BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780836|ref|YP_003065249.1| putative type I
restriction-modification system DNA methylase [Candidatus Liberibacter
asiaticus str. psy62]
         (674 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040513|gb|ACT57309.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score = 1395 bits (3610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/674 (100%), Positives = 674/674 (100%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL
Sbjct: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF
Sbjct: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP
Sbjct: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL
Sbjct: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP
Sbjct: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL
Sbjct: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG
Sbjct: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV
Sbjct: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI
Sbjct: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ
Sbjct: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV
Sbjct: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660

Query: 661 EAQIATLLEEMATE 674
           EAQIATLLEEMATE
Sbjct: 661 EAQIATLLEEMATE 674


>gi|152969515|ref|YP_001334624.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|294496730|ref|YP_003560423.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae]
 gi|150954364|gb|ABR76394.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339439|gb|ADE43993.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae]
          Length = 675

 Score = 1117 bits (2888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + 
Sbjct: 1   MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           AF  ++++L++ ++  A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+
Sbjct: 61  AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+  KIPP+
Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G  SRMLDYRTFGYRRI+
Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LDK G+ RLEA+  W KLS  HQ+FW + LKP++ Q  PY WAE+FV  S
Sbjct: 481 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I
Sbjct: 541 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 601 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A+E
Sbjct: 661 VEAEIAALLAEVASE 675


>gi|152973655|ref|YP_001338695.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150958437|gb|ABR80465.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 684

 Score = 1116 bits (2886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + 
Sbjct: 10  MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 69

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           AF  ++++L++ ++  A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+
Sbjct: 70  AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 129

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 130 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 189

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+  KIPP+
Sbjct: 190 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 249

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 250 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 309

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 310 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 369

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 370 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 429

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G  SRMLDYRTFGYRRI+
Sbjct: 430 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 489

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LDK G+ RLEA+  W KLS  HQ+FW + LKP++ Q  PY WAE+FV  S
Sbjct: 490 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 549

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I
Sbjct: 550 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 609

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 610 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 669

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A+E
Sbjct: 670 VEAEIAALLAEVASE 684


>gi|78357909|ref|YP_389358.1| type I restriction-modification system DNA methylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220314|gb|ABB39663.1| type I restriction-modification system DNA methylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 675

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/675 (78%), Positives = 589/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE Y 
Sbjct: 1   MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYA 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F  ++++L++ ++  A Y F+NTSEYSL TLGST TR NLE YIA FSDNA+AIFE+FD
Sbjct: 61  TFKDADVELDTILRSTAEYPFFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHP+ VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G   K+PP+
Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK+AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKNAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++DDQRRQILDIY + E    SRMLDYRTFGYRRIK
Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM   LDK G+ RLEAD  W KL   HQ+FW + LKP++ Q   YGWAE+F K++
Sbjct: 481 VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDT 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVKA+K+FI A INAFG KDP A+PVTD NG  +PDT+LT+YENVPY+E I
Sbjct: 541 IKSDEAKQLKVKANKTFIAALINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDAY+D+ F D KD ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 601 DDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A++
Sbjct: 661 VEAEIAALLAEVASK 675


>gi|152998551|ref|YP_001355472.1| N-6 DNA methylase [Shewanella baltica OS185]
 gi|151367565|gb|ABS10564.1| N-6 DNA methylase [Shewanella baltica OS185]
          Length = 675

 Score = 1100 bits (2845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/675 (77%), Positives = 589/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEF+GSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALE TR  VRE Y 
Sbjct: 1   MTEFSGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALESTREVVREAYD 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F  + ++L+  ++  AGY FYNTSEYSLSTLGST TR NLE YI+ FSDNA+AIFE+F+
Sbjct: 61  NFKDAEVELDPILRQTAGYPFYNTSEYSLSTLGSTKTRRNLEDYISLFSDNARAIFEEFE 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +TI RLEKAGLL+ ICKNF+GI+LHPDTVPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTIIRLEKAGLLFTICKNFAGIDLHPDTVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHVAD G+H+KIPP+
Sbjct: 181 PRDVVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVADYGNHYKIPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI QGSTLS D F G RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNILQGSTLSNDQFAGDRFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE+EHK GELGRFGPGLP+I+DGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKTAVEREHKQGELGRFGPGLPRINDGSMLFLMHLASKLELPKNGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG AGSGESEIRRWLLENDL+EAIVALPTD+FFRTNIATYLWILSN+KT+ R+
Sbjct: 361 LSGSPLFNGGAGSGESEIRRWLLENDLVEAIVALPTDIFFRTNIATYLWILSNKKTDNRK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWT I+NEG KRRI+ DDQRRQILDIY + EN   S+M+DY+ FGYRRIK
Sbjct: 421 GKVQLINATDLWTPIKNEGNKRRIVGDDQRRQILDIYAAAENDALSKMVDYQVFGYRRIK 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LD+ GL+ LEA  TW+KL   H++FW + +KP + +   Y WAE+F KE+
Sbjct: 481 VLRPLRMTLKLDEQGLSTLEATDTWQKLPVEHKAFWREAIKPQLGETKEYIWAETFTKET 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            K+ +AK LKVK +K+FI A I AFG+ DP A+PV D  G  +PDT+LT+YENVPYL+SI
Sbjct: 541 AKTPDAKLLKVKGNKTFITALIAAFGKNDPDAEPVIDAQGNIVPDTDLTDYENVPYLDSI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           QDYF REV PH PDAYID+ FID++DK++GRVGYEINFNRFFYQYQP RKL DIDAELK 
Sbjct: 601 QDYFAREVLPHAPDAYIDESFIDDRDKQLGRVGYEINFNRFFYQYQPPRKLHDIDAELKE 660

Query: 660 VEAQIATLLEEMATE 674
           VE++IA LL E+ATE
Sbjct: 661 VESEIAALLAEVATE 675


>gi|310830281|ref|YP_003965381.1| type I restriction-modification system DNA methylase, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308753187|gb|ADO44330.1| type I restriction-modification system DNA methylase, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 673

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/676 (60%), Positives = 501/676 (74%), Gaps = 6/676 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E      SLA+FIWKNA+DLWG+FKH +FGK+ILPFTLLRRLEC LEPTR  VRE   
Sbjct: 1   MSETQVKNTSLADFIWKNADDLWGNFKHVEFGKIILPFTLLRRLECVLEPTREQVRETVK 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           +   S IDL+  ++   G+ FYNTS YSL++LG+T TR NLE YIA FS+NA+ IFE FD
Sbjct: 61  SLKDSGIDLDVILRQQTGFPFYNTSNYSLASLGATRTRQNLEDYIAQFSENARVIFEQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++TIAR+++AG+LYKIC NFS I+LHPD VP+RVMSN+YEHLIRRFG+EV+E AEDFMT
Sbjct: 121 FANTIARMDRAGVLYKICLNFSAIDLHPDAVPERVMSNVYEHLIRRFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV      + I P+
Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRSLQDRYSIAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +VP+GQELEPETHAVC+AGML++ LESDP RDLSKNI+ GSTLS D   G++FHYC+SNP
Sbjct: 241 IVPYGQELEPETHAVCLAGMLLKTLESDPGRDLSKNIKLGSTLSADKHRGEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWE D DAV +EH + G  GRFGP LP++SDGSMLFL+HL +KLE P  GGGRAAI
Sbjct: 301 PFGKKWEMDADAVTREHLEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLEDPIKGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AG GESEIRR+LLE D++EAI+ALPT++FFRT I TY+WILSN+K + R
Sbjct: 361 VLSGSPLFNGNAGQGESEIRRYLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNKKPKHR 420

Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +G VQLINAT L+  +R +EG KRR + +DQ  +I+ +Y      K S +L    FGYRR
Sbjct: 421 KGMVQLINATGLYEPMRKSEGNKRRRVGEDQTAEIVRMYSEFVQTKESLILQATDFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I+VLRPLR   I+ + G+A L  +  W K S   Q+ WL + +  + +   + W ESF K
Sbjct: 481 IRVLRPLRKKMIISEEGIAALADEKAWEKRSAGQQAGWLGLFRENLGRTESWHWIESFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
            + K ++      K     I AF  AF   DP  DPVTD  G  IPD +LT+YENVP   
Sbjct: 541 NAAKCDDDLG---KVDVGLIKAFQKAFAVHDPDMDPVTDKKGNVIPDDDLTDYENVPLTT 597

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I DY   EV PH  DAYID+ + DE D +IG VGYEINFNR FY+YQP RKL+DIDAEL
Sbjct: 598 DIHDYLASEVLPHAEDAYIDETYRDETDGDIGIVGYEINFNRHFYEYQPPRKLEDIDAEL 657

Query: 658 KGVEAQIATLLEEMAT 673
           K VEA+IA +L E+  
Sbjct: 658 KAVEAEIAGMLAEVTA 673


>gi|260427933|ref|ZP_05781912.1| N-6 DNA methylase [Citreicella sp. SE45]
 gi|260422425|gb|EEX15676.1| N-6 DNA methylase [Citreicella sp. SE45]
          Length = 673

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/674 (59%), Positives = 505/674 (74%), Gaps = 6/674 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +  +LA+FIWKNA+DLWG+FKHTDFGK+ILPFTLLRRLEC LEPTR A  +   
Sbjct: 1   MSQETKNNTTLADFIWKNADDLWGNFKHTDFGKIILPFTLLRRLECVLEPTREATLQAVE 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F GS ID+   ++   GY FYNTS Y+L++LG+T TR NLE YI  FSDNA+ IF+ FD
Sbjct: 61  NFKGSGIDMGVLLRQQTGYPFYNTSSYTLASLGATRTRQNLEDYIGQFSDNARVIFDQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+AR+++AG+LYKIC NF+ ++LHP+ VP+R MSN+YEHLIR+FG+EV+E AEDFMT
Sbjct: 121 FINTVARMDRAGVLYKICLNFAAMDLHPEAVPERTMSNVYEHLIRKFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLL+PDD LF++  G+IRTLYDPTCGTGGFL+D M HVA+     K+ P+
Sbjct: 181 PRDVVHLAIELLLEPDDELFRQDEGLIRTLYDPTCGTGGFLSDGMEHVANLRDRFKVAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++P+GQELEPETHAVC+A ML++ +ESDP RDLSKNI+ GSTLS D    ++FHYC+SNP
Sbjct: 241 IIPYGQELEPETHAVCLASMLLKTVESDPGRDLSKNIKLGSTLSDDKHRSEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWE D+ AV +EHK  +  GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI
Sbjct: 301 PFGKKWEMDQAAVTREHKEQQFEGRFGPKLPRVSDGSMLFLLHLLSKLETPENGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AG GESEIRR LLE D++E+I+ALP ++FFRT I+TY+WILSN+K   R
Sbjct: 361 VLSGSPLFNGNAGQGESEIRRHLLEQDVVESIIALPQEIFFRTGISTYIWILSNKKPAHR 420

Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINAT L+  +R +EG KRR + ++Q R+I+ +Y   E  K S +LD   FGYRR
Sbjct: 421 KGKVQLINATGLYEPLRKSEGNKRRKVGEEQTREIVRMYSDFEASKESLILDSTEFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           IKVLRPLR   ++ + G+A +  +  W K S   Q+ WLD+ +  M +   + W ESF K
Sbjct: 481 IKVLRPLRKKMVISEDGIAAVADEKAWEKRSAEQQAAWLDLFRENMDREEGWHWMESFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
            S K  +A     K   + I AF  AFG +DP  D V D  G  IPD +LT++ENVP   
Sbjct: 541 NSAKRTDALG---KVDAALIKAFQKAFGVRDPELDEVVDKKGNVIPDDDLTDFENVPLGT 597

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I+DY   EV PH  DAYID+ F DE D  IG VGYEINFNR+FY+YQP R+L+DIDAEL
Sbjct: 598 DIRDYLAAEVLPHAEDAYIDETFRDETDGGIGIVGYEINFNRYFYEYQPPRELEDIDAEL 657

Query: 658 KGVEAQIATLLEEM 671
           K VEA+IA +L E+
Sbjct: 658 KAVEAEIAGMLAEV 671


>gi|21243627|ref|NP_643209.1| type I restriction-modification system DNA methylase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21109202|gb|AAM37745.1| type I restriction-modification system DNA methylase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 685

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/674 (58%), Positives = 495/674 (73%), Gaps = 12/674 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            S   LA+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLEC LEPTR  VRE +  F   
Sbjct: 16  ASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDK 75

Query: 66  NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            +D +  ++  AG  FYNTS+YSL+TLG+T T++NLE+Y+A+FSDNA+ IF+ F+F+ TI
Sbjct: 76  GLDTDLILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTI 135

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ARL +A +L+KIC+NF+  +LHPD VPDRVMSNIYEHLIRRFGSEV+E AEDFMTPRDVV
Sbjct: 136 ARLARADILFKICQNFANTDLHPDVVPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVV 195

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HLAT LLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMN+V    +  K PP+L+P G
Sbjct: 196 HLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDGFAAQGKAPPVLIPFG 255

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGK 303
           QELEPETHAV +A ML+RRLE++P RDLS N+    STLS+D + G+RFHYCLSNPPFGK
Sbjct: 256 QELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGK 315

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           KWEKD+  VE+E K  G  GRFG G P++SDGSMLF+ HL +KLE P  GGGRAAI+LS 
Sbjct: 316 KWEKDQAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSG 375

Query: 363 SPLFNGRAGS---GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           SPLF G AG     ES+IRRWLLE D +E IVALP D+FFRT I TY+W+L+N K E+RR
Sbjct: 376 SPLFTGTAGGHGHSESQIRRWLLEKDYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRR 435

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+AT++ + +R  EG KRR ++D Q + I  +Y     G+  R++DYR FGYRRI
Sbjct: 436 GKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGENVRIVDYRDFGYRRI 495

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           KV RPLR+   + + GLA L     + KL    QS WL +L+  + Q YPY W  +    
Sbjct: 496 KVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTWFATLPAL 555

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
           + K+   K      +K+   A  +A G +D +A  V D +G  + D +L ++E VP  + 
Sbjct: 556 AKKAGLPKI-----AKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQP 610

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  Y   EV PHV DA++D  F D++D + G+VGYEINFNR+FY+Y P R L +ID+ELK
Sbjct: 611 IDTYMAAEVLPHVSDAWVDASFTDDEDGQRGKVGYEINFNRYFYKYVPPRDLHEIDSELK 670

Query: 659 GVEAQIATLLEEMA 672
            VEA+IA LL+E+A
Sbjct: 671 AVEAEIAALLDEVA 684


>gi|110681176|ref|YP_684183.1| type I restriction-modification system DNA methylase, putative
           [Roseobacter denitrificans OCh 114]
 gi|109457292|gb|ABG33497.1| type I restriction-modification system DNA methylase, putative
           [Roseobacter denitrificans OCh 114]
          Length = 677

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/679 (58%), Positives = 496/679 (73%), Gaps = 10/679 (1%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++      SLA+FIWKNA+DLWGDF+HT+FGK+ILPFTLLRRLEC L PTR  VRE   
Sbjct: 1   MSDAQTKNTSLADFIWKNADDLWGDFRHTEFGKIILPFTLLRRLECVLAPTREEVRETVK 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             G S ID++  ++   G+ FYNTS Y L +LG+T TR NLE YI+ FSDNA+ IFE FD
Sbjct: 61  NLGDSGIDMDVILRQQTGFPFYNTSNYDLRSLGATRTRANLEDYISQFSDNARVIFEQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++TIAR+++AG+LYKIC+NF+ I+LHPDTVP+R MSN+YEHLIRRFG+EV+E AEDFMT
Sbjct: 121 FANTIARMDRAGVLYKICQNFAAIDLHPDTVPERTMSNVYEHLIRRFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV +    + I P+
Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRNLQDRYSIAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++P+GQELEPETHAVC+AGML++ LE+DP RDLSKNI  GSTLS D    ++FHYC+SNP
Sbjct: 241 IIPYGQELEPETHAVCLAGMLLKTLETDPGRDLSKNIALGSTLSADKHRPEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWEKD+  V +EHK  G  GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI
Sbjct: 301 PFGKKWEKDQADVTREHKEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLESPENGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +LS SPLFNG AG GESEIRR LLE D++EAI+ALPT++FFRT I TY+WILSN K   R
Sbjct: 361 ILSGSPLFNGNAGQGESEIRRHLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNDKPAHR 420

Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINAT+++  +R +EG KRR + + Q R I+ +Y   E  K S +L    FGYRR
Sbjct: 421 KGKVQLINATEMYEPMRKSEGNKRRRVGEQQTRDIVQMYADFEATKQSLILSAPDFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           IKVLRPLR   ++   GLA L  +  W K +   ++ W  +    M     + W E+F K
Sbjct: 481 IKVLRPLRKKIVISAEGLATLADEKAWEKRTEAQRAGWTALFNDHMGAEEGWHWIEAFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY-- 595
            ++K +       KA  + I AF  A G  DP  DPVTD  G+ IPD +LT++ENVP   
Sbjct: 541 NAVKRDADLG---KADVALIKAFRKALGVHDPELDPVTDKKGQIIPDDDLTDFENVPLAA 597

Query: 596 --LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
                I  Y   EV+PH  DAYID+ + DE D +IG  GYEINFNR+FY+Y P R L +I
Sbjct: 598 DGTADIHGYLAAEVTPHAHDAYIDETYRDESDGQIGIKGYEINFNRYFYEYLPPRDLDEI 657

Query: 654 DAELKGVEAQIATLLEEMA 672
           DAELK VEA+IA +L E+A
Sbjct: 658 DAELKAVEAEIAAVLAEVA 676


>gi|169634729|ref|YP_001708465.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter baumannii SDF]
 gi|169153521|emb|CAP02683.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter baumannii]
          Length = 671

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/669 (55%), Positives = 471/669 (70%), Gaps = 13/669 (1%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + ++LA+FIW NA DLWGDF HT+FGK+ILPFT+LRRLEC LEPT+ AV   Y  F    
Sbjct: 12  TESTLASFIWNNANDLWGDFPHTEFGKIILPFTVLRRLECVLEPTKDAVLNTYEQFKDQG 71

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + L+  +  V+G  FYN S Y+LS LG T T+ N E YIA+ S+N + IFE FDF++TI 
Sbjct: 72  MALDDILTNVSGNPFYNKSTYNLSNLGGTKTKANFEDYIANSSENVRVIFEQFDFNTTIN 131

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L KA LL +IC NF+ I+LHP+ VPDR MSN+YEHLI +FG+EV  G+EDFMTPRD+VH
Sbjct: 132 KLAKANLLLRICNNFAAIDLHPNVVPDRTMSNVYEHLIAKFGAEVGTGSEDFMTPRDIVH 191

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LA  LLL+PD+ LF++  G+IRT+YD TCGT GFLTD MN+V      +K+ P+LVPHGQ
Sbjct: 192 LAATLLLEPDNELFEQKNGLIRTIYDQTCGTSGFLTDMMNYVDGFKDRYKVAPVLVPHGQ 251

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+PETHAV +  ML+++LESDP RDLS+NI+ GSTLS DLF G+RFHY  SNPPFG  W
Sbjct: 252 ELQPETHAVALGSMLLKKLESDPSRDLSQNIKLGSTLSNDLFAGQRFHYQCSNPPFGMSW 311

Query: 306 EKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            KD +AV+ EHK   L GRFG GLPK SDGSMLFL +L +KLELP NGGGR AIVLS SP
Sbjct: 312 AKDANAVQLEHKEKGLNGRFGAGLPKASDGSMLFLQNLISKLELPENGGGRGAIVLSGSP 371

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSGESEIRR++LEND +EAIVALPTD+FFRT I TY+W++SNRK E+R+GKVQL
Sbjct: 372 LFNGGAGSGESEIRRFILENDYLEAIVALPTDIFFRTGIGTYIWLISNRKPEQRKGKVQL 431

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+AT + +S+R NEG KR+ I+ +   +I  IY   E    S++ DY  FGYRR+KVLRP
Sbjct: 432 IDATGMGSSMRKNEGNKRKFIDQNSIDEISRIYADFEESSVSKIFDYTDFGYRRVKVLRP 491

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE-SFVKESIKS 542
           LR+    D   L   +A   + KLS   Q+     ++        Y W E +F+K    S
Sbjct: 492 LRIDLQFDAEKLESFKASKEFGKLSDSDQNTVSAYIEQQFGDSKDYAWFENTFLKNLPLS 551

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
                   K SK    A I AFG ++P A+ V ++NGE   D+ LT+YEN+P  + I  Y
Sbjct: 552 --------KVSKGLKNALIAAFGVQNPDAEAV-EINGEVQMDSELTDYENIPLNQDIAAY 602

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             +EV PH PDA ID  + D KD ++G VGYEINFNR+FY ++  R   +I AE+K + A
Sbjct: 603 MAKEVLPHAPDAVIDTSYTDSKDGQVGVVGYEINFNRYFYVFEQPRHPNEIMAEIKALSA 662

Query: 663 QIATLLEEM 671
           ++A LL E+
Sbjct: 663 EVAQLLGEI 671


>gi|229520169|ref|ZP_04409596.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
 gi|229342763|gb|EEO07754.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
          Length = 660

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/669 (51%), Positives = 453/669 (67%), Gaps = 20/669 (2%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA   S 
Sbjct: 8   QSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAEKQSG 67

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL   + +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F F  TI 
Sbjct: 68  IDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEFKFGQTIE 127

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKA LLY++   F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPRD V 
Sbjct: 128 DLEKAKLLYRMVSYFANLDLHPDVVSDRVLSDAYEELIFKFASSVNEKAGEFMTPRDAVR 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    VP GQ
Sbjct: 188 LATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----VPFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPFG KW
Sbjct: 243 ELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPFGIKW 295

Query: 306 EKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           EK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVLS SP
Sbjct: 296 EKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVLSGSP 355

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L NG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K   R+ +VQL
Sbjct: 356 LLNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEPRRKNQVQL 415

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           IN  D+WT +R ++G KR+ ++D+Q   I+  Y   E     ++     F YR++ + RP
Sbjct: 416 INLADIWTPMRKSQGSKRKYLSDEQIDDIVRAYDGFETSDNCKLFSTTDFAYRKVTIQRP 475

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + ++K N
Sbjct: 476 LRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVQYLTDNL-GLQPYEWA----RLAVKKN 530

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
             K    K SK+   A    F   DP+ +P  D  G+ I D  L + E++P+   ++DYF
Sbjct: 531 NNKGDFGKCSKALATALTAHFLIVDPQFEPALDEKGQVIADPKLKDTESIPFDRDVEDYF 590

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
           V+EV PHVPDA+ID    DEKD E+G +GYEINFNR+FYQY P R+L  IDAELK  EA+
Sbjct: 591 VQEVLPHVPDAFIDHSVRDEKDGEVGIIGYEINFNRYFYQYVPPRELTVIDAELKACEAR 650

Query: 664 IATLLEEMA 672
           I  LL E+A
Sbjct: 651 IQALLNEVA 659


>gi|170683208|ref|YP_001746680.1| type I restriction-modification system DNA methylase [Escherichia
           coli SMS-3-5]
 gi|170520926|gb|ACB19104.1| type I restriction-modification system DNA methylase [Escherichia
           coli SMS-3-5]
 gi|330908617|gb|EGH37136.1| type 1 restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli AA86]
          Length = 659

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/669 (51%), Positives = 454/669 (67%), Gaps = 20/669 (2%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA   S 
Sbjct: 8   QSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAEKQSG 67

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL   + ++AG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F F  TI 
Sbjct: 68  IDLGLVLPEIAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEFKFGQTIE 127

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPRD V 
Sbjct: 128 DLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPRDAVR 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    VP GQ
Sbjct: 188 LATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----VPFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPFG KW
Sbjct: 243 ELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPFGIKW 295

Query: 306 EKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           EK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVLS SP
Sbjct: 296 EKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVLSGSP 355

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   R+ +VQL
Sbjct: 356 LFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPRRKNQVQL 415

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           IN  D+WT +R ++G KR+ ++D+Q   I+  Y   E     ++     F YR++ + RP
Sbjct: 416 INLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYRKVTIQRP 475

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + ++K N
Sbjct: 476 LRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNL-GLQPYEWA----RLAVKKN 530

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
             K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   ++DYF
Sbjct: 531 NNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFDRDVEDYF 590

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID ELK  EA+
Sbjct: 591 AQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRELKACEAR 650

Query: 664 IATLLEEMA 672
           I  LL E+A
Sbjct: 651 IQALLNEVA 659


>gi|297581972|ref|ZP_06943892.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
 gi|297533839|gb|EFH72680.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
          Length = 660

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/669 (51%), Positives = 453/669 (67%), Gaps = 20/669 (2%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA   S 
Sbjct: 8   QSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAEKQSG 67

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL   + +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F F  TI 
Sbjct: 68  IDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEFKFGQTIE 127

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPRD V 
Sbjct: 128 DLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPRDAVR 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    VP GQ
Sbjct: 188 LATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----VPFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPFG KW
Sbjct: 243 ELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPFGIKW 295

Query: 306 EKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           EK K  VE+EH+  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVLS SP
Sbjct: 296 EKAKKEVEREHQQLKYAGRFGPGLPSISDGSMLFLLHLVSKMEKPENGGGRVGIVLSGSP 355

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K   R+  VQL
Sbjct: 356 LFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEVRRKNLVQL 415

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           IN  D+WT +R ++G KR+ ++D+Q   I+  Y   E     ++     F +R++ + RP
Sbjct: 416 INLVDIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFETSDNCKIFLTTDFAFRKVTIQRP 475

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + ++K N
Sbjct: 476 LRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVHHLTDNL-GLQPYEWA----RLAVKKN 530

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
             K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   ++DYF
Sbjct: 531 NNKGNFGKCSKALATALTAHFLKVDPQFEPALDEKGQVIADPKLKDTESIPFDRDVEDYF 590

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID ELK  EA+
Sbjct: 591 AQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYAPPRELSVIDGELKACEAR 650

Query: 664 IATLLEEMA 672
           I  LL E+A
Sbjct: 651 IQALLNEVA 659


>gi|323160945|gb|EFZ46869.1| N-6 DNA Methylase family protein [Escherichia coli E128010]
          Length = 659

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/669 (51%), Positives = 452/669 (67%), Gaps = 20/669 (2%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA   S 
Sbjct: 8   QSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAEKQSG 67

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL   + ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F F  TI 
Sbjct: 68  IDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEFKFGQTIE 127

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPRD V 
Sbjct: 128 DLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPRDAVR 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    VP GQ
Sbjct: 188 LATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----VPFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPFG KW
Sbjct: 243 ELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPFGIKW 295

Query: 306 EKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           EK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVLS SP
Sbjct: 296 EKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVLSGSP 355

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   R+ +VQL
Sbjct: 356 LFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPRRKNQVQL 415

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           IN  D+WT +R ++G KR+ ++D+Q   I+  Y   E     ++     F YR++ + RP
Sbjct: 416 INLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYRKVTIQRP 475

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + ++K N
Sbjct: 476 LRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNL-GLQPYEWA----RLAVKKN 530

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
             K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   ++DYF
Sbjct: 531 NNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFDRDVEDYF 590

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID ELK  EA+
Sbjct: 591 AQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRELKACEAR 650

Query: 664 IATLLEEMA 672
           I  L  E+A
Sbjct: 651 IQALPNEVA 659


>gi|323160770|gb|EFZ46705.1| N-6 DNA Methylase family protein [Escherichia coli E128010]
          Length = 603

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 308/612 (50%), Positives = 412/612 (67%), Gaps = 20/612 (3%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA   S 
Sbjct: 8   QSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAEKQSG 67

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL   + ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F F  TI 
Sbjct: 68  IDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEFKFGQTIE 127

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPRD V 
Sbjct: 128 DLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPRDAVR 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    VP GQ
Sbjct: 188 LATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----VPFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPFG KW
Sbjct: 243 ELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPFGIKW 295

Query: 306 EKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           EK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVLS SP
Sbjct: 296 EKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVLSGSP 355

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   R+ +VQL
Sbjct: 356 LFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPRRKNQVQL 415

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           IN  D+WT +R ++G KR+ ++D+Q   I+  Y   E     ++     F YR++ + RP
Sbjct: 416 INLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYRKVTIQRP 475

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + ++K N
Sbjct: 476 LRAKLDITAAGIAAFVQQDTFKKLRPEQQAAWVQYLTDNL-GLQPYEWA----RLAVKKN 530

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
             K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   ++DYF
Sbjct: 531 NNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFDRDVEDYF 590

Query: 604 VREVSPHVPDAY 615
            +EV PHVPDA+
Sbjct: 591 AQEVLPHVPDAF 602


>gi|291287372|ref|YP_003504188.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|291287881|ref|YP_003504697.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884532|gb|ADD68232.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885041|gb|ADD68741.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 639

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 313/667 (46%), Positives = 427/667 (64%), Gaps = 37/667 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + AN IW  A+ L GDFK  ++G++ILPF +LRRLEC LEPTR +V E+Y A     +DL
Sbjct: 5   TFANKIWSVADLLLGDFKQAEYGRIILPFMVLRRLECVLEPTRESVLEQYEAVKDQGLDL 64

Query: 70  ESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +  +  +AG +FY TS+++LSTLG+TNT+ NLE YI+ FS N + +FE F FSS I +LE
Sbjct: 65  DLILPGIAGCTFYTTSKFTLSTLGATNTKQNLEDYISKFSSNVRQVFEQFSFSSWIGKLE 124

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +A LLY +   F  +ELHP  V +  M  ++EHLIR+F    ++ A +F TPRDVV LAT
Sbjct: 125 EANLLYLVSNEFKDLELHPSVVSNYEMGLVFEHLIRKFAEASNDTAGEFYTPRDVVRLAT 184

Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            L+   D +AL  E  G++RT+YD   GTGGFL+  +  V +  ++  I    +P+ QEL
Sbjct: 185 TLVFSTDQEALSGE--GIVRTIYDCAAGTGGFLSSGIELVGEWNTNATI----IPYAQEL 238

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PETHA+CVA  LI+  ++       +NI+ G+TLS DL +G+ F+YCL+NPPFG  W+K
Sbjct: 239 NPETHAICVADKLIQGYDT-------RNIKFGNTLSNDLLSGETFNYCLANPPFGVDWKK 291

Query: 308 DKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            +  V  EH+  G  GRFGPGLP++SDGSMLFL+HL +K + P  GG R  IVLS SPLF
Sbjct: 292 VQKPVNDEHRVKGYAGRFGPGLPRVSDGSMLFLLHLLSKRKPPEEGGTRIGIVLSGSPLF 351

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           NG AGSGESEIRRW+LEND +EA+VALPTD+F+ T I+TY+W+LS  K E R+G VQLI+
Sbjct: 352 NGGAGSGESEIRRWILENDWLEALVALPTDMFYNTGISTYIWVLSTNKEEHRKGLVQLID 411

Query: 427 ATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           A+ + T +R N G KR+ +ND+Q  +   I+ + E    S++ +   FGYRRI V RPL+
Sbjct: 412 ASKISTPMRKNLGSKRKWLNDEQITETARIHDAFEESDVSKIFETEQFGYRRITVERPLQ 471

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
           + F             +T   +     S   + +  + +    Y   +SF+K       A
Sbjct: 472 LKF------------SVTPENIESWANSKNAEYVDELSKVSGEYLDIDSFLK-------A 512

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605
             +K K S + I      FG+  P A  + D  G  +PD +L +YENVP  E I +YF R
Sbjct: 513 AGIK-KPSAALIKNICKFFGKHYPDAKVICDAKGNPLPDPDLRDYENVPLGEDIDEYFER 571

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV PHVPDA+ID    D KD  +G VGYEINFNR+FY+Y P R L+DIDA+L+ VE  IA
Sbjct: 572 EVIPHVPDAWIDTAKKDHKDGLVGIVGYEINFNRYFYEYVPPRSLEDIDADLEAVENAIA 631

Query: 666 TLLEEMA 672
            LL+++ 
Sbjct: 632 ELLKKVT 638


>gi|299068120|emb|CBJ39335.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Ralstonia solanacearum CMR15]
          Length = 641

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 317/672 (47%), Positives = 421/672 (62%), Gaps = 47/672 (6%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +LA  IW  A+ L GDF+ ++FG+VILPF +LRRLEC LEPT+  V  +Y    GS+IDL
Sbjct: 5   NLAADIWNIADTLRGDFRQSEFGRVILPFAVLRRLECVLEPTKREVLAQYETVKGSSIDL 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +  +   A  +FYNTS++SL+TLGST+TR NLE Y++ FS NA+ +FE F+F   + +LE
Sbjct: 65  DLLLPATAKATFYNTSQFSLATLGSTSTRANLEDYVSKFSSNARQVFEHFEFGKWLEKLE 124

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           KA LL+ + + FS  +LHP+T+ +  M   +EHLIR+F    ++ A +F TPRDVV L T
Sbjct: 125 KANLLFLVAQKFSVFDLHPETISNHEMGLAFEHLIRKFAESANDTAGEFFTPRDVVRLVT 184

Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            L+   D DAL  +  G+IRT+YD   GTGGFL+  +  V +     +    L+P+ QEL
Sbjct: 185 TLVFATDHDALTGD--GVIRTVYDCAAGTGGFLSTGIEQVNEWNPSAR----LIPYAQEL 238

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PET+A+CVA  LI+  +       +KNI+ G+TLS D    +RF YCL+NPPFG KWEK
Sbjct: 239 NPETYAICVADKLIQGYD-------TKNIKLGNTLSTDQLRNERFDYCLANPPFGVKWEK 291

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSS 363
            +  V+ EH N G  GRFGPGLP++ DGS+LFLMHL +K + P N    G R  IVLS S
Sbjct: 292 VQKEVQAEHVNEGYGGRFGPGLPRVGDGSLLFLMHLLSKRK-PVNANSKGTRIGIVLSGS 350

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLFNG A SGESEIRRW+LEND +EAIV LPTDLF+ T I TY+W+LSN KT ER+  VQ
Sbjct: 351 PLFNGGAASGESEIRRWILENDWLEAIVGLPTDLFYNTGIGTYIWVLSNNKTPERKNLVQ 410

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+AT + + ++   G KR+ ++++Q   I  I  +  +   S++     FGYRRI V R
Sbjct: 411 LIDATGMHSPMQKSLGSKRKRLSEEQIADIARIQAAMSDNGVSKLFKTTDFGYRRITVER 470

Query: 483 PLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           PLRM F      +A   A   D     L  +  +F                       +S
Sbjct: 471 PLRMRFEATDARVANFNAVTGDAYAAALENIRGTF-----------------------KS 507

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           I +    T   K +K+ +     A G KDP A P+ D  G  + D +L E+ENVP  E I
Sbjct: 508 IAALLKSTGIKKLTKAHLKELTTAMGIKDPDAQPMKDEKGNVMADPDLREFENVPLGEDI 567

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            +Y  +EV PHVPDA+ID+   DEKD E+G VGYEINFNR+FYQYQP R L DIDA+LK 
Sbjct: 568 YEYLDKEVLPHVPDAWIDESKKDEKDGEVGIVGYEINFNRYFYQYQPPRALADIDADLKA 627

Query: 660 VEAQIATLLEEM 671
           +EA+IA LL E+
Sbjct: 628 IEAEIAGLLGEV 639


>gi|146280648|ref|YP_001170801.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145568853|gb|ABP77959.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 639

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 310/670 (46%), Positives = 421/670 (62%), Gaps = 45/670 (6%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +LA FIW  A+ L G FK +++G++ILPFT+LRRLEC LEPTR  VR ++ +   S +D+
Sbjct: 5   TLAPFIWNIADLLLGAFKPSEYGRIILPFTVLRRLECVLEPTRDKVRSQFESMKASGVDM 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +  +   AG +FYN S++SL ++GST+TR NLE YIA FS NA+ +FE F F + +A+LE
Sbjct: 65  DLILPTTAGATFYNVSQFSLGSVGSTSTRANLEDYIAKFSANARQVFEHFAFDTWLAKLE 124

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              LLY + + F+ ++LHPD + +  M  ++EHLIR+F    ++ A  + TPRDVV LAT
Sbjct: 125 NRNLLYLVTQKFAAVDLHPDKISNHEMGLVFEHLIRKFAESSNDDAGQYFTPRDVVRLAT 184

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+  PD        G++RT+YD   GTGGFL+ A+  V +   + +    LVP+ QEL 
Sbjct: 185 TLVFAPDHQALN-GEGVVRTVYDCAAGTGGFLSSAIEQVYEWNPNAR----LVPYAQELN 239

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           PET+A+ VA  LI+  ++       +NI+ G+TLS D    ++F YCL+NPPFG KWE  
Sbjct: 240 PETYAISVADKLIQGYDT-------RNIKLGNTLSDDHLPHEQFDYCLANPPFGVKWENV 292

Query: 309 KDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           +  V+ EH + G  GRFG GLP++ DGS+LFLMHL +K +    GG R  IVLS SPLFN
Sbjct: 293 QKQVQAEHSQQGFAGRFGAGLPRVGDGSLLFLMHLLSKRKPVELGGSRIGIVLSGSPLFN 352

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+LSN K   R+GKVQLI+A
Sbjct: 353 GGAGSGESEIRRWILENDWLEAIIALPTDLFYNTGIGTYIWVLSNHKDALRKGKVQLIDA 412

Query: 428 TDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           + +   +R   G KR+ ++D+Q  +I  ++ + E G  S++     FGYRRI V RPLR+
Sbjct: 413 SAMHAPMRKSLGSKRKYLSDEQIAEIAKLHEAFEEGPNSKIFATTDFGYRRITVERPLRL 472

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK-ESIKSNEA 545
            F             IT  +L              + Q I     AE+F        N +
Sbjct: 473 RF------------SITPERLK-------------IYQDIKGADQAEAFATVRGEYDNLS 507

Query: 546 KTLKV----KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
             LK     K  K  + A ++ FG +D  A PV D  G    D++L E+ENVP  ++I D
Sbjct: 508 AFLKAAGIKKLGKGALKAALSCFGERDANAQPVLDDKGNQQADSDLREFENVPLNQNIDD 567

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PHVPDA+ID    D KD ++G VGYEINFNR+FY YQP R L +IDA+LK VE
Sbjct: 568 YFAREVLPHVPDAWIDTGKTDAKDGQVGIVGYEINFNRYFYVYQPPRPLAEIDADLKAVE 627

Query: 662 AQIATLLEEM 671
           A+IA LL E+
Sbjct: 628 AEIAALLGEV 637


>gi|261212600|ref|ZP_05926884.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|260837665|gb|EEX64342.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
          Length = 679

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 309/693 (44%), Positives = 419/693 (60%), Gaps = 52/693 (7%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +S+A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+  V  KY       I+
Sbjct: 7   SSVAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPEVLAKYETVKAMPIE 66

Query: 69  LES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +       A  SFYNTS+  L+ LG T   +NLESYI SFS NA+ IFE FDF +TI +
Sbjct: 67  AQDKLLTHAAKLSFYNTSKMDLNRLGETGVASNLESYIQSFSPNAREIFEHFDFFNTIDK 126

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LE+A LLYK+ K F+  +LHPDT+ +  M  ++E LIRRF    +E A +  TPRD+V L
Sbjct: 127 LEEADLLYKVAKRFASTDLHPDTISNYGMGLVFEELIRRFAESSNETAGEHFTPRDIVEL 186

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--PPILVPHG 244
            T+LL   +D L   S G++R++YDPT GTGGFL+  M +V      HK+     L   G
Sbjct: 187 TTSLLFTNEDEL--TSSGLVRSIYDPTAGTGGFLSSGMEYV------HKLNEKASLSAFG 238

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL PE++A+C A MLI+  + D       NI+ G+TLS D     +F Y LSNPPFG  
Sbjct: 239 QELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRNDKFDYMLSNPPFGVD 291

Query: 305 WEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  +  EH + G  GRFG GLP++SDGS+LFL+HL +K+     GG R  I+L+ S
Sbjct: 292 WKKIQKQINDEHTQKGFEGRFGAGLPRVSDGSLLFLLHLISKMRPVSEGGSRIGIILNGS 351

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIRR++LENDL+EAIVALPTD+F+ T IATY+W+LS+ K   R+GKVQ
Sbjct: 352 PLFTGGAGSGESEIRRYILENDLLEAIVALPTDMFYNTGIATYIWVLSSHKPAHRKGKVQ 411

Query: 424 LINATD-----------------------LWTSIRNE-GKKRRIINDDQRRQILDIYVSR 459
           LINA+                         + ++R   G KR+ +  D   +I+  Y   
Sbjct: 412 LINASKERAKTGGRGRSGGSEVEGDDENVFYAAMRKSLGSKRKELTPDAIDKIVQTYGQF 471

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDI 518
               FS++ DY+ FGYRRI V RPL+++ +  D+  L  L+AD  W K+    Q   LD 
Sbjct: 472 AENDFSKIFDYKEFGYRRITVERPLQLAIYPKDELRLEALQADTAWEKMDETTQQAILDA 531

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           L    Q+   Y   + F+K+     + K  +VK S   +   +   G  D  A+ V    
Sbjct: 532 LASFEQE--KYLSRDKFLKQL----KTKLAEVKLSAVQLKLIVKHLGEHDDEAE-VCKAK 584

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+   + +L + ENVP  E++ DYF REV PHVP+A+ID+   D KD E+G VGYEI FN
Sbjct: 585 GQIEANPDLRDNENVPLTETVADYFAREVLPHVPNAWIDESKTDPKDGEVGIVGYEIPFN 644

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           R FY Y+P R L++IDA+L  V A+I  LL+E+
Sbjct: 645 RHFYVYEPPRALEEIDADLDAVSAEIMQLLQEV 677


>gi|121997946|ref|YP_001002733.1| N-6 DNA methylase [Halorhodospira halophila SL1]
 gi|121589351|gb|ABM61931.1| N-6 DNA methylase [Halorhodospira halophila SL1]
          Length = 659

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 301/678 (44%), Positives = 427/678 (62%), Gaps = 30/678 (4%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T + + +A FIW  A+ L GD K + +G+VILPFTLLRRLEC LEPT+    E+ LA   
Sbjct: 3   TENHSQMAGFIWSVADLLRGDLKQSQYGRVILPFTLLRRLECVLEPTK----EQVLAAAK 58

Query: 65  SNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            + D    V+       A   F+NTS  +L TL  T T ++L SY+ SFS +A+ +FE F
Sbjct: 59  EHADKPLGVRERLLRRAADQPFFNTSPLTLGTLSDTQTADDLMSYVQSFSPDAREVFEHF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +F   + +L    LLY++ + F+ ++L P  + +  M +I+E LIR+F    +E A +  
Sbjct: 119 NFEDFVQQLSANNLLYQVVQRFAAMDLSPGRISNFGMGSIFEELIRKFAESSNETAGEHF 178

Query: 179 TPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           TPRDVVHL T+L+L D DD L    P  + T+YDP  GTGGFL+++  ++     +  + 
Sbjct: 179 TPRDVVHLTTSLVLTDQDDKL---QPHSVVTVYDPAAGTGGFLSESDAYIQQVSDNVTVS 235

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HGQEL PE++A+C A MLI+  + +       NI+ G+TLS D   G+RF + L+
Sbjct: 236 L----HGQELNPESYAICKADMLIKGQQVE-------NIKLGNTLSDDELAGERFDFMLA 284

Query: 298 NPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R 
Sbjct: 285 NPPFGVEWKKVQKQVTDEHKRWGYNGRFGPGLPRVSDGSLLFLLHLVSKVRDPREGGSRI 344

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            I+L+ SPLF G AGSGESEIRR+LLE DL+EAIVALPTD+F+ T IATY+WILSN K  
Sbjct: 345 GIILNGSPLFTGGAGSGESEIRRFLLERDLVEAIVALPTDMFYNTGIATYVWILSNDKPP 404

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           ERRG+VQLINAT+ ++ +R   G KR+ I+D     I+ +Y + E  + S++     FGY
Sbjct: 405 ERRGRVQLINATERYSKMRKSLGSKRQYIDDTNIDNIVRLYGAFEESEESKLFPVAEFGY 464

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           RRI V RPLR++F   +  + R+  +   +KL    Q+  L   + M  Q+  Y   ++F
Sbjct: 465 RRITVERPLRLNFQASEERIRRILDEKPIQKLDEDTQARLLAACEAMDGQML-YRDRQAF 523

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
            ++  ++ E + +K+ A    + A +NA   +DP A P TD  G   PDT+L ++ENVP 
Sbjct: 524 TRDLKRALEEREVKLGAPP--MKAVLNALSERDPEAKPCTDAKGNPEPDTSLRDHENVPL 581

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            ES+ DYF REV PHVPDA+ID+   D +D E+G VGYEI FNR FY++ P R L++IDA
Sbjct: 582 TESVYDYFEREVRPHVPDAWIDEAKRDAQDGEVGIVGYEIPFNRHFYKFTPPRPLEEIDA 641

Query: 656 ELKGVEAQIATLLEEMAT 673
           +LK    +I  ++EE++ 
Sbjct: 642 DLKVCTDRIKRMIEELSA 659


>gi|77361018|ref|YP_340593.1| type I restriction-modification system M subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875929|emb|CAI87150.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 684

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 304/691 (43%), Positives = 412/691 (59%), Gaps = 43/691 (6%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +S A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV EKY A     I+
Sbjct: 7   SSTAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPAVLEKYEAVKAMPIE 66

Query: 69  LES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +       A  SFYNTS+  L+ LG T+  +NLESYI SFS NA+ IFE FDF +TI +
Sbjct: 67  AQDKLLTHAAQLSFYNTSKMDLNRLGETDVASNLESYIQSFSPNAREIFEHFDFFNTIDK 126

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L +A LLYK+ K F+  +LHPD + +  M  ++E LIRRF    +E A +  TPRD+V L
Sbjct: 127 LAEADLLYKVAKRFATTDLHPDVINNYGMGLVFEELIRRFAESSNETAGEHFTPRDIVRL 186

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T+L+   DD    +S G++R++YDPT GTGGFL+  M +V +          L   GQE
Sbjct: 187 TTSLVFTNDDDALTQS-GLVRSIYDPTAGTGGFLSSGMEYVLELNDKAS----LSAFGQE 241

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C A MLI+  + D       NI+ G+TLS D    ++F Y LSNPPFG  W+
Sbjct: 242 LNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRTEKFDYMLSNPPFGVDWK 294

Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  +  EH + G  GRFG GLP++SDGS+LFLMHL +K+     GG R  I+L+ SPL
Sbjct: 295 KIQKQINDEHTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPQHEGGSRIGIILNGSPL 354

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+W+LS  K   R+GKVQLI
Sbjct: 355 FTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWVLSTHKPANRKGKVQLI 414

Query: 426 NATD-----------------------LWTSIRNE-GKKRRIINDDQRRQILDIYVSREN 461
           NA                          + ++R   G KR+ + +D    I+  Y     
Sbjct: 415 NAAKERAKTGGRGRSGGGESTEEVENVFYAAMRKSLGSKRKELTEDAIDTIVKTYGQFVE 474

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             FS++ DY+ FGYRRI V RPL+++ +  D+  +  L  D  W KL+   Q   L  L 
Sbjct: 475 NDFSKIFDYQEFGYRRITVERPLQLAVYPKDELRITALTTDKAWDKLNEHAQHSILAALA 534

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
            +      Y   + F+K      E  T  VK S + +   +      D  A+ V    G+
Sbjct: 535 SLNND--KYLSRDVFLKALTTELETATPSVKLSAAQLKLIVKHLSEHDDEAE-VCKTKGK 591

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
              + +L + ENVP  ES+ DYF REV PHVP+A+ID    DE+DKE+G VGYEI FNR 
Sbjct: 592 IEANPDLRDNENVPLTESVDDYFAREVLPHVPNAWIDTKKTDEQDKEVGIVGYEIPFNRH 651

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FY+Y P R L +IDA+L  V ++I  LL+E+
Sbjct: 652 FYEYVPPRSLTEIDADLDKVSSEIMQLLQEV 682


>gi|220933788|ref|YP_002512687.1| type I restriction-modification system, M subunit; N-6
           adenine-specific DNA methylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995098|gb|ACL71700.1| type I restriction-modification system, M subunit; N-6
           adenine-specific DNA methylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 655

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 305/675 (45%), Positives = 418/675 (61%), Gaps = 39/675 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++ A+F+W  A+ L GDFK + +G++ILPFTLLRRLEC L PT+ AV  +Y     S++ 
Sbjct: 6   STTASFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLAPTKQAVLAEYDKRKDSDLP 65

Query: 69  LESFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           +  F++ A  G  FYNTS   L++LG T   +NL++YI SFS  A+ IFE F F   + +
Sbjct: 66  MGPFLEKASGGLKFYNTSPMDLASLGETQVLDNLDTYIRSFSPAAREIFEHFGFHGFLEK 125

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++A LLY++ + F+  +L P    +  M  I+E LIRRF    +E A +  TPRD+VHL
Sbjct: 126 LDEANLLYQVIQRFASTDLSPQAHSNYEMGLIFEELIRRFAESSNETAGEHFTPRDIVHL 185

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            TALL    D   K +PG I T+YDPT GTGGFL++   ++       ++       GQE
Sbjct: 186 TTALLFT--DQQEKIAPGKIVTVYDPTAGTGGFLSEGEEYIHSISQDARVRVF----GQE 239

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE+HA+C+A MLI+  E D       NI+ G+TLS D    ++F + LSNPPFG  W+
Sbjct: 240 LNPESHAICMADMLIKGHEID-------NIKLGNTLSDDQLPAQQFDFMLSNPPFGVDWK 292

Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V+ EHK  G  GRFGPGLP++SDGS+LFLMHL +K+      G R  I+L+ SPL
Sbjct: 293 KVQKQVQDEHKLKGHAGRFGPGLPRVSDGSLLFLMHLMSKMRDAKEQGSRIGIILNGSPL 352

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR +LENDL+EAIVALPTD+F+ T IATY+W+LSN K  ER+G+VQLI
Sbjct: 353 FTGGAGSGESEIRRHILENDLLEAIVALPTDMFYNTGIATYVWVLSNHKRPERKGRVQLI 412

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           NATD+   +R   G KR+ + +D    I+ +Y + E  + S++ +   FGYRRI V RPL
Sbjct: 413 NATDMGDKMRKSLGSKRKYLTEDSIETIVRLYGAFEETETSKIFNTTDFGYRRITVERPL 472

Query: 485 RMSF-ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI--K 541
           +++F   D+T LA L+AD  W KL    +   LD L               F ++ I  +
Sbjct: 473 QLAFHPKDETRLAALQADKGWEKLDKALRQAILDALP-------------RFEEDKILSR 519

Query: 542 SNEAKTLKVKASKSFIVA-----FINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           S   K LKV  + + + A          G  D +A+ V    G+  P+ +L + ENVP  
Sbjct: 520 STFKKWLKVHMNGATLPAPAFKLLQKHLGEHDDQAE-VCKTKGQPEPNPDLRDNENVPLG 578

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           E I  YF REV+PHVPDA+ID+   DE+D ++G VGYEI FNR FYQY P R L++IDA+
Sbjct: 579 EDIHAYFAREVTPHVPDAWIDESKKDEQDGQVGIVGYEIPFNRHFYQYVPPRPLEEIDAD 638

Query: 657 LKGVEAQIATLLEEM 671
           L  V  +I  LL+E+
Sbjct: 639 LDQVSREIMALLQEV 653


>gi|120553176|ref|YP_957527.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120323025|gb|ABM17340.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 661

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 299/688 (43%), Positives = 417/688 (60%), Gaps = 44/688 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           MT+   + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT++       
Sbjct: 1   MTDDQTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60

Query: 54  -------AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                  AVREK L            ++ AG  F+N S  SL+TL  + T ++L SY+ S
Sbjct: 61  EHQAKPDAVREKLL------------LRAAGQQFFNASPLSLATLSDSQTADDLMSYVQS 108

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS +A+ IFE F F   + +L    LLY++ + F+ I+L P T+ +  M  I+E LIR+F
Sbjct: 109 FSQDAREIFEHFHFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKF 168

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
               +E A +  TPRD+VHL T+L+L   +   + +P  I T+YDPT GTGGFL++   +
Sbjct: 169 AESSNETAGEHFTPRDIVHLTTSLVLTGQEG--RLTPNSIVTIYDPTAGTGGFLSEGDEY 226

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +        +      HGQEL PE++A+C A MLI+  E         NI+ G+TLS D 
Sbjct: 227 IQQISESVTVSL----HGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSDDQ 275

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANK 345
               +F   LSNPPFG +W+K +  V  EHK+ G  GRFGPGLP++SDGS+LFLMHL +K
Sbjct: 276 LATNKFDLMLSNPPFGVEWKKVQKQVTDEHKHRGFDGRFGPGLPRVSDGSLLFLMHLVSK 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +     GG R  I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+T
Sbjct: 336 MRDAREGGSRIGIILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGIST 395

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF 464
           Y+W+LSN K  ERRGKVQLI+ATD  T +R   G KR+ +++  + +I+ +Y   +  K 
Sbjct: 396 YVWVLSNNKPAERRGKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKK 455

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S++     FGYRRI V RPL+++F   +  +AR+  +    K+    Q       + M  
Sbjct: 456 SKIFPIEAFGYRRITVERPLQLNFQTSEERIARIADEKAILKMDQEDQGNIHAACRAMNA 515

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
           +   Y   + F K    S     + + A +  + + +NA   +DP AD  TD  G    D
Sbjct: 516 KTV-YRNRKQFQKALKASLTDHQVYLGAPQ--LKSLLNALSERDPEADICTDSKGNPEAD 572

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T L +YENVP  ES+ DYFVREV PHVPDA+ID+   DEKD E+G VG+EI FNR FY++
Sbjct: 573 TGLRDYENVPLSESVYDYFVREVKPHVPDAWIDESKRDEKDGEVGIVGFEIPFNRHFYEF 632

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMA 672
            P R L++IDA+LK    +I  ++EE++
Sbjct: 633 TPPRPLEEIDADLKQCTDRIKQMIEELS 660


>gi|307720088|ref|YP_003891228.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978181|gb|ADN08216.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
          Length = 652

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 298/673 (44%), Positives = 421/673 (62%), Gaps = 36/673 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S++  IW  A+ L GD+K +D+GK+ILPFTLLRRLEC LEPTR  V  +  A     I +
Sbjct: 5   SISALIWSTADLLRGDYKQSDYGKIILPFTLLRRLECVLEPTRDDVLTENEARKNLGIPM 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F+ + +G+SFYNTS+Y+L+ L S  +N   NLESYI  FS NA+ IFE ++F++ I +
Sbjct: 65  EQFLTRKSGHSFYNTSKYTLTKLMSDPSNISQNLESYINDFSPNAREIFEKYEFTAQIDK 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L +A LLY I + F+ ++LHPDT+ +  M  ++E LIR+F  + +E A +  TPRD+V L
Sbjct: 125 LNEANLLYLIIEKFATVDLHPDTISNHAMGIVFEELIRKFAEQSNETAGEHFTPRDIVRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHG 244
            T+LL   DD +  +  G++R+LYDPT GTGGFL+    +V      H++ P   LV  G
Sbjct: 185 TTSLLFSTDDDVLTKK-GIVRSLYDPTAGTGGFLSSGSEYV------HELNPDATLVTFG 237

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL  E++A+C A M+I+ ++ +       NI+ G+TLS D     +F Y LSNPPFG +
Sbjct: 238 QELNGESYAICKADMMIKGVQVE-------NIKHGNTLSDDQLGENKFDYMLSNPPFGVE 290

Query: 305 WEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  V+ E+ + G  GRFGPGLP++SDGS+LFL+HL +K+     GG R  I+L+ S
Sbjct: 291 WKKVEKVVKAENAEQGYNGRFGPGLPRVSDGSLLFLLHLVSKMRPKREGGSRIGIILNGS 350

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIRR++LEND +EAIVA+P D+FF T IATY+WILSN K E R+G+VQ
Sbjct: 351 PLFTGGAGSGESEIRRYILENDYLEAIVAMPNDMFFNTGIATYIWILSNNKPEHRQGEVQ 410

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LINA+ +  ++R   G KR+ +++ Q   I+ IY      K S++ +   FGYRRI V R
Sbjct: 411 LINASSMGNAMRKSLGSKRKFLDETQISDIVRIYGENAAAKISKIFNITDFGYRRITVER 470

Query: 483 PLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES---FVKE 538
            L++S F  D   L  L+ D  + K+  L      +IL  +       G  ES     + 
Sbjct: 471 SLQLSYFPHDADKLESLQNDKVFVKMKELGA----EILTAL-------GAIESDKIMSRT 519

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
             K+  +K +  K S +            D  A+   D  G+   + +L +YEN+P  E 
Sbjct: 520 EFKNELSKKMTSKLSATQFKLVQKHISMHDDEAELCKDSKGKLEANADLRDYENIPLSED 579

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I +YF REV+PHVP A+ID+   D KD E+G VGYEI FNR FY+Y P R L++IDAEL+
Sbjct: 580 INEYFAREVTPHVPLAWIDEKKRDAKDGEVGIVGYEIPFNRHFYEYAPPRPLEEIDAELE 639

Query: 659 GVEAQIATLLEEM 671
            + A+I  +L E+
Sbjct: 640 TLNAEIMEMLREI 652


>gi|120553352|ref|YP_957703.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120323201|gb|ABM17516.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 661

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 296/690 (42%), Positives = 415/690 (60%), Gaps = 48/690 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT++       
Sbjct: 1   MTHDKTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60

Query: 54  -------AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                  AVREK L            ++ A   F+N S  SL+TL  + T ++L SY+ S
Sbjct: 61  EHQTKPDAVREKLL------------LRAADQQFFNASPLSLATLSDSQTADDLMSYVQS 108

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS +A+ IFE F F   + +L    LLY++ + F+ I+L P T+ +  M  I+E LIR+F
Sbjct: 109 FSQDAREIFEHFHFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKF 168

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
               +E A +  TPRD+VHL T+L+L   +     +P  I T+YDPT GTGGFL++   +
Sbjct: 169 AESSNETAGEHFTPRDIVHLTTSLVLTGQENRL--TPNSIVTIYDPTAGTGGFLSEGDEY 226

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +        +      HGQEL PE++A+C A MLI+  E         NI+ G+TLS D 
Sbjct: 227 IQQISESVTVSL----HGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSDDQ 275

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANK 345
               +F   LSNPPFG +W+K +  V  EHK+ G  GRFGPGLP++SDGS+LFLMHL +K
Sbjct: 276 LATNKFDLMLSNPPFGVEWKKVQKQVTDEHKHRGFAGRFGPGLPRVSDGSLLFLMHLVSK 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +     GG R  I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+T
Sbjct: 336 MRDAREGGSRIGIILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGIST 395

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF 464
           Y+W+LSN K  ER+ KVQLI+ATD  T +R   G KR+ +++  + +I+ +Y   +  K 
Sbjct: 396 YVWVLSNNKPAERKSKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKK 455

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-M 523
           S++     FGYRRI V RPL+++F   +  L R+  +   +K+    Q   L   + M  
Sbjct: 456 SKIFPIEAFGYRRITVERPLKLNFQTSEERLQRIADEKAIQKMDQEDQDKILAACRAMDA 515

Query: 524 QQIY-PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
           +++Y      +  +K S+  ++     V  S   + A +NA   +DP AD  TD  G   
Sbjct: 516 EKVYRNRKQFQKALKTSLTDHQ-----VYLSAPQLKALLNALSERDPEADICTDSKGNPE 570

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
            DT L +YENVP  ES+ DYF REV PHVPD +ID+   DEKD E+G VG+EI FNR FY
Sbjct: 571 ADTGLRDYENVPLSESVYDYFEREVKPHVPDVWIDESKRDEKDGEVGIVGFEIPFNRHFY 630

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           ++ P R L++IDA+LK    +I  ++EE++
Sbjct: 631 EFTPPRPLEEIDADLKQCTDRIKQMIEELS 660


>gi|327479500|gb|AEA82810.1| N-6 DNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 660

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/684 (42%), Positives = 417/684 (60%), Gaps = 41/684 (5%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFG 63
           T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT+ AV RE Y   G
Sbjct: 3   TENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKEAVIRESYAQEG 62

Query: 64  GSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             ++  E  + + AG  F+N S+ +L TL  T T  +L SY+ SFS +A+ IFE F F  
Sbjct: 63  RPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFED 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPRD
Sbjct: 123 FVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRD 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++        +      
Sbjct: 183 IVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQSISQQVTVSL---- 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPP 300
           HGQEL PE++A+C A MLI+  + +       NI+ G+TLS D  TG   H+   LSNPP
Sbjct: 237 HGQELNPESYAICKADMLIKGQKVE-------NIKLGNTLSDDQLTGAEHHFDFMLSNPP 289

Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I+
Sbjct: 290 FGVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGII 349

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K  ER+
Sbjct: 350 LNGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAERQ 409

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GKVQLI+ +  +  +R   G KR+ I D+Q  +++ +Y   E    S++     FGYRRI
Sbjct: 410 GKVQLIDGSQHFGKMRKSLGSKRQYITDEQIDELVRLYGRFEETAQSKIFPVEAFGYRRI 469

Query: 479 KVLRPLRMSF---------ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
            V RPLR++F         +L++  + +LEA    R +  L Q+   ++L    +Q    
Sbjct: 470 TVERPLRLNFQTSAERIEKVLEEKAIEKLEAPARQRLIEAL-QAMDANVLHRNREQF--- 525

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
                 +K+++ +++     V  S   + A +NA   +DP AD +  V G+   D  L +
Sbjct: 526 ---SKLLKKTLSAHD-----VSPSTPELKAILNALSERDPEAD-ICLVKGKPEADAGLRD 576

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            ENVP  ES+ DYF REV PHVPDA+ID+   D +D E+G VG+EI FNR FY +QP R 
Sbjct: 577 NENVPLGESVYDYFEREVKPHVPDAWIDESKTDAQDGEVGVVGFEIPFNRHFYVFQPPRP 636

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L DID +LK    +I  ++E ++ 
Sbjct: 637 LADIDRDLKACTDRIKQMIEGLSA 660


>gi|146281042|ref|YP_001171195.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas stutzeri A1501]
 gi|145569247|gb|ABP78353.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas stutzeri A1501]
          Length = 658

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/673 (43%), Positives = 416/673 (61%), Gaps = 21/673 (3%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVREKYLAFG 63
           T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC L PT+   V++ +   G
Sbjct: 3   TENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLAPTKEEVVKQTFAQEG 62

Query: 64  GSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +   E F+ + AG  F+N S  +L TL  T T  +L SY+ +FS +A+ IFE F F  
Sbjct: 63  RPDTVREMFLLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQAFSKDAREIFEHFHFED 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPRD
Sbjct: 123 FVQQLASANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRD 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++       K+   L  
Sbjct: 183 IVHLTTSLVITGQDG--KLQPNSIVTIYDPTAGTGGFLSEGDEYIQSISD--KVSVSL-- 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           HGQEL PE++A+C A MLI+       +D++ +I+ G+TLS D   G+RF + LSNPPFG
Sbjct: 237 HGQELNPESYAICKADMLIKG------QDVA-SIKLGNTLSDDQLAGQRFDFMLSNPPFG 289

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L+
Sbjct: 290 VEWKKVQKQITDEHSHKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIILN 349

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR+LL+NDL+EAIVALPTD+F+ T IATY+WILSN K   R+GK
Sbjct: 350 GSPLFTGGAGSGESEIRRYLLQNDLVEAIVALPTDMFYNTGIATYVWILSNHKVAARKGK 409

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+ +  ++ +R   G KR+ I +DQ  +++ +Y S E    S++    TFGYRRI V
Sbjct: 410 VQLIDGSQHYSKMRKSLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIETFGYRRITV 469

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
            RPLR++F +    + ++  +    KL     S     LK M   +  +   E F K   
Sbjct: 470 ERPLRLNFQICDERIGKVIEEKLILKLGNDAWSLIQAALKSMDSSVL-HRNREQFSKLLK 528

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           K+  A ++ + A +  + A +NA   +DP AD  T   G+   D+ L + ENVP  ES+ 
Sbjct: 529 KALTAHSVGLSAPE--LKALLNALSERDPEADICT-TKGQPEADSGLRDNENVPLGESVF 585

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           DYF REV PHVPDA+ID    D +D E+G VG+EI FNR FY +QP R L DID +LK  
Sbjct: 586 DYFEREVKPHVPDAWIDTSKTDGQDGEVGVVGFEIPFNRHFYVFQPPRSLADIDRDLKAC 645

Query: 661 EAQIATLLEEMAT 673
             +I  ++E ++ 
Sbjct: 646 TDRIKQMIEGLSA 658


>gi|152988798|ref|YP_001345471.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7]
 gi|150963956|gb|ABR85981.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7]
          Length = 658

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/673 (42%), Positives = 410/673 (60%), Gaps = 21/673 (3%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFG 63
           T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPTR AV RE Y   G
Sbjct: 3   TENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTREAVIRESYAQEG 62

Query: 64  GSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             ++  E  + + AG  F+N S+ +L TL  T T  +L SY+ SFS +A+ IFE F F  
Sbjct: 63  RPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFED 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPRD
Sbjct: 123 FVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRD 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++        +      
Sbjct: 183 IVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQSISQQVTVSL---- 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           HGQEL PE++A+C A MLI+       +D++ +I+ G+TLS D     RF + LSNPPFG
Sbjct: 237 HGQELNPESYAICKADMLIKG------QDVT-SIKLGNTLSDDQLADSRFDFMLSNPPFG 289

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I+L+
Sbjct: 290 VEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGIILN 349

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K   R+GK
Sbjct: 350 GSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAARQGK 409

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+ +  +  +R   G KR+ + ++Q   ++ +Y   E    S++     FGYRRI V
Sbjct: 410 VQLIDGSQHFAKMRKSLGSKRQYLTEEQIDALVRLYGRFEETAQSKIFPVEAFGYRRITV 469

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
            RPLR++F +    + ++  +    KL    +   ++ L+ M   +  +   E F K   
Sbjct: 470 ERPLRLNFQVSSQRIEKVLEEKAIEKLEAPARQRLIEALQAMDASVV-HRNREQFSKLLK 528

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           K+  A    V  S   + A ++    +D  AD +  V G+   D  L + ENVP  ES+ 
Sbjct: 529 KTLSAH--DVSPSTPELKAILSGLSERDSEAD-ICMVKGQPEADAGLRDNENVPLGESVY 585

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           DYF REV PHV DA+ID+   DE+D E+G VG+EI FNR FY +QP R L++ID +LKG 
Sbjct: 586 DYFEREVKPHVADAWIDESKRDEQDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRDLKGC 645

Query: 661 EAQIATLLEEMAT 673
             +I  ++E ++ 
Sbjct: 646 TDRIKQMIEGLSA 658


>gi|114563774|ref|YP_751287.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400]
 gi|114335067|gb|ABI72449.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400]
          Length = 683

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 298/700 (42%), Positives = 407/700 (58%), Gaps = 51/700 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A  +W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+  V  KY A  
Sbjct: 1   MTNNFSQTAALLWSVADILRGDFKQSQYGRIILPFTLLRRLECVLEATKPDVLAKYEAVK 60

Query: 64  GSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              ++ +       A  SFYNTS+  L  LG     +NLESYI SFS NA+ IFE FDF 
Sbjct: 61  AMPLEAQDKLLTHTAQLSFYNTSKMDLHRLGEMGIASNLESYIQSFSPNAREIFEHFDFF 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +TI +L +A LLYK+ K F+   L P+ + +  M  ++E LIRRF    +E A +  TPR
Sbjct: 121 NTIDKLAEADLLYKVAKQFANAPLSPENISNYGMGLVFEELIRRFAESSNETAGEHFTPR 180

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+V L T+L+   DD +  ++ G++R++YDPT GTGGFL+  M ++ +          L 
Sbjct: 181 DIVRLTTSLVFSNDDDVLTQA-GLVRSIYDPTAGTGGFLSSGMEYLHELNEKAS----LS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A MLI+  + D       NI+ G+TLS DL    +F Y LSNPPF
Sbjct: 236 AFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDLLRNDKFDYMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+K +  +  E+ + G  GRFG GLP++SDGS+LFLMHL +K+     GG R  I+L
Sbjct: 289 GVDWKKIQKFINTEYTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPKHEGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           + SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+WILS+ K      
Sbjct: 349 NGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWILSSNKGASHNG 408

Query: 418 -RRGKVQLINATD-----------------------LWTSIRNE-GKKRRIINDDQRRQI 452
            R+GKVQLINA+                         +  +R   G KR+ + +D    I
Sbjct: 409 ARKGKVQLINASKERAKTGGRGRSGGGESDEVVENIFYAPMRKSLGSKRKELTEDGIETI 468

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLH 511
           +  Y       FS++ DY  FGYRRI V RPL+++ +  D+T +A L+AD  W KL    
Sbjct: 469 VKTYGQFIENDFSKIFDYHVFGYRRITVERPLQLAIYPKDQTRVAALQADNAWDKLDQAV 528

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
           Q   +D L    +        ++F+KE +K    K   +K S       +   G  D  A
Sbjct: 529 QYSVIDSLAGFTED--KLLSRDAFLKELMK----KLNGIKLSSVQQKLIVKHLGEHDDDA 582

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
             +    G    + +L ++ENVP  ESI  YF REV PHVP+A+IDK   D KD E+G V
Sbjct: 583 Q-LCKAKGRVEANPDLRDFENVPLTESIYKYFDREVIPHVPNAWIDKTKTDPKDHEVGIV 641

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI FNR FY+Y   R+L+DIDA+L  V  +I  LL E+
Sbjct: 642 GYEIPFNRHFYEYASPRELEDIDADLDIVSTEIMQLLNEV 681


>gi|56459751|ref|YP_155032.1| Type I restriction-modification system methyltransferase subunit
           [Idiomarina loihiensis L2TR]
 gi|56178761|gb|AAV81483.1| Type I restriction-modification system methyltransferase subunit
           [Idiomarina loihiensis L2TR]
          Length = 660

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/677 (42%), Positives = 411/677 (60%), Gaps = 27/677 (3%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAF 62
           T + +  A+FIW  A+ L G FK + +G+VILPFTLLRRLEC L P +  V E  K    
Sbjct: 3   TENYSQTASFIWSVADLLRGHFKQSQYGRVILPFTLLRRLECVLAPNKQKVLEAAKQHQN 62

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               +  +  ++ +   FYN S  +L+TL  T T  +L SY+ SFS +A+ IFE F+F  
Sbjct: 63  KPDAVREQLLLRESQNDFYNASSLTLATLSDTQTAEDLISYVQSFSSSAREIFEHFNFEE 122

Query: 123 TIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            + +L +A LLY+I + F S I+L  D + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 123 FVLKLAEADLLYQITQQFGSKIDLSTDNISNYGMGLIFEELIRKFAESSNETAGEHFTPR 182

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D VH AT+LL+   + +   SP  I T+YDPT GTGGFL+++  ++        +     
Sbjct: 183 DCVHAATSLLMTGQEEVL--SPNSIITIYDPTAGTGGFLSESEEYIQSISEKVTVKLF-- 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL  E++A+C A M+I+  E D       NI+ G+TLS D    ++F Y L+NPPF
Sbjct: 239 --GQELNSESYAICKADMMIKSQEVD-------NIKLGNTLSNDQLAHEKFKYMLANPPF 289

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+  +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    NGG R  I+L
Sbjct: 290 GVDWKASQRVVNDEHKVKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDTRNGGSRIGIIL 349

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL+NDL+EAIVALP+D+FF T I+TY+WILSN K  ER+G
Sbjct: 350 NGSPLFTGSAGSGESEIRRYLLQNDLVEAIVALPSDMFFNTGISTYIWILSNAKKPERKG 409

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QLI+ +D +  +R   G KR+ + ++   +++ +Y + E  K S++     FGYRR+ 
Sbjct: 410 KLQLIDGSDAFAKMRKSLGSKRKYLTEENINELVRLYGAVEETKNSKVFPNEAFGYRRVT 469

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP---YGWAESFV 536
           + RPLR++F   +  +ARL+ +   +KL     S     LK  +QQI     +   + F 
Sbjct: 470 IERPLRLNFQASEERVARLDDEKALQKLKAEDFS----QLKQAIQQIDADTLFINRDDFT 525

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           +      +   L + A++  + A +NA   +D  AD   D  G    D+ L +YENVP  
Sbjct: 526 RTLNAQLKVSDLNLTAAQ--LKAVLNALSERDSDADVCADKKGNPEADSGLRDYENVPLT 583

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           + I +YF R+V PHVPDA+ID+   DE+D EIG VG+EI FNR FY ++P R L++IDA+
Sbjct: 584 DDIYEYFERDVKPHVPDAWIDESKRDEQDGEIGIVGFEIPFNRHFYVFEPPRPLEEIDAD 643

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 644 LKQCTDKIKQMIEELSA 660


>gi|77166145|ref|YP_344670.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|254436238|ref|ZP_05049745.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
 gi|76884459|gb|ABA59140.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|207089349|gb|EDZ66621.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
          Length = 661

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 290/676 (42%), Positives = 412/676 (60%), Gaps = 24/676 (3%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT+  V ++      
Sbjct: 3   TENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKDKVVQQATVHQH 62

Query: 65  SNIDLESFV--KVAG-YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
               +   +  + AG   F+N S  +L TL  T T  +L SY  SFS +A  IFE F+F 
Sbjct: 63  KPDHVREMLLRRAAGDLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEFE 122

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + + +L  A LLY++ + F+  +L P  + +  M  I+E LIRRF    +E A +  TPR
Sbjct: 123 NFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTPR 182

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K +P  I T+YDPT GTGGFL++   ++       K+   L 
Sbjct: 183 DIVHLTTSLVITGQDD--KLAPNRIVTIYDPTAGTGGFLSEGDEYIQSIS--EKVSVSL- 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299
            HGQEL PE++A+C A MLI+       +D++ NI+ G+TLS D  TG   RF + LSNP
Sbjct: 238 -HGQELNPESYAICKADMLIKG------QDVA-NIKLGNTLSNDQLTGPEHRFDFMLSNP 289

Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG +W+K +  +  EHK+ G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I
Sbjct: 290 PFGVEWKKVQKQITGEHKHKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGI 349

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR+LL++DL+EAIVALPTD+F+ T IATY+W+LSN K  ER
Sbjct: 350 ILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIVALPTDMFYNTGIATYVWLLSNHKPAER 409

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           RGKVQLI+ +  +  +R   G KR+ +  +Q  +++ +Y + E    S++     FGYRR
Sbjct: 410 RGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVCLYGAFEETPQSKIFPINAFGYRR 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I V RPLR++F      +  +  +   +KL    +    D L  M      Y   E F K
Sbjct: 470 ITVERPLRLNFQASAERIDNVLQEKAIQKLDDTARQQLADALGAMDPSPL-YRNREQFAK 528

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
              K+  A  + +   +    A +N  G++DP+AD  T   G+  PDT L + ENVP  E
Sbjct: 529 LLKKTLTAHGVSLSTPEQ--KALLNGLGKRDPKADICT-TKGKPEPDTGLRDNENVPLGE 585

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           S+ DYF REV PHVPDA+I++   D  D E+G VG+EI FNR FY +QP R L++ID +L
Sbjct: 586 SVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRDL 645

Query: 658 KGVEAQIATLLEEMAT 673
           K    +I  ++EE++ 
Sbjct: 646 KACTDRIKQMIEELSA 661


>gi|300113141|ref|YP_003759716.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299539078|gb|ADJ27395.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 662

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/676 (42%), Positives = 408/676 (60%), Gaps = 24/676 (3%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT++ V ++      
Sbjct: 4   TENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKAKVVQQATVHQH 63

Query: 65  SNIDLESFV---KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
               +   +     +G  F+N S  +L TL  T T  +L SY  SFS +A  IFE F+F 
Sbjct: 64  KPDHVREMLLRRAASGLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEFE 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + + +L  A LLY++ + F+  +L P  + +  M  I+E LIRRF    +E A +  TPR
Sbjct: 124 NFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K +P  I T+YDPT GTGGFL++   ++       K+   L 
Sbjct: 184 DIVHLTTSLVITGQDD--KLAPNRIVTIYDPTAGTGGFLSEGDEYIQSIS--EKVSVSL- 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299
            HGQEL PE++A+C A MLI+       +D++ NI+ G+TLS D  TG   RF + LSNP
Sbjct: 239 -HGQELNPESYAICKADMLIKG------QDVA-NIKLGNTLSNDQLTGPEHRFDFMLSNP 290

Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG +W+K +  +  EHK+ G  GRFGPGLP++ DGS+LFL+HL +K+  P +GG R  I
Sbjct: 291 PFGVEWKKVQKQISGEHKHKGFNGRFGPGLPRVPDGSLLFLLHLVSKMRDPRDGGSRIGI 350

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR+LL++DL+EAI+ALPTD+F+ T IATY+W+LSN K  ER
Sbjct: 351 ILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIIALPTDMFYNTGIATYVWLLSNHKPAER 410

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           RGKVQLI+ +  +  +R   G KR+ +  +Q  +++ +Y + E    S++     FGYRR
Sbjct: 411 RGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVRLYGAFEETPQSKIFPINAFGYRR 470

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I V RPLR++F      +  +  +   +KL    +    D L  M      Y   E F K
Sbjct: 471 ITVERPLRLNFQASAARIDNVLREKAIQKLDDTARQQLADALGAMDPSPL-YRNREQFAK 529

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
              K+  A  + +   +    A +N  G +DP AD +    G+  PDT L + ENVP  E
Sbjct: 530 LLKKTLTAHGVSLSTPEQ--KALLNGLGERDPEAD-ICTTKGKPEPDTGLRDNENVPLGE 586

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           S+ DYF REV PHVPDA+I++   D  D E+G VG+EI FNR FY +QP R L+ ID +L
Sbjct: 587 SVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEAIDRDL 646

Query: 658 KGVEAQIATLLEEMAT 673
           K    +I  ++EE++ 
Sbjct: 647 KACTDRIKQMIEELSA 662


>gi|282901857|ref|ZP_06309763.1| Type I restriction-modification system protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193253|gb|EFA68244.1| Type I restriction-modification system protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 676

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/683 (41%), Positives = 404/683 (59%), Gaps = 37/683 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE- 70
            +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  +     +L+ 
Sbjct: 8   VSFIWSVADLIRDTFKRGKYQDVILPFTVLRRLDCVLEPTKVEVLEAYNKYKDDLDNLDP 67

Query: 71  SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              K +G++FYNTS Y    L     +   NL+ YI SFS N + + E FDF +TI +LE
Sbjct: 68  QLCKKSGFAFYNTSRYYFEKLLDDPKHLTANLKLYINSFSGNMREVLEKFDFPNTIDKLE 127

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           ++ LL+ + + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+V+ L  
Sbjct: 128 QSDLLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPREVIQLMV 187

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+   D A   +   + RT+YDP CG+GG LT A + + +      +       GQE+ 
Sbjct: 188 NLIFSQDKAQLSQE-YITRTVYDPCCGSGGMLTSAKDRILELNPKADV----FLFGQEVN 242

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           PET A+C + + ++ ++    RD ++NI+ GSTLS D  + K F Y L+NPP+GK W++D
Sbjct: 243 PETFAICKSDLYMKSVDG---RD-AENIKFGSTLSNDQHSDKTFDYLLANPPYGKDWKRD 298

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           KDAVE E +     RF  G P+ISDG +LFL  + ++++    GG R AIV++ SPLF G
Sbjct: 299 KDAVEAEAQKAG-SRFSAGTPRISDGQLLFLQQMLSRMKGVEQGGSRVAIVMNGSPLFTG 357

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AGSGESEIRRW+LEND +EAIVALP  LF+ T IATY+W+L+N K +ER+GKVQLINA+
Sbjct: 358 DAGSGESEIRRWILENDWLEAIVALPEQLFYNTGIATYIWVLTNHKAKERKGKVQLINAS 417

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           D W  +R   G KRR I  +Q ++I  I+ S    + S++ D   FGYR++ V RPL+++
Sbjct: 418 DFWVPMRKSLGSKRREIKSEQIQEITKIFESFAPSEVSKIFDSEDFGYRKVTVERPLKLN 477

Query: 488 FILDKTGLARLEADITWRKLSPL-----------------HQSFWLDILKPMMQQIYP-Y 529
           F      + RL+    +  L+                    Q   L +L+ +   +Y   
Sbjct: 478 FQASPERIERLKEQSAFVALAVSKKKSAEGKAIEEHAGRDQQKLILAMLQTLPDTLYKDR 537

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
              E  +K++IKS E  T+     K    A + A   +D  A   +D  G   PD+ L +
Sbjct: 538 EQFEKVLKKAIKS-EGVTVAAPVYK----AILTALSERDETAKVCSDRQGNPEPDSELRD 592

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            ENVP  E + +YF REV+PHVPDA+I +   D KD EIG+VGYEINFNR+FY+YQP R 
Sbjct: 593 TENVPLKEDVAEYFEREVTPHVPDAWISEGVRDAKDGEIGKVGYEINFNRYFYKYQPPRA 652

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L++I+A++K VE +I  +L E+A
Sbjct: 653 LEEIEADIKAVEGEILEMLREVA 675


>gi|218248664|ref|YP_002374035.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218169142|gb|ACK67879.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 676

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/683 (40%), Positives = 406/683 (59%), Gaps = 39/683 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  + G   +L+ 
Sbjct: 8   VSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGKLENLDP 67

Query: 72  FV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            + K +G++FYN S Y    L     +   NL+ YI SFS N + + E FDF +TI +LE
Sbjct: 68  ILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPNTIDKLE 127

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +A LL+++ + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+V+ L  
Sbjct: 128 EADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPREVIRLMV 187

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           +LLL  D    K++  + RT+YDP CG+GG LT A   + +   +  +       GQE+ 
Sbjct: 188 SLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPNATV----FLFGQEVN 242

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           PET A+C + + ++   S+  +D + NI+ GSTLS D  + K F Y L+NPP+GK W++D
Sbjct: 243 PETFAICKSDLYMK---SEDGKD-ADNIKFGSTLSNDQHSDKSFDYLLANPPYGKDWKRD 298

Query: 309 KDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           KDAVE E  K G   RF  G P+ISDG +LFL  +  +++ P NGG R AIV++ SPLF 
Sbjct: 299 KDAVETEAQKTG--SRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNGSPLFT 356

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSGESEIRRW+LEND +EAI+ALP  LF+ T I+TY+WILSN+K  +++ KVQLIN 
Sbjct: 357 GDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKVQLING 416

Query: 428 TDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           +D W ++R   G KRR I+ +   +I  I+   E  + S+  +   FGYR+I + RPLR+
Sbjct: 417 SDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIERPLRL 476

Query: 487 SFILDKTGLARLEADITW------RKLSP-----------LHQSFWLDILKPMMQQIYP- 528
           +F +    + R++    +      +K +P             Q   L +L  +  ++Y  
Sbjct: 477 NFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSDELYKD 536

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
               E  +K++ K    + + VK   +   A +     KD  A+   D +G   PDT L 
Sbjct: 537 RKPLELLLKKAFK---VENVAVKG--ALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  E I DYF REV PHV DA+I++   D KD  +G+VGYEINFNR+FYQYQP R
Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           +L +I+ +++ VE +I  +L+EM
Sbjct: 652 ELSEIEKDIQQVEGEILAMLKEM 674


>gi|257061734|ref|YP_003139622.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
 gi|256591900|gb|ACV02787.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
          Length = 676

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/686 (40%), Positives = 407/686 (59%), Gaps = 45/686 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  + G   +L+ 
Sbjct: 8   VSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGKLENLDP 67

Query: 72  FV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            + K +G++FYN S Y    L     +   NL+ YI SFS N + + E FDF +TI +LE
Sbjct: 68  ILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPNTIDKLE 127

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +A LL+++ + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+V+ L  
Sbjct: 128 EADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPREVIRLMV 187

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           +LLL  D    K++  + RT+YDP CG+GG LT A   + +   +  +       GQE+ 
Sbjct: 188 SLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPNATV----FLFGQEVN 242

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           PET A+C + + ++   S+  +D + NI+ GSTLS D  + K F Y L+NPP+GK W++D
Sbjct: 243 PETFAICKSDLYMK---SEDGKD-ADNIKFGSTLSNDQHSDKSFDYLLANPPYGKDWKRD 298

Query: 309 KDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           KDAVE E  K G   RF  G P+ISDG +LFL  +  +++ P NGG R AIV++ SPLF 
Sbjct: 299 KDAVETEAQKTG--SRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNGSPLFT 356

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSGESEIRRW+LEND +EAI+ALP  LF+ T I+TY+WILSN+K  +++ KVQLIN 
Sbjct: 357 GDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKVQLING 416

Query: 428 TDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           +D W ++R   G KRR I+ +   +I  I+   E  + S+  +   FGYR+I + RPLR+
Sbjct: 417 SDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIERPLRL 476

Query: 487 SFILDKTGLARLEADITW------RKLSP-----------LHQSFWLDILKPMMQQIY-- 527
           +F +    + R++    +      +K +P             Q   L +L  +  ++Y  
Sbjct: 477 NFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSDELYKD 536

Query: 528 --PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
             P+   E  +K++ K    + + VK   +   A +     KD  A+   D +G   PDT
Sbjct: 537 RNPF---ELLLKKAFK---VENVAVKG--ALFKAILTGLSEKDETAEICRDKDGNPEPDT 588

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
            L + ENVP  E I DYF REV PHV DA+I++   D KD  +G+VGYEINFNR+FYQYQ
Sbjct: 589 ELRDTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQ 648

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671
           P R+L +I+ +++ VE  I  +L+EM
Sbjct: 649 PPRELSEIEKDIQQVEGAILAMLKEM 674


>gi|332975486|gb|EGK12376.1| N-6 DNA methylase [Desmospora sp. 8437]
          Length = 684

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/684 (41%), Positives = 394/684 (57%), Gaps = 46/684 (6%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES- 71
           NFIW  AE L GD+K +++GKV+LPFT+LRRL+C L PT++ V  K     G  +D E  
Sbjct: 22  NFIWSIAEILRGDYKQSEYGKVVLPFTVLRRLDCVLSPTKAQVLAKMEEIQGMGLDPEQA 81

Query: 72  ---FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                 V    F NTS +   TL +   N   NL++YI  FS  A+ I + F+F   I R
Sbjct: 82  EPVLTSVTDERFCNTSPFDFQTLKAEPDNLAENLKAYIRGFSREARDIIDYFNFHVQIDR 141

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LE+A LLY + + F+ I+LHPD V +  M  I+E LIRRF  + +E A +  TPR+V+ L
Sbjct: 142 LEEADLLYLVVERFAAIDLHPDRVSNLEMGYIFEELIRRFSEQSNETAGEHFTPREVIRL 201

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL + D+       G+IRTLYDP CGTGG L+ A  ++ +     +    L   GQE
Sbjct: 202 MVNLLFNEDEEGELNRKGIIRTLYDPACGTGGMLSVAEEYLKELNDQAQ----LKVFGQE 257

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  E++A+C A ML++    DP R     I+ G++ + D    ++F Y LSNPPFG +W+
Sbjct: 258 LNAESYAICKADMLLKG--QDPSR-----IKFGNSFTHDGLAHEKFDYMLSNPPFGVEWK 310

Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K + A+E EHK  G  GRFG GLP++SDGS+LFL H+ +K++ P  GG R AIV + SPL
Sbjct: 311 KVQRAIEDEHKQQGYAGRFGAGLPRVSDGSLLFLQHMISKMKSPEEGGSRLAIVFNGSPL 370

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G A SGES IRRW++END +EAIVALP  LF+ T I+TY+WI++NRK   R+GK+QLI
Sbjct: 371 FTGGAESGESNIRRWIIENDWLEAIVALPDQLFYNTGISTYVWIVTNRKRPARKGKIQLI 430

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           N    + ++R   G KR  +  D   +I  I+     GK+S++ D   FGYRRI V RPL
Sbjct: 431 NGVKFFQTMRKSLGNKRHELGQDHIDEISRIHGEFREGKYSKIFDNADFGYRRITVERPL 490

Query: 485 RMSFILDKTGLARLEADITWRKLS----------------PLHQSFWLDILKPMMQQIYP 528
           R+   + + G+ RL     ++ L+                   Q   L  L  M+ +   
Sbjct: 491 RLRIQVTEKGIQRLTEQTPFQNLAKSRKKGAAGEKEIADGKAQQEAILKTLGGMVTEKV- 549

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           Y   ++F+KE       K   VK + S   A + A G +D  A    D  G   PD  L 
Sbjct: 550 YTDRDAFLKEL--KGVFKEQGVKLTASIQKAILAACGERDETAQVCKDSKGNVEPDPELR 607

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           +YENVP  E I DY  REV PHVPDA+I        D+E  +VGYEI F R FY+Y+P R
Sbjct: 608 DYENVPLKEEIHDYMEREVKPHVPDAWI--------DEEKTKVGYEIPFTRHFYEYKPLR 659

Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672
            L++IDAE++ +E +I  +L E+A
Sbjct: 660 PLEEIDAEIQALEKEILGMLGEIA 683


>gi|126664814|ref|ZP_01735798.1| N-6 DNA methylase [Marinobacter sp. ELB17]
 gi|126631140|gb|EBA01754.1| N-6 DNA methylase [Marinobacter sp. ELB17]
          Length = 658

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/685 (41%), Positives = 412/685 (60%), Gaps = 53/685 (7%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS--------------A 54
           + +A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT+               A
Sbjct: 7   SQIAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKDQVLVGARAHVDKPDA 66

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           VREK L            ++ A  +F+N S  SL +L  T T ++L SY+ SFS +A+ I
Sbjct: 67  VREKLL------------LREAEQTFFNASPLSLGSLSDTQTADDLMSYVQSFSQDAREI 114

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           FE F F   + +L    LLY++ + F+ I+L+P  + +  M  I+E LIR+F    +E A
Sbjct: 115 FEHFHFEDFVQQLSANNLLYQVVQRFASIDLNPKRISNFGMGLIFEELIRKFAESSNETA 174

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPRD+VHL T+L+L   +   K  P  I T+YDPT GTGGFL++   ++       
Sbjct: 175 GEHFTPRDIVHLTTSLVLTGQE--HKLQPNSIVTIYDPTAGTGGFLSEGDEYIQQVSD-- 230

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K+   L  HGQEL PE++A+C A MLI+  + +        I+ G+TLS D     +   
Sbjct: 231 KVTVSL--HGQELNPESYAICKADMLIKGQKVE-------QIKLGNTLSDDQLYDLKADI 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG
Sbjct: 282 MLSNPPFGVEWKKVQKQVTDEHKFKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGG 341

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R  I+L+ SPLF G AGSGESEIRR+LL++D++EAIVALPTD+F+ T I+TY+WILSN 
Sbjct: 342 SRIGIILNGSPLFTGGAGSGESEIRRYLLQSDMVEAIVALPTDMFYNTGISTYIWILSNN 401

Query: 414 KTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  ER+GKVQLI+A+D  + +R   G KR+++++  + +I+ +Y   +  + S++     
Sbjct: 402 KPTERKGKVQLIDASDRASKMRKSLGSKRQLVSETDQDEIVRLYGEFQETEKSKIFPNDA 461

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM----MQQIYP 528
           FGYRRI V RPLR++F      +AR+  +   +KL    Q   L   + +    + Q  P
Sbjct: 462 FGYRRITVERPLRLNFQTSDERIARITEEKAIQKLEEEEQEKILAACRAIDSNTLYQNRP 521

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
               +  +K ++ +++     V      + A +NA   +DP AD + +  G   PD  L 
Sbjct: 522 R--FQKLLKAALTNHQ-----VYPGTPQLKALMNALSERDPEAD-ICESKGNPEPDGGLR 573

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  ES+ DYF REV PHVPDA+ID+   DE+D E+G VG+EI FNR FY + P R
Sbjct: 574 DNENVPLGESVYDYFKREVIPHVPDAWIDESKTDEQDGEVGIVGFEIPFNRHFYVFTPPR 633

Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673
            L +IDA+LK    +I  ++E ++ 
Sbjct: 634 PLDEIDADLKQCTDRIKQMIEGLSA 658


>gi|257791268|ref|YP_003181874.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257475165|gb|ACV55485.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 691

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 283/687 (41%), Positives = 400/687 (58%), Gaps = 30/687 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A    N IW  A  +    +  D+ K+ILPF +LRR ECALEPTR+AV  +  A G  +
Sbjct: 5   TAFDYVNEIWSIANYVRDVIRPADYNKLILPFAVLRRFECALEPTRAAV-SRQAAKGVWD 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D   +  ++G+ FYN + ++LS LG+T T + L +YI  FS NA+ + + F+   T  +
Sbjct: 64  DDDPKYCALSGHCFYNVTSFTLSNLGATKTCDALMAYINGFSVNAREVLQRFEMRQTCEK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++ G+LY++C  FSG +L P+TV DR+M++IYEHLI+R+G E+S+ AEDFMTP+DV  L
Sbjct: 124 LDEKGMLYEVCTRFSGFDLGPETVSDRMMTDIYEHLIQRYGEEISQDAEDFMTPKDVARL 183

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHG 244
           ATALL   +D L     G IRTLYD +CGT GF+ DA++ + +     H K P  +VP+G
Sbjct: 184 ATALLFANEDTLLNADNGDIRTLYDGSCGTCGFICDALDQLDEWHDKGHFKSPTKIVPYG 243

Query: 245 QELEPETHAVCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           QELE  T A+  A +++R +        D   DLS  I  G TL  D F G+ F+Y L+N
Sbjct: 244 QELEDATWAMGKAALMLRNIAGGSGDVLDQMTDLSAGIMLGDTLDDDRFEGRTFNYQLTN 303

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+GK+W+K+KDAV +E   G  GRFG G P I DGSMLF+ ++A K+  P  GGG+AAI
Sbjct: 304 PPYGKEWKKEKDAVLEEMGRGFDGRFGAGKPDIDDGSMLFMQNVAAKMAPPKEGGGKAAI 363

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AGSG S IRRWL   DL++ IV LPT++F+RT IATY+W+L+N K E R
Sbjct: 364 VLSGSPLFNGDAGSGPSGIRRWLFSEDLVDCIVKLPTEIFYRTGIATYIWVLNNHKPENR 423

Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +G VQLI+A++  T++R ++G KR  I +DQ   I+  YV   +   S ++    F YR+
Sbjct: 424 KGYVQLIDASEEKTALRKSQGNKRYEIGEDQAAWIVRTYVDGHDHGRSVIVPVENFMYRK 483

Query: 478 IKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           +   RPLR+       GL A         KLS   ++     ++  +++        S V
Sbjct: 484 VTTQRPLRVVIEPSVDGLDALFTLSKPMEKLSDASRA----AIRSWVEKNEGASLTYSEV 539

Query: 537 KESIKSNEAKTLKVKASKSFIV-AFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
             + +       K K  K+ +  A +  FGR+DP A P  D  G  + D  L + ENVP 
Sbjct: 540 LAATEKLHKAIEKPKPQKAALADALVKVFGRRDPSATPAIDAKGNPVFDPELKDTENVPI 599

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEK--DKEIGRVG------------YEINFNRFF 641
              I DY   EV P+ PDA +D+   DE   D + G                 I+FNR+F
Sbjct: 600 GMEINDYMATEVLPYAPDAVVDESVKDEPKYDAKSGLTANPLGDGGVGVVGTTISFNRYF 659

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLL 668
           Y+Y+  R  Q I  E+  +E  +  L+
Sbjct: 660 YKYEKPRDPQVIAKEILELEDGLGELM 686


>gi|73668549|ref|YP_304564.1| type I restriction-modification system methyltransferase subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72395711|gb|AAZ69984.1| type I restriction-modification system methyltransferase subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 680

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 280/684 (40%), Positives = 397/684 (58%), Gaps = 35/684 (5%)

Query: 12  ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
            +FIW  A++ L  DFK  ++  VILPFT+LRRL+C L PT+  V E      G   +  
Sbjct: 8   TSFIWSVADEVLRDDFKRGEYPDVILPFTVLRRLDCVLAPTKDKVLEYDKKLEGKIENKN 67

Query: 71  SFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             ++ A GYSFYNTS Y    L    T+   NL +YI  FS+N + + + F    TI  L
Sbjct: 68  GALRHASGYSFYNTSPYDFEKLLAAPTSIGQNLRAYINGFSENMREVIDKFKLWGTIDTL 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+ GLL+ + + F+ ++LHPD V +  M  I+E LIR+F  + +E   +  TPR+V+ L 
Sbjct: 128 EEKGLLFLLIQKFANVDLHPDAVSNHEMGYIFEELIRKFNEQTNENPGEHFTPREVIRLM 187

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LLL  D     ++  ++RT+YDP CGTGG LT A  H+ D   H      +   GQE+
Sbjct: 188 VNLLLSQDQEKLAQN-HIVRTVYDPACGTGGMLTIAKEHILD---HINPNANIKLFGQEV 243

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             +T A+  + MLI+  + D     + NI+  S+ SKD   G+ F Y LSNPP+GK W+K
Sbjct: 244 NDKTFAISKSDMLIKGDDKD-----ADNIKPDSSFSKDGHAGETFDYILSNPPYGKDWKK 298

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           ++D +EKE K G  GRFG GLP+ SDG ++F+ H+ +K++    GG R AIV++ SPLF 
Sbjct: 299 EEDFIEKEAKKGYEGRFGAGLPRKSDGQLIFVQHMISKMKPTEEGGSRIAIVMNGSPLFT 358

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSGESEIRRW++END +EAIVALP  LF+ T I TY+WI++NRK E+RRGKVQLINA
Sbjct: 359 GDAGSGESEIRRWIIENDWLEAIVALPNQLFYNTGINTYIWIITNRKDEQRRGKVQLINA 418

Query: 428 TDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
            D +  +R   G KR  I+  Q  +I  ++   +  +F ++ D   FGYR+I V RPLR+
Sbjct: 419 ADFYVKMRKSLGDKRNEISPSQIEEITKLHTDFKENEFVKIFDDEAFGYRKITVERPLRL 478

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWL------------------DILKPMMQQIYP 528
           +F      + RL+    ++KL+   +   L                  + L  M   ++ 
Sbjct: 479 NFQASPERITRLKEQSAFQKLAVSKKKKDLQEKAREEAEGRKVREEIINALSGMDANVF- 537

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           Y   E F K+   +   K   +K + +   +   A    D  A+   D  G    D+ L 
Sbjct: 538 YTDREQFEKDL--NAALKKADLKPATAVKKSIFEALSESDENAETCKDKKGNNEADSQLK 595

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  E I  YF REV PHVPDA+ID+   D KD ++G+VGYEINFNR+FY+Y+P R
Sbjct: 596 DTENVPLKEDIYTYFEREVKPHVPDAWIDETTRDPKDGKVGKVGYEINFNRYFYKYEPPR 655

Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672
            L+DI+A++  +E +I  LL EMA
Sbjct: 656 ALEDIEADINKLENEILELLREMA 679


>gi|329937002|ref|ZP_08286631.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces griseoaurantiacus M045]
 gi|329303609|gb|EGG47494.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces griseoaurantiacus M045]
          Length = 663

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 289/685 (42%), Positives = 411/685 (60%), Gaps = 56/685 (8%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC LEPTR AV E    F G +I+ +
Sbjct: 9   LANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLEPTRDAVTETVERFAGQDINAD 68

Query: 71  SFV-KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            F+ K AG++FYNTS  +L  + +   +   NL+ Y+ASFSDNA+ + + F+F+  + RL
Sbjct: 69  KFLRKAAGHAFYNTSSLTLKKIAADPGSAAKNLQVYVASFSDNARGVLDRFEFAQQVKRL 128

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + AGLLYKI   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TPR+V+ L 
Sbjct: 129 DSAGLLYKIIGKFTDLDLRPEVVSNHNMGYIFEELIRRFSEQSNETAGEHFTPREVIQLM 188

Query: 188 TALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             LL+ PD DAL  + PG++RT+ DP CGTGG L+   + + +      +      +GQE
Sbjct: 189 VRLLVAPDGDAL--QLPGVVRTVMDPACGTGGMLSATDDLIKELNPDATVEV----YGQE 242

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE+ A+C + ++I+    +P     +NI  G++ + D    + F Y L+NPPFG +W+
Sbjct: 243 LNPESWAICRSDLMIKG--QNP-----ENIAFGNSFNDDGHARRTFDYLLANPPFGVEWK 295

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE-LPPNGGG--RAAIVLSS 362
           K K+ VE+EH K G  GRFG GLP+I+DGS+LFL H+ +K++ +  NGGG  R AIV + 
Sbjct: 296 KVKEDVEEEHEKLGSAGRFGAGLPRINDGSLLFLQHMISKMKPVDVNGGGGSRIAIVFNG 355

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW+LEND +E IVALP  LF+ T I+TY WIL+NRK+ + +GKV
Sbjct: 356 SPLFTGAAGSGESEIRRWILENDWLEGIVALPDQLFYNTGISTYFWILTNRKSPDHKGKV 415

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY----VSRENGKFS-----RMLDYRT 472
            L++A D W  +R   G KR+ +  D    ++ +Y     + ++ +       ++ D   
Sbjct: 416 VLLDARDQWQKMRKSLGDKRKELGKDHIATVVKLYGEALSAAQDAEHPLHAKVKVFDNTA 475

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           FGY+RI V RPL++ F + +  LA LEA    +KL     S  L+    +       GW+
Sbjct: 476 FGYQRITVERPLKLRFEVTEETLAALEASKAIQKLP--QASVMLEAFASLKGS----GWS 529

Query: 533 ESFVKESIKSNEAKTLKVKASKS------FIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
               K++      K   V+A  +      F  A   A G +DP  + V  V G+   D  
Sbjct: 530 ----KKTDAWLALKDAVVQAGSTWPTGAPFNKALREAIGVRDPEGE-VQLVKGKPEADAE 584

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L +YENVP  E +++Y  REV PHVPDA+I        D    ++GYEI F R FY Y+P
Sbjct: 585 LRDYENVPLGEDVEEYLEREVHPHVPDAWI--------DHSKTKIGYEIPFTRHFYVYKP 636

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R L +IDAELK +EA+I  LL E+
Sbjct: 637 PRPLAEIDAELKLLEAEIQGLLGEV 661


>gi|217977715|ref|YP_002361862.1| N-6 DNA methylase [Methylocella silvestris BL2]
 gi|217503091|gb|ACK50500.1| N-6 DNA methylase [Methylocella silvestris BL2]
          Length = 673

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 290/688 (42%), Positives = 407/688 (59%), Gaps = 44/688 (6%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +F+W  AE L GDFK +D+GKVILPF ++RRL+C LE T+  V E   +     ID
Sbjct: 7   SNLGSFVWSIAEILRGDFKQSDYGKVILPFIVMRRLDCILEATKPYVLEAAKSLP-EGID 65

Query: 69  LES----FVKVAG--YSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFED-F 118
            E+        AG     YNTS ++ ++L   +     +NL  +I  FS N + IF D F
Sbjct: 66  DETRDMILFGAAGDKIRVYNTSRFTFTSLKGQDPGQVHDNLIDFITGFSPNVRDIFLDKF 125

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F+  + RL+  G+L+++ + F  I+LHP+ V +  M  ++E LIRRF    +E A +  
Sbjct: 126 RFTEALKRLKDGGILWQVFERFCAIDLHPNHVSNIEMGYLFEDLIRRFSEISNETAGEHF 185

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   LLL  D A    + G+IRT+YDP CGTGG L  A+   A    + K+  
Sbjct: 186 TPREVIRLIVELLLANDHAALTGT-GIIRTVYDPACGTGGML--ALTEEAMTALNPKVRV 242

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQEL  E+  +C + ML+     +P     + I  G+TL++D   GK FHY LSN
Sbjct: 243 ELF--GQELNGESFGICKSDMLV--TGHNP-----EQIAFGNTLTEDAHLGKTFHYMLSN 293

Query: 299 PPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PP+G  W+K +D +  EH+  G  GRFGPGLP+ISDG +LFL+H+ +K+      G R  
Sbjct: 294 PPYGVDWKKYQDPIRAEHETKGFDGRFGPGLPRISDGQLLFLLHMISKMR-DDEQGSRIG 352

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV++ SPLF G AGSGESEIRRW+LE D +EAIVA+PTDLF+ T I+TY+W+L+NRK   
Sbjct: 353 IVMNGSPLFTGGAGSGESEIRRWMLEKDWVEAIVAMPTDLFYNTGISTYVWLLNNRKPSA 412

Query: 418 RRGKVQLINATD--LWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG-----KFSRMLD 469
           RRGKVQLI+A+    W S+R   G KRR I +  R +I+ IY    NG     +FS+++D
Sbjct: 413 RRGKVQLIDASSERFWKSMRKSLGSKRREIPEAARHEIVRIYAEMLNGDGPYGEFSKIVD 472

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              FGYR I++ RPLR++F      LARL  +   +KL    +   LD L   +      
Sbjct: 473 REDFGYREIRIERPLRLNFQATPKRLARLAEEKAVQKLEIGERQELLDALAHNLP----- 527

Query: 530 GWAESFVK----ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
              +SF      E + +   K +  K       A ++A   +D  AD   D NG+   DT
Sbjct: 528 --TQSFTNRDAFEKVLTRALKGVGGKIGAPLKKAILSALSERDESADICLDANGKPESDT 585

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
            L ++E VP  +  +D+  REV+P VPDA++D+ + D++D E GRV YEINFNR+FY+Y 
Sbjct: 586 QLRDHELVPLNDDWRDFVAREVTPFVPDAWVDENYRDDRDGETGRVAYEINFNRYFYKYV 645

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673
           P R L  ID ELK +EA+IA LL+E+A 
Sbjct: 646 PPRPLAQIDCELKQLEAEIAGLLKEVAA 673


>gi|256375105|ref|YP_003098765.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919408|gb|ACU34919.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 670

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/690 (40%), Positives = 400/690 (57%), Gaps = 59/690 (8%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L PT+  V E    F    +D +
Sbjct: 9   LANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLTPTKDKVLETAERFADREMDPD 68

Query: 71  SFV-KVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            F+ K +G+SFYNTS Y+L  +   +T+    L  Y+ +FS NA+ + E ++F+  + +L
Sbjct: 69  RFLRKASGHSFYNTSTYTLKAIAGDATHAAKYLNEYLGAFSPNAREVLERYEFAQQVKKL 128

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + A LLY++   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TPR+V+ L 
Sbjct: 129 DAADLLYQVLGRFADLDLRPEVVTNHQMGYIFEELIRRFAEQSNETAGEHFTPREVIDLM 188

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL+ PD  +    PG +RT+ DP CGTGG L+ A   +     H+K   + V  GQEL
Sbjct: 189 VKLLIAPDSDVLS-VPGAVRTVLDPACGTGGMLSAAEEEIT---KHNKDATVKV-FGQEL 243

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PE+ A+C + M+I+    DP     +NI+ G++ S D      F Y L+NPPFG  W+K
Sbjct: 244 NPESWAICRSDMMIK--GQDP-----ENIKFGNSFSDDSHAHATFDYVLANPPFGVDWKK 296

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKL---ELPPNGGGRAAIVLSSS 363
            ++ VE+EHK  GE GRFG GLP+I+DGS+LFL H+ +K+   ++   GG R AIV + S
Sbjct: 297 VQETVEREHKMLGESGRFGAGLPRINDGSLLFLQHMISKMKPVDVDGKGGSRVAIVFNGS 356

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G A SGES+IRRW+LEND +E IVALP  LF+ T I TY WI+SNRK++ R+GKV 
Sbjct: 357 PLFTGAADSGESKIRRWILENDWLEGIVALPDQLFYNTGIFTYFWIVSNRKSKGRQGKVV 416

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVS----------------RENGKFSR 466
           L++A D W  +R   G KR++IN+ Q  +I  +Y                  R  G+  +
Sbjct: 417 LLDARDYWQKMRKSLGDKRKMINEQQISEITRLYTEALAILDAEKNDQMHDLRNKGRKIK 476

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +     FGYRRI V RPL++ F + +  L  L      R   P+ ++   ++    ++ +
Sbjct: 477 LFRNEDFGYRRITVERPLKLRFKVTEETLFAL------RAAKPVQKTTDAEMFTAALRPL 530

Query: 527 YPYGWAESF-----VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
               W +       +K++I    A  L       F     +A G +DP  + V  + GE 
Sbjct: 531 IGKSWLKKTEAWLDMKDAIV---AAGLLWPTGVPFAKVLRDAVGVRDPEGE-VQKIKGEP 586

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            PD+ L +YENVP  E + +Y  REV PH PDA+ID+           ++GYEI F R F
Sbjct: 587 EPDSELRDYENVPLDEDVDEYLRREVLPHAPDAWIDRTKT--------KIGYEIPFTRHF 638

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y+YQP R L +IDAELK +EA+I  LL ++
Sbjct: 639 YEYQPPRPLPEIDAELKSLEAEIKLLLHKV 668


>gi|134097472|ref|YP_001103133.1| type I restriction-modification system methyltransferase subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910095|emb|CAM00208.1| type I restriction-modification system methyltransferase subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 652

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 278/677 (41%), Positives = 406/677 (59%), Gaps = 43/677 (6%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +AN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L+PTR  V E    +   ++D +
Sbjct: 1   MANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLKPTRGKVLETVEKYRNRDLDPD 60

Query: 71  SFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +F+ K +G+ FYNT+  +L ++   S++   NL  YI  FS NA  + E +DF+  I +L
Sbjct: 61  TFLRKASGHRFYNTTPLTLKSIVADSSHVARNLTQYIGGFSPNAYEVLERYDFAQQIKKL 120

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + A LLYK+   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TPR+V+ L 
Sbjct: 121 DGANLLYKVTSTFADLDLRPEVVDNHQMGYIFEELIRRFAEQSNETAGEHFTPREVIELM 180

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL+ PDD    + PG+IR + DP CGTGG L+ A  H+    +   +      +GQEL
Sbjct: 181 VNLLIAPDDEALSK-PGVIRRVLDPACGTGGMLSAAYEHITTMNADATVEV----YGQEL 235

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PE+ A+C + ++I+  + DP      NI+ G++ S D    + FHY L+NPPFG +W+K
Sbjct: 236 NPESWAICRSDLMIK--DQDP-----DNIKFGNSFSDDGHYRRTFHYLLANPPFGVEWKK 288

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            K+ VE + +  GE  RF P LP+I+DGS+LFL H+ +K+    +GGGR AIV + SPLF
Sbjct: 289 VKEDVEGDLEQLGENSRFWPALPRINDGSLLFLQHMLSKMNSVEDGGGRVAIVFNGSPLF 348

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G AGSGES+IR+ +LEND +EA+VALP  LF+ T I+TY WIL+NRK+ + +GKV L++
Sbjct: 349 TGAAGSGESQIRQHILENDWLEAVVALPDQLFYNTGISTYFWILTNRKSPDYKGKVVLLD 408

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRE-----NGKFSRMLDYRTFGY 475
           A + W  +R   G KR+ +  DQ  +I  +Y     V+++     +GK  ++ +   FGY
Sbjct: 409 AREYWQKMRKSLGDKRKYVASDQIAEITRLYAEALQVAKDENHPLHGKV-KVFENDDFGY 467

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           RRI V RPL++ F   +  LA L      +KL    Q  ++  L+P++ Q +   W ++ 
Sbjct: 468 RRITVERPLKLRFEFTEEILASLGEAKQIQKLDDPEQ--FVAALRPLLGQTW---WKKTE 522

Query: 536 VKESIKSN-EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594
              ++K    A  L      +F  A  +A G +DP  + V    GE  PD  L +YENVP
Sbjct: 523 AWLALKDAIVAAGLTWPTGAAFNKALRDAIGVRDPEGE-VQIAKGETEPDPELRDYENVP 581

Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
             + ++DY  REV PHVPDA+ID            ++GYEI F R FY Y+P R L +ID
Sbjct: 582 LDQDVEDYLEREVLPHVPDAWIDHTKT--------KIGYEIPFTRHFYVYEPPRPLAEID 633

Query: 655 AELKGVEAQIATLLEEM 671
           AELK +EA+I  LL E+
Sbjct: 634 AELKALEAEIQELLGEV 650


>gi|148360830|ref|YP_001252037.1| putative type I restriction enzyme M protein [Legionella
           pneumophila str. Corby]
 gi|148282603|gb|ABQ56691.1| Putative type I restriction enzyme HindVIIP M protein [Legionella
           pneumophila str. Corby]
          Length = 676

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 284/684 (41%), Positives = 402/684 (58%), Gaps = 38/684 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           +L+ F W  AE L GDFK +++GKVILPF +LRRL+C LEP++ AV   Y          
Sbjct: 11  NLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILEPSKDAVISAYENLPEGIDDH 70

Query: 66  NIDLESFVKVAG-YSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIF-EDFDF 120
             D+  F  V G    YN +  + S + + +      NL  YI SF+ + + IF E F F
Sbjct: 71  TKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDVHKNLLDYITSFNSSVRDIFLEKFLF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + RL+  G+L+++   F  I+LHPD V +  M  ++E LIRRF    +E A +  TP
Sbjct: 131 TDQLKRLKDGGILWQVFDRFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNETAGEHFTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LLL  +DA      G+IRT+YDP CGTGG L      + +  S  ++    
Sbjct: 191 REVIRLIVDLLL-INDAEALAGSGIIRTVYDPACGTGGMLALMEEAMKEYNSKIRVEL-- 247

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL PE+  +C + ML+     +P +     I  G+TL++D    K+FHY LSNPP
Sbjct: 248 --YGQELNPESFGICTSDMLVTG--HNPEQ-----IAFGNTLTEDAHKDKKFHYMLSNPP 298

Query: 301 FGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           +G  W+K +D +++E  + G  GRFG GLP+ISDG +LFL H+ +K+      G R  IV
Sbjct: 299 YGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMR-DDEVGSRIGIV 357

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           ++ SPLF G AGSGESEIRRW+ END +EAI+ALPTDLF+ T I TY+W+L+N+K + RR
Sbjct: 358 MNGSPLFTGGAGSGESEIRRWMFENDWVEAIIALPTDLFYNTGIQTYVWMLTNKKDKNRR 417

Query: 420 GKVQLINATD--LWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG-----KFSRMLDYR 471
           GKVQLI+A+    W S+R   G KRR I+D  R +I+ IY    NG     +FS++ D +
Sbjct: 418 GKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSEFSKIFDRQ 477

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPY 529
            FGYR I++ RPLR++F   K  L  L+ + T+ KLS + Q   L  L    + QQ    
Sbjct: 478 EFGYREIRIERPLRLNFEGSKERLELLQQENTFLKLSEIEQQELLTALNHNTLKQQFKNR 537

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
              E  +K ++K+     L  K +     A +     KD  AD   D  G   PDT+L +
Sbjct: 538 DAFEKALKTALKN-----LSFKLTAPLKKAILTTLSEKDETADICCDAKGNPEPDTDLRD 592

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
           +E VP  E  ++Y  REV P V DA++D+   D  D ++GRVGYEINFNR+FY+Y P R 
Sbjct: 593 HELVPLKEDWREYVEREVKPFVADAWVDENHKDATDGKVGRVGYEINFNRYFYKYVPPRP 652

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           + +I+ ELK +EA+IA LL+E+  
Sbjct: 653 VAEINEELKQLEAEIANLLKEVVA 676


>gi|298674424|ref|YP_003726174.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287412|gb|ADI73378.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 679

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/686 (39%), Positives = 412/686 (60%), Gaps = 40/686 (5%)

Query: 12  ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID-L 69
           ANFIW  A++ L  DFK   +  VILPFT+LRR+EC LEPT+  V + Y        D  
Sbjct: 8   ANFIWSVADEVLRDDFKRGKYRDVILPFTVLRRVECVLEPTKDNVIQTYENVKDKVKDPH 67

Query: 70  ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            +    AG+SFYNTS Y L  L    +N   N +SYI SFS+N + IF+ F   + I +L
Sbjct: 68  NALCHAAGHSFYNTSPYDLKKLLDDPSNIGQNFKSYINSFSENMRDIFDKFYLWNYIDQL 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +  LLY + + FS ++LHPD+V +  M  I+E LIRRF  +V+E   +  TPR+V+ L 
Sbjct: 128 IEDNLLYMLLEKFSNVDLHPDSVSNHEMGYIFEELIRRFNEDVNENPGEHFTPREVIRLM 187

Query: 188 TALLLDPDDA-LFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQ 245
             L+   D+A L   +P  IRT+YDP CGTGG LT A +H+  +  S+  I       GQ
Sbjct: 188 VNLIFYQDEAKLGHNTP--IRTIYDPACGTGGMLTIANDHILKEINSNADIWLF----GQ 241

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ PET A+  + M+++  + D     ++NI+ GS  S D    + F+Y LSNPPFGK W
Sbjct: 242 EVNPETFAIAKSDMMLKGNDRD-----AENIKMGSVFSNDGHPNETFNYMLSNPPFGKDW 296

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +K+++ + +E K+    RF  GLP+  DG +LFL H+ +K++ P +GG R A+V + SPL
Sbjct: 297 KKEQNFILEEAKSAS-SRFTAGLPRKDDGQLLFLQHMISKMKRPEDGGSRIAVVTNGSPL 355

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRRW++END +EAIVALP  LF+ T I TY+WI++NRK + R+GK+QL+
Sbjct: 356 FTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGINTYVWIVTNRKEDHRKGKIQLV 415

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A + +  +R   G+KR  I+ +Q   I +++ +   G++S++ D   FGYR+I + +PL
Sbjct: 416 DARECYQKMRKSLGEKRHEISSEQIDTITNLHNNFNEGQYSQIFDNHEFGYRKITIEQPL 475

Query: 485 RMSFILDKTGLARLEADITWRKLSPLH------------------QSFWLDILKPMMQQI 526
           R+SF +    + +L+    ++ L+                     Q   +++L  M  + 
Sbjct: 476 RLSFQVTPERIEQLKEQKAFKNLAVSKKRKNTEEKEKEEAEGQKLQDSIIEMLSEMDSEK 535

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
           + Y   + F K  + ++  K   +  + +   A +++   +D  AD   D    W PD+ 
Sbjct: 536 F-YKNRDEFWK--VLNDNLKKHGININNTVEKAILDSMSERDETADICVDSKKRWEPDSQ 592

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L +YENVP  E I DYF REV PHVP+A+ID+   D+ D ++G+VGY INFNR+FY+Y+P
Sbjct: 593 LRDYENVPLDEDIYDYFEREVKPHVPEAWIDESKTDQYDNDVGKVGYIINFNRYFYEYEP 652

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMA 672
            R L++I++++  +E +I  LL+E++
Sbjct: 653 PRPLEEIESDINDLENEILELLQEVS 678


>gi|254491699|ref|ZP_05104878.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010]
 gi|224463177|gb|EEF79447.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010]
          Length = 653

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/684 (42%), Positives = 415/684 (60%), Gaps = 46/684 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F+ S +    FIW  A+ L G+FK +++G+VILPFT+LRRL+C LE ++  V  K  
Sbjct: 1   MENFSTSVS----FIWSIADILRGNFKQSEYGRVILPFTVLRRLDCVLEASKGDVLNKLK 56

Query: 61  AFGGSNID---LESFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAI 114
           +    N+D    E+ + +A G +F+NTS Y+   L     N   NL  +I  FSD+A+ I
Sbjct: 57  SLS-DNVDHTMRETMLNMAAGQNFHNTSPYTFQKLLDDPDNIAANLSHFINGFSDDAREI 115

Query: 115 FED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           F D F     I RL+K  LLY +   F+  +LHPD V +  M  ++E LIRRF  + +E 
Sbjct: 116 FIDRFKLPEQITRLDKDNLLYLVVSKFAQADLHPDAVSNLQMGYMFEELIRRFSEQSNET 175

Query: 174 AEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG- 231
           A +  TPR+V+ L   LL   D D L K  PG+IR L+DP CGTGG L+ A +++ +   
Sbjct: 176 AGEHFTPREVIRLMVDLLFYEDADVLTK--PGIIRKLFDPACGTGGMLSIAEDYLRELNP 233

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +H ++      +GQEL  E++ +C + M+I+   +       KNI  G++ S+D    +
Sbjct: 234 DAHLEV------YGQELNDESYGICKSDMIIKGQNA-------KNIHPGNSFSEDGLEDE 280

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +F Y LSNPPFG +W+K + A+++E    G  GRFG GLP++SDGS+LF+ H+ +K    
Sbjct: 281 QFDYMLSNPPFGVEWKKVEKAIKEEANTLGLKGRFGAGLPRVSDGSLLFVQHMISKFNR- 339

Query: 350 PNGG-GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            NG   R A+VL+ SPLF G AGSGESEIRRW++END +EAIVALPTD+F+ T IATY+W
Sbjct: 340 -NGDPSRLAVVLNGSPLFTGSAGSGESEIRRWIIENDWLEAIVALPTDMFYNTGIATYIW 398

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           I++N+K  +R+GKVQLINATD  + +R   G KR+ I  +Q + I +++ + E  + S++
Sbjct: 399 IITNKKKPQRKGKVQLINATDFHSPMRKSLGSKRKQIAPEQIKTIAELFGNFEESEQSKI 458

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D   FGY+RI V RPL+++F +D+  L  L  +  + KL    Q   +  L+ +  +  
Sbjct: 459 FDNSDFGYQRITVERPLKLNFNVDEERLELLRDNKAFSKLDKTDQQTIITALETLPGRGL 518

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587
            Y   ++FVK+  K+   K+ +VKA        ++A   +D  AD  T+  G+  PD+ L
Sbjct: 519 -YLNRDTFVKDMDKA--LKSAQVKAGAPLKKVILSALSERDENADVCTNNKGKPEPDSEL 575

Query: 588 TEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
            +YENVP  E I  YF REV PHVPDA+ID       DK   +VG+EI FNR FYQY P 
Sbjct: 576 RDYENVPLKEDIDTYFQREVIPHVPDAWID------YDK--TKVGFEIPFNRHFYQYVPP 627

Query: 648 RKLQDIDAELKGVEAQIATLLEEM 671
           R L++IDAEL  V A+I  LL E+
Sbjct: 628 RPLEEIDAELDAVTAEILELLREV 651


>gi|296106106|ref|YP_003617806.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648007|gb|ADG23854.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 676

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/683 (41%), Positives = 403/683 (59%), Gaps = 40/683 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           +L+ F W  AE L GDFK +++GKVILPF +LRRL+C LE ++ AV + Y          
Sbjct: 11  NLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILETSKDAVVKAYENLPEGIDDH 70

Query: 66  NIDLESFVKVAG-YSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIF-EDFDF 120
             D+  F  V G    YN +  + S + + +      NL  YI SF+ + + IF E F F
Sbjct: 71  TKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDIHKNLLDYITSFNSSVRDIFLEKFLF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + RL+  G+L+++   F  I+LHPD V +  M  ++E LIRRF    +E A +  TP
Sbjct: 131 TDQLKRLKDGGILWQVFDLFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNETAGEHFTP 190

Query: 181 RDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           R+V+ L   LLL  D DAL     G+IRT+YDP CGTGG L      + +  S  ++   
Sbjct: 191 REVIRLIVDLLLINDADAL--AGSGIIRTVYDPACGTGGMLALMEEAMKEYNSKIRVEL- 247

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL PE+  +C + ML+     +P +     I  G+TL++D    K+FHY LSNP
Sbjct: 248 ---YGQELNPESFGICTSDMLVTG--HNPEQ-----IAFGNTLTEDAHKDKKFHYMLSNP 297

Query: 300 PFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+G  W+K +D +++E  + G  GRFG GLP+ISDG +LFL H+ +K+      G R  I
Sbjct: 298 PYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMR-DDEVGSRIGI 356

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V++ SPLF G AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+L+N+K + R
Sbjct: 357 VMNGSPLFTGGAGSGESEIRRWMLENDWVEAIIALPTDLFYNTGIQTYVWMLTNKKDKNR 416

Query: 419 RGKVQLINATD--LWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG-----KFSRMLDY 470
           RGKVQLI+A+    W S+R   G KRR I+D  R +I+ IY    NG     +FS++ D 
Sbjct: 417 RGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSEFSKIFDR 476

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYP 528
           + FGYR I++ RPLR++F   K  L  L+ + T+ KLS + Q   L  L    + QQ   
Sbjct: 477 QEFGYREIRIERPLRLNFEGSKERLELLQQEKTFLKLSEIEQQELLTALNHNTLKQQFKN 536

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
               E  +K ++ +     L  K +     A +     KD  AD   D  G   PDT+L 
Sbjct: 537 RDAFEKTLKTTLNN-----LSFKLTAPLKKAILTTLSEKDETADVCCDAKGNPEPDTDLR 591

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           ++E VP  E  ++Y  REV P V +A++D+   D  D ++GRVGYEINFNR+FY+Y P R
Sbjct: 592 DHELVPLKEDWREYVEREVKPFVANAWVDENHKDATDGKVGRVGYEINFNRYFYRYVPPR 651

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
            + +ID ELK +E++IA LL+E+
Sbjct: 652 PVAEIDEELKQLESEIANLLKEV 674


>gi|300724722|ref|YP_003714047.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Xenorhabdus nematophila ATCC 19061]
 gi|297631264|emb|CBJ91959.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Xenorhabdus nematophila ATCC 19061]
          Length = 760

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 303/762 (39%), Positives = 414/762 (54%), Gaps = 115/762 (15%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE  + AV  +Y       +  E+
Sbjct: 10  AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEQNKDAVVAEYERIKPMKLLEEA 69

Query: 72  -----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                F    G +F+NTS  +L  +G    ++NLE+Y+ SFS +A+ IFE F+F   +  
Sbjct: 70  QEKFLFRAANGLAFFNTSPMNLGKMGQNGIKDNLENYVQSFSKDAREIFEYFNFYEFVGL 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++A LLYK+ K F+   L PD V +  M  I+E LIRRF    +E A +  TPRD+V L
Sbjct: 130 LDEANLLYKVVKKFATTPLSPDVVSNHEMGLIFEELIRRFAESSNETAGEHFTPRDIVDL 189

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T+L+   D+  +  +PG IRT+YDPT GTGGFL+  M +V       +    +V  GQE
Sbjct: 190 TTSLVFTGDEDSY--TPGSIRTIYDPTAGTGGFLSAGMEYVLKGSPLAR----MVAFGQE 243

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C   MLI+       +D+S+ I+ G+TLS D     +F Y LSNPPFG  W+
Sbjct: 244 LNPESYAICKGDMLIKG------QDVSR-IKLGNTLSNDQLPADKFDYMLSNPPFGVDWK 296

Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKL------ELPPNGGGRAAIV 359
           K ++ ++ EH   G  GRFG GLP++SDGS+LFLMHL +K+      +     G R  I+
Sbjct: 297 KIEEDIKSEHAVKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRDLRFVDGRAIEGSRIGII 356

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+WILSN+K  ER+
Sbjct: 357 LNGSPLFTGSAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWILSNKKVPERK 416

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRR--------------QILDIYVSRENGKF 464
           GKVQLINAT+L + +R   G KR  + D+  R              QI D     +    
Sbjct: 417 GKVQLINATNLSSKMRKSLGSKRHYLTDEAIRAITLNYGQFEEADTQIQDGATDSQKPFV 476

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE----------ADI------TWRKLS 508
           S++ +  TFGYRR+ + RPLR+S  +    +  L           ADI       W + +
Sbjct: 477 SKIFETHTFGYRRLTIERPLRLSVQITDQAVESLRFAPKPFNAVMADIYDAFGSEWTEET 536

Query: 509 PLHQSFWLDILKPMMQQIYP-------------YGW------------------AESFVK 537
               +   D ++ M+++ +P               W                  +E F  
Sbjct: 537 YGSLNKVEDKIRAMIKKNFPELKEKQIKDLLDSKTWLFQKTLLEKAQKLQSIIGSEQFND 596

Query: 538 ----ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV------------------T 575
               E I  +  KT  +K        FI+A   K+P A+PV                   
Sbjct: 597 FNQFEQILKDALKTAGIKLETKEKKQFIDAITWKNPDAEPVIAKVLKEKAQPLYGAFNYQ 656

Query: 576 DVNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
           D   E+  D +L + ENVP        + I+DYF REV PHV DA+I+    D KD EIG
Sbjct: 657 DKVVEFQQDGDLRDNENVPLDPTTTTTQLIEDYFKREVQPHVADAWINADKRDGKDGEIG 716

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            +GYEI FNR FY YQP R L  IDA+L  V A+I  LL+E+
Sbjct: 717 MIGYEIPFNRHFYVYQPPRDLAAIDADLDKVSAEIMQLLQEV 758


>gi|149927744|ref|ZP_01915996.1| type I restriction-modification system methyltransferase subunit
           [Limnobacter sp. MED105]
 gi|149823570|gb|EDM82800.1| type I restriction-modification system methyltransferase subunit
           [Limnobacter sp. MED105]
          Length = 682

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/686 (40%), Positives = 395/686 (57%), Gaps = 38/686 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + LA+ IWKNAE L G ++  ++ KVILPFT+LRRL+C L P R  V  +Y A   S  D
Sbjct: 2   SKLADLIWKNAELLRGAYRENEYRKVILPFTILRRLDCVLAPKREEVYTQYEALRNSKYD 61

Query: 69  LESFVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +E  +  ++ Y F+NTS +SL  L  T  + R+NLE+ +  FS N + IFE F F STI 
Sbjct: 62  MEKILTTISDYPFFNTSRFSLEALAQTPDDVRDNLEAMVNGFSQNVRDIFEKFGFISTIN 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +LE+ G LY + + F+  +L+PD V +  M   +E L+R+F ++VS   E + TPRDV+ 
Sbjct: 122 KLEEKGRLYLVVQRFAETDLNPDVVSNHDMGMAFEELLRKF-NDVSPAGEQY-TPRDVIE 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L  +LL   D  L    PG+++T+YDPT GTGG L+    +V           +L   GQ
Sbjct: 180 LMVSLLFSTDQDLLS-IPGIVKTMYDPTAGTGGLLSVGEEYVKRMNDR----AVLSLFGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           ELE ET+A+C A MLIR    +P      NI    TL  DL  G+ F Y  +NPP+G +W
Sbjct: 235 ELEDETYAICKADMLIR--GQNP-----ANIVNEDTLKIDLLAGEVFDYQAANPPYGVEW 287

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSS 363
           +  +DAV +EHK G  GRF PGLP I DG MLF +HL +K+   +   GGGR  +V + S
Sbjct: 288 KPAEDAVRREHKLGAAGRFAPGLPAIRDGQMLFSLHLLSKMRPFIDGKGGGRIGVVHNGS 347

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIRR+++ ND +EAIVA+PTDLF+ TNI TYLW ++NRK E+R+GKV 
Sbjct: 348 PLFAGDAGSGESEIRRYIMANDYLEAIVAMPTDLFYNTNIQTYLWFMTNRKPEKRQGKVM 407

Query: 424 LINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKF----------SRMLDYRT 472
           L++A+ +   + +N GKKRR   +D   QI   Y   ++  +          +++ D   
Sbjct: 408 LLDASKMGVLMKKNLGKKRREFTEDCIAQINKAYEDFKDMTWKDPAGERVLNAKVFDNAH 467

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           F YR++ + RPLRM F L       +  + ++ KL PL Q   +  L  +      +  A
Sbjct: 468 FHYRKVTIERPLRMRFQLTDFARDAVLGNPSFAKL-PLEQRHLVGCLLDVFDSTAVFTNA 526

Query: 533 ESF--VKESIKSNEAKTLKVKASKSFIVA-----FINAFGRKDPRADPVTDVNGEWIPDT 585
           + F     +     A T ++    S + A          G KDP+AD  TD  G  I D+
Sbjct: 527 DDFRSALNAAADQVATTQQLTGKASRLTAKSIELLRKTIGVKDPKADITTDEKGSVISDS 586

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
           +L + E VP  + +  YF  EV PH PDA+I+K  +D +D  +G VG EINFNR FY Y+
Sbjct: 587 DLRDAEYVPMNKDVDAYFESEVKPHWPDAWINKEVVDSQDGVVGVVGTEINFNREFYVYK 646

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671
           P R  ++I A+++  E +   +L+ +
Sbjct: 647 PPRSREEIAADIEAKEKKFMEMLKAI 672


>gi|332974852|gb|EGK11767.1| N-6 DNA methylase [Psychrobacter sp. 1501(2011)]
          Length = 801

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 307/806 (38%), Positives = 433/806 (53%), Gaps = 150/806 (18%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + ++ +LA FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+   
Sbjct: 8   TRQSQTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQK 67

Query: 62  FGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                ++ E+       K  G +FYNTS  +L+ +G ++   NL  YI SFS +A+ IF 
Sbjct: 68  VSAMGLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFA 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F   + +L  A LLYK+ + F  I+L P+ V +  M  ++E LIRRF    +E A +
Sbjct: 128 HFKFEEFVGQLNDANLLYKVVQKFMNIDLSPEAVSNYEMGLVFEELIRRFAESSNETAGE 187

Query: 177 FMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             TPRD+V L T+L+ ++ DDAL K+  G+IRT+YDPT GTGGFL+  M +V +   +  
Sbjct: 188 HFTPRDIVRLTTSLVFMEDDDALIKD--GIIRTIYDPTAGTGGFLSSGMEYVLELNPN-- 243

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              ++   GQEL PE++A+C A MLI+  E          I+ G+TLS D     +F Y 
Sbjct: 244 --AVMRAFGQELNPESYAICKADMLIKGQEV-------SRIKLGNTLSDDQLPADKFDYM 294

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANK--------- 345
           LSNPPFG  W+K    ++ EH + G  GRFGPG P++SDGS+LFL+HL +K         
Sbjct: 295 LSNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPGQSHSN 354

Query: 346 --LELPPNG----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
             LE P N     G R  I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+
Sbjct: 355 ASLEAPSNDTAITGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFY 414

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQI------ 452
            T IATY+W+L+N K  ER+GKVQLI+ T+L++ +R   G KR  ++++  + I      
Sbjct: 415 NTGIATYVWVLTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGD 474

Query: 453 LDIYVSRENGK-----------------------FSRMLDYRTFGYRRIKVLRPLRMSFI 489
            ++  +RE  K                        S++ D   FGYRR+ + RPLR+S  
Sbjct: 475 FEVVDARELDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQ 534

Query: 490 LDKTGLARLE-ADITWRKLSP-LHQSF---WL------------DI---LKPMMQQIYPY 529
           +    +  L  A+ T+  + P L++ F   W             DI    + M++  +  
Sbjct: 535 MSDEAIESLRYAERTYDLVMPALYEKFGEQWTEDTYGEFGDLSSDIQVEARAMIKADFSE 594

Query: 530 GWAESFVKESIKS----------NEAKTLKVKAS-------KSFIVAF------------ 560
              E  +KE + S          N AKTL+ +           F V F            
Sbjct: 595 -LKEKQIKEVLDSKLWREQLAVMNAAKTLQQEIGTEQFDDYNQFDVVFKQAIKDTGLDLS 653

Query: 561 -------INAFGRKDPRADPV-----------------TDVNG-----EWIPDTNLTEYE 591
                  +NA   K+P A+ V                 TD  G     E+  D++L +YE
Sbjct: 654 AKDRKQILNAVTWKNPEAERVVKKSVKEANPLYGAFEITDSKGKAKIVEFETDSDLRDYE 713

Query: 592 NVPY------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
           N+P        E I+ YF REV PHV DA+ID    D  D+EIG VGYEI FNR FY Y+
Sbjct: 714 NIPLNPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGIVGYEIPFNRHFYVYE 773

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671
           P R L +IDA+L  V A+I  LL E+
Sbjct: 774 PPRPLSEIDADLDKVSAEIMQLLSEV 799


>gi|260552462|ref|ZP_05825838.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
 gi|260405269|gb|EEW98765.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
          Length = 759

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 297/769 (38%), Positives = 419/769 (54%), Gaps = 124/769 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + +A FIW  A+ L GDFK   +G+VILPFTLLRRLEC  E ++++V E         + 
Sbjct: 7   SQVAAFIWSVADLLRGDFKQFQYGRVILPFTLLRRLECVFESSKASVLEANEKVKAMPLP 66

Query: 69  LESFVKVA-----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            E+  K+      G SF+NTSE  LS+LG  N R NL +YI  FS +A+ IFE F F   
Sbjct: 67  EEAKEKILLKATDGLSFFNTSELDLSSLGQKNIRANLGNYIQHFSKDAREIFEHFKFDEF 126

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L+ A LLYK+ + F+  +L P+ + +  M  ++E LIRRF    +E A +  TPRD+
Sbjct: 127 TGLLDDANLLYKVIQKFASTDLSPENISNHDMGLVFEELIRRFAESSNETAGEHFTPRDI 186

Query: 184 VHLATALLLDPDD-ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V L T L+   DD AL KE  G+IRT+YDPT GTGGFL+    +V +    H    ++  
Sbjct: 187 VRLTTGLIFSQDDDALNKE--GVIRTIYDPTAGTGGFLSSGTEYVYE----HNPEAVMRV 240

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL PE++A+C A MLI+  +        +NI+ G+TLS D    ++F Y LSNPPFG
Sbjct: 241 FGQELNPESYAICKADMLIKGQDV-------RNIKLGNTLSNDQLAYEKFDYMLSNPPFG 293

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKL-ELPPNG-GGRAAIV 359
             W+K +D ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+ ++   G G R  I+
Sbjct: 294 VDWKKIEDEIKDEHQQKGFNGRFGAGLPRVSDGSLLFLMHLISKMRDVDSTGQGSRIGII 353

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+F+ T IATY+W+LSN+K  ER+
Sbjct: 354 LNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPTDMFYNTGIATYVWVLSNKKDAERK 413

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY-------------VSRENGKF- 464
           GKV LINA++L + +R   G KR  + + + R I   Y              S +   F 
Sbjct: 414 GKVHLINASNLSSKMRKSLGSKRNYLTESEIRTITQNYGAFEAVDTLTLDGESEQQKPFS 473

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-------------------------- 498
           S++ +   FGYRR+ + RPLR+S  L    +A L                          
Sbjct: 474 SKIFNSYEFGYRRVTIERPLRLSAQLSDDRIATLRFAPKPFNAVMQKVYESYGKDWTETS 533

Query: 499 ------EADITWRKL--------------SPLHQSFWLDILKPMMQ-----------QIY 527
                 +A +  R L              + L    WL+    M +           Q  
Sbjct: 534 YGQLSDDAQVEIRALIKAEFSELKEKDIKTVLEPKLWLEQRALMRKAQSLQTKIGTAQFD 593

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD--VNG------ 579
            +   +  +K+++K +  K L+ K  K     F++A   K+P A+P  +  + G      
Sbjct: 594 DFNIFDELLKQALKDSSIK-LEGKEKKQ----FLDAVTWKNPEAEPCINKVIKGKENPLY 648

Query: 580 ----------EWIPDTNLTEYENVPY-------LESIQDYFVREVSPHVPDAYIDKIFID 622
                     E++ D +L + EN+         ++ I+ YF REV  HVPDA+I+    D
Sbjct: 649 GQFSYKAKVVEFVQDGDLRDAENIALDHPSQSTIDLIESYFKREVQLHVPDAWINADKRD 708

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            +D EIG VGYEI FNR FY YQP R L +IDA+L  V  +I  LL+E+
Sbjct: 709 AQDGEIGIVGYEIPFNRHFYVYQPPRDLAEIDADLDAVSREIMALLQEV 757


>gi|189499715|ref|YP_001959185.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189495156|gb|ACE03704.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 686

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/684 (39%), Positives = 389/684 (56%), Gaps = 36/684 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           ++ +F+W  A+ L G FK ++F K+ILPFT+LRRL+ ALE T++ V E         ++ 
Sbjct: 9   NVVSFLWAIADLLNGAFKKSEFQKIILPFTVLRRLDYALEKTKAKVLETEHTLKAKGLEN 68

Query: 70  E--SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 + AGY+FYNTS+++  +L    TN   NL  Y+  FS N + IF  F+F  TI 
Sbjct: 69  RHGQLCRAAGYAFYNTSKFNYESLLHDDTNLALNLRQYVMGFSPNVREIFAAFNFDDTIR 128

Query: 126 RLEKAGLLYKICKNF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            L +  LLY + + F   S ++L P ++ +  M  ++EHL+R+F   ++E   +  TPRD
Sbjct: 129 DLGRVNLLYLLMERFNEKSKVDLRPASMSNHEMGYVFEHLLRKFNEALNENPGEHFTPRD 188

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
            + L   L+L  D  L   + G+ RT+YD  CGTGG L+    HV       K+      
Sbjct: 189 AIRLMVDLVLMLDSEL-AGTEGIPRTVYDCGCGTGGILSITKEHVLQINPQAKV----FL 243

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL P T A+  A MLI     +P    ++NI+ GSTLS D  +  RF     NPP+G
Sbjct: 244 YGQELNPFTWAIARADMLIL----EPEGKDAENIKCGSTLSDDQLSDMRFDLQFVNPPYG 299

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            +W KD DAV  E   G  GRFG G P+ SDG MLFL HL  ++  P        I+L+ 
Sbjct: 300 YEWSKDYDAVTAEAARGFDGRFGAGTPRKSDGQMLFLQHLIARMNDPEESQSYIGIILNG 359

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G A SGESEIRRW++END +EAIVA+P  LF+ T I TY+W+LSNRK  + +GKV
Sbjct: 360 SPLFTGGAASGESEIRRWIMENDWLEAIVAMPQQLFYNTGIGTYIWLLSNRKPAKHKGKV 419

Query: 423 QLINAT--DLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
            L++A+  + W+ + ++ G KRR I +D ++ IL++   R+ G   ++ D   FGYR IK
Sbjct: 420 MLVDASGEEFWSGMSKSLGSKRREITEDHKQAILNLVKVRKEGPHVKLFDTTDFGYREIK 479

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-------------LKPMMQQI 526
           VLRPL++ F ++   LARL+A   +R L+   +    +              ++  +Q +
Sbjct: 480 VLRPLKLRFTVNAESLARLDAQAAFRNLAVSKKKAAAEQKREEQEGLALQAEIRNTLQTL 539

Query: 527 Y--PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
               Y   + F      + +   LK+KA    + A +   G +D  A+   D +G   PD
Sbjct: 540 AGKTYTCRDKFTTALDAALKKAGLKLKA--PVLKAILAGIGERDDAAEVCRDKDGNPEPD 597

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + ENVP  E ++ YF REV+PHVPDA+ID  + D KD ++GRVGYEI FNR FY +
Sbjct: 598 TDLNDTENVPLKEKVETYFAREVTPHVPDAWIDPAYCDAKDGQVGRVGYEIPFNRHFYVF 657

Query: 645 QPSRKLQDIDAELKGVEAQIATLL 668
           QP R L  IDA+LK    +I  ++
Sbjct: 658 QPPRLLSAIDADLKTSTDRILNMI 681


>gi|188585425|ref|YP_001916970.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350112|gb|ACB84382.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 673

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/683 (39%), Positives = 401/683 (58%), Gaps = 48/683 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIW  A+ L GD+K +D+GKVILPFT+L+RL+CAL+PT++ V E+Y     S I    
Sbjct: 10  VNFIWSIADLLRGDYKRSDYGKVILPFTVLKRLDCALKPTKNKVLEEYKMLKDSGIQNPE 69

Query: 72  FV--KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            V   + G  F+NTS++    + +   N  +NL  YI  FS NA+ I E F+F   + RL
Sbjct: 70  PVLNDITGQHFHNTSQFDFEKMKNEPDNIGDNLRHYINGFSTNARDIIEYFNFHDHLERL 129

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E++ LLY I   FS I+L P+ V +  M  I+E LIR+F  + +E A +  TPR+V+ L 
Sbjct: 130 EQSNLLYLIVSRFSEIDLSPEKVSNLEMGYIFEELIRKFSEQSNETAGEHFTPREVIRLM 189

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL + D  L ++  G++RT+YDP CGTGG L+ A +++ +  +  K    L   GQEL
Sbjct: 190 VNLLFNEDSDLLQKE-GLLRTIYDPACGTGGMLSVARDYLRELNNDAK----LEMFGQEL 244

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PE++A+C A M+I+ L+ D       NI+ G++ + D F+   F Y LSNPPFG +W+K
Sbjct: 245 NPESYAICKADMMIKGLDPD-------NIKFGNSFTNDGFSDNTFDYMLSNPPFGVEWKK 297

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            +  +++EH+N G  GR+G GLP+I+DGS+LFL H+ +K++   NGG R AIVL+ SPLF
Sbjct: 298 IEKEIKEEHENLGFSGRYGAGLPRINDGSILFLQHMISKMQ-HQNGGSRIAIVLNGSPLF 356

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G AG GES IR+W++ENDL+EAIVALP  LF+ T I TY+W+L+NRK   R+GK+QLIN
Sbjct: 357 TGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYVWVLTNRKRPWRKGKIQLIN 416

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           A + +  +R   G+KR  I+ +Q  +I  IY   + G++S++ D   FGY +I V RPLR
Sbjct: 417 AVEFYKKMRKSLGEKRHEISPEQIDKISKIYGEFKEGEYSKIFDNEDFGYYKITVERPLR 476

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFW-----------------LDILKPMMQQIYP 528
           ++F      + RL+    ++ L+   +                    +++LK M + +Y 
Sbjct: 477 LNFQASDERIERLKEQRAFQNLAKSKKKDPAKKEEEINEGEEQQEAIINVLKSMDETVYK 536

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
               E F K  I     K   +K   S   A + A   +D  A+  TD  G   PD +L 
Sbjct: 537 N--REEFTK--ILDEALKDAGIKLKASLKKAVLKALSEQDETAEICTDSKGNPEPDPDLR 592

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + E V   + I  YF REV PHVPDA+I        D+   ++GYEI F R FY+Y+P R
Sbjct: 593 DNEIVSLKDDINGYFEREVKPHVPDAWI--------DESKTKIGYEIPFTRHFYKYEPPR 644

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           + + I  E+  +E  I   L+++
Sbjct: 645 EPEVIMEEIIELEHDIKEELKKV 667


>gi|297157212|gb|ADI06924.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 698

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 283/717 (39%), Positives = 403/717 (56%), Gaps = 85/717 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L PT+  V E    + G +I+ +
Sbjct: 9   LANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLAPTKDKVLEVAARYQGQDINPD 68

Query: 71  SFVKVA-GYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            F+++A G+SFYNTS Y+L  +   +++    L  Y  +FS NA+ + E +DF+  I RL
Sbjct: 69  RFLRIASGHSFYNTSTYTLKAIAGDASHVAKYLNEYYGAFSPNAREVLERYDFAQQIKRL 128

Query: 128 EKAGLLYKICKNFSGIELHP-------------DTVPDRVMSN-----IYEHLIRRFGSE 169
           E A LLY++   F+ ++L P             D  P  ++SN     I+E LIRRF  +
Sbjct: 129 ETANLLYQVVGRFADLDLRPVKRDADGKVVLGEDGKPVEIVSNHQMGYIFEELIRRFAEQ 188

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            +E A +  TPR+V+ L   LL+ PD DAL    PG +RT+ DP CGTGG L+ A   + 
Sbjct: 189 SNETAGEHFTPREVIRLMVNLLVAPDSDAL--ALPGTVRTVMDPACGTGGMLSAAEERIT 246

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
                  +       GQEL PE+ A+C + M+I+    DP     +NI+ G++ S+D F 
Sbjct: 247 ALNPDATVKVF----GQELNPESWAICRSDMMIK--GQDP-----ENIKFGNSFSQDGFS 295

Query: 288 ---------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSML 337
                    T   F Y L+NPPFG +W+K KDAVE EH+  GE GRFG GLP+I+DGS+L
Sbjct: 296 RDDSRRDKNTPTTFDYLLANPPFGVEWKKVKDAVEDEHERLGESGRFGAGLPRINDGSLL 355

Query: 338 FLMHLANKL---ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           FL H+ +K+   +    GG R AIV + SPLF G A SGES IR+W+LE+D +E IVALP
Sbjct: 356 FLQHMISKMKPVDASGAGGSRIAIVFNGSPLFTGAAESGESRIRQWILEHDWLEGIVALP 415

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQIL 453
             LF+ T I+TY W+LSNRK  +RRGKV L++A D W  +R   G KR+ ++D    +I 
Sbjct: 416 DQLFYNTGISTYFWVLSNRKARDRRGKVVLLDARDYWQKMRKSLGDKRKELSDQHISEIT 475

Query: 454 DIYV-------SRENGKFSRMLD-------YRT--FGYRRIKVLRPLRMSFILDKTGLAR 497
            +Y        + E G    + D       +R   FGYRRI V RPL++ F + +  L+ 
Sbjct: 476 RLYTDALAVVDAAERGSGHDLADRAGKIKVFRNEDFGYRRITVERPLKLRFEVTEETLSA 535

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPY---GWAESFVKESIKSNEAKTLKVKASK 554
           + A     + +      ++  L+P++ + +      W +  +K+++    A  L      
Sbjct: 536 ITASKPIARAT--DAEAFVAALRPLVGKSWTTKSDAWID--LKDAVV---AAGLLWPTGA 588

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA 614
            F  A   A G +DP  +      G+  PD  L +YENVP  E +++Y  REV PHVPDA
Sbjct: 589 PFSKALREAVGVRDPEGEE-QKAKGQPEPDPELRDYENVPLGEDVEEYLRREVLPHVPDA 647

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +ID            +VGYEI   R FY Y+P R L +IDA+LK +E++I  LL E+
Sbjct: 648 WIDHTKT--------KVGYEIPVTRHFYVYKPPRPLAEIDADLKALESEIQALLGEV 696


>gi|294665738|ref|ZP_06731011.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292604474|gb|EFF47852.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 615

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 274/672 (40%), Positives = 382/672 (56%), Gaps = 71/672 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ASL+ FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+ AV  ++ A   + ++
Sbjct: 6   ASLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEKTKPAVLAEFDAKTKAGLN 65

Query: 69  LESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            + F+K  A  SFYNTS   LS L     + R NL +YI +FS  A+ IFE FDF + + 
Sbjct: 66  PDPFLKKKARQSFYNTSSLDLSKLLGDQDHIRQNLYAYIQAFSPEARDIFERFDFHAQVE 125

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL KA LLY + + F+ I+L P+ V +  M +++E LIR+F    +E A +  TPR+V+ 
Sbjct: 126 RLAKANLLYLVTEKFANIDLPPEVVDNATMGSVFEELIRKFAEISNETAGEHFTPREVIR 185

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DD +      ++RT+YDPT GTGG L+ A  ++A+    H     L+ HGQ
Sbjct: 186 LMVGLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSIAGEYLAE----HNPQARLIMHGQ 241

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A MLI+           +NI  G+TLS D   G +F Y LSNPPFG +W
Sbjct: 242 ELNDESYAICKADMLIKG-------QAVENIVAGNTLSDDGHAGHKFDYMLSNPPFGVEW 294

Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V  EHK  G  GRFGPGLP++SDGSMLFLMHL  K+    +GG R  IVL+ SP
Sbjct: 295 KKVEKTVRAEHKTKGFDGRFGPGLPRVSDGSMLFLMHLLAKMRPARDGGSRFGIVLNGSP 354

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K  +R+G VQL
Sbjct: 355 LFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPADRKGWVQL 414

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+A   W  +R   G KR+ + ++     +D  V+R  G F+                  
Sbjct: 415 IDAGSFWQKMRKSLGSKRKQMGEEH----IDT-VTRLFGDFTEA---------------- 453

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP---YGWAESFVKESI 540
             +  ++D TG A+    +     S         + +  + +I+    +G+    V+  +
Sbjct: 454 -ELVTVIDATGNAQGAPQLVTATDSAPQAPEGGRLKRVPIARIFKNEDFGYTTITVERPL 512

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           K      +                G K  +        G+  PD+ L + ENVP  + I 
Sbjct: 513 KDEAGNVV---------------LGLKGKQ-------KGKPQPDSALRDTENVPLDQDIG 550

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           +YF REV PH PDA++        D+E  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 551 EYFAREVLPHAPDAWV--------DQEKSKVGYEIPFNRHFYVFEPPRSLHAIDEELKAV 602

Query: 661 EAQIATLLEEMA 672
            A I  +L E+A
Sbjct: 603 TASIMKMLGELA 614


>gi|167917952|ref|ZP_02505043.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei BCC215]
          Length = 613

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/670 (40%), Positives = 386/670 (57%), Gaps = 69/670 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LEPT++AV  ++ A   + ++ 
Sbjct: 5   ALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEPTKAAVLAEFEAKTKAGLNS 64

Query: 70  ESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E F+  KV    FYNTS   L  L     + R NL  Y+  FS +A+ IFE FDF + I 
Sbjct: 65  EPFLLRKVGDAKFYNTSPLDLVKLLGDQDHIRQNLYDYLRGFSPSARDIFERFDFHTQIE 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL KA LLY + + F  I+LHP TV +  M  ++E LIR+F    +E A +  TPR+V+ 
Sbjct: 125 RLAKANLLYLVTEKFVNIDLHPSTVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIR 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DD +      ++RT+YDPT GTGG L+ A  ++ +    H     L   GQ
Sbjct: 185 LMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEYLLE----HNPAARLTMFGQ 240

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A MLI+       +D++ NI  G+TLS D   G++F Y LSNPPFG +W
Sbjct: 241 ELNDESYAICKADMLIKG------QDVA-NIVAGNTLSDDGHAGRKFDYMLSNPPFGVEW 293

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K + AV +EH + G  GRFGPGLP++SDGSMLFL+HL +K+    +GG R  IVL+ SP
Sbjct: 294 KKVEKAVRQEHEQKGFSGRFGPGLPRVSDGSMLFLLHLVSKMRPAHDGGSRFGIVLNGSP 353

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K + R+G VQL
Sbjct: 354 LFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPQHRKGYVQL 413

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+A+  W  +R   G KR+ ++D+    I  ++      + + + D       R  V   
Sbjct: 414 IDASSFWQKMRKSLGSKRKELSDEHIDTITRLFGDFIEAELATVFDAEGKEVSRWVV--- 470

Query: 484 LRMSFILDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
                     G    EA    + KL+P+ + F          +   +G+    V+  ++ 
Sbjct: 471 --------PAGGNPPEAPFGGKAKLAPISRVF----------KNEDFGYTTITVERPLRD 512

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
            + + +            + A G++           G+   D+ L + ENVP  E I  Y
Sbjct: 513 EQGQVV------------LGAKGKQ----------KGKPQADSALRDTENVPLSEDIGAY 550

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F +EV PH PDA+I        D+E  +VGYEI FNR FY ++P R L  ID ELK V A
Sbjct: 551 FDQEVLPHAPDAWI--------DEEKSKVGYEIPFNRHFYVFEPPRDLHTIDEELKAVSA 602

Query: 663 QIATLLEEMA 672
            I  +LEE+A
Sbjct: 603 NIMKMLEELA 612


>gi|254383776|ref|ZP_04999124.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces sp. Mg1]
 gi|194342669|gb|EDX23635.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces sp. Mg1]
          Length = 632

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 268/659 (40%), Positives = 392/659 (59%), Gaps = 56/659 (8%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGS--TNT 96
           +LRRLEC LEPTR  V E    F G  ID + F+ K +G+SFYN S+ +L  + +   N 
Sbjct: 1   MLRRLECVLEPTREKVAETVDRFAGQEIDTDHFLRKASGHSFYNKSDLTLKKIAADPQNA 60

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             NL+ Y+ +FSDNA+ + + ++F+  + +L+ A LLY++   F+ ++LHPD VP+  M 
Sbjct: 61  AKNLQIYVGAFSDNAREVLDKYEFNQQVRKLDSANLLYQVIGRFTDLDLHPDVVPNHNMG 120

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCG 215
            I+E LIRRF  + +E A +  TPR+V+ L   LL+ PD DAL    PG++RT+ DP CG
Sbjct: 121 YIFEELIRRFAEQSNETAGEHFTPREVIKLMVNLLVAPDADAL--SLPGVVRTVMDPACG 178

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TGG L+ A +H+        +      +GQEL PE+ A+C + ++I+    DP     +N
Sbjct: 179 TGGMLSAAEDHILALNPDATVEV----YGQELNPESWAICRSDLMIKG--QDP-----EN 227

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDG 334
           I+ G++ S D    ++F Y L+NPPFG +W+K K+ VE EHK+ G+ GRFG GLP+I+DG
Sbjct: 228 IRFGNSFSDDGHARRKFDYILANPPFGVEWKKVKEEVEYEHKSLGDAGRFGAGLPRINDG 287

Query: 335 SMLFLMHLANKL---ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+LFL H+ +K+   ++   GG R AIV + SPLF G A SGES IRRW+LEND +EAIV
Sbjct: 288 SLLFLQHMISKMKPVDVSGGGGSRIAIVFNGSPLFTGAAESGESNIRRWILENDWLEAIV 347

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQR- 449
           ALP  LF+ T I+TY WIL+NRK  + +GKV L++A D W  +R   G KR+ + D  R 
Sbjct: 348 ALPDQLFYNTGISTYFWILTNRKDADHKGKVVLLDARDQWQKMRKSLGDKRKELGDGTRG 407

Query: 450 --RQILDI--------YVSRE-----NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
               I DI         V+++     +GK  ++   + FGY+RI V RPL++ F + +  
Sbjct: 408 RPDHIGDITRLYAEAAQVAKDPEHPLHGKV-KVFANQDFGYQRITVERPLKLRFEVTEET 466

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV--KESIKSNEAKTLKVKA 552
           LA L       KL       ++  ++ ++   +P   +++F+  K+++ S     L   +
Sbjct: 467 LAALAEAKPVAKLE--RNEEFVAAVRTLLGSSWPTK-SDAFIALKDAVVS---AGLTWPS 520

Query: 553 SKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVP 612
              F+ A     G +DP  + V  V G   PD +L +YENVP  E ++DY  REV PHVP
Sbjct: 521 GAPFVKAVRETIGVRDPEGE-VQKVKGAAEPDGDLRDYENVPLGEDVEDYLKREVLPHVP 579

Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +A+ID            ++GYEI F R FY Y+P R L +IDAELK +EA+I  LL E+
Sbjct: 580 NAWIDHTKT--------KIGYEIPFTRHFYVYKPPRPLAEIDAELKSLEAEIQALLGEV 630


>gi|194288965|ref|YP_002004872.1| type I restriction-modification methylase m subunit, n-6 DNA
           methylase [Cupriavidus taiwanensis LMG 19424]
 gi|193222800|emb|CAQ68803.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Cupriavidus taiwanensis LMG 19424]
          Length = 612

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 275/670 (41%), Positives = 389/670 (58%), Gaps = 70/670 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L++FIW  A+ L G++K +++G+VILPFT+LRRL+C L  T+ AV  ++ A   + I+ 
Sbjct: 5   ALSSFIWSVADLLRGNYKQSEYGRVILPFTVLRRLDCVLAITKPAVLAEFEAKTQAGINP 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           + F+ + A  SFYN S   L  L     + R NL SY+  FS +A+ IFE FDF   + R
Sbjct: 65  DPFLQRKAKQSFYNVSPLDLVKLLGDQDHIRQNLYSYLQGFSASARDIFERFDFHMQVER 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KA LLY + + F+ I+LHPDTV +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LAKANLLYLVTEKFANIDLHPDTVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   D  +      ++RT+YDPT GTGG L+ A   + +    H     L  +GQE
Sbjct: 185 MVNLIFIEDSDVLTAGNAVVRTIYDPTAGTGGMLSVADEFLRE----HNPSARLTMYGQE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  E++A+C A MLI+       +D+  NI  G+TLS D    ++F Y LSNPPFG +W+
Sbjct: 241 LNDESYAICKADMLIKG------QDVG-NIVAGNTLSDDGHGARKFDYMLSNPPFGVEWK 293

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K + AV +EH + G  GRFGPGLP++SDGSMLFLMHL +K+    +GG R  IVL+ SPL
Sbjct: 294 KVEKAVRQEHEQRGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAADGGSRFGIVLNGSPL 353

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K E+R+G VQLI
Sbjct: 354 FTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPEDRKGWVQLI 413

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+  W  +R   G KR+ +ND+Q   +  ++      + + +LD       R       
Sbjct: 414 DASSFWQKMRKSLGSKRKEMNDEQIAMVTRLFGDFVEAETATVLDADGKEVGR------- 466

Query: 485 RMSFILDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
              +++  T     EA +  R KL+P+ + F          +   +G+    V+  ++  
Sbjct: 467 ---YVVAATAQPP-EAPVGGRVKLAPISRIF----------RNEEFGYTTITVERPLRDE 512

Query: 544 EAK-TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
             +  L VK  +           +  P+A            D++L + ENVP  E I  Y
Sbjct: 513 NGQLMLGVKGKQ-----------KGKPQA------------DSSLRDTENVPLDEEIDAY 549

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           FVREV PH PDA++D    D+K K    VGYEI FNR FY ++P R L  ID ELK V  
Sbjct: 550 FVREVLPHAPDAWVD----DDKSK----VGYEIPFNRHFYVFEPPRDLHTIDEELKAVSV 601

Query: 663 QIATLLEEMA 672
            I  +LEE+A
Sbjct: 602 NIMRMLEELA 611


>gi|229491487|ref|ZP_04385308.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus erythropolis SK121]
 gi|229321168|gb|EEN86968.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus erythropolis SK121]
          Length = 658

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/683 (39%), Positives = 384/683 (56%), Gaps = 50/683 (7%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   +AN IW  A+ L GD+K  ++G+VILP TLLRRL+  +EPTR AVR +  A    N
Sbjct: 6   SHTKMANDIWSIADLLRGDYKRHEYGQVILPLTLLRRLDTVMEPTRDAVRARDSALDMQN 65

Query: 67  IDLESFVKVAG-YSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +  +++A    FYNTS    ST+ +   +   NL  YI  FS N + +   FD  + 
Sbjct: 66  --KQRMLEIAAKLPFYNTSAQDFSTIAADANSVAKNLRDYINGFSSNIREVLARFDLDNQ 123

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL  A LLY++   F+ ++   D + +  M  ++EHLIRRF  + +E A +  TPR+V
Sbjct: 124 ITRLASAKLLYQVVGKFAEMK-DLDKLSNHDMGYVFEHLIRRFAEDSNETAGEHFTPREV 182

Query: 184 VHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           + L   LL+ PD D +  E  G +  + DP CGTGG LT A +H+       ++      
Sbjct: 183 IKLMVNLLIAPDADTVAGE--GQVINILDPACGTGGMLTAAEDHIKSINPKAEV----YL 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL  E+ A+C + ML+R    D        ++ G++ S+D +  K+F Y L+NPPFG
Sbjct: 237 FGQELNGESWAICQSDMLMRSQRGD--------VKFGNSFSEDGYESKKFDYMLANPPFG 288

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            +W+K KD V  E + G  GRFG G P+I+DGS LFL H+ +K+E     G R AIV + 
Sbjct: 289 VEWKKVKDDVLDEAERGHAGRFGAGTPRINDGSFLFLQHMISKMEPVEGKGARLAIVFNG 348

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW+LEND +E +VALP  LF+ T I+TY WILSNRK ++ + KV
Sbjct: 349 SPLFTGAAGSGESEIRRWILENDWLEGVVALPDQLFYNTGISTYFWILSNRKPKKLQKKV 408

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR----------ENGKFSRMLDYR 471
            L++A D W  +R   G KR+ I+  Q   I  +YV            +NGK  ++   R
Sbjct: 409 ILLDARDQWQKMRKSLGDKRKKISAAQINHITKLYVDALEIAECTDHPDNGKI-KIFGTR 467

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-QSFWLDILKPMMQQIYPYG 530
            FGYRRI V RPL++ F + +  LA LE     + LS    +S  +  L+  +  I+   
Sbjct: 468 EFGYRRITVERPLKLRFEISEATLAALEEG---KGLSAWDGRSMAVLALRRSIGNIW--- 521

Query: 531 WAESFVKESIKS--NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           W +    E +++   +A       +++ + AF  A    DP  +  T  +GE + D +L 
Sbjct: 522 WTKKEAAEELRALIADADAEWPSKTQAMLKAFWRAVSVSDPAGEVQTSRDGEVLADPDLR 581

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           +YENVP  E I +YF REV+ HVPDA+I        D+E  +VGYEI   R FY Y P R
Sbjct: 582 DYENVPLDEDIDEYFAREVTSHVPDAWI--------DREKTKVGYEIPITRHFYAYTPPR 633

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
            L +IDAEL  +E QI  LL E+
Sbjct: 634 PLVEIDAELSELENQIQKLLSEV 656


>gi|144900419|emb|CAM77283.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 580

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 265/666 (39%), Positives = 381/666 (57%), Gaps = 96/666 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           SL+ FIW  A+ L GD+K +++G++ILPFT+LRRL+C LEPT++AV  +        ++ 
Sbjct: 5   SLSAFIWSVADLLRGDYKQSEYGRIILPFTVLRRLDCVLEPTKAAVLAELADKQAQGLNP 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F+ + AG SF+NTS  ++  L     N R NL SY+ +FS   + +FE F+F S + R
Sbjct: 65  EPFLLRKAGQSFFNTSPLNMKKLMGDQDNIRENLHSYVNAFSPAVRDVFERFEFDSMVER 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L K+GLLY++ + F+ I+LHPD V +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LAKSGLLYQVTEKFAQIDLHPDVVDNHQMGLVFEELIRKFAELSNETAGEHFTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   DD +  + PG++RT+YDPT GTGG L+ A  ++A+    H     L   GQE
Sbjct: 185 MVNLLFIEDDEVLSK-PGVVRTIYDPTAGTGGMLSIAGEYLAE----HNPQARLTVFGQE 239

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  E++A+C A MLI+       +D++ +I  G+TLS D    K F Y LSNPPFG +W+
Sbjct: 240 LNAESYAICKADMLIKG------QDVA-SIAFGNTLSDDGHPHKTFDYMLSNPPFGVEWK 292

Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  + KEH++ G  GRFGPGLP++SDGSMLFL+HL +K+    +GG R  IVL+ SPL
Sbjct: 293 KVEKEIRKEHESQGFNGRFGPGLPRVSDGSMLFLLHLISKMRPIADGGSRFGIVLNGSPL 352

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WI+SNRK   R+GKVQLI
Sbjct: 353 FTGGAGSGESEIRRYVLENDLLEAIIGLPTDMFYNTGISTYVWIVSNRKPAHRKGKVQLI 412

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           +A+ +W       +K R     +R+++ + ++      F + L+    G       +P+ 
Sbjct: 413 DASGMW-------QKMRKSLGSKRKELSESHIDEVTRLFGQFLESEQDG-------KPI- 457

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            S I D T                                   +G+    V+   + +  
Sbjct: 458 -SRIFDNTA----------------------------------FGYRTITVERPERDDAG 482

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605
           K          IV  +    +  P+AD              L + ENVP  E ++ YF R
Sbjct: 483 K----------IVVGVKGKQKGKPQAD------------AKLRDTENVPLSEDVEAYFKR 520

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV PH  DA+ID         E  ++GYEI FNR FY +QP R L +IDAEL+GV  +I 
Sbjct: 521 EVLPHAADAWIDH--------EKTKIGYEIPFNRHFYVFQPPRPLAEIDAELRGVVGKIQ 572

Query: 666 TLLEEM 671
           T+L E+
Sbjct: 573 TMLAEV 578


>gi|126462619|ref|YP_001043733.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104283|gb|ABN76961.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 611

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/668 (39%), Positives = 370/668 (55%), Gaps = 67/668 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L+ F+W  A+ L GD+K +D+GKVILPFT+LRR++C L PT+ AV  +Y       +   
Sbjct: 6   LSAFLWSVADLLRGDYKQSDYGKVILPFTVLRRIDCVLAPTKEAVLAEYKIRKEQGMPPA 65

Query: 71  SFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            F+ K +G +FYN S + L  L     N   NL +YI  FS   + IF+ F+F + I RL
Sbjct: 66  PFLRKASGQTFYNASRFDLGKLMGDQDNIALNLRAYIQGFSPEVRDIFDHFEFDTQIDRL 125

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            KAGLLY + + F+   LHPD V +  M  ++E LIRRF    +E A +  TPR+V+ L 
Sbjct: 126 AKAGLLYLVTEKFAKAPLHPDRVTNHQMGLVFEELIRRFAELSNETAGEHFTPREVIRLM 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L+   DDA+  + PG++RT+YDPT GTGG L+ A  ++ D      +       GQEL
Sbjct: 186 VNLIFVEDDAVLSK-PGVVRTIYDPTAGTGGMLSVAEEYLTDMNPAASV----ALSGQEL 240

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PE++A+C A MLI+       +D+  NI  G+TLS D   G+ F Y LSNPPFG +W+K
Sbjct: 241 NPESYAICKADMLIKG------QDVG-NIAFGNTLSDDFHPGETFDYMLSNPPFGVEWKK 293

Query: 308 DKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            +  V  EH + G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVL+ SPLF
Sbjct: 294 VEKVVRAEHEQKGHAGRFGPGLPRVSDGSLLFLMHLLSKMRPAAQGGCRFGIVLNGSPLF 353

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G AGSGESEIRR +LE+DL+EAIVALPTD+F+ T IATY+WIL+NRK E R+GKVQLI+
Sbjct: 354 TGGAGSGESEIRRHVLESDLVEAIVALPTDMFYNTGIATYVWILTNRKAEARKGKVQLID 413

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
            +  W  +R   G KR+ + D     I  ++        +R+ D        + V+ P  
Sbjct: 414 GSSFWQKMRKSLGSKRKQMGDADIATITRLFGGFIEADLARVFDAAGKEVGTV-VVTPGE 472

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
                 + G           KL+PL +      ++P       +G+    V+  ++  + 
Sbjct: 473 APPTPPEGGRV---------KLAPLSR------IRPNES----FGYRTITVERPLRDEQG 513

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605
           + +  +  K           +  P+ DP             L + ENVP  E +  YF R
Sbjct: 514 RVVLGQKGKL----------KGKPQPDPA------------LRDTENVPLTEDVAAYFAR 551

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV PH PDA I        D E  +VGYEI FNR FY ++P R L  IDA+L  V  +I 
Sbjct: 552 EVLPHAPDACI--------DPEKTKVGYEIPFNRHFYVFEPPRPLAQIDADLAEVTTRIQ 603

Query: 666 TLLEEMAT 673
            +L  ++ 
Sbjct: 604 AMLAGLSA 611


>gi|326387107|ref|ZP_08208717.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208288|gb|EGD59095.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 594

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/660 (40%), Positives = 379/660 (57%), Gaps = 72/660 (10%)

Query: 19  AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
           A+ L GD++ +++G+VILPFT+LRRL+C L PT+ AV ++  A G  +  L   ++ AG 
Sbjct: 2   ADLLRGDYRQSEYGRVILPFTVLRRLDCVLAPTKDAVLKEAEA-GRPDPFL---IRAAGM 57

Query: 79  SFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
            F+N S   L+ L     N   NL SYI  FS   + IFE F+F++ I RL K GLLY++
Sbjct: 58  QFFNRSPLDLAKLIGDQDNIGTNLLSYIQGFSAEVRDIFEQFEFAAQIDRLAKNGLLYQV 117

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            + F+GI+LHP  V +  M   +E LIR+F    +E A +  TPR+V+ L   L+   DD
Sbjct: 118 TERFAGIDLHPARVDNAQMGLAFEELIRKFAEISNETAGEHFTPREVIRLMVNLIFVEDD 177

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +  + P ++R++YDPT GTGG L+ A  ++ +    H     L   GQEL PE++A+C 
Sbjct: 178 EVLTK-PSVVRSIYDPTAGTGGMLSIAEEYLRE----HNPTAQLTMWGQELNPESYAICK 232

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           A MLI+       +D++K I QG+TLS D     RF Y LSNPPFG +W+K +  V+ EH
Sbjct: 233 ADMLIKG------QDITK-IVQGNTLSNDGHPTARFDYMLSNPPFGVEWKKVQKEVQDEH 285

Query: 317 -KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            + G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVL+ SPLF G AGSGES
Sbjct: 286 LRQGFNGRFGPGLPRVSDGSLLFLMHLLSKMRPWTEGGCRFGIVLNGSPLFTGGAGSGES 345

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           EIRR++LENDL+EAI+ALPTD+F+ T IATY+WILSN+K + R GKVQLI+A+  W  +R
Sbjct: 346 EIRRYVLENDLVEAIIALPTDMFYNTGIATYVWILSNKKPQARTGKVQLIDASSFWQKMR 405

Query: 436 NE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
              G KR+ + +     +  ++ S    + + +LD       R  V+            G
Sbjct: 406 KSLGSKRKEMGEAHIEDVTRLFGSFVEAQLATVLDASGKEVSRQIVI-----------AG 454

Query: 495 LARLEADITWR-KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
            A  EA    + KL+PL + F              +G+    V+  ++    K +  +  
Sbjct: 455 EAAPEAPEGGKVKLAPLSRIF----------PTQAFGYRTITVERPLRDEAGKPVLGQKG 504

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
           K+                       G+  PD+ L + ENVP  E I+ YF REV PH PD
Sbjct: 505 KA----------------------KGKMQPDSALRDTENVPLSEDIETYFEREVKPHAPD 542

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           A+ID+           +VGYEI FNR FY ++P R+L +IDAEL GV A+I  +L E+A 
Sbjct: 543 AWIDETKT--------KVGYEIPFNRHFYVFEPPRRLSEIDAELAGVTARIQVMLAELAA 594


>gi|332664153|ref|YP_004446941.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332967|gb|AEE50068.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 653

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/679 (37%), Positives = 384/679 (56%), Gaps = 54/679 (7%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF-----GGSNI 67
           N IW+ A+ L G ++   + +V+LP T+LRR +C L PT+ AV ++Y        G   +
Sbjct: 9   NLIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKEAVLKEYQQLDSKYHGQDGV 68

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 K++   F+N S  +   L     +   +L SYI  FS N + IFE F+F   I 
Sbjct: 69  IDSRLNKISKQQFHNHSPLTFERLKGAPDSIAKDLVSYINGFSKNVRRIFEYFEFEKEIE 128

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+ +A +LY +   FS ++LHP+ V +  M  I+EHLIR+F    +E A D  TPR+V+ 
Sbjct: 129 RMNEANILYLVVSRFSTVDLHPNAVSNTDMGKIFEHLIRKFNELANETAGDHFTPREVIR 188

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DD L   +PG +RT++DP CGTGG L +A  ++ +    H +   L  +GQ
Sbjct: 189 LMVNLLFINDDKLLT-TPGTVRTMFDPACGTGGMLAEAQAYLRE----HHLEAKLYTYGQ 243

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +      A   + MLI+ +  +    L +NI+ G +L +D F   +F Y LSNPPFG  W
Sbjct: 244 DYNKRAFATAASDMLIKEVAHN---GLGENIKFGDSLIEDQFKENKFDYLLSNPPFGVDW 300

Query: 306 EKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVL 360
           +K +  + +E  K G  GRFG GLP+++DG++LFL H+ +K E         G R AIV 
Sbjct: 301 KKQQSEITRENQKMGFAGRFGAGLPRVNDGALLFLQHMISKFEPVDEANRKYGSRLAIVF 360

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S SPLF G AGSGES IRRW++END +EA+V+LP  +F+ T I TY+WI++NRK + R+G
Sbjct: 361 SGSPLFTGGAGSGESNIRRWIIENDWLEAVVSLPEQMFYNTGIGTYVWIVTNRKEKRRKG 420

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QL++A D +  +R   G KRR I ++Q   I+ +Y   E  K +++ +   FGY R+ 
Sbjct: 421 KIQLLDARDFFVPMRRSLGDKRREIAEEQIVDIVQLYGRFEETKHAKIFNNTDFGYTRVT 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR+ +                 +++   +S +LD    ++  I      ++  +E 
Sbjct: 481 VERPLRLRY-----------------QMTLEDKSRFLDACPHLLDDIQAID--KALGREP 521

Query: 540 I----KSNE--AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
           I    K+++   K L++K   +    F + F ++DP A PV      + PD+ L ++EN+
Sbjct: 522 IMDWNKTDQRIRKILRLKWKATEHKLFRDVFTQRDPEAVPVLKSKNSYEPDSELRDFENI 581

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P  E ++ YF REV PHVPDA+ID+     KDK    VGYEINFN  FY + P RKL+ I
Sbjct: 582 PLSEDVEKYFQREVLPHVPDAWIDR----SKDK----VGYEINFNSHFYVFLPPRKLELI 633

Query: 654 DAELKGVEAQIATLLEEMA 672
           D ELK VE +I  LL+E+ 
Sbjct: 634 DKELKEVEEEILKLLKEVT 652


>gi|25026604|ref|NP_736658.1| putative restriction enzyme subunit S [Corynebacterium efficiens
           YS-314]
 gi|259508263|ref|ZP_05751163.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium efficiens YS-314]
 gi|23491883|dbj|BAC16858.1| putative restriction enzyme subunit S [Corynebacterium efficiens
           YS-314]
 gi|259164151|gb|EEW48705.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium efficiens YS-314]
          Length = 663

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 273/683 (39%), Positives = 387/683 (56%), Gaps = 58/683 (8%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+FIW  A+ L G +K   +G +ILPFT+L RL+  L PT+ AV     A  G + D   
Sbjct: 14  ASFIWSAADLLRGTYKQHQYGNIILPFTVLARLDGVLAPTKQAV---LTAIEGLDPDQAP 70

Query: 72  FVKV----AG--YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +    AG  YSFYN S + L +L     N   NL  Y+ +FS N + IF+ + F  T
Sbjct: 71  SAGMLRNRAGHDYSFYNRSRHDLRSLQGDVDNLEENLRDYVNAFSPNVRDIFDQYKFDET 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I  L    LL +I ++F+  +L P+ V + VM +I+E LIR+F    +E A +  TPR+V
Sbjct: 131 IIDLANNDLLLEILQHFAKADLRPEVVSNEVMGHIFEELIRKFAEASNETAGEHFTPREV 190

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   +LLD D+ L   +PG+IR++YDPT GTGG L+ A N +       ++  +    
Sbjct: 191 IDLMVTILLDGDEEL--STPGVIRSVYDPTAGTGGMLSAADNKIKAFNHQAQVNLL---- 244

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE+ PE++A+C A M+++     P      NI  G+TL+   F  + FHY LSNPPFG 
Sbjct: 245 GQEINPESYAICKADMVVK---GQP----ITNIALGNTLTNPAFEDQTFHYALSNPPFGV 297

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP-NGG--GRAAIV 359
            W+KD+ AVE+EH+  G  GRFGPGLP++SDGS+LFLMHL +KL  P   GG  GR AIV
Sbjct: 298 AWKKDRPAVEREHEIAGHAGRFGPGLPRVSDGSLLFLMHLISKLREPGLQGGAAGRGAIV 357

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGES IR+W+L+ND +EAI+ LPTD+F+ T I+TY+WIL+  K   R+
Sbjct: 358 LNGSPLFTGGAGSGESNIRKWVLDNDYLEAIIGLPTDMFYNTGISTYIWILNKDKDHARK 417

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GKVQLI+AT+++  +R   G KR++++DD    I  +Y +    + S++ +   F YR I
Sbjct: 418 GKVQLIDATEMFVKMRKSIGSKRKMLSDDNITTIATLYGNFVESEHSKIFNTTDFYYRTI 477

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            V RPL++++      + R  A     KL    Q      L          G AE     
Sbjct: 478 TVERPLKLNYAFTPQRIERALAAKPVAKLEGWEQEALDKAL----------GEAEEATHG 527

Query: 539 SIKSNEAKTL----KVKASKSFIV------AFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
            + +N A+      K+ A +  ++      A +   G  D   + VT   G+   D +L 
Sbjct: 528 VVSTNRAQFTKDLKKILADEGLVLKPAVLKAVLTELGEHDDHGELVTKA-GKPEADASLR 586

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP+ + I DY  REV P VPDA+ID+     K KE    G EI F R FY+Y P R
Sbjct: 587 DTENVPWDQDIHDYLKREVHPFVPDAWIDET----KTKE----GVEIPFTRHFYKYVPPR 638

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
            L+DID +L  V  +I   LE++
Sbjct: 639 PLKDIDRDLDEVLGRIRVRLEQV 661


>gi|119896296|ref|YP_931509.1| site-specific DNA-methyltransferase [Azoarcus sp. BH72]
 gi|119668709|emb|CAL92622.1| Site-specific DNA-methyltransferase (adenine-specific) [Azoarcus
           sp. BH72]
          Length = 613

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/671 (39%), Positives = 381/671 (56%), Gaps = 71/671 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L++FIW  A+ L GD+K +++GKVILPFT+LRRL+C LE T+ +V  +  A   + ++ 
Sbjct: 5   ALSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEATKPSVLAELEAKTKAGLNP 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           + F+ + +G SFYNT+   L  L     + R NL +Y+ +FS  A+ IFE FDF + + R
Sbjct: 65  DPFLLRKSGQSFYNTAPLDLVKLLGDQDHIRQNLYTYVQAFSPAARDIFERFDFFTQVER 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KA LLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LAKANLLYLVTEKFANIDLHPEAVDNTSMGLVFEELIRKFAEISNETAGEHFTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   DD +      ++RT+YDPT GTGG L+ A   + +    H     L   GQE
Sbjct: 185 MVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEFLLE----HNPQARLTMFGQE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  E++A+C A MLI+       +D++ NI  G+TLS D    ++F Y LSNPPFG +W+
Sbjct: 241 LNDESYAICKADMLIKG------QDVA-NIVAGNTLSDDGHGARKFDYMLSNPPFGVEWK 293

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K + AV +EH + G  GRFGPGLP++SDGSMLFLMHL +K+    +GG R  IVL+ SPL
Sbjct: 294 KVEKAVRQEHEQKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAQDGGSRFGIVLNGSPL 353

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK  +R+G+VQLI
Sbjct: 354 FTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWIISNRKKADRKGQVQLI 413

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+  W  +R   G KR+ ++D     +  ++     G F+   +Y T            
Sbjct: 414 DASSFWQKMRKSLGSKRKEMSDAHIATVTRLF-----GSFTEA-EYIT------------ 455

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY---PYGWAESFVKESIK 541
               + D  G    E  +     +P        + +  + +I+    +G+    V+  +K
Sbjct: 456 ----VFDAAGQQLGEPQLVTNTDTPPKAPEGGRLKRVPIARIFRNQDFGYTTITVERPLK 511

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +                G K  R        G+   D+ L + ENVP  E I  
Sbjct: 512 DEAGKPV---------------LGSKGAR-------RGKPQADSALRDTENVPLGEDISA 549

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID+           +VGYEI FNR FY ++P R L  ID ELK V 
Sbjct: 550 YFKREVLPHAPDAWIDET--------KSKVGYEIPFNRHFYVFEPPRSLHAIDEELKTVS 601

Query: 662 AQIATLLEEMA 672
           A I  +LE +A
Sbjct: 602 ANIMKMLEGLA 612


>gi|226940440|ref|YP_002795514.1| HsdM [Laribacter hongkongensis HLHK9]
 gi|226715367|gb|ACO74505.1| HsdM [Laribacter hongkongensis HLHK9]
          Length = 613

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 277/679 (40%), Positives = 379/679 (55%), Gaps = 85/679 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L+ FIW  A+ L GD+K +++GKVILPFT+LRRL+C L  T+ AV  +      + ++
Sbjct: 4   SALSAFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLADTKPAVLAELQLRSDAGVN 63

Query: 69  LESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            E F+ + AG SFYNTS   LS L     + R NL +YI  FS  A+ IFE FDF + + 
Sbjct: 64  PEPFLLRKAGQSFYNTSPLDLSKLLGDQDHIRENLYAYIQGFSPAARDIFERFDFFTQVE 123

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL KAGLLY + + F+ I+LHP +V +  M  ++E LIR+F    +E A +  TPR+V+ 
Sbjct: 124 RLAKAGLLYLVTEKFANIDLHPASVDNASMGLVFEELIRKFAEISNETAGEHFTPREVIR 183

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DD +      ++RTLYDPT GTGG L+ A   +A+    H     L   GQ
Sbjct: 184 LMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVAGEFLAE----HNPQARLTLFGQ 239

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A MLI+       +D+  NI  G+TLS D    ++F Y LSNPPFG +W
Sbjct: 240 ELNDESYAICKADMLIKG------QDVG-NIVAGNTLSDDGHGARKFDYMLSNPPFGVEW 292

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K + AV  EH + G  GRFGPGLP++SDGSMLFLMHL +K+     GG R  IVL+ SP
Sbjct: 293 KKVEKAVRDEHERKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPASEGGCRFGIVLNGSP 352

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T IATY+W+LSN+K  +R G+VQL
Sbjct: 353 LFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGIATYIWVLSNKKPADRAGQVQL 412

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIY---VSRENGKFSRMLDYRTFGYRRIKVL 481
           I+A   W       +K R     +R+++ D +   V+R  G F+                
Sbjct: 413 IDAGSFW-------QKMRKSLGSKRKEMSDEHIATVTRLFGDFTEA-------------- 451

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
               M  +LD  G+             P  +   +    P  Q + P G          +
Sbjct: 452 ---EMVTVLDAAGV-------------PQGEPVLVTSTDP--QPVAPEGG---------R 484

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--------NGEWIPDTNLTEYENV 593
                  ++  +  F    I     + P+ D   +V         G+  PDT+L + ENV
Sbjct: 485 LKRVPIARIFDNADFGYTTITV---ERPQRDEAGNVVLGVKGKQKGKPQPDTSLRDTENV 541

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P  + I  YF REV PH PDA+ID       DK   +VGYEI FNR FY ++P R L  I
Sbjct: 542 PLKDDIDAYFQREVLPHAPDAWIDP------DKT--KVGYEIPFNRHFYVFEPPRSLATI 593

Query: 654 DAELKGVEAQIATLLEEMA 672
           D ELK V A+I  +L E+A
Sbjct: 594 DEELKAVSARIMAMLGELA 612


>gi|167718507|ref|ZP_02401743.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei DM98]
          Length = 613

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 269/669 (40%), Positives = 383/669 (57%), Gaps = 67/669 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV  ++ A     ++ 
Sbjct: 5   ALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKGLNP 64

Query: 70  ESFVK--VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E F+   V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF + + 
Sbjct: 65  EPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYTQVE 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL KA LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+V+ 
Sbjct: 125 RLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIR 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DD +      ++R +YDPT GTGG L+ A   + +    H     L  +GQ
Sbjct: 185 LMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLE----HNPVARLRMYGQ 240

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A MLI+  + +       NI  G+TLS D   G++F Y LSNPPFG +W
Sbjct: 241 ELNDESYAICKADMLIKGQDVE-------NIVAGNTLSDDGHAGRQFDYMLSNPPFGVEW 293

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V  E+ + G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+ SP
Sbjct: 294 KKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLNGSP 353

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G VQL
Sbjct: 354 LFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGFVQL 413

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+A+  W  +R   G KRR ++D+    +  ++ +    + + + D    G    + + P
Sbjct: 414 IDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAE--GKELGRWVVP 471

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
              S + D     ++       K  P+ + F          +   +G+    V+ +++  
Sbjct: 472 AG-SNVPDVPAGGKV-------KSVPISRIF----------RNQEFGYTTITVERALRDE 513

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
           + K          +V  +    +  P+A            D++L + ENVP  + I  YF
Sbjct: 514 QGK----------VVLGVKGKQKGKPQA------------DSSLRDTENVPLSDDIGVYF 551

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV PH PDA+ID    ++K+K    VGYEI FNR FY ++P R L  ID ELK V A 
Sbjct: 552 EREVLPHAPDAWID----EQKNK----VGYEIPFNRHFYVFEPPRDLHTIDEELKAVSAN 603

Query: 664 IATLLEEMA 672
           I  +LEE+A
Sbjct: 604 IMRMLEELA 612


>gi|53718591|ref|YP_107577.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei K96243]
 gi|52209005|emb|CAH34944.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei K96243]
          Length = 613

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/669 (39%), Positives = 382/669 (57%), Gaps = 67/669 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV  ++ A     ++ 
Sbjct: 5   ALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKGLNP 64

Query: 70  ESFVK--VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E F+   V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF + + 
Sbjct: 65  EPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYTQVE 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL KA LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+V+ 
Sbjct: 125 RLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIR 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DD +      ++R +YDPT GTGG L+ A   + +    H     L  +GQ
Sbjct: 185 LMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLE----HNPVARLRMYGQ 240

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A MLI+  + +       NI  G+TLS D   G++F Y LSNPPFG +W
Sbjct: 241 ELNDESYAICKADMLIKGQDVE-------NIVAGNTLSDDGHAGRQFDYMLSNPPFGVEW 293

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V  E+ + G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+ SP
Sbjct: 294 KKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLNGSP 353

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G VQL
Sbjct: 354 LFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGFVQL 413

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+A+  W  +R   G KRR ++D+    +  ++ +    + + + D            + 
Sbjct: 414 IDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEG---------KE 464

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           L    +   + +  + A    + + P+ + F          +   +G+    V+ +++  
Sbjct: 465 LGRWVVPAGSNVPNVPAGGKVKSV-PISRIF----------RNQEFGYTTITVERALRDE 513

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
           + K          +V  +    +  P+A            D++L + ENVP  + I  YF
Sbjct: 514 QGK----------VVLGVKGKQKGKPQA------------DSSLRDTENVPLSDDIGVYF 551

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV PH PDA+ID    ++K+K    VGYEI FNR FY ++P R L  ID ELK V A 
Sbjct: 552 EREVLPHAPDAWID----EQKNK----VGYEIPFNRHFYVFEPPRDLHTIDEELKAVSAN 603

Query: 664 IATLLEEMA 672
           I  +LEE+A
Sbjct: 604 IMRMLEELA 612


>gi|289706814|ref|ZP_06503157.1| N-6 DNA Methylase [Micrococcus luteus SK58]
 gi|289556499|gb|EFD49847.1| N-6 DNA Methylase [Micrococcus luteus SK58]
          Length = 653

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/675 (39%), Positives = 384/675 (56%), Gaps = 36/675 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S  +L+NF+W  A+ L G FK   +G ++LP T+LRR+E  ++P R    E   A G  +
Sbjct: 3   SPQNLSNFVWGIADQLRGVFKPNQYGTLVLPLTILRRMEAVMDPHRGFFAE-LAAKGHPD 61

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTLGSTNT--RNNLESYIASFSDNAKAIFEDFDFSST 123
             L++ V+   G +FYN S ++L  +       R NL +Y+  FS N   +F  ++F  T
Sbjct: 62  FVLDNLVQSRTGLTFYNLSPFTLDRILQEPDLLRTNLLAYVDGFSQNVADLFTYYEFDKT 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +A+L++   L+ + + F+ I+L PD V +  M  ++E LIRRF +  +E A +  TPRD 
Sbjct: 122 VAKLDEHDRLFLVLQQFASIDLSPDAVSNAEMGTLFEDLIRRFAAASNETAGEHFTPRDA 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   LL   DD +    P  +RT+YDPT GTGG L+     +     + ++       
Sbjct: 182 VKLLVDLLTANDDDVLTGYP--VRTVYDPTAGTGGMLSLLDERLRRMNPNAEVRLF---- 235

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  +++A+C + +L +  ++D        I +G TL  D    +RF Y LSNPP+G 
Sbjct: 236 GQELNDQSYAICKSELLGKGQDAD-------GIARGDTLKNDAHLTERFDYVLSNPPYGG 288

Query: 304 KWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W+  + AVEKE    G   RF  G P ISDG MLFL  +A+KL     GGGRA IVL+ 
Sbjct: 289 DWKASRTAVEKEIAVGGATNRFPGGTPAISDGQMLFLQLVASKLRPVSEGGGRAGIVLNG 348

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSG SEIRRWLLE+DL++ IVALPTD+F+ T IATY+W+L N K  +RRG+V
Sbjct: 349 SPLFTGGAGSGPSEIRRWLLESDLVDVIVALPTDMFYNTGIATYVWVLDNNKPADRRGRV 408

Query: 423 QLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTFGYR 476
           QLI+A   +T + RN G K + ++   R+++LDIY      S +N +FS++L  + FGYR
Sbjct: 409 QLIDARTFFTKLRRNVGSKNKELSTADRQRVLDIYRDFDAQSEDNAEFSKVLTAQDFGYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            I V RPL++ F +    +A   A     KL    +S     L  +  +++ +    +FV
Sbjct: 469 EITVERPLQLRFEVGDATIAAAFATKPVDKLPDDGRSALETALASLRGRVWDH--QPTFV 526

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
            E  K+   K   V A    + A   A G  DP A+   +  GE  PDT+L + E VP+ 
Sbjct: 527 LELKKA--LKEHGVTAGAPLVKALAGAIGVHDPEAEVAKNKKGEPEPDTSLRDTELVPFG 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             I +YF  EV+PHVP A+I        D+   ++GYEI F R FY+Y P R L++IDAE
Sbjct: 585 RDIHEYFEAEVAPHVPGAWI--------DESKTKIGYEIPFTRLFYKYVPPRPLEEIDAE 636

Query: 657 LKGVEAQIATLLEEM 671
           LK + A+I  LL+E+
Sbjct: 637 LKQLTAEIIELLQEV 651


>gi|288553770|ref|YP_003425705.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification
           system [Bacillus pseudofirmus OF4]
 gi|288544930|gb|ADC48813.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification
           system [Bacillus pseudofirmus OF4]
          Length = 670

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 269/685 (39%), Positives = 383/685 (55%), Gaps = 49/685 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            +FIW  AE L G +K  D+GKVILP  +LRR +C L+ T+  V      F   N +   
Sbjct: 8   VSFIWSIAEILRGPYKPEDYGKVILPLAVLRRFDCVLDSTKEEVLASAEKFASMNEEARE 67

Query: 72  FV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            +  +VA  +F+NTS+Y  + L   S N  +NL  YI  FS  A+ I + FD    I +L
Sbjct: 68  PILNRVAKQNFHNTSKYDFNKLLSDSDNIADNLRDYINGFSKTARDIMDHFDLERQIDKL 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E   LLY   K FS I+LHP+ V +  M  I+E LIRRF      G  D  TPR+V+ L 
Sbjct: 128 ETNNLLYLTIKRFSEIDLHPEVVSNVEMGYIFEELIRRFNENAEAG--DHYTPREVIRLM 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           T LL   DDA     PG+ +TLYD   GTGG  + A  ++A      +    L   GQE+
Sbjct: 186 THLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLASVNFSAQ----LEFFGQEI 241

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             E++A+C A +LI+  ++       KNI+ G+TLS D F   +F Y +SNPP+G  W+ 
Sbjct: 242 NGESYAICKADILIKGADA-------KNIRLGNTLSNDQFPYDKFDYLISNPPYGVDWKS 294

Query: 308 DKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSS 362
            +  +  EH K G  GRFGPG P+ SDG  LFL++L +K++ P       G R AI+++ 
Sbjct: 295 YQKPIVDEHEKQGFNGRFGPGTPRTSDGQFLFLLNLLSKMK-PVTAENPQGSRLAIIMNG 353

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIR+++LENDL+E IVALP DLF+ T IATY+WIL+N K   R+GKV
Sbjct: 354 SPLFTGDAGSGESEIRKYVLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLRKGKV 413

Query: 423 QLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           +L+NA D +    ++ G KR  I ++Q   I+ +Y   + G++ ++ D   FGY +I V 
Sbjct: 414 ELVNAVDFYKKMKKSMGSKRNEITEEQINNIVSLYGDFQEGEYVKIFDNEDFGYAKITVE 473

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSF-----WLDILKPMMQQIYP-------- 528
           RPLR++F +++  + ++  +  +  L+   +        ++  K +  QI          
Sbjct: 474 RPLRLNFQVNEERIVKITEEKGFMNLATSKKKGEAGLKEIEAGKELQTQIIKVLRNLASD 533

Query: 529 --YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             Y   E+F K  I  +  K  ++      + A +N    KD  ADP      E  PDT+
Sbjct: 534 EIYKNREAFTK--ILKDAFKEAEITVGAPVLKAILNGLSEKDETADPCIKNKTEMEPDTD 591

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + ENVP  ESI DYF REV PHVPDA+ID+           ++GYEI F R FY+Y+ 
Sbjct: 592 LRDTENVPLRESIHDYFEREVLPHVPDAWIDETKT--------KIGYEIPFTRQFYKYKA 643

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R  Q+I  E++ +EA+IA  LE++
Sbjct: 644 LRGSQEIMEEIRVLEAEIAEQLEKV 668


>gi|296116345|ref|ZP_06834961.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977164|gb|EFG83926.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 265/666 (39%), Positives = 374/666 (56%), Gaps = 69/666 (10%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   +    ID   F+
Sbjct: 1   MIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWERKGIDPMPFM 60

Query: 74  -KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            K AG  F NTS+++L  +     N   NL +YI +FS  A+ IF+ F F+    RL KA
Sbjct: 61  EKAAGLRFVNTSDFTLKGVLDDPDNLAENLSAYINAFSPAARDIFDHFRFTEQTDRLAKA 120

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TPR+V+ L   L
Sbjct: 121 NLLYLVLEKFISFDLSDKAVDNHRMGQVFEELIRKFSEASNETAGEHFTPREVIKLMVNL 180

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +   DD+L       +RT+YDPT GTGG L+ A   + D    H     L   GQEL PE
Sbjct: 181 IFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLD----HNPDARLTMFGQELNPE 236

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           ++A+C A MLIR       +D+S NI+ G+TLS D     +F Y LSNPPFG +W+K + 
Sbjct: 237 SYAICKADMLIRN------QDVS-NIRLGNTLSDDELADHKFDYMLSNPPFGVEWKKVEK 289

Query: 311 AVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           AV  EH K G  GRFGPGLP+ISDGSMLFL+HL +K+ L  +GG R  IVL+ SPLF G 
Sbjct: 290 AVRAEHEKQGYDGRFGPGLPRISDGSMLFLLHLVHKMRLTKDGGARFGIVLNGSPLFTGA 349

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK + R+GKVQLI+A+ 
Sbjct: 350 AGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPQNRKGKVQLIDASS 409

Query: 430 LWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            W  +R   G KR+ + +D    +  ++   +  + + +        R + +        
Sbjct: 410 FWRKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITATDGTQTRAVVM-------- 461

Query: 489 ILDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
                G A  EA    + +L+PL + F              +G+    V+   +  + K 
Sbjct: 462 ----QGEAPPEAPEGGKVRLAPLSRIF----------NNEDFGYQTITVERPQRDGDGKI 507

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
           +  +  K+                       G+ +PD++L + ENVP  E I  YF REV
Sbjct: 508 VLGQRGKA----------------------KGKPMPDSSLRDTENVPLNEDIHAYFKREV 545

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            PH PDA+ID+  I        ++GYEI FNR+FY ++P R L +IDA+LK V  +I  +
Sbjct: 546 LPHAPDAWIDEDKI--------KIGYEIPFNRYFYVFEPPRPLAEIDADLKEVTTKIMAM 597

Query: 668 LEEMAT 673
           L E++ 
Sbjct: 598 LGELSA 603


>gi|304315217|ref|YP_003850364.1| type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588676|gb|ADL59051.1| predicted type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
          Length = 671

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/688 (37%), Positives = 392/688 (56%), Gaps = 55/688 (7%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           + +FIW  A+ L   +K  ++ KVILPFT+L+R +C LE ++  V  KY  +     +L+
Sbjct: 7   IVSFIWDIADLLRDTYKRNEYQKVILPFTVLKRFDCVLEHSKDDVLRKYNEYKDKIENLD 66

Query: 71  SFVKVAGYS-------FYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             ++ A          FYN S+Y   +L     +   NL  Y+  FS N K IFE+F   
Sbjct: 67  PILEAAAVDKDGRKLGFYNYSKYDFKSLLEDPDHIEENLMHYLDCFSPNVKDIFENFYIK 126

Query: 122 STIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + I +L KA LLY + K FS   ++LHPD + +  M  I+E LIRRF  + +E A    T
Sbjct: 127 THIEKLSKANLLYLLIKKFSESKVDLHPDKISNHDMGIIFEELIRRFSEQSNEEAGQHFT 186

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVV L T LL   +    KE   +I+ +YDP CGTGG LT   N V +      +   
Sbjct: 187 PRDVVKLMTHLLFLENGENLKEK-NLIKKIYDPACGTGGMLTSCKNFVREINDTIDV--- 242

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSN 298
            V +GQE+  E +A+C A MLI+        + ++NI+   STLS D    ++F + +SN
Sbjct: 243 -VLYGQEINEEIYAICKADMLIKG-------ERAENIKGPSSTLSDDQLKDEKFDFMISN 294

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+G+KWE+DK+ VEKE + G  GRFG GLP I DG +LF+ H+ +K++   +   R A+
Sbjct: 295 PPYGRKWEQDKEVVEKEAELGFDGRFGAGLPGIKDGQLLFIQHMLSKMK--DDEKSRIAV 352

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF G AGSGES IRRW++END +E I+ LP  LF+ T+I TY+WIL+N+K+ +R
Sbjct: 353 ITNGSPLFTGDAGSGESNIRRWIIENDYLETIIGLPDQLFYNTSIRTYIWILTNQKSPDR 412

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            GK+QLI+A+  +  +R   GKKR  ++D     IL  Y +       ++ D   FGY +
Sbjct: 413 IGKIQLIDASSKYVKMRKSLGKKRHQLSDRDIDDILTFYRNFSENDMVKIFDNDDFGYVK 472

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDILKPMM 523
           + V RP++++F + +  L  L +   +RKL+                 +   LDI++ + 
Sbjct: 473 VTVERPMQLNFEVTEERLQNLYSMNAFRKLAESKNKNIEKRMIEEEKGKKLQLDIIRALQ 532

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLK-VKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
           +    Y   + F KE       +TLK  + S +FI   I+A    D  AD VTD  G   
Sbjct: 533 KINGHYKNWKDFEKEV-----KRTLKNFELSNAFIRNIIHALSEHDETADYVTDTRGNIK 587

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           PD  L + E +P  E I +YF REV P+ PDA++D+    +KDK    +GYEINFN++FY
Sbjct: 588 PDPKLRDTERIPLKEDIDEYFKREVLPYYPDAWMDR----KKDK----IGYEINFNQYFY 639

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEE 670
           +Y+P R L+DI+++++ + ++I  L+++
Sbjct: 640 KYKPPRSLEDINSDIQKLTSEILELIKD 667


>gi|256825200|ref|YP_003149160.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
 gi|256688593|gb|ACV06395.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
          Length = 663

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/667 (38%), Positives = 375/667 (56%), Gaps = 32/667 (4%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFGGSNIDL 69
           NFIW  A+ L G ++  ++G VILPFT+L R E  LEPT+ AV    EKY +     +  
Sbjct: 19  NFIWGIADMLRGPYRPKEYGTVILPFTVLARFESVLEPTKDAVLAASEKYES-APDLVRH 77

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           E   + +G  FYN S+++LSTLG   N   NL++ I  +++  + +FE FD    I  L+
Sbjct: 78  EMLKRASGQEFYNISQFTLSTLGDPANQAANLQNLIEGYNEEVRQVFERFDMPKIIRDLD 137

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  + K F+ +++HPD V +  M +++E LIRRF     + A D+ TPR+VV L  
Sbjct: 138 DRDRLSAVVKEFAALDVHPDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRLMV 197

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           +LL  PD     + P +IR +YDPTCGTGG L++A   + +   H      L   GQE  
Sbjct: 198 SLLFSPDTEDLSD-PHLIRQVYDPTCGTGGMLSEAHEWMREHNGH----ATLNLFGQEFN 252

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             ++A+  A ++I++ ++       +NI  G TL  D   GK F YC+SNPPFG+ W+  
Sbjct: 253 ALSYAMAKADLIIKKQDA-------QNIFFGDTLLVDGHEGKTFSYCISNPPFGQDWKVQ 305

Query: 309 KDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           + AV+ E  ++G+ GRF  GLP ++DG+MLFL HL +K+     GGGR AIVL+ S LF 
Sbjct: 306 EKAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVLNGSALFT 365

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AG G SEIRR LLENDL++AI+ LPTDLF+ T IATY+W+L N K +ERRGKVQLI+ 
Sbjct: 366 GSAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYIWVLDNNKPQERRGKVQLIDG 425

Query: 428 TDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLRPL 484
           T  W  +R   G KRR++++     I+D+Y   E+   + S++ +   FGYR I V +PL
Sbjct: 426 TAQWVKMRKSIGAKRRMLSEANITSIVDLYGEYEDADPEVSKVFNTEDFGYRTITVEQPL 485

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           R  + +D+    R+EA +    +  L +     + + +    +   W E    +      
Sbjct: 486 RQVYSVDED---RIEAALNLTPIKKLDKETRHLLREALDSLDHEQVWTERGEFDKDLGTA 542

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604
               +V  + +   A I AF    P+ + V    G   PD +L + ENVP  E +  Y  
Sbjct: 543 LGAHRVGLTPANRRAVIGAFAESSPQGEIVKGPKGRIEPDASLRDTENVPLTEDVDAYVE 602

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           REV P  P+A++        D+   ++GYEI F R FY Y+P R L +IDA+++   A++
Sbjct: 603 REVLPWAPEAWV--------DESKTKIGYEIPFTRAFYVYEPPRPLAEIDADVQAAIARV 654

Query: 665 ATLLEEM 671
             L  E+
Sbjct: 655 QGLFAEV 661


>gi|74318698|ref|YP_316438.1| type I restriction-modification system methyltransferase subunit
           [Thiobacillus denitrificans ATCC 25259]
 gi|74058193|gb|AAZ98633.1| type I restriction-modification system methyltransferase subunit
           [Thiobacillus denitrificans ATCC 25259]
          Length = 676

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/685 (38%), Positives = 378/685 (55%), Gaps = 53/685 (7%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L+NFIW  A+ L G ++   + +V+LP  +LRR +C LE T+ AV  KY  + G    LE
Sbjct: 21  LSNFIWSIADLLRGPYRPPQYERVMLPLVVLRRFDCVLESTKDAVLAKYAQYQGK---LE 77

Query: 71  S------FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSS 122
                    K++G  F+N S  S   L     N   +L SYI  FS+N + IFE F+F +
Sbjct: 78  GDALDGVLNKISGQRFHNHSPLSFEKLKGDPDNAHLHLVSYINGFSENVRKIFERFEFGN 137

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I R+ +  +L+ + K F  ++LHP  V +  M  ++E LIRRF  + +E A D  TPR+
Sbjct: 138 EIERMREHNILFLVIKKFCEVDLHPGAVDNIEMGLLFEDLIRRFNEQANETAGDHFTPRE 197

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L  +LL   DD L  + PG +R + DPTCGTGG L++   ++ +    H+    L  
Sbjct: 198 VIRLMVSLLFMHDDDLLSK-PGTVRKMLDPTCGTGGMLSETRKYLRE----HQSGARLFV 252

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQ+  P ++AV  + +L+R   +D     +  I+ G TL  D F G+RF Y L+NPPFG
Sbjct: 253 YGQDFNPRSYAVAASDLLLRTNLADAE---TSTIKFGDTLIDDQFPGERFDYFLANPPFG 309

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNG--GGRAA 357
             W++ +  V +EH K G  GRFG G P+++DG++LFL H+ +K E   P N   G R A
Sbjct: 310 VDWKRQQKDVVREHEKQGFAGRFGAGTPRVNDGALLFLQHMVSKFEPVDPANNLDGSRLA 369

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV + SPLF G AGSGESEIR+W++END +EAIVA+P  +F+ T I TY+W+++NRK   
Sbjct: 370 IVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVAMPEQMFYNTGIGTYVWVVTNRKEAR 429

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRG++QLI+  D W S+R   G KRR  +D     I+  Y    +   S++ D   FGY 
Sbjct: 430 RRGRIQLIDGRDRWQSLRRSLGDKRREFSDAHITDIVREYGDMRDNATSKVFDNADFGYN 489

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           R+ + RPLR++F +       LE    +    P       ++L  +       G   S  
Sbjct: 490 RLTIERPLRLAFQIT------LERKERFLDACP-------ELLNDLQAIDKAIGREASLD 536

Query: 537 KESIKSNEAKTLKVKASK---SFIVAFINAFGRKDPRADPVTDVNG----EWIPDTNLTE 589
             +I      TLK + SK     I AF  AF   +P+A+PV         E+ PD  L +
Sbjct: 537 WNAIWKQAQLTLKERDSKWRAPQIKAFREAFTEINPKAEPVIAKKAGGKVEYEPDPKLRD 596

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
           +ENVP  E ++ YF   V PHV DA+ID            +VGYEINFNR FY++   R 
Sbjct: 597 FENVPLTEDVEAYFEHGVRPHVADAWIDHAKT--------KVGYEINFNRHFYRFTLPRP 648

Query: 650 LQDIDAELKGVEAQIATLLEEMATE 674
           L +IDA+LK  E +I  LL E+  E
Sbjct: 649 LAEIDADLKRAEEEIVRLLREVTAE 673


>gi|332800155|ref|YP_004461654.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
 gi|332697890|gb|AEE92347.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
          Length = 672

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 272/694 (39%), Positives = 386/694 (55%), Gaps = 60/694 (8%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---GGSNID 68
            NFIW  AE L G +K   +G VILP  +LRR +C L  T+  V + Y A    G  N+D
Sbjct: 8   VNFIWTIAELLRGPYKKEQYGDVILPMAVLRRFDCVLAETKEEVLKAYEALKETGLQNMD 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K++   F NTS+Y    L +   N  +NL +Y+  FS NA+ I E FDF   I +
Sbjct: 68  -PVLNKISKQKFNNTSKYDFEKLLADPDNIASNLRNYVNGFSKNAREIIEYFDFDKQITK 126

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LLY I   F+ I+LHPD V +  M  I+E LIRRF      G  D  TPR+V+ L
Sbjct: 127 LNDNNLLYLIVSEFNKIDLHPDAVSNMEMGYIFEELIRRFSEHAEAG--DHYTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-HGQ 245
              +LL+ D      +PG++ T+YD   GTGG L+    ++ +       P I V   GQ
Sbjct: 185 MVNILLNEDKESLT-TPGLVVTVYDCCAGTGGMLSVTEQYLKELN-----PGIQVELFGQ 238

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ P+++++C + MLI+  ++D       NI  G + ++D   GK F Y L+NPPFG +W
Sbjct: 239 EINPQSYSICKSDMLIKGQDAD-------NIILGDSFTEDGHKGKTFRYMLTNPPFGVEW 291

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  + +E+ K G  GRFG GLP+ISDGS+LFL HL +K++     G R AI+ + SP
Sbjct: 292 KKAEKFIREEYEKEGFDGRFGAGLPRISDGSLLFLQHLISKMK-QDEKGSRIAIIFNGSP 350

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------R 418
           LF G AGSGESEIRRW++END++E I+ALP  LF+ T I+TY+WI++NRK  +      R
Sbjct: 351 LFTGDAGSGESEIRRWIIENDMLEGIIALPDQLFYNTGISTYIWIVTNRKNNDLMKGPAR 410

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            GK+QL+NA D +  +R   G KR  I+++Q  +I  IY   +  ++ ++ D   FGYR+
Sbjct: 411 AGKIQLVNAVDFYQKMRKSLGNKRNEISEEQIEEITRIYGEFKENEYCKIFDNEDFGYRK 470

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLS-----------------PLHQSFWLDILK 520
           I V RPLR++F + +  +  L  +  ++KL+                  L Q   + +LK
Sbjct: 471 IVVERPLRLNFQVTEERINNLYNERAFQKLAESKKKGTAGLREIEEGKKLQQQI-IAVLK 529

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
            M   I  Y   E F KE  K+   K   VK   + + A I+A   KD  AD   D  G 
Sbjct: 530 TMNSDIM-YKNREVFTKELKKA--FKHSDVKLDNALLKAIISALSEKDETADICLDAKGN 586

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
             PD +L + ENVP  E I DYF REV PHVPDA+I        D+   ++GYEI F R 
Sbjct: 587 PEPDPDLRDTENVPLKEDIHDYFEREVKPHVPDAWI--------DESKTKIGYEIPFTRH 638

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           FY+Y+P R  ++I  E+K +E  I   L+++  E
Sbjct: 639 FYKYEPLRPSEEILEEIKQLEKSIQQKLQKVIGE 672


>gi|308171853|ref|YP_003915183.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307743225|emb|CBQ74048.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 653

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/673 (39%), Positives = 381/673 (56%), Gaps = 39/673 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L G+FK   +G  ILPFT+LRRL+  L  T+S V E         + +  
Sbjct: 5   ATFIWGIADLLRGNFKAHQYGDFILPFTVLRRLDSVLADTKSKVLEVVAEADAKGLSVRP 64

Query: 72  FV--KVAGY--SFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            +    AG+  SFYNTS+Y L TL   + N R NL SYI +FS+N + IF  +     I 
Sbjct: 65  VLLKTKAGHQHSFYNTSQYDLGTLIGDAENLRENLLSYINAFSENVRDIFVKYKIEDRIE 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LE+  LL  + + F+ ++LHP  V +  M +I+E LIR+F    +E A +  TPR+V+ 
Sbjct: 125 ELEENNLLLLVIQRFAEVDLHPKHVSNDKMGHIFEELIRKFAEASNETAGEHFTPREVIE 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL + DD   ++   ++R++YDPT GTGG L+ A +H+       +    L   GQ
Sbjct: 185 LMVDLLFENDDEALRDE-DIVRSVYDPTAGTGGMLSVAEDHLTAMNPRAR----LTLAGQ 239

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL P+++A+C A M+I+    D        I    TL  D   G  F+YCLSNPPFG  W
Sbjct: 240 ELNPQSYAICKADMVIKGQSVDA-------IVNDDTLRHDGHAGTTFNYCLSNPPFGVDW 292

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSS 362
           +K + AV +EH + G  GRFGPGLP++SDGSMLFL+HL +K+  P +G  GGRAAIVL+ 
Sbjct: 293 KKQEKAVREEHAEKGFAGRFGPGLPRVSDGSMLFLLHLISKMREPAHGSAGGRAAIVLNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGES IR+W+LE D +EAI+ALPTD+F+ T I+TY+W+LS  K+ ERR KV
Sbjct: 353 SPLFTGGAGSGESNIRKWILERDYLEAIIALPTDMFYNTGISTYIWVLSKEKSPERRNKV 412

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QL++ + L+  +R   G KR  +  +  + I+ +Y        S++ +   F YR I V 
Sbjct: 413 QLVDGSKLFRKMRKGLGSKRNELGPEDIQAIVRLYGDFTETDQSKIFNTTDFFYRTITVE 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPL+++F    T   R++  +  + L  L      D+   +        W     +++  
Sbjct: 473 RPLKLNF---ATTTERIDTALAAKPLGKLTADAVADLRTALDSMDATVLWKN---RDNFT 526

Query: 542 SNEAKTLK---VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
           +   +TLK   V+ S   + A I    ++D  AD  T    +  PD  L + ENVP+ E 
Sbjct: 527 TGLKRTLKATGVELSTPQLKALIAGLSKRDDTADVCTGPKSKIEPDAELRDTENVPWNED 586

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  Y  RE+ P VPDA++D    +EK KE    G EI F R FYQY P R L++IDA+L 
Sbjct: 587 IHAYIEREIKPFVPDAWLD----EEKTKE----GCEIPFTRHFYQYIPPRPLEEIDADLD 638

Query: 659 GVEAQIATLLEEM 671
            V  +I   LE++
Sbjct: 639 AVLGRIRARLEQV 651


>gi|16124873|ref|NP_419437.1| type I restriction-modification system, M subunit [Caulobacter
           crescentus CB15]
 gi|13421829|gb|AAK22605.1| type I restriction-modification system, M subunit, putative
           [Caulobacter crescentus CB15]
          Length = 611

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/672 (40%), Positives = 382/672 (56%), Gaps = 73/672 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV  ++       +D 
Sbjct: 5   SLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAAQGVDP 64

Query: 70  ESFVK-VAGYSFYNTSEYSLS-TLG-STNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F++ V+G  FYNT +  L+  LG + N   NL +Y+ +FS   + IFE F+F + I R
Sbjct: 65  EPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFHAQIER 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KAGLLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   DDA   E PG++RT+YDPT GTGG L+ A   +       K    L  +GQE
Sbjct: 185 MVELIFVEDDAALSE-PGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAK----LSMYGQE 239

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C A MLI+    D       NI  G+TLS D     +F Y LSNPPFG +W+
Sbjct: 240 LNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPFGVEWK 292

Query: 307 KDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V  E  + G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ SPL
Sbjct: 293 KVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVLNGSPL 352

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K   RRGK+QLI
Sbjct: 353 FTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRGKLQLI 412

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+  W  +R   G KR+ + +D    I  ++ +    + + + D       ++      
Sbjct: 413 DASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKV------ 466

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP---YGWAESFVKESIK 541
               I++      +  +    KL+PL              +I P   +G+    V+  + 
Sbjct: 467 ----IVEAGSAPPVAPEGGKVKLAPL-------------SKILPNSAFGYRTITVERPLV 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +  +  K+          +  P+AD            +   + ENVP  E ++ 
Sbjct: 510 DEAGKPVLGQKGKN----------KGKPQAD------------SARRDTENVPLSEDVET 547

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID       DK   + GYEI FNR FY ++P R L  IDA+L+ V 
Sbjct: 548 YFAREVLPHAPDAWIDA------DKT--KTGYEIPFNRHFYVFEPPRDLAQIDADLRAVT 599

Query: 662 AQIATLLEEMAT 673
            QI  ++ E+A 
Sbjct: 600 DQIKAMIAELAA 611


>gi|221233593|ref|YP_002516029.1| type I restriction-modification system methylation subunit
           [Caulobacter crescentus NA1000]
 gi|220962765|gb|ACL94121.1| type I restriction-modification system methylation subunit
           [Caulobacter crescentus NA1000]
          Length = 630

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 270/672 (40%), Positives = 382/672 (56%), Gaps = 73/672 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV  ++       +D 
Sbjct: 24  SLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAAQGVDP 83

Query: 70  ESFVK-VAGYSFYNTSEYSLS-TLG-STNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F++ V+G  FYNT +  L+  LG + N   NL +Y+ +FS   + IFE F+F + I R
Sbjct: 84  EPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFHAQIER 143

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KAGLLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 144 LAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPREVIRL 203

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   DDA   E PG++RT+YDPT GTGG L+ A   +       K    L  +GQE
Sbjct: 204 MVELIFVEDDAALSE-PGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAK----LSMYGQE 258

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C A MLI+    D       NI  G+TLS D     +F Y LSNPPFG +W+
Sbjct: 259 LNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPFGVEWK 311

Query: 307 KDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V  E  + G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ SPL
Sbjct: 312 KVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVLNGSPL 371

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K   RRGK+QLI
Sbjct: 372 FTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRGKLQLI 431

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+  W  +R   G KR+ + +D    I  ++ +    + + + D       ++      
Sbjct: 432 DASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKV------ 485

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP---YGWAESFVKESIK 541
               I++      +  +    KL+PL              +I P   +G+    V+  + 
Sbjct: 486 ----IVEAGSAPPVAPEGGKVKLAPL-------------SKILPNSAFGYRTITVERPLV 528

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +  +  K+          +  P+AD            +   + ENVP  E ++ 
Sbjct: 529 DEAGKPVLGQKGKN----------KGKPQAD------------SARRDTENVPLSEDVET 566

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID       DK   + GYEI FNR FY ++P R L  IDA+L+ V 
Sbjct: 567 YFAREVLPHAPDAWIDA------DKT--KTGYEIPFNRHFYVFEPPRDLAQIDADLRAVT 618

Query: 662 AQIATLLEEMAT 673
            QI  ++ E+A 
Sbjct: 619 DQIKAMIAELAA 630


>gi|307244214|ref|ZP_07526329.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492364|gb|EFM64402.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 670

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 261/685 (38%), Positives = 388/685 (56%), Gaps = 50/685 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           +NFIWK A+ L GD+K  ++  VILPFT+L+RL+  L      V +        N D   
Sbjct: 9   SNFIWKIADLLRGDYKQHEYADVILPFTVLKRLDSVLIDNHDEVVKLNKTLTYKNKD-PF 67

Query: 72  FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             + +GY FYN SE++   L     N   N+  YI  FS+NA+ I E F+  + I RLEK
Sbjct: 68  LCRASGYKFYNVSEFTFEKLKDDPNNLDENIVDYIKGFSENAREILEAFNIYTQIERLEK 127

Query: 130 AGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           AGLLY I   F+  I+LHPD V +  M  I+E LIR+F    +E A +  TPR+V+ L  
Sbjct: 128 AGLLYLIVSKFADEIDLHPDRVSNTEMGYIFEELIRKFSEMSNETAGEHFTPREVIRLMV 187

Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           A+L DPD D +   SP  +  LYDP  GTGG L+  +++  +         I+  +GQEL
Sbjct: 188 AVLFDPDMDKI--SSPSFMAKLYDPAAGTGGMLSAGISYAEELNER----AIIEVYGQEL 241

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+A+C +  LI+    +       NI  G++ ++D    ++F Y L NPPFG +W+K
Sbjct: 242 NQSTYAICKSDTLIKGKGYE-------NIYYGNSFTEDGVKNEKFDYMLCNPPFGVEWKK 294

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            +DAV+ E ++ G  GRFG GLP+ISDGS LFL H+ +K++ P NGG R  IV + SPLF
Sbjct: 295 YQDAVKDEAQSLGFDGRFGAGLPRISDGSFLFLQHMISKMKDPKNGGSRIGIVFNGSPLF 354

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G AGSGESEIRRW++EN  +E I+ALP  LF+ T I TY+WILSNRK++ R+GK+QLI+
Sbjct: 355 TGDAGSGESEIRRWIIENGWLETIIALPDQLFYNTGILTYVWILSNRKSKLRQGKIQLID 414

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
            T  +  +R   G KR+ ++++  ++I +IY S  + ++S++ D   F + +I V RPLR
Sbjct: 415 GTSFFERMRKPLGDKRKKLSEEDTKKIANIYGSFVDSEYSKIFDEDDFAHYKITVERPLR 474

Query: 486 MSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDILK--PMMQQIYPY 529
           ++F++    + +L+ +  +  L+                 +    DI+    MM     Y
Sbjct: 475 LNFMVSPDRIEKLKEETAFINLAKSRKKNEETRNKEIEEGEKLQRDIIHVLEMMDDSVFY 534

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
                F K   K+ +A  + +KA      A +NA   KD  A+   D  G   PDT L +
Sbjct: 535 KDRAKFEKILNKAFKAAGISIKA--PLKKAILNALSEKDETAEICRDKKGNPEPDTELRD 592

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E +P+ + I++YF REV P+ PDA+ID      +DK   ++GYEI F R+FY+Y+    
Sbjct: 593 IEQIPFKDDIEEYFKREVLPYAPDAWID------EDK--TKIGYEIPFTRYFYKYEELGD 644

Query: 650 LQDIDAELK----GVEAQIATLLEE 670
            ++   E+K     ++  I++L EE
Sbjct: 645 AKETLEEIKELGLSIQESISSLFEE 669


>gi|296330134|ref|ZP_06872616.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673378|ref|YP_003865050.1| Type I restriction-modification system methyltransferase subunit
           (HsdM) [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152723|gb|EFG93590.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411622|gb|ADM36741.1| Type I restriction-modification system methyltransferase subunit
           (HsdM) [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 670

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 271/684 (39%), Positives = 385/684 (56%), Gaps = 47/684 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            +FIW  AE L G +K  D+GK+ILP  +LRR +C LE T+  V  K   F     D   
Sbjct: 8   VSFIWSIAEILRGPYKPEDYGKIILPLAVLRRFDCVLESTKEEVLAKAEQFATMKEDARE 67

Query: 72  FV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            +  +V+  +F+NTS+Y  + L   S N  +NL  YI  FS  A+ I + FDF   I +L
Sbjct: 68  QILNRVSKQNFHNTSKYDFNKLLTDSDNIADNLRDYINGFSKVARDIMDHFDFDRQIDKL 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  LLY   K FS I+LHP+TV +  M  ++E LIRRF      G  D  TPR+V+ L 
Sbjct: 128 EQNNLLYLTIKRFSEIDLHPETVSNIEMGYVFEELIRRFNENAEAG--DHYTPREVIRLM 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQE 246
           T LL   DDA     PG+ +TLYD   GTGG  + A  ++ +   + H     L   GQE
Sbjct: 186 THLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLLSQNPTAH-----LEFFGQE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           + PE++A+C A +LI+  ++       +NI+ G+TLSKD F   +F Y +SNPP+G  W+
Sbjct: 241 INPESYAICKADLLIKGEDA-------RNIRLGNTLSKDQFPRDKFDYLISNPPYGVDWK 293

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLS 361
             +  +++EH K G  GRFGPG P+ SDG +LFLMHL +K++ P       G R AI+++
Sbjct: 294 SYEKPIKEEHEKQGFNGRFGPGTPRTSDGQLLFLMHLLSKMK-PVTAENPQGSRLAIIMN 352

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIR++LLENDL+E IVALP DLF+ T IATY+WIL+N K    +GK
Sbjct: 353 GSPLFTGDAGSGESEIRKYLLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLHKGK 412

Query: 422 VQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           V+L+NA D      ++ G KR  I ++Q  +I+ +Y   +  ++ ++ D   FGY +I V
Sbjct: 413 VRLVNAVDFSKKMKKSMGSKRNEITEEQINEIVRLYGDAQPNEYVKIFDNEDFGYAKITV 472

Query: 481 LRPLRMSFILDKTGLARLE-----ADITWRKLSPLHQSFWLDILKPMMQQI-YPYGWAES 534
            RPLR++F +++  LAR+      A++   K       F ++  K +  QI Y     ES
Sbjct: 473 ERPLRLNFQVNEERLARVAEGKGFANLATSKKKGDAGHFEIEEGKKLQTQILYVLRTLES 532

Query: 535 FVKESIKSNEAKTLKVKASKSFIV-------AFINAFGRKDPRADPVTDVNGEWIPDTNL 587
                 +    K LK    ++ I        A +     KD  AD       +  PDT+L
Sbjct: 533 ETVYKNRDEFTKVLKDALKQAGITIGAPVLKAILAGLSEKDETADICMKNKTDIEPDTDL 592

Query: 588 TEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
            + ENVP  E+I DYF REV PHVPDA+ID+           ++GYEI F R FY+Y   
Sbjct: 593 RDTENVPLKENIHDYFAREVLPHVPDAWIDETKT--------KIGYEIPFTRQFYKYTAL 644

Query: 648 RKLQDIDAELKGVEAQIATLLEEM 671
           R   +I  E++ +EA+I   L+++
Sbjct: 645 RSSTEIMDEIRALEAEIVEQLKKV 668


>gi|251791802|ref|YP_003006523.1| N-6 DNA methylase [Dickeya zeae Ech1591]
 gi|247540423|gb|ACT09044.1| N-6 DNA methylase [Dickeya zeae Ech1591]
          Length = 708

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 272/726 (37%), Positives = 397/726 (54%), Gaps = 87/726 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVRE-KYLAFGGSNI 67
            LANFIW     L G +K  ++ KVILP T+LRR EC LEPTR  A+ E ++L      +
Sbjct: 8   QLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQDALAEFQWLKTKPERV 67

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGST---------NTRNNLESYIASFSDNAKAIFEDF 118
                 ++ GY FYN S   L+  G           N   NL SYI  FS N +AI E F
Sbjct: 68  QQARLQQITGYRFYNLSRMQLTLSGENIHSLLDDPNNLAPNLNSYINGFSANVRAIMERF 127

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            FS  I  + +  +L+++ K F+ I+L P  V    M  ++E LIR    + +E A +  
Sbjct: 128 KFSEQITHMAEKNILFEVVKAFAKIDLSPQRVDQMQMGYVFEELIRIGAEQSNEEAGEHF 187

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   LLL P++ L K    +++T+YDP CGTGG L+ A  ++    S  +   
Sbjct: 188 TPREVIKLMVNLLLAPEEDLAKSD--VVKTIYDPACGTGGMLSVAEEYIRHLNSDAR--- 242

Query: 239 ILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKR- 291
              PH  GQ+   E  AVC + MLI+  ++D       NI  G T ++D F     G + 
Sbjct: 243 ---PHLYGQDWNDEAWAVCKSDMLIKGEDAD-------NIILGDTFTRDGFDRDSDGNKW 292

Query: 292 -FHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            F Y L+NPPFG +W++ +  ++KE    G  GRFG G P+I+DG++LFL H+ +K+   
Sbjct: 293 IFDYMLANPPFGVEWKQQQKYIQKEADELGYAGRFGAGTPRINDGALLFLQHMISKMRPV 352

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G R  IV + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T IATY+W+
Sbjct: 353 NKDGSRIGIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIATYIWV 412

Query: 410 LSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRR--------QILDIYVSRE 460
           ++NRK +ER+GKVQLI+A + W  + ++ G KRR I D Q R        +I  IY + +
Sbjct: 413 ITNRKAKERKGKVQLIDARNFWVPMEKSLGNKRRRIGDPQDRPKDPNHIAEITRIYENFQ 472

Query: 461 NGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           +G+               S++ D   FGY +I V RPLR++F      +ARLE    ++ 
Sbjct: 473 DGETRTFFLDGKEKELVVSKLFDNDDFGYHKITVERPLRLNFQATAERIARLEEQTAFKN 532

Query: 507 LSPLHQ------SFWLDILKPMMQQIYP-------------YGWAESFVKESIKSNEAKT 547
           L+  ++         ++  +   Q+I               Y   + F+    + + A+ 
Sbjct: 533 LASSNKKNETVRQQEIEAGRARQQEIRNLLADFADQHGDTLYKDRKLFLLALREVDRARN 592

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
           +K+ A++  + A I A G +D  A+   D  GE   DT+L + E VP  ESI++YF REV
Sbjct: 593 IKLSAAE--LKAVIAALGERDETAEICKDKKGEPEADTDLRDTETVPLKESIEEYFQREV 650

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
             HVPDA+ID            ++GYEI  NR FY+Y+  R+L +I+AE+KG+E++I  L
Sbjct: 651 LLHVPDAWIDYAKT--------KIGYEIPLNRHFYRYEEPRELTEIEAEIKGLESEILEL 702

Query: 668 LEEMAT 673
           L+E+  
Sbjct: 703 LKEVTA 708


>gi|149180786|ref|ZP_01859289.1| type I restriction-modification system methyltransferase subunit
           [Bacillus sp. SG-1]
 gi|148851576|gb|EDL65723.1| type I restriction-modification system methyltransferase subunit
           [Bacillus sp. SG-1]
          Length = 734

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/663 (40%), Positives = 378/663 (57%), Gaps = 52/663 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIW  AE L G +K  D+GKVILP  +LRR +C LE T+  V EK+  F   N+  ES
Sbjct: 73  VNFIWTIAEILRGPYKPEDYGKVILPMAVLRRFDCVLEDTKEEVLEKHEQF--ENLPEES 130

Query: 72  ----FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 +VA   F N S+Y  S L   S N  +NL  YI  FS  A+ I + F+F + I 
Sbjct: 131 RDEILNRVAQQKFSNISKYDFSKLLIDSDNIADNLRDYINGFSKTARDIIDYFNFDTKIE 190

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++E+  LLY + K FS I+LHP+ V +  M  I+E LIRRF  +   G  D  TPR+VV 
Sbjct: 191 KMERNDLLYLVVKRFSEIDLHPEVVSNVEMGYIFEELIRRFSEDAEAG--DHYTPREVVR 248

Query: 186 LATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           L   LL L+ +D L K+  G+ +TLYD   GTGG  + A  ++ +          L    
Sbjct: 249 LMVNLLFLEDEDILTKQ--GITQTLYDSCAGTGGMGSVAQEYLMELNPTAD----LEFFA 302

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+  E++A+C A +LI+  E+       +NI+ G+TLS D F   +F Y ++NPP+G +
Sbjct: 303 QEINEESYAICKADILIKGEEA-------RNIRFGNTLSNDAFPEMKFDYLITNPPYGVE 355

Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIV 359
           W+  + AV+ E++N G  GRFG GLP+ISDG +LFL HL +K+    E  P G  R AI+
Sbjct: 356 WKPAEKAVKAEYENLGYNGRFGAGLPRISDGQLLFLQHLVSKMKPVTEDNPKGS-RIAII 414

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           ++ SPLF G AGSGESEIRR+L+ENDL+E IV +PTDLF+ T I+TY+WIL+N K+  R+
Sbjct: 415 MNGSPLFTGDAGSGESEIRRYLIENDLVEGIVGMPTDLFYNTGISTYIWILTNHKSSVRK 474

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QL+NA D +  ++   G KR+ ++D   ++I+ +Y    + +  ++ D   FGY++I
Sbjct: 475 GKIQLVNAVDYYQKMKKSMGSKRKELSDKHLQEIVRLYGDFVDNEKVKIFDNEEFGYQKI 534

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM---QQIYPYGWAESF 535
            V RPLR++F +D   +  L    T+  L+   +     I +      QQ        S 
Sbjct: 535 TVERPLRLNFKIDDARIQELHNQTTFVNLAKSKKKGEAGIQETEQGREQQEKIEEALRSI 594

Query: 536 VKESIKSNEA----------KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
             + +  N A          K L +  + + + A +NA  +KD  AD   D  G   PDT
Sbjct: 595 KNDKVYKNRAEFTNILKKLFKQLDLTVNATLLKATLNALSQKDETADICIDSKGNPEPDT 654

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
           +L + ENVP  ESI +YF REV PHVP+A+ID    D + K    +GYEI F R FY+Y 
Sbjct: 655 DLRDTENVPLKESINEYFKREVKPHVPNAWID----DARTK----IGYEIPFTRHFYEYT 706

Query: 646 PSR 648
             R
Sbjct: 707 ALR 709


>gi|218960558|ref|YP_001740333.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729215|emb|CAO80126.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Cloacamonas acidaminovorans]
          Length = 690

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 266/706 (37%), Positives = 384/706 (54%), Gaps = 72/706 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSN 66
           + +A+FIW     L G +K  ++ KVILPFT+L+R +C L PT+  V  +  +L     N
Sbjct: 6   SQIASFIWSICNLLRGPYKRNEYRKVILPFTVLKRFDCILAPTKDNVLAELPHLYGKSDN 65

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           I  ES +++ G  FYN S   +  L   + N   NL+SYI  FS N + I E F FS  I
Sbjct: 66  IISESLIRITGVPFYNKSRLDMKKLLDDTENIAINLQSYINDFSPNVQKIIEYFAFSEQI 125

Query: 125 ARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           ARL+ A LLY + + F    ++L P  V +  M  ++E LIR    + +E A +  TPR+
Sbjct: 126 ARLQDANLLYLVLQRFVTDELDLSPQAVDNIQMGLVFEELIRIGAEQSNEEAGEHFTPRE 185

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LLL P+  L K    +++T++DP CGTGG LT A  ++ +     K      P
Sbjct: 186 VIKLMVNLLLSPEADLAKSH--VVKTIFDPACGTGGMLTAAETYIKELNRDAK------P 237

Query: 243 H--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           H  GQ+   E++AVC + MLI+        +++K I  G +  +D F+  +F Y L+NPP
Sbjct: 238 HLYGQDWNKESYAVCCSDMLIKG-------EVAK-IHYGCSFEQDGFSTDKFDYMLANPP 289

Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG +W+K +  +  EH K G  GRFG GLP+I+DGS+LFL H+ +K+     GG R  IV
Sbjct: 290 FGVEWKKQQKTITDEHEKLGYNGRFGAGLPRINDGSLLFLQHMISKMRSVEEGGSRIGIV 349

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + SPLF G AGSGES IR+W++END +EAI+A+P  LF+ T I+TY+WI++N+K   R+
Sbjct: 350 FNGSPLFTGDAGSGESNIRKWIIENDWLEAIIAMPDQLFYNTGISTYIWIITNKKEAHRK 409

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDI-YVSRENGKF------------- 464
           GK+QLI+A   +  +R   G KR II D +  +   I  ++R +  F             
Sbjct: 410 GKIQLIDARQFYNKMRKSLGNKRNIIGDGEDNRFDHISLITRIHSDFIDNQELEFTCNGT 469

Query: 465 ------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL------SPLHQ 512
                 S++ D + FGY++I V RPLR++F + +  +ARL+ + T+ KL       P+ +
Sbjct: 470 TKTAIVSKIFDNKDFGYQKITVERPLRLNFQVSQERIARLDNNTTFAKLVESKKKDPIEK 529

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK----------VKASKSFIVAFIN 562
              +D  K +  +I       S     I  N  + LK          +      + A + 
Sbjct: 530 QREMDAGKALQDRI--KAALNSMDGSIIYMNREQYLKALRQALLQHHLSLGNPELKAILE 587

Query: 563 AFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
           A   +D  AD   D  G    DT L + ENVP  E I  YF REV PHVPDA+I      
Sbjct: 588 ALSERDETADICRDSKGMPEADTELRDTENVPLKEDIDTYFKREVLPHVPDAWI------ 641

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
             D    ++GYEI FNR FY YQP R L+ I+AEL  +E +I  LL
Sbjct: 642 --DYSKTKIGYEIPFNRHFYVYQPPRGLEVIEAELFNIEKEIEALL 685


>gi|119491620|ref|ZP_01623492.1| type I restriction-modification system methyltransferase subunit
           [Lyngbya sp. PCC 8106]
 gi|119453349|gb|EAW34513.1| type I restriction-modification system methyltransferase subunit
           [Lyngbya sp. PCC 8106]
          Length = 694

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/683 (39%), Positives = 385/683 (56%), Gaps = 56/683 (8%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + A+FIWK A+ L G+++  ++  VILP  +LRRL+ A+E TR AVR+++  + G   +L
Sbjct: 6   ATADFIWKIADLLRGNYQRREYPDVILPMVVLRRLDQAMENTRQAVRDEWNKYHGKLENL 65

Query: 70  ESFVKVAG--YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +  ++ A      YNTSEY    L     N   NL +Y+  FS +   I E FDF   ++
Sbjct: 66  DPLLRAAAGDSPVYNTSEYYWRRLLDDRPNLAQNLINYLNGFSPDVLDIIEKFDFRRQVS 125

Query: 126 RLEKAGLLYKICKNFSGIELHPDT-----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           RL  A LL  +   F+ I+LHP       V +  M  I+EHLI RF  + +E A +  TP
Sbjct: 126 RLNTANLLPILFDEFTKIDLHPPREDGTGVDNLEMGRIFEHLIYRFNQDNNETAGEHFTP 185

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPP 238
           R+V+ L   LL   DD      P  I T+YDP CGTGG LT+A  ++ D  +  + KI  
Sbjct: 186 REVIRLMVRLLFPEDDPTL--HPDNILTIYDPACGTGGMLTEAKEYIHDIQTRKYQKIGQ 243

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           + +  GQE+ P   AV  +  L++    DPRR     I  G++ S+D +  +RF Y LSN
Sbjct: 244 VHL-FGQEINPTAFAVAKSDFLLK--GEDPRR-----ITFGNSFSEDGYPERRFRYMLSN 295

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKL--ELPPNGGGR 355
           PPFG  W+K +  +++E++  G  GRFG GLP+I+DGS+LFL H+ +K   E P     R
Sbjct: 296 PPFGVDWKKVQYIIKREYETQGFDGRFGAGLPRINDGSLLFLQHILSKRAKEEP----SR 351

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             IV + SPLF G AGSGES IRRW++END +E IVALP  LF+ T I+TYLW+L+NRK+
Sbjct: 352 TVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEGIVALPDQLFYNTGISTYLWVLNNRKS 411

Query: 416 EERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            +R+GK+QL+NA + +  +R   G KR  I ++Q  +I +IY +   G    + D   FG
Sbjct: 412 NKRKGKIQLVNAVNFYQKMRKSLGNKRNEITEEQYNEIANIYHAFSTGDNCLIFDNEDFG 471

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITW------RKLSPLHQSFWLDILKPMMQQIYP 528
           YRRIKV RPLR++F      LARL     +      +K     Q   ++  K   ++I  
Sbjct: 472 YRRIKVERPLRLNFSAAPERLARLPEQSGFAALAESKKKKEEDQKADIEAGKDWQERII- 530

Query: 529 YGWAESFVKESIKSNE-----AKTLK-VKASKSFIVAFINAFGRKDPRADPVTDVNGE-W 581
               +  VK +    +      KTLK  K  +S   A + A   +D  A+PV    GE +
Sbjct: 531 NALKQLPVKVTTDPKQFLPLLDKTLKPFKLKESVKNAILKALTERDENAEPVPAKKGEGY 590

Query: 582 IPDTNLTEYENVPYL-------------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
            PD  L +YENVP               E++ DYF REV P++ DA+ID+ F DEKD + 
Sbjct: 591 EPDPELRDYENVPLQWAPSIYDENVPLKENVYDYFAREVKPYISDAWIDEKFKDEKDGKT 650

Query: 629 GRVGYEINFNRFFYQYQPSRKLQ 651
           G +GYEI+FNR+FY+YQP   L+
Sbjct: 651 GLIGYEISFNRYFYKYQPPEPLE 673


>gi|326201378|ref|ZP_08191250.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325988946|gb|EGD49770.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 669

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 267/681 (39%), Positives = 379/681 (55%), Gaps = 47/681 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNIDL 69
            NFIWK A+ L GD+K +++G V+LPFT+L RL+  L  T+  V E  K   FG   +  
Sbjct: 13  TNFIWKIADLLRGDYKQSEYGDVVLPFTVLCRLDSVLLATKDKVLEIDKTSNFG-DKVKE 71

Query: 70  ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           + F +  G  FYN S ++   L   + N   NL  YI SFS N + I E F+  + I RL
Sbjct: 72  KLFEQATGMKFYNKSNFTFRKLKDDAPNIAENLRDYITSFSANVQEIMEAFNIYAQIERL 131

Query: 128 EKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +KAGLLY I   ++  I+L P+ VP+ +M  I+E LIRRF    +E A +  TPR+V+ L
Sbjct: 132 DKAGLLYMIISKYADEIDLSPEKVPNDLMGYIFEELIRRFSEISNETAGEHFTPREVIRL 191

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+ + D A   E  G + +LYDP  GTGG L    +++        +      +GQE
Sbjct: 192 MVSLIFNEDGAELSED-GKMTSLYDPAAGTGGMLAIGSDYLKSLNQTIYVDC----YGQE 246

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L P T+AVC + MLI+  + D        I +G++ ++D   GK F Y L NPPFG +W+
Sbjct: 247 LNPMTYAVCKSDMLIKGQQYD-------RIYRGNSFTEDGTAGKTFSYMLCNPPFGVEWK 299

Query: 307 K-DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K DK   E+  K G  GRFG GLP+ISDGS LFL H+ +K++    GG R AIV + SPL
Sbjct: 300 KYDKAIKEENEKLGFAGRFGAGLPRISDGSFLFLQHMISKMKPVDEGGSRIAIVFNGSPL 359

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRRW++END +E IVALP  +F+ T I+TY+WI++NRK++ R+GK+QLI
Sbjct: 360 FTGDAGSGESEIRRWIIENDWLETIVALPDQMFYNTGISTYIWIVTNRKSKLRQGKIQLI 419

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           NA D    +R   G KR  I D Q  +I+ I+      ++S++ D   FGY ++ V RP+
Sbjct: 420 NAADFSEKMRKSLGSKRNQITDTQINEIVGIHKDFLPNEYSKIFDNEDFGYWKVTVERPV 479

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYGWAESFVKESIKS 542
           R +F   +  +  L   I ++K      S+  + L  +PM Q +         +   + S
Sbjct: 480 RYNFSCCEDRVYSLP--IVFQKKKNCTWSWSQNDLDGQPMPQDLIDLKNDLVALGNEVYS 537

Query: 543 NE----------AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
           +E           K  K+ A +   + + N    +D       D  G  + +T+L +YE 
Sbjct: 538 DEKQFKALIAPVVKKHKLTAMQQRTLLY-NVLSAEDENGTIYLDAKGNQVANTSLRDYET 596

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP    IQ+YF +EV PHVPDA+ID    + K K+    GYEI F R FY+Y P R    
Sbjct: 597 VPLKTDIQEYFAQEVLPHVPDAWID----ESKTKK----GYEIPFTRQFYKYVPLRASSV 648

Query: 653 IDAELKGVE----AQIATLLE 669
           I +E+K +E    A IA L E
Sbjct: 649 ILSEIKALEDKIQADIADLFE 669


>gi|320352392|ref|YP_004193731.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032]
 gi|320120894|gb|ADW16440.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032]
          Length = 730

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 268/749 (35%), Positives = 390/749 (52%), Gaps = 105/749 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LAFGG 64
           + + LANFIW     L G +K  ++ KVILP T+LRR EC LEPTR A  E++  L    
Sbjct: 5   THSQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQAALEEFQSLKTKP 64

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASFSDNAKAIF 115
             +      ++ G+ FYN S   L+  G           N   NL SYI  FS N +AI 
Sbjct: 65  ERVQQARLQQITGHRFYNLSRMQLTLPGEKIHSLLDDPNNLAPNLNSYINGFSANVRAIM 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F FS  IA + +  +L+++ K F+GI+L P  V    M  ++E LIR    + +E A 
Sbjct: 125 EKFKFSEQIAHMAEKNILFEVIKAFAGIDLSPQRVDQMQMGYVFEELIRIGAEQSNEEAG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   LLL P+  L K    +++T+YDP CGTGG L+ A  ++    S  K
Sbjct: 185 EHFTPREVIKLMVNLLLAPEQDLAKSH--VVKTIYDPACGTGGMLSVAEEYIRHLNSEAK 242

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKR 291
            P +    GQ+   E  AVC + MLI+  +++       NI  G + ++D F     G +
Sbjct: 243 -PKVF---GQDWNDEAWAVCKSDMLIKGEDAN-------NIILGDSFTRDGFDRDSDGNK 291

Query: 292 --FHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             F Y L+NPPFG +W++ +  +++E    G  GRFG G P+I+DG++LFL H+  K+  
Sbjct: 292 WTFDYMLANPPFGVEWKQQQKTIQQEADTLGYAGRFGAGTPRINDGALLFLQHMIAKMRP 351

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R AIV + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T IATY+W
Sbjct: 352 VDKDGSRIAIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIATYIW 411

Query: 409 ILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND--------------------- 446
           +++NRK +ER+GK+QLI+A + W  + ++ G KRR I D                     
Sbjct: 412 VITNRKAKERKGKIQLIDARNFWVQMEKSLGNKRRRIGDPNDPNHPRDPDYIADITRVYE 471

Query: 447 ------------DQRRQILDI-----YVSRENGK------FSRMLDYRTFGYRRIKVLRP 483
                       D+  ++L +      V   NG+       S++ D   FGY +I V RP
Sbjct: 472 NFTDGESRWVVFDKDSKVLGVNGLEPTVDDSNGQKKKYLVVSKLFDNEDFGYHKITVERP 531

Query: 484 LRMSFILDKTGLARLEADITWRKLS-----------------PLHQSFWLDILKPMMQQI 526
           LR++F      +ARLE    ++ L+                    Q    D+L     Q 
Sbjct: 532 LRLNFQATAERIARLEEQTAFKNLATSSKKNEIVRQQEIETGKARQQAIRDLLAAFADQH 591

Query: 527 YP--YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
               +   + F+    + + A+ +K+ A +  + A +   G +D  A    D  G   PD
Sbjct: 592 GDTLFKDRKQFLLALREIDRARGVKLSAPE--LKAVLAVLGERDETASICRDKQGNPEPD 649

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + E VP  E +++YF REV PHVPDA+I        D    +VGYEI  NR FY+Y
Sbjct: 650 TDLRDTETVPLKEGVEEYFRREVLPHVPDAWI--------DHSKTKVGYEIPLNRHFYRY 701

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +P R+L +I+AE+K +E +I  LL E+  
Sbjct: 702 EPPRELAEIEAEIKVLEGEILDLLREVTA 730


>gi|114320943|ref|YP_742626.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227337|gb|ABI57136.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 725

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/734 (35%), Positives = 381/734 (51%), Gaps = 96/734 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV ++Y       +  
Sbjct: 8   QLKSHIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKEAVLKQYEKLSAQGMPE 67

Query: 70  ESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
            +  K+ G        +  YNTS +    L   S N   NL +YI  FS  A+AIFE F 
Sbjct: 68  NAMEKLLGKAADPDRTHPLYNTSPFIFEKLLGDSENIAPNLVAYINGFSPTARAIFERFK 127

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+  I +L+ +  L+ I K  S ++LHPD + +  M  ++EHL+ RF  + +E A D  T
Sbjct: 128 FTDQIEKLDASNRLFTIVKAMSEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDHFT 187

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   L+   +  ++  +PG+ RT+YDP CGTGG L+++   + D  S       
Sbjct: 188 PREVIRLMANLVYTGEQDVY--TPGIYRTIYDPACGTGGMLSESEKFILDQNSQAN---- 241

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHYC 295
           L   GQE   E+ A+C + MLI+  ++        +I  G TL    ++D F GK+FHY 
Sbjct: 242 LALFGQEYNDESWAICCSDMLIKDEDT-------SSIVLGDTLGDGKTRDGFEGKQFHYL 294

Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG-- 352
           L+NPPFG +W+  K  VEKEHK  G  GRFG GLP I+DGS+LFL H+  K+     G  
Sbjct: 295 LANPPFGVEWKDQKTVVEKEHKEMGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYKEGDD 354

Query: 353 ---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+W+
Sbjct: 355 DSVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYVWL 414

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK----- 463
           ++NRK  ERRGKVQLI+ T  +  ++     KR  + +DQ R +  +Y +  +G+     
Sbjct: 415 VTNRKAPERRGKVQLIDGTRFFQRMKKSLNNKRNEVTEDQIRDLTRLYGNNRDGETAEVR 474

Query: 464 ---------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ-- 512
                     SR+ + R FG+ ++ V RPLRM+F      +ARL+    +  L+   +  
Sbjct: 475 INGDTETRVVSRIFENREFGFLKVTVERPLRMNFEASPERIARLDEQTAFANLATSKKRK 534

Query: 513 ------------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKSFIVA 559
                           + ++ ++  + P G + +  V E+  +  AK   +K       A
Sbjct: 535 NEAAAAKEIAEGQKQQEAIRALLASLAPKGQYTDRAVFEADLNAAAKVASLKLPVPIKKA 594

Query: 560 FINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ------------------- 600
             NA G +DP A+   D  G   PD+ L + EN+P  E  Q                   
Sbjct: 595 IFNALGERDPDAEICRDSKGRPEPDSELRDTENIPLPEGTQLPLPMQFGPDKPNDKLVTA 654

Query: 601 ------DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
                  Y  REV PHV DA++        D    +VGYEI  NR FY Y+P R L +I+
Sbjct: 655 FRAEIDAYMAREVLPHVDDAWV--------DYSKTKVGYEIPINRHFYVYKPPRPLDEIE 706

Query: 655 AELKGVEAQIATLL 668
            E+  +E +IA LL
Sbjct: 707 QEITELEGEIAGLL 720


>gi|120612013|ref|YP_971691.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1]
 gi|120590477|gb|ABM33917.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1]
          Length = 709

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 264/723 (36%), Positives = 393/723 (54%), Gaps = 83/723 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID- 68
            LANFIW  A+ L G ++   + +V+LP T+LRR +  L P++ AV ++Y      NI  
Sbjct: 7   QLANFIWSVADLLRGPYRPPQYERVMLPLTVLRRFDAVLAPSKEAVLKRYEPLRAKNIPN 66

Query: 69  ----LESFVKVAG---YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119
               L +  K  G     F+N S+     L     N   +L  YIA FS+N + IFE F+
Sbjct: 67  IDAILNNLAKDEGGTPLGFHNHSQLDFQKLKGDPDNIGRHLADYIAGFSENVRKIFERFE 126

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   I +LE++  LY++   F+ I+LHP  V +  M  ++E LIRRF    +E A D  T
Sbjct: 127 FDKEIEKLEESNRLYQVVSQFAEIDLHPKRVDNITMGLVFEDLIRRFNEAANETAGDHFT 186

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   LLL+PD ++  ++ G+I T+ DP CGTGG L +A N +    +H++   +
Sbjct: 187 PREVIQLMVNLLLEPDTSVLTQA-GVIVTICDPACGTGGMLAEAQNWIR---AHNEQATV 242

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
            V  GQ+  P ++AV  + +LI+  +          +  G+TL+ D F  +RF Y L+NP
Sbjct: 243 KV-FGQDYNPRSYAVAASDLLIKGHKD-------GQVVLGNTLTDDPFPEQRFDYLLANP 294

Query: 300 PFGKKWEKDKDAVEK-EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG-----G 353
           PFG  W+ +K  +++  +  G  G+    LP+I+DG++LFL+++ +K +    G     G
Sbjct: 295 PFGVDWKAEKKVIDRWPNFRGYSGK----LPRINDGALLFLLYMMSKFQEYKPGSRDKPG 350

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R A+V + SPLF G AGSGES+IRRW++E D +EAIVALP  +F+ T I T++W+++NR
Sbjct: 351 SRTAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIGTFIWVVTNR 410

Query: 414 KTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K   R+ K+QLI+A + +T + R+ G KRR ++      +   + + E+ K SR+ D   
Sbjct: 411 KASHRKSKIQLIDARERYTPMKRSLGDKRRYLDQAALDDVTREHGALEDSKTSRVFDNAD 470

Query: 473 FGYRRIKVLRPLRMSF-ILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPYG 530
           FGYRRI VLRPLR+ F I D+T    L       +L    Q+   D+  +P++     +G
Sbjct: 471 FGYRRITVLRPLRLRFQITDETRERFLN---VCPELFDALQAVQEDLGTEPLLDWNQAWG 527

Query: 531 WAESFVKESIKSNE--AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG--------- 579
             +   K    + +  AK  K  A K     F + F   DP A PV D +          
Sbjct: 528 AVQQVFKALPDNIDGWAKGAKGTAQKKI---FRDCFTVVDPEAAPVVDKHHKIEPLDCAA 584

Query: 580 -------------------------------EWIPDTNLTEYENVPYLESIQDYFVREVS 608
                                          E++PD  L + EN+P  E I  Y +REV 
Sbjct: 585 LFPGQTLPADLCKDDLYELLGLHADGKGKHIEYVPDPALKDAENIPLKEDIVSYVLREVR 644

Query: 609 PHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
            +VPDA+ID+  +DE+D  IG+VGYEINFNR F+QYQP R L +IDAEL  VE +I  LL
Sbjct: 645 TYVPDAWIDRATLDEQDGGIGKVGYEINFNRVFFQYQPPRPLHEIDAELAEVEKRILDLL 704

Query: 669 EEM 671
            E+
Sbjct: 705 REV 707


>gi|209523388|ref|ZP_03271943.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209496130|gb|EDZ96430.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 679

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/704 (36%), Positives = 387/704 (54%), Gaps = 77/704 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID- 68
            L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY  +     D 
Sbjct: 13  QLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKQNVLDKYQQYKDRLQDK 72

Query: 69  -LESFVKVA-GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            L+S +  A G  F+N SE++   L     N   +L SYI SFS N + IFE F+F++ I
Sbjct: 73  ALDSMLDTAAGQRFHNRSEFTFEKLKGDPNNLDQHLVSYINSFSQNIREIFERFEFTAEI 132

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A D  TPR+V+
Sbjct: 133 EKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAGDHFTPREVI 192

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L DPDD +  +   +IR L DP CGTGG L++A N++       +    L   G
Sbjct: 193 GLMVDILFDPDDDILTQP--VIRKLLDPACGTGGMLSEAQNYLRKNNKDAQ----LYVFG 246

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y L+NPPF   
Sbjct: 247 QDFNPRAYAIAASDLLIKDNEQSA-------IQFGDSLTDDQYSGETFDYFLANPPFRVY 299

Query: 305 WEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE-LPPNG---GGRAAIV 359
           W+K +  V++EH K G  GRFG GLP+++DGS+LFL H  +K E   P+    G R AIV
Sbjct: 300 WKKQQKEVKREHEKLGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSDKKGSRLAIV 359

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + SPLF G AGSGESEIR+W++E+D +EAIVALP  +F+ T I TYLWI++NRK + R+
Sbjct: 360 FNGSPLFTGGAGSGESEIRKWIIESDWLEAIVALPEQMFYNTGIGTYLWIVTNRKQKHRK 419

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+A   W  +R   G KRR + ++    ++  Y      + S++     FGY R+
Sbjct: 420 GKIQLIDARQRWQPMRRSLGDKRRYMGEEDIAIVVQEYGHFIETETSKIFANEDFGYHRV 479

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI----YPYGWAE- 533
            + RPLR+        L +++ D   R L  +     LD +K + +Q+     P  W E 
Sbjct: 480 PIERPLRL--------LYQMDVDRKLRFLDAV--PHLLDDVKAIDKQLGREPRP-DWNEF 528

Query: 534 -SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----------------- 575
              +K+ +K   ++  K +        F + F  ++P A+PV                  
Sbjct: 529 DRLMKDLLKQRGSRWKKAEKK-----LFRDVFTEREPEAEPVILKEQKAKDEPYARVWGW 583

Query: 576 -DVNGEWI-----PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
             V G+ I     PD+ L ++ENV   + +  YF+ EV PHV DA+ D   I        
Sbjct: 584 FPVAGKKIERMYEPDSTLRDFENVNLQDEVTRYFLEEVEPHVSDAWADGTKI-------- 635

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  YEINFNR+FY+Y P R L +IDA++K +E +I  LL E+  
Sbjct: 636 KSAYEINFNRYFYKYTPPRPLAEIDADIKQMEQEIIKLLREVTV 679


>gi|299531530|ref|ZP_07044936.1| N-6 DNA methylase [Comamonas testosteroni S44]
 gi|298720493|gb|EFI61444.1| N-6 DNA methylase [Comamonas testosteroni S44]
          Length = 581

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/487 (47%), Positives = 315/487 (64%), Gaps = 23/487 (4%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C L  T+SAV  +        ++ 
Sbjct: 5   SLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLTDTKSAVLAELAVKQKQGVNP 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTL-GSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F+ + +G SFYNTS   L TL G T+    NL SY+ +FS   + +FE F+F   + R
Sbjct: 65  EPFLLRKSGQSFYNTSALDLKTLLGDTDHIAQNLYSYVQAFSPAVRDVFERFEFHVQVER 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KAGLLY++ + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LAKAGLLYQVTEKFAQIDLHPNRVSNMQMGLVFEELIRKFSEISNETAGEHFTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   DDA+  + PG++RT+YDPT GTGG L+ A  ++ +   H +    L   GQE
Sbjct: 185 MVNLIFIEDDAILSK-PGVVRTIYDPTAGTGGMLSVAGEYLTEHNPHAR----LTVFGQE 239

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C A MLI+       +D++ +I  G+TLS D  T K F Y LSNPPFG +W+
Sbjct: 240 LNPESYAICKADMLIKG------QDVA-SIAFGNTLSDDGHTAKHFDYMLSNPPFGVEWK 292

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V KEH + G  GRFGPGL ++SDGSMLFL+HL +K+     GG R  IVL+ SPL
Sbjct: 293 KVEKEVRKEHEQQGYNGRFGPGLLRVSDGSMLFLLHLISKMRPAQEGGSRFGIVLNGSPL 352

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK E R+GKVQLI
Sbjct: 353 FTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGIATYVWIISNRKPEARKGKVQLI 412

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRENGK-FSRMLDYRTFGYRRI 478
           +A+ +W  +R   G KR+ ++D     I  ++         +GK  SR+ D   FGY  I
Sbjct: 413 DASGMWQKMRKSLGSKRKELSDAHIEHITRLFGEFVEAKDADGKPLSRIFDNEDFGYHSI 472

Query: 479 KVLRPLR 485
            V RPLR
Sbjct: 473 TVERPLR 479



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 8/95 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+  PD++L + ENVPY E I  YF REV PH PDA+ID       DK   +VGYEI FN
Sbjct: 495 GKPQPDSSLRDTENVPYTEDIMAYFQREVLPHAPDAWID------PDKT--KVGYEIPFN 546

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           R FY ++P R L +ID+ELK    +I  +++ ++ 
Sbjct: 547 RHFYVFKPPRPLAEIDSELKQTTDRILDMIKGLSA 581


>gi|227540802|ref|ZP_03970851.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183431|gb|EEI64403.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 682

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/700 (36%), Positives = 373/700 (53%), Gaps = 57/700 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG- 63
           T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T+  V +     G 
Sbjct: 3   TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVSTKDKVAQIRDQKGV 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFS 121
            + +    + K  GY F+NTS+++L TL +   N   NL SY+  FS NA+ + + +DF 
Sbjct: 63  PAEVKRLQYAKATGYPFWNTSKFTLHTLKNDPDNLEGNLRSYVEGFSPNARDVMKSYDFY 122

Query: 122 STIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + I RL+++ LLY+I   F+   ++  P  V +  M +I+E LIRRF    +E A ++ T
Sbjct: 123 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEYFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +L DPD     E PG + +LYDP  GTGG L++A+    +     +I   
Sbjct: 183 PREVIQLMVEVLFDPDMNAICE-PGFMASLYDPGVGTGGMLSEAIERAHELNEEARIEV- 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L NP
Sbjct: 241 ---YGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 290

Query: 300 PFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNG---- 352
           PFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++   P +     
Sbjct: 291 PFGVEWKKYADPIKDEAEKRGSKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADTQNAP 350

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV + SPLF G AG GES IRRW+LEND +EAIVALP  +F+ T I TY+W+LSN
Sbjct: 351 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIVALPDQMFYNTGILTYIWVLSN 410

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK   R+ KVQLI+AT  +  +R   G+KR+ +  D   QI  IY     G+ S++ D R
Sbjct: 411 RKASIRKNKVQLIDATKFFARMRKPLGEKRKYLTADNIAQIARIYGDFTEGEHSKIFDTR 470

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-----------------QSF 514
            FG+  + V RPLR++F      + R+     ++ L+                    Q  
Sbjct: 471 EFGFHEVTVERPLRLNFTATPERIERVWEQTPFKNLATSKKRSEAARTQEIEDGKKTQRT 530

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
            +D ++ +  Q     W       ++     K   +      + A + A G  DP AD  
Sbjct: 531 IIDAIETLGGQRV---WKNRDEFTAVLKTAFKDAGLAVRIPLLKAIVVALGETDPTADIC 587

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
            D  G   PD  L + E +P  E I  Y  REV P+  DAY+D       DK   ++GYE
Sbjct: 588 RDTKGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVD------PDKT--KIGYE 639

Query: 635 INFNRFFYQYQ----PSRKLQDIDAELKGVEAQIATLLEE 670
           I F R+FYQY+    P+  L +I      ++A IA L  E
Sbjct: 640 IPFTRYFYQYEELGDPTETLAEIQTLGAEIQASIAKLFSE 679


>gi|149175699|ref|ZP_01854318.1| type I restriction-modification [Planctomyces maris DSM 8797]
 gi|148845418|gb|EDL59762.1| type I restriction-modification [Planctomyces maris DSM 8797]
          Length = 580

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/487 (46%), Positives = 322/487 (66%), Gaps = 24/487 (4%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L++FIW  A+ L GD+K +++GKVILPFT+LRRL+C LEPT+ AV ++      +NI+ 
Sbjct: 5   QLSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEPTKDAVLKEKEKREAANINP 64

Query: 70  ESFVKVAGYS-FYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F+K      FYNTS   +  L     + R NL SYI SFSD+ + IFE F+F + + R
Sbjct: 65  EPFLKKKSQQLFYNTSPLDIKKLMGDQDHIRENLFSYIESFSDSVRDIFECFEFHTQVER 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KA LLY + + F+ ++LHPD V +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LAKADLLYMVTEKFANVDLHPDVVSNAQMGLVFEELIRKFAELSNETAGEHFTPREVIRL 184

Query: 187 ATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
              LL ++ DDAL K  PG++R+LYDPT GTGG L+ A  H++      +    LV +GQ
Sbjct: 185 MVNLLFIEDDDALTK--PGIVRSLYDPTAGTGGMLSIAEEHLSGQNPDAR----LVMYGQ 238

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A MLI+       +D+SK I  G+TLS+D   G+ F Y LSNPPFG +W
Sbjct: 239 ELNAESYAICKADMLIKG------QDISK-IIHGNTLSEDGLPGEHFDYMLSNPPFGVEW 291

Query: 306 EKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  +++EH+ +G  GRFGPGLP++SDGS+LFLMHL +K+    +GG R  IVL+ SP
Sbjct: 292 KKIQKEIKREHQQDGFNGRFGPGLPRVSDGSLLFLMHLISKMRPAKDGGSRFGIVLNGSP 351

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WI++NRK + R+GKVQL
Sbjct: 352 LFTGSAGSGESEIRRYVLENDLLEAIIGLPTDMFYNTGISTYIWIVTNRKPKHRKGKVQL 411

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTFGYRRI 478
           I+A+ +W  +R   G KR+ ++ +   +I  ++     V++     SR+     FGY+ I
Sbjct: 412 IDASCMWQKMRKSLGSKRKELSSEHIDEITRLFGNAKKVTKGGTPISRIFKTTDFGYQTI 471

Query: 479 KVLRPLR 485
            V RP R
Sbjct: 472 TVERPER 478



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 8/89 (8%)

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           DT L + E+VP  E + +YF REV PHVPDA+ID       DK   ++GYEI FNR FY 
Sbjct: 499 DTKLRDTEDVPLNEDVDEYFQREVLPHVPDAWIDH------DKT--KIGYEIPFNRHFYV 550

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           ++P R L +IDAELKGV   I  ++ E++
Sbjct: 551 FKPPRTLDEIDAELKGVTDNIVAMIGELS 579


>gi|330971617|gb|EGH71683.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 521

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/538 (43%), Positives = 331/538 (61%), Gaps = 19/538 (3%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + F+   L P+ + +  M  I+E LIR+F    +E A +  TPRD+VHL T+L++   D 
Sbjct: 1   QRFAVAPLEPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRDIVHLTTSLVITDQD- 59

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K +P  I T+YDPT GTGGFL++   ++       K+   L  HGQEL PE++A+C A
Sbjct: 60  -HKLAPNSIVTIYDPTAGTGGFLSEGDEYIQSIS--EKVSVSL--HGQELNPESYAICKA 114

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            MLI+       +D++ +I+ G+TLS D    KRF + LSNPPFG +W+K +  +  EH 
Sbjct: 115 DMLIKG------QDVA-SIKLGNTLSNDQLADKRFDFMLSNPPFGVEWKKVQKQITDEHS 167

Query: 318 N-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           + G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L+ SPLF G AGSGESE
Sbjct: 168 HKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIILNGSPLFTGGAGSGESE 227

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IRR+LL+NDL+EAI+ALPTD+F+ T IATY+WILSN K   R+GKVQLI+ +  +  +R 
Sbjct: 228 IRRYLLQNDLVEAIIALPTDMFYNTGIATYVWILSNHKAAARQGKVQLIDGSQHYAKMRK 287

Query: 437 E-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             G KR+ I +DQ  +++ +Y S E    S++     FGYRRI V RPLR++F      +
Sbjct: 288 SLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIDAFGYRRITVERPLRLNFQTSTERI 347

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
           A++  +   +KL    +   L  L+  M     +   E F K   K+  A +  V  S  
Sbjct: 348 AKVLEEKALQKLDSAARQQLLAALQ-AMDATKLHRNREQFSKLLKKALTAHS--VSLSMP 404

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
            + A +NA  ++DP AD  T   G+   DT L + ENVP  ES+ DYF REV PHVPDA+
Sbjct: 405 ELKALLNALSKRDPEADICTS-KGQLEADTGLRDNENVPLGESVHDYFHREVIPHVPDAW 463

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ID+   D  D E+G VG+EI FNR FY +QP R L +ID +LK    +I  ++E ++ 
Sbjct: 464 IDESKTDALDGEVGIVGFEIPFNRHFYMFQPPRPLAEIDRDLKACTDRIKQMIEGLSA 521


>gi|91225111|ref|ZP_01260333.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Vibrio alginolyticus
           12G01]
 gi|91190054|gb|EAS76325.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Vibrio alginolyticus
           12G01]
          Length = 774

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/516 (45%), Positives = 322/516 (62%), Gaps = 52/516 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGS 65
           +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEP++ AV  +Y      G  
Sbjct: 7   SQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKDAVLTEYERVSKMGLP 66

Query: 66  NIDLESFVKVAGY---------SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               E F+  A +         SF+NTS  +L  +G +N + NLE Y+ SFS +A+ IFE
Sbjct: 67  EEAAEKFLLRATFEEKDRSKNLSFFNTSPMNLGKMGQSNIKANLEKYVQSFSKDAREIFE 126

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F   +  LE A LLYK+ K F+  +L P+++ +  M  ++E LIRRF    +E A +
Sbjct: 127 HFKFDEFVGLLEDANLLYKVVKKFATTDLSPNSISNHDMGLVFEELIRRFAEGSNETAGE 186

Query: 177 FMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           + TPRD+V L T+L+ ++ D+AL K+  G+IRT+YDPT GTGGFL+  M +V      H+
Sbjct: 187 YFTPRDIVRLTTSLVFMEDDEALTKD--GIIRTIYDPTAGTGGFLSSGMEYV------HE 238

Query: 236 IPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           + P  ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F 
Sbjct: 239 LNPKAVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPADQFD 291

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPN- 351
           Y LSNPPFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+    N 
Sbjct: 292 YMLSNPPFGVDWKKIEGEIKDEHQQKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDKKNV 351

Query: 352 -----GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY
Sbjct: 352 DNKVIDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATY 411

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY--------- 456
           +W+LSN+K   R+GKVQLIN  +L T +R   G KR  + D++ R I   +         
Sbjct: 412 VWVLSNKKDPARKGKVQLINGANLSTKMRKSLGSKRHYLTDEEIRTITKNFGDFEEIDTL 471

Query: 457 ----VSRENGKF-SRMLDYRTFGYRRIKVLRPLRMS 487
               V+     F S++ D   FGYRR+ + RPLR+S
Sbjct: 472 TKDGVTDNQKHFASKIFDTYQFGYRRLTIERPLRLS 507



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 89/179 (49%), Gaps = 29/179 (16%)

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT- 575
           D L    QQ   +   E  +K + K+   K   VK  K FI    +A   K+  A+PV  
Sbjct: 599 DSLGGKAQQSDDFNQFELTLKGAFKATGIK-FDVKQKKQFI----DAVTWKNQDAEPVIK 653

Query: 576 --------------DVNG---EWIPDTNLTEYENVPYLES------IQDYFVREVSPHVP 612
                         D  G   E+  D +L + ENVP   S      I+ YF REV PHV 
Sbjct: 654 KVLKETAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDPSVSTSTLIESYFKREVQPHVA 713

Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           DA+I+    D+KD EIG VGYEI FNR FY YQP R L+ IDA+L  V A I  LL+E+
Sbjct: 714 DAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRTLEAIDADLDAVSADIMKLLQEV 772


>gi|56750497|ref|YP_171198.1| type I restriction-modification [Synechococcus elongatus PCC 6301]
 gi|81299869|ref|YP_400077.1| type I restriction-modification [Synechococcus elongatus PCC 7942]
 gi|56685456|dbj|BAD78678.1| type I restriction-modification [Synechococcus elongatus PCC 6301]
 gi|81168750|gb|ABB57090.1| type I restriction-modification [Synechococcus elongatus PCC 7942]
          Length = 675

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/489 (46%), Positives = 311/489 (63%), Gaps = 28/489 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L+ FIW  A+ L GD+K +D+GK+ILPFT+LRRL+C L PT++AV E+ +      +  
Sbjct: 100 NLSAFIWSVADLLRGDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQGLAP 159

Query: 70  ESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E F+ K AG +F NTS   L  L   + N   NL +YI  F+   + IF+ F+F   I R
Sbjct: 160 EPFLLKKAGQNFCNTSPLDLKQLMGDADNIGENLRAYIQGFTPAVRDIFDSFEFHLQIDR 219

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKAGLLY + + F+ I+LHPDTV +  M  ++E LIR+F    +E A +  TPR+V+ L
Sbjct: 220 LEKAGLLYLVTERFAQIDLHPDTVSNAEMGLVFEELIRKFAELSNETAGEHFTPREVIRL 279

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   DDA   + PG++R+LYDPT GTGG L+ A  H+ +     +    LV  GQE
Sbjct: 280 MVNLLFIEDDAALTQ-PGIVRSLYDPTAGTGGMLSVAEEHLTELNPSAR----LVLSGQE 334

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ---GSTLSKDLFTGKRFHYCLSNPPFGK 303
           L PE++A+C A MLI+           +NIQ    G+TLS D     ++ Y LSNPPFG 
Sbjct: 335 LNPESYAICKADMLIK----------GQNIQNICFGNTLSDDKLPDAKYDYMLSNPPFGV 384

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V++E +  G  GRFGPGLP++SDGS+LFL+HL +K+     GG R  IVL+ 
Sbjct: 385 EWKKIQKEVQREAEQLGYSGRFGPGLPRVSDGSLLFLLHLISKMRPASEGGSRLGIVLNG 444

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ALPTD+F+ T I+TY+WILSNRK   R+GKV
Sbjct: 445 SPLFTGGAGSGESEIRRYVLENDLVEAIIALPTDMFYNTGISTYIWILSNRKPASRKGKV 504

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTFGYR 476
           QLI+A+  W  +R   G KR+ ++++Q  +I  ++       R+    S++     FGYR
Sbjct: 505 QLIDASGFWQKMRKSLGSKRKELSEEQIAEITRLFGNFEEADRDGKPVSKIFRNEEFGYR 564

Query: 477 RIKVLRPLR 485
            I V RP R
Sbjct: 565 TITVERPQR 573



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 8/90 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+ + D +L + ENVP  E +  YF REV PHVPDA+ID         E  +VGYEI FN
Sbjct: 589 GQPVADASLRDTENVPLTEDVDTYFQREVLPHVPDAWIDP--------EKTKVGYEIPFN 640

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           R FY + P R L++IDAEL+ V  +I T+L
Sbjct: 641 RHFYVFTPPRSLEEIDAELQQVTDRILTML 670


>gi|114778242|ref|ZP_01453114.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551489|gb|EAU54044.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Mariprofundus
           ferrooxydans PV-1]
          Length = 781

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/534 (44%), Positives = 323/534 (60%), Gaps = 71/534 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +LA +IW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  ++    G  +  
Sbjct: 7   NLAAYIWSLADLLRGDFKQSQYGRIILPFTLLRRLECVLEVSKEAVLAEHARIQGMGLPE 66

Query: 70  ES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+     +K AG SF+NTS+  LS LG +  ++NLESYI  FS +A+ IFE F F+  I 
Sbjct: 67  EAQEKFLLKAAGLSFFNTSKMDLSKLGESGIKDNLESYIQGFSRDAREIFEHFKFTEFIG 126

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L  A LLYKI +     +L P  + +  M  ++E LIRRF    +E A +  TPRD+VH
Sbjct: 127 QLSDANLLYKIVQKVRLTDLSPAAISNHDMGKVFEELIRRFAESSNETAGEHFTPRDIVH 186

Query: 186 LATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVP 242
           L T+L+ ++ DDAL K  PG+IRT+YDPT GTGGFL++ M +V       K+ P  ++  
Sbjct: 187 LTTSLVFMEDDDALTK--PGIIRTIYDPTAGTGGFLSEGMEYV------EKLNPQAVMRA 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL PE++A+C A MLI+       +D+S NI+ G+TLS D     +F Y LSNPPFG
Sbjct: 239 YGQELNPESYAICKADMLIKG------QDVS-NIKLGNTLSGDQLYADKFDYMLSNPPFG 291

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG------- 354
             W+K +  ++ EH   G  GRFGPGLP++SDGS+LFL+HL +KL  P  G G       
Sbjct: 292 VDWKKIEKEIKDEHAIKGFDGRFGPGLPRVSDGSLLFLLHLISKLR-PNEGDGHGRPSVA 350

Query: 355 ----------RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                     R  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IA
Sbjct: 351 GGTTPGATGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIA 410

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQI------LDIYV 457
           TY+W+LSN+K  ER+GKVQLIN  +L   +R   G KR  ++DD    I       ++  
Sbjct: 411 TYVWVLSNKKAAERKGKVQLINGVNLCGKMRKSLGSKRNEMSDDDIATITRAFGAFEVID 470

Query: 458 SRENGK-----------------------FSRMLDYRTFGYRRIKVLRPLRMSF 488
           +RE  K                        S++     FGYRRI + RPLR SF
Sbjct: 471 ARELNKPAEQKSNRGRQSENPKSETPKTFSSKIFASHEFGYRRITIERPLRESF 524



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 64/98 (65%), Gaps = 6/98 (6%)

Query: 580 EWIPDTNLTEYENVP------YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           E+ PD++L + ENVP        E+ + YF +EV P+V DA+ID    D KD EIG VGY
Sbjct: 682 EYKPDSDLRDNENVPLDPSRPVNETNEAYFAKEVQPYVLDAWIDACKRDAKDGEIGIVGY 741

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EI FNR FY YQP R L +IDA+L  V A+I  LL+E+
Sbjct: 742 EIPFNRHFYIYQPPRDLAEIDADLDKVSAEIMQLLQEV 779


>gi|91776954|ref|YP_546710.1| N-6 DNA methylase [Methylobacillus flagellatus KT]
 gi|91710941|gb|ABE50869.1| N-6 DNA methylase [Methylobacillus flagellatus KT]
          Length = 728

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 261/737 (35%), Positives = 389/737 (52%), Gaps = 99/737 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+  V ++Y      N+   
Sbjct: 9   LKSTIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKDKVLKQYEKLTAQNMPES 68

Query: 71  SFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +  ++ G        +  YNTS ++   L     N   NL SYI  FS  A+ IFE F F
Sbjct: 69  AMERLLGRAADPKRNHPLYNTSPFTFERLLGDPENIAPNLVSYINGFSPTARTIFERFKF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  I +L+ +  L+ I K  + ++LHPD + +  M  ++EHL+ RF  + +E A D  TP
Sbjct: 129 TDQIEKLDASNRLFTIVKAMADVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDHFTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   L+   +  ++  +PG+ RT+YDP CGTGG L+++   + D          L
Sbjct: 189 REVIRLMANLVYTGEKDVY--TPGIFRTIYDPACGTGGMLSESEKFILDQNRQAN----L 242

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHYCL 296
              GQE   E+ A+C + MLI+  ++        +I  G TL    ++D F G++FHY L
Sbjct: 243 ALFGQEYNDESWAICCSDMLIKDEDT-------SSIVLGDTLGDGKTRDGFEGEKFHYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           +NPPFG +W+  K  VEKEHK  G  GRFG GLP I+DGS+LFL H+ +K+     G   
Sbjct: 296 ANPPFGVEWKDQKTIVEKEHKELGFAGRFGAGLPAINDGSLLFLQHMISKMHPYKAGDEN 355

Query: 353 --GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+W++
Sbjct: 356 AVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIYTYVWLV 415

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK------ 463
           +NRK  ERRGKVQLI+ T     ++     KR  I +DQ R++  +Y +  +G+      
Sbjct: 416 TNRKAPERRGKVQLIDGTRFCQRMKKSLNNKRHEITEDQIRELTRLYGNFRDGETAEVVI 475

Query: 464 -----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                       SR+ + R FG+ ++ V RPLRM+F      +ARL+A   +  L+   +
Sbjct: 476 DHKTGEKETRVVSRIFENREFGFLKVTVERPLRMNFEASAERIARLDAQSAFANLATSKK 535

Query: 513 SF--------------WLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKSFI 557
                             D ++ ++  +   G + +  V E+     AK   VK +    
Sbjct: 536 RKDDKAAAREIAAGREQQDAIRNLLVSLEAKGRYRDRKVFEADLDKAAKAAGVKLAGPIK 595

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP---------------------YL 596
            A   A G +DP A+   D  G   PD+ L + EN+P                      +
Sbjct: 596 KAIFAALGERDPEAEICRDAKGRPEPDSELRDTENIPLPAGIVLPLPMDFGPDKPNDRLI 655

Query: 597 ESIQD----YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           ES +D    Y  +EV PHVPDA++D       DK   +VGYEI  NR FY Y+P R LQ+
Sbjct: 656 ESFRDVIDAYMAKEVLPHVPDAWVD------YDKT--KVGYEIPINRHFYVYKPPRPLQE 707

Query: 653 IDAELKGVEAQIATLLE 669
           I+A+++ +E +IA LL+
Sbjct: 708 IEADIRQLEGEIADLLK 724


>gi|120601538|ref|YP_965938.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120561767|gb|ABM27511.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 580

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/486 (47%), Positives = 315/486 (64%), Gaps = 22/486 (4%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           SL+ FIW  A+ L GD+K +++G+VILPFT+LRRL+  LE T+ AV E+  +     I  
Sbjct: 5   SLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDSVLESTKVAVLEELESRQKLGIAP 64

Query: 70  ESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           + F+ +V+G SF+NTS   +  L     +   NL SY+  FS   + IFE F+F + I R
Sbjct: 65  DPFLLRVSGQSFFNTSPLDMKKLIGDQDHIGENLYSYLNGFSPEVRDIFERFEFHAQIDR 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L KAGLLY++ + F+ + LHPD V +  M  I+E LIR+F    +E A +  TPR+V+ L
Sbjct: 125 LNKAGLLYQVAERFAQVNLHPDEVDNHQMGLIFEELIRKFAELSNETAGEHFTPREVIRL 184

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   DD +  + PG++RT+YDPT GTGG L+ A  ++ D    H     L   GQE
Sbjct: 185 MVNLIFIEDDDILSK-PGVVRTIYDPTAGTGGMLSIAGEYLDD----HNPDARLTMSGQE 239

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C A MLI+       +D+S NI  G+TLS D   GK F Y LSNPPFG +W+
Sbjct: 240 LNPESYAICKADMLIKG------QDVS-NITFGNTLSDDGHAGKHFDYMLSNPPFGVEWK 292

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V KEH + G  GRFGPGLP+ISDGSMLFL+HL +K+     GG R  IVL+ SPL
Sbjct: 293 KVEKEVRKEHEQQGFNGRFGPGLPRISDGSMLFLLHLISKMRPAAEGGSRFGIVLNGSPL 352

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LENDL+EAIV LPTD+F+ T I+TY+WI+SNRK   R+GKVQLI
Sbjct: 353 FTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGISTYVWIVSNRKAAHRKGKVQLI 412

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIY----VSRENGK-FSRMLDYRTFGYRRIK 479
           +A+ +W  +R   G KR+ ++DD   +I+ +Y     ++ +GK  SR+ +   FGYR I 
Sbjct: 413 DASAMWQKMRKSLGSKRKELSDDHISEIVRLYGEFAEAKLDGKPVSRIFNSSDFGYRTIT 472

Query: 480 VLRPLR 485
           V RP R
Sbjct: 473 VERPTR 478



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 8/91 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+ +PD+ L + ENVP  E ++ YF REV PHVPDA+ID       DK   +VGYEI FN
Sbjct: 494 GKPVPDSKLRDTENVPLHEDVEAYFKREVLPHVPDAWID------HDKT--KVGYEIPFN 545

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           R FY + P R L +IDA+LK    +I  ++E
Sbjct: 546 RHFYVFTPPRPLAEIDADLKQTTDRIKAMIE 576


>gi|228964021|ref|ZP_04125151.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795673|gb|EEM43150.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 253/685 (36%), Positives = 376/685 (54%), Gaps = 50/685 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            +FIW  AE L G +K  D+GKV+LP  +LRR +C LE T+  V   +  F   N D   
Sbjct: 8   VSFIWSIAEVLRGPYKPEDYGKVVLPLAVLRRFDCVLENTKDEVLANFEKFKAMNEDARE 67

Query: 72  FV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            +  ++A  +F+NTS Y+ + L   S N  +NL  YI  FS  A+ I + FDF   I +L
Sbjct: 68  PILNRIAKQNFHNTSNYTFAKLLSDSDNIADNLRDYINGFSKTARDIMDHFDFDRQIEKL 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   LLY   K FS ++LHP+ V +  M  I+E LIRRF      G  D  TPR+VV L 
Sbjct: 128 DNNDLLYLTIKRFSELDLHPEVVSNVEMGYIFEELIRRFSEHAEAG--DHYTPREVVRLM 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            +LL   DD +  +  G+ +TLYD   GTGG  + A  ++ +      +        QE+
Sbjct: 186 VSLLFMQDDDILTKH-GLTQTLYDCAAGTGGMGSVAQEYLTELNKTADLEFF----AQEI 240

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             E++A+C A +LI+  ++       KN++ G+TLS D F G +F Y +SNPP+G  W+ 
Sbjct: 241 NGESYAICKADILIKGADA-------KNVRLGNTLSNDQFKGDKFDYLISNPPYGVDWKS 293

Query: 308 DKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSS 362
            +  ++ EH+  G  GRFGPG P+ SDG +LFLMHL +K++ P       G R AI+++ 
Sbjct: 294 YEKPIKAEHEEQGYAGRFGPGTPRTSDGQLLFLMHLISKMK-PVTAENPQGSRLAIIMNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF+G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K   R+GKV
Sbjct: 353 SPLFSGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIRKGKV 412

Query: 423 QLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QL+NA D      ++ G KR  I+ +Q  +I+ +Y +    +  ++ D   FGY++I V 
Sbjct: 413 QLVNAVDFSKKMKKSMGSKRNEISQEQIDEIVRLYGNFTESEHVKIFDNEEFGYQKITVE 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQIYP-------- 528
           RPLR++F++ +  +  +     +  L+   +        ++  K + ++I          
Sbjct: 473 RPLRLNFLISEERIQCVAEQKAFENLAKSKKKGDNGLAEIEAGKELQEKIIAVLRGLESE 532

Query: 529 --YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             +   E F K  +  +E K   V      + A +     KD  AD       +  P+T+
Sbjct: 533 ELFKNREEFTK--LLKDEFKKKDVAIGAPVLKAILAGLSEKDETADTCMKNKTDAEPNTD 590

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + E+VP  E + +YF REV PHV DA+I        D+   ++GYEI F R FY+Y  
Sbjct: 591 LRDTESVPLKEDMYEYFEREVKPHVSDAWI--------DESKTKIGYEIPFTRQFYKYTK 642

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R   +I AE+K +E  I   L+E+
Sbjct: 643 LRSSDEIMAEIKELEESILEKLKEV 667


>gi|206975574|ref|ZP_03236486.1| N-6 DNA methylase [Bacillus cereus H3081.97]
 gi|206746036|gb|EDZ57431.1| N-6 DNA methylase [Bacillus cereus H3081.97]
          Length = 669

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 261/685 (38%), Positives = 375/685 (54%), Gaps = 50/685 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            +FIW  AE L G +K  D+GKVILP  +LRR +C L+ T+  V   +  F   N D   
Sbjct: 8   VSFIWSIAEVLRGPYKPEDYGKVILPLAVLRRFDCVLDSTKDEVLSNFEKFKAMNEDARE 67

Query: 72  FV--KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            +  ++A  +F+N S Y+ + L S   N  +NL  YI  FS  A+ I + FDF   I +L
Sbjct: 68  PILNRIAKQNFHNASNYNFTKLLSDADNIADNLRDYINGFSKIARDIMDHFDFDRQIEKL 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   LLY   K FS ++LHP+ V +  M  I+E LIRRF      G  D  TPR+VV L 
Sbjct: 128 DNNDLLYLTIKRFSELDLHPEIVSNVEMGYIFEELIRRFSEHAEAG--DHYTPREVVRLM 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            +LL   DD +  + PG+ +TLYD   GTGG  + A  ++ +  S   +        QE+
Sbjct: 186 VSLLFMHDDDMLTK-PGLTQTLYDCAAGTGGMGSVAQEYLKELNSTADLEFF----AQEI 240

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             E++A+C A +LI+  ++       KNI+ G+TLS D F G++F Y +SNPP+G  W+ 
Sbjct: 241 NDESYAICKADILIKGADA-------KNIRLGNTLSNDQFKGEQFDYLISNPPYGVDWKS 293

Query: 308 DKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSS 362
            +  ++ EH+  G  GRFGPG P+ SDG +LFL+HL +K++ P       G R AI+++ 
Sbjct: 294 YEKPIKAEHEEQGYNGRFGPGTPRTSDGQLLFLLHLISKMK-PVTAENPQGSRLAIIMNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K   R+GKV
Sbjct: 353 SPLFTGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIRKGKV 412

Query: 423 QLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLINA D      ++ G KR  I  +Q  +I  +Y   +  ++ ++ D   FGY +I V 
Sbjct: 413 QLINAVDFSKKMKKSMGSKRNEIAQEQIDEIARLYGDFKEREYVKIFDNEDFGYHKITVE 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQIYPYGWAESFV 536
           RPLR++F++ +  + R+     ++ L+   +        +++ K M  +I       S  
Sbjct: 473 RPLRLNFVISEERIQRVAEQKAFQNLTVSKKKGDNGLAEIEVGKAMQAKIMEV--LRSLE 530

Query: 537 KESIKSNE---AKTLKVKASKSFIV-------AFINAFGRKDPRADPVTDVNGEWIPDTN 586
            E +  N     K LK    K  I        A +     KD  A        +  PDT+
Sbjct: 531 SEQLFKNRDEFTKLLKDAFKKEDITIGAPVLKAILAGLSEKDETAHICMKNKTDAEPDTD 590

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + ENVP  E I +YF REV PHV DA+I        D+   +VGYEI F R FY+Y  
Sbjct: 591 LRDTENVPLKEEIYEYFKREVIPHVLDAWI--------DESKTKVGYEIPFTRQFYKYTA 642

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R   +I  E+K +EA I   L+++
Sbjct: 643 LRSSAEIMEEIKELEASILEKLKKV 667


>gi|310639247|ref|YP_003944006.1| type I restriction-modification system methyltransferase subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308752823|gb|ADO43967.1| type I restriction-modification system methyltransferase subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 667

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/698 (36%), Positives = 390/698 (55%), Gaps = 66/698 (9%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + + LAN IW+ A+ L G ++   + +V+LP  +LRR +C L  T+  V  ++    G 
Sbjct: 2   ATHSDLANLIWQIADLLRGPYRPPQYERVMLPLVVLRRFDCVLADTKQKVLAEFERRKGG 61

Query: 66  NIDLESF----VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
            ++ ++      K +G+ F+N S  +  T+   +++   +L+SYI+ FS N + IFE F+
Sbjct: 62  KLEDDALDRMLNKASGHRFHNRSSMTFETMIGDTSDLVGHLQSYISGFSANVRRIFEYFE 121

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++ I ++ +A +LY + K F  ++LHPD V +  M  ++E+LIRRF    +E A D  T
Sbjct: 122 FTNEIEKMNEANILYLVLKEFLKVDLHPDRVKNDQMGLVFENLIRRFNELANETAGDHFT 181

Query: 180 PRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           PR+V+HL   LL +D DD L K  PG +  + DP CGTGG L +A  ++ D   HHK   
Sbjct: 182 PREVIHLMVDLLFMDADDVLSK--PGTVMRMLDPACGTGGMLAEAQRYMRD---HHKEAK 236

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           + V +GQ+      A   + ML+++++ +      +N+Q G + + D F G+ F Y ++N
Sbjct: 237 LYV-YGQDYNKRAFATAASDMLMKQVDHNGG---GENVQFGDSFTDDKFEGQTFDYFIAN 292

Query: 299 PPFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE-LPPNG---G 353
           PPFG  W+K  K+ V +  K  +   +  GLP+++DGS+LFL H+ +K + + P     G
Sbjct: 293 PPFGVDWKKQQKEIVRRHEKAPQDSPWSAGLPRVNDGSLLFLQHMISKFDDVDPKAQKYG 352

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAAIV S SPLF G AG GES IR+W++E D++EAIVALP  +F+ T I TY+WI++N 
Sbjct: 353 SRAAIVFSGSPLFTGGAGGGESNIRKWIIERDMLEAIVALPEQMFYNTGIGTYIWIVTNN 412

Query: 414 KTEERRGKVQLINATDLWTSI-RNEGKKRRIIN-------------DDQRRQILDIYVSR 459
           K   R+G +QL++A D++  + R++G KRR I               DQ  +I+ +Y S 
Sbjct: 413 KPSHRKGDIQLVDARDIYMPMGRSQGDKRRKIGAGKAPEGDDRPDEPDQIAEIVRLYGSF 472

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEA-----DITWRKLSPLHQS 513
                S++ D   FGY R+ + RPLR+ + +     AR L+A     D        L + 
Sbjct: 473 APNSKSKIFDNAEFGYTRVTIERPLRLRYRMTVEDKARFLDAAPHLLDDIQAIDKALGRE 532

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
             LD  K        +G  E  +K+      A  +K+         F N F  KD +A+ 
Sbjct: 533 MELDWNK-------VWGSIEKLLKKRESRWRAPEVKL---------FRNVFTVKDAKAER 576

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           V    G +  D +L ++EN+P  E +  YF REV PHVPDA++D+     KDK    VGY
Sbjct: 577 VKSGKG-FEADPDLRDFENIPLKEDVDAYFAREVLPHVPDAWMDR----SKDK----VGY 627

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EINFNR FYQ+   RKL +IDA+LK  E +I  LL E+
Sbjct: 628 EINFNRHFYQFTTPRKLVEIDADLKKAEDEILRLLREV 665


>gi|148263546|ref|YP_001230252.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146397046|gb|ABQ25679.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 777

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/517 (44%), Positives = 314/517 (60%), Gaps = 59/517 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  K+      N+  E+
Sbjct: 9   AAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEQSKPAVLAKHAEVSKMNLPEEA 68

Query: 72  FVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           + K+       SF+N S   LS LG +  ++NLE+YI  FS +A+ IFE F F+  I +L
Sbjct: 69  YEKMVLRATDESFFNISPMDLSKLGESGIKDNLENYIQCFSKDAREIFEYFKFAEFIGQL 128

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             A LLYK+ + F+  +L P  + +  M  ++E LIRRF    +E A +  TPRD+V L 
Sbjct: 129 NDANLLYKVVQKFANTDLSPQAISNYEMGLVFEELIRRFAESSNETAGEHFTPRDIVRLT 188

Query: 188 TALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
           T+L+ ++ D+AL ++  G+IRT+YDPT GTGGFL+  M +V +         ++   GQE
Sbjct: 189 TSLVFMEDDEALTRD--GIIRTIYDPTAGTGGFLSSGMEYVYELNPK----AVMRAFGQE 242

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y LSNPPFG  W+
Sbjct: 243 LNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLYADKFDYMLSNPPFGVDWK 295

Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  +  EH   G  GRFGPGLP++SDGS+LFLMHL +KL    +GGGR  I+L+ SPL
Sbjct: 296 KVETEINDEHTLKGFAGRFGPGLPRVSDGSLLFLMHLISKLRDTKDGGGRIGIILNGSPL 355

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W+LSN+K  ER+GKVQLI
Sbjct: 356 FTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVLSNKKDPERKGKVQLI 415

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF-------------------- 464
           N  +L   +R   G KR ++ +D    I     +R  G+F                    
Sbjct: 416 NGVNLCAKMRKSLGSKRNVMGEDDIATI-----TRAFGRFERVDTLTLDKPDEVKSNRGR 470

Query: 465 --------------SRMLDYRTFGYRRIKVLRPLRMS 487
                         S++     FGYRRI V RPLR+S
Sbjct: 471 QADNPKAPEPKTFSSKIFATTDFGYRRITVERPLRLS 507



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 6/98 (6%)

Query: 580 EWIPDTNLTEYENVP------YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           E+  D +L + EN+P        E+++ YF +EV+PHVPDA+ID    DEKD E+G VGY
Sbjct: 678 EFQADGDLRDNENIPLDPSRSVTETVEAYFKKEVAPHVPDAWIDAGKRDEKDGELGIVGY 737

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EI FNR FY Y P R L +IDA+L  V A+I  LL E+
Sbjct: 738 EIPFNRHFYVYAPPRDLVEIDADLDVVSAEIMALLREV 775


>gi|284052080|ref|ZP_06382290.1| type I restriction-modification system methyltransferase subunit
           [Arthrospira platensis str. Paraca]
 gi|291566233|dbj|BAI88505.1| type I restriction-modification system M subunit [Arthrospira
           platensis NIES-39]
          Length = 681

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 387/712 (54%), Gaps = 81/712 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY     
Sbjct: 8   TVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQCKD 67

Query: 65  SNID--LESFV-KVAG--YSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFED 117
              D  L+S + K AG  + F+N SE++   L     N   +L +YI SFS N + IFE 
Sbjct: 68  RFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIFER 127

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A D 
Sbjct: 128 FEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAGDH 187

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   +L DPDD +  +   +I  L DP CGTGG L+++ N++ +     +  
Sbjct: 188 FTPREVIRLMVDILFDPDDDILTKP--VICRLLDPACGTGGMLSESQNYLRENNKEAQ-- 243

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y L+
Sbjct: 244 --LWVFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYFLA 294

Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE-LPPNG--- 352
           NPPFG  W+K +  V++EH K G  GRFG GLP+++DGS+LFL H  +K E   P+    
Sbjct: 295 NPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSDKK 354

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP  +F+ T I TY+WI++N
Sbjct: 355 GSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIVTN 414

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y +    + S++    
Sbjct: 415 RKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFKNE 474

Query: 472 TFGYRRIKVLRPLRMSFILDK-------TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            FGY R+ + RPLR+ + +D         G+  L  D+               I K + +
Sbjct: 475 DFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPHLLEDVQ-------------AIDKQLGR 521

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT--------- 575
           +  P  W E    + + ++  K    +  K+    F + F  ++P A+PV          
Sbjct: 522 EPRP-DWNEF---DRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDE 577

Query: 576 ---------DVNGEWI-----PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
                     V G+ I     PD+ L ++ENV   + +  YF+ EV PHV DA+ D   I
Sbjct: 578 PYARVWGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAWADGAKI 637

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                   R  +EINFNR+FY+Y P R L +ID+++K +E +I  LL E+  
Sbjct: 638 --------RSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 681


>gi|315180943|gb|ADT87857.1| type I restriction-modification system, M subunit/N-6
           Adenine-specific DNA methylase [Vibrio furnissii NCTC
           11218]
          Length = 789

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/526 (44%), Positives = 320/526 (60%), Gaps = 63/526 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS----------AVREKYLA 61
           A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEP++           A+ EK ++
Sbjct: 10  AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKESLLAEIPKVEALNEKLVS 69

Query: 62  FGGSNID------------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
            G   +D             E+       SF+NTS  +L  +G +N + NLE Y+ SFS 
Sbjct: 70  SGKDPLDENQREKMLLRATFEAKDSTKNLSFFNTSPMNLGKMGQSNIKANLEKYVQSFSK 129

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           +A+ IFE F F   +  LE A LLYK+ K F+  +L P  + +  M  ++E LIRRF   
Sbjct: 130 DAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPSNISNYEMGLVFEELIRRFAES 189

Query: 170 VSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            +E A +  TPRD+V L T+L+ ++ D+AL KE  G+IRT+YDPT GTGGFL+  M +V 
Sbjct: 190 SNETAGEHFTPRDIVRLTTSLVFMEDDEALTKE--GIIRTIYDPTAGTGGFLSSGMEYVY 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +         ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D   
Sbjct: 248 ELNPK----AVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLP 296

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +F Y LSNPPFG  W+K +  ++ EH + G  GRFG GLP++SDGS+LFLMHL +K+ 
Sbjct: 297 ADQFDYMLSNPPFGVDWKKIEGEIKDEHEQKGFDGRFGAGLPRVSDGSLLFLMHLISKMR 356

Query: 348 -LPP----------NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            + P            GGR  I+L+ SPLF G AGSGESEIRR++LE DL++AIVALP D
Sbjct: 357 PISPIKDKNVDNQVTDGGRIGIILNGSPLFTGSAGSGESEIRRYILEADLLDAIVALPND 416

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQI--- 452
           +F+ T IATY+W+LSN+K  ER+GKVQLIN  +L + +R   G KR  + DD+ R I   
Sbjct: 417 MFYNTGIATYVWVLSNKKAPERKGKVQLINGANLGSKMRKSLGSKRHFLTDDEIRAITKN 476

Query: 453 ------LDIYVS---RENGK--FSRMLDYRTFGYRRIKVLRPLRMS 487
                 +D   S    E+GK   S++ D   FGYRR+ + RPLR+S
Sbjct: 477 FGEFAEVDTATSLKESESGKPFASKIFDTHEFGYRRLTIERPLRLS 522



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 62/98 (63%), Gaps = 6/98 (6%)

Query: 580 EWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           E+  D +L + ENVP   S      I+ YF REV PHV DA+I+    D+KD EIG VGY
Sbjct: 690 EFQQDGDLRDNENVPLDPSVSTSTLIESYFKREVQPHVADAWINADKRDDKDNEIGVVGY 749

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EI FNR FY YQP R L+ IDA+L  V A I  LL+E+
Sbjct: 750 EIPFNRHFYVYQPPRALEAIDADLDAVSADIMKLLQEV 787


>gi|315656948|ref|ZP_07909833.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492340|gb|EFU81946.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 682

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/703 (36%), Positives = 375/703 (53%), Gaps = 63/703 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS---AVREKYLA 61
           T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T++   A+R++   
Sbjct: 3   TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGV 62

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119
              + +    + +  GY F+N S ++L TL +   N   NL SY+  FS NA+ + + +D
Sbjct: 63  --PAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYD 120

Query: 120 FSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F + I RL+++ LLY+I   F+   ++  P  V +  M +I+E LIRRF    +E A + 
Sbjct: 121 FYTVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEH 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   +L DPD     E PG + +LYDP  GTGG L+ A+    +     +I 
Sbjct: 181 FTPREVIQLMVEVLFDPDMNAICE-PGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE 239

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L 
Sbjct: 240 V----YGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLC 288

Query: 298 NPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKL------ELPP 350
           NPPFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K+      ++  
Sbjct: 289 NPPFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQN 348

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R  IV + SPLF G AG GES IRRW+LEND +EAI+ALP  +F+ T I TY+W+L
Sbjct: 349 APGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVL 408

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           SNRK   R+ KVQLI+AT L+  +R   G+KR+ + +D   QI  IY      + S++ D
Sbjct: 409 SNRKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFD 468

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-----------------Q 512
              FG+  + V RPLR++F      + RL     ++ L+                    Q
Sbjct: 469 TCEFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQ 528

Query: 513 SFWLDILKPM-MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
              +D L+ +  QQ+    W       ++  +  K   +      + A + A G  DP A
Sbjct: 529 QAIIDTLETLDGQQV----WKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTA 584

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           D   D  G   PD  L + E +P  E I  Y  REV P+  DAY+D       DK   ++
Sbjct: 585 DICRDAKGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVD------PDKT--KI 636

Query: 632 GYEINFNRFFYQYQ----PSRKLQDIDAELKGVEAQIATLLEE 670
           GYEI F R+FYQY+    P++ L +I      ++A IA L  E
Sbjct: 637 GYEIPFTRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 679


>gi|150017996|ref|YP_001310250.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052]
 gi|149904461|gb|ABR35294.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052]
          Length = 673

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/697 (34%), Positives = 389/697 (55%), Gaps = 66/697 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFG----- 63
           +  +F+W  AE L G +K  D+ KV++P  ++RR +C L+   +  +++ Y  +      
Sbjct: 6   NFVSFLWNIAESLRGTYKEEDYRKVMIPMIVVRRFDCLLDDYDKEIIKKVYSNYDYMPEE 65

Query: 64  ------------GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSD 109
                         NIDL+         FYN S+++   L   S N + N E Y+  FS+
Sbjct: 66  EIDEIVIADLKENHNIDLQ---------FYNVSDFTWKKLLDDSENIKANFEEYLNGFSN 116

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N K I   F+F + I +L+K   LY + +  S ++LH + + +  M  IYE ++RRF +E
Sbjct: 117 NVKEIIGKFNFKAEITQLDKKNKLYAVLQKMSEVDLHINKISNNKMGYIYEEMLRRF-TE 175

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            S   E + TPR+V+ L   +L    ++   E  G + ++ D  CGTGG L+ A  +V +
Sbjct: 176 NSAAGEQY-TPREVIKLCMEMLFLGKESFITEE-GKVISIADFCCGTGGMLSIAEAYVEN 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    I+  +GQEL  E+ A+C A ML++    D       NI+ G+TL++D F+G
Sbjct: 234 LNEK----AIVDVYGQELLDESFAICQADMLMKGQNPD-------NIRLGNTLTEDRFSG 282

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +   + +SNPPFG  W+ ++  V+ E   G  GRFG G P++SDGS+LFL ++ +K+   
Sbjct: 283 EHMRFLISNPPFGVTWKDEEKKVKDEADLGFDGRFGAGTPRVSDGSLLFLQNMISKM-YD 341

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G R AI+ + SPLF G AGSGES IRRW++END++E I+ALPTD+F+ T IATY+W+
Sbjct: 342 DEEGSRIAIIFNGSPLFTGDAGSGESNIRRWIIENDMLEGIIALPTDMFYNTGIATYIWV 401

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           ++NRKTE R+GK+QL+NATD +  +R   G KR+ I+ +Q ++I  IY S E  +  R+ 
Sbjct: 402 ITNRKTENRKGKIQLVNATDFYVPMRKSLGNKRKEISTEQIQEIKSIYESFEPSENCRIF 461

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS----------PLHQSFWLDI 518
           D + FGYR+I + RPL++SF +D+  +++++    +  L+             ++   ++
Sbjct: 462 DNKEFGYRKITIERPLKLSFKVDEEAISKVKETTQFINLAVSKKKDEAAKASEEALGKEV 521

Query: 519 LKPMMQQIYPYGWAESFV--KESIK--SNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
              +++ +  +   E ++  +E IK   ++AK   +    + + A  ++ G ++  AD  
Sbjct: 522 QNKIIEMLQSFDSNEVYLNREEFIKKVKSKAKNYDLTLGAALLKAIWSSIGERNEDADIC 581

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
            D  G    D++L + E++   E I  YF REV PHVPDAY+D       +     +GYE
Sbjct: 582 KDSKGNPESDSSLKDTESIQLKEDINAYFEREVKPHVPDAYMD-------ETTFSNIGYE 634

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           I F R FY+Y+  R   DI  E++ +E +IA  ++++
Sbjct: 635 IPFTRHFYKYEKLRAFSDIMKEVEDLEQEIAVEIKKV 671


>gi|78773871|gb|ABB51221.1| type I RM system M subunit [Arthrospira platensis]
          Length = 688

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 255/712 (35%), Positives = 387/712 (54%), Gaps = 81/712 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY     
Sbjct: 15  TVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQCKD 74

Query: 65  SNID--LESFV-KVAG--YSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFED 117
              D  L+S + K AG  + F+N SE++   L     N   +L +YI SFS N + IFE 
Sbjct: 75  RFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIFER 134

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A D 
Sbjct: 135 FEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAGDH 194

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   +L DPDD +  +   +I  L DP CGTGG L+++ N++ +     +  
Sbjct: 195 FTPREVIRLMVDILFDPDDDILTKP--VICRLLDPACGTGGMLSESQNYLRENNKEAQ-- 250

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y L+
Sbjct: 251 --LWVFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYFLA 301

Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE-LPPNG--- 352
           NPPFG  W+K +  V++EH K G  GRFG GLP+++DGS+LFL H  +K E   P+    
Sbjct: 302 NPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSDKK 361

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP  +F+ T I TY+WI++N
Sbjct: 362 GSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIVTN 421

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y +    + S++    
Sbjct: 422 RKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFKNE 481

Query: 472 TFGYRRIKVLRPLRMSFILDK-------TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            FGY R+ + RPLR+ + +D         G+  L  D+               I K + +
Sbjct: 482 DFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPHLLEDVQ-------------AIDKQLGR 528

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT--------- 575
           +  P  W E    + + ++  K    +  K+    F + F  ++P A+PV          
Sbjct: 529 EPRP-DWNEF---DRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDE 584

Query: 576 ---------DVNGEWI-----PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
                     V G+ I     PD+ L ++ENV   + +  YF+ EV PHV DA+ D   I
Sbjct: 585 PYARVWGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAWADGAKI 644

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                   R  +EINFNR+FY+Y P R L +ID+++K +E +I  LL E+  
Sbjct: 645 --------RSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 688


>gi|260578141|ref|ZP_05846062.1| type I restriction-modification system, M subunit N-6
           adenine-specific DNA methylase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603780|gb|EEW17036.1| type I restriction-modification system, M subunit N-6
           adenine-specific DNA methylase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 689

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/700 (36%), Positives = 377/700 (53%), Gaps = 56/700 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T    S  + IW  AE L GD+K  ++G V+LPFT+L RL+  L  T+ AV +       
Sbjct: 9   TEKPTSHVSLIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKATSVP 68

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           + I    + K  GY F+NTS ++L TL   + N   NL  Y+ +F+  A+ + E ++F +
Sbjct: 69  NKIKELRYAKETGYPFWNTSNFTLKTLLDDADNLEQNLTYYVQAFAPAAREVMEAYNFYN 128

Query: 123 TIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            I RL+K+ LLY + K F+   + LHPD V +  M  I+E LIRRF    +E A +  TP
Sbjct: 129 VIERLDKSDLLYHVLKEFTSAKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTP 188

Query: 181 RDVVHLATALLLDPDDALFKE-SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           R+V+ L   LL +P++ + +  + G + +LYDP  GTGG L+ A  HV D     +    
Sbjct: 189 REVISLMVNLLFNPEEDINRLCADGAMASLYDPGVGTGGMLSTAAQHVNDLNESAR---- 244

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +GQEL P+T+AV  + ++I+        +  + I  G++L+ D   G RF Y L NP
Sbjct: 245 LEVYGQELNPQTYAVAKSDIMIKG-------ERQERIYFGNSLTNDKTAGMRFDYMLCNP 297

Query: 300 PFGKKWEKDKDAV--EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL------ELPPN 351
           PFG  W+K  D +  E EHK G  GRFG G P++SDGS LFL H+ +K+      +L   
Sbjct: 298 PFGVNWKKYADPILDEAEHK-GYQGRFGAGTPRVSDGSFLFLQHMISKMKPYDPMDLVNA 356

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV + SPLF G AG GESEIRRW+LEND +EAI+ALP  +F+ T I TY+W+LS
Sbjct: 357 AGTRIGIVFNGSPLFTGGAGQGESEIRRWILENDWLEAIIALPDQMFYNTGILTYIWVLS 416

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           N+K   R+ KVQLI+AT  +  +R   G+KR+ + +     I  IY + +  + SR+ + 
Sbjct: 417 NKKERHRKNKVQLIDATQYFQRMRKPLGEKRKELTETNIADITRIYGAFQETEESRIFET 476

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLE-----ADITW-RKLSPLHQSFWLDILKPMMQ 524
             F Y  + V RPLR+SF      +  L+      D+   RK +   ++  +D  K +  
Sbjct: 477 EDFAYHEVVVERPLRLSFQATPDAIESLKQTKPFTDLAMSRKRTEPARTEEIDAGKRVQN 536

Query: 525 QIYPYGWAESFVKESIKSNE-------AKTLKVKASKSFIVAF---INAFGRKDPRADPV 574
            I      E+   E +  N         +++K +  K  I A    +   G K+P AD  
Sbjct: 537 AI--IATLEALDAERVYLNRDEFTDLIRESIKKRGEKIGIAALRKIVAGLGTKNPDADIC 594

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
            D  G   PD +L + E +P+ E I+ YF REV P+ PDA+ID       DK   ++GYE
Sbjct: 595 MDTKGNPEPDADLRDTEQIPFREDIEAYFQREVIPYAPDAWID------HDK--TKIGYE 646

Query: 635 INFNRFFYQYQ----PSRKLQDIDAELKGVEAQIATLLEE 670
           I F R+FY+Y+    P   L +I      ++A I  L  E
Sbjct: 647 IPFTRYFYKYEELGNPVETLAEIQTLSASIQADITKLFSE 686


>gi|294637840|ref|ZP_06716111.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Edwardsiella tarda ATCC
           23685]
 gi|291089014|gb|EFE21575.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Edwardsiella tarda ATCC
           23685]
          Length = 798

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 235/545 (43%), Positives = 323/545 (59%), Gaps = 66/545 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T F+ +AA    FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY  
Sbjct: 16  TNFSQTAA----FIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYDE 71

Query: 62  FGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              S +  E+     ++ +G SF+NTS+  L  +G  + + NLE+YI +FS +A+ IFE 
Sbjct: 72  LKTSPLPEEAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLENYIQAFSPDAREIFEH 131

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A + 
Sbjct: 132 FKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGEH 191

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V      H++ 
Sbjct: 192 FTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYV------HELN 244

Query: 238 P--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           P  ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y 
Sbjct: 245 PNAVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPQDQFDYM 297

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--- 351
           LSNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N   
Sbjct: 298 LSNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDG 357

Query: 352 ---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W
Sbjct: 358 SVSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVW 417

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY----------- 456
           ILSN+K  ER+GKVQLI+AT+L   +R   G KR ++ DD  + I   +           
Sbjct: 418 ILSNQKAAERKGKVQLIDATNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVVETTTL 477

Query: 457 ---------------------VSRENGK--FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
                                   E  K   S++ +   FGYRR+ + RPLR+S  +   
Sbjct: 478 EELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDE 537

Query: 494 GLARL 498
            +A L
Sbjct: 538 AIATL 542



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 86/160 (53%), Gaps = 29/160 (18%)

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG- 579
           +KE+IK+   K L  K +K FI    +A   K+P A+PV                +  G 
Sbjct: 642 LKEAIKTAGVK-LDAKENKQFI----DAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGK 696

Query: 580 --EWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
             E+  D  L + ENVP   +      I++Y   EV PHV DA+I+    D KD E+G V
Sbjct: 697 VVEFEQDGELRDNENVPLNPALSTSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIV 756

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI FNR FY YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 757 GYEIPFNRHFYVYQPPRPLEEIDADLDAVSAEIMKLLQEV 796


>gi|260557401|ref|ZP_05829616.1| type I restriction-modification system, M subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|260409027|gb|EEX02330.1| type I restriction-modification system, M subunit [Acinetobacter
           baumannii ATCC 19606]
          Length = 761

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/516 (43%), Positives = 324/516 (62%), Gaps = 41/516 (7%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + +A+FIW  A  L GDFK + +G++ILPFTLLRRLEC LE +++AV  ++      N+ 
Sbjct: 7   SQIASFIWSVANLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHEKVSKLNLP 66

Query: 69  LESFVKVA-----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            E+  K+      G +F+NTS   LS +G ++ + NL +Y+ SFS +A+ IFE F+F   
Sbjct: 67  EEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIFEYFNFIEF 126

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L+ A LLYK+ + F+  +L P  V +  M  ++E LIRRF    +E A +  TPRD+
Sbjct: 127 AGLLDDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNETAGEHFTPRDI 186

Query: 184 VHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--IL 240
           V L TAL+ ++ DD L K+  G+IRT+YDPT GTGGFL+  M ++      H++ P  ++
Sbjct: 187 VRLTTALVFMEDDDVLTKD--GIIRTIYDPTAGTGGFLSSGMEYL------HELNPNAVM 238

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y LSNPP
Sbjct: 239 RAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLAVDQFDYMLSNPP 291

Query: 301 FGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGGRAA 357
           FG  W+K +  ++ EH++ G  GRFG GLP++SDGS+LFLMHL +K+        G R  
Sbjct: 292 FGVDWKKIEQDIKDEHEHKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSSESGSRIG 351

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN+K  E
Sbjct: 352 IILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSNKKAAE 411

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY--------------VSRENG 462
           R+GKVQLINA++L T +R   G KR  + +++   I   Y                ++  
Sbjct: 412 RKGKVQLINASNLSTKMRKSLGSKRNYLTENEIATITQNYGAFVAVDTLANDGETEQQKP 471

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
             S++ D   FGYRR+ + RPLR+S  +  + +A L
Sbjct: 472 FASKIFDNHEFGYRRVTIERPLRLSAQITDSAIAAL 507



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 29/172 (16%)

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD------- 576
           +Q   +   +  +K+++K  + K L  K  K  +    +A   K+P A+PV +       
Sbjct: 593 EQFDDFNQFDEVLKKALKQADIK-LDAKEKKQLL----DAITWKNPEAEPVINKVLKQAE 647

Query: 577 --------VNG---EWIPDTNLTEYEN------VPYLESIQDYFVREVSPHVPDAYIDKI 619
                     G   E++ D +L + EN      V   E I+DYF REV PHV DA+I+  
Sbjct: 648 NPLYGQFSYQGKVVEFVQDGDLRDAENIALNPKVSTTELIEDYFKREVQPHVADAWINAD 707

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             DEKD EIG VGYEI FNR FY Y+P R L +IDA+L  V A+I  LL+E+
Sbjct: 708 KRDEKDGEIGIVGYEIPFNRHFYVYEPPRDLSEIDADLDAVSAEIMQLLQEV 759


>gi|227496835|ref|ZP_03927103.1| type I restriction-modification system methyltransferase subunit
           [Actinomyces urogenitalis DSM 15434]
 gi|226833668|gb|EEH66051.1| type I restriction-modification system methyltransferase subunit
           [Actinomyces urogenitalis DSM 15434]
          Length = 687

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 254/703 (36%), Positives = 374/703 (53%), Gaps = 63/703 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS---AVREKYLA 61
           T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T++   A+R++   
Sbjct: 8   TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGV 67

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119
              + +    + +  GY F+N S ++L TL +   N   NL SY+  FS NA+ + + +D
Sbjct: 68  --PAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYD 125

Query: 120 FSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F + I RL+++ LLY+I   F+   ++  P  V +  M +I+E LIRRF    +E A + 
Sbjct: 126 FYTVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   +L  PD     E PG + +LYDP  GTGG L+ A+    +     +I 
Sbjct: 186 FTPREVIQLMVEVLFGPDMNAICE-PGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE 244

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L 
Sbjct: 245 V----YGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLC 293

Query: 298 NPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKL------ELPP 350
           NPPFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K+      ++  
Sbjct: 294 NPPFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQN 353

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R  IV + SPLF G AG GES IRRW+LEND +EAI+ALP  +F+ T I TY+W+L
Sbjct: 354 APGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVL 413

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           SNRK   R+ KVQLI+AT L+  +R   G+KR+ + +D   QI  IY      + S++ D
Sbjct: 414 SNRKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFD 473

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-----------------Q 512
              FG+  + V RPLR++F      + RL     ++ L+                    Q
Sbjct: 474 TCEFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQ 533

Query: 513 SFWLDILKPM-MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
              +D L+ +  QQ+    W       ++  +  K   +      + A + A G  DP A
Sbjct: 534 QAIIDTLETLDGQQV----WKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTA 589

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           D   D  G   PD  L + E +P  E I  Y  REV P+  DAY+D       DK   ++
Sbjct: 590 DICRDAKGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVD------PDKT--KI 641

Query: 632 GYEINFNRFFYQYQ----PSRKLQDIDAELKGVEAQIATLLEE 670
           GYEI F R+FYQY+    P++ L +I      ++A IA L  E
Sbjct: 642 GYEIPFTRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 684


>gi|188992675|ref|YP_001904685.1| Type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734435|emb|CAP52645.1| Type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. campestris]
          Length = 728

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 253/739 (34%), Positives = 385/739 (52%), Gaps = 103/739 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++      +   +
Sbjct: 9   LKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLLAKDTPEQ 68

Query: 71  SFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ IFE F F
Sbjct: 69  AMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARRIFERFKF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S  I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E A D  TP
Sbjct: 129 SDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDHFTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPP 238
           R+V+ L   L+   +  ++K  PG++R++YDPTCGTGG L+++   +   +  +H  +  
Sbjct: 189 REVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNAAAHLHL-- 244

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHY 294
               +GQE   E+ A+C + MLI+  ++        NI +G TL    +KD F G+RFHY
Sbjct: 245 ----YGQEYNDESWAICCSDMLIKDEDT-------ANIVKGDTLGDGKTKDGFEGERFHY 293

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL----- 348
            L+NPPFG +W+  K  VE EH N G  GRFG GLP I+DGS+LFL H+  K+       
Sbjct: 294 MLANPPFGVEWKDQKTVVENEHANHGFTGRFGAGLPAINDGSLLFLQHMIAKMHPYDGGN 353

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
           P   G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP  LF+ T I TY+W
Sbjct: 354 PDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGIYTYVW 413

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK---- 463
           +++NRK EERRG VQLI+ T  +  ++     KR  I+D+Q   +  +Y +  +G+    
Sbjct: 414 LVTNRKPEERRGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDGESADV 473

Query: 464 -------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                         SR+ + R FG+ ++ V RPLRM+F      +ARL+    +  L+  
Sbjct: 474 VIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPERIARLDEQSAFANLATS 533

Query: 511 H---------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                           Q+    I + + +      + +  + E+     A  + +K    
Sbjct: 534 KKRKDEKVAQQEIAEGQAIQRSIRELLAELAVKGLYGDRELFEADLEKAANKVGIKLPAP 593

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--------------------- 594
              A  +A G +DP+A+   D  G   PD+ L + EN+P                     
Sbjct: 594 IRKAIFSALGERDPQAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPDKPNDD 653

Query: 595 ----YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
               + ++I DY  REV PHV DA++        D    +VGYEI  NR FY Y+P R L
Sbjct: 654 LIEAFRDTIDDYMRREVLPHVADAWV--------DYSKTKVGYEIPINRHFYVYKPPRPL 705

Query: 651 QDIDAELKGVEAQIATLLE 669
             I+A+++ +E +IA LL+
Sbjct: 706 PQIEADIRQLEGEIADLLK 724


>gi|290512140|ref|ZP_06551507.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55]
 gi|289775135|gb|EFD83136.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55]
          Length = 795

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/545 (42%), Positives = 324/545 (59%), Gaps = 66/545 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T F+ +AA    FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY  
Sbjct: 13  TNFSQTAA----FIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYDE 68

Query: 62  FGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              S +  ++     ++ +  SF+NTS+  L  +G  + + NLESY+ +FS +A+ IFE 
Sbjct: 69  LKTSPLPEDAKEKFLLRASTLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFEH 128

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A + 
Sbjct: 129 FKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGEH 188

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPRD+V L T+L+   DD    + PG+IRT+YDPT GTGGFL+  M +V      H++ 
Sbjct: 189 FTPRDIVRLTTSLVFMEDDEALTQ-PGIIRTIYDPTAGTGGFLSSGMEYV------HELN 241

Query: 238 P--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           P  ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y 
Sbjct: 242 PNAVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPLDQFDYM 294

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--- 351
           LSNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N   
Sbjct: 295 LSNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDG 354

Query: 352 ---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W
Sbjct: 355 TVSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVW 414

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRR---------QILDIYVS 458
           ILSN+K  ER+GKVQLI+ T+L   +R   G KR ++ DD  +         +++D    
Sbjct: 415 ILSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGDDDIKLITKTFGDFEVVDATTL 474

Query: 459 RENGK-------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            E G                           S++ +   FGYRR+ + RPLR+S  +   
Sbjct: 475 EELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDE 534

Query: 494 GLARL 498
            +A L
Sbjct: 535 AIATL 539



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 78/150 (52%), Gaps = 24/150 (16%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG---EWIPDTNL 587
           KT  VK        FI+A   K+P A+PV                +  G   E+  D  L
Sbjct: 644 KTAGVKLDAKENKQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGEL 703

Query: 588 TEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            + ENVP   +      I++YF  EV PHV DA+I+    D KD E+G VGYEI FNR F
Sbjct: 704 RDNENVPLNPTVSTSDLIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHF 763

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y YQP R L +IDA+L  V A+I  LL+E+
Sbjct: 764 YVYQPPRPLSEIDADLDAVSAEIMKLLQEV 793


>gi|283787022|ref|YP_003366887.1| Type I restriction-modification system, methylase (M) subunit
           [Citrobacter rodentium ICC168]
 gi|282950476|emb|CBG90139.1| putative Type I restriction-modification system, methylase (M)
           subunit [Citrobacter rodentium ICC168]
          Length = 786

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/534 (43%), Positives = 320/534 (59%), Gaps = 66/534 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T F+ +AA    FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY  
Sbjct: 4   TNFSQTAA----FIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYDE 59

Query: 62  FGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              S +  ++     ++ +G SF+NTS+  L  +G  + + NLESY+ +FS +A+ IFE 
Sbjct: 60  LKTSPLPEDAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFEH 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A + 
Sbjct: 120 FKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGEH 179

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V      H++ 
Sbjct: 180 FTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSAGMEYV------HELN 232

Query: 238 P--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           P  ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y 
Sbjct: 233 PNAVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPQDQFDYM 285

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--- 351
           LSNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N   
Sbjct: 286 LSNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDG 345

Query: 352 ---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W
Sbjct: 346 TVSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVW 405

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRR---------QILDIYVS 458
           ILSN+K  ER+GKVQLI+ T+L   +R   G KR ++ +D  +         +++D    
Sbjct: 406 ILSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFKVVDATTL 465

Query: 459 RENGK-------------------------FSRMLDYRTFGYRRIKVLRPLRMS 487
            E G                           S++ +   FGYRR+ + RPLR+S
Sbjct: 466 EELGLEKAAEQKSSRGRQPATAKTEATKTFASKIFNSTDFGYRRLTIERPLRLS 519



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 79/150 (52%), Gaps = 24/150 (16%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG---EWIPDTNL 587
           KT  VK        FI+A   K+P A+PV                +  G   E+  D  L
Sbjct: 635 KTAGVKLDAKENKQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGEL 694

Query: 588 TEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            + ENVP   +      I++YF  EV PHV DA+I+    D KD E+G VGYEI FNR F
Sbjct: 695 RDNENVPLNPAVSTSDLIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHF 754

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 755 YVYQPPRPLEEIDADLDAVSAEIMKLLQEV 784


>gi|78046747|ref|YP_362922.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035177|emb|CAJ22822.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 728

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 258/739 (34%), Positives = 381/739 (51%), Gaps = 103/739 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFGGSNI 67
           L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV    EK LA      
Sbjct: 9   LKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKDAVLKQHEKLLAKDTPKP 68

Query: 68  DLESFVKVAG-----YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            +   +  A      +  YN S Y+   L   + N   NL +YI  FS  A+ IFE F F
Sbjct: 69  AMHRLLGKAADPNRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARRIFERFKF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E A D  TP
Sbjct: 129 GDQIDKLDASNRLFTIIKAMASIDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDHFTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPP 238
           R+V+ L   L+   +  +++  PG++R++YDPTCGTGG L+++   +   +  +H  +  
Sbjct: 189 REVIRLMANLVYTGEQEVYR--PGIVRSIYDPTCGTGGMLSESEKFILGQNAAAHLHL-- 244

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHY 294
               HGQE   E+ A+C + MLI+  ++        NI +G TL    +KD F G+RFHY
Sbjct: 245 ----HGQEYNDESWAICCSDMLIKDEDT-------ANIVKGDTLGDGKTKDGFEGERFHY 293

Query: 295 CLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE-----L 348
            L+NPPFG +W+  K  VE EH K G  GRFG GLP I+DGS+LFL H+  K+       
Sbjct: 294 MLANPPFGVEWKDQKTVVENEHAKLGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYDEGH 353

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
           P   G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP  LF+ T I TY+W
Sbjct: 354 PDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGIYTYVW 413

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVS--------- 458
           +++NRK EER+G VQLI+ T  +  ++     KR  I+D+Q   +  +Y +         
Sbjct: 414 LVTNRKPEERQGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDGESAEV 473

Query: 459 --------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                    EN   SR+ + R  G+ ++ V RPLRM+F      +ARL+A   +  L+  
Sbjct: 474 VIDHKTGETENRVVSRVFENRELGFLKVTVERPLRMNFEATPGRVARLDAQSAFANLATS 533

Query: 511 HQ--------------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKS 555
            +                    ++ ++ ++   G + +  V E+     AK   +K    
Sbjct: 534 KKRKDEKAARQEIAEGQAMQQCIRELLVRLAGKGLYMDREVFEADLEKVAKKAGIKLPAP 593

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--------------------- 594
              A   A G +DP A+   D  G   PD+ L + EN+P                     
Sbjct: 594 IRKAIFAALGERDPHAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPDKPNDA 653

Query: 595 ----YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
               + ++I DY  REV PHV DA++        D    +VGYEI  NR FY YQP R L
Sbjct: 654 LVEAFRDTIDDYMRREVLPHVADAWV--------DYSKTKVGYEIPINRHFYVYQPPRPL 705

Query: 651 QDIDAELKGVEAQIATLLE 669
             I+A+++ +E +IA LL+
Sbjct: 706 PQIEADIRQLEGEIADLLK 724


>gi|288986937|ref|YP_003456900.1| N-6 DNA methylase [Allochromatium vinosum DSM 180]
 gi|288898316|gb|ADC64150.1| N-6 DNA methylase [Allochromatium vinosum DSM 180]
          Length = 580

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 316/489 (64%), Gaps = 22/489 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L+  IW  A+ L GD+K +D+GKVILPFT+LRRL+C LE T+ AV  +  A     
Sbjct: 2   NQTNLSALIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLESTKDAVLAEEKAKRQMG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E F+ +V+G SFYN S   +  L     + + NL SY+  FSD+ + IFE FD  + 
Sbjct: 62  VNPELFLLRVSGQSFYNVSPLDMKKLLGDPDHIKANLLSYLHGFSDDVRDIFEQFDVQTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL K  LLY++ + F+ ++LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 IDRLAKTNLLYQVTERFAQVDLHPNRVSNSQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DDA+  + PG++RTLYDPT GTGG L+ A  ++ +    H     L   
Sbjct: 182 IRLMVNLLFIEDDAVLAK-PGVVRTLYDPTAGTGGMLSVAGEYLEE----HNPEARLTMF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+       +D++ NI  G+T S+D    + F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKG------QDVA-NIVFGNTFSEDGHPQRTFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + A+ +EH+  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKAIRQEHETLGFSGRFGPGLPRVSDGSLLFLLHLISKMRPAIDGGSRLGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WILSNRK E RRG V
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGISTYVWILSNRKPEHRRGLV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY-VSRE--NGK--FSRMLDYRTFGYR 476
           QLI+A+ LW  +R   G KR+ ++D    +I  ++   RE  +GK   SR+     FGYR
Sbjct: 410 QLIDASGLWQKMRKSLGSKRKELSDAHIAEITRLFGECREAYDGKKPISRLFKNSDFGYR 469

Query: 477 RIKVLRPLR 485
            I V RPLR
Sbjct: 470 TITVERPLR 478



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 8/95 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+  PDT+  + ENVP  E ++ YF REV PH  DA+ID       DK   +VGYEI FN
Sbjct: 494 GKPQPDTSRRDTENVPLAEDVETYFQREVLPHAQDAWIDH------DKT--KVGYEIPFN 545

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           R FY ++P R L DIDA+LK    +I T++E ++ 
Sbjct: 546 RHFYVFEPPRPLADIDADLKRCTDRILTMIEGLSA 580


>gi|331650480|ref|ZP_08351552.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli M605]
 gi|331040874|gb|EGI13032.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli M605]
          Length = 781

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/539 (43%), Positives = 323/539 (59%), Gaps = 69/539 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + +A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV  +        + 
Sbjct: 7   SQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETTKDAVITEAKKVKAMKLP 66

Query: 69  LESFVKVA-----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            E+  K+      G +F+N S   LS +G    ++NLE+YI SFS +A+ IFE F FS  
Sbjct: 67  EEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHFKFSEF 126

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +L  A LL+K+ + F+  +L+P+ V +  M  ++E LIRRF    +E A +  TPRD+
Sbjct: 127 VGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHFTPRDI 186

Query: 184 VHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILV 241
           V+L T+L+  D DDAL K+  G+IRT+YDPT GTGGFL+  M  V     H + P  ++ 
Sbjct: 187 VNLTTSLVFFDDDDALNKD--GIIRTIYDPTAGTGGFLSSGMEFV-----HQQNPNAVMR 239

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A MLI+       +D+S  I+ G+TLS D    ++F Y LSNPPF
Sbjct: 240 AFGQELNPESYAICKADMLIKG------QDVSL-IKLGNTLSNDQLPAEKFDYMLSNPPF 292

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    +GGGR  I+L
Sbjct: 293 GVDWKKIETDINDEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIGIIL 352

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+WILSN+K  ER+G
Sbjct: 353 NGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWILSNKKAPERKG 412

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDI-YVSRENGKF-------------- 464
           KVQLI+ ++L   +R   G KR I+ ++      DI  ++R  G F              
Sbjct: 413 KVQLIDGSNLCGKMRKSLGSKRNILGEE------DIGLITRTFGDFEPVATTTLAALGLE 466

Query: 465 -------------------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                                    S++     FGYRRI V RPLR+S  +    +A L
Sbjct: 467 KAPEQKSSRGRQPATTKTEAAKTFASKVFHSTDFGYRRITVERPLRLSAQISDHAIATL 525



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 29/160 (18%)

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG- 579
           +KE++++   K L  K +K FI    +A  RK+P A+PV                + NG 
Sbjct: 625 LKEALRTAGVK-LDAKENKQFI----DAITRKNPDAEPVVSKVLKEAAQPLYGACEYNGK 679

Query: 580 --EWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
             E+ PD +L + ENVP        E I+ YF  EV PHV DA+I+    D KD +IG V
Sbjct: 680 VVEFEPDGDLRDNENVPLNPAVSTSELIEGYFKAEVLPHVADAWINADKRDAKDGDIGIV 739

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI FNR FY YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 740 GYEIPFNRHFYVYQPPRPLEEIDADLDAVSAEIMKLLQEV 779


>gi|331666003|ref|ZP_08366897.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli TA143]
 gi|331057054|gb|EGI29048.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli TA143]
          Length = 781

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/540 (42%), Positives = 324/540 (60%), Gaps = 71/540 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + +A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  +        + 
Sbjct: 7   SQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETSKDAVIAEAQKVKAMKLP 66

Query: 69  LESFVKVA-----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            E+  K+      G +F+N S   LS +G    ++NLE+YI SFS +A+ IFE F FS  
Sbjct: 67  EEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHFKFSEF 126

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +L  A LL+K+ + F+  +L+P+ V +  M  ++E LIRRF    +E A +  TPRD+
Sbjct: 127 VGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHFTPRDI 186

Query: 184 VHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--IL 240
           V+L T+L+  D DDAL K+  G+IRT+YDPT GTGGFL+  M +V      HK  P  ++
Sbjct: 187 VNLTTSLVFFDDDDALNKD--GIIRTIYDPTAGTGGFLSSGMEYV------HKQNPNAVM 238

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLI+       +D+S  I+ G+TLS D    ++F Y LSNPP
Sbjct: 239 RAFGQELNPESYAICKADMLIKG------QDVSL-IKLGNTLSNDQLPAEKFDYMLSNPP 291

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG  W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    +GGGR  I+
Sbjct: 292 FGVDWKKIETDINNEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIGII 351

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+W+LSN+K  ER+
Sbjct: 352 LNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWVLSNKKAPERK 411

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDI-YVSRENGKF------------- 464
           GKVQLI+ ++L   +R   G KR I+ ++      DI  ++R  G F             
Sbjct: 412 GKVQLIDGSNLCGKMRKSLGSKRNILGEE------DIGLITRTFGDFEPVATTTLAALGL 465

Query: 465 --------------------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                                     S++     FGYRRI V RPLR+S  +    +A L
Sbjct: 466 EKAPEQKSSRGRQPATTKTEAAKTFASKVFHSTEFGYRRITVERPLRLSAQISDDAIATL 525



 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 89/160 (55%), Gaps = 29/160 (18%)

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG- 579
           +KE++++   K L  K +K FI    +A  RK+P A+PV                + +G 
Sbjct: 625 LKEALRTAGVK-LDAKENKQFI----DAITRKNPDAEPVISKVLKEAPQPLYGAFEYHGK 679

Query: 580 --EWIPDTNLTEYENVPYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
             E+  D +L + ENVP        E I+DYF  EV PHV DA+I+    D KD +IG V
Sbjct: 680 VVEFESDGDLRDNENVPLNPAVSTNELIEDYFKAEVLPHVADAWINADKRDAKDGDIGIV 739

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI FNR FY Y P R L++IDA+L  V A+I  LL+E+
Sbjct: 740 GYEIPFNRHFYVYTPPRPLEEIDADLDAVSAEIMKLLQEV 779


>gi|238918473|ref|YP_002931987.1| hypothetical protein NT01EI_0518 [Edwardsiella ictaluri 93-146]
 gi|238868041|gb|ACR67752.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 786

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/545 (42%), Positives = 322/545 (59%), Gaps = 66/545 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T F+ +AA    FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  ++ AV  KY  
Sbjct: 4   TNFSQTAA----FIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAESKDAVVAKYDE 59

Query: 62  FGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              S +  E+     ++ +G +F+NTS+  L  +G  + + NLE+Y+ +FS +A+ IFE 
Sbjct: 60  LKTSPLPEEAKQKFLLRASGLAFFNTSKMDLGKMGQNDIKANLENYVQAFSPDAREIFEH 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A + 
Sbjct: 120 FKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGEH 179

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V      H++ 
Sbjct: 180 FTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYV------HELN 232

Query: 238 P--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           P  ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y 
Sbjct: 233 PNAVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPQDQFDYM 285

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--- 351
           LSNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N   
Sbjct: 286 LSNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDG 345

Query: 352 ---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W
Sbjct: 346 SVSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVW 405

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY----------- 456
           ILSN+K  ER+GKVQLI+ ++L   +R   G KR ++ DD  + I   +           
Sbjct: 406 ILSNQKAAERKGKVQLIDGSNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVMNATTL 465

Query: 457 ---------------------VSRENGK--FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
                                   E  K   S++ +   FGYRR+ + RPLR+S  +   
Sbjct: 466 EALGLEKAAEQKSNRGRQPATAKAEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDE 525

Query: 494 GLARL 498
            +A L
Sbjct: 526 AIATL 530



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 77/150 (51%), Gaps = 24/150 (16%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG---EWIPDTNL 587
           KT  VK        FI+A   K+P A+PV                +  G   E+  D  L
Sbjct: 635 KTAGVKLDAKENKQFIDAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGEL 694

Query: 588 TEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            + ENVP   +      I++Y   EV PHV DA+I+    D KD E+G VGYEI FNR F
Sbjct: 695 RDNENVPLNPAQSTSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHF 754

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y YQP R L +IDA+L  V A++  LL+E+
Sbjct: 755 YVYQPPRPLSEIDADLDAVSAEMMKLLQEV 784


>gi|327396329|dbj|BAK13751.1| type I site-specific restriction-modificationsystem, M subunit and
           related helicases [defense mechanisms] hypothetical
           protein [Pantoea ananatis AJ13355]
          Length = 786

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/535 (42%), Positives = 317/535 (59%), Gaps = 62/535 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY     S++  ++
Sbjct: 10  AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYDELKASSLPEDA 69

Query: 72  ----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
                ++ +  SF+NTS   L  +G  + + NLESYI +FS +A+ IFE F FS  +  L
Sbjct: 70  KEKFLLRASTLSFFNTSRMDLGKMGQNDIKANLESYIQAFSPDAREIFEHFKFSEFVGLL 129

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +  TPRD+V L 
Sbjct: 130 EDANLLFKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAESSNETAGEHFTPRDIVRLT 189

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQ 245
           T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V      H++ P  ++   GQ
Sbjct: 190 TSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYV------HELNPNAVMRAFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y LSNPPFG  W
Sbjct: 243 ELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPQDQFDYMLSNPPFGVDW 295

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN------GGGRAAI 358
           +K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N       GGR  I
Sbjct: 296 KKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGTVSNGGRIGI 355

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T I TY+WILSN+K  ER
Sbjct: 356 ILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGITTYVWILSNKKAPER 415

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRR---------QILDIYVSRENGK----- 463
           +GKVQLI+ T+L   +R   G KR ++ +D  +         +++D     E G      
Sbjct: 416 KGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFEVMDATTLEELGLEKAAE 475

Query: 464 --------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                                S++ +   FGYRR+ + RPLR+S  +    +A L
Sbjct: 476 QKSSRGRQPVTARTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEAIATL 530



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 79/150 (52%), Gaps = 24/150 (16%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG---EWIPDTNL 587
           KT  VK        FI+A   K+P A+PV                +  G   E+  D  L
Sbjct: 635 KTAGVKLDAKENKQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGEL 694

Query: 588 TEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            + ENVP   +      I+DYF  EV PHV DA+I+    D KD E+G VGYEI FNR F
Sbjct: 695 RDNENVPLNPAVSTSDLIEDYFKAEVLPHVNDAWINADKRDAKDNEVGIVGYEIPFNRHF 754

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 755 YVYQPPRPLEEIDADLDAVSAEIMKLLQEV 784


>gi|294054711|ref|YP_003548369.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
 gi|293614044|gb|ADE54199.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
          Length = 753

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/501 (46%), Positives = 312/501 (62%), Gaps = 37/501 (7%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +LA +IW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV  K        +  
Sbjct: 7   NLAAYIWSLADLLRGDFKQSQYGRVILPFTLLRRLECVLEASKPAVLAKADEIKDKGLSE 66

Query: 70  ES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+     ++  G SF+NTS+  LS LG +    NLESY+ SFS +A+ IFE F FS  I 
Sbjct: 67  EAQEKMLLRAGGLSFFNTSKMDLSKLGESGIAANLESYVQSFSKDAREIFEHFKFSEFIG 126

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L  A LLYK+ +   G +L P  + +  M  ++E LIR+F    +E A +  TPRD+V 
Sbjct: 127 LLGDANLLYKVVQRVKGADLSPAAISNHDMGLVFEELIRKFAESSNETAGEHFTPRDIVR 186

Query: 186 LATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVP 242
           L T+L+ ++ DDAL K+  G+IRT+YDPTCGTGGFL+  M +V      H++ P  ++  
Sbjct: 187 LTTSLVFMEDDDALTKQ--GIIRTIYDPTCGTGGFLSSGMEYV------HELNPQAVMRA 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F Y LSNPPFG
Sbjct: 239 FGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSNDQLYADKFDYMLSNPPFG 291

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +KL     GG R  I+L+
Sbjct: 292 VDWKKIEGDIRTEHTQKGFDGRFGPGLPRVSDGSLLFLLHLLSKLRDASEGGARIGIILN 351

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W+LSN+K  +R+G+
Sbjct: 352 GSPLFTGGAGSGESEIRRYILEADLLETIVALPTDMFYNTGIATYVWVLSNKKAADRKGQ 411

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE------------NGKF-SRM 467
           VQLIN   LW  +R   G KRR + D    +I   + S E            +  F +++
Sbjct: 412 VQLINGVHLWDPMRKSLGSKRRQLGDGHIAKITRTFGSFEAIAPQPLDEADASKTFAAKL 471

Query: 468 LDYRTFGYRRIKVLRPLRMSF 488
                FGYRRI + RPLR S+
Sbjct: 472 FKTHEFGYRRITIERPLRESY 492



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 62/98 (63%), Gaps = 6/98 (6%)

Query: 580 EWIPDTNLTEYENV------PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           E+ PD +L ++ENV      P     + YF +EV PHVPDA+ID   +D  D++IG VGY
Sbjct: 654 EYKPDGDLRDFENVALAPSQPVNAVNEAYFQKEVLPHVPDAWIDGTKVDALDEQIGIVGY 713

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EI FNR FYQYQP R L+ ID +L  V   I  LL+E+
Sbjct: 714 EIPFNRHFYQYQPPRDLEAIDRDLDAVSGDIMKLLQEV 751


>gi|255320276|ref|ZP_05361461.1| N-6 DNA methylase [Acinetobacter radioresistens SK82]
 gi|255302715|gb|EET81947.1| N-6 DNA methylase [Acinetobacter radioresistens SK82]
          Length = 761

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/516 (42%), Positives = 322/516 (62%), Gaps = 41/516 (7%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + +A+FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE +++AV  ++      N+ 
Sbjct: 7   SQIASFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHEKVSKLNLP 66

Query: 69  LESFVKVA-----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            E+  K+      G +F+NTS   LS +G ++ + NL +Y+ SFS +A+ IFE F+F   
Sbjct: 67  EEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIFEYFNFIEF 126

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L  A LLYK+ + F+  +L P  V +  M  ++E LIRRF    ++ A +  TPRD+
Sbjct: 127 AGLLNDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNDTAGEHFTPRDI 186

Query: 184 VHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--IL 240
           V L TAL+ ++ DD L K+  G+IRT+YDPT GTGGFL+  M ++      H++ P  ++
Sbjct: 187 VRLTTALVFMEDDDVLTKD--GIIRTIYDPTAGTGGFLSSGMEYL------HELNPNAVM 238

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D  +  +F Y LSNPP
Sbjct: 239 RAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLSVDQFDYMLSNPP 291

Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRAA 357
           FG  W+K +  ++ EH + G  GRFG GLP++SDGS+LFLMHL +K+    +   G R  
Sbjct: 292 FGVDWKKIEQDIKDEHEQKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSTESGSRIG 351

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN+K  E
Sbjct: 352 IILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSNKKDAE 411

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY--------------VSRENG 462
           R+GKVQLINA++L T +R   G KR  + + +   I   Y                ++  
Sbjct: 412 RKGKVQLINASNLSTKMRKSLGSKRNYLTETEIATITQNYGDFVAVDTLAQDGETEQQKP 471

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
             S++     FGYRR+ + RPLR+S  +  + +  L
Sbjct: 472 FASKIFASHEFGYRRVTIERPLRLSAQITDSAITAL 507



 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 91/172 (52%), Gaps = 29/172 (16%)

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD------- 576
           +Q   +   +  +K+++K  + K L  K  K  +    +A   K+P A+PV +       
Sbjct: 593 EQFDDFNQFDDVLKKALKQTDIK-LDAKEKKQLL----DAITWKNPEAEPVINKVLKQAE 647

Query: 577 --------VNG---EWIPDTNLTEYEN------VPYLESIQDYFVREVSPHVPDAYIDKI 619
                     G   E++ D +L + EN      V   E I+DYF REV  HVPDA+I+  
Sbjct: 648 NPLYGQFSYQGKVVEFVQDADLRDAENIALNPKVSTTELIEDYFKREVQLHVPDAWINAD 707

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             DEKD EIG VGYEI FNR FY YQP R L +IDA+L  V A+I  LL+E+
Sbjct: 708 KRDEKDSEIGIVGYEIPFNRHFYVYQPPRDLSEIDADLDAVSAEIMHLLQEV 759


>gi|126666658|ref|ZP_01737636.1| type I restriction-modification system, M subunit, putative
           [Marinobacter sp. ELB17]
 gi|126629046|gb|EAZ99665.1| type I restriction-modification system, M subunit, putative
           [Marinobacter sp. ELB17]
          Length = 728

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/742 (33%), Positives = 382/742 (51%), Gaps = 99/742 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L  +IW  A  L G ++   +  V+LP  +LRRL+C LEPT+  V ++Y       +  
Sbjct: 8   QLKGYIWDIANRLRGPYRPPQYRLVMLPIIVLRRLDCVLEPTKDKVLKEYEKLSAQGMPE 67

Query: 70  ESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
            +  ++ G        +  YNTS ++   L     N   NL +YI  FS  A+AIFE F 
Sbjct: 68  NAMERILGKAADPSRTHPLYNTSPFTFQRLLGDPENIAPNLVAYINGFSSTARAIFERFK 127

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   I +L+ +  L+ I K  + ++LHPD + +  M  ++EHL+ RF  + +E A D  T
Sbjct: 128 FIDQIEKLDVSNRLFTIIKAMAEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDHFT 187

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   L+   +  ++  +PG+ RT+YDPTCGTGG L+++   + D  +       
Sbjct: 188 PREVIRLMANLVYTGEKDVY--TPGIYRTIYDPTCGTGGMLSESEKFILDQNAQAN---- 241

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHYC 295
           L   GQE   E+ A+C + MLI+  ++        +I  G TL    ++D F GK+FHY 
Sbjct: 242 LALFGQEYNDESWAICCSDMLIKDEDT-------SSIVLGDTLGDGKTRDGFEGKQFHYL 294

Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG-- 352
           L+NPPFG +W++ K  VEKEHK  G  GRFG GLP I+DGS++FL H+ +K+    +G  
Sbjct: 295 LANPPFGVEWKEQKHVVEKEHKEMGFAGRFGAGLPAINDGSLMFLQHMMSKMHPYKDGDE 354

Query: 353 ---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+W+
Sbjct: 355 DSAGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYVWL 414

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK----- 463
           ++NRK  ERRGKVQLI+ T     ++     KR  I ++Q   +  +Y + ++G+     
Sbjct: 415 VTNRKATERRGKVQLIDGTRFSQRMKKSLNNKRNEITEEQIHDLTRLYGNYQDGEVADVI 474

Query: 464 ------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-- 509
                        S + + R FG+ ++ V RPLRM+F+     +ARL+    +  L+   
Sbjct: 475 MNHKTGERETRVVSHIFENREFGFLKVTVERPLRMNFMATPERIARLDDQAAFASLATSK 534

Query: 510 --LHQSFWLD----------ILKPMMQQIYPYGWAESFVK-ESIKSNEAKTLKVKASKSF 556
              H++               ++ ++  +   G ++     +S  +  A+   +K     
Sbjct: 535 KRKHEAVAAQEIEEGRQIQASIRTLLSTLASNGQSKDRAAFDSHMNVAAQKTGLKLPAPI 594

Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP---------------------- 594
             A  NA G +DP A+   D  G+  PD+ L + EN+                       
Sbjct: 595 KKAIFNALGERDPNAEICLDGKGQPEPDSELRDTENISLPAGTQLPLPMQFGSDKPNDEL 654

Query: 595 ---YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
              +   I  Y  REV PHVPDA++        D    +VGYEI  NR FY Y+P R L 
Sbjct: 655 METFRADIDAYMAREVLPHVPDAWV--------DYSKTKVGYEIPINRHFYVYKPPRPLD 706

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
            I+ E+  +E +IA LL+ +  
Sbjct: 707 KIETEITTLEGEIAELLKGLVV 728


>gi|229819987|ref|YP_002881513.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229565900|gb|ACQ79751.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 661

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 370/694 (53%), Gaps = 67/694 (9%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L++F+W  A+ L G FK   +G V+LPFT+LRRLE  + P R A+         + + 
Sbjct: 2   SQLSSFVWSIADLLRGPFKPHQYGTVVLPFTILRRLEGVMAPHREAMVTAVAKADDATMR 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                +  G  FY TS Y+L+T      N   NL  Y+  FS     +F+ FDF + I +
Sbjct: 62  RALVRRATGLPFYTTSSYTLATALEDPDNLAANLVDYVNGFSAEVD-VFKHFDFEARIHQ 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+ A  L  + + F+ ++L  D V +  M +++EHLI +     +  A DF TPRD + L
Sbjct: 121 LDAADRLIPVTQGFARVDLSTDHVSNAGMGDLFEHLIFKDFEASNAEAGDFYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHG 244
              L+   D +    +PG+ R++YDP  GTGG L+ A  H+      H++ P   L    
Sbjct: 181 LVDLVFAEDTSALA-APGITRSVYDPAAGTGGMLSVAEEHL------HELNPKANLALFA 233

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ P ++A+  + MLI+    +       N++ G TL++DLF G+ F + LSNPP+G  
Sbjct: 234 QEINPASYAIAKSDMLIKGQNIE-------NVRLGDTLAEDLFDGETFDFALSNPPYGVD 286

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLS 361
           W+  + AV  EH  G  GRF PGLP + DGSMLFL+HL  K+  P +    GGR  IVL+
Sbjct: 287 WKAAEKAVRAEHVRGTGGRFAPGLPSVGDGSMLFLLHLVAKMR-PVDARGNGGRGGIVLN 345

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLFNG AGSG SEIR  LLE+DL++AIVALP D+F+ T IATYLWIL N K  ERR K
Sbjct: 346 GSPLFNGGAGSGPSEIRGHLLEHDLVDAIVALPNDMFYNTGIATYLWILDNSKQPERRRK 405

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRE---NGKFSRMLDYRT 472
           VQLI+AT L T +R   G KR  I+   R +I+  Y     V+ +   +G  S++ D   
Sbjct: 406 VQLIDATKLGTKMRKSLGSKRVEISTADRGRIVQAYDRFDGVAADGDASGPRSKVFDTLD 465

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           F Y  + V RPLR++F   +    RLE  +  + LS +     + +L     ++Y     
Sbjct: 466 FAYWSVTVERPLRLNF---QVTPERLENVMASKPLSKVEG--LVGVLSAFGDELY----- 515

Query: 533 ESFVKESIKSNEAKTL---KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
               ++         L   +V  +     A   A G +D  AD  TD  G   PDT L +
Sbjct: 516 --LNRDEFMGRLGTHLGAHRVGLTTPQRKALWQALGERDETADTCTDSKGRPEPDTGLRD 573

Query: 590 YENVPY------------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
            E VP+             ++IQ YF  EV+PHVPDA+ID            RVGYEI F
Sbjct: 574 TEIVPFGWSDHPKADDAERDTIQAYFDAEVAPHVPDAWIDWTKT--------RVGYEIPF 625

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            R FY+Y P R L +IDA+L+   ++I  LL E+
Sbjct: 626 TRHFYEYVPPRPLAEIDADLEASVSRILDLLREV 659


>gi|124515148|gb|EAY56659.1| putative N-6 DNA methylase [Leptospirillum rubarum]
          Length = 581

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/479 (47%), Positives = 311/479 (64%), Gaps = 19/479 (3%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-DLE 70
           A F+W  A+ L GD+K  D+GKVILPFT+LRRL+C LEPT++ V ++Y +   S I DL 
Sbjct: 9   AAFLWSVADLLRGDYKQADYGKVILPFTVLRRLDCVLEPTKNQVLQEYESRKNSGIADLS 68

Query: 71  SFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            F+ KV+G  FY+ S ++ S L     + R NLESY+  FS+NA+ +FE F F   I+ L
Sbjct: 69  PFLLKVSGQKFYSVSRFTFSKLLDDPPHIRQNLESYLGDFSENARDVFERFRFGEQISNL 128

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   LL+ I + F+ I+LHPD VP+  M  I+E LIRRF    +E A +  TPR+V+ L 
Sbjct: 129 DSKNLLFMIVQKFATIDLHPDQVPNEEMGLIFEELIRRFAETSNETAGEHFTPREVIRLM 188

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L   DD    + PG++R+LYDP  GTGG L+ A +++ +     +    L   GQEL
Sbjct: 189 VNILFVADDEALSK-PGVVRSLYDPAAGTGGMLSVAEDYLREHNPDMR----LTVFGQEL 243

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             E++++C A M+I+    DP R     I  G++ ++D F   +F Y LSNPPFG  W+K
Sbjct: 244 NDESYSICKADMMIK--GQDPNR-----IVSGNSFTQDGFPHDKFDYMLSNPPFGVDWKK 296

Query: 308 DKDAVEKEH--KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            +D V+ EH  K    GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  IVL+ SPL
Sbjct: 297 IQDVVKNEHERKGYGGGRFGPGLPRVSDGSLLFLLHLLSKMRPPGEGGSRIGIVLNGSPL 356

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGESEIRRW+LEND +EAI+A+PTDLF+ T IATY+WILSNRK+ ER  KVQLI
Sbjct: 357 FTGDAGSGESEIRRWILENDFLEAIIAMPTDLFYNTGIATYIWILSNRKSPERTNKVQLI 416

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           NA DL+  +R   G KR  + D+  R+I  IY   EN   S++ D + FG+R+I V RP
Sbjct: 417 NAVDLYAKMRKSLGNKRNYLTDENIREITRIYGEFENKGISKIFDTQDFGFRKITVDRP 475



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 67/89 (75%)

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           D +L + ENVP  E I +YF REV PHVP+A+I++   D KD ++G+VGYEINFNR+FY 
Sbjct: 492 DPDLRDTENVPLKEDINEYFEREVKPHVPEAWINEEIRDAKDGKVGKVGYEINFNRYFYV 551

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           Y+P R L++I A+LK VE++I  +L+++ 
Sbjct: 552 YKPPRPLEEIKADLKAVESRILEILKQVT 580


>gi|66769485|ref|YP_244247.1| type I restriction-modification system, M subunit, putative
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|66574817|gb|AAY50227.1| type I restriction-modification system, M subunit, putative
           [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/739 (34%), Positives = 391/739 (52%), Gaps = 103/739 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++      +   +
Sbjct: 9   LKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLLAKDTPEQ 68

Query: 71  SFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ IFE F F
Sbjct: 69  AMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARRIFERFKF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E A D  TP
Sbjct: 129 GDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDHFTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPP 238
           R+V+ L   L+   +  ++K  PG++R++YDPTCGTGG L+++   +   +  +H  +  
Sbjct: 189 REVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNAAAHLHL-- 244

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHY 294
               +GQE   E+ A+C + MLI+  ++        NI +G TL    +KD F G+RFHY
Sbjct: 245 ----YGQEYNDESWAICCSDMLIKDEDT-------ANIVKGDTLGDGKTKDGFEGERFHY 293

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLE-----L 348
            L+NPPFG +W+  K  VE EH N G  GRFG GLP I+DGS+LFL H+  K+       
Sbjct: 294 MLANPPFGVEWKDQKTVVENEHANHGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYEEGH 353

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
           P   G + AIV + SPLF+G AGSG S IRRW++E D ++ IVALP  LF+ T I TY+W
Sbjct: 354 PDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIEKDWLDTIVALPDQLFYNTGIYTYVW 413

Query: 409 ILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIYVSRENGK---- 463
           +++NRK EER+G VQLI+ T  +   +++   KR  I+D+Q   + ++Y +  +G+    
Sbjct: 414 LVTNRKPEERQGYVQLIDGTRFFRKMMKSLNNKRNEISDEQIEALTELYGNYGDGESADV 473

Query: 464 -------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-----ADITWR 505
                         SR+ + R FG+ ++ V RPLRM+F      +ARL+     A++   
Sbjct: 474 VIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPGRIARLDEQSAFANLATS 533

Query: 506 KLSPLHQSFWLDI---------LKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKS 555
           K     ++   +I         ++ ++ ++   G +++  V E+     AK   +K    
Sbjct: 534 KKRKDEKAARQEIAEGQAMQRSIRELLAELAAKGIYSDREVFEADLEKAAKKAGIKLPAP 593

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV---------------------- 593
              A   A G +DP+A    D  G   PD+ L + EN+                      
Sbjct: 594 IRKAIFVALGERDPQAKICRDAKGRPEPDSELRDTENISLPEGTELPLPMAFGPDKPNDD 653

Query: 594 ---PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
               + ++I+DY  REV PHV DA++D  F   K      VGYEI  NR FY Y+P R L
Sbjct: 654 LVEAFRDTIEDYMRREVLPHVADAWVD--FSKTK------VGYEIPINRHFYVYKPPRPL 705

Query: 651 QDIDAELKGVEAQIATLLE 669
             I+++++ +E +IA LL+
Sbjct: 706 PQIESDIRQLEGEIADLLK 724


>gi|148653130|ref|YP_001280223.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
 gi|148572214|gb|ABQ94273.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
          Length = 806

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/567 (40%), Positives = 331/567 (58%), Gaps = 72/567 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           ++ +LA FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+        
Sbjct: 13  TSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQKISAMG 72

Query: 67  IDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           ++ E+       K  G +FYNTS  +L+ +G ++   NL  YI SFS +A+ IF  F F 
Sbjct: 73  LNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFAHFKFE 132

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLYK+ + F  ++L P+ V +  M  ++E LIRRF    +E A +  TPR
Sbjct: 133 EFVGQLNDANLLYKVVQKFQNVDLSPEAVSNYEMGLVFEELIRRFAESSNETAGEHFTPR 192

Query: 182 DVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           D+V L T+L+ ++ DDAL K+  G+IRT+YDPT GTGGFL+  M +V +   +     ++
Sbjct: 193 DIVRLTTSLVFMEDDDALIKD--GIIRTIYDPTAGTGGFLSSGMEYVLELNPN----AVM 246

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLI+  E          I+ G+TLS D     +F Y LSNPP
Sbjct: 247 RAFGQELNPESYAICKADMLIKGQEV-------SRIKLGNTLSDDQLPADKFDYMLSNPP 299

Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANK-----------LEL 348
           FG  W+K    ++ EH + G  GRFGPG P++SDGS+LFL+HL +K           LEL
Sbjct: 300 FGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPVASPKRDSLEL 359

Query: 349 PPNG---------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                        G R  I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+
Sbjct: 360 SNRSSEQQDTSVTGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFY 419

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQIL----- 453
            T IATY+WIL+N K  ER+GKVQLI+ T+L++ +R   G KR  ++++  + I      
Sbjct: 420 NTGIATYVWILTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGD 479

Query: 454 -------------DIYVSR---------ENGK--FSRMLDYRTFGYRRIKVLRPLRMSFI 489
                        D+  +R         E  K   S++ D   FGYRR+ + RPLR+S  
Sbjct: 480 FEVVDARALDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQ 539

Query: 490 LDKTGLARLE-ADITWRKLSP-LHQSF 514
           +    +  L  A+ T+  + P L++ F
Sbjct: 540 MSDEAIESLRYAERTYDSVMPALYEKF 566



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 6/98 (6%)

Query: 580 EWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           E+  D++L +YEN+P        E I+ YF REV PHV DA+ID    D  D+EIG VGY
Sbjct: 707 EFETDSDLRDYENIPLDPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGVVGY 766

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EI FNR FY Y+P R L +IDA+L  V   I  LL E+
Sbjct: 767 EIPFNRHFYVYEPPRPLSEIDADLDKVSQDIMQLLSEV 804


>gi|261211185|ref|ZP_05925474.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|260839686|gb|EEX66297.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
          Length = 788

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/527 (42%), Positives = 320/527 (60%), Gaps = 66/527 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV  +       N+  E+
Sbjct: 10  AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKEAVVIQAEKIKAMNLPEEA 69

Query: 72  FVKV-----------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             K+            G +F+NTS  +L  +G ++ + NLE YI SFS +A+ IFE F F
Sbjct: 70  QEKMLFRATQTPDNAKGLTFFNTSPMNLGKMGQSDIKANLERYIQSFSADAREIFEHFKF 129

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  L  A LLYK+ K F+  +L P  + +  M  ++E LIRRF    +E A +  TP
Sbjct: 130 DEFVGLLNDANLLYKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAESSNETAGEHFTP 189

Query: 181 RDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238
           RD+V L T+L+ ++ D+AL K+  G+IRT+YDPT GTGGFL+  M +V      H++ P 
Sbjct: 190 RDIVRLTTSLVFMEDDEALTKD--GIIRTIYDPTAGTGGFLSSGMEYV------HELNPK 241

Query: 239 -ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y LS
Sbjct: 242 AVMRAFGQELNPESYAICKADMLIKG------QDVSR-IKLGNTLSNDQLPADKFDYMLS 294

Query: 298 NPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKL------ELPP 350
           NPPFG  W+K +  ++ EH   G  GRFG GLP++SDGS+LFLMHL +K+      +   
Sbjct: 295 NPPFGVDWKKIEGEIKDEHTLKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRDTHSVDGTV 354

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           + GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W+L
Sbjct: 355 SDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVL 414

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQI------LDIYVSRENGK 463
           SN+K  ER+G+VQLI+ ++L   +R   G KR ++++D  + I       ++  +RE  K
Sbjct: 415 SNKKAAERKGQVQLIDGSNLCGKMRKSLGSKRNVMSEDDIKTITRTFGDFEVVDARELDK 474

Query: 464 -----------------------FSRMLDYRTFGYRRIKVLRPLRMS 487
                                   S++ D   FGYRR+ + RPLR+S
Sbjct: 475 PAEQKSSRGRQAANPKADTPKTFASKIFDTHEFGYRRLTIERPLRLS 521



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 62/98 (63%), Gaps = 6/98 (6%)

Query: 580 EWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           E+  D +L + ENVP   S      I+ YF REV PHV DA+I+    D+KD EIG VGY
Sbjct: 689 EFQQDGDLRDNENVPLDPSVSTSTLIESYFKREVQPHVADAWINADKRDDKDAEIGVVGY 748

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EI FNR FY YQP R L+ IDA+L  V   I TLL+E+
Sbjct: 749 EIPFNRHFYVYQPPRALEAIDADLDAVSKDIMTLLQEV 786


>gi|282865355|ref|ZP_06274407.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282559828|gb|EFB65378.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 581

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/482 (44%), Positives = 297/482 (61%), Gaps = 19/482 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +FIW  A+ L G ++   +G V+LPFT+LRRL+C LEP ++ VRE    F   N  
Sbjct: 2   SALGSFIWSIADQLRGPYRPNQYGTVVLPFTILRRLDCILEPDQATVRELAAKFENPNRL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K  G +FYNTS YS + L   +    +NL  YI  FS +   +FE FDF   I  
Sbjct: 62  KVEVKKATGRTFYNTSNYSFANLLADADGLADNLADYIDRFSADVD-VFEYFDFKKEILA 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKAGLL +I K+F  I+LHPD V +  M + +E++IR+F    +E + D  TPRD + L
Sbjct: 121 LEKAGLLREIVKSFGKIDLHPDVVSNSDMGDAFEYIIRKFNEAANETSGDHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    D    E  G+IR+LYDPT GTGG L+ A  H+       K    L  +GQE
Sbjct: 181 LVDLLFAEKDVDLTEG-GIIRSLYDPTAGTGGMLSLAEEHLLAENPGAK----LGLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P+++A+C + +L +  ++        NI  G+TL+ D F G++F YC+SNPP+G  W+
Sbjct: 236 YNPQSYAICKSDLLAKGHDA-------TNIAFGNTLTDDAFKGRQFDYCMSNPPYGVDWK 288

Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +   AV++E  + G  GRF PGLP  SDG MLFL+HL +K+  P +GGGR  IV++ SPL
Sbjct: 289 QHAKAVKEERDSAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRVGIVMNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F+G A SG S IRRWLLE+DL+EAIVALPT++FF T IATY+WIL N K  +R+GKVQLI
Sbjct: 349 FSGAAESGPSNIRRWLLESDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDRQGKVQLI 408

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLR 482
           + T  WT +R N G K R I+D  R +++ +Y   E+   + S++L    FGY  + V R
Sbjct: 409 DGTSFWTKMRKNLGAKGREISDADRAEVVRLYADYEDADPELSKVLRNDEFGYWMVTVER 468

Query: 483 PL 484
           PL
Sbjct: 469 PL 470



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 20/113 (17%)

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDAYIDK 618
            +PV    G+  PD+   + ENVP+             E IQ YF  EV PHVPDA+ID 
Sbjct: 475 GNPVVSRKGDPKPDSKKRDTENVPFTYGGSTAGAAAEREVIQAYFDAEVKPHVPDAWIDW 534

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                      + GYE+ F R FY+Y P R L +IDA+L+   A+I  LL E+
Sbjct: 535 AKT--------KTGYEVPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579


>gi|309390281|gb|ADO78161.1| N-6 DNA methylase [Halanaerobium praevalens DSM 2228]
          Length = 698

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 245/720 (34%), Positives = 380/720 (52%), Gaps = 91/720 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIW  A  L G +K   +G +ILP ++LRR +C LEPT+  V EK        +++  
Sbjct: 8   VNFIWNIANLLRGPYKPEKYGDIILPLSVLRRFDCILEPTKDKVLEK-----AKQVEIPE 62

Query: 72  FVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +  A G  F+N S+Y    L     N   NL +YI  FS N + I E+FDF   I +L 
Sbjct: 63  LLNAAAGLKFHNKSKYDFEKLLDDPDNIAENLRAYIRGFSANIREIMENFDFDKEITKLN 122

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              LL+ + K F+ ++LHP+ V ++ M  I+E LIRRF      G  D  TPR+V+ L  
Sbjct: 123 SNNLLFLVVKEFNKLDLHPEKVSNQEMGYIFEELIRRFSENAEAG--DHYTPREVIELMV 180

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++   ++ +   +P  I T+ D  CGTGG L+ A N++       ++      +GQE+ 
Sbjct: 181 NIIFSGEEDVVT-NPANISTIGDFACGTGGMLSVAENYIHKMNKEAEV----ALYGQEIN 235

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
            +++A+C A MLI+        + + NI  G++L+ DL  G R  Y L NPPFG  W KD
Sbjct: 236 DQSYAICKADMLIK-----DEGENADNIALGNSLTNDLHKGLRVRYGLMNPPFGVSWSKD 290

Query: 309 KDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
              V+KEHKN G  GRFG G P+ SDGS+LFL H+ +K++    G  R AI+ + SPLF 
Sbjct: 291 SKEVKKEHKNQGFDGRFGAGTPRTSDGSLLFLQHMLSKMKTDKKGS-RMAIIFNGSPLFT 349

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------RRGK 421
           G A SGESEIRRW++ENDL+E I+ALP +LF+ T IATY+W+LSNRK ++      R+ K
Sbjct: 350 GDANSGESEIRRWIIENDLLEGIIALPEELFYNTGIATYIWVLSNRKNDDLAKGPIRKDK 409

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +QL++AT     +R   GKKR  I   Q  +I +IY + ++ ++S++ D   FGY ++++
Sbjct: 410 IQLVDATSFSEPMRKSLGKKRNKITKPQINRITEIYGAFQDNEYSQIFDKEEFGYLKVRI 469

Query: 481 LRPLRMSFILDKTGLARLEADITWRKL-------------------------------SP 509
            RPL+++F + +  +  + A+ T+ KL                                 
Sbjct: 470 ERPLKLNFKITEDRIENIYAENTFSKLFDEEKYKKLKKLSEAPEFKSKDKNKLEKLEAGK 529

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
             Q   L+ L+  ++Q   +   + F KE +K        +   +S + A  N   ++D 
Sbjct: 530 KLQDKILNRLRANIEQDKVWKNRKEF-KEVLKEILG---DLDLKRSLMKAVRNGLAKRDE 585

Query: 570 RADPVTDVNGEWIPDTNLTEYENVPY------------------LESIQDYFVREVSPHV 611
            AD      G+   DT+L +YE + +                   ++IQ YF  EV PHV
Sbjct: 586 TADYCKK-RGKIESDTDLRDYERILFSHKVEGYKQDYSDFVEKEKDNIQTYFEEEVKPHV 644

Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           P+A++D  +         RVGYEI F R+FY+++       I  +++ +EA+I  +++++
Sbjct: 645 PEAWVDYSYT--------RVGYEIPFTRYFYEFEELEPSHKIKEDIEKLEAEINEIMQKV 696


>gi|255308176|ref|ZP_05352347.1| N-6 DNA methylase [Clostridium difficile ATCC 43255]
          Length = 675

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/692 (34%), Positives = 385/692 (55%), Gaps = 76/692 (10%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFG--------- 63
           F+W  AE L G +K  D+ KV+LP  ++RR +C L+   R  V+  Y  +          
Sbjct: 12  FLWNIAESLRGTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDFLPEEEKDE 71

Query: 64  --------GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
                     NIDL+         FYN S+++   L   S N ++N E Y+  FS++ K 
Sbjct: 72  LVIVDLKENHNIDLQ---------FYNVSDFTWKKLLDDSENIKSNFEEYLNGFSNSVKE 122

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I   F F   IA+L+K   LY +      ++LH ++V +  M  IYE ++RRF +E S  
Sbjct: 123 IIGKFKFKDEIAQLDKKDKLYAVLSKMYEVDLHINSVSNNEMGYIYEEMLRRF-TENSAA 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
            E + TPR+V+ L   +L    +    E  G + ++ D  CGTGG L+ A ++V      
Sbjct: 182 GEQY-TPREVIRLCMEMLFMGKENFLTEE-GKVISIADFCCGTGGMLSIAEDYV------ 233

Query: 234 HKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            K+ P  I+  +GQEL  E+ A+C A M+++    D       NI+ G+TL++D F+G++
Sbjct: 234 EKVNPSAIVNVYGQELLDESFAICQADMIMKGQNPD-------NIRLGNTLTQDRFSGEK 286

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + +SNPPFG  W+ ++  V++E   G  GRFG G P++SDGS+LFL ++ +K+     
Sbjct: 287 IRFLISNPPFGVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKM-YDDE 345

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R AI+ + SPLF G AGSGES IR+W++E DL+E I+ALPTD+F+ T IATY+W+L+
Sbjct: 346 EGSRIAIIFNGSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYIWVLT 405

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           N+K ++R+GK+QL+NA++ +  +R   G KR+ I+ +Q  +I +IY   E  + S++ D 
Sbjct: 406 NKKEDKRKGKIQLVNASEYYQLMRKSLGNKRKEISLEQIEEIKEIYERFEESENSKIFDN 465

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-----------------LHQS 513
             FGYR++ + RPL++SF +++  +  ++    +  LS                  + Q 
Sbjct: 466 EGFGYRKVTIERPLKLSFRVNEEAIENVKNTTQFINLSVSKKKDEEVKVKEEAEGRVKQD 525

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
             L +L+    + + Y   + F+K+ +KS ++K   V  S   I A +NA G ++  A  
Sbjct: 526 KLLKLLESFDSE-FEYMKRDKFIKD-LKS-KSKLYDVALSAGLIKAIVNAIGVRNEDAVV 582

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
             D  G    D++L + E++   E + +YF +EV PHV DAYID+  ID        +GY
Sbjct: 583 CKDAKGNIESDSSLKDTESIALKEDVYEYFEKEVKPHVEDAYIDESSID-------NIGY 635

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EI F R+FY+Y+  +   DI  E++ +E++IA
Sbjct: 636 EIPFTRYFYKYEKLKSFDDIMKEVESLESEIA 667


>gi|86738912|ref|YP_479312.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86565774|gb|ABD09583.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 583

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/482 (44%), Positives = 290/482 (60%), Gaps = 19/482 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +FIW  A+ L G ++   +G VILP T+LRRL+C LEP R  VRE    F   N  
Sbjct: 2   STLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDCILEPDRETVRELARTFDNPNRL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K  G  FYNTS Y  S L   +    +NL  Y+  FS +   +FE FDF   I  
Sbjct: 62  KIEVKKATGRPFYNTSNYGFSNLLADADGLADNLADYLDRFSADVD-VFEYFDFKKEILA 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKAGLL +I  +F  I+LHP  V +  M + +E++IR+F    +E + D  TPRD + L
Sbjct: 121 LEKAGLLREIITSFKAIDLHPKVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    +A   E+ G++RTLYDPT GTGG L  A  H+            L  +GQE
Sbjct: 181 LVDLLFAEKEADLSEA-GIVRTLYDPTAGTGGMLALAEEHLLAQNPDAN----LSLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P+++A+C + +L +  ++        NI  G+TL+ D F G++F +C+SNPP+G  W+
Sbjct: 236 YNPQSYAICKSDLLAKGHDA-------TNIAFGNTLTDDAFKGRKFDFCMSNPPYGVDWK 288

Query: 307 K-DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +  K   E+  + G  GRF PGLP  SDG MLFL+HLA+K+  P +GGGR  I+++ SPL
Sbjct: 289 QYAKKVTEERDEAGPYGRFAPGLPATSDGQMLFLLHLAHKMRAPKDGGGRVGIIMNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG AGSG SEIRRWLLENDL+EAIVALPT++FF T IATY+WIL N K  + RG VQ+I
Sbjct: 349 FNGAAGSGPSEIRRWLLENDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDARGLVQII 408

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVS--RENGKFSRMLDYRTFGYRRIKVLR 482
           + T  WT +R N G K R I+D  R +++ +YV     +  +S++L    FGY  I V R
Sbjct: 409 DGTSFWTKMRKNLGSKGREISDTDREKVVSLYVDFLDADPDYSKVLSNDEFGYWTITVER 468

Query: 483 PL 484
           PL
Sbjct: 469 PL 470



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 57/111 (51%), Gaps = 20/111 (18%)

Query: 573 PVTDVNGEWIPDTNLTEYENVPY------------LESIQDYFVREVSPHVPDAYIDKIF 620
           PV D  G+  PD    + ENVP+            L+ I  YF  EV PHVPDA+ID   
Sbjct: 477 PVVDRKGQRKPDPKKRDTENVPFTYGGSTAGRAGKLDVINAYFDAEVKPHVPDAWIDWAK 536

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +        + GYEI F R FY+Y P R L +IDA+L    A+I  LL E+
Sbjct: 537 V--------KTGYEIPFTRHFYRYVPPRPLAEIDADLDKQIAKILDLLREV 579


>gi|311741898|ref|ZP_07715709.1| type I restriction-modification system DNA-methyltransferase
           [Aeromicrobium marinum DSM 15272]
 gi|311314904|gb|EFQ84810.1| type I restriction-modification system DNA-methyltransferase
           [Aeromicrobium marinum DSM 15272]
          Length = 581

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/482 (43%), Positives = 293/482 (60%), Gaps = 19/482 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L NFIW  A+ L G +K   +G VILP T+LRRL+C +EPTR  VR            
Sbjct: 2   SNLGNFIWSIADQLRGVYKPHQYGNVILPMTILRRLDCIMEPTRDEVRALTAKHDNPGAL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                +  G  F+NTS++  ++L       R NL  Y+  FS N   +FE F F + IA 
Sbjct: 62  ALQVKRATGLGFHNTSQFDFASLLADPDGLRANLVDYLTKFSANID-VFERFKFENEIAT 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   LY + + F+ ++LHPD VP+  M +++E LIR+F    +E A +  TPRD + L
Sbjct: 121 LDEKNRLYLVVEKFAEVDLHPDVVPNAAMGDLFEELIRKFAEASNEEAGEHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   +     E PG +R++YDPT GTGG L+ A   + +  S  +    L  +GQE
Sbjct: 181 MVDLLFAEEQEGLLE-PGTVRSIYDPTAGTGGMLSVAEERLLERNSDAR----LTLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  +++A+C + M+ +  +S        NI+ G TLS DLF G+ F +C+SNPP+G  W+
Sbjct: 236 LNDQSYAICKSDMIAKGQDS-------SNIRLGDTLSDDLFAGRTFDFCMSNPPYGVDWK 288

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             + +V++E  ++GE GRFGPGLP +SDG MLFL HLA+K+     GGGR  IVL+ SPL
Sbjct: 289 AAEKSVKEERARDGEHGRFGPGLPSVSDGQMLFLTHLAHKMRPEHEGGGRVGIVLNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I+TY+WIL N K  ERRGKVQLI
Sbjct: 349 FNGAAGSGPSEIRRWLLETDLVEAIVALPTDMFFNTGISTYIWILDNTKRAERRGKVQLI 408

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIY--VSRENGKFSRMLDYRTFGYRRIKVLR 482
           +A+ + T +R   G KR+ I+   R ++L +Y      +   S++ D   FGY  I V R
Sbjct: 409 DASGMGTKMRKSLGSKRKEIDTTSRERVLALYDAFDEADPDLSKVFDTTEFGYWTITVER 468

Query: 483 PL 484
           PL
Sbjct: 469 PL 470



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 20/116 (17%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDAY 615
           D + DPVTD  G   PD+   + EN+P+              +I+ YF  EV PHVPDA+
Sbjct: 472 DDKGDPVTDRKGIRKPDSKKRDTENIPFNYGGNTTGDHGRDATIKAYFDAEVLPHVPDAW 531

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ID         +  +VGYEI F R FY Y P R L +IDA+L+   A+I  LL E+
Sbjct: 532 IDH--------KKTKVGYEIPFTRHFYTYVPPRPLAEIDADLEKQVAKILELLREV 579


>gi|329115022|ref|ZP_08243777.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter
           pomorum DM001]
 gi|326695465|gb|EGE47151.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter
           pomorum DM001]
          Length = 615

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/521 (44%), Positives = 306/521 (58%), Gaps = 51/521 (9%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T   ASL++ IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   +  
Sbjct: 4   TPRTASLSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWES 63

Query: 65  SNIDLESFV-KVAGYSFYNTSEYSL-STLGST-NTRNNLESYIASFSDNAKAIFEDFDFS 121
             ID  SF+ K AG  F NTS+++L S LG   N   NL +YI +FS  A+ IF+ F F+
Sbjct: 64  KGIDPMSFMEKAAGLRFVNTSDFTLKSVLGDPDNLTQNLSAYINAFSPAARDIFDHFRFT 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               RL KA LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TPR
Sbjct: 124 EQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEHFTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   L+   DD L       +RT+YDPT GTGG L+ A   + D    H     L 
Sbjct: 184 EVIKLMVNLIFAEDDGLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLD----HNPDARLT 239

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A MLIR       +D+S NI+ G+TLS D     +F Y LSNPPF
Sbjct: 240 MFGQELNPESYAICKADMLIRN------QDVS-NIRLGNTLSDDELADYKFDYMLSNPPF 292

Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  V  EH K G  GRFGPGLP+ISDGSMLFL+HL +K+    +GG R  IVL
Sbjct: 293 GVEWKKVEKTVRAEHEKLGYNGRFGPGLPRISDGSMLFLLHLVHKMRPTKDGGSRFGIVL 352

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+FF T IATY+W+L+NRK + R+G
Sbjct: 353 NGSPLFTGAAGSGESEIRRFVLEDDLVEAIIALPTDMFFNTGIATYVWVLTNRKPKNRKG 412

Query: 421 KVQLINATDLWTSIRNE-GKKR------------RIINDDQRRQILDIYVSR-------- 459
           KVQLI+A+  W  +R   G KR            R+  D Q  Q+  I  +         
Sbjct: 413 KVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITGANGTQTCAVV 472

Query: 460 ----------ENGK-----FSRMLDYRTFGYRRIKVLRPLR 485
                     E GK      SR+ + + FGY+ I V RP R
Sbjct: 473 TQGETPPEAPEGGKVRLAPLSRIFNNKDFGYQTITVERPQR 513



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 8/97 (8%)

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
           + G+ +PDT+L + ENVP  E I  YF REV PH PDA+ID+      DK   ++GYEI 
Sbjct: 527 MKGKKMPDTSLRDTENVPLNEDIHAYFKREVLPHAPDAWIDE------DKT--KIGYEIP 578

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FNR+FY ++P R L++IDA+LK V A+I  +LEE++ 
Sbjct: 579 FNRYFYVFEPPRPLEEIDADLKEVTAKIMAMLEELSV 615


>gi|121583286|ref|YP_973722.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596544|gb|ABM39980.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 607

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/565 (41%), Positives = 328/565 (58%), Gaps = 49/565 (8%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYLAFGGS 65
           + LANF+W  A+ L GD+K  D+GKVILP TLLRRL+C LE T+  V E   K+   G +
Sbjct: 6   SELANFVWSVADLLRGDYKAADYGKVILPLTLLRRLDCVLEGTKEQVLEEHAKHKGEGDA 65

Query: 66  NIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
              L+  +K  +  +FYNTS ++L TL     + R NL +YI  FS +A+ +FE F F  
Sbjct: 66  PTSLDRILKRKSKQAFYNTSPFTLQTLLDDQKHIRQNLTAYIGEFSADARDVFERFKFLE 125

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            +  L+   LL+ + + F+ I+LHPD VP+  M  ++E LIR+F    +E A +  TPR+
Sbjct: 126 RLVELDDKDLLFLLMQKFASIDLHPDAVPNETMGLVFEELIRKFAEASNETAGEHFTPRE 185

Query: 183 VVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           V+ L    L   D +AL K  PG++R++YDPT GTGG L+             K    +V
Sbjct: 186 VIQLIVHCLFSGDSEALSK--PGVVRSMYDPTAGTGGILSVGEAVARSINKSAK----MV 239

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL  E++A+C A MLI+    DP     KNI +G+TLS D F  ++F Y  +NPPF
Sbjct: 240 LFGQELNDESYAICKADMLIKG--QDP-----KNIVRGNTLSADGFPDEKFDYGAANPPF 292

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+K  D ++ EH+  G  GRFGPGLP++SDGS+LFLMHL +K+     GGGR  IVL
Sbjct: 293 GVDWKKVLDPIKTEHETKGFAGRFGPGLPRVSDGSLLFLMHLISKMRPAAEGGGRIGIVL 352

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRRWLLEND++EAI+ALP D+FF T IATY++IL N K  +R+G
Sbjct: 353 NGSPLFTGDAGSGESEIRRWLLENDMLEAIIALPNDIFFNTGIATYIFILDNDKKADRKG 412

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY----------------VSRENGK 463
           KVQLI+AT ++T ++   G KR  I D+Q  +I+ +Y                V    G 
Sbjct: 413 KVQLIDATRMYTKMKKSLGNKRVRITDEQISEIVGVYSAGAKDANFELEFKEPVKSTGGN 472

Query: 464 ---------FSRMLDYRTFGYRRIKVLRPLRMSFILD-KTGLARLEADITWRKLSPLHQS 513
                     S++ + + FGYR++ V RPL        K G    + D+   +  PL +S
Sbjct: 473 PAEAPALRIVSKVFENKFFGYRKVTVDRPLAEGKTGKFKKGEKAFDKDLRDTESVPLTES 532

Query: 514 FWLDILKPMMQQIYPYGWAESFVKE 538
                 + ++  + P  W    VK+
Sbjct: 533 IDAYFKREVLPHV-PDAWVNKDVKD 556



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 59/91 (64%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           GE   D +L + E+VP  ESI  YF REV PHVPDA+++K   DEKD   G+VGYEINFN
Sbjct: 513 GEKAFDKDLRDTESVPLTESIDAYFKREVLPHVPDAWVNKDVKDEKDGLPGKVGYEINFN 572

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           R+FY Y+  RK   I  E+  +E +   L++
Sbjct: 573 RYFYVYKAPRKPAVIAEEILEMEKRFVELMK 603


>gi|167814675|ref|ZP_02446355.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei 91]
          Length = 545

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/603 (39%), Positives = 336/603 (55%), Gaps = 67/603 (11%)

Query: 75  VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
           V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF + + RL KA L
Sbjct: 4   VGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYTQVERLAKADL 63

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           LY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+V+ L   LL 
Sbjct: 64  LYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIRLMVNLLF 123

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
             DD +      ++R +YDPT GTGG L+ A   + +    H     L  +GQEL  E++
Sbjct: 124 IEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLE----HNPVARLRMYGQELNDESY 179

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           A+C A MLI+  + +       NI  G+TLS D   G++F Y LSNPPFG +W+K +  V
Sbjct: 180 AICKADMLIKGQDVE-------NIVAGNTLSDDGHAGRQFDYMLSNPPFGVEWKKVEKTV 232

Query: 313 EKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
             E+ + G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+ SPLF G AG
Sbjct: 233 RAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLNGSPLFTGGAG 292

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           SGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G VQLI+A+  W
Sbjct: 293 SGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGFVQLIDASSFW 352

Query: 432 TSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
             +R   G KRR ++D+    +  ++ +    + + + D            + L    + 
Sbjct: 353 QKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEG---------KELGRWVVP 403

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK-TLK 549
             + +  + A    + + P+ + F          +   +G+    V+ +++  + K  L 
Sbjct: 404 AGSNVPNVPAGGKVKSV-PISRIF----------RNQEFGYTTITVERALRDEQGKVVLG 452

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSP 609
           VK  +           +  P+A            D++L + ENVP  + I  YF REV P
Sbjct: 453 VKGKQ-----------KGKPQA------------DSSLRDTENVPLSDDIGVYFEREVLP 489

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           H PDA+ID    ++K+K    VGYEI FNR FY ++P R L  ID ELK V A I  +LE
Sbjct: 490 HAPDAWID----EQKNK----VGYEIPFNRHFYVFEPPRDLHTIDEELKAVSANIMRMLE 541

Query: 670 EMA 672
           E+A
Sbjct: 542 ELA 544


>gi|330992547|ref|ZP_08316495.1| Putative type I restriction enzyme MjaXP M protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760746|gb|EGG77242.1| Putative type I restriction enzyme MjaXP M protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 528

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/469 (45%), Positives = 292/469 (62%), Gaps = 16/469 (3%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T   ASL++ IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   +  
Sbjct: 4   TPRTASLSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWES 63

Query: 65  SNIDLESFV-KVAGYSFYNTSEYSL-STLGST-NTRNNLESYIASFSDNAKAIFEDFDFS 121
             ID   F+ KVAG  F NTS+++L   LG   N   NL +YI +FS  A+ IF+ F F+
Sbjct: 64  KGIDPMPFMEKVAGLKFVNTSDFTLKGVLGDPDNLTQNLSAYINAFSPTARDIFDHFRFT 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               RL KA LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TPR
Sbjct: 124 EQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEHFTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   L+   DD+L       +RT+YDPT GTGG L+ A   + D    H     L 
Sbjct: 184 EVIRLMVNLIFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLD----HNPDARLT 239

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A MLIR       +D+S NI+ G+TLS D     +F Y LSNPPF
Sbjct: 240 MFGQELNPESYAICKADMLIRN------QDVS-NIRLGNTLSDDELADHKFDYMLSNPPF 292

Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K + AV  EH K G  GRFGPGLP+ISDGSMLFL+HL +K+    +GG R  IVL
Sbjct: 293 GVEWKKVEKAVRAEHEKLGYDGRFGPGLPRISDGSMLFLLHLVHKMRPVKDGGARFGIVL 352

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK   R+G
Sbjct: 353 NGSPLFTGAAGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPTNRKG 412

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           KVQLI+A+  W  +R   G KR+ + +D    +  ++   +  + + ++
Sbjct: 413 KVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATII 461


>gi|297619042|ref|YP_003707147.1| N-6 DNA methylase [Methanococcus voltae A3]
 gi|297378019|gb|ADI36174.1| N-6 DNA methylase [Methanococcus voltae A3]
          Length = 695

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 373/717 (52%), Gaps = 98/717 (13%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIWK AE L G +K   +G VILP  +LRR +C L   + +V E+         D+E+
Sbjct: 8   VNFIWKIAELLRGAYKPEKYGDVILPMAVLRRFDCLLADKKESVLER-----AKETDVEA 62

Query: 72  FVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +  VAGY F N S++    L   S N   N + YI  FS N + I + F+F   I +LE
Sbjct: 63  ILNNVAGYEFSNKSKFDFEKLKNDSDNIETNFKDYIKGFSSNIRTIIDKFEFDKEIKKLE 122

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  LLY + K F+ I+LHP+ V +  M  I+E LIRRF      G  D  TPR+V+ L  
Sbjct: 123 ENNLLYLVVKEFNSIDLHPNVVSNVEMGYIFEELIRRFSENAEAG--DHYTPREVIELMV 180

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQE 246
            L+ +  +   +E  G I T+ D  CGTGG L+ A N++       K+ P   +   GQE
Sbjct: 181 NLIFNGLEDEIREE-GRIFTVGDFACGTGGMLSVATNYI------KKLNPGATVELFGQE 233

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  +++AVC + MLI+   +        NI  G++L+ D    +   + L NPPFG  W+
Sbjct: 234 LNNQSYAVCCSDMLIKGQSAG-------NIAFGNSLTADKHVNRDVQFALMNPPFGVDWK 286

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           KDKDA+++E K    GRFG GLP+ SDGS+LFL H+ +K+      G R AI+ + SPLF
Sbjct: 287 KDKDAIDEEAKKEFNGRFGAGLPRTSDGSLLFLQHMVSKMR-HDEKGSRMAIIFNGSPLF 345

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------RRG 420
            G AGSGESEIRRW++ENDL+E I+ALPTDLF+ T IATY+WI++NRK +       R G
Sbjct: 346 TGDAGSGESEIRRWIIENDLLEGIIALPTDLFYNTGIATYIWIITNRKNDNILNGPVRSG 405

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QLI+AT+ +  +R   G KR  I+D    +I  +Y   +  ++ ++ D + FGY ++ 
Sbjct: 406 KIQLIDATNFYHKMRKSLGSKRNKISDSDITEITRLYGEFKENEYCKIFDNKDFGYLKVT 465

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKL-----------------------SPLHQSF-- 514
           + RPL+++F + +  +  + ++  + KL                       + L + +  
Sbjct: 466 IERPLKLNFQISEERIENIYSESAFSKLYDEDKVEELELKKQKQIIKAKENTELEKQYVG 525

Query: 515 ------WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                  +D+LK  + +   Y   E F KE  K    K  ++  SK    A +     +D
Sbjct: 526 KSIQDNIIDVLKNNIDE-KIYKNREEFDKELSK----KLKRLDLSKPVYKAVLMGLSERD 580

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPY-------------------LESIQDYFVREVSP 609
             AD       +   D++L + E +P                     E+I +Y   EV P
Sbjct: 581 ETADYCYKGKSKE-ADSDLRDTEMIPLSMDVEEYNKKDSSKHIAKEKENILNYLEAEVKP 639

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           HV + +ID    D+K K    +GYEI F R FY+++  R   +I  E++ +E +I T
Sbjct: 640 HVNEYWID----DKKTK----IGYEIPFTRHFYKFEELRPFAEIMKEVEELETEIQT 688


>gi|149373159|ref|ZP_01892028.1| type I restriction-modification [unidentified eubacterium SCB49]
 gi|149354261|gb|EDM42831.1| type I restriction-modification [unidentified eubacterium SCB49]
          Length = 600

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 374/668 (55%), Gaps = 105/668 (15%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNID 68
           A+ IW+ A  L GD+K +D+GKVILP T+LRRL+C L P +  V +   K     G    
Sbjct: 8   ADKIWEVANLLRGDYKRSDYGKVILPMTVLRRLDCVLAPKKQLVLDTLPKVEKLEGETAK 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +     AG +F+N S++    + +   N  +NL +YI  FS +A+ I E F+F   I R
Sbjct: 68  DKVLNATAGMNFHNRSKFDFDKIIADPNNVASNLRNYINGFSTSAREIIEYFNFDDQIDR 127

Query: 127 LE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++  KA +L+++ K F GI+L  +++    M  ++E LIRRF  + +E A +  TPR+V+
Sbjct: 128 MDDPKADILFRVVKAFQGIKL--ESMDSMEMGYVFEDLIRRFAEQSNETAGEHFTPREVI 185

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L + D  +  +  G+++TLYDP CGTGG L+    HV +   + +    L   G
Sbjct: 186 KLMVNMLFNEDSEILTKE-GIVKTLYDPACGTGGMLSVGEQHVKELNPNAE----LKVFG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ PE++A+C + MLI+    +P      N++ G+T + D    ++F Y LSNPPFG  
Sbjct: 241 QEINPESYAICKSDMLIKG--QNP-----SNVKFGNTFTVDGLEDEQFDYMLSNPPFGVD 293

Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  ++ EH+N G  GRFG GLP+I+DGS+LFL H+ +K++     G R AIV + S
Sbjct: 294 WKKAQKIIKAEHENKGMQGRFGAGLPRINDGSLLFLQHMISKMK---PSGTRIAIVFNGS 350

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF+G AGSGESEIR+W++END +EAIVA+P  LF+ T I+TY+W+++N+K E+R+GKVQ
Sbjct: 351 PLFSGSAGSGESEIRKWIIENDWLEAIVAMPDQLFYNTGISTYVWLVNNKKEEKRKGKVQ 410

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           LINAT          K   +I D++    LD+       +F + +D ++ G +R ++   
Sbjct: 411 LINATGT--------KDEELIADEK----LDV------NRFWKKMD-KSLGSKRKEIPEN 451

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
                I    G            +S L+ +F  +    ++   Y +G+    V++ +K  
Sbjct: 452 GNSKGI----GF-----------VSQLYGNFEENEFSKILPNEY-FGYWRVTVEQPLKDE 495

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------- 596
           + + +K K                 P+AD            + L +YEN+P+L       
Sbjct: 496 KGQIVKSKGK---------------PKAD------------SKLRDYENIPFLRTEKDGS 528

Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
              ++I  YF REV+PH+P+A+ID+        +  ++GYEINF ++FY+++P R L DI
Sbjct: 529 LVPQTISAYFEREVTPHLPEAWIDE--------KKTKIGYEINFTKYFYEFKPLRSLTDI 580

Query: 654 DAELKGVE 661
            A++  +E
Sbjct: 581 KADILALE 588


>gi|229163474|ref|ZP_04291425.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus R309803]
 gi|228620043|gb|EEK76918.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus R309803]
          Length = 679

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 360/676 (53%), Gaps = 74/676 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             NFIWKNAE L G +K  ++ +V+LP  +LRR +C L+PT+  V EK        I   
Sbjct: 9   FVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQEVLEKTKVVKHDAI--- 65

Query: 71  SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              K+ GY F N S++   TL     N   NL +YI  FS N + IFE F F + I +++
Sbjct: 66  -LNKITGYDFNNISQFDFQTLLKDPDNIAANLRNYIQGFSVNIRMIFERFGFDTQIQKMD 124

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  LLY + + FSGI+L    V +  M  I+E  IRRF      G  D  TPR+V+ L  
Sbjct: 125 EHNLLYSVIQLFSGIDLSIQRVSNIQMGYIFEEFIRRFSENAEAG--DHYTPREVIQLMV 182

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+L+ D +   +  G I  + D  CGTGG L++A  ++ +   + ++       GQE+ 
Sbjct: 183 NLVLNEDQSELMQE-GKIVQIGDFACGTGGMLSEATRYIQELNPNAQVEVF----GQEIN 237

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-----KDLFTGKRFHYCLSNPPFGK 303
           P+++A+  A +LI+   +        +I  G++L+     KDL    +  Y L NPPFG 
Sbjct: 238 PKSYAIACADLLIKGQNAG-------HIAFGNSLTDADGHKDL----QVRYALMNPPFGV 286

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W+   +++++EH+  G+ GR+G GLP+ SDGS+LFL H+ +K++    G  R AI+ + 
Sbjct: 287 DWKHYGESIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRDEKGS-RMAIIFNG 345

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----- 417
           SPLF G AGSGESEIRR ++E DL+E IVALP  LF+ T I+TY+WILSNRK ++     
Sbjct: 346 SPLFTGDAGSGESEIRRRIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKNDDLIKGA 405

Query: 418 -RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+GK+QL++AT     +R   G KR  I + Q  +I  IY   +  K+ ++ D   FGY
Sbjct: 406 VRKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAEITRIYGEFKENKYCKIFDLEDFGY 465

Query: 476 RRIKVLRPLRMSFIL---------DKTGLARLEADITWRKLSPLHQSFWLDILK------ 520
           R+I V +PL+++F++         ++   A+L  +  + +LS        D+ K      
Sbjct: 466 RKITVEQPLQLNFMISPERIENLYNEAAYAKLYDEEAYTELSRKKDKKPADMKKLEKWEE 525

Query: 521 --PMMQQIYPYGWAESFVKESIKSNEAKTLKV---------KASKSFIVAFINAFGRKDP 569
              + ++I      +  + +++  N    LKV         +       A       +D 
Sbjct: 526 GKQLQEKIL--AILDENISDTLYKNREDFLKVLKPLFNNVPEVKAGLWKAIYMGLSERDE 583

Query: 570 RADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
            AD      G+   D  L + EN+P  E IQ+YF REV PHVPDA+I        D+   
Sbjct: 584 TADVCESAKGKVEADPMLRDTENIPLKEDIQEYFEREVLPHVPDAWI--------DESKT 635

Query: 630 RVGYEINFNRFFYQYQ 645
           ++GYEI F R+FY+Y+
Sbjct: 636 KIGYEIPFTRYFYKYE 651


>gi|315446767|ref|YP_004079646.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315265070|gb|ADU01812.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 578

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/482 (43%), Positives = 290/482 (60%), Gaps = 20/482 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L NF+W  A+ L G +K   +G VILPFT+LRRL+C LEPTR  VRE    + G  +D
Sbjct: 2   SKLGNFVWGIADQLRGVYKPHQYGGVILPFTILRRLDCTLEPTREEVRELAEKYSGGALD 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           ++   K  G +FYNTS +    L       R NL  YI  FS N   +FE F F + +A 
Sbjct: 62  VQVKRKT-GLAFYNTSPFDFKLLLKDPEGLRANLMDYITGFSANID-VFERFKFENELAT 119

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   LY +   F+ ++LHP++V +  M +++EHLI +F    +E A +  TPRD + L
Sbjct: 120 LDEKNRLYLVTSQFAEVDLHPNSVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIRL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   D+    E PG +RT+YDPT GTGG L+ A   + +     +    L  +GQE
Sbjct: 180 MVDLLFAEDNVALLE-PGTVRTIYDPTAGTGGMLSVAEERLLERNPGAR----LRLYGQE 234

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           +  +++A+C + M+ +       +D+  NI+ G TL  DLF  + F +C+SNPP+G  W+
Sbjct: 235 INDQSYAICKSDMIAKG------QDVG-NIKLGDTLEDDLFFDRTFDFCMSNPPYGVDWK 287

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             + +V+KE       RF  GLP I DG MLFL HLA+K+    +GGGRA IVL+ SPLF
Sbjct: 288 ASQKSVKKEALASN-SRFSHGLPSIGDGQMLFLSHLASKMRPAHDGGGRAGIVLNGSPLF 346

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           NG A SG S IR+WLLE DL+EAIVALPT++FF T IATY+WIL N K  ER GK+QLI+
Sbjct: 347 NGAAESGPSLIRQWLLETDLLEAIVALPTNMFFNTGIATYIWILDNAKRTERAGKIQLID 406

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLRP 483
           AT  WT +R   G K R ++ D R QIL +Y S + G   +S++     FGY  + V RP
Sbjct: 407 ATSFWTKMRKSLGSKNRELDADARDQILALYDSFDEGDPDYSKVFTANDFGYWSVTVERP 466

Query: 484 LR 485
           LR
Sbjct: 467 LR 468



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 20/109 (18%)

Query: 575 TDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDAYIDKIFID 622
           TD  G   PD  L + EN+P+             E+I+ YF  EV PHVPDA++D     
Sbjct: 476 TDRKGNPKPDAKLRDTENIPFTYGGNTAGDAARAETIEAYFEAEVLPHVPDAWVDVAKT- 534

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                  +VGYEI F R FY+Y P R L +ID++L    A+I  LL E+
Sbjct: 535 -------KVGYEIPFARHFYKYVPPRPLAEIDSDLDKQVAKILELLREV 576


>gi|149280203|ref|ZP_01886326.1| type I restriction-modification system methyltransferase subunit
           [Pedobacter sp. BAL39]
 gi|149229040|gb|EDM34436.1| type I restriction-modification system methyltransferase subunit
           [Pedobacter sp. BAL39]
          Length = 633

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 242/661 (36%), Positives = 360/661 (54%), Gaps = 62/661 (9%)

Query: 39  TLLRRLECALEPTRSAVREKY----LAFGGS---NIDLESFVKVAGYSFYNTSEYSLSTL 91
           T+LRR +  LE ++S V +++    + + G    +I      K+ G  FYNTS ++   L
Sbjct: 2   TVLRRFDSVLENSKSDVLQEFESLKVRYKGEIPPSILSSKLEKITGQKFYNTSPFTFEKL 61

Query: 92  GST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                +   +L SYI  FS N + IFE FDF   I  +  A +LY I   F+ + LHP  
Sbjct: 62  KGAPDSIAQDLVSYINGFSPNVRRIFEYFDFEKEIFAMNDANILYLIVSEFAKVNLHPSL 121

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           V +R M  I+E+LIRRF    +E A D  TPR+++ L   LL   DD   ++   + R +
Sbjct: 122 VSNRDMGLIFENLIRRFNELANETAGDHFTPREIIKLMVNLLFVDDDKFLRDKYHL-RKI 180

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DPTCGTGG L++A N++    S      IL+ +GQE     +A   + +LI+   SD  
Sbjct: 181 LDPTCGTGGMLSEAKNYLKQNNSD----IILLTYGQEYNKRAYATAASDLLIKGRSSDKV 236

Query: 270 RDLSK---NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               +    I+ G TL++D F    F Y ++NPPFG  W+K K  ++++    + GRF  
Sbjct: 237 GKYEQAEGEIKFGDTLTEDQFEDDTFDYLIANPPFGVDWKKQKPQIDRD----KTGRFEA 292

Query: 327 GLPKISDGSMLFLMHLANKLE--LPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           GLP+++DG++LFL H+ +K E   P N   G R AIV S SP+F+G AGSGES+IR+W++
Sbjct: 293 GLPRVNDGALLFLQHMISKFEPYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWII 352

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKR 441
           END +E I+ALP  +F+ T I TY+W+L+NRK++ R+GK+QL +A + +  +R ++G KR
Sbjct: 353 ENDWLEGIIALPEQMFYNTGINTYIWVLTNRKSKNRKGKIQLFDAREFYIQMRKSQGSKR 412

Query: 442 RIIND-------------DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           R I +             +Q  +I+  Y   +N   +++ D   FG+ R+ V RPLR+ +
Sbjct: 413 RKIGEGEVDDGIIHVMEPNQIAEIITEYGQFDNTTNAKLFDNEDFGFTRVTVERPLRLKY 472

Query: 489 ILD-KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
            +  +  LA L+A        P        I K + Q+I    W +  V + IK    K 
Sbjct: 473 QMTAERKLAFLDA-------CPHLLDDVQTIDKKLGQEIL-MDWNK--VLKDIK----KI 518

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
            + K S   +V F N F  KDP A  V     ++  D +L E+ENVP    I  YF  EV
Sbjct: 519 SEQKWSARELVIFRNVFTDKDPEAAKVQKGKNDFEADADLREFENVPLKIDIDTYFKNEV 578

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            P  PDA+ D+     KDK    VGYEINFNR+F++   +R L+ I+ EL  +E +I  L
Sbjct: 579 LPFAPDAWTDR----SKDK----VGYEINFNRYFFKNAENRSLKVINKELSEIEKEILEL 630

Query: 668 L 668
           L
Sbjct: 631 L 631


>gi|189485040|ref|YP_001955981.1| type I restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170286999|dbj|BAG13520.1| type I restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 570

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/530 (39%), Positives = 312/530 (58%), Gaps = 24/530 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S +  ANFIW  A+ L GDFK +++G+VILPFT+LRR +C L P +  + E       +N
Sbjct: 3   SFSDKANFIWSVADLLRGDFKQSEYGRVILPFTVLRRFDCVLAPHKDRILEINKTLTVTN 62

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                F +  GY +YN S++S   L   S     NL  YI+ FSD+ +AI ++F+   TI
Sbjct: 63  -KAPVFKRCTGYDYYNISKFSFEKLRDDSNAVETNLRDYISGFSDDIRAILDNFEIGITI 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL+KA LLY I + F+ ++L   ++ +  M  ++E LIR+F  + +E A +  TPR+V+
Sbjct: 122 KRLKKANLLYLIVQKFAELDLDEKSIDNLTMGYMFEDLIRKFSEKSNETAGEHFTPREVI 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   LLL+ D  +   + G +  +YDP CGTGG LT A   + +     K+    +P G
Sbjct: 182 ELMVDLLLEEDGDILN-TEGKVIKVYDPACGTGGMLTAAQKKLQEYNGKIKV----IPFG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL PET+A+C + M I+        +    I  G++ S+D F  ++F Y LSNPPFG +
Sbjct: 237 QELNPETYAICKSDMSIKG-------NSQAGIVLGNSFSEDGFKDEKFDYMLSNPPFGVE 289

Query: 305 WEKDKDAV-EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  + ++  K G  GRFG G P+ISDGS+LFL ++ +K+    +GG R AIV + S
Sbjct: 290 WKKVQSFILDEAEKQGFNGRFGAGTPRISDGSLLFLQNMISKMIPQKDGGSRIAIVFNGS 349

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIR+W++END +EA++ LP  LF+ T IATY+WILSNRK++ R+GK++
Sbjct: 350 PLFTGDAGSGESEIRKWIIENDFLEAVIGLPDQLFYNTGIATYIWILSNRKSDRRKGKIR 409

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           L+N    +  +R   G KR  I+D  R  ++++Y   E  +     D   FGY++I + R
Sbjct: 410 LVNGVSFFEKMRKSLGNKRNEISDKSRNALVNLYSMHEPDENYIDFDNSDFGYKKITIDR 469

Query: 483 PL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
           PL        LDK G  +  A++   +  PL +    D+ +   +++ PY
Sbjct: 470 PLYDKDGKPELDKKGNKKPNAELRDIETVPLKE----DVNEYFKREVLPY 515



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D    P  D  G   P+  L + E VP  E + +YF REV P+VP A+I        D+ 
Sbjct: 473 DKDGKPELDKKGNKKPNAELRDIETVPLKEDVNEYFKREVLPYVPGAWI--------DES 524

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             + GYEI F R FY++ P R  Q+I  E++ ++  I    +E+
Sbjct: 525 KTKTGYEIPFTRHFYKFVPLRSSQEIMKEIECLKKDIDEAFQEL 568


>gi|238761819|ref|ZP_04622793.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638]
 gi|238699933|gb|EEP92676.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638]
          Length = 756

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/520 (42%), Positives = 304/520 (58%), Gaps = 75/520 (14%)

Query: 34  VILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSL 88
           +ILPFTLLRRLEC L PT+ AV  +      S +  E   K       G SF+NTS   L
Sbjct: 1   MILPFTLLRRLECVLAPTKDAVVAEAEKLKTSPLPEEGREKFLLRATKGLSFFNTSPMDL 60

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             +G  + R NL++Y+  FS +A+ IFE F F+  +  L+ A LL+KI K F+  +L P+
Sbjct: 61  GKIGQNDIRANLDNYVQCFSKDAREIFEHFKFTEFVGLLDDANLLFKIVKKFATTDLSPN 120

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIR 207
            + +  M  ++E LIRRF    +E A +  TPRD+V L T+L+ ++ +DAL K+  G+IR
Sbjct: 121 AISNYEMGLVFEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDNDALSKD--GIIR 178

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLE 265
           T+YDPT GTGGFL+  M +V      H++ P  ++   GQEL PE++A+C A MLI+   
Sbjct: 179 TIYDPTAGTGGFLSSGMEYV------HELNPNAVMRAFGQELNPESYAICKADMLIKG-- 230

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRF 324
               +D+S+ I+ G+TLS D     +F Y LSNPPFG  W+K +  +  EH+  G  GRF
Sbjct: 231 ----QDVSR-IKLGNTLSNDQLPQDQFDYMLSNPPFGVDWKKIEGEINDEHQLKGFNGRF 285

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIR 378
           GPGLP++SDGS+LFLMHL +K+    N       GGR  I+L+ SPLF G AGSGESEIR
Sbjct: 286 GPGLPRVSDGSLLFLMHLISKMRDNHNLDGSVSNGGRIGIILNGSPLFTGGAGSGESEIR 345

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE- 437
           R++LE DL+E IVALPTD+F+ T IATY+WILSN+KT ER+ KVQLI+ T+L   +R   
Sbjct: 346 RYILEADLLEGIVALPTDMFYNTGIATYVWILSNKKTPERKDKVQLIDGTNLCGKMRKSL 405

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKF--------------------------------- 464
           G KR I+ +D  +      ++R  G F                                 
Sbjct: 406 GSKRNIMGEDDIK-----LITRTFGDFEVVETTTLEALGLEKAPEQKSNRGRQSATAKIE 460

Query: 465 ------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                 S++ +   FGYRR+ + RPLR+S  +    +A L
Sbjct: 461 APKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEAIATL 500



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 79/150 (52%), Gaps = 24/150 (16%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVT---------------DVNG---EWIPDTNL 587
           KT  VK        FI+A   K+P A+PV                +  G   E+  D  L
Sbjct: 605 KTAGVKLDTKENKQFIDAITTKNPDAEPVVKKILKEAVQPLYGAFEYQGKVVEFEQDGEL 664

Query: 588 TEYENVPYLESI------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            + ENVP   +I      ++YF  EV PHV DA+I+    D KD EIG VGYEI FNR F
Sbjct: 665 RDNENVPLNPAIATSDLIENYFKAEVLPHVADAWINADKRDAKDGEIGIVGYEIPFNRHF 724

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 725 YVYQPPRPLEEIDADLDAVSAEIMKLLQEV 754


>gi|229198632|ref|ZP_04325334.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus m1293]
 gi|228584914|gb|EEK43030.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus m1293]
          Length = 679

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/700 (34%), Positives = 362/700 (51%), Gaps = 70/700 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             NFIWKNAE L G +K  ++ +V+LP  +LRR +C L+PT+  V E+        I   
Sbjct: 9   FVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQQVLERAKVVKHDAI--- 65

Query: 71  SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              K+ GY F NTS++   TL     N   NL +YI  FS + + IFE F F + I +++
Sbjct: 66  -LNKITGYDFNNTSQFDFQTLLKDPDNIAANLRNYIQGFSVDIRTIFERFGFDTQIQKMD 124

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  LLY + + FSGI+L    V +  M  I+E  IRRF      G  D  TPR+V+ L  
Sbjct: 125 EHNLLYSVVQVFSGIDLSIQRVSNIQMGYIFEEFIRRFSENAEAG--DHYTPREVIQLMV 182

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+L+ D +   +  G I  + D  CGTGG L++A  ++ +   + ++       GQE+ 
Sbjct: 183 NLVLNEDQSELMQE-GKIVQIGDFACGTGGMLSEATRYIQELNPNAQVEVF----GQEIN 237

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEK 307
           P+++A+  A +LI+   +        +I  G++L+  D     +  Y L NPPFG  W+ 
Sbjct: 238 PKSYAIACADLLIKGQNAG-------HIAFGNSLTNTDGHKDLQVRYALMNPPFGVDWKH 290

Query: 308 DKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             + +++EH+  G+ GR+G GLP+ SDGS+LFL H+ +K++    G  R AI+ + SPLF
Sbjct: 291 YGEGIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRDEKGS-RMAIIFNGSPLF 349

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------RRG 420
            G AGSGESEIRRW++E DL+E IVALP  LF+ T I+TY+WILSNRK ++      R+G
Sbjct: 350 TGDAGSGESEIRRWIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKNDDLVKGAVRKG 409

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QL++AT     +R   G KR  I + Q   I  +Y   +  ++ ++ D   FGY +I 
Sbjct: 410 KIQLVDATSFAEKMRKSLGNKRNEITEPQIAGITRMYGEFKENEYCKIFDLEDFGYHKIT 469

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKL----------------------------SPLH 511
           V RPL+++F++    +  L  + T+ KL                              + 
Sbjct: 470 VERPLQLNFMISPKRIENLYNEATFAKLYDKEAYTELSRKKDKKPADMKKLEKWDEGKML 529

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
           Q   L IL+  +     Y   E F+K  +K       +VKA      A       +D  A
Sbjct: 530 QEKILAILQENISDTL-YKNREDFLK-GLKPLFKNVPEVKA--GLWKAIYMGLSERDEIA 585

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           D   D   +   D  L + EN+   E IQ+YF REV  HVPDA+I        D+   ++
Sbjct: 586 DVCKDTKRKVEADPTLRDTENISLKEDIQEYFGREVLTHVPDAWI--------DESKTKI 637

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI F R+FY+Y+       +      +E  I  LL+++
Sbjct: 638 GYEIPFTRYFYKYEQLESSSVLKQRAIQLEENIQELLKKV 677


>gi|268325015|emb|CBH38603.1| putative type I restriction enzyme, M subunit [uncultured archaeon]
          Length = 573

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/481 (43%), Positives = 294/481 (61%), Gaps = 25/481 (5%)

Query: 12  ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           ANFIW+ A+D L G FK  ++G+VILPF +LRRL+C LE  + AV      F     D  
Sbjct: 8   ANFIWQVADDILRGTFKQHEYGEVILPFVVLRRLDCVLEEHKDAVIATNNKFKDVLPDPA 67

Query: 71  SFVKVA--GYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             +  A  G +FYNTS Y L  L   + N   N  +YI  +S N + + E+F     +A+
Sbjct: 68  QVLLHATNGLNFYNTSYYDLRRLAQDAGNVELNFNNYINGYSANVREMIENFQIDKIVAK 127

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L K  L++ +   F+ I+LHPD V +  M  I+E L+RRF    +E A +  TPR+V+ L
Sbjct: 128 LVKNDLMFMLVAKFTEIDLHPDVVANHEMGYIFEELLRRFSEMSNETAGEHYTPREVIRL 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHG 244
              LL     A   +  G+IRT++DP CGTGG LT A  H+       KI P   +V +G
Sbjct: 188 MVNLLFAEHQAEL-QGKGIIRTVFDPACGTGGMLTIAKEHI-----QQKINPDVEIVMYG 241

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL  +T+A+  + +LI   E+D       NI+ G++ S+D F G +F+Y LSNPPFG  
Sbjct: 242 QELNEQTYAIAKSDVLIMGEEAD-------NIRPGTSFSEDKFKGNKFNYMLSNPPFGVS 294

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W+K+++ + K+  N   GRF  GLP++SDG+++FL H+ +K+E  P G  R AI+ + SP
Sbjct: 295 WKKEQEFI-KDEANDPYGRFHAGLPRVSDGALMFLQHMISKME--PRGS-RIAIIFNGSP 350

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGES IR+W++END +EAI+ALPT+LF+ T IATY+WI+SNRK E+R GKVQL
Sbjct: 351 LFTGDAGSGESNIRKWIIENDWLEAIIALPTELFYNTGIATYIWIVSNRKPEKRIGKVQL 410

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA   +  +R   G KR  +++ Q +++  IY   E G+  ++ D   FGY +I V RP
Sbjct: 411 INAVGYYKKMRKSLGNKRNYVSEAQIQELTGIYSQFEEGENCKIFDNDYFGYNKITVERP 470

Query: 484 L 484
           L
Sbjct: 471 L 471



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 8/89 (8%)

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           PDT+L +YE VP +E + +YF REV PHV DA++D+     KDK    VGYE+NF ++FY
Sbjct: 487 PDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMDR----SKDK----VGYELNFTKYFY 538

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +Y+P R L++I A++  +E +   LL+E+
Sbjct: 539 EYKPLRALKEIKADILALEGETEGLLKEI 567


>gi|330469018|ref|YP_004406761.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
 gi|328811989|gb|AEB46161.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
          Length = 581

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/492 (42%), Positives = 292/492 (59%), Gaps = 24/492 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +FIW  A+ L G ++   +G VILP T+LRRL+  LEP R  VR     +   N  
Sbjct: 2   STLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDYILEPDRELVRALAAKYDNPNRL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K  G  FYNTS YS + L   +    +NL  YI  FS +   +F+ FDF   I  
Sbjct: 62  KIEVKKATGRPFYNTSNYSFANLLADADGLADNLADYIDRFSPDVD-VFQYFDFKKEILA 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKA LL ++  +F  + LHPD V +  M + +E++IR+F    +E + D  TPRD + L
Sbjct: 121 LEKAELLREVITSFKAVNLHPDVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    DA   E+  ++R+LYDPT GTGG L  A  H+       K    L  +GQE
Sbjct: 181 LVDLLFAERDAELTEA-DIVRSLYDPTAGTGGMLALAEEHLLAQNPGAK----LRLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P+++A+C + +L +  ++        NI  G+TL+   F  ++F +C+SNPP+G  W+
Sbjct: 236 YNPQSYAICKSDLLAKGHDT-------TNIAFGNTLTDPAFKDRKFDFCMSNPPYGVDWK 288

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +   AV KE  + G  GRF PGLP  SDG MLFL+HL +K+  P +GGGRA IV++ SPL
Sbjct: 289 QYAKAVTKERDEAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRAGIVMNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG A SG S IR+WLLE+DL++AIVALPT++FF T IATY+WIL N K  +R+G VQLI
Sbjct: 349 FNGAAESGPSNIRKWLLEHDLVDAIVALPTNMFFNTGIATYIWILDNTKHPDRKGLVQLI 408

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLR 482
           + T  WT +R N G K R ++++ R +++ +Y    +G   +S++L    FGY  I V R
Sbjct: 409 DGTSFWTKMRKNLGAKNRELSEENRAKVVQLYADFTDGDPDYSKVLRNDEFGYWTITVER 468

Query: 483 PLRMSFILDKTG 494
           PL     LD++G
Sbjct: 469 PL-----LDESG 475



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 62/116 (53%), Gaps = 20/116 (17%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPY------------LESIQDYFVREVSPHVPDAY 615
           D   +PV D  G+  PDT   + ENVP+            +E IQ YF  EV PHVPDA+
Sbjct: 472 DESGNPVVDRKGKPKPDTKKRDTENVPFTYGGSTAGAAGKIEVIQAYFDVEVKPHVPDAW 531

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ID   +        + GYEI F R FY+Y P R L +IDA+L+   A+I  LL E+
Sbjct: 532 IDWTKV--------KTGYEIPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579


>gi|172040758|ref|YP_001800472.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852062|emb|CAQ05038.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 644

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/669 (34%), Positives = 353/669 (52%), Gaps = 49/669 (7%)

Query: 15  IWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNID 68
           +W  A+  L    +  D+G  ILP T+LRRLEC LEPT+  V +     +   +    ID
Sbjct: 11  VWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILEPTKGEVLDLVEILQEEGYSEEMID 70

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            E  V+  G SFYN+S   L+ +   +      L  Y+ +FS + + +++ FDF+  +  
Sbjct: 71  WEVRVRF-GLSFYNSSRLDLTRIAQLDDHVYEALMDYVGAFSSSVRDVWDAFDFAVKMKT 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LE A  L+ + K+F+ I++  D +PD  M +++EH++ +      + A  F TPRD + L
Sbjct: 130 LENASRLWPVVKHFATIDMSLDALPDAQMGDLFEHVMYKAFDTKGKAAGAFYTPRDAIRL 189

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L   DD     + G  RT+YDPT GTGG L  A   + +     ++    V  GQE
Sbjct: 190 MVDILFASDDVGLT-AEGASRTVYDPTAGTGGMLLVAARALKELNPDIEV----VLAGQE 244

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L    +A+  A +LI+  E D        I+ G TL  DL+ G++F Y LSNPPFG  WE
Sbjct: 245 LMSTGYAIGKADLLIQGGEPD-------AIRHGDTLLTDLYEGEQFEYILSNPPFGTDWE 297

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNG-GGRAAIVLSSS 363
             + +V KE       RF  GLP   DG MLFL H+A+KL +P  PNG GGR A+V + S
Sbjct: 298 VQQQSV-KEQAKVPGSRFSHGLPSKDDGQMLFLAHVASKL-MPAGPNGAGGRGAVVSNGS 355

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G   SG  +IR WLLENDL++AI+ LPT++F+ T I+TY+WIL   K E R+G VQ
Sbjct: 356 PLFTGAPESGPDKIRAWLLENDLVDAIIQLPTNMFYGTGISTYVWILDTNKEEHRKGFVQ 415

Query: 424 LINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+A++ W+   +  G+KRR + +  R+++L+ Y + E+ + S++L     G+R +KV +
Sbjct: 416 LIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAAFEDTEISKVLTPADLGFRDVKVTK 475

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
             R+   +    +A++   +  +   P H     D+       +           E++K+
Sbjct: 476 QKRLRVAVTPEAVAQV---LEHKSAVPEHAEVLADVADVKFNDL----------PEALKA 522

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
             AK   VK     I A + A G  D  A+P  D  G  I D   +  E +P  E + ++
Sbjct: 523 A-AKKRGVKMLAGMIDAVLEAVGVPDENAEPSVDRKGNPILDPAFSMTERIPLTEDVGEH 581

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             REV P  PD           D+E  +VGYEI F R FY+  P R L++IDA++  V  
Sbjct: 582 MTREVLPFAPDVTW--------DEEAAKVGYEIPFKRVFYRPTPVRSLEEIDADVAAVMG 633

Query: 663 QIATLLEEM 671
           ++A    E+
Sbjct: 634 RLAEKFAEV 642


>gi|309812882|ref|ZP_07706614.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
 gi|308433160|gb|EFP57060.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
          Length = 650

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 231/685 (33%), Positives = 364/685 (53%), Gaps = 74/685 (10%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
           F+WK A+ L G F+  ++G+V+LP  +LRR++  L  T+ AV  K   F          +
Sbjct: 13  FVWKVADTLRGTFRQHEYGQVMLPLLVLRRMDAVLVDTKPAVLAKAKTFETIAAPQAMML 72

Query: 74  K-VAGYSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
           K VAG  FYN S ++ ++L S +     NL +YI   S +A  + E ++    IAR+++A
Sbjct: 73  KKVAGQRFYNISRFTFTSLLSDDKALAENLSNYIRGLSSDAYVVMEAYNLDDKIARMDRA 132

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           G+LY++  +F+ ++L P  V +  M  I+E L+RRF    +E A +  TPR+V+ L   L
Sbjct: 133 GILYRVLADFADLDLRPSVVSNEAMGYIFEDLLRRFSEMSNETAGEHYTPREVIRLMVEL 192

Query: 191 LLDPDDAL-FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L+  +      E+P  +RT+YDP  GTGG L  AM H+       ++      +GQEL  
Sbjct: 193 LVGGEAHRELVENPLPVRTVYDPAAGTGGMLMTAMEHMRALNPETEVKV----YGQELND 248

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           ET A+  + ++++ +  DP     K ++ G++L++D F  + F + L+NPP+G  W    
Sbjct: 249 ETWAIAQSDLMMQDI--DP-----KQMRNGNSLTQDAFGAEHFDFILANPPYGVNWAGYA 301

Query: 310 DAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             +++EH K G  GRFG GLP+ SDGS+LFL H+ +K++  P G  R  IVLS SPLF+G
Sbjct: 302 APIKEEHAKQGMNGRFGAGLPRSSDGSLLFLQHMLSKMK--PTGS-RVGIVLSGSPLFSG 358

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            A SGES IR+W+LEND +E IVALP  +F+ T I+TY+WIL+N K +  RG V+L++A 
Sbjct: 359 AADSGESRIRQWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKADADRGLVKLVDAR 418

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSR----ENGKFSRMLDYRTFGYRRIKVLRP 483
            + T +R   G KR+ +  D   +I  +Y       ++    ++L    FG++RI V RP
Sbjct: 419 AMGTKMRKSLGDKRKELTADAIAEIGRLYGGALDEVDDDARIKVLPREAFGFQRITVERP 478

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           +R  + +    +A           +P       D+  P++ Q         F  E     
Sbjct: 479 MRRRWEVTTEAVAD----------AP------FDVFAPLVGQ--------RFQTEKALLA 514

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--------- 594
           EA  +  K + +    F  A    DP A P+    G+  PD +L + ENVP         
Sbjct: 515 EADAI-TKLTAAQRKKFATACAVADPDA-PIVTKKGQAEPDPDLRDAENVPLPDGWFSLD 572

Query: 595 -------YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
                    E+ + +   E+ P+VPDA+ID            ++G EI F R FY Y+P 
Sbjct: 573 PDARETALRETAEAHLESEIRPYVPDAWIDHTKT--------KIGVEIPFTRQFYVYEPP 624

Query: 648 RKLQDIDAELKGVEAQIATLLEEMA 672
           R +++I AE++ +E QI   ++++ 
Sbjct: 625 RPVEEIAAEIRDLETQIQGWMKDLG 649


>gi|111026978|ref|YP_708956.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus jostii RHA1]
 gi|110825517|gb|ABH00798.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus jostii RHA1]
          Length = 578

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 206/492 (41%), Positives = 295/492 (59%), Gaps = 25/492 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L NF+W  A+ L G +K   +G VILPFT+LRRL+C LEPTR  VR     +    +D
Sbjct: 2   SKLGNFVWGIADQLRGVYKPHQYGGVILPFTVLRRLDCILEPTRDEVRALATKYADGALD 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           ++   K  G +FYNTS +    L       R NL  YI  FS N   +FE F F + +A 
Sbjct: 62  VQVKRKT-GLAFYNTSPFDFKHLLEDPEGLRANLVDYITGFSANID-VFERFKFENELAT 119

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   LY +   F+ ++LHPD V +  M +++EHLI +F    +E A +  TPRD + L
Sbjct: 120 LDEKNRLYLVTSQFADVDLHPDVVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIRL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   D+A   E PG +RT+YDPT GTGG L+ A   + +     +    L  +GQE
Sbjct: 180 MVDLLFAEDNAALLE-PGTVRTIYDPTAGTGGMLSVAEERLLERNPDAR----LRLYGQE 234

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           +  +++A+C + M+ +       +D+  NI+ G TL++D F  + F +C+SNPP+G  W+
Sbjct: 235 INDQSYAICKSDMIAKG------QDVG-NIKLGDTLAEDQFFDRTFDFCMSNPPYGVDWK 287

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             ++AV+KE    +  RF  GLP + DG MLFL HLA+K+    +GGGRA IVL+ SPLF
Sbjct: 288 ASQEAVKKEAL-AQNSRFSHGLPAVGDGQMLFLSHLASKMRPKHDGGGRAGIVLNGSPLF 346

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           NG A SG S+IR+WLL++DL+EAI+ALPT++FF T IATY+WIL N K  ER GKVQLI+
Sbjct: 347 NGAAESGPSKIRQWLLKSDLVEAIIALPTNMFFNTGIATYIWILDNTKRPEREGKVQLID 406

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLRP 483
           AT  W+ +R   G K R ++   R +IL +Y + +     +S++     FGY  I V +P
Sbjct: 407 ATPFWSKMRKSLGAKSRELDAGARDRILALYDAYDEADPAYSKIFTSDDFGYWTITVEQP 466

Query: 484 LRMSFILDKTGL 495
           L     LD+ G+
Sbjct: 467 L-----LDEDGM 473



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 23/109 (21%)

Query: 573 PVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDAYIDKIF 620
           PVTD +G   PDT   + EN+P+              +I+ YF  EV PHV DA+ID   
Sbjct: 474 PVTDRSGNPKPDTKKRDTENIPFTYGGNTEGEAGRTATIKAYFEAEVLPHVHDAWIDA-- 531

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
                 +  R+GYEI F R FY+Y P R + +IDA+L   E Q+A ++E
Sbjct: 532 ------KKTRIGYEIPFTRHFYKYVPPRPIAEIDADL---EKQVAKIME 571


>gi|158520293|ref|YP_001528163.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509119|gb|ABW66086.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 569

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 283/479 (59%), Gaps = 23/479 (4%)

Query: 12  ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           ANFIW+ A+D L G FK  ++G VILPF + RRL+C L   +  + + Y  F     D  
Sbjct: 8   ANFIWQVADDILRGTFKQHEYGDVILPFVVFRRLDCVLNGKKDEIIDTYKKFQKKLDDPS 67

Query: 71  SFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           + V     G  FYN S Y L  L   + N   N  +YI  +S N + I ++F     IA+
Sbjct: 68  AVVLQATGGLKFYNVSLYDLQRLTQDAGNIEANFNNYINGYSKNVREIIDNFSIEKIIAK 127

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L K  LL+ +   F+ I+LHPD V +  M  I+E L+RRF    +E A +  TPR+V+ L
Sbjct: 128 LAKNELLFMLVDKFTEIDLHPDKVKNHEMGYIFEELLRRFSEMSNETAGEHYTPREVIRL 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQ 245
              LL        K   G++R++YDP CGTGG LT    H+      H  P + ++  GQ
Sbjct: 188 MVNLLFAEQKEELK-GKGIVRSVYDPACGTGGMLTITKEHI----QKHINPKLEVILFGQ 242

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +T+A+  + +L+   E D       NI+ G++ S D F  KRF++ LSNPPFG  W
Sbjct: 243 ELNEQTYAIAKSDVLMTGGEPD-------NIKLGTSFSNDQFRDKRFNFMLSNPPFGVSW 295

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +K++  +  E ++   GRF  GLP++SDG+MLFL H+ +K+E  P G  R AI+ + SPL
Sbjct: 296 KKEQSFINNEAEDPG-GRFHAGLPRVSDGAMLFLQHMISKME--PTGS-RIAIIHNGSPL 351

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGES IR+W++E+D +EAIVALPT+LFF T IATY+WI++NRK   RRGKVQL+
Sbjct: 352 FTGDAGSGESNIRKWIIESDWLEAIVALPTELFFNTGIATYIWIVTNRKPAHRRGKVQLV 411

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           NA      +R   G KR  I  +Q +QI DIY   ++G+F ++ D   FG+ ++ V RP
Sbjct: 412 NAVSFAQKMRKSLGSKRNFITTEQIQQITDIYTGFKDGEFCKVFDNEDFGFTKVTVERP 470



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 8/100 (8%)

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           V D NG   PDT+L +YE +P    I +YF REV PHVPDA++D+     KDK    VGY
Sbjct: 478 VKDKNGNPKPDTSLRDYEKIPLKVDIDEYFKREVLPHVPDAWMDR----SKDK----VGY 529

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           EINF ++FY+YQP R L +I A++  +E +   LL E+ +
Sbjct: 530 EINFTKYFYKYQPLRSLDEIKADILALEKETDGLLSEVLS 569


>gi|310778851|ref|YP_003967184.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926]
 gi|309748174|gb|ADO82836.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926]
          Length = 996

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 254/747 (34%), Positives = 383/747 (51%), Gaps = 104/747 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-D 68
           + ++IW  A+D+  D F    +  VILPFT+LRR++  LE ++  V E    F  +NI D
Sbjct: 265 IVSYIWSIADDVLRDIFVRGKYRDVILPFTVLRRIDILLEESKEKVLEMNKFFEENNIND 324

Query: 69  LESFVKVAGYSFYNTS------------EYSLSTLGSTNTR--NNLESYIASFSDNAKAI 114
                K+ GY FYNTS            EY   +L S   +  +NLE Y+  FS N + I
Sbjct: 325 KSGLEKITGYPFYNTSPFTMGKNSLKDSEYPFVSLLSDPDKIDSNLEEYLDGFSPNIQEI 384

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEH 161
              F   + +  ++ AG+ + +    +   I L P  V +             M  ++E 
Sbjct: 385 ISKFKVRNQLETMQDAGITFGLIDKLTSGSINLSPYEVKNSKGEILPALTNLGMGYVFEE 444

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIR+F  E +E A +  TPR+++ L T ++ +P   + KE  G   ++YDP CG+GG LT
Sbjct: 445 LIRKFNEENNEEAGEHFTPREIIKLMTHIIFEPIKDILKEREGARFSIYDPACGSGGMLT 504

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +A +       +  I  +    GQE+ PET A+C   MLI+        + + NI  GST
Sbjct: 505 EAEDFALKITDNKCIFSLF---GQEVNPETWAICTGDMLIKG-------EKASNIGYGST 554

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDA-VEKEHKNGEL----GRFGPGLPKISDGSM 336
           LS D F G +F + LSNPP+GK W+ D DA VE   K G+      RF  GLP ISDG +
Sbjct: 555 LSNDEFKGHKFDFILSNPPYGKSWKNDVDAIVENRGKKGKEIIKDPRFKVGLPTISDGQL 614

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL+++ +K++     G R A V + S LF G AG GESEIR+ +LENDL+E I+AL T+
Sbjct: 615 LFLVNMISKMKNDTELGSRIASVHNGSSLFTGDAGQGESEIRKMILENDLLECIIALSTN 674

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           +F+ T I TY+WILSNRK E R+GKVQLINA D++T +R N G+K   +   Q   I  I
Sbjct: 675 IFYNTGIPTYIWILSNRKEERRKGKVQLINAIDIYTPLRKNLGQKNCELTKTQIDSITKI 734

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRM----------SFILDKT------------ 493
           Y+  +  + S++ D   FGY +I V RPLR+          S   +KT            
Sbjct: 735 YLDFKKTETSKIFDNEDFGYNKIIVERPLRLKAKITNEAIESLRYEKTIIDEAKWIYRKY 794

Query: 494 ------GLARLEADI-TW-----RKLSPLHQ------SFW------LDILKPMMQQIYPY 529
                 GL  ++ DI  W      K+SP ++      + W      + I + ++++I   
Sbjct: 795 GDKVYDGLKDVKKDIENWIEKNEIKISPANKKKIFDVNVWKSQEELMKITEQLLEEIGEI 854

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV---TDVNGEWI--PD 584
            +      + +  +    L +K  K  +    NA   KD   +PV    + +G  I   D
Sbjct: 855 EFDNFNTFKDLIGDTLNKLDIKIGKKDLDLIFNAITWKDEEGEPVIKKVEKDGTIIYEAD 914

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E+VP  E I +YF REV  ++PDA+I        D+   + GY I+F R+FY +
Sbjct: 915 SDLRDSESVPLNEDIHEYFEREVLNYIPDAWI--------DESKTQKGYSISFTRYFYNF 966

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
            P R L+ I +E++ ++ +   ++EE 
Sbjct: 967 TPPRSLEAIASEIEKLQEETEGIMEEF 993


>gi|52426220|ref|YP_089357.1| HsdM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308272|gb|AAU38772.1| HsdM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 732

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 245/735 (33%), Positives = 372/735 (50%), Gaps = 91/735 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---YLAFGGS 65
           +++++ IW  A  L G ++   + +V+LP  +L R +  L P   A++ K     A GG 
Sbjct: 11  STISSVIWSMANMLRGTYRPPQYRRVMLPLIVLARFDAILAPYTDAMKAKADELQAMGGK 70

Query: 66  NIDLE----SFVKVAG----YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115
             +      +  K A        YNTS Y+L  L     +   NL  Y+  FS  AK IF
Sbjct: 71  APEGALYEMALTKAADPNRKQPLYNTSGYNLQRLLADQDHIAANLVKYLQGFSAKAKDIF 130

Query: 116 EDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + F+F + I +L+ +  LY +   F      +GI+L P ++ +  M  I+E L+R+F  +
Sbjct: 131 DKFEFENEIEKLDSSNRLYAVVSQFQKDLKENGIDLSPQSISNLQMGYIFEELVRKFNEQ 190

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A D  TPR+V++L   L+ + D     + P  I ++YDPT GTGG L+++  H+  
Sbjct: 191 ANEEAGDHFTPREVINLMVNLIFEEDQQRLSQ-PHAIASIYDPTAGTGGMLSESEKHLKS 249

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K    L   GQE   E++A+C A +LI+    +P  +L      G   SK+  TG
Sbjct: 250 YNDSIK----LQLFGQEYNAESYAICCADLLIK---DEPISNLVFGDTLGVKNSKNTGTG 302

Query: 290 ---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                    K+F Y  SNPPFG +W+ ++D +  E K+G  GRFG GLP+I+DGS+LFL 
Sbjct: 303 FVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFAGRFGAGLPRINDGSLLFLQ 362

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ +K++    GG R A+V + SPLF G AGSGES IRRW++END +EAI+ALP  LF+ 
Sbjct: 363 HMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDWLEAIIALPDQLFYN 422

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR 459
           T I TY+WI+SN+K++ R+GKVQLI+ T  +  + ++ G KR  ++  Q   +  +Y   
Sbjct: 423 TGIYTYVWIVSNKKSDRRKGKVQLIDGTQHYQKMAKSLGDKRNELSPAQIADLTRLYADF 482

Query: 460 ENG-------KF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS--- 508
           ++G       KF S++ + + FGY ++ V RPLR++F   +  + +++    +  L+   
Sbjct: 483 KDGASGRISTKFCSKIFNNQDFGYLKLTVERPLRLNFQAGQERIEKVKTQTAFINLAVSK 542

Query: 509 ---------------PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
                             Q   L  L  +   +Y    A  F+K  +     K L  K  
Sbjct: 543 KRKDEAQIKAEEAEGQRQQQAILAALSTIGDGLYQNRTA--FLK--LLDKALKGLDFKLG 598

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP------------YLESIQD 601
                A I A   +D  AD   D  G    D+ L + E VP            Y E   D
Sbjct: 599 APLKKAIIEALSERDQSADICLDSKGNPEADSQLRDTELVPLPKEITLPLPVDYGEGKTD 658

Query: 602 YFVREVSPHVPDAY--------IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
             V++V  H  +AY        +D  +ID       +VGYEI  NR FYQYQP R L +I
Sbjct: 659 ELVKQVKAHC-EAYLQAEVLPHVDHAWIDYSKT---KVGYEIPINRHFYQYQPPRALDEI 714

Query: 654 DAELKGVEAQIATLL 668
            AE+  +EA+I  +L
Sbjct: 715 KAEISELEAEIMAML 729


>gi|294789184|ref|ZP_06754423.1| type I site-specific deoxyribonuclease (modification subunit)
           [Simonsiella muelleri ATCC 29453]
 gi|294482925|gb|EFG30613.1| type I site-specific deoxyribonuclease (modification subunit)
           [Simonsiella muelleri ATCC 29453]
          Length = 726

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 240/741 (32%), Positives = 379/741 (51%), Gaps = 106/741 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L + +W  A  L G ++   + KV+LP  +L R +  L      ++  +      N +
Sbjct: 13  STLVSILWNIANGLRGTYRPPQYRKVMLPLIVLARFDAILANHTDQMKTVF----DENKN 68

Query: 69  LESFV------KVAGY----SFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
           L + +      ++ G     + YN S ++L+ L     + R N   YI  FS  AK IF+
Sbjct: 69  LPAVILDKKLTEIIGQNRKQTLYNVSGFNLARLLEDPDHIRANCSKYINGFSAKAKDIFD 128

Query: 117 DFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            F+F + + +L++A  L+KI ++F       G+ L PD + +  M  ++E LIR+F  + 
Sbjct: 129 KFEFETELDKLDEANRLFKILQDFIGDLNKHGLTLSPDVISNIQMGYLFEDLIRKFNEQA 188

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A D  TPR+V+ L   +    D    +++ G+ RT+YDPTCGTGG L+++   +   
Sbjct: 189 NEEAGDHFTPREVIRLMVNIAFAEDHEELQKA-GVHRTIYDPTCGTGGMLSESEKELK-- 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS------- 283
           G +  I   L  +GQE   E++A+C A +LI+    +P    +++I  G TL        
Sbjct: 246 GFNQAIS--LGLYGQEYNAESYAICCADLLIK---DEP----AEHIIFGDTLGVQNAKDK 296

Query: 284 ------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSM 336
                  D   GKRF Y  +NPPFG +W+  +D V+KEH++ G  GRFG GLP+I+DGS+
Sbjct: 297 GNGFTPNDGHQGKRFDYMFANPPFGVEWKIQEDFVKKEHQDQGFNGRFGAGLPRINDGSL 356

Query: 337 LFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           LFL H+ +K++ P     G R A+V + SPLF G AGSGES IRR+++ENDL+EA++ALP
Sbjct: 357 LFLQHMISKMKQPKTDEQGSRIAVVFNGSPLFTGDAGSGESNIRRYVIENDLLEAVIALP 416

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQIL 453
             +F+ T I TY+WILSN+K+E+R+GK+QLINAT  +  ++   G KR  +++     I 
Sbjct: 417 DQMFYNTGIYTYIWILSNKKSEKRQGKIQLINATGYFQKMQKSLGNKRNELSEQHITDIT 476

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS----- 508
            +Y      K S++ + + F Y +I V RPLR++F      + +L A   +  L+     
Sbjct: 477 QLYTDFIETKDSKIFNNQDFAYLKITVERPLRLNFQASPERIEKLWAQTAFVNLAKSKKI 536

Query: 509 -------------PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                           Q   ++ L  +   +Y       F+K  + +   K L  K S S
Sbjct: 537 KDETQIKAEEETGKAQQQAIINTLNGLDNTLYTS--RAQFLK--VLNPALKGLSFKVSGS 592

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE------------------ 597
              A + A   +D  AD  TD  G   PD  L + E VP                     
Sbjct: 593 LQKAILEALSERDQTADICTDSKGNPEPDPQLRDSELVPMPSEMAFPLSLGYDNETNLSD 652

Query: 598 -------SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
                  ++Q Y   EV PHV DA++        D+   ++G+EI  NR FY+YQP R L
Sbjct: 653 LLTALRPTVQAYMTAEVLPHVQDAWV--------DESKTKLGFEIPINRHFYEYQPPRDL 704

Query: 651 QDIDAELKGVEAQIATLLEEM 671
            +I +E+  +E +I  +L ++
Sbjct: 705 AEIKSEIVALEQEIMAMLGKL 725


>gi|283796107|ref|ZP_06345260.1| type I restriction-modification system methyltransferase subunit
           [Clostridium sp. M62/1]
 gi|291076321|gb|EFE13685.1| type I restriction-modification system methyltransferase subunit
           [Clostridium sp. M62/1]
          Length = 712

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 250/712 (35%), Positives = 362/712 (50%), Gaps = 85/712 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A  L G +    +  VI+P  ++RR ECALE T+ AV  KY      N+      
Sbjct: 24  LVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEETKDAVVAKYKQ--NPNLPAALLC 81

Query: 74  KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130
           +V+ Y FYNT+E++L  L   S +  +NL+SYI  FS N + I E    FS+ I +++K+
Sbjct: 82  QVSKYPFYNTNEFTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLKFSTQIDKMDKS 141

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             LY + K FS ++L+P  V    M  I+E +IRRF      G  D  TPR+V+ L   +
Sbjct: 142 NRLYSVVKKFSDLDLYPAHVDSMKMGYIFEDIIRRFSENAEAG--DHYTPREVIRLMVNV 199

Query: 191 LLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-HGQEL 247
           LL    +D L  E  G I T+ D  CG+GG L+   + +       K P + V   GQE+
Sbjct: 200 LLAEGCNDLLTDE--GKIATVLDAACGSGGMLSTTYDFL-----RRKNPYVDVRLFGQEI 252

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNI---QQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            PE++A+C+A MLI+  +        KNI   ++ +TL  D F  ++    + NPPFG  
Sbjct: 253 NPESYAICLADMLIKGQDV-------KNIMGDEEANTLKTDCFPDQKMRLVIMNPPFGTP 305

Query: 305 W------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           W      E  +  V +E+K G  GRF  GLP   D  +LF+ H  NKL+      GRAAI
Sbjct: 306 WGGKDAPEGQEKKVREENKKG--GRFEHGLPGTGDAQLLFMQHAINKLD---EKNGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF+G   SGES+IRRW+LE DLIEAI+ALPT LF+ T+I  Y++ILS  K  +R
Sbjct: 361 ITNGSPLFSGGTTSGESQIRRWMLEEDLIEAIIALPTQLFYNTDIGIYIFILSRNKRPDR 420

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           RGKVQLINA D+W  +R   GKKRR I+ D  ++I ++Y + E  ++ ++     F Y+ 
Sbjct: 421 RGKVQLINAVDMWKPLRKSLGKKRREIDRDSMKKITELYSNFEENQYCKIFPNEEFMYKE 480

Query: 478 IKVLRPLRMSFILDKTGLARL--------------EADI-TWRKLSPLH----------- 511
             V +PL+   +LD   + RL              E D    ++++P             
Sbjct: 481 YAVYQPLQRRGVLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQKYL 540

Query: 512 --QSFWLDILKPMM-----QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
             Q F  D+L  +      Q    YG  E ++K  +     K   + AS+   +A + A 
Sbjct: 541 AGQQFVADVLNILEANRSDQVFMDYGEFEKYLKSLL----GKVEGMSASRLTGIAMVLAV 596

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK 624
              D  A    D  GE I DT   + E +   +  + YF  EV PHVPDA     F  EK
Sbjct: 597 --MDKTAVVQKDRKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWAYEFDPEK 654

Query: 625 DKEIG---RVGYEINFNRFFYQYQPSRKLQDIDAEL----KGVEAQIATLLE 669
            +      ++G E  F RFFY+Y+   K  ++ A+     K +  +IA L E
Sbjct: 655 KESATNKEKLGAEFPFTRFFYEYKEPEKADNLLAQFMELEKSLSEKIAALQE 706


>gi|68535974|ref|YP_250679.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263573|emb|CAI37061.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 644

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 229/669 (34%), Positives = 350/669 (52%), Gaps = 49/669 (7%)

Query: 15  IWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNID 68
           +W  A+  L    +  D+G  ILP T+LRRLEC L PT+  V +     +   F    ID
Sbjct: 11  VWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILAPTKDEVLDLVWSLQEEGFSDEMID 70

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            E   +  G SFYN+S   L+ +   +      L  Y+ +FS + + +++ FDF+  +  
Sbjct: 71  WEVQTRF-GLSFYNSSRLDLTRIAQLDDHVYEALMDYVDAFSASVRDVWDAFDFAVKMKT 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+ A  L+ + K+F+ I++  + +PD  M +++EH++ +      + A  F TPRD + L
Sbjct: 130 LDSASRLWPVVKHFATIDMSMEALPDAQMGDLFEHVMYKAFDTKGKAAGAFYTPRDAIRL 189

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L   DD     + G  RT+YDPT GTGG L  A   + +     ++    V  GQE
Sbjct: 190 MVDILFASDDVGLT-ADGASRTVYDPTAGTGGMLLVAARALKELNPDIEV----VLAGQE 244

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L    +A+  A +LI+  E D        I+ G TL  DL+ G++F Y LSNPPFG  WE
Sbjct: 245 LMSTGYAIGKADLLIQGGEPD-------AIRHGDTLLTDLYEGEQFEYILSNPPFGMDWE 297

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNG-GGRAAIVLSSS 363
             + +V KE       RF  GLP   DG MLFL H+A+KL +P  PNG GGR A+V + S
Sbjct: 298 VQQKSV-KEQAKVPGSRFSHGLPGKDDGQMLFLAHVASKL-MPAGPNGAGGRGAVVSNGS 355

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G   SG  +IR WLLE+DL++AI+ LPT++F+ T I+TY+WIL   K E R+G VQ
Sbjct: 356 PLFTGAPESGPDKIRAWLLESDLVDAIIQLPTNMFYGTGISTYVWILDTNKEEHRKGFVQ 415

Query: 424 LINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+A++ W+   +  G+KRR + +  R+++L+ Y   E+ + S++L     G+R +KV +
Sbjct: 416 LIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAGFEDTEISKVLTPADLGFRDVKVTK 475

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
             R+   +    ++R+   +  +   P H     D+       +           E++K+
Sbjct: 476 QKRLRVGVTPEAVSRV---LEHKSAVPEHAEVLADVADVKFNDL----------PEALKA 522

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
             AK   VK     I   + A G  D  A+P  D  G+ I D+  +  E +P  E +  +
Sbjct: 523 A-AKKRGVKMLAGMIDEVLEAVGVPDENAEPSVDRKGKPILDSAFSMTERIPLTEDVDAH 581

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             REV P  PD           D+E  +VGYEI F R FY+  P R L++IDA++  V  
Sbjct: 582 MEREVLPFAPDVTW--------DEEAAKVGYEIPFKRVFYRPTPVRSLEEIDADVAAVMG 633

Query: 663 QIATLLEEM 671
           ++A    E+
Sbjct: 634 RLAEKFAEV 642


>gi|212690634|ref|ZP_03298762.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855]
 gi|237725171|ref|ZP_04555652.1| N-6 DNA methylase [Bacteroides sp. D4]
 gi|212666734|gb|EEB27306.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855]
 gi|229436437|gb|EEO46514.1| N-6 DNA methylase [Bacteroides dorei 5_1_36/D4]
          Length = 658

 Score =  359 bits (922), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 240/683 (35%), Positives = 360/683 (52%), Gaps = 67/683 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------EKYL 60
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L  + + V       E+  
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116
                +ID  +   +  AGY FYNTS  SLS L +   +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLKGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATAL-LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            V  GA  F TPRD+V L T + LL  +D ++++  G I ++YDP CGTGG LT   + +
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD--GKIISVYDPCCGTGGILTLTKDTI 239

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F
Sbjct: 240 EETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEF 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             ++F++ L+NPP+G  W+++ D+V  E E KN    RF PGLP  SDG +LF +H+ +K
Sbjct: 293 RDQKFNFMLANPPYGVDWKREYDSVSAEAEDKNS---RFAPGLPDKSDGQLLFTLHMLHK 349

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++  P G  R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IAT
Sbjct: 350 MD--PKGS-RVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIAT 406

Query: 406 YLWILSNRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           YLWI  N+K E  + KV LINA     +    +N G K  +++D  R +I  IY + E  
Sbjct: 407 YLWIFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETC 466

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
             ++++D   F Y  I V RPLR+ +   KT  A L+     ++   L     LD +   
Sbjct: 467 DNAKLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEK---KQSEALANIIALDDIDTE 523

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVN 578
                 + + ES              K+K +   I      FG     A  V     D N
Sbjct: 524 RTDAEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETAPEVHVIPLDDN 570

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
            + + DTNL +YE++P+   IQ+YF  EV    PDA++D+    EKDK    +G E   +
Sbjct: 571 SDLVADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR----EKDK----IGCEFPIS 622

Query: 639 RFFYQYQPSRKLQDIDAELKGVE 661
           + FY+YQP R ++DI A+++ +E
Sbjct: 623 KLFYEYQPLRSVEDILADIRALE 645


>gi|237709676|ref|ZP_04540157.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|229456312|gb|EEO62033.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA]
          Length = 658

 Score =  359 bits (921), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 240/683 (35%), Positives = 360/683 (52%), Gaps = 67/683 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------EKYL 60
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L  + + V       E+  
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116
                +ID  +   +  AGY FYNTS  SLS L +   +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATAL-LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            V  GA  F TPRD+V L T + LL  +D ++++  G I ++YDP CGTGG LT   + +
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD--GKIISVYDPCCGTGGILTLTKDTI 239

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F
Sbjct: 240 EETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEF 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             ++F++ L+NPP+G  W+++ D+V  E E KN    RF PGLP  SDG +LF +H+ +K
Sbjct: 293 RDQKFNFMLANPPYGVDWKREYDSVSAEAEDKNS---RFAPGLPDKSDGQLLFTLHMLHK 349

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++  P G  R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IAT
Sbjct: 350 MD--PKGS-RVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIAT 406

Query: 406 YLWILSNRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           YLWI  N+K E  + KV LINA     +    +N G K  +++D  R +I  IY + E  
Sbjct: 407 YLWIFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETC 466

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
             ++++D   F Y  I V RPLR+ +   KT  A L+     ++   L     LD +   
Sbjct: 467 DNAKLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEK---KQNEALANIVALDDIDTE 523

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVN 578
                 + + ES              K+K +   I      FG     A  V     D N
Sbjct: 524 RTDAEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETASEVHVIPFDDN 570

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
            + + DTNL +YE++P+   IQ+YF  EV    PDA++D+    EKDK    +G E   +
Sbjct: 571 SDLVADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR----EKDK----IGCEFPIS 622

Query: 639 RFFYQYQPSRKLQDIDAELKGVE 661
           + FY+YQP R ++DI A+++ +E
Sbjct: 623 KLFYEYQPLRSVEDILADIRALE 645


>gi|291540899|emb|CBL14010.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 710

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 252/714 (35%), Positives = 362/714 (50%), Gaps = 89/714 (12%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A  L G +    +  VI+P  ++RR ECALE T+ AV  K+      N+      
Sbjct: 24  LVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEATKDAVVAKHKQ--NPNLPAALLC 81

Query: 74  KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130
           +V+ Y FYN SEY+L  L   S +  +NL+SYI  FS N + I E    FS+ I +++K+
Sbjct: 82  QVSKYPFYNYSEYTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLKFSTQIDKMDKS 141

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             LY + K FS ++L+P  V    M  I+E +IRRF      G  D  TPR+V+ L   +
Sbjct: 142 NRLYSVVKKFSELDLYPTHVDSMKMGYIFEDIIRRFSENAEAG--DHYTPREVIRLMVNV 199

Query: 191 LLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-HGQEL 247
           LL    +D L  E  G I T+ D  CG+GG L+   + +       K P + V   GQE+
Sbjct: 200 LLAEGCNDLLTDE--GKIATVLDAACGSGGMLSTTYDFL-----RRKNPYVDVRLFGQEI 252

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNI---QQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            PE++A+C+A MLI+  +        KNI   ++ +TL  D F  ++    + NPPFG  
Sbjct: 253 NPESYAICLADMLIKGQDV-------KNIMGDEEANTLKTDCFPDQKMRLVIMNPPFGTP 305

Query: 305 W------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           W      E  +  V +E+K G  GRF  GLP   D  +LF+ H  NKL+      GRAAI
Sbjct: 306 WGGKDAPEGQEKKVREENKKG--GRFEHGLPGTGDAQLLFMQHAINKLD---EKNGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF+G   SGES+IRRW+L+ DLIEAI+ALPT LF+ T+I  Y++ILS  K  +R
Sbjct: 361 ITNGSPLFSGGTTSGESQIRRWMLKEDLIEAIIALPTQLFYNTDIGIYIFILSRNKRPDR 420

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           RGKVQLINA D+W  +R   GKKRR I+ D   +I ++Y + E  K+ ++     F Y+ 
Sbjct: 421 RGKVQLINAVDMWKPLRKSLGKKRREIDRDSMVKITELYSNFEENKYCKIFPNEEFMYKE 480

Query: 478 IKVLRPLRMSFILDKTGLARL--------------EADI-TWRKLSPLH----------- 511
             V +PL+   +LD   + RL              E D    ++++P             
Sbjct: 481 YAVYQPLQRRGMLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQKYL 540

Query: 512 --QSFWLDILKPMM-----QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
             Q F +D+L  +      Q    YG  E ++K  +   E     + AS+   +A + A 
Sbjct: 541 AGQQFVVDVLTILEANRSDQMFMDYGEFEKYLKSLLGKVEG----MSASRLTGIAMVLAV 596

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK 624
              D  A    D  GE I DT   + E +   +  + YF  EV PHVPDA     F  EK
Sbjct: 597 --MDKTAVVQKDRKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWVYEFDPEK 654

Query: 625 -----DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL----KGVEAQIATLLE 669
                +KE  ++G E  F RFFY+Y+   K  D+  +     K +  +IA L E
Sbjct: 655 KESPTNKE--KLGAEFPFTRFFYEYKEPEKADDLLVQFMELEKSLSEKIAALQE 706


>gi|226949373|ref|YP_002804464.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto]
 gi|226841985|gb|ACO84651.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto]
          Length = 571

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 278/477 (58%), Gaps = 21/477 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A+ L G +K  ++G+VILP T++RR +C L  T+ +V +K    G   +    
Sbjct: 11  ANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNLPMKDVF 70

Query: 72  FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             K AGY FYN S++    L S       N   YI  FS+N + I E F+F + I RL +
Sbjct: 71  LCKEAGYDFYNISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQITRLAE 130

Query: 130 AGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             LLY + + F     +LHP  + +  M  I+E +IRRF    +E A    TPR+V+ L 
Sbjct: 131 KNLLYIVIQEFVTPNADLHPSKISNLEMGYIFEEIIRRFSEAHNEDAGQHYTPREVIELM 190

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L   D  L   +  + +T+YDP CGTGG L+ A +++       +    L+  GQE+
Sbjct: 191 VNILFYNDSELL--TGNIAKTIYDPACGTGGMLSVAEDYLKKLNKDAE----LIAFGQEI 244

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             +T+A+C A MLI+   +D       NI+ G+TLS D F   R+ Y LSNPPFG++W+ 
Sbjct: 245 NDQTYAICKADMLIKGANAD-------NIKNGNTLSDDQFKEDRYDYILSNPPFGREWKN 297

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           DK AVE E K G  GRFG G+P + DG MLFL     K++  P G  R AI+ + SPLF 
Sbjct: 298 DKKAVETEAKLGFAGRFGAGVPAVGDGQMLFLETAIAKMK--PQGS-RIAIIHNGSPLFT 354

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K + R+GKVQLINA
Sbjct: 355 GDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGKVQLINA 414

Query: 428 TDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
             L+   R   G KR  I  +   +I  +Y   +  + S++ D + FGY +I V RP
Sbjct: 415 NGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVVERP 471



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 8/93 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+ + DT+L + ENVP  E I +YF REV P  PDA+I        D++  +VGYEI F 
Sbjct: 484 GKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWI--------DEKKTKVGYEIPFT 535

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           R+FY+Y P +  ++++ E++ +E ++  +LEE+
Sbjct: 536 RYFYKYVPPKPAKELEMEIREIEMELDGVLEEI 568


>gi|265754308|ref|ZP_06089497.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA]
 gi|263235017|gb|EEZ20572.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA]
          Length = 658

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 240/683 (35%), Positives = 360/683 (52%), Gaps = 67/683 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------EKYL 60
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L  + + V       E+  
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116
                +ID  +   +  AGY FYNTS  SLS L +   +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATAL-LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            V  GA  F TPRD+V L T + LL  +D ++++  G I ++YDP CGTGG LT   + +
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD--GKIISVYDPCCGTGGILTLTKDTI 239

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F
Sbjct: 240 EETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEF 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             ++F++ L+NPP+G  W+++ D+V  E E KN    RF PGLP  SDG +LF +H+ +K
Sbjct: 293 RDQKFNFMLANPPYGVDWKREYDSVSAEAEDKNS---RFAPGLPDKSDGQLLFTLHMLHK 349

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++  P G  R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IAT
Sbjct: 350 MD--PKGS-RVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIAT 406

Query: 406 YLWILSNRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           YLWI  N+K E  + KV LINA     +    +N G K  +++D  R +I  IY + E  
Sbjct: 407 YLWIFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETC 466

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
             ++++D   F Y  I V RPLR+ +   KT  A L+     ++   L     LD +   
Sbjct: 467 DNAKLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEK---KQSEALANIVALDDIDTE 523

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVN 578
                 + + ES              K+K +   I      FG     A  V     D N
Sbjct: 524 RTDAEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVCETAPEVHVIPLDDN 570

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
            + + DTNL +YE++P+   IQ+YF  EV    PDA++D+    EKDK    +G E   +
Sbjct: 571 SDLVADTNLRDYESIPFKTDIQEYFQNEVLRFTPDAWMDR----EKDK----IGCEFPIS 622

Query: 639 RFFYQYQPSRKLQDIDAELKGVE 661
           + FY+YQP R ++DI A+++ +E
Sbjct: 623 KLFYEYQPLRSVEDILADIRALE 645


>gi|260438581|ref|ZP_05792397.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809172|gb|EFF68377.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Butyrivibrio crossotus
           DSM 2876]
          Length = 702

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 236/702 (33%), Positives = 352/702 (50%), Gaps = 69/702 (9%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
           NFIW  A  L G ++   +  VI+P  ++RR ECAL+ TR AV +K+      +   ++ 
Sbjct: 23  NFIWSIANKLRGPYQSDKYKDVIIPMVIIRRFECALDDTREAVAKKFEEV--PSYPAKAM 80

Query: 73  VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            +++GY FYNTS  +L+ L   + +   N + YI SFS N + I  + DF   I +++K 
Sbjct: 81  YRISGYQFYNTSRLTLAELVNDADHLAANFKFYIKSFSANIQDIIRNLDFDKQIDKMDKH 140

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATA 189
             L  + K FS I+L+P+T+ +  M  I+E LIR+F      G  D  T RD++  + + 
Sbjct: 141 NRLLSVVKAFSEIDLNPNTIDNMKMGYIFEELIRKFSENAEAG--DHYTGRDIIKAMVSI 198

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL +  D +F +  G I T+ D   GTGG L+ A N++        +        QE+ P
Sbjct: 199 LLAEGCDDIFDD--GKIVTILDQAAGTGGMLSTANNYIKRFNPTADVRLF----SQEVNP 252

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305
           E++A+C+A MLIR   +D       NI+   T+  D FT  +  + + NPPFG+ W    
Sbjct: 253 ESYAMCLAEMLIRGQNAD-------NIRLQDTMKADCFTDTKMRFVIENPPFGQPWGGKD 305

Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             E D++AV+ E   G  GRF  G P   D  +LF+    NK++   +  GRAAI+ + S
Sbjct: 306 APEGDEEAVKAEVLKGTSGRFPAGAPSSGDMQLLFIQSAINKMD---DECGRAAIIENGS 362

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF+G   SGES+IRRWLLEND IEAI+ L TD+F+ T IATY+W+LS  K  ER+GK+Q
Sbjct: 363 PLFSGGTSSGESQIRRWLLENDYIEAIIQLSTDMFYNTGIATYIWVLSKNKRAERKGKIQ 422

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+A+    S+R   G KR+ I  + R +I  +Y   +  +  ++ D   F YR   V++
Sbjct: 423 LIDASSFSHSLRKTLGNKRKEITPEDRIEITKLYADFKENEHCQIYDNTEFIYREYAVMQ 482

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL--------------------KPM 522
           PL+ S+ + +    R+ A ++   LS L+    +D L                    KP+
Sbjct: 483 PLQRSYAITED---RINAMLSSGALSTLYDEAKVDELENMDELTGKDKNKLDNFKKNKPI 539

Query: 523 MQQIYP----------YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              I            Y   E F               K SK      I      D  AD
Sbjct: 540 YDAIVDALNNAVSDKVYKNPEIFTPVVNNILSGIISDAKDSKKIADKIIKGLSVMDKTAD 599

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE---KDKEIG 629
              D  G  I DT   + E VP+  +I DY   EV PHVPDA   K F +E   K   + 
Sbjct: 600 IQKDKKGNVIYDTETKDTEIVPWETNIDDYMASEVLPHVPDA---KAFFEEDLGKKNPVI 656

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           + G EI F R+FY+YQ      ++      +EA + + ++++
Sbjct: 657 KTGAEIPFTRYFYKYQAPASSDELAKRFNELEASVDSRIKKL 698


>gi|319957036|ref|YP_004168299.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
 gi|319419440|gb|ADV46550.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
          Length = 599

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 211/505 (41%), Positives = 300/505 (59%), Gaps = 52/505 (10%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REKYLAFGGSN 66
           A+ IW  A  L GD+K +D+GKVILP T+LRRL+  L PT+  V     R + ++    +
Sbjct: 8   ADLIWDIAGLLRGDYKRSDYGKVILPLTVLRRLDAVLAPTKEKVLAALPRVEKMSENAKD 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           + L    K+AGY+F+N S +  + + +   N   NL +YI  FS NA+ I E F+F   I
Sbjct: 68  LYLN---KIAGYNFHNRSRFDFAKIVADPNNVAMNLRNYINGFSSNAREIIEYFNFDDQI 124

Query: 125 ARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            R++  K+ LLY++ K F+  E+  D V    M  I+E LIR+F  + +E A +  TPR+
Sbjct: 125 DRMDDPKSDLLYQVVKAFA--EMPFDDVDSMQMGYIFEELIRKFAEQSNETAGEHFTPRE 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL + D  +FKE  G+++TLYDP CGTGG L+   NH+       K    L  
Sbjct: 183 VIELMVNLLFNSDREIFKE--GIVKTLYDPACGTGGMLSIGENHIKRLNPDAK----LEL 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PE++A+C +  LI+    +P      NI+ G+T + D    ++F Y LSNPPFG
Sbjct: 237 FGQEINPESYAICKSDTLIKG--ENP-----SNIKFGNTFTVDGLRDEKFDYMLSNPPFG 289

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K    ++ E++N G  GRFG GLP+I+DGS+LFL H+ +K++     G R  IV +
Sbjct: 290 VEWKKAAKTIKAEYENLGFAGRFGAGLPRINDGSLLFLQHMISKMKPE---GSRIGIVFN 346

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G+AGSGES IRRW++END +EAIVALP  LF+ T IATY+W+L+N+K  + RGK
Sbjct: 347 GSPLFTGQAGSGESNIRRWIIENDWLEAIVALPDQLFYNTGIATYIWVLNNQKDAKCRGK 406

Query: 422 VQLINATD----------------LWTSI-RNEGKKRRII--NDDQR--RQILDIYVSRE 460
           +QLINAT                  W  + R+ G KR+ I  NDD+R    I  +Y   E
Sbjct: 407 IQLINATGSKDEALMEEGKRDFNRFWEKMPRSLGDKRKRIPTNDDERGINYITKLYGEFE 466

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLR 485
            G+F ++     FGY R+ V RPLR
Sbjct: 467 EGEFVKIFPNDYFGYWRVTVERPLR 491



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 18/105 (17%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYL----------ESIQDYFVREVSPHVPDAYI 616
           +D   + VTD  G   PD  L + EN+P+L          +SI++YF REV PHVPDA+I
Sbjct: 491 RDEAGNIVTDTKGRPKPDKELRDTENIPFLREDEEGNLVPQSIEEYFEREVLPHVPDAWI 550

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           D+           ++GYEINF+++FY+++P R L  I A++  +E
Sbjct: 551 DE--------SKTKIGYEINFDKYFYEFKPLRSLDAIRADILALE 587


>gi|303229050|ref|ZP_07315856.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516261|gb|EFL58197.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 574

 Score =  356 bits (914), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 206/491 (41%), Positives = 285/491 (58%), Gaps = 28/491 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+ IW  A+ L G +K  ++G+VILP T+LRR +C L  T+SAV + Y       +DL  
Sbjct: 11  ASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKSAVLDTYNKLKDQKLDLLD 70

Query: 72  --FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               +VAG+ FYN S+Y+  TL     N  +N   YI  FSDN + I   F F + I  +
Sbjct: 71  GLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHITTM 130

Query: 128 EKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               +LY + K F+     LHPD + +  M  ++E +IRRF    +E A    TPR+V+ 
Sbjct: 131 ADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPREVIR 190

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L   D+A+      + RT+YD  CGTGG L+ A  ++A+  S  K    L+  GQ
Sbjct: 191 LMVNILFHDDNAVLS-GQNVARTIYDCACGTGGMLSVAEEYLANLNSTSK----LISFGQ 245

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +T A+C A MLI+   +D  R     I+ G+TLS D F+ + F Y +SNPPFG++W
Sbjct: 246 ELNDQTFAICKADMLIKG--NDAER-----IKSGNTLSDDQFSAETFDYIISNPPFGREW 298

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           + ++  V+ E K G  GRFGPGLP  +DG MLFL +   K+   P G  R AI+ + SPL
Sbjct: 299 KNEEAIVKNEAKLGFDGRFGPGLPSTADGQMLFLENAIKKMN--PQGA-RIAIIHNGSPL 355

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQL 424
           F G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K    R  KVQL
Sbjct: 356 FTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREEKVQL 415

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA DL+   R   G KR  I +   ++I  IY      + S++ D   FGY +I V RP
Sbjct: 416 INANDLYEKRRKSLGNKRNDIPESAIQEITKIYGEFRETEISKIFDNEDFGYTKITVERP 475

Query: 484 LRMSFILDKTG 494
                +LD+ G
Sbjct: 476 -----VLDEDG 481



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D    PV  V G+   DT   + E VP  E I+ YF REV P  PDA+I        D +
Sbjct: 478 DEDGKPVL-VKGKPKADTKRRDTEIVPLKEDIETYFKREVLPFAPDAWI--------DTK 528

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             ++GYEI F R FY+Y   R   +I AE+K +E+ +   L E+
Sbjct: 529 KNKIGYEIPFTRHFYKYVAPRLSDEIMAEIKALESDLDGALIEV 572


>gi|256826062|ref|YP_003150022.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
 gi|256689455|gb|ACV07257.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
          Length = 644

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 232/678 (34%), Positives = 352/678 (51%), Gaps = 81/678 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
           F+W+ A+ L G FK  ++G V+LP  +LRR++ AL  T++ V  +   +       +  +
Sbjct: 12  FVWRIADRLRGTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGPGQDKLL 71

Query: 74  K-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
           K  +   FYNTS  + + L   + N R NL  YI   S  A  + E +DF   I R+++ 
Sbjct: 72  KRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPKIERMDRD 131

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +LY +  +F+ ++L    V +  M  I+E L+R+F    +E A +  TPR+V+ L   L
Sbjct: 132 DILYGVIADFADLDLRTSVVSNEAMGYIFEELLRKFSEMSNETAGEHYTPREVISLMVQL 191

Query: 191 LL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL         E+P  +RT+YDP  GTGG L  A++ V     +  +       GQEL  
Sbjct: 192 LLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGALDGVQGLNGNATV----TVSGQELND 247

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           ET A+  + +++  L   P R     + +G++L++D F  ++F + L+NPP+G  W+K  
Sbjct: 248 ETWAIAQSDLMM--LGIGPER-----MARGNSLTQDAFPTEQFDFMLANPPYGVDWKKYA 300

Query: 310 DAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             ++ E +N G  GRFG G P++SDGS LFL H+ +K++    GG R  IVLS SPLF+G
Sbjct: 301 GPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMK---PGGSRIGIVLSGSPLFSG 357

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           +AGSGESEIR W+LEND +E IVALP  +F+ T I+TY+WIL+N K    RGKV+LI+A 
Sbjct: 358 QAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKDGASRGKVRLIDAR 417

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFS-----RMLDYRTFGYRRIKVLR 482
           ++ T +R   G KR+ +  +  R+I ++Y    + +F+     R+++   FGY+RI V R
Sbjct: 418 EMGTKMRKSLGDKRKELKPEAIREITNLYGGALD-EFADDPRVRVMNRNDFGYQRITVER 476

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           P+R                  W   S L ++           +   +     F  E   S
Sbjct: 477 PMRRH----------------WEVTSELAEA----------HEGIGHLVGRRFETEKALS 510

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------ 596
           NE   L  K  K    A +      D  A PV    GE  PD +L + EN+P        
Sbjct: 511 NELADLDTKERK----AVLKGAAIADEEA-PVILKKGEPAPDPDLRDAENIPLPDGWMDL 565

Query: 597 ----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
                     E+ + +   E+ P+VPDA++        D    +VGYEI F R FY Y+P
Sbjct: 566 PENRRFSTLDEAAEKHLHTEIHPYVPDAWL--------DYSKTKVGYEIPFTRQFYVYEP 617

Query: 647 SRKLQDIDAELKGVEAQI 664
            R + +I AE+K +E QI
Sbjct: 618 PRPVDEIAAEIKELEEQI 635


>gi|282849444|ref|ZP_06258829.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745]
 gi|282581148|gb|EFB86546.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745]
          Length = 574

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 207/491 (42%), Positives = 286/491 (58%), Gaps = 28/491 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LAFGGSNIDL 69
           A+ IW  A+ L G +K  ++G+VILP T+LRR +C L  T+ AV + Y  L     ++  
Sbjct: 11  ASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKPAVLDTYNKLKDQDLDLLD 70

Query: 70  ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               +VAG+ FYN S+Y+  TL     N  +N   YI  FSDN + I   F F + I  +
Sbjct: 71  GLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHITTM 130

Query: 128 EKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               +LY + K F+     LHPD + +  M  ++E +IRRF    +E A    TPR+V+ 
Sbjct: 131 ADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPREVIR 190

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L   D+A+      + RT+YD  CGTGG L+ A  ++A+  S  K    L+  GQ
Sbjct: 191 LMVNILFHDDNAVLS-GQNVARTIYDCACGTGGMLSVAEEYLANLNSTSK----LISFGQ 245

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +T A+C A MLI+   +D  R     I+ G+TLS D F+G+ F Y +SNPPFG++W
Sbjct: 246 ELNDQTFAICKADMLIKG--NDAER-----IKSGNTLSDDQFSGEIFDYIISNPPFGREW 298

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           + ++  V+ E K G  GRFGPGLP  SDG MLFL +   K+   P G  R AI+ + SPL
Sbjct: 299 KNEEAIVKNEAKLGFDGRFGPGLPSTSDGQMLFLENAIKKMN--PQGS-RIAIIHNGSPL 355

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQL 424
           F G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K    R GKVQL
Sbjct: 356 FTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREGKVQL 415

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA DL+   R   G KR  I +   ++I  IY      + S++ D   FGY +I V RP
Sbjct: 416 INANDLYEKRRKSLGNKRNDIPESATQEITKIYGEFRETEISKIFDNEDFGYTKITVERP 475

Query: 484 LRMSFILDKTG 494
                +LD+ G
Sbjct: 476 -----VLDENG 481



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 573 PVTDVNGEWI-------PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           PV D NG+ +        DT   + E VP  E I+ YF REV P  PDA+I        D
Sbjct: 475 PVLDENGKPVLVKGKPKVDTKRRDSEIVPLKEDIETYFKREVLPFAPDAWI--------D 526

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            +  ++GYEI F R FY+Y   R   +I AE+K +E+ +   L E+
Sbjct: 527 TKKNKIGYEIPFTRHFYKYVAPRPSGEIMAEIKALESDLDGALVEV 572


>gi|325662103|ref|ZP_08150721.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471552|gb|EGC74772.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 712

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 364/720 (50%), Gaps = 93/720 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIW  A  L G ++   +  VI+P  ++RR ECALEPT+  V  ++ A    N   ++
Sbjct: 22  VNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEPTKDKVVAQFKA--NPNYPAKA 79

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDFSSTIA 125
             +++G+ FYNTSE++L+ L   + N   N ++Y+ SFS N + I     +  DF   I 
Sbjct: 80  MYRISGFQFYNTSEFTLAELINDADNLAANFKAYLQSFSPNVQEIIVSAEKGLDFYKQID 139

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +++K   L  + K FS ++L+P T+ +  M  I+E LIRRF      G  D  T RD++ 
Sbjct: 140 KMDKNDRLLSVVKAFSELDLNPRTIDNVKMGYIFEDLIRRFSENAEAG--DHYTGRDIIK 197

Query: 186 LATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           L   +LL +  D +F +  G + T+ D  CGTGG L+ + N +      +     +   G
Sbjct: 198 LMVNILLAEGCDDIFDD--GKVITVLDQACGTGGMLSTSYNFI----KRYNPTADVRLFG 251

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ PE++A+C+A MLI+   ++       NI    T+ KD F G +  + + NPPFG  
Sbjct: 252 QEINPESYAICLAEMLIKGQNAE-------NICYQDTMKKDRFAGTKMRFVIENPPFGTP 304

Query: 305 W------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           W      E  + AV  E+  G  GR+G GLP   D  MLFL    +KL+   +  GRAAI
Sbjct: 305 WGGKDAAEGVEKAVNDEYVKGFDGRWGAGLPGSGDMQMLFLQSAIDKLD---DNFGRAAI 361

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF G   SGES+IRRWLLENDLIEAI++L +DLF+ T I TY+W+LS  K  ER
Sbjct: 362 IENGSPLFTGGTTSGESQIRRWLLENDLIEAIISLSSDLFYNTGIITYIWVLSKNKRAER 421

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GK+QLI+AT     +R   G KR  I  D R+ I  +Y   EN ++S++ +   F YR 
Sbjct: 422 KGKIQLIDATSFCHKLRRVLGNKRNEITPDDRKVITKLYAEFENNEYSKIYNNEEFIYRE 481

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL-----------KPMMQQI 526
             V++P++ S+ +      R+E+ I+   L+ L+ +  ++ L           K +    
Sbjct: 482 YTVMQPMQRSYGI---STVRIESMISKGSLATLYDAAKVEELEKSENLTGKEQKKLCSMK 538

Query: 527 YPYGWAESFVKE------------------------------SIKSNE-AKTLKVKASKS 555
             YG  E  +                                 ++SNE  KT+    +K 
Sbjct: 539 ENYGVYEYILSRLRAESSEQIYYSPNEFIPVLTEILLQNNLPVVQSNEVVKTI----NKK 594

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
            I    +   + D  A+   D  G  I D    + E +   ESI +Y  REV P VPDA 
Sbjct: 595 LIERIADGLSQMDKAAEIQRDKKGNIIFDKETKDTEVIKIEESIDEYMEREVLPFVPDAV 654

Query: 616 IDKIFIDEK---DKEIGRVGYEINFNRFFYQYQ---PSRKLQDIDAEL-KGVEAQIATLL 668
               F +E+    K I + G EI F R+FY+YQ    S  L+D   EL K +  Q+ ++ 
Sbjct: 655 ---AFFEERMDLKKPIIKTGAEIPFTRYFYKYQTPLSSTVLEDRFIELEKAISDQVRSIF 711


>gi|21229083|ref|NP_635005.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907637|gb|AAM32677.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 714

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 254/728 (34%), Positives = 376/728 (51%), Gaps = 95/728 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---GGSN 66
           + NFIW  A+D+  D +    +  VILP T+LRRL+  LEPT+ AV +   A    G +N
Sbjct: 9   ITNFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMKAALDSAGIAN 68

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSS 122
            D +   + A  +FYNTS+++L  L S +++  L    E+Y+  FS N + I ++F+F +
Sbjct: 69  QD-QPLRQAAEQAFYNTSKFTLRDLKSRSSQQQLKADFEAYLDDFSPNVQDILDNFEFRN 127

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRFGS 168
            I RL KA  L K+ + F  S I L P+ V             +  M  I+E L+RRF  
Sbjct: 128 QIPRLSKADALGKLIEKFLDSSINLSPNPVMNGNDSVKHYGLDNHAMGTIFEELVRRFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRD V L   L+  P   +  +       LYD  CGTGG LT A   + 
Sbjct: 188 ENNEEAGEHWTPRDAVKLMARLIFLP---IADQIVSSTYLLYDGACGTGGMLTVAEEELK 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKD 285
                H        +GQE+  ET+A+  A +L++        D + N+  G   STLS D
Sbjct: 245 QLAQDHGKQVATHLYGQEINAETYAIAKADLLLK-----GEGDAADNLVGGPEYSTLSND 299

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD------KDAVEK-----EHKNGELGRFGPGLPKISDG 334
            F  ++F + LSNPP+GK W+ D      KD ++      EH           L + SDG
Sbjct: 300 AFPARKFDFMLSNPPYGKSWKSDLERMGGKDGIKDPRFTIEHAGDPEYSL---LTRSSDG 356

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAIVALP
Sbjct: 357 QMLFLVNMLSKMKHDTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIVALP 416

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T IATY+W+L NRK E R+GK+QLI+AT  +  +R N GKK   + ++  ++I 
Sbjct: 417 LNMFYNTGIATYIWVLGNRKPEHRKGKIQLIDATQWYRPLRKNLGKKNCELGEEDIQKIC 476

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK-LSPLHQ 512
           D +++ E  + S++     FGY ++ V RPLR++  L    +A      T+RK  +   +
Sbjct: 477 DTFLTFEESEQSKIFPNAAFGYWKVTVERPLRLAVDLTPDAIA------TFRKACTEAGE 530

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK--VKASKSFIVAFINAFGRKDPR 570
                ++     Q+ P G    F  + + S EA   K  VK +   +    N+  RKD  
Sbjct: 531 EQLAALVDKAAVQLGP-GLHNDF-NDFLPSFEALASKAGVKLTAKRLKLLQNSLSRKDES 588

Query: 571 ADPV--------------------TDVNG-----EWIPDTNLTEYENVPYLE--SIQDYF 603
           A PV                      VNG     E+ PDT L + E VP LE   I+ + 
Sbjct: 589 AAPVIKKVHKPGKAEADPMHGRFEATVNGKLCVVEYEPDTELRDTEQVPLLEEGGIEAFI 648

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
           +REV PH  DA+ID+  +        + GYEI+F R+FY+ QP R L++I A++  +E +
Sbjct: 649 LREVLPHASDAWIDESSV--------KTGYEISFTRYFYKPQPLRSLEEIRADILALEKE 700

Query: 664 IATLLEEM 671
              LL+E+
Sbjct: 701 TEGLLDEI 708


>gi|327184405|gb|AEA32850.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 695

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 348/700 (49%), Gaps = 71/700 (10%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  +   +    +G VI+P T++RR ECALEPT+  V  +Y           +
Sbjct: 19  ANFIWSIANKIRAAYMPDKYGDVIIPMTIIRRFECALEPTKDQVLAQYQEM--PEFPAMA 76

Query: 72  FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           F ++ GY FYNTS++ L  L +   N   N ++YI+ FS + + I +  D S  I ++  
Sbjct: 77  FYQITGYQFYNTSKFDLKELCNDPDNIAENFKAYISGFSKDVQEILKQLDMSGQIDKMND 136

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              LY + K FS I+L  +      M  I+E+LI RF   V  G   F T RD++ L  +
Sbjct: 137 NNCLYSVVKAFSEIDLSVEHFDSIKMGYIFENLIGRFYQNVDAGQ--FYTGRDIIKLCVS 194

Query: 190 LLLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           LLL    DD   K     + T+ D  CGTGG L+ A  ++     H+     +  +GQE+
Sbjct: 195 LLLAEGCDDITDKNK---VITVIDQACGTGGMLSTAYTYL----KHYNPTADVHLYGQEM 247

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW-- 305
             +++AV +A MLI+    D       N +   TL +D F  ++  + L NPPFG  W  
Sbjct: 248 MGQSYAVGLAEMLIKNQNID-------NFKIADTLKEDCFPDRKMRFALENPPFGTPWGG 300

Query: 306 ----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
               +  +DAV++E+  G+  R+  GLP   D  +LFL     KLE      GRAAI+ +
Sbjct: 301 KDAKDGQEDAVKEEYAKGKNSRWPAGLPASGDSQLLFLQSALAKLE----DNGRAAIIEN 356

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G   SGES+IRRWLLEND +EAIVA+PTDLF+ T IATY+WILS  K+E+RRGK
Sbjct: 357 GSPLFTGNTASGESQIRRWLLENDYLEAIVAMPTDLFYNTGIATYIWILSKNKSEKRRGK 416

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+AT+++T +R   G K+   + + R +I  +Y        S++     F YR   V
Sbjct: 417 VQLIDATNIYTKLRKPLGNKKNEFSPENRAEITKLYTDFSENDLSQIHANNEFIYREYTV 476

Query: 481 LRPL---------RMSFILDKTGLARLEADITWRKLSP-----------------LHQSF 514
            +PL         R+  +L  T +     +   ++L                    +++ 
Sbjct: 477 KQPLQRDYGITEARIQQMLQSTSVKNFYDEAKVQELESSETKLKAKDAKKLAKYKKNEAV 536

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
           +  ++  + + I    W      E +  N    L     K  I   ++   + D +A+  
Sbjct: 537 YKQMMSILKENISNKLWMSPEEFEPVLHN---LLDGIVDKKLISKIMDGLSQMDKKAEIQ 593

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE---KDKEIGRV 631
            D  G  + D    + E V   E I DY  +EV P VPDA   K F DE   K K + + 
Sbjct: 594 HDRKGNIVYDKETADTEIVNIDEPIDDYMQKEVLPFVPDA---KAFFDEDLGKKKPVIKT 650

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           G EI F R+FY+YQ     + + +E+  +EA I+   EEM
Sbjct: 651 GAEIPFTRYFYKYQKPEDSEKLASEINKLEAAIS---EEM 687


>gi|33240158|ref|NP_875100.1| Type I restriction-modification system methyltransferase subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237685|gb|AAP99752.1| Type I restriction-modification system methyltransferase subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 580

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 202/488 (41%), Positives = 292/488 (59%), Gaps = 30/488 (6%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L+ FIW  AE L  ++K +D+G+VIL FT+LRR++C LE  +  V EK  +    ++  
Sbjct: 5   NLSAFIWSVAELLRDNYKKSDYGQVILAFTVLRRIDCVLEAEKRGVCEKRTSHKAPSLKS 64

Query: 70  ESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++F      V     S     E     L   +   N+ +YI SFS   K IFE F+F + 
Sbjct: 65  KAFRLNQPDVNSCSPSLLGLKEI---ILDEGSISKNINAYIQSFSPTIKGIFESFEFETH 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL K  LL ++ + F+ I+LHP T+ +  M  I+E LIR+F    ++   +  TPR+V
Sbjct: 122 IDRLNKTNLLSQVTRKFTLIDLHPTTISNTEMGTIFEELIRKFAELSNDIQGEHFTPREV 181

Query: 184 VHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++L   LL   D +AL  E   +++++YDPT GTGG L+ A  H+       K    L+ 
Sbjct: 182 INLMVNLLFSKDKEALLAED--IVKSIYDPTAGTGGMLSVAEEHIKAINPSAK----LIV 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PE++A+C A MLIR       +D++ NI  G+TLS D    K++ Y LSNPPFG
Sbjct: 236 SGQEINPESYAICKADMLIRG------QDIN-NICLGNTLSHDHHAKKKYDYMLSNPPFG 288

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             W+K +  V+KE+++ G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVLS
Sbjct: 289 VDWKKVQKEVKKEYRDKGFSGRFGPGLPRVSDGSLLFLMHLISKMLPASKGGSRIGIVLS 348

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SP+F G AGSGESEIRR++LEND +EAI+ LP +LF+ T I+TY+WI++N+K   R+GK
Sbjct: 349 GSPMFTGSAGSGESEIRRYVLENDYVEAIIQLPQELFYNTAISTYIWIITNKKESSRKGK 408

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTFGY 475
           VQLI+ +     +R   G KR+ + D++  +I  I+     V  E     R+L     GY
Sbjct: 409 VQLIDCSTFSKKMRKSLGSKRQELRDNEISEITKIFNSFKEVKTEGKSICRILKTEELGY 468

Query: 476 RRIKVLRP 483
           + I V RP
Sbjct: 469 KLITVDRP 476



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 12/110 (10%)

Query: 566 RKDPRADPVTDVNGEWIPDTN----LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
           +KD + + +T   G++   T     L + E++P  E +  YF RE+  H PDA+I++   
Sbjct: 477 KKDIKGNVITIRKGKYKGSTQFDPELRDTESIPLSEPVDSYFKREILTHYPDAWINE--- 533

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              DK   ++GYEI FNR+FY +   R L+ I+ EL+ +    +TL +++
Sbjct: 534 ---DKT--KIGYEILFNRYFYNFPKIRSLEKINQELRDLFKVFSTLSKQI 578


>gi|171915568|ref|ZP_02931038.1| type I restriction-modification system methyltransferase subunit
           [Verrucomicrobium spinosum DSM 4136]
          Length = 591

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/492 (40%), Positives = 285/492 (57%), Gaps = 27/492 (5%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REKYLAFGGS 65
           LAN +W+ A+ L G +    + +V+LP T+LRR +C L  T++ V     R K     G 
Sbjct: 11  LANLVWQIADLLRGPYTPPQYERVMLPMTVLRRFDCVLARTKAKVLAEHSRRKDGKVQGD 70

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +D +   K AG  F+N S      L   S N   +L SYI  FS N + IF+ F+F   
Sbjct: 71  GLD-QLLNKAAGQRFHNRSPLDFDKLKGDSDNIEKHLVSYIKGFSANVRTIFDYFEFEKE 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I ++ ++ LLY I   FS ++L P  V    M  I+E+LIRRF  + +E A D  TPR+V
Sbjct: 130 IEKMRESNLLYLIVSKFSEVDLDPVRVRSEEMGLIFENLIRRFYEQANETAGDHFTPREV 189

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD L   +PG +R L DP CGTGG L +A N++ +    H     L  +
Sbjct: 190 IRLMAGLLFINDDDLLS-TPGAVRKLLDPACGTGGMLAEAQNYMRE----HHAAAQLYTY 244

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQ+      A   + MLI+ +  +   D   N++ G   + D F  + F Y ++NPPFG 
Sbjct: 245 GQDYNKRAFATAASEMLIKEVAHNGSGD---NVRFGDIFTDDRFKDETFDYVIANPPFGV 301

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LP--PNGGGRAAIV 359
            W+K +  V +EH +G+ GRF  GLP+++DGS+LF+ H+ +K E  LP     G R A+V
Sbjct: 302 DWKKQQREVVREHDSGK-GRFNAGLPRVNDGSLLFVQHMISKFEPVLPHLEKHGSRMAVV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLF G AGSGESEIR+W++E+D +EAI+ALP  +F+ T I TY+W+L+NRK + R+
Sbjct: 361 LSGSPLFTGGAGSGESEIRKWIIESDWLEAIIALPEQMFYNTGIGTYIWLLTNRKEKRRK 420

Query: 420 GKVQLINATDLWT------SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           GK++L++A   W       + R+ G KRR I+  Q  QIL +Y  R++G+ S+  D   F
Sbjct: 421 GKIRLVDARSFWKPGGSEENRRSLGDKRRHISAAQIEQILKLYDHRQDGEHSKTFDNADF 480

Query: 474 GYRRIKVLRPLR 485
           GY R+ V RPL+
Sbjct: 481 GYTRVTVERPLQ 492



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 8/99 (8%)

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           D +G+  PD  L ++EN+P  E I  YF REV PHVPDA++D+     KDK    VGYEI
Sbjct: 501 DKHGKPKPDAKLRDFENIPLKEDINAYFKREVLPHVPDAWMDR----SKDK----VGYEI 552

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           NFNR FY++ P R L +IDAE++  E +   L +E+  +
Sbjct: 553 NFNRHFYKFTPPRDLAEIDAEIEIAEKEFMRLFKEVTLQ 591


>gi|259502614|ref|ZP_05745516.1| type I restriction-modification [Lactobacillus antri DSM 16041]
 gi|259169429|gb|EEW53924.1| type I restriction-modification [Lactobacillus antri DSM 16041]
          Length = 699

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 227/704 (32%), Positives = 357/704 (50%), Gaps = 72/704 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            S ANFIW  A  L G +    +G VI+P T++RR ECALEPT+  V  +Y A       
Sbjct: 16  TSEANFIWSIANKLRGTYMPDKYGDVIIPMTIIRRFECALEPTKDKVLAQYEAM--PTYP 73

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             +  K++G+ FYNTS++ L  L +   N  +N +SY+A FS + + I  + D  S I +
Sbjct: 74  ARAMYKISGFQFYNTSKFDLQELCNDPDNINSNFKSYLAGFSADVQEILRNLDIESNIDK 133

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++K G LY + K FS ++L         M  I+E+LI RF   V  G   F T RD++ L
Sbjct: 134 MDKGGCLYNVVKAFSELDLSVAKFDSIKMGYIFENLIARFYQNVDAGQ--FYTGRDIIRL 191

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-HGQ 245
             +LLL        E   ++ T+ D  CGTGG L+ A  ++      H  P + V   GQ
Sbjct: 192 CVSLLLAEGSEDILEDNKVV-TVLDQACGTGGMLSTAYTYL-----KHLNPTVDVHLFGQ 245

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +++AV +A MLI+    D       N +   TL +D F  ++  + L NPPFG  W
Sbjct: 246 ELMGQSYAVGLAEMLIKDQNID-------NFKHADTLKEDCFPDQKMRFVLENPPFGTPW 298

Query: 306 ------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
                 +  +++V++E+  GE  R+  GLPK +D  +LF+    +KL+      GRAAI+
Sbjct: 299 GGKDAKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKLD----DNGRAAII 354

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + S LF G   SGES++RRWLLEND ++ IVA+PTDLF+ T +ATY+WILS  K+++R+
Sbjct: 355 ENGSSLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNKSQKRK 414

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GKVQ I+AT+++  +R   GKK+   + + R QI  +Y        S++ D   F YR  
Sbjct: 415 GKVQFIDATNIYEKLRKPLGKKKNEFSKENREQITKLYTDFVENDISQIHDNTEFIYREY 474

Query: 479 KVLRPLRMSFILDKTGLARL--------------EADITWRKLS--------------PL 510
            V++PL+ S+ + +  + ++              E   + +KLS              P+
Sbjct: 475 TVMQPLQRSYAITEQRIEKMLPNLNSFFDPVKFNELQESNKKLSARDVKKLTKFKKNKPI 534

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
           +      +   +  +IY    + + V E++ SN          K  +   ++   + D  
Sbjct: 535 YDQLISILRDNISDKIYKSPESFAPVAENLLSN-------IIDKKLLKKVVDGLSQMDKS 587

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE---KDKE 627
           A+   D  G  I D +  + E V     I+ Y  +EV P + DA   K F +E   K K 
Sbjct: 588 AEIQNDKKGNIIYDKDTADTEIVNIKTPIEQYMAKEVLPFISDA---KAFFEEDLGKKKP 644

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           + + G EI F R+FY+YQ  + ++ +   +  +E  I+  +  +
Sbjct: 645 VIKTGAEIPFTRYFYRYQMPQSVEKLQNMIDNLEQSISVEMNNL 688


>gi|50086400|ref|YP_047910.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter sp. ADP1]
 gi|49532376|emb|CAG70088.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter sp. ADP1]
          Length = 751

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 244/752 (32%), Positives = 369/752 (49%), Gaps = 115/752 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAF 62
             +   +W  A  + G ++   + +V+LP  +L R +  L P    ++  Y      L  
Sbjct: 18  GKIVGLVWSIANIIRGPYRPPQYRRVMLPLIVLGRFDAILAPYADEMKASYEKAVATLQD 77

Query: 63  GGSNIDLESFV-----KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115
              N+ L+  +     K    + YN S ++L  L         NL  YI  FS  AK IF
Sbjct: 78  KTPNVFLQKQLSQIADKDRKQNLYNISGFNLKKLLDDPDQFTANLTKYIDGFSPKAKDIF 137

Query: 116 EDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F+F+  I +L+ A  LYK+ + F      SG+ L P +V +  M  ++E L+R+F  +
Sbjct: 138 AKFEFAKEIEKLDDANRLYKVFQEFRNGLGESGLSLAPSSVSNLQMGYLFEELVRKFNEQ 197

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            +E A D  TPR+V+ L   L+ + D D L K   G+ R++YDPT GTGG L+++   + 
Sbjct: 198 ANEEAGDHFTPREVIELMVNLIFEEDQDELVK--AGVHRSIYDPTAGTGGMLSESEKFLK 255

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----- 283
               + KI   L  +GQE  PE++A+C + +LI+    +P    ++NI  G TL      
Sbjct: 256 KY--NDKIS--LDMYGQEYNPESYAICCSDLLIK---DEP----AENIVYGDTLGVKNAK 304

Query: 284 -------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                  +D    K FHY  SNPPFG +W+  KD +++E K G  GRFG GLP+I+DGS+
Sbjct: 305 EKDGYVPRDGHADKDFHYMFSNPPFGVEWKNQKDFIDEEEKQGFSGRFGAGLPRINDGSL 364

Query: 337 LFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           LF  H+ +K++  P  GG   R A+V + SPLF G AGSGES IRRW++END +EAI+AL
Sbjct: 365 LFAQHMISKMKASPENGGEGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDWLEAIIAL 424

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQI 452
           P  +F+ T I TY+WI+SN+K+E+R+GKVQLI+ T  +  + ++ G KR  ++     ++
Sbjct: 425 PDQMFYNTGIYTYIWIISNKKSEQRKGKVQLIDGTAHYQKMAKSLGNKRHELSKAHIAEL 484

Query: 453 LDIYVSRENGKFSRMLDYRT--------------FGYRRIKVLRPLRMSFILDKTGLARL 498
              Y   E+   S ++  +T              FGY ++ V RPLR++F +    +A L
Sbjct: 485 TKFYSKFEDQDTSALIQSKTGEAKICSKIFNNQDFGYLKLTVERPLRLNFTISAERIALL 544

Query: 499 EADITWRKL------------SPLHQSFWLD---ILKPMMQQIYPYGWA--ESFVKESIK 541
           +    +  L            S   Q+  L    I   +  +I    W   + F+K  + 
Sbjct: 545 DDQSAFTSLAKSKKVKDTAEISKEEQAGRLQQEAIKNALTAKISDQVWKNRDEFLK--VL 602

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599
               K L  K       A + A   +D  AD   D  G   PDT L + E V + + +  
Sbjct: 603 DPILKGLTFKLGAPVKKAILEALSERDQTADICKDSKGNIEPDTQLRDTELVAFPDHLTL 662

Query: 600 -----------------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
                                  + Y   EV PHV DA+I        D    +VGYEI 
Sbjct: 663 PLPVNYDKEPDLSKLLPLVKAHCEAYLKAEVLPHVADAWI--------DYSKTKVGYEIP 714

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
            NR FY Y+P R L++I AE+  +E +I  +L
Sbjct: 715 INRHFYIYEPPRPLEEIKAEIVQLEQEIMQML 746


>gi|289166195|ref|YP_003456333.1| type I restriction-modification system (N6 DNA methylase)
           [Legionella longbeachae NSW150]
 gi|288859368|emb|CBJ13304.1| putative type I restriction-modification system (N6 DNA methylase)
           [Legionella longbeachae NSW150]
          Length = 711

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 242/725 (33%), Positives = 374/725 (51%), Gaps = 84/725 (11%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSN 66
           ++ NFIW  A+D+  D +    +  VILP T++RRL+  LEPT+ +V   +K L   G  
Sbjct: 8   TITNFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDALLEPTKESVLSMKKQLDNAGIA 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSS 122
               +  + +  +FYN S ++L  L +      L    ESY+  FS N + I E F F +
Sbjct: 68  NQDAALCQASDEAFYNCSPFTLRDLKNRTKMQQLKADFESYLDGFSPNVQEILEKFKFRN 127

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIYEHLIRRFGS 168
            I+ L +A +L  + + F    I L P  + D              M  ++E LIRRF  
Sbjct: 128 QISTLVEADILGALIEKFLNPNINLSPKPIYDTEGNERLPGLDNHAMGTVFEELIRRFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   ++  P   +  E       +YD  CGTGG LT A   + 
Sbjct: 188 ENNEEAGEHFTPRDVVKLMADVIFLP---IAHEIESGTYLVYDGACGTGGMLTVAEERLQ 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +  +       +  +GQE++PET+A+  A +L++   ++     ++NI+ GSTLS D F 
Sbjct: 245 ELATEAGKEVSIHLYGQEIQPETYAIAKADLLLKGEGAE-----AENIKYGSTLSADAFV 299

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--RFGPG---------LPKISDGSML 337
             +F + LSNPP+GK W+ D   +E+    G++   RF            + + SDG ++
Sbjct: 300 SNQFDFMLSNPPYGKSWKTD---LERMGGKGDIKDPRFVISYADEPEYEMITRSSDGQLM 356

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++   K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++
Sbjct: 357 FLVNKLMKMKESSKLGSRIAHVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENI 416

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+NRK++ER+GKVQLI+AT  + S+R N GKK   ++D+   QI ++ 
Sbjct: 417 FYNTGIATYIWVLTNRKSQERKGKVQLIDATKWYQSLRKNLGKKNCELSDEHIAQICNLV 476

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           V     + S+M     FGY +I V RPLR+S  L +  L++ +      K + L     +
Sbjct: 477 VHPIETEQSKMFPNEAFGYYKITVERPLRLSVQLSEKQLSKFKQQCIAAKETGLFS--IV 534

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV-- 574
           ++L   + +  P+     F+ +   +N AK++ VK S   +    +     D  A+PV  
Sbjct: 535 EVLANHLGE-GPHKNYNQFINQL--NNHAKSMSVKLSAKNVKFLRDNLATVDDEAEPVIK 591

Query: 575 ------------------TDVNG-----EWIPDTNLTEYENVPYLE--SIQDYFVREVSP 609
                              ++NG     E+  DTNL + E VP LE   I  +F REV P
Sbjct: 592 KIHKLGSVNANPINGLFEMNINGKDVIVEYEADTNLRDSEQVPILEENGIPAFFQREVLP 651

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           + PDA+I        D     +GYEI+F + FY+  P R L++I A++  +E +   LL 
Sbjct: 652 YAPDAWI--------DISKNTIGYEISFTKHFYRPTPMRTLEEIKADIYAIERETEGLLG 703

Query: 670 EMATE 674
           E+  E
Sbjct: 704 EIIGE 708


>gi|257064599|ref|YP_003144271.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792252|gb|ACV22922.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 586

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 306/569 (53%), Gaps = 31/569 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + +++FIW  A+ L   FK  ++G +ILPFT++RRL+  LEPT+ AV E         + 
Sbjct: 4   SEISSFIWGTADLLRSSFKQHEYGDIILPFTVMRRLDVVLEPTKQAVLEAAAKKMPDALR 63

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K AG  FYNTSE+++  L S     R NL  Y+ SFS     IF+ F     I  
Sbjct: 64  DTMLKKAAGVDFYNTSEFTMRGLLSDADGIRENLTKYVTSFSPEIADIFDKFKIFDVIKD 123

Query: 127 LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L+   LL+ + + F    I+L P ++ +  M +IYE LIRRF    +E A +  +PRD +
Sbjct: 124 LDDNDLLFLVVERFCNPRIDLSPASISNADMGDIYEELIRRFSEVSNETAGEHFSPRDGL 183

Query: 185 HLATALLL--DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
            LA  LL+  + DD      P  I  + DP  GTGG LT   + VA+      +    V 
Sbjct: 184 RLAAELLVVGEMDDLT---QPNRIVKVCDPCAGTGGALTVFADRVAEINPQATV----VT 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           + QE+  +++A+C +  +++            N+  G TL+ D   G+ F Y +SNPP+G
Sbjct: 237 YAQEINGQSYAICKSDTILKGGNI-------ANVHLGDTLADDQMPGETFGYQISNPPYG 289

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             W+K + AV KEH+  G  GRFG GLP+ISDG +LF+ H+  K+     GGGR A+ L+
Sbjct: 290 VDWKKSQAAVRKEHEQLGFAGRFGAGLPRISDGQLLFVQHMVAKMRPVDEGGGRIAVFLN 349

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESE+RR+LL++DL+EAIVA+P D FF T IATY+W+L N K   R+GK
Sbjct: 350 GSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNTGIATYIWVLDNTKEPRRKGK 409

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRI 478
           VQLINA  ++T +R   G KR    D+Q  QI+ +Y   E+   K S++     FGY  +
Sbjct: 410 VQLINANGIYTKMRKSLGSKRNEFTDEQIAQIVGLYNDFEDADPKLSKVFANEEFGYVTV 469

Query: 479 KVLRPL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            V RP    R   + DK G    + ++   +  PL Q    D+ + M +++ PY      
Sbjct: 470 DVRRPQRDERGEIVRDKKGRPVADKELNDTENIPLTQ----DVDEYMAREVLPYAPDAWI 525

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAF 564
                K  +   LK   +  F + F   F
Sbjct: 526 EPRKQKKGQLLELKDGGTVGFEIPFTRHF 554



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 8/109 (7%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDK------I 619
           ++D R + V D  G  + D  L + EN+P  + + +Y  REV P+ PDA+I+        
Sbjct: 475 QRDERGEIVRDKKGRPVADKELNDTENIPLTQDVDEYMAREVLPYAPDAWIEPRKQKKGQ 534

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
            ++ KD   G VG+EI F R FY+Y P R   +I AE++ +EA IA  L
Sbjct: 535 LLELKDG--GTVGFEIPFTRHFYEYTPLRPSSEIFAEIRELEASIAEKL 581


>gi|222444444|ref|ZP_03606959.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434009|gb|EEE41174.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii
           DSM 2375]
          Length = 541

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 206/570 (36%), Positives = 320/570 (56%), Gaps = 56/570 (9%)

Query: 124 IARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I  L +  +L+K+ + FS   ++L P  V +  M  I+E LIRRF  + +E A +  TPR
Sbjct: 5   INTLSEKNILFKLVRKFSETTVDLSPKAVSNHEMGTIFEELIRRFSEQSNEEAGEHFTPR 64

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-L 240
           DVV L T LL     A  +   G I+ +YDP CGTGG LT    ++ +       P I +
Sbjct: 65  DVVKLMTELLF----AGEENESGSIKLVYDPACGTGGMLTSCKEYIQNIN-----PDIDI 115

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHYCLSNP 299
           V +GQE++ E +A+C A ML++        + ++NI+   STLS D  +G++F Y +SNP
Sbjct: 116 VLYGQEIQDEIYAICKADMLMKG-------EKAENIKGPYSTLSNDKLSGEKFDYMISNP 168

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+G+ WE D D V+ E + G  GRFG GLP+ SDG +LF+ H+ +K++   N   R AI+
Sbjct: 169 PYGRDWETDADEVKSEAEQGYNGRFGAGLPRKSDGQLLFIQHMISKMK--TNDKSRIAII 226

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + SPLF G AGSGES IR+W+ END +EA++ALP  LFF T I TY+WIL+N+KT  R+
Sbjct: 227 TNGSPLFTGDAGSGESNIRKWIFENDYLEALIALPDQLFFNTGIGTYIWILTNKKTPNRQ 286

Query: 420 GKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           G+VQLI+A   +  +R N G KR  I +D   +I+  Y         ++ +   FGY +I
Sbjct: 287 GRVQLIDARKEYAGMRKNLGNKRHTIPEDSITKIIKTYNEFAESDKVKIYNNEDFGYTKI 346

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLS-----------------PLHQSFWLDILKP 521
            V R +++++ + +  L  L +   ++KL+                    Q    + L  
Sbjct: 347 IVERLMQLNYQVTQERLENLYSYSAFKKLAESKSKDPKTKIADETEGKKQQEEIKEALLT 406

Query: 522 MMQQIYP-YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
           +   +Y  +   E+ VK+++   + K        +FI   I      D +A  VTD  G+
Sbjct: 407 IGDDLYTDWDAFEAKVKQALNQFDLKP-------AFIKNIIEKLSEHDDKAGYVTDKKGK 459

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
              D+NL + E +P +++I DYF  EV  + PDA+    + ++K+K    +GYEINF ++
Sbjct: 460 PKADSNLRDAEKIPLVQNIDDYFEEEVLKYYPDAW----YENKKNK----IGYEINFTQY 511

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           FY Y+P R L++I++++  V A+I  LL+E
Sbjct: 512 FYIYEPPRSLEEIESDISKVTAEIQELLKE 541


>gi|332885122|gb|EGK05374.1| hypothetical protein HMPREF9456_02873 [Dysgonomonas mossii DSM
           22836]
          Length = 600

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 194/503 (38%), Positives = 299/503 (59%), Gaps = 47/503 (9%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNID 68
           A+ IW+ A+ L GD+K +D+GKVILP T+LRRL+C LEPT+  V +   K  +   +  D
Sbjct: 8   ADLIWRVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLPKVSSLKDNAKD 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           L +  K+AG++F+N S+++   L +   N   NL  YI  FS +A+ I E F+F   I R
Sbjct: 68  L-ALNKIAGFNFHNRSQFNFQKLVADPNNIGANLRQYINGFSTSAREIIEYFNFDDQIDR 126

Query: 127 LE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++  +  +L+++ K F  I+L    +    M  ++E LIR+F  + +E A +  TPR+++
Sbjct: 127 MDDPRTDILFRVVKAFQAIDLS--DMDSMEMGYVFEELIRKFAEQSNETAGEHFTPREII 184

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   LL   D  +  +  G+++T+YDP CGTGG L+ A  +V +     +    L   G
Sbjct: 185 RLMVNLLFIEDREMLTQK-GIVKTMYDPACGTGGMLSIAEQYVKELNPDAE----LKVFG 239

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ PE++A+C + MLI+    +P      NI+ G+T + D    ++F Y LSNPPFG  
Sbjct: 240 QEINPESYAICKSDMLIKG--QNP-----GNIKFGNTFTVDGLDDEKFDYMLSNPPFGVD 292

Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  ++ E +N G  GRFG GLP+I+DGS+LFL H+ +K++     G R  IV + S
Sbjct: 293 WKKAEKIIKTEAENKGMSGRFGAGLPRINDGSLLFLQHMVSKMK---GSGTRIGIVFNGS 349

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G A SGES IR+W++END +EA+VA+P  LF+ T I+TY+WI++N K++ER+GK+Q
Sbjct: 350 PLFTGAAESGESNIRKWIIENDWLEAVVAMPDQLFYNTGISTYVWIVTNHKSKERKGKIQ 409

Query: 424 LINATD----------------LWTSI-RNEGKKRRIINDDQRRQ----ILDIYVSRENG 462
           LINAT                  W  + R+ G KR+ I ++   +    I  IY + +  
Sbjct: 410 LINATGTKDEELLKEGKLEFNRFWRKMDRSLGNKRKAIAENGNTKGIGFITQIYGNFQEN 469

Query: 463 KFSRMLDYRTFGYRRIKVLRPLR 485
           +F ++L    FGY R+ V +PLR
Sbjct: 470 EFCKILPNEYFGYWRVTVEQPLR 492



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 18/102 (17%)

Query: 574 VTDVNGEWIPDTNLTEYENVPYL----------ESIQDYFVREVSPHVPDAYIDKIFIDE 623
           V D N +  P+T+L  YEN+P+L          ++I++YF  EV PH+P+A+ID      
Sbjct: 498 VKDRNKQPKPNTSLRNYENIPFLKKDANGKLIPQTIEEYFDAEVKPHLPEAWIDH----- 552

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
                 ++GYE+NF ++FY+++P R L DI A++  +E +I 
Sbjct: 553 ---SKTKIGYEVNFTKYFYEFKPLRALADIRADILALEEEIV 591


>gi|303235379|ref|ZP_07321996.1| N-6 DNA Methylase [Finegoldia magna BVS033A4]
 gi|302493500|gb|EFL53289.1| N-6 DNA Methylase [Finegoldia magna BVS033A4]
          Length = 705

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 233/705 (33%), Positives = 358/705 (50%), Gaps = 73/705 (10%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  L G +    +G VI+P T++RR EC LE T+ AV EKY      +    +
Sbjct: 22  ANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKYT--DNKSYPERA 79

Query: 72  FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             +++G  FYNTS ++L  L +   N ++N   YI SFS N   I    +  + I ++ K
Sbjct: 80  MYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQLEIKTHIKKMNK 139

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              L+ + K FS ++L  +T     M  I+E+LI RF   V  G   + T RD++ +   
Sbjct: 140 ENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRFYQNVDAGQ--YYTGRDIIKMMVY 197

Query: 190 LLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++  +  D ++ E  G + T+ D   GT G LT A NH+ +      I       GQE+ 
Sbjct: 198 VITAEGCDDIYDE--GKVITIADQAAGTSGMLTTAYNHLHNLNPKADIRLF----GQEIM 251

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-K 307
            +++AV +A MLI+  ++       +N +   T  +D F   +  + L NPPFG  W  K
Sbjct: 252 GQSYAVGLAEMLIKGQDA-------RNFKHADTFKEDFFEDTKMRFVLENPPFGMSWGGK 304

Query: 308 D-----KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           D     + AV + HK G   R+  GLP   D  +LF+    +K++   +  GRAAI+ + 
Sbjct: 305 DAKAGQEQAVLENHKRGIDSRWPAGLPSSGDAQLLFMQSAIDKMD---DEHGRAAIITNG 361

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLFNG   SGES+IRRWLLENDLIEAI+A+PT+LF+ T IATY+WILS  K +ER GK+
Sbjct: 362 SPLFNGGVSSGESQIRRWLLENDLIEAIIAMPTELFYNTGIATYVWILSKNKRQERIGKI 421

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT+++ ++R   G KR+    + R+ I  +Y        S++ +   F YR   V+
Sbjct: 422 QLIDATEIYHTLRKSLGNKRKEFTAEDRKTITKLYSDFVENDKSKIYENEEFIYREYTVM 481

Query: 482 RPLRMSFILDKTGLARLEA--------------DI-----TWRKLSPLHQSFWLDILKPM 522
           +PL+ S+ ++   +  LE               DI     T  KL+   ++     LK  
Sbjct: 482 QPLQRSYAINDERIENLETSGKLNSFYDKTKHDDILEKQETSEKLTKTEKNN----LKKY 537

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTL------------KVKASKSFIVAFINAFGRKDPR 570
            +    Y      +KE+I   +  ++            ++  +K+     I+     D  
Sbjct: 538 TENEKTYNKIFEILKENITDKKYMSVDEFEPVVNDLLSELSLNKTVFNNIIDGLSEMDKE 597

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE----KDK 626
           AD  TD  G  I D +  + E V   E+I DY  REV PH+PDA   K F +E    K+ 
Sbjct: 598 ADIQTDKKGNVIYDKDTKDTEIVNVRENIDDYMKREVLPHIPDA---KSFFEEDVTLKNP 654

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +I + G EI F R+FY+Y+  R  +++  E   +E  +   ++E+
Sbjct: 655 KI-KTGAEIPFTRYFYKYEAPRPSEELAQEFLELEDIVNQKVKEL 698


>gi|154508214|ref|ZP_02043856.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797848|gb|EDN80268.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC
           17982]
          Length = 708

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 242/705 (34%), Positives = 362/705 (51%), Gaps = 73/705 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S A+  +FIW  A  L   +    +  VI+P T++RR ECAL PT+  V  ++      +
Sbjct: 22  SVANEVSFIWSIANKLRPTYSSDKYKDVIIPMTIIRRFECALAPTKDKVVAQHEKI--PS 79

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAK----AIFEDFDF 120
              ++  ++AG+SFYNTS ++L  L     N   N ++YI  FS N      ++ +  DF
Sbjct: 80  YPYKAMCQIAGFSFYNTSRFTLERLLDDPDNIAANFKAYIEGFSPNVNDLLMSVEKGLDF 139

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  I +++K   LY + K FS ++L P T+    M  I+E LIR+F SE +E  E + T 
Sbjct: 140 AKQIDKMDKGNRLYGVVKAFSELDLDPRTIDSIKMGYIFEELIRKF-SENAEAGEHY-TG 197

Query: 181 RDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           RD++ L  ++LL +  D +F +  G + T+ D  CGTGG L+ A N++      H+  P 
Sbjct: 198 RDIIKLMVSILLAEGCDDIFDD--GKVITILDQACGTGGMLSTAFNYI------HRFNPT 249

Query: 240 --LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +   GQE  PE++A+C+A MLI+  ++D       NI+   T+  D FT  +  + + 
Sbjct: 250 ADIRLFGQENNPESYAMCLAEMLIKDQDAD-------NIRFQDTMLADCFTDIKMRFVIE 302

Query: 298 NPPFGKKWE-KD-----KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           NPPFG+ W  KD     ++AV  EH+ G  GR+G G P   D  MLFL    +K++ P  
Sbjct: 303 NPPFGQAWGGKDAADGVENAVIAEHEKGFSGRWGAGTPGAGDMQMLFLQSAVDKMD-PER 361

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAAI+ + SPL+ G  GSGES+IRRWLLE DLIEAI+ALP DLF+ T IATY+WILS
Sbjct: 362 G--RAAIIENGSPLYTGEVGSGESQIRRWLLEQDLIEAIIALPVDLFYNTGIATYIWILS 419

Query: 412 NRKTEERRGKVQLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             K  ER+GKVQLI+A+ ++    +  GKK+  I  D R  I  +Y         ++   
Sbjct: 420 KNKRAERKGKVQLIDASQIFHKLRKGLGKKKNEITPDDREHITRLYADFAENDLCQIYPN 479

Query: 471 RTFGYRRIKVLRPLRMSF------------------ILDKTGLARLEA--DITW---RKL 507
             F YR   V++PL+ S+                  + + T +A+LE   ++T    R+L
Sbjct: 480 EEFIYREYTVMQPLQRSYGITEERIENLINGGYLNSLFNPTKVAKLEQKEELTAKEEREL 539

Query: 508 SPLHQS--FWLDILKPMMQQIYPYGW-AESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           +   Q    +  I+  +   I    W A       +KS   +T+        +    +  
Sbjct: 540 AKHRQGEPLYTAIIDTLRAAITDQVWLAPKPFTAHLKSLVRQTV---VDSKLLAKIADGL 596

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE- 623
              D  A+   D  G  I DT   + E VP  E I +Y  REV P++PDA   K F +E 
Sbjct: 597 SLMDKSAEIQRDRKGNTIYDTATKDVERVPAEEDITEYMQREVLPYIPDA---KAFFEED 653

Query: 624 --KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
             K K + + G EI F R+FY Y+     +    E   +E +I+ 
Sbjct: 654 LSKKKPVVKTGAEIPFTRYFYSYETPVTAEIYAQEFMRLEQEISA 698


>gi|113477872|ref|YP_723933.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
 gi|110168920|gb|ABG53460.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
          Length = 677

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 234/674 (34%), Positives = 350/674 (51%), Gaps = 65/674 (9%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
            + +FIW  A+D+  D +    +  VILP T++RRL+C LEPT++AV ++   +    I 
Sbjct: 8   GIVSFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDCLLEPTKAAVLKENNFYENMEIS 67

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           D     +   Y FYNTS ++L  L     + + NL  Y+  FSDN + I   F F + + 
Sbjct: 68  DKSGLTEFTKYPFYNTSGFTLKKLLDEPRSIKENLIDYLNGFSDNVQEIINKFKFRNQLE 127

Query: 126 RLEKAGLLYKICKNF--SGIELHPDTVPDRV------------MSNIYEHLIRRFGSEVS 171
            L +   LY + + F  S I L P+   D+             M  ++E LIR+F  E +
Sbjct: 128 TLVEHKRLYALIQKFTDSDINLSPEPRKDKKGKVIQPGLSNLGMGYVFEELIRKFNEENN 187

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           E A +  TPRD++ L   L+  P     K +  ++   YD  CG+GG LT+A N + +  
Sbjct: 188 EEAGEHFTPRDIIKLMVNLIFMPVKDQIKNTTYLV---YDCACGSGGMLTEAENFLLELA 244

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +      ++   GQE+ PET+A+C A MLI+  E+D       NI+  STL+ D F    
Sbjct: 245 TGMGKKVVIHLFGQEVNPETYAICQADMLIKVKETD-------NIKYASTLASDGFPDFT 297

Query: 292 FHYCLSNPPFGKKWEKDKDAV----EKEHKNGEL-----GRFGPGLPKISDGSMLFLMHL 342
           F + L+NPP+GK W+ D+D +    +KE K+        G     +P+ SDG +LFL++ 
Sbjct: 298 FDFMLANPPYGKSWKVDQDKILVGRKKEVKDNRFLVKHQGEELQLIPRSSDGQLLFLVNK 357

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +K++     G R AIV + S LF G AGSGES IRRW++END +E IV LP ++F+ T 
Sbjct: 358 LSKMKDSTKLGSRIAIVHNGSALFTGDAGSGESNIRRWIIENDWLECIVGLPLNMFYNTG 417

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN 461
           IATY+WI+SN+K+ ERRGKVQLI+  + +  +R   G K   +  +   +I + ++    
Sbjct: 418 IATYIWIISNKKSVERRGKVQLIDGREWYGKLRKSLGSKSCELRGEDIDRITEEFLDFSE 477

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
              SR+ D   FG+ +I V RPLR SF +    +      +    L        +DIL+ 
Sbjct: 478 SDNSRIFDNEDFGFHKIVVERPLRFSFQVTAARVQEFGEKMGDDLLGV------VDILRG 531

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKA---SKSFIVAFINAFGRKDPRADPV---- 574
           +  +     W  + VK   +    K LKV+     K  +      F  KD R + V    
Sbjct: 532 LFGE--EVQWDFNLVKRDFE----KALKVEGWNLKKRDLDLIYQIFTEKDERGEAVILKQ 585

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
           T     +  D  L + ENVP  E+IQ+YF REV PHV DA+ID       DK +   GYE
Sbjct: 586 TKKGVVYQADAELRDTENVPLKENIQEYFEREVLPHVSDAWID------FDKVVR--GYE 637

Query: 635 INFNRFFYQYQPSR 648
           I+F ++FY++Q  R
Sbjct: 638 ISFTKYFYKFQKLR 651


>gi|302037227|ref|YP_003797549.1| putative type I restriction system, N-6 adenine-specific DNA
           methylase HsdM [Candidatus Nitrospira defluvii]
 gi|300605291|emb|CBK41624.1| putative Type I restriction system, N-6 adenine-specific DNA
           methylase HsdM [Candidatus Nitrospira defluvii]
          Length = 714

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 246/728 (33%), Positives = 372/728 (51%), Gaps = 95/728 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-- 67
           +ANFIW  A+D+  D +    +  VILP T+LRRL+  LEPT+ AV +  ++   + I  
Sbjct: 9   IANFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMKVSLDKAKIVH 68

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSST 123
             ++  + AG +FYNTS+++L  L + +++  L    E+Y+  FS N + I E F+F + 
Sbjct: 69  QDQALRQAAGQAFYNTSKFTLKDLKARSSQQQLRADFEAYLDGFSPNVQDILEKFEFRNQ 128

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIYEHLIRRFGSE 169
           I RL KA  L  +   F    I L P+ V +              M  ++E L+RRF  E
Sbjct: 129 IPRLSKADALGTLINKFLSPDINLSPNPVKNNDGSMKHPGLDNHAMGTVFEELVRRFNEE 188

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRD V L   L+  P   +  +       LYD  CGTGG LT A   +  
Sbjct: 189 NNEEAGEHWTPRDAVKLMARLIFLP---IADQIQSGTYLLYDGACGTGGMLTVAEETLQQ 245

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
             + H+       +GQE+  ET+A+  A +L++        D + NI  G   STL+ D 
Sbjct: 246 LAAEHRKKVATHLYGQEINAETYAIAKADLLLK-----GEGDAADNIVGGPEYSTLANDA 300

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-------------LPKISD 333
           F  + F + LSNPP+GK W+ D      E   G+ G   P              + + SD
Sbjct: 301 FRSREFDFMLSNPPYGKSWKSDL-----ERLGGKEGIKDPRFMIQHAGEAEYSLITRSSD 355

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G MLFL ++ +K++     G R A V + S LF G AG GES IRRW++END +EAIVAL
Sbjct: 356 GQMLFLANMLSKMKHKTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIVAL 415

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T IATY+W+L+NRK   R+GKVQLI+AT  +  +R N GKK   ++D+  R+I
Sbjct: 416 PLNMFYNTGIATYIWVLTNRKPAHRQGKVQLIDATQWFKPLRKNLGKKNCELSDEDIRRI 475

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
            D ++  +  + S++     FGY ++ V RPLR+   LD   L+   A        PL  
Sbjct: 476 CDTFIDFKESEQSKIFPNEAFGYWKVTVERPLRLRVDLDPKSLSAFRAACVDEDEEPLA- 534

Query: 513 SFWLDILKPMMQQIYPYGWAESF--VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
               ++++ +   + P G   SF    E+++++ A    VK + +      +   ++D +
Sbjct: 535 ----NVVERVAASLGP-GPHLSFNTFMEAVEAD-ANEHGVKLTAARKKLLKDRLAKRDEK 588

Query: 571 A---------------DPV-----TDVNG-----EWIPDTNLTEYENVPYLE--SIQDYF 603
           A               DP+       V+G     E+ PDT L + E +P LE   I  + 
Sbjct: 589 AAEIIGKTYKPGKVKPDPLRGLFEATVDGKPCVVEYEPDTELRDTEQIPLLEEGGIAAFI 648

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV PHVPDA+    ++ E  K     GYEI+F R+FY+ QP R L+ I A++  +E +
Sbjct: 649 RREVLPHVPDAW----YVPESVK----TGYEISFTRYFYKPQPLRSLEAIRADILALEKE 700

Query: 664 IATLLEEM 671
              LL E+
Sbjct: 701 TEGLLGEI 708


>gi|325289014|ref|YP_004265195.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964415|gb|ADY55194.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 599

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 199/503 (39%), Positives = 296/503 (58%), Gaps = 47/503 (9%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNID 68
           A+ IWK A+ L GD+K +D+GKVILP T+LRRL+C LEPT+  V +   K  +   S  D
Sbjct: 8   ADLIWKVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLPKVESLKESAKD 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           + +  K+AG++F+N S+ +   L +   N   NL +YI  FS +A+ I E F+F   I R
Sbjct: 68  I-ALNKIAGFNFHNRSQLNFDKLIADPNNVSVNLRNYINGFSSSAREIIEYFNFDDHIDR 126

Query: 127 LE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++  K  +L+++ K F  I L    +    M  ++E LIRRF  + +E A +  TPR+V+
Sbjct: 127 MDDPKTDILFRVLKAFQEIGLT--DMDSMEMGYVFEDLIRRFAEQSNETAGEHFTPREVI 184

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   LL   D  +  +  G+++TLYDP CGTGG L+    +V +     +    L   G
Sbjct: 185 RLMVNLLFIEDKDILTQE-GIVKTLYDPACGTGGMLSVGEQYVKELNPKAE----LKVFG 239

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ PE++A+C + MLI+    +P      NI+ G+T + D    ++F Y LSNPPFG  
Sbjct: 240 QEINPESYAICKSDMLIKG--QNP-----SNIKFGNTFTVDGLEEEKFDYMLSNPPFGVD 292

Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  ++ E  N G  GRFG GLP+I+DGS+LFL H+ +K++L    G R  IV + S
Sbjct: 293 WKKAEKIIKAEADNKGMNGRFGAGLPRINDGSLLFLQHMISKMKL---SGTRIGIVFNGS 349

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G A SGES IR+W++END +EA++ALP  LF+ T I+TY+WI++N K+EER+GKVQ
Sbjct: 350 PLFTGAAESGESNIRKWIIENDWLEAVIALPDQLFYNTGISTYIWIINNSKSEERKGKVQ 409

Query: 424 LINATD----------------LWTSI-RNEGKKRRIINDDQRRQ----ILDIYVSRENG 462
           LINAT                  W  + R+ G KR+ I ++   +    I  +Y + E  
Sbjct: 410 LINATGAKDEELTKEGKLDFNRFWQKMDRSLGDKRKKIAENGNTKGIGFITQLYGNFEEN 469

Query: 463 KFSRMLDYRTFGYRRIKVLRPLR 485
           +F ++     FGY RI V +P++
Sbjct: 470 EFVKIYPNEFFGYWRITVEQPMK 492



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 18/100 (18%)

Query: 574 VTDVNGEWIPDTNLTEYENVPYL----------ESIQDYFVREVSPHVPDAYIDKIFIDE 623
           V    G+  PDT+L +YEN+P+L          ++I++YF  EV PH+ +A+ID      
Sbjct: 497 VVKSKGQPKPDTSLRDYENIPFLKKGSDGNLIPQTIEEYFETEVKPHLLEAWIDH----- 551

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
                 ++GYEINF ++FY+++P R L DI A++  +E +
Sbjct: 552 ---SKTKIGYEINFTKYFYEFKPLRALADIKADILALEEK 588


>gi|110639316|ref|YP_679525.1| restriction/modification methyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281997|gb|ABG60183.1| restriction/modification methyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 783

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 251/794 (31%), Positives = 393/794 (49%), Gaps = 155/794 (19%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG----- 64
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+ +AF       
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEE-MAFQKDEAKF 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDF 118
           +  D     + +GY FYNTSE++L  L  T T N      N E Y+  +S N K I E F
Sbjct: 68  TEWDENGLRQASGYVFYNTSEWTLQRLHDTATNNQQILQANFEDYLKGYSGNVKEIIEKF 127

Query: 119 DFSSTIARLEKAGLLYKICKNFSG--IELHP--DTVPDRV---------MSNIYEHLIRR 165
           +    +  +    +L  + + F+   I L P     PD           M  ++E LIR+
Sbjct: 128 NLKRQVQHMASKDVLLNVLEKFTSSYINLTPFEKNDPDGRKLPPLSNLGMGYVFEELIRK 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  + +E A +  TPR+V+ L T ++ +P     K+    + T+YDP CG+GG LT++ N
Sbjct: 188 FNEDNNEEAGEHFTPREVIDLMTHIIFEP----IKDKLPPVMTIYDPACGSGGMLTESQN 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + D     K    +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS +
Sbjct: 244 FIKDEDGEIKAKGDVYLYGKEINDETYAICKSDMMIKG--NNP-----ENIRVGSTLSTN 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD-------KDAVEKEHKNGELGRFG-----PGLPKISD 333
            F G  F + LSNPP+GK W  +       KD ++   K      +G        P+ SD
Sbjct: 297 EFAGTTFDFMLSNPPYGKSWASEQKFIKDGKDIIDPRFKIKLQNYWGIEEEADATPRSSD 356

Query: 334 GSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           G +LFLM + NK++       G R A V + S LF G AG GES IRR+++END +EAIV
Sbjct: 357 GQLLFLMEMVNKMKPLSQSKLGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDWLEAIV 416

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK---------R 441
            +P +LF+ T I TY+WILSN K+ +R+GKVQLI+A  ++  +R N G K         R
Sbjct: 417 QMPNNLFYNTGITTYIWILSNNKSNKRKGKVQLIDAGFMFRKLRKNLGNKNCEFAPEHIR 476

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP--LRMSFILDK------- 492
            I++  ++ Q +D  V  E G  S++ D   FGY ++ + RP  L+  F  ++       
Sbjct: 477 EIVSVYEKMQAVDRKVDDEQGISSKVFDNTDFGYYKVTIERPKRLKAQFTAERIEELRFD 536

Query: 493 -------------------TGLARLE-ADITWRKLSPLH-----------QSFW---LDI 518
                              T +A+ E A I W + + L+           Q+ W   LD+
Sbjct: 537 KTLREPMAWAYETYREKVYTEIAKHEKAIIEWCEKNELNLNAKQTKTLVTQATWQKQLDL 596

Query: 519 LKPMMQQIYPYGWAE----SFVKESI-KSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
           +   M  +   G  E    +  KE + ++  AK LK+ +S+    A +NA    D  A+ 
Sbjct: 597 VTLAMDLMKKIGSKEFNDFNLFKERVDEALAAKKLKLSSSEK--NAILNAVSWYDADAEK 654

Query: 574 V---------------------------------TDVNGEWI---PDTNLTEYENVPYLE 597
           V                                 T+  GE++    ++NL + ENVP  E
Sbjct: 655 VVKGTTKLAGDKLKELLAYLGCKEKELGDYGYFATEKKGEYLEYETESNLRDTENVPLKE 714

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           +I  YF+REV PHV +A+I+         +  ++GYEI+FN++FY+++P R ++D+ A++
Sbjct: 715 AIYTYFLREVKPHVGEAWINL--------DATKIGYEISFNKYFYKHKPLRSIEDVTADI 766

Query: 658 KGVEAQIATLLEEM 671
             +E +   L+ E+
Sbjct: 767 LALEKESDGLIAEI 780


>gi|322420421|ref|YP_004199644.1| N-6 DNA methylase [Geobacter sp. M18]
 gi|320126808|gb|ADW14368.1| N-6 DNA methylase [Geobacter sp. M18]
          Length = 710

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 249/727 (34%), Positives = 375/727 (51%), Gaps = 88/727 (12%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSN 66
           S+ NFIW  A+D+  D +    +  VILP T++RRL+  LEP++  V   +K L   G  
Sbjct: 8   SIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAGIA 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSS 122
               +  + AG +FYN S ++L  L +   +  L    E+Y+  FS N + I + F F +
Sbjct: 68  NQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKFRN 127

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIYEHLIRRFGS 168
            I  L +A +L  + + F    + L P  V D              M  I+E LIRRF  
Sbjct: 128 QIPTLIEADILGHLIEKFLDGRVNLSPKPVQDVDGNEILPALDNHSMGTIFEELIRRFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           E +E A +  TPRDVV L   L+  P  DD    ES   +  +YD  CGTGG LT A   
Sbjct: 188 ENNEEAGEHFTPRDVVKLMADLIFLPVADDI---ESGTYL--VYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+    H     +   GQE++PET+A+  A +L++   ++     ++N++ GSTLS D 
Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAE-----AENMKYGSTLSSDA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--RF---GPGLP------KISDGS 335
           F  + F + LSNPP+GK W+ D   +E+    G++   RF     G P      + SDG 
Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTD---LERLGGKGDIKDPRFVTQHGGDPEYKMITRSSDGQ 354

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           ++FL++  +K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP 
Sbjct: 355 LMFLVNKLSKMKHTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPE 414

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILD 454
           ++F+ T IATY+W+L+NRK++ RRGKVQLI+AT+ +  + RN GKK    +++  R I D
Sbjct: 415 NMFYNTGIATYIWVLTNRKSDTRRGKVQLIDATEWYVPLRRNLGKKNCEFSEEHIRAICD 474

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           + V+      S++     FGY ++ V RPLR++  L    L R E      K  PL    
Sbjct: 475 LVVNPVETDKSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERACAKAKEEPLAN-- 532

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK---------------SFIVA 559
            L         + P+    +F+       +   +K+ A +               + ++ 
Sbjct: 533 -LASRVAEALGVGPHLDFNAFMNAVEADADKHGVKLTAKRKKLLQSDLCDTREDAAPVLK 591

Query: 560 FINAFGRKDPRADPV-----TDVNG-----EWIPDTNLTEYENVPYLE--SIQDYFVREV 607
            ++  G+  P  DP+      +VNG     E+ PDT L + E VP LE   I+ +  REV
Sbjct: 592 KVHKPGKATP--DPIHGLVEAEVNGKTCVVEYEPDTALRDTEQVPLLEEGGIEAFIRREV 649

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            P+ PDA+ID       DK +  VGYEI+F R FY+  P R L +I A++  +E +   L
Sbjct: 650 LPYTPDAWID------PDKTL--VGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGL 701

Query: 668 LEEMATE 674
           LE++  E
Sbjct: 702 LEQIVGE 708


>gi|126664067|ref|ZP_01735061.1| type I restriction-modification [Flavobacteria bacterium BAL38]
 gi|126624016|gb|EAZ94710.1| type I restriction-modification [Flavobacteria bacterium BAL38]
          Length = 578

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 298/528 (56%), Gaps = 28/528 (5%)

Query: 14  FIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID--LE 70
           FIW+  +D+  D FK  + G V+LPF ++RRL+C L+     VR+ Y  F     +  L+
Sbjct: 12  FIWQITDDVLRDAFKKNEIGDVVLPFVVIRRLDCILDGVNENVRDTYNNFKDKVAEDKLD 71

Query: 71  SFVKVA--GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             ++ A  G  FYNTS ++L +L   + N   N  +Y+  F+   + I E+F F   +AR
Sbjct: 72  PILRKAAGGLKFYNTSRHTLHSLKDDARNIEINFNNYLNGFNQEVRDILENFQFDKIVAR 131

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L K  LLY++      I++H + + +  M  ++E LIR    + +E A +  TPRDV+ L
Sbjct: 132 LIKNKLLYEMIDAICKIDMHTEKIDNHGMGYVFEELIRISNEQSNETAGEHFTPRDVIAL 191

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-SHHKIPPILVPHGQ 245
              +L   +     + PG+IRT++DP CGTGG +    N++ D      K  P +  +GQ
Sbjct: 192 MNTILFVNEKQELAQ-PGIIRTIFDPACGTGGMVNLGKNYILDTLLKDSKNKPTIQTYGQ 250

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +++A+  +  LI   E++       NI+ G++ S+D F GK FHY ++NPP+G  W
Sbjct: 251 ELNEQSYAIAKSEALITGEEAN-------NIKHGNSFSEDQFQGKHFHYMMANPPYGVTW 303

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +KD+  +E E  N   GRF  GLP+ SDG +LFL H+ +K+E     G R  +V + SPL
Sbjct: 304 KKDQKFIENESLN-PAGRFYAGLPRTSDGQLLFLQHMLSKIERE---GSRIGVVTNGSPL 359

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSGES+IR+W++END +E IVALP D+F+ T I TY+W L+N+K ++R+GKVQLI
Sbjct: 360 FTGDAGSGESDIRKWIIENDWLECIVALPKDMFYNTGINTYIWFLTNKKEKQRKGKVQLI 419

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           NA D   S +   G KR  I  +    IL +Y   +  + S++ D   FGY ++ V +P+
Sbjct: 420 NAVDYCRSNKKSLGNKRNEITAEHITDILKLYTDFKPTQHSKIFDNEHFGYFQLTVEQPV 479

Query: 485 ---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              +   +LDK    + ++    ++  PL      DI K    Q+ P+
Sbjct: 480 YDEKGKKVLDKNKNPKADSKKRDKENVPLTA----DIEKYFETQVLPH 523



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D +   V D N     D+   + ENVP    I+ YF  +V PHVPDA+ID       DK 
Sbjct: 481 DEKGKKVLDKNKNPKADSKKRDKENVPLTADIEKYFETQVLPHVPDAWIDF------DKT 534

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             R+GYEINF ++FY+Y+  R   ++  E+  +E +I + L E+ +
Sbjct: 535 --RIGYEINFTKYFYEYKGLRPATEVKTEIVSLETEITSFLNELLS 578


>gi|167771154|ref|ZP_02443207.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM
           17241]
 gi|167666824|gb|EDS10954.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM
           17241]
          Length = 671

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 241/697 (34%), Positives = 368/697 (52%), Gaps = 76/697 (10%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFGGS 65
            + NFIW  A+D   D +    +  VILP T++RRL+  L+ T+  V   + K  A G +
Sbjct: 10  QIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLQDTKQQVMDMKAKLDAAGIT 69

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDFDFS 121
           N   ++    AG +F NTS + L  L +   +  L++    Y+  FS N + I + F F 
Sbjct: 70  N-QTDALCVAAGQAFCNTSPFRLRDLTARAKQQQLKADFIAYLDGFSPNVQEILQKFQFR 128

Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTV--------------PDRVMSNIYEHLIRR 165
           + I  + +A +L  + + F    I L P+ V               +  M  I+E LIR+
Sbjct: 129 NQIDTMIEADILGAVIEKFVSKEINLSPNPVYTDDSKTEIKLPGLDNHAMGTIFEELIRK 188

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F    +E A +  TPRDVV L   L+  P     K++     + YD  CGTGG LT A +
Sbjct: 189 FNEANNEEAGEHYTPRDVVELMADLIFVPIKDQIKDA---TYSCYDGACGTGGMLTVAQD 245

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +          +   GQE++PET+A+C A ML   L+ D ++  +++I  GSTLS D
Sbjct: 246 RLLELAEETGKQVSIHLFGQEVQPETYAICKADML---LKGDGKQ--AEHISYGSTLSMD 300

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD-------KDAVEKE-HKNGELGRFGPGLPKISDGSML 337
               ++F + LSNPP+GK W+ D       KD ++   +   E G     +P++SDG +L
Sbjct: 301 GNAARQFDFMLSNPPYGKTWKVDAEKMGGKKDILDSRFNAYLEDGTQLAMIPRVSDGQLL 360

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++ A K++     G R A V + S LF G AGSGES  RR+L+E+DL+EA++ALP  +
Sbjct: 361 FLLNNAAKMKTDTPLGSRIAEVHNGSSLFTGDAGSGESNARRYLIESDLVEAVIALPEKM 420

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T I TY+W+LSN+K E R+GK+QLI+AT + +++R N G+K   +  + R +I+ I+
Sbjct: 421 FYNTGIGTYIWVLSNKKEERRKGKIQLIDATTMKSTLRKNMGEKNCELTPELRDEIMRIF 480

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +  E    SR+ D R F Y  I V RPLR+    D+T    + AD T++K   L Q    
Sbjct: 481 MEMEESSVSRVFDNREFAYWSITVERPLRLRVYPDRT----IPAD-TFKKAEELEQ---- 531

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
                 +Q+      A +   +     EA  LK  A K  I  FI     KDP A P   
Sbjct: 532 ------VQKAIRSVPAGTPTDDWTVFAEATKLKAAALKK-IRPFIT---EKDPMAQP--- 578

Query: 577 VNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
           ++GE  PDT+L + E +P  Y   I  +   EV P+ PDA+     +DEK  +I   GYE
Sbjct: 579 IDGE--PDTDLRDTEIIPFTYEGGIDAFMKNEVLPYAPDAW-----VDEKKTQI---GYE 628

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ++F ++FYQ    R +++I A+LK +E++   +L E+
Sbjct: 629 LSFTKYFYQPVQLRSMEEIVADLKKLESETDGILAEI 665


>gi|300112914|ref|YP_003759489.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299538851|gb|ADJ27168.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 722

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 248/732 (33%), Positives = 365/732 (49%), Gaps = 87/732 (11%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSN 66
           S+ NFIW  A+D+  D +    +  VILP T++RRL+  LEPT+  V   +  L   G  
Sbjct: 8   SIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPTKEKVLVMKAQLDEAGIA 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               +  + AG +FYN S ++L  L S       R + E+Y+  FS N + I + F F +
Sbjct: 68  NQHAALCQAAGEAFYNVSPFTLRDLKSRAKLQQLRADFEAYLDGFSPNVQEILDKFKFRN 127

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIYEHLIRRFGS 168
            I  L +A +L  +   F  + I L P  V D              M  I+E LIRRF  
Sbjct: 128 QIPTLIEADILGHLIDKFLDTRINLSPRPVQDMDGNERLPALDNHAMGTIFEELIRRFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   L+  P   +  E       +YD  CGTGG LT A   +A
Sbjct: 188 ENNEEAGEHFTPRDVVRLMADLIFLP---IADEIESGTYLVYDGACGTGGMLTVAEERLA 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLF 287
           +  + H     +   GQE++PET+A+  A +L++          ++NI+ GSTLS  D F
Sbjct: 245 ELAASHGKEVSIHLFGQEVQPETYAIAKADLLLKGEGGG-----AENIKYGSTLSSSDPF 299

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF------GPGLPKI---SDGSMLF 338
             + F + LSNPP+GK W+ D D +  +    +L RF       P    I   SDG ++F
Sbjct: 300 LSQEFDFMLSNPPYGKSWKSDVDRLGGKDDIKDL-RFVTHHGGDPAYKMITRSSDGQLMF 358

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L++   K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++F
Sbjct: 359 LVNNLAKMKPTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENMF 418

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T IATY+W+L+NRK E+RRGKVQLI+A++ +  + RN GKK R + ++  R I D+ V
Sbjct: 419 YNTGIATYIWVLTNRKREKRRGKVQLIDASEWFVPLRRNLGKKNRELTEEHIRAICDLVV 478

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           +    + S++     FGY ++ V RPLR++  L    L R E      K  PL     L 
Sbjct: 479 TPVETEQSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERTCAKSKEEPLAN---LA 535

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP-------- 569
                +    P+    +F+       +A  +K+ A +  ++       R+D         
Sbjct: 536 RRVAGVLGAGPHLDFNAFMDACGADAKAHGIKLTAKRKKLLQSELCDTREDAAPVLKKVH 595

Query: 570 RADPVT--DVNG-----------------------EWIPDTNLTEYENVPYLE--SIQDY 602
           R D  T   ++G                       E+ PDT L + E VP LE   I+ +
Sbjct: 596 RPDKATPDPIHGLFKIELPSPRGRGAGGEGKIHVVEFEPDTALRDSEQVPLLEEGGIEAF 655

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F REV P+ PDA+ID   I        ++GYEI+F   FY+  P R L+ I A++  +E 
Sbjct: 656 FRREVLPYTPDAWIDPAKI--------QIGYEISFTHHFYKPAPMRTLEAIKADIYALEQ 707

Query: 663 QIATLLEEMATE 674
           +   LLE++  E
Sbjct: 708 ETEGLLEQIVGE 719


>gi|228930125|ref|ZP_04093135.1| Type I restriction enzyme, M protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829624|gb|EEM75251.1| Type I restriction enzyme, M protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 594

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 276/489 (56%), Gaps = 31/489 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A+ L G +K  ++GKVILP T+++RL   L PTR AV +        N  + +
Sbjct: 18  ANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLMPTREAVLKASEQCKDMNDTMRN 77

Query: 72  --FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               K AGYSFYNTS Y+  TL +   N   N  +Y+  FSDN + I  +F F   I  +
Sbjct: 78  RMLEKAAGYSFYNTSLYTFETLLADPANIETNFRAYLNGFSDNMQDILANFKFDIEITNM 137

Query: 128 EKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +   L+ + + F+  E  L PD V    M  ++E L+R+F    +E A    T RDV++
Sbjct: 138 AENDALFYVIQEFNKKESYLGPDKVTSTDMGYVFEELVRKFSESYNEEAGAHFTSRDVIY 197

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T LLL  D         +++T+YD T GT   L+  +  + D     ++       GQ
Sbjct: 198 LMTDLLLAEDRETLT-GQNVVKTVYDQTMGTSQMLSAMIERIHDFNKGAEVATF----GQ 252

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PET+A+  A  +IR    D       N+  GSTLS D F G  F YC+SNPPFG  W
Sbjct: 253 ELNPETYAIAKADTMIRGGNPD-------NMALGSTLSNDQFEGYTFDYCISNPPFGIDW 305

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +KDK +VE+EH+ GE GRFG GLP I DG +LF ++  +KL+      GR AIV + S L
Sbjct: 306 KKDKKSVEEEHQKGENGRFGVGLPTIKDGQLLFQLNGLSKLKET----GRMAIVHNGSAL 361

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F+G+AG GES IR++++ ND +EAIV LPTDLF+ T I+TY+WIL+  K+  R+GKVQLI
Sbjct: 362 FSGKAGGGESAIRQYVIGNDWLEAIVQLPTDLFYNTGISTYVWILTKNKSAARQGKVQLI 421

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFGYR 476
           +A+ ++   R N G KR  IN++ R  I+  Y    N ++        S++ D   FGY 
Sbjct: 422 DASKMFEKRRKNIGNKRVDINEECRNMIVQAYGEFANKEYYVDDTVVESKVFDNLDFGYV 481

Query: 477 RIKVLRPLR 485
           ++ V  P R
Sbjct: 482 KVTVESPQR 490



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DT+L + E++P  E +Q YF REV    PDA++D+    +KDK    +GYEI F R F
Sbjct: 504 VADTSLRDTEDIPLKEDVQTYFEREVLTFNPDAWMDR----KKDK----IGYEIPFTRLF 555

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           Y+Y        I   +K +E  I    E ++
Sbjct: 556 YKYTAPEPSDLIAERIKKLEESILANFEVLS 586


>gi|289523864|ref|ZP_06440718.1| type I restriction-modification system, M subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502520|gb|EFD23684.1| type I restriction-modification system, M subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 701

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 238/716 (33%), Positives = 365/716 (50%), Gaps = 110/716 (15%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + NFIW  A+D+  D +    +  VILP T++RRL+  LEPT+ AV +   +   + I  
Sbjct: 35  ITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKRAVLDLKASLDKAGIVH 94

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDFDFSST 123
           +  +  + AG +FYNTS ++L  L +  +R  LE+    Y+  FS N + I ++F+F + 
Sbjct: 95  QDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIIDNFEFRNQ 154

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIYEHLIRRFGSE 169
           I RL KA  L  + + F    I L P  V D              M  I+E L+RRF  E
Sbjct: 155 IPRLTKADALGTLIEKFLDPSINLSPYPVLDSAGSVRLPGLDNHAMGTIFEELVRRFNEE 214

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRD V L   L+ +P   +  +       LYD  CGTGG LT A   +  
Sbjct: 215 NNEEAGEHWTPRDAVRLMARLIFEP---IADQIESGTYLLYDGACGTGGMLTVAEETLLQ 271

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
                     +   GQE+  ET+A+C + +L++        + + NI  G   STLS D 
Sbjct: 272 LAKERGKQVSMHLFGQEINAETYAICKSDLLLKG-----EGEAADNIVGGPEHSTLSNDA 326

Query: 287 FTGKRFHYCLSNPPFGKKWEKD------KDAVEK-----EHKNGELGRFGPGLPKISDGS 335
           F G+ F + LSNPP+GK W+ D      K  ++      +H+  EL      + + SDG 
Sbjct: 327 FPGREFDFMLSNPPYGKSWKSDLERMGGKSGIKDPRFVVQHRGEELSL----ITRSSDGQ 382

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAIVALP 
Sbjct: 383 MLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIVALPL 442

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILD 454
           ++F+ T IATY+W+L+NRK E R+G+VQLI+AT  +  +R N GKK   ++++  R++LD
Sbjct: 443 NMFYNTGIATYVWVLTNRKPEHRKGRVQLIDATQWYKPLRKNLGKKNCELSEEDIRRVLD 502

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            ++  E  + S++     FGY ++ V RPLR+  I         E   T +++  L ++ 
Sbjct: 503 TFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKGI-------DPERTYTPKEIKALRETA 555

Query: 515 -WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
              +   P++++I+  G A   ++   +        V A K  +V               
Sbjct: 556 ERAEDAPPVIKKIHKPGTAPDPLRGLFEM-------VIAGKPRVV--------------- 593

Query: 574 VTDVNGEWIPDTNLTEYENVPYLE------------------SIQDYFVREVSPHVPDAY 615
                 E+ PD  L + E +P+LE                  +I+ +  REV P+VPDA+
Sbjct: 594 ------EYEPDKELRDSEQIPFLECQACHQPGYLPSPEDQRTAIEAFLRREVLPYVPDAW 647

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            D   +        +VGYEINFNR+FY+ +  R L++I A+L  VE +   LL E+
Sbjct: 648 YDPASV--------KVGYEINFNRYFYKPKALRPLEEIRADLLTVEREAEGLLAEI 695


>gi|78356904|ref|YP_388353.1| type I restriction-modification system specificity subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219309|gb|ABB38658.1| type I restriction-modification system specificity subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 710

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 240/731 (32%), Positives = 377/731 (51%), Gaps = 96/731 (13%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSN 66
           S+ NFIW  A+D+  D +    +  VILP T++RRL+  LEP++  V   +K L   G  
Sbjct: 8   SIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAGIA 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSS 122
               +  + AG +FYN S ++L  L +   +  L    E+Y+  FS N + I + F F +
Sbjct: 68  NQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKFRN 127

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIYEHLIRRFGS 168
            I  L +A +L  + + F    + L P  V D              M  I+E LIRRF  
Sbjct: 128 QIPTLIEADILGHLIEKFLDGRVNLSPKPVRDVDGNELLPALDNHSMGTIFEELIRRFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           E +E A +  TPRDVV L   L+  P  DD    ES   +  +YD  CGTGG LT A   
Sbjct: 188 ENNEEAGEHFTPRDVVKLMADLIFLPVADDI---ESGTYL--VYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+    H     +   GQE++PET+A+  A +L++   ++     ++N++ GSTLS D 
Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAE-----AENMKYGSTLSSDA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVE-----------KEHKNGELGRFGPGLPKISDGS 335
           F  + F + LSNPP+GK W+ D + +             +H N    +    + + SDG 
Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDIKDPRFVTQHANDSEYKM---ITRSSDGQ 354

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           ++FL++  +K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP 
Sbjct: 355 LMFLVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPE 414

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILD 454
           ++F+ T IATY+W+L+NRK++ R+GKVQLI+A++ +  + RN GKK   ++++Q + I+D
Sbjct: 415 NMFYNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVD 474

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---- 510
           + V+    + S++     FGY ++ V RPLR++  L    L R +      K  PL    
Sbjct: 475 LVVNPRETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLA 534

Query: 511 -----------HQSF--WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                      H  F  ++D+      +   +G   +  ++ +   E    +  A+   +
Sbjct: 535 RRVAEALGAGPHIDFNAFMDVAHADADK---HGVKLTAKRKKLLQGELCDTREDAAP--V 589

Query: 558 VAFINAFGRKDPRADPV-----TDVNG-----EWIPDTNLTEYENVPYLE--SIQDYFVR 605
           +  ++  G+  P  DP+      ++ G     E+ PDT L + E VP LE   I+ +F R
Sbjct: 590 LKKVHKPGKATP--DPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGGIEAFFRR 647

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGR--VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
           EV P+  DA+ID           G+  VGYEI+F R FY+  P R L +I A++  +E +
Sbjct: 648 EVLPYTSDAWIDP----------GKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQE 697

Query: 664 IATLLEEMATE 674
              LLE++  E
Sbjct: 698 TEGLLEQIVGE 708


>gi|307826308|ref|ZP_07656515.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
 gi|307732664|gb|EFO03534.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
          Length = 789

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 242/793 (30%), Positives = 388/793 (48%), Gaps = 152/793 (19%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF-----GG 64
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP+++ V E+ LAF     G 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKAKVLEE-LAFQRNDMGL 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDF 118
           + +D       +GY FYNTS+++L+ L  T T N      N+E Y+  +S N K I + F
Sbjct: 68  TELDDNGLKDASGYVFYNTSKWTLNQLFKTATNNQQILLANVEEYLNGYSANVKEIIDKF 127

Query: 119 DFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPD----RV-------MSNIYEHLIRR 165
           +  + +  +    +L  + + F+   I L P  V D    R+       M  ++E LIR+
Sbjct: 128 NLKAQVRHMAGKDVLLDVLEKFTSPNINLTPHEVEDPDGNRLPALTNLGMGYVFEELIRK 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  + +E A +  TPR+V+ L T L+ DP     K+    + T+YDP CG+GG LT++ N
Sbjct: 188 FNEDNNEEAGEHFTPREVIELMTHLIFDP----VKDKIPPVMTIYDPACGSGGMLTESQN 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + D     +    +  +G+E+  ET+A+C + M+I+   ++P      NI+ GSTLS D
Sbjct: 244 FIKDEEGAIRATGDVYLYGKEINDETYAICKSDMMIKG--NNP-----SNIRVGSTLSTD 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKISD 333
            F G RF + LSNPP+GK W  ++       D ++   +      +G        P+ SD
Sbjct: 297 EFAGTRFDFMLSNPPYGKSWASEQKYIKDGADVIDPRFRVTLKDYWGNPETVDATPRSSD 356

Query: 334 GSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           G +LFLM + +K++   N   G R A V + S LF G AG GES IRR ++ENDL+EAI+
Sbjct: 357 GQLLFLMEMVSKMKSLDNSPYGSRIASVHNGSSLFTGDAGGGESNIRRHIIENDLLEAII 416

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
            LP +LF+ T I TY+W+LSN K + R+GKVQLI+A+ L+  +R N G K      +  R
Sbjct: 417 QLPNNLFYNTGITTYIWLLSNNKAQPRKGKVQLIDASQLYRKLRKNLGNKNCEFAYEHIR 476

Query: 451 QILDIYV--------SRENGKFSRMLDYRTFGYRRIKVLRPLR----------------- 485
           +I+  Y+        + + G  +++ D   FGY ++ + RP R                 
Sbjct: 477 EIVTAYLQLATKERQADDAGIAAQVFDNSDFGYYKVNIERPDRRKAQFSNERIETLRFDK 536

Query: 486 -----MSFILDKTGLA---------RLEADITW--------------RKLSPLHQSFWLD 517
                M +I  + G A         R +A + W              + LSP      LD
Sbjct: 537 SLREPMQWIYSQWGEAVYQPGTLDEREKAILVWCDENELNLNTKNRQKLLSPNTWKKQLD 596

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLK---VKASKSFIVAFINAFGRKDPRADPV 574
           +++     +   G AES      K    + LK   +K S     A +NA    D  A+ V
Sbjct: 597 LVQAAKALMAAIGEAESSDFNQFKGQVDEALKAQGIKLSAGDKKAILNAVSWYDETAEKV 656

Query: 575 ---------------------------------TDVNGEWIP---DTNLTEYENVPYLES 598
                                            TD  GE++    +T+L + E++P    
Sbjct: 657 IAQKLKLGGDKLDQLLHHLDCTEQDLPDYGYYSTDKKGEYLSYETNTDLRDSESIPLKGD 716

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I+ YF+ EV PHV +A+I+   +D       ++GYEI+FN++FY+++P R ++++ +++ 
Sbjct: 717 IRSYFLAEVKPHVAEAWIN---LDST-----KIGYEISFNKYFYRHKPLRSMKEVASDII 768

Query: 659 GVEAQIATLLEEM 671
            +E +   L+ ++
Sbjct: 769 ALERRAEGLIADI 781


>gi|313634903|gb|EFS01308.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 421

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 182/428 (42%), Positives = 260/428 (60%), Gaps = 24/428 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LAFGGSNIDL 69
            +FIW  AE L G++K  ++G+VILP  ++RR +C LE T+  V E+Y  L      +  
Sbjct: 7   VSFIWSIAEVLRGEYKPENYGEVILPLVVIRRFDCVLEKTKPEVLEQYKILQNKPEGVQT 66

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               K +   FYN S Y  + L S   N  +N + Y+  FS NA  I + F+F S I +L
Sbjct: 67  ALLTKTSKEDFYNISNYGFNNLLSDPDNIADNFKDYLNGFSKNANEIIQYFNFDSEIDKL 126

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++  LLY++ K FS I+LHP+TV +  M  I+E LIRRF      G  D  TPR+V+ L 
Sbjct: 127 DRNDLLYEVLKRFSEIDLHPNTVSNIEMGYIFEELIRRFSENAEAG--DHYTPREVIRLM 184

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL + DD +   + G+ +TLYD   GTGG  + A  ++    SH+ +   L+ H QE+
Sbjct: 185 VHLLFN-DDRIDIATEGITKTLYDCAAGTGGMGSVANEYMK---SHNNLGE-LIFHAQEV 239

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             E++A+  + +L+++ +++       NI+ G+TL+ D F    F + +SNPP+G  W+K
Sbjct: 240 NEESYAIAKSDLLLKKEDAN-------NIRLGNTLTNDKFKTDTFDFMISNPPYGVDWKK 292

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSS 362
            + AV+ EH + G  GRFG GLP+ SDG +LFL HL +K+    E  P G  R AI+++ 
Sbjct: 293 VEKAVKDEHNDLGFNGRFGAGLPRTSDGQLLFLQHLVSKMKPVTEENPYGS-RIAIIMNG 351

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR+L ENDL+E +VALP DLF+ T I+TY+WIL+N K   RRGKV
Sbjct: 352 SPLFTGDAGSGESEIRRYLFENDLVEGLVALPNDLFYNTGISTYIWILTNNKETHRRGKV 411

Query: 423 QLINATDL 430
            L+NA D 
Sbjct: 412 TLVNAVDF 419


>gi|49484939|ref|YP_042160.1| putative type I restriction enzyme methylase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49243382|emb|CAG41799.1| putative type I restriction enzyme methylase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 595

 Score =  323 bits (829), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 314/581 (54%), Gaps = 60/581 (10%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLE 70
           AN IW  A+ L G +K  ++GKVILP T+++RL   L  TR  V +        N +  E
Sbjct: 18  ANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLLKTRDKVLKTAENTQSINDVMRE 77

Query: 71  SFVKVA-GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             +K A GYSFYNTS Y+  TL +   N  +N  +Y+  FS+N + I  +F F   I  +
Sbjct: 78  RLLKNASGYSFYNTSLYTFETLLADPANIESNFRAYLNGFSENMQDILNNFKFDVEITTM 137

Query: 128 EKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               +L+ + + F+  +  L PD +    M  ++E L+R+F    +E A    T RD+++
Sbjct: 138 ADNDVLFYVIQEFNKADAYLGPDKMTSTDMGYVFEELVRKFSESYNEEAGAHFTSRDIIY 197

Query: 186 LATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           L T LLL  D D LFKE   + +T+YD T GT   L+     + D     ++       G
Sbjct: 198 LMTDLLLIEDKDTLFKEH--VFKTVYDQTMGTSQMLSAMTERIHDMNDTAEVATF----G 251

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL PET+A+  A  +IR    DP     +N+  GSTL+ D F G  F YC+SNPPFG  
Sbjct: 252 QELNPETYAISKADTMIRG--GDP-----ENMALGSTLTSDRFEGFTFDYCISNPPFGVD 304

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W+KD+ AV+ EH+ GELGRFG GLP++SDG +LF ++  +KL+      GR AI+ + S 
Sbjct: 305 WKKDQKAVKAEHELGELGRFGVGLPRVSDGQLLFQLNGISKLKET----GRMAIIHNGSA 360

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF+G  G+GES IR++++END +E I+ LP DLF+ T I+TY+WI++  K+ ER+GKVQL
Sbjct: 361 LFSGNPGAGESLIRQYVIENDWLEGIIQLPNDLFYNTGISTYIWIITKDKSPERQGKVQL 420

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFGY 475
           ++A++++   R N G+KR  I++  R  I+  Y    + ++        S++L   +FG+
Sbjct: 421 VDASNMYEKRRKNIGEKRVDISEACREMIVQAYGEFNDKEYYLGDGTVESKILKNESFGF 480

Query: 476 RRIKVLRPLR---MSFILDKTGLARLEADIT---------------WRKLSPLHQSFWLD 517
            R+ + RP R      +  K G   ++ ++                 R++ P +Q  W+D
Sbjct: 481 TRVTIERPQRDENGDIVYKKNGSKSVDTNLRDTEDIPLTEDINEYFEREILPFNQDAWMD 540

Query: 518 ILK-------PMMQQIYPYGWAE--SFVKESIKSNEAKTLK 549
             K       P  +  Y Y   E    + E IK  E   +K
Sbjct: 541 RKKDKIGYEIPFTRLFYKYTPPEPSEVISERIKQLEESIIK 581



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 8/99 (8%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           ++D   D V   NG    DTNL + E++P  E I +YF RE+ P   DA++D+    +KD
Sbjct: 489 QRDENGDIVYKKNGSKSVDTNLRDTEDIPLTEDINEYFEREILPFNQDAWMDR----KKD 544

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           K    +GYEI F R FY+Y P    + I   +K +E  I
Sbjct: 545 K----IGYEIPFTRLFYKYTPPEPSEVISERIKQLEESI 579


>gi|313895998|ref|ZP_07829552.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975423|gb|EFR40884.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 662

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 232/692 (33%), Positives = 345/692 (49%), Gaps = 90/692 (13%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++ +FIW  A++   D ++   +  VILP T++RRL+  LE T+ AV      F  +++D
Sbjct: 8   AIVSFIWGIADECLRDIYQSGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFEDAHVD 67

Query: 69  L--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDFDFSS 122
           +  E+    AG +FYN S + L  L S     +L++    Y+  FS N + I + F F +
Sbjct: 68  VPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQSLKADFVAYLNGFSPNVREILDKFKFDT 127

Query: 123 TIARLEKAGLLYKICKNFSGIE-----------------LHPDTVPDRVMSNIYEHLIRR 165
            I  +EKAG+L  + + F+  +                 LHP  + +  M  I+E LIR+
Sbjct: 128 QIDTMEKAGILGAVIEKFTASDINLSPYPIYKDAEKKEVLHPG-LDNHSMGTIFEELIRK 186

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F    ++ A +  TPRDVV L   L+  P   +  E      + YD   GTGG LT A  
Sbjct: 187 FNEANNQQAGEHWTPRDVVELMADLIFVP---IRHELLDATYSCYDGASGTGGMLTVAQA 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +    H     +  +GQE+ PET+A+C A ML++   ++     + NI+ GSTLS+D
Sbjct: 244 RLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKGDGAE-----AANIEYGSTLSED 298

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD------KDAVEKEHKNGEL--GRFGPGLPKISDGSML 337
                 F + LSNPP+GK W+ D      K  +E       L  G      P++SDG +L
Sbjct: 299 HHAKMHFDFMLSNPPYGKNWKADATKMGGKSDIEDPRFRVTLADGERLDAFPRVSDGQLL 358

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++   K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+ALP ++
Sbjct: 359 FLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIALPENM 418

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T I TY+WILSN+K + R+GK+QLI+AT +   +R N GKK      + R +IL ++
Sbjct: 419 FYNTGIGTYIWILSNKKEKRRKGKIQLIDATAIKAPLRKNLGKKNCEFTPELRAEILRVF 478

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK---TGLARL--EADITWRKLSPLH 511
           ++ E    S++   + FGY  + V RPLR+    +K    GL R   E     R L    
Sbjct: 479 LAYEESDVSKIFAGKEFGYWSVTVERPLRLRITREKELPAGLLRSAEERAAYQRALDTTP 538

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
              W                  +F     K+   K   +K  +  I         KDP A
Sbjct: 539 LDDWT-----------------AFA----KATGLKPALLKKLRPHITV-------KDPAA 570

Query: 572 DPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
            PV         D+ L + ENVP  Y   I  +   EV P+ PDAY     IDEK  EI 
Sbjct: 571 QPVAGA-----ADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAY-----IDEKKTEI- 619

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
             GYEI+F ++FY+    RK+ +I  +++ VE
Sbjct: 620 --GYEISFTKYFYRPLELRKIDEIVHDIRVVE 649


>gi|86153233|ref|ZP_01071437.1| putative type I restriction enzyme MjaXP M protein [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842959|gb|EAQ60170.1| putative type I restriction enzyme MjaXP M protein [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 636

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 228/689 (33%), Positives = 361/689 (52%), Gaps = 91/689 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + NFIW  A+DL  D +    +  VILP T++RR++  LEPT+  V + Y  +     +L
Sbjct: 9   IVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENL 68

Query: 70  ESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +
Sbjct: 69  ESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQL 128

Query: 125 ARLEKAGLLYKICKNFS------GIELHPD---TVPDRVMSN-----IYEHLIRRFGSEV 170
             LE++ +L+ + + F       GIE   D    V  + +SN     ++E LIR+F  E 
Sbjct: 129 DTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEEN 188

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPR+++ L T L+  P     K+   +I   YD  CG+GG LT++   + D 
Sbjct: 189 NEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWLI---YDNACGSGGMLTESKEFITDP 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS D     
Sbjct: 246 EGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSNDQ-QNL 297

Query: 291 RFHYCLSNPPFGKKWEKDKD--AVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLANKL 346
           +F + LSNPP+GK WE D+    VEK+  N      RF  G+   SDG M+FL+++ +K+
Sbjct: 298 QFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFLLNMLSKM 357

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     G R A V + S LFN  + SG   IR+ ++END +EAIVALPT++F+ T I T+
Sbjct: 358 KFDTPLGSRIASVHNGSSLFN--SDSGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTF 415

Query: 407 LWILSNRKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK 463
           +WI++N+K E ++GKVQLINAT  + ++ ++   G K+  +  +   +I  +++   + K
Sbjct: 416 IWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASSK 475

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPM 522
             ++LD   FGY +I + +P  +  + D    A+L + D    KL  L Q+         
Sbjct: 476 DCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLEQLEQN--------- 526

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
              +  +   E F+K          L VK  KS                + + D +    
Sbjct: 527 ---LQDFKNREEFIK---------FLGVKLKKS--------------EENLIIDSD---- 556

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
             TN TE   +P   +IQ+Y+  EV P+V +++I          E   VGYEI FN++FY
Sbjct: 557 -KTNNTE--KIPLKTNIQNYYDTEVKPYVANSWIAW--------ESASVGYEILFNKYFY 605

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            Y P RKL++I++EL+ +E ++  LL+E+
Sbjct: 606 IYTPPRKLEEINSELEKLEKEVQDLLKEI 634


>gi|121612129|ref|YP_001000444.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005387|ref|ZP_02271145.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249524|gb|EAQ72484.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|107770373|gb|ABF83710.1| putative type I restriction-modification system HsdM subunit
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 636

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 228/689 (33%), Positives = 361/689 (52%), Gaps = 91/689 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + NFIW  A+DL  D +    +  VILP T++RR++  LEPT+  V + Y  +     +L
Sbjct: 9   IVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENL 68

Query: 70  ESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +
Sbjct: 69  ESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQL 128

Query: 125 ARLEKAGLLYKICKNFS------GIELHPD---TVPDRVMSN-----IYEHLIRRFGSEV 170
             LE++ +L+ + + F       GIE   D    V  + +SN     ++E LIR+F  E 
Sbjct: 129 DTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEEN 188

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPR+++ L T L+  P     K+   +I   YD  CG+GG LT++   + D 
Sbjct: 189 NEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWLI---YDNACGSGGMLTESKEFITDP 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS D     
Sbjct: 246 EGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSNDQ-QNL 297

Query: 291 RFHYCLSNPPFGKKWEKDKD--AVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLANKL 346
           +F + LSNPP+GK WE D+    VEK+  N      RF  G+   SDG M+FL+++ +K+
Sbjct: 298 QFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFLLNMLSKM 357

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     G R A V + S LFN  + SG   IR+ ++END +EAIVALPT++F+ T I T+
Sbjct: 358 KFDTPLGSRIASVHNGSSLFN--SDSGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTF 415

Query: 407 LWILSNRKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK 463
           +WI++N+K E ++GKVQLINAT  + ++ ++   G K+  +  +   +I  +++   + K
Sbjct: 416 IWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASNK 475

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPM 522
             ++LD   FGY +I + +P  +  + D    A+L + D    KL  L Q+         
Sbjct: 476 DCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLEQLEQN--------- 526

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
              +  +   E F+K          L VK  KS                + + D +    
Sbjct: 527 ---LQDFKNREEFIK---------FLGVKLKKS--------------EENLIIDSD---- 556

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
             TN TE   +P   +IQ+Y+  EV P+V +++I          E   VGYEI FN++FY
Sbjct: 557 -KTNNTE--KIPLKTNIQNYYDTEVKPYVANSWIAW--------ESASVGYEILFNKYFY 605

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            Y P RKL++I++EL+ +E ++  LL+E+
Sbjct: 606 IYTPPRKLEEINSELEKLEKEVQDLLKEI 634


>gi|320529369|ref|ZP_08030457.1| N-6 DNA Methylase [Selenomonas artemidis F0399]
 gi|320138335|gb|EFW30229.1| N-6 DNA Methylase [Selenomonas artemidis F0399]
          Length = 662

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 234/699 (33%), Positives = 352/699 (50%), Gaps = 90/699 (12%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++ +FIW  A++   D ++   +  VILP T++RRL+  LE T+ AV      F  +++D
Sbjct: 8   AIVSFIWGIADECLRDIYQRGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFEDAHVD 67

Query: 69  L--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDFDFSS 122
           +  E+    AG +FYN S + L  L S     NL++    Y+  FS N + I + F F +
Sbjct: 68  VPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQNLKADFIAYLNGFSPNVQEILDKFKFRT 127

Query: 123 TIARLEKAGLLYKICKNFSGIE-----------------LHPDTVPDRVMSNIYEHLIRR 165
            I  ++ AG+L  + + F+  +                 LHP  + +  M  I+E LIR+
Sbjct: 128 QIDTMDDAGILGAVIEKFTASDINLSPYPIYKDAEKKDVLHP-GLDNHSMGTIFEELIRK 186

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  + +E A +  TPRDVV L   L+  P   +  E      + YD   GTGG LT A  
Sbjct: 187 FNEDNNEEAGEHWTPRDVVELMADLIFVP---IRHELLDATYSCYDGASGTGGILTVAQA 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +    H     +  +GQE+ PET+A+C A ML++   ++     + NI+ GSTLS+D
Sbjct: 244 RLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKGDGAE-----AGNIKYGSTLSED 298

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD--KDAVEKEHKNGEL------GRFGPGLPKISDGSML 337
                 F + LSNPP+GK W+ D  K   + + K+         G      P++SDG +L
Sbjct: 299 HHAKMYFDFMLSNPPYGKNWKADATKMGGKSDIKDPRFRVTLADGERLAAFPRVSDGQLL 358

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++   K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+ALP ++
Sbjct: 359 FLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIALPENM 418

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T I TY+WILSN+K + R+GK+QLI+AT + + +R N GKK      + R +IL I+
Sbjct: 419 FYNTGIGTYIWILSNKKEKRRKGKIQLIDATAMKSPLRKNLGKKNCEFTPELRAEILRIF 478

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-----EADITWRKLSPLH 511
           ++ E    S++ + + FG+  + V RPLR+    ++T  A L     E     R L    
Sbjct: 479 LAYEESDVSKIFEGKEFGFWSVTVERPLRLRIERERTLPAGLFGTAEERAAYQRALDTAP 538

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
              W                  +F     K+   K   +K  +  I         KDP A
Sbjct: 539 LDDWT-----------------AFA----KATGLKPALLKKLRPHITV-------KDPAA 570

Query: 572 DPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
            PV    GE   D+ L + ENVP  Y   I  +   EV P+ PDAY     IDEK  EI 
Sbjct: 571 QPVA---GE--ADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAY-----IDEKKTEI- 619

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
             GYEI+F ++FY+    RK+ +I  +++ VE     LL
Sbjct: 620 --GYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLL 656


>gi|150399017|ref|YP_001322784.1| N-6 DNA methylase [Methanococcus vannielii SB]
 gi|150011720|gb|ABR54172.1| N-6 DNA methylase [Methanococcus vannielii SB]
          Length = 589

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/491 (39%), Positives = 278/491 (56%), Gaps = 37/491 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A+ + G FK  ++GKVILP T+L+RL   L PT+  V E Y  +G   ++   
Sbjct: 16  ANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKEKVLEAYKEYGSLEVNDGF 75

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
           F   +GY FYNTS ++  TL     +   N  +++A FS+N + I ++F F   I+ L  
Sbjct: 76  FRDASGYPFYNTSPFTFETLLNDPDHIEENFRTFMAGFSENIQDILKNFKFEHIISDLVG 135

Query: 128 ---EKAGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              E   L Y I + N     + PD +    M  I+E LIR+F    +E A    T RD+
Sbjct: 136 STAEDDKLFYVIQEFNKPNSYMGPDAISTADMGYIFEELIRKFSESYNEEAGAHFTARDI 195

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           ++L T LL+  +DA    + G I   YD   GT   LT     +    S  ++       
Sbjct: 196 IYLMTDLLVTEEDAAL--TRGKI-DCYDMAMGTSQMLTCLTERILQLDSEVEVNVF---- 248

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  PET A+  A M+IR         ++ N++ G TL+ D F G +F YC+SNPPFG 
Sbjct: 249 GQEFNPETFAIAKADMIIRG-------GIADNMRFGDTLTNDQFKGYKFDYCISNPPFGV 301

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +W+  K+AVEKEHK+G+ GRFG GLPKISDG MLF ++  +KL+      GR AI+ + S
Sbjct: 302 EWKPQKNAVEKEHKSGDNGRFGVGLPKISDGQMLFTLNGISKLK----DTGRMAIIHNGS 357

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S  K++ER+GKVQ
Sbjct: 358 PLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNKSDERKGKVQ 417

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF---------SRMLDYRTF 473
           LI+A++++   R   G KR  +++D R  I+  Y      KF         S++ +   F
Sbjct: 418 LIDASNMYEKRRKSIGNKRVDLSEDCRAAIVQAY-GEFTDKFYDYGDKSVESKVFNNEDF 476

Query: 474 GYRRIKVLRPL 484
           G+ +I +  PL
Sbjct: 477 GFYKITIESPL 487



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+  PDT+  + ENVP  ++I++YF REV P+ PDA++D      + K +  +GYEI F 
Sbjct: 499 GKPAPDTSKRDTENVPLTDNIKNYFEREVLPYNPDAWVD------ESKTV--IGYEIPFT 550

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           R FY+Y    K   I   +  +EA++   L+ +
Sbjct: 551 RHFYKYVAPEKSDAIAERICVIEAELTGSLKSL 583


>gi|225868038|ref|YP_002743986.1| type I restriction enzyme methylase protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701314|emb|CAW98331.1| putative type I restriction enzyme methylase protein [Streptococcus
           equi subsp. zooepidemicus]
          Length = 597

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 211/586 (36%), Positives = 312/586 (53%), Gaps = 71/586 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL-- 69
           A+ IW  A+ L G +K  ++GKVILP T+++RL   L PTR  V E  ++   SNI +  
Sbjct: 23  ASLIWSIADILRGLYKPHEYGKVILPMTVIKRLHDTLLPTRDRVLE--VSKTLSNIKVAQ 80

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                    +GY FYNTS ++ ++L S   N + N  +++  FS+N + I ++F+F   I
Sbjct: 81  IRDRKLTDTSGYKFYNTSNFTFNSLLSDPDNIQENFYAFLNGFSENVRDILDNFEFDEEI 140

Query: 125 ARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +++     L+ + + F+  +  L  DTV    M  I+E L+RRF     E A    T RD
Sbjct: 141 SKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDAGAHFTSRD 200

Query: 183 VVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           +++L T +LL        E P    ++RT+YD T GT   L+  M  +    ++  +   
Sbjct: 201 IIYLMTDILL------IDEKPSDKPIVRTIYDQTMGTSQMLSAMMERIKALDANADV--- 251

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               GQEL PET+A+  A  +IR    D       N+  GSTLSKD F+G  F Y +SNP
Sbjct: 252 -TTFGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSKDAFSGYTFDYLISNP 303

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG  W+KD+ AV++E + GE GRFG GLPKISDG +LF ++  +KL+      GR AI+
Sbjct: 304 PFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLK----DTGRMAII 359

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + S LF+G AG GES IR +++ ND +EAI+ LPTDLF+ T I+TY+WI++  K EERR
Sbjct: 360 HNGSALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNKVEERR 419

Query: 420 GKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL--------DIYVSRENGKFSRMLDY 470
           GKVQL++A+  +   R N G K+  I   QR  I+         IY+  +    S++ D 
Sbjct: 420 GKVQLLDASRAFVKRRKNIGDKKVDIEKAQRELIVQAYGEFANQIYIEGDTAVESKIFDN 479

Query: 471 RTFGYRRIKVLRPL---RMSFILDKTGLA------RLEADI---------TWRKLSPLHQ 512
             FGYR++ V  P+     + + +K G A      R   DI           R++ P + 
Sbjct: 480 NFFGYRKVVVETPMYDEDGNIVRNKNGKATPDTSKRNTEDIPLTEDVDEYITREVLPFNP 539

Query: 513 SFWLDILK-------PMMQQIYPYGWAES--FVKESIKSNEAKTLK 549
             W+D  K       P  +  Y Y   E+   + + IK  E K +K
Sbjct: 540 DAWVDDSKTKIGYEIPFTRLFYKYQAPENSETIAKRIKELEEKIVK 585



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D   + V + NG+  PDT+    E++P  E + +Y  REV P  PDA++D    D K K 
Sbjct: 495 DEDGNIVRNKNGKATPDTSKRNTEDIPLTEDVDEYITREVLPFNPDAWVD----DSKTK- 549

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
              +GYEI F R FY+YQ     + I   +K +E +I    E ++ +
Sbjct: 550 ---IGYEIPFTRLFYKYQAPENSETIAKRIKELEEKIVKNFESLSGQ 593


>gi|303242150|ref|ZP_07328640.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302590337|gb|EFL60095.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 588

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 193/490 (39%), Positives = 279/490 (56%), Gaps = 37/490 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           +N IW NA  L G +K  ++GKVILP T+++R    L PTR  V E Y       +  E 
Sbjct: 18  SNMIWNNANHLVGLYKPHEYGKVILPMTVIKRFHDTLLPTRDKVLETYEKVKNFEVK-EG 76

Query: 72  FVKVA-GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           F++ A GYSFYNTS+++  +L S   +   N  +Y+  FSDN   I  +F+F   I +L 
Sbjct: 77  FLESASGYSFYNTSKFTFDSLLSDAEHIEENFRTYLNGFSDNVHDILANFEFDKEITKLA 136

Query: 129 KAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
              +L+ I + F+     L  D +    M  I+E LI+ F    +E A    T RD+++L
Sbjct: 137 NNNILFFIIQEFNKKTSYLGADLITSVDMGYIFEDLIKTFSETYNEEAGAHFTSRDIIYL 196

Query: 187 ATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFL--TDAMNHVADCGSHHKIPPILVPH 243
            T LL+ D  D++ +   G+++T+YD T GT   L   +   H  D  +  ++       
Sbjct: 197 MTDLLICDEKDSMLEN--GVVKTVYDQTMGTSQMLGCMEERLHALDADAEIRL------F 248

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  PET+A+  A MLIR   +D       N++ G TLS D F+G  F YC+SNPPFG 
Sbjct: 249 GQEFNPETYAIAKADMLIRGGNAD-------NMKFGDTLSDDKFSGYTFDYCISNPPFGI 301

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W+++++AV+ E+K G+ GRFG GLPKISDG MLF+++  +KL+      G+ AI+ + S
Sbjct: 302 DWKREEEAVKAENKLGDKGRFGAGLPKISDGQMLFMLNGVSKLK----STGKMAIIQNGS 357

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF+G AGSGESEIRR+L+END I+AI+ L TD F+ T I TY+WI++  K   R GK+Q
Sbjct: 358 PLFSGDAGSGESEIRRYLIENDWIDAIIQLSTDTFYNTGITTYIWIITKNKPAHREGKIQ 417

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFG 474
           LI+A+ +    R   G KR  I D+ R  I+  Y    N  +        S+++D    G
Sbjct: 418 LIDASKMAEQRRKSIGNKRYDITDECRDLIVTAYGEFLNKVYTLGDKTCESKVIDNVDLG 477

Query: 475 YRRIKVLRPL 484
           Y +I V  PL
Sbjct: 478 YHKITVETPL 487



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 15/136 (11%)

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI-------PDTNLTEYENVPY 595
           N+  TL  K  +S ++  ++    K     P+ D NG  +        DT+  + ENVP 
Sbjct: 456 NKVYTLGDKTCESKVIDNVDLGYHKITVETPLYDENGNIVIKNKKPVVDTSKRDTENVPL 515

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            E I  YF REV+P+  DA+I        DK   +VGYEI F R+FY+Y      +DI  
Sbjct: 516 TEDIDVYFKREVNPYNKDAFI--------DKSKTKVGYEIPFTRYFYKYLAPENSEDIAK 567

Query: 656 ELKGVEAQIATLLEEM 671
            +  +E  I   L+++
Sbjct: 568 RISTLETDITNSLKKL 583


>gi|119513481|ref|ZP_01632505.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414]
 gi|119461861|gb|EAW42874.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414]
          Length = 575

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 218/599 (36%), Positives = 329/599 (54%), Gaps = 68/599 (11%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV---------- 154
           FSDN K I   F+  + I R+ +A +L+ + + F+   I L P  + D            
Sbjct: 4   FSDNVKEIISKFELRNQIRRMVEADVLHDVLEKFTSTDINLSPHEIVDSKGETLPGLSNL 63

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            M  ++E LIR+F  E +E A +  TPR+V+ L   LL  P   +  E P +I T+YD  
Sbjct: 64  GMGYVFEELIRKFNEENNEEAGEHFTPREVIKLMIHLLFIP---IKDEIPPVI-TVYDGA 119

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG LT++   +            +  +G+E+  ET+A+C + M+I+   +DP     
Sbjct: 120 CGSGGMLTESQGFIEAAEGEINSQSKVYLYGKEVNGETYAICKSDMMIKG--NDP----- 172

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-------------AVEKEHKNGE 320
           +NI+ GSTL+ D F   RF + LSNPP+GK ++ D+               VE ++  G+
Sbjct: 173 ENIKFGSTLATDDFGEMRFDFMLSNPPYGKSYKSDQKYILDGKEVLDPRFQVELQNFQGQ 232

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEI 377
           L    P +P+ SDG +LFLM +  K++ P N    G R A + + S LF G AGSGES I
Sbjct: 233 LETL-PAIPRSSDGQLLFLMDMVGKMK-PLNQSPLGSRIASIHNGSALFTGDAGSGESNI 290

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-N 436
           RRW++END +E IV LP ++F+ T IATY+W+LSNRK E+RRGKVQLI+ T+ +  +R N
Sbjct: 291 RRWIIENDWLECIVGLPLNMFYNTGIATYIWVLSNRKPEKRRGKVQLIDGTEWYGKLRKN 350

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            GKK   +  +  +QI + ++  E    S++ D + FGY +I V RPLR+SF +    + 
Sbjct: 351 LGKKNCELTPENIQQITETFLRFEETAESKIFDNQDFGYHKITVERPLRLSFQVTPERVE 410

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMM-QQIYPYGWAESFVKESI-KSNEAKTLKVKASK 554
           +    +   KL P+     L ILK +   ++Y      + VK+ + K+ +A+  K+ A  
Sbjct: 411 QF-GSLADDKLYPV-----LGILKDLFGDEVY---QDFNLVKQKLEKALKAEGFKLAAKD 461

Query: 555 SFIVAFINAFGRKDPRADPV----TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPH 610
             +V   + F  KD  A+ V    T     +  D+ L + ENVP  E IQ+YF REV PH
Sbjct: 462 LKLV--YDTFTEKDETAEAVIKKKTKAGVVYESDSELRDTENVPLKEDIQEYFNREVLPH 519

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           VPDA+I        D E    GYEI+F ++FY++QP R L DI A++  +EA+   +L+
Sbjct: 520 VPDAWI--------DFEKTVRGYEISFTKYFYKFQPLRSLADIAADILALEAETEGVLK 570


>gi|227547714|ref|ZP_03977763.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080212|gb|EEI18175.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 667

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 216/688 (31%), Positives = 367/688 (53%), Gaps = 56/688 (8%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REK 58
           T     L   IW+ A+D L       ++G  I+PFT+LRRLE  LE T+  V     RE 
Sbjct: 16  TAKVNRLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLESTKKDVLDLVHREN 75

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNT--RNNLESYIASFSDNAKAI 114
                 + + L  ES  K+    F+NTSE SL  L +++   +  L+ Y+ +FS N   I
Sbjct: 76  VKGTDPAIVALKIESMFKL---RFWNTSELSLERLATSDDALKPGLKQYLNTFSPNILEI 132

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           ++ F+F   I  L++   L+ +  +F+ I++  + + D+ M +I+E+L+ R  +  ++ A
Sbjct: 133 WDAFEFDKLIDFLDRNNQLWNVVNHFASIDMSDEALQDQTMGDIFENLMYRSFARKAKDA 192

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPRD + L T++L   DD   +E  G+IR++YDPT GT G L  A + +       
Sbjct: 193 GEFYTPRDAIRLMTSILFTSDDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGI 251

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++    V  GQEL+  + A+  + +L++  + DP     + ++ G++L+ D +    F Y
Sbjct: 252 EV----VVAGQELKESSFAMGKSDLLMQGFK-DP-----EVLKFGNSLTNDQYANDTFDY 301

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG-- 352
            ++NPP+G  W+  ++ V+   + G+  RF  GLP +SDG MLFLMH+A+KL  P +G  
Sbjct: 302 IMANPPYGSSWKAFQNEVKALQEGGD-PRFSEGLPAVSDGQMLFLMHIAHKLA-PASGDT 359

Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLL----ENDLIEAIVALPTDLFFRTNIATYL 407
            GGRAA+V + SPLF G A SG   IR++L+      ++++AI+ALP D+F+ T IATY+
Sbjct: 360 KGGRAAVVTNGSPLFTGDAESGPDSIRKYLIGAQGGTEVLDAIIALPNDMFYNTGIATYI 419

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           WIL   K   RRG++Q I+AT++   +R N G+KR    +D  R+I  IY   E  + S 
Sbjct: 420 WILDQNKEPRRRGRIQFIDATEICAPMRKNMGQKRVEFTEDNIREITKIYKDFEETERSI 479

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           ++      YR + + +    +  +    +A+    ++ +   P H+    ++++ M  + 
Sbjct: 480 IVTADDLTYRDVPMFKVAHYAVSVTDETVAQA---LSHKSAFPEHE----EVIREMKGRD 532

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
           Y      + + +++K++ AK   VK     +   + A   +D  A    D  G  + D  
Sbjct: 533 Y------NDLPKALKAS-AKAHGVKTGAPLLKHIMAALAVEDENAPASFDEKGNPVVDAA 585

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
               E VPYLE + ++  REV P VPD         + D+ + +VG E+   R FY+ + 
Sbjct: 586 SKVIERVPYLEDVSEHMEREVLPFVPDM--------QWDESLAKVGTELPLTRLFYKPEE 637

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMATE 674
           SR L+++DA++ G   +I  +  E+ ++
Sbjct: 638 SRSLEELDADIAGSLDRIYAMFGEVRSD 665


>gi|310658569|ref|YP_003936290.1| n-6 DNA methylase [Clostridium sticklandii DSM 519]
 gi|308825347|emb|CBH21385.1| N-6 DNA methylase [Clostridium sticklandii]
          Length = 597

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 188/489 (38%), Positives = 274/489 (56%), Gaps = 33/489 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+ IW  A+ + G FK  ++GKVILP TLL+RL   L  T+  V +KY       +    
Sbjct: 16  ADMIWGIADIIRGTFKPHEYGKVILPMTLLKRLNDTLLETKEGVLKKYEEVKNFEVKDGF 75

Query: 72  FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
             K +GYSFYN S ++   L +   +   N +++IA FS+N   I ++F F +T+  L  
Sbjct: 76  LTKASGYSFYNISPFTFENLLNEPEHIEENFKTFIAGFSENIHDIIKNFKFENTLNDLVG 135

Query: 128 ---EKAGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              E++ L Y I + N     +  D +    M  I+E L+R+F    +E A    T RD+
Sbjct: 136 STKEESKLFYVIQEFNKPNAYMGADIITTTDMGYIFEELVRKFSESYNEEAGAHFTARDI 195

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           ++  T LL+  ++ + +E  G+++T+YD   GT   LT     + +  +  ++       
Sbjct: 196 IYTMTDLLIAEEENVLQED-GLVKTVYDMAMGTSQMLTSMEERLKELDADAEVTVF---- 250

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE+ PET+A+  A M+IR   +        N++ G TLS D F    F Y +SNPPFG 
Sbjct: 251 GQEINPETYAIAKADMIIRGGNA-------SNMRFGDTLSNDRFEDYEFDYIISNPPFGV 303

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W+  K AVEKEHK G  GRF PGLPKISDG MLF ++   KL    N  G+ AI+ + S
Sbjct: 304 DWKAQKSAVEKEHKKGSNGRFAPGLPKISDGQMLFTLNGIKKL----NDTGKMAIIHNGS 359

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSG SEIRR+++ENDL+EAIV LPTDLF+ T I TY+W++S  K+  R GKVQ
Sbjct: 360 PLFVGDAGSGPSEIRRYIIENDLLEAIVQLPTDLFYNTGITTYIWLISKNKSARRTGKVQ 419

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFG 474
           LI+A++++   R   G KR  +++  R  I++ Y   EN  +        S++ +   FG
Sbjct: 420 LIDASNMYIKRRTSLGNKRVELDECCREAIVNAYGDFENKHYEYDKKSVESKIFNNEDFG 479

Query: 475 YRRIKVLRP 483
           Y +I V  P
Sbjct: 480 YYKIVVESP 488



 Score = 44.3 bits (103), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 582 IPDTNLTEYENVPYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           + D +  + ENVP +      E I++YF +EV P+  DA++D+           ++GYEI
Sbjct: 504 VADPSKRDTENVPMILGKDQDEVIKEYFEKEVLPYNQDAWVDE--------NKTKIGYEI 555

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            F R FY+Y    K + I   +  +E  +   L+ +
Sbjct: 556 PFTRHFYKYVAPEKSEVIAERISAIENDLMGSLKSL 591


>gi|145633686|ref|ZP_01789412.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 3655]
 gi|145635503|ref|ZP_01791203.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittAA]
 gi|229845498|ref|ZP_04465627.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 6P18H1]
 gi|144985446|gb|EDJ92267.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 3655]
 gi|145267268|gb|EDK07272.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittAA]
 gi|229811601|gb|EEP47301.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 6P18H1]
          Length = 793

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 257/810 (31%), Positives = 388/810 (47%), Gaps = 174/810 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ GY FYNTS+++L +L  T +        N E Y+  FS N + I + 
Sbjct: 68  -TELDDLPLKKITGYVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIKC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIR 164
           F  S  I  +    +L  + + F    I L P    D       V++N     ++E LIR
Sbjct: 127 FKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKSQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFAP 474

Query: 447 DQRRQILDIYV-----SRE-------NGKFSRMLDYRTFGYRRIKV-------------- 480
           +   +I   Y+     +RE        G  S++ D + FGY ++ +              
Sbjct: 475 EHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 481 LRPLR--------MSFILDKTG--------LARLEADIT--------------------- 503
           + PLR        M ++  + G        LA+ E +IT                     
Sbjct: 535 IEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDV 594

Query: 504 --WRKLSPLHQSF----------WLDILKPMMQQI--------YPYGWAE--------SF 535
             W K + L Q+             D      Q +         P    E        S+
Sbjct: 595 KTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKAGKIPLSATEKKAVFNAVSW 654

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI---PD 584
             E+     AKTLK+K ++      ++A   R   +AD + D         GE+I     
Sbjct: 655 YNENAAKVIAKTLKLKPNE------LDALCQRYQCQADGLADFGYYATGKAGEYIQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           +P R L ++  ++  +E Q   L+ E+  E
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEILGE 790


>gi|317132750|ref|YP_004092064.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470729|gb|ADU27333.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 668

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 234/697 (33%), Positives = 353/697 (50%), Gaps = 74/697 (10%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           S+ +FIW  A+D   D +    +  VILP T++RRL+  LE T+ AV         + ID
Sbjct: 8   SIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTKKAVLTMKKQLEAAKID 67

Query: 69  LE--SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDFDFSS 122
            +  +    AG +F N S + L  L S   +  LE+    Y+  FS N + I + F F  
Sbjct: 68  NQWPALCNTAGQAFCNDSPFLLKDLTSRAKKQTLEADFKAYLDGFSPNVQEILDKFKFRD 127

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSNIYEHLIRRF 166
            I  +  A +L  +   F  S I L PD V               +  M  I+E LIRRF
Sbjct: 128 QIKTMVDADILGAVIDKFTSSDINLSPDPVYKDAEKKIVKLPGLDNHGMGTIFEELIRRF 187

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L   P +   K++     + YD  CGTGG LT A   
Sbjct: 188 NEENNEEAGEHWTPRDVVELMADLAFYPVEDQIKDA---TYSCYDGACGTGGMLTVAQAR 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +            +   GQE++PET+A+C A ML   L+ D     +++I  GSTLS D 
Sbjct: 245 LLTLAGRRGKNVSIHLFGQEVQPETYAICKADML---LKGDGEE--AEHIFYGSTLSLDG 299

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLF 338
              ++F + LSNPP+GK W+ D D +  + E  +     + PG      +P+ SDG +LF
Sbjct: 300 NPSRQFDFMLSNPPYGKSWKTDADKMGGKSEILDTRFNAYLPGGEELKMIPRTSDGQLLF 359

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L++  +K++     G R   V + S LF G AGSGES  RR+++E DL+EAI+ALP ++F
Sbjct: 360 LLNNVSKMKTDTELGSRIIEVHNGSSLFTGDAGSGESNARRYMIERDLVEAIIALPDNMF 419

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYV 457
           + T I TY+W+LSN+K E R+GK+QLI+AT++ +S+R N G K      + R++I+ I++
Sbjct: 420 YNTGIGTYIWVLSNKKEERRKGKIQLIDATNMKSSLRKNMGNKNCEFTPEIRKEIVRIFL 479

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             E    S + D   FGY  + V RPLR+    +     R   + T++K S       LD
Sbjct: 480 DMEESDVSMIFDNSEFGYWNVTVERPLRLRVFPE-----REIPEDTFKKQSE------LD 528

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
            ++  +    P G          K+ + K  ++K  + FI          DP A    +V
Sbjct: 529 SVREAVANA-PVGTPLDDWDAFAKATKLKKTQLKKIRPFIT-------ETDPHA---KEV 577

Query: 578 NGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
            GE   D NL + EN+P  Y   I  +  +EV P+ PDAY+        D+   ++GYEI
Sbjct: 578 EGE--SDPNLRDSENIPFNYDGGIDAFIEKEVKPYAPDAYV--------DESKTKIGYEI 627

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +F ++FY+    R ++DI A LK +E +   +++E+ 
Sbjct: 628 SFTKYFYKPVQLRDMKDILASLKELERESDGVMDEIV 664


>gi|309776567|ref|ZP_07671547.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915668|gb|EFP61428.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 669

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 235/693 (33%), Positives = 351/693 (50%), Gaps = 75/693 (10%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            + NFIW  A+D   D +    +  VILP T++RRL+  LE T   VR        + ID
Sbjct: 10  QIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTVDKVRSTKKMLDENKID 69

Query: 69  LE--SFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSS 122
            +  +    AG SF N S + L  L S   +  L    E+Y+  FS NA+ I E F F +
Sbjct: 70  NQWPALCNAAGQSFCNASPFLLKDLTSRANKQKLKTDFETYLDGFSPNAQEILEKFKFRN 129

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSNIYEHLIRRF 166
            IA +  A +L  + + F  S I L P  +               +  M  I+E LIR+F
Sbjct: 130 QIATMIDADILGSVIEKFVSSDINLSPYEIYKDDEKTILKHPGLDNHGMGTIFEELIRKF 189

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P +   K++     T YD  CGTGG LT A + 
Sbjct: 190 NEENNEEAGEHWTPRDVVELMADLIFMPIEDQIKDA---TYTCYDGACGTGGMLTVAQDR 246

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +    S       +   GQE++PET+A+C A ML   L+ D  +  +++I  GSTLS D 
Sbjct: 247 LQTLASRRGKNVSIHLFGQEVQPETYAICKADML---LKGDGEQ--AEHIAYGSTLSADG 301

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNG------ELGRFGPGLPKISDGSMLF 338
              ++F + L+NPP+GK W+ D + +  +KE  +       E G     +P+ SDG +LF
Sbjct: 302 NATRQFDFMLANPPYGKSWKVDAEKMGGKKEILDTRFNTYLEDGTEMKMIPRTSDGQLLF 361

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L++   K++     G R A V + S +F G AGSGES  RR+++ENDL+EAI+ALP ++F
Sbjct: 362 LLNNVAKMKKDSPLGSRIAEVHNGSSIFTGDAGSGESNARRYMIENDLVEAIIALPENMF 421

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYV 457
           + T I T++W+LSN+K E R+GK+QLI+AT + + +R + GKK      D R++I+ I++
Sbjct: 422 YNTGIGTFIWVLSNKKEERRKGKIQLIDATAMKSPLRKKMGKKNCEFTSDIRKEIMRIFL 481

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             E  + S++ D   F Y  + V RPLR+    D+     + AD T++K           
Sbjct: 482 EMEESEVSKIFDNNDFAYWNVTVERPLRLRVFADRV----IPAD-TFKKADEYETVT--- 533

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                     P     +F K       A  LK KA  + I  FI     KD  A  + + 
Sbjct: 534 TAIAKAAATAPLDDWSAFAK-------ATKLK-KAQLNKIRPFIT---EKDVTAVAIDE- 581

Query: 578 NGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                PD++L + EN+P  Y   I+ +   EV  + PDAY     IDEK  +I   GYEI
Sbjct: 582 -----PDSDLRDTENIPFTYEGGIETFMQNEVLTYAPDAY-----IDEKKTQI---GYEI 628

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           +F ++FY+    R++ DI   L  +E +   ++
Sbjct: 629 SFTKYFYKPAELREMADIIENLNSLEKEADGMM 661


>gi|257091989|ref|YP_003165630.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044513|gb|ACV33701.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 687

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 276/471 (58%), Gaps = 33/471 (7%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-DLESFVKV-------AGYSFYNTSEY 86
           +LP T+LRR +  L P++ AV +++       I ++++ +             F+N S+ 
Sbjct: 1   MLPLTVLRRFDAVLAPSKEAVLKRHAELSSKGIPNIDAILNYRAKDEDGTALGFHNHSQL 60

Query: 87  SLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
               L     N   +L  YIA FS+N + IFE F+F   I +LE++  LY++   F+ I+
Sbjct: 61  DFPELKGDPDNIGRHLADYIAGFSENIRKIFERFEFEKEIEKLEESNRLYQVVAQFAEID 120

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LHP  V +  M  ++E LIRRF    +E A D  TPR+V+ L   LLL+PD ++  ++ G
Sbjct: 121 LHPRKVDNITMGLVFEDLIRRFNEAANETAGDHFTPREVIQLMVNLLLEPDTSVLTQA-G 179

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +I T+ DP CGTGG L +A N +    +H++   + V  GQ+  P ++AV  + +LI+  
Sbjct: 180 VIVTICDPACGTGGMLAEAQNWIR---AHNEQATVKV-FGQDYNPRSYAVAASDLLIKGH 235

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-EHKNGELGR 323
           +          +  G+TL+ D F   RF Y L+NPPFG  W+ ++  +++  +  G  G+
Sbjct: 236 KD-------GQVMLGNTLTDDPFPEHRFDYLLANPPFGVDWKAERKVIDRWPNFRGYSGK 288

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNG-----GGRAAIVLSSSPLFNGRAGSGESEIR 378
               LP+I+DG++LFL+++ +K +   +G     G R AIV + SPLF G AGSGESEIR
Sbjct: 289 ----LPRINDGALLFLLYMMSKFQDYKSGDRDKPGSRTAIVFNGSPLFTGGAGSGESEIR 344

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNE 437
           RW++E D +EAIVALP  +F+ T I T++W+++NRK   R+ K+QLI+A + +T + R+ 
Sbjct: 345 RWIIERDQLEAIVALPEQMFYNTGIGTFIWVVTNRKAAHRKCKIQLIDARERYTPMKRSL 404

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           G KRR ++      +   + + EN K SR+ D   FGYRRI VLRPLR+ F
Sbjct: 405 GDKRRYLDQTALDAVTREHGAMENSKTSRVFDNTDFGYRRITVLRPLRLRF 455



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 2/129 (1%)

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRA--DPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
            + L    +K  + A +       PRA       V  E+ PD  L + E+VP  E I  Y
Sbjct: 557 GQALPADITKDELYALLGLHKLPSPRARGAGAEGVCIEYEPDPALKDTESVPLKEDIVSY 616

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
            +REV P+V DA+ID+  +DE+D  IG+VGYEINFNR F+QYQP R L++IDAEL  VE 
Sbjct: 617 VLREVRPYVADAWIDRETLDEQDGGIGKVGYEINFNRVFFQYQPPRPLREIDAELAEVEK 676

Query: 663 QIATLLEEM 671
           +I  LL E+
Sbjct: 677 RILGLLSEV 685


>gi|148926925|ref|ZP_01810602.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845009|gb|EDK22106.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 636

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 222/690 (32%), Positives = 356/690 (51%), Gaps = 91/690 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + NFIW  A+DL  D +    +  VILP T++RR++  LEPT+  V + Y  +     +L
Sbjct: 9   IVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENL 68

Query: 70  ESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +
Sbjct: 69  ESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQL 128

Query: 125 ARLEKAGLLYKICKNFS------GIELHPD---TVPDRVMSN-----IYEHLIRRFGSEV 170
             LE++ +L+ + + F       GIE   D    V  + +SN     ++E LIR+F  E 
Sbjct: 129 DTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEEN 188

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPR+++ L T L+  P     K+   +I   YD  CG+GG LT++   + D 
Sbjct: 189 NEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWLI---YDNACGSGGMLTESKEFITDP 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +    +  +GQE+ PET+A+C A MLI+    +P R     I+ GSTLS D     
Sbjct: 246 EGLIQSKANIYLYGQEINPETYAICKADMLIKG--ENPER-----IKFGSTLSNDQ-QNL 297

Query: 291 RFHYCLSNPPFGKKWEKDKD--AVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLANKL 346
           +F + LSNPP+GK WE D+    VEK+  N      RF  G+   SDG M+FL+++ +K+
Sbjct: 298 QFDFMLSNPPYGKSWENDQKILGVEKKGLNSTCNDPRFSVGITSKSDGQMMFLLNMLSKM 357

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     G R A V + S LFN  + SG   IR+ ++END +EAIVALPT++F+ T I T+
Sbjct: 358 KFDTPLGSRIASVHNGSSLFN--SDSGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTF 415

Query: 407 LWILSNRKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK 463
           +WI++N+K+E ++GKVQLIN T  + ++ ++   G K+  +  +   +I  +++   + K
Sbjct: 416 IWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASNK 475

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPM 522
             ++LD   FGY +I + +P  +  + D    A+L + D    KL  L Q+         
Sbjct: 476 DCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLQELEQN--------- 526

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
                          +  K+ E               FI   G K  +++    ++ +  
Sbjct: 527 --------------PQDFKNRE--------------EFIKFLGVKLKKSEENLIIDSDKT 558

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
            +T     E +P   +IQ Y+  EV P+V +++I          E   VGYEI F+++FY
Sbjct: 559 NNT-----EKIPLKTNIQGYYDTEVKPYVANSWI--------AWESASVGYEILFSKYFY 605

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            Y P RKL++I+ EL+ +E ++  LL E+ 
Sbjct: 606 TYTPPRKLEEINNELEKLEKEVQDLLREIV 635


>gi|187779697|ref|ZP_02996170.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC
           15579]
 gi|187773322|gb|EDU37124.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC
           15579]
          Length = 704

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 230/721 (31%), Positives = 355/721 (49%), Gaps = 82/721 (11%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSN 66
            + NFIW  A+D   D +    +  VILP T++RRL+  LEPT+ AV +  K L   G  
Sbjct: 4   QIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEPTKEAVLQMKKKLDKAGIV 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE----SYIASFSDNAKAIFEDFDFSS 122
               +   VAG +F NTS + L  L S   +  L+    +Y+  FS N + I E F F +
Sbjct: 64  NQTSALCSVAGQAFCNTSPFMLKDLKSRVKQQQLKLDFITYLDGFSPNVQEILEKFKFRN 123

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            I  + +A +L  + + F    ++    P              +  M +I+E LI +F  
Sbjct: 124 QIDTMIEADILGSVIEKFVDPRINLSVEPVLDDNGEVKLPALENHTMGSIFEELIHKFNE 183

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPR VV L   +   P     K+   ++   YD  CGTGG LT A   + 
Sbjct: 184 ENNEQAGEHFTPRHVVELMADITFLPVVDKIKDGSYLV---YDGACGTGGMLTIAEKRLQ 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +    +     +  +GQE+ PET+A+  A ML++          + NI  GSTLS D F+
Sbjct: 241 ELAKENNKQISINLYGQEINPETYAITKADMLLK-----GEGKQADNIAYGSTLSNDKFS 295

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFG---------PGLPKISDGSMLF 338
              F + LSNPP+GK W+ D + +  KEH      RF            +P+ SDG +LF
Sbjct: 296 TTNFDFMLSNPPYGKSWKTDLNKLGGKEHITDP--RFAVTHNNESDFKMIPRSSDGQLLF 353

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L +  +K++     G R   V + S LF G AG GES +RR+++END +EAI+ALP ++F
Sbjct: 354 LANKISKMKQNTELGSRIVEVHNGSSLFTGDAGQGESNLRRYIIENDWLEAIIALPENMF 413

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYV 457
           + T IAT++W+++NRK + R GKVQLI+ATDL + +R N+G K   +  + R+ I DI +
Sbjct: 414 YNTGIATFIWVVANRKPKHRMGKVQLIDATDLKSPLRKNQGNKNCELTPEIRKVITDILI 473

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           + E    S++ D + FGY +I V +PLR+S  L K  +         +K + L    +  
Sbjct: 474 NFEENDKSKIFDNKEFGYWKITVEKPLRLSVDLSKENIEEFSKICEEQKDTELMDIIYTL 533

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD- 576
             K   +++  Y     F+ E  K   A  L +K S   +    N   + D  A+ V   
Sbjct: 534 GDKFQHKKLTNYNL---FLDELKKI--ASNLNIKLSSKRLKLVKNNLAKVDEVAEKVIKR 588

Query: 577 -----------VNG-------------EWIPDTNLTEYENVPYLE--SIQDYFVREVSPH 610
                      + G             E+  D+NL + E +P L    I+ +F  EV P 
Sbjct: 589 IIKPGKVEKNPLYGLFNENIEDEYHIVEYEADSNLRDTEEIPLLHEGGIEKFFKDEVLPF 648

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
             DA+I        DK   ++GY+I+F+++FY+    R L +I A++K +E++   LL E
Sbjct: 649 NKDAWI--------DKSKTQIGYKISFSKYFYKPIKLRDLNEIKADIKILESETDGLLNE 700

Query: 671 M 671
           +
Sbjct: 701 I 701


>gi|168362838|ref|ZP_02696012.1| type I restriction-modification system specificity subunit
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|171903053|gb|EDT49342.1| type I restriction-modification system specificity subunit
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
          Length = 725

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 227/732 (31%), Positives = 369/732 (50%), Gaps = 96/732 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP T++RR +  +EP ++ + +          D+
Sbjct: 13  LISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGWDV 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTI 124
              +  A G  FYNTS + L  L     R NL    E Y+  FS+N K I + FDF++ +
Sbjct: 73  AKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNNQL 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++  AG+L  + + F+  EL+                 + +  M  ++E +IR+F  E 
Sbjct: 133 TKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + D 
Sbjct: 193 NEEAGEHFTPRDVIELMADITMYPIMDKIKDGT---YSIYDGACGTLGMGTVAEERLKDF 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +G+
Sbjct: 250 AKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTSGQ 304

Query: 291 RFHYCLSNPPFGKKWEKD-------------KDAVEKEH-KNGELGRFGPGLPKISDGSM 336
            F + LSNPP+GK W+ D             K+ ++K   +N +       +P +SDG +
Sbjct: 305 HFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDGQL 364

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP +
Sbjct: 365 LFLLNNISKMK-ETELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLPEN 423

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           +F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL+ 
Sbjct: 424 MFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFILNE 483

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++   K+        
Sbjct: 484 YLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKEL--EKIGATTGK-- 539

Query: 516 LDILKPMMQQIYPYGWAESF----VKESIKSNEAKTLKVKASKSFI--VAFINAFGR--- 566
             I K ++ + +  G A S      KE+IK+      ++++S+ ++   AF  AF +   
Sbjct: 540 --IDKKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLK 597

Query: 567 -----------------------KDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQD 601
                                  +D  A+  TD  G  I D  L + E++P  ++  I +
Sbjct: 598 NKNIKGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDE 657

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           +  +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++DI   +K +E
Sbjct: 658 FIRQEVLPYHEDA-----FVDESKTQI---GYEINFTKYFYKSKKLESVEDIVCRIKELE 709

Query: 662 ----AQIATLLE 669
                 +AT+LE
Sbjct: 710 KRSDGMMATVLE 721


>gi|315638762|ref|ZP_07893935.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481171|gb|EFU71802.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 640

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 222/696 (31%), Positives = 353/696 (50%), Gaps = 101/696 (14%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGG 64
           + +FIW  A+DL  D +    +  VILP T+LRRL+  LEPT+  V E Y     +A   
Sbjct: 9   IISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDIADED 68

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           +  DL      +  +FYN S ++L  L     N R N E+Y+  FS N K I   F F +
Sbjct: 69  TLKDL--LCDASKSTFYNHSNFTLKKLLNDPKNIRINFENYLDGFSGNIKDIISKFKFRN 126

Query: 123 TIARLEKAGLLYKICKNFS----GIELHPDTVPDRV-----------MSNIYEHLIRRFG 167
            +  L++A +LY + + F      + +H D   D+            M  ++E LIR+F 
Sbjct: 127 QLDTLDEAKILYGVIERFCSPKINLSMH-DIKNDKGEILHKGLSNLGMGYVFEELIRKFN 185

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            E +E A +  TPR+++ L T L+  P  D + K +     ++YD  CG+GG LT++   
Sbjct: 186 EENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKGA----FSIYDNACGSGGMLTESKEF 241

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D     +    +  +GQE+ PET+A+C A MLI+    D       NI+ GSTLS+D 
Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLPKISDGSMLFLMHL 342
             G++F + L+NPP+GK WEKD+  +    K G       RF  G+   SDG M+FL+++
Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDARFQAGITSKSDGQMMFLLNM 354

Query: 343 ANKLELPP--NG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +K++ P   NG G R A V + S LFN  + SG   IR++++END +EAI+ALPT++F+
Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFN--SDSGMVAIRKYIMENDFLEAIIALPTNMFY 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRNE-GKKRRIINDDQRRQILDIY 456
            T I T++WIL+N KT+ ++GKVQLINAT    +T ++   G+K+  +      +I +++
Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATKEAYYTKMKKSLGQKQNEMTKTHIDKITELF 472

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFW 515
           ++       ++ +   FGY +I + RP  +  +L+      LE  D    KL  L  +  
Sbjct: 473 LTNIENDDCKIYNNDEFGYTKITIERPKSIEILLNDEKFQALEQKDELVSKLKELEAN-- 530

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                            + F  +                     FIN    K  +A+   
Sbjct: 531 ----------------PQDFTSKE-------------------DFINFLDVKLKKAEENL 555

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
            ++ +   +T     E +P  + IQ Y+  EV P+VP+++I          E   +GYEI
Sbjct: 556 LIDSDKTNNT-----EKIPLTQDIQSYYENEVKPYVPNSWI--------AWESKAIGYEI 602

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FN++FY Y P R L+ ID +L+ +E +   LL+++
Sbjct: 603 LFNKYFYTYTPPRSLESIDKDLQDLEQETQDLLKQI 638


>gi|295394612|ref|ZP_06804831.1| type I restriction-modification system methyltransferase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972505|gb|EFG48361.1| type I restriction-modification system methyltransferase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 666

 Score =  314 bits (804), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 211/669 (31%), Positives = 359/669 (53%), Gaps = 52/669 (7%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REK 58
           T    SL   IW+ A+D L       ++G  I+PFT+LRRLE  L PT+ AV     RE 
Sbjct: 16  TAKVNSLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLAPTKQAVLNLVEREN 75

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT--RNNLESYIASFSDNAKAIFE 116
                 + + L+   K     F+NTSE SL  L +++   +  L+ Y+ +FS N   I+ 
Sbjct: 76  AQGTDPAIVGLKIENKFK-LRFWNTSELSLERLANSDDALKPGLKQYLNTFSPNILEIWN 134

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F+F   I  L++   L+ + ++F+ I++  + + D+ M +I+E+L+ R  +   + A +
Sbjct: 135 AFEFDKLIDLLDRNNQLWNVVQHFASIDMSDEALQDQTMGDIFENLMYRSFARKGKDAGE 194

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPRD + L T++L   +D   +E  G+IR++YDPT GT G L  A + +       ++
Sbjct: 195 FYTPRDAIRLMTSILFTSNDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIEV 253

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
               V  GQEL+  + A+  + +L++  + DP     + ++ G++L  D + G  F Y +
Sbjct: 254 ----VVAGQELKESSFAMGKSDLLMQGFK-DP-----EVLKFGNSLINDQYAGDTFDYIM 303

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---G 353
           +NPP+G  W+  +  V+K  + G+  RF  GLP +SDG MLFLMH+A+KL  P +G   G
Sbjct: 304 ANPPYGSSWKAFQKDVKKLQEQGD-PRFSEGLPAVSDGQMLFLMHIAHKLA-PADGTTKG 361

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLE----NDLIEAIVALPTDLFFRTNIATYLWI 409
           GRAA+V + SPLF G   SG   IR++L+     +++++AI+ALP D+F+ T+IATY+WI
Sbjct: 362 GRAAVVTNGSPLFTGDPESGPDGIRKYLMGAQGGSEVLDAIIALPNDMFYNTDIATYIWI 421

Query: 410 LSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           L   K   RRG++QLI+AT +   +R N GKKR  +++D  R+I  +Y   E  + S ++
Sbjct: 422 LDQNKEPRRRGRIQLIDATGISAPMRKNMGKKRVELSEDNIREITKLYKDFEQNERSIIV 481

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 YR + + +    +  + +  +A     ++ +     H++    +++ M  + Y 
Sbjct: 482 TADDLTYRDVPMFKVAHYAVNVTEETVAEA---MSHKSALAEHEA----VIREMKGREY- 533

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
                + +  ++K + AK   VK     +   + A   +D  A    D  G  I D +  
Sbjct: 534 -----NELPAALKVS-AKAHGVKMGAPLLRHIVKALAVEDQNAPASLDEKGNPIVDASSK 587

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
             E +PYL+ + ++  RE+ P VPD         + D+ + +VG E+   R FY+ Q +R
Sbjct: 588 VIERIPYLDDVSEHMEREILPFVPDM--------QWDESLAKVGTELPLTRLFYKPQETR 639

Query: 649 KLQDIDAEL 657
            L+++DA++
Sbjct: 640 SLEELDADI 648


>gi|255102541|ref|ZP_05331518.1| type I restriction-modification system specificity subunit
           [Clostridium difficile QCD-63q42]
          Length = 725

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 224/728 (30%), Positives = 367/728 (50%), Gaps = 92/728 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP T++RR +  +EP ++ + +          D+
Sbjct: 13  LISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGWDV 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTI 124
              +  A G  FYNTS + L  L     R NL    E Y+  FS+N K I + FDF++ +
Sbjct: 73  AKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNNQL 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++  AG+L  + + F+  EL+                 + +  M  ++E +IR+F  E 
Sbjct: 133 TKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + D 
Sbjct: 193 NEEAGEHFTPRDVIELMADITMYPIMDKIKDGT---YSIYDGACGTLGMGTVAEERLKDF 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +G+
Sbjct: 250 AKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTSGQ 304

Query: 291 RFHYCLSNPPFGKKWEKD-------------KDAVEKEH-KNGELGRFGPGLPKISDGSM 336
            F + LSNPP+GK W+ D             K+ ++K   +N +       +P +SDG +
Sbjct: 305 HFDFMLSNPPYGKSWKMDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDGQL 364

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP +
Sbjct: 365 LFLLNNISKMK-ETELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLPEN 423

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           +F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL+ 
Sbjct: 424 MFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFILNE 483

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++   K+        
Sbjct: 484 YLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKEL--EKIGATTGK-- 539

Query: 516 LDILKPMMQQIYPYGWAESF----VKESIKSNEAKTLKVKASKSFI--VAFINAFGR--- 566
             I K ++ + +  G A S      KE+IK+      ++++S+ ++   AF  AF +   
Sbjct: 540 --IDKKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLK 597

Query: 567 -----------------------KDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQD 601
                                  +D  A+  TD  G  I D  L + E++P  ++  I +
Sbjct: 598 NKNIKGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDE 657

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           +  +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++DI   +K +E
Sbjct: 658 FIRQEVLPYHEDA-----FVDESKTQI---GYEINFTKYFYKAKKLENVEDIVCRIKELE 709

Query: 662 AQIATLLE 669
            +   ++E
Sbjct: 710 KRSDGMME 717


>gi|255657324|ref|ZP_05402733.1| type I restriction-modification system specificity subunit
           [Clostridium difficile QCD-23m63]
          Length = 725

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 224/728 (30%), Positives = 367/728 (50%), Gaps = 92/728 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP T++RR +  +EP ++ + +          D+
Sbjct: 13  LISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGWDV 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTI 124
              +  A G  FYNTS + L  L     R NL    E Y+  FS+N K I + FDF++ +
Sbjct: 73  AKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNNQL 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++  AG+L  + + F+  EL+                 + +  M  ++E +IR+F  E 
Sbjct: 133 TKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + D 
Sbjct: 193 NEEAGEHFTPRDVIELMADITMYPIMDKIKDGT---YSIYDGACGTLGMGTVAEERLKDF 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +G+
Sbjct: 250 AKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTSGQ 304

Query: 291 RFHYCLSNPPFGKKWEKD-------------KDAVEKEH-KNGELGRFGPGLPKISDGSM 336
            F + LSNPP+GK W+ D             K+ ++K   +N +       +P +SDG +
Sbjct: 305 HFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDGQL 364

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP +
Sbjct: 365 LFLLNNISKMK-ETELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLPEN 423

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           +F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL+ 
Sbjct: 424 MFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFILNE 483

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++   K+        
Sbjct: 484 YLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKEL--EKIGATTGK-- 539

Query: 516 LDILKPMMQQIYPYGWAESF----VKESIKSNEAKTLKVKASKSFI--VAFINAFGR--- 566
             I K ++ + +  G A S      KE+IK+      ++++S+ ++   AF  AF +   
Sbjct: 540 --IDKKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLK 597

Query: 567 -----------------------KDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQD 601
                                  +D  A+  TD  G  I D  L + E++P  ++  I +
Sbjct: 598 NKNIKGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDE 657

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           +  +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++DI   +K +E
Sbjct: 658 FIRQEVLPYHEDA-----FVDESKTQI---GYEINFTKYFYKAKKLESVEDIVCRIKELE 709

Query: 662 AQIATLLE 669
            +   ++E
Sbjct: 710 KRSDGMME 717


>gi|260581979|ref|ZP_05849774.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094869|gb|EEW78762.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 790

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 254/808 (31%), Positives = 385/808 (47%), Gaps = 176/808 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP+++AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFAP 474

Query: 447 DQRRQILDIYV-----SRE-------NGKFSRMLDYRTFGYRRIKVLR------------ 482
           +   +I   Y+     +RE        G  S++ D + FGY ++ + R            
Sbjct: 475 EHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 483 --PLR--------MSFILDKTG--------LARLEADIT--------------------- 503
             PLR        M ++  + G        LA+ E +IT                     
Sbjct: 535 IAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDV 594

Query: 504 --WRKLSPLHQSFWLDILKPMMQQIY-------------------PYGWAE--------S 534
             W K + L Q+  L +L+   +Q +                   P    E        S
Sbjct: 595 KTWEKAAALFQT-ALKLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRK-DPRADPVTDVN-------GEWI---P 583
           +  E+     AKTLK+K ++      ++A  R+   +AD + D         GE++    
Sbjct: 654 WYDENAAKVIAKTLKLKPNE------LDALCRRYQCQADELADFGYYATGKAGEYLQYET 707

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
            ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+
Sbjct: 708 SSDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYR 759

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ++P R L D+  ++  +E Q   L+ E+
Sbjct: 760 HKPLRSLADVAQDILALEKQTDGLISEI 787


>gi|162448115|ref|YP_001621247.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A]
 gi|161986222|gb|ABX81871.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A]
          Length = 593

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 292/541 (53%), Gaps = 54/541 (9%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GSNIDLE 70
           AN IW  A  L G FK  ++GKVILP T+L+R + AL+ T+  V            ID  
Sbjct: 18  ANLIWAIANHLVGLFKPHEYGKVILPMTVLKRFDDALKETKQEVLSLNKKLNEQKTIDAI 77

Query: 71  S---FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 K  GY FYN S ++   L +   N  +N ++Y+  FSDN K I  +F F   + 
Sbjct: 78  KDGLICKTTGYDFYNVSPFTFENLLADPDNIASNFDTYLKGFSDNVKDIISNFKFEQVLE 137

Query: 126 RLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + K  +LY + + F+    ++HPD +    M  I+E LIR+F     E A    T RD+
Sbjct: 138 TMHKGNVLYVVIQEFNSKKADMHPDKITSMDMGYIFEELIRKFSESYDEQAGAHFTSRDI 197

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG---GFLTDAMNHVADCGSHHKIPPIL 240
           ++L   LL+  +    K++ G+++T YD   GT    G L + M  +            L
Sbjct: 198 IYLMAELLVANEKEHIKQN-GVVKTAYDMAMGTSQMLGCLDEKMKEI-------NFDSKL 249

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE  PET+A+  A MLI+   +       +N++ G TLS D F+   F Y +SNPP
Sbjct: 250 SLFGQEFNPETYAIAKADMLIKGGNA-------QNMKFGDTLSDDQFSNYEFDYIISNPP 302

Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG  W+ ++  V++E+ K G  GRFGPGLP ISDG MLFL++   KL+    G GR AI+
Sbjct: 303 FGIDWKLEEKQVKQEYAKLGYDGRFGPGLPAISDGQMLFLLNGVKKLK---EGSGRMAII 359

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + S LF G AGSG SEIR++L+E+DL+EAI+ LPTDLF+ T I+TY+WI+S  K +ER 
Sbjct: 360 QNGSSLFTGDAGSGPSEIRKYLIESDLLEAIIQLPTDLFYNTGISTYVWIVSKNKNKERL 419

Query: 420 GKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDY 470
           GK+QLI+A++ +   R N GKKR  ++D     I   Y+  +  K+        S++ D 
Sbjct: 420 GKIQLIDASNCYVKRRKNIGKKRVDLDDTSIDLITKAYLDFKEVKYEENDLVVESKIFDN 479

Query: 471 RTFGYRRIKVLRPLRMSFILDKTG-----LARLEADITWR--KLSPLH---QSFWLDILK 520
             FGY ++ V  P     I D+ G       +L+AD   R  +L PL    ++F+ D + 
Sbjct: 480 DFFGYTKVTVESP-----ITDENGKPILKKGKLQADSKKRDTELVPLQENIEAFFKDNVL 534

Query: 521 P 521
           P
Sbjct: 535 P 535



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 15/106 (14%)

Query: 573 PVTDVNGEWI-------PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           P+TD NG+ I        D+   + E VP  E+I+ +F   V P+   A++D+     KD
Sbjct: 492 PITDENGKPILKKGKLQADSKKRDTELVPLQENIEAFFKDNVLPYNSSAWMDR----SKD 547

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           K    VGYEI F R FY++ P +   DI AE+K +E +   L++E+
Sbjct: 548 K----VGYEIPFTRLFYKFIPPKASSDIFAEIKQLEEEETQLMKEL 589


>gi|145629011|ref|ZP_01784810.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145639606|ref|ZP_01795210.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|144978514|gb|EDJ88237.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145271397|gb|EDK11310.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|162949228|gb|ABY21301.1| probable type I secretion system methylase [Haemophilus influenzae]
 gi|309750478|gb|ADO80462.1| Probable type I restriction modification system, methylase
           component HsdM2 [Haemophilus influenzae R2866]
          Length = 790

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 252/807 (31%), Positives = 383/807 (47%), Gaps = 174/807 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVKLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFAP 474

Query: 447 DQRRQILDIYV-----SRE-------NGKFSRMLDYRTFGYRRIKVLR------------ 482
           +   +I   Y+     +RE        G  S+M D + FGY ++ + R            
Sbjct: 475 EHIAEITQNYLDFTAKAREIDSQNEAVGLASQMFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 483 --PLR--------MSFILDKTG--------LARLEADIT--------------------- 503
             PLR        M ++  + G        LA+ E +IT                     
Sbjct: 535 IEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDV 594

Query: 504 --WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE----------------- 544
             W K + L Q+    +     QQ + +   +  V+  +K+ +                 
Sbjct: 595 KTWEKAAALFQTASKLLKHFGEQQFHDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSW 654

Query: 545 ---------AKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI---PD 584
                    AKTLK+K ++      ++A   R   +AD + D         GE+I     
Sbjct: 655 YNENAAKVIAKTLKLKPNE------LDALCQRYQCQADELADFGYYATGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|148825621|ref|YP_001290374.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittEE]
 gi|148715781|gb|ABQ97991.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittEE]
 gi|309972765|gb|ADO95966.1| Probable type I restriction modification system, methylase
           component HsdM2 [Haemophilus influenzae R2846]
          Length = 790

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 258/807 (31%), Positives = 382/807 (47%), Gaps = 174/807 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRN----NLESYIASFSDNAKAIFED 117
            + +D     K+ GY FYNTS+++L +L  T  NT      N E Y+  FS N + I + 
Sbjct: 68  -TELDDLPLKKITGYVFYNTSKWTLKSLYQTAGNTPQHMLANFEEYLDGFSTNVQEIIKC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F  S  I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEDNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFAP 474

Query: 447 DQRRQILDIYV-----SREN-------GKFSRMLDYRTFGYRRIKVLR------------ 482
           +   +I   Y+     +RE        G  S++ D + FGY ++ + R            
Sbjct: 475 EHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 483 --PLR--------MSFILDKTG--------LARLEADI---------------------- 502
             PLR        M ++  + G        LA+ E +I                      
Sbjct: 535 IAPLRFDKALFEPMQYLYQQHGEQVYNAEYLAKTEPEISTWCEAQGIALNNKNKAKLLDV 594

Query: 503 -TWRKLSPLHQ----------SFWLDILKPMMQQI--------YPYGWAE--------SF 535
            TW K + L Q          S   D      Q +         P    E        S+
Sbjct: 595 KTWEKAATLFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKTEKIPLSATEKKAIFNAVSW 654

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI---PD 584
             E+     AKTLK+K ++      ++A   R   +AD + D         GE+I     
Sbjct: 655 YNENAAKVIAKTLKLKPNE------LDALCQRYQCQADELADFGYYATGKAGEYIQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNILDYFKAEVQPHISEAWLNM--------ENVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|148827246|ref|YP_001291999.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittGG]
 gi|148718488|gb|ABQ99615.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittGG]
          Length = 790

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 254/807 (31%), Positives = 380/807 (47%), Gaps = 174/807 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNEETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFAP 474

Query: 447 DQRRQILDIYV-----SREN-------GKFSRMLDYRTFGYRRIKVLR------------ 482
           +   +I   Y+     +RE        G  S++ D + FGY ++ + R            
Sbjct: 475 EHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 483 --PLR--------MSFILDKTG--------LARLEADI---------------------- 502
             PLR        M ++  + G        LA+ E +I                      
Sbjct: 535 IAPLRFDKALFEPMQYLYQQHGEQIYNAGFLAKTEPEISTWCEAQGIALNNKNKAKLLDV 594

Query: 503 -TWRKLSPLHQ----------SFWLDILKPMMQQI--------YPYGWAE--------SF 535
            TW K + L Q          S   D      Q +         P    E        S+
Sbjct: 595 KTWEKAAALFQTASKLLEHFGSTQFDDFNQFKQAVEGRLKAEKIPLSATEKKAIFNAVSW 654

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAF-GRKDPRADPVTDVN-------GEWI---PD 584
             E+     AKTLK+K ++      ++A   R   +AD + D         GE+I     
Sbjct: 655 YDENAAKVIAKTLKLKPNE------LDALCQRYQCQADELADFGYYATGKAGEYIQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +  R L+++  ++  +E Q   L+ E+
Sbjct: 761 KSLRSLEEVTQDILALEKQADGLISEI 787


>gi|57506068|ref|ZP_00371991.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis
           RM3195]
 gi|57015676|gb|EAL52467.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis
           RM3195]
          Length = 639

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 223/695 (32%), Positives = 356/695 (51%), Gaps = 99/695 (14%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGG 64
           + +FIW  A+DL  D +    +  VILP T+LRRL+  LEPT+  V E Y     +A   
Sbjct: 9   IISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDIADED 68

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           +  DL      +  +FYN S ++L  L     N R N E+Y+  FS+N K I   F F +
Sbjct: 69  TLKDL--LCDASKSTFYNYSNFTLKKLLNDPKNIRINFENYLDGFSENIKDIISKFKFRN 126

Query: 123 TIARLEKAGLLYKICKNFSG--IELHPDTVPD-------RVMSN-----IYEHLIRRFGS 168
            +  L++A +LY + + F    I L    + D       + +SN     ++E LIR+F  
Sbjct: 127 QLDTLDEAKILYGVIERFCSPKINLSMHDIKDDKGEILHKGLSNLGMGYVFEELIRKFNE 186

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           E +E A +  TPR+++ L T L+  P  D + K +     ++YD  CG+GG LT++   +
Sbjct: 187 ENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKGA----FSIYDNACGSGGMLTESKEFI 242

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            D     +    +  +GQE+ PET+A+C A MLI+    D       NI+ GSTLS+D  
Sbjct: 243 IDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDKL 295

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLPKISDGSMLFLMHLA 343
            G++F + L+NPP+GK WEKD+  +    K G       RF  G+   SDG M+FL+++ 
Sbjct: 296 GGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDSRFQVGITSKSDGQMMFLLNML 355

Query: 344 NKLELPP--NG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           +K++ P   NG G R A V + S LFN  + SG   IR++++END +EAI+ALPT++F+ 
Sbjct: 356 SKMKKPKENNGLGSRIASVHNGSSLFN--SDSGMVAIRKYIIENDFLEAIIALPTNMFYN 413

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRNE-GKKRRIINDDQRRQILDIYV 457
           T I T++WIL+N KT+ ++GKVQLINAT+   +T ++   G+K+  +      +I ++++
Sbjct: 414 TGIPTFIWILTNNKTKAKKGKVQLINATNESYYTKMKKSLGQKQNEMTKTHIEKITELFL 473

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWL 516
           +       ++ D   FGY +I + RP  +  +L+      L + D    KL  L      
Sbjct: 474 TNRENDDCKIYDNAEFGYTKITIERPKSIEILLNDEKFQALKDKDKILAKLQEL------ 527

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
                   +I P    + F+ +                     FIN    K  +A+    
Sbjct: 528 --------EISP----QDFISKE-------------------DFINFLDVKLKKAEENLL 556

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
           ++ +   +T     E +P  + +Q Y+  EV P++ +A+I          E   VGYEI 
Sbjct: 557 IDSDKTNNT-----EKIPLTQDVQSYYENEVKPYMLNAWI--------AWESKVVGYEIL 603

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FN++FY Y   R L+ I+ +L+ +E +   LL E+
Sbjct: 604 FNKYFYTYTLPRSLEAINKDLQDLEQETQDLLREI 638


>gi|54308076|ref|YP_129096.1| putative DNA methylase HsdM [Photobacterium profundum SS9]
 gi|46912502|emb|CAG19294.1| putative DNA methylase HsdM [Photobacterium profundum SS9]
          Length = 793

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 242/797 (30%), Positives = 372/797 (46%), Gaps = 157/797 (19%)

Query: 14  FIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-----GSNI 67
           F W  A+D   D +    +  VILP  +LRRL+  LE T+  + E+ +AF       +  
Sbjct: 2   FSWSIADDCLRDVYVRGKYRDVILPMVVLRRLDSLLEATKKEILEE-VAFQRDEMESTEF 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFDFS 121
           D      + GY FYNTS+++L  + +T + N      N+E Y+  FSDN K I + F   
Sbjct: 61  DSAPLEAITGYVFYNTSKWTLKQITATASNNQQILLANVEEYLNGFSDNVKEIIKCFKLQ 120

Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIRRFGS 168
           S I  + +  +L  + + F+   I L P+ V D        +SN     ++E LIR+F  
Sbjct: 121 SQIRHMAEKDILLDVLEKFTSPNINLTPNVVEDPDGNKLPALSNLGMGYVFEELIRKFNE 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + +E A +  TPR+V+ L T L+ DP   L    P +I TLYDP CG+GG LT+A N + 
Sbjct: 181 DNNEEAGEHFTPREVIELMTHLVFDP---LKGNLPPVI-TLYDPACGSGGMLTEAQNFIK 236

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D     K    +   G+E+  ET+A+C + M+I+        D  +NI+ GSTLS D F 
Sbjct: 237 DPEGKIKATSDVYLFGKEINDETYAICKSDMMIKG-------DNPENIRVGSTLSTDEFA 289

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISDGS 335
           GK FHYCLSNPP+GK W  ++  + K+ K     RF                +P+ SDG 
Sbjct: 290 GKTFHYCLSNPPYGKSWASEQKYI-KDGKEVIDSRFKVKLKDYWGVEDTYEAIPRSSDGQ 348

Query: 336 MLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           +LFLM + +K++   NG  G R A V + S LF G AG GES IRR+++END++EAIV L
Sbjct: 349 LLFLMEMVSKMKSVNNGVEGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDMLEAIVQL 408

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P +LF+ T I TY+W+LSN K ++R+G+VQLI+A  L+  +R N G K    + +  R+I
Sbjct: 409 PNNLFYNTGITTYIWLLSNNKLDKRKGQVQLIDANPLYRKLRKNLGDKNCEFSPEHIREI 468

Query: 453 LDIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLR--------------- 485
              Y+                G  +++ D   FGY ++ +  P R               
Sbjct: 469 TKTYLDMTKVERTLDEKGDPQGISTKVFDNDDFGYYKVNIECPDRRNAQFSSERIETLRF 528

Query: 486 -------MSFILDKTGLARLEADI-------------------------------TWRKL 507
                  M +I +  G    +A+I                               TW +L
Sbjct: 529 DKALREPMEYIYNTYGEDAYKAEILAKESKAILAWCEEKEISLNTKNRNKLLDVATWTRL 588

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             L     +DI   +M+ I    + +    ++    E K+ K+K S     A +NA    
Sbjct: 589 GDL-----IDIANTLMKAIGTDIYNDYNQFKATVDAELKSRKIKLSAPEKNAILNAVSWY 643

Query: 568 DPRADPVTDVN--------GEWIPDTNLTEYENVP---YLESIQD------YFVREVSPH 610
              A+ V             E +   +  E+E      YL + +D      Y   E +  
Sbjct: 644 HENAEKVIKKKLKLTGSKLDELLTSCDCDEHELGDFGYYLIAKEDGGKAGEYITYESNSD 703

Query: 611 VPDA-------YIDKIFIDEKDKEIG---------RVGYEINFNRFFYQYQPSRKLQDID 654
           + DA        I + F+DE    +          ++GYEI+FN+ FYQ++P R + D+ 
Sbjct: 704 LRDAESIPLKQSIYQYFLDEVKPHVSDSWINIDSTKIGYEISFNKHFYQHKPLRSIDDVA 763

Query: 655 AELKGVEAQIATLLEEM 671
            ++  +E +   L+ E+
Sbjct: 764 KDIIALEQKAEGLMAEI 780


>gi|229847072|ref|ZP_04467178.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 7P49H1]
 gi|229810156|gb|EEP45876.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 7P49H1]
          Length = 790

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 254/808 (31%), Positives = 384/808 (47%), Gaps = 176/808 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP+++AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNEETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFAP 474

Query: 447 DQRRQILDIYV-----SRE-------NGKFSRMLDYRTFGYRRIKVLR------------ 482
           +   +I   Y+     +RE        G  S++ D + FGY ++ + R            
Sbjct: 475 EHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 483 --PLR--------MSFILDKTG--------LARLEADIT--------------------- 503
             PLR        M ++  + G        LA+ E +IT                     
Sbjct: 535 IAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDV 594

Query: 504 --WRKLSPLHQSFWLDILKPMMQQIY-------------------PYGWAE--------S 534
             W K + L Q+  L +L+   +Q +                   P    E        S
Sbjct: 595 KTWEKAAALFQT-ALKLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRK-DPRADPVTDVN-------GEWI---P 583
           +  E+     AKTLK+K ++      ++A  R+   +AD + D         GE+I    
Sbjct: 654 WYDENSAKVIAKTLKLKPNE------LDALCRRYQCQADELADFGYYATGKAGEYILYET 707

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
            ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+
Sbjct: 708 SSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYR 759

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ++P R L ++  ++  +E Q   L+ E+
Sbjct: 760 HKPLRSLAEVAQDILALEKQADGLISEI 787


>gi|134045682|ref|YP_001097168.1| N-6 DNA methylase [Methanococcus maripaludis C5]
 gi|132663307|gb|ABO34953.1| N-6 DNA methylase [Methanococcus maripaludis C5]
          Length = 587

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 192/491 (39%), Positives = 268/491 (54%), Gaps = 37/491 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A+ + G FK  ++GKVILP T+L+RL   L PT+ AV +         +    
Sbjct: 16  ANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKDAVLKTCEEIKDFEVKEGF 75

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
               AGY FYNTS ++  TL     +   N   +IA FSDN + I + F F   I+ L  
Sbjct: 76  LESAAGYPFYNTSPFTFETLLNDPDHIEANFRKFIAGFSDNIQDIIKHFKFEHIISDLVG 135

Query: 128 ---EKAGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              E+  L Y I + N     + PD +    M  I+E LIR+F    +E A    T RD+
Sbjct: 136 STPEEDKLFYVIQEFNKPSSYMGPDAISTADMGYIFEELIRKFSESYNEEAGAHFTARDI 195

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           ++L T LL+  D+  F  SP   +T YD   GT   LT     +    +  ++       
Sbjct: 196 IYLMTDLLVTEDE--FDGSP---KTCYDMAMGTSQMLTCLTERIQQLDNKIEVSVF---- 246

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  PET A+  A M+IR  ++D       N++ G TL  D F G  F YC+SNPPFG 
Sbjct: 247 GQEFNPETFAIAKADMIIRGGKAD-------NMRFGDTLINDQFKGYTFDYCISNPPFGV 299

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W+  K AV+KE+K  E GRFG GLPKISDG MLF ++  +KL+      GR AI+ + S
Sbjct: 300 DWKAQKKAVDKENKLAEKGRFGVGLPKISDGQMLFTLNGISKLK----DTGRLAIIHNGS 355

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S  K++ER GKVQ
Sbjct: 356 PLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNKSDERAGKVQ 415

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFG 474
           LI+A++++   R   G KR  ++ D R  I+  Y    +  +        S++ +   FG
Sbjct: 416 LIDASNMYVKRRKSIGNKRVDLSTDCREAIVKAYGEFSDKYYDYGEKSVESKVFNNEDFG 475

Query: 475 YRRIKVLRPLR 485
           Y +I V  PL+
Sbjct: 476 YYKITVESPLK 486



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           PDT+  + ENVP  E I++YF REV P+ P+A+ID       DK+   +GYEI F R FY
Sbjct: 501 PDTSKRDTENVPLTEDIEEYFKREVLPYNPEAWID-------DKKT-TIGYEIPFTRHFY 552

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +Y    K   +   +  +EA++   L+ +
Sbjct: 553 KYVAPEKSDMVAERICVIEAELTGSLKSL 581


>gi|260891565|ref|ZP_05902828.1| hypothetical protein GCWU000323_02780 [Leptotrichia hofstadii
           F0254]
 gi|260858673|gb|EEX73173.1| type I restriction-modification system specificity subunit
           [Leptotrichia hofstadii F0254]
          Length = 725

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 226/728 (31%), Positives = 361/728 (49%), Gaps = 88/728 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VI+P T++RR +  +E  ++ + E          D+
Sbjct: 13  LISFIWSVADDCLRDVYVRGKYRDVIIPMTVIRRFDAIIESKKTNIMEVKEMAETQGWDV 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTI 124
              +  A G  FYNTS + L  L     R NL    E Y+  FS+N K I + FDF++ +
Sbjct: 73  AKTLDTATGLPFYNTSNFCLKDLKYETNRQNLKRSFEEYLNGFSENIKEILQKFDFNNQL 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++  AG+L  + + F+  EL+                 + +  M  ++E +IR+F  E 
Sbjct: 133 TKMTDAGILGSVIEKFTSSELNLSPYDEKNSYGEVIRKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   +   
Sbjct: 193 NEEAGEHFTPRDVIELMADIAMYPVMDKIKDGT---YSIYDGACGTLGMGTVAEERLKAF 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS D  +G+
Sbjct: 250 AKENSKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDKTSGQ 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRFGPG---------LPKISDGSM 336
            F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG +
Sbjct: 305 HFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDRRFVRNYKEQDDFRMIPDVSDGQL 364

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP +
Sbjct: 365 LFLLNNISKMK-ETEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEKDLIEAIIQLPEN 423

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           +F+ T I TY+WILSNRK E+R+GK+QLINA+ + TS+R N GKK    ++D R+ IL  
Sbjct: 424 MFYNTGITTYIWILSNRKEEKRKGKIQLINASGIKTSLRKNMGKKNCEFSEDNRQFILKQ 483

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI----------------------LDKT 493
           Y++ E  ++S++     FGY ++ V RPLR + +                      +DK 
Sbjct: 484 YLNFEENEYSKIFSNDEFGYYKVVVERPLRQAVLCDANNIKEIEEELEKIGVLSGAIDKK 543

Query: 494 GLARLEADITWRKLSPLHQS----FWLDILKPMM--QQIYPYGWAESFVKESIKSNEAKT 547
            LA      T   +  L +S     +L++LK M   ++   Y   E    + +K  + K 
Sbjct: 544 VLAESFIKGTSSSMKELEKSENVNTYLEVLKLMKSDEEYLNYAAFEKAFNKHLKKKDIKG 603

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
             +  SK      ++    KD  A    D  G  + D+ L + E++P  +   I ++  +
Sbjct: 604 ASL--SKLASTGLLSRMIVKDEEAAIQKDSKGNVVADSELRDTESIPMTFEGGIDEFIKQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ-- 663
           EV P+  DA     F+DE   +I   GYEINF ++FY+ +    +++I   +K +E Q  
Sbjct: 662 EVLPYHADA-----FVDESKTQI---GYEINFTKYFYKAKELESVEEIVNRIKELERQSD 713

Query: 664 --IATLLE 669
             +A++LE
Sbjct: 714 GMMASILE 721


>gi|239828720|ref|YP_002951343.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239809013|gb|ACS26077.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 592

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 183/487 (37%), Positives = 273/487 (56%), Gaps = 33/487 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A+ L G +K   +G+VILP T+++R    L PTR  V E Y       +  E 
Sbjct: 18  ANLIWSIADSLRGLYKPHQYGEVILPMTVIKRFHDTLLPTREKVLETYEKVKHLEVK-EG 76

Query: 72  FVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           F++ A GY FYN S+++  +L     N   N  +Y+  FS+N + + ++FDF   + RL 
Sbjct: 77  FLQSASGYVFYNVSKFTFDSLLADPDNIEENFLAYLHGFSENVQDVLKNFDFEREVRRLA 136

Query: 129 KAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
               L+ + + F+  +  L PD +    M  I+E LI++F     E A    T RD+++L
Sbjct: 137 DNDKLFYVIQEFNSEKAYLGPDKITSTDMGYIFEELIKKFSESYDEEAGSHFTSRDIIYL 196

Query: 187 ATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
            T LL++ + D L  E  G+ +T+YD T GT   L+     +       ++       GQ
Sbjct: 197 MTDLLIEEEKDVLMNE--GIAKTVYDQTMGTSQMLSAMEERLKALDPEAEV----TVFGQ 250

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+  +T+A+  A  +IR    D       N++ G+TL++D F G  F YC+SNPPFG  W
Sbjct: 251 EINEQTYAIAKADTMIRGGNPD-------NMRLGNTLTEDQFEGYTFDYCISNPPFGVDW 303

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           + + + V+ EH+ GE GRFG GLPK +DG +LFL++  +KL+      GR AI+ + S L
Sbjct: 304 KSEYEKVKAEHEKGENGRFGVGLPKKNDGQLLFLLNGLSKLK----DTGRMAIIHNGSAL 359

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F+G AGSGESEIRR+++END +EAIV LP DLF+ T I TY+WIL+  K + R GKVQLI
Sbjct: 360 FSGDAGSGESEIRRYVIENDWLEAIVQLPADLFYNTGITTYIWILTKNKPKHRIGKVQLI 419

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFGYR 476
           +A++++   R N G KR  I +  R  I+  Y    N ++        S++ D   FGY 
Sbjct: 420 DASNMYEKRRKNIGNKRVDITEPCREMIVKAYREFLNKEYRMGERTVESKIFDNEDFGYY 479

Query: 477 RIKVLRP 483
           ++ V  P
Sbjct: 480 KVTVETP 486



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           NG+ +PD +  + E +P  E IQ+YF RE+ P  PDA+I        D+   ++GYEI F
Sbjct: 498 NGKPVPDKDKRDTEEIPLKEDIQEYFEREIKPFNPDAWI--------DENKTKIGYEIPF 549

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            R FY++QP  K +DI   ++ +E +I    E ++ E
Sbjct: 550 TRLFYKFQPPEKSEDIAVRIRKLEEEIVKSFESLSGE 586


>gi|293401125|ref|ZP_06645269.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305251|gb|EFE46496.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 675

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 225/697 (32%), Positives = 355/697 (50%), Gaps = 77/697 (11%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFGGS 65
           ++ +FIW  A+D   D +    +  VILP T++RRL+  LE T+ AV   +EK  A G +
Sbjct: 12  AIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEDTKPAVLAMKEKMDAAGIT 71

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFS 121
           N    +    AG +F N+S + L  L S   +  L    E+Y+  FS N + I E F F 
Sbjct: 72  N-QWPALCNAAGQAFCNSSPFLLKDLTSRAKKQTLKVDFEAYLDGFSPNVQEILEKFKFR 130

Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTV--------------PDRVMSNIYEHLIRR 165
           + I  +  A +L  + + F    I L P  V               +  M  ++E L+RR
Sbjct: 131 NQIDTMIDADILGAVIEKFISPTINLSPKPVYTDDTMKTIKLPALDNHGMGTVFEELVRR 190

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F    +E A +  TPRDVV L   L+  P     K++     + YD  CGTGG LT A +
Sbjct: 191 FNEANNEEAGEHWTPRDVVDLMADLIFIPIADQIKDA---TYSCYDGACGTGGMLTVAQD 247

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +            +   GQE++PET+A+C A ML   L+ D  +  +++I  GSTLS D
Sbjct: 248 RLMTLARRRGKDVSIHLFGQEVQPETYAICKADML---LKGDGEQ--AEHIAYGSTLSAD 302

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD-------KDAVEKE-HKNGELGRFGPGLPKISDGSML 337
               ++F + L+NPP+GK W+ D       KD ++   +   E G     +P+  DG +L
Sbjct: 303 GNASRQFDFMLANPPYGKSWKTDAEKMGGKKDILDSRFNAYLEDGTQLSMIPRTKDGQLL 362

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++  +K++     G R A V + S +F G AGSGES  RR+L+ENDL+EAI+ALP  +
Sbjct: 363 FLLNNVSKMKTDTPLGSRIAEVHNGSSIFTGDAGSGESNARRYLIENDLVEAIIALPDRM 422

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIY 456
           F+ T + T++W+LSN+K + R+GK+QLI+AT + T  ++  G K   ++ + R++I+ I+
Sbjct: 423 FYNTPLNTFVWVLSNKKEQRRKGKIQLIDATAMKTPLLKKLGDKGFELSPENRKEIIRIF 482

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +  +  +  R+ D   FG+  I V RPLR+    ++    ++ + I    L    +  + 
Sbjct: 483 MEMQESEICRVFDNDEFGHWAITVERPLRLRVYPER----KIPSGI----LKAAEEEQYY 534

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I++ + Q +    W  SF     K+ + K   +K  + FI         KD  A P+  
Sbjct: 535 SIIEKIKQNVDLSDWT-SFA----KATKLKAGVLKKIRPFIT-------EKDASAKPIA- 581

Query: 577 VNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
             GE  PD  L + E VP  Y   I+ +   EV  + PDAYI        D+    +GYE
Sbjct: 582 --GE--PDVELRDTEIVPLTYEGGIEAFLDNEVRTYSPDAYI--------DESKTTIGYE 629

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           I+FN++FY+ +  R+ + I  EL  +E     ++EE+
Sbjct: 630 ISFNKYFYKAKELRESETIVKELMTLEKSATEMMEEL 666


>gi|217979674|ref|YP_002363821.1| N-6 DNA methylase [Methylocella silvestris BL2]
 gi|217505050|gb|ACK52459.1| N-6 DNA methylase [Methylocella silvestris BL2]
          Length = 647

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 228/697 (32%), Positives = 343/697 (49%), Gaps = 110/697 (15%)

Query: 21  DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFGGSNIDLESFVKVAG 77
           DL+   K+ D   VILP  +LRRL+  LEPT++AV   ++     G +N D  +  + AG
Sbjct: 10  DLYVRGKYRD---VILPMMVLRRLDAVLEPTKAAVLSMKDNLDKAGITNQD-AALRQAAG 65

Query: 78  YSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
            +FYNTS + L  L +  +++ L    E+++  FS N + I ++F+F + + +L KA +L
Sbjct: 66  QAFYNTSRFKLRDLRNRASQSQLKADFEAFLDGFSPNVQEILDNFEFRNQLPKLSKADVL 125

Query: 134 YKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             + + F  S I L P  V             +  M  I+E L+RRF    +E A +  T
Sbjct: 126 GTLIEKFLDSSINLGPKPVLNGDGSVKHPGLDNHAMGTIFEELVRRFNEANNEEAGEHWT 185

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD V L   L+  P   +  +       LYD  CGTGG LT A   + +    H     
Sbjct: 186 PRDAVKLMAKLIFVP---IADQIQSGTYLLYDGACGTGGMLTVAEETLNELAEKHGKQVS 242

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRFHYCL 296
               GQE+  ET+A+  A +L++    +     + NI  G   STL+ D F  K F + L
Sbjct: 243 THLFGQEINGETYAIAKADLLLKGEGEE-----ADNIVGGPEWSTLANDAFPSKEFDFML 297

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-------------LPKISDGSMLFLMHLA 343
           SNPP+GK W+ D+     E   G+ G   P              + + SDG MLFL ++ 
Sbjct: 298 SNPPYGKSWKSDQ-----ERMGGKSGMRDPRFVIEHAGDAEYSLVTRSSDGQMLFLANML 352

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +K++     G R A V + S LF G AGSGES +RRW++END  EAIVALP ++F+ T I
Sbjct: 353 SKMKHNTPLGSRIAEVHNGSSLFTGDAGSGESNVRRWIIENDWCEAIVALPLNMFYNTGI 412

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462
           ATY+W+LSNRK   RRGKVQLI+AT  +  +R N GKK   + D    +IL  +++ +  
Sbjct: 413 ATYVWVLSNRKPGNRRGKVQLIDATAWFRPLRKNLGKKNCELADADIERILQAFIAFQPT 472

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-- 520
           + SR+ D   FGY ++ V RPLR   I             T R  +P       D  +  
Sbjct: 473 EQSRIFDNAEFGYSKVTVERPLRARGI------------DTTRAYAPKEIKALKDDGRTA 520

Query: 521 ----PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
               P++++I+  G  E+     +       L +   +  +                   
Sbjct: 521 EDGAPVIRRIHKPGKVEADPLRGLFP-----LTIDGKRCVV------------------- 556

Query: 577 VNGEWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
              E+ PD++L + E VP  E   I+ +  REV PH PDA+ID+            +GYE
Sbjct: 557 ---EYEPDSDLRDTETVPLKEPGGIEAFIRREVLPHAPDAWIDEAKT--------TIGYE 605

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ++F R+FY+ QP R L  I A++  +E +   L+ ++
Sbjct: 606 VSFTRYFYKPQPLRPLDAIRADILALERETDGLMADI 642


>gi|269123431|ref|YP_003306008.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112]
 gi|268314757|gb|ACZ01131.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112]
          Length = 725

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 219/720 (30%), Positives = 360/720 (50%), Gaps = 88/720 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP T++RR +  +EP ++ + +          D+
Sbjct: 13  LISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGWDV 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTI 124
              +  A G  FYNTS + L  L     R NL    E Y+  FS+N K I + FDF++ +
Sbjct: 73  TKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNNQV 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++  AG+L  + + F+  EL+                 + +  M  ++E +IR+F  E 
Sbjct: 133 TKMTDAGILGSVIEKFTSSELNLSPYDEKNSSGDIIKKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRD++ L   + + P   +  +      ++YD  CGT G  T A   +   
Sbjct: 193 NEEAGEHFTPRDLIELMADITMYP---IMDKIKNGTYSIYDGACGTLGMGTVAEERLKAF 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS D  +G+
Sbjct: 250 AKENDKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDRTSGQ 304

Query: 291 RFHYCLSNPPFGKKWEKD-------------KDAVEK----EHKNGELGRFGPGLPKISD 333
            F + LSNPP+GK W+ D             K+ +++     +K  +  R    +P +SD
Sbjct: 305 HFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNIIDRRFVRNYKEQDDFRM---IPDVSD 361

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ L
Sbjct: 362 GQLLFLLNNISKMK-ETEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQL 420

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+WILSNRK E R+GK+QLINA  + T++R N GKK    ++  R  I
Sbjct: 421 PENMFYNTGITTYIWILSNRKEERRKGKIQLINANGIKTALRKNMGKKNCEFSEADREFI 480

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI---------- 502
           L+ Y+  E  ++S++     FGY ++ V RPLR + + +   L  +E ++          
Sbjct: 481 LNQYLKFEENEYSKIFLNDEFGYYKVVVERPLRQAVLCNAENLKEIEEELKKIRAFSGKI 540

Query: 503 ------------TWRKLSPLHQS----FWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
                       T   +  L +S     +L++LK +M +   Y    +F K+  K  + K
Sbjct: 541 DKKILEDSFIKGTATSIKELEKSENIEAYLEVLK-LMNKEEKYLDYVAFEKDFNKHLKKK 599

Query: 547 TLKVKASKSFI-VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYF 603
            +K  +   F+    +     +D  A    D  G  I D +L + E++P  +   I+++ 
Sbjct: 600 NIKGASLSKFVSTGLLGNMIIRDESAVIQKDSKGNVIVDPDLRDTESIPMTFEGGIEEFI 659

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++DI + +K +E Q
Sbjct: 660 KKEVLPYHADA-----FVDESKTQI---GYEINFTKYFYKAKELESVEDIVSRIKELERQ 711


>gi|163754486|ref|ZP_02161608.1| restriction/modification methyltransferase [Kordia algicida OT-1]
 gi|161325427|gb|EDP96754.1| restriction/modification methyltransferase [Kordia algicida OT-1]
          Length = 737

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 281/510 (55%), Gaps = 47/510 (9%)

Query: 10  SLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            + +FIW  A+D L  DF    +  +ILPFT+LRRL+  L PT+  V + Y     + ID
Sbjct: 8   QIVSFIWSIADDVLRDDFVRGKYRDIILPFTVLRRLDALLVPTKEDVLKGYKFLKENKID 67

Query: 69  -LESFVKVAGYSFYNTSEYSLS--------------TLGSTNTRNNLESYIASFSDNAKA 113
            L      +GY F+NTS ++ S              T    N  +NLE Y+  FS+N + 
Sbjct: 68  DLSGLTHQSGYPFFNTSGFTFSNSSLFDSNHPYTALTNDPANIDSNLEEYLDGFSENIQQ 127

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYE 160
           I + F+    + +L++ GL   + +  +   I L P  + +             M  ++E
Sbjct: 128 IIDRFEIRKQLPKLKENGLTPLLIEKLASKEINLSPVEIKNTKGEVLPPLTNLGMGYVFE 187

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LIR+F  E +E A +  TPR+++ L T L+  P     K +     ++YD  CG+GG L
Sbjct: 188 ELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQ---YSIYDSACGSGGML 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T+A  +      +     +   +GQE+ PET AVC + MLI+  E D       +I  GS
Sbjct: 245 TEAEKYAKRITKNKTSFSL---YGQEVNPETWAVCNSDMLIKG-EKD------YHIAYGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGEL---GRFGPGLPKISDGSM 336
           TLS D F  K F + LSNPP+GK W+KD+D++  E  K  EL    RF  GLPKISDG +
Sbjct: 295 TLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQTGLPKISDGQL 354

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL ++ +K++     G R A V + S LF G AG GESEIRR+L+E+DL+E IVALP  
Sbjct: 355 LFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDLVECIVALPEK 414

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDI 455
           +F+ T I TY+WILSNRK + R+GK+QLINA +L T + RN G+K   +     +QI D+
Sbjct: 415 IFYNTGIPTYIWILSNRKEKRRQGKIQLINALELSTPLRRNLGEKNCEMQPSHIKQIEDL 474

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           Y++ +    S++ D   FGY  + + RPLR
Sbjct: 475 YLNFKETNISKVFDNEDFGYYDVTIERPLR 504



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 17/133 (12%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE-----WIPDTNLTEYENVPYLESIQ 600
           KTL  K S +     + A   KD  A+PV     +     +  D++L + E VP  E+I+
Sbjct: 612 KTLSYKVSATNKKKVLLAVSWKDEEAEPVIKKKAKDGTIIYEADSDLRDTEIVPLNENIE 671

Query: 601 DYFVREVSPHVPDAYI--DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           DYF REV P+VPDA+I  DKI            GY I+F R+FY Y P + L+ I  E+ 
Sbjct: 672 DYFNREVIPYVPDAWINYDKI----------TKGYMISFTRYFYNYSPPKDLELIKQEIL 721

Query: 659 GVEAQIATLLEEM 671
            +E +   +LEE+
Sbjct: 722 DLEKETEGILEEI 734


>gi|188535438|ref|YP_001909235.1| type I restriction-modification system, methyltransferase subunit
           [Erwinia tasmaniensis Et1/99]
 gi|188030480|emb|CAO98374.1| type I restriction-modification system, methyltransferase subunit
           [Erwinia tasmaniensis Et1/99]
          Length = 793

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 241/801 (30%), Positives = 384/801 (47%), Gaps = 166/801 (20%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP + AV    R +      +
Sbjct: 9   LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVRFQKEELQAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D    +  +GY FYNTS+++L++L  T T +      N E Y+  FSDN K I   F+
Sbjct: 69  ELDDAPLMAASGYVFYNTSKWTLNSLFKTATNSQQILLANFEEYLLGFSDNVKEIVACFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSN-----IYEHLIRRF 166
             + I  +    +L  + + F    ++        PD      +SN     ++E LIR+F
Sbjct: 129 LQAQIRHMAAKQVLLDVVEKFVSPYINLTHKAVDDPDGYSMPALSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIDLMTHLVFDP----VKDKLPLTMTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +       K P     +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS
Sbjct: 245 I-----EAKYPSSNRDIYLYGKEINDETYAICKSDMMIKG--NNP-----ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFGP-----GLPKI 331
            D F  +RF + LSNPP+GK W  ++       D ++   K      FG        P+ 
Sbjct: 293 TDEFAAQRFDFMLSNPPYGKSWATEQKYIKDGGDVIDPRFKVKLRDYFGKEETVDATPRS 352

Query: 332 SDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END+++A
Sbjct: 353 SDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLDA 412

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           IV LP +LF+ T I TY+W+L+N K+++R+GKVQLI+A+ L+  +R N G K      + 
Sbjct: 413 IVQLPNNLFYNTGITTYIWLLNNNKSQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPEH 472

Query: 449 RRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKV--------------LR 482
             +I   Y++               G  S++     FGY ++ +              +R
Sbjct: 473 IAEIAQTYLACTGAERALDANHDAVGIASKVFSNDDFGYYKVTIERPDRRKARFSREAIR 532

Query: 483 PLR--------MSFILDKTG--------LARLEADIT-WR-----KLSPLHQSFWLDILK 520
           PLR        M+++  + G        LA +E D   W       L+   +S  LD+  
Sbjct: 533 PLRFDKQLAEVMAWLYAEHGDKVYEKGFLASVEKDTQGWCAERDISLNTKARSKLLDVKN 592

Query: 521 PMMQQIYPYGWAESFVKESIKSNE--------------AKTLKVKASKSFIVAFINAFGR 566
            +  Q   Y  AE  +  +I   E               K  K+K S +   A +NA   
Sbjct: 593 WLSLQTV-YHCAERLMA-TIGGEEFDDFNRFKAQVEQVLKAEKIKLSAAEKNAILNAVSW 650

Query: 567 KDPRADPVTD----VNGEWIPD--------------------------------TNLTEY 590
            D  A  V +    +NG+ + D                                 +L + 
Sbjct: 651 YDESAAKVINKTVKLNGDKLQDLLERLECEAADLPDFGFYPSGKKDEYITYDSSADLRDT 710

Query: 591 ENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
           E++P  +SI  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY+++P R L
Sbjct: 711 ESIPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYRHKPLRSL 762

Query: 651 QDIDAELKGVEAQIATLLEEM 671
           +++  ++  +E Q   L+ ++
Sbjct: 763 EEVAQDIIKLEQQSEGLIAQI 783


>gi|295135946|ref|YP_003586622.1| DNA methylase HsdM [Zunongwangia profunda SM-A87]
 gi|294983961|gb|ADF54426.1| putative DNA methylase HsdM [Zunongwangia profunda SM-A87]
          Length = 784

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 239/793 (30%), Positives = 378/793 (47%), Gaps = 145/793 (18%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYL 60
            S + L  FIW  A+D   D +    +  VILP  +LRRL+  LEP++  V +    + +
Sbjct: 4   NSHSKLIAFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKKEVMDEVQFQTV 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAI 114
             G + ++ E     AGY FYNTS+++L  L  T + N      N E YI  FSDN K I
Sbjct: 64  EAGFTELESEGLKTAAGYEFYNTSKWTLQLLKDTASNNQSILLANFEDYILGFSDNVKEI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSN-----IYEH 161
              F+    I  +    +L  + + F+   ++        PD      +SN     ++E 
Sbjct: 124 ISKFNLVRQIKHMATKDVLLDVLEKFTSPRINLTPFEKEDPDGYKLPALSNLGMGYVFEE 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIR+F  E +E A +  TPR+V+ L T L+ +P     K     + T+YDP CG+GG LT
Sbjct: 184 LIRKFNEENNEEAGEHFTPREVIELMTHLVFEP----VKHQLPPVMTIYDPACGSGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++ N + D     +    +   G+E+  ET+A+C + M+I+   +DP+     NI+ GST
Sbjct: 240 ESQNFIKDEAGAIQAKGDVYLFGKEINDETYAICKSDMMIKG--NDPQ-----NIRLGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           LS D F+ K F + LSNPP+GK W  ++  + K+ K+    RF                +
Sbjct: 293 LSTDEFSRKNFDFMLSNPPYGKSWASEQKYI-KDGKDIIDPRFTIQLSNYWQETDTEKAI 351

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+L+ENDL
Sbjct: 352 PRSSDGQLLFLMEMVSKMKNLKQSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIENDL 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN KT+ER+GKVQLI+A  L+  +R N G+K     
Sbjct: 412 LEAIVQLPNNLFYNTGITTYIWLLSNNKTKERQGKVQLIDAQPLYQKLRKNLGQKNCEFT 471

Query: 446 DDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRP--LRMSFILD----- 491
            +   +I   +++ E       +   S++ +   FGY ++ + RP  LR  F L+     
Sbjct: 472 PEHITEITQTFLNSEAREREEDDQLASKIFNNTDFGYYKVTIERPKRLRSQFTLEAIESL 531

Query: 492 ----------------------------KTGL----------------ARLEADITWRKL 507
                                       KT +                A+L A  TW   
Sbjct: 532 RYYSQLQEPMEYAYKTFGKKVYTELPSIKTEILNWCEANDISLSSKKKAQLTAKKTWE-- 589

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA-KTLKVKASKSFIVAFINAFGR 566
                 F +D    + + I    + + F   S + N+A K L++K S +   A ++A   
Sbjct: 590 ---DAKFLVDTATKLYEAIGDAVFMD-FNHFSKQVNKALKKLEIKLSNAQKKAILDAVSV 645

Query: 567 KDPRADPVTD----VNGE--------------------WIPDTNLTEYENVPYLESIQDY 602
            DP A+ V      + GE                    + P  N   Y        ++DY
Sbjct: 646 YDPEAEKVIKTTKILKGEKLENLCAHLDCTPDQLSHFGYFPSGNKGTYTIYESESDLRDY 705

Query: 603 FVREVSPHVPDAYIDKI--FIDEK--DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
               +   V D ++ ++   ++E   D +  ++GYEI+FN++FYQ++  R L +ID +++
Sbjct: 706 ENVPLDETVYDYFLREVSTHVEEAWIDLDKTKIGYEISFNKYFYQHKALRPLDEIDKDIR 765

Query: 659 GVEAQIATLLEEM 671
            +E +   L+ ++
Sbjct: 766 ELETKSEGLIMDI 778


>gi|257440743|ref|ZP_05616498.1| type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257196804|gb|EEU95088.1| type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 586

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 287/552 (51%), Gaps = 51/552 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T    + A  A  IW  A+ L G FK  ++G VILP T+++R    L PT  AV + Y 
Sbjct: 6   ITAVGANIAEKAAMIWNVADMLRGPFKPHEYGLVILPMTVVKRFHDCLLPTHQAVLDTYE 65

Query: 61  AFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFED 117
                 + ++ F+ K +GY FYNTS ++  TL +   N  +N   Y++ FS NA+ +   
Sbjct: 66  KVKKLQV-IDGFLQKASGYQFYNTSRFTFETLLADPDNIESNFRDYLSGFSANAQDVLAK 124

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           FDF + I R+ ++  LY + K F   +  L PD +       I+E L+RRF     E A 
Sbjct: 125 FDFDNIIKRMVESNTLYLVIKEFGSGKGYLGPDKISAVDCGYIFEDLVRRFSESFGEEAG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              T RD+++L T LLL   D    ++  M  T+YD   GT   L+     + +  S  +
Sbjct: 185 AHFTSRDIIYLMTDLLLSEADL---DTSSM--TVYDMAMGTSQMLSCMEERIHELNSDIE 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQE  P T A+  A M+IR    DP      N++ G TLS+D F G  F Y 
Sbjct: 240 V----TCFGQEFNPSTFAIAKADMMIRG--GDP-----NNMRFGDTLSEDQFPGFTFQYI 288

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH----LANKLELPPN 351
           +SNPPFG  W++++ AVE E   GE+GRF PGLPKISDG  LF+++    LANK      
Sbjct: 289 ISNPPFGIDWKREQKAVEAEAARGEMGRFAPGLPKISDGQQLFVLNGLAKLANK------ 342

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+ AI+ + SPLF+G AGSG S IR+++LEND ++ I+ L TD+F  T I+TY+W+LS
Sbjct: 343 --GKMAIIQNGSPLFSGDAGSGPSNIRQYILENDWLDCIIQLSTDMFMNTGISTYIWVLS 400

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF------ 464
             K   R GKVQLI+A+  +   R   G KR  I D  R  I+  Y    NGK       
Sbjct: 401 KDKPAHRAGKVQLIDASHCFEPRRKSIGTKRNDITDACRELIVTAYGEFANGKVYGDKNG 460

Query: 465 ----SRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
               S++ +   FGY +I V RP R     IL K G    +  +   +  PL Q    DI
Sbjct: 461 IYCESKVFESVEFGYNKIVVERPQRDEAGNILLKRGKPVPDTSLRDTENVPLVQ----DI 516

Query: 519 LKPMMQQIYPYG 530
                +++ PY 
Sbjct: 517 DAYFAREVLPYA 528



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 8/93 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G+ +PDT+L + ENVP ++ I  YF REV P+ PDA+I        D    +VGYEI   
Sbjct: 496 GKPVPDTSLRDTENVPLVQDIDAYFAREVLPYAPDAWI--------DHSKTKVGYEIPMT 547

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           R+FY+YQ    ++DI A +  +E  I+  L E+
Sbjct: 548 RYFYEYQAPEAVEDIVARITALEQDISAGLAEL 580


>gi|259048037|ref|ZP_05738438.1| HsdM protein [Granulicatella adiacens ATCC 49175]
 gi|259035327|gb|EEW36582.1| HsdM protein [Granulicatella adiacens ATCC 49175]
          Length = 725

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 222/733 (30%), Positives = 365/733 (49%), Gaps = 98/733 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP T++RR +  +EP ++ + +          D+
Sbjct: 13  LISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGWDV 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTI 124
              +  A G  FYNTS + L  L     R NL    E Y+  FS+N K I + FDF++ +
Sbjct: 73  TKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENIKEILQKFDFNNQL 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++ +AG+L  + + F+  EL+                 + +  M  ++E +IR+F  E 
Sbjct: 133 NKMTEAGILGSVIEKFTSSELNLSPYNEINSKGKIIKKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDV+ L   + + P   +  +      ++YD  CGT G  T A   + + 
Sbjct: 193 NEEAGEHFTPRDVIELMADIAIFP---IMNKIMDGTYSIYDAACGTLGMGTVAEERLKEL 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K    +  +GQE+  ET+A+  A +LI+  ++D     S  +  GST+S D  +G+
Sbjct: 250 AQKDKKNVSIHLYGQEVSAETYAIAKADLLIKGGDTD-----SSQVYYGSTISDDKTSGQ 304

Query: 291 RFHYCLSNPPFGKKWE---------KDKDAVE--------KEHKNGELGRFGPGLPKISD 333
            F + LSNPP+GK W+          DKD  +        + +K  +  R    +P +SD
Sbjct: 305 HFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDIRFVRNYKEQDEFRM---IPDVSD 361

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ +
Sbjct: 362 GQLLFLLNNISKMK-NTEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQM 420

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+WILSNRK E R+GK+QLINA+ + T++R N GKK    + D R  I
Sbjct: 421 PENMFYNTGITTYIWILSNRKEERRKGKIQLINASGVKTALRKNMGKKNCEFSKDDREFI 480

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI---------- 502
           L+ Y++ E  ++S++     FGY ++ V RPLR + + ++  +  +E ++          
Sbjct: 481 LNQYLNFEENEYSKIFSNDEFGYYKVIVERPLRQAVVCNEKNIKEIEDELNKIGVFSGKI 540

Query: 503 ------------TWRKLSPLHQS----FWLDILKPMM--QQIYPY-GWAESFVKESIKSN 543
                       T   +  L ++     +L+ LK M   ++   Y  + + F K   K N
Sbjct: 541 DKKVLEDSFIKRTASSIKELEKTENVEAYLETLKLMKSDERYLDYVAFEKDFNKHLKKRN 600

Query: 544 -EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQ 600
            +  +L    S   +   I     +D  A    D  G  I D NL + E +P  +   I+
Sbjct: 601 VKGASLNKLVSTGLLANMI----IRDESAVIQKDSKGNVIVDPNLKDTETIPRTFEGGIE 656

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           ++  +EV P+  DA     F+DE   +I   GYEINF ++FY+ Q    +++I   +K +
Sbjct: 657 EFIKQEVLPYHVDA-----FVDESKTQI---GYEINFTKYFYKAQELESVEEIVDRIKEL 708

Query: 661 EAQ----IATLLE 669
           E Q    +A++LE
Sbjct: 709 ERQSDGMMASILE 721


>gi|68248716|ref|YP_247828.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|68056915|gb|AAX87168.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
          Length = 790

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 247/807 (30%), Positives = 380/807 (47%), Gaps = 174/807 (21%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + +K++ P +   G R A V + S LF G AGSGES IRR ++E DL+
Sbjct: 355 RSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFVP 474

Query: 447 DQRRQILDIYV-----SREN-------GKFSRMLDYRTFGYRRIKV-------------- 480
           +   +I   Y+     +RE        G  S++ D + FGY ++ +              
Sbjct: 475 EHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAEN 534

Query: 481 LRPLR--------MSFILDKTG--------LARLEADIT--------------------- 503
           + PLR        M ++  + G        LA+ E +IT                     
Sbjct: 535 ISPLRFDKALFEPMQYLYRQYGEQIYNAGFLAQTEQEITAWCEAQGIALNNKNKTKLLDV 594

Query: 504 --WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE----------------- 544
             W K + L Q+    +     QQ   +   +  V+  +K+ +                 
Sbjct: 595 KTWEKAAALFQTASTLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSW 654

Query: 545 ---------AKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI---PD 584
                    AKTLK+K ++      ++A   R   +AD + D         GE+I     
Sbjct: 655 YDENSAKVIAKTLKLKPNE------LDALCQRYQCQADELADFGYYATGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|52549663|gb|AAU83512.1| type I site-specific restriction-modification system methylation
           subunit [uncultured archaeon GZfos29E12]
          Length = 455

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/481 (38%), Positives = 274/481 (56%), Gaps = 50/481 (10%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CGTGG LT   + +        +    V  GQE+ PE +A+C A ML++  E+D 
Sbjct: 1   MYDPACGTGGMLTSCEDFIMSINKEVDV----VLFGQEVNPEIYAICKADMLMKG-END- 54

Query: 269 RRDLSKNIQQG-STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                KNI+   STLSKD F   +F + +SNPP+G+KWE+D DAV+ E + G  GRFG G
Sbjct: 55  -----KNIRGPFSTLSKDQFHDDKFDFIISNPPYGRKWEQDADAVKDEAERGFGGRFGAG 109

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP+I+DG +LFL H+ +K++       R A++ + SPLF G AG GES+IR+W++E+D +
Sbjct: 110 LPRINDGQLLFLQHMISKMK--SKEKSRVAVITNGSPLFTGDAGQGESDIRKWMIESDFV 167

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIND 446
           EAI+ALP  LFF T I TY+W+L+N K  ER GK+QLI+AT  +  +R   G KR  ++ 
Sbjct: 168 EAIIALPDQLFFNTGIHTYIWVLTNVKPVERVGKIQLIDATSFFKKMRKSLGNKRNYLSA 227

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           D  ++I+++Y   E  K+ ++ D   FGY ++ V RPL++++ + +     L +   +RK
Sbjct: 228 DDIKEIVELYDDFEENKYCKIFDNEVFGYTKVIVERPLQLNYQVAEERRENLYSIPVFRK 287

Query: 507 LSPLHQS-----------------FWLDILKPMMQQIYPYGWA--ESFVKESIKSNEAKT 547
           L+   +                    ++ LK +    Y   W   E  VKE++K      
Sbjct: 288 LAESKKKDPELKLKEEEEGKKKQEEIINNLKKIGNHSYK-NWDEFEKKVKEALKG----- 341

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
                S +FI   I A    D  AD V D  G  +PD NL + E +P  + I+ YF REV
Sbjct: 342 --FDLSPNFIKNIILALSEHDDIADYVLDKKGNKLPDPNLRDSEKIPLKQDIEKYFDREV 399

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            P+ PDA +D+    +KDK    VGYEINF ++FY Y+P R L++I+ ++K V  +I  L
Sbjct: 400 KPYYPDALMDR----KKDK----VGYEINFTKYFYVYKPPRPLEEIEKDIKEVIEEIQEL 451

Query: 668 L 668
            
Sbjct: 452 F 452


>gi|256845105|ref|ZP_05550563.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294785607|ref|ZP_06750895.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
 gi|256718664|gb|EEU32219.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294487321|gb|EFG34683.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
          Length = 725

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 217/721 (30%), Positives = 360/721 (49%), Gaps = 91/721 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           L +FIW  A+D   D +    +  VILP T++ R +  ++  ++ + +  ++    G NI
Sbjct: 13  LVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGWNI 72

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGS-TNTRN---NLESYIASFSDNAKAIFEDFDFSST 123
             ++        FYN S++ L  L S TN++N   N E Y+  FS+N K I E F+F++ 
Sbjct: 73  H-KTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNNQ 131

Query: 124 IARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSE 169
           + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  E
Sbjct: 132 LIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNEE 191

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   + + P   +  +      ++YD  CGT G  T A   +  
Sbjct: 192 NNEEAGEHFTPRDVVELMADIAVVP---VMNKIKNGTYSIYDGACGTFGMATIAEERLQT 248

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +G
Sbjct: 249 LAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTSG 303

Query: 290 KRFHYCLSNPPFGKKWEKD-------------KDAVEK----EHKNGELGRFGPGLPKIS 332
           + F + LSNPP+GK W+ D             K+ ++K     +K  E  R    +P +S
Sbjct: 304 EHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRM---IPDVS 360

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ 
Sbjct: 361 DGQLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQ 419

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ 
Sbjct: 420 LPENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKI 479

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI------TWR 505
           ILD Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++      +  
Sbjct: 480 ILDTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKI 539

Query: 506 KLSPLHQSF-------------------WLDILKPMMQ--QIYPYGWAESFVKESIKSNE 544
             + L ++F                   +L++LK M +  +   +   E    + +K  E
Sbjct: 540 NKNNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYE 599

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDY 602
            K   V  +K      +     +D  A    D  G  + D  L + E VP  Y   I+++
Sbjct: 600 LKA--VSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEF 657

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++ I A +K +E 
Sbjct: 658 IKKEVLPYHDDA-----FVDESKTQI---GYEINFTKYFYKAKELESVETIVARIKELEK 709

Query: 663 Q 663
           +
Sbjct: 710 E 710


>gi|296328650|ref|ZP_06871167.1| type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154249|gb|EFG95050.1| type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 725

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 218/719 (30%), Positives = 357/719 (49%), Gaps = 87/719 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP T++ R +  ++  ++ + +       S  D+
Sbjct: 13  LVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGWDI 72

Query: 70  ESFVKVA-GYSFYNTSEYSLSTLGS-TNTRN---NLESYIASFSDNAKAIFEDFDFSSTI 124
              +  +    FYN S++ L  L S TN++N   N E Y+  FS+N K I E F+F++ +
Sbjct: 73  HKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNNQL 132

Query: 125 ARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEV 170
            ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  E 
Sbjct: 133 TKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNEEN 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDVV L   + + P   +  +      ++YD  CGT G  T A   +   
Sbjct: 193 NEEAGEHFTPRDVVELMADIAVVP---VMNKIKNGTYSIYDGACGTFGMATIAEERLQTL 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +G+
Sbjct: 250 AKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTSGE 304

Query: 291 RFHYCLSNPPFGKKWEKD-------------KDAVEK----EHKNGELGRFGPGLPKISD 333
            F + LSNPP+GK W+ D             K+ ++K     +K  E  R    LP +SD
Sbjct: 305 HFDFMLSNPPYGKTWKTDLAVLGVGSDKDLKKNIIDKRFVTSYKEQEDFRM---LPDVSD 361

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ L
Sbjct: 362 GQLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQL 420

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+WILSNRK E R+GK+QLINA++L T +R N GKK    + + R+ I
Sbjct: 421 PENMFYNTGITTYIWILSNRKEERRKGKIQLINASELKTPLRKNLGKKNCEFSKENRKII 480

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI------TWRK 506
           LD Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++      +   
Sbjct: 481 LDTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELENIGFNSKIN 540

Query: 507 LSPLHQSF-------------------WLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
            + L  +F                   +L++LK M +    Y   E F K   K  +   
Sbjct: 541 KANLEGTFVKNSATVVKELEKTDNILAYLELLKDMKKD-DKYLDFEEFEKLFNKKLKKYG 599

Query: 548 LKVKASKSFI-VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFV 604
           LK  +   FI    +     +D  A    D  G  + D  L + E VP  Y   I+++  
Sbjct: 600 LKAASLSKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIK 659

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
           +EV P+  DA++D+           ++GYEINF ++FY+ +    ++ I A +K +E +
Sbjct: 660 KEVLPYHNDAFVDETKT--------QIGYEINFTKYFYKAKELENVETIVARIKELEKE 710


>gi|34762433|ref|ZP_00143433.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887901|gb|EAA24969.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 722

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 217/721 (30%), Positives = 360/721 (49%), Gaps = 91/721 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           L +FIW  A+D   D +    +  VILP T++ R +  ++  ++ + +  ++    G NI
Sbjct: 10  LVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGWNI 69

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGS-TNTRN---NLESYIASFSDNAKAIFEDFDFSST 123
             ++        FYN S++ L  L S TN++N   N E Y+  FS+N K I E F+F++ 
Sbjct: 70  H-KTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNNQ 128

Query: 124 IARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSE 169
           + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  E
Sbjct: 129 LTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNEE 188

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   + + P   +  +      ++YD  CGT G  T A   +  
Sbjct: 189 NNEEAGEHFTPRDVVELMADIAVVP---VMNKIKNGTYSIYDGACGTFGMATIAEERLQT 245

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +G
Sbjct: 246 LAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTSG 300

Query: 290 KRFHYCLSNPPFGKKWEKD-------------KDAVEK----EHKNGELGRFGPGLPKIS 332
           + F + LSNPP+GK W+ D             K+ ++K     +K  E  R    +P +S
Sbjct: 301 EHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRM---IPDVS 357

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ 
Sbjct: 358 DGQLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQ 416

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ 
Sbjct: 417 LPENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKI 476

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI------TWR 505
           ILD Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++      +  
Sbjct: 477 ILDTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKI 536

Query: 506 KLSPLHQSF-------------------WLDILKPMMQ--QIYPYGWAESFVKESIKSNE 544
             + L ++F                   +L++LK M +  +   +   E    + +K  E
Sbjct: 537 NKNNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYE 596

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDY 602
            K   V  +K      +     +D  A    D  G  + D  L + E VP  Y   I+++
Sbjct: 597 LKA--VSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGDIEEF 654

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++ I A +K +E 
Sbjct: 655 IKKEVLPYHDDA-----FVDESKTQI---GYEINFTKYFYKAKELESVETIVARIKELEK 706

Query: 663 Q 663
           +
Sbjct: 707 E 707


>gi|237741777|ref|ZP_04572258.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
 gi|229429425|gb|EEO39637.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
          Length = 722

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 217/721 (30%), Positives = 360/721 (49%), Gaps = 91/721 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           L +FIW  A+D   D +    +  VILP T++ R +  ++  ++ + +  ++    G NI
Sbjct: 10  LVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGWNI 69

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGS-TNTRN---NLESYIASFSDNAKAIFEDFDFSST 123
             ++        FYN S++ L  L S TN++N   N E Y+  FS+N K I E F+F++ 
Sbjct: 70  H-KTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNNQ 128

Query: 124 IARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGSE 169
           + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  E
Sbjct: 129 LIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNEE 188

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   + + P   +  +      ++YD  CGT G  T A   +  
Sbjct: 189 NNEEAGEHFTPRDVVELMADIAVVP---VMNKIKNGTYSIYDGACGTFGMATIAEERLQT 245

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +G
Sbjct: 246 LAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTSG 300

Query: 290 KRFHYCLSNPPFGKKWEKD-------------KDAVEK----EHKNGELGRFGPGLPKIS 332
           + F + LSNPP+GK W+ D             K+ ++K     +K  E  R    +P +S
Sbjct: 301 EHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRM---IPDVS 357

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ 
Sbjct: 358 DGQLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQ 416

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ 
Sbjct: 417 LPENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKI 476

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI------TWR 505
           ILD Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++      +  
Sbjct: 477 ILDTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKI 536

Query: 506 KLSPLHQSF-------------------WLDILKPMMQ--QIYPYGWAESFVKESIKSNE 544
             + L ++F                   +L++LK M +  +   +   E    + +K  E
Sbjct: 537 NKNNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYE 596

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDY 602
            K   V  +K      +     +D  A    D  G  + D  L + E VP  Y   I+++
Sbjct: 597 LKA--VSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEF 654

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             +EV P+  DA     F+DE   +I   GYEINF ++FY+ +    ++ I A +K +E 
Sbjct: 655 IKKEVLPYHDDA-----FVDESKTQI---GYEINFTKYFYKAKELESVETIVARIKELEK 706

Query: 663 Q 663
           +
Sbjct: 707 E 707


>gi|325297665|ref|YP_004257582.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
 gi|324317218|gb|ADY35109.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
          Length = 772

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 233/799 (29%), Positives = 373/799 (46%), Gaps = 162/799 (20%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            S + +   IW  A+D+  D F    +  VILP  +LRRL+  LEPT+  V E+    G 
Sbjct: 3   SSYSQIVALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKEDVEEEIKESGV 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDF 118
            NID      +   S++NTS+++L+ L S  + NN         Y+  +S+N + +  +F
Sbjct: 63  DNIDEGVLKDITRLSYFNTSKWTLNRLKSQASDNNDILYDNFVEYLNGYSENVRDVLRNF 122

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSNI-----YEHLIRR 165
           ++ +   +L     L  I +  +   ++        PD +P   ++N+     +E L+RR
Sbjct: 123 EYYTKARKLADNDRLLSIIERITDPRINLTDKNTIDPDGLPLPALTNVGMGTVFEELLRR 182

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E +E A +  TPRD + L   L+ +P     KE+   I TLYDP CG+GG LT++  
Sbjct: 183 FNEENNEEAGEHFTPRDAISLLAHLVFEP----VKENLPKIITLYDPACGSGGMLTESRE 238

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ D G       +    G E+ PET+A+C + ++I+ +  DP       I  G+T++ +
Sbjct: 239 YLLDLGVRSAAIQL---SGTEINPETYAICKSDLIIKGV--DP-----SGIHWGNTITDN 288

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PKIS 332
            F+ K F Y ++NPP+GK W++DK  +  E    +  RF   L             P+ S
Sbjct: 289 SFSDKSFGYMITNPPYGKSWKEDKKKIYHEKMLLD-HRFELTLTNYVGEEEVLDSTPRTS 347

Query: 333 DGSMLFLMHLANK---LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           DG +LFL+   +K   LE  P G  R A + + S LF G AGSGES IRR+L+E DL+EA
Sbjct: 348 DGQLLFLLEEVDKMKPLEFQPQGS-RIASIHNGSSLFTGDAGSGESNIRRYLIEKDLVEA 406

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP ++F+ T I+TY+W+L+N+K + R+GKVQLI+A+  +  +R     R    +  R
Sbjct: 407 IIQLPNNIFYNTGISTYVWMLTNKKKDNRKGKVQLIDASQAFEKLRKNQGSRNCTIEPYR 466

Query: 450 RQILDIYV-------SRENGKFSRMLDYRTFGYRRIKVLRPLRM-----SFILD------ 491
             IL +Y        + E    S++ D   F Y  + + RPLR+     S  +D      
Sbjct: 467 TDILRVYTDFVEQEANEELKVGSKIFDDDDFRYYNVTIERPLRLRCQFNSLKIDEMLYDS 526

Query: 492 ----------------------------KTGLARLEADITWRKLSPL-HQSFWLD----- 517
                                       K  L   +  IT +KL+ L     W D     
Sbjct: 527 SDIEVSKWLYNTYKDRVFSGLDSEIPTIKEYLNDQDIKITDKKLNKLISAKAWKDRQRLM 586

Query: 518 -----ILKPMMQQIY-PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
                ++K M   +Y  Y    + V  +     AK LK++ S + +     A    D +A
Sbjct: 587 IAAKVLMKDMGTDVYMDYNLFSAKVNAT-----AKVLKLETSAAELKTICRAMSVTDSKA 641

Query: 572 DPVT----DVNGE---------WIPDTNLTEY----------------------ENVPYL 596
            PV      VN +          +P+  L++Y                      E +P  
Sbjct: 642 TPVVKKEHKVNSKDVVMLLETYGVPEEKLSDYGYHSVKKGMYVEFESDSELRDSEKIPVK 701

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           E I DYF REV P+V DA+I        +    ++G EI+FN++FY+  P R L++ + +
Sbjct: 702 EDIYDYFQREVRPYVEDAWI--------NLPQTKIGCEISFNKYFYKPTPLRSLEENERD 753

Query: 657 LKGVEAQ----IATLLEEM 671
           +  ++ Q    I +L ++M
Sbjct: 754 IIALDEQSQGFIKSLFKQM 772


>gi|288928858|ref|ZP_06422704.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329842|gb|EFC68427.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 682

 Score =  296 bits (759), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 224/712 (31%), Positives = 345/712 (48%), Gaps = 90/712 (12%)

Query: 10  SLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +L  FIW  A D L   F   D+ K+ILP  +LRRL+  LEPT   V +         +D
Sbjct: 8   TLFTFIWNIANDVLVQAFNKGDYKKIILPMMVLRRLDILLEPTHQQVLQLKQQLTEQGVD 67

Query: 69  LES----FVKVAGYSFYNTSEYSLSTL-GSTNT---RNNLESYIASFSDNAKAIFEDFDF 120
                   ++  G ++ NTS +++ TL G TN    + N   Y+  FS + + I E F  
Sbjct: 68  ETQQESMLIRRTGLAYCNTSRFTMKTLRGETNPVRLKQNFLEYLDGFSKDVQDIIEKFKL 127

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRF 166
              +  L   G L +I + F+  E++    P              +  M  ++E L+R+F
Sbjct: 128 KQQVDNLSDTGRLGRIIEKFTDAEINLGKDPVLDAEGNERLPGVDNHTMGTLFEQLLRKF 187

Query: 167 --GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
              + V+E  E F TPRD V L   + + P     +       T+YD  CGTGG L+ A 
Sbjct: 188 NEANSVTEAGEHF-TPRDYVALLADIAVLPVANKLRNG---TYTIYDGACGTGGILSIAE 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----G 279
             +AD     +    +  +GQE++PET+A C A +++  + ++    L+  +++     G
Sbjct: 244 QRIADIAKEQRKRIKISLYGQEMQPETYATCKADLMLSSI-TNSFAYLNAGVRRERFFCG 302

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA-----VEKEHKNGELGRFGPG------- 327
           ST+S D   G +F +C+SNPPFG  W+ D  A      EK+H          G       
Sbjct: 303 STISNDGHPGMKFDFCISNPPFGTPWKTDLQAWGLKDNEKQHITDPRFVLPQGYDPHNGL 362

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             +P + D  MLFL +  ++++     G R   V + S LF G AG GES +RR ++END
Sbjct: 363 RFVPDVGDSQMLFLANNISRMKNDTELGTRIVEVHNGSSLFTGNAGGGESNLRRHIIEND 422

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
            +EAI+A+P   F+ T I T++W+++NRK   R GKVQLI+ATD+ T +R N G+K    
Sbjct: 423 WLEAIIAMPEKDFYNTGIGTFIWVVTNRKEPRRAGKVQLIDATDIKTPLRKNLGEKNCET 482

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           N+  R+QI+ +    E    S++     FGY  IKV RPLR+  +         ++DIT 
Sbjct: 483 NETDRQQIMQLLNRFEETPQSKIFANEEFGYWEIKVDRPLRLRVL--------PQSDITA 534

Query: 505 RKLSPLHQSFWLDILKPMMQQI---YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
            KL+   Q    +  +  MQ +    P    +++     K    KT+K K      V   
Sbjct: 535 GKLTSKEQ----EACRAAMQAVPNDTPLNNWDAYAAALGKL--TKTVKNKLRALITVP-- 586

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKI 619
                 DP  +PV    GE   D  L + E VP  Y   I+ +  REV P+ PDAY+ + 
Sbjct: 587 ------DPSCEPVA---GE--ADRALRDTEQVPLTYPGGIEAFMQREVLPYAPDAYVAE- 634

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             DE      +V YE++F ++FY+    R + DI A++K +E +   LL ++
Sbjct: 635 --DET-----KVVYELSFTKYFYKPVELRPIADIKADIKAIETETDGLLADI 679


>gi|295697500|ref|YP_003590738.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
 gi|295413102|gb|ADG07594.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
          Length = 613

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 280/520 (53%), Gaps = 48/520 (9%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           G    + NFIW  A+D+  D +    +  VILP T++RRL+  LEPT+ AV E   +   
Sbjct: 4   GQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLEMKASLDK 63

Query: 65  SNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDF 118
           + I  +  +    AG +FYNTS ++L  L +  +R  LE+    Y+  FS N + I ++F
Sbjct: 64  AGITHQDAALRMAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIIDNF 123

Query: 119 DFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIR 164
           +F + I RL KA  L  + + F    I L P  V             +  M  I+E L+R
Sbjct: 124 EFRNQIPRLAKADALGTLIEKFLDPSINLSPQPVLGSDGSVRLPGLDNHAMGTIFEELVR 183

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           RF  E +E A +  TPRD V L   L+ +P     +  P     LYD  CGTGG LT A 
Sbjct: 184 RFNEENNEEAGEHWTPRDAVRLMAHLVFEPIADRIESGP---YPLYDGACGTGGMLTVAE 240

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---ST 281
             +            +   GQE+  ET+A+C A +L++        D + NI  G   ST
Sbjct: 241 ETLLQLAKERGKQVSVHLFGQEINAETYAICKADLLLKG-----EGDAADNIVGGPEHST 295

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKD------KDAVEK-----EHKNGELGRFGPGLPK 330
           LS D F G+ F + LSNPP+GK W+ D      K  ++      +H+  EL      + +
Sbjct: 296 LSNDAFPGRTFDFMLSNPPYGKSWKSDLERMGGKAGIKDPRFVVQHRGEELSL----ITR 351

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            SDG MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAI
Sbjct: 352 SSDGQMLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAI 411

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449
           VALP ++F+ T IATY+W+L+NRK   R+G+VQLI+AT  +  +R N GKK   ++++  
Sbjct: 412 VALPLNMFYNTGIATYVWVLTNRKPGHRKGRVQLIDATQWYKPLRKNLGKKNCELSEEDI 471

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
           R++LD ++  E  + S++     FGY ++ V RPLR+  I
Sbjct: 472 RRVLDTFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKGI 511


>gi|258513231|ref|YP_003189487.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635134|dbj|BAI01108.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638189|dbj|BAI04156.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641243|dbj|BAI07203.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644298|dbj|BAI10251.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647353|dbj|BAI13299.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650406|dbj|BAI16345.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653397|dbj|BAI19329.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656450|dbj|BAI22375.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 797

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 207/590 (35%), Positives = 310/590 (52%), Gaps = 79/590 (13%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA---- 61
           S +SL +FIW+ A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+       
Sbjct: 5   SHSSLVSFIWRIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKDAVLEEVRYQKED 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIF 115
            G + +D E     +GY F+NTS ++L  L +T T N      N+E Y+  FSDN K I 
Sbjct: 65  IGVTELDDEPLKDASGYVFFNTSHWTLKKLYNTATNNQQILLANIEDYLDGFSDNVKEII 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHL 162
             F+    +  + +  +L  + + F    + L P+ + D             M  ++E L
Sbjct: 125 GRFNLFEQMRHMAEKQVLLDVIEKFVSPWVNLTPNDIEDPEGNTLPGLSNLGMGYVFEEL 184

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F  E +E A +  TPR+V+HL T L+ DP     K+    I T+YDP CG+GG LT+
Sbjct: 185 IRKFNEENNEEAGEHFTPREVIHLMTHLVFDP----IKDRLPQILTIYDPACGSGGMLTE 240

Query: 223 AMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           A N++ D  G  H    + + +G+E+  ET+A+C + M+I+   ++P     +NI+ GST
Sbjct: 241 AQNYITDADGPFHAHGDVYL-YGKEINDETYAICKSDMMIKG--NNP-----ENIRIGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL------------- 328
           LS D F+  RF + LSNPP+GK W  +   + K+ K     RF   L             
Sbjct: 293 LSTDEFSAHRFDFMLSNPPYGKSWNSEVKYI-KDGKGVIDPRFQVKLADYWGNVETMDAT 351

Query: 329 PKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P+ SDG +LFLM + +K++ P +    G R A V + S LF G AGSGES IRR+++END
Sbjct: 352 PRSSDGQLLFLMEMISKMK-PTSASPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIEND 410

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
           +++ I+ LP +LF+ T I TY+W+LSN K E RRG+VQLI+A  ++  +R N G K    
Sbjct: 411 MLDTIIQLPNNLFYNTGITTYIWLLSNAKPEARRGRVQLIDANLMFRKLRKNLGDKNCEF 470

Query: 445 NDDQRRQILDIY-----VSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +D+  +QI + +     V R+        G   ++ D   FGY ++ + RP R       
Sbjct: 471 SDEHIQQITEAFLNFAPVERQIDAAGDPEGIAVQVFDNADFGYHKVTIERPDRRRAAFSA 530

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
             LA L  D + R+  P+    WL        Q+Y  G    F+KE  K 
Sbjct: 531 ERLAPLRFDKSLRE--PME---WL--YDEHGDQVYQPG----FLKEQAKQ 569



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 53/85 (62%), Gaps = 8/85 (9%)

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + E+V   ++I  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY+++P
Sbjct: 708 LRDAESVALKDNIHRYFLAEVKPHVEEAWINLDSV--------KIGYEISFNKYFYRHKP 759

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R L+++  ++  +E +   L+ ++
Sbjct: 760 LRSLEEVTQDILALEEKADGLIADI 784


>gi|331084241|ref|ZP_08333346.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401776|gb|EGG81353.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 684

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 216/702 (30%), Positives = 337/702 (48%), Gaps = 76/702 (10%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFGGS 65
           SL +FIW  A D   D +   D+ K+ILP  ++RR +  LEP   AV   +E++   G +
Sbjct: 8   SLKSFIWGIANDCLVDVYDVGDYRKIILPMFVIRRFDAVLEPKHEAVMKAKEQFTKAGIT 67

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE----SYIASFSDNAKAIFEDFDFS 121
            +D  +   VA  +F N S+++L+ L S   +  L+     Y+  FS+N + I   F   
Sbjct: 68  ELDA-ALASVAEQAFVNKSDFTLTDLKSRTNQQQLKKDFIEYLDGFSENVQVIINKFHIR 126

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFG 167
           + I RL +   L  + + F    ++    P              +  M  ++E +IR F 
Sbjct: 127 NEIGRLSEQDRLGLLIEKFVDPRINLSNRPVLNEDGSVKIEALDNHTMGTLFEEVIRMFN 186

Query: 168 SE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            E  V++    F TPRD+V L   L   P     + +   I   YD  CGTGG LT    
Sbjct: 187 EETNVTDAGRHF-TPRDIVELIADLAFIPVQDKIQSTTYRI---YDGACGTGGMLTVGDE 242

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H+            +  +GQE   ET+A+  A ML++    +     S  I+ GST+S D
Sbjct: 243 HIKKLAKEQGKKVSIHLYGQENADETYAIARADMLVKGEGKE-----SDQIRFGSTISDD 297

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD--------KDAVEKEH------KNGELGRFGPGLPKI 331
            F  + F + LSNPPFG  W+ D        KD +           N E       +P I
Sbjct: 298 KFAKEEFDFMLSNPPFGTPWKTDLKAWGIGKKDEISDSRFIINYDDNSEYSL----IPDI 353

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            D  MLFL +  +K++     G R   V + S LF G+AGSG S +RR++ E DL EAI+
Sbjct: 354 GDPQMLFLANNISKMKTTTELGSRIIEVHNGSSLFTGKAGSGPSNLRRYIFEQDLCEAII 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           A+P ++F+ T I TYLW+L+N+K E+R+GKVQLI+AT +   +R N G K   +    R 
Sbjct: 414 AIPENMFYNTGIGTYLWVLTNKKDEKRKGKVQLIDATSMKEPLRKNLGDKNCEMTQKMRE 473

Query: 451 QILDIYVS--RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           +++++Y++  + + ++S+      FG+ +++V RPLR+   +    L   +        +
Sbjct: 474 KVMELYLAFDKADSEYSKAFLNEEFGFYQVEVNRPLRLRVNVSDEALEEFK--------N 525

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            +    + D L    +      +  SF+ +  KS  AK   +K +K    A    F   D
Sbjct: 526 SVEDDEFYDFLMTNEKDTESTNF-NSFIGKLEKS--AKKAGLKWTKKRENAIRKYFTTTD 582

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
             AD V D  G   PD NL + E VP  Y   I  +F  EV P+V DA+I        ++
Sbjct: 583 ENADVVLDKKGNIEPDNNLKDTEQVPLLYDGGITGFFENEVKPYVEDAWI--------NE 634

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           +   +GYE++F ++FY+    R L DI A+++ +E     LL
Sbjct: 635 DSAVIGYELSFTKYFYKPVQLRDLSDIIADIRAIEQSTDGLL 676


>gi|310826742|ref|YP_003959099.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612]
 gi|308738476|gb|ADO36136.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612]
          Length = 597

 Score =  293 bits (750), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 183/492 (37%), Positives = 263/492 (53%), Gaps = 38/492 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A  L+G +K  ++G VILP  +++R    L PTR  V   Y       +  + 
Sbjct: 18  ANLIWNVANSLFGAYKPHEYGLVILPMVVIKRFHDCLLPTREKVLATYEKVKQLAVK-DG 76

Query: 72  FVKVA-GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           F++ A GY FYNTS+Y+   L +   N + N E+YI  FSDN   I  +  F + I R+ 
Sbjct: 77  FLRTASGYRFYNTSQYTFERLKADPENIKTNFEAYINGFSDNVIDILANMGFFTQIERMA 136

Query: 129 KAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            AG+LY++  +F+    +++P+ +    M  ++E+L++ F     E A    T RD+++L
Sbjct: 137 DAGVLYQVISDFTADNADMNPEKISAIDMGYVFENLVQCFSESYDEEAGAHFTSRDIIYL 196

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    D   +++P   +T+YD   GT   LT     V       +I    + +GQE
Sbjct: 197 MCDLLTMNADFSGEDAPA--KTVYDMAMGTSQMLTCMEERVHALDKEAEI----ICYGQE 250

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           + P T  +  A MLIR    DP     +N+Q G TL+ D F G  F Y +SNPPFG  W+
Sbjct: 251 INPFTFGIAKADMLIRG--GDP-----ENMQFGDTLNADKFKGYTFDYIISNPPFGIDWK 303

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           ++   VEKEHK G+ GRFG GLP+ SDG MLFL++   KL+      GR AI+ + S LF
Sbjct: 304 REAADVEKEHKLGDAGRFGVGLPQKSDGQMLFLLNGIAKLK----DTGRMAIIQNGSSLF 359

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI+S  K E  R ++ LI+
Sbjct: 360 TGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYIWIVSKNKPETHRERILLID 419

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------------SRMLDYR 471
           A+    + R   G KR  I +  R  I   Y    +  F              S++LD  
Sbjct: 420 ASKCCEARRRPIGNKRVDITESCRNLITQAYSEYRSAIFTKTLEDKKTVLTCKSKVLDAI 479

Query: 472 TFGYRRIKVLRP 483
           + GY +I V  P
Sbjct: 480 SLGYNKITVESP 491



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 12/104 (11%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D   +P+    G+ + DT+  + E+VP  E +  YF REV P+ P A+IDK         
Sbjct: 494 DDDGNPIVK-KGKPVADTSKRDTESVPLDEDVDAYFAREVLPYRPGAWIDK--------S 544

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             +VGYEI F R FY+Y+      DI    K + A+   L+E++
Sbjct: 545 KTKVGYEIPFTRTFYEYEELEPAADI---AKRIAAREKVLMEKL 585


>gi|86130624|ref|ZP_01049224.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819299|gb|EAQ40458.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 809

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 188/528 (35%), Positives = 280/528 (53%), Gaps = 59/528 (11%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----L 60
            S + L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+  V ++     +
Sbjct: 4   SSHSKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKKEVMDEVHFQKV 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAI 114
             G + ++ E     +GY FYNTS+++L  L  T + N      N E Y+  FS N K I
Sbjct: 64  EAGFTELENEGLKAASGYVFYNTSKWTLQLLKDTASNNQSILLANFEDYLLGFSPNVKEI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNF--SGIELHP-----------DTVPDRVMSNIYEH 161
            + F+  S I  +    +L  + + F  S I L P             + +  M  ++E 
Sbjct: 124 VDKFNLVSQIKHMAGKDVLLDVLEKFTSSHINLTPFEKEDPEGRKLPALSNLGMGYVFEE 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIR+F  E +E A +  TPR+V+ L T ++ +P     K+    + T+YDP CG+GG LT
Sbjct: 184 LIRKFNEENNEEAGEHFTPREVIELMTHIIFEP----IKDQLPPVMTIYDPACGSGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++ N + D     K    +  +G+E+  ET+A+C + M+I+        +  +NI+ GST
Sbjct: 240 ESQNFIKDPEGAIKATGDVYLYGKEINDETYAICKSDMMIKG-------NSPENIRVGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKD-------KDAVEKEHKNGELGRFGP-----GLP 329
           LS D FTG  F + LSNPP+GK W  +       KD ++   K      +G       +P
Sbjct: 293 LSTDEFTGTSFDFMLSNPPYGKSWSSEQKYIKDGKDVIDPRFKIQLADYWGTVEDVDAVP 352

Query: 330 KISDGSMLFLMHLANK---LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           + SDG +LFLM + +K   LE  P  G R A V + S LF G AG GES IRR+++END+
Sbjct: 353 RSSDGQLLFLMEMVSKMKTLEQSP-AGTRIASVHNGSSLFTGDAGGGESNIRRYIIENDM 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAI+ LP +LF+ T I TY+W+LSN KT  R+GKVQLI+A+DL+  +R N G K     
Sbjct: 412 LEAIIQLPNNLFYNTGITTYIWVLSNNKTATRKGKVQLIDASDLYKKLRKNLGNKNCEFT 471

Query: 446 DDQRRQILDIYVSRENGKFSRML-------DYRTFGYRRIKVLRPLRM 486
                +I ++Y+S  + K +  L       D   FGY +  V RP R+
Sbjct: 472 KKHIDKITEVYMSALSRKRTEELPLESLVFDNSDFGYYKATVERPKRL 519



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 61/96 (63%), Gaps = 11/96 (11%)

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE++    +++L + ENVP  ++I  YF REV PHV +A+I+         +  ++GYEI
Sbjct: 718 GEYVVYETESDLRDTENVPLKDNIHSYFKREVHPHVAEAWINL--------DATKIGYEI 769

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY++ P R ++++ A++  +E Q   L+ ++
Sbjct: 770 SFNKYFYKHTPLRNIEEVTADILDLEKQSDGLIADI 805


>gi|259156157|gb|ACV96105.1| N-6 DNA methylase [Providencia alcalifaciens Ban1]
          Length = 809

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 285/542 (52%), Gaps = 64/542 (11%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 9   LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E F+
Sbjct: 69  ELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L  +TV D             M  ++E LIR+F
Sbjct: 129 LKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +   +      L  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS D 
Sbjct: 245 IEEKYPNDSRDVYL--YGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLSTDE 295

Query: 287 FTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKISDG 334
           F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ SDG
Sbjct: 296 FAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDG 355

Query: 335 SMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++AIV 
Sbjct: 356 QLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQ 415

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +   +
Sbjct: 416 LPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITE 475

Query: 452 ILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           I D Y++ E+            G  S++     FGY ++ + RP R      +  +A L 
Sbjct: 476 ITDTYLACEDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLR 535

Query: 500 AD 501
            D
Sbjct: 536 FD 537



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 11/93 (11%)

Query: 579 GEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I     ++L + E+VP  +SI  YF+ EV PH+ +A+I+         +  ++GYEI
Sbjct: 710 GEYITYETSSDLRDTESVPLKQSIHQYFLDEVKPHIDEAWINL--------DTVKIGYEI 761

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           +FN++FY ++P R L+++  ++  +E +   L+
Sbjct: 762 SFNKYFYLHKPLRSLEEVATDIINLEQKAEGLI 794


>gi|225026440|ref|ZP_03715632.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353]
 gi|224956232|gb|EEG37441.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353]
          Length = 592

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 182/501 (36%), Positives = 265/501 (52%), Gaps = 34/501 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T    ++   A  IW  A+DL G +K  ++G VILP T+++R    L  T  AV + Y 
Sbjct: 7   ITNVGKNSNDTAALIWSVADDLVGAYKPHEYGLVILPMTVIKRFHDCLLLTHQAVLDTYK 66

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDF 118
                 +      K +GY FYNTS ++  TL +   N  +N ++Y+  FSDN + I    
Sbjct: 67  KVEKLAVKDGFLRKSSGYQFYNTSPFTFKTLIADPENIVDNFKAYLNGFSDNVQDILARM 126

Query: 119 DFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF S I  +E+AGLLY++  +F     +  P+ +    M  I+E+L+RRF    +E A  
Sbjct: 127 DFDSQIKHMEEAGLLYQVISDFCTDKGDFSPEKISAVDMGYIFENLVRRFSESYNEEAGA 186

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RD+++L + LL+  D++ F    G+ +T+YD T GT   LT     +    +   +
Sbjct: 187 HFTSRDIIYLMSDLLVAGDESAFT-GDGISKTVYDMTMGTSQMLTCMEERLKQMDADADV 245

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQE  P T  +  A MLIR    DP      N+Q G TLS D F+G +F Y +
Sbjct: 246 ----TVFGQEFNPFTFGIAKADMLIRG--GDPN-----NMQFGDTLSDDKFSGYKFDYII 294

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W++++  V  E K G  GRF PGLP   DG +LF+++   KL+      G+ 
Sbjct: 295 SNPPFGIPWKREEKEVTAEFKKGTAGRFAPGLPAKGDGQLLFMLNGLAKLK----DDGQM 350

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + S LFNG AGSG SEIRR+L+END ++AIV LP + F+ T IATY+WI+   K  
Sbjct: 351 AIIQNGSSLFNGDAGSGPSEIRRYLIENDWLDAIVQLPNNAFYNTGIATYIWIVMKNKPV 410

Query: 417 ERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF----------- 464
             +GKVQLI+A+   +S R N G K   I    R  I+  Y +  +  +           
Sbjct: 411 THQGKVQLIDASACCSSRRKNIGSKNVDITKACRDLIIKAYGAYVDETYNGVDENDNAII 470

Query: 465 --SRMLDYRTFGYRRIKVLRP 483
             S+++D    GY +I V  P
Sbjct: 471 VKSKVMDAIDLGYNKIVVETP 491



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + D +  + ENVP  E I  YF REV P+ P A+IDK           +VGYEI F R F
Sbjct: 507 VVDKSKRDTENVPLAEDIDAYFEREVIPYNPQAWIDKAKT--------KVGYEIPFTRTF 558

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y+YQ       I A ++  E  +   L  +
Sbjct: 559 YEYQQIEPSDVIAARIEYYEKSLMAKLHNL 588


>gi|300825350|ref|ZP_07105429.1| N-6 DNA Methylase [Escherichia coli MS 119-7]
 gi|300522185|gb|EFK43254.1| N-6 DNA Methylase [Escherichia coli MS 119-7]
          Length = 819

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 284/542 (52%), Gaps = 64/542 (11%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 21  LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQAT 80

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E F+
Sbjct: 81  ELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFN 140

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L  +T+ D             M  ++E LIR+F
Sbjct: 141 LKSQIRHMASKQVLLDVVEKFVSPYINLTHETIEDPDGNKMPALTNLGMGYVFEELIRKF 200

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     KE   +  T+YDP CG+GG LT++ N 
Sbjct: 201 NEENNEEAGEHFTPREVIELMTHLVFDP----VKEQLPLTMTVYDPACGSGGMLTESQNF 256

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +   +      L  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS D 
Sbjct: 257 IEEKYPNDSRDIYL--YGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLSTDE 307

Query: 287 FTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKISDG 334
           F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ SDG
Sbjct: 308 FAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDG 367

Query: 335 SMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++AIV 
Sbjct: 368 QLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQ 427

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      +   +
Sbjct: 428 LPNNLFYNTGITTYIWVLSNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITE 487

Query: 452 ILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           I D Y++  +            G  S++     FGY ++ + RP R      +  +A L 
Sbjct: 488 ITDTYLACVDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAIAPLR 547

Query: 500 AD 501
            D
Sbjct: 548 FD 549



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 61/96 (63%), Gaps = 11/96 (11%)

Query: 579 GEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I    +++L + E+VP  +SI  YF+ EV PHV +A+I+         +  ++GYEI
Sbjct: 722 GEYITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINL--------DTVKIGYEI 773

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P R L+++  ++  +E +   L+ ++
Sbjct: 774 SFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQI 809


>gi|229520260|ref|ZP_04409686.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80]
 gi|167832524|gb|ACA01834.1| DNA methylase HsdM [Vibrio cholerae]
 gi|229342626|gb|EEO07618.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80]
          Length = 793

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 208/608 (34%), Positives = 321/608 (52%), Gaps = 94/608 (15%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E  ++     + I
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEMNEI 68

Query: 68  DLES--FVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
           +L+       +GY FYNTS+++L TL ST T N      N E Y+  FS+N K I E F+
Sbjct: 69  ELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIRRF 166
             + I  +    +L  + + F    I L P    D        +SN     ++E LIR+F
Sbjct: 129 LKAQIRHMAGKNVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K++  +  T+YDP CG+GG LT+  N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDNLPLSITVYDPACGSGGMLTETQNF 244

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           V +     K P     +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS
Sbjct: 245 VEE-----KYPASNRDIYLYGKEINDETYAICKSDMMIKG--NNP-----ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F+  RF + LSNPP+GK W  ++  + KE K    GRF                +P+
Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P +   G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRYIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGKFSRMLDYR--------------TFGYRRIKVLRPLRMSFILDKT 493
              +I+  Y+  EN    R +D +               FGY ++ + RP R +      
Sbjct: 472 HIAEIVSTYL--ENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRN------ 523

Query: 494 GLARLEADITWRKLSPLH-QSFWLDILKPMM----QQIYPYGWAESFVKESIKSNEAKTL 548
             A+  AD+    + PL  ++   ++++ +     +Q+Y  G+ +   KE  K  E   +
Sbjct: 524 --AQFRADL----IEPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDI 577

Query: 549 KV-KASKS 555
            + KA+K+
Sbjct: 578 SLNKAAKT 585



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 8/87 (9%)

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E+VP  +SI  YF+ EV PHV +A+++         E  ++GYEI+FN++FY++
Sbjct: 705 SDLRDSESVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRH 756

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R + ++  E+  +E +   L+ ++
Sbjct: 757 KPLRSMDEVAKEIIALEQKAEGLIADI 783


>gi|259156577|gb|ACV96520.1| N-6 DNA methylase [Vibrio fluvialis Ind1]
          Length = 809

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 285/542 (52%), Gaps = 64/542 (11%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 9   LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E F+
Sbjct: 69  ELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L  +TV D             M  ++E LIR+F
Sbjct: 129 LKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +   +      L  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS D 
Sbjct: 245 IEEKYPNDSRDVYL--YGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLSTDE 295

Query: 287 FTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKISDG 334
           F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ SDG
Sbjct: 296 FAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDG 355

Query: 335 SMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++AIV 
Sbjct: 356 QLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQ 415

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +   +
Sbjct: 416 LPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITE 475

Query: 452 ILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           I + Y++ E+            G  S++     FGY ++ + RP R      +  +A L 
Sbjct: 476 ITETYLACEDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLR 535

Query: 500 AD 501
            D
Sbjct: 536 FD 537



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 61/96 (63%), Gaps = 11/96 (11%)

Query: 579 GEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I    +++L + E+VP  +SI  YF+ EV PHV +A+I+         +  ++GYEI
Sbjct: 710 GEYITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINL--------DTVKIGYEI 761

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P R L+++  ++  +E +   L+ ++
Sbjct: 762 SFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQI 797


>gi|292490879|ref|YP_003526318.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
 gi|291579474|gb|ADE13931.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
          Length = 799

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 282/526 (53%), Gaps = 66/526 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT++AV E+ + F    + L
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKAAVLEE-VRFQRKEMKL 67

Query: 70  -----ESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDF 118
                 +    +GY FYN S+++L  L  T T N      N+E Y++ +S N K I   F
Sbjct: 68  TELEDSALQAASGYVFYNASKWTLKQLYQTATNNQQILLANVEEYLSGYSGNVKEIIGKF 127

Query: 119 DFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD----RV-------MSNIYEHLIRR 165
           +  + +  +    +L  + + F+   I L  +   D    R+       M  ++E LIRR
Sbjct: 128 NLKAQVRHMAAKDVLLDVLEKFTSPYINLTHEEAQDPEGNRLPALSNLGMGYVFEELIRR 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E +E A +  TPR+V+ L T L+ DP     K+    + T+YDP CG+GG LT++ N
Sbjct: 188 FNEENNEEAGEHFTPREVIELMTHLVFDP----VKDKLPPVMTIYDPACGSGGMLTESQN 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + D     +    +  +G+E+  ET+A+C + M+I+   ++P      NI+ GSTLS D
Sbjct: 244 FIKDEEGAIRASGDVYLYGKEINDETYAICKSDMMIKG--NNP-----ANIRVGSTLSTD 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGL-------------PK 330
            F G RF + LSNPP+GK W  ++  ++     GE+   RF   L             P+
Sbjct: 297 EFAGNRFDFMLSNPPYGKSWAGEQKYIKD---GGEVIDPRFKVQLKDYWGHVETVDAAPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNGG--GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P  GG   R A V + S LF G AGSGES IRR ++ENDL+E
Sbjct: 354 SSDGQLLFLMEMISKMKAPQAGGLGSRIASVHNGSSLFTGDAGSGESNIRRHIIENDLLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LSN K E RRGK QLI+A+ L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKPEHRRGKAQLIDASRLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYV--------SRENGKFSRMLDYRTFGYRRIKVLRPLR 485
             R+I   Y+        +   G  +++ D R FGY ++ + RP R
Sbjct: 474 HIREITQTYLELASIDRPAGAEGIAAQVFDNRDFGYYKVAIERPDR 519



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 8/87 (9%)

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E +P  + I  YF  EV PHV +A+I+   +        ++GYEI+FN++FY++
Sbjct: 707 SDLRDSETIPLKDDIHQYFKAEVKPHVSEAWINMDSV--------KIGYEISFNKYFYRH 758

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           QP R ++++  E+  +E Q   L+ ++
Sbjct: 759 QPLRSMEEVAREIIALEQQAEGLIADI 785


>gi|323351171|ref|ZP_08086827.1| type I restriction-modification [Streptococcus sanguinis VMC66]
 gi|322122395|gb|EFX94106.1| type I restriction-modification [Streptococcus sanguinis VMC66]
          Length = 702

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 229/703 (32%), Positives = 343/703 (48%), Gaps = 90/703 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +S  N +W  A  L G ++   +  VI+P  +L RLE AL PT+  V     A+      
Sbjct: 19  SSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQV---IAAYKKDKKT 75

Query: 69  LESFVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            E  ++ ++GY +YNTS ++L  L +       N  +Y+  +S   K I E+  F   + 
Sbjct: 76  PEQILEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKFKEQVH 135

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L + G L+ + K FS I+L P TV    M  ++E +IRRF    +E A    TPR+V+ 
Sbjct: 136 TLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTPREVIA 193

Query: 186 LATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           L   LLL + D+ LF +    I  + D   GTGG L  A +++    S   +    +  G
Sbjct: 194 LMVNLLLVEADEELFVDK--RIVKILDMAAGTGGMLATAKSYIRRLNSEVNV----LLFG 247

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE   ET+ +  A MLIR+  SD        ++  +    D F  K+ ++ ++NPPFG+ 
Sbjct: 248 QEYLSETYGIGRADMLIRQENSD------YFVKTDTLKDGDPFADKKMNFVIANPPFGQS 301

Query: 305 WE-KDKD-----AVEKEHK-----NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           W  KD D     AV+K+ +     +G  GRF    P   D  +LF +H   KLE      
Sbjct: 302 WGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKLE----KN 356

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAAI+ + SPLF+G   SGES+IRR++LENDL+EAI+ALP   F+ T I  Y+WI +  
Sbjct: 357 GRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIWIYNKN 416

Query: 414 KTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  +RR KVQ I+AT+ +  +R   G+KRR +++D  RQI+  Y + E     ++ D + 
Sbjct: 417 KAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKIFDNKE 476

Query: 473 FGYRRIKVLRPL-RMSFILDKT--------GLARLEADITWRKLSPLH------------ 511
           F Y+   V++PL R   I + T         +A+L  +  +++L  +             
Sbjct: 477 FLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDEKKLQD 536

Query: 512 -------QSFWLDILK-PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
                  Q   L+ L+  +    YP     S V   + S      +VK + + + A   A
Sbjct: 537 LAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLS------EVKVTPANVNAIALA 590

Query: 564 FGRKDPRADPVT----DVNGE----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
               D  A+ VT    D  GE     + D    + E V   E+++DYF REV PHVPDA+
Sbjct: 591 MSEMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTENVEDYFAREVYPHVPDAH 650

Query: 616 IDKIFIDEKDKEIGR-VGYEINFNRFFYQYQPSRKLQDIDAEL 657
               + DE     G+  G EI F R+FYQYQ       + AE 
Sbjct: 651 ---YWFDE-----GKGYGAEIPFTRYFYQYQAPESADKLLAEF 685


>gi|124485663|ref|YP_001030279.1| hypothetical protein Mlab_0841 [Methanocorpusculum labreanum Z]
 gi|124363204|gb|ABN07012.1| N-6 DNA methylase [Methanocorpusculum labreanum Z]
          Length = 608

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 297/561 (52%), Gaps = 50/561 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               + +A+FIW  A+D   D +    +  VILP T++RR++  LEPT+  V  +     
Sbjct: 6   AAQVSKIASFIWNIADDCLRDVYSRGKYRDVILPMTVIRRIDAVLEPTKEKVIAQKKMLD 65

Query: 64  GSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFED 117
            +NI  +S      +G +FYN+S + L  L S      L++    Y+  +S N + I   
Sbjct: 66  KANIKAQSDALCLASGQAFYNSSPFCLKDLTSRAKPQQLKADFIAYLDGYSPNIQEILNK 125

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDR------------VMSNIYEHLI 163
           F F + I  + +AG+L  + + F  S I L  + + D+            +M  ++E L+
Sbjct: 126 FKFRNQIDTMIEAGILGAVIEKFVSSEINLSMNDILDKQGGVRMPGLDNHMMGTLFEELL 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPRDVV L   L+  P     ++   +   LYD  CGTGG LT  
Sbjct: 186 RKFNEENNEEAGEHFTPRDVVELMADLVFMPIADKIEDGTYL---LYDDACGTGGMLTVG 242

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + +    +     +   GQE  PET+A+C + ML++      + + +++I  GSTLS
Sbjct: 243 EQRLNELAIKYNKKFSVHLFGQETVPETYAICKSDMLLK-----GKGEQAEHIFYGSTLS 297

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-----------HKNGELGRFGPGLPKIS 332
            D F G  F + +SNPP+GK W+ D + +  +           HKN EL      +P++S
Sbjct: 298 NDGFAGHEFDFMISNPPYGKSWKTDAEKMGGKKDISDPRFVVLHKNEELSL----IPRVS 353

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG MLFL +  +K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+A
Sbjct: 354 DGQMLFLANNVSKMKSKTKLGSRIAEVHNGSSLFTGDAGSGESNFRRYIIENDLVEAIIA 413

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP ++F+ T IATY+W+LSN+K+E RRGKVQLI+AT   T +R N GKK   ++ +Q+ +
Sbjct: 414 LPENIFYNTGIATYIWVLSNKKSESRRGKVQLIDATSFKTPLRKNLGKKNCEVSFEQKNE 473

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADITWRKLS 508
           I+ + +  +  +FS++     F Y  I V RP      + + DK G  + +AD+   ++ 
Sbjct: 474 IVKLLIDFKENEFSKIFRNEEFLYWSITVERPKVDEAGNVVKDKKGSPKADADLRDVEMV 533

Query: 509 PLHQSFWLDILKPMMQQIYPY 529
           P      ++    M  ++ PY
Sbjct: 534 PYVYEGGIEAF--MKNEVLPY 552



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 10/106 (9%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           D   + V D  G    D +L + E VPY+    I+ +   EV P+ PDA++D       D
Sbjct: 508 DEAGNVVKDKKGSPKADADLRDVEMVPYVYEGGIEAFMKNEVLPYSPDAWVD-------D 560

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           K+    G E++F ++FY+    R L +I A+++ +E +   +LE++
Sbjct: 561 KKT-ETGCELSFTKYFYKPVELRSLDEIVADIRALEKESDGMLEDI 605


>gi|282600127|ref|ZP_05973122.2| type I restriction-modification system, M subunit [Providencia
           rustigianii DSM 4541]
 gi|282566525|gb|EFB72060.1| type I restriction-modification system, M subunit [Providencia
           rustigianii DSM 4541]
          Length = 821

 Score =  289 bits (740), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 291/556 (52%), Gaps = 67/556 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 21  LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQAT 80

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E F+
Sbjct: 81  ELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFN 140

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L  +T  D             M  ++E LIR+F
Sbjct: 141 LKSQIRHMASKQVLLDVVEKFVSPYINLTHETAEDPDGNKMPALTNLGMGYVFEELIRKF 200

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 201 NEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTESQNF 256

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +   +      L  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS D 
Sbjct: 257 IEEKYPNDSRDVYL--YGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLSTDE 307

Query: 287 FTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKISDG 334
           F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ SDG
Sbjct: 308 FAASRFDFMLSNPPYGKSWASEQKYIKDGSDVIDPRFKVSLKDYWGNFEVVDATPRSSDG 367

Query: 335 SMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++AIV 
Sbjct: 368 QLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQ 427

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +   +
Sbjct: 428 LPNNLFYNTGITTYIWVLNNNKPEVRKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITE 487

Query: 452 ILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           I D Y++ ++            G  S++     FGY ++ + RP R      +  +A L 
Sbjct: 488 ITDTYLACKDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAIAPLR 547

Query: 500 ADITWRKLSPLHQSFW 515
            D   R+LS + +  +
Sbjct: 548 FD---RQLSEVMEYVY 560



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 59/96 (61%), Gaps = 11/96 (11%)

Query: 579 GEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I    +++L + E+VP  +SI  YF  EV PHV +A+I+         +  ++GYEI
Sbjct: 722 GEYITYETNSDLRDTESVPLKQSIYQYFKGEVKPHVDEAWINL--------DTVKIGYEI 773

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY ++P R L+++  ++  +E +   L+ ++
Sbjct: 774 SFNKYFYMHKPLRSLEEVATDIINLEQKSEGLIAQI 809


>gi|332666807|ref|YP_004449595.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335621|gb|AEE52722.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 788

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 289/550 (52%), Gaps = 67/550 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG----- 64
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+ LAF       
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEE-LAFQRDEAKF 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDF 118
           +  D       +GY FYNTS+++L  L  T T N      N E Y+  FS N K I E F
Sbjct: 68  TEWDENGLRDASGYVFYNTSKWTLQLLKDTATNNQQILQANFEDYLNGFSPNVKEIIEKF 127

Query: 119 DFSSTIARLEKAGLLYKICKNFS--GIELHP--DTVPDR----VMSN-----IYEHLIRR 165
              S +  +    +L  + + F+   I L P   T PD      +SN     ++E LIR+
Sbjct: 128 KLKSQVRHMAAKDVLLDVLEKFTSPAINLTPFEKTDPDGRKLPALSNLGMGYVFEELIRK 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E +E A +  TPR+V+ L T L+ +P   + ++ P ++ T+YDP CG+GG LT++ N
Sbjct: 188 FNEENNEEAGEHFTPREVIDLMTHLIFEP---VARQLPPVM-TIYDPACGSGGMLTESQN 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V D     +    +  +G+E+  ET+A+C + M+I+   +DP     +NI+ GSTLS D
Sbjct: 244 FVKDEEGIIQAKGDVYLYGKEINDETYAICKSDMMIKG--NDP-----ENIRVGSTLSTD 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PKIS 332
            F GK F + LSNPP+GK W  ++  + K+ K     RF   L             P+ S
Sbjct: 297 EFAGKTFDFMLSNPPYGKSWASEQKYI-KDGKEVIDSRFKIKLTDYWGQVEEADATPRSS 355

Query: 333 DGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           DG +LFLM + NK++       G R A V + S LF G AG GES IRR+L+END +EAI
Sbjct: 356 DGQLLFLMEMVNKMKPLSQSPLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLEAI 415

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449
           + LP +LF+ T I TY+W+LSN K   R+GKVQLI+A  L+  +R N G K      +  
Sbjct: 416 IQLPNNLFYNTGITTYIWLLSNHKAASRQGKVQLIDAGLLYRKLRKNLGNKNCEFAPEHI 475

Query: 450 RQILDIYVSRE-------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           R+I+ +Y   +              G  +++ D   FGY ++ + RP R+        +A
Sbjct: 476 REIVSVYEEMQEIERSINPSTQEGEGIAAKVFDNADFGYYKVSIERPKRLKAQFTLERIA 535

Query: 497 RLEADITWRK 506
            L  D + R+
Sbjct: 536 ELRFDKSLRE 545



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 66/100 (66%), Gaps = 11/100 (11%)

Query: 575 TDVNGEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           +D  GE++    +++L + ENVP  E+   YF+REV PHVP+A+I+         +  ++
Sbjct: 693 SDKKGEYLTYETESDLRDTENVPLKENSYRYFLREVKPHVPEAWINL--------DATKI 744

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI+FN++FY+++P R ++++ A++  +E++   L+ E+
Sbjct: 745 GYEISFNKYFYRHKPLRSIEEVSADILKLESESDGLIREI 784


>gi|189425260|ref|YP_001952437.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189421519|gb|ACD95917.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 778

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 186/508 (36%), Positives = 268/508 (52%), Gaps = 39/508 (7%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSNI 67
           + +FIW  A+D+  D FK   +  VILP  +LRRL+  LEPT+ AV   ++ L   G   
Sbjct: 9   IVSFIWGIADDVLRDLFKRGKYPDVILPMCVLRRLDAVLEPTKQAVLDTKQMLDDAGITE 68

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSST 123
              +  + AG +FYNTS ++L  L S   +  L    E Y+  FS N + I E+F F + 
Sbjct: 69  QKAALCEAAGQAFYNTSRFTLRDLRSRANQQQLKLDFEDYLDGFSQNVQDILENFKFRNQ 128

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRFGSE 169
           I+ L KA  +  + + F    I + P+ V             +  M  ++E L+R+F  +
Sbjct: 129 ISTLSKADAIGTLIEKFLDPDINVSPNPVLNSDGSVRLPAMDNHSMGTVFEELVRKFNED 188

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRD V L   L+  P   +  +       LYD  CGTGG LT A   + +
Sbjct: 189 NNEEAGEHWTPRDAVKLMARLIFLP---IADQVQSGSYQLYDGACGTGGMLTLAEETLLE 245

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +           GQE+ PET+A+C A ML++        D      + STL+ D F  
Sbjct: 246 LTAAQDKQVKTYLFGQEINPETYAICKADMLMKG--EGENADHIVGGAEWSTLAHDAFPA 303

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNG-ELGRFGPG---------LPKISDGSMLFL 339
             F + LSNPP+GK W+KD D +    K+G    RF            + + SDG M+FL
Sbjct: 304 HEFDFMLSNPPYGKSWKKDLDTMGG--KDGIRDSRFKITHADDTDYSLITRSSDGQMMFL 361

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            ++  K+      G R A V + S LF G AG GES IRRW++E D +EAIVALP +LF+
Sbjct: 362 ANMVAKMNHTSRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIEKDWLEAIVALPLNLFY 421

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVS 458
            T IATY+W+LSNRK + R+GKVQLI+AT  +  +R N GKK   ++DD  ++I D Y S
Sbjct: 422 NTGIATYIWVLSNRKPDHRKGKVQLIDATAWFKPLRKNLGKKNCELSDDDIQRICDTYQS 481

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRM 486
               + S++   + FGY ++ V RPLR+
Sbjct: 482 FTESEQSKIFQNKAFGYWKVTVERPLRL 509



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 10/94 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PDT+L + E VP LE   I+ +  REV P+ PDA++D+           ++GYEI+F
Sbjct: 687 EYEPDTDLRDTEQVPLLEDGGIEAFIQREVLPYTPDAWLDE--------SKTKIGYEISF 738

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            R FY+ QP R L++I A++  VE +   LL+++
Sbjct: 739 TRHFYKPQPLRTLEEIRADILAVEQEAEGLLDDL 772


>gi|15641772|ref|NP_231404.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585796|ref|ZP_01675590.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80]
 gi|121727690|ref|ZP_01680785.1| DNA methylase HsdM, putative [Vibrio cholerae V52]
 gi|147674983|ref|YP_001217310.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|153817851|ref|ZP_01970518.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457]
 gi|153821147|ref|ZP_01973814.1| DNA methylase HsdM, putative [Vibrio cholerae B33]
 gi|227081914|ref|YP_002810465.1| putative DNA methylase HsdM [Vibrio cholerae M66-2]
 gi|229508128|ref|ZP_04397633.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286]
 gi|229511633|ref|ZP_04401112.1| hypothetical protein VCE_003042 [Vibrio cholerae B33]
 gi|229518772|ref|ZP_04408215.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9]
 gi|229607689|ref|YP_002878337.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236]
 gi|255744816|ref|ZP_05418766.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholera CIRS 101]
 gi|262161901|ref|ZP_06030919.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae INDRE 91/1]
 gi|262169769|ref|ZP_06037460.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae RC27]
 gi|298498161|ref|ZP_07007968.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656291|gb|AAF94918.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549934|gb|EAX59952.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80]
 gi|121629987|gb|EAX62395.1| DNA methylase HsdM, putative [Vibrio cholerae V52]
 gi|126511671|gb|EAZ74265.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457]
 gi|126521343|gb|EAZ78566.1| DNA methylase HsdM, putative [Vibrio cholerae B33]
 gi|146316866|gb|ABQ21405.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|227009802|gb|ACP06014.1| putative DNA methylase HsdM [Vibrio cholerae M66-2]
 gi|227013669|gb|ACP09879.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|229343461|gb|EEO08436.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9]
 gi|229351598|gb|EEO16539.1| hypothetical protein VCE_003042 [Vibrio cholerae B33]
 gi|229355633|gb|EEO20554.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286]
 gi|229370344|gb|ACQ60767.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236]
 gi|255737287|gb|EET92682.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholera CIRS 101]
 gi|262022003|gb|EEY40713.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae RC27]
 gi|262028633|gb|EEY47288.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae INDRE 91/1]
 gi|297542494|gb|EFH78544.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 793

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 208/608 (34%), Positives = 321/608 (52%), Gaps = 94/608 (15%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E  ++     + I
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEMNEI 68

Query: 68  DLES--FVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
           +L+       +GY FYNTS+++L TL ST T N      N E Y+  FS+N K I E F+
Sbjct: 69  ELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIRRF 166
             + I  +    +L  + + F    I L P    D        +SN     ++E LIR+F
Sbjct: 129 LKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K++  +  T+YDP CG+GG LT+  N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDNLPLSITVYDPACGSGGMLTETQNF 244

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           V +     K P     +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS
Sbjct: 245 VEE-----KYPASNRDIYLYGKEINDETYAICKSDMMIKG--NNP-----ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F+  RF + LSNPP+GK W  ++  + KE K    GRF                +P+
Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P +   G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGKFSRMLDYR--------------TFGYRRIKVLRPLRMSFILDKT 493
              +I+  Y+  EN    R +D +               FGY ++ + RP R +      
Sbjct: 472 HIAEIVSTYL--ENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRN------ 523

Query: 494 GLARLEADITWRKLSPLH-QSFWLDILKPMM----QQIYPYGWAESFVKESIKSNEAKTL 548
             A+  AD+    + PL  ++   ++++ +     +Q+Y  G+ +   KE  K  E   +
Sbjct: 524 --AQFRADL----IEPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDI 577

Query: 549 KV-KASKS 555
            + KA+K+
Sbjct: 578 SLNKAAKT 585



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 55/87 (63%), Gaps = 8/87 (9%)

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E+VP  +SI  YF+ EV PHV +A+I+         E  ++GYEI+FN++FY++
Sbjct: 705 SDLRDSESVPLEQSIYQYFLDEVKPHVDEAWINL--------ESVKIGYEISFNKYFYRH 756

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R + ++  ++  +E +   L+ ++
Sbjct: 757 KPLRSMDEVAGDIIALEQKAEGLIADI 783


>gi|71737179|ref|YP_272418.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557732|gb|AAZ36943.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 801

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 190/526 (36%), Positives = 285/526 (54%), Gaps = 66/526 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF-----GG 64
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP+++ V E+ LAF       
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKAKVMEE-LAFQQGEMSQ 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDF 118
           + +D  +    +GY FYNTS+++LS L  T T N      N+E Y+  FSDN K I   F
Sbjct: 68  TELDDSALRSASGYVFYNTSKWTLSQLQKTATNNQQILLNNVEEYLDGFSDNVKDIVRRF 127

Query: 119 DFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD----RV-------MSNIYEHLIRR 165
           +  S +  +    +L  + + F+   + L P  + D    R+       M  ++E LIR+
Sbjct: 128 NLKSQMRHMASKDVLLDVLEKFTSPYVNLTPTDIEDPEGNRLPALSNLGMGYVFEELIRK 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E +E A +  TPR+V+ L T L+ DP     K+S   + T+YDP CG+GG LT++ N
Sbjct: 188 FNEENNEEAGEHFTPREVIELMTHLVFDP----IKDSLPPVMTIYDPACGSGGMLTESQN 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +          +  +G+E+  ET+A+C + M+I+   ++P      +I+ GSTLS D
Sbjct: 244 FIEEKYPDPTTQRDIHLYGKEINDETYAICKSDMMIKG--NNP-----AHIRPGSTLSVD 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGL-------------PK 330
            F G RF + LSNPP+GK W  ++  ++     GE+   RF   L             P+
Sbjct: 297 EFAGSRFDFMLSNPPYGKSWASEQKFIKD---CGEVIDPRFKVSLRDYWDNPEMQDATPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++    G  G R A V + S LF G AGSGES IRR L+ENDL++
Sbjct: 354 SSDGQLLFLMEMVNKMKASGEGSLGSRIASVHNGSSLFTGDAGSGESNIRRHLIENDLLD 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LS+ K  +RRGKVQLI+A+ L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSSNKPVQRRGKVQLIDASLLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYV--------SRENGKFSRMLDYRTFGYRRIKVLRPLR 485
               I   Y+        +  +G  +++ D R FGY ++ + RP R
Sbjct: 474 HIELITQTYLDLASLDRPAGGDGIAAQVFDNRDFGYHKVSIERPDR 519



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 11/100 (11%)

Query: 575 TDVNGEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           +D  GEWI    +++L + E++P  +SI  +F  EV PHV +A+I+         E  ++
Sbjct: 694 SDKAGEWITYESNSDLRDSESIPLADSIHHFFKAEVQPHVEEAWINL--------ESVKI 745

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI+FN++FY++QP R   ++  E+  +E Q   L+ E+
Sbjct: 746 GYEISFNKYFYKHQPLRSTDEVAREIIALEQQAEGLIAEI 785


>gi|324991450|gb|EGC23383.1| type I restriction-modification [Streptococcus sanguinis SK353]
 gi|332362404|gb|EGJ40204.1| type I restriction-modification [Streptococcus sanguinis SK1056]
          Length = 702

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 228/702 (32%), Positives = 340/702 (48%), Gaps = 88/702 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +S  N +W  A  L G ++   +  VI+P  +L RLE AL PT+  V     A+      
Sbjct: 19  SSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQV---IAAYKKDKKT 75

Query: 69  LESFVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            E  ++ ++GY +YNTS ++L  L +       N  +Y+  +S   K I E+  F   + 
Sbjct: 76  PEQILEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKFKEQVH 135

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L + G L+ + K FS I+L P TV    M  ++E +IRRF    +E A    TPR+V+ 
Sbjct: 136 TLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTPREVIA 193

Query: 186 LATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           L   LLL + D+ LF +    I  + D   GTGG L  A +++    S   +    +  G
Sbjct: 194 LMVNLLLVEADEELFVDK--RIVKILDMAAGTGGMLATAKSYIRRLNSEVNV----LLFG 247

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE   ET+ +  A MLIR+  SD        ++  +    D F  K+ ++ ++NPPFG+ 
Sbjct: 248 QEYLSETYGIGRADMLIRQENSD------YFVKTDTLKDGDPFADKKMNFVIANPPFGQS 301

Query: 305 WE-KDKD-----AVEKEHK-----NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           W  KD D     AV+K+ +     +G  GRF    P   D  +LF +H   KLE      
Sbjct: 302 WGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKLE----KN 356

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAAI+ + SPLF+G   SGES+IRR++LENDL+EAI+ALP   F+ T I  Y+WI +  
Sbjct: 357 GRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIWIYNKN 416

Query: 414 KTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  +RR KVQ I+AT+ +  +R   G+KRR +++D  RQI+  Y + E     ++ D + 
Sbjct: 417 KAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKIFDNKE 476

Query: 473 FGYRRIKVLRPL-RMSFILDKT--------GLARLEADITWRKLSPLH------------ 511
           F Y+   V++PL R   I + T         +A+L  +  +++L  +             
Sbjct: 477 FLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDEKKLQD 536

Query: 512 -------QSFWLDILK-PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
                  Q   L+ L+  +    YP     S V   + S      +VK + + + A    
Sbjct: 537 LAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLS------EVKVTPANVNAIALT 590

Query: 564 FGRKDPRADPVT----DVNGE----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
               D  A+ VT    D  GE     + D    + E V   E ++DYF REV PHVPDA+
Sbjct: 591 MSEMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTEDVEDYFAREVYPHVPDAH 650

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
               F +EK       G EI F R+FYQYQ       + AE 
Sbjct: 651 Y--WFDEEKG-----YGAEIPFTRYFYQYQAPESADKLLAEF 685


>gi|237809017|ref|YP_002893457.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
 gi|237501278|gb|ACQ93871.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
          Length = 797

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 278/534 (52%), Gaps = 76/534 (14%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+           
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQQEEMNAV 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYN S+++L TL +  T N      N   Y+  FSDN K I   F+
Sbjct: 69  ELDDEPLKAASGYVFYNISKWTLKTLHAAATNNQQILLQNFNEYLNGFSDNVKEIVGRFN 128

Query: 120 FSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRV-----------MSNIYEHLIRRF 166
             S I  + +  +L  + + F    I L P    D             M  ++E LIR+F
Sbjct: 129 LKSQIRHMAEKQVLLDVVEKFISPNINLTPQECEDASGNKLPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----LKDQLPLTMTIYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + +     K P +     +  +G+E+  ET+A+C + M+I+   +DP      NI+ GST
Sbjct: 245 IEE-----KYPAVGASRDIHLYGKEINDETYAICKSDMMIKG--NDP-----ANIKIGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL------------- 328
           LS D F+  RF + LSNPP+GK W  ++  + KE       RF   L             
Sbjct: 293 LSTDEFSHMRFDFMLSNPPYGKSWASEQKNI-KEGTEVIDPRFKVQLTDYWGKVDAKGSD 351

Query: 329 --PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             P+ SDG +LFLM + +K++ P NG  G R A V + S LF G AG GES IRR+L+EN
Sbjct: 352 ATPRSSDGQLLFLMEMVSKMKAPVNGTIGSRIASVHNGSSLFTGDAGGGESNIRRYLIEN 411

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D++EAIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K   
Sbjct: 412 DMLEAIVQLPNNLFYNTGITTYIWLLNNNKPERRKGKVQLIDASQLFRKLRKNLGNKNCE 471

Query: 444 INDDQRRQILDIY-----VSRE-------NGKFSRMLDYRTFGYRRIKVLRPLR 485
              +   +I+  Y     V R+        G  S++ +   FGY ++ V RP R
Sbjct: 472 FAPEHIAEIMQTYLEFNEVERQLDANGDAIGLASKIFNNEDFGYFKVTVERPDR 525



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 59/96 (61%), Gaps = 11/96 (11%)

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE++     ++L + E+VP  +SI  YF+ EV PHV +A+++         E  ++G EI
Sbjct: 700 GEFVTYESSSDLRDTESVPLKQSIYQYFLDEVKPHVAEAWLNM--------ESVKIGCEI 751

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P RKL+ +  E+  +E Q   L+ ++
Sbjct: 752 SFNKYFYRHKPLRKLEAVAQEIIDLEKQADGLIAQI 787


>gi|229829855|ref|ZP_04455924.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM
           14600]
 gi|229791153|gb|EEP27267.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM
           14600]
          Length = 595

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 259/492 (52%), Gaps = 38/492 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IW  A  L+G +K  ++G VILP  +++R    L PT   V   Y       +  E 
Sbjct: 18  ANLIWNVANSLFGAYKPHEYGLVILPMAVIKRFHDCLLPTHDKVLATYEKIKHLAVK-EG 76

Query: 72  FVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           F++ A  GY FYN S ++   L +   N + N ESYI  FSDN   I  +  F + I R+
Sbjct: 77  FLRTATGGYRFYNVSPFTFERLKADPENIKANFESYINGFSDNVIDILANMGFFNQIDRM 136

Query: 128 EKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
             AG+LY++  +F     ++ PD +    M  ++E+L++RF     E A    T RD+++
Sbjct: 137 NDAGVLYQVISDFCEDSADMSPDKISAVDMGYVFENLVQRFSESYDEEAGAHFTSRDIIY 196

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L    D    +SP   +T+YD   GT   LT     +    +  +I    + +GQ
Sbjct: 197 LMCDMLTMEADFSSSDSPA--KTVYDMAMGTSQMLTCMEERIKSLDAEAQI----ICYGQ 250

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ P T  +  A +LIR  + D       N++ G TL+ D F G  F YC+SNPPFG  W
Sbjct: 251 EINPFTFGIAKADVLIRGGDPD-------NMRFGDTLNDDKFKGYTFDYCISNPPFGIDW 303

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +++   VEKEHK G+ GRFG GLP  SDG MLF+++   KL+      GR AI+ + S L
Sbjct: 304 KREAADVEKEHKKGDAGRFGVGLPAKSDGQMLFMLNGIAKLK----DTGRMAIIQNGSSL 359

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI++  K    R +V LI
Sbjct: 360 FTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYVWIITKDKPVTHREQVLLI 419

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF-------------SRMLDYR 471
           +A+  +   R+  G KR  I +  R  I+  Y   ++  +             S+ LD  
Sbjct: 420 DASGCYEQRRSPIGNKRVDITEVCRDLIVKAYSDYDSKTYEKKIDSNTAIVVKSKRLDSI 479

Query: 472 TFGYRRIKVLRP 483
           + GY +I V  P
Sbjct: 480 SLGYNKITVESP 491



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 17/139 (12%)

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD----PVTDVNGEWIPDTNLTEYEN 592
           ++ I SN A  +K K   S  + + N    + P+ D    P+    G+ + DT+  + E 
Sbjct: 460 EKKIDSNTAIVVKSKRLDSISLGY-NKITVESPQLDDDGEPILK-KGKKVADTSKRDTET 517

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E +  YF REV P+ P A+I        DK   +VGYEI F + FY+Y    +++ 
Sbjct: 518 VPLDEDMDVYFEREVLPYRPGAWI--------DKSKTKVGYEIPFTKTFYEY---LEMES 566

Query: 653 IDAELKGVEAQIATLLEEM 671
            D   K +E    +L++++
Sbjct: 567 ADEIAKRIEEHEHSLMQKL 585


>gi|254228172|ref|ZP_04921601.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio sp. Ex25]
 gi|262394005|ref|YP_003285859.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. Ex25]
 gi|151939245|gb|EDN58074.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio sp. Ex25]
 gi|262337599|gb|ACY51394.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. Ex25]
          Length = 794

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 189/530 (35%), Positives = 285/530 (53%), Gaps = 72/530 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+          +
Sbjct: 9   LISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEMNET 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D       +GY FYNTS+++L TL ST T N      N E Y+  FSDN K I E F+
Sbjct: 69  ELDDAPLCAASGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSDNVKEIVECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIRRF 166
             + I  +    +L  + + F    I L P    D        +SN     ++E LIR+F
Sbjct: 129 LKAQIRHMAGKDVLLDVVEKFVSPYINLTPTVKEDPEGNKLPALSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT+  N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDELPLSITVYDPACGSGGMLTETQNF 244

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           V +     K P     +  +G+E+  ET+A+C + M+I+   ++P+     NI+ GSTLS
Sbjct: 245 VEE-----KYPASNRDIYLYGKEINDETYAICKSDMMIKG--NNPQ-----NIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F+ +RF + LSNPP+GK W  ++  + K+ K+   GRF                +P+
Sbjct: 293 TDEFSSERFDFMLSNPPYGKSWASEQKHI-KDGKDVVDGRFKVKLKDYWGVESEQDAIPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P     G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQVSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPESRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLR 485
              +I+  Y+  ++            G  +++   + FGY ++ + RP R
Sbjct: 472 HIAKIVSTYLDNKSVERAIDEKGDSVGIAAQVFKNQDFGYYKVNIERPDR 521



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 55/87 (63%), Gaps = 8/87 (9%)

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E+VP  +SI  YF+ EV PHV +A+++         E  ++GYEI+FN++FY++
Sbjct: 705 SDLRDSESVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRH 756

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R + ++  ++  +E +   L+ ++
Sbjct: 757 KPLRSMDEVAKDIIALEQKAEGLISDI 783


>gi|114047282|ref|YP_737832.1| N-6 DNA methylase [Shewanella sp. MR-7]
 gi|113888724|gb|ABI42775.1| N-6 DNA methylase [Shewanella sp. MR-7]
          Length = 829

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 191/552 (34%), Positives = 286/552 (51%), Gaps = 74/552 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 9   LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E F+
Sbjct: 69  ELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L  +TV D             M  ++E LIR+F
Sbjct: 129 LKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + +   +   P +     +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GST
Sbjct: 245 IEE--KYPNDPSVKTKRDVYLYGKEINDETYAICKSDMMIKG--NNP-----ENIKVGST 295

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLP 329
           LS D F   RF + LSNPP+GK W  ++       D ++   K      +G        P
Sbjct: 296 LSTDEFAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATP 355

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END++
Sbjct: 356 RSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDML 415

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           +AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 416 DAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAP 475

Query: 447 DQRRQILDIYVSREN-----------------GKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
           +   +I D Y++  +                 G  S++     FGY ++ + RP R    
Sbjct: 476 EHITEITDTYLACVDVERALDATAPEGMGDPVGIASKVFSNEDFGYYKVTIERPDRRRAK 535

Query: 490 LDKTGLARLEAD 501
             +  +A L  D
Sbjct: 536 FTQEAIAPLRFD 547



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 56/88 (63%), Gaps = 8/88 (9%)

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           +++L + E+VP  +SI  YF+ EV PHV +A+I+         +  ++GYEI+FN++FY+
Sbjct: 733 NSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINL--------DTVKIGYEISFNKYFYR 784

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ++P R L D+  ++  +E +   L+ ++
Sbjct: 785 HKPLRSLIDVATDIINLEQKAEGLIAQI 812


>gi|120597917|ref|YP_962491.1| N-6 DNA methylase [Shewanella sp. W3-18-1]
 gi|120558010|gb|ABM23937.1| N-6 DNA methylase [Shewanella sp. W3-18-1]
          Length = 807

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 282/542 (52%), Gaps = 64/542 (11%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 9   LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E F+
Sbjct: 69  ELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L  +TV D             M  ++E LIR+F
Sbjct: 129 LKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +   +      L  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS D 
Sbjct: 245 IEEKYPNDSRDVYL--YGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLSTDE 295

Query: 287 FTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKISDG 334
           F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ SDG
Sbjct: 296 FAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDG 355

Query: 335 SMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++AIV 
Sbjct: 356 QLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQ 415

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQ 451
           LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K          +
Sbjct: 416 LPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITE 475

Query: 452 ILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           I D Y++               G  S++     FGY ++ + RP R      +  +A L 
Sbjct: 476 ITDTYLACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLR 535

Query: 500 AD 501
            D
Sbjct: 536 FD 537



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 61/96 (63%), Gaps = 11/96 (11%)

Query: 579 GEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I    +++L + E+VP  +SI  YF+ EV PHV +A+I+         +  ++GYEI
Sbjct: 710 GEFITYETNSDLRDTESVPLKQSIYLYFLDEVKPHVDEAWINL--------DTVKIGYEI 761

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P R L+++  ++  +E +   L+ ++
Sbjct: 762 SFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQI 797


>gi|264677661|ref|YP_003277567.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208173|gb|ACY32271.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 545

 Score =  286 bits (732), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 173/467 (37%), Positives = 273/467 (58%), Gaps = 49/467 (10%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG----- 64
           + +FIW  A+D   D F    +  VILP  +LRRL+C LEP++ AV E+ + F       
Sbjct: 9   IVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEE-VRFQREDAEM 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           +++D     + +GY FYNTS ++L +L    +    NL++Y+  FSDN K I E FD  +
Sbjct: 68  ADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLDGFSDNVKEIVEKFDLRN 127

Query: 123 TIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSN-----IYEHLIRRFGSE 169
            I ++ ++ +L+ + + F   E++        PD      +SN     ++E LIR+F  E
Sbjct: 128 QIRKMAQSDVLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFNEE 187

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPR+V+ L T L+  P     K+      T+YDP CG+GG LT++ + + D
Sbjct: 188 NNEEAGEHFTPREVIKLMTNLVFIP----VKDQLPNPLTIYDPACGSGGMLTESQDFITD 243

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K    +  +G+E+ PET+A+C + M+I+   +DP     +NI+ GSTL+ D F+G
Sbjct: 244 PEGEIKAKVGVFLYGKEVNPETYAICKSDMMIK--GNDP-----ENIKFGSTLATDDFSG 296

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEK-----EHK--------NGELGRFGPGLPKISDGSM 336
            RF + L+NPP+GK W+ D+ ++ +     +H+        + E   F P +P+ SDG +
Sbjct: 297 TRFDFMLTNPPYGKSWKSDQKSIVEGKDVIDHRFQVNLSDYSEEDFDFYPAIPRSSDGQL 356

Query: 337 LFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           LF+M +  K++   +   G R A V + S LF G AGSGES IRR ++END +EAI+ LP
Sbjct: 357 LFMMEMVGKMKRLGDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAIIQLP 416

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440
            +LF+ T I TY+W+LSN K ++R+GKVQLI+A++L+  +R N G+K
Sbjct: 417 NNLFYNTGITTYVWVLSNNKADQRKGKVQLIDASNLYQKLRKNLGEK 463


>gi|257095816|ref|YP_003169457.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048340|gb|ACV37528.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 769

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 268/497 (53%), Gaps = 30/497 (6%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           + +FIW  A+D+  D FK   +  VILP  ++RR++  LEPT+ +V +  + L   G   
Sbjct: 9   IVSFIWGIADDVLRDLFKRGKYPDVILPMCVIRRMDAVLEPTKQSVLDTRRMLDAAGITE 68

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSST 123
              +    AG +FYNTS ++L  L S  ++  L    E Y+  FS N + I ++F F + 
Sbjct: 69  QRAALCDAAGQAFYNTSRFTLRDLKSRGSQQRLLADFEDYLNGFSANVQDILDNFKFRNQ 128

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +  L +A  +  +   F    I+L P  + +  M  ++E L+R+F  E +E A +  TPR
Sbjct: 129 LQTLSRADAIGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEAGEHWTPR 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V L   L+  P ++  +    +   LYD  CGTGG LT A   +    +        +
Sbjct: 189 DAVRLMANLVFRPIESAIRSGTYL---LYDCACGTGGMLTVAEETLTAIAAGRGQQVRCL 245

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE+ PET+AVC A ML++        D      + STL+ D F  + F + L+NPP+
Sbjct: 246 LYGQEINPETYAVCKADMLLK--GEGESADHIVGGAEWSTLAHDAFPAREFDFMLANPPY 303

Query: 302 GKKWEKDKDAVEKE-----------HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           GK W+KD +A+  +           H+  EL      + + SDG MLFL ++A+K+    
Sbjct: 304 GKSWKKDLEAMGGKDGMRDPRFKVMHQGEELSL----VTRSSDGQMLFLANMASKMNGQS 359

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T IATY+W+L
Sbjct: 360 ALGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGIATYIWVL 419

Query: 411 SNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           SNRK   R+G+VQLI+A+  +  +R N GKK   ++ +   +I   ++       S++  
Sbjct: 420 SNRKPAHRQGRVQLIDASQWFKPLRKNLGKKNCELSPEDIERISRSFLDFAETPESKIFP 479

Query: 470 YRTFGYRRIKVLRPLRM 486
              FGY ++ V RPLR+
Sbjct: 480 NAAFGYWKVTVERPLRL 496



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 10/86 (11%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD +L + E VP LE   I  +  REV P+ PDA+I +        +  ++GYEI+F
Sbjct: 677 EYEPDADLRDTEQVPLLEDGGIAAFIRREVLPYTPDAWIKE--------DATKIGYEISF 728

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQ 663
            R FY+ QP R L++I A++  +E +
Sbjct: 729 TRHFYKPQPLRTLEEISADILAIEKE 754


>gi|284041086|ref|YP_003391016.1| N-6 DNA methylase [Spirosoma linguale DSM 74]
 gi|283820379|gb|ADB42217.1| N-6 DNA methylase [Spirosoma linguale DSM 74]
          Length = 787

 Score =  283 bits (725), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 284/551 (51%), Gaps = 67/551 (12%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----A 61
           S   L +FIW  A+D   D +    +  VILP  +LRRL+  LEP +  V E+       
Sbjct: 5   SHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPGKDEVMEEVRFQREE 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIF 115
            G + +D+      +GY FYNTS ++L  L  T T N      N   Y+  FSDN K I 
Sbjct: 65  AGFTELDVNGLQAASGYVFYNTSVWTLQKLHDTATNNQQLLEANFTDYLDGFSDNVKEII 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSG--IELHP-----------DTVPDRVMSNIYEHL 162
             F+  S +  +    +L  + + F+   I L P             + +  M  ++E L
Sbjct: 125 RKFNLKSQVKHMANKDVLLDVLEKFTSPTINLTPFEKLDPEGRKLPALSNLGMGYVFEEL 184

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F  E +E A +  TPR+V+ L T ++ +P     K+    + T+YDP CG+GG LT+
Sbjct: 185 IRKFNEENNEEAGEHFTPREVIDLMTHVIFEP----IKDRLPPVMTIYDPACGSGGMLTE 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + N + D     +    +   G+E+  ET+A+C + M+I+   +DP     +NI+ GSTL
Sbjct: 241 SQNFIKDEDGLIRAKGDVYLFGKEINDETYAICKSDMMIKG--NDP-----ENIKNGSTL 293

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGEL---GRF-------------G 325
           S D F GK+F + LSNPP+GK W     A E+ H K+G      RF              
Sbjct: 294 STDEFAGKQFDFMLSNPPYGKSW-----ASEQRHIKDGNEVIDSRFRIKLKNYWGVEEDA 348

Query: 326 PGLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             +P+ SDG +LFLM + +K++       G R A V + S LF G AG GES IRR+L+E
Sbjct: 349 DAIPRSSDGQLLFLMEMVSKIKPLAASPSGSRIASVHNGSSLFTGDAGGGESNIRRYLIE 408

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRR 442
           NDL++AI+ LP +LF+ T I TY+W+L+N K   R+GKVQLI+A  L+  +R N G K  
Sbjct: 409 NDLLDAIIQLPNNLFYNTGITTYIWVLTNSKPANRQGKVQLIDAGPLYRKLRKNLGAKNC 468

Query: 443 IINDDQRRQILDIY-----VSR--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            +  +   +I+  Y     V R  ++G  S++ D   FGY ++ + RP R+        +
Sbjct: 469 ELAPEHITEIVKTYQDLAIVDRTGDDGLASKVFDNADFGYYKVTIERPKRLKAQFSAERI 528

Query: 496 ARLEADITWRK 506
           A L  D   R+
Sbjct: 529 AELRFDNKLRE 539



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 59/92 (64%), Gaps = 8/92 (8%)

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
           E+  +++L + ENVP  E I DYF+REV PHV +A+I        + +  ++GYEI+FN+
Sbjct: 700 EYETESDLRDTENVPLKEDIHDYFLREVKPHVSEAWI--------NLDATKIGYEISFNK 751

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FY+++P R +  + A++  +E +   L++ +
Sbjct: 752 YFYRHKPLRDIAAVSADILQLEDESEGLIKAI 783


>gi|298529186|ref|ZP_07016589.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510622|gb|EFI34525.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 786

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 192/534 (35%), Positives = 282/534 (52%), Gaps = 52/534 (9%)

Query: 5   TGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLA 61
            G    +ANFIW  A+D+  D +    +  VILP T++RRL+  LEPT+  V +  + L 
Sbjct: 3   NGQLNWIANFIWNIADDVLRDVYVRGKYRDVILPMTVIRRLDACLEPTKQDVLKMSEQLD 62

Query: 62  FGGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKA 113
             G    + +  + AG    ++FYN S ++L  L S      L    E+Y+  FS N + 
Sbjct: 63  KAGVANKVGALSRAAGADANHAFYNDSPFTLRDLQSRGKAQQLKADFETYLDGFSPNVQE 122

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPD------------RVMSNIY 159
           I E F F + I  L  A  L  + + F    I L P  V D              M  I+
Sbjct: 123 ILEKFKFRNQIPTLVDADALGPLIEKFLNPDINLCPHPVRDVEGNVRLPGLDNHAMGTIF 182

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIRRF  E +E A +  TPRDVV L   L+  P   +  +       +YD  CGTGG 
Sbjct: 183 EELIRRFNEENNEEAGEHFTPRDVVKLMANLIFWP---IADDIRSATYRVYDGACGTGGM 239

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT A + +    S       +   GQE+ PET+A+  A +L++          ++N++ G
Sbjct: 240 LTVAEDTLQGLASSRGKNVSIHLFGQEVNPETYAISKADLLLK-----GEGQGAENMKFG 294

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-----------EHKNGELGRFGPGL 328
           STLS+D F    F + LSNPP+GK W+ D D +             +H   EL      +
Sbjct: 295 STLSRDAFPSGEFDFMLSNPPYGKSWKMDLDRMGGKKDMSDHRFVVQHDGDELSL----I 350

Query: 329 PKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            + SDG +LFL++   K+  P      G R A V + S LF G AGSGES IRRW++END
Sbjct: 351 TRSSDGQLLFLVNKLTKMVEPTERSPLGSRIAEVHNGSSLFTGDAGSGESNIRRWIIEND 410

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
            +EAI+ALP ++F+ T IATY+W+L+N K EER+GKVQLI+ATD++  +R N G K   +
Sbjct: 411 WLEAIIALPLNMFYNTGIATYIWVLTNAKPEERKGKVQLIDATDIYQPLRKNMGAKNCEL 470

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +++Q +QI +++++ E  + S++     FGY +I+V RPLR+   L +  +  L
Sbjct: 471 SEEQIKQICEMFLAFEETEQSKIFPNAAFGYWKIRVERPLRLHSQLTRKAIQGL 524



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 12/96 (12%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           +P  DP   +  E+ PD+ L + E VP LE   I+ +F REV PHVP A+ID+       
Sbjct: 685 NPEGDPGLVL--EYEPDSELRDSEQVPLLEEGGIEAFFRREVLPHVPGAWIDE------- 735

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
               ++GYEI+F R FY+    R L++I  +L  ++
Sbjct: 736 -SATKIGYEISFTRHFYKPPELRPLEEIKVDLLALQ 770


>gi|322379477|ref|ZP_08053843.1| Putative type I restriction-modification system HsdM subunit
           [Helicobacter suis HS1]
 gi|322380458|ref|ZP_08054657.1| type I restriction enzyme M protein [Helicobacter suis HS5]
 gi|321147103|gb|EFX41804.1| type I restriction enzyme M protein [Helicobacter suis HS5]
 gi|321148084|gb|EFX42618.1| Putative type I restriction-modification system HsdM subunit
           [Helicobacter suis HS1]
          Length = 636

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 207/681 (30%), Positives = 342/681 (50%), Gaps = 90/681 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-----AFGGS 65
           + NFIW  A  L   +K   +  VILP T++RRL+  LEPT+  V  KY           
Sbjct: 24  IINFIWDIANLLRDHYKRGKYRDVILPMTVIRRLDAILEPTKQKVLAKYKECKEKGLLEK 83

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            I+       +G+ FYN S+++L TL     N ++N ++Y+ SFS   K I + F+F + 
Sbjct: 84  GIEAPLLCDASGFKFYNHSQFTLKTLLDDPENLKDNFKNYLNSFSATIKDILKKFNFETE 143

Query: 124 IARLEKAGLLYKICKNFSG--IELHPDTVPDRV------MSNIYEHLIRRFGSEVSEGAE 175
           +  LE+AG+L+K+   F    +     +  D+       M  ++E LIR+F  E +E A 
Sbjct: 144 LDTLEQAGVLFKLVDKFCSNKVNFSIKSTSDKPGLSNLGMGYVFEELIRKFNEENNEEAG 203

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD++ L   L+  P      E    +  +YD  CG+GG LT++   + +     +
Sbjct: 204 EHFTPRDIISLMATLIFKP----ISEQLNSVYFVYDNACGSGGMLTESKAFIKNLQPTAE 259

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I      +GQE+ PET+A+C A MLI+    +P     +NI+ GSTLS D F   +F + 
Sbjct: 260 INL----YGQEVNPETYAICKADMLIKG--ENP-----ENIKFGSTLSDDQFKDLKFDFM 308

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFGK +  +++  + +       RF  GL  + DG M+FL+++ +K++  P  G R
Sbjct: 309 LTNPPFGKSYGNEQEKCKND------SRFAVGLTGVGDGQMMFLLNMISKMKDTP-LGSR 361

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A + + S LFN  + SG+  IR  ++  D +EAI+ALPTDLF+ T I T++WIL+NRK 
Sbjct: 362 IASIHNGSALFN--SDSGQVAIRSHIITKDYLEAIIALPTDLFYNTQIPTFIWILNNRKE 419

Query: 416 EERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             ++ KVQLI+AT  +  + ++ GKK + ++ +    I +++  +  G  + +LD    G
Sbjct: 420 AHKKQKVQLIDATSYFEPMAKSLGKKSKRLSQEHIDAIFELFSKQIKGPQAVVLDCEDLG 479

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           Y +  V+       + D + L   EA    ++L  L  +       P ++ I+       
Sbjct: 480 YTKFNVISLKSSQEVKDDSELINKEA--ILKRLEQLEAN------PPKLEPIF------- 524

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP-RADPVTDVNGEWIPDTNLTEYENV 593
                    + KT            F+NA     P + +P   ++ +     N +E E +
Sbjct: 525 --------KDEKT------------FLNALNIPIPKKTNPEGKISKDLKILLNKSE-EKI 563

Query: 594 PYLESIQDYF---VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
           P  E    YF   + ++ P +        FI  K + I +VGYEI FN+ FY+   ++  
Sbjct: 564 PLKEDKDTYFLELLEQIRPQIG-------FI--KGQSI-KVGYEILFNQHFYRPTEAKSA 613

Query: 651 QDIDAELKGVEAQIATLLEEM 671
           + I  E++ +E +I  LL+E+
Sbjct: 614 RTIQQEIRELEGEIQELLDEI 634


>gi|238920395|ref|YP_002933910.1| hypothetical protein NT01EI_2505 [Edwardsiella ictaluri 93-146]
 gi|238869964|gb|ACR69675.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 802

 Score =  283 bits (723), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 277/533 (51%), Gaps = 74/533 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYLAFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E    +       
Sbjct: 9   LVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEMNAV 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +GY FYN S+++L +L +  T N      N+  Y+  FSDN   I   F+
Sbjct: 69  ELDEEPLKAASGYVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVNCFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIRRF 166
             + I  +    +L  + + F    I L P+ + D             M  ++E LIR+F
Sbjct: 129 LRAQIRHMADKQVLLDVIEKFVSPYINLTPNDIEDPEGNKLPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++   
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDQLPLTMTIYDPACGSGGMLTESQGF 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+      +   +  +G+E+  ET+A+C + M+IR   +DP      NI+ GSTLS D 
Sbjct: 245 IAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRG--NDP-----ANIKVGSTLSTDE 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGE--------------LGRFGP----G 327
           F+  RF + LSNPP+GK W     A E++H K+G                G   P     
Sbjct: 298 FSHMRFDFMLSNPPYGKSW-----ASEQKHIKDGNEVIDSRFKVKLADYWGVVAPKDCDA 352

Query: 328 LPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + NK++ P     G R A V + S LF G AGSGES IRR+L+END
Sbjct: 353 TPRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIEND 412

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
           ++EAIV LP +LF+ T I TY+W+L+N K   R+GKVQLI+A+ L+  +R N G+K   +
Sbjct: 413 MLEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCEL 472

Query: 445 NDDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLR 485
           + +   +I    ++  N            G  S++     FGY ++ V RP R
Sbjct: 473 SPEHIEEITQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDR 525



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 58/96 (60%), Gaps = 11/96 (11%)

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE++     ++L + E+VP  +SI  YF+ EV PHV +A+++         E  ++GYE+
Sbjct: 705 GEFVTYESSSDLRDSESVPLTQSIYQYFLDEVKPHVAEAWLNM--------ESVKIGYEV 756

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++  R L+ +  E+  +E Q   L+ ++
Sbjct: 757 SFNKYFYRHKSLRSLETVAQEILTLEQQADGLIAQI 792


>gi|88811657|ref|ZP_01126911.1| type I restriction-modification system, M subunit [Nitrococcus
           mobilis Nb-231]
 gi|88791048|gb|EAR22161.1| type I restriction-modification system, M subunit [Nitrococcus
           mobilis Nb-231]
          Length = 767

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 272/508 (53%), Gaps = 28/508 (5%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + +FIW  A+D+  D F+   +  VILP  ++RR++  LEPT+  V +       + I  
Sbjct: 9   IVSFIWGIADDVLRDLFRRGKYPDVILPMCVIRRMDAVLEPTKQTVLDTKKMLDEAQITE 68

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSST 123
           +  +    AG +FYNTS+++L  L S  ++  L    E Y+  FS N + I E+F F + 
Sbjct: 69  QRAALCDAAGQAFYNTSKFTLRDLTSRGSQQQLLADFEDYLNGFSANVQDILENFKFRNQ 128

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +  L ++  L  +   F    I+L P  + +  M  ++E L+R+F  E +E A +  TPR
Sbjct: 129 LPTLSRSDSLGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEAGEHWTPR 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V L   L+  P +A  K    +   LYD  CGTGG LT A   +A   +        +
Sbjct: 189 DAVRLMANLVFLPIEAEIKSGTYL---LYDCACGTGGMLTVAEETLAAIAAKRGQQVTTL 245

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE+ PET+AVC + ML++        D      + STLS D +  + F + L+NPP+
Sbjct: 246 LYGQEINPETYAVCKSDMLLKG--EGESADHIVGGAEWSTLSHDAYPAQEFDFMLANPPY 303

Query: 302 GKKWEKDKDAVE----------KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           GK W+KD +A+           K   NGE       + + SDG MLFL ++A+K+     
Sbjct: 304 GKSWKKDLEAMGGKTGMRDPRFKVMHNGEELSL---VTRSSDGQMLFLANMASKMNDKSI 360

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T IATY+W+LS
Sbjct: 361 LGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGIATYVWVLS 420

Query: 412 NRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           N+K   R G+VQLI+A+  +  +R N GKK   ++ +   +I   ++  +    S++   
Sbjct: 421 NKKPAHRTGQVQLIDASRWFKPLRKNLGKKNCELSTEDIERISRTFLDFKETPESKIFPN 480

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARL 498
             FGY ++ V RPLR+   L +  +  L
Sbjct: 481 AAFGYWKVTVERPLRLHSQLSRKAIETL 508



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 10/91 (10%)

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD+ L + E VP LE   I+ +  REV P+ PDA+I +        +  ++GYE++F R 
Sbjct: 679 PDSELRDTEQVPLLEEGGIEAFIRREVLPYTPDAWIKE--------DATKIGYEVSFTRH 730

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FY+ QP R L++I A++  +E +   LL+++
Sbjct: 731 FYKPQPLRTLEEIRADILAIEKEAEGLLDDI 761


>gi|319775045|ref|YP_004137533.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|329123047|ref|ZP_08251618.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|317449636|emb|CBY85842.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|327471978|gb|EGF17418.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 790

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 199/547 (36%), Positives = 284/547 (51%), Gaps = 70/547 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHP----DTVPDRV-------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    DT  +++       M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDTEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFVP 474

Query: 447 DQRRQILDIYV-----SREN-------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +   +I   Y+     +RE        G  S++ D + FGY ++ + RP R S       
Sbjct: 475 EHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVEN 534

Query: 495 LARLEAD 501
           +A L  D
Sbjct: 535 IASLRFD 541



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 25/138 (18%)

Query: 545 AKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI---PDTNLTEYENV 593
           AKTLK+K ++      ++A   R   +AD + D         GE+I     ++L + E++
Sbjct: 664 AKTLKLKPNE------LDALCQRYQCQADGLADFGYYTTGKAGEYILYETSSDLRDSESI 717

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R L ++
Sbjct: 718 PLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRHKPLRSLAEV 769

Query: 654 DAELKGVEAQIATLLEEM 671
             ++  +E Q   L+ E+
Sbjct: 770 AQDILALEKQADGLISEI 787


>gi|71276007|ref|ZP_00652289.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71899047|ref|ZP_00681212.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71163240|gb|EAO12960.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71731160|gb|EAO33226.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 793

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 180/515 (34%), Positives = 277/515 (53%), Gaps = 52/515 (10%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +++FIW  A+D   D +    +  VILPFT+LRRL+  LE T+ AV E+       N+  
Sbjct: 14  ISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVAE 73

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
           +  +    AG +FYN SE++L+ L ++      R++  +Y+  FS + + I   F+F + 
Sbjct: 74  QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQ 133

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  + ++F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 134 IQKLVDSHVLGYLIEDFLNPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 193

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT A   +  
Sbjct: 194 NNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGTGGMLTVAEEALHA 250

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 251 LAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AQNIVGGADKSTLSADQ 305

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-------------LPKISD 333
           F  + F + +SNPP+GK W+ D      E   G+ G   P              L + SD
Sbjct: 306 FHSRAFDFMISNPPYGKSWKTDL-----ERMGGKKGFSDPRFIVSHGGDSEFKLLTRSSD 360

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+AL
Sbjct: 361 GQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIAL 420

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQI 452
           P ++F+ T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   +      +I
Sbjct: 421 PLNIFYNTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI 480

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           LD+Y+ + +    S+  D + FGY +I + RPLR+
Sbjct: 481 LDLYLGQTQEAAQSKWFDTQDFGYWKITIERPLRL 515



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD+ L + E VP  E   I  +F REV PH PDA+I             +VGYEI+F
Sbjct: 704 EYEPDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWIAT--------NKTQVGYEISF 755

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +R+FY+  P R L +I A++  +E Q   LL ++
Sbjct: 756 SRYFYKPVPLRTLAEIRADILVLEQQTEGLLHKI 789


>gi|225076788|ref|ZP_03719987.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens
           NRL30031/H210]
 gi|224951886|gb|EEG33095.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens
           NRL30031/H210]
          Length = 793

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 197/550 (35%), Positives = 285/550 (51%), Gaps = 76/550 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEVRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N + I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIR 164
           F     I  +    +L  + + F    I L P    D        +SN     ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPDGNKLPALSNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P  I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKNQIPAAI-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           N +      + +P   V       G+E+  ET+A+C + M+I+        D  +NI+ G
Sbjct: 243 NFIE---QKYPLPESQVERSIFLFGKEINDETYAICKSDMMIKG-------DNPENIKVG 292

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---------- 329
           STL+ D F G+ F + LSNPP+GK W  D+ A  K+ K     RF   LP          
Sbjct: 293 STLATDSFQGEHFDFMLSNPPYGKNWSNDQ-AYIKDGKEVIDSRFKVSLPDYWGNEETLN 351

Query: 330 ---KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                SDG +LFLM + +K++ P +   G R A V + S LF G AGSGES IRR ++EN
Sbjct: 352 ATPSASDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEN 411

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRI 443
           DL+EAIV LP  LF+ T+I TY+W+LSN K E R+GKVQLI+A+ L+  +R + G+K   
Sbjct: 412 DLLEAIVQLPNKLFYNTDITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKKLGEKNCE 471

Query: 444 INDDQRRQILDIYV-----SREN-------GKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
              +   +I   Y+     +RE        G  S++ D + FGY ++ + RP R S    
Sbjct: 472 FAPEHIAEITQNYLDFSAKARETDGQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFT 531

Query: 492 KTGLARLEAD 501
              +A L  D
Sbjct: 532 AQNIASLRFD 541



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 25/154 (16%)

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI- 582
           A S+  ES     AKTLK+K ++      ++A   R   +AD + D         GE++ 
Sbjct: 651 AVSWYNESAAKVIAKTLKLKPNE------LDALCQRYQCQADELADFGYYATGKAGEYLQ 704

Query: 583 --PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
               ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++
Sbjct: 705 YETSSDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKY 756

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           FY+++P R L ++  ++  +E Q   L+ E+  E
Sbjct: 757 FYRHKPLRSLAEVAQDILALEKQADGLISEILGE 790


>gi|71900229|ref|ZP_00682367.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71730002|gb|EAO32095.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 819

 Score =  280 bits (717), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 279/511 (54%), Gaps = 44/511 (8%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +++FIW  A+D   D +    +  VILPFT+LRRL+  LE T+ AV E+       N+  
Sbjct: 40  ISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVE 99

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
           +  +    AG +FYN SE++L+ L ++      R++  +Y+  FS + + I   F+F + 
Sbjct: 100 QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQ 159

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  + ++F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 160 IQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 219

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT A   +  
Sbjct: 220 NNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGTGGMLTVAEEALHA 276

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 277 LAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSADQ 331

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK---------NGELGRFGPGLPKISDGSML 337
           F  + F + +SNPP+GK W+ D D +  + K         +G    F   L + SDG ++
Sbjct: 332 FPSRAFDFMISNPPYGKSWKTDLDRMGGKKKFSDPRFIVSHGGDSEFKL-LTRSSDGQLM 390

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++
Sbjct: 391 FQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNI 450

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+N+K + RRGKVQLI+A+  +  + RN GKK   +      +ILD+Y
Sbjct: 451 FYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLY 510

Query: 457 VSR-ENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           + + +    S+  D + FGY +I + RPLR+
Sbjct: 511 LGQTQEAAQSKWFDTQDFGYLKITIERPLRL 541



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 10/96 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD+ L + E VP  E   I  +F REV PH PDA+I        DK   ++GYEI+F
Sbjct: 730 EYEPDSALRDTEQVPLQEPGGIDAFFAREVLPHAPDAWI------ATDKT--QIGYEISF 781

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            R+FY+  P R L +I A++  +E Q   LL ++ +
Sbjct: 782 ARYFYKPVPLRTLAEIRADILALEQQTEGLLHKIVS 817


>gi|163788851|ref|ZP_02183296.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159876088|gb|EDP70147.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 603

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 295/570 (51%), Gaps = 47/570 (8%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           T S   + NFIW  A+D L   +    +  VILP T+LRRL+ ALE ++  V + +  F 
Sbjct: 5   TQSLQPIINFIWTVADDVLINKYLENQYQDVILPMTVLRRLDLALEKSKDKVLKTHNEFK 64

Query: 64  GS--NID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
               N+D  L S    +G +FYNTS Y++  L     N  +N   Y+  +S+N + I   
Sbjct: 65  SKMDNLDGLLTSETHGSGLAFYNTSPYTMKKLLDDPKNIDSNFLDYLNGYSENVQDIISK 124

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           F F + +  LE  G+ + + + F    +EL P+ +    M  ++E LIRRF  + +  A 
Sbjct: 125 FKFRNQLETLENGGITFSLIEKFCNPKVELRPEKISPMAMGYMFEDLIRRFNEKTNAAAG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TPR+++ L T L+  P     +    ++   YDP  G+G  LT +  +  +     K
Sbjct: 185 RHFTPREIIELMTHLVYLPVKEKIQNGTFLV---YDPCAGSGAMLTQSKKYATNPDGEIK 241

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHY 294
                  +GQE   E +A C + ML++    DP +     I+ GSTLS+  F    +F++
Sbjct: 242 SKATFHLYGQENTGEMYATCKSDMLLKN--EDPDK-----IKFGSTLSEYGFEPNLKFNF 294

Query: 295 CLSNPPFGKKWEKD-KDAVEKEHKNGEL--GRFGPGLPKI-------------SDGSMLF 338
            L+NPP+G  W++D K      +K  ++   RF   +                +DG ++F
Sbjct: 295 MLTNPPYGTSWKEDLKSLTNSSNKKQDIVDTRFNLKIKNFKGELEEQTLASRSNDGQLMF 354

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H+ +K++ P +GG R A V + S LF G AGSGES IR+++LENDL+E I+ LP D+F
Sbjct: 355 MLHMLSKMKDPKDGGSRIASVHNGSALFTGDAGSGESGIRQYILENDLLECIIQLPNDMF 414

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE-GKKRRIINDDQRRQILD 454
           + T IATY+WILSN K E+R+GKVQLINA+   +    +R   G KR  +N +    I +
Sbjct: 415 YNTGIATYIWILSNVKEEKRKGKVQLINASSKDEFSKKMRKPLGDKRVELNPNHILDIQN 474

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLR---MSFILDKTGLARLEADITWRKLSPLH 511
           +Y   E  ++S++ +   FGY +I V +P R      + DK G  + + D+   +  P+ 
Sbjct: 475 LYFDFEENQYSKIFNNEDFGYYQITVHQPERDEDGKIVTDKKGNPKSDKDLKDSENVPMT 534

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           +    DI     +++ PY     + K+ +K
Sbjct: 535 E----DIDTYFKREVIPYAPDAWYDKKKMK 560



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
           +D     VTD  G    D +L + ENVP  E I  YF REV P+ PDA+ DK  +     
Sbjct: 505 RDEDGKIVTDKKGNPKSDKDLKDSENVPMTEDIDTYFKREVIPYAPDAWYDKKKM----- 559

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              +VGY I   + FY+Y   R L  I  E+  +E +   LL+E+
Sbjct: 560 ---KVGYNIPLTKHFYKYDELRNLNIITNEILSLEKETDGLLKEI 601


>gi|259910158|ref|YP_002650514.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965780|emb|CAX57312.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96]
 gi|283480263|emb|CAY76179.1| type I restriction-modification system DNA methylase [Erwinia
           pyrifoliae DSM 12163]
          Length = 793

 Score =  279 bits (714), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 239/792 (30%), Positives = 377/792 (47%), Gaps = 148/792 (18%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP + AV    + +      +
Sbjct: 9   LISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVKFQKEELRAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D    +  +GY FYNTS+++L+ L    T N      N E Y+  FSDN K I   F+
Sbjct: 69  ELDDAPLMAASGYVFYNTSKWTLNLLFKAATNNQQILLANFEEYLLGFSDNVKEIVACFN 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDR------VMSN-----IYEHLIRRF 166
             + I  +    +L  + + F    I L    V D        +SN     ++E LIR+F
Sbjct: 129 LQAQIRHMASKQVLLDVVEKFVSPYINLTHKAVEDPEGYTMPALSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIDLMTHLVFDP----VKDKLPLTMTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +       K P     +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS
Sbjct: 245 I-----EAKYPSSNRDIYLYGKEINDETYAICKSDMMIKG--NNP-----ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFGP-----GLPKI 331
            D F  +RF + LSNPP+GK W  ++       D ++   K       G        P+ 
Sbjct: 293 TDEFAAERFDFMLSNPPYGKSWASEQKYIKDGGDVIDPRFKVRLQDYSGKEETVDATPRS 352

Query: 332 SDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END+++A
Sbjct: 353 SDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLDA 412

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           IV LP +LF+ T I TY+W+L+N K ++R+GKVQLI+A+ L+  +R N G K      + 
Sbjct: 413 IVQLPNNLFYNTGITTYIWLLNNNKPQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPEH 472

Query: 449 RRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLR----------- 485
             +I   Y++               G  S++     FGY ++ V RP R           
Sbjct: 473 IAEIAQTYLACAGVERKLDANHDAVGIASKVFSNDDFGYYKVTVERPDRRKARFTREAIQ 532

Query: 486 -----------MSF--------ILDKTGLARLE-ADITWR-----KLSPLHQSFWLDILK 520
                      M++        I +K  LA +E A + W       L+   +S  LD+  
Sbjct: 533 PLRFDKQLAEVMAWLYGEHGDKIYEKGFLASVEKATLAWCAERDISLNTKAKSKLLDVKN 592

Query: 521 PM-MQQIY--------PYGWAE----SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
            + +Q++Y          G  E    +  K  ++    K  K+K S +   A +NA    
Sbjct: 593 WLSLQRVYHTAERLMATLGGGEFDDFNLFKAQVE-QVLKAEKIKLSAAEKNAIVNAVSWY 651

Query: 568 DPRADPVTD----VNGEWIPDTNL---TEYENVP----YLESIQD-YFVREVSPHVPDA- 614
           D  A  V +    +NG+ + D       E E++P    Y    +D Y + + S  + D  
Sbjct: 652 DETAARVINKTVKLNGDKLQDLLARLECEAEDLPDFGFYPSGKKDEYIIYDSSADLRDTE 711

Query: 615 ------YIDKIFIDEKDKEIG---------RVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
                  I + F+DE    +          ++GYEI+FN++FY  +P R L+++  ++  
Sbjct: 712 SVPLKQSIYQYFLDEVKPHVAEAWINLDSVKIGYEISFNKYFYHPKPLRSLEEVAQDIIK 771

Query: 660 VEAQIATLLEEM 671
           +E Q   L+ ++
Sbjct: 772 LEQQSEGLIAQI 783


>gi|319896546|ref|YP_004134739.1| type i restriction-modification system, methyltransferase subunit
           [Haemophilus influenzae F3031]
 gi|317432048|emb|CBY80397.1| putative type I restriction-modification system,methyltransferase
           subunit [Haemophilus influenzae F3031]
          Length = 790

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 280/547 (51%), Gaps = 70/547 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------- 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   LP             
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL+
Sbjct: 355 RSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFVP 474

Query: 447 DQRRQILDIYV-----SREN-------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +   +I   Y+     +RE        G  S++ D + FGY ++ + RP R S       
Sbjct: 475 EHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVEN 534

Query: 495 LARLEAD 501
           +A L  D
Sbjct: 535 IASLRFD 541



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 25/138 (18%)

Query: 545 AKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN-------GEWI---PDTNLTEYENV 593
           AKTLK+K ++      ++A   R   +AD + D         GE+I     ++L + E++
Sbjct: 664 AKTLKLKPNE------LDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRDSESI 717

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R L ++
Sbjct: 718 PLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRHKPLRSLAEV 769

Query: 654 DAELKGVEAQIATLLEEM 671
             ++  +E Q   L+ E+
Sbjct: 770 AQDILALEKQADGLISEI 787


>gi|304310801|ref|YP_003810399.1| Type I restriction-modification system DNA methylase [gamma
           proteobacterium HdN1]
 gi|301796534|emb|CBL44743.1| Type I restriction-modification system DNA methylase [gamma
           proteobacterium HdN1]
          Length = 808

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 185/534 (34%), Positives = 281/534 (52%), Gaps = 70/534 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEPT+ AV E+          +
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRYQKEEMQAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E   + +GY FYN S+++L++L +T T N      N + Y+  FS N + I E F+
Sbjct: 69  ELDEEPLKEASGYVFYNVSKWTLTSLHNTATNNRQILLANFDEYLNGFSANVQEIIERFE 128

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSN-----IYEHLIRRF 166
             S I  +    +L  + + F   +++        PD      +SN     ++E LIR+F
Sbjct: 129 LKSKIQHMANKDVLLDVVEKFISPKINLTPVAAEDPDGYKLPALSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+S  +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDSIPLTLTVYDPACGSGGMLTESQNF 244

Query: 227 VAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           + +        K    +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS
Sbjct: 245 IEEKYPADPSAKSQRDIYLYGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLS 297

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKI 331
            D F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ 
Sbjct: 298 TDEFASLRFDFMLSNPPYGKSWASEQKYIKDGSDVIDPRFKVKLKDYWGNIEECDATPRS 357

Query: 332 SDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+++END+++A
Sbjct: 358 SDGQLLFLMEMVSKMKDPGAGTNGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDMLDA 417

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           IV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      + 
Sbjct: 418 IVQLPNNLFYNTGITTYIWLLNNNKPESRKGKVQLIDASLLYRKLRKNLGNKNCEFAPEH 477

Query: 449 RRQILDIY-----VSRE------------NGKFSRMLDYRTFGYRRIKVLRPLR 485
             QI   Y     + RE             G  S++     FGY ++ + RP R
Sbjct: 478 IEQITRAYLDCAAIERELDGSLPEGMGDPIGIASQVFRNEDFGYYKVTIERPDR 531



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 8/75 (10%)

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           +SI  YF+ EV PHV +++I+   +        ++GYEI+FN++FY+++P R L+D+  +
Sbjct: 732 QSIHQYFLDEVKPHVEESWINLDSV--------KIGYEISFNKYFYRHKPLRSLEDVAKD 783

Query: 657 LKGVEAQIATLLEEM 671
           +  +E +   L+ ++
Sbjct: 784 IINLEQKAEGLIAQI 798


>gi|158337899|ref|YP_001519075.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
 gi|158308140|gb|ABW29757.1| type I restriction-modification system, M subunit, putative
           [Acaryochloris marina MBIC11017]
          Length = 807

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 285/538 (52%), Gaps = 70/538 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60
             S   L +FIW  A+D   D +    +  VILP  +LRRL+C LE T+ AV E+     
Sbjct: 3   AASQNKLISFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLEETKDAVMEEVRFQR 62

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKA 113
            + G + ++  +    +GY FYNTS+++L  L  T + N      N ++Y+  FS+N K 
Sbjct: 63  ESVGLTELESGALKDASGYVFYNTSDWTLKRLVETASNNRQILEANFKAYLDGFSENVKE 122

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSN-----IYE 160
           I + F     I R+ +A +L  + + F+   ++        PD      +SN     ++E
Sbjct: 123 IIDSFYLRDQIKRMVQADVLLDVLEKFTSPYINFSPTQGEDPDGRKLAGLSNLGMGYVFE 182

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LIR+F  E +E A +  TPR+V+ L T LL  P     KE    +  +YD  CG+GG L
Sbjct: 183 ELIRKFNEENNEEAGEHFTPREVIKLMTHLLFMP----VKEQLPPVMLIYDGACGSGGML 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T++ N ++D     K    +  +G+E+ PET+ +C + M+I+        +  +NI+ GS
Sbjct: 239 TESQNFISDPEGGIKSDAQVYLYGKEVNPETYGICKSDMMIKG-------NSPENIKLGS 291

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKD-------KDAVE-------KEHKNGELGRFGP 326
           TL+ D F G RF + L NPP+GK +  D       KD ++       K+  + E      
Sbjct: 292 TLAMDEFAGMRFDFMLENPPYGKSYAADQKHILDGKDVLDERFLLPLKDFWDEE--SLEK 349

Query: 327 GLPKISDGSMLFLMHLANK---LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             P+ SDG +LFLM + +K   L+  P  G R A V + S LF G AGSGES IRR+++E
Sbjct: 350 ATPRSSDGQLLFLMDMVSKMKPLDQSP-AGSRIASVHNGSSLFTGDAGSGESNIRRYIIE 408

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRR 442
           ND +EAIV LP ++F+ T I+TY+W+LSN K  ER+GKVQLI+ ++L+  +R N G K  
Sbjct: 409 NDWLEAIVQLPQNMFYNTGISTYVWVLSNNKAPERQGKVQLIDRSELYRKLRKNLGAKNC 468

Query: 443 IINDDQRRQILDIYVSRENG--------------KFSRMLDYRTFGYRRIKVLRPLRM 486
               +Q  +I  +Y+ R +                 S++ D + FG+ ++ V RPLR+
Sbjct: 469 EFAPEQIEKITHLYLDRVHQPTLPPSEDRELPPPPISKVFDNQDFGFYKVTVERPLRL 526



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 20/107 (18%)

Query: 579 GEWI---PDTNLTEYENVPY-----LE----SIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
           G+WI    D+ L + E+VP      LE     I  YF+ EV PHV DA+I    +D    
Sbjct: 702 GQWIEYETDSELRDTESVPLNYGQALERGTAQIHGYFLAEVRPHVEDAWIA---LDST-- 756

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              ++GYEINFN++FYQ++P RKL+ +  E+  +E +   LL+ + +
Sbjct: 757 ---KIGYEINFNKYFYQHKPLRKLETVVEEILELEKKTEGLLKRLVS 800


>gi|311694469|gb|ADP97342.1| type I restriction-modification system, methyltransferase subunit
           [marine bacterium HP15]
          Length = 807

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 279/545 (51%), Gaps = 70/545 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  L PT+ AV E+          +
Sbjct: 9   LVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLMPTKEAVLEEVRFQKEEMDAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D       +GY FYN S+++L++L +T T N      N E Y+  FS N + I E F+
Sbjct: 69  ELDPAPLKAASGYVFYNVSKWTLTSLYNTATNNRQILLANFEEYLKGFSPNVQEIIECFE 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTV--PDRV---------MSNIYEHLIRRF 166
             S I  +    +L  + + F    I L P     PD           M  ++E LIR+F
Sbjct: 129 LKSKIQHMAHKDVLLDVVEKFVSPKINLTPKDALDPDGYKLPGLSNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDDLPLTLTVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           + +     K P     +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTLS
Sbjct: 245 IEE-----KYPSDNRDIYLYGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKI 331
            D F   RF + LSNPP+GK W  ++       D ++   K      +G        P+ 
Sbjct: 293 TDEFASDRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKIQLKDYWGNEEDCDATPRS 352

Query: 332 SDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END +EA
Sbjct: 353 SDGQLLFLMEMVSKMKDPATGSKGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLEA 412

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           IV LP +LF+ T I TY+W+L+N K   RRGKVQLI+A+ L+  +R N G K      D 
Sbjct: 413 IVQLPNNLFYNTGITTYIWVLNNNKPANRRGKVQLIDASLLYRKLRKNLGNKNCEFAPDH 472

Query: 449 RRQILDIY-----VSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
             QI   Y     + RE        G  S++     FGY ++ + RP R      +  +A
Sbjct: 473 IEQITRTYLDCTAIERELDANNDPVGIASQVFRNEDFGYHKVTIERPDRRKAQFSEERIA 532

Query: 497 RLEAD 501
            L  D
Sbjct: 533 GLRFD 537



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 8/75 (10%)

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           + I  YF+ EV PHV +A+I+   +D       ++GYEI+FN++FY+++P R L+++  +
Sbjct: 731 QGIHGYFLAEVKPHVEEAWIN---LDST-----KIGYEISFNKYFYRHKPLRSLEEVAQD 782

Query: 657 LKGVEAQIATLLEEM 671
           +  +E +   L+ ++
Sbjct: 783 IISLEQKAEGLIAQI 797


>gi|330941785|gb|EGH44534.1| N-6 DNA methylase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 795

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 285/511 (55%), Gaps = 44/511 (8%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +++FIW  A+D   D +    +  V+LPFT+LRRL+  LE T++AV E+       N+  
Sbjct: 15  ISDFIWSIADDRLRDVYVRGKYRDVVLPFTVLRRLDAVLESTKNAVLERKKLLDAHNVAE 74

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
           +  +    A  +FYN SE++L+ L ++      R++  +Y+  FS N + I   F+F + 
Sbjct: 75  QDGALRDAAKQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQ 134

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP-----DRV---------MSNIYEHLIRRFGSE 169
           I +L  + +L  +  +F   E++   +P     DR+         M  ++E LIRRF  E
Sbjct: 135 IQKLVDSHVLGYLIDDFLDPEINLAPLPVKDADDRIKLPALDNHGMGTVFEELIRRFNEE 194

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT A + + +
Sbjct: 195 NNEEAGEHFTPRDVVQLMAKLLFLPVAQSIESS---TYSLYDGSCGTGGMLTVAEDALHE 251

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 252 LADQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSADQ 306

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPGLPKI------SDGSMLF 338
           F  + F + +SNPP+GK W+ D + +  +K+  +        G P+       SDG ++F
Sbjct: 307 FRSREFDFMISNPPYGKSWKTDLERMGGKKDFSDPRFIVSHAGEPEFKLITRSSDGQLMF 366

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI++LP ++F
Sbjct: 367 LVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIISLPLNIF 426

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI--RNEGKKRRIINDDQRRQILDIY 456
           + T I+TY+W+L+N+K+  RRGKVQLI+A+  W+    RN G+K   +++     IL++Y
Sbjct: 427 YNTGISTYIWVLANKKSAARRGKVQLIDASQ-WSQPLRRNLGRKNCELSEADIACILELY 485

Query: 457 VSR-ENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           +   ++   S+ LD + FGY +I V RPLR+
Sbjct: 486 LGEAQDTAHSKWLDTQDFGYWKISVERPLRL 516



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 10/94 (10%)

Query: 580 EWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+  DT+L + E VP  E   I  +F REV PH PDA+I +        E  ++GYEI+F
Sbjct: 706 EYESDTDLRDSEQVPLKEQGGIDAFFAREVLPHAPDAWIAR--------EKTQIGYEISF 757

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            R+FY+  P R L +I A++  +E Q   LL ++
Sbjct: 758 ARYFYKPTPLRTLAEIRADILALEQQSEGLLHKI 791


>gi|53802448|ref|YP_112812.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
 gi|53756209|gb|AAU90500.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
          Length = 790

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 278/524 (53%), Gaps = 46/524 (8%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +++FIW  A++   D +    +  VILPFT+LRRL+  LE T+  V E+      +N+  
Sbjct: 15  ISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEETKQKVLERKRFLDKNNVAE 74

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
           +  +    AG +FYN SE++L+ L +++     R +  +Y+  FS N + I   F F   
Sbjct: 75  QDGALRMAAGQAFYNVSEFTLAKLKASSQGQRLREDFIAYLDGFSPNVQEILTKFKFRDQ 134

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I  L  A +L  + ++F   E++   +P              +  M  ++E LIRRF  E
Sbjct: 135 IQTLVDAHVLGYLIEDFLDPEINLSPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNEE 194

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   L+  P   +  +       LYD  CGTGG LT A   + +
Sbjct: 195 NNEEAGEHFTPRDVVRLMAKLMFMP---VADQIQSGTYLLYDGACGTGGMLTVAEETLRE 251

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                     +   GQE+ PET+A+C A +L++  E D    +     + STLS D F  
Sbjct: 252 LAEEQGKEVSIHLFGQEINPETYAICKADLLLKG-EGDEAEHIVGGADK-STLSNDQFRS 309

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------GLPKI------SDGSM 336
           + F + +SNPP+GK W+ D D +      G+ G   P       G P+       SDG +
Sbjct: 310 REFDFMISNPPYGKSWKTDLDRM-----GGKKGFNDPRFIVSHSGDPEFKLITRSSDGQL 364

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +FL++   K++     G R AIV + S LF G AG GES IRRW+LEND  EAI+ALP +
Sbjct: 365 MFLVNKLQKMKQHSPLGSRIAIVHNGSALFTGDAGQGESNIRRWILENDWCEAIIALPLN 424

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDI 455
           +F+ T IATY+W+L+NRK + R+G+VQLI+AT  +  + RN GKK   +++   ++ILD+
Sbjct: 425 IFYNTGIATYIWVLTNRKAKHRKGRVQLIDATRWFQPLRRNLGKKNCELSEADIQRILDL 484

Query: 456 YVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           Y+ + +N    +  D   FGY +I V RPLR+   L +  +  L
Sbjct: 485 YLGQPQNTPECKWFDNADFGYWKITVERPLRLKSQLTRRAIETL 528



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 10/95 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD +L + E VP  E   I  +F REV PH PDA+I       +DK   ++GYEI+F
Sbjct: 701 EYEPDADLRDTEQVPLKEPGGIDAFFRREVLPHAPDAWI------ARDKT--QIGYEISF 752

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            R+FY+  P R L +I A++  +E Q   LL+++ 
Sbjct: 753 ARYFYKPAPLRTLDEIRADILRLEQQTEGLLQKIV 787


>gi|28199932|ref|NP_780246.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182682686|ref|YP_001830846.1| N-6 DNA methylase [Xylella fastidiosa M23]
 gi|28058063|gb|AAO29895.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182632796|gb|ACB93572.1| N-6 DNA methylase [Xylella fastidiosa M23]
 gi|307578970|gb|ADN62939.1| N-6 DNA methylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 793

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 178/515 (34%), Positives = 279/515 (54%), Gaps = 52/515 (10%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +++FIW  A++   D +    +  VILPFT+LRRL+  LE T+ AV E+       N+  
Sbjct: 14  ISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVE 73

Query: 70  E--SFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
           +  +    AG +FYN SE++L+ L ++      R++  +Y+  FS + + I   F+F + 
Sbjct: 74  QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQ 133

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  + ++F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 134 IQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 193

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT A   +  
Sbjct: 194 NNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGTGGMLTVAEEALHA 250

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 251 LAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSADQ 305

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG----RFGPG---------LPKISD 333
           F  + F + +SNPP+GK W+ D D +      G+ G    RF            L + SD
Sbjct: 306 FPSRAFDFMISNPPYGKSWKTDLDRM-----GGKKGFSDRRFIVSHGGDPEFKLLTRSSD 360

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+AL
Sbjct: 361 GQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIAL 420

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQI 452
           P ++F+ T IATY+W+L+N+K + RRGKVQLI+A+  +  + RN GKK   +      +I
Sbjct: 421 PLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARI 480

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           LD+Y+ + +    S+  D + FGY ++ + RPLR+
Sbjct: 481 LDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRL 515



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE--SIQDY 602
           AK  K+KA + F   F  A+     +   +     E+ PD+ L + E VP  E   I  +
Sbjct: 673 AKRSKLKAGECFEPGFDGAYLETVGKDRFMV----EYEPDSALRDTEQVPLQEPGGIDAF 728

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F REV PH PDA+I        DK   ++GYEI+F R+FY+  P R L DI A++  +E 
Sbjct: 729 FAREVLPHAPDAWI------ATDKT--QIGYEISFARYFYKPVPLRTLADIRADILALEQ 780

Query: 663 QIATLLEEM 671
           Q   LL ++
Sbjct: 781 QTEGLLHKI 789


>gi|15597931|ref|NP_251425.1| restriction-modification system protein [Pseudomonas aeruginosa
           PAO1]
 gi|9948812|gb|AAG06123.1|AE004701_6 probable restriction-modification system protein [Pseudomonas
           aeruginosa PAO1]
          Length = 792

 Score =  276 bits (706), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 285/526 (54%), Gaps = 46/526 (8%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +A+FIW  A+D   D +    +  VILPFT+LRR++  LEPT+ AV E+      + +  
Sbjct: 14  VADFIWNIADDRLRDVYVRGKYRDVILPFTVLRRIDAVLEPTKQAVLERKKLLDSAKVAN 73

Query: 70  ESFVKVAGYS--FYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
           ++    A     FYN SE++L+ L ++      R +  +Y+  FS N + +   F+F + 
Sbjct: 74  QNGALQAAAGQAFYNVSEFTLAKLKASAAGQRLREDFIAYLDGFSPNVQEVLTKFNFRNQ 133

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  A +L  + ++F   E++   +P              +  M  ++E LIRRF  E
Sbjct: 134 IQKLVDAHILGYLIEDFLDPEVNLSPLPVKDADGRTKLPALDNHGMGTVFEELIRRFNEE 193

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT A   + +
Sbjct: 194 NNEEAGEHFTPRDVVQLMAKLLFLPVADRIESS---TYSLYDGSCGTGGMLTVAEEALKE 250

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 251 LAEQHGKDVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSADQ 305

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLF 338
           F  + F + +SNPP+GK W+ D + +  +KE  +        G      + + SDG ++F
Sbjct: 306 FRSREFDFMISNPPYGKSWKTDLERMGGKKEFSDPRFIVNHGGDAEFKLITRSSDGQLMF 365

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            ++  +K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F
Sbjct: 366 QVNKLSKMKHDTALGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIF 425

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T IATY+W+L+N+K E R+G+VQLI+A+  +  + RN GKK   + +   R+ILD+Y+
Sbjct: 426 YNTGIATYIWVLANKKAEHRKGRVQLIDASQWFAPLRRNLGKKNCELAEGDIRRILDLYL 485

Query: 458 -----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                +  +   S+  D + FGY +I V RPLR+   L  + +  L
Sbjct: 486 GEAQETDSSTDQSKWFDTQDFGYWKITVERPLRLKSQLKTSAIDTL 531



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 16/130 (12%)

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI-PDTNLTEYENVPYLE--SIQD 601
           AK  K+KAS +FI +F   +  +  +   V      W  PD +L + E VP  E   I  
Sbjct: 672 AKRHKLKASDAFIPSFDGRYFIETGKHREVV-----WYEPDADLRDTEQVPLKELGGIDA 726

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           +F REV PH PDA+ID         E  ++GYEI+F R+FY+  P R L DI A++  +E
Sbjct: 727 FFEREVLPHAPDAWIDG--------EKTQIGYEISFARYFYKPTPLRPLDDIRADILKLE 778

Query: 662 AQIATLLEEM 671
            Q   LL ++
Sbjct: 779 QQTEGLLHKI 788


>gi|281355059|ref|ZP_06241553.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548]
 gi|281317939|gb|EFB01959.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548]
          Length = 674

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 216/705 (30%), Positives = 342/705 (48%), Gaps = 88/705 (12%)

Query: 11  LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L NF+W  A D L  + +  D+ K+ILPF +LRRL+  LE T+  V +     G   +  
Sbjct: 9   LFNFLWNIANDVLVQNVEKGDYKKIILPFIVLRRLDLLLEQTKETVLDFVNDEGFRELPP 68

Query: 70  ES----FVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFS 121
           ES       V GY FYNTS ++++ L +    T    N E+Y+  +S + + I   FD  
Sbjct: 69  ESQSEQLYVVTGYPFYNTSPFTMNLLKAETDQTRLAQNFEAYLDGYSYHVQDIIRKFDLK 128

Query: 122 STIARLEKAGLLYKICKNFS---------------GIELHPDTVPDRVMSNIYEHLIRRF 166
            ++ RL  +  L  +   F+               G E +P  + +  M  ++E L+RRF
Sbjct: 129 HSLERLFNSPCLGMLISKFTDENINLGIEPVLDDNGNEKYP-GLDNHTMGTLFEELLRRF 187

Query: 167 GSE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             +  V+E  E + TPRD V L   + + P     K+       +YD  CGTGG L+ + 
Sbjct: 188 NEDFSVTEAGEHY-TPRDYVRLLADVAIKPVVGKIKKG---TYEIYDAACGTGGILSVSE 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----G 279
           +   + GS  +       +GQEL+P+T+A+C A ++I   ++ P       +++     G
Sbjct: 244 DTFKELGSRIETNI----YGQELQPDTYAICKAEIMISG-KNKPLDYTYGGVKRECFAFG 298

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKD--AVEKEHKNGELGRFGP--------GLP 329
           ST+S++   GK F +C+SNPPFG  W+KD +      + K  +L RF P         LP
Sbjct: 299 STISQNGHEGKLFDFCISNPPFGTPWKKDLENWGYANKDKITDL-RFRPLVGDETLDFLP 357

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            I D  MLFL +  ++++     G R   + + S LF G AG G S +RR ++ENDL+EA
Sbjct: 358 DIGDPQMLFLANNLSRMKSDTALGTRIVEIHNGSSLFTGDAGQGPSNLRRHIMENDLLEA 417

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           I+A+P ++F+ T I T++W+++NRK   R+GKVQLI+AT + T +R N G K    N + 
Sbjct: 418 IIAMPENMFYNTGIGTFVWVVTNRKEARRKGKVQLIDATAIKTPLRKNLGNKNCETNAED 477

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           R  I+ +       + S++ D   FGY  I V RPLR+   LD         D++  KL 
Sbjct: 478 RAAIVKLLTDFAENERSKIFDNDEFGYWSITVERPLRLKLNLD--------PDLSEAKLK 529

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              +    D +  +        W              K   +K ++ +I           
Sbjct: 530 ESEKKEIADAIAALPADAPLTDW-----DRCSPLLNLKKTLLKKARPYITETC------- 577

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
           P A+ V     E  PD  L +YE VP  Y   I  +   EV P+ PDAY+D     E   
Sbjct: 578 PEAEVV-----EGEPDPKLRDYEQVPLKYEGGIAAFMANEVLPYAPDAYLD-----ESKT 627

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EIG   YE++F ++FY+      ++ + A+++ +E +   +L+ +
Sbjct: 628 EIG---YELSFTKYFYKPVELPSIESLAADIEAIEQRTDGILKAI 669


>gi|258545846|ref|ZP_05706080.1| type I restriction-modification system, M subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258518862|gb|EEV87721.1| type I restriction-modification system, M subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 793

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 179/510 (35%), Positives = 277/510 (54%), Gaps = 42/510 (8%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSNI 67
           +++FIW  A++   D +    +  VILPFT+LRRL+  LE T+  V  R+++L       
Sbjct: 15  ISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDVVLERKRFLDTHKVAE 74

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
              +    AG +FYN SE++L+ L  ++     R++  +Y+  FS N + I   F+F + 
Sbjct: 75  QDGALRMAAGQAFYNVSEFTLAKLKGSSQGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQ 134

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  +  +F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 135 IQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDVDGRIKLPALDNHGMGTVFEELIRRFNED 194

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD TCGTGG LT A   + +
Sbjct: 195 NNEEAGEHFTPRDVVQLMAKLLFLPVADRIESS---TYSLYDGTCGTGGMLTVAEEALHE 251

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 252 LAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSNDQ 306

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLF 338
           F  + F + +SNPP+GK W+ D + +  +KE  +        G      + + SDG ++F
Sbjct: 307 FRSREFDFMISNPPYGKSWKTDLERMGGKKEFNDPRFIVSHAGNNEFKLITRSSDGQLMF 366

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            ++   K++     G R A+V + S LF G AG GES IRRW+LEND  EAI+ALP ++F
Sbjct: 367 QVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWCEAIIALPLNIF 426

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   ++    ++ILD+Y+
Sbjct: 427 YNTGIATYIWMLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELSAGDIQRILDLYL 486

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRM 486
              +    S+  D   FGY +I V RPLR+
Sbjct: 487 GEAQETAESKWFDTEDFGYWKITVERPLRL 516



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 10/94 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD+ L + E VP  E   I  +F REV PH PDA+I        DK   ++GYEI+F
Sbjct: 703 EYEPDSELRDTEQVPLKEPGGIDAFFAREVLPHAPDAWI------ATDKT--QIGYEISF 754

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            R+FY+  P R L +I A++  +E Q   LL ++
Sbjct: 755 ARYFYKPVPLRTLAEIRADILALEQQSEGLLHKI 788


>gi|317132744|ref|YP_004092058.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470723|gb|ADU27327.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 689

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/481 (35%), Positives = 261/481 (54%), Gaps = 54/481 (11%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  GTGG L+  + +  +  +      ++  +GQEL  +T+A+C +  +I+     
Sbjct: 5   VLIDPAAGTGGMLSAGIEYATELNNQ----ALIEVYGQELNEKTYAICKSDTMIKG---- 56

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 KNI  G++ ++D    + FHY L NPPFG +W+K +  +  E++ G  GRFG G
Sbjct: 57  ---KGYKNIHLGNSFTEDALPHETFHYMLCNPPFGVEWKKYEKFIRDENERGFAGRFGAG 113

Query: 328 LPKISDGSMLFLMHLANKL---ELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           LP++SDGS+LFL H+ +K+   +    G  G R AIV + SPLF G AGSGESEIRRW++
Sbjct: 114 LPRVSDGSLLFLQHMISKMMEYDEKAEGLTGCRLAIVFNGSPLFTGDAGSGESEIRRWII 173

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKR 441
           EN  +E I+ALP  LF+ T I TY+WI++NRK   R+GK+QLI+ T  +  +R   G+KR
Sbjct: 174 ENGWLETIIALPDQLFYNTGILTYVWIVTNRKKGVRKGKIQLIDGTSFFERMRKPLGEKR 233

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF---------ILDK 492
           ++I+++Q+ ++  IY     G+F ++ D   F Y ++ V RPLR++F         I ++
Sbjct: 234 KLISEEQKDELTRIYGKFVEGEFCKIFDEDDFAYWKVTVERPLRLNFQASAERIKRIREQ 293

Query: 493 TGLARLEADITWRKLSPL-----------HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           T  A L    T RK  P             Q   L  +  +   +     AE F K   K
Sbjct: 294 TAFANLA---TSRKRKPAEHDAEVAEGKKQQEAALAAVATLDGAVLYKNRAE-FSKLLHK 349

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
           + +   L VKA    + A +     KD  AD  TD  G   PDT+L + E +P+ + I  
Sbjct: 350 AFKKAGLDVKA--PLLKAVLAGLSEKDETADICTDAKGNPEPDTDLRDTEQIPFKDDIAA 407

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  REV P+ PDA++D    + K K+    GYEI F RFF  ++   +L + D  L+ ++
Sbjct: 408 YVQREVLPYAPDAWVD----ESKTKK----GYEIPFARFFSSFE---ELGNADGTLRKIQ 456

Query: 662 A 662
           +
Sbjct: 457 S 457


>gi|86152066|ref|ZP_01070278.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840851|gb|EAQ58101.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 562

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 181/523 (34%), Positives = 290/523 (55%), Gaps = 41/523 (7%)

Query: 19  AEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV---K 74
           A+DL  D +    +  VILP T++RR++  LEPT+  V + Y  +     +LES +   +
Sbjct: 2   ADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENLESLLGGKQ 61

Query: 75  VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
                F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +  LE++ +
Sbjct: 62  GNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQLDTLEESNI 121

Query: 133 LYKICKNFS------GIELHPD---TVPDRVMSN-----IYEHLIRRFGSEVSEGAEDFM 178
           L+ + + F       GIE   D    V  + +SN     ++E LIR+F  E +E A +  
Sbjct: 122 LFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+++ L T L+  P     K+   +I   YD  CG+GG LT++   + D     +   
Sbjct: 182 TPREIIELMTHLVFLPVKEQIKQGTWLI---YDNACGSGGMLTESKEFITDPEGLIQSKA 238

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE+ PET+A+C A MLI+    +P R     I+ GSTLS D     +F + LSN
Sbjct: 239 NIYLYGQEINPETYAICKADMLIKG--ENPER-----IKFGSTLSNDQ-QNLQFDFMLSN 290

Query: 299 PPFGKKWEKDKD--AVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           PP+GK WE D+    VEK+  N      RF  G+   SDG M+FL+++ +K++     G 
Sbjct: 291 PPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFLLNMLSKMKFDTPLGS 350

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A V + S LFN  + SG   IR+ ++END +EAIVALPT++F+ T I T++WI++N+K
Sbjct: 351 RIASVHNGSSLFN--SDSGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKK 408

Query: 415 TEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +E ++GKVQLIN T  + ++ ++   G+K+  +  +   +I +++++  + K  ++LD  
Sbjct: 409 SEHKKGKVQLINTTNEEYFSKMKKSLGQKQNEMTKEHIEKITELFLNFISSKDCKILDNE 468

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQS 513
            FGY +I + +P  + F+ D    A+L + D    KL  L Q+
Sbjct: 469 DFGYTKIIIEKPKSVEFLKDDEKFAKLKDKDKILEKLQELEQN 511


>gi|38505784|ref|NP_942403.1| type I restriction-modification system M subunit [Synechocystis sp.
           PCC 6803]
 gi|38423808|dbj|BAD02017.1| type I restriction-modification system M subunit [Synechocystis sp.
           PCC 6803]
          Length = 499

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 283/542 (52%), Gaps = 87/542 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  I+E LIRRF  E ++ A +  TPRDVV L   L+      L +    ++   YD  C
Sbjct: 18  MGTIFEELIRRFNEENNDEAGEHFTPRDVVKLMADLIFLSIGDLIESGTYLV---YDGAC 74

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTGG LT A   +A+   +      +   GQE++PET+A+  A +L++   ++     ++
Sbjct: 75  GTGGMLTVAEERLAELAQNQGKEVSIHLFGQEVQPETYAISKADLLLKGEGAE-----AE 129

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG------RFG--- 325
           N++ GSTLS D F  + F + LSNPP+GK W+ D   +E+    G++       R G   
Sbjct: 130 NMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTD---LERLGGKGDIKDPRFVTRHGDEA 186

Query: 326 --PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + + SDG ++FL++   K++     G R A V + S LF G AG GES IRRW++E
Sbjct: 187 DYKMITRSSDGQLMFLVNKLAKMKHNTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIE 246

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRR 442
           ND +E I+ALP ++F+ T IATY+W+LSNRK EERRGKVQLI+ T+ +  + RN GKK  
Sbjct: 247 NDWLETIIALPENIFYNTGIATYIWLLSNRKNEERRGKVQLIDGTEWYVPLRRNLGKKNC 306

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            ++++Q + I+D+ V+    + S++   + FGY ++ V RPLR+             AD 
Sbjct: 307 ELSEEQIQTIVDLVVNPRETEKSKIFPNQAFGYWKVTVDRPLRVE-----------GAD- 354

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
                                Q++Y     ++F  E   + E             V  I 
Sbjct: 355 --------------------PQRVYKAAEIKAFKSEGRVTEEG------------VPIIK 382

Query: 563 AFGRKDPRADPV-----TDVNG-----EWIPDTNLTEYENVPYLE--SIQDYFVREVSPH 610
              +K  R DP+      ++ G     E+ PD+NL + E +P LE   I+ +F REV P+
Sbjct: 383 KIHKKGTRPDPIHGLFEVEIGGKPCVVEYEPDSNLRDSEQIPLLEDGGIEAFFRREVLPY 442

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
            PDA+I      E  K   ++GYE++F R FY+  P R L +I A++  +E +   LLE+
Sbjct: 443 TPDAWI------EASKT--QIGYEVSFTRHFYKPVPMRTLDEIKADIYALEQETEGLLEQ 494

Query: 671 MA 672
           + 
Sbjct: 495 IV 496


>gi|309780965|ref|ZP_07675704.1| type I restriction-modification system, M subunit [Ralstonia sp.
           5_7_47FAA]
 gi|330824639|ref|YP_004387942.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|308920268|gb|EFP65926.1| type I restriction-modification system, M subunit [Ralstonia sp.
           5_7_47FAA]
 gi|329310011|gb|AEB84426.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 794

 Score =  274 bits (700), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 281/511 (54%), Gaps = 44/511 (8%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSNI 67
           +++FIW  A+D   D +    +  VILPFT+LRRL+  LE T+ AV  R+K+L       
Sbjct: 15  ISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDTHKVAE 74

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
              +    AG +FYN SE++L+ L ++      R++  +Y+  FS N + I   F+F + 
Sbjct: 75  QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQ 134

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  +  +F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 135 IQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 194

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P       S     +LYD +CGTGG LT A   + +
Sbjct: 195 NNEEAGEHFTPRDVVQLMAKLLFLPVADRIDSS---TYSLYDGSCGTGGMLTVAEEALHE 251

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 252 LAEEHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSADQ 306

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLF 338
           F  + F + +SNPP+GK W+ D + +  +KE  +        G      L + SDG ++F
Sbjct: 307 FRSREFDFMISNPPYGKSWKTDLERMGGKKEFNDPRFIVSHAGNAEFKLLTRSSDGQLMF 366

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            ++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F
Sbjct: 367 QVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIF 426

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   + D    +ILD+Y+
Sbjct: 427 YNTGIATYIWVLANKKAEARRGKVQLIDASGWFQPLRRNLGKKNCELADADIARILDLYL 486

Query: 458 --SRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
             ++E  + S+  D + FGY +I V RPLR+
Sbjct: 487 GEAQETAQ-SKWFDTQDFGYWKITVERPLRL 516



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 17/153 (11%)

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
           P  + IY    A S+  E+     AK  K+KA + F   F  A+     +   +     E
Sbjct: 653 PEKKAIYK---AVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMV----E 705

Query: 581 WIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           + PD+ L + E VP  E   I  +F REV PH PDA+I        DK   ++GYEI+F 
Sbjct: 706 YEPDSELRDTEQVPLKEPGGIDAFFAREVLPHAPDAWI------ATDKT--QIGYEISFA 757

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           R+FY+  P R L +I A++  +E Q   LL ++
Sbjct: 758 RYFYKPAPLRTLAEIRADILALEQQSEGLLHKI 790


>gi|170731315|ref|YP_001776748.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
 gi|167966108|gb|ACA13118.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
          Length = 763

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 174/491 (35%), Positives = 265/491 (53%), Gaps = 51/491 (10%)

Query: 34  VILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTL 91
           VILPFT+LRRL+  LE T+ AV E+       N+  +  +    AG +FYN SE++L+ L
Sbjct: 8   VILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVAEQDGALRMAAGQAFYNVSEFTLAKL 67

Query: 92  GSTNT----RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            ++      R++  +Y+  FS + + I   F+F + I +L  + +L  + ++F   E++ 
Sbjct: 68  KASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFLNPEVNL 127

Query: 148 DTVP--------------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +P              +  M  ++E LIRRF  + +E A +  TPRDVV L   LL  
Sbjct: 128 APLPVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFL 187

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
           P     + S     +LYD +CGTGG LT A   +      H     +   GQE+  ET+A
Sbjct: 188 PVAERIESS---TYSLYDGSCGTGGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYA 244

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +C A +L++   ++     ++NI  G   STLS D F  + F + +SNPP+GK W+ D  
Sbjct: 245 ICKADLLLKGEGAE-----AQNIVGGADKSTLSADQFHSRAFDFMISNPPYGKSWKTDL- 298

Query: 311 AVEKEHKNGELGRFGPG-------------LPKISDGSMLFLMHLANKLELPPNGGGRAA 357
               E   G+ G   P              L + SDG ++F ++   K++     G R A
Sbjct: 299 ----ERMGGKKGFSDPRFIVSHGGDSEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIA 354

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ T IATY+W+L+N+K E 
Sbjct: 355 LVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAEA 414

Query: 418 RRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475
           RRGKVQLI+A+  +  + RN GKK   +      +ILD+Y+ + +    S+  D + FGY
Sbjct: 415 RRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLGQAQEAAQSKWFDTQDFGY 474

Query: 476 RRIKVLRPLRM 486
            +I + RPLR+
Sbjct: 475 WKITIERPLRL 485



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 10/94 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD+ L + E VP  E   I  +F REV PH PDA+I             +VGYEI+F
Sbjct: 674 EYEPDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWIAT--------NKTQVGYEISF 725

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +R+FY+  P R L +I A++  +E Q   LL ++
Sbjct: 726 SRYFYKPVPLRTLAEIRADILVLEQQTEGLLHKI 759


>gi|302037815|ref|YP_003798137.1| putative type I restriction-modification system, N-6
           adenine-specific DNA methylase [Candidatus Nitrospira
           defluvii]
 gi|300605879|emb|CBK42212.1| putative Type I restriction-modification system, N-6
           adenine-specific DNA methylase [Candidatus Nitrospira
           defluvii]
          Length = 658

 Score =  270 bits (691), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 209/696 (30%), Positives = 320/696 (45%), Gaps = 89/696 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGS 65
           +LA+ IWK+AE L G FK  ++  VILP  ++RRLEC L    E   + VR K       
Sbjct: 12  NLADEIWKSAERLRGKFKAYEYQNVILPIIVIRRLECVLIKWREDKTTEVRAKRPKLTEK 71

Query: 66  NI-DLESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            +  L   +++    F N +  +L  +     T        YI  FS N   I + F++ 
Sbjct: 72  ELAKLVKGLELTTAPFSNKTNLTLRKVYEEEPTLLDQTFRKYINGFSKNVDDIIDHFNYR 131

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +TI ++ K   L  I   +  + L P  +    M  +YE L+RRF  +  E A +  TPR
Sbjct: 132 NTIGQMVKNNRLAPILNQYKELPLGPAQLSPLEMGYVYEELLRRFSEQSGEEAGEHFTPR 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK----IP 237
           +++ L   LL  P       +P    ++YDP CGTGG L+ A  H+ D  +  +    + 
Sbjct: 192 EIIRLMVELLEIP-------TPERHISIYDPACGTGGMLSVAKEHLLDRAATEQQRANVE 244

Query: 238 PILVPHGQELEPETHAVCVAGMLIRR------------LESDPRRDLSKNIQQGSTLSKD 285
             +  HGQEL P  +A+C A +LI+             +  DPR       + G  L + 
Sbjct: 245 QFVTVHGQELSPTNYAICQADLLIKNDRQAKVHLGNSLIPHDPRSK-----EPGDQLPES 299

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F   RF + LSNPPFG  W   KD  E E +  +  R+  G+P+++DG++LFL  +  K
Sbjct: 300 TF---RFDFMLSNPPFGVTW-GGKDGYETEARKLQGTRYKAGMPRVNDGALLFLQTMLAK 355

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++ P  G  R AI+ + SPL NG  GSGESEIRRW+LEND ++ IV LP  LF+ T I T
Sbjct: 356 MKEPEKGASRLAIIFNGSPLSNGDCGSGESEIRRWILENDWLDCIVMLPDQLFYNTGIFT 415

Query: 406 YLWILSNRKTEERRGKVQLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           Y+W+L N K    + KV LI+A   +    ++ G KR  I D  R  I   Y       F
Sbjct: 416 YIWLLRNDKPASHKDKVMLIDARQQYEKEPKSFGNKRNRITDAHRLWIESRYHDGWKDGF 475

Query: 465 S----RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           +    ++     F Y ++ V+     S   D+  +             P  +SF    +K
Sbjct: 476 ADEHVKLFHREDFAYHKVSVV--FWQSDDQDQPAIV----------TEPYEKSFTAANIK 523

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTL-------KVKASKSFIVAFINAFGRKDPRADP 573
              Q+ Y    +E   +  IK    + +       K  A+K F     N      P    
Sbjct: 524 -KEQEFYD---SELIFRVRIKEGRKEQIATLSLGPKDNATKVFKALMTNG-----PEILT 574

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           V     EW     + + E +P+ E+I+ +  RE++          I + E   ++   GY
Sbjct: 575 V-----EWTHRHYVKDDEYIPHGENIEAFLKREIA--------RPIILWEDSPQL---GY 618

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           EI  N++FY+Y P    +++ AE   +E +   +L+
Sbjct: 619 EILPNKYFYKYMPPTPAKELLAEFWRLEKEAEKMLK 654


>gi|325104611|ref|YP_004274265.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
 gi|324973459|gb|ADY52443.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
          Length = 746

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 280/522 (53%), Gaps = 36/522 (6%)

Query: 11  LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L  FI+  A+D L   ++ + +  VILP T++RRL+  LEPT+  V + Y  +     +L
Sbjct: 11  LIRFIYSIADDHLINTYEPSKYKDVILPMTVIRRLDLVLEPTKDRVIDTYNKYKDKLDNL 70

Query: 70  ESFVKV----AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +S +K     +G +FYNTS ++L +L   S N + N  +Y+  FS N + I   F F + 
Sbjct: 71  DSLLKSDKQGSGVAFYNTSPFTLKSLLNDSANIKANFINYLDGFSPNVQDIISRFKFRNE 130

Query: 124 IARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I  L++A  L+ + + F    I+L  D +P   M  ++E L+RRF    +  A    TPR
Sbjct: 131 IDTLDEAEKLFAVIQKFCSNKIDLSIDALPPLSMGYVFEDLLRRFNEATNAEAGRHFTPR 190

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +++ L T ++  P     ++   ++   YDP  G+G  LT++ N + D     K    + 
Sbjct: 191 EIIELMTNIIFLPVKDKIQQGSFLV---YDPCAGSGAMLTESKNFMTDDTGKIKSKATIH 247

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPP 300
            +GQE  P  +A+  + ML++    DP +     I  GSTLS+  F    +F + L+NPP
Sbjct: 248 LYGQENTPTIYAISKSDMLLKN--EDPDK-----IVFGSTLSQYGFDNDLKFDFMLTNPP 300

Query: 301 FGKKWEKDKDAVEKEHKNGELGR---------FGPGLPKISDGSMLFLMHLANKLELPPN 351
           +G  W+ DKD + K      + R               +++DG ++F+MH+ +K++   +
Sbjct: 301 YGTSWKDDKDILTKAGGGKIVDRRFIIQKEYDADAATTRVNDGQLMFVMHMLSKMK-ETD 359

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R A V + S LF G AG GESEIR+ ++E D++EA++ALP D+F+ T I T++ I++
Sbjct: 360 LGSRIASVHNGSALFTGDAGQGESEIRKHIIEKDMLEAVIALPNDMFYNTGIPTFILIIT 419

Query: 412 NRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           NRK E R+GKVQLINA +        ++ G KR  +  +  +++ ++Y+  +    S++ 
Sbjct: 420 NRKPEHRKGKVQLINANNEAFFGKRAKSLGSKRNELKPEHIKKVTELYLEFKETPHSKIF 479

Query: 469 DYRTFGYRRIKVLRPLRMSFILD--KTGLARLEADIT-WRKL 507
           D   FG+ +I V RP R +  LD   T   R  +D T  RKL
Sbjct: 480 DNNEFGFAQIIVHRPSRFAIQLDAKHTAEIRFASDNTELRKL 521



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           ++ D+NL + EN+P  + IQ +F  EV P  PDA+ +         E  ++GYEINFN++
Sbjct: 662 YVSDSNLKDTENIPLKQDIQAFFETEVLPFAPDAWWNP--------EETKIGYEINFNKY 713

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           FYQY+  R+L +I  ++  +E     LL+E+ 
Sbjct: 714 FYQYKAPRQLSEIAKDIFEIEKSADKLLKEIV 745


>gi|331007180|ref|ZP_08330393.1| N-6 DNA methylase [gamma proteobacterium IMCC1989]
 gi|330419012|gb|EGG93465.1| N-6 DNA methylase [gamma proteobacterium IMCC1989]
          Length = 817

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 190/559 (33%), Positives = 283/559 (50%), Gaps = 83/559 (14%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV ++          +
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKQAVLDEVKFQKEDMDAT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E     +G  FYN S+++L +L S  T N      N E Y+  +SDN K I E F+
Sbjct: 69  ELDDEPLKAASGQVFYNVSKWTLKSLFSNATNNQQILLANFEEYLNGYSDNVKEIIERFE 128

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPD-----------RVMSNIYEHLIRRF 166
             S I  +    +L  + + F    I L P+   D             M  ++E LIR+F
Sbjct: 129 LFSKIRHMAGKDVLLDVLEKFVSPYINLTPNPAEDPDGNKLPALTNLGMGYVFEELIRKF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++ N 
Sbjct: 189 NEENNEEAGEHFTPREVIELMTHLVFDP----IKDDLPLTITVYDPACGSGGMLTESQNF 244

Query: 227 VADCGSHHK----IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + +     K    I  I + +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTL
Sbjct: 245 IEEKYPTQKEGKSIRDIYL-YGKEINDETYAICKSDMMIKG--NNP-----ENIKVGSTL 296

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGL------------ 328
           S D F   RF + LSNPP+GK W  ++  ++     GE+   RF   L            
Sbjct: 297 STDEFASDRFDFMLSNPPYGKSWASEQKNIKD---GGEVIDPRFKVELSDYWGNKETVDA 353

Query: 329 -PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + +K++ P     G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVSKMKSPSTSPMGTRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIR-NEGK 439
           +++AIV LP +LF+ T I TY+W+L+N K       +RRGKVQLI+A+ L+  +R N G 
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKKGDGKGPDRRGKVQLIDASLLYRKLRKNLGN 473

Query: 440 KRRIINDDQRRQILDIY-----VSRE------------NGKFSRMLDYRTFGYRRIKVLR 482
           K      +   +I   Y     V RE             G  S++ +   FGY ++ + R
Sbjct: 474 KNCEFAPEHIAEITQAYLDCAEVERELDASAPEGMGDPIGIASQVFNNEDFGYYKVNIER 533

Query: 483 PLRMSFILDKTGLARLEAD 501
           P R         +A L  D
Sbjct: 534 PDRRKAKFSPEAIAPLRFD 552



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 61/96 (63%), Gaps = 11/96 (11%)

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE++   P ++L + E+VP  + I +YF+ EV PHV +A+I+   +D       ++GYEI
Sbjct: 718 GEYVTYEPSSDLRDSESVPLAQEIHEYFLEEVKPHVEEAWIN---LDST-----KIGYEI 769

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P R L ++  ++  +E +   L+ ++
Sbjct: 770 SFNKYFYRHKPLRSLDEVANDIIDLEQKAEGLIAQI 805


>gi|145642019|ref|ZP_01797591.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|145273290|gb|EDK13164.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.4-21]
          Length = 658

 Score =  263 bits (671), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 202/640 (31%), Positives = 311/640 (48%), Gaps = 146/640 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  ++E LIR+F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP C
Sbjct: 42  MGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDP---LKSQIPAII-TIYDPAC 97

Query: 215 GTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           G+GG LT++ N +      S  +    +   G+E   ET+A+C + M+I+        D 
Sbjct: 98  GSGGMLTESQNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DN 150

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--- 329
            +NI+ GSTL+ D F G  F + LSNPP+GK W KD+ A  K+       RF   LP   
Sbjct: 151 PENIKVGSTLATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYW 209

Query: 330 ----------KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEI 377
                     + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES I
Sbjct: 210 GNVETLDATPRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNI 269

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-N 436
           RR ++ENDL+EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N
Sbjct: 270 RRHIIENDLLEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKN 329

Query: 437 EGKKRRIINDDQRRQILDIYV------------SRENGKFSRMLDYRTFGYRRIKVLR-- 482
            G K      +   +I   Y+            + E G  S++ D + FGY ++ + R  
Sbjct: 330 LGDKNCEFAPEHIAEITQNYLDFTAKAREIDSQNEEVGLASQIFDNQDFGYYKVTIERPD 389

Query: 483 ------------PLR--------MSFILDKTG--------LARLEADIT----------- 503
                       PLR        M ++  + G        LA+ E +IT           
Sbjct: 390 RRSAQFTAENIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALN 449

Query: 504 ------------WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE------- 544
                       W K + L Q+    +     QQ + +   +  V+  +K+ +       
Sbjct: 450 NKNKAKLLDVKTWEKAAALFQTASKLLKHFGEQQFHDFNQFKQAVECRLKAEKIPLSATE 509

Query: 545 -------------------AKTLKVKASKSFIVAFINAFG-RKDPRADPVTDVN------ 578
                              AKTLK+K ++      ++A   R   +AD + D        
Sbjct: 510 KKAVFNAVSWYNENAAKVIAKTLKLKPNE------LDALCQRYQCQADGLADFGYYATGK 563

Query: 579 -GEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
            GE+I     ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYE
Sbjct: 564 AGEYIQYETSSDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYE 615

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           I+FN++FY+++P R L ++  ++  +E Q   L+ E+  E
Sbjct: 616 ISFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEILGE 655


>gi|150005917|ref|YP_001300661.1| type I restriction-modification system M subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|149934341|gb|ABR41039.1| type I restriction-modification system M subunit [Bacteroides
           vulgatus ATCC 8482]
          Length = 771

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 309/587 (52%), Gaps = 76/587 (12%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGG 64
            L   IW  A+D+  D F    +  VILP  +LRRL+  LEPT+ AV ++Y     A   
Sbjct: 3   QLIALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKVAVEQEYKSQIEAGLA 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDF 118
            N+D E+    +G ++YN S+++L+ L + ++ NN         Y+  +S+N K + ++F
Sbjct: 63  DNLDEEALKDESGQTYYNLSKWTLNRLKNQSSDNNDINYTNFIEYLNGYSENVKDVLKNF 122

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH--------PDTVPDRVMSNI-----YEHLIRR 165
           +F + + +L     L  I +  +   L+        PD +P   +SN+     +E L+RR
Sbjct: 123 EFYAKVKKLADNDRLISIIERITDPRLNLTDRPATDPDGLPLPAVSNLQMGTLFEELLRR 182

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E +E A +  TPRDV+ L   ++ +P     K++   I +LYDP CG+GG LT+  +
Sbjct: 183 FNEENNEEAGEHFTPRDVIELLAKMVFEP----VKDNLPKIISLYDPACGSGGMLTEGRD 238

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ + G     P  +  +G E+ PET+A+C +  +I+ +  DP     + + +G+T++++
Sbjct: 239 YLLNMGV---TPNAIQMYGTEVNPETYAICKSDFIIKGV--DP-----EGMHRGNTITEN 288

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PKIS 332
            F  K+F Y L+NPP+GK W++DK  +  + K+    RF   L             P+ S
Sbjct: 289 HFHNKQFGYMLTNPPYGKSWKEDKKKIYHD-KDLLDARFNLKLTNFIGEEEIVDSTPRTS 347

Query: 333 DGSMLFLMHLANK---LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW-LLENDLIE 388
           DG +LF++   +K   LE  P G  R A + + S LF G AGSGES IRR+ L+EN+L++
Sbjct: 348 DGQLLFILEEVDKMKSLEAQPQGS-RVASIHNGSSLFTGDAGSGESNIRRYYLIENNLVD 406

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP ++F+ T I+TY+W+LSN K +    KVQLI+A+  +  +R N G +   +   
Sbjct: 407 AIVQLPNNIFYNTGISTYVWLLSNHKQDH---KVQLIDASKAFDKLRKNLGSRNCEVTPK 463

Query: 448 QRRQILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
               I+ IY++R   +        S++ D   F Y  +++ RPLR+           L  
Sbjct: 464 DADDIVRIYMNRTECEANDDVRISSKIFDGDDFRYYSVQIERPLRLRCRFSAVKCDELLF 523

Query: 501 DITWRKLSP-LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
           D +  +LS  L+Q++   +   +  ++       + +KE +  NE K
Sbjct: 524 DSSMMELSKWLYQTYGDKVYSGLEAEV-------TDIKEYLNENELK 563



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 16/133 (12%)

Query: 545 AKTLKVKASKSFIVAFINAFGRKD---PRADPVTDVNGEWI---PDTNLTEYENVPYLES 598
           AK LK K     I AF+  +G  +   P        +G ++    D++L + E +P  E 
Sbjct: 645 AKVLKAKNKD--IPAFLATYGIDESLLPDYGYYPQTDGTYVTYEADSDLRDIEKIPVKED 702

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I +Y  REV+P+V +A+I        +  + ++G EI+FN++FY+    R L++ + ++ 
Sbjct: 703 IWEYVQREVNPYVSEAWI--------NLPVTKIGCEISFNKYFYKPAQLRSLEENEHDIL 754

Query: 659 GVEAQIATLLEEM 671
            ++ Q    +E +
Sbjct: 755 ELDRQSQGFIEAL 767


>gi|239995892|ref|ZP_04716416.1| hypothetical protein AmacA2_15636 [Alteromonas macleodii ATCC
           27126]
          Length = 333

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/338 (42%), Positives = 206/338 (60%), Gaps = 30/338 (8%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ +V ++       N+  E+
Sbjct: 11  AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKDSVVKEAERVKAMNLPEEA 70

Query: 72  FVKVA-----------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             K+            G SF+NTS   L  +G ++ + NL +Y+ SFS +A+ IFE F F
Sbjct: 71  QEKMLIRATQTTNNPDGLSFFNTSPMDLGKMGQSDIKANLGTYVQSFSSDAREIFEHFKF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  L+ A LLYK+ K F+  +L P  + +  M  ++E LIRRF    +E A +  TP
Sbjct: 131 DEFVGLLDDANLLYKVVKKFATTDLSPKNISNHDMGLVFEELIRRFAESSNETAGEHFTP 190

Query: 181 RDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238
           RD+V L T+L+ ++ DDAL KE  G+IRT+YDPT GTGGFL+  M +V      H++ P 
Sbjct: 191 RDIVRLTTSLVFMEDDDALTKE--GIIRTIYDPTAGTGGFLSSGMEYV------HELNPN 242

Query: 239 -ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            ++   GQEL PE++A+C A MLI+       +D+S+ I+ G+TLS D     +F Y LS
Sbjct: 243 AVMRAFGQELNPESYAICKADMLIK------GQDVSR-IKLGNTLSNDQLPADQFDYMLS 295

Query: 298 NPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDG 334
           NPPFG  W+K +  ++ EH   G  GRFG GLP++SDG
Sbjct: 296 NPPFGVDWKKIESDIKDEHNLEGFDGRFGAGLPRVSDG 333


>gi|201067948|ref|ZP_03217819.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004472|gb|EDZ04965.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 469

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 275/525 (52%), Gaps = 71/525 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  ++E LIR+F  E +E A +  TPR+++ L T L+  P     K+   +I   YD  C
Sbjct: 6   MGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWLI---YDNAC 62

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GG LT++   + D     +    +  +GQE+ PET+A+C A MLI+    +P R    
Sbjct: 63  GSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKG--ENPER---- 116

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD--AVEKEHKNGELG--RFGPGLPK 330
            I+ GSTLS D     +F + LSNPP+GK WE D+    VEK+  N      RF  G+  
Sbjct: 117 -IKFGSTLSNDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITS 174

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            SDG M+FL+++ +K++     G R A V + S LFN  + SG   IR++++END +EAI
Sbjct: 175 KSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFN--SDSGMVAIRKYIIENDYLEAI 232

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDD 447
           VALPT++F+ T I T++WI++N+K E ++GKVQLINAT  + ++ ++   G K+  +  +
Sbjct: 233 VALPTNMFYNTGIPTFIWIITNKKPEHKKGKVQLINATNKEYFSKMKKSLGSKQNEMTKE 292

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRK 506
              +I  +++   + K  ++LD   FGY +I + +P  + F+ D    A+L + D    K
Sbjct: 293 HIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEFLKDDEKFAKLKDKDKILEK 352

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
           L  L ++                        +  K+ E               FI   G 
Sbjct: 353 LEQLEKN-----------------------PQDFKNRE--------------EFIKFLGV 375

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
           K  +++    ++ +   +T     E +P    IQ+Y+  EV P+V +++I          
Sbjct: 376 KLKKSEENLIIDSDKTNNT-----EKIPLKTDIQNYYDTEVKPYVANSWI--------AW 422

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +   VGYEI FN++FY Y P RKL +ID+ELK +E +   LL ++
Sbjct: 423 DSASVGYEILFNKYFYTYTPPRKLSEIDSELKALEKETQELLNKI 467


>gi|126434813|ref|YP_001070504.1| N-6 DNA methylase [Mycobacterium sp. JLS]
 gi|126234613|gb|ABN98013.1| N-6 DNA methylase [Mycobacterium sp. JLS]
          Length = 371

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 218/384 (56%), Gaps = 30/384 (7%)

Query: 305 WEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLS 361
           W   + AV  E+ + G  GRFGPGLP++SDGS+LFLMHL +K++    G  G R AIVL+
Sbjct: 3   WNTQQKAVTDEYEQRGFAGRFGPGLPRVSDGSLLFLMHLISKMQPVKGGEGGSRLAIVLN 62

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGES IR+W++ENDL++AI+ALPTD+F+ T IATY+WIL N K  +R+GK
Sbjct: 63  GSPLFTGGAGSGESNIRQWIIENDLLDAIIALPTDMFYNTGIATYIWILDNNKPAKRKGK 122

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVS--RENG-----KFSRMLDYRTF 473
           VQLINA D++  +R   G KR+ +      +I  +Y S   E+G       S++     F
Sbjct: 123 VQLINAVDMYGKMRKSLGSKRKELRPKDIERICHLYDSFRNEHGTDERPSHSKVFKSEEF 182

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA- 532
           GY  + V RPL++ F   +  +  + A  +  KL P  Q+   + L  ++      GW  
Sbjct: 183 GYSTVTVERPLQLRFTPTEEKVEEVLAQKSIDKLKPGEQAAVRNALTGLI------GWEW 236

Query: 533 ---ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
              + FV E +K    K    K     +    +  G  D +A  VTD  G+  PD  L +
Sbjct: 237 MHRDEFVTE-LKDALRKAGLTKPGAPLVKTIWSTIGEHDEKALIVTDSKGDTEPDPALRD 295

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            ENVP  + I +YF REV PHVPDA+ID       DK   +VGYEI F R FY+Y   R 
Sbjct: 296 TENVPLTDDIDEYFAREVVPHVPDAWID------HDKT--KVGYEIPFTRHFYRYVAPRP 347

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L++I  +L+ +  +I  +L E+  
Sbjct: 348 LEEIQKDLRVLVGEIQAMLAEVGA 371


>gi|257790529|ref|YP_003181135.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257474426|gb|ACV54746.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 799

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 270/545 (49%), Gaps = 48/545 (8%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +     W  A+ L G +K  ++G VILP T+++R    L PT   V E    +    +  
Sbjct: 20  TFGTLPWNVADTLRGPYKPHEYGLVILPMTVIKRFHDCLLPTHGKVVEAAEEYKNFAVKD 79

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               + +GY FYNTS+++  TL +   N  +N + Y+  FS+N + I    DF   I RL
Sbjct: 80  GFLREASGYPFYNTSKFTFETLKADPANIEDNFKDYLNGFSENVQDILARMDFFRQIERL 139

Query: 128 EK--AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
               A LLY++  +F     ++ P+ +    M  I+E+LI+RF     E A    T RD+
Sbjct: 140 SDPDAPLLYQVVSDFCAERADMSPEKIKPVDMGYIFENLIQRFSESYDEDAGAHFTSRDI 199

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V+L T LL+  D  +F +   + +T+YD T GT   L+     +       ++       
Sbjct: 200 VYLMTDLLIAADPHVF-DGDRISKTVYDQTMGTSQMLSCTEERLRQLDDDARV----TCF 254

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +  A  LIR  E D       N++ G TLS D F   +F YC+SNPPFG 
Sbjct: 255 GQEFNPFTFGIAKASALIRG-EDD------ANMRFGDTLSSDKFADYKFDYCISNPPFGG 307

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W+ ++ AV KE K  G   RF  GLP   DG MLF+++   KL+      G   IV  +
Sbjct: 308 DWKLEETAVRKEAKLTG--SRFHVGLPARGDGQMLFMLNGIAKLK----DEGVMVIVQDA 361

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPL+ G+  SGE +IR ++LEND ++AI+ L  D F+ T + T+LW+++  K E+R GKV
Sbjct: 362 SPLYKGKPESGEDKIRSYILENDWLDAIIRLSGDAFYNTGLVTFLWVINKGKPEKRAGKV 421

Query: 423 QLINATDLWTSIRNE--GKKRRIINDDQRRQILDIYVSRENGKFSR-------------M 467
           QLI+A+      RN   GKKR  I    R  +L+ +   E   +S              +
Sbjct: 422 QLIDASGCCVP-RNRPIGKKRNDITKFCRDLVLEAFSDFETKDYSSSSESGNAIHVRSLV 480

Query: 468 LDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            D   FGY R+ V  PL     S ++DK G    +A+    +  PL      DI + M +
Sbjct: 481 CDAADFGYNRVGVCEPLFNPDGSIVVDKKGSPVADAEREDTEDIPLS----YDIDEYMEK 536

Query: 525 QIYPY 529
           ++ P+
Sbjct: 537 KVLPF 541



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           +P    V D  G  + D    + E++P    I +Y  ++V P    A++++        +
Sbjct: 499 NPDGSIVVDKKGSPVADAEREDTEDIPLSYDIDEYMEKKVLPFNEHAWLNR--------K 550

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
             + GY I F RFFY++     + D   EL
Sbjct: 551 KQKTGYTIPFTRFFYEFMDLETVNDAAQEL 580


>gi|167039867|ref|YP_001662852.1| N-6 DNA methylase [Thermoanaerobacter sp. X514]
 gi|300915377|ref|ZP_07132691.1| N-6 DNA methylase [Thermoanaerobacter sp. X561]
 gi|166854107|gb|ABY92516.1| N-6 DNA methylase [Thermoanaerobacter sp. X514]
 gi|300888653|gb|EFK83801.1| N-6 DNA methylase [Thermoanaerobacter sp. X561]
          Length = 552

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 238/443 (53%), Gaps = 39/443 (8%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES----YIASFSDNAKAIFEDFDFSSTIAR 126
           +    AG SF N+S + L  L S   +  L++    Y+  FS N + I + F F + I  
Sbjct: 16  ALCNAAGQSFCNSSPFCLRDLTSRAKKQTLKADFIAYLDGFSPNVQEILDKFKFRNQIDT 75

Query: 127 LEKAGLLYKICKNFSG--IELHPDTV--------------PDRVMSNIYEHLIRRFGSEV 170
           +  A +L  + + F    I L P+ V               +  M  I+E LIRRF  E 
Sbjct: 76  MIDADILGAVIEKFVSPTINLSPNPVYKDDEKKEIRLPGLDNHTMGVIFEELIRRFNEEN 135

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPRDVV L   L+  P     K++     + YD  CGTGG LT A + + + 
Sbjct: 136 NEEAGEHFTPRDVVELMADLIFVPVADKIKDA---TYSCYDGACGTGGMLTVAQDRLIEL 192

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +   GQE+ PET+A+  + +L++      + D + +I  GSTLS D F   
Sbjct: 193 AEKAGRKVSIHLFGQEINPETYAIAKSDLLLQ-----GQGDQADHIGFGSTLSNDQFPTY 247

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISDGSMLFLMH 341
           +F + LSNPP+GK W+ D D +  + K+    RF            +P+ SDG +LFL++
Sbjct: 248 QFDFMLSNPPYGKSWKVDADKLGGK-KDIMDSRFVTNFADDPNFSMIPRTSDGQLLFLLN 306

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              K++     G R   V + S LF G AGSGES  RR+L+ENDL+EAI+ALP ++F+ T
Sbjct: 307 NVAKMKKTTELGSRIVEVHNGSSLFTGDAGSGESNARRYLIENDLVEAIIALPENMFYNT 366

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE 460
            I TY+W+LSN K E R+ K+QLI+AT L + +R N GKK      + RRQILD+Y++ E
Sbjct: 367 GIGTYIWVLSNNKAEHRKSKIQLIDATLLKSPLRKNLGKKNCEFTSEIRRQILDLYMAFE 426

Query: 461 NGKFSRMLDYRTFGYRRIKVLRP 483
             ++S++ D   FGY ++ VLRP
Sbjct: 427 ENEYSKIFDNNEFGYWKVTVLRP 449



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 18/108 (16%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDE 623
           +KD +  PV  VN E      LT+ E +P  Y   I+ +F +EV P  PDA+ID     E
Sbjct: 458 QKDKKGKPV--VNKE------LTDTEQIPFTYEGGIEAFFEKEVKPFAPDAWID-----E 504

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           K     ++GYEI+F ++FY+    R L++I A+++ +E +   LL E+
Sbjct: 505 KQT---KIGYEISFTKYFYKPIQLRTLEEITADIRALEVETDGLLAEI 549


>gi|56421441|ref|YP_148759.1| hypothetical protein GK2906 [Geobacillus kaustophilus HTA426]
 gi|56381283|dbj|BAD77191.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 372

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 218/379 (57%), Gaps = 31/379 (8%)

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSSPLFNG 368
           E+    G  GRFG GLP+ISDG +LFL HL +K+    E  P G  R AI+++ SPLF G
Sbjct: 3   EEHESKGFNGRFGAGLPRISDGQLLFLQHLVSKMKPVSEENPKGS-RIAIIMNGSPLFTG 61

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AGSGESEIRR+L+ENDL+E IVALP  LF+ T I+TY+WIL+N K   R+GK+QL+NA 
Sbjct: 62  DAGSGESEIRRYLIENDLVEGIVALPDQLFYNTGISTYIWILTNNKNPLRKGKIQLVNAV 121

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           + +  ++   G KR  ++++   +I+ IY   + G+  ++ D   FGYR+I + RPLR++
Sbjct: 122 NFYQKMKKSLGDKRNELSEEHINEIVRIYGDFKEGEHCKIFDNEDFGYRKITIERPLRLN 181

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDIL-----KPMMQQIYP----------YGWA 532
           F +D+  +  L     ++ L+   +     +      K + +QI            Y   
Sbjct: 182 FKIDEERIKELYNQTAFKNLATSKKRGEAGLKEIEEGKRLQEQIIEALLSIKDGVVYKNR 241

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
           E F K+  +  + K +K+ A  + + A ++A   KD  AD   D  G   PD +L + EN
Sbjct: 242 EEFTKKIKELFKEKDIKINA--TLLKAILSALSEKDETADICRDSKGNPEPDPDLRDTEN 299

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E I +YF REV P+VPDA+ID+           ++GYEI F R+FY+Y P R  ++
Sbjct: 300 VPLKEDIYEYFEREVKPYVPDAWIDETKT--------KIGYEILFTRYFYKYTPLRSSEE 351

Query: 653 IDAELKGVEAQIATLLEEM 671
           +  E+K +E  I   L+++
Sbjct: 352 VIKEIKELEGSILEKLKKV 370


>gi|264677646|ref|YP_003277552.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208158|gb|ACY32256.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 448

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 210/349 (60%), Gaps = 27/349 (7%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  ++E LIR+F  E +E A +  TPR+V+ L T L+  P     K+      T+YDP C
Sbjct: 37  MGYVFEELIRKFNEENNEEAGEHFTPREVIKLMTNLVFIP----VKDQLPYPLTIYDPAC 92

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GG LT++ + + D     K    +  +G+E+ PET+A+C + M+I+   +DP     +
Sbjct: 93  GSGGMLTESQDFITDPEGEIKAKVGVFLYGKEVNPETYAICKSDMMIKG--NDP-----E 145

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-----EHK--------NGEL 321
           NI+ GSTL+ D F+G RF + L+NPP+GK W+ D+ ++ +     +H+          E 
Sbjct: 146 NIKFGSTLATDDFSGTRFDFMLTNPPYGKSWKSDQKSIVEGKDVIDHRFQVNLSDYTEED 205

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRR 379
             F P +P+ SDG +LF+M +  K++   +   G R A V + S LF G AGSGES IRR
Sbjct: 206 FDFYPAIPRSSDGQLLFMMEMVGKMKRRNDSPMGSRIASVHNGSALFTGDAGSGESNIRR 265

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEG 438
            ++END +EAI+ LP +LF+ T I TY+W+LSN K ++ +GK+QLI+A++L+  +R N G
Sbjct: 266 HIIENDYLEAIIQLPNNLFYNTGITTYVWVLSNNKADQCKGKMQLIDASNLYQKLRKNLG 325

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           +K     D+   QI  +Y+   N   S++ + R FGY ++ + RPLR++
Sbjct: 326 EKNCEFTDEHIHQITQLYLEMPNDGISKVFNNRDFGYYKVTIERPLRLA 374


>gi|302380078|ref|ZP_07268553.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3]
 gi|302312098|gb|EFK94104.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3]
          Length = 480

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 249/494 (50%), Gaps = 62/494 (12%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT A NH+ +      I       GQE+  +++AV +A MLI+  ++       +N + 
Sbjct: 1   MLTTAYNHLHNLNPKADIRLF----GQEIMGQSYAVGLAEMLIKGQDA-------RNFKH 49

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWE-KD-----KDAVEKEHKNGELGRFGPGLPKIS 332
             T  +D F   +  + L NPPFG  W  KD     + AV + HK G   R+  GLP   
Sbjct: 50  ADTFKEDCFEDTKMRFVLENPPFGMSWGGKDAKAGQEQAVLENHKRGNDSRWPAGLPSSG 109

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D  +LF+    +K++   +  GRAAI+ + SPLFNG   SGES+IRRWLLENDLIEAI+A
Sbjct: 110 DAQLLFMQSAIDKMD---DEHGRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIA 166

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQ 451
           +PTDLF+ T IATY+WILS  K +ER GK+QLI+AT+++ ++R   G KR+    + R+ 
Sbjct: 167 MPTDLFYNTGIATYVWILSKNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKT 226

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           I  +Y        S++ D   F YR   V++PL+ S+ ++   +  LE   T  KL+  +
Sbjct: 227 ITKLYSDFVENDKSKIYDNEEFIYREYTVMQPLQRSYAINDERIENLE---TSGKLNSFY 283

Query: 512 QSFWLD------------------ILKPMMQQIYPYGWAESFVKESIKSNEAKTL----- 548
                D                   LK   +    Y      +KE+I   +  ++     
Sbjct: 284 DKTKHDEILEKQETSEKLTKTETNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEP 343

Query: 549 -------KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                  ++  +K+     I+     D  AD  TD  G  I D +  + E V   E+I+D
Sbjct: 344 VVNDLLSELSLNKTVFNNIIDGLSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIED 403

Query: 602 YFVREVSPHVPDAYIDKIFIDE----KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           Y  REV PH+PDA   K F +E    K+ +I + G EI F R+FY+YQ  R  +++  E 
Sbjct: 404 YMKREVLPHIPDA---KSFFEEDVTLKNPKI-KTGAEIPFTRYFYKYQAPRPSEELAQEF 459

Query: 658 KGVEAQIATLLEEM 671
             +E  +   ++E+
Sbjct: 460 LELEDIVNQKVKEL 473


>gi|330994842|ref|ZP_08318764.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758103|gb|EGG74625.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 546

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 214/432 (49%), Gaps = 54/432 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A  IW+ AE L G     ++G VIL FT+LRRLE              LA G        
Sbjct: 8   APAIWRIAELLRGVVPPGEYGPVILAFTVLRRLE--------------LARG-------- 45

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG 131
                            +     +    LE+ +       + +    +      RL +AG
Sbjct: 46  ----------RPVSALAAVASVADPLARLETLLGRLPAPVRGMMAQMEMGPLATRLARAG 95

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L ++  +F+ ++L P     + M+ ++E L+R F +  + GA    TP ++  L T L+
Sbjct: 96  VLGRVAAHFAALDLSPALYGTQAMARLFEELVRHFDAGQATGAH--YTPPEIGDLMTDLV 153

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
             PD A      G    LYDP  GTG  L  A + +A  G    +       GQE+    
Sbjct: 154 FAPDAA------GTRHALYDPAAGTGVLLGRAADRLAGRGVAVDL------FGQEISARA 201

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
            A+C A ML+R    +P      +I  G+TL+ D    +RF   L+NPPFG  W   +  
Sbjct: 202 CAICQADMLLR--GRNP-----AHILPGNTLAVDHHASRRFARMLANPPFGVDWRAIRPL 254

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           V+ EH  G  GRF  GLP+++DGSMLF++HL  ++  P  GG R  +V   + L  G A 
Sbjct: 255 VQAEHATGSAGRFAAGLPRVADGSMLFMLHLLARMRAPARGGARVGMVTHGAALAGGGAD 314

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           SGES IRR L+++DLI+ ++ALP D+F  T IATY+WIL NRK   R+G V+L++AT LW
Sbjct: 315 SGESAIRRHLVDHDLIDTVIALPGDMFVNTGIATYVWILDNRKPAGRQGMVRLVDATGLW 374

Query: 432 TSI-RNEGKKRR 442
               R+ G+KRR
Sbjct: 375 RRCPRSSGEKRR 386


>gi|254410687|ref|ZP_05024466.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196182893|gb|EDX77878.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 440

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 235/439 (53%), Gaps = 55/439 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGS 65
           L +FIW  A+D   D F    +  VILP  +LRRL+C LE T+  V E+        G +
Sbjct: 9   LVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEETKDKVTEEVRFQREDVGLT 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFD 119
            +D E   + + Y FYN S+++L  L ST   N      N ++Y+  FS+N K I   FD
Sbjct: 69  ELDPEGLREASDYVFYNVSDWTLKKLVSTAANNRQILEENFKAYLNGFSENVKEIINRFD 128

Query: 120 FSSTIARLEKAGLLYKICKNFSGIEL----HPDTVPDRV---------MSNIYEHLIRRF 166
             S I ++ ++ +L  + + F+  E+    H  T PD           M  ++E LIRRF
Sbjct: 129 LRSQIRKMSQSDVLLDVLEKFTSPEINLSPHEITTPDGRKLPGLSNLGMGYVFEELIRRF 188

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             E +E A +  TPR+V+HL T L+  P  D L    P ++   YD  CG+GG LT++ N
Sbjct: 189 NEENNEEAGEHFTPREVIHLMTHLVFLPIKDRL---PPTLLG--YDGACGSGGMLTESQN 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + D          +  +G+E+  ET+A+C + M+I+   ++P     +NI+ GSTL+ D
Sbjct: 244 FLQDPNGEIAADTQVFLYGKEVNGETYAICKSDMMIKG--NNP-----ENIKFGSTLATD 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKD-------------AVEKEHKNGELGRFGPGLPKIS 332
            F+  +F + L NPP+GK W+  +               V+ +   GE    G  +P+ S
Sbjct: 297 EFSDLKFDFMLENPPYGKSWKTSQKYIMDGKNVLDSRFEVKLKSFQGEWETIG-AVPRSS 355

Query: 333 DGSMLFLMHLANK---LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           DG +LFLM + +K   LE  P G  R A V + S LF G AGSGES IRR+++END +EA
Sbjct: 356 DGQLLFLMDMVSKMKPLEQSPLGS-RIASVHNGSALFTGDAGSGESNIRRYIIENDWLEA 414

Query: 390 IVALPTDLFFRTNIATYLW 408
           I+ LP ++F+ T I+TY++
Sbjct: 415 IIQLPQNMFYNTGISTYIY 433


>gi|218677780|ref|ZP_03525677.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium
           etli CIAT 894]
          Length = 251

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 125/252 (49%), Positives = 163/252 (64%), Gaps = 17/252 (6%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E+  +C + ML+     DP     +NI  G+TL++D    +RFHY LSNPP+G  W
Sbjct: 1   ELNGESFGICKSDMLV--TGHDP-----ENIAFGNTLTQDAHKDRRFHYMLSNPPYGVDW 53

Query: 306 EKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K ++ +  E    G+ GRFG GLP+ISDG +LFL H+ +K+     G  R  IV++ SP
Sbjct: 54  KKYQEPIRDEAATQGKDGRFGAGLPRISDGQLLFLQHMISKMRTDEIGS-RIGIVMNGSP 112

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRRW+LE+D IEAIVALPTDLF+ T I TY+W+L+NRK  +RRGKVQL
Sbjct: 113 LFTGGAGSGESEIRRWMLESDWIEAIVALPTDLFYNTGIQTYVWLLTNRKERKRRGKVQL 172

Query: 425 INATD--LWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG-----KFSRMLDYRTFGYR 476
           I+A+    W  +R N G KRR I DD R  I  I+    NG       S++ D   FGYR
Sbjct: 173 IDASGERFWAPMRKNLGSKRREIRDDGRETITHIFHETANGGGPWSAVSKIFDASDFGYR 232

Query: 477 RIKVLRPLRMSF 488
            I+V RPLR++F
Sbjct: 233 EIRVERPLRLNF 244


>gi|227500129|ref|ZP_03930200.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217771|gb|EEI83071.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 487

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/441 (32%), Positives = 220/441 (49%), Gaps = 53/441 (12%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE+   +HA+C A MLI+       R++     + +TL+ D F  ++    + NPPFG 
Sbjct: 25  GQEILESSHAICAADMLIK---GQDIRNIRGGDPEANTLTTDCFENQKIRLVIMNPPFGT 81

Query: 304 KWEKDKDA-------VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            W   KDA       V +EHK G  GRFG GLP  +D  +LF+ H  NKL   P+G  RA
Sbjct: 82  PW-GGKDAPSGQEKKVREEHKKGFNGRFGAGLPATTDAQLLFMQHAVNKL--TPDG--RA 136

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + S LF+G   SGES+ RRWL+END IEAI+ LP  LF+ T+IA Y +I+S  K +
Sbjct: 137 AIISNGSSLFSGGTTSGESQTRRWLIENDYIEAIIGLPGQLFYNTDIAIYAFIISKNKRK 196

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +R+GK+QLINA D++  +R   GKKRR I+ + R+ I+ +Y + E  ++S++     F Y
Sbjct: 197 DRQGKIQLINAVDMFKPLRKSLGKKRREIDLESRKNIVKLYSAFEENEYSKIFPNEEFLY 256

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM-------QQIYP 528
           +   V  PL+ S  L    + +LE  + +   S +      + L+ M        ++   
Sbjct: 257 KEYAVYEPLQRSGSLSLENIKKLEDSVLFTSNSHIFNQADFEELQEMNPRNPEDEKKYQK 316

Query: 529 YGWAESFVKESIKSNEAKTLKVKA-------------------------SKSFIVAFINA 563
           Y   + +  + I      TLK  A                         S S +   +  
Sbjct: 317 YLKGKKYTDDVI-----DTLKENASDKHYDDLSEFQDLLKNMLKDVDGHSASRLNNILFE 371

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE 623
               D  A    +  G    DT   + E +   +++++YF +EV PHVPDA     + + 
Sbjct: 372 LTEIDKNAVIQKNRKGTIELDTTTRDTEIIKLSQNVEEYFNKEVFPHVPDAIYFYDYDEN 431

Query: 624 KDKEIGRVGYEINFNRFFYQY 644
           K     ++G EI F ++FY+Y
Sbjct: 432 KKNSKEKLGAEIPFTKYFYEY 452


>gi|186685409|ref|YP_001868605.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467861|gb|ACC83662.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 684

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 181/716 (25%), Positives = 326/716 (45%), Gaps = 103/716 (14%)

Query: 15  IWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDL 69
           IW  A+ L G   K +++   ++PF  L  +E  L    +  ++ + E  LA      DL
Sbjct: 13  IWATADLLRGCGIKESEWPSYMMPFFALVMIESRLVRMFDELKAEIGEAALAEIAPE-DL 71

Query: 70  ESFV--KVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKAIF-------ED 117
              +  K  GY+ Y   +         N ++   + E+Y+  F    K +        E 
Sbjct: 72  TGLIEDKGQGYNVYIFEKNQTLKDICKNDKSFDVDFEAYLRGFDGETKDLLGVEATEGEK 131

Query: 118 F-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F D    I +L+   +L    K +S I+L P    +  ++ + EH+ RR+    ++ A +
Sbjct: 132 FLDIKGVITKLKAKKVLLGYTKEWSSIDLKP--FDNSAITTLEEHIKRRWADISADTAGE 189

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP DV+ L   ++        +ES  +++ +YD TCG G  L    + +     H + 
Sbjct: 190 QYTPDDVIGLIAEIIASK----IEESDKLLK-IYDCTCGGGNLLFGVEDRI-----HQRF 239

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +    GQ+     +A+        ++ES  R D    I+ G+TL+ D F    F   +
Sbjct: 240 KRLTQTFGQDWNDALYALA-------KIESRFRVD--SKIEHGNTLTDDKFYNDEFDVVI 290

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+G KW    +  +K+ +N +  RF   LP ISDG +LF+ HL +KL    N  G  
Sbjct: 291 ANPPYGVKW----NGYQKDIENDKTQRF-KYLPSISDGQLLFMQHLISKL----NANGMG 341

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V + S LF+G AGS ES IR+W+L++D +EA++ LPTD FF T I TYLW+L+  K  
Sbjct: 342 VVVHNGSTLFSGDAGSAESNIRKWMLDSDFVEAVIQLPTDEFFNTGIYTYLWVLNKHKLP 401

Query: 417 ERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           + R KV LINA++ +  + +++G KR+ +++  R +I++      +  ++R+ D   F +
Sbjct: 402 QCRDKVMLINASEKFKPLKKSKGSKRKEVDEVSRLEIVETLTRFVDNDYARVFDKEFFYF 461

Query: 476 RRIKV---------------LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            +  +               L+  ++S  L    L   E  +T   ++      +  +++
Sbjct: 462 NKQAIMLTNVDEQGKSFASRLKEGKISLKLSPLKLDNGERTLTEFTITNCDSQRFGSLVE 521

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTL-KVKASKSFIVA---------------FINAF 564
              Q I P+  +  + ++ +     K L +  A +  ++                 + A 
Sbjct: 522 AFEQDIKPFVSSLDYKEQPLTVTTEKALYRFDADRETLIKEVLGKQEEALGCGKIVVKAA 581

Query: 565 GRKDPRADP-VTDVNGEWIPDTNLTEYENVPY-------LESIQDYFVREVSPHVPDAYI 616
            +K  +  P   ++  E  PD    +YE +P+        E+I+ +  + ++   P  Y+
Sbjct: 582 FKKGTKTQPEKIEITVELTPDYQ-KDYEIIPFHRDEVANQEAIEAFMAKYITK--PFEYL 638

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           + +           VG EINFN+ FY+ +  R +Q I  E+  +E ++  L E + 
Sbjct: 639 ENV-----------VGVEINFNKVFYKPEKLRSVQKILGEITAIEKELKGLEEGLG 683


>gi|126434842|ref|YP_001070533.1| N-6 DNA methylase [Mycobacterium sp. JLS]
 gi|126234642|gb|ABN98042.1| N-6 DNA methylase [Mycobacterium sp. JLS]
          Length = 316

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 169/300 (56%), Gaps = 17/300 (5%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           A + AN IWK AE L G ++   +G VILPFT+LRRL+C LEPT+  V  +Y     + +
Sbjct: 2   AQTNANLIWKIAELLRGPYQPNQYGDVILPFTILRRLDCILEPTKDEVLAEYAKISATKV 61

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           D    +K      FYNTS ++ + L        +NL  YI  FS N + +F+ F     I
Sbjct: 62  DPAVMLKAKFKLPFYNTSRWTFAALVGDPEGVADNLIDYIERFSPNVRDVFDGFKMVDLI 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           A L K+  LY I K F+ ++LHP+ V +  M  I+E LIR+F    +  A D  TPR+V+
Sbjct: 122 ADLAKSDRLYLIVKEFAAVDLHPNVVTNHDMGYIFEELIRKFAESNNAQAGDHFTPREVI 181

Query: 185 HLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
            L   +L    DDAL K  PG +RT+YDP  GTGG L+ A +H+ +   + K  P+L  +
Sbjct: 182 ALMVDILFHAQDDALTK--PGTVRTIYDPAAGTGGMLSTAHDHLIE--MNPKARPVL--Y 235

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQ++ P ++A+C + M+++  + D       NI  G TL+ D F  K F + LSNPPF K
Sbjct: 236 GQDINPRSYAMCKSDMIVKGQDVD-------NIYLGDTLTDDGFRTKTFDFLLSNPPFRK 288


>gi|325678458|ref|ZP_08158075.1| N-6 DNA Methylase [Ruminococcus albus 8]
 gi|324109846|gb|EGC04045.1| N-6 DNA Methylase [Ruminococcus albus 8]
          Length = 290

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 176/306 (57%), Gaps = 29/306 (9%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS N + I +  DF   I +++K   L  + K FS ++L P T+ +  M  I+E LIR+F
Sbjct: 1   FSANVQDIIKSLDFDKQIDKMDKNNRLLSVVKAFSELDLDPKTIDNVKMGYIFEELIRKF 60

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            SE +E A D  T RD++ L   +LL +  D +F +   +  T+ D   GTGG L+ + N
Sbjct: 61  -SENAE-AGDHYTGRDIIKLMVNILLAEGCDDIFDDHKEI--TILDQAAGTGGMLSTSYN 116

Query: 226 HVADCGSHHKIPPI--LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            +      H+  P   +   GQE+ PE++A+CVA MLI+   ++       NI+   T+ 
Sbjct: 117 FI------HRYNPTANVRLFGQEINPESYAMCVAEMLIKGQNAE-------NIRMQDTMK 163

Query: 284 KDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            D F  ++  + + NPPFG  W      E  + AV++E++ G  GRFG GLP   D  +L
Sbjct: 164 ADCFPDRQMRFVIENPPFGTPWGGKDAAEGVEQAVKEENQKGFDGRFGAGLPGSGDMQLL 223

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    NK++   N  GRAAI+ + SPLF+G   SGES+IRRWLLENDLIEAI+ALP DL
Sbjct: 224 FIQSAVNKMD---NALGRAAIIENGSPLFSGGTSSGESQIRRWLLENDLIEAIIALPVDL 280

Query: 398 FFRTNI 403
           F+ T I
Sbjct: 281 FYNTGI 286


>gi|307947316|ref|ZP_07662650.1| N-6 DNA methylase [Roseibium sp. TrichSKD4]
 gi|307769458|gb|EFO28685.1| N-6 DNA methylase [Roseibium sp. TrichSKD4]
          Length = 403

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 183/353 (51%), Gaps = 30/353 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           + + + +   L   IW  A  L G ++   + +V+LP T+LRR++  L PT+  V ++Y 
Sbjct: 23  VCDLSQNHDQLVGLIWNIANKLRGPYRPPQYRRVMLPLTVLRRMDLVLAPTKDKVLKQYA 82

Query: 61  AFGGSNIDLESFVKVAGYS--------FYNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110
                    ++  K+ G +         YN S+Y    L     N   NL +YI  FS  
Sbjct: 83  KLQAQGHSEDAVHKILGKTASGDREQPLYNVSQYDFEKLLGDPNNIARNLVTYIEGFSPK 142

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGS 168
           AK IF  F F + I +L+ A  L+ I K F+   ++LHPD V +  M  ++E L+R+F  
Sbjct: 143 AKDIFSKFGFDAEIEKLDNANRLFMIIKEFTDPRVDLHPDRVNNLQMGYVFEELVRKFNE 202

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + +E A D  TPR+V+ L   L+   D+ ++  +PG+ RT+YDPTCGTGG L+ +  ++ 
Sbjct: 203 QANEEAGDHFTPREVIRLMAHLMYTEDEDVY--TPGIARTIYDPTCGTGGMLSVSEEYIR 260

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SK 284
           +          L+ +GQE   E++A+C + +LI+    D       NI  G TL    S+
Sbjct: 261 EQNPQAN----LILYGQEYNAESYAICCSDLLIKDEPID-------NIHFGDTLGDGKSE 309

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           D    K+FHY ++NPPFG +W+  +  V+KE     L RFG       DG++L
Sbjct: 310 DGHPDKKFHYMMANPPFGVEWKTQQSIVQKELTRLVLSRFGAA-HAYHDGALL 361


>gi|48243660|gb|AAT40796.1| putative type I restriction-modification system methyltransferase
           protein [Haemophilus influenzae]
          Length = 398

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 198/404 (49%), Gaps = 57/404 (14%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP   L  + P +I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP---LKDQIPAII-TIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------P 329
           + D F G  F + LSNPP+GK W KD+ A  K+       RF   L             P
Sbjct: 296 ATDSFQGNHFDFMLSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAG 371
           + SDG +LFLM + +K++ P +   G R A V + S LF G AG
Sbjct: 355 RSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAG 398


>gi|91215848|ref|ZP_01252817.1| type I restriction-modification system methyltransferase subunit
           [Psychroflexus torquis ATCC 700755]
 gi|91185825|gb|EAS72199.1| type I restriction-modification system methyltransferase subunit
           [Psychroflexus torquis ATCC 700755]
          Length = 693

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 148/488 (30%), Positives = 245/488 (50%), Gaps = 57/488 (11%)

Query: 15  IWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNIDLES 71
           IW+ A+ L G   K +DF K ++PF  L  +E  L      +RE  + +  G S  +++ 
Sbjct: 10  IWETADLLRGAGIKTSDFPKYMMPFFALLMVESRL------IRESKRMVDDGESQDNMDE 63

Query: 72  FVKV-----AGYSFYNTSE-YSLSTLGSTNTRNNL--ESYIASFSDNAKAIF-------- 115
           FV++      GY+ +   E  SL  +   +   ++  +SYI SF    K +         
Sbjct: 64  FVEIFQLEGLGYNDFVIREGKSLKDICKNDKTFDVDFQSYIKSFDAETKYLLGVDKGTEE 123

Query: 116 EDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           E F D S     L+K  +L+   K +S I+L P    +  ++ + EH+ R++    +E A
Sbjct: 124 EKFLDISGISGLLKKKRILFNTVKTWSAIDLTP--YNNSEITTLEEHIKRKWADISAETA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TP D++ L T L+     A   E      ++YDPTCG G  L    + +     + 
Sbjct: 182 GEQYTPDDIISLITELI-----ATRIEDNEQFLSIYDPTCGGGNLLFGVEDKI-----NK 231

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G++     +A+        ++ES  R+D +  I+ G+TL+   F  KRF  
Sbjct: 232 EFNRPTSTFGEDWSDSLYALA-------KIESRFRQDST--IKYGNTLTDINFIEKRFDV 282

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+G  W+      +K+ +N    RF   LP ISDG  LF  H+  +LE      G
Sbjct: 283 IVANPPYGVDWK----GFKKDIENDTTERF-IDLPSISDGQFLFTQHILYQLE----DDG 333

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A +V + S LF+G AGSGES IR+   E D +EAI+ +PTD FF T I TYLW+ +  K
Sbjct: 334 FAVVVHNGSTLFSGDAGSGESNIRKHFFEQDWVEAIIQMPTDEFFNTGIYTYLWVFNKNK 393

Query: 415 TEERRGKVQLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             +R+ KV L+NA+DL+    +++GKKR+ +N D R +I+  +   +  +++++ D   F
Sbjct: 394 KADRKDKVMLLNASDLFEKLKKSKGKKRKKMNADNRAEIVKAFTDYKENEYTKIFDKWEF 453

Query: 474 GYRRIKVL 481
            + +  ++
Sbjct: 454 YFNKQSIM 461


>gi|228475437|ref|ZP_04060155.1| N-6 DNA methylase [Staphylococcus hominis SK119]
 gi|228270219|gb|EEK11654.1| N-6 DNA methylase [Staphylococcus hominis SK119]
          Length = 410

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 167/307 (54%), Gaps = 20/307 (6%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFVKVA-GYSFYNTSEYSLSTLGS--T 94
           T+++RL   L  TR  V +        N +  E  +K A GYSFYNTS Y+  TL +  +
Sbjct: 110 TVIKRLHDTLLKTRDEVIKSAENTQSMNSVMRERLLKNASGYSFYNTSLYTFETLLADPS 169

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPD 152
           N  +N   ++  FS+N + I ++F F   I  +     L+ + + F+ ++  L PD +  
Sbjct: 170 NIESNFRDFLNGFSENMQDILDNFKFDVEITTMTDNDALFYVIQEFNKVDAYLDPDKMTS 229

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYD 211
             M  ++E L+R+F    +E A    T RD+++L T LLL  D + LFKE   + +T+YD
Sbjct: 230 TDMRYVFEKLVRKFSESYNEEAGAHFTSRDIIYLMTDLLLIEDKNTLFKEH--VFKTVYD 287

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            T GT   L+     + D     ++       GQEL PET+A+  A  +IR  E +    
Sbjct: 288 QTMGTSQMLSAMTERIHDVNDTAEVATF----GQELNPETYAIAKADTMIRGGEPE---- 339

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              N+   STL+ D F G  F Y +SNPPFG  W+KD+++V+ EH+  ELGRFG GLP++
Sbjct: 340 ---NMALESTLTNDQFEGFTFDYYISNPPFGVDWKKDQESVKAEHELSELGRFGVGLPRV 396

Query: 332 SDGSMLF 338
           SDG +LF
Sbjct: 397 SDGQLLF 403


>gi|313892812|ref|ZP_07826393.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442743|gb|EFR61154.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 348

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 41/347 (11%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P+ISDG +LFL++  +K++     G R A V ++S LF G AGSGES  RR+++ENDL+
Sbjct: 28  IPRISDGQLLFLLNNVSKMKTDTALGSRIAEVHNASSLFTGDAGSGESNARRYMIENDLV 87

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAI+ALP ++F+ T + T++W+LSN+K + R+GK+QLI+AT + + +R N GKK   ++ 
Sbjct: 88  EAIIALPDNMFYNTPLGTFIWVLSNKKEDRRKGKIQLIDATAMKSPLRKNMGKKNCELSS 147

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-----EAD 501
           D R++I+ I++  E    SR+ D   FG+  + V R L++    D+   + +     EA+
Sbjct: 148 DIRKEIIRIFMDMEESDVSRVFDNDEFGFWLVTVERSLKLRIYPDRKIPSSVFKKEEEAE 207

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           +  R L+ L  +  LD             W          S  AK  K+KA+   I+  I
Sbjct: 208 LVRRTLATLSDNVPLD------------DW----------SAFAKATKLKAA---ILKKI 242

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
             +   +  AD  T V+GE   D   TE     Y   I  +   EV P+ PDA+ D+  I
Sbjct: 243 RPY-ITEKSADAKT-VSGESDADLRTTEIIPFKYEGGIDQFMENEVHPYAPDAWYDEKNI 300

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
                   ++GYE++F ++FY+    R++ +I  ELKG+EA    +L
Sbjct: 301 --------KIGYELSFIKYFYKPMELRQMSEIVEELKGLEADANGML 339


>gi|145631521|ref|ZP_01787289.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982866|gb|EDJ90383.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 483

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 149/494 (30%), Positives = 229/494 (46%), Gaps = 133/494 (26%)

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-------------KISDGSMLFLMHL 342
           LSNPP+GK W KD+ A  K+       RF   LP             + SDG +LFLM +
Sbjct: 2   LSNPPYGKSWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNVETLDATPRSSDGQLLFLMEM 60

Query: 343 ANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            NK++ P N   G R A V + S LF G AGSGES IRR ++E DL+EAIV LP +LF+ 
Sbjct: 61  VNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLLEAIVQLPNNLFYN 120

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYV-- 457
           T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K      +   +I   Y+  
Sbjct: 121 TGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFAPEHIAEITQNYLDF 180

Query: 458 ---SRE-------NGKFSRMLDYRTFGYRRIKVLR--------------PLR-------- 485
              +RE        G  S++ D + FGY ++ + R              PLR        
Sbjct: 181 TAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIAPLRFDKALFEP 240

Query: 486 MSFILDKTG--------LARLEADIT-----------------------WRKLSPLHQSF 514
           M ++  + G        LA+ E +IT                       W K + L Q+ 
Sbjct: 241 MQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQTA 300

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNE--------------------------AKTL 548
              +     QQ   +   +  V+  +K+ +                          AKTL
Sbjct: 301 STLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSWYDENAAKVIAKTL 360

Query: 549 KVKASKSFIVAFINAFGRK-DPRADPVTDVN-------GEWIP---DTNLTEYENVPYLE 597
           K+K ++      ++A  R+   +AD + D         GE++     ++L + E++P  +
Sbjct: 361 KLKPNE------LDALCRRYQCQADELADFGYYATGKAGEYLQYETSSDLRDSESIPLKQ 414

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           +I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R L D+  ++
Sbjct: 415 NIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRHKPLRSLADVAQDI 466

Query: 658 KGVEAQIATLLEEM 671
             +E Q   L+ E+
Sbjct: 467 LALEKQTDGLISEI 480


>gi|283954323|ref|ZP_06371844.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794122|gb|EFC32870.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 335

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 198/383 (51%), Gaps = 58/383 (15%)

Query: 296 LSNPPFGKKWEKDKD--AVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLANKLELPPN 351
           LSNPP+GK WE D+    VEK+  N      RF  G+   SDG M++L+++ +K++    
Sbjct: 2   LSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFRVGITSKSDGQMMYLLNMLSKMKTDSP 61

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R A V + S LFN  + SG + IR+ ++E D +EAIVALPT++F+ T I T++WI++
Sbjct: 62  LGSRIASVHNGSSLFN--SDSGMAAIRKDIIEKDYLEAIVALPTNMFYNTGIPTFIWIIT 119

Query: 412 NRKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           N+K E ++GKV LINAT  + ++ ++   G K+  +  +   +I  +++     K  ++ 
Sbjct: 120 NKKPEHKKGKVWLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENATNKDCKIY 179

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D + FGY +I + +P  +  + D    A+L+            +   L+ L+ + Q    
Sbjct: 180 DNKDFGYTKITIEKPKSIEALKDDEKFAKLK-----------DKEKILEKLQELEQNPQD 228

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           +   E F+         K L VK  KS     I++                     TN T
Sbjct: 229 FKDREEFI---------KFLGVKLKKSEENLIIDS-------------------DKTNNT 260

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
             E +P    IQ Y+  EV P+V +++I         +E   VGYEI FN++FY Y P R
Sbjct: 261 --EKIPLKIDIQSYYDTEVKPYVKNSWI--------ARESASVGYEILFNKYFYTYTPPR 310

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           KL++I+ EL+ +E ++  LL E+
Sbjct: 311 KLEEINNELEKLEKEVQDLLREI 333


>gi|89900159|ref|YP_522630.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89344896|gb|ABD69099.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 697

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 246/516 (47%), Gaps = 64/516 (12%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+  G+     A  IW  A+ L G   K +++   ++PF  L  LE  L   +     +
Sbjct: 1   MTQKIGAGLLEYAGKIWDTADTLRGAGIKESEWPTYMMPFFALMMLESRLRRFKQERIAE 60

Query: 59  YLAFGGSNID---------LESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESY 103
           Y    G+  D         L+   K  G  ++         L  T      N  N L S+
Sbjct: 61  YEEETGAAFDPEDATHAKWLDDTAKAVGKGYHKDLLLHDKGLRETCLVPGGNFLNRLLSH 120

Query: 104 IASFSDNAKAIFEDFDFSSTIAR-LEKAGL-----------LYKICKNFSGIELHPDTVP 151
           + S+  + K +    D++   A+ L+  G            LY   + ++ I+L P    
Sbjct: 121 LNSYDPDTKKLL-GIDYAQGSAKFLDMQGKASDLNARDNNPLYPFAQKWASIDLTP--FD 177

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM--IRTL 209
           +  ++ I EH+ R++    +E A +  TP DV+ LATA++++    L +E  G   I  +
Sbjct: 178 NSEITTIEEHIKRKWADISAETAGEQYTPSDVIDLATAIIIE----LRREGKGGTGIADV 233

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLESDP 268
           YD  CG G FL    + + D       P + V   GQEL     A+         +E+  
Sbjct: 234 YDMACGGGNFLFATEDALRDA-----FPKLSVRTRGQELNDPLFALA-------SIEARF 281

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
           R D    I+ G+TL+ DLF   +F   ++NPP+G  W+  K ++  +      GRF    
Sbjct: 282 RED--AQIEWGNTLTNDLFLLDKFDAIVANPPYGVDWKDFKQSLGMDAS----GRFAKDR 335

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DL 386
           +P  SDG +LFL H A  L    +  G AAIV S S LF+G AG GESE RRWL++  D+
Sbjct: 336 MPPTSDGQLLFLQHAAFHL----SEVGVAAIVHSGSTLFSGDAGGGESETRRWLIQQQDI 391

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT-SIRNEGKKRRIIN 445
           +EAI+ LP + FF T I+TYLWIL+  K + R+GKV LINA D +    +N  KK   I+
Sbjct: 392 VEAIIQLPKNEFFNTGISTYLWILNRAKPQARKGKVLLINAEDQFVKLKKNLNKKNCKID 451

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           +     I+  + + ++G  S++L      Y +++++
Sbjct: 452 EANCAAIVKAFRACKDGPISKVLTVDQLLYNKVEII 487


>gi|88809187|ref|ZP_01124696.1| Type I restriction-modification system M subunit [Synechococcus sp.
           WH 7805]
 gi|88787129|gb|EAR18287.1| Type I restriction-modification system M subunit [Synechococcus sp.
           WH 7805]
          Length = 627

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 222/479 (46%), Gaps = 62/479 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L +F+WK+A+ L G    ++F   I     L+RL  A E  R  V   YL  G S  +
Sbjct: 62  SQLESFLWKSADILRGSMDASEFKDYIFGMLFLKRLSDAFEEAREGVIAYYLGKGKSQSE 121

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE------------ 116
            E          Y+ + Y        N ++      A  +   +AI E            
Sbjct: 122 AEDLAD--DQDEYDKTFYVPEKARWQNLKDLKHDIGAELNKATEAIEEHNRTLEGVLVSI 179

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           DF+  + +   +    L  +  ++S   L + D   D ++   YE+LI+ F     +   
Sbjct: 180 DFNIKNKLNDRK----LRDLLSHYSTFRLRNEDFERDDLLGAAYEYLIKMFADSAGKKGG 235

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP +VV L  ALL        K   GM   +YDPTCG+GG L    N++A   SH +
Sbjct: 236 EFYTPNEVVKLLVALL--------KPHAGM--RVYDPTCGSGGMLIQTRNYLA---SHGE 282

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGK--R 291
            P  L   GQE+   T A+C   M +  +       +S +I++G TL   + +  G+  R
Sbjct: 283 NPANLQLFGQEMNLSTWAICKLNMFLHGV-------ISADIRKGDTLGDPQHVENGEINR 335

Query: 292 FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   ++NPPF  K W +D        +N   GR+  G+P    G + F+ H+ + L    
Sbjct: 336 FDRVIANPPFSLKNWGRDL------AENDGYGRYRYGVPPKDAGDLAFVQHMISSL---- 385

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  G   +V+    LF G     E EIR+ +LE+DLIEA++ LP+ LF+ T I   L IL
Sbjct: 386 NQEGVMGVVVPHGVLFRG---GQEGEIRKGILEDDLIEAVIGLPSGLFYGTGIPAALLIL 442

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
           +  K+ ER+GKV  INA   +     EGK + I+ D+   +++  + S  + K FSR++
Sbjct: 443 NKTKSVERKGKVLFINAELDY----QEGKNQNILRDEDIEKVVGCFDSYNDIKRFSRVV 497


>gi|114778593|ref|ZP_01453420.1| Type I restriction-modification system M subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114551182|gb|EAU53742.1| Type I restriction-modification system M subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 572

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 203/456 (44%), Gaps = 69/456 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L +F+W+ A+ L G+   ++F   I     L+RL  A E  +  V   YL+ G +    
Sbjct: 8   QLESFLWETADILRGNMDASEFKDYIFGMLFLKRLSDAFEEEQEKVVAHYLSVGKTQAQA 67

Query: 70  ESFVK-------------VAGYSFYNT------SEYSLSTLGSTNTRNNLESYIASFSDN 110
           E   +              A +S+         +E + +T         LE  + S   N
Sbjct: 68  EELAQDEDEYDNTFFVPERARWSYLKDLHHDIGAELNKATEAIEEANTTLEGVLVSIDFN 127

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K    D      I+   K  L     ++F      PD     ++   YE+LI+ F    
Sbjct: 128 IKNKLSDKKLRDLISHYSKYRLR---NEDFE----KPD-----LLGTAYEYLIKMFADSA 175

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP +VV L  +LL        K   GM   +YDPT G+GG L    N++A  
Sbjct: 176 GKKGGEFYTPSEVVRLLVSLL--------KPEAGM--RVYDPTVGSGGMLIQTRNYLA-- 223

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFT 288
            SH + P  L  +GQE+   T A+C   M +  +        + +I++G TL     +  
Sbjct: 224 -SHGENPRDLALYGQEMNLNTWAICKMNMFLHGV-------FNADIRKGDTLRDPAHIQH 275

Query: 289 GKRFHY--CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           G+  H+   ++NPPF  KKW KD      E  N   GRF  G P    G + F+ H+   
Sbjct: 276 GELMHFDRVIANPPFSLKKWGKD------EADNDAYGRFPYGTPPKDAGDLAFVQHMIAS 329

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  G+  +V+    LF G   S E  IR+ +L++DL+EA++ LP+ LF+ T I  
Sbjct: 330 L----NAEGKMGVVMPHGVLFRG---SSEKAIRKGILQDDLLEAVIGLPSGLFYGTGIPA 382

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            L I++ +K +ER+GKV  INA   +   +N+ K R
Sbjct: 383 CLLIINKQKADERKGKVLFINAELEYEEGKNQNKLR 418


>gi|117922226|ref|YP_871418.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
 gi|117614558|gb|ABK50012.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
          Length = 574

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 199/447 (44%), Gaps = 51/447 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + YL  G +    
Sbjct: 9   QLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYLGKGKTKEQA 68

Query: 70  ESFVKVAG---YSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFEDFDFS 121
           E+  +       +F+       S L         T N     I  ++ + + +    DF+
Sbjct: 69  EALAQDEDEYDKTFFVPKSARWSALKDLKHDIGATLNKATEAIEEYNSSLEGVLVTIDFN 128

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 +K   L  +  +FS   L  +    PD ++   YE+LI+ F     +   +F T
Sbjct: 129 IKNKLSDKK--LRDLLSHFSKYRLRNEDFERPD-LLGTAYEYLIKMFADSAGKKGGEFYT 185

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +VV L  ALL        K   GM   +YDPT G+GG L    N++A   +H + P  
Sbjct: 186 PSEVVSLLVALL--------KPKAGM--RIYDPTSGSGGMLVQTRNYLA---AHGENPGN 232

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYC 295
           L   GQE+   T A+C   M +  +       LS +I++G TL +   T       F   
Sbjct: 233 LSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGGELMTFDRV 285

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF   KW KD      E  N   GRF  G P    G + F+ H+        N  G
Sbjct: 286 IANPPFSLAKWGKD------ECDNDGFGRFPYGTPPKDAGDLAFVQHMI----ASTNAEG 335

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              +V+    LF G   S E  IR+ +LE+DL+EA++ LP+ LF+ T I   L I++ RK
Sbjct: 336 MVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACLLIINKRK 392

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKR 441
             ER+GKV  IN    +   +N+ K R
Sbjct: 393 AAERKGKVLFINGELEYEEGKNQNKLR 419


>gi|57790478|gb|AAW56179.1| Cj81-118 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 314

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 167/316 (52%), Gaps = 31/316 (9%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + NFIW  A+DL  D +    +  VILP T++RR++  LEPT+  V + Y  +     +L
Sbjct: 9   IVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENL 68

Query: 70  ESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +
Sbjct: 69  ESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQL 128

Query: 125 ARLEKAGLLYKICKNFS------GIELHPD---TVPDRVMSN-----IYEHLIRRFGSEV 170
             LE++ +L+ + + F       GIE   D    V  + +SN     ++E LIR+F  E 
Sbjct: 129 DTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEEN 188

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E A +  TPR+++ L T L+  P     K+   +I   YD  CG+GG LT++   + D 
Sbjct: 189 NEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWLI---YDNACGSGGMLTESKEFITDP 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS D     
Sbjct: 246 EGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSNDQ-QNL 297

Query: 291 RFHYCLSNPPFGKKWE 306
           +F + LSNPP+GK WE
Sbjct: 298 QFDFMLSNPPYGKSWE 313


>gi|317132803|ref|YP_004092117.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470782|gb|ADU27386.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 231

 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 121/206 (58%), Gaps = 7/206 (3%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--AFGGSNIDL 69
           +NFIWK A+ L GDFK +++G VILPFT+L RL+  L PT+  V E +    F      L
Sbjct: 9   SNFIWKIADILRGDFKQSEYGDVILPFTVLCRLDSVLAPTKERVMEIHRQGMFKTEYAKL 68

Query: 70  ESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             F  +  G  FYN SE++ + L   + N  +NL  YI  FS+NA+ I E FD  S IAR
Sbjct: 69  AGFKSITGGLKFYNISEFTFAKLKDDAANIADNLTDYIKGFSENARMILESFDIYSQIAR 128

Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           L+KA LLY +   F   I+LHPD V +  M  I+E LIR+F    +E A +  TPR+V+ 
Sbjct: 129 LDKANLLYLVVTRFVDDIDLHPDRVSNNEMGYIFEELIRKFSEMSNETAGEHFTPREVIR 188

Query: 186 LATALLLDPDDALFKESPGMIRTLYD 211
           L  A+L DPD  L  E PG +  LY+
Sbjct: 189 LMVAMLFDPDMRLITE-PGFMAKLYE 213


>gi|120597148|ref|YP_961722.1| type I restriction-modification system, M subunit [Shewanella sp.
           W3-18-1]
 gi|120557241|gb|ABM23168.1| type I restriction-modification system, M subunit [Shewanella sp.
           W3-18-1]
          Length = 574

 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 130/447 (29%), Positives = 201/447 (44%), Gaps = 51/447 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L +F+W+ A+ L G+   +++   I     L+RL  A E  + +V + YL  G +    
Sbjct: 9   QLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYLDKGKTQEQA 68

Query: 70  ESFVKVAG---YSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFEDFDFS 121
           E+  +       +F+       S L         T N     I  ++ + + +    DF+
Sbjct: 69  EALAQDEDEYDKTFFVPQTARWSELKDLKHDIGATLNKATEAIEEYNSSLEGVLVTIDFN 128

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 +K   L  +  +FS   L  +    PD ++   YE+LI+ F     +   +F T
Sbjct: 129 IKNKLSDKK--LRDLLSHFSKYRLRNEDFERPD-LLGTAYEYLIKMFADSAGKKGGEFYT 185

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +VV L  ALL        K   GM   +YDPT G+GG L    N++A   +H + P  
Sbjct: 186 PSEVVSLLVALL--------KPKAGM--RIYDPTSGSGGMLVQTRNYLA---AHGENPGN 232

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
           L   GQE+   T A+C   M +  +       LS +I++G TL +   T       F   
Sbjct: 233 LSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGGELMAFDRV 285

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF   KW KD      E  N   GRF  G P    G + F+ H+        N  G
Sbjct: 286 IANPPFSLAKWGKD------ECDNDGFGRFPYGTPPKDAGDLAFVQHMI----ASTNAEG 335

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              +V+    LF G   S E  IR+ +LE+DL+EA++ LP+ LF+ T+I   L I++ RK
Sbjct: 336 MVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTSIPACLLIINKRK 392

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKR 441
             +R+GKV  IN    +   +N+ K R
Sbjct: 393 AADRKGKVLFINGELEYEEGKNQNKLR 419


>gi|86145619|ref|ZP_01063949.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
 gi|85836590|gb|EAQ54716.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
          Length = 812

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 217/482 (45%), Gaps = 60/482 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T S   L +F+W++ + L G     D+ + IL    L+RL    E  +  V + Y+  G 
Sbjct: 4   TLSLQQLESFLWESTDILRGSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNGR 63

Query: 65  SNIDLESFVK-----VAGYSFYNTSEYSLST-----LGSTNTRNNLESYIASFSDNAKAI 114
           +    +   +     V  +     + +S  T     +G +  R+ L   I   +   K +
Sbjct: 64  TKEQAKELARNRSEYVNTFFVPENANWSALTNVKEEIGQSLDRSMLA--IEEHNSELKNV 121

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSE 172
               DF     RL  A L   +  +FS   L  +    PD ++   YE+LI+ F      
Sbjct: 122 LTSIDFGKK-TRLSNAQL-RDLVLHFSKCRLLDEDFECPD-ILGKAYEYLIKMFADSAGR 178

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR+VV L  +LL        + S GM  ++YDPT G GG L  + N++ D G 
Sbjct: 179 KGSGFYTPREVVKLMVSLL--------EPSSGM--SVYDPTVGAGGMLVQSRNYLKDIGK 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR- 291
                  L  +GQE+   T  +C   M ++  ES+       +I+ G TL     T    
Sbjct: 229 DVN----LSLYGQEVNQGTWTICRMNMFLQG-ESNV------DIRHGDTLRNPKHTEANR 277

Query: 292 ---FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              F   +S+PPF  K+W  D      E  N   GRF  G+P  + G   F+ H    + 
Sbjct: 278 LITFDRVISHPPFSLKEWGGD------ELSNDTFGRFKYGIPPRNSGDFAFIQHTLATM- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GRA +VL   PL   RAG  E +IRR +LE+D+IEA++ LP  +F+ T I T L
Sbjct: 331 ---NESGRAVVVLPHGPLH--RAGKSELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            IL+  K  ++RGKV  ++A++ + S     K    +  +   +IL  Y   E+ G FSR
Sbjct: 386 LILNKCKGRKQRGKVLFVDASNGFKS----NKWMMELRGEDSEKILKAYGDFESIGSFSR 441

Query: 467 ML 468
           ++
Sbjct: 442 IV 443


>gi|15839313|ref|NP_300001.1| type I restriction-modification system [Xylella fastidiosa 9a5c]
 gi|9187844|gb|AAF85760.1|AE004078_12 type I restriction-modification system [Xylella fastidiosa 9a5c]
          Length = 382

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 181/360 (50%), Gaps = 40/360 (11%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGGSNI 67
           +++FIW  A++   D +    +  VILPFT+LRRL+  LE T+ AV  R+K+L       
Sbjct: 31  ISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEGTKDAVLERKKFLDVHQVAE 90

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
              +    AG +FYN SE++L+ L ++      R++  +Y+  FS + + I   F+F + 
Sbjct: 91  QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSLDVQEILTKFNFRNQ 150

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  + ++F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 151 IQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 210

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT A   +  
Sbjct: 211 NNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGTGGMLTVAEEALHA 267

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++   ++     ++NI  G   STLS D 
Sbjct: 268 LAQQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAE-----AENIVGGADKSTLSADQ 322

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLF 338
           F  + F + +SNPP+GK W+ D + +  +KE  +        G      L + SDG +LF
Sbjct: 323 FPSRAFDFMISNPPYGKSWKTDLERMGGKKEFSDPRFIVSHAGNAEFKLLTRSSDGQLLF 382


>gi|254448309|ref|ZP_05061771.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
 gi|198262176|gb|EDY86459.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
          Length = 580

 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 204/462 (44%), Gaps = 69/462 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T +   L +F+W+ A+ L G+   +++   I     L+RL  A E  + +V + Y+  G 
Sbjct: 4   TITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYMGKGK 63

Query: 65  SNI-------DLESFVK------VAGYSFYNT------SEYSLSTLGSTNTRNNLESYIA 105
           S         D + + K      VA +           +E + +T        +LE  + 
Sbjct: 64  SEDQARELADDEDEYDKTFYIPPVARWGAIKDLKHDIGAELNKATEAIEEHNGSLEGVLV 123

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           S   N K    D      ++   +  L     ++F      PD     ++   YE+LI+ 
Sbjct: 124 SIDFNIKNKLSDKKLQDLLSHFSRHRLR---NEDFE----RPD-----LLGTAYEYLIKM 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TP +VV L  +LL        K   GM   +YDPT G+GG L    N
Sbjct: 172 FADSAGKKGGEFYTPSEVVQLLVSLL--------KPHAGM--RIYDPTAGSGGMLVQTRN 221

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H+A   +H + P  L  +GQE+   T A+C   M +  +        S +I++G TL   
Sbjct: 222 HLA---THGENPSNLSLYGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLRDP 271

Query: 286 LFTGK----RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             T       F   ++NPPF  KKW K+      E +N   GRF  G P    G + F+ 
Sbjct: 272 QHTQGGSLMTFDRVIANPPFSLKKWGKE------EAENDPYGRFPYGTPPKDAGDLAFVQ 325

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L    N  G   +V+    LF G   + E  IR+ +LE+DL+EA+V LP  LF+ 
Sbjct: 326 HMIASL----NAEGMMGVVMPHGVLFRG---ASEKAIRKGILEDDLLEAVVGLPAALFYG 378

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           T I   L I++  K +ER+GKV  IN+   +   +N+ K R+
Sbjct: 379 TGIPACLLIINKNKPQERKGKVLFINSELEYEEGKNQNKLRQ 420


>gi|313892755|ref|ZP_07826336.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442686|gb|EFR61097.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 332

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 158/331 (47%), Gaps = 32/331 (9%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSN 66
           S+ +FIW  A+D   D +    +  VILP T++RRL+  LE T+  V E  K +   G  
Sbjct: 8   SIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEHTKPVVLEMKKKMDEAGIT 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSS 122
               +    AG +F N S + L  L S   +  L    E+Y+  FS N + I   F F +
Sbjct: 68  NQWPALCNAAGQAFCNASPFVLKDLTSRVKKQTLKADFEAYLDGFSPNVQEILAKFQFRN 127

Query: 123 TIARLEKAGLLYKICKNFSG--IELHPDTV--------------PDRVMSNIYEHLIRRF 166
            I  + +A +L  + + F    I L P  +               +  M  ++E L+R+F
Sbjct: 128 QIDTMIEADILGAVIEKFVSPTINLSPKPIYTDDSKNVIKLPALDNHAMGTVFEELVRKF 187

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
               +E A +  TPRDVV L   L+  P   +  E      + YD  CGTGG LT A + 
Sbjct: 188 NEANNEEAGEHWTPRDVVDLMADLIFIP---IADEIKDATYSCYDGACGTGGMLTVAQDR 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +            +   GQE++PET+A+C A ML++        D +++I  GSTLS D 
Sbjct: 245 LTSLAKRRSKEVSIHLFGQEVQPETYAICKADMLLK-----GDGDQAEHIAYGSTLSADG 299

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDA-VEKEH 316
              ++F + L+NPP+GK W+ D +  VEK +
Sbjct: 300 NASRQFDFMLANPPYGKSWKTDAEKWVEKRY 330


>gi|86145620|ref|ZP_01063950.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
 gi|85836591|gb|EAQ54717.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
          Length = 583

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 203/483 (42%), Gaps = 58/483 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +F+W+ A+ L G+   ++F   I     L+R+  A E  +  V   YL  G + 
Sbjct: 6   SLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRMSDAFEEEQEKVIAYYLGKGKTQ 65

Query: 67  IDLESFVKVAGY---SFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFEDF 118
              E           +FY       S L         + N     I   +   + +    
Sbjct: 66  EQAEELANDEDEYDDTFYMPESSRWSALKDLKHNIGESLNKATEAIEEHNSALEGVLVTI 125

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF+  I        L  +  +FS   L  +    PD ++   YE+LI+ F     +   +
Sbjct: 126 DFN--IKNKLTDAKLRDLLSHFSQHRLRNEDFERPD-MLGTAYEYLIKMFADSAGKKGGE 182

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +VV L  ALL        K   GM   +YDPT G+GG L    NH+A  G +   
Sbjct: 183 FYTPSEVVQLLVALL--------KPHAGM--RIYDPTTGSGGMLVQTRNHLAKNGEN--- 229

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              L   GQE+   T A+C   M +  ++S        +I++G TL +   T       F
Sbjct: 230 ASNLSLFGQEMNLNTWAICKMNMFLHGVQS-------ADIRKGDTLREPKHTEGGELMSF 282

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              ++NPPF  KKW KD      E  +   GRF  G P    G + F+ H+        N
Sbjct: 283 DRVIANPPFSLKKWGKD------ECDSDGFGRFPYGTPPKDAGDLAFVQHMI----ASTN 332

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    LF G   S E  IR+ +LE+DL+EA++ LP+ LF+ T I   L I++
Sbjct: 333 NEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACLLIIN 389

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K+  R+GKV  IN+   +   +N+ K R        + I  I  + EN  F    D +
Sbjct: 390 KNKSAARKGKVLFINSELEFEEGKNQNKLR-------EQDITKIVETFENHSFESKCDIK 442

Query: 472 TFG 474
            + 
Sbjct: 443 RYA 445


>gi|209695268|ref|YP_002263197.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238]
 gi|208009220|emb|CAQ79477.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238]
          Length = 587

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 201/490 (41%), Gaps = 72/490 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +F+W+ A+ L G+   ++F   I     L+RL  A E ++  V + YL  G + 
Sbjct: 6   SLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYLDKGKTQ 65

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---------------NNLESYIASFSDNA 111
              E           +  EY  +     N R               N     I  F+   
Sbjct: 66  AQAEELAN-------DEDEYDSTFFIPENARWSVLKDLKHNIGEQLNKATESIEEFNSAL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSE 169
           + +    DF+      +K   L  +  +F+   L  +    PD ++   YE+LI+ F   
Sbjct: 119 EGVLVTIDFNIKNKLSDKK--LQDLLSHFNKYRLRNEDFDRPD-LLGTAYEYLIKMFADS 175

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP +VV L   LL        K   GM   +YDPT G+GG L    N +  
Sbjct: 176 AGKKGGEFYTPSEVVQLLVELL--------KPHAGM--RIYDPTSGSGGMLVQTRNQLEK 225

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      L  +GQE+   T A+C   M +  +++        +I++G TL     T 
Sbjct: 226 QGEN---AANLSLYGQEMNLNTWAICKMNMFLHGVQN-------ADIRKGDTLRDPQHTE 275

Query: 290 ----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 F   ++NPPF  KKW KD      E  N   GRF  G P    G + F+ H+  
Sbjct: 276 GGELMSFDRVIANPPFSLKKWGKD------ECDNDGFGRFPYGTPPKDAGDLAFVQHMI- 328

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                 N  G   +V+    LF G   S E  IR+ +LE+DL+EA+V LP+ LF+ T I 
Sbjct: 329 ---ASTNSEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVVGLPSGLFYGTGIP 382

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             L I++  K   R+GKV  IN    +   +N+ K R          I  I  + EN  F
Sbjct: 383 ACLLIINKNKPSARKGKVLFINGELEFAEGKNQNKLR-------PEDIAKIVTTFENHSF 435

Query: 465 SRMLDYRTFG 474
               D + + 
Sbjct: 436 ESQCDIKRYA 445


>gi|300118615|ref|ZP_07056353.1| type I restriction modification system, methyltransferase subunit
           [Bacillus cereus SJ1]
 gi|298724004|gb|EFI64708.1| type I restriction modification system, methyltransferase subunit
           [Bacillus cereus SJ1]
          Length = 493

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 226/475 (47%), Gaps = 54/475 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID 68
            L + +W++A  + G    +D+   I     L+RL +  +E  +    E+   +G  + D
Sbjct: 8   QLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVETAKRIEEEEQDDYGWYDRD 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTR-NNLESYIASFSDNAKAIFEDFDFSSTIARL 127
              F    G  + +    +     + N     LE    S     + +  + DF+    +L
Sbjct: 68  EHQFFVPEGVRWEDIRSKTQDIGDAINKAFEKLEEENISL----QGVLANIDFNDK-EKL 122

Query: 128 EKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
             + LL ++ ++FS I+L   ++  PD ++   YE+LI++F  +  +   +F TP +VV 
Sbjct: 123 PDS-LLLQLIQHFSKIDLSNASLSEPD-MLGRAYEYLIKQFADDAGKKGGEFYTPSEVVE 180

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   L+        K   GM   + DPT G+GG L  +++++   G +   P  LV HGQ
Sbjct: 181 LIVKLI--------KPEEGM--RVCDPTAGSGGMLIQSVDYIKGKGGN---PRNLVLHGQ 227

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHY--CLSNPPF 301
           E    T A+C   +L+  L SD R      I++G T+   K L  G+   Y   ++NPPF
Sbjct: 228 ERNLNTWAICKMNLLLHGL-SDHR------IEKGDTIREPKLLEEGELILYDRVIANPPF 280

Query: 302 G-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             K W ++      E ++ E GRF  GLP  + G   F+ H+   L    N  G+A +V+
Sbjct: 281 SLKNWGRE------EAESDEYGRFRFGLPPKTAGDYGFIQHMIATL----NHEGKAGVVM 330

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E  IR+ L+E DLIEA++ LP++LF+ T I   + IL+  K+EER+ 
Sbjct: 331 PHGVLFRGGA---EGAIRKGLIEEDLIEAVIGLPSNLFYGTGIPACILILNRNKSEERKN 387

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFG 474
           K+  ++ +  +     EGK +  + D    ++++ Y  + E  K+ R +     G
Sbjct: 388 KIFFLDGSQDY----QEGKNQNTLRDKDIEKVVEAYDKNEEEEKYCRPVGIEEIG 438


>gi|317130967|ref|YP_004097249.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475915|gb|ADU32518.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
          Length = 485

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 202/428 (47%), Gaps = 36/428 (8%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W  A  L G    +DF   I P    +R+    +       E Y    G + D E
Sbjct: 6   LESWLWGAANILRGPVDQSDFKSYIFPMLFFKRISDVYDEELQESMEIY----GEDFDEE 61

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
               +     +N        +G     +++     +  ++   IF D  +S+     ++ 
Sbjct: 62  HRFIIPKGCHWNEVRSVTKNVG-IKILSSIREIEKANPESLYGIFGDTQWSNKDKLTDE- 119

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +L ++ ++FS   L    V    M   YE+LI++F    ++ A +F TPR++V L T +
Sbjct: 120 -ILIELIEHFSQYNLGNKNVKSNTMGQAYEYLIKKFADVANKKAGEFYTPREIVKLMT-M 177

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           LLDP++           ++YDP CGTGG L +A++H+ D     +    L  +GQE    
Sbjct: 178 LLDPEEN---------ESIYDPACGTGGMLLEAVDHLNDTSRDART---LKLYGQEKNLT 225

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK 309
           T ++    + +  LE D +   +  ++  +   +D      F   ++NPPF  K W  + 
Sbjct: 226 TSSIARMNLFLHGLE-DFKIVRNDTLKNPAYFEEDKLM--TFDCVIANPPFSLKSWGYE- 281

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                E K+   GR   G+P  ++G   ++ H+   +E+     GR A+VLS   LF  R
Sbjct: 282 -----EWKDDPYGRNIAGIPPKTNGDYAWVQHMIKSMEMYT---GRMAVVLSQGVLF--R 331

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           AG+ E +IRR LL+ DL++ ++ L  +LF+ TNI+  +      K  +R+GKVQ I+A+ 
Sbjct: 332 AGA-EGKIRRELLQQDLLDTVIGLAPNLFYGTNISACILFFRKDKPVDRKGKVQFIDASQ 390

Query: 430 LWTSIRNE 437
           L+   RN+
Sbjct: 391 LFKKERNQ 398


>gi|77166354|ref|YP_344879.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254435849|ref|ZP_05049356.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
 gi|76884668|gb|ABA59349.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|207088960|gb|EDZ66232.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
          Length = 574

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 197/459 (42%), Gaps = 75/459 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + YL  G ++ + 
Sbjct: 9   QLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYLGKGKTDAEA 68

Query: 70  ESFVK-------------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                             +A +      ++ + T       N     I   + + + +  
Sbjct: 69  RELANDEDEYDKTFYIPPIARWGALKDLKHDIGT-----ELNKATEAIEEVNPSLEGVLV 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYEHLIRRFGSEV 170
             DF+      +K   L  + ++FS   L      HPD     ++   YE+LI+ F    
Sbjct: 124 SIDFNIKNKLSDKK--LRDLLRHFSRHRLRNEDFEHPD-----LLGTAYEYLIKMFADSA 176

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP +VV L  ALL        K   GM   +YDPT G+GG L    N++A  
Sbjct: 177 GKKGGEFYTPSEVVRLLVALL--------KPQAGM--RIYDPTAGSGGMLVQTRNYLARH 226

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L   GQE+   T A+C   M +  +        S +I++G TL +   T  
Sbjct: 227 GEN---PANLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQG 276

Query: 290 ---KRFHYCLSNPPFG-KKW---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                F   ++NPPF  KKW   E DKDA          GRF  G P    G + F+ H+
Sbjct: 277 GELMTFDRVIANPPFSLKKWGKDEADKDAY---------GRFPYGTPPKDAGDLAFVQHM 327

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L    N  G   +V+    LF G   + E  IR+ +L++DL+EA++ LP  LF+ T 
Sbjct: 328 IASL----NAEGMMGVVMPHGVLFRG---ASEKAIRQGILKDDLLEAVIGLPAALFYGTG 380

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           I   L IL+  K  ER GKV  IN    +   +N+ K R
Sbjct: 381 IPACLLILNKNKPAERTGKVLFINGELEFQEGKNQNKLR 419


>gi|120555301|ref|YP_959652.1| type I restriction-modification system, M subunit [Marinobacter
           aquaeolei VT8]
 gi|120325150|gb|ABM19465.1| type I restriction-modification system, M subunit [Marinobacter
           aquaeolei VT8]
          Length = 574

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 201/453 (44%), Gaps = 61/453 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-- 67
            L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + Y+  G +    
Sbjct: 9   QLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYMDKGKTEDQA 68

Query: 68  -----DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                D + + K      VA +      ++ + +  +T T       I  ++   + +  
Sbjct: 69  RELADDEDEYDKTFYIPPVARWGVIKDLKHDIGSGLNTATEA-----IEEYNPVLEGVLV 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGA 174
             DF+      +K   L  +  +FS   L  +    PD ++   YE+LI+ F     +  
Sbjct: 124 SIDFNIKNKLSDKK--LRDLLSHFSRYRLRNEDFERPD-LLGTAYEYLIKMFADSAGKKG 180

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +VV L  ALL        K   GM   +YDPT G+GG L    N++A   +H 
Sbjct: 181 GEFYTPSEVVQLLVALL--------KPHAGM--RIYDPTAGSGGMLVQTRNYLA---AHG 227

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           + P  L   GQE+   T A+C   M +  +        S +I++G TL +   T      
Sbjct: 228 ENPSNLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGGELM 280

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            F   ++NPPF  KKW K+      E      GRF  G P    G + F+ H+   L   
Sbjct: 281 TFDRVIANPPFSLKKWGKE------EADGDSYGRFPYGTPPKDAGDLAFVQHMIASL--- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  G   +V+    LF G   S E  IR+ +L +DL+EA+V LP  LF+ T I   L I
Sbjct: 332 -NSEGMMGVVMPHGVLFRG---SSEKAIRQGILNDDLLEAVVGLPAALFYGTGIPACLLI 387

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  K  ER+GKV  IN+   +   +N+ K R+
Sbjct: 388 INKNKPAERKGKVLFINSELEYEEGKNQNKLRQ 420


>gi|124008029|ref|ZP_01692728.1| type I restriction-modification system specificity subunit
           [Microscilla marina ATCC 23134]
 gi|123986443|gb|EAY26249.1| type I restriction-modification system specificity subunit
           [Microscilla marina ATCC 23134]
          Length = 921

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 215/491 (43%), Gaps = 72/491 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECALEPTRSAVREKYLAFGG 64
           A L NF+++  + L G+   +++ + I     L+RL    E   E  R A+ +K LA   
Sbjct: 8   AWLENFLFQACDILRGNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKKGLA--- 64

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED------- 117
           + +   +  K   Y +Y       +     +   +L+ ++    + A A  ED       
Sbjct: 65  AEVVARALNKANAYDYYIPEN---ARWKGKDGIQHLKKHVGDALNKALAAIEDANLDKLS 121

Query: 118 -----FDFSSTIARLEKA---GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFG 167
                 DF+ TI + +K      L    ++F  ++L  +    PD ++   YE+LI+ F 
Sbjct: 122 GVLKSIDFNRTIGKNKKTLDDTKLINFIQHFDTVDLRDENFEFPD-ILGAAYEYLIKFFA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP +VV L   LL           P     +YDPTCG+GG L    N+V
Sbjct: 181 DSAGKKGGEFYTPAEVVKLMVQLL----------EPAPNAEVYDPTCGSGGMLIQCKNYV 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               + +     L  +GQEL   T A+C   ML   +           I+QG T++  L 
Sbjct: 231 E---ARYNNASKLSFYGQELSGTTWALCKMNMLFHDI-------YDAKIEQGDTINNPLH 280

Query: 288 TG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 +RF   ++NPPF   +++D          G   RF   +P+ S    +F+ H+ 
Sbjct: 281 VVDGELQRFDVVMANPPFSADYKQDNII-------GFKDRFRHWMPEKSKADFMFVQHMV 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GR  +V+    LF G   S E ++R WLLE   ++A++ LP  LF+ T I
Sbjct: 334 RVLK----DNGRMGVVMPHGVLFRG---STEKDMRHWLLERGYLDAVIGLPASLFYGTGI 386

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              L I+ N+K  ++R KV  INA   +   +N+ K R     +   +I  +Y  R+   
Sbjct: 387 PASL-IIINKKGADKRRKVLFINADREYKEEKNQNKLR----PEDISKITYVYHQRQELP 441

Query: 463 KFSRMLDYRTF 473
           ++SR++ Y  F
Sbjct: 442 QYSRLMSYNDF 452


>gi|295696354|ref|YP_003589592.1| type I restriction-modification system, M subunit [Bacillus tusciae
           DSM 2912]
 gi|295411956|gb|ADG06448.1| type I restriction-modification system, M subunit [Bacillus tusciae
           DSM 2912]
          Length = 493

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 220/471 (46%), Gaps = 56/471 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID 68
            L + +W++A  L G    +D+   I     L+RL +  +E  +   RE    +G  + D
Sbjct: 8   QLESHLWESANILRGHIDSSDYKHYIFGMLFLKRLNDVFIEKAKEIEREYGQDYGWYDRD 67

Query: 69  LESFV--KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              F   + A +S+  +    + T       N+    +   +   + +    DF+    R
Sbjct: 68  EHQFFVPEEARWSYLYSKTQDIGT-----AINHAFELLEDENPQLQGVLRSIDFNDK-ER 121

Query: 127 LEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L  A  + ++ ++FS I+L    +  PD ++   YE+LI+ F  +  +   +F TP  VV
Sbjct: 122 LPDA-TISRLMQHFSEIDLSNANLSEPD-ILGRAYEYLIKMFADDAGKKGGEFYTPSKVV 179

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+        K   GM   + DPT G+GG L  +++++   G +   P  +  HG
Sbjct: 180 ELIVKLI--------KPQEGM--RICDPTAGSGGMLIQSVDYIKAAGGN---PQNVTLHG 226

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHY--CLSNPP 300
           QE    T A+C   +L+  L SD R      I++G TL   K +  G+   Y   ++NPP
Sbjct: 227 QEKNLNTWAICKMNLLLHGL-SDHR------IEKGDTLRDPKLVQDGELILYDRVIANPP 279

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  K W ++      E +    GRF  GLP    G + F+ H+   L    N  G+A +V
Sbjct: 280 FSLKGWGRE------EAEADPYGRFRFGLPPKDKGDLAFVQHMIATL----NHEGKAGVV 329

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF G A   E +IR+ +L  DL+EA++ LP +LF+ T I   + + S  K   +R
Sbjct: 330 MPHGVLFRGGA---EEQIRKGILGEDLLEAVIGLPANLFYGTGIPACILMFSRSKEPHKR 386

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
           GKV  +N  + +     EGK +  + D+  R+I+  Y + ++  K+ R++D
Sbjct: 387 GKVFFLNGANDY----QEGKNQNFLRDEDIRKIVSAYDTWQDVDKYCRVVD 433


>gi|229164778|ref|ZP_04292610.1| Type I restriction-modification system, M subunit [Bacillus cereus
           R309803]
 gi|228618681|gb|EEK75675.1| Type I restriction-modification system, M subunit [Bacillus cereus
           R309803]
          Length = 493

 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 217/458 (47%), Gaps = 57/458 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID 68
            L + +W++A  + G    +D+   I     L+RL +  +E  +    E+   +G  + D
Sbjct: 8   QLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVETAKRIEVEEQDDYGWYDRD 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTR-NNLESYIASFSDNAKAIFEDFDFSSTIARL 127
              F    G  + +    +     + N     LE    S     + +  + DF+      
Sbjct: 68  EHQFFVPEGARWEDIHSKTQDIGDAINKAFEKLEEENVSL----QGVLANIDFNDK---- 119

Query: 128 EKA--GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           EK    LL ++ ++FS I+L    +  PD ++   YE+LI++F  +  +   +F TP  V
Sbjct: 120 EKLPDNLLLQLIQHFSKIDLSNANLSEPD-MLGRAYEYLIKQFADDSGKKGGEFYTPSKV 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   L+        K   GM   + DPT G+GG L  +++++ + G +   P  LV H
Sbjct: 179 VELIVKLI--------KPEEGM--RVCDPTAGSGGMLIQSVDYIKEKGGN---PRNLVLH 225

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHY--CLSNP 299
           GQE    T A+C   +L+  L SD R      I++G T+   K L  G+   Y   ++NP
Sbjct: 226 GQERNLNTWAICKMNLLLHGL-SDHR------IEKGDTIREPKLLEEGELVLYDRVIANP 278

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF  K W ++      E ++ + GRF  GLP  + G   F+ H+   L    N  G+A +
Sbjct: 279 PFSLKNWGRE------EAESDQYGRFRFGLPPKTAGDYGFIQHMIATL----NHEGKAGV 328

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF G A   E  IR+ ++E DLIEA++ LP++LF+ T I   + +L+  K+EER
Sbjct: 329 VMPHGVLFRGAA---EGTIRKRIIEEDLIEAVIGLPSNLFYGTGIPACILLLNRNKSEER 385

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + K+  ++ +  +     EGK +  + D   +++ + Y
Sbjct: 386 KNKIFFLDGSQDY----QEGKNQNTLRDQDIKKVTEAY 419


>gi|294495709|ref|YP_003542202.1| type I restriction-modification system, M subunit
           [Methanohalophilus mahii DSM 5219]
 gi|292666708|gb|ADE36557.1| type I restriction-modification system, M subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 494

 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 135/522 (25%), Positives = 232/522 (44%), Gaps = 63/522 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGS 65
           S + L  ++W  A  L G    +DF   I P    +R+ +   E  R A+ E      G 
Sbjct: 5   SLSELEQYLWDAANILRGPVDASDFKAYIFPLLFFKRISDVYDEEYRQALDE-----SGG 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFEDFDFS 121
           + +  SF ++  Y     + ++     STN    L+           D    IF D ++ 
Sbjct: 60  DEEYASFPELHDYIIPEGAHWNDVKDTSTNVGQALQHAFREIEKANQDKLYEIFGDVNWG 119

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  +  +FS   L    V   ++   YE+LI++F    +  A +F TPR
Sbjct: 120 NK-ERLSDE-LLNDLINHFSSKNLSKSYVEPDMLGQAYEYLIKKFADLTNRKAGEFYTPR 177

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL   +L           P    ++YDP CG+GG L +A+++V   G   +    L 
Sbjct: 178 TVVHLMGNIL----------KPQEKESIYDPACGSGGMLLEAVHYVNSSGGDERT---LK 224

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDP--RRDLSKN--IQQGSTLSKDLFTGKRFHYCLS 297
            +GQE    T ++    + +  ++     R D  +N    +G  LS+       F   ++
Sbjct: 225 LYGQEKNLTTSSIARINLFLHGIQDFQIIRGDTLRNPSFHEGDQLSQ-------FDIVIA 277

Query: 298 NPPFG-KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPF  K W +       EH  +   GR   G P  S+G   ++ H+ + +  P  G  R
Sbjct: 278 NPPFSLKNWGQ-------EHWSHDPFGRNIAGTPPKSNGDYAWVQHMISSM-APVTG--R 327

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AIVL    LF G A   E +IR+ L+END++EA++ L  +LF+ T I+  + +   RK 
Sbjct: 328 MAIVLPHGALFRGAA---EGKIRKKLIENDMLEAVIGLGPNLFYGTGISACILVFRARKD 384

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474
           E R+ KV  I+A++ +     +G+ +     +    +LD Y   E+ +  S+++D +   
Sbjct: 385 ESRKNKVLFIDASEQF----QKGRNQNFFLQEHADNVLDWYEKYEDVEDISKLVDIKEIE 440

Query: 475 YRR--IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                + + R +R   ++++  L       T+++L+  +  F
Sbjct: 441 ENEFNLNISRYVRKKLVVEEIDLEE-----TFQELNQAYDEF 477


>gi|15789429|ref|NP_279253.1| RmeM [Halobacterium sp. NRC-1]
 gi|10579755|gb|AAG18733.1| type I restriction modification enzyme, M subunit [Halobacterium
           sp. NRC-1]
          Length = 499

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 154/316 (48%), Gaps = 42/316 (13%)

Query: 127 LEKAGL----LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +E  GL    L K+ ++ S  +L  D+VP  ++   Y  L+R F  E  +    F TP  
Sbjct: 115 MEAGGLTDDRLIKLVEHLSTYDLDRDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPH 174

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   L+ D  D +         T +DPT G+GG LT+A  +  +       P  L  
Sbjct: 175 IVQLCVRLVDDFADGM---------TFHDPTVGSGGMLTEAAKYYREAQGGD--PSKLTF 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
            GQE+ P+  A+    + +  L  +        I++G +L+   FT     +RF   L+N
Sbjct: 224 TGQEINPDIAAIARMNLSLHTLNGE--------IERGDSLASPGFTDGDDLERFDRVLAN 275

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELPPNG---G 353
            PF   W KD      + ++ + GRF     LP+   G   F+MH+A +L+ P  G   G
Sbjct: 276 FPFSADWAKD------DLQDDQYGRFDWHTKLPRADRGDYAFIMHIAEQLKEPDCGDESG 329

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AAIV+    LF       E   R+ +LENDL+EAIV LP +LF   +I + + +L+  
Sbjct: 330 GKAAIVIPHGVLFRKH----EQRYRQPMLENDLVEAIVGLPENLFQNNSIPSAILVLNTD 385

Query: 414 KTEERRGKVQLINATD 429
           K  +R G+VQ I+A D
Sbjct: 386 KPADREGEVQFIHAAD 401


>gi|257051192|ref|YP_003129025.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940]
 gi|256689955|gb|ACV10292.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940]
          Length = 493

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 147/303 (48%), Gaps = 39/303 (12%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++ ++ S I+L  D+VP  ++   Y  L+R F  E  +    F TP  +V L   LL 
Sbjct: 126 LTRLIEHLSTIDLDNDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPHIVELMVRLL- 184

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
               A F++      T +DPT G+GG L +A  H  D       P  L   GQE+ P+  
Sbjct: 185 ----APFEDGD----TFHDPTVGSGGMLVEAATHYRD--EQGGDPSKLTFTGQEINPDIA 234

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCLSNPPFGKKWEKD 308
           A+    + I  L        S  I++  +L +  FT      +F Y L+N PF   W+KD
Sbjct: 235 AIAKMNLSIHGL--------SGRIEREDSLLRPQFTENGELTKFDYVLANFPFSADWQKD 286

Query: 309 KDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                 E ++   GRF     LP+   G   F+MH+A +L    N  G+AAIV+    LF
Sbjct: 287 ------ELQDDTYGRFDWHEKLPRADRGDYAFIMHMAEQL----NETGQAAIVIPHGVLF 336

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                  ES  R  +LENDL+EAIV LP +LF   +I + + +L+  K  ER G+VQ I+
Sbjct: 337 RKH----ESRYREPMLENDLVEAIVGLPENLFQNNSIPSAILLLNTDKPAEREGEVQFIH 392

Query: 427 ATD 429
           A D
Sbjct: 393 AAD 395


>gi|163844960|ref|YP_001622615.1| type I restriction-modification system, M subunit [Brucella suis
           ATCC 23445]
 gi|163675683|gb|ABY39793.1| type I restriction-modification system, M subunit [Brucella suis
           ATCC 23445]
          Length = 508

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 217/476 (45%), Gaps = 49/476 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 9   LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 65

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F  V    + +  +    T G  +  N   + I   + + + +  + DF+S  +
Sbjct: 66  DPDEHEFFLVERARWSSIKKL---TTGIGDHLNKACAAIEDANPSIEGVLANIDFNSE-S 121

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +   +F T
Sbjct: 122 RLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKGGEFYT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P  VV L   LL           PGM   + DPTCG+GG L     HVA   G       
Sbjct: 181 PHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKRLGEAL 230

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F Y   +
Sbjct: 231 NITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFLYDRVI 286

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  G  
Sbjct: 287 ANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NAKGVC 341

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  K  
Sbjct: 342 GVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKAT 398

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYR 471
           ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D +
Sbjct: 399 ERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMK 450


>gi|254712613|ref|ZP_05174424.1| type I restriction-modification system methylation subunit
           [Brucella ceti M644/93/1]
 gi|254715684|ref|ZP_05177495.1| type I restriction-modification system methylation subunit
           [Brucella ceti M13/05/1]
 gi|261217433|ref|ZP_05931714.1| type I restriction modification system protein [Brucella ceti
           M13/05/1]
 gi|261320307|ref|ZP_05959504.1| type I restriction modification system protein [Brucella ceti
           M644/93/1]
 gi|260922522|gb|EEX89090.1| type I restriction modification system protein [Brucella ceti
           M13/05/1]
 gi|261292997|gb|EEX96493.1| type I restriction modification system protein [Brucella ceti
           M644/93/1]
          Length = 508

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 217/476 (45%), Gaps = 49/476 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 9   LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 65

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F  V    + +  +    T G  +  N   + I   + + + +  + DF+S  +
Sbjct: 66  DPDEHEFFLVERARWSSIKKL---TTGIGDHLNKACAAIEDANPSIEGVLANIDFNSE-S 121

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +   +F T
Sbjct: 122 RLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKGGEFYT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P  VV L   LL           PGM   + DPTCG+GG L     HVA   G       
Sbjct: 181 PHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKRLGEAL 230

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F Y   +
Sbjct: 231 NITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFLYDRVI 286

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  G  
Sbjct: 287 ANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTKGVC 341

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            IV+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  K  
Sbjct: 342 GIVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKAT 398

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYR 471
           ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D +
Sbjct: 399 ERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMK 450


>gi|148558226|ref|YP_001257779.1| type I restriction-modification system, M subunit [Brucella ovis
           ATCC 25840]
 gi|148369511|gb|ABQ62383.1| type I restriction-modification system, M subunit [Brucella ovis
           ATCC 25840]
          Length = 523

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 218/476 (45%), Gaps = 49/476 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 24  LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 80

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F  V    + +  +    T G  +  N   + I   + + + +  + DF+S  +
Sbjct: 81  DPDEHEFFLVERARWSSIKKL---TTGIGDHLNKACAAIEDANPSIEGVLANIDFNSE-S 136

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +   +F T
Sbjct: 137 RLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKGGEFYT 195

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P+ VV L   LL           PGM   + DPTCG+GG L     HVA   G       
Sbjct: 196 PQHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKRLGEAL 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F Y   +
Sbjct: 246 NITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFLYDRVI 301

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  G  
Sbjct: 302 ANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTKGVC 356

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  K  
Sbjct: 357 GVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKAT 413

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYR 471
           ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D +
Sbjct: 414 ERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMK 465


>gi|225629306|ref|ZP_03787339.1| type I restriction-modification system, M subunit [Brucella ceti
           str. Cudo]
 gi|225615802|gb|EEH12851.1| type I restriction-modification system, M subunit [Brucella ceti
           str. Cudo]
          Length = 523

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 222/481 (46%), Gaps = 59/481 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 24  LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 80

Query: 66  NIDLESF--VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDF 120
           + D   F  VK A +S       S+  L +T   ++L    A+  D   + + +  + DF
Sbjct: 81  DPDEHEFFLVKRARWS-------SIKKL-TTGIGDHLNKACAAIEDANPSIEGVLANIDF 132

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGA 174
           +S  +RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +  
Sbjct: 133 NSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKG 190

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL           PGM   + DPTCG+GG L     HVA   G  
Sbjct: 191 GEFYTPHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKR 240

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F 
Sbjct: 241 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFL 296

Query: 294 Y--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           Y   ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N
Sbjct: 297 YDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----N 351

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+
Sbjct: 352 TKGVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILN 408

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470
             K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D 
Sbjct: 409 KAKATERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDM 464

Query: 471 R 471
           +
Sbjct: 465 K 465


>gi|260167612|ref|ZP_05754423.1| type I restriction-modification system methylation subunit
           [Brucella sp. F5/99]
 gi|261757035|ref|ZP_06000744.1| type I restriction-modification system protein [Brucella sp. F5/99]
 gi|261737019|gb|EEY25015.1| type I restriction-modification system protein [Brucella sp. F5/99]
          Length = 508

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 222/481 (46%), Gaps = 59/481 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 9   LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 65

Query: 66  NIDLESF--VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDF 120
           + D   F  VK A +S       S+  L +T   ++L    A+  D   + + +  + DF
Sbjct: 66  DPDEHEFFLVKRARWS-------SIKKL-TTGIGDHLNKACAAIEDANPSIEGVLANIDF 117

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGA 174
           +S  +RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +  
Sbjct: 118 NSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL           PGM   + DPTCG+GG L     HVA   G  
Sbjct: 176 GEFYTPHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F 
Sbjct: 226 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFL 281

Query: 294 Y--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           Y   ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N
Sbjct: 282 YDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----N 336

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+
Sbjct: 337 TKGVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILN 393

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470
             K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D 
Sbjct: 394 KAKATERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDM 449

Query: 471 R 471
           +
Sbjct: 450 K 450


>gi|17988796|ref|NP_541429.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|297249369|ref|ZP_06933070.1| type I restriction-modification system, M subunit [Brucella abortus
           bv. 5 str. B3196]
 gi|17984614|gb|AAL53693.1| type i restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|297173238|gb|EFH32602.1| type I restriction-modification system, M subunit [Brucella abortus
           bv. 5 str. B3196]
          Length = 518

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 217/476 (45%), Gaps = 49/476 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 19  LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F  V    + +  +    T G  +  N   + I   + + + +  + DF+S  +
Sbjct: 76  DPDEHEFFLVERARWSSIKKL---TTGIGDHLNKACAAIEDANPSIEGVLANIDFNSE-S 131

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +   +F T
Sbjct: 132 RLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKGGEFYT 190

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P  VV L   LL           PGM   + DPTCG+GG L     HVA   G       
Sbjct: 191 PHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKRLGEAL 240

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F Y   +
Sbjct: 241 NITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFLYDRVI 296

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  G  
Sbjct: 297 ANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTKGVC 351

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  K  
Sbjct: 352 GVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKAT 408

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYR 471
           ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D +
Sbjct: 409 ERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMK 460


>gi|23500570|ref|NP_700010.1| type I restriction-modification system, M subunit [Brucella suis
           1330]
 gi|62317328|ref|YP_223181.1| HsdM restriction-modification system, M subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269309|ref|YP_418600.1| N-6 adenine-specific DNA methylase [Brucella melitensis biovar
           Abortus 2308]
 gi|161620897|ref|YP_001594783.1| type I restriction-modification system, M subunit [Brucella canis
           ATCC 23365]
 gi|189022583|ref|YP_001932324.1| type I restriction-modification system, M subunit [Brucella abortus
           S19]
 gi|225686602|ref|YP_002734574.1| type I restriction-modification system, M subunit [Brucella
           melitensis ATCC 23457]
 gi|254690828|ref|ZP_05154082.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 6 str. 870]
 gi|254695864|ref|ZP_05157692.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 3 str. Tulya]
 gi|254698609|ref|ZP_05160437.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700051|ref|ZP_05161879.1| type I restriction-modification system methylation subunit
           [Brucella suis bv. 5 str. 513]
 gi|254703171|ref|ZP_05164999.1| type I restriction-modification system methylation subunit
           [Brucella suis bv. 3 str. 686]
 gi|254705683|ref|ZP_05167511.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis M163/99/10]
 gi|254710914|ref|ZP_05172725.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis B2/94]
 gi|254732056|ref|ZP_05190634.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 4 str. 292]
 gi|256015604|ref|YP_003105613.1| type I restriction-modification system, M subunit [Brucella microti
           CCM 4915]
 gi|256029298|ref|ZP_05442912.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis M292/94/1]
 gi|256043713|ref|ZP_05446636.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058986|ref|ZP_05449197.1| type I restriction-modification system methylation subunit
           [Brucella neotomae 5K33]
 gi|256111244|ref|ZP_05452275.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 3 str. Ether]
 gi|256157493|ref|ZP_05455411.1| type I restriction-modification system methylation subunit
           [Brucella ceti M490/95/1]
 gi|256253530|ref|ZP_05459066.1| type I restriction-modification system methylation subunit
           [Brucella ceti B1/94]
 gi|256256010|ref|ZP_05461546.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 9 str. C68]
 gi|256262259|ref|ZP_05464791.1| type I restriction-modification system protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260544565|ref|ZP_05820386.1| type I restriction-modification system protein [Brucella abortus
           NCTC 8038]
 gi|260564900|ref|ZP_05835385.1| type I restriction-modification system protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260567901|ref|ZP_05838370.1| type I restriction-modification system protein [Brucella suis bv. 4
           str. 40]
 gi|260756406|ref|ZP_05868754.1| type I restriction modification system protein [Brucella abortus
           bv. 6 str. 870]
 gi|260759838|ref|ZP_05872186.1| type I restriction modification system protein [Brucella abortus
           bv. 4 str. 292]
 gi|260763077|ref|ZP_05875409.1| type I restriction modification system protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260882230|ref|ZP_05893844.1| type I restriction modification system protein [Brucella abortus
           bv. 9 str. C68]
 gi|261216284|ref|ZP_05930565.1| type I restriction modification system protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|261220660|ref|ZP_05934941.1| type I restriction modification system protein [Brucella ceti
           B1/94]
 gi|261313103|ref|ZP_05952300.1| type I restriction modification system protein [Brucella
           pinnipedialis M163/99/10]
 gi|261318497|ref|ZP_05957694.1| type I restriction modification system protein [Brucella
           pinnipedialis B2/94]
 gi|261322930|ref|ZP_05962127.1| type I restriction modification system protein [Brucella neotomae
           5K33]
 gi|261750534|ref|ZP_05994243.1| type I restriction modification system protein [Brucella suis bv. 5
           str. 513]
 gi|261753793|ref|ZP_05997502.1| type I restriction modification system protein [Brucella suis bv. 3
           str. 686]
 gi|265986295|ref|ZP_06098852.1| type I restriction modification system protein [Brucella
           pinnipedialis M292/94/1]
 gi|265990135|ref|ZP_06102692.1| type I restriction modification system protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265992757|ref|ZP_06105314.1| type I restriction modification system protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265995990|ref|ZP_06108547.1| type I restriction modification system protein [Brucella ceti
           M490/95/1]
 gi|294853394|ref|ZP_06794066.1| type I restriction-modification system protein [Brucella sp. NVSL
           07-0026]
 gi|23464207|gb|AAN34015.1| type I restriction-modification system, M subunit [Brucella suis
           1330]
 gi|62197521|gb|AAX75820.1| HsdM, type I restriction-modification system, M subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82939583|emb|CAJ12563.1| N-6 Adenine-specific DNA methylase:N6 adenine-specific DNA
           methyltransferase, N12 class:N-6 DNA methylase:Type I
           restriction- [Brucella melitensis biovar Abortus 2308]
 gi|161337708|gb|ABX64012.1| type I restriction-modification system, M subunit [Brucella canis
           ATCC 23365]
 gi|189021157|gb|ACD73878.1| type I restriction-modification system, M subunit [Brucella abortus
           S19]
 gi|225642707|gb|ACO02620.1| type I restriction-modification system, M subunit [Brucella
           melitensis ATCC 23457]
 gi|255998264|gb|ACU49951.1| type I restriction-modification system, M subunit [Brucella microti
           CCM 4915]
 gi|260097836|gb|EEW81710.1| type I restriction-modification system protein [Brucella abortus
           NCTC 8038]
 gi|260152543|gb|EEW87636.1| type I restriction-modification system protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154566|gb|EEW89647.1| type I restriction-modification system protein [Brucella suis bv. 4
           str. 40]
 gi|260670156|gb|EEX57096.1| type I restriction modification system protein [Brucella abortus
           bv. 4 str. 292]
 gi|260673498|gb|EEX60319.1| type I restriction modification system protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260676514|gb|EEX63335.1| type I restriction modification system protein [Brucella abortus
           bv. 6 str. 870]
 gi|260871758|gb|EEX78827.1| type I restriction modification system protein [Brucella abortus
           bv. 9 str. C68]
 gi|260917891|gb|EEX84752.1| type I restriction modification system protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260919244|gb|EEX85897.1| type I restriction modification system protein [Brucella ceti
           B1/94]
 gi|261297720|gb|EEY01217.1| type I restriction modification system protein [Brucella
           pinnipedialis B2/94]
 gi|261298910|gb|EEY02407.1| type I restriction modification system protein [Brucella neotomae
           5K33]
 gi|261302129|gb|EEY05626.1| type I restriction modification system protein [Brucella
           pinnipedialis M163/99/10]
 gi|261740287|gb|EEY28213.1| type I restriction modification system protein [Brucella suis bv. 5
           str. 513]
 gi|261743546|gb|EEY31472.1| type I restriction modification system protein [Brucella suis bv. 3
           str. 686]
 gi|262550287|gb|EEZ06448.1| type I restriction modification system protein [Brucella ceti
           M490/95/1]
 gi|262763627|gb|EEZ09659.1| type I restriction modification system protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263000804|gb|EEZ13494.1| type I restriction modification system protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263091975|gb|EEZ16281.1| type I restriction-modification system protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264658492|gb|EEZ28753.1| type I restriction modification system protein [Brucella
           pinnipedialis M292/94/1]
 gi|294819049|gb|EFG36049.1| type I restriction-modification system protein [Brucella sp. NVSL
           07-0026]
 gi|326410992|gb|ADZ68056.1| type I restriction-modification system, M subunit [Brucella
           melitensis M28]
 gi|326554283|gb|ADZ88922.1| type I restriction-modification system, M subunit [Brucella
           melitensis M5-90]
          Length = 508

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 217/476 (45%), Gaps = 49/476 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 9   LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 65

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F  V    + +  +    T G  +  N   + I   + + + +  + DF+S  +
Sbjct: 66  DPDEHEFFLVERARWSSIKKL---TTGIGDHLNKACAAIEDANPSIEGVLANIDFNSE-S 121

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +   +F T
Sbjct: 122 RLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKGGEFYT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P  VV L   LL           PGM   + DPTCG+GG L     HVA   G       
Sbjct: 181 PHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKRLGEAL 230

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F Y   +
Sbjct: 231 NITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFLYDRVI 286

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  G  
Sbjct: 287 ANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTKGVC 341

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  K  
Sbjct: 342 GVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKAT 398

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYR 471
           ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D +
Sbjct: 399 ERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMK 450


>gi|237816883|ref|ZP_04595875.1| type I restriction-modification system, M subunit [Brucella abortus
           str. 2308 A]
 gi|237787696|gb|EEP61912.1| type I restriction-modification system, M subunit [Brucella abortus
           str. 2308 A]
          Length = 523

 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 217/476 (45%), Gaps = 49/476 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKYLAFGGS 65
           L N +WK+A+ L G    +D+   I  F  L+RL     E A E  R  + E  +A+  S
Sbjct: 24  LENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPEN-VAY--S 80

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F  V    + +  +    T G  +  N   + I   + + + +  + DF+S  +
Sbjct: 81  DPDEHEFFLVERARWSSIKKL---TTGIGDHLNKACAAIEDANPSIEGVLANIDFNSE-S 136

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           RL  A    G+L ++  +FS I+L   ++  PD ++   YE+LI +F  +  +   +F T
Sbjct: 137 RLGDAKNREGVLSRLIDHFSRIDLSNASLSEPD-MLGRAYEYLIDKFADDAGKKGGEFYT 195

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P  VV L   LL           PGM   + DPTCG+GG L     HVA   G       
Sbjct: 196 PHHVVRLIVELL--------APKPGM--RISDPTCGSGGMLVQVAEHVAKLEGKRLGEAL 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQE    T A+    +L+  L  D R +    I+    L +D   G  F Y   +
Sbjct: 246 NITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQD---GNLFLYDRVI 301

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  G  
Sbjct: 302 ANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTKGVC 356

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  K  
Sbjct: 357 GVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKAT 413

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYR 471
           ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D +
Sbjct: 414 ERKGRVLFIHGAKEF----EERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMK 465


>gi|24371979|ref|NP_716021.1| type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
 gi|24345831|gb|AAN53466.1|AE015486_7 type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
          Length = 585

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 192/436 (44%), Gaps = 67/436 (15%)

Query: 29  TDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------------KV 75
           ++F   I     L+RL  + +  R  V E YLA G + ++ E+               +V
Sbjct: 4   SEFKDYIFGMMFLKRLSDSFDEAREQVFEYYLAKGKTQVEAEALASDEDEYDSTFYIPEV 63

Query: 76  AGYSF-----YNTSEYSLSTLGSTNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           A +S      +N  E   +   +    N NLE  + S   N K    D      ++   K
Sbjct: 64  ARWSALKDLKHNIGEALNTAAEAIEEHNPNLEGVLVSIDFNIKNKLSDNKLRDLLSHFNK 123

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             L     +N S  E  PD     ++   YE+LI+ F     +   +F TP +VV L  A
Sbjct: 124 YRL-----RN-SDFE-RPD-----LLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVA 171

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL        K   GM   +YDPT G+GG L    N++A   +H++    L  +GQE+  
Sbjct: 172 LL--------KPHAGM--RIYDPTAGSGGMLIQMRNYLA---THNENAANLSLYGQEMNL 218

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEK- 307
            T A+C   M +  ++S   R      +   T+   L T   F   ++NPPF   KW K 
Sbjct: 219 NTWAICKMNMFLHGVQSADIRKGDTLREPKHTIDGSLMT---FDRVIANPPFSLSKWGKE 275

Query: 308 --DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             DKD         + GRF  G P    G + F+ H+        N  G   +V+    L
Sbjct: 276 DCDKD---------KYGRFPYGTPPKDSGDLAFVQHMI----ASTNDDGMVGVVMPHGVL 322

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G   S E +IR+ +LE+DL+EA+++LP+ LF+ T I   L I++ +K  ER+GKV  I
Sbjct: 323 FRG---SSEKDIRKGILEDDLLEAVISLPSGLFYGTGIPACLLIINKQKPSERQGKVLFI 379

Query: 426 NATDLWTSIRNEGKKR 441
            A   +   +N+   R
Sbjct: 380 YAELEYHEGKNQNSLR 395


>gi|75907382|ref|YP_321678.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75701107|gb|ABA20783.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 516

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 229/506 (45%), Gaps = 86/506 (16%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M E  G+   SL N+IW  A  + G  +   +   ILP    +RL    +   + + EK 
Sbjct: 1   MGERNGNGDKSLENWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAEKV 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--------- 110
               GS       V +     +N   + L  L   N  + + S I   SD          
Sbjct: 61  ----GSRAKAFKLVAMD----HNLVRFYLP-LQPQNPDDPVWSVIRKLSDKIGEKLTDYL 111

Query: 111 ---AKA------IFEDFDFSSTIA--------RLEKAGLLYKICKNFSGIELHPDTVPDR 153
              AKA      I    DF++T          RL  + L+ KI +   G++   D  PD 
Sbjct: 112 REIAKANPLLNGIINRVDFNATTHGQRDLDDDRL--SNLIEKISEKRLGLK---DVEPD- 165

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   YE+LIR+F     + A +F TP++V  L  A ++ P+       PGM  T+YDP 
Sbjct: 166 IIGRSYEYLIRKFAEGSGQSAGEFYTPKEV-GLIMAKIMQPE-------PGM--TIYDPC 215

Query: 214 CGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+ G L      + +  G+  K  P+ + +GQE  P T A+    M+I         D+
Sbjct: 216 CGSAGLLIKCQLVLQESQGATEKFAPLQL-YGQEYTPNTWAMANMNMIIH--------DM 266

Query: 273 SKNIQQGSTLSKDLF--TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GP 326
              I+ G T     F   GK  +F   ++NP + +KW       EK++   ELGRF  G 
Sbjct: 267 EGKIEIGDTFRHPKFMQAGKLAQFERVVANPMWNQKW-----FTEKDYDGDELGRFPKGA 321

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLE 383
           G P  S     ++ H+   L+      G+AAIVL +     G   +    E E+R+W +E
Sbjct: 322 GYPG-SSADWGWVQHILASLD----KTGKAAIVLDTGAASRGSGNANKNKEKEVRKWFVE 376

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            DLIE ++ LP +LF+ T+    L  L+  K +ER+GK+  INA+ ++     +G  +  
Sbjct: 377 QDLIEGVIYLPQNLFYNTSAPGILLFLNRAKPKERQGKLFFINASLVFA----KGDPKNY 432

Query: 444 INDDQRRQILDIYVS-RENGKFSRML 468
           I D++  +I + +++ RE  KFS ++
Sbjct: 433 IPDEEIERIANTFLTWREEEKFSLIV 458


>gi|270647276|ref|ZP_06222191.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270317229|gb|EFA28814.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 173

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 98/161 (60%), Gaps = 16/161 (9%)

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------------ 329
           LS   F G  F + LSNPP+GK W KD+ A  K+       RF   LP            
Sbjct: 8   LSTISFQGNHFDFMLSNPPYGKNWSKDQ-AYIKDGNEVIDSRFKVTLPDYWGNEETLDAT 66

Query: 330 -KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 67  PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 126

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A
Sbjct: 127 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDA 167


>gi|84385719|ref|ZP_00988750.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
 gi|84379699|gb|EAP96551.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
          Length = 492

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 204/460 (44%), Gaps = 54/460 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGS 65
           + + L  ++ K A  L G    +DF   I P    +R+ +   E  R A+ E      G 
Sbjct: 6   TLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEES-----GG 60

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK----AIFEDFDFS 121
           + +  S  ++  +       +      +TN    +E  +       +     IF D  +S
Sbjct: 61  DEEYASMPEMHRFEIPTGCHWRDVRETTTNVGITIEDALRGIEQANQEYLYGIFGDAQWS 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +     ++  LL  + ++FS   L    V   ++ N YE+LI+ F    ++ A +F TPR
Sbjct: 121 NKNKLSDE--LLINLVEHFSQHTLGNQNVAPDMLGNAYEYLIKHFADLTNKKAGEFYTPR 178

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL   ++LDP +           T+YDP CGTGG L + ++H+ D    ++   +  
Sbjct: 179 SVVHL-LGMILDPHEG---------ETIYDPACGTGGMLLECVDHLKDNKEDYRTLKLF- 227

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297
             GQE    + ++    M +  +E          I +G TL    F      K F   ++
Sbjct: 228 --GQEKNLTSSSIARMNMFLHGIED-------FEILRGDTLRHPAFFEADGLKTFDCVIA 278

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPF  K+W  +  A      N   GR   G+P   +G M ++ H+   +    N  GR 
Sbjct: 279 NPPFSLKEWGAENWA------NDPYGRNIAGVPPKGNGDMAWVQHMVKSM----NSTGRM 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +VL    LF   A   E +IR+ LLE D++EA++ L  ++F+ T +A  + +    K  
Sbjct: 329 TVVLPHGALFRKAA---EGKIRKQLLEQDMLEAVIGLGPNVFYGTQLAACVMVFKQNKPA 385

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +++GKV  I+A+D    IR  G+ +  +  +  +QI D Y
Sbjct: 386 DKKGKVMFIDASD---QIR-VGRAQNFLEPNHVQQIYDWY 421


>gi|189423917|ref|YP_001951094.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420176|gb|ACD94574.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 496

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 201/457 (43%), Gaps = 50/457 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L N +W++A  L G     DF   I P    +R+    +     + E+       + +
Sbjct: 7   SQLENHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIAEEM-----GDPE 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTI 124
           L  F +   +       +        N  N L+  +        D   A+F D  +++  
Sbjct: 62  LAMFPESHRFQVPEGCHWRDIRETPVNVGNALQRALREIEKANPDTLYAVFGDAQWTNK- 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL  A LL  + ++FS + L    V   V+ + YE+LI++F    ++ A +F TPR VV
Sbjct: 121 DRLTDA-LLKDLIEHFSRLPLGNRNVASDVLGDAYEYLIKKFADATNKKAGEFYTPRSVV 179

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L DP +           ++YDP CGTGG L  A+ HV +     K+    +  G
Sbjct: 180 RLMVDML-DPKEG---------DSIYDPACGTGGMLLAALQHVHELHGDTKLLWGKL-FG 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKR---FHYCLSNPP 300
           QE    T A+    + +  +E          I +G TL +   F G R   F   ++NPP
Sbjct: 229 QEKNLTTSAIARMNLFLHGIED-------FQIVRGDTLRNPAFFEGDRLATFDCVIANPP 281

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  +KW       E+   N   GR   GLP  S G   ++ H+   +       GR A+V
Sbjct: 282 FSLEKWG------EEVWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMA---EVTGRMAVV 332

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF  R G  E EIRR LLE DLIE ++ L  +LF+ T +A  + +L  RK  ER+
Sbjct: 333 LPQGALF--RKGV-EGEIRRKLLEMDLIEGVIGLAPNLFYGTGLAACILLLRKRKPAERK 389

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            KV + +A+ L+      G+ +  +  +   +IL  Y
Sbjct: 390 RKVMIADASSLF----RRGRAQNYLEPEHGAEILGWY 422


>gi|147920566|ref|YP_685637.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
 gi|110621033|emb|CAJ36311.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
          Length = 499

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 178/365 (48%), Gaps = 52/365 (14%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDR 153
           +  N LE  +AS   N   + E     +T+++L          ++FS I + + D     
Sbjct: 104 DKNNVLEGLLASIDFNTDKLGEPKQRDATLSQL---------IQHFSKIPMRNSDFAEPD 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+LI +F  +  +   +F TPR VV L   LL +P + +          + DPT
Sbjct: 155 MLGRVYEYLIEKFADDAGKKGGEFYTPRMVVKLIVELL-EPKEGM---------RICDPT 204

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG L ++ ++V   G + K    L   GQE    T  +C   M++          + 
Sbjct: 205 CGSGGMLIESAHYVEQHGGNSKN---LSLFGQEKNIGTWGICKMNMVLHGY-------VD 254

Query: 274 KNIQQGSTLS--KDLFTGKR--FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGL 328
            NI++G T+   K +  G+   F   ++NPPF   KW +     E+  K+G  GRF  G+
Sbjct: 255 VNIEKGDTIRDPKHVKDGQLMLFDRVIANPPFSLDKWGR-----EEAEKDG-FGRFSYGI 308

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  + G   F+ H+   L    N  G+  +V+    LF G A   E +IR  ++++DLIE
Sbjct: 309 PPKTKGDFAFVEHMIATL----NSKGKLGVVVPHGVLFRGAA---EGKIREGIIKDDLIE 361

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           AI+ LPT+LF+ T I   + I++  K  ER+GK+ ++NA D +     EGK +  + D  
Sbjct: 362 AIIGLPTNLFYGTGIPAAILIMNRDKPAERKGKIIIVNAVDEY----QEGKNQNYLRDQD 417

Query: 449 RRQIL 453
             +I+
Sbjct: 418 IEKIV 422


>gi|293374801|ref|ZP_06621105.1| type I restriction-modification system, M subunit [Turicibacter
           sanguinis PC909]
 gi|292646559|gb|EFF64565.1| type I restriction-modification system, M subunit [Turicibacter
           sanguinis PC909]
          Length = 495

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/472 (27%), Positives = 221/472 (46%), Gaps = 60/472 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +W++A  L G    +D+   I     L+R+    E     + +          DLE
Sbjct: 9   LESHLWESANILRGSIDSSDYKNYIFGLLFLKRVNDVFEEICHHLVDD------EGWDLE 62

Query: 71  SFVKVAG-YSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFSSTI 124
              +    Y F+   E   S L S  T      N+    +   + + + +F+  DF+   
Sbjct: 63  DAEEERDEYQFFVPKEARWSYLQSLTTDIGPALNHAFERLEEENGSLEGVFKQIDFNDK- 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            +L    LL ++ ++FS I L  +++  PD ++   YE+LI++F  +  +   +F TP  
Sbjct: 122 EKLPDT-LLIQLIQHFSKINLSNESLEEPD-MLGRAYEYLIKQFADDAGKKGGEFYTPTK 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   L+        K   GM   + DPT G+GG L  +++++   G +   P  L  
Sbjct: 180 VVELLVKLI--------KPEEGM--RICDPTSGSGGMLIQSVDYIKSKGGN---PNNLSL 226

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSN 298
           +GQE    T A+C   +L+  L SD R      I++G T+     T       F   ++N
Sbjct: 227 YGQEKNLNTWAICKMNLLLHGL-SDHR------IEKGDTIRDPKLTENGELMLFDRVIAN 279

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PP+  K W +++ + +      E GRF  GLP  + G   F+ H+   L    N  G+A 
Sbjct: 280 PPYSLKNWGREEASAD------EFGRFRFGLPPANAGDYAFVQHMLATL----NHTGKAG 329

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E +IR+ L++ DLIEAI+ LP +LF+ T I   + + +  K E 
Sbjct: 330 VVLPHGILFRGGA---EGKIRQGLVKEDLIEAIIGLPANLFYGTGIPATIILYNKDKEEA 386

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           R+ K+  I+A+  +     EGK + ++ D+   +I+  + + E   K+SR++
Sbjct: 387 RQNKIFFIDASRDF----QEGKNQNVLRDEDVEKIVSTFDNYEEIEKYSRIV 434


>gi|224369050|ref|YP_002603214.1| HsdM2 [Desulfobacterium autotrophicum HRM2]
 gi|223691767|gb|ACN15050.1| HsdM2 [Desulfobacterium autotrophicum HRM2]
          Length = 515

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 223/487 (45%), Gaps = 59/487 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           SL  ++W +A+ L G    +DF   I     L+R     +     + EK       N D+
Sbjct: 7   SLETWLWGSADILRGSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEK------ENWDI 60

Query: 70  ESFVKVAGYSFY---NTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSST 123
           E+      Y  +   +T+ +      + N    ++  +A+  +   N + +     F + 
Sbjct: 61  EAAASDPDYHKFFIPDTARWQTIIEKTENIGQAIDEALAAIEEENLNLEGVMTAVHFGNK 120

Query: 124 IARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              +    LL ++  +F+   L + D     ++ + YE+LI+ F  +  +   +F TP+ 
Sbjct: 121 --DVLSDALLQRLLNHFNKYSLKNKDLYTPDLLGDAYEYLIKMFADDAGKKGGEFYTPKG 178

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   L+           P    ++YDPTCG+GG L ++  ++A+ G   K+  +L  
Sbjct: 179 VVRLIVQLI----------KPEPKNSVYDPTCGSGGMLVESARYIAEQGG--KVGELLDA 226

Query: 243 H--GQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              GQE    T A+C   M++    ++D ++  + +  + ST   +L     F   ++NP
Sbjct: 227 SLFGQEKNLGTWAICKINMILHNYSDADIKKGCTLSTPKHSTSDGELMI---FDRVIANP 283

Query: 300 PFGK-KWEKDKDAVEKEHKNGE-------------LGRFGPGLPKISDGSMLFLMHLANK 345
           PF + KW    +   K + NG+              GRF  G+P      + FL H+ + 
Sbjct: 284 PFSQNKWWDAAEVDVKVNGNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAFLQHMISV 343

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  G+  IVL    LF  R GS E +IR+ +L++D++EA+V LP+ LF+ T I  
Sbjct: 344 L----NQNGKLGIVLPHGVLF--RGGS-EGKIRKGILKDDILEAVVGLPSKLFYNTGIPA 396

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKF 464
            + I++  K    + KV  I+A+  +     EGK +  + ++  +++++ Y   +E  KF
Sbjct: 397 SILIVNKSKPIHLKNKVIFIDASQDY----KEGKNQNRLEEEHVKKVVEAYDAGQEIDKF 452

Query: 465 SRMLDYR 471
            R++D +
Sbjct: 453 MRIVDMK 459


>gi|262196002|ref|YP_003267211.1| type I restriction-modification system, M subunit [Haliangium
           ochraceum DSM 14365]
 gi|262079349|gb|ACY15318.1| type I restriction-modification system, M subunit [Haliangium
           ochraceum DSM 14365]
          Length = 633

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 188/433 (43%), Gaps = 47/433 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--AFGG 64
           + A L  ++W  A+ L G    +D+   I     L+RL    E     +  + L  A   
Sbjct: 139 TTAQLERYLWAAADILRGQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAVAW 198

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ++ D   F       +   SE +    G     N   + +   +     + E  DF+   
Sbjct: 199 NDPDEHQFFVPERARW---SEIAKVATGIGEALNVACAALEEANSGLDGVLEGIDFNDE- 254

Query: 125 ARL----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            RL     +  +L ++ ++F  + L + D     ++   YE+LI +F  +  +   +F T
Sbjct: 255 RRLGNTKNRDAVLARLVQHFGQLSLKNADLSEPDMLGRAYEYLIEKFADDAGKKGGEFYT 314

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   LL          +P     + DPTCG+GG L +  ++V   G +   P  
Sbjct: 315 PRKVVQLIVELL----------APTAGMRISDPTCGSGGMLIECAHYVERQGGN---PRN 361

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHY--C 295
           L  HGQE    T A+C   ML+  L S         I++G T+   + L  G    Y   
Sbjct: 362 LTLHGQEKNLGTWAICKMNMLLHGLPS-------ARIEKGDTIRDPRLLDNGALLVYDRV 414

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF      D+  VE    +G  GRF  GLP  + G + FL H+   L    N GGR
Sbjct: 415 IANPPFSL----DEWGVEVAEGDGH-GRFRFGLPPKTKGDLAFLQHMVATL----NEGGR 465

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +V+    LF G   S E  IR  LL  DL EA++ L  +LF+ T I   + +LS  K 
Sbjct: 466 LGVVMPHGVLFRG---SSEGRIRSKLLAEDLFEAVIGLAPNLFYGTGIPAAVLVLSRDKA 522

Query: 416 EERRGKVQLINAT 428
             R+GKV  ++A+
Sbjct: 523 RARKGKVLFVDAS 535


>gi|59713718|ref|YP_206493.1| DNA methylase M [Vibrio fischeri ES114]
 gi|59481966|gb|AAW87605.1| DNA methylase M [Vibrio fischeri ES114]
          Length = 493

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 208/461 (45%), Gaps = 56/461 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVRE-----KYL 60
           + + L  ++ K A  L G    +DF   I P    +R+ +   E  R A+ E     +Y 
Sbjct: 6   TLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEESDGDEEY- 64

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               S  ++  F    G  + +  E + +++G T   + L     +  +    IF D  +
Sbjct: 65  ---ASMPEMHRFEIPTGCHWRDVRE-TTTSVGIT-IEDALRGIEQANQEYLYGIFGDAQW 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S+     ++  LL  + ++FS   L    V   ++ N YE+LI+ F    ++ A +F TP
Sbjct: 120 SNKNKLSDE--LLINLVEHFSQYTLGNQNVEPDMLGNAYEYLIKHFADLTNKKAGEFYTP 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL   ++LDP +           T+YDP CGTGG L + ++H+ D    ++   + 
Sbjct: 178 RSVVHL-LGMILDPHEG---------ETIYDPACGTGGMLLECVDHLKDNKEDYRTLKLF 227

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
              GQE    + ++    M +  +E          I +G TL    F      K F   +
Sbjct: 228 ---GQEKNLTSSSIARMNMFLHGIED-------FEILRGDTLRHPAFFEADGLKTFDCVI 277

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF  K W  +  A      N   GR   G+P   +G M ++ H+   L    N  GR
Sbjct: 278 ANPPFSLKDWGSENWA------NDPYGRNIAGVPPKGNGDMAWVQHMVKSL----NSTGR 327

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL    LF   A   E +IR+ LL+ D++EA++ L  ++F+ T +A  + +    K 
Sbjct: 328 MTVVLPHGALFRKAA---EGKIRKQLLDQDMLEAVIGLGPNVFYGTQLAACVMVFKQNKP 384

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            +++GKV  I+A+D    IR  G+ +  +  +  +QI D Y
Sbjct: 385 ADKKGKVMFIDASD---QIR-VGRAQNFLEPNHVQQIYDWY 421


>gi|194333150|ref|YP_002015010.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271]
 gi|194310968|gb|ACF45363.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271]
          Length = 547

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 215/520 (41%), Gaps = 82/520 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAV-- 55
           M    G+  SL ++IW+ A  + G      +   ILP    +RL C +   E  R A   
Sbjct: 1   MVNNNGNRKSLESWIWEAACSIRGAKDAPKYKDYILPLIFTKRL-CDVFDDELNRIAAEV 59

Query: 56  --REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-- 111
             R+K      ++  L  F             +S+    S      + +Y+ + +     
Sbjct: 60  GSRKKAFQLARADHKLVRFYLPLIPDDPEQPVWSVIRKLSDRIGEGVTTYMRAIARENPL 119

Query: 112 -KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + I +  DF++T    R      L  + +  S   L  D V   ++   YE+LIR+F  
Sbjct: 120 LQGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLDDVEADIIGKSYEYLIRKFAE 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA----- 223
              + A +F TP +V  + +  L           P     +YDPTCG+GG L        
Sbjct: 180 GGGQSAGEFYTPPEVGTIMSRAL----------QPEQGMEIYDPTCGSGGLLVKCEIAME 229

Query: 224 -------------------MNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLI 261
                              +N    C    + PP   P    GQE  PET A+    M+I
Sbjct: 230 EQRREIKEGGHSCPPLHSELNGYPLCNGGLENPPSFAPLKLFGQEYIPETWAMANMNMII 289

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEH 316
                    D+   I+ G T     F  K+     F   ++NP + + W       E ++
Sbjct: 290 H--------DMEGQIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEADY 336

Query: 317 KNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG- 373
            N EL RF  G G P  S     ++ H+   L    N  GRAAIVL +  +  G   +G 
Sbjct: 337 DNDELDRFPAGAGFPGKSSADWGWVQHMHASL----NDTGRAAIVLDTGAVSRGSGNAGT 392

Query: 374 --ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E  +R+W ++ND+IE+++ LP +LF+ T     +  L+  K E+R+ KV L+NA    
Sbjct: 393 NKEKNVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNKAKPEDRKSKVFLVNA---- 448

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470
           + I  +G  +  I D+  ++I+D  +  +E  K SR++D+
Sbjct: 449 SRIFEKGDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVDH 488


>gi|239994326|ref|ZP_04714850.1| hypothetical protein AmacA2_07556 [Alteromonas macleodii ATCC
           27126]
          Length = 457

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 105/167 (62%), Gaps = 30/167 (17%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           + GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIV+LPTD+F+ T IATY+W+L
Sbjct: 17  SNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVSLPTDMFYNTGIATYVWVL 76

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQI------LDIYVSRE--- 460
           +N+K +ER+GKVQLI+ ++L+  +R   G KR  ++DD  + I       ++  +RE   
Sbjct: 77  TNKKKDERKGKVQLIDGSNLYGKMRKSLGSKRNQMSDDDIKTITRAFGDFEVIDAREIDK 136

Query: 461 -------------NGK-------FSRMLDYRTFGYRRIKVLRPLRMS 487
                        N K        S++ +   FGYRRI + RPLR+S
Sbjct: 137 PTEQKSNRGRQSANAKQEAPKTFASKIFNTYEFGYRRITIERPLRLS 183



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 69/108 (63%), Gaps = 9/108 (8%)

Query: 573 PVTDVNGEWIP---DTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDE 623
           PV+   G+ +    D +L + ENVP   S      I+ YF++EV+PHV DA+I+    DE
Sbjct: 348 PVSKWKGKVVSFKQDGDLRDNENVPLNPSKITSDLIESYFLKEVAPHVSDAWINADKRDE 407

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           KD EIG VGYEI FNR FY YQP R L++ID +L  V A+I  LL+E+
Sbjct: 408 KDGEIGIVGYEIPFNRHFYVYQPPRDLREIDKDLDAVSAEILQLLQEV 455


>gi|110799934|ref|YP_696989.1| type I restriction-modification system, M subunit [Clostridium
           perfringens ATCC 13124]
 gi|110674581|gb|ABG83568.1| type I restriction-modification system, M subunit [Clostridium
           perfringens ATCC 13124]
          Length = 505

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 166/340 (48%), Gaps = 42/340 (12%)

Query: 140 FSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           FS + L + +   + ++ + Y++LI++F  +  +   +F TP +VV + T +L       
Sbjct: 145 FSTVNLANSNLASEDMLGDAYQYLIKQFADQGGKKGGEFYTPTEVVKVITNIL------- 197

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
               P     +YDPTCG+GG L  ++ +V   G +   P  L   GQE+   T A+C   
Sbjct: 198 ---KPQEGDRIYDPTCGSGGMLIQSIEYVKKHGGN---PKNLSLFGQEINLSTWAICKMN 251

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVE 313
           ML    +         +IQ+G T+ +   T     K F   L+NPPF  K W  ++ + +
Sbjct: 252 MLFHGAKG-------ADIQKGDTIREPKHTEGGALKVFDKVLANPPFSLKNWGAEEASYD 304

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
             H      RF  G+P  S G + F+ H+   L    N  G+ A V+    LF G   S 
Sbjct: 305 AFH------RFTYGIPPKSYGDLAFVEHMLGSL----NMKGKMASVVPHGVLFRG---SA 351

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IR+  +E+DLIEA++ LP +LF+ T I   + +L+  K+EER+ K+  I+ ++ +  
Sbjct: 352 EGKIRKGFIEDDLIEAVIGLPQNLFYGTGIPAAILVLNKAKSEERKNKILFIDGSNDFVK 411

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +G K ++  +D  + I       +  K++ ++D  T 
Sbjct: 412 ---QGNKNKLREEDIEKIITAFDKFEDVEKYANVIDLETI 448


>gi|260905939|ref|ZP_05914261.1| type I restriction-modification system, M subunit [Brevibacterium
           linens BL2]
          Length = 506

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 156/330 (47%), Gaps = 39/330 (11%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +F D ++++     E A  L  +   F  + L PD V   ++   YE+L+R F     +
Sbjct: 118 GVFGDINWANKDRLPENA--LTDLLDAFHSVRLDPDHVEGDMLGAAYEYLLREFAEASGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TPR VVHL   +L           P    ++ DP CG+ G L + +N V + G 
Sbjct: 176 KAGEFFTPRHVVHLLVKIL----------QPQSGDSIIDPACGSAGMLVETVNEVKNSGG 225

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GK 290
               P  L  HGQE+   T A+    + +  LE     D S  I++G T S+  F   GK
Sbjct: 226 D---PRTLSLHGQEVNLTTSAIAKMNLYLHGLE-----DFS--IKRGDTFSEPRFVTNGK 275

Query: 291 --RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              F+  ++NPPF  + W            N    R   G+P   +G   ++ H+ + ++
Sbjct: 276 LDAFNVVIANPPFSLQNWGA------SSWSNDSYNRAFCGVPPAKNGDFAWIQHMISSMK 329

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +V+    LF G     E  IR+ LLE DL+EA+++LP +LF+ T+I   L
Sbjct: 330 ---EDTGRVGVVMPHGVLFRG---GKEGAIRQCLLEKDLLEAVISLPKNLFYSTSIPVCL 383

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNE 437
            I   +K+ ERR +V  ++A+  +++  N+
Sbjct: 384 LIFRAKKSAERRSRVLFVDASSRFSAGTNQ 413


>gi|237653815|ref|YP_002890129.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625062|gb|ACR01752.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 498

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 208/468 (44%), Gaps = 56/468 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREK 58
           M + + + A L + +W++A  L G     DF   I P    +R+ C +  E  +  V E 
Sbjct: 1   MHQPSITLAQLESHLWESANILRGPVDAADFKTYIFPLLFFKRI-CDVWDEEYQEIVDET 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAI 114
                  +  L  F +   +       ++     + N    L+  +        D    +
Sbjct: 60  ------GDEQLAWFPESHRFQIPEDCHWNDVRAKAANVGAALQHAMREIEKANPDTLYGV 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   RL  A LL  + ++FS + L    V   ++ + YE+LI++F    ++ A
Sbjct: 114 FGDAQWSNK-ERLSDA-LLKDLIEHFSKLPLGNGNVTSDLLGDAYEYLIKKFADATNKKA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TPR VV L   +L DP +           T+YDP CGTGG L  A+ HV +  G  
Sbjct: 172 GEFYTPRSVVRLMIDML-DPREG---------ETIYDPACGTGGMLLAAVQHVQEMHGDV 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKR- 291
            ++   L  +GQE    T ++    + +  +E          I +G TL +   F G R 
Sbjct: 222 KRLWGKL--YGQEKNLTTSSIARMNLFLHGIED-------FKIVRGDTLRNPAFFDGDRL 272

Query: 292 --FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             F   ++NPPF  +KW +D         N   GR   GLP  S G   ++ H+   +  
Sbjct: 273 SAFDCVIANPPFSLEKWGEDL------WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM-- 324

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +G GR A+VL    LF     S E  IR+ LL+ DLIEA++ L  +LF+ T +A  + 
Sbjct: 325 -ADGTGRMAVVLPQGALFRK---SAEGGIRQKLLKLDLIEAVIGLAPNLFYGTGLAACIL 380

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +L  +K   RR KV + +A+ L+      G+ +  +  +   QIL  Y
Sbjct: 381 VLRKKKPAARRRKVLVADASRLF----RRGRAQNYLEAEHAAQILGWY 424


>gi|241895464|ref|ZP_04782760.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Weissella paramesenteroides ATCC 33313]
 gi|241871438|gb|EER75189.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Weissella paramesenteroides ATCC 33313]
          Length = 517

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 174/356 (48%), Gaps = 51/356 (14%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F+D D +ST  RL     E++ L+ K+  N + +++  D V   V+ + YE+LI +F
Sbjct: 136 RGLFDDLDLNST--RLGNTVAERSALMQKVLLNLADLDMGHDEVQIDVLGDAYEYLIGQF 193

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  L   ++    D L        + +YDPT G+G  L   +  
Sbjct: 194 AANAGKKAGEFYTPQQVSKLLAQIVTKGHDTL--------QNVYDPTMGSGSLLL-RIGD 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            A  G++         +GQEL   T+ +    +L+  +  +       ++QQG TL  D 
Sbjct: 245 YATVGNY---------YGQELNRTTYNLGRMNLLMHGVSYNQF-----SVQQGDTLENDY 290

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G++F   ++NPP+  KW  D    ++  +     ++G   PK S     F+ H+   L
Sbjct: 291 FEGQQFDAVVANPPYSAKWNTDGKLDDERFR-----KYGKTAPK-SKADFAFVEHMLAHL 344

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIAT 405
               N  G  A+VL    LF G A   E  IRR+++E D +++A++ LP +LFF T+I T
Sbjct: 345 ----NVTGTMAVVLPHGVLFRGAA---EGTIRRYMIEQDNVLDAVIGLPANLFFGTSIPT 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            + +    ++ +    V  I+A+  +     +GK +  + D Q  +I+D Y  RE+
Sbjct: 398 TVLVFKKNRSNQ---DVFFIDASADF----EKGKNQNNLTDTQLARIVDTYDKRED 446


>gi|330721465|gb|EGG99515.1| Type I restriction-modification system2C DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC2047]
          Length = 550

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 39/297 (13%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           PD ++   YE+LI+ F     +   +F TP +VV L  +LL        K   GM   +Y
Sbjct: 134 PD-LLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVSLL--------KPHAGM--RIY 182

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPT G+GG L    N++A   SH + P  L   GQE+   T A+C   M +  +      
Sbjct: 183 DPTVGSGGMLVQTRNYLA---SHGENPSNLSLFGQEMNLNTWAICKMNMFLHGV------ 233

Query: 271 DLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
             S +I++G TL +   T       F   ++NPPF  KKW K+      E      GRF 
Sbjct: 234 -YSADIRKGDTLREPQHTQGGGLMSFDRVIANPPFSLKKWGKE------EADADNYGRFP 286

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P    G + F+ H+   L    N  G   +V+    LF G   + E  IR+ +L +D
Sbjct: 287 YGTPPKDAGDLAFVQHMIASL----NAEGMMGVVMPHGELFRG---ASEKTIRQGILNDD 339

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           L+EA++ LP+ LF+ T I   L I++  K  +R+GKV  IN+   +   +N+ K R+
Sbjct: 340 LLEAVIGLPSALFYGTGIPACLLIINKDKPADRKGKVLFINSELEYQEGKNQNKLRQ 396


>gi|198283096|ref|YP_002219417.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666139|ref|YP_002425314.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247617|gb|ACH83210.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518352|gb|ACK78938.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 520

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 214/495 (43%), Gaps = 59/495 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAV-- 55
           M    G   SL ++IW  A  + G      +   ILP    +RL C +   E  R A   
Sbjct: 1   MANNNGKDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFTKRL-CDVFDDELNRIAAEV 59

Query: 56  --REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--- 110
             R+K      ++  L  F             +S+    S      + S++ + +     
Sbjct: 60  GSRKKAFQLAKADHKLVRFYLPLVPDDPEQPVWSVIRKLSDWIGEGVTSHMRAIARENPL 119

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + I +  DF++T    R      L  + +  S   L  + V   ++   YE+LIR+F  
Sbjct: 120 LQGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFAE 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD---AMN 225
              + A +F TP +V  + + +L        +  PGM   +YDPTCG+GG L     AM 
Sbjct: 180 GGGQSAGEFYTPPEVGTIMSRVL--------QPEPGM--EIYDPTCGSGGLLVKCEIAME 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             A  G    + P+ +  GQE  PET A+    M+I         D+   I+ G T    
Sbjct: 230 ETAK-GKKRTVAPLKL-FGQEFTPETWAMANMNMIIH--------DMEGQIEIGDTFKNP 279

Query: 286 LFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFL 339
            F  K     F   ++NP + + W       E ++ N EL RF  G G P  S     ++
Sbjct: 280 KFRSKGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKSSADWGWV 334

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTD 396
            H+   +    N  GRAA+VL +     G   +G   E  +R+W +++DLIE+++ LP +
Sbjct: 335 QHIHASM----NATGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPEN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T     +  L+  K  ER+GKV L+NA+ ++     +G  +  I +   ++I D  
Sbjct: 391 LFYNTTAPGIVLFLNKAKAHERKGKVFLVNASQVF----EKGDPKNFIPEAGIQRIADTL 446

Query: 457 VS-RENGKFSRMLDY 470
           +   E  K SR++D+
Sbjct: 447 IGWVEAEKLSRIVDH 461


>gi|77920517|ref|YP_358332.1| type I restriction-modification system, M subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77546600|gb|ABA90162.1| type I restriction-modification system, M subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 504

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 193/441 (43%), Gaps = 47/441 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +SL+  +W+ A  L G     DF   I P    +RL    +   +A  E+       +++
Sbjct: 14  SSLSGHLWQAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYAAALEE----SDGDVE 69

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTI 124
              F +   +       +  +   S N  + L+  +        D    IF D  +++  
Sbjct: 70  FAQFPENHRFQVPENCHWKDARAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK- 128

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL  A LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TPR VV
Sbjct: 129 ERLSDA-LLKDLLEHFSSLNLGNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSVV 187

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVPH 243
            L   +L          +P    T+YDP CGTGG L +A++HV +  G  H +   L  +
Sbjct: 188 ALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEHGGDEHLMLGKL--Y 235

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE    T ++    + +   E         +I++G TL    F        F   ++NP
Sbjct: 236 GQEKNLTTSSIARMNLFLHGAED-------FHIERGDTLRLPAFYSGDSLATFDCVIANP 288

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF  KKW  D         N   GR   GLP    G   ++ H+   +       GR A+
Sbjct: 289 PFSLKKWGDDA------WTNDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARKTGRMAV 339

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF     S E +IR  LLE D++EA++ L  ++F+ T +A  + +  + K ++ 
Sbjct: 340 VLPHGVLFRM---SKEGKIRHKLLEMDILEAVIGLGKNIFYGTGLAPCVLVFRDSKPKDH 396

Query: 419 RGKVQLINATDLWTSIRNEGK 439
           R KV  I+A+  + + R + +
Sbjct: 397 RQKVLFIDASKEFKTGRAQNE 417


>gi|227523728|ref|ZP_03953777.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227089043|gb|EEI24355.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus hilgardii ATCC 8290]
          Length = 532

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 184/370 (49%), Gaps = 52/370 (14%)

Query: 109 DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           D+ K +FED D +S     T+A  E++ L+ K+  N + I+ H + +   V+ + YE+LI
Sbjct: 133 DDFKGLFEDMDLASSRLGSTVA--ERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLI 190

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP+ V  + + L+      L +E    +RT+YDPT G+G  L   
Sbjct: 191 GQFAATAGKKAGEFYTPQQVSKVLSQLV-----TLNREE---VRTVYDPTMGSGSLLL-- 240

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  G + K+      +GQEL   T+ +    ML+  +    R DL    +QG TL 
Sbjct: 241 -----RVGDYAKVAEY---YGQELNGTTYNLARMNMLMHGINY-SRFDL----RQGDTLE 287

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D F  + F   ++NPP+   W    D ++ E       ++G   PK S     F+ H+ 
Sbjct: 288 NDQFPERTFDAVVANPPYSANWNA-TDKLDDER----FRKYGKTAPK-SKADFAFVEHML 341

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTN 402
             L+      GR A+VL    LF G A   E +IR++++E D +++A++ +P +LF+ T+
Sbjct: 342 YHLKT----DGRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTS 394

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + +    +       +  I+A+  +     +GK +  + D+  ++I+D Y  R++ 
Sbjct: 395 IPTVVLVFDKSRINH---DILFIDASKDF----EKGKNQNNLTDENVKKIIDTYKDRKDV 447

Query: 462 GKFSRMLDYR 471
            KF+ + D++
Sbjct: 448 KKFAHVADFK 457


>gi|149920793|ref|ZP_01909256.1| type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
 gi|149818311|gb|EDM77763.1| type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
          Length = 591

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 192/439 (43%), Gaps = 48/439 (10%)

Query: 9   ASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           + L + +W+ A  L G     TD+   ILP    +R+  A +  R    +   A+ G   
Sbjct: 102 SKLESHLWEAANILRGSPVDRTDWKSYILPLLFFKRICDAWDEERE---DMLKAYDGQVF 158

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             E    V     +     +   +G    R+ +     +  D    +F D  +++   RL
Sbjct: 159 PDEFRFDVPDGCHWRVVRGATKHVGKA-IRDAMRGIEQANQDKLLGVFGDASWTNK-ERL 216

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
               LL  + ++FS + L    V + V+ + YE+LI++F    ++ A +F TPR VV L 
Sbjct: 217 PD-DLLKDLIEHFSKLSLGNKAVKNDVIGDAYEYLIKKFADSTNKKAGEFYTPRSVVRLM 275

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--GQ 245
              L DP +           T+YDP CGTGG L  A+ HV D G     P        GQ
Sbjct: 276 VDTL-DPQEG---------ETIYDPACGTGGMLLAAVEHVKDAGGD---PRTFFGKLFGQ 322

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYCLSNP 299
           E    T +V    + +  +E         +I++G TL +  F        ++F   L+NP
Sbjct: 323 EKNLTTASVARMNLQLHGVEE-------FDIRRGDTLRRPAFASAEDHSLRQFDIVLANP 375

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF  K W +D        ++   GR   GLP    G   ++ H+   +     G GR A+
Sbjct: 376 PFSLKNWGRDV------WESDPWGRAFAGLPTDKSGDFAWVQHMVKSMA---PGHGRMAV 426

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF G A   E +IR+ LLE D IE ++ L  +LF+ T +A  + +L   K   R
Sbjct: 427 VLPQGALFRGGA---EGKIRKKLLELDRIEVVIGLAPNLFYGTGLAACILVLRMTKPAAR 483

Query: 419 RGKVQLINATDLWTSIRNE 437
           + KV +++ + L+   R +
Sbjct: 484 KKKVLVVDGSSLFRKGRAQ 502


>gi|312879435|ref|ZP_07739235.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310782726|gb|EFQ23124.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 506

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 188/433 (43%), Gaps = 53/433 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L  ++W  A  L G     DF   I P    +RL    +       E  +A   S+ D
Sbjct: 16  GTLFGYLWDAANILRGSVDAADFKTYIFPLLFFKRLSDVYD------EEYAVALDESDGD 69

Query: 69  LESFVKVAGYSFYNTSE--------YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +E F + A    +   E         +++ +G    +  +     +  D    IF D  +
Sbjct: 70  VE-FAQFAENHRFQVPEDCHWKDVRATIAHIGHA-LQKAMRCIEQANPDTLHGIFGDAQW 127

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TP
Sbjct: 128 TNK-DRLSDV-LLKDLIEHFSSLNLSNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTP 185

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L   +L          +P    T+YDP CGTGG L +A++HV + G    +  + 
Sbjct: 186 RSVVALLVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEQGGDENLM-LG 234

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE    T A+    + +   E         ++Q+G TL    F        F   +
Sbjct: 235 KLYGQEKNLTTSAIARMNLFLHGAED-------FHVQRGDTLRVPAFYSGDNLATFDCVI 287

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF  KKW  D         N   GR   GLP    G   ++ H+   +       GR
Sbjct: 288 ANPPFSLKKWGDDV------WINDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARRTGR 338

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+V+    LF     S E EIRR LLE D++EA++ L  ++F+ T +A  + +  +RK 
Sbjct: 339 MAVVVPQGVLFRM---SKEGEIRRKLLEMDILEAVIGLGQNIFYGTGLAPCVLVFRDRKP 395

Query: 416 EERRGKVQLINAT 428
           E  R KV  I+A+
Sbjct: 396 EAHRWKVLFIDAS 408


>gi|297572114|ref|YP_003697888.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932461|gb|ADH93269.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 231

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 5/215 (2%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T    S    IW  AE L GD+K  ++G V+LPFT+L RL+  L  T+ AV +  +    
Sbjct: 3   TDRLTSHVALIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKVTSVP 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +    + K  GY  +NTS ++L TL     N   NL  Y+ +F+  A+ + E ++F +
Sbjct: 63  LQVKELQYAKATGYPLWNTSNFTLKTLLDDPDNLEQNLTYYVQAFAPAAREVMEAYNFYN 122

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              RL+KAGLLY++   F  S + LHPD V +  M  I+E LIRRF    +E A +  TP
Sbjct: 123 VFERLDKAGLLYQVLSEFTSSKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTP 182

Query: 181 RDVVHLATALLLDPDDALFKE-SPGMIRTLYDPTC 214
           R+V+ L   LL +P++ + +  + G + +LY+ + 
Sbjct: 183 REVISLMVNLLFNPEEDINRLCADGAMASLYETSS 217


>gi|227508544|ref|ZP_03938593.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191876|gb|EEI71943.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 532

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 183/369 (49%), Gaps = 52/369 (14%)

Query: 109 DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           D+ K +FED D +S     T+A  E++ L+ K+  N + I+ H + +   V+ + YE+LI
Sbjct: 133 DDFKGLFEDMDLASSRLGSTVA--ERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLI 190

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP+ V  + + L+      L +E    +RT+YDPT G+G  L   
Sbjct: 191 GQFAATAGKKAGEFYTPQQVSKVLSQLV-----TLNREE---VRTVYDPTMGSGSLLL-- 240

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  G + K+      +GQEL   T+ +    ML+  +    R DL    +QG TL 
Sbjct: 241 -----RVGDYAKVAEY---YGQELNGTTYNLARMNMLMHGINY-SRFDL----RQGDTLE 287

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D F  + F   ++NPP+   W    D ++ E       ++G   PK S     F+ H+ 
Sbjct: 288 NDQFPERTFDAVVANPPYSANWNA-TDKLDDER----FRKYGKTAPK-SKADFAFVEHML 341

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTN 402
             L+      GR A+VL    LF G A   E +IR++++E D +++A++ +P +LF+ T+
Sbjct: 342 YHLKT----DGRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTS 394

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + +    +       +  I+A+  +     +GK +  + D+  ++I+D Y  R++ 
Sbjct: 395 IPTVVLVFDKSRINH---DILFIDASKDF----EKGKNQNNLTDENVKKIIDTYKDRKDV 447

Query: 462 GKFSRMLDY 470
            KF+ + D+
Sbjct: 448 KKFAHVADF 456


>gi|220931289|ref|YP_002508197.1| type I restriction-modification system, M subunit [Halothermothrix
           orenii H 168]
 gi|219992599|gb|ACL69202.1| type I restriction-modification system, M subunit [Halothermothrix
           orenii H 168]
          Length = 495

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 224/481 (46%), Gaps = 58/481 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL------ECALEPTRSA 54
           M++ T +   L + +W++A  L G    +D+   I     L+R+      EC  E  ++ 
Sbjct: 1   MSQETLTLDKLESHLWESANILRGSIDSSDYKNYIFGMLFLKRISDVFDEEC--EKMKAE 58

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
            +E ++     + D   F       + + S+ +   +GS    N     +   +   + +
Sbjct: 59  GKEAFI----DDPDFHDFFVPKRARWEHISKVT-QDIGSH--INKAFEVLEEHNKMLEGV 111

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEG 173
               DF+    RL    +L ++ ++FS   L    + D  ++   YE+LIR+F  +  + 
Sbjct: 112 LAPIDFNDK-ERLPDH-VLEELIQHFSKYSLKNRDLEDPDILGRAYEYLIRQFADDAGKK 169

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV L   +L DP        PGM  ++YDP CG+GG L  +  H+ + G+ 
Sbjct: 170 GGEFYTPRQVVKLLVEIL-DP-------RPGM--SVYDPCCGSGGMLIYSAEHLIEEGN- 218

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGK- 290
             I  I + +GQE    T A+C   ML+  L           I +G T+    F   GK 
Sbjct: 219 -DISEISL-YGQERNLNTWAICKMNMLLHGL-------YDAKIAKGDTMRDPQFLDNGKL 269

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   ++NP + +     K   E E      GRF  G P  +    +++ H+       
Sbjct: 270 DQFDRVIANPMWNQSSWSKKYLQETE----PFGRFSYGFPPKNSADWVWIQHML----AS 321

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  G+  +VL +  LF GR+   E +IR+ +L++DLIEA++ALP++LF+ T+    + I
Sbjct: 322 ANKKGKIGVVLDNGVLFRGRS---EGKIRKKVLKHDLIEAVIALPSNLFYNTSSPGCILI 378

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           L+  KT ER+ KV  I A + +     EG  +  + +    +IL+ Y + E+  ++ R++
Sbjct: 379 LNKDKTVERKNKVIFIYAEEDYK----EGSNQNYLREKDIEKILNAYKNFEDIERYCRVV 434

Query: 469 D 469
           D
Sbjct: 435 D 435


>gi|254172724|ref|ZP_04879399.1| type I restriction-modification enzyme, M subunit [Thermococcus sp.
           AM4]
 gi|214033653|gb|EEB74480.1| type I restriction-modification enzyme, M subunit [Thermococcus sp.
           AM4]
          Length = 523

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 184/373 (49%), Gaps = 40/373 (10%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  + N + + + FDF   +   + A +L ++ + FSG+ L  +  PD V+ + YE ++
Sbjct: 121 LAELNPNLRGVVDRFDFMEFMLHRDNAEILRQLFELFSGLNLK-NASPD-VLGDAYEWIL 178

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F  + ++  E + TPR+V+ L   +L        K  PG    +YDP  G+GG L  A
Sbjct: 179 RYFAPQKAKEGEVY-TPREVIRLLVEIL--------KPKPG--EEVYDPAMGSGGMLIGA 227

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             +V +     +   + + +GQE+ P T+A+    M++  ++S P+      +  G TL 
Sbjct: 228 YLYVKEKHGESEAKKLFL-YGQEVNPTTYALAEMNMILHGIKS-PK------LAVGDTLL 279

Query: 284 KDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--RFGPGLPKISDGSML 337
           +  F      KRF+  ++NPP    W +D    E   K  E    RF  G P  +     
Sbjct: 280 RPAFKEGNKLKRFNVVIANPP----WNQDGYG-EATLKKAEFKEERFKYGYPPNNSADWA 334

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+   L    +  GR  IV+ +  LF G A   E +IR  +L++DL+EA++ LP  L
Sbjct: 335 WIQHM---LASARDEDGRVGIVIDNGALFRGGA---EKKIRAKVLKDDLVEAVILLPEKL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T     + I +  K  ERRGKV  INA+  +     E +K   + D   R+I+D + 
Sbjct: 389 FYNTGAPGAIMIFNRNKPTERRGKVLFINASQEYEK-HPEVRKLNRLGDGHIRKIVDAFE 447

Query: 458 SRENGK-FSRMLD 469
             E+ + F+R+++
Sbjct: 448 KFEDVEGFARVVE 460


>gi|291534512|emb|CBL07624.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis M50/1]
          Length = 805

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 211/470 (44%), Gaps = 58/470 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T+   ++  L N +++    L G     +F   + P    +R+    +       E+ L
Sbjct: 308 LTKEETTSRQLFNHLFEACNILRGPINQDEFKSYVTPVLFFKRISDVYDEEY----EEAL 363

Query: 61  AFGGSNI------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
            F G ++      D+ SFV   G   +N        +G    +  +     +  D    +
Sbjct: 364 EFSGGDVEYAEAEDMHSFVIPDG-CHWNDVRMVSQDVGKAIVKA-MTGIEKANPDTLSGV 421

Query: 115 FEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           F  FD ++   + +     L  + ++ S I++        +M + YE LI++F     + 
Sbjct: 422 FSSFDDATWTDKNKLTDERLKNLIEHMSLIKVGNKNYSADIMGDSYEFLIKKFADMSKKN 481

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGS 232
           A +F TPR +V L   LL DP        PG   T+YDP CGTGG L +A++H+  D  +
Sbjct: 482 AGEFYTPRTIVKLMVNLL-DP-------KPG--ETVYDPACGTGGMLIEAIHHMNNDRLA 531

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
           + +I       GQE    T A+    + +        +D+   ++QG TL   LF  K  
Sbjct: 532 YGRI------FGQENNLSTSAIARMNLYLH-----GAKDVQ--VKQGDTLRNPLFLEKGK 578

Query: 291 --RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              F   L+NPPFG KKW         + ++ + GR   G P  S     +L H+   ++
Sbjct: 579 LKTFDCVLANPPFGMKKWGAG------QFESDQYGRNMWGCPSDSSADFAWLQHMIKSMD 632

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +  GR A+VL    LF+      E EIR  L+ +D +EA++ L + +F+ T ++  +
Sbjct: 633 ---SKNGRCAVVLPQGVLFHS---GKEGEIREQLVRSDKLEAVITLASGVFYSTGVSACI 686

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             L+N+K  + +G++ LI+ T+++T  R     + II+ D  + +  +Y 
Sbjct: 687 LFLNNKKEHKHKGRICLIDGTEIYTPQR----AQNIISPDNVKTLYKLYT 732


>gi|119510903|ref|ZP_01630026.1| type I restriction-modification system, M subunit, putative
           [Nodularia spumigena CCY9414]
 gi|119464431|gb|EAW45345.1| type I restriction-modification system, M subunit, putative
           [Nodularia spumigena CCY9414]
          Length = 471

 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 130/239 (54%), Gaps = 15/239 (6%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REK 58
           T    S   L  FIW  A+ L G ++   + +V+LP  +L RL+  LEPT+  V   + K
Sbjct: 4   TNTENSHQDLIGFIWTIADKLRGPYRPPQYRRVMLPLIVLGRLDAVLEPTKQDVLDAKAK 63

Query: 59  YLAFGGSNIDLE-SFVKVAGYS-----FYNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110
           Y A G      E +  KVA  S      YNTS+++   L   +    +NL +YI  FS  
Sbjct: 64  YEAMGLQGEAFEKAIAKVAIGSDRQQFLYNTSKFTFQELLNDADGIASNLINYINGFSPR 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGS 168
           A+ IFE F+F S I +L+++  LY I K+F    ++L P  + +  M  ++E L+R+F  
Sbjct: 124 ARDIFEKFNFESEIQKLDESNRLYLIIKDFCKPEVDLSPAQLSNLQMGYLFEELVRKFNE 183

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           + +E A D  TPR+V+ L   L+   +  +F++  G+ R++YDPT GTGG L+ +  H+
Sbjct: 184 QANEEAGDHFTPREVIRLMVNLVFCEETDVFQQ--GIYRSVYDPTLGTGGMLSVSEEHI 240


>gi|85716963|ref|ZP_01047927.1| type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
 gi|85696242|gb|EAQ34136.1| type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
          Length = 500

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 199/458 (43%), Gaps = 51/458 (11%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L + +W  A  L G     TD+   ILP    +R+    +   +  RE Y      + D 
Sbjct: 8   LRSALWDAANTLRGSAVDRTDWKGYILPLLFFKRISDVWDEETTEARELY-----GDADP 62

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFSSTIARLE 128
             F ++  ++      ++     + N    L+  +      N   +F  F  +    R +
Sbjct: 63  SLFPEIHRFALPEGCHWNDVREVAANVGAALQRAMQEIERANPDTLFRVFGTADWGNREK 122

Query: 129 KAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
            +  LL  + + FS I+L    V   V+ + YE+L+ +F        A +F TPR +V +
Sbjct: 123 FSDELLKDLIEGFSEIQLGNKAVSTDVLGDAYEYLVGKFADVTRRNKAGEFYTPRSIVRM 182

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPILV 241
              +L DP +           ++YDP CGTGG L  A+ HV   G      + KI     
Sbjct: 183 MVDIL-DPQEG---------ESIYDPACGTGGMLLGAIEHVVRNGGDPRTFYGKI----- 227

Query: 242 PHGQELEPETHAVCVAGMLIRRLE--SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
            +GQE    T A+    +++  +E     R D  +N     + +  L T   F   ++NP
Sbjct: 228 -YGQEKNLTTAAIARMNLVLHGIEDFQVAREDTLRNPAFTDSSTSGLAT---FDCVIANP 283

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF  K+W +D        +    GR   G+P  S G   F+ H+   +   P G  R A+
Sbjct: 284 PFSLKEWGRDL------WEADPWGRAQYGIPPESYGDYAFVQHMIASM--VPIGNSRMAV 335

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF     S E  IRR LLE D++EA++ L  +LF+ T +A  + +L  RK E  
Sbjct: 336 VLPQGALFRK---SAEGTIRRALLEQDMVEAVIGLAPNLFYGTQLAGCVMVLRRRKPENH 392

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + KV +I+A+ L+     +G+ +  ++     QI+  Y
Sbjct: 393 QNKVLIIDASSLF----RKGRAQNFLDQGHSDQIVAWY 426


>gi|322369760|ref|ZP_08044323.1| type I restriction-modification system, M subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320550678|gb|EFW92329.1| type I restriction-modification system, M subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 520

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 215/482 (44%), Gaps = 61/482 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A+L + +W+ A+ L G     D+   I     L+R+    E     + E+Y    G + D
Sbjct: 20  ATLESHLWEAADILRGSIDAADYKNYIFGLLFLKRINDRFEEETEEIAEEY----GIDED 75

Query: 69  LESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE----DFDFSS 122
             +  +     F+    + +       T+    L   +A+  D   AI +      DF+ 
Sbjct: 76  TVAHDRDLHEEFWVPERAHWDHIAAQDTDIGATLNKALAAVEDENDAIADRVLTSVDFND 135

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              RL  A  L ++  +F+      + + D  +    YE+LIR+F  +  +   +F TPR
Sbjct: 136 K-DRLSDA-TLDELVTHFTKHRYRNEDLEDPDIFGRAYEYLIRQFADDAGKKGGEFYTPR 193

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +VV L    + DP++            +YDP CG+GG L  +  HV   G       +  
Sbjct: 194 EVVQLLVDCV-DPEEG---------DRVYDPACGSGGMLIYSAQHVEQEGGDRDDISL-- 241

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCL 296
            +GQE    T A+    +L+  L+          I +G T+++  F  +      F   +
Sbjct: 242 -YGQEKNLNTWAIGQMNVLLHELQD-------AKIAKGDTITEPKFVTEHDELEVFDRVV 293

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPP+  KKW K     E   +N    RFG GLP  + G   ++  +   L    +  G+
Sbjct: 294 ANPPWNQKKWSK-----EWVQENEPYNRFGYGLPPKNRGDWSWIQLMLASL----SETGK 344

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A IV+ +  LF  R+   E +IR+ +LE DLIEA++ALP +LF+ T     + I++  K 
Sbjct: 345 AGIVMDNGVLFRSRS---EKKIRKPILEADLIEAVIALPENLFYNTGSPGCILIMNKDKP 401

Query: 416 EERRGKVQLINATDLWTSIRNEGKK--RRIINDDQRRQILDIYVS------RENGKFSRM 467
           EER+GKVQ I A D   ++R  G +    + N +Q  Q    Y++      RE    SR+
Sbjct: 402 EERKGKVQFIYAED--QTLRESGVQVFEELSNQNQLTQEGVEYLAETHLTGREEDHHSRL 459

Query: 468 LD 469
           +D
Sbjct: 460 VD 461


>gi|15839312|ref|NP_300000.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9187843|gb|AAF85759.1|AE004078_11 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 424

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 2/136 (1%)

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ T IATY+W+L+N
Sbjct: 14  GSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLAN 73

Query: 413 RKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDY 470
           +K E RRGKVQLI+A+  +  + RN GKK   +      +ILD+Y+ + +    S+  D 
Sbjct: 74  KKAEARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLGQTQEAAQSKWFDT 133

Query: 471 RTFGYRRIKVLRPLRM 486
           + FGY ++ + RPLR+
Sbjct: 134 QDFGYWKVTIERPLRL 149



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 10/94 (10%)

Query: 580 EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD+ L + E VP  E   I  +FVREV PH PDA+I        DK   +VGYEI+F
Sbjct: 335 EYEPDSALRDTEQVPLQEPGGIDAFFVREVLPHAPDAWI------ATDKT--QVGYEISF 386

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            R+FY+  P R L DI A++  +E Q   LL ++
Sbjct: 387 ARYFYKPVPLRTLADIRADILALEQQTEGLLHKI 420


>gi|326201154|ref|ZP_08191026.1| type I restriction-modification system, M subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325988722|gb|EGD49546.1| type I restriction-modification system, M subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 507

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 213/476 (44%), Gaps = 57/476 (11%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK A+ L G+     +   I     L+R+    +  R   ++++L  G    +++  ++
Sbjct: 15  LWKAADILRGELNAAQYKDYIFDLLFLKRMNDEFQTERETKKQEFLKQGMPAEEVDELLE 74

Query: 75  --VAGYSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAK-----AIFEDFDFSSTIA 125
                 SF+         L + N      L+    +  D  K      +    +F+    
Sbjct: 75  DPQVYVSFFVPERARWDNLKNLNLNIGPELDKAFKAIEDEPKNVELIGVLTTTNFNDKER 134

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             +K   L ++   F  ++L  D +    ++ + Y++LI+ F  E      +F TP +VV
Sbjct: 135 VSDKK--LSQLLLLFDTMQLDADNLESSDMLGDAYQYLIKEFADEGGAKGGEFYTPSEVV 192

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L           P     +YDPT G+GG L  ++ +V D G +   P  L   G
Sbjct: 193 QVLVNIL----------KPQEGDRIYDPTVGSGGMLIKSIEYVRDHGGN---PRNLSLFG 239

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPP 300
           QE+   T A+C   M+    +         +I++G T+   +       K F   L+NPP
Sbjct: 240 QEINLSTWAICKMNMIFHNAKG-------ADIRKGDTIRNPMHLEGGVLKTFDKVLANPP 292

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  K W  ++   +  H      RF  G+P  S G + F+ H+   L    N  G+   V
Sbjct: 293 FSLKNWGHEEAMADPYH------RFVYGVPPQSYGDLAFVSHMVASL----NAKGKMGTV 342

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF  R+G+ E +IR+   ++DLIEAIV LP++ F+  +I   L I++  K++ER+
Sbjct: 343 VPHGVLF--RSGA-EGKIRKGFAKDDLIEAIVGLPSNCFYGASIPAALMIINKNKSKERK 399

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQR--RQILDIYVSRENGKFSRMLDYRTF 473
           GK+  I+A+  +  ++N G K R+ ++D +   Q  D +  +E  KFS ++   T 
Sbjct: 400 GKILFIDASQGF--VKN-GNKNRLRDEDIKAITQAFDAFDDQE--KFSAVVSLNTI 450


>gi|189423916|ref|YP_001951093.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420175|gb|ACD94573.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 492

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 196/437 (44%), Gaps = 48/437 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGS 65
           S   L +++W  A  L G     D+ + I P    +R+ +   E  + A+ E     GG 
Sbjct: 6   SQQELESYLWGAATLLRGLIDAGDYKQFIFPLLFFKRVSDVYDEEYQQAMDES----GGD 61

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             +   F   AG+ + +  + +   +G T  +  + +  A+  D    IF D  +++   
Sbjct: 62  FAENHRFQIPAGFHWSDVRQ-TPKNVGMT-IQTAMRAIEAANPDQLTGIFGDAPWTNK-E 118

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL     L  + ++FS   L    VP+  + N YE LI++F  +    A +F T R VVH
Sbjct: 119 RLPDE-TLKDLIEHFSTQTLSVANVPEDELGNAYEFLIKKFADDSGHTAAEFYTNRTVVH 177

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T  LLDP        PG   ++YDPTCGTGG L  A+  V   G  ++    L  +GQ
Sbjct: 178 LMTQ-LLDP-------QPG--ESIYDPTCGTGGMLLSALAEVKRTGGEYR---TLKLYGQ 224

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG---KRFHYCLSNPPF 301
           E    T  +    + +  +E          I +G TL++  L  G   K+F   L+NPP+
Sbjct: 225 ERNLMTSGIARMNLFLHGIE-------DFQIARGDTLAEPKLIEGDRLKQFDVILANPPY 277

Query: 302 G-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             K+W  D+ A E +    + GR   G P        F  H+   L       GR AI+ 
Sbjct: 278 SIKQW--DRPAFESD----KWGRNFLGTPPQGRADYAFFQHILKSL----TKKGRCAILW 327

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF       E E+R  ++  DL+EA++ L  +LF+ + + + + +    KT ER+G
Sbjct: 328 PHGVLFRNE----EQEMRAKMIAQDLVEAVIGLGPNLFYNSPMESCVVVCRRNKTGERKG 383

Query: 421 KVQLINATDLWTSIRNE 437
           KV  I+A +  T  R +
Sbjct: 384 KVLFIDALNEVTRERAQ 400


>gi|83590508|ref|YP_430517.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073]
 gi|83573422|gb|ABC19974.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073]
          Length = 516

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 229/488 (46%), Gaps = 57/488 (11%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MTE T    ++L N++W+ A  + G      +   ILP   L+RL    E   + + E+ 
Sbjct: 1   MTENTNMDLSTLENWLWEAACVIRGAVDAPKYKDYILPLIFLKRLSDVFEDEIARLAEEI 60

Query: 60  L-AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAK--AIF 115
             +   +   +E    +  +     + +   +  +TN    L S + + + +N K   IF
Sbjct: 61  FDSIEEALKQVEEDHALVRFYIPPQARWDAISRQTTNIGEYLTSAVRAVARENPKLHGIF 120

Query: 116 EDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           E+ DF++ +A   +     LY + +  S   L    V   ++   YE+L+R+F     + 
Sbjct: 121 ENIDFNAQMAGQPVIDNDRLYNLIQVLSRHRLGLKDVEVDILGRAYEYLLRKFAEGQGQS 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GS 232
           A +F TPR+V  L  A LL+P        PG    +YDP CG+GG L  ++  + +  G 
Sbjct: 181 AGEFYTPREVTWL-MAYLLEP-------RPG--DEIYDPACGSGGLLIKSVLALKETYGD 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
             +I P+ + +GQE+   T A+      I  LE+D        I+ G T+++  FT    
Sbjct: 231 DPRIAPVKI-YGQEILYTTFAMAKMNAFIHDLEAD--------IRLGDTMARPAFTNPDG 281

Query: 290 --KRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             + F    +NP + +K+     ++D  ++        +FG G+P  S     ++ H+  
Sbjct: 282 SLRTFDKVTANPMWNQKFPLPLYEEDPFDR-------FKFG-GIPPASSADWGWIQHMFA 333

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRT 401
            L+     GG+ A+VL +  +  G    G   E +IR+  +ENDL+E ++ LP ++F+ T
Sbjct: 334 SLK----EGGKMAVVLDTGSVSRGSGNQGSNRERDIRKVFVENDLVECVILLPENMFYNT 389

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
                + +++  K ++   ++ LINA+ L+T    +G+ +  + D+  +Q+  IY   RE
Sbjct: 390 TAPGIIMVIN--KAKKHPAEILLINASKLFT----KGRPKNYMEDEHIKQVYSIYREWRE 443

Query: 461 NGKFSRML 468
               S+++
Sbjct: 444 EEGLSKII 451


>gi|89098145|ref|ZP_01171030.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL
           B-14911]
 gi|89087002|gb|EAR66118.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL
           B-14911]
          Length = 497

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 194/448 (43%), Gaps = 62/448 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVRE------------ 57
           L + +WK+A+ L G    +D+   I     L+RL + + E   + ++E            
Sbjct: 9   LESHLWKSADILRGSVDSSDYKNYIFGLLFLKRLSDVSEERKNNLIKEHGEEIGILLADD 68

Query: 58  --KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
             +Y  F   N   E   K A     +    +   L + N    LE  +     N K + 
Sbjct: 69  PDQYQFFVPENAKWEEIRKHA-EDIGSAINVAFEVLENENA--TLEGVLTPIDFNRKEVL 125

Query: 116 EDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            D    S + RL +   LL    +N S     PD     ++   YE+LI+ F  +  +  
Sbjct: 126 TD----SVLQRLLQHFSLLILTNENLS----EPD-----MLGRAYEYLIKMFADDAGKKG 172

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  VV L   L+        K   GM   +YDPTCG+GG L  ++++V   G + 
Sbjct: 173 GEFYTPSKVVELIVKLI--------KPEEGM--RVYDPTCGSGGMLIQSVDYVKHKGGN- 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P  L   GQE    T ++    +L+  L  D R +    I+Q   +         F  
Sbjct: 222 --PQTLSLFGQEKNLGTWSIAKMNLLLHGL-PDHRIEKGDTIRQPKLVEDGEIM--LFDR 276

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF  K+W ++    E EH +   GRF  GLP  + G   F+ H+   L+      
Sbjct: 277 VIANPPFSLKEWGRE----EAEHDS--YGRFQHGLPPKNAGDYAFIQHMVASLK----SN 326

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +V+    LF G A   E  IR+ LLE+DL+EA+V LP++LF+ T I   + I +  
Sbjct: 327 GMAGVVMPHGVLFRGGA---EGRIRQGLLESDLLEAVVGLPSNLFYGTGIPACILIFNRD 383

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKR 441
           K  ER G V  I     + + +N+   R
Sbjct: 384 KEAERNGNVLFIAGESEFKAGKNQNALR 411


>gi|116754513|ref|YP_843631.1| N-6 DNA methylase [Methanosaeta thermophila PT]
 gi|116665964|gb|ABK14991.1| N-6 DNA methylase [Methanosaeta thermophila PT]
          Length = 522

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 207/481 (43%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           ++L  ++W  A  + G      F   ILP   L+RL    E     + E+   FG  ++ 
Sbjct: 6   STLETWLWDAACAIRGPLDAPKFKDYILPLVFLKRLSDVFEDELDRLAEE---FGSRDVA 62

Query: 68  -----DLESFVKVA----GYSFY-----NTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                D      +A       FY       S     T G      +    +A  +   + 
Sbjct: 63  TRIVEDERERGTIANSRGSVRFYIPERARWSNIRKQTTGLGQYLTDAVRAVARENPRLRG 122

Query: 114 IFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +  DF++T A   +     L K+    S   L    V   ++   YE+L+R+F     
Sbjct: 123 VIDLVDFNATAAGQHIVPDEYLAKLVNVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQG 182

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230
           + A +F TPR+V  L  A +L+P+       PGM  T+YDP CG+GG L      + +  
Sbjct: 183 QSAGEFYTPREVAVL-MARILEPE-------PGM--TVYDPACGSGGLLIKCHLRLLETR 232

Query: 231 ----GSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                 H ++PP   P    GQE+ P T A+     +I  +E+D        I+ G T+ 
Sbjct: 233 GEQQNGHRRLPPEHAPLRLFGQEINPTTFAMARMNAVIHDMEAD--------IRLGDTMR 284

Query: 284 KDLF---TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              F   TG+   F    +NP     W  ++D   + ++N    RF  G+P  S     +
Sbjct: 285 NPAFRDATGRLMTFDLVTANP----MW--NQDFPTEVYENDPYERFRFGVPPSSSADWGW 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPT 395
           L H+   L    N  GR A+VL +  +  G    G   E +IRR  +ENDLIEA + LP 
Sbjct: 339 LQHMLASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRRAFVENDLIEAAILLPE 394

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T    ++ +++ RK   R G++ LINA+ L+     +G+ +  + D+    I  +
Sbjct: 395 NMFYNTTAPGFIIVVNRRK--RRPGEILLINASKLFA----KGRPKNYLADEHIETIARL 448

Query: 456 Y 456
           Y
Sbjct: 449 Y 449


>gi|307128877|ref|YP_003880893.1| type I restriction-modification system methyltransferase subunit
           [Dickeya dadantii 3937]
 gi|306526406|gb|ADM96336.1| Type I restriction-modification system methyltransferase subunit
           [Dickeya dadantii 3937]
          Length = 142

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA   S 
Sbjct: 8   QSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAEKQSG 67

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           IDL   + +VA +SFYNTSEYSL TLG+++T +NLE YI+ ++ N   +
Sbjct: 68  IDLGLVLPEVARFSFYNTSEYSLETLGASDTGDNLELYISQWAMNLAVV 116


>gi|146295059|ref|YP_001185483.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566749|gb|ABP77684.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 499

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 42/334 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR +V L   +L
Sbjct: 126 LLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMVNIL 185

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDP CGTGG L + ++HV + G     P +L   GQE    T
Sbjct: 186 ----------DPQAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKNLTT 232

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    + +   E         +I +G TL +  F      + F   ++NPPF  K+W 
Sbjct: 233 EAIARMNLFLHGQED-------FDIVRGDTLREPKFLVSDRLETFDCVIANPPFSLKEWG 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D  + +        GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 286 YDLWSADP------YGRKQYGLAPKTNGDFAWVQHMFASL----NEQGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E  IR  LL+ + IEAI+ + ++LF+ T I   + +L   +  + +  V +IN
Sbjct: 336 RGGA---EGAIRTKLLQENRIEAIIGVASNLFYGTGIPACILVLRKSRPADHQDHVLIIN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           A +++T    +G+ +  +++DQ   I +IY  +E
Sbjct: 393 AEEIFT----KGRAQNTLSNDQADDIFNIYRQQE 422


>gi|189499313|ref|YP_001958783.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189494754|gb|ACE03302.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 547

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 131/518 (25%), Positives = 212/518 (40%), Gaps = 80/518 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECALEPTRSAVR 56
           M    G+  SL ++IW  A  + G      + + ILP    +RL    +  L    + V 
Sbjct: 1   MANNNGNGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNA 111
            +  AF     D +          ++  E   S +   + R           IA  +   
Sbjct: 61  SRKKAFQLVRADHKLVRFYLPLVPFDPEEPVWSVIRKFSDRIGEGVTTHMRAIARENPLL 120

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + I +  DF++T    R      L  + +  S   L  D V   ++   YE+LIR+F   
Sbjct: 121 QGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKCLGLDDVEADIIGKSYEYLIRKFAEG 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA------ 223
             + A +F TP +V  + + +L           PGM   +YDP CG+GG L         
Sbjct: 181 GGQSAGEFYTPPEVGTIMSRVL--------APEPGM--DIYDPCCGSGGLLVKCEIAMEE 230

Query: 224 ------------------MNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIR 262
                             +N    C    + PP + P   +GQE   +T A+    M+I 
Sbjct: 231 KRREIKEGGHSCPPLHSELNGYPSCNGGLENPPSIAPLKLYGQEYIADTWAMANMNMIIH 290

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHK 317
                   D+   I+ G T     F  K+     F   ++NP + + W       E ++ 
Sbjct: 291 --------DMEGQIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEADYD 337

Query: 318 NGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-- 373
           N EL RF  G G P  S     ++ H+   L    N  GRAAIVL +  +  G   +G  
Sbjct: 338 NDELDRFPAGAGFPGKSSADWGWIQHIHASL----NNSGRAAIVLDTGAVSRGSGNAGTN 393

Query: 374 -ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  +R+W ++ND+IE+++ LP +LF+ T     +  L+  K  ER G V L+NA    +
Sbjct: 394 KEKSVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNRDKEIEREGCVLLVNA----S 449

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLD 469
            I  +G  +  I D+  ++I+D  +  +E  K SR+++
Sbjct: 450 RIFEKGDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVN 487


>gi|254448602|ref|ZP_05062061.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
 gi|198261791|gb|EDY86077.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
          Length = 499

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 52/339 (15%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR +V L   +L
Sbjct: 126 LLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMVNIL 185

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDP CGTGG L + ++HV + G     P +L   GQE    T
Sbjct: 186 ----------DPQAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKNLTT 232

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKK--- 304
            A+    + +   E         +I +G TL +  F      + F   ++NPPF  K   
Sbjct: 233 EAIARMNLFLHGQED-------FDIVRGDTLREPKFLVNDRLETFDCVIANPPFSLKEWG 285

Query: 305 ---WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
              W  D             GR   GL   ++G   ++ H+   L    N  GR A+VL 
Sbjct: 286 HALWSADP-----------YGRKQYGLAPKTNGDFAWVQHMFASL----NEQGRMAVVLP 330

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G A   E  IR  LL+ + IEAI+ + ++LF+ T I   + +L   +  + +  
Sbjct: 331 HGVLFRGGA---EGAIRTKLLQENCIEAIIGVASNLFYGTGIPACILVLRKSRPADHQDH 387

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           V +INA +++T    +G+ +  +++DQ  +I +IY  +E
Sbjct: 388 VLIINAEEIFT----KGRAQNTLSNDQADEIFNIYRQQE 422


>gi|118497300|ref|YP_898350.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella tularensis subsp.
           novicida U112]
 gi|194323604|ref|ZP_03057381.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. novicida FTE]
 gi|118423206|gb|ABK89596.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella novicida U112]
 gi|194322459|gb|EDX19940.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. novicida FTE]
          Length = 495

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 169/355 (47%), Gaps = 48/355 (13%)

Query: 113 AIFEDFDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRF 166
            IF   DF+   +     ++  +L  + K+F+   ++L P  +  + V+ + YE+LI  F
Sbjct: 114 GIFRGVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLDGNDVIGDSYEYLIANF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  +   +F TP  V  L  A+L+   D            +YDPTCG+G  L  A   
Sbjct: 174 ASDSGKKGGEFFTPSQVSSL-LAMLVQAKDG---------DEIYDPTCGSGSLLIKAAKE 223

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +   GS++        +GQE    TH++C   M +  + +D    L   I+    L  D 
Sbjct: 224 I---GSNN-----FAIYGQERNSTTHSLCRMNMFLHDI-NDANIQLGDTIRNPRILENDK 274

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              K+F   ++NPPF   KW  D D     +      RF  G+P  S G   F+ H+   
Sbjct: 275 L--KKFDVVVANPPFSLDKWGAD-DVTSDVY-----SRFEFGIPPKSKGDYAFIQHMLAS 326

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GR A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I  
Sbjct: 327 L----NESGRMAVVVPHGVLFRGAA---EGKIRQQIIDNNLLDAVIGLPSNLFFGTSIPA 379

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + +    K ++    V  I+A++ +   +N+ K    + DD  ++I D Y SRE
Sbjct: 380 CIMVF---KKQKDSNDVLFIDASNEFEKGKNQNK----LTDDNIKKIFDTYKSRE 427


>gi|268316649|ref|YP_003290368.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252]
 gi|262334183|gb|ACY47980.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252]
          Length = 527

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 208/479 (43%), Gaps = 65/479 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L  ++W  A  + G      F   ILP   L+RL    E     + E+Y +   +   
Sbjct: 6   STLETWLWDAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDEMDRLAEEYGSREVAQHI 65

Query: 69  LE-----SFVKVAGYS--FY---NTSEYSLSTLGSTNTRNNLESYIASFS---DNAKAIF 115
           +E       +   G S  FY   N    ++ T G       L   + + +      + + 
Sbjct: 66  VEEEREQGIIARGGGSVRFYIPENARWKAIRTRGQVGLGQFLTDAVRAVARENPRLQGVI 125

Query: 116 EDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +  DF++T A  R+     L ++    S   L    V   ++   YE+L+R+F     + 
Sbjct: 126 DIVDFNATAAGQRIVADEYLARLVDVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQGQS 185

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-----NHVA 228
           A +F TPR+V  L  A +L+P        PGM  T+YDP CG+GG L          H  
Sbjct: 186 AGEFYTPREVAVL-MARILEP-------QPGM--TVYDPCCGSGGLLIKCHLRLLETHGE 235

Query: 229 DCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           +   H ++P    P    GQE+ P T A+     +I  +E+D        I+ G T+   
Sbjct: 236 EQNGHRRLPAHHAPLQLFGQEINPATFAMARMNAVIHDMEAD--------IRLGDTMRHP 287

Query: 286 LF---TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            F   TG+   F    +NP + + +  D       ++N    RF  G+P  S     +L 
Sbjct: 288 AFRDETGRLMAFDLVTANPMWNQNFPTDL------YENDPYERFHLGIPPASSADWGWLQ 341

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDL 397
           H+   L    N  GR A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +L
Sbjct: 342 HMLASL----NDTGRMAVVLDTGAVSRGSGNQGASRERDIRKAFVERDLIEAVILLPENL 397

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F+ T  A  + I+ NRK +   G++ LINA+ L+     +G+ +  + D+    I  +Y
Sbjct: 398 FYNTT-APGIIIVINRK-KRHPGEILLINASKLFA----KGRPKNYLTDEHIETIARLY 450


>gi|59713720|ref|YP_206495.1| type I restriction-modification system methylation subunit [Vibrio
           fischeri ES114]
 gi|59481968|gb|AAW87607.1| type I restriction-modification system methylation subunit [Vibrio
           fischeri ES114]
          Length = 488

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 195/430 (45%), Gaps = 54/430 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVRE-----KYLAFG 63
           L  ++W  A  L G     D+ + I P    +R+ C +  E   +A+ E     +Y AF 
Sbjct: 7   LEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRI-CDVYDEEFENALAESDGDLEYAAFA 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            ++       +V   + +N    + + +G    +N + +   +  D  + IF D  +++ 
Sbjct: 66  ENH-----HFQVPKGAHWNDVRETTTNIGLA-LQNAMRAIEKANPDTLEGIFGDASWTNK 119

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL  A +L  + +++S   L+   VPD  + N YE+LI+ F  +    A +F T R V
Sbjct: 120 -ERLSDA-MLTNLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTNRTV 177

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +++ P        PG   ++YDPTCG+GG L +   H+ D G  ++    L  +
Sbjct: 178 VKLMT-MIMAP-------QPG--ESVYDPTCGSGGLLLNCALHLKDEGKEYR---TLKLY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE+   T A+    M +  +E         +I +G+TLS          K+F+  L+NP
Sbjct: 225 GQEINLLTSAIARMNMFMHGIE-------EFDIVRGNTLSNPGLLENDELKKFNVILANP 277

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+  K W++      K  ++   GR   G P        F  H+   L+L   G GR+  
Sbjct: 278 PYSIKSWDR------KAFESDPYGRNVWGTPPQGCADYAFQQHIQKSLDL---GNGRSIS 328

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E+ +RR ++E D +E ++ L  +LF+ + +   L I    K E +
Sbjct: 329 LWPHGILFR----DAETAMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIESK 384

Query: 419 RGKVQLINAT 428
           + K+  INA 
Sbjct: 385 KDKILFINAV 394


>gi|84385717|ref|ZP_00988748.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
 gi|84379697|gb|EAP96549.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
          Length = 488

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 190/430 (44%), Gaps = 54/430 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L  ++W  A  L G     D+ + I P    +R+    +       E   A   S+ DLE
Sbjct: 7   LEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRISDVYD------EEFENALADSDGDLE 60

Query: 71  SFVKVAGYSF-------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                  + F       +N +  +   +G    +N + +   +  D  + IF D  +++ 
Sbjct: 61  YAAFAENHHFQVPEGAHWNDARETTVNIGLA-LQNAMRAIEKANPDTLEGIFGDASWTNK 119

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL  A +L  + +++S   L+   VPD  + N YE+LI+ F  +    A +F T R V
Sbjct: 120 -ERLSDA-MLTNLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTNRTV 177

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +++DP        PG   ++YDPTCG+GG L +   H+   G  ++    L  +
Sbjct: 178 VKLMT-MIMDP-------QPG--ESVYDPTCGSGGLLLNCALHLKGEGKEYR---TLKLY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE+   T A+    M +  +E         +I +G+TLS          K+F+  L+NP
Sbjct: 225 GQEINLLTSAIARMNMFMHGIE-------EFDIVRGNTLSNPGLLENDELKKFNVILANP 277

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+  K W  D+ A E +      GR   G P        F  H+   L+L   G GR+  
Sbjct: 278 PYSIKSW--DRKAFESDPH----GRNVWGTPPQGCADYAFQQHIQKSLDL---GNGRSIS 328

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E+++RR ++E D +E ++ L  +LF+ + +   L I    K E +
Sbjct: 329 LWPHGILFR----DAETDMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIESK 384

Query: 419 RGKVQLINAT 428
           + K+  INA 
Sbjct: 385 KDKILFINAV 394


>gi|42525032|ref|NP_970412.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39577243|emb|CAE81066.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 585

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 154/334 (46%), Gaps = 52/334 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI  F +   + A +F TP +V  L   L+          +P     +YDPT
Sbjct: 161 VIGNAYEYLIANFAAGAGKKAGEFYTPSEVSQLLAKLV----------APQKGNRIYDPT 210

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +   G +         +GQE+   T A+    M +   +        
Sbjct: 211 CGSGSLLIRCAEQLTKKGEND-----FQIYGQEITGATWALAKMNMFLHGFDRSV----- 260

Query: 274 KNIQQGSTLSKDLF----TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGL 328
             I+ G T+   L     T  +F   ++NPPF  +KW      +E E KN    RF  G+
Sbjct: 261 --IENGDTIRSPLHLEDDTIMKFDIVVANPPFSLEKW-----GIE-EAKNDPYDRFSYGI 312

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL------L 382
           P  S G + F+ H+   L    N  G+AA+VL    LF G   S E +IR  +      L
Sbjct: 313 PPQSYGELAFVQHMIASL----NENGKAAVVLPHGVLFRG---SSEQKIREGIIKGTDVL 365

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR- 441
           + DL+EA++ LPT+LFF T I   + +L+  K  ER+GKV  INA   +   +N+ K R 
Sbjct: 366 KGDLLEAVIGLPTNLFFGTGIPAAIMVLNKNKPVERKGKVLFINADLEFQEGKNQNKLRV 425

Query: 442 ----RIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                I+ + +  +  ++Y   E   FSR++D R
Sbjct: 426 SDIDHIVKNFKEFKTENLY-RHEEKHFSRVVDVR 458


>gi|320449901|ref|YP_004201997.1| type I restriction-modification system subunit M [Thermus
           scotoductus SA-01]
 gi|320150070|gb|ADW21448.1| type I restriction-modification system, subunit M [Thermus
           scotoductus SA-01]
          Length = 522

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 208/476 (43%), Gaps = 66/476 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W  A  + G      F   ILP   L+RL    E     V  +    GG  + L
Sbjct: 5   TLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFE---DEVARRAQVLGGEKVVL 61

Query: 70  ESF--------VKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           +          V +  +     + +      T G      +    +A  + +   + +  
Sbjct: 62  DLLEQERQRGQVTLVRFFIPENARWQAIRRQTTGLGQYLTDAVRAVARENPSLAGVIDMV 121

Query: 119 DFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF++T A  R+     L  +    S   L  + V   ++   YE+L+R+F     + A +
Sbjct: 122 DFNATAAGQRIISDEHLKSLIDVLSRHRLGLEDVEPDILGRAYEYLLRKFAEGQGQSAGE 181

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-----G 231
           F TPR+V  L  A LL+P+       PGM  T+YDP CG+GG L      + +       
Sbjct: 182 FYTPREVAIL-MARLLEPE-------PGM--TVYDPACGSGGLLIKCHLRLLERFGTMEN 231

Query: 232 SHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
            H ++P  + P    GQE+ P T A+     +I  LE+D        I+ G T+    F 
Sbjct: 232 GHLRLPNQIKPLRLFGQEINPATFAMARMNAVIHDLEAD--------IRLGDTMRHPAFL 283

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   ++NP + +K+ ++       ++N    RF  G P  S     ++ H+ 
Sbjct: 284 DAAGRLQTFDLVVANPMWNQKFGQEL------YENDPFERFRFGAPPSSSADWGWMQHML 337

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400
             L    N  GR A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +LF+ 
Sbjct: 338 ASL----NEKGRMAVVLDTGAVSRGSGNQGANRERDIRKAFVEADLIEAVILLPENLFYN 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           T     + +++  + + + G++ LINA+ L+T    +G+ +  + D+  ++I D+Y
Sbjct: 394 TTAPGVILVIN--RAKRKPGEILLINASKLFT----KGRPKNYLADEHIQRIADLY 443


>gi|312876125|ref|ZP_07736113.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797111|gb|EFR13452.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 599

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 211/478 (44%), Gaps = 54/478 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    +++ + I     L+      E  R  +++++ A G S   +
Sbjct: 10  QLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELKDRFKAMGFSEKQI 69

Query: 70  ESFVK---VAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              ++     G +F+   +     +        N  N   S +   +     + +  DF+
Sbjct: 70  HELLEDPSSYGDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELDGVLKHIDFN 129

Query: 122 STIARLE-KAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +   +   K   L  +  +F+  +L P     PD ++   YE+L++ F     +   +F 
Sbjct: 130 AVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPD-LLGAAYEYLLKEFADSAGKKGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  L   L+        K   GM  ++YDPT G+GGFL +A ++V + G +   P 
Sbjct: 189 TPSHVKKLMVRLV--------KPREGM--SIYDPTVGSGGFLIEAFHYVEEQGQN---PR 235

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQEL   T ++C   M++  +          +I+    L+  +F      KRF  
Sbjct: 236 NLALYGQELNGLTWSICKMNMILHGIND-------AHIENEDVLTTPMFLENGYIKRFDR 288

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF + + +     E+  K G    F P   K +D  ++FL H+   L+      G
Sbjct: 289 ILANPPFSENYTRANMQFEERFKYG----FTPENGKKAD--LMFLQHMIASLK----DDG 338

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   + +++  K
Sbjct: 339 VMATVMPHGVLFRG---GQEKVIREGIVRDDLIEAIIGLPPKLFYNTGIPACIIVINKNK 395

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYR 471
            E+ + K+  INA   +     EG+ +  +  +   +I+ ++   +E  K+SR++D +
Sbjct: 396 PEQLKNKILFINADREY----GEGRNQNFLRPEDIEKIVTVFDEKKEIPKYSRLVDIK 449


>gi|15612488|ref|NP_224141.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4156043|gb|AAD07001.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 815

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 209/474 (44%), Gaps = 64/474 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKAKN-N 48

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
           ++S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 49  MDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
           +GQE +  T A+C   M+   L +    D++K     STLS  LFT      K F Y ++
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSATADIAKG--GSSTLSNPLFTTENGMLKTFDYVVA 266

Query: 298 NPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L    N  G
Sbjct: 267 NPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL----NPTG 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + A++L    LF G A   E++IR+ LL    I+ ++ L  +LF+ T+I   + +L    
Sbjct: 323 KGAVILPHGVLFRGNA---EAQIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIVLDKEN 379

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
              R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 380 AHARKG-VFVIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 429


>gi|160903325|ref|YP_001568906.1| N-6 DNA methylase [Petrotoga mobilis SJ95]
 gi|160360969|gb|ABX32583.1| N-6 DNA methylase [Petrotoga mobilis SJ95]
          Length = 511

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 215/488 (44%), Gaps = 58/488 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +      +L N++W+ A  + G      +   ILP   L+RL    E   + + EK+ 
Sbjct: 1   MAQNNLDTKTLENWLWEAACKIRGPIDAPKYKDYILPLIFLKRLSDVFEDELNELSEKF- 59

Query: 61  AFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNA 111
              GS    E F ++      FY   E   S +    T  N+  Y       IA ++   
Sbjct: 60  ---GSLETAEEFSRIDPGLVRFYLPPEARWSEVAKKTT--NVGEYLTDAVRTIARYNPKL 114

Query: 112 KAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + + +  DF++T    R+    +L  +        L    V   ++   YE+L+R+F   
Sbjct: 115 QGVIDIVDFNATAGGQRIISDDVLVALIDVLGRHRLGLKDVDPDILGRAYEYLLRKFAEG 174

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + +L DP        PG    +YDP CG+GG L  A     +
Sbjct: 175 SGQSAGEFYTPGEVAILMSKIL-DP-------KPG--NEVYDPCCGSGGLLIKAHLRFKE 224

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             S  +    L  +GQE+   T+A+    + I         D+   I  G T+++  FT 
Sbjct: 225 KYSEDRTKEPLKFYGQEILHSTYAMAKMNIFIH--------DMEAQIALGDTMNRPAFTT 276

Query: 290 -----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K+F    +NP + + +       +  ++N    RF  G P  +     ++ H+  
Sbjct: 277 SEGPLKKFDLVTANPMWNQTFS------QSVYENDPYNRFVFGYPPSNSADWGWIQHMFA 330

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRT 401
            L+      G+ A+V+ +  +  G    G   E +IR+  +E DL+E+++ LP +LF+ T
Sbjct: 331 SLK----NDGKMALVIDTGAVSRGSGNVGKNRERDIRKEFVEKDLVESVLLLPENLFYNT 386

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
           +    + +++  K  +R+ ++ LINA+ L+     +G+ +  + D+   +I +IY++ +E
Sbjct: 387 SAPGVIIVINKLKPAQRQDQILLINASKLY----EKGRPKNFLPDESVERIAEIYLNWKE 442

Query: 461 NGKFSRML 468
               S+++
Sbjct: 443 EEGISKII 450


>gi|218247023|ref|YP_002372394.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218167501|gb|ACK66238.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 522

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 224/491 (45%), Gaps = 66/491 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAV----RE 57
           + S  SL ++IW  A  + G  +   +   ILP    +RL C +   E  R AV    RE
Sbjct: 13  SNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRL-CDVFDDELNRIAVKVKTRE 71

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAI 114
           K       + +L  F         + + +S+    S      L  Y   IA  +   K I
Sbjct: 72  KAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKGI 131

Query: 115 FEDFDFSSTIA--------RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +  DF++TI         RL  + L+ KI +   G++   D  PD ++   YE+LIR+F
Sbjct: 132 IDRVDFNATIHGERELDDDRL--SNLIEKISEKRLGLK---DVEPD-IIGRSYEYLIRKF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +E  + A +F TP++V  +  A ++ P        PGM   +YDP CG+ G L      
Sbjct: 186 -AESGKSAGEFYTPKEV-GIIMAKIMQP-------QPGM--AIYDPCCGSAGLLIKCQLV 234

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLS 283
           +A+     +    L  +GQE   +T A+    M+I  +E       S      +QG  L+
Sbjct: 235 LAESQEKGEKYAPLQLYGQEYTGDTWAMANMNMIIHDMEGKIEIGDSFRFPKFKQGGNLA 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMH 341
           +       F   ++NP + + W       E+++   E GRF  G G P  S     ++ H
Sbjct: 295 Q-------FDRVVANPMWNQNW-----FTEQDYDGDEWGRFPQGAGFPG-SKADWGWVQH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L+L     G++AIVL +     G   +    E E+R+W +E D+IE ++ LP +LF
Sbjct: 342 IWASLQLH----GQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLF 397

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+    + IL+  K+E R+ ++ LINA+  +     +G  +  I+D    +I+  +++
Sbjct: 398 YNTSAPGIILILNKAKSEARKHQLLLINASLEFA----KGDPKNYISDQGINRIVTAFLN 453

Query: 459 -RENGKFSRML 468
             E  KFSR++
Sbjct: 454 WEEQDKFSRIV 464


>gi|313896404|ref|ZP_07829955.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974828|gb|EFR40292.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 806

 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 45/335 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  + ++ S +++        +M + YE+LI++F     + A +F TPR +V L   LL 
Sbjct: 441 LKDLVEHMSKVKVGNKNYTADIMGDSYEYLIKKFADMSKKNAGEFYTPRSIVKLMVRLL- 499

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-SHHKIPPILVPHGQELEPET 251
           DP        PG   ++YDP CGTGG   ++++H+ +   ++ KI      +GQE    T
Sbjct: 500 DP-------RPG--ESVYDPACGTGGMCIESIHHMKNSKLTYGKI------YGQENNLST 544

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    + +        +D+   I+QG TL K LF      K F   L+NPPFG  KW 
Sbjct: 545 SAIARMNLYLH-----GAKDV--QIRQGDTLRKPLFLEGGKLKTFDCVLANPPFGMSKWG 597

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D         + + GR   G P  ++    +L H+   ++      GR A+VL    LF
Sbjct: 598 ADV------FDSDQYGRNIWGCPTDANADFAWLQHMIKSMD---KDNGRCAVVLPQGVLF 648

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           +G     E  IR+ +++ DL+EAI+ L + +F+ T ++  +  L+ +K  + +G++ LI+
Sbjct: 649 HG---GKEGSIRKEIIKADLLEAIITLASGVFYSTGVSACILFLTKKKEHKHKGRICLID 705

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            ++++T +R     + I++D+    +   Y   E+
Sbjct: 706 GSEVYTPMR----AQNILSDENVDTLYQFYADYED 736


>gi|163761335|ref|ZP_02168410.1| Type I restriction-modification system M subunit [Hoeflea
           phototrophica DFL-43]
 gi|162281492|gb|EDQ31788.1| Type I restriction-modification system M subunit [Hoeflea
           phototrophica DFL-43]
          Length = 496

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 40/333 (12%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +F+D DF++   R   A +L K+ ++F    L    V   V+   YE+LI +F  +  
Sbjct: 108 RGVFQDVDFNNK-ERFPDA-MLEKLLQHFETYRLRKSDVEPDVLGQAYEYLIAQFADDAG 165

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP+ VV L    L        K   GM  ++YDPTCG+GG L +A++H+   G
Sbjct: 166 KKGGEFYTPKMVVRLIVECL--------KPEEGM--SIYDPTCGSGGMLLEAVHHLERQG 215

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
              K P  L   GQE    T A+C   + +  +      D +K  +  + L     TG  
Sbjct: 216 ---KNPKSLSLFGQEKNLNTWAICQMNLFLHDI------DDAKVARGDTLLEPKHLTGEG 266

Query: 290 ----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               + F   L+NPPF  K W  D  +     +    GR   G P  S G + F+ H+  
Sbjct: 267 VKAIRTFDRVLANPPFSLKSWGHDVWS-----QGDAYGRDRYGCPPKSYGDLAFVQHMVA 321

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G   +VL    LF G A   E  IR  L+ +DL+EA++ L  +LF+   I 
Sbjct: 322 SLKED----GVCGVVLPHGVLFRGGA---EGRIREGLIRDDLVEAVIGLAPNLFYGAGIP 374

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
             + IL  +K E R+GK+ ++N  +     +N+
Sbjct: 375 ACILILRKQKPEARKGKILIVNGAEQKVDGKNQ 407


>gi|254372672|ref|ZP_04988161.1| hypothetical protein FTCG_00237 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570399|gb|EDN36053.1| hypothetical protein FTCG_00237 [Francisella novicida GA99-3549]
          Length = 495

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 48/355 (13%)

Query: 113 AIFEDFDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRF 166
            IF   DF+   +     ++  +L  + K+F+   ++L P  +  + V+ + YE+LI  F
Sbjct: 114 GIFRGVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLEGNDVIGDSYEYLIANF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  +   +F TP  V  L  A+L+   +            +YDPTCG+G  L  A   
Sbjct: 174 ASDSGKKGGEFFTPSQVSSL-LAMLVQAKEG---------DEIYDPTCGSGSLLIKAAKE 223

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +   GS++        +GQE    TH++C   M +  + +D    L   I+    L  D 
Sbjct: 224 I---GSNN-----FAIYGQERNSTTHSLCRMNMFLHDI-NDANIQLGDTIRNPRILENDK 274

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              K+F   ++NPPF   KW  D      +  +    RF  G+P  S G   F+ H+   
Sbjct: 275 L--KKFDVVVANPPFSLDKWGAD------DLTSDVYSRFEFGIPPKSKGDYAFIQHMLAS 326

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GR A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I  
Sbjct: 327 L----NESGRMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPA 379

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + +    K ++    V  I+A++ +   +N+ K    + DD  ++I D Y SRE
Sbjct: 380 CIMVF---KKQKDSNDVLFIDASNEFEKGKNQNK----LTDDNIKKIFDTYKSRE 427


>gi|282900511|ref|ZP_06308456.1| Type I restriction-modification system methyltransferase subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194611|gb|EFA69563.1| Type I restriction-modification system methyltransferase subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 187

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 3/171 (1%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIW  A+ +   FK   +  VILPFT+LRRLEC L+PT+  V E Y  +     +L+S
Sbjct: 8   VNFIWSIADLIRDTFKRGKYQDVILPFTVLRRLECVLQPTKVEVLEAYDHYKNKLDNLDS 67

Query: 72  FV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           F+ K +G++FYN++ Y    L     +   NL+ YI SFS N + + E FDF +TI +LE
Sbjct: 68  FLCKKSGFAFYNSAPYDFQKLLDDPKHLAANLKLYINSFSANMREVLEKFDFPNTIDKLE 127

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++ LL+ + + F  I+LHPD V +  M  I+E LIR+F   + E   +  T
Sbjct: 128 QSELLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFT 178


>gi|84489290|ref|YP_447522.1| putative type I restriction-modification system, methyltransferase
           subunit [Methanosphaera stadtmanae DSM 3091]
 gi|84372609|gb|ABC56879.1| putative type I restriction-modification system, methyltransferase
           subunit [Methanosphaera stadtmanae DSM 3091]
          Length = 508

 Score =  127 bits (318), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 199/452 (44%), Gaps = 63/452 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGGSNIDLESF- 72
           +W  A+ L G+    +F   +L F   R L   LE T    + E  + F  +  D E   
Sbjct: 8   LWAIADKLRGNMDANEFKNYMLGFIFYRYLSEKLEMTLNELLEEDGINFQEAYQDEELIE 67

Query: 73  ------VKVAGYSFYNTSEYS------------LSTLGSTNTRNNLESYIASFSDNAKAI 114
                 ++  GY       +S            L  L +     N  S+     D+ + +
Sbjct: 68  DLKEEGIEKLGYFIQPKYLFSSVINEIDKGREILECLSNAFIEINDSSFNTESQDDFQNL 127

Query: 115 FEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FED D +S+       EK  L+  I ++ S I+   +     ++ + YE+LI +F S   
Sbjct: 128 FEDVDLNSSKLGNTNAEKNKLISGILQDISDIDFELEKDNSDILGDAYEYLISQFASSAG 187

Query: 172 EGAEDFMTPRDV-VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           + A +F TP++V   LA  + L+            ++++YDPTCG+G  L   ++  AD 
Sbjct: 188 KKAGEFYTPQEVSTILARIVTLNK---------TRLKSVYDPTCGSGSLLL-RVSKEADV 237

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              +         GQEL   T+ +    M++  ++ +       NI+QG +L  D     
Sbjct: 238 SEFY---------GQELNQTTYNLARMNMILHGVKYNHF-----NIKQGDSLENDRHEEL 283

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   ++NPPF  KW  DK  +  E  +G    +G   PK S     F+ H+   L    
Sbjct: 284 KFDAVVANPPFSAKWSSDKSFINDERFSG----YGKLAPK-SKADYAFVQHMIYHL---- 334

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWI 409
           N  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP ++F+ T+I T   I
Sbjct: 335 NEQGTLAVVLPHGVLFRGAA---EGTIRKYLIKELNYLDAVIGLPKNIFYGTSIPT--CI 389

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L  +K  E    +  I+A++ +   +N+ K R
Sbjct: 390 LVFKKCREEDDNILFIDASEYYEKAKNQNKLR 421


>gi|78358468|ref|YP_389917.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220873|gb|ABB40222.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 505

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 189/436 (43%), Gaps = 37/436 (8%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L+  +W+ A  L G     DF   I P    +RL    +   +   E+       +++
Sbjct: 16  GTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYAVALEE----SDGDVE 71

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTI 124
              F +   +       +      S N  + L+  +        D    IF D  +++  
Sbjct: 72  FAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK- 130

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL  A LL  + ++FS + L        ++   YE+LI++F    ++ A +F TPR VV
Sbjct: 131 DRLSDA-LLKDLIEHFSSLNLGNKHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSVV 189

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L          +P    T+YDP CGTGG L +A++HV + G    +  +   +G
Sbjct: 190 ALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEHGGDENLM-LGKLYG 238

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE    T ++    + +   E D   + S  ++  +  S D      F   ++NPPF  +
Sbjct: 239 QEKNLTTSSIARMNLFLHGAE-DFHIERSDTLRLPAFYSGDSLA--TFDCVIANPPFSLE 295

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           KW  D         N   GR   GLP    G   ++ H+   +       GR A+VL   
Sbjct: 296 KWGDDV------WINDPYGRNFAGLPPAKSGDFAWVQHMIKSM---ARKTGRMAVVLPHG 346

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF     S E EIRR LLE D++EA++ L  ++F+ T++A  + +  + K +  R KV 
Sbjct: 347 VLFRM---SKEGEIRRKLLEMDMLEAVIGLGQNIFYGTSLAPCVLVFRDSKPKAHRQKVL 403

Query: 424 LINATDLWTSIRNEGK 439
            I+A+  + + R + +
Sbjct: 404 FIDASKEFKTGRAQNE 419


>gi|146297671|ref|YP_001181442.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411247|gb|ABP68251.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 814

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 211/478 (44%), Gaps = 54/478 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    +++ + I     L+ +    E  R  +++++ A G S   +
Sbjct: 10  QLETHLFKAADILRGKMDASEYKEYIFGMLFLKYISDVFEEKRHELKDRFKAMGFSERQI 69

Query: 70  ESFVK---VAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              ++     G +F+   +     +        N  N   S +   +     + +  DF+
Sbjct: 70  HELLEDPSSYGDAFFVPEKARWGNILKLKEDVGNQLNKALSALEEANPELDGVLKHIDFN 129

Query: 122 STIARLE-KAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +   +   K   L  +  +F+  +L P     PD ++   YE+L++ F     +   +F 
Sbjct: 130 AVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPD-LLGAAYEYLLKEFADSAGKKGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  L   L+        K   GM  ++YDPT G+GGFL +A ++V + G +   P 
Sbjct: 189 TPSHVKKLMVRLV--------KPREGM--SIYDPTVGSGGFLIEAFHYVEEQGQN---PR 235

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQEL   T ++C   M++  +          +I+    L+  +F      KRF  
Sbjct: 236 NLALYGQELNGLTWSICKMNMILHGIND-------AHIENEDVLTTPMFLENGYIKRFDR 288

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF + + +     E+  K G    F P   K +D  ++FL H+   L+      G
Sbjct: 289 ILANPPFSENYTRANMQFEERFKYG----FTPENGKKAD--LMFLQHMIASLK----DDG 338

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   + +++  K
Sbjct: 339 VMATVMPHGVLFRG---GQEKVIREGIVRDDLIEAIIGLPPKLFYNTGIPACIIVINKNK 395

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYR 471
            E  + K+  INA   +     EG+ +  +  +   +I+ ++   +E  K+SR++D +
Sbjct: 396 PEHLKNKILFINADREY----GEGRNQNFLRPEDIEKIVTVFDEKKEIPKYSRLVDIK 449


>gi|302343962|ref|YP_003808491.1| type I restriction-modification system, M subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301640575|gb|ADK85897.1| type I restriction-modification system, M subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 505

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 187/438 (42%), Gaps = 45/438 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L+  +W+ A  L G     DF   I P    +RL    +   +   E+       + +
Sbjct: 16  GTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYAVALEE----SDGDAE 71

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTI 124
              F +   +       +      S N  + L+  +        D    IF D  +++  
Sbjct: 72  FAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK- 130

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL  A LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TPR VV
Sbjct: 131 DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSVV 189

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L          +P    T+YDP CGTGG L +A++HV + G    +  +   +G
Sbjct: 190 ALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEHGGDENLM-LGKLYG 238

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPP 300
           QE    T ++    + +   E         +I++G TL    F        F   ++NPP
Sbjct: 239 QEKNLTTSSIARMNLFLHGAED-------FHIERGDTLRLPAFYSGDSLATFDCVIANPP 291

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  +KW  D         N   GR   GLP    G   ++ H+   +       GR A+V
Sbjct: 292 FSLEKWGDDV------WINDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARKTGRMAVV 342

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF     S E EIRR LLE D++EA++ +  ++F+ T +A  + +  + K +  R
Sbjct: 343 LPHGVLFRM---SKEGEIRRKLLEMDILEAVIGVGQNIFYGTGLAPCVLVFRDSKPKAHR 399

Query: 420 GKVQLINATDLWTSIRNE 437
            KV  I+A+  + + R +
Sbjct: 400 QKVLFIDASKEFKTGRAQ 417


>gi|328675904|gb|AEB28579.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida 3523]
          Length = 495

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 168/355 (47%), Gaps = 48/355 (13%)

Query: 113 AIFEDFDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRF 166
            IF   DF+   +     ++  +L  + K+F+   + L P  +  + V+ + YE+LI  F
Sbjct: 114 GIFRGVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLNLSPSKLEGNDVIGDSYEYLIANF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  +   +F TP  V  L  A+L+   +            +YDPTCG+G  L  A   
Sbjct: 174 ASDSGKKGGEFFTPSQVSSL-LAMLVQAKEG---------DEIYDPTCGSGSLLIKAAKE 223

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +   GS++        +GQE    TH++C   M +  + +D    L   I+    L  D 
Sbjct: 224 I---GSNN-----FAIYGQERNSTTHSLCRMNMFLHDI-NDANIQLGDTIRNPRILENDK 274

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              K+F   ++NPPF   KW  D D     +      RF  G+P  S G   F+ H+   
Sbjct: 275 L--KKFDVVVANPPFSLDKWGAD-DVTSDVY-----SRFEFGIPPKSKGDYAFIQHMLAS 326

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GR A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I  
Sbjct: 327 L----NESGRMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPA 379

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + +    K ++    V  I+A++ +   +N+ K    + DD  ++I D Y SRE
Sbjct: 380 CIMVF---KKQKDSNDVLFIDASNEFEKGKNQNK----LTDDNIKKIFDTYKSRE 427


>gi|30250441|ref|NP_842511.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30139282|emb|CAD86434.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 448

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 205/467 (43%), Gaps = 54/467 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAV 55
           M++   + + L + +W++A  L G     DF   I P    +R+     E   E      
Sbjct: 1   MSDQHITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDETG 60

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
            E+   F  S+       ++     +N      S +G+   R   E   A+  D    +F
Sbjct: 61  DEQLAWFPESHR-----FQIPEDCHWNDVRTKASNVGTALQRAMREIEKAN-PDTLYGVF 114

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A 
Sbjct: 115 GDAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVSSDLLGDAYEYLIKKFADATNKKAG 172

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV L   +L DP +A          T+YDP CGTGG L  A+ HV +   H  
Sbjct: 173 EFYTPRSVVRLMIDML-DPKEA---------ETIYDPACGTGGMLLAAVQHVKE--QHGD 220

Query: 236 IPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           +  +    +GQE    T ++    + +  +E          + +G TL    F       
Sbjct: 221 VKRLWGKLYGQEKNLTTSSIARMNLFLHGIED-------FQVVRGDTLRNPAFFEVDRLA 273

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            F   ++NPPF  +KW +D         N   GR   GLP  S G   ++ H+   +   
Sbjct: 274 TFDCVIANPPFSLEKWGEDL------WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM--- 324

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  GR A+VL    LF  R G  E  IR+ LLE DL+EA++ L  +LF+ T +A  + +
Sbjct: 325 ADVIGRMAVVLPQGALF--RKGV-EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIMV 381

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            + RK  + + KV + +A+ L+      G+ +  +  +   +IL  Y
Sbjct: 382 CAKRKPAKHKNKVLIADASRLF----RRGRAQNHLEPEHATEILSWY 424


>gi|168179782|ref|ZP_02614446.1| type I restriction-modification system, M subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669249|gb|EDT81225.1| type I restriction-modification system, M subunit [Clostridium
           botulinum NCTC 2916]
          Length = 511

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 211/483 (43%), Gaps = 79/483 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------------- 49
           A+L   +W  A DL G+ +  +F   IL     R L   +E                   
Sbjct: 9   ANLHARLWDIANDLRGNMEANEFKNYILGLIFYRYLSEKVEGRAENLLKEDNISYREAWE 68

Query: 50  --PTRSAVREKYLAFGGSNID----LESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLES 102
               R A++E+ LA  G  I+      S +K        T  + +  L GS N  +  ES
Sbjct: 69  DDEYRQALQEELLAQIGYFIEPKYLFSSLMKEI-----ETGNFDVEMLQGSIN--DITES 121

Query: 103 YIASFS-DNAKAIFEDFDFSST-IAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            +   S D+   +F+D D +ST + R    ++ L+ K+  N S I+   D     V+ + 
Sbjct: 122 TLGHKSQDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGDA 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  +   L+      L        +++YDP CG+G 
Sbjct: 182 YEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      V+   +  K       +GQEL   T+ +    ML+  + S  R D    I+ 
Sbjct: 234 LLL----RVSKEANVRKF------YGQELTSTTYNLARMNMLLHDV-SYERFD----IRN 278

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             TL        +F   ++NPP+  KW  DK  ++ E        +G   PK S     F
Sbjct: 279 DDTLENPQHIDMKFDAVVANPPYSAKWSADKKFLDDER----FSAYGKLAPK-SKADYAF 333

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDL 397
           + H+  +L    N GG  A+VL    LF G A   E  IR++L+ E + ++ ++ LP ++
Sbjct: 334 VQHMIYQL----NEGGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDGVIGLPANI 386

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + +   +K+ E    V  I+A+  +     +GK + ++ D    +I+  Y+
Sbjct: 387 FFGTSIPTVILVF--KKSRENSDNVMFIDASREF----EKGKNQNVLKDKDVEKIISTYI 440

Query: 458 SRE 460
            RE
Sbjct: 441 KRE 443


>gi|308270633|emb|CBX27245.1| hypothetical protein N47_A12740 [uncultured Desulfobacterium sp.]
          Length = 491

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 191/429 (44%), Gaps = 46/429 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGS 65
           +   L +++W  A  L G     DF + I P    +R+ +   E  ++A+ E      G+
Sbjct: 2   TKKQLEDYLWGAANILRGMIDAADFKQYIFPLLFFKRISDVWDEEYQTALNE-----SGN 56

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSST 123
           ++D   F +   +       +      + +    L+  I+        +  D   D   T
Sbjct: 57  DLDYAGFRENHRFQIPKGCHWEDVRKKTIDVGAALQKAISGIEKANFEMLHDVFGDAQWT 116

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             R      +  + ++FS ++L    VP  +M   YE+LI++F  +    A +F T R V
Sbjct: 117 NKRRMSDEKMLDLIEHFSQMDLTVSNVPHDIMGEGYEYLIKKFADDSGHTAAEFYTNRTV 176

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +  DP  A          ++YDPTCG+GG L  ++ H+ + G  ++    L  +
Sbjct: 177 VKLMTQIT-DPQSA---------ESIYDPTCGSGGILLSSVLHLKERGKEYRN---LKLY 223

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTG---KRFHYCLSNP 299
           GQEL   T A+    M +  ++          I QG TL S  +      K+F   ++NP
Sbjct: 224 GQELNLITSAIARINMFMHNVDEFL-------IVQGDTLESPQILENDELKQFDVIMANP 276

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+  K+W       +K+  N   GR   G P        F  H+   L+  P+ G R+ +
Sbjct: 277 PYSVKRWN------QKKWMNDPFGRNIWGTPPQGCADYAFQQHIMKSLK--PDTG-RSVV 327

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       ES+IRR ++E D ++A++ L  +LF+ +++ + L +   +K +ER
Sbjct: 328 LWPHGVLFR----DAESQIRRKMIEEDYVDAVIGLGKNLFYNSSMESCLLVCRMKKPKER 383

Query: 419 RGKVQLINA 427
           +GK+  I+A
Sbjct: 384 KGKIIFIDA 392


>gi|262369032|ref|ZP_06062361.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii
           SH046]
 gi|262316710|gb|EEY97748.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii
           SH046]
          Length = 533

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 165/339 (48%), Gaps = 46/339 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +D+   +FED D +ST  +L     ++  L+ K+  +   I+         V+ + YE+L
Sbjct: 141 ADDFANLFEDLDLNST--KLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYL 198

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F S   + A +F TP+ V  L   ++    D L        R++YDPTCG+G  L  
Sbjct: 199 IGEFASGAGKKAGEFYTPQTVSTLLAKIVTQGKDRL--------RSVYDPTCGSGSLLLR 250

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGST 281
               V D           + +GQE+   T+ +    M++  +        +K +I+Q +T
Sbjct: 251 VKREVKDVD---------MIYGQEMNRTTYNLARMNMVLHDVH------FAKFDIKQENT 295

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L++     K+F   ++NPPF  KW  D   ++ E +    G+  P     S   M F+ H
Sbjct: 296 LTRPQHLDKKFDAVVANPPFSAKWSADPLFLQDE-RFAAYGKLAPS----SKADMAFVQH 350

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           +  +L+      G  A+VL    LF    GS E  IR++L+E  ++++AI+ LP ++F+ 
Sbjct: 351 MLYQLD----DNGTMAVVLPHGILFR---GSSEGVIRQYLIEQMNVVDAIIGLPANIFYG 403

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           T+I T + +L  +K+ E+ G +  I+A++ +   +N+ K
Sbjct: 404 TSIPTCILVL--KKSREQSGNILFIDASNDFEKQKNQNK 440


>gi|88707233|ref|ZP_01104920.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
 gi|88698526|gb|EAQ95658.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
          Length = 497

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 210/467 (44%), Gaps = 52/467 (11%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGG 64
            +++L + +W+ A  L G     TD+   ILP    +R+ +C  E T  A       FG 
Sbjct: 3   QSSNLKSTLWEAANTLRGSAVDRTDWKGYILPLLFFKRISDCWDEETAEASE----LFGD 58

Query: 65  SNIDLESFV---KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            +  L   +   +V     +N    +   +G+   ++ ++    +  D    IF   D+ 
Sbjct: 59  PDPSLYQEMHRFQVPEGCHWNDVRGTAQNVGAA-LKHAMQEIERANPDTLYRIFGAADWG 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS-EVSEGAEDFMTP 180
           +     ++  LL  + + FS I+L  ++V   ++ + YEHL+ +F        A +F TP
Sbjct: 118 NKEKFTDE--LLKDLIEGFSSIKLGNNSVDTDILGDAYEHLVGKFADVNRRNKAGEFYTP 175

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV +   +L DP +           ++YDP CGTGG L  A++HV   G   +     
Sbjct: 176 RSVVRMMVEIL-DPKEG---------ESIYDPACGTGGMLLAAIDHVKRNGGDPRTFFGK 225

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYC 295
           + +GQE    T +V    +++  +E          + +  TL    FT        F   
Sbjct: 226 I-YGQEKNLTTSSVARMNLVLHGIED-------FQVAREDTLRDPAFTDGAGGLATFDCV 277

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF  K+W ++        +N   GR   G+P  S G   F+ H+     +    G 
Sbjct: 278 IANPPFSLKEWGREV------WENDPWGRAQYGMPPDSYGDYAFVQHMI--ASMAQGRGS 329

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+VL    LF     S E +IR  LL  DLIEA++ L  +LF+ T +A  + IL  +K
Sbjct: 330 RMAVVLPQGALFRK---SAEGKIREVLLREDLIEAVIGLAPNLFYGTGLAGCVVILRRKK 386

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             ER+ KV +I+A+ L+     +G+ +  ++     QI+  + + E+
Sbjct: 387 PAERKNKVLIIDASSLF----RKGRAQNFLDSKHGEQIVKWFQAFED 429


>gi|163801600|ref|ZP_02195498.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174517|gb|EDP59319.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 499

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 42/330 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L   +L
Sbjct: 126 LLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMVNIL 185

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDP CGTGG L + ++HV + G     P +L   GQE    T
Sbjct: 186 ----------DPQANESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKNLTT 232

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    + +   E          I +G TL    F      + F   ++NPPF  K+W 
Sbjct: 233 EAIARMNLFLHGQED-------FEIVRGDTLRDPKFLQNDQLENFDCVIANPPFSLKEWG 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D         +   GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 286 HDY------WTSDPYGRASFGLAPKTNGDFAWVQHMFASL----NDEGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E +IR  LL+ + I A++ + ++LF+ T I   + +L   + EE +  V ++N
Sbjct: 336 RGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKARPEEHKDHVLIVN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           A +++T    +G+ +  +++ Q  +I DIY
Sbjct: 393 AEEIFT----KGRAQNTLSEPQADEIYDIY 418


>gi|257060099|ref|YP_003137987.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
 gi|256590265|gb|ACV01152.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
          Length = 522

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 225/491 (45%), Gaps = 66/491 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAV----RE 57
           + S  SL ++IW  A  + G  +   +   ILP    +RL C +   E  R AV    RE
Sbjct: 13  SNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRL-CDVFDDELNRIAVKVKTRE 71

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAI 114
           K       + +L  F         + + +S+    S      L  Y   IA  +   K I
Sbjct: 72  KAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKGI 131

Query: 115 FEDFDFSSTIA--------RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +  DF++TI         RL  + L+ KI +   G++   D  PD ++   YE+LIR+F
Sbjct: 132 IDRVDFNATIHGERELDDDRL--SNLIEKISEKRLGLK---DVEPD-IIGRSYEYLIRKF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +E  + A +F TP++V  +  A ++ P        PGM   +YDP CG+ G L      
Sbjct: 186 -AESGKSAGEFYTPKEV-GIIMAKIMQP-------QPGM--AIYDPCCGSAGLLIKCQLV 234

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLS 283
           +A+          L  +GQE   +T A+    M+I  +E       S      +QG  L+
Sbjct: 235 LAESQEKGGKYAPLQLYGQEYTGDTWAMANMNMIIHDMEGKIEIGDSFRFPKFKQGGNLA 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMH 341
           +       F   ++NP + + W       E+++   E GRF  G G P  S     ++ H
Sbjct: 295 Q-------FDRVVANPMWNQNW-----FTEQDYDGDEWGRFPQGAGFPG-SKADWGWVQH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L+  P+G  ++AIVL +     G   +    E E+R+W +E D+IE ++ LP +LF
Sbjct: 342 IWASLQ--PHG--QSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLF 397

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+    + IL+  K+E R+ ++ LINA+  +     +G  +  I+D+   +I+  +++
Sbjct: 398 YNTSAPGIILILNKAKSEARKHQLLLINASLEFA----KGDPKNYISDEGINRIVTAFLN 453

Query: 459 -RENGKFSRML 468
             E  KFSR++
Sbjct: 454 WEEQDKFSRIV 464


>gi|261368369|ref|ZP_05981252.1| type I restriction-modification system, M subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282569612|gb|EFB75147.1| type I restriction-modification system, M subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 509

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 171/368 (46%), Gaps = 56/368 (15%)

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLI 163
           S   + +F   DF+S +      EK   L  + ++F  ++L P  +    ++ + YE++I
Sbjct: 107 SGKLRNVFRAIDFNSQVDFGEVKEKNATLRNLLEDFHKLDLRPSQLGSADIIGDAYEYMI 166

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             F S+  +   +F TP  V  L  +L+           P     +YDPTCG+GG L  A
Sbjct: 167 AMFASDAGKKGGEFFTPSQVSELVASLV----------KPKENDRIYDPTCGSGGLLLKA 216

Query: 224 MNHVADCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                    + K+P   V  +GQEL  +T A+C   M +  ++ D R      I QG TL
Sbjct: 217 ---------YKKVPSGKVAIYGQELNAQTWALCTMNMFLHGVD-DAR------IWQGDTL 260

Query: 283 S--KDLFTGK--RFHYCLSNPPFG-KKWEK------DKDAVEKEHKNGELG---RFGPGL 328
           S  +++   K  +F   ++NPPF   KW+       + D+  K+    EL    RF  G+
Sbjct: 261 SNPQNIENDKLMKFQVVVANPPFSLDKWDSGFLTDVEADSKGKKKMTAELDPYHRFDWGV 320

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  S G   F++H+   L+      GR AIVL    LF G   + E +IRR L+E +L++
Sbjct: 321 PPTSKGDYAFVLHMLASLDAE---NGRMAIVLPHGVLFRG---ASEGKIRRQLVEMNLLD 374

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP +LF+ T I   + +    + +     V  I+A+        +GK + I+ D  
Sbjct: 375 AVIGLPANLFYGTGIPACILVFKKNRPQR---DVLFIDASG--EGNFEKGKNQNILRDTD 429

Query: 449 RRQILDIY 456
             +I+  Y
Sbjct: 430 IARIVSTY 437


>gi|222152467|ref|YP_002561642.1| type I restriction-modification system M protein [Streptococcus
           uberis 0140J]
 gi|222113278|emb|CAR40812.1| type I restriction-modification system M protein [Streptococcus
           uberis 0140J]
          Length = 516

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 212/496 (42%), Gaps = 86/496 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-- 72
           IWK A+D+ G     DF + IL     R +        S   + Y+  G  NI+ E+   
Sbjct: 14  IWKIADDVRGAVDGWDFKQYILGILFYRFI--------SENFKNYMEAGDPNINYENVPE 65

Query: 73  -----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------------ 109
                      VK  GY       +S + + S  T +NL + + +  D            
Sbjct: 66  SLITDDIKDDAVKTKGYFIMPNQLFS-NIVKSARTNDNLNTDLKAIFDAIQASAIGYESE 124

Query: 110 -NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162
            + K +F+D D +S   RL     EK   L  I +  + +   H +     +  + YE+L
Sbjct: 125 NDIKGLFDDVDTTSN--RLGNTVPEKNKRLADILEGIASLNFGHFEDNKIDLFGDAYEYL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + S   +   +F TP++V  L   +++     L +     I  +YDP CG+G  L  
Sbjct: 183 ISNYASNAGKSGGEFFTPQNVSKLLAKIVM-----LGRSESNKINKIYDPACGSGSLLLQ 237

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A        + H I      +GQE+   T+ +    M +  +  D       NIQ+G TL
Sbjct: 238 AQKQF----TEHVIEDGF--YGQEINLTTYNLARMNMFLHNINYDKF-----NIQRGDTL 286

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +       K F   +SNPP+   W  KD   +  + +    G   P     S     F+M
Sbjct: 287 TDPKHGNDKPFDAIVSNPPYSINWIGKDDPTLINDDRFAPAGVLAPK----SKADFAFIM 342

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +  GRAAIV+    L+ G A   E +IR++L++N+ +EAI+ LP +LFF 
Sbjct: 343 HSLSYL----SAQGRAAIVVFPGILYRGGA---EQKIRKYLVDNNFVEAIIQLPNNLFFG 395

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQRRQILDIYV 457
           T+IAT + +L+  KT          N   L+     E KK     ++ ++   +IL+   
Sbjct: 396 TSIATCILVLAKNKT----------NTDTLFIDASAEFKKATNNNVLTEENIDKILESIE 445

Query: 458 SRENGK-FSRMLDYRT 472
           ++EN   F++++ Y T
Sbjct: 446 NKENKDYFAQVVPYET 461


>gi|261840207|gb|ACX99972.1| type I R-M system M protein [Helicobacter pylori 52]
          Length = 817

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 205/474 (43%), Gaps = 64/474 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L N +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYNSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKARN-N 48

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
            +S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+     
Sbjct: 49  TDSEIEVPKGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
           +GQE +  T A+C   M+   L +    D++K     STLS  LFT      K F Y ++
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPLFTTENGMLKTFDYVVA 266

Query: 298 NPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G
Sbjct: 267 NPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTG 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L    
Sbjct: 323 KGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKEN 379

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
              R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 380 ARARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 429


>gi|148544099|ref|YP_001271469.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|184153471|ref|YP_001841812.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM
           1112]
 gi|227364523|ref|ZP_03848586.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri MM2-3]
 gi|325682361|ref|ZP_08161878.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus reuteri MM4-1A]
 gi|148531133|gb|ABQ83132.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|183224815|dbj|BAG25332.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM
           1112]
 gi|227070450|gb|EEI08810.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri MM2-3]
 gi|324978200|gb|EGC15150.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus reuteri MM4-1A]
          Length = 510

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 204/457 (44%), Gaps = 52/457 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           ++ + +WK A+ L G    +++  V+L    L+    + E  R  + +        + D+
Sbjct: 9   NIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFEERRQELLKTEYPEDAEDPDM 68

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
               +   V   + +   E++  T       ++  + I   +D+ + I      S  + +
Sbjct: 69  YLENNIFWVPQEARWAKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASPDLDK 128

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                 L ++    S I++      D+ V+  +YE+ +  F S+  +   +F TPR +V 
Sbjct: 129 TR----LGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPRSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILVPHG 244
           +   ++           P   R +YDP CG+GG    +   V     HH+     L   G
Sbjct: 185 ILVEMI----------EPYKGR-IYDPCCGSGGMFVQSEEFV----RHHQGELKDLHVFG 229

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           +E  P T  +    + IR ++SD          QG T + DL  G RF+Y L+NPPF  K
Sbjct: 230 EESNPTTWKLAKMNLAIRGIDSDL------GPHQGDTFTNDLHKGVRFNYILANPPFNIK 283

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W  +K          E  R+  G+P   + +  ++ H+ +KL   P+G  +A  VL++ 
Sbjct: 284 NWGGEKLQ--------EDARWKYGVPPTGNANYAWIEHIISKL--APDG--KAGFVLANG 331

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-NRKTEE---RR 419
            L    +   E  IR+ +LE+D I+AIVALP  +F+ T I   LW +  N+++E+   R+
Sbjct: 332 AL--STSNKEEFAIRKAILEDDKIDAIVALPEKMFYSTGIPVSLWFVDMNKESEDERSRK 389

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           G+   I+A +L   I    +  R  NDD  +++ D Y
Sbjct: 390 GETLFIDARNLGEMI---DRTHRAFNDDDIKKVADTY 423


>gi|28377765|ref|NP_784657.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus plantarum WCFS1]
 gi|28270598|emb|CAD63502.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus plantarum WCFS1]
          Length = 528

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 221/481 (45%), Gaps = 75/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFGGSN- 66
           A L   +W  A DL G+   +++   IL     R L   +E      +++  + F  +  
Sbjct: 11  AELQKRLWAVANDLRGNMDASEYRNYILGLIFYRFLSEKVENYANELLQDDDVDFADAEQ 70

Query: 67  ------------IDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLE-SYIASF 107
                       ID+  F     Y F       N  ++ +  L   N  N ++ S +   
Sbjct: 71  DADLMQDLKDEVIDVLGFFIEPRYLFTTMVKKINAGDFDVEML--QNAINEVQNSTLGKE 128

Query: 108 SDNA-KAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S+N  K +FED D  S     T+A+  ++ L+ K+  + S I+     +   ++ + YE+
Sbjct: 129 SENDFKGLFEDLDLQSSRLGNTVAK--RSELIAKVILSLSNIDFGEQDIKIDILGDAYEY 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F +   + A +F TP+ V  L   ++    D L        +T+YDPT G+G  L 
Sbjct: 187 LIGQFAASAGKKAGEFYTPQQVSKLLARIVTAGKDRL--------KTVYDPTMGSGSLLL 238

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              N+ A  G++         +GQE+   T+ +    +L+  + S  R DL    +QG T
Sbjct: 239 QLGNY-ATIGNY---------YGQEINGTTYNLARMNLLMHEV-SYNRFDL----RQGDT 283

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L +D F    F   ++NPP+  KW  D D ++ E       ++G   PK S     F+ H
Sbjct: 284 LEEDHFDDLTFDAVVANPPYSAKWNPD-DKLDDER----FRKYGKTAPK-SKADFAFVEH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFR 400
           +   L    N  G  A+VL    LF G A   E +IR++++E+D +++A++ LP +LF+ 
Sbjct: 338 MLYHL----NNEGTMAVVLPHGVLFRGAA---EGKIRQYMIEHDNVLDAVIGLPANLFYG 390

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ER+  +  I+A++ +     +GK +  + D+   +IL+    RE
Sbjct: 391 TSIPTVVLVF--KKGRERQ-DIFFIDASNDF----EKGKNQNNLTDENVDKILETLEKRE 443

Query: 461 N 461
           +
Sbjct: 444 D 444


>gi|145631522|ref|ZP_01787290.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982867|gb|EDJ90384.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 283

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 34/281 (12%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++ 
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTESQ 242

Query: 225 NHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           N +      S  +    +   G+E   ET+A+C + M+I+R
Sbjct: 243 NFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKR 283


>gi|27380125|ref|NP_771654.1| type I restriction-modification system specificity subunit
           [Bradyrhizobium japonicum USDA 110]
 gi|27353279|dbj|BAC50279.1| type I restriction-modification system specificity subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 879

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 205/462 (44%), Gaps = 57/462 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV 75
           +K  ++L G+   +++ + I     L+R     +  R  +     A G     LE+ ++ 
Sbjct: 14  FKACDELRGNMDASEYKEYIFGVLFLKRCSDLFDQQREKLTVNLRARGLDGQRLEALLES 73

Query: 76  AG-YSFYNTSEYSLSTLG--STNTRNNLESYIASF----SDNAKAIFEDFDFSSTIA-RL 127
              Y+FY   +   +T+     +  N L + +        D  + + E  +F+  I  R 
Sbjct: 74  RDQYTFYVPPQARWATVRHLKEDVGNGLNAALGELERHNKDQLEDVLEHINFNRKIGQRT 133

Query: 128 EKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                L    + F  I L  +    PD ++   YE+LI+ F     + A +F TP DVV 
Sbjct: 134 LSDDTLVDFLQVFENIPLRDENFEFPD-LLGAAYEYLIKYFADSAGKKAGEFYTPADVVR 192

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
               ++ DP        PGM  ++YDPT G+GG L  + ++V D G     P  L   GQ
Sbjct: 193 TMVEIV-DP-------QPGM--SIYDPTVGSGGMLIQSRDYVRDNGGD---PNNLSLAGQ 239

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPP 300
           E +  T ++C   M++  ++S        +I+Q +TL+K    G      RF   L+NPP
Sbjct: 240 ESQGTTWSICRMNMILHDIQS-------ADIRQENTLTKPQHRGDDGELIRFDRVLANPP 292

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F + +     A + E K    GRF   +P K     ++F+ H+   L+     GGR A V
Sbjct: 293 FSQSYS----AKDMEFK----GRFVKWMPEKGKKADLMFVQHMLAVLK----SGGRMATV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF G     E + R   ++   ++A++ LP  LF+ T I   + ++S  + + R+
Sbjct: 341 MPHGVLFRG---GEEKDAREHFIKQGWLDAVIGLPPSLFYGTGIPACILVMSKERADLRK 397

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             V  INA   +     EGK +  +  +   +I+D+Y  R++
Sbjct: 398 -DVLFINADREY----REGKAQNFLRPEDMSKIVDVYRRRQD 434


>gi|15646013|ref|NP_208194.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2314576|gb|AAD08446.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 817

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 151/626 (24%), Positives = 262/626 (41%), Gaps = 97/626 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKARNNN 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  +D    K + +  DF+     
Sbjct: 50  F-SEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIADQNELKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMMDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L++ LL    DA  ++     +++YDP CG+G  L  A +   + G        L  
Sbjct: 166 VSLLSSLLL--GIDANTRQD----KSIYDPACGSGSLLLKASSLAGEKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
           +GQE +  T A+C   M+   L +    D++K     STLS  LFT      K F Y ++
Sbjct: 212 YGQEKDISTTALCRMNMI---LHNSATADIAKG--GSSTLSNPLFTTENGMLKTFDYVVA 266

Query: 298 NPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G
Sbjct: 267 NPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTG 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L    
Sbjct: 323 KGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKEN 379

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
              R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+      
Sbjct: 380 ARARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNAYKEIPYYSKMVSLEEIS 435

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL------------DILKPM 522
                +  P  ++        A+ E++     L   H++ +L             + K +
Sbjct: 436 ANDYNLNIPRYIA--------AKPESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKEL 487

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRA 571
              ++     ES+     +    K L +++S  ++F  + +NAF R D         P  
Sbjct: 488 KNTLFKKSDKESYYALKTECENIKELIIQSSEFQTFHASVLNAFDRLDLFETFDHLEPGF 547

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLE 597
           +P T +  E +    L E+E +  L+
Sbjct: 548 NPKTLI--ESVCSKVLKEFEKIEILD 571


>gi|303242501|ref|ZP_07328981.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302589969|gb|EFL59737.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 510

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 169/365 (46%), Gaps = 52/365 (14%)

Query: 112 KAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167
           + +F++ DF+S        E+  +L  + ++F  ++L P   V + V+ N YE++I  F 
Sbjct: 116 RGVFKNIDFNSEAVLGNTKERNAMLKHLLEDFKDLDLRPSRLVGEDVIGNAYEYMIANFA 175

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  +   +F TP +V  L + L+           P     +YDPTCG+G  L  A N +
Sbjct: 176 SDAGKKGGEFFTPSEVSELLSRLV----------KPKENDRIYDPTCGSGSLLIKAFNKI 225

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +          +GQE   +TH++C   M +  ++ D R      I  G TLS  L 
Sbjct: 226 PSGKAQ--------IYGQERNGQTHSLCRMNMFLHSID-DAR------IAWGDTLSNPLH 270

Query: 288 TGK----RFHYCLSNPPFG-KKWEKD--KDAVEKEHKNGE----LGRFGPGLPKISDGSM 336
                  +F   ++NPPF   KW      +  +KE K  E      RF  G+P  S G  
Sbjct: 271 LENDKLMKFQVVVANPPFSLDKWAMGFVGEGNDKEFKMEEGLDPYKRFSWGVPPSSKGDY 330

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H+ + L      GGR  +VL    LF G   + E +IR+ +++ +L++A++ LP++
Sbjct: 331 AFVLHMLHSLA----EGGRMGVVLPHGVLFRG---ASEGKIRQKIIDMNLLDAVIGLPSN 383

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T I   + +    +    R  V  I+A+    +   +GK +  + +   ++I D Y
Sbjct: 384 LFFGTGIPACILVFRQNRD---RDDVLFIDAS--GDNYYEKGKNQNKLREADIKRIEDAY 438

Query: 457 VSREN 461
              EN
Sbjct: 439 EKYEN 443


>gi|149915111|ref|ZP_01903639.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b]
 gi|149810832|gb|EDM70671.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b]
          Length = 508

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 156/326 (47%), Gaps = 44/326 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           ++  + + F+ +ELH  +    ++  IYE+ I  F S   +   +F TP+ VV +   +L
Sbjct: 124 IVTGLIEMFTNLELHGTSADFDLIGRIYEYFIGEFASSEGKRGGEFYTPKSVVSVLVEML 183

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
            +P              +YDP CGTGGF   +   +    +H      +  +GQE    T
Sbjct: 184 -EPTSG----------RVYDPCCGTGGFFVQSEKFIE---AHQGRIGDIAVYGQERNHTT 229

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKD 310
             +    + IR +  D R +      Q  TL ++ F  +RF + L+NPPF    W  D D
Sbjct: 230 FRLARMNLAIRGILGDIRWN------QEGTLKRNAFPDERFDFILANPPFNISDW--DSD 281

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            + ++H      R+  G P + + +  ++ H+ + L    +  G A +V+++  + + + 
Sbjct: 282 QLREDH------RWKFGTPPVGNANFAWMAHVHHHL----SANGIAGVVMANGSMSSMQ- 330

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---------EERRGK 421
            SGE EIR+ +++ D ++AIVALP  LFF T I   LWIL+  K+          +RR +
Sbjct: 331 -SGEGEIRKAMVQQDAVDAIVALPGQLFFGTQIPACLWILAKDKSNGQAAGRTLRDRRQE 389

Query: 422 VQLINATDLWTSIRNEGKKRRIINDD 447
           V  I+A  +   I    K++++  D+
Sbjct: 390 VLFIDARKMGALIPGSRKQKKLSEDE 415


>gi|298695076|gb|ADI98298.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus subsp. aureus ED133]
          Length = 518

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 208/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL GD   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGDMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFYIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y S+E
Sbjct: 441 TYKSKE 446


>gi|328950634|ref|YP_004367969.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450958|gb|AEB11859.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Marinithermus hydrothermalis DSM 14884]
          Length = 524

 Score =  124 bits (310), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 197/457 (43%), Gaps = 61/457 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W+ A  + G      F   ILP   L+RL    E     + E+Y     +   +
Sbjct: 7   TLETWLWEAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDELERLAEEYGDRETAEQII 66

Query: 70  E------SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFE 116
           E      +  +  G   +   E +       + R  L  +       +A  +   + + +
Sbjct: 67  EDERAGGTISRGRGSVRFYIPENARWPRIRAHGRAGLGQFLTDAVRAVARENPRLQGVID 126

Query: 117 DFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             DF++T A  R+     L ++    S   L    V   ++   YE+L+R+F     + A
Sbjct: 127 LVDFNATAAGQRIVPDEYLARLVDVLSHHRLGLQDVEPDILGRAYEYLLRKFAEGQGQSA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-----NHVAD 229
            +F TPR+V  L  A +L+P+       PGM  T+YDP CG+GG L          H   
Sbjct: 187 GEFYTPREVAVL-MARILEPE-------PGM--TVYDPACGSGGLLIKCHLRLLETHGEQ 236

Query: 230 CGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              H  +PP   P   +GQE+ P T A+     +I  +E+D        I+ G T+    
Sbjct: 237 QNGHRCLPPEHAPLQLYGQEINPATFAMARMNAVIHDMEAD--------IRLGDTMRNPA 288

Query: 287 F---TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           F   +G+  RF   ++NP + + +  +       ++N    RF  G P  S     +L H
Sbjct: 289 FKDASGRLMRFDLVVANPMWNQIFPTEV------YENDPYERFAFGTPPASTADWGWLQH 342

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L    +  GR A+VL +  +  G    G   E +IR+  +E DLIEA+V LP +LF
Sbjct: 343 MLASL----SDTGRMAVVLDTGAVSRGSGTQGSNRERDIRKAFVEADLIEAVVLLPENLF 398

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           + T     + +++ RK     G++ LINA+ L+   R
Sbjct: 399 YNTTAPGIILVVNRRKRHP--GEILLINASKLFAKGR 433


>gi|328951823|ref|YP_004369157.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452147|gb|AEB07976.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
          Length = 499

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 205/464 (44%), Gaps = 50/464 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKY 59
           M   T S + L + +W+ A  L G     DF   + P    +RL +   E  + A++E  
Sbjct: 1   MDNSTLSLSQLESHLWEAANILRGPVDAADFKTYVFPLLFFKRLSDVYDEEYQEALKE-- 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIF 115
               G + +   F +   +       +      +TN    L++ +        +    IF
Sbjct: 59  ---AGGDEEYARFPQNYRFQIPEDCHWRDVRAVATNVGQALQTAMRCIETANPETLYGIF 115

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            D  +++   RL  A LL  + ++FS I L        ++   YE+LI++F    ++ A 
Sbjct: 116 GDAQWTNK-DRLSDA-LLRDLIEHFSKIPLGNAVAQADILGQSYEYLIKKFADLTNKKAG 173

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV L   +L DP +           ++YDP CGTGG L +A++HV +   HH 
Sbjct: 174 EFYTPRAVVRLMVNIL-DPQEG---------ESIYDPACGTGGMLLEAIHHVRE---HHG 220

Query: 236 IPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               L     GQE    T A+    +++    +D +   +  ++Q +  S D      + 
Sbjct: 221 DVRTLWGRLFGQEKNLTTSAIARMNLILHG-AADFKIIRADTLRQPAFFSGDNLA--TYD 277

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             ++NPPF  +KW       E+   +   GR   G+P    G   ++ H+   +  P  G
Sbjct: 278 CVIANPPFSLEKWG------EEVWTSDPFGRNFAGMPPAKSGDFAWVQHMIKSMA-PKTG 330

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             R A+VL    LF  R G+ E +IR+ LL  DL+EA++ L  +LF+ T +A  + I   
Sbjct: 331 --RMAVVLPHGVLF--RMGA-EGKIRQKLLNMDLLEAVIGLGPNLFYGTGLAACILIFRL 385

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           RK  E R KV +I+A+        E KK R  N+     +  IY
Sbjct: 386 RKPPEHRNKVLIIDAS-------QEFKKGRAQNELLPDHVAHIY 422


>gi|313107803|ref|ZP_07793977.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042
           [Pseudomonas aeruginosa 39016]
 gi|310880479|gb|EFQ39073.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042
           [Pseudomonas aeruginosa 39016]
          Length = 1005

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 205/468 (43%), Gaps = 56/468 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREK 58
           M++   + + L + +W++A  L G     DF   I P    +R+ C +  E  +  V E 
Sbjct: 1   MSDQQITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRI-CDVWDEEFQEIVDES 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAI 114
                  +  L  F +   +   +   +      S N    L+  +        D    +
Sbjct: 60  ------GDEQLAWFPESHRFQIPDYCHWEQVREKSINVGAALQWAMREIERANPDTLYGV 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   RL    LL  + ++FS + L    V   ++ + YE+LI++F    ++ A
Sbjct: 114 FGDAQWSNK-DRLSDP-LLKDLIEHFSKLPLGNKNVSSDLLGDAYEYLIKKFADATNKKA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TPR VV L   +L DP +           ++YDP CGTGG L  A+ HV +  G  
Sbjct: 172 GEFYTPRSVVRLMIDML-DPKEG---------ESIYDPACGTGGMLLAAVQHVKELHGDV 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKR- 291
            ++   L  +GQE    T ++    + +  +E          I++G TL +   F G R 
Sbjct: 222 KRLWGKL--YGQEKNLTTSSIARMNLFLHGIED-------FKIERGDTLRNPAFFDGDRL 272

Query: 292 --FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             F   ++NPPF  +KW +D         N   GR   GLP  S G   ++ H+   +  
Sbjct: 273 ATFDCVIANPPFSLEKWGEDL------WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMAA 326

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A+VL    LF  R G  E  IR+ LLE DL+EA++ L  +LF+ T +A  + 
Sbjct: 327 VT---GRMAVVLPQGALF--RKGV-EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIL 380

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +L N K  +   KV + +A+ L+      G+ +  +      +IL  Y
Sbjct: 381 VLRNCKPAQFEKKVLIADASRLF----RRGRAQNFLEPKHAAEILGWY 424



 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 197/458 (43%), Gaps = 59/458 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W  A  L G     D+ + I P    +R+    +       E   A   SN DL 
Sbjct: 511 LESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWD------EEYQAALVDSNGDLS 564

Query: 71  SFVKVAGYSF-------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                  + F       +N    +   +G+   R  + +  ++  D    IF D  +++ 
Sbjct: 565 YAQFAENHRFQIPEAAHWNDVRQTPRNVGAAIQRA-MRAIESANPDMLDGIFGDAPWTNR 623

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T R V
Sbjct: 624 -DRLPDE-TLKNLIEHFSTKTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTV 681

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           VHL T LL          +P +  ++YDPTCGTGG L  A++ V   G  ++    L  +
Sbjct: 682 VHLMTQLL----------APQVGESIYDPTCGTGGMLISALDEVKRSGGEYR---TLKLY 728

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE    T ++    + +  +E          I +G TL+          ++F   L+NP
Sbjct: 729 GQERNLITSSIARMNLFLHGVE-------DFEIVRGDTLADPKHIEDDRLRQFDVILANP 781

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+  K+W ++  + +K       GR   G P        F  H+   L    +  GR A+
Sbjct: 782 PYSIKQWNREAWSSDK------WGRNSLGTPPQGRADYAFQQHILTSL----SAKGRCAV 831

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT +R
Sbjct: 832 LWPHGVLFRNE----EQAMRAQMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRQKTSDR 887

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            GKV  I+A +  T  R +      +  + +++IL  Y
Sbjct: 888 HGKVIFIDAVNEVTRERAQS----FLKTEHQQRILSAY 921


>gi|217033077|ref|ZP_03438543.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128]
 gi|298737196|ref|YP_003729726.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|216945198|gb|EEC23885.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128]
 gi|298356390|emb|CBI67262.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 815

 Score =  123 bits (309), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 206/474 (43%), Gaps = 64/474 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKARNNN 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 50  F-SEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GENKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
           +GQE +  T A+C   M+   L +    D++K     STLS  LFT      K F Y ++
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPLFTTENGMLKTFDYVVA 266

Query: 298 NPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G
Sbjct: 267 NPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTG 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + IL    
Sbjct: 323 KGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIILDKEN 379

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
              R+G V +I+A+      + +G K R+ + D ++ I      +E   +S+M+
Sbjct: 380 AHARKG-VFMIDAS---KDFKKDGNKNRLRDQDVQKMIDTFNAYKEIPYYSKMV 429


>gi|254190414|ref|ZP_04896922.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938090|gb|EDO93760.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 500

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 207/463 (44%), Gaps = 54/463 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKY 59
           T +   L + +W++A  L G     DF   I P    +R+     E   E       E+ 
Sbjct: 7   TVTLGQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDETGDEQL 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             F  S+       ++     +N      S +G+   R   E   A+  D    +F D  
Sbjct: 67  AWFPESH-----RFQIPEDCHWNDVRSKASNVGAALQRAMREIEKAN-PDTLYGVFGDAQ 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +S+   RL  A LL  + ++FS + L  D V   V+ + YE+LI++F    ++ A +F T
Sbjct: 121 WSNK-ERLSDA-LLKDLIEHFSVLPLGNDNVNSDVLGDAYEYLIKKFADATNKKAGEFYT 178

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           PR VV L   +L DP +A          T+YDP CGTGG L  A+ HV +  G   ++  
Sbjct: 179 PRSVVRLMIDML-DPKEA---------ETIYDPACGTGGMLLAAVQHVKEMHGDVKRLWG 228

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTG---KRFHY 294
            L  +GQE    T ++    + +  +E          + +G TL +   F G     F  
Sbjct: 229 KL--YGQEKNLTTSSIARMNLFLHGIED-------FQVLRGDTLRNPAFFEGDWLATFDC 279

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF  +KW +D         N   GR   GLP  S G   ++ H+   +    +  
Sbjct: 280 VIANPPFSLEKWGEDL------WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMA---DLT 330

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A+VL    LF  R G  E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L  R
Sbjct: 331 GRMAVVLPQGALF--RKGV-EGSIRQKLLELDLVEAVIGLGPNLFYGTGLAACILVLRKR 387

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           K  + + KV + +A+ L+      G+ +  +  +   +IL  Y
Sbjct: 388 KPAKHKKKVLIADASRLF----RRGRAQNYLEPEHAAEILGWY 426


>gi|301166115|emb|CBW25690.1| putative type I restriction enzyme modification protein
           [Bacteriovorax marinus SJ]
          Length = 580

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 150/332 (45%), Gaps = 58/332 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI  F +   + A +F TP +V  L  A+L+ P+             +YDPT
Sbjct: 162 VIGNAYEYLIANFAAGAGKKAGEFYTPSEVSQL-LAMLVKPEKG---------SRIYDPT 211

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +   G +         +GQE+   T A+    M +   +        
Sbjct: 212 CGSGSLLIRCAEQLTKNGIND-----FQIYGQEITGATWALAKMNMFLHGFDRSV----- 261

Query: 274 KNIQQGSTL-------SKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
             I+ G T+       + +L T   F   ++NPPF   KW  D      E K+   GRF 
Sbjct: 262 --IENGDTIRNPIHLENDELMT---FDVVVANPPFSLDKWGID------EAKSDSYGRFN 310

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P  S G + F+ H+   L    N  GR A+VL    LF G   S E  IR  L+ +D
Sbjct: 311 YGIPPKSYGELAFVQHMVASL----NENGRCAVVLPHGVLFRG---SAEKRIREGLINDD 363

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+EA++ LP+ LFF T I   + + + +K+ +R+ KV  IN  DL      EGK +  + 
Sbjct: 364 LLEAVIGLPSGLFFGTGIPASIMVFNKKKSADRKDKVLFING-DLEYQ---EGKNQNKLR 419

Query: 446 DDQRRQILDIYVS--------RENGKFSRMLD 469
           D     I+  YV          E+  +SR+++
Sbjct: 420 DQDINHIVANYVEFKTEGLYRHEDKHYSRVVE 451


>gi|297618846|ref|YP_003706951.1| type I restriction-modification system, M subunit [Methanococcus
           voltae A3]
 gi|297377823|gb|ADI35978.1| type I restriction-modification system, M subunit [Methanococcus
           voltae A3]
          Length = 514

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 211/473 (44%), Gaps = 71/473 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGGSNIDLESFV 73
           +W  A DL G+ +H +F   IL     R L   LE   S + +E  + +  +  D E   
Sbjct: 18  LWSIANDLRGNMEHNEFKNYILGVIFYRYLSEKLENRVSNLLKEDNITYAEAWNDEEYTE 77

Query: 74  KVAGY-----SFYNTSEYSLSTLGS--TNTRN----NLESYIASFSDNA---------KA 113
           ++         +Y   EY  ST+ +  TNT++     L   I S +++          + 
Sbjct: 78  ELKEELLDEIGYYIAPEYLFSTMVNKITNTKDFTIEELSKAIGSINESTLGTKSQDAFEN 137

Query: 114 IFEDFDFSSTI--ARLE-KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSE 169
           +F+D D  S     ++E ++ L+ K+    + I+  H D+  D V+ + YE LI +F S 
Sbjct: 138 LFDDLDLESNKLGQKVEARSKLMAKVLSKIAEIDFSHEDSEID-VLGDAYEFLISQFASS 196

Query: 170 VSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             + A +F TP+ V   LA  + +   D         ++++YDPTCG+G  L   ++  A
Sbjct: 197 AGKKAGEFYTPQQVSKILAKIVTMGKKD---------LKSVYDPTCGSGSLLL-RISKEA 246

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D             +GQE+   T+ +    ML+  +  D       +IQ    L      
Sbjct: 247 DVRKF---------YGQEVISTTYNLARMNMLLHNVSYDKF-----DIQNDDVLENPKHL 292

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           GK+F   ++NPP+ + W  D      + +  E G+  P     S     F+ H+   L  
Sbjct: 293 GKKFDAVVANPPYSQTW--DNSMHNDDDRFSEYGKMAPN----SKADFAFVQHMIYHLA- 345

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYL 407
                G  A+VL    LF G A   E  IR++L+ E + ++A++ LP+++FF T I T +
Sbjct: 346 ---DKGVMAVVLPHGVLFRGNA---EGTIRKYLIKEKNYLDAVIGLPSNIFFGTGIPTTI 399

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            +   +K  E    V  I+A++ +      GK + I+ D+   +I+D Y  R+
Sbjct: 400 LVF--KKCRETGDNVLFIDASNDYEP----GKNQNILRDEDVEKIIDTYKERK 446


>gi|187930243|ref|YP_001900730.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|187727133|gb|ACD28298.1| N-6 DNA methylase [Ralstonia pickettii 12J]
          Length = 503

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 199/456 (43%), Gaps = 47/456 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           S   L +++W+ A  L G     D+ + I P    +R+     E  +SA+ E       +
Sbjct: 5   SQQELESYLWRAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYQSALVESDGDLSYA 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                   ++     +N    +   +GS   +  + +   +  D    IF D  +++   
Sbjct: 65  QFAENHRFQIPEGVHWNDVRQTPKNVGSA-IQKAMRAIELANPDMLDGIFGDASWTNR-E 122

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T R VVH
Sbjct: 123 RLPDE-TLKDLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVVH 181

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L  +GQ
Sbjct: 182 LMTQLL----------APLAGESIYDPTCGTGGMLISALDEVKRSGGEYR---TLTLYGQ 228

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR---FHYCLSNPPF 301
           E    T ++    + +  +       +   I +G TL++     G R   F   L+NPP+
Sbjct: 229 ERNLITSSIARMNLFLHGV-------VDFEIIRGDTLAEPKHIEGDRLRQFDVILANPPY 281

Query: 302 G-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             K+W+++  + +K       GR   G P        F  H+   L       GR A++ 
Sbjct: 282 SIKQWDREAWSSDK------WGRNTLGTPPQGRADYAFHQHILTSLTTK----GRCAVLW 331

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + RKT ER+G
Sbjct: 332 PHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCVVICNRRKTSERKG 387

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           KV  I+A +  T  R +      +  + +R+IL  Y
Sbjct: 388 KVIFIDAVNEVTRERAQS----FLKPEHQRRILAAY 419


>gi|227544655|ref|ZP_03974704.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri CF48-3A]
 gi|300909428|ref|ZP_07126889.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri SD2112]
 gi|227185380|gb|EEI65451.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri CF48-3A]
 gi|300893293|gb|EFK86652.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri SD2112]
          Length = 512

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 204/455 (44%), Gaps = 48/455 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+ + +WK A+ L G    +++  V+L    L+ +  + E   + + +        + D+
Sbjct: 11  SIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLKSDYPEDAEDPDM 70

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              E+   V   + +   + S  T       ++    I   +D+ + +    +++S    
Sbjct: 71  YLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLRGVLSK-NYASPDLD 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             + G +  +  + S  + H       ++  +YE+ +  F S+  +   +F TPR +V  
Sbjct: 130 KARLGEVVDLISDISLGDKHAKQ--SDILGRVYEYFLNEFASQEGKKGGEFYTPRSIVRT 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P   R +YDP CG+GG    +   V +   H      L  +G+E
Sbjct: 188 LVEMI----------EPYKGR-IYDPCCGSGGMFVQSDKFVQE---HQGKIGDLSVYGEE 233

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW 305
             P T  +    + IR +      D +    QG T + DL  G+RF + L+NPPF  K W
Sbjct: 234 SNPTTWKLAKMNLAIRGI------DNNLGPHQGDTFTNDLHKGERFDFILANPPFNVKNW 287

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             DK          E  R+  G+P + + +  ++ H+ +KL   P+G  +A  VL++  L
Sbjct: 288 NGDKLR--------EDARWQYGVPPVGNANYAWIEHIISKL--APDG--KAGFVLANGAL 335

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-NRKTE---ERRGK 421
               + + E +IR+ +LE+D I+AIVALP  +F+ T I   LW +  N+++E   +R+G+
Sbjct: 336 --STSTTAEHDIRKAILEDDKIDAIVALPDKMFYSTGIPVSLWFVDMNKESENERDRKGE 393

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              I+A DL   I    +  R  + +  +++ D Y
Sbjct: 394 TLFIDARDLGEMI---DRTHRAFSKEDIKKVADTY 425


>gi|299065074|emb|CBJ36237.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum CMR15]
          Length = 536

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 222/512 (43%), Gaps = 75/512 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L +++W++A  L G    +DF   I     L+R     E   S +         S  + 
Sbjct: 9   TLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEERVSQLMANEDL---SQAEA 65

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA---- 125
           ++ V     +F  T+ +   T   T T N  E+   +F D  +A  +  D    +     
Sbjct: 66  DAEVCEDQGAFPPTARWGWLT---TRTENIGEALDKAFHD-IEAGVKGTDLQHVLTATQY 121

Query: 126 ---RLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              R+     L ++ ++F+  +L + D     ++ + YE+LI++F  +  +   +F TP+
Sbjct: 122 GDKRVLSDHTLQRLLRHFNQYKLGNADLYKADMLGDAYEYLIKQFADDAGKKGGEFYTPK 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--PPI 239
            VV L   LL DP        PGM  ++YDPTCG+GG L ++ +H+A       +   P 
Sbjct: 182 GVVQLVVGLL-DP-------QPGM--SVYDPTCGSGGMLVESAHHIAGLPGGTLLGGKPN 231

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++ +GQE    T A+    + +  + ++  R     + +   L  D    K F   ++NP
Sbjct: 232 VLLYGQEKNLGTWAIAKLNLYLHNMRAEIER--GDTLVEPKHLDGDYL--KTFDRVIANP 287

Query: 300 PFGKK--WEKDKDAVEKEHKNGE--------------LGRFGPGLPKISDGSMLFLMHLA 343
           PF  K  W   + A E E + GE               GRFG G P      + F  H+ 
Sbjct: 288 PFSAKAWWAPLELAAEAEQE-GEKKPKAPNYKQVSDPYGRFGYGFPPRGYADLAFAQHML 346

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDLIEAIVAL 393
             L+      GR  ++L    LF  R+G  E +IR  LL            DLIEAI+ L
Sbjct: 347 ASLK----ADGRMGVILPHGVLF--RSGE-EGKIRDGLLFGTDAASGQQPGDLIEAIIGL 399

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+ LF+ T I   + +L+  K    +GKV +I+A+  +     EGK + ++      +I 
Sbjct: 400 PSALFYNTGIPACVLVLNKNKPATLKGKVIIIDASRDYL----EGKAQNMLRPGDITRI- 454

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
              V+R    F ++ +  +  Y R+  L  +R
Sbjct: 455 ---VARHKAAFDQLTEVES--YCRVVTLDEIR 481


>gi|315231357|ref|YP_004071793.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Thermococcus barophilus MP]
 gi|315184385|gb|ADT84570.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Thermococcus barophilus MP]
          Length = 515

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 39/331 (11%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  + N + + + FDF   +   + A +L ++ + FSG++L  +  PD V+ + YE ++
Sbjct: 119 LAELNPNLRGVVDRFDFMEFMLHRDNAEILKQLFELFSGLDLR-NASPD-VLGDAYEWIL 176

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F  + ++  E + TPR+V+ L   +L DP        PG    +YDP  G+GG L  +
Sbjct: 177 RYFAPQKAKEGEVY-TPREVIKLLVEIL-DP-------RPG--EEVYDPALGSGGMLIGS 225

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             HV +     +   + + +GQE+ P T+A+    M+I  ++          +  G TL 
Sbjct: 226 YLHVKEKFGESEAKKLFL-YGQEVNPTTYAIAEMNMMIHGIKD-------AKLAVGDTLL 277

Query: 284 KDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKISDGSML 337
           +  F      KRF   ++NPP    W +D    E+  K  E    RF  G P  +     
Sbjct: 278 RPAFKEGEKLKRFDVVIANPP----WNQDGYG-EETLKKAEFREERFKYGYPPNNSADWA 332

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+           GR  IV+ +  LF G A   E +IR  +++ DL+E ++ LP  L
Sbjct: 333 WIQHML----ASARDNGRIGIVIDNGALFRGGA---EKKIRSRIVKEDLLECVILLPEKL 385

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           F+ T     + I +  K +ER+GKV  INA+
Sbjct: 386 FYNTGAPGAIMIFNKAKPKERKGKVLFINAS 416


>gi|328951821|ref|YP_004369155.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452145|gb|AEB07974.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 198/458 (43%), Gaps = 58/458 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGGSNID 68
           L +++W  A  L G     D+ + I P    +RL C +  E T+ A+ E      G + +
Sbjct: 9   LESYLWGAATLLRGTIDAGDYKQFIFPLLFYKRL-CDVFDEETQVALTES-----GGDTE 62

Query: 69  LESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             ++      ++   + +         +G T   N L S   +  D    IF D  +++ 
Sbjct: 63  FAAYPENHRFQIPPEAHWQEMRQVAKDVGRT-LHNALRSIETANPDKLYGIFGDAQWTNK 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL  A +L  + ++F+ + L    +P+  +   YE+LI++F  +    A +F T R +
Sbjct: 122 -DRLPDA-MLRDLIEHFATLNLSLANLPEDELGQGYEYLIKKFADDSGHTAAEFYTNRTL 179

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           VHL T +L          +P    ++YDPTCG+GG L   + H+   G   +   +   +
Sbjct: 180 VHLMTEML----------APQPGESVYDPTCGSGGMLLSCIAHLRRQGQEWRNVRL---Y 226

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE    T A+      +  +E         +I +G TL+   F      +RF   L+NP
Sbjct: 227 GQERNLMTSAIARMNCFLHGVED-------FHIVRGDTLAHPRFVEGDRLQRFDVVLANP 279

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+  K+W +   A +        GR   G P        F  H+     L P  G R AI
Sbjct: 280 PYSIKQWNRKAFAADP------WGRNLFGTPPQGRADYAFWQHIL--CSLSPQTG-RCAI 330

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E+E+RR ++E DLIE ++ L  +LF+ + +   + +    K  ER
Sbjct: 331 LFPHGVLFRQE----EAEMRRKIIEADLIECVLGLGPNLFYNSPMEACVVVCRMAKPRER 386

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           RGK+ LINA +  T  R +      + D   + IL  Y
Sbjct: 387 RGKILLINAVNEVTRERAQS----FLTDTHIQHILHAY 420


>gi|284108344|ref|ZP_06386408.1| Type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829905|gb|EFC34191.1| Type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 545

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 204/503 (40%), Gaps = 80/503 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL------ECALEPTRSAVREKYLAFG 63
           SL ++IW  A  + G      +   ILP    +RL      E     T    REK     
Sbjct: 24  SLESWIWDAACSIRGAKDAPKYKDYILPLIFAKRLCDVFDDELNRIATEVGSREKAFQLV 83

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA------------ 111
            ++    +  K A   FY         L   +T   + S I   SD              
Sbjct: 84  VADWRRVADKKKAMVRFY-------LPLMPKDTEQPVWSVIRKLSDKIGEGVTTHMREIA 136

Query: 112 ------KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                 K I +  DF++T    R      L  + +  S   L    V   ++   YE+LI
Sbjct: 137 RENPLLKGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLADVEADIIGKSYEYLI 196

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F     + A +F TP +V  +  A +L PD       PGM   +YDPTCG+GG L   
Sbjct: 197 RKFAEGSGQSAGEFYTPGEVGEI-MARVLAPD-------PGM--EIYDPTCGSGGLLIKC 246

Query: 224 ----MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                  V         P  L   GQE  PET A+    M+I         D+   I+ G
Sbjct: 247 ELAMEAKVKAAKKTKDAPLPLKLFGQEYVPETWAMANMNMIIH--------DMEGQIEIG 298

Query: 280 STLSKDLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKI 331
            T     F  ++      F   ++NP     W +D   +E ++ N EL RF  G G P  
Sbjct: 299 DTFKNPRFRAEKSGKLRTFDRVVANP----MWNQDS-YIEADYDNDELDRFPAGAGFPGK 353

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIE 388
           S     ++ H+   L    N  GRAA+VL +     G   +G   E  +R+W ++ DLIE
Sbjct: 354 SSADWGWVQHMHASL----NDKGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIE 409

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +++ LP +LF+ T     +  L+  K   R+GK+ L+NA+ ++     +G  +  I  + 
Sbjct: 410 SVLYLPENLFYNTTAPGIVLFLNKAKPRARQGKIFLVNASQVF----EKGDPKNFIPPEG 465

Query: 449 RRQILDIYVS-RENGKFSRMLDY 470
             +I  I +  +E  K SR++ +
Sbjct: 466 IARIAGILIKWKEEEKLSRIVAH 488


>gi|254190415|ref|ZP_04896923.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938091|gb|EDO93761.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 543

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 199/463 (42%), Gaps = 61/463 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L N++W  A  L G     D+ + I P    +R+    +       E   A   SN
Sbjct: 44  SQQELENYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWD------EEYQAALANSN 97

Query: 67  IDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            DL S+ + A          + +N    +   +G+   +  + +   +  D    IF D 
Sbjct: 98  GDL-SYAQFAENHRFQIPAGAHWNDVRQTPKNVGAA-IQKAMRAIETANPDLLDGIFGDA 155

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +++   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F 
Sbjct: 156 PWTNR-ERLPDE-TLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFY 213

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++   
Sbjct: 214 TNRTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGGEYR--- 260

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR---FHY 294
            L  +GQE    T ++    + +  +E          I +G TL+      G R   F  
Sbjct: 261 TLKLYGQERNLITSSIARMNLFLHGVE-------DFEIIRGDTLADPKHIEGDRLRQFDV 313

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPP+  K+W ++  + +K       GR   G P        F  H+   L       
Sbjct: 314 ILANPPYSIKQWNREGWSSDK------WGRNSLGTPPQGRADYAFQQHILTSL----TAK 363

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +
Sbjct: 364 GRCAVLWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRK 419

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           KT  RRGKV  I+A    + +  E + +  +  + ++ IL+ Y
Sbjct: 420 KTAARRGKVIFIDAV---SEVARE-RAQSFLKPEHQQHILNAY 458


>gi|302333478|gb|ADL23671.1| Type I restriction-modification system methyltransferase subunit,
           HsdM_2 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 518

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 208/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWTDEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMINLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L          G   K+       GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLL-------RVGKETKVYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K+ ++   V  I+A++ +     +GK +  + D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKSRQQDDNVLFIDASNDF----EKGKNQNHLTDTQVDRIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|209554541|ref|YP_002284449.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209542042|gb|ACI60271.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 510

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 37/311 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+ +  F  +  +   +F TP+ VV L   +L DP+D +          +YDP 
Sbjct: 160 LVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL-DPNDNI---------KMYDPA 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTGG    A N++ +    +K    LV +GQE + +T  +    +L+     +   D+ 
Sbjct: 210 CGTGGMFVQARNYLHE---QNKDYNKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIH 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T  +DL  G++F   ++NPPF  KKW ++      E  N E  RF  G+P  +
Sbjct: 264 LGRGSEDTFKEDLHKGQKFDIIVANPPFNLKKWYRE------ELLNDE--RFSWGMPPEN 315

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L+H+ +KL    N  G+A ++L++  L    +   ES +R+ ++E ++++AI++
Sbjct: 316 NANYAWLLHIISKL----NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIIS 369

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I+  +W  +  K  E    ++     +L T      KK R +  D   +I
Sbjct: 370 LPDKLFYTTQISASIWFFNKNKENENVLFIEASKMGELKT------KKLRFLTKDNISKI 423

Query: 453 LDIYVSRENGK 463
            ++Y   E G+
Sbjct: 424 KNVYDKHEQGE 434


>gi|197249396|ref|YP_002149446.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213099|gb|ACH50496.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 496

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 205/467 (43%), Gaps = 59/467 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGS 65
           S   L   +W  AE L G    +D+ + I P    +RL +  LE    A+    L  G  
Sbjct: 2   SNKKLEELLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYNEAME---LHEG-- 56

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDF 120
             D E       + F   SE +   + +T+        N    I   +     +F D  +
Sbjct: 57  --DAEYAAMPMFHRFNIPSEAAWEKVRNTSKNIGEAIQNALRLIEVNNPRLHGVFGDAQW 114

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T 
Sbjct: 115 TNK-ERLPDH-LLADLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTN 172

Query: 181 RDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           R VVHL T ++ L P +           T YDPTCGTGG L +A+  +   G   +   +
Sbjct: 173 RTVVHLMTRIMGLKPGE-----------TAYDPTCGTGGMLLNAVMDLRARGEEWRSVHL 221

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
              +GQE+   T A+    M +  +E         ++ +G TL++  F      K+F   
Sbjct: 222 ---YGQEVNLLTSAIARMNMFLHDIEE-------FDVLRGDTLAEPKFIENDRLKQFDVI 271

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +NPP+  KKW +DK A +        GR   G+P        F  H+   L+  P+ G 
Sbjct: 272 FANPPYSIKKWNRDKFAADP------YGRNLYGVPPQGCADYAFYTHIIKSLK--PDTG- 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K
Sbjct: 323 RAAMLWPHGVLFR----DSEQTIRKQVVESDIIEAVIGLGPNLFYNSPMESCVVVLNCNK 378

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             ER+ KV  IN  +  T  R   +    ++ D    + + Y S EN
Sbjct: 379 PAERKNKVLFINGVEHVTRERAHSR----LSKDDLAVLCEAYFSPEN 421


>gi|254718011|ref|ZP_05179822.1| Type I site-specific deoxyribonuclease HsdM [Brucella sp. 83/13]
 gi|265982954|ref|ZP_06095689.1| type I restriction-modification system methyltransferase subunit
           [Brucella sp. 83/13]
 gi|306839791|ref|ZP_07472592.1| type I restriction-modification system, M subunit [Brucella sp. NF
           2653]
 gi|264661546|gb|EEZ31807.1| type I restriction-modification system methyltransferase subunit
           [Brucella sp. 83/13]
 gi|306405146|gb|EFM61424.1| type I restriction-modification system, M subunit [Brucella sp. NF
           2653]
          Length = 518

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 206/485 (42%), Gaps = 70/485 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAF 62
           T   A+L   IW+ A D+ G     DF + +L     R +            E  KY A 
Sbjct: 4   TQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGVLFYRFISENFASYIEGGDESIKYAAL 63

Query: 63  GGSNIDLE---SFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE--SYIASFSDNA----- 111
             S +  E     +K  GY  Y +  ++ ++    +N + N E  +  A+   +A     
Sbjct: 64  ADSVVTAEIKDDAIKTKGYFIYPSQLFANVAAKARSNEKLNTELATIFAAIESSANGYPS 123

Query: 112 ----KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEH 161
               K +F DFD +S   RL     +K   L  + K  +G++  H D     +  + YE 
Sbjct: 124 EHDIKGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVAGLDFGHFDAAHIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L      A+ K++   +  +YDP CG+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQL------AMHKQTS--VNKIYDPACGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A  H       H I       GQE+   T+ +    M +  +  D       NIQ G+T
Sbjct: 234 QAKKHF----DAHVIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNT 282

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L +  F + K F   +SNPP+  KW    D   +  E       RF P   L   S    
Sbjct: 283 LLEPHFGSDKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 336 AFVLHALSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +L+  KT+      Q I+A+ L+    N      ++ D    QI+  +
Sbjct: 389 LFYGTTIAVNILVLAKNKTDTL---TQFIDASGLFKKETN----NNVLLDSHIEQIMQAF 441

Query: 457 VSREN 461
            S+ +
Sbjct: 442 DSKND 446


>gi|319428577|gb|ADV56651.1| N-6 DNA methylase [Shewanella putrefaciens 200]
          Length = 499

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 156/330 (47%), Gaps = 42/330 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L   +L
Sbjct: 126 LLATLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMVNIL 185

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDP CGTGG L + ++HV + G     P +L   GQE    T
Sbjct: 186 ----------DPQAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKNLTT 232

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    + +   E         +I +G TL +  F      + F   ++NPPF  K+W 
Sbjct: 233 EAIARMNLFLHGQE-------DFDIVRGDTLREPKFLKHDRLETFDCVIANPPFSLKEWG 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D  + +        GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 286 YDYWSADP------YGRAKYGLAPKTNGDFAWVQHMFASL----NESGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E  IR  LL+ + I A++ + ++LF+ T I   + +L  ++    +  V +IN
Sbjct: 336 RGGA---EGTIRENLLKENRIVAVIGVASNLFYGTGIPACILVLRKQRPVAHQDHVLIIN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           A +++T    +G+ +  +++ Q   I DIY
Sbjct: 393 AEEIFT----KGRAQNTLSETQADNIYDIY 418


>gi|253735165|ref|ZP_04869330.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726829|gb|EES95558.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 518

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 207/480 (43%), Gaps = 73/480 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNI 67
           A L   +W  A DL G+   ++F   IL     R L E A +    A+  + +A+  +  
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYSDALAGEDIAYQEAWA 71

Query: 68  DLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLESYIASFS 108
           D E         +   GY                T ++ +  L +T  R    S +   S
Sbjct: 72  DEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEES 130

Query: 109 DNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEH 161
           +N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE 
Sbjct: 131 ENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFR 400
           + + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ 
Sbjct: 340 MVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 446


>gi|171920731|ref|ZP_02931943.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185178769|ref|ZP_02964571.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024396|ref|ZP_02997059.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518458|ref|ZP_03003945.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524187|ref|ZP_03004251.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867477|ref|ZP_03079481.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273583|ref|ZP_03206119.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225550744|ref|ZP_03771693.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551327|ref|ZP_03772273.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903476|gb|EDT49765.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209382|gb|EDU06425.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018667|gb|EDU56707.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998124|gb|EDU67221.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195659966|gb|EDX53346.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660953|gb|EDX54206.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198250103|gb|EDY74883.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379142|gb|EEH01507.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379898|gb|EEH02260.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 510

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 37/311 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+ +  F  +  +   +F TP+ VV L   +L DP+D +          +YDP 
Sbjct: 160 LVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL-DPNDNI---------KMYDPA 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTGG    A N++ +    +K    LV +GQE + +T  +    +L+     +   D+ 
Sbjct: 210 CGTGGMFVQARNYLHE---QNKDYNKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIH 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T  +DL  G++F   ++NPPF  KKW ++      E  N E  RF  G+P  +
Sbjct: 264 LGRGSEDTFKEDLHKGQKFDIIVANPPFNLKKWYRE------ELLNDE--RFSWGMPPEN 315

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L+H+ +KL    N  G+A ++L++  L    +   ES +R+ ++E ++++AI++
Sbjct: 316 NANYAWLLHIISKL----NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIIS 369

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I+  +W  +  K  E    ++     +L T      KK R +  D   +I
Sbjct: 370 LPDKLFYTTQISASIWFFNKNKENENVLFIEASKMGELKT------KKLRFLTKDDISKI 423

Query: 453 LDIYVSRENGK 463
            ++Y   E G+
Sbjct: 424 KNVYDKHEQGE 434


>gi|150020305|ref|YP_001305659.1| type I restriction-modification system, M subunit [Thermosipho
           melanesiensis BI429]
 gi|149792826|gb|ABR30274.1| type I restriction-modification system, M subunit [Thermosipho
           melanesiensis BI429]
          Length = 799

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 223/522 (42%), Gaps = 72/522 (13%)

Query: 117 DFDFSSTIAR-LEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSE 172
           DFD S+ +    +K   L K+   F   EL+        D ++ ++YE+ +++F +E  +
Sbjct: 98  DFDDSTKLGNGKDKVDKLTKLIAIFENPELNFSKNRADGDDILGDVYEYFMKKFATEAGK 157

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP +V  +  A ++  ++A    SP   +T YDPTCG+G  L      VAD   
Sbjct: 158 SKGQFYTPAEVSRI-MAKIIGIENA---NSPD--QTAYDPTCGSGSLLL----KVAD--- 204

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
             + P  +  +GQE++ +   +    M+   L   P       I+QG+TLS   F  K  
Sbjct: 205 --EAPVEISLYGQEIDIDVANLARMNMI---LHGKP----DAVIEQGNTLSDPKFKNKDG 255

Query: 291 ---RFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               F + ++NPPF +K W    D      +N    RF  G+P   +G   FL+H    L
Sbjct: 256 SLKTFDFAVANPPFSQKNWMNGVDP-----ENDSFHRFDDGIPPAKNGDYAFLLHFIKSL 310

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +    G GR AI+L    LF G A   E+EIRR L++   I+ I+ LP +LF+ T I   
Sbjct: 311 K---PGKGRGAIILPHGVLFRGNA---EAEIRRNLVKKGYIKGIIGLPPNLFYGTGIPAI 364

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + ++       R+G + +I+A+      R +G K R+   D  + +       E   +SR
Sbjct: 365 IMVIDKENAHARKG-IFMIDAS---KGFRKDGPKNRLRERDIHKIVTTFVNFEEIPGYSR 420

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           M+          K    L +   +D T     E DI       +H      I K  + +I
Sbjct: 421 MVSLEEIE----KNDYNLNIPRYVDSTE----EEDI-----QDIHAHLHGGIPKRDIDKI 467

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
                 +   KE  +  E    ++K     +  FI      D   +    +   W     
Sbjct: 468 EELKIFKGLKKELFEEKEDCYYRLKVGIELLQEFIEIHEEIDKFKNNALMIFKNW----- 522

Query: 587 LTEYENVPYLESIQDY-----FVREVSPHVPDAYIDKIFIDE 623
             + E + +L+SI +      F++E+S  + DA+    F+DE
Sbjct: 523 --KEEKIMFLKSIDNNTRVKPFIKELSESLLDAFKSAAFVDE 562


>gi|49482660|ref|YP_039884.1| type I restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|297588824|ref|ZP_06947465.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49240789|emb|CAG39454.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|297577335|gb|EFH96048.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312436477|gb|ADQ75548.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193171|gb|EFU23570.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 518

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 208/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L          G   K+       GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLL-------RVGKEAKVYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|197247972|ref|YP_002149445.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211675|gb|ACH49072.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 499

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 42/330 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR +V L   +L
Sbjct: 126 LLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMVNIL 185

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDP CGTGG L + ++HV + G     P +L   GQE    T
Sbjct: 186 ----------DPKAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKNLTT 232

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    + +   E         +I +G TL +  F      + F   ++NPPF  K+W 
Sbjct: 233 EAIARMNLFLHGQE-------DFDIVRGDTLREPKFLQSDRLETFDCVVANPPFSLKEWG 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D         N   GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 286 YDL------WSNDPYGRKQYGLAPKTNGDFAWVQHMFASL----NDNGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E  IR  LL+ + I AI+ + ++LF+ T I   + +L   +    +  V +IN
Sbjct: 336 RGGA---EGVIRTKLLKENRIVAIIGVASNLFYGTGIPACILVLRKSRPATHKDHVLIIN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           A +++T    +G+ +  +++ Q   I  IY
Sbjct: 393 AEEIYT----KGRAQNTLSNKQADDIYQIY 418


>gi|257424551|ref|ZP_05600980.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427217|ref|ZP_05603619.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257429853|ref|ZP_05606240.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432557|ref|ZP_05608920.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435461|ref|ZP_05611512.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903019|ref|ZP_06310912.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282907408|ref|ZP_06315256.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282912639|ref|ZP_06320435.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913267|ref|ZP_06321059.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282922895|ref|ZP_06330585.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283959867|ref|ZP_06377308.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293498314|ref|ZP_06666168.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509255|ref|ZP_06667972.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293550522|ref|ZP_06673194.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295426965|ref|ZP_06819604.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|257273569|gb|EEV05671.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257276848|gb|EEV08299.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257280334|gb|EEV10921.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257283436|gb|EEV13568.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257286057|gb|EEV16173.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282315116|gb|EFB45502.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282323367|gb|EFB53686.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324335|gb|EFB54651.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282330307|gb|EFB59828.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282597478|gb|EFC02437.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789459|gb|EFC28286.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290919569|gb|EFD96645.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291097245|gb|EFE27503.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467894|gb|EFF10403.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|295129417|gb|EFG59044.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 525

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 208/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 19  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 72

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 73  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 131

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 132 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 188

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 189 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 240

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L          G   K+       GQE    T+ +    ML+  +     R  + +
Sbjct: 241 SGSLLL-------RVGKEAKVYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFD 285

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 286 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 341 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 393

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 394 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 447

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 448 TYKRKE 453


>gi|37680392|ref|NP_935001.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199139|dbj|BAC94972.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 499

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 155/330 (46%), Gaps = 42/330 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L   +L
Sbjct: 126 LLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMVNIL 185

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDP CGTGG L + ++HV + G     P +L   GQE    T
Sbjct: 186 ----------DPQANESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKNLTT 232

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    + +   E          I +G TL    F      + F   ++NPPF  K+W 
Sbjct: 233 EAIARMNLFLHGQED-------FEIVRGDTLRDPKFLKNDQLENFDCVIANPPFSLKEWG 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D         +   GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 286 YDY------WTSDPYGRASFGLAPKTNGDFAWVQHMFASL----NDEGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E +IR  LL+ + I A++ + ++LF+ T I   + +L   + EE +  V ++N
Sbjct: 336 RGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKVRPEEHKDHVLIVN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           A +++T    +G+ +  +++ Q  +I  IY
Sbjct: 393 AEEIFT----KGRAQNTLSEPQADEIYGIY 418


>gi|68536334|ref|YP_251039.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263933|emb|CAI37421.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 819

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 209/484 (43%), Gaps = 97/484 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +WK+A++L G    + +   +L    ++ +    +    ++ E  +  GGS  D
Sbjct: 8   SDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSDKAKSDPYSLIE--VPEGGSFDD 65

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--ASFSD---------------NA 111
           L     VA     +  E     +      N+L+  I  A F D               N 
Sbjct: 66  L-----VALKGATDIGEKMNIAIRRLAEANDLQGVINNADFDDPNKLGEGKAMQDRLTNL 120

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            +IF+D DF+ + A                          D ++ + YE+L+R F +E  
Sbjct: 121 VSIFQDIDFTGSRAE------------------------GDDLLGDAYEYLMRHFATESG 156

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP +V  +   +L  P     K++P    T+YDPTCG+G  L      VAD  
Sbjct: 157 KSKGQFYTPAEVSRIMAQVLEIP-----KDTPRST-TVYDPTCGSGSLLI----KVADSA 206

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
                P  L  +GQE +  T A+    M++   E+        +I+QG TLS   F    
Sbjct: 207 -----PNGLSIYGQEKDNATWALSRMNMILHGNET-------HDIRQGDTLSDPKFLRGE 254

Query: 290 --KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANK 345
             + F Y ++NPPF  K W   K+  +KE+     GRF G   P   +G   FL+H+   
Sbjct: 255 QLQTFDYFVANPPFSVKTW---KNGFDKEY-----GRFEGFAEPPEKNGDYAFLLHMVKS 306

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR A++L    LF G     E++IR  L+   LI+AI+ LP +LF+ T I  
Sbjct: 307 LK----SDGRGAVILPHGVLFRGNT---EAQIREELIRRGLIKAIIGLPANLFYGTGIPA 359

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + ++  ++   R G    I   D       +G K R+   D R+ I+D Y++ E   ++
Sbjct: 360 CIIVIDKKEAANRTG----IFMVDASKGFEKDGAKNRLRPRDMRK-IIDTYLAGEEVERY 414

Query: 465 SRML 468
           +RM+
Sbjct: 415 ARMV 418


>gi|49485299|ref|YP_042520.1| putative restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49243742|emb|CAG42167.1| putative restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 518

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 207/487 (42%), Gaps = 86/487 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQETWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQR 449
            ++F+ T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQEDYVLFIDASNDFEKGKNQNHLTDAQVERIINTYKR 444

Query: 450 RQILDIY 456
           ++ +D Y
Sbjct: 445 KETIDKY 451


>gi|186701606|ref|ZP_02971313.1| type I restriction-modification system, M subunit family
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|186700836|gb|EDU19118.1| type I restriction-modification system, M subunit family
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 510

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 37/311 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+ +  F  +  +   +F TP+ VV L   +L DP+D +          +YDP 
Sbjct: 160 LVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL-DPNDNI---------KMYDPA 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTGG    A N++ +    +K    LV +GQE + +T  +    +L+     +   D+ 
Sbjct: 210 CGTGGMFVQARNYLHE---QNKDYNKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIH 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T  +DL  G++F   ++NPPF  KKW ++      E  N E  RF  G+P  +
Sbjct: 264 LGRGSEDTFKEDLHKGQKFDIIVANPPFNLKKWYRE------ELLNDE--RFSWGMPPEN 315

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L+H+ +KL    N  G+A ++L++  L    +   ES +R+ ++E ++++AI++
Sbjct: 316 NANYAWLLHIISKL----NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIIS 369

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I+  +W  +  K  E    ++     +L T      KK R +  D   +I
Sbjct: 370 LPDKLFYTTQISASIWFFNKNKENENVLFIEASKMGELKT------KKLRFLTKDDILKI 423

Query: 453 LDIYVSRENGK 463
            ++Y   E G+
Sbjct: 424 KNVYDQHEQGE 434


>gi|262374615|ref|ZP_06067888.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
 gi|262310405|gb|EEY91496.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
          Length = 522

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 162/339 (47%), Gaps = 46/339 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +D+   +FED D +ST  +L     ++  L+ K+  +   I+         V+ + YE+L
Sbjct: 130 ADDFANLFEDLDLNST--KLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYL 187

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F S   + A +F TP+ V  L   ++    D L        R++YDPTCG+G  L  
Sbjct: 188 IGEFASGAGKKAGEFYTPQTVSTLLAKIVTQGKDRL--------RSVYDPTCGSGSLLLR 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGST 281
               V D           + +GQE+   T+ +    M++  +        +K +I+Q +T
Sbjct: 240 VKREVKDVD---------MIYGQEMNRTTYNLARMNMILHDVH------FAKFDIKQENT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L++     K+F   ++NPPF   W  D   ++ E +    G+  P     S   M F+ H
Sbjct: 285 LTRPQHLDKKFDAVVANPPFSANWSADPLFLQDE-RFAAYGKLAPS----SKADMAFVQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           +  +L+      G  A+VL    LF    GS E  IR++L+E  ++++AI+ LP ++F+ 
Sbjct: 340 MLYQLD----DNGTMAVVLPHGVLFR---GSSEGVIRQYLIEQMNVVDAIIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           T+I T + +L  +K  E+   +  I+A++ +   +N+ K
Sbjct: 393 TSIPTCILVL--KKNREQSSNILFIDASNEFEKQKNQNK 429


>gi|73661362|ref|YP_300143.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72493877|dbj|BAE17198.1| putative type I restriction-modification system methyltransferase
           subunit [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 518

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 206/485 (42%), Gaps = 83/485 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   +W  A DL G+   ++F   IL     R L    E   + V E   A  G ++ 
Sbjct: 12  AELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLS---EKAETEVAE---ALSGEDLT 65

Query: 69  LES--------------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--------AS 106
            E                ++  GY       +S       N R ++E  +        ++
Sbjct: 66  YEEAWEDEEYREDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAIRKVETST 125

Query: 107 FSDNAK----AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMS 156
              N++     +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ 
Sbjct: 126 LGQNSEEDFIGLFSDMDLSST--RLGNTVKERTALISKVMVNLGDLPFVHSDMEID-MLG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI RF +   + A +F TP+ V  +   ++    D L        R +YDPTCG+
Sbjct: 183 DAYEFLIGRFAANAGKKAGEFYTPQQVSKILAQIVTLGKDKL--------RNVYDPTCGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L              K   +   +GQE    T+ +    ML+  +     R  + +I
Sbjct: 235 GSLLLRV----------GKETTVYRYNGQERNNTTYNLARMNMLLHDV-----RFENFDI 279

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           Q   TL    F G++F   ++NPP+  KW  D     K + +     +G   PK S    
Sbjct: 280 QNDDTLENPAFEGEKFDAVVANPPYSAKWSADS----KFNDDERFSNYGKLAPK-SKADF 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPT 395
            F+ H+ + L    +  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP 
Sbjct: 335 AFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPA 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T+I T + +   +K  E    V  I+A++ +     +GK +  + D+Q  +I+  
Sbjct: 388 NIFYGTSIPTCVLVF--KKCREADQDVLFIDASNEF----EKGKNQNHLTDEQVEKIIAT 441

Query: 456 YVSRE 460
           Y +RE
Sbjct: 442 YKNRE 446


>gi|302332146|gb|ADL22339.1| Type I restriction-modification system methyltransferase subunit,
           HsdM_1 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 518

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 208/487 (42%), Gaps = 86/487 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMINLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L          G   K+       GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLL-------RVGKETKVYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWIADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQR 449
            ++F+ T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKR 444

Query: 450 RQILDIY 456
           ++ +D Y
Sbjct: 445 KETIDKY 451


>gi|37680390|ref|NP_934999.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199137|dbj|BAC94970.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 509

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 200/452 (44%), Gaps = 64/452 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
           L + +W  AE L G    +D+ + + P    +RL            + YL      ++L 
Sbjct: 19  LEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLS-----------DVYLEEYNEALELH 67

Query: 70  ESFVKVAGYSFYNT----SEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDF 120
           E   + A  S Y+      E S   + +T+        N    I + ++    +F D  +
Sbjct: 68  EGDAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQW 127

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T 
Sbjct: 128 TNK-ERLPDH-LLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTN 185

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T ++        K  PG   + YDPTCGTGG L   +N V D  S  +    +
Sbjct: 186 RTVVHLMTRIM--------KLKPG--ESAYDPTCGTGGML---LNAVMDLRSQGEEWRGV 232

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE+   T A+    M +  +E         ++ +G TL    F      K+F    
Sbjct: 233 HLYGQEVNLLTSAIARMNMFLHDIEE-------FDVMRGDTLGDPKFIENDQLKQFDVIF 285

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPP+  KKW ++K A +        GR   G+P        F  H+   L+  P+ G R
Sbjct: 286 ANPPYSIKKWNREKFAADP------YGRNMYGVPPQGCADYGFYTHIIKSLK--PDTG-R 336

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K 
Sbjct: 337 AAMLWPHGVLFR----DSEQAIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKP 392

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            ER+ K+  IN  +    +  E    R+ +DD
Sbjct: 393 FERKNKILFINGVE---HVTRERAHSRLSDDD 421


>gi|21282121|ref|NP_645209.1| type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300911069|ref|ZP_07128518.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21203557|dbj|BAB94257.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300887248|gb|EFK82444.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 518

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 207/487 (42%), Gaps = 86/487 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQR 449
            ++F+ T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQEDYVLFIDASNDFEKGKNQNHLTDAQVERIINTYKR 444

Query: 450 RQILDIY 456
           ++ +D Y
Sbjct: 445 KETIDKY 451


>gi|331655788|ref|ZP_08356777.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
 gi|331046562|gb|EGI18651.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
          Length = 518

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 206/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSN 66
           A L   IW+ A D+ G     DF + +L     R +         A  +   Y A   S 
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEADDDSICYAALDDSV 67

Query: 67  I--DL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
           I  D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   T     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFTEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|171920161|ref|ZP_02931556.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar
           1 str. ATCC 27813]
 gi|171902534|gb|EDT48823.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar
           1 str. ATCC 27813]
          Length = 476

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 37/311 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+ +  F  +  +   +F TP+ VV L   +L DP+D +          +YDP 
Sbjct: 126 LVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL-DPNDNI---------KMYDPA 175

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTGG    A N++ +    +K    LV +GQE + +T  +    +L+     +   D+ 
Sbjct: 176 CGTGGMFVQARNYLHE---QNKDYNKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIH 229

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T  +DL  G++F   ++NPPF  KKW ++      E  N E  RF  G+P  +
Sbjct: 230 LGRGSEDTFKEDLHKGQKFDIIVANPPFNLKKWYRE------ELLNDE--RFSWGMPPEN 281

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L+H+ +KL    N  G+A ++L++  L    +   ES +R+ ++E ++++AI++
Sbjct: 282 NANYAWLLHIISKL----NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIIS 335

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I+  +W  +  K  E    ++     +L T      KK R +  D   +I
Sbjct: 336 LPDKLFYTTQISASIWFFNKNKENENVLFIEASKMGELKT------KKLRFLTKDDILKI 389

Query: 453 LDIYVSRENGK 463
            ++Y   E G+
Sbjct: 390 KNVYDRHEQGE 400


>gi|120400560|gb|ABM21472.1| HsdM1 [Staphylococcus aureus]
          Length = 518

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 206/481 (42%), Gaps = 74/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNI 67
           A L   +W  A DL G+   ++F   IL     R L E A +    A+  + + +  +  
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEEITYQEAWA 71

Query: 68  DLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLESYIASFS 108
           D E         +   GY                T ++ +  L +T  R    S +   S
Sbjct: 72  DEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEES 130

Query: 109 DNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEH 161
           +N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE 
Sbjct: 131 ENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFR 400
           + + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ 
Sbjct: 340 MVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQRRQILDI 455
           T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R++ +D 
Sbjct: 393 TSIPT--CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKRKETIDK 450

Query: 456 Y 456
           Y
Sbjct: 451 Y 451


>gi|328952628|ref|YP_004369962.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452952|gb|AEB08781.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 522

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 213/479 (44%), Gaps = 71/479 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           A +L +++W+ A  + G      F   ILPF  L+RL    +     V      FG   I
Sbjct: 7   APALESWLWEAACQIRGPLDAPKFKDYILPFIFLKRLSDVFD---DEVEHLAHDFGDRKI 63

Query: 68  D---LESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
               ++   K+  +     + +   +  T G      +    +A  +     + +  DF+
Sbjct: 64  AATLVDQDHKLVRFYMPKAARWPHIATITTGLGQALTDAVRAVARENPKLSGVIDITDFN 123

Query: 122 STIA--RL---EKAGLLYKICKNFS---GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +T A  R+    +   L ++  N +   G+E   D  PD ++   YE+L+R+F     + 
Sbjct: 124 ATAAGQRIVDDSRLAALVQVLNNPNYRLGLE---DVEPD-ILGRAYEYLLRKFAEGQGQS 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GS 232
           A +F TP + V +  A +L+P        PGM  T+ DP CG+GG L      + +  G 
Sbjct: 180 AGEFYTPLE-VGIVMARILEP-------QPGM--TVCDPCCGSGGLLIKCHLRLLETKGE 229

Query: 233 HH----KIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            H    K+PP + P   +GQE+   T A+      I  +E+D        I  G T+ + 
Sbjct: 230 KHNGRLKLPPAIAPLQLYGQEINSVTFAMARMNAFIHDMEAD--------IALGDTMHRP 281

Query: 286 LFT---GKRFHYCL--SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            FT   G+  H+ L  +NP + +K+          ++N    RFG G+P  S     ++ 
Sbjct: 282 AFTEGDGRLRHFALVTANPMWNQKFGA------ATYENDTYERFGRGVPPSSSADWGWVQ 335

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDL 397
           H+   L    +  GR A+VL +  +  G   +G   E +IR+  +E D IEA++ LP +L
Sbjct: 336 HMTAIL----SDSGRMAVVLDTGAVSRGSGNTGSNKERDIRKKFVEEDRIEAVLLLPENL 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F+ T     + +L+ RK     G++ LINA+ L+     +G+ +  + +    QI  +Y
Sbjct: 392 FYNTTAPGIVMVLNCRKRHP--GEILLINASKLFA----KGRPKNYLEEAHLEQIAQVY 444


>gi|170761794|ref|YP_001787475.1| type I restriction-modification system, M subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408783|gb|ACA57194.1| type I restriction-modification system, M subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 511

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 213/487 (43%), Gaps = 71/487 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M+  +   A+L   +W  A DL G+ +  +F   IL     R L   +E           
Sbjct: 1   MSVSSEQQANLHARLWDIANDLRGNMEANEFKNYILELIFYRYLSEKVEGRAEDLLKEDN 60

Query: 50  ----------PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98
                       R A++E+ LA  G  I+   ++  +      T  + +  L G+ N  +
Sbjct: 61  ISYREAWEDEEYREALQEELLAQIGYFIE-PKYLFSSLMKEIETGNFDVEMLQGAIN--D 117

Query: 99  NLESYIASFS-DNAKAIFEDFDFSST-IAR--LEKAGLLYKICKNFSGIELHPDTVPDRV 154
             ES +   S D+   +F+D D +ST + R    ++ L+ K+  N S I+   D     V
Sbjct: 118 ITESTLGHKSEDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDV 177

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F +   + A +F TP+ V  +   L+      + K+    ++++YDP C
Sbjct: 178 LGDAYEYLISQFAATAGKKAGEFYTPQQVSKILAKLV-----TVGKKD---LKSVYDPAC 229

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L              K   +   +GQEL   T+ +    ML+  + S  R D   
Sbjct: 230 GSGSLLLRV----------SKEANVRYFYGQELTSTTYNLARMNMLLHDI-SYERFD--- 275

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I+   TL        +F   ++NPP+  KW  D   ++ E        +G   PK S  
Sbjct: 276 -IRNDDTLENPEHIDMKFDAVVANPPYSAKWSADNKFLDDER----FSAYGKLAPK-SKA 329

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVAL 393
              F+ H+  +L    N GG  A+VL    LF G A   E  IR++L+ E + ++ I+ L
Sbjct: 330 DYAFVQHMIYQL----NDGGTMAVVLPHGVLFRGAA---EGVIRKYLIKEKNYLDGIIGL 382

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + +   +K  E    V  I+A+  +     +GK + ++ D    +I+
Sbjct: 383 PPNIFFGTSIPTAILVF--KKCRENSDNVIFIDASREF----EKGKNQNVLRDCDVEKII 436

Query: 454 DIYVSRE 460
             YV RE
Sbjct: 437 STYVKRE 443


>gi|86137460|ref|ZP_01056037.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp.
           MED193]
 gi|85825795|gb|EAQ45993.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp.
           MED193]
          Length = 514

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 202/475 (42%), Gaps = 69/475 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL-ESFV 73
           IW  A D+ G     DF + +L     R +         A  +     G S+ ++ + FV
Sbjct: 14  IWAIANDVRGAVDGWDFKQFVLGALFYRFISENFVNYADAGDDNVNYAGMSDSEVPDDFV 73

Query: 74  ----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDNAKAIFE 116
               K  GY  Y +  +S + +   NT ++L + +A+               ++   +F 
Sbjct: 74  IEAVKTKGYFIYPSQLFS-NVVSQANTNDSLNTDLAAIFAAIEGSANGYPSEEDISGLFA 132

Query: 117 DFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           DFD +S   RL     +K   L  + K  +G+ L  D     +  + YE LI+ + +   
Sbjct: 133 DFDTTSN--RLGNTVKDKNARLAAVLKGVAGLPLTFDDSQRDLFGDAYEFLIKNYAANAG 190

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  V  L   + +             I  ++DP CG+G  L  A   + D G
Sbjct: 191 KSGGEFFTPPHVSKLIAKIAI--------HGQTTINKIFDPACGSGSLLLQAKYFLKDHG 242

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGK 290
                       GQE+   T+ +    M +  +  D       NIQ G+TL+   F   K
Sbjct: 243 VEDGY------FGQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNTLTDPHFGDDK 291

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLEL 348
            F   +SNPP+  KW+   D      +     RF P   L   S     F++H  + L  
Sbjct: 292 PFDAIVSNPPYSIKWKGSDDPTLINDE-----RFAPAGVLAPKSKADFAFVLHALSYL-- 344

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  GRAA+V      + G A   E +IR++L++N+ +EA++AL  +LF+ T IA  + 
Sbjct: 345 --SAKGRAALVCFPGIFYRGGA---EQKIRKYLVDNNYVEAVIALAPNLFYGTTIAVNIL 399

Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +L+  K   +   VQ I+AT  D +    N  +    ++DD   +++ I+ S+EN
Sbjct: 400 VLAKNK---QNTDVQFIDATGEDFFDKKTNNNE----MSDDHIAEVMRIFDSKEN 447


>gi|228994625|ref|ZP_04154449.1| Type I restriction-modification system, M subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228765110|gb|EEM13840.1| Type I restriction-modification system, M subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 517

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 209/481 (43%), Gaps = 72/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFGGS-- 65
           A L   +W  A DL G     +F   IL     R L   +E    S + E  L+F  +  
Sbjct: 12  AELHKKLWAMANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFVEAWE 71

Query: 66  ----NIDLESF-VKVAGYSFYNTSEYSLST------LGSTNTRN-----NLESYIASFSD 109
                 DL+ + +   GY    T +Y  ST      LG+    +     N   +I S + 
Sbjct: 72  NDEYREDLQEYLINELGYVI--TPQYLFSTFVKEIELGANGNFDIEMLQNGVKFIESSTM 129

Query: 110 NAKA------IFEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            A +      +F+D D  SS + R  KA   L+ K+  N + I    D V   V+ + YE
Sbjct: 130 GADSQEDFENLFDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYE 189

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           ++I +F +   + A +F TP+ V  +   ++              I+ +YD TCG+G  L
Sbjct: 190 YMISQFAANAGKKAGEFYTPQQVSRILAKIV--------TAGKTEIKDVYDGTCGSGSLL 241

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                     G   K+      +GQE    T+ +    ML+  +   P +    +I+   
Sbjct: 242 L-------RVGKEAKVYNY---YGQEKVSTTYNLARMNMLLHDI---PYQRF--DIKNAD 286

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL +     KRF   ++NPP+  KW  D D  + + +     +  P     S     F+ 
Sbjct: 287 TLEEPQHLDKRFEAIVANPPYSAKWSAD-DKFQDDERFSNYAKLAPK----SKADFAFVQ 341

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFF 399
           H  + L    +  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP ++FF
Sbjct: 342 HFIHHL----DDNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPGNIFF 394

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T   IL  +K  +    V  I+A++ +     +GK +  ++DDQ  +I+D Y+SR
Sbjct: 395 GTSIPT--CILVFKKCRKHDDNVIFIDASNEF----EKGKNQNHLSDDQVEKIVDTYLSR 448

Query: 460 E 460
           E
Sbjct: 449 E 449


>gi|15926109|ref|NP_373642.1| type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus N315]
 gi|13700322|dbj|BAB41620.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus N315]
          Length = 518

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 VNIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|57650597|ref|YP_186690.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|148266892|ref|YP_001245835.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392937|ref|YP_001315612.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|161510023|ref|YP_001575682.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|258413472|ref|ZP_05681747.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|258421404|ref|ZP_05684331.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|258436896|ref|ZP_05689236.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|258444386|ref|ZP_05692720.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|258445598|ref|ZP_05693778.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|258448130|ref|ZP_05696259.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|258455962|ref|ZP_05703917.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282893571|ref|ZP_06301804.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|282927465|ref|ZP_06335083.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|295405681|ref|ZP_06815491.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297245589|ref|ZP_06929457.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|304378946|ref|ZP_07361711.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284783|gb|AAW36877.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|147739961|gb|ABQ48259.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945389|gb|ABR51325.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|160368832|gb|ABX29803.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257839719|gb|EEV64188.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|257842828|gb|EEV67250.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|257848687|gb|EEV72674.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|257850645|gb|EEV74593.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|257855548|gb|EEV78483.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|257858645|gb|EEV81519.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|257862174|gb|EEV84947.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|269941283|emb|CBI49678.1| type I restriction-modification system modification protein
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282590789|gb|EFB95865.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|282764257|gb|EFC04384.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|285816131|gb|ADC36618.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus 04-02981]
 gi|294969756|gb|EFG45775.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297177575|gb|EFH36826.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|304342474|gb|EFM08348.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828927|emb|CBX33769.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130059|gb|EFT86048.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329314488|gb|AEB88901.1| Type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329725916|gb|EGG62395.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 518

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|329730414|gb|EGG66804.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 207/487 (42%), Gaps = 86/487 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQR 449
            ++F+ T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKR 444

Query: 450 RQILDIY 456
           ++ +D Y
Sbjct: 445 KETIDKY 451


>gi|82750144|ref|YP_415885.1| type I site-specific deoxyribonuclease [Staphylococcus aureus
           RF122]
 gi|82751391|ref|YP_417132.1| type I restriction-modification system M subunit [Staphylococcus
           aureus RF122]
 gi|82655675|emb|CAI80072.1| type I site-specific deoxyribonuclease [Staphylococcus aureus
           RF122]
 gi|82656922|emb|CAI81357.1| type I restriction-modification system M subunit [Staphylococcus
           aureus RF122]
          Length = 518

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 207/487 (42%), Gaps = 86/487 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDSKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF    G+ E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFR---GASEGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQR 449
            ++F+ T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKR 444

Query: 450 RQILDIY 456
           ++ +D Y
Sbjct: 445 KETIDKY 451


>gi|120400562|gb|ABM21473.1| HsdM2 [Staphylococcus aureus]
          Length = 518

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 206/480 (42%), Gaps = 73/480 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNI 67
           A L   +W  A DL G+   ++F   IL     R L E A +    A+  + + +  +  
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEEITYQEAWA 71

Query: 68  DLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLESYIASFS 108
           D E         +   GY                T ++ +  L +T  R    S +   S
Sbjct: 72  DEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEES 130

Query: 109 DNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEH 161
           +N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE 
Sbjct: 131 ENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDEQFSG----YGKLAPK-SKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFR 400
           + + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ 
Sbjct: 340 MVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 446


>gi|304569843|ref|NP_942538.2| hypothetical protein slr6095 [Synechocystis sp. PCC 6803]
          Length = 512

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 191/435 (43%), Gaps = 51/435 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    ++F + I     L+R     E     +    LA G S  + 
Sbjct: 8   QLERHLFKAADILRGKMDASEFKEYIFGMLFLKRASDVFEQQYQQIIRDNLAKGRSEEEA 67

Query: 70  ESFVKVAG--YSFYNTSEYSLSTLGST---NTRNNLESYIASFSDNAKA---IFEDFDFS 121
           +   + A     F+       +T+      N  N L   +A+  ++  A   +    DF+
Sbjct: 68  KQRAERASSYQDFFVPERARWATIRDELHDNVGNGLNKALAALEESNVALSGVLGHIDFN 127

Query: 122 STIARLEKAGL-LYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             + +   +   L ++  +F+   L + D V   ++   YE+LI  F     +   +F T
Sbjct: 128 RKVGKTTLSDTKLRELIFHFNKYRLLNEDFVFPDLLGAAYEYLIAEFADSAGKKGGEFYT 187

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVV L   L+        K + GM  ++YDP  G+GG L  A  ++ +CG   +   +
Sbjct: 188 PRDVVQLMVRLV--------KPAAGM--SIYDPCVGSGGMLIQAKQYIEECGGDSRNLSL 237

Query: 240 LVPHGQELEPETHAVCVAGMLIR-----RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
               GQ+      A+C   ML+      R+E++      ++I  G          +RF  
Sbjct: 238 C---GQDNNGGVWAICKINMLLHGIKDARIENEDTLQNPRHIVDGEL--------ERFDR 286

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPPF + +EK     +    +G    + P   K +D  ++F  H+ + L++    GG
Sbjct: 287 VLSNPPFSQNYEKTNLEFKNRFNHG----WCPESGKKAD--LMFAQHMLSVLKV----GG 336

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL--SN 412
             A V+    LF G     E +IR+ L+E D IEAI+ LP +LF+ T I   + ++  + 
Sbjct: 337 IVATVMPHGVLFRG---GDEQKIRKSLIEKDQIEAIIGLPPNLFYGTGIPACILVMRRAG 393

Query: 413 RKTEERRGKVQLINA 427
            K  ERRGKV  INA
Sbjct: 394 EKLPERRGKVLFINA 408


>gi|227530269|ref|ZP_03960318.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
 gi|227349823|gb|EEJ40114.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 198/455 (43%), Gaps = 48/455 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+ + +WK A+ L G    +++  V+L    L+ +  + E   + + +        + D+
Sbjct: 11  SIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLKSDYPEDAEDPDM 70

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              E+   V   + +   + S  T       ++    I   +D+ + +    +++S    
Sbjct: 71  YLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLRGVLSK-NYASPDLD 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             + G +  +  + S  + H       ++  +YE+ +  F S+  +   +F TPR +V  
Sbjct: 130 KTRLGEVVDLISDISLGDKHAKQ--SDILGRVYEYFLNEFASQEGKKGGEFYTPRSIVRT 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P   R +YDP CG+GG    +   V +   H      L  +G+E
Sbjct: 188 LVEMI----------EPYKGR-IYDPCCGSGGMFVQSDKFVQE---HQGKIGDLSVYGEE 233

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW 305
             P T  +    + IR +      D +    QG T + DL  G+RF + L+NPPF  K W
Sbjct: 234 SNPTTWKLAKMNLAIRGI------DNNLGPHQGDTFTNDLHKGERFDFILANPPFNVKNW 287

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             DK          E  R+  G+P + + +  ++ H+ +KL   P+G  +A  VL++  L
Sbjct: 288 NGDKLR--------EDARWKYGVPPVGNANYAWIEHIISKL--APDG--KAGFVLANGAL 335

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGK 421
               +   E  IR+ LLE+D I+AIVA+P+ +F+ T I   LW +   K       R+G+
Sbjct: 336 --STSTKEEYTIRKALLEDDKIDAIVAMPSQMFYSTGIPVSLWFIDMNKESPDERNRKGE 393

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              I+A DL   I    +  R  + D  +++ D Y
Sbjct: 394 TLFIDARDLGEMI---DRTHRAFSKDDIKKVADTY 425


>gi|209523721|ref|ZP_03272274.1| type I restriction-modification system, M subunit [Arthrospira
           maxima CS-328]
 gi|209495753|gb|EDZ96055.1| type I restriction-modification system, M subunit [Arthrospira
           maxima CS-328]
          Length = 513

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 209/495 (42%), Gaps = 90/495 (18%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF-- 62
           T   A+L   IW+ A D+ G     DF + +L  TL  R           + E + ++  
Sbjct: 4   TQQRAALQRQIWQIANDVRGSVDGWDFKQYVLG-TLFYRF----------ISENFTSYAE 52

Query: 63  -GGSNIDLESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF- 107
            G  +ID                 +K  GY  Y  S+   +   S NT  +L + +A+  
Sbjct: 53  GGDDSIDYAKLSDSDIPDDFKDDAIKTKGYFIY-PSQLFANIAASANTNESLNTDLAAIF 111

Query: 108 -----SDNA-------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DT 149
                S N        K +F DFD +S   RL     +K   L  + K  +G++    D 
Sbjct: 112 AAIESSANGYPSEPDIKGLFADFDTTSN--RLGNTVKDKNLRLAAVLKGVAGLDFGGFDA 169

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               +  + YE LI  + +   +   +F TP+ V  L   L      A+ +++   +  +
Sbjct: 170 SHIDLFGDAYEFLISNYAANAGKSGGEFFTPQQVSRLIAQL------AMHQQTS--VNKI 221

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP CG+G  L  A  H  D    H+I      +GQE+    + +    M +  +  +  
Sbjct: 222 YDPACGSGSLLLQAKKHFDD----HRIEEGF--YGQEINHTNYNLARMNMFLHNINYNKF 275

Query: 270 RDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
                NIQ G+TL+   F  ++ F   +SNPP+  KW    D            RF P  
Sbjct: 276 -----NIQLGNTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDDPTLINDD-----RFAPAG 325

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S     F++H  + L    +  GRAAIV      + G A   E++IR++L++N+ 
Sbjct: 326 VLAPKSKADFAFVLHCLSYL----SSSGRAAIVCFPGIFYRGGA---EAKIRKYLVDNNY 378

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E ++AL  +LFF T IA  + +LS  K +      Q I+A+ L+    N       + D
Sbjct: 379 VETVIALAPNLFFGTPIAVTVLVLSKDKPDS---TTQFIDASGLFKKETN----NNTLTD 431

Query: 447 DQRRQILDIYVSREN 461
           D   +I+ ++ S+EN
Sbjct: 432 DHIAEIMGVFDSKEN 446


>gi|320450633|ref|YP_004202729.1| type I restriction-modification system subunit M [Thermus
           scotoductus SA-01]
 gi|320150802|gb|ADW22180.1| type I restriction-modification system, subunit M [Thermus
           scotoductus SA-01]
          Length = 523

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 205/477 (42%), Gaps = 67/477 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           ++ N++W  A  + G      F   ILP   L+RL    E   + +  +   FG   +  
Sbjct: 5   TMENWLWSAACAIRGPVDAPKFKDYILPLIFLKRLSDVFEDEIARLSAR---FGSEKVAR 61

Query: 70  ESFVK------VAGYSFYNTSEYSL-----STLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           +   K      V    FY   E         T+G      +    +A  +     + +  
Sbjct: 62  DLVEKERQRGNVTLVRFYIPEEARWEAIRRQTVGLGQFLTDAVRAVARENPQLAGVIDMV 121

Query: 119 DFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF++T A  R+     L  + +  S   L    V   ++   YE+L+R+F     + A +
Sbjct: 122 DFNATAAGQRIVSDEHLKSLIEVLSQHRLGLADVEPDILGRAYEYLLRKFAEGQGQSAGE 181

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------DC 230
           F TPR+V  +  A LL+P+       PGM  ++YDP CG+GG L      +       D 
Sbjct: 182 FYTPREV-GILMARLLEPE-------PGM--SVYDPACGSGGLLIKCHLRLVEKYGQKDP 231

Query: 231 GSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                +P  + P    GQE+ P T A+     +I  +E+D        I+ G T+ +  F
Sbjct: 232 SGRLHLPSTIAPLRVFGQEINPATFAMARMNAVIHDIEAD--------IRLGDTMRQPAF 283

Query: 288 ---TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
              +G+   F    +NP + +K+ ++       ++N    RF  G+P  S     +L H+
Sbjct: 284 RDGSGRLQTFDLIAANPMWNQKFPQEL------YENDPFERFRYGVPPSSSADWGWLQHM 337

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFF 399
              L    N  GR A+VL +  +  G    G   E +IR+  +E DL+EA++ LP +LF+
Sbjct: 338 LASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRKAFVEADLVEAVILLPENLFY 393

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            T     + +++ RK     G++ LINA+  +     +G+ +  + ++    I ++Y
Sbjct: 394 NTTAPGVILVINRRKRHP--GEILLINASQQFA----KGRPKNYLAEEHIETIAEVY 444


>gi|300721109|ref|YP_003710377.1| type I restriction-modification enzyme subunit M [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627594|emb|CBJ88113.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           nematophila ATCC 19061]
          Length = 819

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 171/354 (48%), Gaps = 48/354 (13%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F G++L  +    D +M + YE+L+R F +E  +    F TP +V  L  A +
Sbjct: 115 LSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKGQFYTPAEV-SLVLAKI 173

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           +  +D   +++     ++YDPTCG+G  L  A +           P  L   GQE++  T
Sbjct: 174 IGINDKTPRDA-----SVYDPTCGSGSLLLKASDEA---------PRGLSIFGQEMDVTT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK-W 305
            ++    M++   ESD       +IQQG+T++  +F       K F + ++NPPF  K W
Sbjct: 220 SSLAKMNMILHGHESDVH-----SIQQGNTIASPVFKDDKGQLKTFDFAVANPPFSNKNW 274

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
               +  E E      GRFG G+P   +G   FL+H+   L+      G+ A++L    L
Sbjct: 275 TSGINPREDE-----FGRFGWGIPPEKNGDYAFLLHILKSLK----STGKGAVILPHGVL 325

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGK 421
           F G A   ES IR  L++   I+ I+ LP +LF+ T I   + +L  +       +  GK
Sbjct: 326 FRGNA---ESLIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVLDKQDAISADFDAEGK 382

Query: 422 V---QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           V   + I   D       +G K R+ + D  + I++++  ++   +FSR+++++
Sbjct: 383 VTRGRDIFMIDASRGFIKDGNKNRLRSQDIYK-IVEVFTQQKTLPRFSRVVEFK 435


>gi|283469726|emb|CAQ48937.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 518

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|187930245|ref|YP_001900732.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|187727135|gb|ACD28300.1| N-6 DNA methylase [Ralstonia pickettii 12J]
          Length = 498

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 208/461 (45%), Gaps = 58/461 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGGSN 66
           + L   +W++A  L G     DF   I P    +R+ C +  E  +  V E        +
Sbjct: 9   SQLEGHLWESANILRGPVDAADFKTYIFPLLFFKRI-CDVWDEEYQEIVDET------GD 61

Query: 67  IDLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            +L  F      ++     +N      S +G+   R   E   A+  D    +F D  +S
Sbjct: 62  EELAWFPESHRFQIPEDCHWNDVRAKASNVGTALQRAMREIERAN-PDTLYGVFGDAQWS 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A +F TPR
Sbjct: 121 NK-ERLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNKKAGEFYTPR 178

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPIL 240
            VV L   +L DP +A          T+YDP CGTGG L  A+ HV +  G   ++   L
Sbjct: 179 SVVRLMIDML-DPKEA---------ETIYDPACGTGGMLLAAVQHVKEMHGDVKRLWGKL 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKR---FHYCL 296
             +GQE    T ++    + +  +E          + +G TL +   F G R   F   +
Sbjct: 229 --YGQEKNLTTSSIARMNLFLHGIED-------FQVVRGDTLRNPAFFEGDRLATFDCVI 279

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF  +KW +D         N   GR   GLP  S G   ++ H+   +    +  GR
Sbjct: 280 ANPPFSLEKWGEDL------WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---ADATGR 330

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+VL    LF  R G  E  IR+ LLE DL++A++ L  +LF+ T +A  + +L  RK+
Sbjct: 331 MAVVLPQGALF--RKGV-EGSIRQKLLEMDLVDAVIGLAPNLFYGTGLAACILLLRKRKS 387

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            + + KV + +A+ L+      G+ +  +  +   +IL  Y
Sbjct: 388 AKHKKKVLIADASRLF----RRGRAQNYLEAEHAAEILGWY 424


>gi|298693765|gb|ADI96987.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus subsp. aureus ED133]
          Length = 518

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADGEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|269202053|ref|YP_003281322.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262074343|gb|ACY10316.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 518

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGILFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|57651317|ref|YP_185366.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87160229|ref|YP_493119.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|151220610|ref|YP_001331432.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161508680|ref|YP_001574339.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141678|ref|ZP_03566171.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|57285503|gb|AAW37597.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126203|gb|ABD20717.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|150373410|dbj|BAF66670.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160367489|gb|ABX28460.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|269940011|emb|CBI48387.1| type I restriction-modification system modification protein
           [Staphylococcus aureus subsp. aureus TW20]
 gi|302750321|gb|ADL64498.1| Type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|320139279|gb|EFW31158.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 518

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|163801599|ref|ZP_02195497.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174516|gb|EDP59318.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 504

 Score =  120 bits (302), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 215/494 (43%), Gaps = 67/494 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
           L + +W  AE L G    +D+ + + P    +RL            + YL      ++L 
Sbjct: 6   LEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLS-----------DVYLEEYNEALELH 54

Query: 70  ESFVKVAGYSFYNT----SEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDF 120
           E   + A  S Y+      E S   + +T+        N    I + ++    +F D  +
Sbjct: 55  EGDAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQW 114

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T 
Sbjct: 115 TNK-ERLPDH-LLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTN 172

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI- 239
           R VVHL T ++        K  PG   + YDPTCGTGG L +A+  +   G         
Sbjct: 173 RTVVHLMTRIM--------KLKPG--ESAYDPTCGTGGMLLNAVMDLRAQGEESSTNGQQ 222

Query: 240 ---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              +  +GQE+   T A+    M +  +E         ++ +G TL +  F      K+F
Sbjct: 223 WRGVHLYGQEVNLLTSAIARMNMFLHDIEE-------FDVMRGDTLGEPKFIENDQLKQF 275

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               +NPP+  KKW ++K A +        GR   G+P        F  H+   L+  P+
Sbjct: 276 DVIFANPPYSIKKWNREKFAADP------YGRNMYGVPPQGCADYGFYTHIIKSLK--PD 327

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G RAA++     LF       E  IR+ ++E+D+IEA+V L  +LF+ + + + + +L+
Sbjct: 328 TG-RAAMLWPHGVLFR----DSEQAIRKQVIESDIIEAVVGLGPNLFYNSPMESCVVVLN 382

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
             K  ER+ K+  IN  +  T  R   +    ++DD    + + Y   +N +  + ++D 
Sbjct: 383 CNKPVERKNKILFINGIEHVTRERAHSR----LSDDDLDVLCEAYFKPDNQRDITALVDL 438

Query: 471 RTFGYRRIKVLRPL 484
            T    +  +  PL
Sbjct: 439 DTISENQYNLSIPL 452


>gi|24636602|dbj|BAC22943.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus]
          Length = 518

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 208/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  + + ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILSKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMIHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|167041819|gb|ABZ06560.1| putative N-6 DNA methylase [uncultured marine microorganism
           HF4000_097M14]
          Length = 572

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 212/471 (45%), Gaps = 60/471 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L +F+W+ A+ L G+    +F   I     L+R+  + +  R  V  K+L    +    
Sbjct: 9   QLESFLWETADILRGNMDAAEFKDYIFATMFLKRISDSFDDEREKVINKFLKKKKNQKQA 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED-----------F 118
           E          Y+T  + +      N   NL+  + +  + A A  ED            
Sbjct: 69  EKLANDPDQ--YDT--FFIPKKAHWNHLKNLKHDVGAVLNKATAAIEDQNPSLEGVLVSI 124

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           DF+      +K   L  +  +FS   L + D     +M + YE+LI+ F     +   +F
Sbjct: 125 DFNKKDKLSDKK--LRDLLSHFSKHRLRNSDFEKPDLMGSAYEYLIKMFADSAGKKGGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +VV+L   L+           P     + DPTCG+GG L  + N++ + G +   P
Sbjct: 183 YTPSEVVNLLVRLI----------KPKAKMRVCDPTCGSGGMLIQSRNYLIEHGEN---P 229

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGK--RFH 293
             +   GQE+   T A+C   M +  +        + +I++G T+   K L +G+   F 
Sbjct: 230 RNISLFGQEMNQGTWAICKINMFLHSV-------FNADIKKGDTIRDPKHLRSGELMTFD 282

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             ++NPPF   KW K+      E  N   GRF  G P    G + F+ H+   L    N 
Sbjct: 283 RVIANPPFSLAKWGKE------EADNDSFGRFPYGTPPKDTGDLAFVQHMIASL----NA 332

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G   +V+    LF G   + E EIR+ +L+NDL+EA++ LP  LF+ T I   + I++ 
Sbjct: 333 YGVMGVVVPHGVLFRG---ASEMEIRKGILDNDLLEAVIGLPPKLFYGTGIPAAMLIINK 389

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +K+++R+ K+  IN +DL      EGK +  + +   ++IL  + + E+ K
Sbjct: 390 KKSKDRKNKIIFIN-SDLEFE---EGKNQNRLKEQDIKKILSKFNNFEDTK 436


>gi|290473111|ref|YP_003465972.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           bovienii SS-2004]
 gi|289172405|emb|CBJ79172.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           bovienii SS-2004]
          Length = 819

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 225/503 (44%), Gaps = 71/503 (14%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F G++L  +    D +M + YE+L+R F +E  +    F TP +V  L  A +
Sbjct: 115 LSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKGQFYTPAEV-SLVLAKI 173

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           +  +D   +++     ++YDPTCG+G  L  A +           P  L   GQE++  T
Sbjct: 174 IGINDKTPRDA-----SVYDPTCGSGSLLLKASDEA---------PRGLSIFGQEMDVTT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK-W 305
            ++    M++   ESD       +IQQG+T++  +F       K F + ++NPPF  K W
Sbjct: 220 SSLAKMNMILHGHESDVH-----SIQQGNTIASPVFKDDKGQLKTFDFAVANPPFSNKNW 274

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
               +  E E      GRFG G+P   +G   FL+H+   L+      G+ A++L    L
Sbjct: 275 TSGINPREDE-----FGRFGWGIPPEKNGDYAFLLHILKSLK----STGKGAVILPHGVL 325

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGK 421
           F G A   ES IR  L++   I  I+ LP +LF+ T I   + +L  +       +  GK
Sbjct: 326 FRGNA---ESLIRENLIKQGYIRGIIGLPANLFYGTGIPACIIVLDKQDAISADFDAEGK 382

Query: 422 V---QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR- 476
           V   + I   D       +G K R+ + D  + I++++  ++   +FSR ++++      
Sbjct: 383 VTRGRDIFMIDASRDFIKDGNKNRLRSQDIYK-IVEVFTQQKTLPRFSRTVEFKEIVAND 441

Query: 477 -RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY---GW 531
             + + R +  S   D   L A L+  I  R +  L + +W ++   +   ++     G+
Sbjct: 442 YNLNIPRYIDSSEPEDLHDLSAHLQGGIPNRDIDVLDK-YW-NVFPGIRSTLFATEREGY 499

Query: 532 AESFVKES------IKSNEAKTLKVKASKSFIV----AFINAFGRKDPRADPVTDVNGEW 581
           + S V+ +      +   E KT   ++ K F      A +    R D   + + D++G  
Sbjct: 500 SHSLVEANQVKDTILNHTEFKTFAEQSLKPFAAWCQSAALKEIHRSDNPKELLNDISGYL 559

Query: 582 IPDTNLTEYENVPYLESIQDYFV 604
                L  YE+VP L     Y +
Sbjct: 560 -----LINYESVPLLSKYDVYQI 577


>gi|227500725|ref|ZP_03930774.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217183|gb|EEI82532.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 265

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            N +   A  L G ++   +  VI+P  ++RR ECALE T+  V E Y            
Sbjct: 29  VNLVLSIANSLRGAYEAERYKDVIIPMVIIRRFECALEETKDKVVELYKKDPKKPAIF-- 86

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + + +GY FYNTSE++L  L   S N  +N E+Y+  FS N K I  + D  + I +L+K
Sbjct: 87  YERESGYPFYNTSEFNLKNLLNDSDNIASNFENYVNGFSGNVKGILSNLDIYNQIKKLDK 146

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           +  LY I K FS ++L P T+ +  M  ++E +IRR+   V  G  D  TPR+V+ L   
Sbjct: 147 SNRLYIIIKKFSEVDLDPRTIDNHKMGYLFEDIIRRYSENVEAG--DHYTPREVIRLLVD 204

Query: 190 LLLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           +LL    DD L     G + T+ D  CG    +    N   +  S   +P
Sbjct: 205 VLLAEGCDDLL--TGDGKVCTVLDAACGFRVIIVIEANSYVNIRSSRLLP 252


>gi|227893571|ref|ZP_04011376.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
 gi|227864623|gb|EEJ72044.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
          Length = 565

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 178/368 (48%), Gaps = 46/368 (12%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           I S S + + +F+D    S   RL     ++A  +  + K    +E+     P  V+ + 
Sbjct: 149 IESTSSDFEGLFQDVQLYS--PRLGANAQKQADTIANVIKAIGNLEIV--HAPGDVLGDA 204

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTG 217
           YE+LI +F SE  + A +F TP+ V  L T L L     + K  P GM  T+YDP  G+G
Sbjct: 205 YEYLIGQFASETGKKAGEFYTPQKVSELLTKLTL-----VNKNYPNGM--TVYDPAMGSG 257

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +   ++ D G        ++ +GQE+   T  +    M++  ++S      +++++
Sbjct: 258 SLLLNFRKYIEDVGGKENE---VIYYGQEINMSTFNLAKMNMILHGVDSS-----NQHLR 309

Query: 278 QGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            G TL +D    +   F   + NPP+ + W  +K  ++    +     +G   PK S   
Sbjct: 310 NGDTLDEDWPPLSQTMFDSVVMNPPYSQHWSANKGFLQ----DPRFSPYGVLAPK-SKAD 364

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP 
Sbjct: 365 YAFLLHGLYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRKKLLENGSIDAVIGLPA 417

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+I T + +L  +K +E R  V  I+A+  +   +N+   R    ++  ++ILD 
Sbjct: 418 NLFYNTSIPTVIIVL--KKDKENRS-VMFIDASKGFEKKKNQNALR----EEDIQKILDT 470

Query: 456 YVSRENGK 463
           Y  RE+ K
Sbjct: 471 YRKREDLK 478


>gi|237653814|ref|YP_002890128.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|237625061|gb|ACR01751.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 508

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 189/431 (43%), Gaps = 57/431 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W  A  L G     D+ + I P    +R+    +       E  +A   S+ DL 
Sbjct: 10  LESYLWGAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWD------EEYEVALAESDGDL- 62

Query: 71  SFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           S+ K A          + +N    +   +G+   +  + +  ++  D    IF D  +++
Sbjct: 63  SYAKFAENHRFQIPAGAHWNDVRQTPRNVGAA-IQQAMRAIESANPDLLDGIFGDAPWTN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T R 
Sbjct: 122 R-ERLPDE-TLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRT 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L  
Sbjct: 180 VVHLMTQLL----------APQADESIYDPTCGTGGMLISALDEVKRSGGEYR---TLKL 226

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE    T ++    + +  +E          I +G TL++         +RF   L+N
Sbjct: 227 YGQERNLITSSIARMNLFLHGVE-------DFQIIRGDTLAEPRHIEGDRLRRFDVILAN 279

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PP+  K+W+++    +K       GR   G P        F  H+   L    +  GR A
Sbjct: 280 PPYSIKQWDREAWTQDK------WGRNFLGTPPQGRADYAFQQHILGSL----SDRGRCA 329

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+     LF       E  +R  ++E D +EA+V L  +LF+ + + + + I + RK  E
Sbjct: 330 ILWPHGVLFRNE----EQAMRSKMIEQDWVEAVVGLGPNLFYNSPMESCILICNRRKPAE 385

Query: 418 RRGKVQLINAT 428
           R+G+V  I+A 
Sbjct: 386 RQGRVLFIDAV 396


>gi|261366732|ref|ZP_05979615.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
 gi|282571559|gb|EFB77094.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
          Length = 524

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 206/457 (45%), Gaps = 74/457 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY          
Sbjct: 13  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKYG--------- 63

Query: 70  ESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-----------KAIFED 117
           E FV  VA Y+  N       +  S    N  +  IA   D A           K    D
Sbjct: 64  EKFVDNVAFYTKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALPD 123

Query: 118 FDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             +S   I   + A LL +I K  +G     D   D ++  +YE+ + +F     +G  +
Sbjct: 124 NYYSRLHIDTAKLASLLDEIDKINTG-----DKEND-IIGRVYEYFLSKFALAEGKGKGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +V+L  A +++P D +          LYDP CG+GG    +M  V    +HH  
Sbjct: 178 FYTPKCIVNL-IAEMIEPYDGI----------LYDPCCGSGGMFVQSMKFVE---AHHGN 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHY 294
              +  +GQE    T+ +C   + IR         +S N+ +   +T + D     +  Y
Sbjct: 224 KKKVSIYGQEYTNTTYKLCKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADY 275

Query: 295 CLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF +K W  D + ++    +G        +P  S+ +  +++++ +KL    +  
Sbjct: 276 IMANPPFNQKEWRGDNELIDDPRWDGY------EVPPTSNANYGWILNIVSKL----SQN 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  
Sbjct: 326 GVAGFLLANGALSDD---GTELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKN 382

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           K      K +++  T      RN  ++R I+  D R+
Sbjct: 383 K------KARVVEETGEVKRFRN--REREILFMDLRQ 411


>gi|332655470|ref|ZP_08421207.1| ribosomal protein L11 [Ruminococcaceae bacterium D16]
 gi|332515605|gb|EGJ45218.1| ribosomal protein L11 [Ruminococcaceae bacterium D16]
          Length = 524

 Score =  120 bits (301), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 212/472 (44%), Gaps = 74/472 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D 
Sbjct: 13  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVD- 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-----------KAIFEDF 118
                VA Y+  N       +  S    N  +  IA   D A           K    D 
Sbjct: 69  ----NVAFYTKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALPDN 124

Query: 119 DFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +S   I   + A LL +I K  +G     D   D ++  +YE+ + +F     +G  +F
Sbjct: 125 YYSRLHIDTAKLASLLDEIDKINTG-----DKEND-IIGRVYEYFLSKFALAEGKGKGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V+L  A +++P D +          LYDP CG+GG    +M  V    +HH   
Sbjct: 179 YTPKCIVNL-IAEMIEPYDGI----------LYDPCCGSGGMFVQSMKFVE---AHHGNK 224

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYC 295
             +  +GQE    T+ +C   + IR         +S N+ +   +T + D     +  Y 
Sbjct: 225 KKVSIYGQEYTNTTYKLCKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADYI 276

Query: 296 LSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF +K W  D + ++    +G        +P  S+ +  +++++ +KL    +  G
Sbjct: 277 MANPPFNQKEWRGDNELIDDPRWDG------YEVPPTSNANYGWILNIVSKL----SQNG 326

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L++  L +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K
Sbjct: 327 VAGFLLANGALSDD---GTELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNK 383

Query: 415 TE---ERRGKVQLINATD---LWTSIRNEG----KKRRIINDDQRRQILDIY 456
                E  G+V+     +   L+  +R  G    KK   + ++ R ++  +Y
Sbjct: 384 KARVVEENGEVKRFRNREREILFMDLRQMGSPYEKKYIELTEEDRAKVRSVY 435


>gi|253735333|ref|ZP_04869498.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726740|gb|EES95469.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 579

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 73  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 126

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 127 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 185

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 186 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 295 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 340 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 395 FAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 501

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 502 TYKRKE 507


>gi|87161919|ref|YP_494443.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|151221912|ref|YP_001332734.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|87127893|gb|ABD22407.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|150374712|dbj|BAF67972.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
          Length = 579

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 73  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 126

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 127 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 185

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 186 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 295 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 395 FAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 501

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 502 TYKRKE 507


>gi|239827073|ref|YP_002949697.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239807366|gb|ACS24431.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 498

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 159/331 (48%), Gaps = 39/331 (11%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           +L +I   FS I++      ++ V+  +YE+ + +F +   +G  +F TP+ VV L   +
Sbjct: 125 ILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVKLMVEM 184

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +       FK        +YDP CG+GG    ++  V +   +     I   +GQE  P 
Sbjct: 185 I-----QPFK------GYVYDPACGSGGMFVQSIKFVEEHAGNKFDVSI---YGQESNPT 230

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +    + IR +E++         +   T  +DL    +  Y L+NPPF        D
Sbjct: 231 TWKLAKMNLAIRGIENN------LGPKHADTFHEDLHPTLKADYILANPPF-------ND 277

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           +   + K  E  R+  G+P   + +  +L H+ +KL       G+AA+VL++  L     
Sbjct: 278 SDWGQPKLVEDPRWKFGVPPAGNANYAWLQHIIDKL----GQNGKAAVVLANGSL--SST 331

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            SGE EIR+ ++  DL++AI+ALP  LF+ T+I   +WIL+  K  +  GK   I+A   
Sbjct: 332 TSGEGEIRKNIVNADLVDAIIALPDKLFYTTSIPVCIWILNRNK--KNPGKTLFIDARKF 389

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              +    +K R ++D+  R+I D Y+  +N
Sbjct: 390 GQLVT---RKLRELSDEDIRKIADTYIHWQN 417


>gi|154499002|ref|ZP_02037380.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC
           29799]
 gi|150271842|gb|EDM99068.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC
           29799]
          Length = 524

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 212/473 (44%), Gaps = 76/473 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY          
Sbjct: 13  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKYG--------- 63

Query: 70  ESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-----------KAIFED 117
           E FV  VA Y+  N       +  S    N  +  IA   D A           K    D
Sbjct: 64  EKFVDNVAFYTKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALPD 123

Query: 118 FDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             +S   I   + A LL +I K  +G     D   D ++  +YE+ + +F     +G  +
Sbjct: 124 NYYSRLHIDTAKLASLLDEIDKINTG-----DKEND-IIGRVYEYFLSKFALAEGKGKGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +V+L  A +++P D +          LYDP CG+GG    +M  V    +HH  
Sbjct: 178 FYTPKCIVNL-IAEMIEPYDGI----------LYDPCCGSGGMFVQSMKFVE---AHHGN 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHY 294
              +  +GQE    T+ +C   + IR         +S N+ +   +T + D     +  Y
Sbjct: 224 KKKVSIYGQEYTNTTYKLCKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADY 275

Query: 295 CLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF +K W  D + ++    +G        +P  S+ +  +++++ +KL    +  
Sbjct: 276 IMANPPFNQKEWRGDNELIDDPRWDGY------EVPPTSNANYGWILNIVSKL----SQN 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  
Sbjct: 326 GVAGFLLANGALSDD---GTELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKN 382

Query: 414 KTE---ERRGKVQLINATD---LWTSIRNEG----KKRRIINDDQRRQILDIY 456
           K     E  G+V+     +   L+  +R  G    KK   + ++ R ++  +Y
Sbjct: 383 KKARVVEENGEVKRFRNREREILFMDLRQMGSPYEKKYIELTEEDRAKVTGVY 435


>gi|261417779|ref|YP_003251461.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|319767408|ref|YP_004132909.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|261374236|gb|ACX76979.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|317112274|gb|ADU94766.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 497

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 39/331 (11%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           +L +I   FS I++      ++ V+  +YE+ + +F +   +G  +F TP+ VV L   +
Sbjct: 125 ILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVKLMVEM 184

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +       FK        +YDP CG+GG    +M  V +   +     I   +GQE  P 
Sbjct: 185 I-----QPFK------GYVYDPACGSGGMFVQSMKFVEEHAGNKFDISI---YGQESNPT 230

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +    + IR +E++         +   T  +DL    +  Y L+NPPF        D
Sbjct: 231 TWKLAKMNLAIRGIENN------LGPKHADTFHEDLHPTLKADYILANPPF-------ND 277

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           +   + K  +  R+  G+P   + +  +L H+ +KL    +  G+AA+VL++  L     
Sbjct: 278 SDWGQPKLIDDPRWKFGIPPAGNANYAWLQHMIDKL----SQNGKAAVVLANGSL--SSM 331

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            SGE EIR+ ++  DL++AI+ALP  LF+ T I   +WIL+  K   R  K   I+A   
Sbjct: 332 TSGEGEIRKNIVNADLVDAIIALPDKLFYTTQIPVCIWILNRNKKHPR--KTLFIDARKF 389

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              +    +K R + D+  R+I D Y++ +N
Sbjct: 390 GQLVT---RKLRELTDEDIRKIADTYINWQN 417


>gi|30250443|ref|NP_842513.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30139284|emb|CAD86436.1| possible type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 504

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 187/433 (43%), Gaps = 51/433 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +++W  A  L G     D+ + I P    +R+    +    A     LA  G +
Sbjct: 5   SQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAA----LANSGGD 60

Query: 67  IDLESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +    F      ++   + +N    +   +G+   +  + +  ++  D    IF D  ++
Sbjct: 61  LSYAQFAENHRFQIPAGAHWNDVRQTPKNVGAA-IQKAMRAIESANPDLLDGIFGDAPWT 119

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T R
Sbjct: 120 NR-ERLPDE-TLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNR 177

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L 
Sbjct: 178 TVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRAGGEYR---TLK 224

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR---FHYCLS 297
            +GQE    T ++    + +  +E          I +G TL++     G R   F   L+
Sbjct: 225 LYGQERNLITSSIARMNLFLHGVE-------DFEIIRGDTLAEPKHIEGDRLRQFDVILA 277

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPP+  K+W ++  + +K       GR   G P        F  H+   L       GR 
Sbjct: 278 NPPYSIKQWNREAWSSDK------WGRNSLGTPPQGRADYAFQQHILTSL----TAKGRC 327

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +K  
Sbjct: 328 AVLWPHGVLFRNE----EQSMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKAA 383

Query: 417 ERRGKVQLINATD 429
            R+GKV  I+A +
Sbjct: 384 ARKGKVIFIDAVN 396


>gi|15923421|ref|NP_370955.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|156978760|ref|YP_001441019.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255005227|ref|ZP_05143828.2| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|14246199|dbj|BAB56593.1| probable type I site-specific deoxyribonuclease LldI chain
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720895|dbj|BAF77312.1| probable type I site-specific deoxyribonuclease LldI chain
           [Staphylococcus aureus subsp. aureus Mu3]
          Length = 518

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 VNIFYGTSIPT--CILVFKKCCQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|225850848|ref|YP_002731082.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
 gi|225645479|gb|ACO03665.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
          Length = 898

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 44/323 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ ++YE+ +++F +E  +    F TP +V  +  A ++  + A    SP   +T YD
Sbjct: 139 DDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRV-MAKIIGVEKAT---SPD--QTAYD 192

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      VAD     + P  +  +GQE++     +    M++       R D
Sbjct: 193 PTCGSGSLLL----KVAD-----EAPVKISLYGQEIDINVANIARMNMILH-----GRPD 238

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               I QG+TLS   F       K F + ++NPPF +K   D   V    KN +  RF  
Sbjct: 239 AE--IAQGNTLSHPKFKNPDGSLKTFDFAVANPPFSQKNWMDGVNV----KNDQYHRFDD 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   +G   FL+H    L+      G+ AI+L    LF G A   E+EIR+ L++   
Sbjct: 293 GVPPAKNGDYAFLLHFIKSLK----SKGKGAIILPHGVLFRGNA---EAEIRKNLIKKGY 345

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP +LF+ T I   + ++  +  + R+G + +I+A+  +   R +G K R+   
Sbjct: 346 IKGIIGLPPNLFYGTGIPAVILVIDKKNAQARKG-IFIIDASKGY---RKDGNKNRLRER 401

Query: 447 DQRRQILDIYVS-RENGKFSRML 468
           D  + I+D +V+ +E   +SRM+
Sbjct: 402 DIHK-IVDTFVNFKEIPGYSRMV 423


>gi|329732563|gb|EGG68913.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMINLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLEIPAFLGTTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|323442787|gb|EGB00413.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O46]
          Length = 518

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFIHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I++
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDTQVERIIN 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKGKE 446


>gi|253732462|ref|ZP_04866627.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253723852|gb|EES92581.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 579

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 207/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 73  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 126

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 127 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 185

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 186 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 295 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 340 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 395 FAFIQHMIHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 501

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 502 TYKRKE 507


>gi|58583080|ref|YP_202096.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427674|gb|AAW76711.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 645

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 220/480 (45%), Gaps = 100/480 (20%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----------REKYLA 61
           A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+          +++YLA
Sbjct: 143 ADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAEDPPAAEDKDEYLA 202

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFD- 119
               NI            F+   +   S L +    N  +S I +  D+A +AI +D + 
Sbjct: 203 ---ENI------------FWVPKQARWSHLQA----NAKQSSIGTLIDDALRAIEKDNES 243

Query: 120 ----FSSTIAR--LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRF-GSEVS 171
                    AR  L K  +L ++    SGI L+     P  V+  +YE+ + +F G+E  
Sbjct: 244 LKGVLPKDYARPALNKV-MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGK 302

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            G E F TPR VVH    ++           P   R +YDP CG+GG    +   V + G
Sbjct: 303 RGGE-FYTPRSVVHTLVEMI----------EPYKGR-IYDPCCGSGGMFVQSEKFVNEHG 350

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +I  I + +GQE    T  +C   + +R ++SD R +      +GS   KD     +
Sbjct: 351 G--RIGDIAI-YGQESNYTTWRLCKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLK 401

Query: 292 FHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             + L+NPPF    W  E+ +D V          R+  G P + + +  +L H+ + L  
Sbjct: 402 ADFILANPPFNISDWGGERLRDDV----------RWAFGPPPVGNANYAWLQHIVHHLS- 450

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            P+G   A +VL++  + + +  SGE +IR+ ++E  +++ +VALP  LF+ T I   LW
Sbjct: 451 -PHG--FAGVVLANGSMSSQQ--SGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLW 505

Query: 409 ILS---------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           IL+           K  +RRG++  I+A ++ T +           D  RR++ D  V+R
Sbjct: 506 ILAKDRSNGLVLQSKLRDRRGEILFIDARNMGTLV-----------DRTRRELSDAEVAR 554


>gi|291556523|emb|CBL33640.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 805

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 213/469 (45%), Gaps = 60/469 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVRE-----KYL 60
           ++  L + +++    L G     ++   + P    +RL +   E T++A+ E     +Y 
Sbjct: 314 TSQKLFSHLFEACNILRGPINQDEYKSYVTPILFFKRLSDVYDEETQAALEESGGDEEYA 373

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           +F  ++     FV   G  + +  E S +  +   N  N +E    +  D    +F  FD
Sbjct: 374 SFAENH----RFVIPDGCHWQDVREASENVGVAIVNAMNGIER---ANPDTLSGVFSSFD 426

Query: 120 FSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            ++   + + +   L  + ++ S +++  +     VM + YE LI++F     + A +F 
Sbjct: 427 DANWTDKTKLSDERLKDLIEHMSKLKVGNNNYSADVMGDSYEFLIKKFADLSKKNAGEFY 486

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIP 237
           TPR +V L   LL          +P    T+YDP CGTGG L +A+  +  D  ++ +I 
Sbjct: 487 TPRSIVKLLIMLL----------APKAGETVYDPACGTGGMLIEAIRFMHGDKLTYGRI- 535

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
                +GQE    T A+    + +        +D    + QG TL    +    + + F 
Sbjct: 536 -----YGQEKNLATSAIARMNLFLH-----GAKDF--KVTQGDTLRSPNYLERGSLQTFD 583

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             ++NPPF  K W  +      +  +   GR   G P  S+G   +L H+   +  P  G
Sbjct: 584 CVVANPPFSLKNWGSE------QFSSDIYGRNIWGCPTDSNGDFAWLQHMVKSMN-PKTG 636

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             R A+VL    LF  R+G  E EIR+ L+E+D +EAI+ + + +F+ T ++  +  L+N
Sbjct: 637 --RCAVVLPQGVLF--RSGK-EGEIRKQLVESDKLEAIITMASGVFYSTGVSACILFLNN 691

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            K    RG++ +I+ + ++T  R     + I+ +   + + D Y + E+
Sbjct: 692 NKAVSHRGRICMIDGSSIYTPQR----AQNIMTEADIQTVFDYYTTYED 736


>gi|282915751|ref|ZP_06323521.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|282320380|gb|EFB50720.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
          Length = 460

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 164/355 (46%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 78  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 134

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 135 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL----- 181

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
               G   K+       GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 182 --RVGKETKVYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 231

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 232 FLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 286

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
               +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 287 ----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 339

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 340 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 388


>gi|84624919|ref|YP_452291.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368859|dbj|BAE70017.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 604

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 220/480 (45%), Gaps = 100/480 (20%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----------REKYLA 61
           A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+          +++YLA
Sbjct: 102 ADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAEDPPAAEDKDEYLA 161

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFD- 119
               NI            F+   +   S L +    N  +S I +  D+A +AI +D + 
Sbjct: 162 ---ENI------------FWVPKQARWSHLQA----NAKQSSIGTLIDDALRAIEKDNES 202

Query: 120 ----FSSTIAR--LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRF-GSEVS 171
                    AR  L K  +L ++    SGI L+     P  V+  +YE+ + +F G+E  
Sbjct: 203 LKGVLPKDYARPALNKV-MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGK 261

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            G E F TPR VVH    ++           P   R +YDP CG+GG    +   V + G
Sbjct: 262 RGGE-FYTPRSVVHTLVEMI----------EPYKGR-IYDPCCGSGGMFVQSEKFVNEHG 309

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +I  I + +GQE    T  +C   + +R ++SD R +      +GS   KD     +
Sbjct: 310 G--RIGDIAI-YGQESNYTTWRLCKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLK 360

Query: 292 FHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             + L+NPPF    W  E+ +D V          R+  G P + + +  +L H+ + L  
Sbjct: 361 ADFILANPPFNISDWGGERLRDDV----------RWAFGPPPVGNANYAWLQHIVHHLS- 409

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            P+G   A +VL++  + + +  SGE +IR+ ++E  +++ +VALP  LF+ T I   LW
Sbjct: 410 -PHG--FAGVVLANGSMSSQQ--SGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLW 464

Query: 409 ILS---------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           IL+           K  +RRG++  I+A ++ T +           D  RR++ D  V+R
Sbjct: 465 ILAKDRSNGLVLQSKLRDRRGEILFIDARNMGTLV-----------DRTRRELSDAEVAR 513


>gi|253315524|ref|ZP_04838737.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
          Length = 446

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 109 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 165

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 166 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 214

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 215 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 262

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 263 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 317

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 318 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 370

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 371 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 419


>gi|302871461|ref|YP_003840097.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574320|gb|ADL42111.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 814

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 210/478 (43%), Gaps = 54/478 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LAFGGSNI 67
            L   +++ A+ L G    +++ + I     L+      E  R  +R+++  + F    I
Sbjct: 10  QLETHLFRAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELRDRFQNMRFSEEQI 69

Query: 68  D--LESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD---NAKAIFEDFDFS 121
              LE  V  +   F        + L    +  N L   +++  +       + +  DF+
Sbjct: 70  QELLEDPVSYSDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELDGVLKHIDFN 129

Query: 122 STIARLE-KAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +   +   K   L  +  +F+  +L P     PD ++   YE+L++ F     +   +F 
Sbjct: 130 AVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPD-LLGAAYEYLLKEFADSAGKKGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  L   L+        K   GM  ++YDPT G+GGFL +A ++V + G +   P 
Sbjct: 189 TPSHVKKLMVRLV--------KPREGM--SIYDPTVGSGGFLIEAFHYVEEQGQN---PR 235

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQEL   T ++C   M++  +          +I+    L+  +F+     KRF  
Sbjct: 236 NLALYGQELNGLTWSICKMNMILHGIND-------AHIENEDVLTTPMFSENGYIKRFDR 288

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF + + +     E+  K G    F P   K +D  ++FL H+   L+      G
Sbjct: 289 ILANPPFSENYSRANMQFEERFKYG----FTPENGKKAD--LMFLQHMIASLK----DDG 338

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   + +++  K
Sbjct: 339 VMATVMPHGVLFRG---GQEKVIREGIVRDDLIEAIIGLPPKLFYNTGIPACIIVINKNK 395

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYR 471
            E  + K+  INA   +     EG+ +  +  +   +I+ ++   +E  K+S ++D +
Sbjct: 396 PEHLKNKILFINADREY----GEGRNQNFLRPEDIEKIVTVFDEKKEIPKYSSLVDIK 449


>gi|261403056|ref|YP_003247280.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus vulcanius M7]
 gi|261370049|gb|ACX72798.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus vulcanius M7]
          Length = 523

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 203/474 (42%), Gaps = 65/474 (13%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
           N +WK A+ L    +   +  V+L    LR L C     R  + ++      SN + E +
Sbjct: 15  NQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEDEL-----SNPNSELY 69

Query: 73  VK--------VAGYSFYNTS-----------EYSLSTLGSTNTRNNLESYIA----SFSD 109
            +        +    FY +            +Y +  + S N    +++ I      + D
Sbjct: 70  TEDPELRKMILEDKDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPD 129

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             K +       S +   + A L+ K    FS I    +     V   IYE+ + +F   
Sbjct: 130 RLKNVIPKIYAQSPLDNHDYAYLINK----FSEISFGKEYKVKDVFGRIYEYFLGKFTEV 185

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TPR +    T L++D  D       G   T++DP CG+GGF   A+  +  
Sbjct: 186 EGKLGGKFYTPRSL----TKLIVDVLDI----KGG---TIFDPACGSGGFFVSALEKLEG 234

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G       I   +GQ+ +P  + +    ++IR  E D        I+ G +   D F  
Sbjct: 235 EGIDINELSI---YGQDSDPMAYRLTKMNLIIRGAEGD--------IRIGDSYHDDKFMN 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F Y ++NPPF    E D + ++ +     +G     +P  ++ + ++++H     +  
Sbjct: 284 MVFDYVVANPPFNDS-EWDSNRIKPDDPRLRIGNKKVPVPPNNNANYMWILHFIYHTK-- 340

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+A  V+++  L    AG+ E EIR+ ++ENDL+  IVA P  LF+  ++   LW 
Sbjct: 341 --SNGKAGFVMANGAL---SAGNVEGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWF 395

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +   K +  +GKV  INA +L+  I    +++ I+ ++   +I+D +   E+G+
Sbjct: 396 IRKEKPDYMKGKVLFINAKNLYKQI---SRRQNILTEEHINKIVDKFKMLESGE 446


>gi|283768149|ref|ZP_06341064.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|283462028|gb|EFC09112.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
          Length = 405

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 164/355 (46%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 23  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 79

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 80  AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL----- 126

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
               G   K+       GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 127 --RVGKETKVYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 176

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 177 FLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 231

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 232 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 284

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 285 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 333


>gi|284052297|ref|ZP_06382507.1| Type I site-specific deoxyribonuclease HsdM [Arthrospira platensis
           str. Paraca]
 gi|78773875|gb|ABB51224.1| type I RM system M subunit [Arthrospira platensis]
 gi|291569503|dbj|BAI91775.1| type I site-specific methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 513

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 210/487 (43%), Gaps = 74/487 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAF 62
           T   A+L   IW+ A D+ G     DF + +L     R +            +   Y   
Sbjct: 4   TQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGDDDGIDYAKL 63

Query: 63  GGSNI--DL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNA-- 111
             S+I  D  +  +K  GY  Y +  ++ +   S NT  +L + +A+       S N   
Sbjct: 64  SDSDIPDDFKDDAIKTKGYFIYPSQLFA-TIAASANTNESLNTDLAAIFAAIESSANGYP 122

Query: 112 -----KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYE 160
                K +F DFD +S   RL     +K   L  + K  +G++    D     +  + YE
Sbjct: 123 SEPDIKGLFADFDTTSN--RLGNTVKDKNLRLAAVLKGLAGLDFGGFDASHIDLFGDAYE 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP+ V  L   L      A+ +++   +  +YDP CG+G  L
Sbjct: 181 FLISNYAANAGKSGGEFFTPQQVSRLIAQL------AMHQQTS--VNKIYDPACGSGSLL 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A  H  D    H+I      +GQE+    + +    M +  +  +       NIQ G+
Sbjct: 233 LQAKKHFDD----HRIEEGF--YGQEINHTNYNLARMNMFLHNINYNKF-----NIQLGN 281

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPG--LPKISDG 334
           TL+   F  ++ F   +SNPP+  KW      V  +H    N +  RF P   L   S  
Sbjct: 282 TLTDPHFGDEKPFDAIVSNPPYSVKW------VGSDHPTLINDD--RFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E++IR++L++N+ +E ++AL 
Sbjct: 334 DFAFVLHCLSYL----SSSGRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  K +      Q I A+ L+    N       + DD   +I+ 
Sbjct: 387 PNLFFGTTIAVTVLVLSKDKPDS---TTQFIYASGLFKKETN----NNTLTDDHIAEIMG 439

Query: 455 IYVSREN 461
           ++ S+EN
Sbjct: 440 VFDSKEN 446


>gi|323438363|gb|EGA96135.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 386

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 163/356 (45%), Gaps = 52/356 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 10  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFIHSDMEID-MLGDAYEFLIGRF 66

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 67  AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 115

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 116 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 163

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 164 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 218

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 219 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 271

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R++ +D Y
Sbjct: 272 --CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKRKETIDKY 325


>gi|256852236|ref|ZP_05557622.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661732|ref|ZP_05862643.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|297205598|ref|ZP_06922994.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus jensenii JV-V16]
 gi|256615282|gb|EEU20473.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260547479|gb|EEX23458.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|297150176|gb|EFH30473.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus jensenii JV-V16]
          Length = 510

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 143/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +++F S   +   +F TPR VV     ++ +P    FK       T+YDP 
Sbjct: 153 ILGRVYEYFLQKFASNEKKNGGEFYTPRSVVKTLVEMV-EP----FK------GTVYDPC 201

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H      L  +GQE  P T  +    + IR +      D +
Sbjct: 202 CGSGGMFVQSEQFVQE---HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNN 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPK 330
               Q  T + DL  G  F Y L+NPPF  KKW  EK KD            R+  G+P 
Sbjct: 253 FGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEKLKDDP----------RWKYGIPP 302

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AI
Sbjct: 303 EGNANYAWIEHIISKL----NPDGKAGFVLANGAL--STTLKEELAIRKNLLEADKIDAI 356

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  +F+ T I   LW +   K  E    RRG+   I+A +L   +    +  R  +D
Sbjct: 357 VALPDKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSD 413

Query: 447 DQRRQILDIY 456
           +  ++I D Y
Sbjct: 414 EDIKKIADTY 423


>gi|255322118|ref|ZP_05363265.1| type I restriction-modification system, M subunit [Campylobacter
           showae RM3277]
 gi|255300816|gb|EET80086.1| type I restriction-modification system, M subunit [Campylobacter
           showae RM3277]
          Length = 496

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 207/473 (43%), Gaps = 59/473 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           ++ N +WK  +   G    +D+   +L    ++ L    +     +R +Y   G     +
Sbjct: 8   TINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLEQLRAEY---GDKTERI 64

Query: 70  ESFVKVAGYSFYN--TSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSST 123
           E+ +K   +      T EY L+   + N        LE       D  + IF   DF++ 
Sbjct: 65  EAKLKKEKFKLDESCTFEYLLAHKEAVNLGEIMNKTLEKIEEDNKDKLEGIFRSIDFNNK 124

Query: 124 IA---RLEKAGLLYKICKNF--SGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDF 177
                  E+  +L  + ++F  S ++L P  +  + ++ + YE+LI  F S+  +   +F
Sbjct: 125 NKLGDTKERNAILQNLLEDFNDSRLDLRPSMLEGNDIIGDAYEYLIAHFASDAGKKGGEF 184

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  L  A L++P D            +YDPTCG+G  L  A   V   GS +   
Sbjct: 185 YTPSEVSTL-LAKLVEPKDG---------DMIYDPTCGSGSLLIKASKEV---GSKN--- 228

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +GQE   +THA+C   M +  + +D   +    I+    L  +L   K F   ++
Sbjct: 229 --FRLYGQEKNGQTHALCKMNMFLHEI-NDAVIEWGDTIRNPLHLHDNLI--KTFDIVVA 283

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPF   KW  D         N    RF    LP  S G   F++H+   L    N  G+
Sbjct: 284 NPPFSLDKWGADFAG------NDPFMRFSSYALPPKSKGDYAFVVHMIKSL----NKNGK 333

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL    LF G   S E +IR+ L+E +L++A++ LP +LF+ T+I   + +    ++
Sbjct: 334 MGVVLPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPANLFYGTSIPACILVFKKNRS 390

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
            E    V  I+A+  +     +GK +  +      +I+ +Y +R E  K+S +
Sbjct: 391 NE---DVLFIDASKEF----EKGKNQNSLTAQNIDKIVSVYKNRSEIEKYSHL 436


>gi|169825074|ref|YP_001692685.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
 gi|167831879|dbj|BAG08795.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
          Length = 502

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 196/470 (41%), Gaps = 54/470 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +       IW  A  LWG     ++ KVI+    LR +  A E      R K L
Sbjct: 1   MAEKTNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISTAFEQ-----RYKEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113
              G   + +         F+   E   ST+ +      + + I S        + N K 
Sbjct: 56  VEEGDGFEDDRDAYTMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    ++ S     +  G +  I  N   I++      + ++   YE+ I +F  +   G
Sbjct: 116 VLPK-NYGSPDLDKKVLGDVVDIFTN--NIDMSDTEASEDLLGRTYEYCIAQFAEKEGVG 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV    ++L           P     +YD  CG+GG    +   +   G+ 
Sbjct: 173 GGEFYTPSSVVKTLVSIL----------KPFENCRVYDCCCGSGGMFVQSEKFLEAHGAK 222

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                +   +GQE  P+T  +    M IR +++D             T S DL    +  
Sbjct: 223 RGAISV---YGQEANPDTWKMAKMNMAIRGIDAD------FGPYNADTFSNDLHPTLKAD 273

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           + L+NPPF    W +     +K        R+  GLP   + +  ++ H+ +   L PNG
Sbjct: 274 FILANPPFNYHPWGQQALQDDK--------RWKYGLPPAGNANYAWIQHMIH--HLAPNG 323

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             +  +VL++  L      SGE  IR+ ++E+DLIE IVA+PT LF+   I   LW +S 
Sbjct: 324 --KIGLVLANGAL--STQTSGEGTIRKKIIEDDLIEGIVAMPTQLFYSVTIPVTLWFIS- 378

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            K ++++GK   I+A  +   +    +K R  +++  +++ D + + +NG
Sbjct: 379 -KNKKQKGKTLFIDARKMGHMVD---RKHRDFDEEDIQKLADTFTAFQNG 424


>gi|282917067|ref|ZP_06324825.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|282319554|gb|EFB49906.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
          Length = 460

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 163/356 (45%), Gaps = 52/356 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 78  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 134

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 135 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 183

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 184 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 231

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 232 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 286

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
               +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 287 ----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 339

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R++ +D Y
Sbjct: 340 --CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKRKETIDKY 393


>gi|323490714|ref|ZP_08095916.1| type I restriction-modification system, M subunit [Planococcus
           donghaensis MPA1U2]
 gi|323395596|gb|EGA88440.1| type I restriction-modification system, M subunit [Planococcus
           donghaensis MPA1U2]
          Length = 527

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 169/351 (48%), Gaps = 45/351 (12%)

Query: 114 IFEDFDFSST-IAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F+D D +ST + R    ++ L+ KI  + + I    D V   V+ + YE+LI +F +  
Sbjct: 140 LFDDMDLTSTKLGRDVKSRSKLIAKIILSINDIPFLHDDVDIDVLGDAYEYLISQFAANA 199

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  +   ++         E P + + +YDPTCG+G      M  VA  
Sbjct: 200 GKKAGEFYTPQQVSKILAKIVT-------HEKPDL-KNVYDPTCGSGSL----MLRVA-- 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K   + + +GQEL   T  +    ML+  L     R    +IQ  +TL        
Sbjct: 246 ----KESNVRLFYGQELTTTTFNLARMNMLLHDL-----RYTDFDIQNENTLENPKHVDM 296

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPP+   W  D   ++ E +  + GR  P     S     F+ H+ ++L    
Sbjct: 297 RFEAVVANPPYSANWSADAKYLDDE-RFSDYGRLAPK----SKADFAFVQHMIHQL---- 347

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWI 409
           +  G  A+VL    LF G A   E  IR++L+E+ + ++A++ LP ++FF T+I T + +
Sbjct: 348 DDNGTMAVVLPHGVLFRGGA---EGVIRQFLIEDKNYLDAVIGLPANVFFGTSIPTCVLV 404

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              +KT +    V  I+A++ +     +GK +  + D+   +I+D Y +RE
Sbjct: 405 F--KKTRKEDADVIFIDASNEF----EKGKNQNNLTDENVDKIVDTYKTRE 449


>gi|283770885|ref|ZP_06343777.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461032|gb|EFC08122.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
          Length = 405

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 163/356 (45%), Gaps = 52/356 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 23  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 79

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 80  AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 128

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 129 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 176

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 177 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 231

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 232 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 284

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +R++ +D Y
Sbjct: 285 --CILVFKKCRQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIINTYKRKETIDKY 338


>gi|208435398|ref|YP_002267064.1| typeI restriction enzyme M protein [Helicobacter pylori G27]
 gi|208433327|gb|ACI28198.1| typeI restriction enzyme M protein [Helicobacter pylori G27]
          Length = 814

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 173/381 (45%), Gaps = 48/381 (12%)

Query: 97  RNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           RN+LE  I S  F+DN K            A ++    L KI  + S +  H   + D +
Sbjct: 87  RNDLEGVIDSVDFNDNTK-------LGEGKAMIDTLSNLVKIFADLS-LGAHG-ALDDDL 137

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+L+R F SE  +    F TP +V  L + L          E+    +++YDPTC
Sbjct: 138 LGDAYEYLMRHFASESGKSKGQFYTPSEVSLLLSLL------LGIDENTRQDKSIYDPTC 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A +     G        L  +GQE +  T A+C   M+   L +    D++K
Sbjct: 192 GSGSLLLKASSLAGKNG--------LTIYGQEKDISTTALCKMNMI---LHNSATADIAK 240

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPG 327
                STLS  LF      K F Y ++NPPF  K   D  +++ + K   N    RF  G
Sbjct: 241 G--GSSTLSNPLFIENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDG 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    I
Sbjct: 299 TPPEKNGDFAFLLHIIKSLK----NTGKGAVILPHGVLFRGNA---EGVIRKNLLTKGYI 351

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ L  +LF+ T+I   + +L       R+G V +I+A+      + +G K R+   D
Sbjct: 352 KGVIGLAPNLFYGTSIPACVIVLDKENARTRKG-VFVIDAS---KDFKKDGNKNRLREQD 407

Query: 448 QRRQILDIYVSRENGKFSRML 468
            ++ I      +E   +S+M+
Sbjct: 408 VQKMIDTFNAYKEIPHYSKMV 428


>gi|258424533|ref|ZP_05687410.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9635]
 gi|257845128|gb|EEV69165.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9635]
          Length = 569

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 206/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 63  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALAGEDIT 116

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 117 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 175

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 176 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 232

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 233 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 284

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 285 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 329

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 330 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 384

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 385 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 437

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  + D Q  +I++
Sbjct: 438 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLTDAQVERIIN 491

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 492 TYKCKE 497


>gi|212695171|ref|ZP_03303299.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855]
 gi|319641373|ref|ZP_07996066.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A]
 gi|212662257|gb|EEB22831.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855]
 gi|317386988|gb|EFV67874.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A]
          Length = 529

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 60/352 (17%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           G+L  +    + I+  P    D  ++  +YE+ ++ F     +   +F TP  +V L  A
Sbjct: 144 GVLKSVVDEINKID--PKKFTDHDLIGRVYEYFLQAFSINADKEEGEFYTPHSIVEL-IA 200

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            L++P D           T+YDP CG+GG    A   +   G + K   +   +GQE EP
Sbjct: 201 SLIEPFDG----------TVYDPCCGSGGMFVQATKFIEAHGGNTKAVNV---YGQESEP 247

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T+ +    + IR +            +  ST S D     +F Y ++NPPF  K     
Sbjct: 248 ATYRLAKMNLAIRGIS------YHLGDKAVSTFSDDQHKDLKFDYIMANPPFNLK----- 296

Query: 310 DAVEKEHKNGELGRF-------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  K  E G F       G G+P  S+ +  +++H+ NKL++     G A  +L++
Sbjct: 297 -------KYAEYGEFETAPRWKGYGVPPASNANYAWILHILNKLDV---NHGIAGFLLAN 346

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------R 413
             L +    S   EIR+ L+END IEAI+ LP ++F+ T+I+  LWIL+N         R
Sbjct: 347 GALDD----SDTLEIRKRLIENDKIEAIIVLPRNMFYSTDISVTLWILNNNKKGGPWHGR 402

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   R G++  I+    W S   E K  R+   +  R +  IY + +   F+
Sbjct: 403 QLRNRTGEILFIDLR-TWNSNIYEKKYVRLTETEISR-VCQIYFNWQTENFA 452


>gi|254506511|ref|ZP_05118653.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 16]
 gi|219550685|gb|EED27668.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 16]
          Length = 514

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 170/362 (46%), Gaps = 48/362 (13%)

Query: 105 ASFSDNAKAIFEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A  +D+   +FE+ D  SS + +   A   L+ ++  +   I+ H +     ++ + YE+
Sbjct: 123 ADSADDFNGLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEY 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F S   + A +F TP+ V  +   L+            G ++++YDPTCG+G  L 
Sbjct: 183 LIGQFASGAGKKAGEFYTPQQVSKILAKLV---------SLNGNVKSVYDPTCGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                V   GSH+     L   GQE  P T+ +    ML+  +  D       +I+   T
Sbjct: 234 RVAREV---GSHN-----LEFCGQEQNPSTYNLARMNMLMHGVRYDKF-----DIKNDDT 280

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLM 340
           L   +   +RF   ++NPPF   W     +  + H N E    +G   PK S     F++
Sbjct: 281 LEHPMHLEQRFDAVVANPPFSANW-----SANELHLNSERFADYGKLAPK-SKADFAFVL 334

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFF 399
           H+ ++L    N  G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF
Sbjct: 335 HMIHQL----NETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFF 387

Query: 400 RTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            T I T + +   NRK ++    V  I+A++ +     +GK +  + +D   +I++ Y  
Sbjct: 388 GTGIPTCILVFKKNRKNDD---NVLFIDASNHFE----KGKAQNFMRNDDVERIVEAYSK 440

Query: 459 RE 460
           RE
Sbjct: 441 RE 442


>gi|88194192|ref|YP_498984.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|87201750|gb|ABD29560.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
          Length = 490

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 108 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 164

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 165 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 213

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 214 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 261

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 262 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 316

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
               +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 317 ----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 369

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 370 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 418


>gi|15924798|ref|NP_372332.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927382|ref|NP_374915.1| hypothetical protein SA1626 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283480|ref|NP_646568.1| hypothetical protein MW1751 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486627|ref|YP_043848.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268280|ref|YP_001247223.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394345|ref|YP_001317020.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156980124|ref|YP_001442383.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255006594|ref|ZP_05145195.2| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|258446038|ref|ZP_05694214.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|269203441|ref|YP_003282710.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|13701601|dbj|BAB42894.1| SA1626 [Staphylococcus aureus subsp. aureus N315]
 gi|14247580|dbj|BAB57970.1| type I restriction enzyme EcoR124II M protein homolog
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204921|dbj|BAB95616.1| hsdM [Staphylococcus aureus subsp. aureus MW2]
 gi|49245070|emb|CAG43536.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741349|gb|ABQ49647.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946797|gb|ABR52733.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156722259|dbj|BAF78676.1| type I restriction enzyme EcoR124II M protein homolog
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257855280|gb|EEV78219.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|262075731|gb|ACY11704.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|285817487|gb|ADC37974.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus 04-02981]
 gi|312830179|emb|CBX35021.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130553|gb|EFT86539.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329727301|gb|EGG63757.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 518

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 204/482 (42%), Gaps = 85/482 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  +  
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFE 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IY 456
            Y
Sbjct: 441 TY 442


>gi|332704540|ref|ZP_08424628.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554689|gb|EGJ51733.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 564

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 190/434 (43%), Gaps = 55/434 (12%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT   G+ + L  A+ +WK A+ L G     ++  V+L    L+ +  + E  R  ++ +
Sbjct: 1   MTNNDGTNSELVYADTLWKAADTLRGQVDAAEYKHVVLGLLFLKYISDSFEARREELQAE 60

Query: 59  YLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
               G +   L + ++      A   F+   E   + L +  TR +    IA+  D+A  
Sbjct: 61  LQTDGITEPQLTALLENRDEYTAERVFWVPPEARWANLQNQATRAD----IATLIDDAIL 116

Query: 114 IFE--DFDFSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRR 165
             E  + +  S + R       ++G L ++ +  + +    D    R  +  +YE+ + +
Sbjct: 117 AIERDNPNLKSKLPRDYARRGIESGRLKRLIELIADVGFKGDRAKARDTLGRVYEYFLGK 176

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV L   ++ +P +            +YDP CG+GG    +  
Sbjct: 177 FAQAEGKLGGEFYTPRCVVRLLVEMI-EPYNG----------RVYDPCCGSGGMFVQSER 225

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V   G       I    GQE  P T  +    + IR +E++         Q   T  ++
Sbjct: 226 FVEAHGGQKTDISIF---GQESNPTTWRLAHMNLAIRSIEAN------LGSQPADTFLRN 276

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           L +  R  Y L+NPPF    W     +D V          R+  G P + + +  ++ H 
Sbjct: 277 LHSDLRADYILANPPFNVSDWSGKLLQDDV----------RWRYGTPPLGNANYAWIQHF 326

Query: 343 ANKLELPPN-GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
            + L LP   GGG A  V+++  L +  AG GE EIR+ ++E DL++AIVALP  LFF T
Sbjct: 327 IHHLALPNGRGGGVAGFVMANGSL-SSNAG-GEGEIRQRIVEADLVDAIVALPAQLFFTT 384

Query: 402 NIATYLWILSNRKT 415
            I   LW L+  KT
Sbjct: 385 GIPVCLWFLTRDKT 398


>gi|308183636|ref|YP_003927763.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           PeCan4]
 gi|308065821|gb|ADO07713.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           PeCan4]
          Length = 820

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 173/382 (45%), Gaps = 42/382 (10%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL---LYKICKNFSGIELHPD-TVPDR 153
           N + +YIA  +D  K + +  DF+      E   +   L  + K F+ + L     + D 
Sbjct: 82  NKIIAYIAEQND-LKGVIDSVDFNDNTKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDD 140

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+L+R F SE  +    F TP +V  L + L          E+    +++YDPT
Sbjct: 141 LLGDAYEYLMRHFASESGKSKGQFYTPSEVSLLLSLL------LGIDENTRQDKSIYDPT 194

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A +     G        L  +GQE +  T A+C   M+   L +    D++
Sbjct: 195 CGSGSLLLKASSLAGKNG--------LTIYGQEKDISTTALCKMNMI---LHNSATADIA 243

Query: 274 KNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGP 326
           K     STLS   F      + F Y ++NPPF  K   D  +++ + K   N    RF  
Sbjct: 244 KG--GSSTLSNPFFIKNNMLQTFDYVVANPPFSLKNWTDGLSIDPKSKQIINDSFNRFED 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    
Sbjct: 302 GTPPEKNGDFAFLLHIIKSLK----DTGKGAVILPHGVLFRGNA---EGAIRKNLLTKGY 354

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ L  +LF+ T+I   + +L       R+G V LI+A+      + +G K R+   
Sbjct: 355 IKGVIGLAPNLFYGTSIPACVIVLDKENARARKG-VFLIDAS---KDFKKDGNKNRLREQ 410

Query: 447 DQRRQILDIYVSRENGKFSRML 468
           D ++ I      +E   +S+M+
Sbjct: 411 DVQKMIDTFNALKEIPYYSKMV 432


>gi|317181216|dbj|BAJ59002.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 821

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 206/473 (43%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +        +N D
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAK--------NNTD 54

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 55  --SAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEKNDLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RTRKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|83720663|ref|YP_443257.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
 gi|257139493|ref|ZP_05587755.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
 gi|83654488|gb|ABC38551.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
          Length = 518

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 171/351 (48%), Gaps = 50/351 (14%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATA 189
           +L ++    SGI L+ +    + ++  +YE+ + +F G+E   G E F TPR VV +   
Sbjct: 136 MLGELIDLISGIALNEEGDRSKDILGRVYEYFLGQFAGAEGKRGGE-FYTPRSVVRVLVE 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L           P   R +YDP CG+GG    +   V + G   +I  I + +GQE   
Sbjct: 195 ML----------EPYSGR-VYDPCCGSGGMFVQSEKFVHEHGG--RIGDIAI-YGQESNY 240

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD 308
            T  +    + +R ++SD R +      +GS   KD     +  Y L+NPPF    W  D
Sbjct: 241 TTWRLAKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLKADYVLANPPFNISDWGGD 294

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +          E  R+  G P + + +  +L H+ +   L PNG   A +VL++  + + 
Sbjct: 295 RLR--------EDVRWKFGAPPVGNANYAWLQHIFH--HLAPNG--TAGVVLANGSMSSN 342

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQ 423
           +  SGE EIRR ++E D ++ +VALP  LF+ T I   LW L+  K       +RRG+V 
Sbjct: 343 Q--SGEGEIRRAMIEADAVDCMVALPGQLFYSTQIPACLWFLARNKNPGGGLRDRRGQVL 400

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDY 470
            I+A  L   I    + RR +NDD  ++I D Y +    +E G+++ +L +
Sbjct: 401 FIDARKLGVLID---RTRRELNDDDIKRIADSYHAWRGEKEAGEYADVLGF 448


>gi|329313150|gb|AEB87563.1| Type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 518

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 206/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  F +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGHFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKRKE 446


>gi|306815513|ref|ZP_07449662.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Escherichia coli NC101]
 gi|305851175|gb|EFM51630.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Escherichia coli NC101]
          Length = 518

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 205/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L  G 
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSICYAALDDGI 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  ++  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIRTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|325121239|gb|ADY80762.1| type I site-specific deoxyribonuclease [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 523

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 50/365 (13%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           A  +D+   +FED D +ST  +L     ++  L+ K+  +   I+         V+ + Y
Sbjct: 127 ADSADDFAHLFEDLDLTST--KLGNNANDRNELIAKVIIHLDAIDFDISNTESDVLGDAY 184

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F S   + A +F TP+ V  L   ++         +    +R++YDPTCG+G  
Sbjct: 185 EYLIGEFASGAGKKAGEFYTPQMVSTLLARIV--------TQGKERLRSVYDPTCGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQ 278
           L      V   G+H     +   +GQE+   T+ +    M++  +        SK +I+Q
Sbjct: 237 LLRVKREV---GNH-----VDAIYGQEMNRTTYNLARMNMILHDVH------FSKFDIRQ 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             TL K     K+F   ++NPPF  KW  D   +  E +    G+  P     S   M F
Sbjct: 283 EDTLKKPQHLDKKFDAIVANPPFSAKWSADPLFMNDE-RFKSYGKLAPS----SKADMAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+  +L+      G  A+VL    LF    GS E  IR++++E  ++I+ I+ LP ++
Sbjct: 338 VQHMLYQLD----EHGTMAVVLPHGVLFR---GSSEGHIRQFMIEQMNVIDTIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-----KRRIINDDQRRQI 452
           F+ T+I T + +L  +K  E +  +  I+A++ +   +N+ K        II   + RQ 
Sbjct: 391 FYGTSIPTCILVL--KKNREHKDNILFIDASNEFEKQKNQNKLLPEHLDNIIGAYENRQN 448

Query: 453 LDIYV 457
           +D Y 
Sbjct: 449 IDKYA 453


>gi|225026005|ref|ZP_03715197.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353]
 gi|224956655|gb|EEG37864.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353]
          Length = 532

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 151/311 (48%), Gaps = 41/311 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ N YE+LI +F SE  + A +F TP+ V  + T + +D  +    E  G+  ++YDP
Sbjct: 174 EILGNAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAIDGQE----EKKGL--SVYDP 227

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  L +A  +V       K P  +  +GQEL   T+ +    M +  + ++ ++  
Sbjct: 228 CMGSGSLLLNAKKYV-------KYPEYIRYYGQELNTSTYNLARMNMFLHGIVAENQK-- 278

Query: 273 SKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
              ++ G TL  D  TG+   F+  L NPP+  KW      ++ E        +G   PK
Sbjct: 279 ---LRNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDER----FSDYGVLAPK 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A+
Sbjct: 332 -SKADYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAV 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQR 449
           + LP +LF+ T+I T + +L     + R G+ V  I+A+  +    N+GKK+  + D+  
Sbjct: 384 IGLPANLFYNTSIPTCIIVLK----KHRDGRDVLFIDASKKF----NKGKKQNEMTDEHI 435

Query: 450 RQILDIYVSRE 460
             ++D+Y  RE
Sbjct: 436 EAVMDLYSKRE 446


>gi|261491601|ref|ZP_05988184.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494961|ref|ZP_05991430.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309370|gb|EEY10604.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312727|gb|EEY13847.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 515

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 215/497 (43%), Gaps = 80/497 (16%)

Query: 9   ASLANFIWKNAEDLWG-----DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DFK    G +   F +       +E    ++   Y A+ 
Sbjct: 8   AELHRQIWQIANEVRGAVDGWDFKQYVLGSLFYRF-ISENFSAYIEQGDESI--DYAAYS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYS----------LSTLGSTNTRNNLESYIASFSD 109
              ID     E  +K  GY  Y +  +              +   +   ++E+    F  
Sbjct: 65  DEEIDAFGIKEDAIKSKGYFIYPSQLFKNVVKNANTNNNLNIELADIFADIEASAVGFDS 124

Query: 110 --NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYE 160
             + K +F DFD  S   RL     +K   L  + K    +    D   +++    + YE
Sbjct: 125 EKDIKGLFADFDTKSN--RLGNTVEDKNKRLAAVLKGVESLNF-GDFAENQIDLFGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + S   +   +F TP++V  L   L      AL+ +S   +  +YDP CG+G  L
Sbjct: 182 YLISNYASNAGKSGGEFFTPQNVSKLIAQL------ALYGQSA--VNKIYDPACGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     D    H I       GQE+   T+ +    M +  +  D       +I+ G 
Sbjct: 234 LQAKKQFDD----HLIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----HIELGD 282

Query: 281 TL-SKDLFTGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           TL +  L   K F   +SNPP+  KW    D   +  E       RF P   L   S   
Sbjct: 283 TLINPKLKDDKPFDAIVSNPPYSIKWIGSDDPTLINDE-------RFAPAGILAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +  GRAAIV  + P    R+G+ E +IR++L+E +++E+++AL  
Sbjct: 336 FAFILHALNYL----SAKGRAAIV--TFPGIFYRSGA-EQKIRQYLIEQNVVESVIALSA 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IAT + +LS  KT+    K Q I+A+DL+    N      ++ D+   QIL +
Sbjct: 389 NLFYGTSIATNILVLSKHKTDT---KTQFIDASDLFKKETN----NNVLTDEHIAQILKL 441

Query: 456 YVSRENGK-FSRMLDYR 471
           +  + + + F++ +D R
Sbjct: 442 FADKADVEHFAKSVDNR 458


>gi|258450492|ref|ZP_05698580.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282929846|ref|ZP_06336981.1| type I restriction enzyme M protein [Staphylococcus aureus A9765]
 gi|257861797|gb|EEV84594.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282591805|gb|EFB96865.1| type I restriction enzyme M protein [Staphylococcus aureus A9765]
          Length = 382

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 163/354 (46%), Gaps = 51/354 (14%)

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFG 167
           +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF 
Sbjct: 1   MFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRFA 57

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L       
Sbjct: 58  ATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV---- 105

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  K   +    GQE    T+ +    ML+  +     R  + +I+   TL    F
Sbjct: 106 ------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAF 154

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L+
Sbjct: 155 LGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD 209

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATY 406
                 G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T 
Sbjct: 210 ----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT- 261

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 262 -CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 310


>gi|320143287|gb|EFW35074.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 394

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 12  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 68

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 69  AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 117

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 118 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 165

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 166 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 220

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 221 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 273

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 274 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 322


>gi|329731922|gb|EGG68280.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 203/482 (42%), Gaps = 85/482 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+    +F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDANEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  +  
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFE 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 440

Query: 455 IY 456
            Y
Sbjct: 441 TY 442


>gi|210135698|ref|YP_002302137.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210133666|gb|ACJ08657.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 816

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 175/381 (45%), Gaps = 48/381 (12%)

Query: 97  RNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           RN+L+  I S  F+DN K            A ++    L KI  + S + +H   + D +
Sbjct: 87  RNDLKGAIDSVDFNDNTK-------LGEGKAMIDALSNLVKIFADLS-LGVHG-ALDDDL 137

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+L+R F SE  +    F TP +V  L + L          E+    +++YDPTC
Sbjct: 138 LGDAYEYLMRHFASESGKSKGQFYTPSEVSLLLSLL------LGIDENTRQDKSIYDPTC 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A +     G        L  +GQE +  T A+C   M+   L +    D++K
Sbjct: 192 GSGSLLLKASSLAGQKG--------LTIYGQEKDISTTALCKMNMI---LHNSATADIAK 240

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPG 327
                STLS  LF      K F Y ++NPPF  K   D  +++ + K   N    RF  G
Sbjct: 241 G--GSSTLSNPLFIENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDG 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    I
Sbjct: 299 TPPEKNGDFAFLLHIIKSLKTT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYI 351

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ L  +LF+ T+I   + +L       R+G V +I+A+      + +G K R+ + D
Sbjct: 352 KGVIGLAPNLFYGTSIPACVIVLDKENAHARKG-VFVIDAS---KDFKKDGNKNRLRDQD 407

Query: 448 QRRQILDIYVSRENGKFSRML 468
            ++ I      +E   +S+M+
Sbjct: 408 VQKMIDTFNAYKEIPYYSKMV 428


>gi|118474825|ref|YP_892158.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414051|gb|ABK82471.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 501

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 200/464 (43%), Gaps = 53/464 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63
           +  ++ N IWK  +   G    +++   IL    ++ L    +     ++ +Y   L   
Sbjct: 11  TKKTIENIIWKACDTFRGTMDGSNYKDYILTMLFVKYLSDFYKEKLELLKAEYGDKLERI 70

Query: 64  GSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            + +  E F      +F Y  +    S LG    +  LE            IF + DF+S
Sbjct: 71  EAKLKKEKFRLDESCTFDYFIANKEASNLGEIINKA-LEKIEEDNRQKLNGIFRNIDFNS 129

Query: 123 TIA---RLEKAGLLYKICKNFSG--IELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAED 176
           T       ++  +L  + ++FS   ++L P  + +  ++ ++YE+LI  F S   +   +
Sbjct: 130 TAILGDTKQRNIILKNLIEDFSDDRLDLRPSMLENNDIIGDVYEYLIAHFASNAGKKGGE 189

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  L  A L++P +            +YDPTCG+G  L      +     H K 
Sbjct: 190 FYTPSEVSTL-LAKLVNPQEG---------DMIYDPTCGSGSLLIKVSKEI-----HSKN 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +   +GQE   +THA+C   M +  + +D   +    I+    L  +L   K F   +
Sbjct: 235 FRL---YGQEKNGQTHALCKMNMFLHEI-NDAVIEWGDTIRNPLHLQNNLL--KTFDIVV 288

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF   KW       E+       GRF  G+P  S G   F++H+ + L    N  G 
Sbjct: 289 ANPPFSLDKWG------EEIASGDSFGRFKFGIPPKSKGDYAFVLHMLSSL----NSHGT 338

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             ++L    LF G   S E +IR+ L+E +L++AI+ LP +LF+ T I   + I    +T
Sbjct: 339 MGVILPHGVLFRG---SSEGKIRQKLIEQNLLDAIIGLPANLFYGTGIPACIMIFKKNRT 395

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 V  I+A+  +   +N+ +    +ND    +I   Y  R
Sbjct: 396 ---NNDVLFIDASSEFYKDKNQNR----LNDALIAKIAKTYNDR 432


>gi|265755688|ref|ZP_06090309.1| type I restriction-modification system DNA methylase [Bacteroides
           sp. 3_1_33FAA]
 gi|263234294|gb|EEZ19887.1| type I restriction-modification system DNA methylase [Bacteroides
           sp. 3_1_33FAA]
          Length = 529

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 57/328 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ ++ F     +   +F TP  +V L  A L++P D           T+YDP 
Sbjct: 166 LIGRVYEYFLQAFSINADKEEGEFYTPHSIVEL-IASLIEPFDG----------TVYDPC 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   +   G + K   +   +GQE EP T+ +    + IR +         
Sbjct: 215 CGSGGMFVQATKFIEAHGGNTKAVNV---YGQESEPATYRLAKMNLAIRGIS------YH 265

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------GP 326
              +  ST S D     +F Y ++NPPF  K            K  E G F       G 
Sbjct: 266 LGDKAVSTFSDDQHKDLKFDYIMANPPFNLK------------KYAEYGEFETAPRWKGY 313

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P  S+ +  +++H+ NKL++     G A  +L++  L +    S   EIR+ L+END 
Sbjct: 314 GVPPASNANYAWILHILNKLDV---NHGIAGFLLANGALDD----SDTLEIRKRLIENDK 366

Query: 387 IEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQLINATDLWTSIRNE 437
           IEAI+ LP ++F+ T+I+  LWIL+N         R+   R G++  I+    W S   E
Sbjct: 367 IEAIIVLPRNMFYSTDISVTLWILNNNKKGGPWHGRQLRNRTGEILFIDLR-TWNSNIYE 425

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFS 465
            K  R+   +  R +  IY + +   F+
Sbjct: 426 KKYVRLTETEISR-VCQIYFNWQTENFA 452


>gi|254438740|ref|ZP_05052234.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307]
 gi|198254186|gb|EDY78500.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307]
          Length = 911

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 48/325 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLD----PDDALFKESPGMI 206
           D ++ + YE+L+R F +E  +    F TP +V   +A A+ +     PD           
Sbjct: 137 DDILGDAYEYLMRHFATEAGKSKGQFYTPAEVSRIMAKAIGISASNRPD----------- 185

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           +T+YDPTCG+G  L  A +           P  +  +GQE +  T A+    M+   L  
Sbjct: 186 QTIYDPTCGSGSLLLKARDEA---------PAGITIYGQEKDVATRALAKMNMV---LHD 233

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF 324
           DP  ++ ++    S   K+   G K F + ++NPPF  K W    D V     N +  RF
Sbjct: 234 DPTAEIWRDNTLASPHFKNDTGGLKTFDFVVANPPFSDKAWSTGLDPV-----NDQYDRF 288

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           G G+P   +G   +L+H+   L+      G+ A++L    LF G A   ESEIR  ++  
Sbjct: 289 GYGVPPAKNGDYAYLLHIVASLKTT----GKGAVILPHGVLFRGNA---ESEIREKIIRK 341

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP +LF+ T I   + ++     + R G    I   D       +G K R+ 
Sbjct: 342 GYIKGIIGLPANLFYGTGIPACIIVIDKENAQARTG----IFMVDASKGFVKDGNKNRLR 397

Query: 445 NDDQRRQILDIYVSR-ENGKFSRML 468
           + D  + I+D +  + E  K+SRM+
Sbjct: 398 SQDLHK-IVDAFTKQIEIDKYSRMV 421


>gi|160887311|ref|ZP_02068314.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483]
 gi|260171380|ref|ZP_05757792.1| Type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
 gi|315919693|ref|ZP_07915933.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
 gi|156107722|gb|EDO09467.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483]
 gi|313693568|gb|EFS30403.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
          Length = 514

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 208/475 (43%), Gaps = 72/475 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAF----GGSNIDL 69
           +W  A  L G+   +DF    L F   + L   +E   + +  E ++ F     G + +L
Sbjct: 13  LWTVANTLRGNMSASDFMYFTLGFIFYKYLSEKIELYANEILEEDHITFKEVWNGKDEEL 72

Query: 70  ESFVK---VAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNA---------K 112
           +  VK   +    ++   EY  ST+        N   +LE  +    D+           
Sbjct: 73  KQDVKEECIQNLGYFIEPEYLYSTIIELISKKENILPSLERSLKKIEDSTIGQDSEDDFG 132

Query: 113 AIFEDFDFSS-TIARL--EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGS 168
            +F D D +S  + +   +K  L+  +    +GI+       D  ++ + YE++I +F +
Sbjct: 133 GLFSDLDLASPKLGKTADDKNKLISDVLIALNGIDFGLQEAGDIDILGDAYEYMISQFAA 192

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNH 226
              + A +F TP++V  +   +++           G +R   ++DPTCG+G  L      
Sbjct: 193 GAGKKAGEFYTPQEVSQILAEIVI----------TGKVRLKDVFDPTCGSGSLLL----R 238

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            A  G    I       GQE  P T  +C   ML+  ++ +       +IQ G TL  D 
Sbjct: 239 TAKSGKADSI------FGQEKNPTTFNLCRMNMLLHGVKYNDF-----DIQNGDTLEADA 287

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F  ++F   ++NPPF   W     A +K + +    + G   P+ S     F++H+   L
Sbjct: 288 FGDRQFDAVVANPPFSADWT----AADKFNNDDRFSKAGVLAPR-SKADYAFILHMIYHL 342

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIAT 405
               N GG  A V     LF G A   E +IR++L+E  + I+AI+ LP ++F+ T+I T
Sbjct: 343 ----NDGGTMACVAPHGVLFRGAA---EGKIRQFLIEKKNYIDAIIGLPANIFYGTSIPT 395

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + ++  +K  +    +  I+A+  +  ++ + K R     +  ++I+D Y  R+
Sbjct: 396 CILVI--KKCRKEDDNILFIDASKEFEKVKTQNKLRP----EHIQKIIDTYRERK 444


>gi|88195628|ref|YP_500434.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|258415889|ref|ZP_05682160.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|258420718|ref|ZP_05683657.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|258438383|ref|ZP_05689667.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|258443827|ref|ZP_05692166.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|258448234|ref|ZP_05696361.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|258454237|ref|ZP_05702208.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282893296|ref|ZP_06301530.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|282928537|ref|ZP_06336136.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|295406113|ref|ZP_06815921.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297244963|ref|ZP_06928840.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|300911561|ref|ZP_07129006.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|87203186|gb|ABD30996.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|257839482|gb|EEV63955.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|257843322|gb|EEV67732.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|257848427|gb|EEV72418.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|257851233|gb|EEV75176.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|257858473|gb|EEV81349.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|257863689|gb|EEV86446.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282589746|gb|EFB94831.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|282764614|gb|EFC04740.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|294969110|gb|EFG45131.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297178043|gb|EFH37291.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|300887193|gb|EFK82393.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 579

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 204/482 (42%), Gaps = 85/482 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 73  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 126

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 127 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 185

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 186 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  +  
Sbjct: 295 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFE 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 395 FAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 501

Query: 455 IY 456
            Y
Sbjct: 502 TY 503


>gi|10954529|ref|NP_044168.1| type I restriction system protein M [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2496240|sp|Q60297|T1MH_METJA RecName: Full=Putative type I restriction enzyme MjaXP M protein;
           Short=M.MjaXP
 gi|1522675|gb|AAC37111.1| type I restriction enyzme ECOR124/3 I M protein [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 558

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 200/472 (42%), Gaps = 61/472 (12%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL--- 69
           N +WK A+ L    +   +  V+L    LR L C     R  + E+       N +L   
Sbjct: 50  NQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEE---LSNPNSELYTE 106

Query: 70  -----------ESFVKVAGYSFYNTS---EYSLSTLGSTNTRNNLESYIA----SFSDNA 111
                      E F    G  +       +Y +  + S N    +++ I      + D  
Sbjct: 107 DPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 166

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K +       S +   + + L+ K    FS I    +     V   IYE+ + +F     
Sbjct: 167 KDVIPKIYAQSPLDNHDYSYLINK----FSEISFGKEHRVKDVFGRIYEYFLGKFTEVEG 222

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR +    T L++D  D       G   +++DP CG+GGF   A+  +   G
Sbjct: 223 KLGGKFYTPRSL----TKLIVDVLDV----KGG---SIFDPACGSGGFFVSALEKLEREG 271

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  I   +GQ+ +P  + +    ++IR  E D R D         +   D F    
Sbjct: 272 IDINELSI---YGQDSDPMAYRLTKMNLIIRGAEGDIRID--------DSYHDDKFMDMT 320

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F Y ++NPPF    E D + ++ +     +G     +P   + + ++++H        PN
Sbjct: 321 FDYVVANPPFNDS-EWDANRIKPDDPRLRIGNKKVPVPPNGNANYMWILHFI--YHTAPN 377

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  +A  V+++  L    AG+ E EIR+ ++ENDL+  IVA P  LF+  ++   LW + 
Sbjct: 378 G--KAGFVMANGAL---SAGNVEGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIR 432

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             K +  +GKV  INA +L+  I    +++ I+ ++  ++I+D +   E+G+
Sbjct: 433 KEKPDYMKGKVLFINAKNLYKQI---SRRQNILTEEHIKKIVDKFRMFESGE 481


>gi|313618466|gb|EFR90471.1| putatIve type i restriction enzyme hindviip m protein [Listeria
           innocua FSL S4-378]
          Length = 507

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 200/473 (42%), Gaps = 69/473 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE TG+       +WK A+ L G    +++  V+L    L+ +    E    A+ E+  
Sbjct: 1   MTENTGNIG-FEETLWKAADKLRGSMDASEYKHVVLGLIFLKYISDKFETKFDALIEEGA 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            F     + E     A   F+   E   S +      N  +  I  F D+A  + E  + 
Sbjct: 60  GFEEDRDEYE-----AENIFWVPKEARWSFIKD----NAKDPKIGQFIDDAMILIEKENT 110

Query: 121 S------STIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           S         AR E     L ++    S I+LH +   D ++  +YE+ + +F S   +G
Sbjct: 111 SLKGVLDKRYARPEIDKRRLGELIDLISTIKLHQNGEKD-LLGRVYEYFLGQFASVEGKG 169

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     ++           P   R +YDP CG+GG    +   V D   H
Sbjct: 170 GGEFYTPTSIVKTLVDMI----------EPYQGR-VYDPCCGSGGMFVQSEKFVED---H 215

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKR 291
                 L  +GQE+   T  +C   + IR L+++  P  D         T   DL    +
Sbjct: 216 QGRVENLSIYGQEMNSTTWKLCKMNLAIRGLDANLGPHHD--------DTFHHDLHKTLK 267

Query: 292 FHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             + L+NPPF    W  ++  D V          R+  G+P   + +  +L H+     L
Sbjct: 268 ADFILANPPFNISDWGGNQLTDDV----------RWKFGIPPAGNANYAWLQHMV--YHL 315

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            PNG   A IVL++  L      S E EIR+ LLE D+++AIVALP  LF+ T I   LW
Sbjct: 316 APNGS--AGIVLANGSLSTNT--SNEGEIRKNLLEEDMVDAIVALPDKLFYSTGIPVSLW 371

Query: 409 ILS-----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           IL+     N K   R  +V  I+A  L   I    ++ R + ++   +I + Y
Sbjct: 372 ILNRNKKDNPKYRSREHEVLFIDARQLGEMID---RRHRELTEEDISKISETY 421


>gi|121595901|ref|YP_987797.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607981|gb|ABM43721.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 508

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 198/460 (43%), Gaps = 55/460 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +++W  A  L G     D+ + I P    +R+    +    A     LA    +
Sbjct: 9   SQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAA----LANSKGD 64

Query: 67  IDLESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +    F      ++   + +N    +   +G+   +  + +   +  D    IF D  ++
Sbjct: 65  LSYAQFAENHRFQIPQGAHWNDVRQAPKNVGAA-IQKAMRAIETANPDLLDGIFGDAPWT 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T R
Sbjct: 124 NR-ERLPDE-TLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L 
Sbjct: 182 TVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGGEYR---TLK 228

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR---FHYCLS 297
            +GQE    T ++    + +  +E          I +G TL++     G R   F   L+
Sbjct: 229 LYGQERNLITSSIARMNLFLHGVE-------DFEIIRGDTLAEPKHIEGDRLRQFDVILA 281

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPP+  K+W ++  + +K       GR   G P        F  H+   L       GR+
Sbjct: 282 NPPYSIKQWNREAWSSDK------WGRNSLGTPPQGRADYAFQQHILTSL----TAKGRS 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT 
Sbjct: 332 AVLWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKTA 387

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            R+GKV  I+A +  T  R +      +  + +++IL  Y
Sbjct: 388 ARKGKVIFIDAVNEVTRERAQS----FLKPEHQQRILTAY 423


>gi|294502095|ref|YP_003566160.1| Type I restriction modification enzyme, M subunit [Salinibacter
           ruber M8]
 gi|294342079|emb|CBH22744.1| Type I restriction modification enzyme, M subunit [Salinibacter
           ruber M8]
          Length = 510

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 137/303 (45%), Gaps = 39/303 (12%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  + ++ S   L  + VP  ++   Y  L+R F  E  +   +F TP  +V L   L+ 
Sbjct: 143 LGALVEHLSTYNLSANNVPPDMLGEAYMDLVRHFAEEEGKEGGEFFTPPKIVRLMVCLV- 201

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
               A F    G     +DPT G+GG L +A +H  D       P  L   GQEL P+  
Sbjct: 202 ----APF----GDGDEFHDPTVGSGGMLVEAAHHYRD--EQDGEPSHLRLTGQELNPDIA 251

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKD 308
           A+    + I           +  I++  +L    FT       F Y L+N PF   W K 
Sbjct: 252 AIAKMNLFIH--------GYNGQIEREDSLGAPQFTENGQLGCFDYVLANFPFSADWPK- 302

Query: 309 KDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                 + ++   GRF     LP+   G   F+MH+AN+L    N  G+AAIV+    LF
Sbjct: 303 -----SDLQDDAYGRFDWHEKLPRADRGDYAFIMHMANQL----NATGQAAIVIPHGVLF 353

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
               G      R  +LE DL+EA++ LP +LF   +I + + +L+  K EER G+V  ++
Sbjct: 354 RKYEGR----YREPMLEGDLVEAVIGLPENLFQNNSIPSAILVLNRDKPEEREGEVLFVH 409

Query: 427 ATD 429
           A D
Sbjct: 410 AAD 412


>gi|253730780|ref|ZP_04864945.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725493|gb|EES94222.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 518

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 205/486 (42%), Gaps = 85/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  + D Q  +I+ 
Sbjct: 387 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLTDAQVERIIS 440

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 441 TYKHKE 446


>gi|225619379|ref|YP_002720605.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1]
 gi|225214198|gb|ACN82932.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1]
          Length = 500

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 166/348 (47%), Gaps = 51/348 (14%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L +I   FS I++      D ++ N+YE+ + +F +   +   +F TP  +V L   +L 
Sbjct: 130 LGEIIDLFSNIKIANKNKKD-ILGNVYEYFLSQFATAEGKRGGEFYTPSPIVKLLVEIL- 187

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   +    +H +    +  +GQE  P T 
Sbjct: 188 ---------EPYKGR-IYDPCCGSGGMFVQSAKFLE---AHSESVNNISVYGQESNPTTW 234

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDA 311
            +C   + I  ++ +    L KN     T  +DL    +  Y L+NPPF    W    DA
Sbjct: 235 KLCNMNVAIHGIDGN----LGKN--NADTFFEDLHKNLKADYILANPPFNMSDW--GADA 286

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++ ++      R+  G+P   + +  +L H+A+KL    +  G+A +VL++  L      
Sbjct: 287 LKDDY------RWKWGIPPNGNANYGWLSHIASKL----SESGKAGVVLANGSL--STQT 334

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           SGE  IR+ ++++DLIE I++LPT LF  T I   LW L+  K ++++G +  I+A +  
Sbjct: 335 SGEGLIRQNMIKDDLIECIISLPTQLFISTQIPVSLWFLN--KDKKQKGHILFIDARNYG 392

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
              R E + +R+++DD    I     S + GK          GY+ IK
Sbjct: 393 ---RMESRVQRVLDDDDIEAIAKTVHSWQKGK----------GYKDIK 427


>gi|121595902|ref|YP_987798.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607982|gb|ABM43722.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 500

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 203/463 (43%), Gaps = 54/463 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECALEPTRSAVREKY 59
           T + + L + +W++A  L G     DF   I P    +R+     E   E       E+ 
Sbjct: 7   TITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDETGDEQL 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             F  S+       ++     +N      S +G+   R   E   A+  D    +F D  
Sbjct: 67  AWFPESH-----RFQIPEDCHWNDVRTKASNVGTALQRAMREIEKAN-PDTLYGVFGDAQ 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A +F T
Sbjct: 121 WSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNKKAGEFYT 178

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L DP +A          T+YDP CGTGG L  A+ HV +   H  +  +
Sbjct: 179 PRSVVRLMIDML-DPKEA---------ETIYDPACGTGGMLLAAVQHVKE--QHGDVKRL 226

Query: 240 LVP-HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
               +GQE    T ++    + +  +E          + +G TL    F        F  
Sbjct: 227 WGKLYGQEKNLTTSSIARMNLFLHGIED-------FQVVRGDTLRNPAFFEVDRLATFDC 279

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF  +KW +D         N   GR   GLP  S G   ++ H+   +    +  
Sbjct: 280 VIANPPFSLEKWGEDL------WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---ADVS 330

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A+VL    LF  R G  E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L  R
Sbjct: 331 GRMAVVLPQGALF--RKGV-EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACILVLRKR 387

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           K  + + KV + +A+ L+      G+ +  +  +   +IL  Y
Sbjct: 388 KPVKHKKKVLIADASRLF----RRGRAQNYLEPEHAAEILGWY 426


>gi|146295062|ref|YP_001185486.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566752|gb|ABP77687.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 505

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 192/444 (43%), Gaps = 55/444 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDL 69
           L + +W  AE L G    +D+ + I P    +RL +  LE    A     L     + + 
Sbjct: 9   LEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEA-----LEIHEGDAEY 63

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN---AKAIFEDFDFSSTIAR 126
            +      +     + +      S N    +++ +     N      +F D  +++   R
Sbjct: 64  AAMPMFHRFDIPKEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWTNK-ER 122

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R VVHL
Sbjct: 123 LPDH-LLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNRTVVHL 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP------IL 240
            T ++           PG   T YDPTCGTGG L   +N V D  +H +          +
Sbjct: 182 MTRIM--------GLKPG--ETAYDPTCGTGGML---LNAVMDLRTHGEPSADQQQWRTV 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE+   T A+    M +  +E         ++ +G TL+   F      K+F    
Sbjct: 229 HLYGQEVNLLTSAIARMNMFLHDIEE-------FDVLRGDTLADPKFIENDQLKQFDVIF 281

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPP+  KKW +DK A +        GR   G+P        F  H+   L+  P+ G R
Sbjct: 282 ANPPYSIKKWNRDKFAADP------YGRNLYGVPPQGCADYAFYTHIIKSLK--PDTG-R 332

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K 
Sbjct: 333 AAMLWPHGVLFR----DSEQSIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKP 388

Query: 416 EERRGKVQLINATDLWTSIRNEGK 439
            ER+ KV  IN  +  T  R   +
Sbjct: 389 AERKNKVLFINGVEHVTRERAHSR 412


>gi|330684125|gb|EGG95874.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis VCU121]
          Length = 518

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 162/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     ++  L+ K+  + + +  +H D   D ++ + YE LI RF
Sbjct: 136 GLFSDMDLSST--RLGNTVKDRTALIGKVMIHLAELPFVHSDMEID-MLGDAYEFLIGRF 192

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++    D L        R +YDPTCG+G  L      
Sbjct: 193 AANAGKKAGEFYTPQQVSKILAKIVTQGKDQL--------RNVYDPTCGSGSLLLR---- 240

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
               G   K+      +GQE    T+ +    ML+  +     R  + +IQ   TL    
Sbjct: 241 ---VGKETKVYRY---NGQERNNTTYNLARMNMLLHDV-----RYENFDIQNADTLENPA 289

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F  ++F   ++NPP+  KW  D    + E        +G   PK S     F+ H+ + L
Sbjct: 290 FMEEKFDAVVANPPYSAKWSADSQFNDDER----FSNYGKLAPK-SKADYAFIQHMVHYL 344

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IR++L+ E + I+A++ LP ++F+ T+I T
Sbjct: 345 D----DEGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYIDAVIGLPANIFYGTSIPT 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  E    V  I+A+  +     +GK +  + DD   QI+D Y  RE
Sbjct: 398 --CILVFKKCREANDNVVFIDASQSF----EKGKNQNHLTDDDVNQIVDTYSKRE 446


>gi|260768976|ref|ZP_05877910.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio furnissii CIP 102972]
 gi|260617006|gb|EEX42191.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio furnissii CIP 102972]
          Length = 514

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 170/363 (46%), Gaps = 48/363 (13%)

Query: 105 ASFSDNAKAIFEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A  +D+   +FE+ D  SS + +   A   L+ ++  +   I+ H +     ++ + YE+
Sbjct: 123 ADSADDFNGLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEY 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           LI +F S   + A +F TP+ V  +   L+ LD          G ++++YDPTCG+G  L
Sbjct: 183 LIGQFASGAGKKAGEFYTPQQVSKILAKLVSLD----------GNVKSVYDPTCGSGSLL 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V   GSH+     L   GQE  P T+ +    ML+  +  D       +I+   
Sbjct: 233 LRVAREV---GSHN-----LEFCGQEQNPSTYNLARMNMLMHGVRYDKF-----DIKNDD 279

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFL 339
           TL   +   KRF   ++NPPF   W     +  + H N E    +G   PK +     F+
Sbjct: 280 TLEHPMHLEKRFDAVVANPPFSANW-----SANELHLNSERFADYGKLAPK-TKADFAFV 333

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLF 398
           +H+ ++L    N  G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +F
Sbjct: 334 LHMIHQL----NETGTLAVVVPHGILFRGAA---EGHIRQHLIEKKNYLDAVIGLPAGIF 386

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T   IL  +K  +    V  I+A++ +     +GK +  + D    +I++ Y  
Sbjct: 387 FGTGIPT--CILVFKKNRKHADNVLFIDASNHF----EKGKAQNFMRDADVERIVEAYSK 440

Query: 459 REN 461
           RE+
Sbjct: 441 RES 443


>gi|323182016|gb|EFZ67427.1| type I restriction-modification system, M subunit [Escherichia coli
           1357]
          Length = 518

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 205/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++T  +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVATKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEKIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|309797883|ref|ZP_07692264.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 145-7]
 gi|308118491|gb|EFO55753.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 145-7]
          Length = 520

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 10  AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 69

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 70  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 129

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 130 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 188 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 239

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 240 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 288

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 289 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 341

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 342 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 394

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 395 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 447

Query: 461 N 461
           +
Sbjct: 448 D 448


>gi|300958237|ref|ZP_07170387.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 175-1]
 gi|300315090|gb|EFJ64874.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 175-1]
          Length = 518

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSRLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|187736904|ref|YP_001816642.1| HsdM [Escherichia coli 1520]
 gi|172051486|emb|CAP07828.1| HsdM [Escherichia coli]
          Length = 520

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 206/485 (42%), Gaps = 78/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 10  AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 69

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 70  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 129

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 130 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM- 224
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 188 YAANAGKSGGEFFTPQHVSRLIAQLAM--------HGQTSVNKIYDPAAGSGSLLLQAKK 239

Query: 225 ---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              NH+ + G            GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 240 QFDNHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L++  F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S    
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSREN 461
            S+E+
Sbjct: 444 ASKED 448


>gi|148656810|ref|YP_001277015.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148568920|gb|ABQ91065.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 523

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 200/478 (41%), Gaps = 66/478 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG----- 63
           ++L  ++W  A  + G      F   ILP   L+RL    +     + + Y   G     
Sbjct: 5   STLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFDDEIKRLSDVYGNCGLVLHL 64

Query: 64  ------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    + L  F       +    +  + TLG   T  +    +A  +   + +   
Sbjct: 65  LEQERERGQVHLVRFYIPENARWKAIRQRGVRTLGQFLT--DAVRDVARENPALQGVINM 122

Query: 118 FDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            DF++T A  R+     L K+    S   L    V   ++   YE+L+R+F     + A 
Sbjct: 123 VDFNATTAGQRIIPDDHLSKLIDVLSRHRLGLQDVEPDILGRAYEYLLRKFAEGQGQSAG 182

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-----NHVADC 230
           +F TP +V  L  A LLDP        P M  T+YDPTCG+GG L          H    
Sbjct: 183 EFYTPGEVAIL-MAQLLDP-------QPRM--TVYDPTCGSGGLLIKCHLRLLETHGVRS 232

Query: 231 GSHHKIP-PILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           G       P + P    GQE+ P T A+     +I  LE+D        I+ G T+    
Sbjct: 233 GRKFSTATPGVAPLRLFGQEINPATFAMARMNAVIHDLEAD--------IRIGDTMRHPA 284

Query: 287 FTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           F       + F    +NP + +K+  +       ++N    RF  G+P  S     +L H
Sbjct: 285 FVDAAGRLQTFDRVTANPMWNQKFPVET------YENDPYERFTLGIPPHSSADWGWLQH 338

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L    +  G+ A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +LF
Sbjct: 339 MLASL----HERGKMAVVLDTGAVSRGSGNQGSNRERDIRKAFVERDLIEAVILLPENLF 394

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + T     + +++ RK   RRG++ LINA+  +     +G+ +  + ++   +I DIY
Sbjct: 395 YNTTAPGIILVVNRRKA--RRGEILLINASQQFA----KGRPKNYLTEEHIARIADIY 446


>gi|310780626|ref|YP_003968957.1| type I restriction-modification system, M subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309749949|gb|ADO84609.1| type I restriction-modification system, M subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 513

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 167/360 (46%), Gaps = 46/360 (12%)

Query: 113 AIFEDFDFSST-IARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +FED D +ST + R   +K  L+ ++ K+   I    +     V+ + YE+LI  F S 
Sbjct: 130 GLFEDVDLTSTKLGRTVEQKNRLISEVIKHLDEINFKFEDTEMDVLGDAYEYLIGEFASG 189

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   L+      L KE    I+T+YDPTCG+G  L         
Sbjct: 190 AGKKAGEFYTPQQVSKILAKLV-----TLGKEK---IKTVYDPTCGSGSLLLRVSRE--- 238

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    +   +GQEL   T+ +    M++       ++     I+QG TL       
Sbjct: 239 -------SDVSFFYGQELNTTTYNLARMNMILH-----DKKFSDFEIEQGDTLEDPHHLD 286

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           KRF   ++NPPF  KW  ++  +  E        +G   PK +     F+ H+ ++L   
Sbjct: 287 KRFEAVVANPPFSAKWSANQTFLSDER----FSAYGKLAPK-TKADFAFVQHMIHQL--- 338

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLW 408
            +  G  A VL    LF G A   E  IR++L+ E + ++A++ LP ++F+ T+I T + 
Sbjct: 339 -DENGTMATVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTCVL 394

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
           +   +K  E    V  I+A++ +   +N+   R    D+   +I+D Y +R E  KFS +
Sbjct: 395 VF--KKCRENPENVLFIDASNYFEKAKNQNYLR----DEDVERIIDTYRNRTEIEKFSHV 448


>gi|217034273|ref|ZP_03439690.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10]
 gi|216943245|gb|EEC22710.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10]
          Length = 543

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 203/473 (42%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +           +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAKN----------N 52

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  +  ++ K + +  DF+     
Sbjct: 53  TYSEIEVPQRCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKKG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFG-KKWEK--DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K W      D+  K+  N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDSKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|300819089|ref|ZP_07099292.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 107-1]
 gi|300528389|gb|EFK49451.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 107-1]
          Length = 518

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSRLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|260776279|ref|ZP_05885174.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607502|gb|EEX33767.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
          Length = 519

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 174/364 (47%), Gaps = 50/364 (13%)

Query: 105 ASFSDNAKAIFEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A  +D+   +FE+ D  SS + +   A   L+ ++  +   I+ H +     ++ + YE+
Sbjct: 123 ADSADDFNGLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEY 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           LI +F S   + A +F TP+ V  +   L+ LD          G ++++YDPTCG+G  L
Sbjct: 183 LIGQFASGAGKKAGEFYTPQQVSKILAKLVSLD----------GNVKSVYDPTCGSGSLL 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V   GSH+     L   GQE  P T+ +    ML+  +  D       +I+   
Sbjct: 233 LRVAREV---GSHN-----LEFCGQEQNPSTYNLARMNMLMHGVRYDKF-----DIKNDD 279

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFL 339
           TL   +   +RF   ++NPPF   W     +  + H N E    +G   PK S     F+
Sbjct: 280 TLEHPMHLEQRFDAVVANPPFSANW-----SANELHLNSERFADYGKLAPK-SKADFAFV 333

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLF 398
           +H+ ++L    N  G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +F
Sbjct: 334 LHMIHQL----NETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIF 386

Query: 399 FRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F T+I T + +   NRK ++    V  I+A++ +     +GK +  + ++   +I++ Y 
Sbjct: 387 FGTSIPTCILVFKKNRKNDD---NVLFIDASNHFE----KGKAQNFMRNEDVERIVEAYR 439

Query: 458 SREN 461
            RE+
Sbjct: 440 KRES 443


>gi|18202542|sp|Q47163|T1MP_ECOLX RecName: Full=Type I restriction enzyme EcoprrI M protein;
           Short=M.EcoprrI
 gi|450688|emb|CAA53205.1| hsdM gene of EcoprrI [Escherichia coli]
          Length = 520

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 10  AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 69

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 70  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 129

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 130 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 188 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 239

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 240 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 288

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 289 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 341

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 342 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 394

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 395 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 447

Query: 461 N 461
           +
Sbjct: 448 D 448


>gi|317010094|gb|ADU80674.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori India7]
          Length = 817

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 146/626 (23%), Positives = 259/626 (41%), Gaps = 97/626 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  RS           +N  
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARS-----------NNF- 50

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 51  --SEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDP CG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTRQDKSIYDPACGSGSLLLKASSLAGKKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
           +GQE +  T A+C   M+   L +    D++K     STLS   FT      K F Y ++
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSATADIAKG--GFSTLSNPFFTTENGMLKTFDYVVA 266

Query: 298 NPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G
Sbjct: 267 NPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTG 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L    
Sbjct: 323 KGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKEN 379

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
              R+G V +I+A+      + +G K R+ + D ++ I      +E   +S+M+      
Sbjct: 380 AHARKG-VFMIDAS---KDFKKDGNKNRLRDQDVQKMIDTFNAYKEIPHYSKMVSLEEIS 435

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL------------DILKPM 522
                +  P  ++        A+ E++     L+  H++ +L             + K +
Sbjct: 436 ANDYNLNIPRYIA--------AKQESEKDLFALTNSHKASYLPKNEIKAYAPYFKVFKEL 487

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRA 571
              ++     E +     +    K L +++S  ++F  + ++AF R D         P  
Sbjct: 488 KNTLFKKSDKEGYYALKTECENIKELIIQSSEYQTFHASVLSAFDRLDLFETFNDLEPGF 547

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLE 597
           +P T +  E +    L E+E V  L+
Sbjct: 548 NPKTLI--ESVCSKVLYEFEKVEILD 571


>gi|300821375|ref|ZP_07101523.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 119-7]
 gi|331680405|ref|ZP_08381064.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
 gi|300526264|gb|EFK47333.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 119-7]
 gi|331071868|gb|EGI43204.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
          Length = 518

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|291289376|ref|YP_003517708.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Klebsiella pneumoniae]
 gi|290792337|gb|ADD63662.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Klebsiella pneumoniae]
          Length = 520

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 206/485 (42%), Gaps = 78/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 10  AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 69

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 70  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 129

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 130 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM- 224
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 188 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTSVNKIYDPAAGSGSLLLQAKK 239

Query: 225 ---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              NH+ + G            GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 240 QFDNHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L++  F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S    
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSREN 461
            S+E+
Sbjct: 444 ASKED 448


>gi|253315161|ref|ZP_04838374.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
          Length = 446

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 160/351 (45%), Gaps = 51/351 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 109 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 165

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 166 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 214

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  +  I+   TL    
Sbjct: 215 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFEIRNDDTLENPA 262

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 263 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 317

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 318 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 370

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 371 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 415


>gi|170682082|ref|YP_001744301.1| type I restriction-modification system, M subunit [Escherichia coli
           SMS-3-5]
 gi|170519800|gb|ACB17978.1| type I restriction-modification system, M subunit [Escherichia coli
           SMS-3-5]
          Length = 523

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|215489628|ref|YP_002332059.1| predicted type I restriction-modification enzyme M subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215267700|emb|CAS12158.1| predicted type I restriction-modification enzyme M subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 518

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 207/485 (42%), Gaps = 78/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L + +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGNFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM- 224
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTNVNKIYDPAAGSGSLLLQAKK 237

Query: 225 ---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              NH+ + G            GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 238 QFDNHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L++  F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S    
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSREN 461
            S+E+
Sbjct: 442 ASKED 446


>gi|238855603|ref|ZP_04645904.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|238831747|gb|EEQ24083.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
          Length = 479

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 143/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +++F S   +   +F TPR VV     ++ +P    FK       T+YDP 
Sbjct: 153 ILGRVYEYFLQKFASNEKKNGGEFYTPRSVVKTLVEMV-EP----FK------GTVYDPC 201

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H      L  +GQE  P T  +    + IR +      D +
Sbjct: 202 CGSGGMFVQSEQFVQE---HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNN 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPK 330
               Q  T + DL  G  F Y L+NPPF  KKW  EK KD            R+  G+P 
Sbjct: 253 FGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEKLKDDP----------RWKYGIPP 302

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AI
Sbjct: 303 EGNANYAWIEHIISKL----NPDGKAGFVLANGAL--STTLKEELAIRKNLLEADKIDAI 356

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  +F+ T I   LW +   K  E    RRG+   I+A +L   +    +  R  ++
Sbjct: 357 VALPDKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSN 413

Query: 447 DQRRQILDIY 456
           +  ++I D Y
Sbjct: 414 EDIKKIADTY 423


>gi|323441216|gb|EGA98897.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus O46]
          Length = 355

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 163/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 37  GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 93

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 94  AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 142

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 143 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 190

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 191 FLGTTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 245

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 246 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 298

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I++ Y  +E
Sbjct: 299 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDTQVERIINTYKGKE 347


>gi|260665337|ref|ZP_05866185.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
 gi|260560841|gb|EEX26817.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
          Length = 510

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 143/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +++F S   +   +F TPR VV     ++ +P    FK       T+YDP 
Sbjct: 153 ILGRVYEYFLQKFASNEKKNGGEFYTPRSVVKTLVEMV-EP----FK------GTVYDPC 201

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H      L  +GQE  P T  +    + IR +      D +
Sbjct: 202 CGSGGMFVQSEQFVQE---HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNN 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPK 330
               Q  T + DL  G  F Y L+NPPF  KKW  EK KD            R+  G+P 
Sbjct: 253 FGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEKLKDDP----------RWKYGIPP 302

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AI
Sbjct: 303 EGNANYAWIEHIISKL----NPDGKAGFVLANGAL--STTLKEELAIRKNLLEADKIDAI 356

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  +F+ T I   LW +   K  E    RRG+   I+A +L   +    +  R  ++
Sbjct: 357 VALPDKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSN 413

Query: 447 DQRRQILDIY 456
           +  ++I D Y
Sbjct: 414 EDIKKIADTY 423


>gi|323935282|gb|EGB31635.1| N-6 DNA methylase [Escherichia coli E1520]
          Length = 539

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 192/448 (42%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F 
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +   +T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPANTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  E         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTEDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+G+   I+A +L T I    K+
Sbjct: 399 KGYRDRQGETLFIDARNLGTMISRTTKE 426


>gi|307824515|ref|ZP_07654740.1| type I restriction-modification system, M subunit [Methylobacter
           tundripaludum SV96]
 gi|307734499|gb|EFO05351.1| type I restriction-modification system, M subunit [Methylobacter
           tundripaludum SV96]
          Length = 818

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 155/325 (47%), Gaps = 46/325 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++   D     ++     T+YD
Sbjct: 135 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAQIIGIRDACTTNDT-----TVYD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L    +      +H K+      +GQE +  T  +    M+   L  +P   
Sbjct: 190 PACGSGSLLLKVGDE-----AHAKV----TLYGQEKDAATSGLARMNMI---LHDNP--- 234

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
            +  I+QG+TL+  LFT      K F Y ++NPPF  K+W    D +   H+     RF 
Sbjct: 235 -TALIKQGNTLANPLFTSDDGQLKTFDYVVANPPFSDKRWSTGIDPLNDPHR-----RFH 288

Query: 326 P-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P    G   +L+H+   L+      G+ A +L    LF G A   E++IR+ L+  
Sbjct: 289 DFGTPPDKQGDYAYLLHIVRSLK----STGKGACILPHGVLFRGNA---EADIRKNLIRK 341

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP +LF+ T I   + ++       R+G + +I+A+  +     +G K R+ 
Sbjct: 342 GYIKGIIGLPANLFYGTGIPACIIVIDKENAHTRKG-IFMIDASSGYI---KDGNKNRLR 397

Query: 445 NDDQRRQILDIYVSR-ENGKFSRML 468
           + D  R I+D++  R E  K+SRM+
Sbjct: 398 DMDIHR-IVDVFNKRLEVAKYSRMV 421


>gi|294624818|ref|ZP_06703478.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600882|gb|EFF44959.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 536

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 219/480 (45%), Gaps = 100/480 (20%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----------REKYLA 61
           A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+          +++YLA
Sbjct: 34  ADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAEDPQAAEDKDEYLA 93

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFD- 119
               NI            F+   +   S L +    N  +S I +  D+A +AI +D + 
Sbjct: 94  ---ENI------------FWVPKQARWSHLQA----NAKQSSIGTLIDDALRAIEKDNES 134

Query: 120 ----FSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVS 171
                    AR  L K  +L ++    SGI L+      + V+  +YE+ + +F G+E  
Sbjct: 135 LKGVLPKDYARPALNKV-MLGELIDLISGIALNDKGAKSKDVLGRVYEYFLGQFAGAEGK 193

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            G E F TPR VVH    ++           P   R +YDP CG+GG    +   V + G
Sbjct: 194 RGGE-FYTPRSVVHTLVEMI----------EPYKGR-IYDPCCGSGGMFVQSEKFVNEHG 241

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +I  I + +GQE    T  +C   + +R ++SD R +      +GS   KD     +
Sbjct: 242 G--RIGDIAI-YGQESNYTTWRLCKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLK 292

Query: 292 FHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             + L+NPPF    W  E+ +D V          R+  G P + + +  +L H+ +   L
Sbjct: 293 ADFILANPPFNISDWGGERLRDDV----------RWAFGPPPLGNANYAWLQHIVH--HL 340

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            P+G   A +VL++  + + +  SGE +IR+ ++E   ++ +VALP  LF+ T I   LW
Sbjct: 341 SPHG--VAGVVLANGSMSSQQ--SGEGDIRKAMIEAGAVDCMVALPGQLFYSTQIPACLW 396

Query: 409 ILS---------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           IL+           K  +RRG++  I+A       RN G     + D  RR++ D  V+R
Sbjct: 397 ILAKDRSNGLVLKSKLRDRRGEILFIDA-------RNMGA----LVDRTRRELSDAEVAR 445


>gi|134045655|ref|YP_001097141.1| type I restriction-modification system, M subunit [Methanococcus
           maripaludis C5]
 gi|132663280|gb|ABO34926.1| type I restriction-modification system, M subunit [Methanococcus
           maripaludis C5]
          Length = 494

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 173/390 (44%), Gaps = 52/390 (13%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFEDFDFSSTI---ARLEKAGLLYK 135
           T EY      + N    + S +    ++ KA    +F + DF+S        E+  LL  
Sbjct: 79  TFEYIYKNRNAENLGEIINSALERIEEDNKAKLEGVFRNIDFNSEAMLGKTKERNALLKH 138

Query: 136 ICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +  +F+   ++L P  +  + V+ + YE++I  F S+  +   +F TP  V  L   L+ 
Sbjct: 139 LLDDFNDPKLDLRPSKLAGNDVIGDSYEYMIAYFASDAGKKGGEFFTPSQVSRLVAKLV- 197

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                    SP     +YDPTCG+G  L  A   V D  ++ +I      +GQE   +T+
Sbjct: 198 ---------SPKSGNRIYDPTCGSGSLLIKASKEVPD--NNFQI------YGQEKNGQTY 240

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDA 311
           A+C   M +  ++ D + +    I+    L  D     +F   ++NPPF   KW  D   
Sbjct: 241 ALCRMNMFLHEID-DAKIEWGDTIRNPLHLENDSLM--KFDVVVANPPFSLDKWGDDY-- 295

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                +N    RFG G+P  S G   F+ H+        N  G   +VL    LF G   
Sbjct: 296 ----AENDPYKRFGYGIPPKSKGDYAFVEHMV----YSANENGTVGVVLPHGVLFRG--- 344

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + E +IR  L+ ++ ++A++ LP +LFF T I   + +    K       V  I+A+  +
Sbjct: 345 ASEGKIREGLINDNYLDAVIGLPQNLFFGTGIPACILVFKKNKI---TNDVIFIDASKEF 401

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            S    GK + ++ D    +I++ Y +R++
Sbjct: 402 ES----GKNQNVLRDLDIEKIVETYKNRQD 427


>gi|38423944|dbj|BAD02152.1| slr6095 [Synechocystis sp. PCC 6803]
          Length = 477

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 138/290 (47%), Gaps = 41/290 (14%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L+ D V   ++   YE+LI  F     +   +F TPRDVV L   L+        K + G
Sbjct: 118 LNEDFVFPDLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQLMVRLV--------KPAAG 169

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-- 262
           M  ++YDP  G+GG L  A  ++ +CG   +   +    GQ+      A+C   ML+   
Sbjct: 170 M--SIYDPCVGSGGMLIQAKQYIEECGGDSRNLSLC---GQDNNGGVWAICKINMLLHGI 224

Query: 263 ---RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              R+E++      ++I  G          +RF   LSNPPF + +EK     +    +G
Sbjct: 225 KDARIENEDTLQNPRHIVDGEL--------ERFDRVLSNPPFSQNYEKTNLEFKNRFNHG 276

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               + P   K +D  ++F  H+ + L++    GG  A V+    LF G     E +IR+
Sbjct: 277 ----WCPESGKKAD--LMFAQHMLSVLKV----GGIVATVMPHGVLFRG---GDEQKIRK 323

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWIL--SNRKTEERRGKVQLINA 427
            L+E D IEAI+ LP +LF+ T I   + ++  +  K  ERRGKV  INA
Sbjct: 324 SLIEKDQIEAIIGLPPNLFYGTGIPACILVMRRAGEKLPERRGKVLFINA 373


>gi|313112144|ref|ZP_07797925.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa
           39016]
 gi|310884427|gb|EFQ43021.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa
           39016]
          Length = 507

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 173/374 (46%), Gaps = 55/374 (14%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMS-- 156
           E+      D  K++F+D  F++     EK    +L  + ++F+  EL  D  P RV S  
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTDKLGEEKQKNTILRHLLEDFAREEL--DLKPSRVGSLD 164

Query: 157 ---NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   ++ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSEL-IAELLDP-------QPG--DSICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+   L      V +   HH      + +GQE    T ++    M +   ++       
Sbjct: 215 CGSASLLMKCGRKVRE---HHNSKQYAL-YGQEAIGSTWSLAKMNMFLHGEDN------- 263

Query: 274 KNIQQGSTLS--KDLFTGK---RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             I+ G TL   K L T     +F    +NPPF   KW  D    E EH   + GRF  G
Sbjct: 264 HKIEWGDTLRNPKLLDTNGQLLKFDIVTANPPFSLDKWGHD----EAEHD--QFGRFKRG 317

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  + G   F++H+   L+      GR A+++    LF G   S E +IR+ L+E +L+
Sbjct: 318 IPPKTKGDFAFILHMIETLKAKT---GRMAVIVPHGVLFRG---SSEGKIRQKLIEENLL 371

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP  LF+ T I   + + S  KT+E    V  I+A+  + S    GK + ++ ++
Sbjct: 372 DAVIGLPEKLFYGTGIPAAILVFSKAKTDE---NVLFIDASRDFKS----GKNQNVLGEE 424

Query: 448 QRRQILDIYVSREN 461
           Q   IL  Y  R N
Sbjct: 425 QINNILLTYRHRIN 438


>gi|49484057|ref|YP_041281.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242186|emb|CAG40888.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|315195725|gb|EFU26112.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 518

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 51/351 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 136 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 192

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 193 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 241

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 242 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 289

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 290 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 344

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
               +  G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 345 ----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 398 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 442


>gi|124008339|ref|ZP_01693034.1| type I restriction-modification system M subunit [Microscilla
           marina ATCC 23134]
 gi|123986128|gb|EAY25964.1| type I restriction-modification system M subunit [Microscilla
           marina ATCC 23134]
          Length = 524

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 209/487 (42%), Gaps = 82/487 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W +A+ L G    +DF   I     L+R     E   +   +K  +    + + 
Sbjct: 8   TLEGWLWDSADILRGSTDSSDFKNYIFGLLFLKRSNDVFEEEVAQKMDKE-SLSREDAEE 66

Query: 70  ESFVKVA-----GYSFYNTSEYSLS---TLGSTNTRN-NLESYIASFSDNAKAIFEDFDF 120
           E + K+       Y    T    ++     G+    N +LE  + +     K +  +   
Sbjct: 67  EVYFKMPPEARWQYLIEQTENIGIALDKAFGAIERENQSLEGVMTAIKFGDKEVLSN--- 123

Query: 121 SSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                      +L ++ ++F+   L   D     ++ + YE+LI++F  +  +   +F T
Sbjct: 124 ----------EVLQRLLRHFNKHSLQNKDLESGDLLGDAYEYLIKQFADDAGKKGGEFYT 173

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV+L   L+        K  PG    +YDPTCG+GG L ++  +VA+     K   +
Sbjct: 174 PRGVVNLIVRLI--------KPQPG--HRVYDPTCGSGGMLIESARYVANQPEGIKGGVV 223

Query: 240 -LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG-KRFH 293
            +   GQE    T A+    M++   ES        ++Q+G TL+     D   G + F 
Sbjct: 224 DIALFGQEKNLSTWAIGKLNMILHNFES-------ADLQKGDTLTNPRHADAQKGLQVFD 276

Query: 294 YCLSNPPFG-KKW---------------EKDKDAVEK--------EHKNGELGRFGPGLP 329
             ++NPPF    W               ++  DA +K        +  +   GR   G+P
Sbjct: 277 RVIANPPFSMNGWWTPAENAAEEENNDQDRTPDAKKKKKKTPNYAKEVSDPFGRLVYGVP 336

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 + FL H+   L       G+A +VL    LF  R GS E +IR+ LL+ DL+E 
Sbjct: 337 PRGYADLAFLQHMLASLR----QDGKAGVVLPHGTLF--RGGS-EGKIRQALLQADLVEG 389

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV LP+ LF+ T I   +W+L+  K   ++G+V ++ A+  +     EGKK+  + D   
Sbjct: 390 IVGLPSALFYNTGIPAAIWLLNKDKNPAQKGRVAIVEASRDY----QEGKKQNQLLDTHI 445

Query: 450 RQILDIY 456
            +I+  Y
Sbjct: 446 DKIVKAY 452


>gi|317178238|dbj|BAJ56027.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 820

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 205/473 (43%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   IL    L+ +    +  R+  +           +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYILNLLFLKYIS---DKARNDAKN----------N 52

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 53  TYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS  LF      + F Y ++N
Sbjct: 216 YGQEKDISTTALCRMNMI---LHNSADADIAKG--GSSTLSNPLFIKNGMLQAFDYVVAN 270

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 HARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|126173066|ref|YP_001049215.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125996271|gb|ABN60346.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 515

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 205/491 (41%), Gaps = 72/491 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG---- 64
           A L   IW  A ++ G     DF + +L     R +    E   +   E  + + G    
Sbjct: 8   AELQRQIWAIANEVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDES-INYAGMFDD 66

Query: 65  -SNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI    E  +K  GY  Y +  +S +   + N   NL + +A+               
Sbjct: 67  DENIKFAKEDAIKTKGYFLYPSQLFS-NVAANANKNENLNTDLAAIFAAIENSANGYDSE 125

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
            + K +F DFD +S   RL      K   L  + K  +G+ +   +   + +  + YE L
Sbjct: 126 KDIKGLFADFDTTSN--RLGNTVEAKNKRLAAVLKGVAGLNITQFEDNENDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H       H I       GQEL   T+ +    M +  +  D       NIQ G TL
Sbjct: 236 AKKHF----DAHIIEEGFF--GQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 284

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            +  F   K F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 285 IEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFV 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALNYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +LS  KT+      Q I+A++L+    N       ++++   QI+ ++ S+
Sbjct: 393 GTTIAVNILVLSKHKTDT---TTQFIDASNLFKKETN----NNTLSNEHIEQIIKVFASK 445

Query: 460 ENGK-FSRMLD 469
           EN + F++ +D
Sbjct: 446 ENVEHFAKCVD 456


>gi|288817340|ref|YP_003431687.1| type I restriction-modification system methyltransferase subunit
           [Hydrogenobacter thermophilus TK-6]
 gi|288786739|dbj|BAI68486.1| type I restriction-modification system methyltransferase subunit
           [Hydrogenobacter thermophilus TK-6]
 gi|308750947|gb|ADO44430.1| type I restriction-modification system, M subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 813

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 216/480 (45%), Gaps = 58/480 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    +++ + I     L+R+    +  R  + ++Y   G S+ ++
Sbjct: 10  ELETHLFKAADILRGKMDASEYKEYIFGMLFLKRMSDVFDEEREKLFKEYKNLGYSDEEI 69

Query: 70  ESFVK---VAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFD 119
           +  ++   +   +F+       EY L+     +  N L   +A+  +     + + +  D
Sbjct: 70  KEILEDPNIYSETFFVPEKARWEYILTL--KEDVGNQLNKALAALEEANPELEGVLKHID 127

Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F++   +   K   L  +  +F+   L  +    PD ++   YE+L++ F     +   +
Sbjct: 128 FNAVKGKTRLKDQQLIDLIHHFNKYRLRNEDFEFPD-LLGAAYEYLLKEFADSAGKKGGE 186

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V  L   L+        K   GM   +YDPT G+GGFL +A  +V + G +   
Sbjct: 187 FYTPPSVKTLMVRLV--------KPKEGM--RIYDPTVGSGGFLIEARQYVEEKGQN--- 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
           P  L  +GQE    T ++C   M++  +           I+   TL+   F      K+F
Sbjct: 234 PKNLALYGQENNGVTWSICKMNMILHGIPD-------AQIENEDTLTNPKFVENGYIKQF 286

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF + + +      +  K G    F P   K +D  ++FL H+   L+  P+G
Sbjct: 287 DIVLANPPFSQNYTRANMHFPERFKYG----FTPETGKKAD--LMFLQHMIASLK--PDG 338

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
               A V+    LF G     E  IR  ++++DLI+AI+ LP  LF+ T I   + +++ 
Sbjct: 339 --IMATVMPHGVLFRG---GQEKVIREGIVKDDLIQAIIGLPPKLFYNTGIPACIIVINK 393

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYR 471
           RK +  + K+  INA   +     EG+ +  +  +   +I+ ++ +  E  K+SR++D +
Sbjct: 394 RKPDHLKNKILFINADREY----GEGRNQNYLRPEDIEKIVTVFDNNLEIPKYSRLVDIK 449


>gi|290957396|ref|YP_003488578.1| type I restriction modification system protein [Streptomyces
           scabiei 87.22]
 gi|260646922|emb|CBG70021.1| putative type I restriction modification system protein
           [Streptomyces scabiei 87.22]
          Length = 813

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 158/324 (48%), Gaps = 50/324 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLY 210
           D ++ + YE+L+R F +E  +    F TP +V   LA  + +DP       S     T+Y
Sbjct: 138 DDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVVGIDP-------STRQDHTVY 190

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L      VAD     + P  +  +GQE +  T A+    M++   E     
Sbjct: 191 DPTCGSGSLLL----KVAD-----EAPRGITIYGQEKDNATWALAKMNMILHDNED---- 237

Query: 271 DLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
               +I +G T++   FT  R    F + ++NPPF  K W    + +E ++     GRF 
Sbjct: 238 ---ADILKGDTITNPQFTTGRQLRTFDFAVANPPFSIKSW---SNGLENDY-----GRFE 286

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   +G   FL+H+   L+      G+AAI+L    LF G A   E+ IRR LL   
Sbjct: 287 YGRPPEKNGDYAFLLHILKSLK----STGKAAIILPHGVLFRGHA---EASIRRELLRRG 339

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LF+ T I   + +L     + R G V +I+A+  +     +G K R+ +
Sbjct: 340 YIKGIIGLPANLFYGTGIPACIIVLDKENAQARTG-VFMIDASKGFI---KDGNKNRLRS 395

Query: 446 DDQRRQILDIYVSR-ENGKFSRML 468
            D  + I+D++  + E  ++SRM+
Sbjct: 396 QDIHK-IVDVFNRQVEIERYSRMV 418


>gi|317130966|ref|YP_004097248.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522]
 gi|315475914|gb|ADU32517.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522]
          Length = 488

 Score =  117 bits (292), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 186/431 (43%), Gaps = 51/431 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63
           S   L  ++W +A  L G     D+ + I P   L+RL C          E+Y   L   
Sbjct: 5   SLEKLERYLWGSANFLRGHIDAGDYKQFIFPLLFLKRL-C------DVYDEEYNDSLNTL 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           G + D      +     +N     ++ +G+       E   A+     + IF D  +++ 
Sbjct: 58  GEDFDENHRFIIPKGHHWNDIRKKVNNIGTAIQTAMAEIEKANIG-RLEGIFGDAQWTNK 116

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL  + LL  + ++FS   L    V +  +   YE+LI++F  +    A++F + R +
Sbjct: 117 -DRLPDS-LLKDLIEHFSQQTLSLQNVSEDELGQAYEYLIKKFADDSGHTAQEFYSNRTI 174

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T LL           P    ++YDPTCG+GG L  +  H+ + G  ++    L   
Sbjct: 175 VRLMTELL----------EPNPKESVYDPTCGSGGMLLLSALHLKEKGKEYRS---LRLF 221

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE+   T ++    M +  +E          I +G TL    F      ++F   L+NP
Sbjct: 222 GQEINLITSSIAKMNMFLHGIED-------FEILRGDTLENPAFIKNDKLRQFDIVLANP 274

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+  K+W +++       +    GR   G P  S     FL H+   L+      GR AI
Sbjct: 275 PYSIKRWNRER------WETDPYGRNIYGTPPKSRADYAFLQHIIKSLKADT---GRCAI 325

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E E+R  L+++D+IE I+ L ++LF+ + +   +      K E+R
Sbjct: 326 LFPHGVLFR----DAEQEMRENLVKSDVIECILGLGSNLFYNSPMEACVIFCRTNKKEDR 381

Query: 419 RGKVQLINATD 429
           +GK+  INA +
Sbjct: 382 KGKILFINAIN 392


>gi|297590647|ref|ZP_06949285.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus MN8]
 gi|297575533|gb|EFH94249.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus MN8]
          Length = 579

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 51/351 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 197 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 253

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 254 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 302

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 303 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 350

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 351 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 405

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 406 D----DEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 458

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 459 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 503


>gi|282906211|ref|ZP_06314066.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282331503|gb|EFB61017.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
          Length = 579

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 51/351 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 197 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 253

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 254 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 302

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 303 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 350

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 351 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 405

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 406 D----DEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 458

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 459 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 503


>gi|331671460|ref|ZP_08372258.1| putative type I restriction-modification system, M subunit
           [Escherichia coli TA280]
 gi|331071305|gb|EGI42662.1| putative type I restriction-modification system, M subunit
           [Escherichia coli TA280]
          Length = 539

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 191/448 (42%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F 
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+GK   I+A +L T I    K+
Sbjct: 399 KGYRDRQGKTLFIDARNLGTMISRTTKE 426


>gi|312963116|ref|ZP_07777601.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6]
 gi|311282627|gb|EFQ61223.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6]
          Length = 507

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 181/410 (44%), Gaps = 61/410 (14%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTIA 125
           E FV     SFY   E+             L    E+      D  K++F+D  F++   
Sbjct: 72  ERFVLSRDASFYTLYEHRHEPGNGERIDQALHAIEEANGTKLKDAGKSVFQDISFNTDKL 131

Query: 126 RLEKAG--LLYKICKNFSGIELHPDTVPDRVMS-----NIYEHLIRRFGSEVSEGAEDFM 178
             EK    +L  + +NF+  EL  +  P RV S     N YE+LI+ F +   + A +F 
Sbjct: 132 GEEKQKNTILRHLMENFARAEL--NLKPSRVGSLDVIGNAYEYLIKNFAASGGQKAGEFY 189

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L  A LLDP        PG   T+ DP CG+   L      V +   HH    
Sbjct: 190 TPPEVSEL-IAELLDP-------QPG--DTICDPACGSASLLMKCGRKVRE---HHSSKQ 236

Query: 239 ILVPHGQELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             + +GQE    T ++    M +      ++E  D  R+     Q G  L  D+ T    
Sbjct: 237 YAL-YGQEAIGSTWSLAKMNMFLHGEDNHKIEWGDTLRNPKLLDQNGQLLKFDIVT---- 291

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               +NPPF   KW  +    E EH     GRF  G+P  + G   F++H+   L+    
Sbjct: 292 ----ANPPFSLDKWGHE----EAEHD--PFGRFNRGIPPKAKGDFAFILHMIETLKAKT- 340

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR A+V+    LF G   S E +IR+ L+E +L++A++ LP  LF+ T I   + + S
Sbjct: 341 --GRMAVVVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFYGTGIPAAILVFS 395

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             KT+E    V  I+A+  + +    GK + ++ ++Q   IL  Y  R N
Sbjct: 396 KAKTDE---NVLFIDASRDFKA----GKNQNLLGEEQINNILLTYRHRIN 438


>gi|188528306|ref|YP_001910993.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188144546|gb|ACD48963.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 820

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 207/473 (43%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +        +N D
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAK--------NNTD 54

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
            E  ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 55  SE--IEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + LL    DA  K+     +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLLL--GIDANTKQD----KSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFG-KKWEK--DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K W    + D   K+  N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLNIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+  + L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGAIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V LI+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RARKG-VFLIDAS---KDFKKDGNKNRLREQDVQKMIDAFNALKEIPYYSKMV 432


>gi|257425924|ref|ZP_05602348.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428591|ref|ZP_05604989.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431226|ref|ZP_05607603.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433907|ref|ZP_05610265.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436823|ref|ZP_05612867.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904387|ref|ZP_06312275.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282911436|ref|ZP_06319238.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914606|ref|ZP_06322392.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924952|ref|ZP_06332618.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283958567|ref|ZP_06376018.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293503683|ref|ZP_06667530.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293510700|ref|ZP_06669405.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537241|ref|ZP_06671921.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295428388|ref|ZP_06821017.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|257271618|gb|EEV03764.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275432|gb|EEV06919.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278174|gb|EEV08822.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282000|gb|EEV12137.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284174|gb|EEV14297.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313318|gb|EFB43714.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282321787|gb|EFB52112.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325131|gb|EFB55441.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282596005|gb|EFC00969.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790716|gb|EFC29533.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920086|gb|EFD97154.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095349|gb|EFE25614.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466591|gb|EFF09112.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127788|gb|EFG57425.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|312437726|gb|ADQ76797.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 579

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 161/351 (45%), Gaps = 51/351 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 197 GLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 253

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 254 AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 302

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 303 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 350

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 351 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 405

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 406 D----DEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 458

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 459 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 503


>gi|317014951|gb|ADU82387.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori Gambia94/24]
          Length = 817

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 203/473 (42%), Gaps = 63/473 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKAKNNN 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 50  F-SEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNAKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMTDTLSNLVKIFADLSLGTHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSATADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 266

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D   ++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 267 PPFSLKNWTDGLTIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 322

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 323 GAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 379

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+ + D ++ I      +E   +S+M+
Sbjct: 380 HARKG-VFVIDAS---KDFKKDGDKNRLRDQDVQKMIDTFNAYKEIPYYSKMV 428


>gi|283458000|ref|YP_003362607.1| type I restriction-modification system methyltransferase subunit
           [Rothia mucilaginosa DY-18]
 gi|283134022|dbj|BAI64787.1| type I restriction-modification system methyltransferase subunit
           [Rothia mucilaginosa DY-18]
          Length = 569

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 211/490 (43%), Gaps = 79/490 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L + IW+ A DL G     DF + +L     R L    E     + E Y    G  ++
Sbjct: 51  AQLHSTIWRIANDLRGSVDGWDFKQYVLGMLFYRYLS---ESQARFIDENY-TLKGPFVE 106

Query: 69  L----------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----------- 107
           L          +  ++  G+ F   S+   +         NL   +A+            
Sbjct: 107 LKDEDCNEGGRQVVLRERGF-FLLPSQLFSNVYAKARQDQNLNETLANVFKAFEESARGT 165

Query: 108 --SDNAKAIFEDFDFSSTIARLEKAGL---LYKICKNFSGIEL---HPDTVPDRVMSNIY 159
              +N K +F+DF   S    +  A     L K+    +G+ L   + D+  D    + Y
Sbjct: 166 ESEENVKGLFDDFVLDSNKLGVSPAARHENLLKLMDAVAGMNLGKGYEDSEND-AFGDAY 224

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+  + +   +   ++ TP++V  L   + +D  DA        IR++YDP CG+G  
Sbjct: 225 EYLMGMYAANAGKSGGEYYTPQEVSELLAKIAMDGRDA------DKIRSVYDPACGSGSL 278

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   +    + G + K    +   GQE+   T+ +C   M++  +  D       +I  G
Sbjct: 279 L---LKFKRELGKNSKGLRFI---GQEINLTTYNLCRMNMMLHGVPVD-----EFSIAHG 327

Query: 280 STL-------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            TL        K+    + F   +SNPP+  KW+ D D   K        R+ P   L  
Sbjct: 328 DTLIDPKHRNGKNPKFVEPFGAIVSNPPYSTKWKGDDDPTLKHDD-----RYAPAGVLAP 382

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+   L    +  G AAIV     L+  R+G+ E  IR +LL  + ++A+
Sbjct: 383 KSKADLAFTMHMLKSL----HEAGTAAIVEFPGVLY--RSGA-ERTIREYLLIENRVDAV 435

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP++LF+ T+IAT + +L  +K   +   V  ++A+ L+    ++GK + I+    R 
Sbjct: 436 IQLPSNLFYGTSIATCILVL--KKGRRKDHSVLFVDASALF----DKGKNQNILGKSHRE 489

Query: 451 QILDIYVSRE 460
           +ILD+  +RE
Sbjct: 490 KILDVLATRE 499


>gi|308064292|gb|ADO06179.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Sat464]
          Length = 820

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 204/473 (43%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +           +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAKN----------N 52

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 53  TYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V LI+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RARKG-VFLIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|60680613|ref|YP_210757.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis NCTC 9343]
 gi|60492047|emb|CAH06809.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis NCTC 9343]
          Length = 890

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 47/329 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L++ F +E  +    F TP +V  L   L+      + K++   I ++YD
Sbjct: 138 DDLIGDAYEYLMKNFAAESGKKKGQFYTPAEVSRLMARLI-----GIHKDNRPQI-SIYD 191

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A    A+   H     I    GQEL+  T  + V  M +   + DP   
Sbjct: 192 PTCGSGSLLLRA---AAEYTKHRDGVSIF---GQELDGATRGMAVMNMYLHGYD-DPE-- 242

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFG 325
               ++ G T+ K  F       + F+Y ++NPPF +K W K +  +     N   GR+G
Sbjct: 243 ----LEVGDTIEKPFFKSTPNQLETFNYVVANPPFSQKGWIKGEIKI-----NDTFGRWG 293

Query: 326 -----PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                P +P I      FL+H+   +    N  GR A +L +  LF G     E  +RR 
Sbjct: 294 NSDNLPPIPPIGYEDYAFLLHIIKSI----NSQGRGACILPNGVLFRGNE---EEAVRRK 346

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           ++E   I  I++LPT+LFF T I   + I+   KT   +G + +I+A   +T    +G K
Sbjct: 347 IIEKRYIRGIISLPTNLFFGTGIPACIVIIDKAKTSTSKG-IFMIDARSGFTK---DGAK 402

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLD 469
            R+   D RR + D + + EN + +  LD
Sbjct: 403 NRLREQDIRR-VFDAWEALENLEANGNLD 430


>gi|327404778|ref|YP_004345616.1| adenine-specific DNA-methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327320286|gb|AEA44778.1| Site-specific DNA-methyltransferase (adenine-specific) [Fluviicola
           taffensis DSM 16823]
          Length = 521

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 188/421 (44%), Gaps = 61/421 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGS 65
           S+   +W +A  L G  + +++  V+L    L+      E  R  +    ++KYL     
Sbjct: 11  SIEETLWDSANKLRGTVESSEYKHVVLALIFLKFTSDKFEERRQELVAEGKDKYL----- 65

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-----SDNA--KAIFEDF 118
             ++  F  +    F+   E   S + +   +N++   I +       +NA  K    D 
Sbjct: 66  --EMPEFYNMKNV-FFLAEESRWSYIIANAKQNDISLKIDTALHTVEKNNASLKGALPDN 122

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE 175
            FS     + K   L     N        DT+ D+   ++  +YE+ + +F     +G  
Sbjct: 123 YFSRLNMDVSKLAALLDTINNI-------DTLKDKQQDIVGRVYEYFLSKFALAEGKGKG 175

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ +V+L  A +++P   +          +YDP CG+GG    +M  +    SHH 
Sbjct: 176 EFYTPKSIVNL-IAEMIEPYKGV----------IYDPACGSGGMFVQSMKFIQ---SHHG 221

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T+ +    + IR + ++             T +KD     +  + 
Sbjct: 222 NTKDISIYGQEYTNTTYKLAKMNLAIRGISANL------GAVAADTFAKDQHPDLKADFI 275

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF +K  +  D +  + +       G  LP  S+ +  +++++A+KL    +  G 
Sbjct: 276 MANPPFNQKDWRASDELTDDPRWK-----GYDLPPTSNANYAWILNMASKL----SENGV 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  +L++  L     G  E +IR+ L+EN ++EA+V LP  +F+ T+I+  LWIL+N KT
Sbjct: 327 AGFILANGAL---SGGGEEYKIRKKLIENGVVEAVVILPRSMFYTTDISVTLWILNNNKT 383

Query: 416 E 416
           E
Sbjct: 384 E 384


>gi|227892231|ref|ZP_04010036.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
 gi|227865953|gb|EEJ73374.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
          Length = 506

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 202/458 (44%), Gaps = 68/458 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----------EKYLAFG 63
           +W+ A+ L G    +++  V+L    L+ +  + E  R  +            + YLA  
Sbjct: 14  LWQAADKLRGSMDESEYRNVVLGLIFLKYVSDSFEEKRDEILNSDYPEEVEEPDAYLA-- 71

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 E+   V   + ++  + +  T       +N    I   +++ + +      S  
Sbjct: 72  ------ENIFWVPKEARWSVIQKAAKTPQVGEIIDNAMDAIEKNNNSLRGVLNKNYASPD 125

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I +    G++  +    S I L  D   D ++  +YE+ + +FGS  + G  +F TP+ +
Sbjct: 126 IDKTRLGGVVDLV----SNISLKGDGKLD-LLGRVYEYFLNKFGSGKTGG--EFYTPQSI 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V     ++           P   R +YDP CG+GG    +   V +   H      L  +
Sbjct: 179 VKTLVEMI----------EPYRGR-IYDPCCGSGGMFVQSGKFVQE---HQGRIGDLSIY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG- 302
           G+E  P T  +    + IRR++++  +       QG T + DL  G+RF + L+NPPF  
Sbjct: 225 GEESNPTTWKLAKMNLAIRRIDNNLGQ------YQGDTFTNDLHKGERFDFILANPPFNI 278

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K W  +K          E  R+  G+P + + +  ++ H+ +KL   P+G  +A  VL++
Sbjct: 279 KDWSGEKLR--------EDARWKYGVPPVGNANYAWIQHIISKL--TPDG--KAGFVLAN 326

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----R 418
             L    +   E  IR+ ++E+D I+AIVA+P  +F+ T I   LW +   K+ +    R
Sbjct: 327 GAL--STSTKEEYAIRKAIIEDDKIDAIVAIPDKMFYTTGIPASLWFIDMDKSSDDERKR 384

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            G+   I+A +L   +    +  R  +D+  ++I D Y
Sbjct: 385 NGETLFIDARELGEML---DRTHRGFSDEDIKKIADTY 419


>gi|323971897|gb|EGB67121.1| type I restriction-modification system [Escherichia coli TA007]
          Length = 518

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 207/485 (42%), Gaps = 78/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L  G 
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSICYAALDDGI 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  ++  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIRTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM- 224
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSRLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 225 ---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              NH+ + G            GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 238 QFDNHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L++  F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S    
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEKIMQVF 441

Query: 457 VSREN 461
            S+E+
Sbjct: 442 SSKED 446


>gi|164688031|ref|ZP_02212059.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM
           16795]
 gi|164602444|gb|EDQ95909.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM
           16795]
          Length = 524

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 166/360 (46%), Gaps = 48/360 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            D  + +F+D D SST    +   ++ L+ KI      IE   D     V+ + YE+LI 
Sbjct: 131 QDAFEGLFDDMDLSSTKLGKDVSTRSKLMAKIISAIDSIEFGIDETSIDVLGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPTCGTGGFLTD 222
           +F +   + A +F T      L   L           + G+   L   DPTCG+G  L  
Sbjct: 191 QFAANAGKKAGEFYTATGPAELLCRLT----------TIGLTDVLSAADPTCGSGSLLL- 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
            +N  A+  +           GQEL   T+ +    M++  +   P ++ +  I  G TL
Sbjct: 240 RLNKYANVRTFF---------GQELTSTTYNLARMNMILHGV---PYQNFT--IYNGDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +D F   +F   ++NPP+  KW  DK   E++ +    G+  P     S     FL H+
Sbjct: 286 EEDHFEENKFRIQVANPPYSAKWSADK-RFEQDERFSVYGKLAPK----SKADFAFLQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRT 401
              +    +  GR AI+L    LF G A   E +IRR+++ E + ++A++ LP +LFF T
Sbjct: 341 IYHM----DDDGRIAILLPHGVLFRGAA---EEKIRRYIIEEQNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I   + +L   +  + +  +  I+A+  + S +N+ + RR    +   +I+D Y+ RE+
Sbjct: 394 SIPVCILVLKKDRA-DNKDNIFFIDASKEFESGKNQNRLRR----EDINKIVDTYIKRED 448


>gi|160902533|ref|YP_001568114.1| type I restriction-modification system, M subunit [Petrotoga
           mobilis SJ95]
 gi|160360177|gb|ABX31791.1| type I restriction-modification system, M subunit [Petrotoga
           mobilis SJ95]
          Length = 815

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 218/477 (45%), Gaps = 56/477 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G+   +++ + I     L+R     E ++  +R K+ A   ++  +
Sbjct: 10  QLETHLFKAADILRGNMDASEYKEYIFGMLFLKRASDVFEVSKEKLRNKFKAQSFTDEQI 69

Query: 70  ESFVK---VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAI-----FEDFD 119
              ++   +   +F+   +     + +   +  N+L   +A+  +  + +     + DF+
Sbjct: 70  NELLEDPDLYWDTFFVPEKARWRNILTLKEDVGNHLNKALAALEEANRELDGVLKYIDFN 129

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                 RL K+  L  +  +F+   L  +    PD ++   YE+L++ F     +   +F
Sbjct: 130 AIKGKTRL-KSQQLIDLIHHFNKYRLTNEDFEFPD-LLGAAYEYLLKEFADSAGKKGGEF 187

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V  L   L+        K   GM  T+YDPT G+GGFL ++ +++ + G     P
Sbjct: 188 YTPTYVKKLMVRLV--------KPQEGM--TIYDPTVGSGGFLIESRHYIEEQGQD---P 234

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFH 293
             +  +GQEL   T ++C   M++  + SD       +I+   TL+  +F      + F 
Sbjct: 235 INIALYGQELNGLTWSICKMNMILHGI-SDA------HIENEDTLTTPMFVENGYIRHFD 287

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPF + + +     ++  K G    F P   K +D  ++FL H+   L    N  
Sbjct: 288 RVLANPPFSQNYTRTNMQFQERFKYG----FTPETGKKAD--LMFLQHMIASL----NDN 337

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G  A V+    LF G     E  IR  ++ ++LIEAI+ LP+ LF+   I   + +++  
Sbjct: 338 GVMATVMPHGVLFRG---GQEKVIREGIVRDNLIEAIIGLPSKLFYNVGIPACVIVINKN 394

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
           K E  + K+  INA   +     EG+ +  +  +   +I+ ++  +++  K+SR++D
Sbjct: 395 KPEHMKDKILFINADREY----GEGRNQNYLRPEDIEKIVTVFDEKKDIPKYSRIVD 447


>gi|317179715|dbj|BAJ57503.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 817

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 204/473 (43%), Gaps = 63/473 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKARN-N 48

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
            +S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 49  TDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAIIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 266

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 267 PPFSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 322

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 323 GAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 379

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 380 CTRKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 428


>gi|238787647|ref|ZP_04631445.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii
           ATCC 33641]
 gi|238724434|gb|EEQ16076.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii
           ATCC 33641]
          Length = 526

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 168/376 (44%), Gaps = 57/376 (15%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K  +G++    T     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVAGLDFGDFTASHIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPACGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H       H I       GQE+   T+ +    M +  +  D       NIQ G+TL++ 
Sbjct: 238 HF----DAHVIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNTLTEP 286

Query: 286 LF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F   K F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+ 
Sbjct: 340 HALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR-----RQILDI 455
           T IA  + +L+  KTE      Q I+A+ L+    N        NDD++     +QI+ +
Sbjct: 393 TTIAVNILVLAKNKTET---TTQFIDASGLFKKETNNNVLTD--NDDEKNLGHIQQIMRV 447

Query: 456 YVSREN-GKFSRMLDY 470
           + S+EN   F+R + Y
Sbjct: 448 FASKENVDHFARSVPY 463


>gi|319901495|ref|YP_004161223.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
 gi|319416526|gb|ADV43637.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
          Length = 783

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 144/320 (45%), Gaps = 46/320 (14%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           T  D ++ + YE+L++ F +E  +    F TP +V  +   +L         E      T
Sbjct: 134 TADDDILGDAYEYLMKNFAAESGKSKGQFYTPAEVSRVMAKMLH------LTEFTSPSTT 187

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L  A+            P    P+GQE +  T ++ +  ML+  +++  
Sbjct: 188 IYDPTCGSGSLLLRAIGET---------PNGATPYGQEKDNSTASLAILNMLLHGVDT-- 236

Query: 269 RRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKW--EKDKDAVEKEHKNGEL 321
                  I+QG T++   FT     K F  C++NPPF  K W     KD         EL
Sbjct: 237 -----ATIEQGDTINSPEFTEGGQLKTFDVCVANPPFSTKSWLGAAGKDDAVYHRWTAEL 291

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                  P    G   FL+HL   ++    G GR A +L    LF G A   E EIR+ +
Sbjct: 292 ------CPPDKCGDYAFLLHLIASMK---PGTGRGACILPHGVLFRGNA---EYEIRKHI 339

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +    IE IV LP ++FF T I   + IL N++    R  +  ++A D +     +G K 
Sbjct: 340 IRQGWIEGIVGLPANIFFGTGIPASI-ILINKQGAANRKGIFFVDAKDGFV---KDGNKN 395

Query: 442 RIINDDQRRQILDIYVSREN 461
           R+   D +R I+D + +R +
Sbjct: 396 RLREQDIKR-IVDTWNARHD 414


>gi|226940929|ref|YP_002796003.1| HsdM [Laribacter hongkongensis HLHK9]
 gi|226715856|gb|ACO74994.1| HsdM [Laribacter hongkongensis HLHK9]
          Length = 283

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 11/174 (6%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++AGLLY + + F+ I+LHP +V +  M  ++E LIR+F    +E A +  TPR+V+ L 
Sbjct: 120 DRAGLLYLVTEKFANIDLHPASVDNASMGLVFEELIRKFAEISNETAGEHFTPREVIRLM 179

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL   DD +      ++RTLYDPT GTGG L+ A   +A+    H     L   GQEL
Sbjct: 180 VNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVAGEFLAE----HNPQARLTLFGQEL 235

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             E++A+C A MLI+       +D+  NI  G+TLS D    ++F Y L + P+
Sbjct: 236 NDESYAICKADMLIK------GQDVG-NIVAGNTLSDDGHGARKFDYMLCSAPW 282


>gi|78777140|ref|YP_393455.1| Type I restriction-modification system M subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497680|gb|ABB44220.1| Type I restriction-modification system M subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 495

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 199/469 (42%), Gaps = 63/469 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + +++ N +WK  +   G    +D+   +L    ++ L    +     ++ +Y   G   
Sbjct: 5   TQSTINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLDLLKAEY---GDKT 61

Query: 67  IDLESFVKVAGYSF-------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             +E+ +K   +         Y         LG    +  LE       D  + IF   D
Sbjct: 62  DRIEAKLKREKFRLDESCTFDYLIKHKEAPNLGEIMNKV-LERIEEDNRDKLEGIFRSID 120

Query: 120 FSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDR-----VMSNIYEHLIRRFGSEVS 171
           F++        E+  +L  + ++FS   L  D  P R     V+ + YE+LI  F S+  
Sbjct: 121 FNNKNKLGDTKERNTILKNLIEDFSDTRL--DLRPSRLEGNDVIGDAYEYLISHFASDAG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +V  L  A L++P +            +YDPTCG+G  L  A   +   G
Sbjct: 179 KKGGEFYTPSEVSTLL-AKLVEPKEG---------EMIYDPTCGSGSLLIKASKEI---G 225

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S +        +GQE   +T A+C   M +  + +D   +    I+    L  +L   K 
Sbjct: 226 SKN-----FRLYGQEKNGQTQALCKMNMFLHEI-NDAVIEWGDTIRNPLHLQDNLL--KT 277

Query: 292 FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   ++NPPF   KW       E+   +   GRF  G P  S G   F++H+ + L    
Sbjct: 278 FDVVVANPPFSLDKWG------EEIASDDSFGRFKYGTPPKSKGDYAFVLHMISSL---- 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  G+  ++L    LF G   + E +IR  L+E +L++ ++ LP++LFF T+I   + I 
Sbjct: 328 NSHGKMGVILPHGVLFRG---ASEGKIREKLIEQNLLDTVIGLPSNLFFGTSIPACILIF 384

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +       +  I+A+  +     +GK +  + D+   +I D Y +R
Sbjct: 385 KKNRV---HNDILFIDASREF----EKGKNQNNLTDEHIAKIFDTYKNR 426


>gi|325107544|ref|YP_004268612.1| type I restriction-modification system, M subunit [Planctomyces
           brasiliensis DSM 5305]
 gi|324967812|gb|ADY58590.1| type I restriction-modification system, M subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 510

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 166/358 (46%), Gaps = 48/358 (13%)

Query: 112 KAIFEDFDFSS--TIARL-EKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRR 165
           + +F + DF+S  T+ +  E+   L  + ++FS   ++L P  V +  V+ + YE+LI R
Sbjct: 126 EGVFRNIDFNSESTLGQTRERNVRLKSLLEDFSDPKLDLRPSRVGNLDVIGDAYEYLIGR 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP +V  L  A L+DP        PG    + DP CG+G  L     
Sbjct: 186 FASNAGKKAGEFYTPPEVSEL-IARLVDP-------QPG--ERICDPACGSGSLLIK--- 232

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
               CG         + +GQE    T A+    M +  ++ + R +    I+    LS D
Sbjct: 233 ----CGQKVGTNDFSL-YGQENNGSTWALAKMNMFLHAMD-NARIEWGDTIRNPRLLSDD 286

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                RF   ++NPPF   KW ++      +H N    RF  G+P  + G + F+ H+  
Sbjct: 287 RLM--RFEVVVANPPFSLDKWGQED--ARSDHYN----RFHRGVPPKNKGDLAFISHMVE 338

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            + +     GR A+V     LF GRA   E  IR+  ++ DL++AI+ LP DLF+ T +A
Sbjct: 339 TITVE---SGRIAVVAPHGVLFRGRA---EGSIRKQFVDEDLLDAIIGLPPDLFYGTELA 392

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-----RIINDDQRRQILDIYV 457
             + +    +   R GKV  I+A+  +   +   + R     RI+     R+ +D Y 
Sbjct: 393 AAILVF---RRSNRDGKVLFIDASQEYADCKGHNRLRKQDIERIVAAYSEREFIDKYA 447


>gi|294495710|ref|YP_003542203.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219]
 gi|292666709|gb|ADE36558.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219]
          Length = 499

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 192/436 (44%), Gaps = 56/436 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL--------ECALEPTRSAVREK 58
           S   L  ++W  A  L G     ++  +I P    +R+        + ALE   S   ++
Sbjct: 6   SQQQLEQYLWGAATLLRGVIDPGEYKSIIFPLMFFKRISDVYDEEYQQALE--ESGGDQE 63

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y  F  ++     F   AG  + +    S++   +  T   ++    +  D    IF D 
Sbjct: 64  YAEFAENH----RFQVPAGAHWNDVRNVSINVGQAIKTA--MDDIEKANPDKLTGIFGDA 117

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           ++++   RL    +L  + ++FS + L    VP     + YE+LI++F  +    A +F 
Sbjct: 118 NWTNK-NRLSD-NILIDLIEHFSTVNLSITNVPQDEFGSGYEYLIKKFADDSGHTAAEFY 175

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L + L++DP             ++YDPTCG+GG L +A     + G  ++   
Sbjct: 176 TNRTVVRLMS-LIVDPKSG---------ESIYDPTCGSGGMLLNAALLAKEKGQEYRNIK 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
           +   +GQE+   T A+    M +   E     D    + +G TLS   F      K+F  
Sbjct: 226 L---YGQEINIITSAIARMNMFLHGFE-----DFY--VIRGDTLSNPAFVEDDRVKKFDI 275

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPP+  KKW +D    +  ++N        G P        F  H+   ++      
Sbjct: 276 VIANPPYSIKKWNRDGWIHDSWNRNTY------GTPPQGCADYAFFQHIIASMK---EDT 326

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR AI+     L      + E ++R+ ++ENDLIE ++ L  +LF+ +++ + + I +  
Sbjct: 327 GRCAILYPHGVL----ERNNEKKMRKEIIENDLIECVIGLGKNLFYNSSMKSCIVICNKN 382

Query: 414 KTEERRGKVQLINATD 429
           K E R+ K+  I+A D
Sbjct: 383 KPENRKNKILFIDAKD 398


>gi|304437971|ref|ZP_07397916.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304369055|gb|EFM22735.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 538

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 190/466 (40%), Gaps = 51/466 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +    E      R   L   G   + +    
Sbjct: 52  IWDAAVKLWGHISAAEYRKVIVGLIFLRYISSVFEK-----RYAELVAEGDGFEDDPDAY 106

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG--- 131
            A   F+         + S      + + I    +  +AI  D      +     A    
Sbjct: 107 EAENIFFVPENARWKLIASKAHTPEIGTVI---DEAMRAIEADNKTLKNVLPKNYASPDL 163

Query: 132 ---LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              +L ++   F+ +++        ++   YE+ I +F +   +   +F TP  +V    
Sbjct: 164 DKRVLGEVVDLFTNMDMESAENTKDLLGRTYEYCIAQFAAYEGKKGGEFYTPASIVKTIV 223

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           A+L           P     +YDP CG+GG    +   +   G       +    GQE  
Sbjct: 224 AVL----------RPFSNCRVYDPCCGSGGMFVQSAKFIEVHGGRRGAVTVF---GQESN 270

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P+T  +    + IR +      D +    Q  T   DL+   +  + ++NPPF K     
Sbjct: 271 PDTWKMAKMNLAIRGI------DANLGEYQADTFFNDLYANLKADFIMANPPFNKD---- 320

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            D  + + K  E  R+  G+P   + +  ++ H+ + L+  PNG  +  +VL++  L   
Sbjct: 321 -DWGQPQLK--EDARWKYGVPPAGNANYAWIQHMISHLK--PNG--KIGLVLANGALSTQ 373

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
             G GE  IRR ++E DL+E I+ALP  LF+   I   LW ++  K  +++GK   I+A 
Sbjct: 374 TGGEGE--IRRKIIEADLVEGIIALPDKLFYSVTIPVTLWFITRNK--QQKGKTLFIDAR 429

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            +   +    +K R  +D+   +I D +V+ +NG+   +  +  F 
Sbjct: 430 KMGAMV---DRKHRDFSDEDIDKIADTFVAFQNGRLDDVKGFCAFA 472


>gi|315585917|gb|ADU40298.1| type I restriction-modification system protein [Helicobacter pylori
           35A]
          Length = 820

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 203/473 (42%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +           +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAKN----------N 52

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+     
Sbjct: 53  TYSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNGLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCRMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|198242593|ref|YP_002218397.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205355247|ref|YP_002229048.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207859652|ref|YP_002246303.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|1679866|emb|CAA68057.1| Sty SBLI [Salmonella enterica]
 gi|197937109|gb|ACH74442.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205275028|emb|CAR40114.1| Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206711455|emb|CAR35839.1| Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626205|gb|EGE32550.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326630410|gb|EGE36753.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 539

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 193/463 (41%), Gaps = 63/463 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + ++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQMEDEG---QGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   + + K    D  FS      
Sbjct: 76  QDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYFSRQNLET 134

Query: 128 EKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ VV
Sbjct: 135 KKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVV 194

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +L +P              +YDP CG+ G    ++  V    SH      +  +G
Sbjct: 195 TLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG 302
           QEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF 
Sbjct: 241 QELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPFN 292

Query: 303 -KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            K W  D +  +         RF G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 293 LKDWRNDAELTKDP-------RFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  + +    SGE+EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSMSSNT--SGEAEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
               R+G+   I+A +L T I    K+   +  D    I D Y
Sbjct: 400 GYRNRQGETLFIDARNLGTMINRTTKE---LTADDIATIADTY 439


>gi|161507538|ref|YP_001577492.1| Type I restriction-modification system modification subunit
           [Lactobacillus helveticus DPC 4571]
 gi|160348527|gb|ABX27201.1| Type I restriction-modification system modification subunit
           [Lactobacillus helveticus DPC 4571]
          Length = 551

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 163/339 (48%), Gaps = 41/339 (12%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++A  +  + K    +EL         + + YE+LI++F SE  + A +F TP++V  L 
Sbjct: 160 KQADTIANVIKAIGDLELVNQVDNKDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELL 219

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQE 246
           T L L     + K  P  + T+YDP  G+G  L     ++    G   KI      +GQE
Sbjct: 220 TKLTL-----VDKNYPEEM-TVYDPAMGSGSLLLKFKKYIKLANGQADKI----FYYGQE 269

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKK 304
           +   T+ +    M++  ++S      ++ +++G TL +D    +   F   + NPP+  K
Sbjct: 270 INMSTYNLARMNMILHGVDSS-----NQELRRGDTLDEDWPPVSKTMFDAVVMNPPYSLK 324

Query: 305 WEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           W  +K  ++         RF P   LP  S     FL+H    L+      G  AIVL  
Sbjct: 325 WSANKGFLQDP-------RFSPYGVLPPKSKADYAFLLHGFYHLK----NTGTMAIVLPH 373

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E +IR+ LLEN  I+A++ LP++LF+ T+I T + +L   KT+     V
Sbjct: 374 GVLFRGAA---EGKIRKKLLENGSIDAVIGLPSNLFYSTSIPTVIVVLKKDKTDR---SV 427

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             I+A+  +   +N+ + R    ++  ++ILD Y  RE+
Sbjct: 428 MFIDASKGFEKKKNQNELR----EEDIQKILDTYEKRED 462


>gi|135199|sp|P10484|T1M1_ECOLX RecName: Full=Type I restriction enzyme EcoR124II M protein;
           Short=M.EcoR124II
 gi|4467402|emb|CAA31541.1| unnamed protein product [Escherichia coli]
          Length = 520

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 205/485 (42%), Gaps = 78/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 10  AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 69

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 70  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 129

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 130 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 187

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM- 224
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 188 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 239

Query: 225 ---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              NH+ + G            GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 240 QFDNHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L++  F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S    
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+     VQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDTN---VQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSREN 461
            S+E+
Sbjct: 444 ASKED 448


>gi|315038269|ref|YP_004031837.1| type I restriction-modification system, M subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|312276402|gb|ADQ59042.1| type I restriction-modification system, M subunit [Lactobacillus
           amylovorus GRL 1112]
          Length = 557

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 155/311 (49%), Gaps = 36/311 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDP 212
            + + YE+LIR F SE  + A +F TP+ V  L T L L     + K+ P GM  T+YDP
Sbjct: 191 TLGDAYEYLIREFASESGKKAGEFYTPQKVSELLTKLTL-----VGKKYPEGM--TVYDP 243

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  L +   ++ D       P  ++ +GQE+   T  +    M++  ++S      
Sbjct: 244 AMGSGSLLLNFKKYIKDFAGGD--PNKVIYYGQEINISTFNLARMNMILHGVDSG----- 296

Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +++++QG TL  D    +   F   + NPP+  KW  +K  ++    +     +G   PK
Sbjct: 297 NQHLRQGDTLDADWPPISQTMFDAVVMNPPYSLKWSANKGFLQ----DPRFSPYGVLAPK 352

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+A+
Sbjct: 353 -SKADYAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRKKLLENGSIDAV 404

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+I T + +L  +K +E R  V  I+A+  +   +N+ + R    ++  +
Sbjct: 405 IGLPANLFYNTSIPTVILVL--KKNKENR-DVIFIDASKGFEKKKNQNELR----EEDIQ 457

Query: 451 QILDIYVSREN 461
           +ILD Y   E+
Sbjct: 458 KILDTYEKHED 468


>gi|291529890|emb|CBK95475.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum 70/3]
          Length = 511

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 208/463 (44%), Gaps = 66/463 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      +  R  + ++Y   G   +D  +F  
Sbjct: 5   LWKSADKLRGSVEPAEYKHVVLSLFFLKFAGDKFDAQREMIAKQY---GEKFVDTVAFY- 60

Query: 75  VAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDNAKAI---FEDFDFSSTIARL 127
                FY   E    Y +      +    +++ + +   N  A+     D  +S      
Sbjct: 61  TKDNVFYLPPESRWSYIMENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSRLQLDT 120

Query: 128 EK-AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            K A LL +I +      ++ D   + ++  IYE+ + +F     +G  +F TP+ +V+L
Sbjct: 121 AKLASLLDEINR------INTDDKENDIIGRIYEYFLSKFALAEGKGKGEFYTPKCIVNL 174

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             A +L+P D +          LYDP CG+GG    +M  V    +HH     +  +GQE
Sbjct: 175 -IAEMLEPYDGI----------LYDPCCGSGGMFVQSMKFVE---AHHGNKKQVSIYGQE 220

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFGKK 304
               T+ +C   + IR         +S N+ +   +T + D     +  Y ++NPPF +K
Sbjct: 221 YTNTTYKLCKMNLAIR--------GISANLGETAANTFTNDQHKDLKADYIMANPPFNQK 272

Query: 305 -WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W  + + ++    +G        +P  S+ +  +++++ +KL    +  G A  +L++ 
Sbjct: 273 AWRAENELIDDPRWDGY------EVPPTSNANYGWILNIVSKL----SQNGVAGFLLANG 322

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-NRKTEERRGKV 422
            L +      E +IR+ L+EN+L+EAI+ LP +LF+ T+I+  LWIL+ N+K        
Sbjct: 323 ALSDD---GTELKIRKQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEQNG 379

Query: 423 QLINATD-----LWTSIRNEG----KKRRIINDDQRRQILDIY 456
           QL    D     L+  +R  G    KK   + D  R ++  +Y
Sbjct: 380 QLKRYRDREREILFMDLRQMGGPYEKKYIELTDKDRAKVTSVY 422


>gi|325924159|ref|ZP_08185721.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
 gi|325545355|gb|EGD16647.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
          Length = 519

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 208/496 (41%), Gaps = 99/496 (19%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---GGS 65
           A+L N IWK A D+ G     DF + +L  TL  R           + E ++A+   G +
Sbjct: 8   AALQNQIWKIANDVRGAVDGWDFKQYVLG-TLFYRF----------ISENFIAYITGGDA 56

Query: 66  NIDLESF--------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN---------LE 101
           ++D  +               +K  GY  Y +  + +++   +TN R N         +E
Sbjct: 57  SVDYAAMADDDESIEAAKDDAIKTKGYFIYPSQLFVNVAAKANTNERLNTDLANIFKAIE 116

Query: 102 SYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPD 148
           +  + +S   + K +F DFD +S   RL     +K   L  + K  + ++       H D
Sbjct: 117 ASASGYSSEQDIKGLFADFDTTSN--RLGNTVKDKNTRLAAVLKGVAALDFGGFYASHID 174

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              D      YE LI  + +   +   +F TP+ V  L   L +             I  
Sbjct: 175 LFGDA-----YEFLISNYAANAGKSGGEFFTPQQVSKLIAQLAM--------HGQTSINK 221

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L  A     D    H I       GQE+   T+ +    M +  +  D 
Sbjct: 222 IYDPACGSGSLLLQAKKQFED----HVIEDGFF--GQEINHTTYNLARMNMFLHNINYDK 275

Query: 269 RRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                  I  G+TL +  F   K F   +SNPP+  KW   +D            RF P 
Sbjct: 276 FH-----IHLGNTLIEPHFGDDKPFDAIVSNPPYSVKWIGSEDPTLINDD-----RFAPA 325

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+
Sbjct: 326 GVLAPKSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNN 378

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            +E++++L  +LF+ T IA  + +LS  KT+      Q I+A+ L      +G    ++ 
Sbjct: 379 YVESVISLAPNLFYGTTIAVNILVLSKHKTDT---ATQFIDASGLL----KKGTNNNLLL 431

Query: 446 DDQRRQILDIYVSREN 461
           D+  ++I+ ++ S+ N
Sbjct: 432 DEHIKEIMAVFGSKAN 447


>gi|254780040|ref|YP_003058147.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori B38]
 gi|254001953|emb|CAX30210.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori B38]
          Length = 816

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 202/473 (42%), Gaps = 63/473 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKARNNN 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+     
Sbjct: 50  F-SEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+  F SE  +    F TP +
Sbjct: 106 GEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMCHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      K F Y ++N
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSATADIAKG--GSSTLSNPFFIKNGMLKTFDYVVAN 266

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 267 PPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGK 322

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + IL     
Sbjct: 323 GAVILPHGVLFRGNA---EGAIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIILDKENA 379

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 380 HARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 428


>gi|284023442|ref|ZP_06377840.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 132]
          Length = 424

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 162/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D  ST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF
Sbjct: 42  GLFSDMDLIST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRF 98

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L      
Sbjct: 99  AATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV--- 147

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K   +    GQE    T+ +    ML+  +     R  + +I+   TL    
Sbjct: 148 -------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPA 195

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F G  F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L
Sbjct: 196 FLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYL 250

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T
Sbjct: 251 D----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT 303

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 304 --CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 352


>gi|194426653|ref|ZP_03059207.1| type I restriction-modification system, M subunit [Escherichia coli
           B171]
 gi|194415392|gb|EDX31660.1| type I restriction-modification system, M subunit [Escherichia coli
           B171]
 gi|195183370|dbj|BAG66907.1| predicted type I restriction-modification system methyltransferase
           subunit [Escherichia coli O111:H-]
 gi|323158215|gb|EFZ44307.1| type I restriction-modification system, M subunit [Escherichia coli
           E128010]
 gi|323939693|gb|EGB35897.1| type I restriction-modification system [Escherichia coli E482]
          Length = 518

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 203/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+     VQ I+A++L+    N      I+ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLSKHKTDTN---VQFIDASELFKKETN----NNILTDAHIEQIMQVFASKE 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|325696152|gb|EGD38043.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK160]
 gi|328946725|gb|EGG40863.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1087]
          Length = 513

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 207/463 (44%), Gaps = 65/463 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYL------AFGGSNI 67
           +W  A+ L G    +++ KVI+    L+ +  A E   +  + E Y       A+   NI
Sbjct: 26  LWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAEGYGFENDPDAYSEENI 85

Query: 68  DLESFV-KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
               FV ++A + F  +  +S S +G+        +E    S  +    I+   D    +
Sbjct: 86  ---FFVPEIARWQFIASHAHS-SEIGTVLDEAMREIEEDNPSLENVLPQIYASPDLDKRV 141

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                   L ++   F+ I+++       ++   YE+ I +F +   +   +F TP  +V
Sbjct: 142 --------LGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGGEFYTPTSIV 193

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                +L           P   R +YDP CG+GG    +   + +   H      L   G
Sbjct: 194 KTIVEIL----------KPYRGR-VYDPACGSGGMFVQSAKFIEN---HSGNINNLSVFG 239

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE   +T  +    M+IR +++D          Q ++   DL    + +Y ++NPPF   
Sbjct: 240 QESNADTWKMAKMNMVIRGIDADFGE------HQANSFFNDLHPTLKANYIMANPPFNIS 293

Query: 304 KWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            W  DK  D +          R+  G P  S+ +  ++ H+ + ++ P NG  +  +VL+
Sbjct: 294 NWGADKLQDDI----------RWKYGTPPNSNANYAWIQHMIHHMD-PSNG--KVGLVLA 340

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K ++++GK
Sbjct: 341 NGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFIS--KNKKQKGK 396

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
              I+A ++   I    +K R  +D+  +++ D + + +NG  
Sbjct: 397 TLFIDARNMGEMID---RKHRDFSDEDIKKLADTFEAFQNGNL 436


>gi|319778988|ref|YP_004129901.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Taylorella equigenitalis MCE9]
 gi|317109012|gb|ADU91758.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Taylorella equigenitalis MCE9]
          Length = 497

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 179/428 (41%), Gaps = 59/428 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W+ A  LWG     D+ KVI+    L+ +    +     + ++   F     D++++  
Sbjct: 10  LWEAACKLWGSIPAADYRKVIIGLIFLKYVSTTFDKRFQQLLDEGEGFEN---DIDAYT- 65

Query: 75  VAGYSFYNTSEYSLSTLGST-----------NTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +   FY   E   + +              N    +E+   S +     I+   D    
Sbjct: 66  -SKNLFYIPEEARWNHISKASHTEKIGVVIDNAMRQIETQNKSLNGVLPKIYASPDIDKH 124

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +  L     L+    NF  IE + D     ++   YE+ I  F S       +F TP  +
Sbjct: 125 V--LSDVVDLFTNSINFESIEQNKD-----ILGRTYEYCIANFASYEGRRGGEFYTPASI 177

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVP 242
           V     +L        K   GM   +YDP  G+GG +  +  ++    G    I      
Sbjct: 178 VKTMVEIL--------KPQSGM--RIYDPCMGSGGMIVQSAKYIEQHAGKRFSISV---- 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P+T  +    M IR ++++  +          T   DL   K+F   ++NPPF 
Sbjct: 224 YGQESNPDTWKMAKMNMAIRGIDANLGQ------HHADTFKNDLHPQKKFDIIMANPPFN 277

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 ++ VE         R+  G+P  S+ +  ++ H+ + L       G+  +VL++
Sbjct: 278 LSEWGQENLVEDI-------RWKYGVPPKSNANYAWIQHMIHHLAT----NGKIGLVLAN 326

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L      SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++  K ++++GK 
Sbjct: 327 GAL--SSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFIT--KNKKQKGKT 382

Query: 423 QLINATDL 430
             I+A ++
Sbjct: 383 LFIDARNI 390


>gi|87310398|ref|ZP_01092528.1| type I restriction system adenine methylase [Blastopirellula marina
           DSM 3645]
 gi|87286897|gb|EAQ78801.1| type I restriction system adenine methylase [Blastopirellula marina
           DSM 3645]
          Length = 526

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 44/308 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +  F S   +    F TPR VV +   +L          +PG  R +YDP 
Sbjct: 165 ILGRVYEYFLSEFASAEGKKGGQFYTPRCVVRVLVEML----------APGKGR-IYDPC 213

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+ G    +   V + G   +I  I V +GQE  P T  + +  + IR +E D      
Sbjct: 214 CGSAGMFVQSEKFVEEHGG--RIGDIAV-YGQESNPTTRRLALMNLAIRGIEGDI----- 265

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T  +DL    +  + L+NPPF    W ++ D V          R+  G+P   
Sbjct: 266 -GPENADTFRRDLHKDLKADFVLANPPFNDSDWHRNDDDV----------RWAYGVPPKG 314

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H  +   L P  GG A  VL++  + + +  SGE EIR+ ++E DL++ +VA
Sbjct: 315 NANYAWVQHFIH--HLAP--GGFAGFVLANGSMSSNQ--SGEGEIRKAIVEADLVDCMVA 368

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERR----GKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF+ T I   LW L+  K ++ R    G+   I+A  L   I    +  R + D++
Sbjct: 369 LPGQLFYSTQIPVCLWFLTRGKKDKSRRNRVGETLFIDARKLGVLI---DRVHRELTDEE 425

Query: 449 RRQILDIY 456
            ++I D Y
Sbjct: 426 LQRIADTY 433


>gi|330957222|gb|EGH57482.1| type i restriction enzyme EcoR124II M protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 519

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 206/492 (41%), Gaps = 83/492 (16%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T   A+L   IW  A D+ G     DF + +L  TL  R         S     Y+  G 
Sbjct: 4   TQQRAALQRQIWAIANDVRGAVDGWDFKQYVLG-TLFYRF-------ISENFVDYITGGD 55

Query: 65  SNIDLESF--------------VKVAGYSFYNTSEYS-LSTLGSTNTRNN---------L 100
           S+++  S               +K  GY    +  +S ++   STN   N         +
Sbjct: 56  SSVNYPSMEDDDPLISAAKDDAIKTKGYFIAPSQLFSNVAAKASTNDSLNTDLKRIFDAI 115

Query: 101 ESYIASFS--DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHP-DTVPD 152
           ES    ++   + K +F DFD +S     T+A  +K   L  + K  S +E    D    
Sbjct: 116 ESSANGYASEQDIKGLFADFDTTSNRLGNTVA--DKNKRLADVLKGVSKLEFGSFDASHI 173

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  + YE LI  + +   +   +F TP+ V  L   L      A+ K++   +  +YDP
Sbjct: 174 DLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQL------AMHKQTS--VNKIYDP 225

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  A  H       H I       GQE+   T+ +    M +  +  D     
Sbjct: 226 ACGSGSLLLQAKKHF----DAHVIQDGFF--GQEVNHTTYNLARMNMFLHNINYDKF--- 276

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +IQ G TL    F   K F   +SNPP+  KW   +D            RF P   L 
Sbjct: 277 --DIQLGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSEDPTLINDD-----RFAPAGVLA 329

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E 
Sbjct: 330 PKSKADFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVET 382

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++L  +LFF T IA  + +L+  KT+      Q I+A+ L+     +G    ++ D   
Sbjct: 383 VISLAPNLFFGTTIAVNILVLAKNKTDT---TTQFIDASALF----KKGTNNNLLEDAHV 435

Query: 450 RQILDIYVSREN 461
            +I+ ++ S+EN
Sbjct: 436 ERIMQVFDSKEN 447


>gi|327460986|gb|EGF07319.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1057]
          Length = 512

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 209/467 (44%), Gaps = 73/467 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG-GSNIDLE 70
           +W  A+ L G    +++ KVI+    L+ +  A E       EKY   LA G G   D +
Sbjct: 26  LWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFE-------EKYQQLLAEGDGFENDPD 78

Query: 71  SFVK--------VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
           ++ +        +A + F  +  +S S +G+        +E    S  +    I+   D 
Sbjct: 79  AYSEENIFFVPEIARWQFIASHAHS-SKIGTVLDKAMREIEEDNPSLENVLPQIYASPDL 137

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +        L ++   F+ I+++       ++   YE+ I +F +   +   +F TP
Sbjct: 138 DKRV--------LGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGGEFYTP 189

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V     +L           P   R +YDP CG+GG    +   + +   H      L
Sbjct: 190 TSIVKTIVEIL----------KPYRGR-VYDPACGSGGMFVQSAKFIKN---HSGNINNL 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE   +T  +    M+IR +++D          Q ++   DL    + +Y ++NPP
Sbjct: 236 SVFGQESNADTWKMAKMNMVIRGIDADFGE------HQANSFFNDLHPTLKANYIMANPP 289

Query: 301 FG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F    W  DK  D +          R+  G P  S+ +  ++ H+ + ++ P NG  +  
Sbjct: 290 FNISNWGADKLQDDI----------RWKYGTPPNSNANYAWIQHMIHHMD-PSNG--KVG 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K ++
Sbjct: 337 LVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFIS--KNKK 392

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           ++GK   I+A ++   I    +K R  +++  +++ D + + +NG F
Sbjct: 393 QKGKTLFIDARNMGEMID---RKHRDFSNEDIKKLADTFEAFQNGNF 436


>gi|308190009|ref|YP_003922940.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|307624751|gb|ADN69056.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
          Length = 540

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 217/498 (43%), Gaps = 72/498 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IWK A DL G     DF + +L F   R +    E   + V  K    G  + D
Sbjct: 22  AELHKTIWKIANDLRGSVDGWDFKQYVLGFLFYRYIS---ENLTNFVNTKQEEAGVKDFD 78

Query: 69  L------------ESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIA 105
                         + ++  G+       F N ++   + L    T +N+      S I 
Sbjct: 79  YAEISDKQANEIRNTLIQEKGFFILPSKLFKNVAKNCRNDLNLNETLDNIFKGIEASAIG 138

Query: 106 SFSDN-AKAIFEDFDFSS------TIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSN 157
           + S+N  K +F D + ++       I R +K +G+L  I +   G + H   +      +
Sbjct: 139 TPSENDIKGLFNDVNVNNDKLGNNVIERNKKLSGILEAINEMQLG-DFHGHNID--AFGD 195

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + +   +   +F TP++V  L  +L L    +  +E    + ++YDP CG+G
Sbjct: 196 AYEYLMTMYAANAGKSGGEFFTPQEVSELLASLTLVDFSSDKREMKKEVDSVYDPACGSG 255

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L       A      K+       GQE+   T+ +    M +  +      D S  I+
Sbjct: 256 SLLL----KFAKILGKDKVTKGFF--GQEINLTTYNLARINMFLHGINF---ADFS--IK 304

Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
            G TL+   +    K F   +SNPP+  KW+ D +      +     RF P   L   S 
Sbjct: 305 HGDTLNHPQYFENVKNFEAIVSNPPYSIKWDGDTNTTLINDR-----RFAPAGVLAPKSK 359

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F+MH+ + L    +  G AAIV     L+ G A   E +IR++L++N+ ++AI+ L
Sbjct: 360 ADLAFVMHILHLL----SAKGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAIIQL 412

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+IAT + +L   K   +   +  INA++ +   +N  K    + D+    IL
Sbjct: 413 PSNLFFGTSIATCIIVLRKNK---KDSDILFINASNEFIKEKNNNK----LTDENINNIL 465

Query: 454 DIY-VSRENGKFSRMLDY 470
           DIY  ++E    SR + Y
Sbjct: 466 DIYRYTKEKEYVSRNVPY 483


>gi|253991441|ref|YP_003042797.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782891|emb|CAQ86056.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica]
          Length = 721

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 207/492 (42%), Gaps = 77/492 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVR 56
           MT F    A L   IW  A D+ G     DF + +L     R         +E    ++ 
Sbjct: 1   MTSFQ-QRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIH 59

Query: 57  EKYLAFGGSNI--DL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDN 110
             Y A   S I  D+ +  +K  GY  Y +  + +++   STN R N  L S   +   +
Sbjct: 60  --YAALDDSIITDDIKDDAIKTKGYFIYPSQLFCNVAAKASTNDRLNADLNSIFVAIESS 117

Query: 111 A---------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRV 154
           A         K +F DFD +S   RL     +K   L  + K   G++L    D   D +
Sbjct: 118 AYGYPSEADIKGLFADFDTTSN--RLGNTVKDKNSRLAAVLKGVEGLKLGNFNDHQID-L 174

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE LI  + +   +   +F TP+ V  L   L +             +  +YDP  
Sbjct: 175 FGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAA 226

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A  H      +H I       GQE+   T  +    M +  +  D       
Sbjct: 227 GSGSLLLQAKKHF----DNHIIEEGFF--GQEINHTTFNLARMNMFLHNINYDKF----- 275

Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LP 329
           +I+ G+TL++  F  ++ F   +SNPP+  KW    D   +  E       RF P   L 
Sbjct: 276 DIRLGNTLTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLA 328

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E 
Sbjct: 329 PKSKADFAFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVET 381

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++L  +LFF T IA  + +LS  KT+     VQ I+A+ L+    N      I+ D   
Sbjct: 382 VISLAPNLFFGTTIAVNILVLSKHKTDT---SVQFIDASGLFKKETN----NNILTDAHI 434

Query: 450 RQILDIYVSREN 461
            QI+ ++ S+ +
Sbjct: 435 AQIMQVFSSKSD 446


>gi|119632845|gb|ABL84420.1| type I DNA methylase [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 539

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 192/463 (41%), Gaps = 63/463 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 76  QDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLET 134

Query: 128 EKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ VV
Sbjct: 135 KKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVV 194

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +L +P              +YDP CG+ G    ++  V    SH      +  +G
Sbjct: 195 TLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG 302
           QEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF 
Sbjct: 241 QELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPFN 292

Query: 303 -KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            K W  D +  +         RF G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 293 LKDWRNDAELTKDP-------RFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  + +    SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
               R+G+   I+A +L T I    K+   +  D    I D Y
Sbjct: 400 GYRNRQGETLFIDARNLGTMINRTTKE---LTADDIVTIADTY 439


>gi|331006357|ref|ZP_08329668.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
 gi|330419839|gb|EGG94194.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
          Length = 517

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 207/499 (41%), Gaps = 72/499 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYL 60
           T   A+L   IW  A D+ G     DF + +L     R         +E    ++    L
Sbjct: 4   TQQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSIHYAAL 63

Query: 61  AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA----- 111
           +      D+ +  +K  GY  Y +  ++     + N  +   +L +  A+   +A     
Sbjct: 64  SDEVITPDIKDDAIKTKGYFIYPSQLFATVAKNANNNESLNTDLAAIFAAIEASASGYPS 123

Query: 112 ----KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMS 156
               K +F DFD +S   RL     +K   L  + K  +G++        PD     +  
Sbjct: 124 EPDIKGLFADFDTTSN--RLGNTVKDKNLRLAAVLKGVAGLDFGHDFYEKPDAAQIDLFG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L      A+ K++   +  +YDP  G+
Sbjct: 182 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQL------AMHKQTS--VNKIYDPAAGS 233

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A  H      +H I       GQE+   T+ +    M +  +  D       N+
Sbjct: 234 GSLLLQAKKHF----DNHIIEDGF--WGQEINHTTYNLARMNMFLHNINYDKF-----NM 282

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           Q G+TL+   F   K F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 283 QLGNTLTDPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSK 337

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L
Sbjct: 338 ADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISL 390

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LFF T IA  + +LS  KT+      Q I+A+ L+    N       +  D   QI+
Sbjct: 391 APNLFFGTTIAVTILVLSKHKTDT---TTQFIDASGLFKKDTN----TNTMTGDHIEQIM 443

Query: 454 DIYVSRENGK-FSRMLDYR 471
            ++ S+ N + F+R + Y 
Sbjct: 444 QVFDSKANVEHFARSVPYE 462


>gi|288937351|ref|YP_003441410.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella
           variicola At-22]
 gi|288892060|gb|ADC60378.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella
           variicola At-22]
          Length = 539

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 192/463 (41%), Gaps = 63/463 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 76  QDNI-FYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLET 134

Query: 128 EKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ VV
Sbjct: 135 KKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVV 194

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +L +P              +YDP CG+ G    ++  V    SH      +  +G
Sbjct: 195 TLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG 302
           QEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF 
Sbjct: 241 QELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPFN 292

Query: 303 -KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            K W  D +  +         RF G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 293 LKDWRNDAELTKDP-------RFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  + +    SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K      
Sbjct: 342 ANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              +R+G+   I+A +L T I    K+   +  D    I D Y
Sbjct: 400 GYRDRQGETLFIDARNLGTMINRTTKE---LTADDIATIADTY 439


>gi|168464569|ref|ZP_02698472.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632696|gb|EDX51150.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 539

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 192/462 (41%), Gaps = 61/462 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 76  QDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLET 134

Query: 128 EKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ VV
Sbjct: 135 KKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVV 194

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +L +P              +YDP CG+ G    ++  V    SH      +  +G
Sbjct: 195 TLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG 302
           QEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF 
Sbjct: 241 QELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPFN 292

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            K W  D +  +      +L   G   P   + +  +++H+ +KL    +  G A  VL+
Sbjct: 293 LKDWRNDAELTK------DLRFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVLA 342

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE---- 417
           +  + +    SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +    
Sbjct: 343 NGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAKG 400

Query: 418 ---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              R+G+   I+A +L T +    K+   +  D    I D Y
Sbjct: 401 YRNRQGETLFIDARNLGTMMNRTTKE---LTADDIATIADTY 439


>gi|308178071|ref|YP_003917477.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307745534|emb|CBT76506.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 816

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 151/323 (46%), Gaps = 47/323 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F ++  +    F TP +V  +   LL  P       S     T+YD
Sbjct: 135 DDLLGDAYEYLMRHFATQSGKSKGQFYTPAEVSRVMAQLLQIP------ASTPKSTTVYD 188

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      VAD       P  L  +GQE +  T A+    M++   E+     
Sbjct: 189 PTCGSGSLLI----KVADAA-----PNGLSIYGQENDNATWALARMNMILHGNET----- 234

Query: 272 LSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-G 325
              +++QG+TL+   F      + F Y ++NPPF  K W    D+          GRF G
Sbjct: 235 --HDLRQGNTLADPKFINSGSLQTFDYLVANPPFSVKTWTNGFDS--------SYGRFDG 284

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   +G   FL+H+   L   P G G   +VL    LF G +   E+ IR  L++  
Sbjct: 285 FGTPPDKNGDYAFLLHMIKSLR--PRGKG--VVVLPHGVLFRGNS---EARIRTELIKRG 337

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+AI+ LPT+LF+ T I   L ++  +  + R G + +I+A+        +G K R+  
Sbjct: 338 YIKAIIGLPTNLFYGTGIPACLIVIDKQDAQARTG-IFMIDAS---KGFAKDGPKNRLRP 393

Query: 446 DDQRRQILDIYVSRENGKFSRML 468
            D  + +     S+E  ++SRM+
Sbjct: 394 RDMHKIVDAFTGSKEIARYSRMV 416


>gi|323965459|gb|EGB60914.1| N-6 DNA methylase [Escherichia coli M863]
 gi|327250266|gb|EGE61985.1| N-6 DNA Methylase family protein [Escherichia coli STEC_7v]
          Length = 539

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 192/448 (42%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F 
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +   +T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPANTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+G+   I+A +L T I    K+
Sbjct: 399 KGYRDRQGETLFIDARNLGTMISRTTKE 426


>gi|17227995|ref|NP_484543.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120]
 gi|17129844|dbj|BAB72457.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120]
          Length = 537

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 44/350 (12%)

Query: 114 IFEDFDFSST-IARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +FED D +ST + R  KA   L+ KI  + + I+   +     V+ + YE+LI +F S  
Sbjct: 155 LFEDLDLTSTKLGRTPKAKNALIAKILVHLNKIDFRLEDTESDVLGDAYEYLIGQFASGA 214

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  +   ++              ++++YDPTCG+G  L      V   
Sbjct: 215 GKKAGEFYTPQQVSKVLAKIV--------TTGKSRLKSVYDPTCGSGSLLLRVAREVESV 266

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G           +GQE+   T+ +    M++  +     R+   +++Q  TL      G 
Sbjct: 267 GDF---------YGQEMNRTTYNLARMNMILHGVH---YRNF--DLRQEDTLENPQHEGM 312

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPPF  +W  +K   E + +  + G+  P     S     F+ H+ + L    
Sbjct: 313 RFEAVVANPPFSAQWSANK-LFESDDRFSQYGKLAPA----SKADFAFVQHMIHHL---- 363

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWI 409
           +  G  A+VL    LF G A   E  IR++++ E + ++A++ LP ++F+ T+I T   I
Sbjct: 364 DDNGIMAVVLPHGVLFRGAA---EGHIRKYVIKERNWLDAVIGLPANIFYGTSIPT--CI 418

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           L  +K  E    +  I+A+  +   +N+   R    D+   +I+  Y  R
Sbjct: 419 LVFKKCRENPDDILFIDASAYFEKAKNQNYLR----DEDVEKIVSTYRQR 464


>gi|85716964|ref|ZP_01047928.1| possible type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
 gi|85696243|gb|EAQ34137.1| possible type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
          Length = 499

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 195/427 (45%), Gaps = 49/427 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGSNIDL 69
           L +++W  A  L G    +D+ + I P    +RL     E  + A+ E        N   
Sbjct: 9   LESYLWGAATLLRGLIDASDYKQYIFPLMFFKRLSDVWDEDYQQALDETGDEGYAINTAN 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDFSSTIAR 126
           + FV   G + +N    +   +G    R  L +++A  + N    + +F + +++     
Sbjct: 69  DRFVIPEGAN-WNDVRAAPRDVG----RALLSAFLAIEAANPERLQGVFGNANWTDKAQM 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            +    L  + ++FS  +L    VP+  + N YE+LI++F  +    A++F T R +VHL
Sbjct: 124 PDST--LKNLIEHFSKHDLTLAAVPEDELGNGYEYLIKKFADDSGHTAQEFYTNRTLVHL 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             A +L+P        PG   ++YDPTCGTGG L   +  V   G   +   +   +GQE
Sbjct: 182 -MAQMLEP-------QPG--ESIYDPTCGTGGMLISCLAEVKRRGGDIRTTGL---YGQE 228

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKR---FHYCLSNPPFG 302
           L   T A+    ++I  ++         +I  G+TL+   F  G R   F   L+NPP+ 
Sbjct: 229 LITITAAIARMNLVIHGVD-------DFHIASGNTLATPAFVQGDRLRTFDVVLANPPYS 281

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            KKW  ++ A E++      GR   G P        F  H+ + +       GR AI+  
Sbjct: 282 IKKW--NRGAWEQD----AWGRNFLGSPPQGRADYAFFQHILSSMHAKT---GRCAILFP 332

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF       E+E+RR L+E+D +E ++ L   LF+ + +   + I  ++K E R+G+
Sbjct: 333 HGVLFRNE----EAEMRRRLVESDRVECVLGLGPGLFYNSPMEACVVICRSQKPEARKGR 388

Query: 422 VQLINAT 428
           +  I+A 
Sbjct: 389 ILFIDAV 395


>gi|317182738|dbj|BAJ60522.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 820

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 203/473 (42%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +           +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAKN----------N 52

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+     
Sbjct: 53  TYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|317011670|gb|ADU85417.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           SouthAfrica7]
          Length = 817

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 202/477 (42%), Gaps = 70/477 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N D
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKAKN-D 48

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS---DNAKAIFEDFDFSSTIA 125
            +S + V    FY   E  L+  G     + L   IA  +   D  K   +  DF+    
Sbjct: 49  PDSDIIVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAEQNDLLKGAIDSVDFNDNTK 105

Query: 126 RLEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP 
Sbjct: 106 LGEGKAMMDTLSNLIKIFANLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPS 165

Query: 182 DVVHLATALLLDPDDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           +V  L + L          E  G  R   T+YDPTCG+G  L  A +   + G       
Sbjct: 166 EVSLLLSLL---------LEIDGNTRQDKTIYDPTCGSGSLLLKASSLAGENG------- 209

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQE +  T A+C   M+   L +    D++K     STLS   F      K F Y
Sbjct: 210 -LTIYGQEKDNSTTALCKMNMV---LHNSATADIAKG--GSSTLSNPHFLENGMLKTFDY 263

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            ++NPPF  K   D  +++ + K   +    RF  G P   +G   FL+H+   L+    
Sbjct: 264 VVANPPFSLKNWTDGLSIDPKSKQVIDDNFNRFEDGTPPEKNGDFAFLLHIIKSLK---- 319

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+ A++L    LF G A   E  IR+ +L    I+ ++ L  +LF+ T+I   + +L 
Sbjct: 320 NTGKGAVILPHGVLFRGNA---EGVIRKNILTKGYIKGVIGLAPNLFYGTSIPACVIVLD 376

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                 R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 377 KENARARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFKAKKEIPYYSKMV 429


>gi|284051207|ref|ZP_06381417.1| type I restriction-modification system, M subunit [Arthrospira
           platensis str. Paraca]
          Length = 499

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 39/340 (11%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L ++   F GI L  +    D ++ + YE+L+R F +E  +    F TP +V  +   +L
Sbjct: 115 LSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKGQFYTPAEVSRVVAKVL 174

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
             P +           T+YDPTCG+G  L      VAD     + P  L  +GQE++  T
Sbjct: 175 AIPPETR------QDATVYDPTCGSGSLLL----KVAD-----EAPNGLSIYGQEMDNAT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFG-KKWEKDK 309
           +++    M    + + P  ++ K+    +   K+   + KRF + ++NPPF  K W    
Sbjct: 220 YSLARMNMF---MHNHPTAEIWKDNTLAAPYWKEKDGSLKRFDFAVANPPFSYKSWSNGV 276

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D    E       RFG G+P   +G   FL+H+   L+      G+AA++L    LF G 
Sbjct: 277 DTARDE-----FNRFGYGVPPAKNGDYAFLLHILKSLK----STGKAAVILPHGVLFRGN 327

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L   +   R G + +I+A+ 
Sbjct: 328 A---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVLDKAEAATRDG-LFMIDASK 383

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
            +     +G K R+ + D  + I+D++ ++ E  ++SR++
Sbjct: 384 GFIK---DGNKNRLRSQDIHK-IVDVFNNQLEIPRYSRLV 419


>gi|78044904|ref|YP_359683.1| type I restriction-modification system subunit M [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997019|gb|ABB15918.1| type I restriction-modification system, M subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 814

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 209/480 (43%), Gaps = 53/480 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L   ++K A+ L G    +++ + I     L+         +  +   Y   G S+
Sbjct: 9   TLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSD 68

Query: 67  IDLESFVK-VAGYSFYNTS-----EYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFD 119
             ++   +    Y  +        EY L+      N  N   S +   +     + +  D
Sbjct: 69  EQIKELTEDPNSYDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHID 128

Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAED 176
           F++T  +++ K   L  +  +F+   L P++   PD ++   YE+L++ F     +   +
Sbjct: 129 FNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPD-LLGAAYEYLLKEFADSAGKKGGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V  L   L+           PG   T+YDPT G+GGFL +A ++V + G     
Sbjct: 188 FYTPAGVKKLMVRLV----------KPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYN 237

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              L  +GQEL   T ++C   M++  + SD       +I+    L+  +F      KRF
Sbjct: 238 ---LGLYGQELNGLTWSICKMNMILHGI-SDA------HIENEDVLTTPMFLENGYIKRF 287

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF + + +      +  K G    F P   K +D  ++FL H+   L+     
Sbjct: 288 DRVLANPPFSENYTRANMQYPERFKYG----FTPETGKKAD--LMFLQHMIASLK----D 337

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G  A V+    LF G     E  IR  +++  +IEAI+ LP  LF+ T I   + +++ 
Sbjct: 338 DGIMATVMPHGVLFRG---GQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINK 394

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYR 471
            K E  + K+  INA   +     EG+ +  +  +   +I++++   +E   +SR++D +
Sbjct: 395 NKPEHLKNKILFINADREY----GEGRNQNFLRPEDIEKIVNVFDEKKEIPGYSRLVDIK 450


>gi|332535596|ref|ZP_08411364.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034980|gb|EGI71501.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
          Length = 506

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 191/459 (41%), Gaps = 50/459 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL----- 69
           +W   +   G    + +   IL    L+ +    +     + E+Y    G   DL     
Sbjct: 15  VWAACDTFRGTVDPSTYKDFILTMLFLKYISDVYQDEYDKLLEQY----GDQPDLIHAMM 70

Query: 70  --ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             + FV   G SF++  E              L +   +     K +F+D  F++     
Sbjct: 71  AKQRFVLPKGASFWDLYEERHKAGNGQRIDQALHAIEEANGGKLKNVFQDISFNTDKLGQ 130

Query: 128 EKA--GLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           EK    +L  I ++F    + L P  V    ++ N YE+LI+ F +   + A +F TP +
Sbjct: 131 EKQKNDILRHILEDFGKEVLNLRPSRVGSLDIIGNAYEYLIKHFAASSGKSAGEFYTPPE 190

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L  A+L DP +            + DP CG+G  L      + +  +  K   +   
Sbjct: 191 VSDLLAAIL-DPQEG---------DQICDPACGSGSLLMKCGRMIRNNFNGSKKYALF-- 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE    T A+    M +   E + R +    I+    L KD      F    +NPPF 
Sbjct: 239 -GQEAIGSTWALAKMNMFLHG-EDNHRIEWGDTIRHPMLLDKDGTGLLHFDIVTANPPFS 296

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             KW  +         N E GRF  G+P  + G   F+ H+   L+ P +G  R  +V+ 
Sbjct: 297 LDKWGFEG------ADNDEFGRFRRGVPPKTKGDYAFISHMVETLK-PESG--RMGVVVP 347

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G A   E +IR  L+E +L++A++ LP  LFF T I   + I   +KT+    K
Sbjct: 348 HGVLFRGAA---EGKIRAQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKKQKTDN---K 401

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +  I+ +  + S    GK +  +  +  ++I+D Y +RE
Sbjct: 402 ILFIDGSREFKS----GKNQNQLTANNIQKIIDTYKARE 436


>gi|331681327|ref|ZP_08381964.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
 gi|331081548|gb|EGI52709.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
          Length = 539

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 192/448 (42%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F 
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +   +T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPANTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+G+   I+A +L T I    K+
Sbjct: 399 KGYRDRQGETLFIDARNLGTMISRTTKE 426


>gi|242280199|ref|YP_002992328.1| site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio salexigens DSM 2638]
 gi|242123093|gb|ACS80789.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio salexigens DSM 2638]
          Length = 548

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 45/314 (14%)

Query: 125 ARLE-KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           ARLE   G L ++    + I    +++  + ++ ++YE+ +  F +   +    + TP+ 
Sbjct: 152 ARLEVPDGKLSEVMDLINSIPFEHESLKSKDILGHVYEYFLGEFAAAEGKKGGQYYTPKS 211

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L T +L        +   G I   YDP CG+GGF   +   V    +H   P  L  
Sbjct: 212 IVNLITEML--------RPYKGRI---YDPACGSGGFFVSSEEFVE---THTHRPADLAI 257

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    M IR +E D  +      +   T + D     RF Y ++NPPF 
Sbjct: 258 YGQESNPTTWRLAAMNMAIRGIEYDFGK------EPADTFTNDQHGTMRFDYIMANPPFN 311

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            K W  D  A +         R+  GLP  ++ +  ++ H+ + L    +  G+  ++L+
Sbjct: 312 LKGWGADSLANDV--------RWKYGLPPDNNANFAWMQHMIHHL----SPKGKMGLLLA 359

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----- 416
           +  +    A SGE +IRR ++E+DL+E IVALP  LF  T I   +W L+  K+      
Sbjct: 360 NGSM--SSATSGEGDIRRKIIEDDLVECIVALPGQLFTNTQIPACIWFLNKDKSNGQNIE 417

Query: 417 ---ERRGKVQLINA 427
               R G+V  I+A
Sbjct: 418 DLRNRTGEVLFIDA 431


>gi|193070116|ref|ZP_03051062.1| type I restriction-modification system, M subunit [Escherichia coli
           E110019]
 gi|218561525|ref|YP_002394438.1| type I restriction-modification system methyltransferase subunit;
           (hsdM-like) [Escherichia coli S88]
 gi|192956569|gb|EDV87026.1| type I restriction-modification system, M subunit [Escherichia coli
           E110019]
 gi|218368294|emb|CAR06112.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) [Escherichia coli S88]
          Length = 539

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 191/448 (42%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F 
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+G+   I+A +L T I    K+
Sbjct: 399 KGYRDRQGETLFIDARNLGTMISRTTKE 426


>gi|149920794|ref|ZP_01909257.1| possible type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
 gi|149818312|gb|EDM77764.1| possible type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
          Length = 511

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 189/429 (44%), Gaps = 50/429 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGS 65
           L +++W  A  L G     D+ + I P    +RL    +   +     Y     LA   +
Sbjct: 13  LESYLWGAATILRGLVDAGDYKQFIFPLVFYKRLSDVWDEDYAEALADYDDSEELALAQA 72

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           N   E FV   G + +N    +   +G    ++ + +  A+     + IF D  +++   
Sbjct: 73  N---ERFVIPEG-AHWNDLRKAAKNVGKA-IQDAMRAIEAANPGRLEGIFGDAPWTNK-N 126

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL     L  + ++FSG  L    VP+ ++ + YE+L+ +F  +    A++F T R +VH
Sbjct: 127 RLPDH-TLKSLLEHFSGQVLSIARVPEDMLGDGYEYLVGKFADDGGSTAQEFYTNRTLVH 185

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L  A +L P D           ++YDPTCGTGG L  A+  V   G   +    L  +GQ
Sbjct: 186 L-MAQMLKPQDG---------ESIYDPTCGTGGMLLSALAEVRRTGGDQR---TLGLYGQ 232

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKR---FHYCLSNPPF 301
           E    T ++    +++  +E          I++G TL++  F  G R   F   L+NPP+
Sbjct: 233 ERNHMTASIARMNLVLHGVE-------DFEIKRGDTLARPRFVEGDRLRTFDVVLANPPY 285

Query: 302 G-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             K+W ++    +        GR   G P        F  H+   ++ P    GR AI+ 
Sbjct: 286 SIKRWNREAWGADA------WGRNFLGTPPQGRADYAFFQHILKSMD-PET--GRCAILF 336

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF       E ++R+ L+E DL+E ++ L  +LFF + +   +    + K   R+G
Sbjct: 337 PHGVLFR----KAEQDLRQKLVEADLVECVLGLGPNLFFNSPMEACVVFCRSEKPAARKG 392

Query: 421 KVQLINATD 429
           ++  I+A +
Sbjct: 393 RILFIDAVN 401


>gi|259419466|ref|ZP_05743382.1| type I restriction-modification system, M subunit [Silicibacter sp.
           TrichCH4B]
 gi|259344707|gb|EEW56594.1| type I restriction-modification system, M subunit [Silicibacter sp.
           TrichCH4B]
          Length = 505

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 178/401 (44%), Gaps = 53/401 (13%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIARLEK 129
           F+   G SFY+   Y+     +   R N+       ++ AK   +F + DF+S  A L +
Sbjct: 74  FILPEGASFYDL--YAQRNEANIGERINIALEKIEDANRAKLEGVFRNIDFNSE-ANLGR 130

Query: 130 AGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +    +  KN         ++L P  V + ++   Y +LI RF S+  + A +F TP  V
Sbjct: 131 SKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGEFFTPAPV 190

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             L   L           +P    T+ DP CG+G  L  A   V   GS +        +
Sbjct: 191 SRLLAKLA----------APQPGNTICDPACGSGSLLIQASQEV---GSEN-----FALY 232

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG- 302
           GQE+   T A+    M +   ++  R +    +   + +  D    +RF   L+NPPF  
Sbjct: 233 GQEVNGATWALARMNMFLHAKDA-ARIEWCDTLNSPALVEADHL--QRFDVVLANPPFSL 289

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            KW  + DA   ++K     RF  G+P  S G   F+ H+   +E+     GR A+++  
Sbjct: 290 DKWGAE-DAAGDQYK-----RFWRGVPPKSKGDYAFITHM---IEIAKRQSGRVAVIVPH 340

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ER 418
             LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + I    + E      
Sbjct: 341 GVLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAILIFDRSREEGGANTD 397

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           R  V  I+A+  +T     GK + ++++    ++L+ Y +R
Sbjct: 398 RRDVLFIDASKEFTP----GKTQNVMDEVHVARVLETYATR 434


>gi|260102294|ref|ZP_05752531.1| type I restriction-modification system [Lactobacillus helveticus
           DSM 20075]
 gi|260083891|gb|EEW68011.1| type I restriction-modification system [Lactobacillus helveticus
           DSM 20075]
          Length = 540

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 207/501 (41%), Gaps = 82/501 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTMQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSEWAGETE 60

Query: 55  -VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V +KY  +     +LE  V V      +  EY  +TLG       L  Y          
Sbjct: 61  NVTQKYAQYMDPQFELEG-VSVQP----SLVEYLQNTLGYLIKPQAL--YTTLIGKIQAH 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD---------------TVPDR----- 153
            F   D S  +  LE++       ++FSG+    D               T+ D      
Sbjct: 114 TFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALN 173

Query: 154 ----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+  
Sbjct: 174 AIDLVHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ-- 231

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +RT+YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  
Sbjct: 232 --VRTIYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLMLHG 282

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +  D       +++ G TLSKD    +   F   + NPP+   W    D  +K   +   
Sbjct: 283 VSYD-----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRF 333

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             +G  LP  S     FL+H    L+      G   IVL    LF G   + E +IR+ L
Sbjct: 334 RDYGV-LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFRG---AKEGKIRQKL 385

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK- 440
           L ++ I+AI+ LP ++F  T+I T + IL   KT +    V  I+A+  +   +N+ K  
Sbjct: 386 LLDNRIDAIIGLPANIFHSTSIPTLIMILKKHKTTD---NVLFIDASREFEKDKNQNKLT 442

Query: 441 ----RRIINDDQRRQILDIYV 457
               ++I+   Q RQ +D Y 
Sbjct: 443 AANIQKIVTTYQNRQDVDKYA 463


>gi|161503348|ref|YP_001570460.1| hypothetical protein SARI_01421 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864695|gb|ABX21318.1| hypothetical protein SARI_01421 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 507

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L  + ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRHLLEDFAGEALNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H+     L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHNSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F++H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFILHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  +++D  R
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKA----GKNQNQLSEDNIR 427

Query: 451 QILDIYVSREN 461
            I+  Y + +N
Sbjct: 428 TIVKTYRNGDN 438


>gi|227533323|ref|ZP_03963372.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227189042|gb|EEI69109.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 538

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 134/527 (25%), Positives = 214/527 (40%), Gaps = 82/527 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V +KY  +     +LE  V V      +  EY  +TLG       L  Y          
Sbjct: 61  NVTQKYAQYMDPQFELEG-VSVQP----SLVEYLQNTLGYLIQPQAL--YTTLIGKIQAH 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD---------------TVPDR----- 153
            F   D S  +  LE++       ++FSG+    D               T+ D      
Sbjct: 114 TFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALN 173

Query: 154 ----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+  
Sbjct: 174 AIDLVHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ-- 231

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +RT+YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  
Sbjct: 232 --VRTIYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLMLHG 282

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +  D       +++ G TLSKD    +   F   + NPP+   W    D  +K   +   
Sbjct: 283 VSYD-----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRF 333

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             +G  LP  S     FL+H    L+      G   IVL    LF G   + E +IR+ L
Sbjct: 334 RDYGV-LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFRG---AKEGKIRQKL 385

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK- 440
           L ++ I+AI+ LP ++F  T+I T + IL   KT +    V  I+A+  +   +N+ K  
Sbjct: 386 LLDNRIDAIIGLPANIFHSTSIPTLIMILKKHKTTD---DVLFIDASREFEKDKNQNKLT 442

Query: 441 ----RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
               ++I+   Q RQ +D Y    +    +  DY     R +    P
Sbjct: 443 AVNIQKIVTTYQNRQDVDKYAHVASPAEIKANDYNLNIPRYVDTFEP 489


>gi|148266054|ref|YP_001232760.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146399554|gb|ABQ28187.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 824

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 59/460 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGSNIDLES 71
           ++  +DL G+   +++ + I     L+RL    +  R  +    +EK +A       L +
Sbjct: 14  FRACDDLRGNMDASEYKEYIFGMLFLKRLSDLFDQEREQLAKDLKEKGMAEAVIAGQLNN 73

Query: 72  FVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSD-NAKA---IFEDFDFSSTIA 125
             K   Y+F+   E   S +    TN   NL   + +  D N  A   + +  +F+  I 
Sbjct: 74  PDK---YTFFVPEEAHWSNIRHLKTNVGTNLNKALEALEDANVDALQDVLKGINFNKKIG 130

Query: 126 -RLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            R      L    +NF  I L  +    PD ++   YE+LI+ F     + A +F +P D
Sbjct: 131 QRSLDDDTLANFIQNFEKIPLRDENFEFPD-LLGAAYEYLIKYFADSAGKKAGEFYSPAD 189

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV     ++ DP        PGM  ++YDPTCG+GG L    ++V +CG     P  L  
Sbjct: 190 VVRTLVEIV-DP-------QPGM--SVYDPTCGSGGMLIQTRDYVRECGGD---PRDLAL 236

Query: 243 HGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            GQE    T ++C   ML+  +E +D R++ +    Q    + +L   +R    L+NPPF
Sbjct: 237 AGQESIGTTWSICKMNMLLHGIEHADIRQEDTLRHPQHKAENNEL---QRHDRVLANPPF 293

Query: 302 GKKW-EKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIV 359
            + + +KD D           GRF   LP K     ++F+ H+   L+      G+ A V
Sbjct: 294 SQNYIKKDIDYP---------GRFAVWLPEKGKKADLMFVQHMLAVLK----ADGKMATV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---E 416
           +    LF    G  E   RR  +E+  +EA++ LP  LF+ T I   + +++ +     +
Sbjct: 341 MPHGVLFR---GGEEKAARRHFIEHGWLEAVIGLPAGLFYGTGIPACVLVMNKKDAGSGD 397

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             R  V  INA   +     EGK +  +  +   +I+  Y
Sbjct: 398 NVRDHVFFINADREY----REGKAQNFLRPEDISKIVHAY 433


>gi|324115001|gb|EGC08966.1| type I restriction-modification system [Escherichia fergusonii
           B253]
          Length = 518

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 202/479 (42%), Gaps = 70/479 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSN 66
           A L   IW  A D+ G     DF + +L     R +         A  E   Y A   S 
Sbjct: 8   AELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEAGDESIHYAALDDSI 67

Query: 67  I--DL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
           I  D+ +  ++  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIRTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G+ L + +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNSRLAAVLKGVEGLNLGNFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H      +H I      +GQE+   T  +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 HF----DNHIIEEGF--YGQEINHTTFNLARMNMFLHNINYDKF-----DIRLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFGDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T IA  + +LS  KT+     VQ I+A+ L+    N      I+ D    QI+ ++ S+
Sbjct: 393 TTIAVNILVLSKHKTDT---SVQFIDASGLFKKETN----NNILTDGHIEQIMQVFASK 444


>gi|332674320|gb|AEE71137.1| type I restriction enzyme M protein [Helicobacter pylori 83]
          Length = 820

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 203/473 (42%), Gaps = 59/473 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L+ +    +  R+  +           +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYIS---DKARNDAKN----------N 52

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+     
Sbjct: 53  TYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNTKL 109

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 110 GEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 170 VSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------LTI 215

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 216 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 270

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 271 PPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 327 GAVILPHGVLFRGNA---EGTIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 384 RARKG-VFMIDAS---KDFKKDGNKSRLREQDVQKMIDTFNALKEIPYYSKMV 432


>gi|261838807|gb|ACX98573.1| type I R-M system modification subunit [Helicobacter pylori 51]
          Length = 816

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 202/473 (42%), Gaps = 63/473 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKARN-N 48

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+     
Sbjct: 49  TYSEIEVPKGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------LSI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+C   M+   L +    D++K     STLS   F      + F Y ++N
Sbjct: 212 YGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTLSNPFFIKNGMLQTFDYVVAN 266

Query: 299 PPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+
Sbjct: 267 PPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGK 322

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L     
Sbjct: 323 GAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 379

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R+G V +I+A+      + +G K R+   D ++ I      +E   +S+M+
Sbjct: 380 RARKG-VFMIDAS---KDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMV 428


>gi|85711390|ref|ZP_01042449.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Idiomarina baltica OS145]
 gi|85694891|gb|EAQ32830.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Idiomarina baltica OS145]
          Length = 511

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 174/370 (47%), Gaps = 44/370 (11%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELH--PDTVPD-RVM 155
           E+      D  K++F+D  F++     EK    +L  + ++F+  EL+  P  V    V+
Sbjct: 106 EANGTKLKDAGKSVFQDISFNTDKLGEEKQKNDILRHLLEDFAKPELNLKPSRVGSLDVI 165

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N YE+LI+ F +   + A +F TP ++  L  A LLDP        PG   ++ DP CG
Sbjct: 166 GNAYEYLIKHFAASGGQKAGEFYTPPEISDL-IAELLDP-------QPG--DSICDPACG 215

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      V    +H      L   GQE    T ++    M +   E + + +    
Sbjct: 216 SGSLLMKCGRKV--IANHDSKEYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWGDT 270

Query: 276 IQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I+    L K  DL     F    +NPPF   KW  D      + +N +  RF  G+P  +
Sbjct: 271 IRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------DAENDKFSRFRRGVPPKT 321

Query: 333 DGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            G   F++H+   L+   +   GGR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 322 KGDYAFILHMIETLKPASSSKRGGRMGVVVPHGVLFRG---SKEGKIRQQLIDENLLDAV 378

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + +    K+++   KV  I+A+  + S    GK +  ++DD  +
Sbjct: 379 IGLPEKLFYGTGIPAAILVFKKSKSDD---KVLFIDASREFKS----GKNQNQLSDDNIQ 431

Query: 451 QILDIYVSRE 460
           +I+D Y SRE
Sbjct: 432 KIVDTYHSRE 441


>gi|170768502|ref|ZP_02902955.1| type I restriction-modification system, M subunit [Escherichia
           albertii TW07627]
 gi|170122606|gb|EDS91537.1| type I restriction-modification system, M subunit [Escherichia
           albertii TW07627]
          Length = 539

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 191/449 (42%), Gaps = 62/449 (13%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESF 72
            +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F
Sbjct: 18  ILWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVF 73

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIA 125
            +     FY   E   S +     ++++        S I   +   K    D  FS    
Sbjct: 74  YQQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL 132

Query: 126 RLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ 
Sbjct: 133 ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKC 192

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L T +L +P              +YDP CG+ G    ++  V    SH      +  
Sbjct: 193 VVTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIAL 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPP 300
           +GQEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPP
Sbjct: 239 YGQELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           F  K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  
Sbjct: 291 FNLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGF 339

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE- 417
           VL++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  + 
Sbjct: 340 VLANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADP 397

Query: 418 ------RRGKVQLINATDLWTSIRNEGKK 440
                 R+G+   I+A +L T I    K+
Sbjct: 398 TKGYRNRQGETLFIDARNLGTMISRTTKE 426


>gi|261339076|ref|ZP_05966934.1| hypothetical protein ENTCAN_05288 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318911|gb|EFC57849.1| ribosomal protein L11 [Enterobacter cancerogenus ATCC 35316]
          Length = 539

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 186/447 (41%), Gaps = 60/447 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY       S +     ++NL        S I   +   K    D  FS      
Sbjct: 76  QDNI-FYLPEAARWSFIKQNAKQDNLAVLIDTALSTIEKRNPTLKGALPDNYFSRQNLET 134

Query: 128 EKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ VV
Sbjct: 135 KKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVV 194

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +L +P              +YDP CG+ G    ++  V    SH      +  +G
Sbjct: 195 TLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG 302
           QEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF 
Sbjct: 241 QELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPFN 292

Query: 303 -KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            K W  D +  E         RF G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 293 LKDWRNDAELTEDP-------RFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSMSSNT--SGEGEIRARMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKK 440
               R+G+   I+A +L T +    K+
Sbjct: 400 GYRNRQGETLFIDARNLGTMMNRTTKE 426


>gi|307608918|emb|CBW98318.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Legionella pneumophila 130b]
          Length = 533

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 172/366 (46%), Gaps = 55/366 (15%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRV-----MSNIYEH 161
           DNAK++F+D  F++     EK    +L  + ++F+  EL  +  P RV     + N YE+
Sbjct: 141 DNAKSVFQDISFNTDKLGEEKQKNTILRHLLEDFAKPEL--NLRPSRVAGLDIIGNAYEY 198

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI+ F +   + A +F TP +V  L  A LLDP        PG   ++ DP CG+G  L 
Sbjct: 199 LIKHFAASGGQKAGEFYTPPEVSSL-MATLLDP-------QPG--DSICDPACGSGSLLM 248

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                + +  +HH+    L   GQE    T ++    M +   ++         I+ G T
Sbjct: 249 KCGRLIRE--NHHQKNYALF--GQEAIGSTWSLAKMNMFLHGEDN-------HKIEWGDT 297

Query: 282 LSKDLFTGKRFHYCL-----SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +        + H  L     +NPPF   KW  +      E +N   GRF  G+P  + G 
Sbjct: 298 IRNPKLLDSKGHLMLFDIVTANPPFSLDKWGHE------EAENDHFGRFRRGIPPKTKGD 351

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H+   L+ P  G  R  +V+    LF G   S E +IR+ L+E +L++ ++ LP 
Sbjct: 352 YAFILHMIETLK-PKTG--RMGVVVPHGVLFRG---SSEGKIRQKLIEENLLDTVIGLPE 405

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            LF+ T I   + I   +K+++   KV  I+A   + S    GK +  ++ D   +I++ 
Sbjct: 406 KLFYGTGIPAAILIFKKQKSDD---KVLFIDAAKEFKS----GKNQNQLSQDNIDKIIET 458

Query: 456 YVSREN 461
           Y  R++
Sbjct: 459 YKQRQS 464


>gi|327490259|gb|EGF22047.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1058]
          Length = 512

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 208/467 (44%), Gaps = 73/467 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG-GSNIDLE 70
           +W  A+ L G    +++ KVI+    L+ +  A E       EKY   LA G G   D +
Sbjct: 26  LWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFE-------EKYQQLLAEGDGFENDPD 78

Query: 71  SFVK--------VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
           ++ +        +A + F  +  +S S +G+        +E    S  +    I+   D 
Sbjct: 79  AYSEENIFFVPEIARWQFIASHAHS-SEIGTVLDEAMREIEEDNPSLENVLPQIYASPDL 137

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +        L ++   F+ I+++       ++   YE+ I +F +   +   +F TP
Sbjct: 138 DKRV--------LGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGGEFYTP 189

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V     +L           P   R +YDP CG+GG    +   + +   H      L
Sbjct: 190 TSIVKTIVEIL----------KPYRGR-VYDPACGSGGMFVQSAKFIEN---HSGNINNL 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE   +T  +    M+IR +++D          Q ++   DL    + +Y ++NPP
Sbjct: 236 SVFGQESNADTWKMAKMNMVIRGIDADFGE------HQANSFFNDLHPTLKANYIMANPP 289

Query: 301 FG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F    W  DK  D +          R+  G P  S+ +  ++ H+ + ++ P NG  +  
Sbjct: 290 FNISNWGADKLQDDI----------RWKYGTPPNSNANYAWIQHMIHHMD-PSNG--KVG 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K ++
Sbjct: 337 LVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFIS--KNKK 392

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           ++GK   I+A ++   I    +K R  +D+  +++ D + + +NG  
Sbjct: 393 QKGKTLFIDARNMGEMID---RKHRDFSDEDIKKLADTFEAFQNGNL 436


>gi|187477055|ref|YP_785079.1| type i restriction enzyme EcoR124II M protein [Bordetella avium
           197N]
 gi|115421641|emb|CAJ48151.1| type i restriction enzyme EcoR124II M protein [Bordetella avium
           197N]
          Length = 519

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 204/489 (41%), Gaps = 85/489 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A+L   IW  A D+ G     DF + +L     R +        S     Y+  G +++D
Sbjct: 8   AALQRKIWDIANDVRGAVDGWDFKQYVLGALFYRFI--------SENFIDYITGGDASMD 59

Query: 69  LESF--------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------S 108
             +               +K  GY  Y  S+  ++   + NT  NL + +A+       S
Sbjct: 60  YAAMPDNDENIAAAKDDAIKTKGYFIY-PSQLFVNVAANANTNENLNTDLANIFAAIEAS 118

Query: 109 DNA-------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVM 155
            N        K +F DFD +S   RL     +K   L K+ K  + ++    D     + 
Sbjct: 119 ANGYPSERDIKGLFADFDTTSN--RLGNTVKDKNDRLSKVLKRVAELDFGGFDASHIDLF 176

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP+ V  L   L      A+ K++   +  +YDP CG
Sbjct: 177 GDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQL------AMHKQTS--VNKIYDPACG 228

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A  H       H I       GQE+   T+ +    M +  +  D       N
Sbjct: 229 SGSLLLQAKKHF----DQHLIEDGFF--GQEINHTTYNLARMNMFLHNVNYDKF-----N 277

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           IQ G+TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S
Sbjct: 278 IQLGNTLIEPHFGEDKPFDAIVSNPPYSVKWIGGDDPTLINDE-----RFAPAGVLAPKS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 333 KADFAFVLHALNYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVIS 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LF+ T IA  + +L+  K +      Q I+A+ L+    N      ++ D    QI
Sbjct: 386 LAPNLFYGTTIAVNILVLAKNKKDT---TTQFIDASGLFKKETN----NNVLLDSHIEQI 438

Query: 453 LDIYVSREN 461
           + ++ S++N
Sbjct: 439 MAVFDSKDN 447


>gi|325690777|gb|EGD32778.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK115]
          Length = 513

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 208/467 (44%), Gaps = 73/467 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG-GSNIDLE 70
           +W  A+ L G    +++ KVI+    L+ +  A E       EKY   LA G G   D +
Sbjct: 26  LWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFE-------EKYQQLLAEGDGFENDPD 78

Query: 71  SFVK--------VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
           ++ +        +A + F  +  +S S +G+        +E    S  +    I+   D 
Sbjct: 79  AYSEENIFFVPEIARWQFIASHAHS-SEIGTVLDEAMREIEEDNPSLENVLPQIYASPDL 137

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +        L ++   F+ I+++       ++   YE+ I +F +   +   +F TP
Sbjct: 138 DKRV--------LGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGGEFYTP 189

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V     +L           P   R +YDP CG+GG    +   + +   H      L
Sbjct: 190 TSIVKTIVEIL----------KPYRGR-VYDPACGSGGMFVQSAKFIKN---HSGNINNL 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE   +T  +    M+IR +++D          Q ++   DL    + +Y ++NPP
Sbjct: 236 SVFGQESNADTWKMAKMNMVIRGIDADFGE------HQANSFFNDLHPTLKANYIMANPP 289

Query: 301 FG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F    W  DK  D +          R+  G P  S+ +  ++ H+ + ++ P NG  +  
Sbjct: 290 FNISNWGADKLQDDI----------RWKYGTPPNSNANYAWIQHMIHHMD-PSNG--KVG 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K ++
Sbjct: 337 LVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFIS--KNKK 392

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           ++GK   I+A ++   I    +K R  +D+  +++ D + + +NG  
Sbjct: 393 QKGKTLFIDARNMGEMID---RKHRDFSDEDIKKLADTFEAFQNGNL 436


>gi|307721265|ref|YP_003892405.1| type I restriction-modification system, M subunit [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979358|gb|ADN09393.1| type I restriction-modification system, M subunit [Sulfurimonas
           autotrophica DSM 16294]
          Length = 520

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 181/395 (45%), Gaps = 46/395 (11%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFSST-IARL 127
           E F  VA     +T+ + L  L     RN  +S +   S D+ + +FED D +ST + + 
Sbjct: 94  ELFSAVAKRGNSDTNNFILEDLTGI-LRNIEQSTMGHESEDDFEHLFEDLDLTSTKLGKT 152

Query: 128 EKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           E+A   L+ K+  +   I+         V+ + YE+LI +F S   + A +F TP+ V  
Sbjct: 153 EEAKNKLIAKVLSHLDKIDFELKNHDRDVLGDAYEYLIAQFASGAGKKAGEFYTPQQVSK 212

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   ++ +    L        +++YDPTCG+G  L      V D  +          +GQ
Sbjct: 213 ILAKIVTNKKTKL--------KSVYDPTCGSGSLLLRVAKEVQDVSNF---------YGQ 255

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL   T+ +    M++  +     R    +I+Q  TL       KRF   ++NPPF   W
Sbjct: 256 ELNRTTYNLARMNMIMHDVH---YRKF--DIKQEDTLENPQHRDKRFEAIVANPPFSAHW 310

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +   +  +       ++G   PK S     F+ H+  +L+      G  A+VL    L
Sbjct: 311 SANPLFMSDDR----FSQYGKLAPK-SKADYAFVQHMIYQLD----DNGTMAVVLPHGVL 361

Query: 366 FNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           F G A   E  IRR+L+E+ + ++A++ LP ++F+ T+I T   IL  +K  E    V  
Sbjct: 362 FRGAA---EGHIRRYLIEDRNYLDAVIGLPANIFYGTSIPT--CILVFKKCREDSENVLF 416

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           I+A++ +   +N+     ++ D+   +I+  +  R
Sbjct: 417 IDASNEFEKAKNQN----VLTDENIDKIITTFKER 447


>gi|306815459|ref|ZP_07449608.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Escherichia coli NC101]
 gi|305851121|gb|EFM51576.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Escherichia coli NC101]
          Length = 539

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 191/448 (42%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R+K +A G ++ +++E F 
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFE----ARRKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+G+   I+A +L T I    K+
Sbjct: 399 KGYRDRQGETLFIDARNLGTMISRTTKE 426


>gi|331681143|ref|ZP_08381780.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
 gi|331081364|gb|EGI52525.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
          Length = 539

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 193/448 (43%), Gaps = 62/448 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E TR   R+K +A G ++ +++E F 
Sbjct: 19  LWDAANQLRGSVESSEYKHVVLSLVFLKFISDKFE-TR---RKKMIADGQADFLEMEVFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           +     FY   E   S +     ++++        S I   +   K    D  FS     
Sbjct: 75  QQDNI-FYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNQTLKGALPDNYFSRQNLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 134 TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L +P              +YDP CG+ G    ++  V    SH      +  +
Sbjct: 194 VTLLTEML-EPFQG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPF 301
           GQEL   T+ +    + IR         LS N+ +   +T   D     +  Y L+NPPF
Sbjct: 240 GQELTATTYKLAKMNLAIR--------GLSANLGERPANTFFSDQHPDLKADYILANPPF 291

Query: 302 G-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W  + +  +         RF G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 292 NLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFV 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K     
Sbjct: 341 LANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPA 398

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKK 440
               +R+G+   I+A +L T I    K+
Sbjct: 399 KGYRDRQGETLFIDARNLGTMISRTTKE 426


>gi|154249204|ref|YP_001410029.1| type I restriction-modification system, M subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153140|gb|ABS60372.1| type I restriction-modification system, M subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 814

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 210/487 (43%), Gaps = 57/487 (11%)

Query: 4   FTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
            TG   +L      ++K A+ L G    +++ + I     L+      E  R  ++ ++ 
Sbjct: 1   MTGEKITLRQLEAHLFKAADKLRGKMDASEYKEYIFGMLFLKYASDVFEEKRRELKNEFR 60

Query: 61  AFGGSNIDLESFVK---VAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
             G S   +   ++     G +F+         +        N  N   S +   +   +
Sbjct: 61  DMGYSEEQINELLEDPNSYGDTFFVPERARWENILKLKEDVGNQLNKALSALEEANTGLE 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSE 169
            + +  DF++   +   K   L  +  +F+  +L P     PD ++   YE+L++ F   
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNNYKLIPSNFEFPD-LLGAAYEYLLKEFADS 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  V  L   L+        K   GM  ++YDPT G+GGFL +A ++V +
Sbjct: 180 AGKKGGEFYTPSHVKKLMVRLV--------KPREGM--SIYDPTVGSGGFLIEAFHYVEE 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      L  +GQEL   T ++C   M++  +           I+    L+  +F  
Sbjct: 230 QGQN---SANLALYGQELNGLTWSICKMNMILHGIND-------AQIENEDVLTNPMFLE 279

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               K+F   L+NPPF + + +      +  K G    F P   K +D  ++FL H+   
Sbjct: 280 NGYIKKFDRILANPPFSENYSRANMQFTERFKYG----FTPENGKKAD--LMFLQHMIAS 333

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  A V+    LF  R+G  E  IR  ++ +DLIEAI+ LP  LF+ T I  
Sbjct: 334 LK----DNGVMATVMPHGVLF--RSGQ-EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPA 386

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKF 464
            + +++  K E  + K+  INA   +     EG+ +  +  +   +I+ ++   +E  K+
Sbjct: 387 CIIVINKNKPENLKNKILFINADREY----GEGRNQNFLRPEDIEKIVTVFEEKKEIPKY 442

Query: 465 SRMLDYR 471
           S+++D +
Sbjct: 443 SKLVDIK 449


>gi|88856340|ref|ZP_01130999.1| type I restriction-modification system methylation subunit [marine
           actinobacterium PHSC20C1]
 gi|88814424|gb|EAR24287.1| type I restriction-modification system methylation subunit [marine
           actinobacterium PHSC20C1]
          Length = 507

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 144/324 (44%), Gaps = 39/324 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +F D ++S+T    E A  L K+   F  + L P+     ++   YE+L+R F     +
Sbjct: 118 GVFGDVNWSNTDRLPESA--LTKLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TPR VVHL   LL           P    ++ DP CG+ G L + +N V   G 
Sbjct: 176 KAGEFFTPRHVVHLLVKLL----------QPQSGDSVCDPACGSAGMLVETVNAVDASGG 225

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-----LSKDLF 287
             +    L  +GQE    T A+    + +   ES         I +G T     L  +  
Sbjct: 226 DSRT---LTLYGQEFNLTTAAMARMNLYLHGQES-------FQIMRGDTFREPKLLDEAG 275

Query: 288 TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             ++F   ++NPPF  + W  D  A +   +       G  +P  ++G   ++ H+ + +
Sbjct: 276 QLRKFDVVIANPPFSLRNWGADMWARDPYKR-----AIGGEVPPPANGDWAWIQHMVSTI 330

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +   +  GRA I++    LF G     E+ IR   +   L+EA++ LPT+LF+ T+I   
Sbjct: 331 K---DDTGRAGIIMPHGALFRG---GKEAAIREHFVRTGLLEAVIGLPTNLFYSTSIQVC 384

Query: 407 LWILSNRKTEERRGKVQLINATDL 430
           + I    K  ER  KV  I+A  L
Sbjct: 385 ILIFRKNKLAERVNKVMFIDAKSL 408


>gi|194436633|ref|ZP_03068734.1| type I restriction-modification system, M subunit [Escherichia coli
           101-1]
 gi|194424665|gb|EDX40651.1| type I restriction-modification system, M subunit [Escherichia coli
           101-1]
          Length = 528

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEALNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H+     L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHNSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFISHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  +++D  R
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKA----GKNQNQLSEDNIR 427

Query: 451 QILDIYVSREN 461
            I+  Y + +N
Sbjct: 428 TIVKTYRNGDN 438


>gi|35381318|gb|AAQ84546.1| type I restriction-modification enzyme subunit M [Klebsiella
           pneumoniae]
          Length = 877

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 156/348 (44%), Gaps = 45/348 (12%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F G++L  + V  D ++ + YE+L+R F +E  +    F TP +V  +   ++
Sbjct: 171 LSKLVAIFEGLDLSANRVDGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 230

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                 + KE+P    T+YDPTCG+G  L  A +           P  L  +GQE++  T
Sbjct: 231 -----GISKETP-QDATVYDPTCGSGSLLLKASDEAG--------PKGLTIYGQEMDYAT 276

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK-W 305
            A+    M++         + +  I +G+TL+   +       K F + ++NPPF  K W
Sbjct: 277 SALARMNMILHD-------NATAKIWKGNTLADPHWKDGNDNLKTFDFAVANPPFSNKNW 329

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
               DA      N    RF  G P   +G   FL+H+   L+      G+ A++L    L
Sbjct: 330 TSGLDAA-----NDTFDRFVWGTPPEKNGDYAFLLHIIKSLK----STGKGAVILPHGVL 380

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER----RGK 421
           F G A   E+ IR  LL+   I+ I+ LP +LF+ T I   + ++     + R     G+
Sbjct: 381 FRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIVIDKEDAQLRAFNANGE 437

Query: 422 VQL-INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            Q  I   D       +G K R+   D  + +      +E  +FSRM+
Sbjct: 438 SQQGIFMIDASKGFIKDGNKNRLRAQDIHKIVDAFNREQEIPRFSRMV 485


>gi|205372127|ref|ZP_03224943.1| type I restriction-modification system DNA methylase [Bacillus
           coahuilensis m4-4]
          Length = 506

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +   +F TP  VV L   +L           P   R +YDP 
Sbjct: 149 VLGRVYEYFLSKFASAEGKNGGEFYTPSSVVRLLVEML----------EPYKGR-IYDPC 197

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     K+  I V +GQE  P T  +C   + IR +      D +
Sbjct: 198 CGSGGMFVQSEKFVEE--HQGKLGDIAV-YGQESNPTTWKLCKMNLAIRGI------DGN 248

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T   DL  G +  Y L+NPPF  K W  DK          E  R+  G P   
Sbjct: 249 IGTHNADTFHNDLHKGLKADYILANPPFNIKDWGGDKLR--------EDVRWQYGTPPTG 300

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   P   G A  VL++  + +    SGE EIR+ L+E DL+E IV 
Sbjct: 301 NANYAWIQHMISKL--AP--AGTAGFVLANGSMSSNT--SGEGEIRKNLIEADLVECIVT 354

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  LF+ T I   +W +S  K++     R G++  I+A  L
Sbjct: 355 LPGQLFYSTQIPVCIWFVSKNKSKTGKRTRNGEILFIDARKL 396


>gi|163847372|ref|YP_001635416.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222525218|ref|YP_002569689.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl]
 gi|163668661|gb|ABY35027.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222449097|gb|ACM53363.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl]
          Length = 528

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 191/446 (42%), Gaps = 61/446 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E TG+       +W+ A  L G     ++  V+L    L+ +  A E  R  ++      
Sbjct: 12  ETTGANLGFEPQLWQTANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHRERLQNI---- 67

Query: 63  GGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNA--KAI 114
              N D E   +  A   F+   +     L +   + N+     ++ IA   DN   K +
Sbjct: 68  --PNADPEDPDEYRADNVFWVPPDARWVELRNNARQPNIGELIDQAMIAVERDNPSLKGV 125

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEG 173
               D++      ++ G L  +  N   I +   +   + V+  +YE+ + +F S   + 
Sbjct: 126 LPK-DYARPALDQQRLGQLIDLVSN---IPVGTASARSKDVLGRVYEYFLSQFASAEGKK 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVAD 229
             +F TPR VV L   +L           P   R +YDP CG+ G    ++     H   
Sbjct: 182 GGEFYTPRCVVRLLVEML----------EPYQGR-VYDPCCGSAGMFIQSVEFIEAHATG 230

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G+  +    +  +GQEL   T  +    + IR ++          I+QG T   D F  
Sbjct: 231 NGNGSRARARISIYGQELNYTTWRLAKMNLAIRGIDG--------RIEQGDTFRNDRFPD 282

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +  Y L+NPPF  K+W  ++   +K        R+  G+P + + +  ++ H+ + L  
Sbjct: 283 LKADYILANPPFNMKEWGGEQLRNDK--------RWQYGIPPVGNANFAWVQHIVHHLA- 333

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A  VL++  + + +  SGE EIRR L+E DL++ +VALP  LF+ T I   LW
Sbjct: 334 ---PAGVAGFVLANGSMSSNQ--SGEGEIRRKLIEADLVDCMVALPGQLFYSTQIPACLW 388

Query: 409 ILS----NRKTEERRGKVQLINATDL 430
            L+    N K  +RR ++  I+A  L
Sbjct: 389 FLARNRNNGKFRDRRKQILFIDARRL 414


>gi|239637508|ref|ZP_04678481.1| type I restriction-modification system, M subunit [Staphylococcus
           warneri L37603]
 gi|239596903|gb|EEQ79427.1| type I restriction-modification system, M subunit [Staphylococcus
           warneri L37603]
          Length = 518

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 162/355 (45%), Gaps = 51/355 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRF 166
            +F D D SST  RL     ++  L+ K+  + S +  +H D   D ++ + YE LI RF
Sbjct: 136 GLFSDMDLSST--RLGNTVKDRTALIGKVMVHLSELPFVHSDMEID-MLGDAYEFLIGRF 192

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP+ V  +   ++    D L        R +YDPTCG+G  L      
Sbjct: 193 AANAGKKAGEFYTPQQVSKILAKIVTQGKDKL--------RNVYDPTCGSGSLLLR---- 240

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
               G   K+      +GQE    T+ +    ML+  +     R  + +IQ G TL    
Sbjct: 241 ---VGKETKVYRY---NGQERNNTTYNLARMNMLLHDV-----RYENFDIQNGDTLENPA 289

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F  ++F   ++NPP+   W  D    + E +    G+  P    +      F+ H+ + L
Sbjct: 290 FMDEKFDAVVANPPYSAHWSADSKFNDDE-RFSNYGKLAP----VKKADYAFVQHMIHYL 344

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIAT 405
           +      G  A+VL    LF  +A   E  IRR+L+ E + ++A++ LP +LFF T I+T
Sbjct: 345 D----DEGTMAVVLPHGVLFRSQA---EGVIRRYLIEEKNYLDAVIGLPNNLFFGTPIST 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              IL  +K  E    V  I+A+  +     +GK +  + DD   +I+D Y  RE
Sbjct: 398 --CILVFKKCREIDDNVLFIDASQSF----EKGKNQNHLTDDDVNKIVDTYSKRE 446


>gi|167752725|ref|ZP_02424852.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216]
 gi|167659794|gb|EDS03924.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216]
          Length = 529

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 60/351 (17%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           G+L  +    + I+  P    D  ++  +YE+ ++ F     +   +F TP  +V L  A
Sbjct: 144 GVLKSVVDEINKID--PQKFNDHDLIGRVYEYFLQAFSINTDKEEGEFYTPHSIVEL-IA 200

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            L++P D           T+YDP CG+GG    A   +   G + K   +   +GQE EP
Sbjct: 201 SLIEPFDG----------TVYDPCCGSGGMFVQAAKFIEAHGGNTKAVNV---YGQESEP 247

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T+ +    + IR +            +  ST S D     +F Y ++NPPF  K     
Sbjct: 248 ATYRLAKMNLAIRGIS------YHLGDRAVSTFSDDQHKELKFDYIMANPPFNLK----- 296

Query: 310 DAVEKEHKNGELGRF-------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  K  E G F       G G+P  S+ +  +++H+ NKL +     G A  +L++
Sbjct: 297 -------KYAEYGGFETDSRWQGYGVPPTSNANYAWILHILNKLNV---SRGIAGFLLAN 346

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------R 413
             L +    S   EIR+ L+E+D +EAI+ LP ++F+ T+I+  LWIL+N         R
Sbjct: 347 GALDD----SDTLEIRKLLIESDKVEAIIVLPRNMFYSTDISVTLWILNNNKKGGPWHGR 402

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           +   R G++  I+    W S   E K  R+   D  R +  IY + +   F
Sbjct: 403 QLRNRTGEILFIDLR-TWNSNIYEKKYVRLTEADIDR-VRQIYFNWQTENF 451


>gi|262383640|ref|ZP_06076776.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294538|gb|EEY82470.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 530

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 199/473 (42%), Gaps = 75/473 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +   +WK  + L G  + +++  V+L    L+      E  R  +          N  LE
Sbjct: 14  MEEVLWKACDALRGSIEPSEYKHVVLSLIFLKYAGFHFEKRRQEI---------VNDGLE 64

Query: 71  SFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD---------- 119
            FV  V  Y+  N      +        N+ +  IAS  D A +  E  +          
Sbjct: 65  DFVDNVEFYAAKNVFYLPETARWPYLKENSKQPNIASIVDKALSDIEKENKPLRGALPNN 124

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +SS     EK G L      F  I    D   + ++  +YE+ + +F  +  +G  +F 
Sbjct: 125 YYSSLGIEAEKLGSLLDKIDGFDTILESADG--NDIIGRVYEYFLSKFAIKEGKGKGEFY 182

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ +V+L  A +++P +            +YDP CG+GG    +M  V    SHH    
Sbjct: 183 TPKTIVNL-IAEMIEPYEG----------KIYDPCCGSGGMFVQSMKFVE---SHHGNRR 228

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE    T  +    + IR + +D   D + N     T + D     +  + ++N
Sbjct: 229 KVSVYGQEYTKTTFKLAKMNLAIRGIAAD-LGDYAAN-----TFTDDRHKDLKADFIMAN 282

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF +K W  D    +    +G        +P  S+ +  +++++ +KL    +  G A 
Sbjct: 283 PPFNQKDWRADNQLTDDPRWDGY------DVPPTSNANYAWILNMVSKL----SSNGVAG 332

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            +L++  L    A   E EIRR ++E  L+EAIV LP +LF+ T+I+  LWI++  K   
Sbjct: 333 FILANGAL---SADGTEGEIRRKMIERGLVEAIVILPRNLFYSTDISVTLWIINANK--- 386

Query: 418 RRGKVQLINATD----------LWTSIRNEG----KKRRIINDDQRRQILDIY 456
            +G++   N  D          L+  +R  G    KK     D+  R++ D Y
Sbjct: 387 -KGRLVNRNGEDIHYRDREKEILFIDMRQMGEPFEKKYVRFTDEDIRKVADTY 438


>gi|28867248|ref|NP_789867.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850482|gb|AAO53562.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 568

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 224/514 (43%), Gaps = 76/514 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGS 65
           S  +L +++W++A  L G    +DF   I     L+R     +   + +RE+  L++G +
Sbjct: 38  SLETLESWLWESANILRGSIDSSDFKNYIFGLLFLKRYNDVFDERVTKLREEENLSYGEA 97

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS-T 123
             ++E       +  Y  S      +  T N    L+   A+   N   +      +   
Sbjct: 98  QEEIED-----KWGKYPISARWFDLISRTENIGEALDKAFATIEANNPELQHVLTATQYG 152

Query: 124 IARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             R+     L ++ ++F+  +L + D     ++ + YE+LI++F  +  +   +F TP+ 
Sbjct: 153 DKRVLADATLQRLLRHFNQYKLGNDDLYKADMLGDAYEYLIKQFADDAGKKGGEFYTPKA 212

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPIL 240
           VV L   L+ DP        PG   ++YDPTCG+GG L ++ +HV+    G+    P +L
Sbjct: 213 VVQLVVELI-DP-------RPG--HSVYDPTCGSGGMLVESAHHVSGLPDGTLMGKPNVL 262

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFHYCL 296
           + +GQE    T A+    + +  + +        +I++G TL +    D    K F   +
Sbjct: 263 L-YGQEKNLGTWAIAKLNLYLHNMHA--------SIERGDTLVEPKHLDGDYLKTFDRVI 313

Query: 297 SNPPFGKK--WEKDKDAVEKEHKNGE-------------LGRFGPGLPKISDGSMLFLMH 341
           +NPPF  K  W   + + E E +NG+              GR   G+P      + F  H
Sbjct: 314 ANPPFSAKSWWTPLELSNENEQENGKKVKAPNYKQVSDPYGRLVYGVPPRGYADLAFAQH 373

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDLIEAIV 391
           +   L+      GR  ++L    LF  R+G  E +IR  LL            D+IEAIV
Sbjct: 374 MLASLK----ADGRMGVILPHGVLF--RSGE-EGKIREGLLFGTGAASGNQPGDVIEAIV 426

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+ LF+ T I   + IL+ +K    + KV +I+ +  +     EGK +   N      
Sbjct: 427 GLPSALFYNTGIPACVLILNKQKPSALKDKVIIIDGSRDYL----EGKAQ---NSLHAED 479

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           IL I VS     F + ++     Y R+  L  +R
Sbjct: 480 ILRI-VSTHKAAFEQQVEVEN--YCRLVTLDEIR 510


>gi|229042277|ref|ZP_04190029.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH676]
 gi|228727068|gb|EEL78273.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH676]
          Length = 530

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           V+ + YE LI +F SE  + A +F TP +V  +    A +   D  LF        +++D
Sbjct: 172 VIGDAYEFLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQEDKKLF--------SVFD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++     +H  P  +  HGQEL   T+ +    +++  ++   + D
Sbjct: 224 PTMGSGSLMLNIRNYI-----NH--PDSVKYHGQELNTTTYNLAKMNLILHGVD---KED 273

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +S  ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   P
Sbjct: 274 MS--LRNGDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGKLAP 327

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A
Sbjct: 328 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDA 379

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LFF T+I T + IL  NR T +    V  I+A++ +T  +N+ K    ++ + 
Sbjct: 380 VIGMPANLFFGTSIPTTVIILKKNRTTRD----VLFIDASNEFTKGKNQNK----LSKEN 431

Query: 449 RRQILDIYVSREN 461
             +I++ Y  RE+
Sbjct: 432 IDKIVETYKKRED 444


>gi|293417767|ref|ZP_06660389.1| type I restriction-modification system [Escherichia coli B185]
 gi|291430485|gb|EFF03483.1| type I restriction-modification system [Escherichia coli B185]
          Length = 518

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 204/481 (42%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++ S++
Sbjct: 393 TTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEKIMQVFASKK 445

Query: 461 N 461
           +
Sbjct: 446 D 446


>gi|71900226|ref|ZP_00682364.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
 gi|71729999|gb|EAO32092.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
          Length = 527

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 216/500 (43%), Gaps = 81/500 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-------CALEPTRSAVREKYLA 61
           A L   IW+ A DL G     DF   +L     R +         A EP     ++ +  
Sbjct: 10  AELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRTGNEKDDFDY 69

Query: 62  FGGSNIDLES------------------FVKV-AGYSFYNTSEYSLSTLGSTNTRNNLES 102
              S+   ES                  FV+V AG  F +    +LS + +   R    S
Sbjct: 70  AQLSDARAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIER----S 125

Query: 103 YIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------R 153
            I S S+ + K +F+D D +S+      A    K+ K    I   P T  +         
Sbjct: 126 AIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGGFTENTID 185

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L++ + S   +   +F TP++V  L T + +             +  +YDP 
Sbjct: 186 LFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITV--------VGKTEVNKVYDPA 237

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L   +N V   G H K+      +GQE+   T+ +C   M +  +  +      
Sbjct: 238 CGSGSLL---LNFVKVLG-HDKVRQGF--YGQEINLTTYNLCRINMFLHNVNYEKF---- 287

Query: 274 KNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL+    +  + F   +SNPP+  KW+ D +A+          RF P   L  
Sbjct: 288 -HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLINDP-----RFAPAGILAP 341

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A+
Sbjct: 342 KSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAV 394

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   K +        ++A+ L+      G K ++    Q++
Sbjct: 395 IQLPADLFFGTTIATCIIVLKKSKGDN---ATLFMDASSLFV---RSGTKNKLSTAHQKK 448

Query: 451 QILDIYVSREN-GKFSRMLD 469
            ILD + +R+N   F+R++D
Sbjct: 449 -ILDGFTARQNIEHFARLVD 467


>gi|2408224|gb|AAB70709.1| HsdM [Klebsiella pneumoniae]
          Length = 539

 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 185/441 (41%), Gaps = 60/441 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + ++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMEDEG---QGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 76  QDNI-FYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLET 134

Query: 128 EKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP+ VV
Sbjct: 135 KKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVV 194

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +L +P +            +YDP CG+ G    ++  V    SH      +  +G
Sbjct: 195 TLLTEML-EPFEG----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYG 240

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG 302
           QEL   T+ +    + IR         LS N+ +    T   D     +  Y L+NPPF 
Sbjct: 241 QELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPDLKADYILANPPFN 292

Query: 303 -KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            K W  D +  +         RF G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 293 LKDWRNDAELTKDP-------RFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  + +    SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSI 434
               R+G+   I+A +L T I
Sbjct: 400 GYRNRQGETLFIDARNLGTMI 420


>gi|324993827|gb|EGC25746.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK405]
 gi|324994852|gb|EGC26765.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK678]
 gi|327474702|gb|EGF20107.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK408]
          Length = 512

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 209/467 (44%), Gaps = 73/467 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG-GSNIDLE 70
           +W  A+ L G    +++ KVI+    L+ +  A E       EKY   LA G G   D +
Sbjct: 26  LWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFE-------EKYQQLLAEGDGFENDPD 78

Query: 71  SFVK--------VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
           ++ +        +A + F  +  +S S +G+        +E   +S  +    I+   D 
Sbjct: 79  AYSEENIFFVPEIARWQFIASHAHS-SKIGTVLDKAMREIEEDNSSLENVLPQIYASPDL 137

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +        L ++   F+ I+++       ++   YE+ I +F +   +   +F TP
Sbjct: 138 DKRV--------LGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGGEFYTP 189

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V     +L           P   R +YDP CG+GG    +   + +   H      L
Sbjct: 190 TSIVKTIVEIL----------KPYRGR-VYDPACGSGGMFVQSAKFIEN---HSGNINNL 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE   +T  +    M+IR +++D          Q ++   DL    + +Y ++NPP
Sbjct: 236 SVFGQESNADTWKMAKMNMVIRGIDADFGE------HQANSFFNDLHPTLKANYIMANPP 289

Query: 301 FG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F    W  DK  D +          R+  G P  S+ +  ++ H+ + ++ P NG  +  
Sbjct: 290 FNISNWGADKLQDDI----------RWKYGTPPNSNANYAWIQHMIHHMD-PSNG--KVG 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K ++
Sbjct: 337 LVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFIS--KNKK 392

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           ++GK   I+A ++   I    +K R  +++  +++ D + + +NG  
Sbjct: 393 QKGKTLFIDARNMGEMID---RKHRDFSNEDIKKLADTFEAFQNGNL 436


>gi|126661487|ref|ZP_01732540.1| type I restriction-modification system specificity subunit
           [Cyanothece sp. CCY0110]
 gi|126617230|gb|EAZ88046.1| type I restriction-modification system specificity subunit
           [Cyanothece sp. CCY0110]
          Length = 515

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 39/306 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ K+F+ I++  D   D     IYE+ + +F     +   +F TP  VV L   +L
Sbjct: 128 LLVELLKSFNKIDIDTDLEGD-AFGKIYEYFLGKFAMSEGQKGGEFFTPTSVVKLIVEIL 186

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-HGQELEPE 250
                      P   R +YDP CG+GG    + + V+    H K P   +  +GQE   E
Sbjct: 187 ----------EPYHGR-IYDPACGSGGMFVQSASFVS---KHRKNPNAEISIYGQERVTE 232

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDK 309
           T  +C   + +  L  D        I++G+T  +D+     +F + ++NPPF      + 
Sbjct: 233 TVRLCKMNLAVHGLSGD--------IKEGNTYYEDIHKSINKFDFVMANPPF------NV 278

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V+KE   G+L     G+P+  + + L++    + L    N  GRA  V+++S      
Sbjct: 279 DKVDKEKMKGDLRVDEFGMPRADNANYLWIHFFYSAL----NDNGRAGFVMANSA---SD 331

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINAT 428
           A S E EIR+ L+E  +++ ++A+ ++ F+   +   LW L   KT+  R+ KV  I+A 
Sbjct: 332 ARSSELEIRQKLIETGVVDVMIAVGSNFFYTVTLPCTLWFLDKGKTDTTRKNKVLFIDAR 391

Query: 429 DLWTSI 434
            ++  I
Sbjct: 392 HIYQQI 397


>gi|172039827|ref|YP_001799541.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171851131|emb|CAQ04107.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 528

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 148/316 (46%), Gaps = 48/316 (15%)

Query: 151 PDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           P+R   ++  +YE+ + RF S   +   +F TPR VV     +L +P +           
Sbjct: 165 PERARDLLGEVYEYFLARFASAEGKRGGEFYTPRSVVRTLVEIL-EPTEG---------- 213

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+GG    A   +    +H K P  +  +GQEL   T  +    + I  L S 
Sbjct: 214 RVYDPCCGSGGMFVQAEKFL---DAHDKDPSAIAIYGQELNERTWRLARMNLAIHALNS- 269

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
             + L +  + G T ++D+  G    Y L+NPPF  K W ++ D            R+  
Sbjct: 270 --KGLGE--RWGDTFARDIHPGVEMDYVLANPPFNIKDWVRNTDD----------KRWSY 315

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   + +  ++ H+ +KL    +  G A +V+++  + +    SGE EIR+ +LE+D+
Sbjct: 316 GVPPAKNANFGWMQHIISKL----SAQGEAGVVMANGTMTSNT--SGEGEIRKNMLEDDI 369

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKK 440
           +  +V LP  LF  T I   +W  +  K        +RRG+  LI+A +L   +    + 
Sbjct: 370 VSCVVTLPAQLFRGTQIPVCVWFFAKDKGAGSKGFVDRRGEFLLIDARELGHMV---DRT 426

Query: 441 RRIINDDQRRQILDIY 456
            R  +D+  ++I + +
Sbjct: 427 ERTFSDEDIQKIANTF 442


>gi|229176526|ref|ZP_04303955.1| Type I restriction-modification system, M subunit [Bacillus cereus
           MM3]
 gi|228606963|gb|EEK64356.1| Type I restriction-modification system, M subunit [Bacillus cereus
           MM3]
          Length = 530

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP +V  +   +      A   +    + +++DPT
Sbjct: 172 VIGDAYEFLIGQFASEAGKKAGEFYTPHEVSDMMARI------AAIGQEDKKLFSVFDPT 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++     +H  P  +  HGQEL   T+ +    +++  ++ +  R   
Sbjct: 226 MGSGSLMLNIRNYI-----NH--PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR--- 275

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 276 --LRNGDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGKLAPK- 328

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++
Sbjct: 329 SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVI 381

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +P +LFF T+I T + IL  NR T +    V  I+A++ +T  +N+ K    ++ +   
Sbjct: 382 GMPANLFFGTSIPTTVIILKKNRTTRD----VLFIDASNEFTKEKNQNK----LSKENID 433

Query: 451 QILDIYVSREN 461
           +I++ Y  RE+
Sbjct: 434 KIVETYKKRED 444


>gi|78773893|gb|ABB51238.1| type I RM system M subunit [Arthrospira platensis]
          Length = 814

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 164/340 (48%), Gaps = 39/340 (11%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L ++   F GI L  +    D ++ + YE+L+R F +E  +    F TP +V  +   +L
Sbjct: 115 LSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKGQFYTPAEVSRVVAKVL 174

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
             P +           T+YDPTCG+G  L      VAD     + P  L  +GQE++  T
Sbjct: 175 AIPPETR------QDATVYDPTCGSGSLLL----KVAD-----EAPNGLSIYGQEMDNAT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFG-KKWEKDK 309
           +++    M    + + P  ++ K+    +   K+   + KRF + ++NPPF  K W    
Sbjct: 220 YSLARMNMF---MHNHPTAEIWKDNTLAAPYWKEKDGSLKRFDFAVANPPFSYKSWSNGV 276

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D    E       RFG G+P   +G   FL+H+   L+      G+AA++L    LF G 
Sbjct: 277 DTARDE-----FNRFGYGVPPAKNGDYAFLLHILKSLK----STGKAAVILPHGVLFRGN 327

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L   +   R G + +I+A+ 
Sbjct: 328 A---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVLDKAEAATRDG-LFMIDAS- 382

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
                  +G K R+ + D  + I+D++ ++ E  ++SR++
Sbjct: 383 --KGFIKDGNKNRLRSQDIHK-IVDVFNNQLEIPRYSRLV 419


>gi|302878446|ref|YP_003847010.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302581235|gb|ADL55246.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 516

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 46/333 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATA 189
           +L ++    SGI L+ +    R ++  +YE+ + +F G+E   G E F TPR VV +   
Sbjct: 134 MLGELIDLISGIALNEEGHASRDILGRVYEYFLGQFAGAEGKRGGE-FYTPRSVVRVLVE 192

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L           P   R +YDP CG+GG    +   V + G   +I  I + +GQE   
Sbjct: 193 ML----------EPYQGR-IYDPCCGSGGMFVQSEKFVQEHGG--RIGDIAI-YGQESNY 238

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD 308
            T  +    + +R ++SD R +      +GS   KD     +  Y L+NPPF    W  D
Sbjct: 239 VTWRLAKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLKADYILANPPFNISDWGGD 292

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +          E  R+  G P + + +  +L H+ +   L PNG   A +VL++  + + 
Sbjct: 293 RLR--------EDVRWKFGAPPVGNANYAWLQHIVH--HLAPNG--TAGVVLANGSMSST 340

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQ 423
           +  SGE +IRR ++E D+++ +VALP  LF+ T I   LW L+  K       +RRG+V 
Sbjct: 341 Q--SGEGDIRREMVEKDILDCMVALPGQLFYSTQIPACLWFLARNKNPGNGWRDRRGEVL 398

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            I+A  L   +    + RR ++D   ++I D Y
Sbjct: 399 FIDARKLGVLVD---RTRRELSDADVQKIADTY 428


>gi|227510763|ref|ZP_03940812.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189765|gb|EEI69832.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 540

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 205/501 (40%), Gaps = 82/501 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V  KY  +     +LE  V V      +  EY  +TLG       L  Y          
Sbjct: 61  NVTRKYAQYMDPQFELEG-VSVQP----SLVEYLQNTLGYLIQPQAL--YTTLIGKIQAH 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD---------------TVPDR----- 153
            F   D S  +  LE++       ++FSG+    D               T+ D      
Sbjct: 114 TFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALN 173

Query: 154 ----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+  
Sbjct: 174 AIDLIHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ-- 231

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +RT+YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  
Sbjct: 232 --VRTIYDPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTYNLARMNLMLHG 282

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +  D       +++ G TLSKD    +   F   + NPP+   W    D  +K   +   
Sbjct: 283 VSYD-----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRF 333

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             +G  LP  S     FL+H    L+      G   IVL    LF G   + E +IR+ L
Sbjct: 334 RDYGV-LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFRG---AKEGKIRQKL 385

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK- 440
           L ++ I+AI+ LP ++F  T I T + IL   KT +    V  I+A+  +   +N+ K  
Sbjct: 386 LLDNRIDAIIGLPANIFHSTGIPTLIMILKKHKTTD---DVLFIDASREFEKDKNQNKLT 442

Query: 441 ----RRIINDDQRRQILDIYV 457
               ++I+   Q RQ +D Y 
Sbjct: 443 AANIQKIVTTYQNRQDVDKYA 463


>gi|88811760|ref|ZP_01127014.1| type I restriction system adenine methylase [Nitrococcus mobilis
           Nb-231]
 gi|88791151|gb|EAR22264.1| type I restriction system adenine methylase [Nitrococcus mobilis
           Nb-231]
          Length = 522

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 197/444 (44%), Gaps = 65/444 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            G      + +W  A+ L G+ + +D+  V L    L+ +  A E  R A+  + LA   
Sbjct: 20  NGGNLGFESMLWAAADKLRGNMEPSDYKHVALGLIFLKYISDAFEVKREALLAEDLA--- 76

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS--- 121
              D E ++  A   F+   E   S L +    N  ++ I    D+A    E  + S   
Sbjct: 77  DPEDPEEYL--AENVFWVPKEARWSHLQA----NAKQATIGKLVDDAMLAIEAKNASLKG 130

Query: 122 ---STIAR--LEKAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRF-GSEVSE 172
                 AR  L K  +L ++    SGI +  D   DR   ++  +YE+ +  F G+E   
Sbjct: 131 VLPKDYARPALNKV-MLGELIDLISGIGMGEDA--DRSKDILGRVYEYFLGGFAGAEGKR 187

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G E F TPR VV L   +L           P   R +YDP CG+GG    +   V + G 
Sbjct: 188 GGE-FYTPRSVVQLLVEML----------EPYKGR-VYDPCCGSGGMFVQSERFVEEHGG 235

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +I  I + +GQE    T  +C   + +R +++D R +      +GS   KD     R 
Sbjct: 236 --RIGDIAI-YGQESNYTTWRLCKMNLAVRGIDADIRWN-----NEGS-FHKDELKDLRA 286

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            Y L+NPPF    W  ++          E  R+  G+P   + +  +L H+ +   L P+
Sbjct: 287 DYVLANPPFNISDWGGERLR--------EDARWKYGVPPAGNANYAWLQHIYH--HLAPD 336

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G   A +VL+   + + +  SGE +IRR L+E D+++ ++ LP  LF+   I   LW L+
Sbjct: 337 G--SAGVVLAKGSMSSTQ--SGEGDIRRSLVEGDVVDCMIDLPGQLFYSVQIPACLWFLA 392

Query: 412 NRKT-----EERRGKVQLINATDL 430
             K       +RRG++  I+A  L
Sbjct: 393 RNKNPGNRWRDRRGEILFIDARKL 416


>gi|15839331|ref|NP_300019.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9107980|gb|AAF85527.1|AE004080_9 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 519

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 203/458 (44%), Gaps = 64/458 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           ++K A+ L G+ + +D+  V L    L+ +  A E   SA+  +         D ++   
Sbjct: 22  LFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHSALLAE---------DAQAAED 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS------STIAR-- 126
              Y  +N          S    N  +S I +  D A    E  + S         AR  
Sbjct: 73  KDEYLAHNVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEKDNPSLKHVLPKDYARPA 132

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVV 184
           L K  +L ++    SGI L+ +    + ++  +YE+ + +F G+E   G E F TPR VV
Sbjct: 133 LNKV-MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQFAGAEGKRGGE-FYTPRSVV 190

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L           P   R +YDP CG+GG    +   V + G   +I  I + +G
Sbjct: 191 RVLVQML----------EPYSGR-VYDPCCGSGGMFVQSEKFVLEHGG--RIGDIAI-YG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE    T  +    + +R ++SD R +      +GS    D     +  Y L+NPPF   
Sbjct: 237 QESNYTTWRLAKMNLAVRGIDSDIRWN-----NEGS-FHNDALRDLKADYILANPPFNIS 290

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W  D+          E  R+  G+P   + +  +L H+ +   L PNG   A +VL++ 
Sbjct: 291 DWGGDRLR--------EDVRWKFGVPPAGNANYAWLQHIYH--HLAPNG--TAGVVLANG 338

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EER 418
            + +    SGE EIR  ++E D+++ ++A+P  LF+ T I   LW L+  K       +R
Sbjct: 339 SMSSNH--SGEGEIRTHMIEADIVDCMIAMPGQLFYSTQIPACLWFLARNKNPGKGLRDR 396

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           RG+V L++A  L   +    + RR + D+  +QI D Y
Sbjct: 397 RGQVLLMDARALGVLVD---RTRRELTDEHIQQIADTY 431


>gi|291566631|dbj|BAI88903.1| type I restriction enzyme, modification chain [Arthrospira
           platensis NIES-39]
          Length = 813

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 164/340 (48%), Gaps = 39/340 (11%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L ++   F GI L  +    D ++ + YE+L+R F +E  +    F TP +V  +   +L
Sbjct: 115 LSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKGQFYTPAEVSRVVAKVL 174

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
             P +           T+YDPTCG+G  L      VAD     + P  L  +GQE++  T
Sbjct: 175 AIPPETR------QDATVYDPTCGSGSLLL----KVAD-----EAPNGLSIYGQEMDNAT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFG-KKWEKDK 309
           +++    M    + + P  ++ K+    +   K+   + KRF + ++NPPF  K W    
Sbjct: 220 YSLARMNMF---MHNHPTAEIWKDNTLAAPYWKEKDGSLKRFDFAVANPPFSYKSWSNGV 276

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D    E       RFG G+P   +G   FL+H+   L+      G+AA++L    LF G 
Sbjct: 277 DTARDE-----FNRFGYGVPPAKNGDYAFLLHILKSLK----STGKAAVILPHGVLFRGN 327

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L   +   R G + +I+A+ 
Sbjct: 328 A---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVLDKAEAATRDG-LFMIDAS- 382

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
                  +G K R+ + D  + I+D++ ++ E  ++SR++
Sbjct: 383 --KGFIKDGNKNRLRSQDIHK-IVDVFNNQLEIPRYSRLV 419


>gi|320013189|gb|ADW08037.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 461

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 140/307 (45%), Gaps = 40/307 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           DR++  +YE  + RF +    G  ++ TPR +V L   +L          +P     ++D
Sbjct: 117 DRLV-ELYEECLERFSNNKKGG--NYFTPRHLVRLLVEML----------APRQGEQVFD 163

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+GGFL ++  +V + G       ++   G+++ P    V    +  R LE+D    
Sbjct: 164 PACGSGGFLVESARYVQEHGGSSAAVGLV---GRDINPRARQVAWMNLTARGLEAD---- 216

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                +  ++L  D      F     NPPF  K  +D    +   + GE        P  
Sbjct: 217 --LGSRPVNSLWADDTPAGAFDVVFVNPPFNLKLARDDLRYDSRWRYGE--------PPR 266

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ +  ++ H+ +KL       GRAA++L     F   A +G   IRR L+ +DL+ A+V
Sbjct: 267 SNANFAWIQHVVSKLTTR----GRAAMLLPDGATFTSGAAAG---IRRGLVADDLVSAVV 319

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           ALP  LF  T+I+   WI S  K  ERRG+V  ++A      +   G+ RR +++     
Sbjct: 320 ALPAGLFPHTSISASAWIFSREKPAERRGQVLFVDARKQGNLV---GRGRRTLSEGAIES 376

Query: 452 ILDIYVS 458
           I D Y S
Sbjct: 377 IADTYRS 383


>gi|315195780|gb|EFU26162.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 378

 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 160/350 (45%), Gaps = 51/350 (14%)

Query: 118 FDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            D SST  RL     E+  L+ K+  N   +  +H D   D ++ + YE LI RF +   
Sbjct: 1   MDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRFAATAG 57

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L           
Sbjct: 58  KKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV-------- 101

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K   +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  
Sbjct: 102 --GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNT 154

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L+    
Sbjct: 155 FDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD---- 205

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T   IL
Sbjct: 206 DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CIL 260

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 261 VFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 306


>gi|242372373|ref|ZP_04817947.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
 gi|242349892|gb|EES41493.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
          Length = 518

 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 204/477 (42%), Gaps = 67/477 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVREKYLAF--GGS 65
           A L   +W  A DL G+    +F   IL     R L   +E T    + E  +++    +
Sbjct: 12  AELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSGRLLSEDNISYQEAMN 71

Query: 66  NIDLESFVK---VAGYSFYNTSEYSLSTLGS------------TNTRNNLESYIASFS-- 108
           N D    V+   +    F    E   S L +            +N   N+E+        
Sbjct: 72  NDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFEIEDLSNAIKNVENSTRGHESE 131

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIR 164
           D+   +F+D D +S+        +  L+ K+  N S +  +H D   D ++ + YE+LI 
Sbjct: 132 DDFIHLFDDMDLNSSRLGNTNAARTKLIAKVMMNISTLPFVHSDLEID-MLGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G  L    
Sbjct: 191 QFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGSLLL--- 239

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G   K+      +GQE    T+ +    ML+  +     +     I+ G TL  
Sbjct: 240 ----RVGREAKVRNY---YGQEYNSTTYNLARMNMLLHDVNFKAFQ-----IENGDTLED 287

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               G++F   ++NPP+   W  D   + K+ +  + G+  P     S     F+ H+  
Sbjct: 288 PAHKGEQFDAVVANPPYSANWSADPSFL-KDERFSDYGKLAPK----SKADFAFIQHMIY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I
Sbjct: 343 HLD----DEGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGTSI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            T + +   +K  ++   V  I+A+  +     +GK +  + D+   +I+  Y  RE
Sbjct: 396 PTCVLVF--KKCRQQDDDVVFIDASQSF----EKGKNQNHLTDEDVDKIVKTYSQRE 446


>gi|71276002|ref|ZP_00652284.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Dixon]
 gi|71899052|ref|ZP_00681217.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
 gi|71163235|gb|EAO12955.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Dixon]
 gi|71731165|gb|EAO33231.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
          Length = 527

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 213/499 (42%), Gaps = 79/499 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---------Y 59
           A L   IW+ A DL G     DF   +L     R +   L    +A   +         Y
Sbjct: 10  AELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRTGTEKDDFDY 69

Query: 60  LAFGGSNIDL----------------ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLES 102
             F  +  +L                E FV+V AG  F +    +LS + +   R    S
Sbjct: 70  AQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIER----S 125

Query: 103 YIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------R 153
            I S S+ + K +F+D D +S+      A    K+ K    I   P T  +         
Sbjct: 126 AIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGGFTENTID 185

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L++ + S   +   +F TP++V  L T + +             +  +YDP 
Sbjct: 186 LFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITV--------VGKTEVNKVYDPA 237

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L   +N V   G H K+      +GQE+   T+ +C   M +  +  +      
Sbjct: 238 CGSGSLL---LNFVKVLG-HDKVRQGF--YGQEINLTTYNLCRINMFLHNVNYEKF---- 287

Query: 274 KNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL+    +  + F   +SNPP+  KW+ D +A+          RF P   L  
Sbjct: 288 -HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLINDP-----RFAPAGILAP 341

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A+
Sbjct: 342 KSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAV 394

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   K +        ++A+ L+      G K ++    Q++
Sbjct: 395 IQLPADLFFGTTIATCIIVLKKSKGDN---ATLFMDASSLFV---RSGTKNKLSTAHQKK 448

Query: 451 QILDIYVSRENGKFSRMLD 469
            +  + V ++   F+R++D
Sbjct: 449 ILDSLTVRQDIEHFARLVD 467


>gi|258509976|ref|YP_003175639.1| Type I restriction modification system protein HsdMI, M subunit
           [Lactobacillus rhamnosus Lc 705]
 gi|257152817|emb|CAR91788.1| Type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 540

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 206/503 (40%), Gaps = 86/503 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V +KY  +     +LE  V V      +  EY  +TLG       L  Y          
Sbjct: 61  NVTQKYAQYMNPQFELEG-VSVQP----SLVEYLQNTLGYLIQPQAL--YATLIGKIQAH 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD---------------TVPDR----- 153
            F   D S  +  LE++       ++FSG+    D               T+ D      
Sbjct: 114 TFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALN 173

Query: 154 ----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F S+  + A +F TPR V  +   ++       ++ + 
Sbjct: 174 AIDLIHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVT------YQRNA 227

Query: 204 G--MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G   +RT+YDP  G+G  L +   HV D       P ++  HGQEL   T  +    +++
Sbjct: 228 GDNQVRTIYDPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTFNLARMNLML 280

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             +  D       +++ G TLSKD    +   F   + NPP+   W    D  +K   + 
Sbjct: 281 HGVSYD-----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDP 331

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               +G  LP  S     FL+H    L+      G   IVL    LF G   + E +IR+
Sbjct: 332 RFRDYGV-LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFRG---AKEGKIRQ 383

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL ++ I+AI+ LP ++F  T+I T + IL   KT +    V  I+A+  +   +N+ K
Sbjct: 384 KLLLDNRIDAIIGLPANIFHSTSIPTLIMILKKHKTTD---DVLFIDASREFEKDKNQNK 440

Query: 440 K-----RRIINDDQRRQILDIYV 457
                 ++I+   Q RQ +D Y 
Sbjct: 441 LTAVNIQKIVTTYQNRQDVDKYA 463


>gi|325913365|ref|ZP_08175732.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 60-B]
 gi|325477291|gb|EGC80436.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 60-B]
          Length = 502

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 196/487 (40%), Gaps = 88/487 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +    +    F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIES--- 108

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MSNIYEHL 162
                  E   L   + KN++  +L+   + D V                  +   YE+ 
Sbjct: 109 -------ENKTLKDVLPKNYASPDLNKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYC 161

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F  +  +   +F TP  +V    ++L   D+            +YD  CG+GG    
Sbjct: 162 IAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQ 211

Query: 223 AMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           +      H  +CGS       +  +GQE   +T  +    M IR +++D          Q
Sbjct: 212 SAKFIRAHSGNCGS-------ISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQ 258

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGS 335
             T + DL    +  + L+NPPF    W ++K  D V          R+  G P   + +
Sbjct: 259 ADTFTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNAN 308

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             ++ H+ +   L PNG  +  +VL++  L       GE EIR+ ++E+DLIE I++LP 
Sbjct: 309 YAWIQHMIH--HLAPNG--KIGLVLANGAL--SSQSCGEGEIRQKIIEDDLIEGIISLPP 362

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            LF+   I   LW +S  K  +++GK   I+A  +   +    +K R  +++  +++ D 
Sbjct: 363 KLFYSVQIPVTLWFISQNK--KQKGKTVFIDARKMGHMV---DRKHRDFSEEDIQKLADT 417

Query: 456 YVSRENG 462
           + + +NG
Sbjct: 418 FEAFQNG 424


>gi|257080965|ref|ZP_05575326.1| HsdM protein [Enterococcus faecalis E1Sol]
 gi|256988995|gb|EEU76297.1| HsdM protein [Enterococcus faecalis E1Sol]
          Length = 507

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 143/312 (45%), Gaps = 50/312 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +   YE+ + +F S   +G  +F TPR VV L   +L           P   R +YDP 
Sbjct: 150 TLGRTYEYFLGKFASAEGKGGGEFYTPRSVVSLLVEML----------EPYKGR-IYDPC 198

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V       KI  I V +GQE  P T  +C   + IR +      D +
Sbjct: 199 CGSGGMFIQSEKFVEK--HQGKIGDISV-YGQEFNPTTWQLCKMNLAIRGI------DGN 249

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T   DL  G R  Y L+NPPF    W ++K          E  R+  G+P  +
Sbjct: 250 IGTHNADTFQNDLHKGLRADYILANPPFNISDWGQEKLL--------EDSRWKYGIPPKN 301

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   P G   A  VL++  +    +   E EIR+ L++NDL+E IV 
Sbjct: 302 NANYAWIQHMVSKL--APEG--TAGFVLANGSM--STSTKEEFEIRKNLIKNDLVECIVT 355

Query: 393 LPTDLFFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEG----KKRRII 444
           LP+ +F+ T I   LW ++  K ++     +G++  I+A       RNEG    +  +  
Sbjct: 356 LPSQMFYSTQIPVCLWFVTKSKAKKNERNHQGEILFIDA-------RNEGFMADRTTKEF 408

Query: 445 NDDQRRQILDIY 456
           +++  +++ D Y
Sbjct: 409 SEEDIKKVADAY 420


>gi|229015568|ref|ZP_04172563.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1273]
 gi|228745715|gb|EEL95722.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1273]
          Length = 497

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 205/470 (43%), Gaps = 70/470 (14%)

Query: 19  AEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAF------GGSNIDLES 71
           A DL G     +F   IL     R L   +E    S + E  L+F      G    DL+ 
Sbjct: 2   ANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFAEAWGNGEYREDLQE 61

Query: 72  FVKVAGYSFYNTSEYSLST------LGSTNT------RNNLESYIASF-----SDNAKAI 114
           ++ +    +  T +Y  ST      LG+         +N +++  AS       ++ + +
Sbjct: 62  YL-INELGYIITPQYLFSTFVKEIELGANGNFDIEMLQNGVKAIEASTMGADSQEDFENL 120

Query: 115 FEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           F+D D  SS + R  KA   L+ K+  N + I    D V   V+ + YE++I +F +   
Sbjct: 121 FDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMISQFAANAG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   ++              I+ +YD TCG+G  L          G
Sbjct: 181 KKAGEFYTPQQVSRILAKIV--------TAGKTEIKDVYDGTCGSGSLLL-------RVG 225

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K+      +GQE    T+ +    ML+  +   P +    +I+   TL +     KR
Sbjct: 226 KEAKVYNY---YGQEKVSTTYNLARMNMLLHDI---PYQRF--DIKNADTLEEPQHLDKR 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+  KW  D D  + + +     +  P     S     F+ H  + L     
Sbjct: 278 FEAIVANPPYSAKWSAD-DKFQDDERFSNYAKLAPK----SKADFAFVQHFIHHLA---- 328

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+VL    LF G A   E  IR++L+ E + ++A++ LP ++FF T+I T + +L
Sbjct: 329 DNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTSIPTCILVL 385

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             +K  +    V  I+A++ +     +GK +  + D+   +I++ Y+SRE
Sbjct: 386 --KKCRKHDDNVIFIDASNEF----EKGKNQNHLADEHVEKIVNTYLSRE 429


>gi|150398838|ref|YP_001322605.1| type I restriction-modification system, M subunit [Methanococcus
           vannielii SB]
 gi|150011541|gb|ABR53993.1| type I restriction-modification system, M subunit [Methanococcus
           vannielii SB]
          Length = 520

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 218/494 (44%), Gaps = 75/494 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA--------- 54
           A L   IW+ A +L G     DF + +L     R +   L     E  R A         
Sbjct: 9   AELHRTIWQIANNLRGSVDGWDFKQYVLGMLFYRFISENLTNYINEEERKAGNKDFDYSK 68

Query: 55  VREKYLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLS--TLGSTNTR--NNLESYIASFS- 108
           + +K   FG  +  +E  F  +    FYN ++ + +   L  T ++   N+ES    F  
Sbjct: 69  LSDKEAEFGRKDTVIEKGFYILPSELFYNVTKNARNDPNLNETLSKVFKNIESSAKGFES 128

Query: 109 -DNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
            D+ K +F+D D       ST+ +  K   L  + +  + ++L  + +   D    + YE
Sbjct: 129 EDDLKGLFDDLDVNSNKLGSTVEQRNKQ--LVNLLEAINELKLGNYSENTID-AFGDAYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           +L+  + +   +   +F TP++V  L A   ++   D         +  +YDPTCG+G  
Sbjct: 186 YLMTMYAANAGKSGGEFYTPQEVSELLAKITIVGKKD---------VNKVYDPTCGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +               +GQE+   T+ +C   M +  +  +       +I  G
Sbjct: 237 LLKFAKVLGKENVRQGF------YGQEINLTTYNLCRINMFLHDINYNHF-----DIAHG 285

Query: 280 STLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL+    F  + F   +SNPP+  KWE D + +          RF P   L   S   +
Sbjct: 286 NTLTDPKHFDDEPFDAIVSNPPYSIKWEGDSNPILINDP-----RFSPAGVLAPKSKADL 340

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+   L    +  G AAIV     L+ G A   E +IR++L++N+ ++ ++ LP+D
Sbjct: 341 AFTMHMLAWL----STSGTAAIVEFPGVLYRGGA---EQKIRKYLIDNNYVDCVIQLPSD 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IAT + +L   K +    K   I+A+  +    N+ K    ++D+   +ILD +
Sbjct: 394 LFFGTTIATCIIVLKKSKID---NKTLFIDASKEFVRAGNKNK----LSDENINKILDAF 446

Query: 457 VSRENGK-FSRMLD 469
           ++R + + FS+++D
Sbjct: 447 LNRNDIEYFSKLVD 460


>gi|327384000|gb|AEA55475.1| type I restriction modification system protein [Lactobacillus casei
           LC2W]
 gi|327387192|gb|AEA58665.1| type I restriction modification system protein [Lactobacillus casei
           BD-II]
          Length = 538

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 205/503 (40%), Gaps = 86/503 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V  KY  +     +LE  V V      +  EY  +TLG       L  Y          
Sbjct: 61  NVTRKYAQYMDPQFELEG-VSVQP----SLVEYLQNTLGYLIQPQAL--YTTLIGKIQAH 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD---------------TVPDR----- 153
            F   D S  +  LE++       ++FSG+    D               T+ D      
Sbjct: 114 TFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALN 173

Query: 154 ----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F S+  + A +F TPR V  +   ++       ++ + 
Sbjct: 174 AIDLVHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVT------YQRNA 227

Query: 204 G--MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G   +RT+YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++
Sbjct: 228 GDNQVRTIYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLML 280

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             +  D       +++ G TLSKD    +   F   + NPP+   W    D  +K   + 
Sbjct: 281 HGVSYD-----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDP 331

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               +G  LP  S     FL+H    L+      G   IVL    LF G   + E +IR+
Sbjct: 332 RFRDYGV-LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFRG---AKEGKIRQ 383

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL ++ I+AI+ LP ++F  T I T + IL   KT +    V  I+A+  +   +N+ K
Sbjct: 384 KLLMDNRIDAIIGLPANIFHSTGIPTLIMILKKHKTTD---DVLFIDASREFEKDKNQNK 440

Query: 440 K-----RRIINDDQRRQILDIYV 457
                 ++I+   Q RQ +D Y 
Sbjct: 441 LTAANIQKIVTTYQNRQDVDKYA 463


>gi|34557510|ref|NP_907325.1| type I site-specific deoxyribonuclease [Wolinella succinogenes DSM
           1740]
 gi|34483227|emb|CAE10225.1| TYPE I SITE-SPECIFIC DEOXYRIBONUCLEASE [Wolinella succinogenes]
          Length = 520

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 161/355 (45%), Gaps = 44/355 (12%)

Query: 109 DNAKAIFEDFDFSST-IARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D+   +FED D SST + + E+A   L+ K+  +   I          V+ + YE+LI +
Sbjct: 133 DDFVHLFEDLDLSSTKLGKTEEAKNALIAKVLFHLDQINFELKNHDRDVLGDAYEYLIAQ 192

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   + A +F TP+ V  +   ++ +    L        +++YDPTCG+G  L     
Sbjct: 193 FAAGAGKKAGEFYTPQQVSKILAKIVTNGKSKL--------KSVYDPTCGSGSLLLRVAK 244

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V+D  +          +GQEL   T+ +    M++  +          +I+Q  TL   
Sbjct: 245 EVSDVSAF---------YGQELNRTTYNLARMNMIMHDVHYRKF-----DIKQEDTLEHP 290

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F   ++NPPF   W     A      +    ++G   P  S     F+ H+ + 
Sbjct: 291 QHGAMKFEAIVANPPFSAHW----SANPLHMSDDRFSQYGVLAPS-SKADFAFVQHMIHH 345

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIA 404
           L    +  G  AIVL    LF    GS E  IRR+L+EN + ++A++ LP ++F+ T+I 
Sbjct: 346 L----DENGTMAIVLPHGVLFR---GSSEGTIRRYLIENKNYLDAVIGLPANIFYGTSIP 398

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T + +   +K  E    +  I+A++ +   +N+     I+ D+   +I+  Y +R
Sbjct: 399 TSILVF--KKCREDSEHILFIDASNDFEKAKNQN----ILTDEHVEKIITTYKNR 447


>gi|77543208|gb|ABA87020.1| methylation subunit [Vibrio cholerae]
 gi|259156470|gb|ACV96414.1| type I restriction-modification system, M subunit [Vibrio cholerae
           Mex1]
          Length = 524

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 206/503 (40%), Gaps = 76/503 (15%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPT 51
           MT+   SAA     L   IW  A D+ G     DF + +L  TL  R         +   
Sbjct: 1   MTQLQQSAAQQRAELQRQIWAIANDVRGSVDGWDFKQYVLG-TLFYRFISENFVNYITGG 59

Query: 52  RSAVREKYLAFGGSNIDL--ESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIAS 106
             +V    ++    NI    E  +K  GY  Y +   S  + +   + N   +L +  A+
Sbjct: 60  DESVNYAAMSDDDENIKFAKEDAIKTKGYFLYPSQLFSNVAANAHKNENLNTDLAAIFAA 119

Query: 107 FSDNA---------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTV 150
             ++A         K +F DFD +S   RL      K   L  + K  +G+      D  
Sbjct: 120 IENSANGYDSEKDIKGLFADFDTTSN--RLGNTVEAKNKRLTAVLKGVAGLTFGNFEDNQ 177

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D +  + YE LI  + +   +   +F TP+ V  L   L +             +  +Y
Sbjct: 178 ID-LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTSVNKIY 228

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L  A  H       H I       GQEL   T+ +    M +  +  D   
Sbjct: 229 DPAAGSGSLLLQAKKHF----DAHIIEDGFF--GQELNHTTYNLARMNMFLHNINYDKF- 281

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               NIQ G TL++  F   K F   +SNPP+  KW    D            RF P   
Sbjct: 282 ----NIQLGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGV 332

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +
Sbjct: 333 LAPKSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYV 385

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           E +++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N      ++ + 
Sbjct: 386 ETVISLAPNLFFGTTIAVNILVLSKHKTDTT---TQFIDASGLFKKETN----NNVLTEQ 438

Query: 448 QRRQILDIYVSRENGK-FSRMLD 469
               I+ ++ S+EN + F++ +D
Sbjct: 439 HIEDIMKVFASKENVEHFAKCVD 461


>gi|229550755|ref|ZP_04439480.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315866|gb|EEN81839.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
          Length = 540

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 129/503 (25%), Positives = 206/503 (40%), Gaps = 86/503 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------- 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V  KY  +     +LE  V V      +  EY  +TLG       L  Y          
Sbjct: 61  NVTRKYAQYMDPQFELEG-VSVQP----SLVEYLQNTLGYLIQPQAL--YTTLIGKIQAH 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD---------------TVPDR----- 153
            F   D S  +  LE++       ++FSG+    D               T+ D      
Sbjct: 114 TFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALN 173

Query: 154 ----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F S+  + A +F TPR V  +   ++       ++ + 
Sbjct: 174 AIDLVHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVT------YQRNA 227

Query: 204 G--MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G   +RT+YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++
Sbjct: 228 GDNQVRTIYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLML 280

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             +  D       +++ G TLSKD    +   F   + NPP+   W    D  +K   + 
Sbjct: 281 HGVSYD-----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDP 331

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               +G  LP  S     FL+H    L+      G   IVL    LF G   + E +IR+
Sbjct: 332 RFRDYGV-LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFRG---AKEGKIRQ 383

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL ++ I+AI+ LP ++F  T+I T + IL   KT +    V  I+A+  +   +N+ K
Sbjct: 384 KLLLDNRIDAIIGLPANIFHSTSIPTLIMILKKHKTTD---DVLFIDASREFEKDKNQNK 440

Query: 440 K-----RRIINDDQRRQILDIYV 457
                 ++I+   Q RQ +D Y 
Sbjct: 441 LTAANIQKIVTTYQNRQDVDKYA 463


>gi|237731957|ref|ZP_04562438.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907496|gb|EEH93414.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 507

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 174/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H      L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHDSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F++H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFILHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I    K ++   KV LI+A+  + +    GK +  ++ +  +
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKHKVDD---KVLLIDASREYKA----GKNQNQLSAENIQ 427

Query: 451 QILDIYVSREN 461
           +I++ Y   +N
Sbjct: 428 KIVNTYREGDN 438


>gi|288929352|ref|ZP_06423197.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329454|gb|EFC68040.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 517

 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 43/316 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V H+   ++              +R +YDPT
Sbjct: 182 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSHILAEIV--------TLGHARLRNVYDPT 233

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A+ G  ++I       GQE  P T+ +    ML+  ++    R   
Sbjct: 234 CGSGSLLLRA----ANIGHANEI------FGQEKNPTTYNLARMNMLLHGIKFSNFR--- 280

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W     A EK + +    + G   P+ + 
Sbjct: 281 --IENGDTLEADAFGDTQFDAVVANPPFSAEW----SAAEKFNNDDRFSKIGRLAPRKT- 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
               F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ 
Sbjct: 334 ADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T + +    + E+    +  I+A+  +  ++ + K R        ++I
Sbjct: 387 LPANIFYGTSIPTCILVFKKCRKEDEN--ILFIDASKEFEKVKTQNKLR----PQHIQKI 440

Query: 453 LDIYVSR-ENGKFSRM 467
           +D Y  R E  K+S +
Sbjct: 441 VDTYRDRKEIEKYSHL 456


>gi|251811429|ref|ZP_04825902.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805058|gb|EES57715.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 504

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 131/282 (46%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++           P   R +YDP 
Sbjct: 147 VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI----------EPYKGR-IYDPC 195

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR +++D      
Sbjct: 196 CGSGGMFVQSERFVE---KHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGE--- 249

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   DL  G +  Y L+NPPF    W +++   +         R+  G+P   
Sbjct: 250 ---RNADTFHNDLHKGLKADYILANPPFNASDWGQEQLLDDY--------RWQFGIPPKG 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   PNG   A  VL++  +    +G  E EIR+ L+E DL+E IV 
Sbjct: 299 NANYAWIEHMISKL--APNG--TAGFVLANGSM--STSGKDELEIRKNLIEQDLVECIVT 352

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  LF+ T I   LW +SN K +    ERR ++  I+A ++
Sbjct: 353 LPGQLFYSTQIPVCLWFISNNKGQNGKKERRNEILFIDAREI 394


>gi|300865423|ref|ZP_07110226.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
 gi|300336582|emb|CBN55376.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
          Length = 540

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 179/385 (46%), Gaps = 48/385 (12%)

Query: 87  SLSTLGS-TNTRNNLE-SYIASFSD-NAKAIFEDFDFSST-IARLEKA--GLLYKICKNF 140
           S+  LG  T+  NN+E S +   S+ +   +FED D +ST + R  KA   L+ KI  + 
Sbjct: 128 SIFILGDLTDVLNNIERSTMGKESEEDFDHLFEDLDLNSTKLGRTPKAKNALIAKILVHL 187

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             I+         V+ + YE+LI +F S   + A +F TP+ V  +   ++    + L  
Sbjct: 188 DKIDFRLGDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTTGKERL-- 245

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                 +++YDPTCG+G  L      V   G           +GQE+   T+ +    M+
Sbjct: 246 ------KSVYDPTCGSGSLLLRVAREVESVGDF---------YGQEMNRTTYNLARMNMI 290

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +     R+   +++Q  TL      G RF   ++NPPF  +W  +K   E + +  +
Sbjct: 291 LHGVH---YRNF--DLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANK-LFESDDRFSQ 344

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            G+  P    +S     F+ H+ + L    +  G  A+VL    LF G A   E  IR++
Sbjct: 345 YGKLAP----VSKADFAFVQHMLHHL----DENGIMAVVLPHGVLFRGGA---EGHIRQY 393

Query: 381 LL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+ E + ++A++ LP ++F+ T+I T + +L  +K  E    V  I+A+  +    N+  
Sbjct: 394 LIKERNWLDAVIGLPANIFYGTSIPTCILVL--KKCRESPEDVLFIDASAYFEKATNQNL 451

Query: 440 KR-----RIINDDQRRQILDIYVSR 459
            R     +II+  ++R   D Y  R
Sbjct: 452 LRAQDVDKIISTYRQRIEEDKYSYR 476


>gi|228984123|ref|ZP_04144309.1| Type I restriction-modification system, M subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228775651|gb|EEM24031.1| Type I restriction-modification system, M subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 530

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 153/312 (49%), Gaps = 43/312 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP++V  +   +      A   +    + +++DPT
Sbjct: 172 VIGDAYEFLIGQFASEAGKKAGEFYTPQEVSDMMACI------AAIGQEDKKLFSVFDPT 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++    SH   P  +  HGQEL   T+ +    +++  ++ +  R   
Sbjct: 226 MGSGSLMLNIRKYI----SH---PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR--- 275

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 276 --LRNGDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGKLAPK- 328

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++
Sbjct: 329 SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVI 381

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIINDDQR 449
            +P++LFF T+I T + IL  NR T +    V  I+A++ +   +N+ K   + IN    
Sbjct: 382 GMPSNLFFGTSIPTTVIILKKNRTTRD----VLFIDASNEFDKGKNQNKLSPKYIN---- 433

Query: 450 RQILDIYVSREN 461
            +I++ Y  REN
Sbjct: 434 -KIVETYKKREN 444


>gi|242372574|ref|ZP_04818148.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
 gi|242349791|gb|EES41392.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
          Length = 518

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 203/477 (42%), Gaps = 67/477 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAF--GGS 65
           A L   +W  A DL G+    +F   IL     R L E   E +   + E  +++    +
Sbjct: 12  AELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEESSAKLLSEDNISYQEAMN 71

Query: 66  NIDLESFVK---VAGYSFYNTSEYSLSTLGS------------TNTRNNLESYIASFS-- 108
           N D    V+   +    F    E   S L +            +N   N+E+        
Sbjct: 72  NDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFEIEDLSNAIKNVENSTRGHESE 131

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIR 164
           D+   +F+D D +S+        +  L+ K+  N S +  +H D   D ++ + YE+LI 
Sbjct: 132 DDFIHLFDDMDLNSSRLGNTNAARTKLIAKVMMNISTLPFVHSDLEID-MLGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G  L    
Sbjct: 191 QFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGSLLL--- 239

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G   K+      +GQE    T+ +    ML+  +     +     I+ G TL  
Sbjct: 240 ----RVGRESKVRNY---YGQEYNSTTYNLARMNMLLHDVNFKAFQ-----IENGDTLED 287

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               G++F   ++NPP+   W  +   ++ E        +G   PK S     F+ H+  
Sbjct: 288 PAHKGEQFDAVVANPPYSANWSAESSFLDDER----FSDYGKLAPK-SKADFAFIQHMIY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I
Sbjct: 343 HLD----DEGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGTSI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            T + +   +K  +    V  I+A+  +     +GK +  + D+   +I+D Y  RE
Sbjct: 396 PTCVLVF--KKCRQADDDVVFIDASQSF----EKGKNQNHLTDEDVDKIVDTYSQRE 446


>gi|170731320|ref|YP_001776753.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
 gi|167966113|gb|ACA13123.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
          Length = 527

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 213/499 (42%), Gaps = 79/499 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---------Y 59
           A L   IW+ A DL G     DF   +L     R +   L    +A   +         Y
Sbjct: 10  AELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRTGTEKDDFDY 69

Query: 60  LAFGGSNIDL----------------ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLES 102
             F  +  +L                E FV+V AG  F +    +LS + +   R    S
Sbjct: 70  AQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIER----S 125

Query: 103 YIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------R 153
            I S S+ + K +F+D D +S+      A    K+ K    I   P T  +         
Sbjct: 126 AIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGGFTENTID 185

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L++ + S   +   +F TP++V  L T + +             +  +YDP 
Sbjct: 186 LFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITV--------VGKTEVNKVYDPA 237

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L   +N V   G H K+      +GQE+   T+ +C   M +  +  +      
Sbjct: 238 CGSGSLL---LNFVKVLG-HDKVRQGF--YGQEINLTTYNLCRINMFLHNVNYEKF---- 287

Query: 274 KNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL+    +  + F   +SNPP+  KW+ D +A+          RF P   L  
Sbjct: 288 -HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLINDP-----RFAPAGILAP 341

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A+
Sbjct: 342 KSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAV 394

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   K +        ++A+ L+      G K ++    Q++
Sbjct: 395 IQLPADLFFGTTIATCIIVLKKSKGDN---ATLFMDASSLFV---RSGTKNKLSTAHQKK 448

Query: 451 QILDIYVSRENGKFSRMLD 469
            +  + V ++   F+R++D
Sbjct: 449 ILDGLTVRQDIEHFARLVD 467


>gi|319954804|ref|YP_004166071.1| type i restriction-modification system, m subunit [Cellulophaga
           algicola DSM 14237]
 gi|319423464|gb|ADV50573.1| type I restriction-modification system, M subunit [Cellulophaga
           algicola DSM 14237]
          Length = 905

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 151/331 (45%), Gaps = 56/331 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL----LDPDDALFKESPGMIR 207
           D ++ + YE L+R F ++  +    F TP +V     +++    +D +  +         
Sbjct: 135 DDILGDAYEFLMRHFATQSGKSKGQFYTPSEVSRTMASIIGINNVDTNSDI--------- 185

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+YDPTCG+G  L          G+  K    L  +GQE +  T  +    M+   L  +
Sbjct: 186 TVYDPTCGSGSLLLK-------VGTEAKSKVTL--YGQEKDATTAGLARMNMI---LHDN 233

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-------KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNG 319
           P    +  I+QG+TLSK LF         K F + ++NPPF  K+W       + ++   
Sbjct: 234 P----TAEIKQGNTLSKPLFEDPKLEANLKTFDFVVANPPFSDKRWSNGLTLPDDKY--- 286

Query: 320 ELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
              RF   G+P   +G   FL+H+   L+      G+ AI+L    LF G A   ESEIR
Sbjct: 287 --NRFADYGIPPSKNGDYAFLLHIVRSLK----RNGKGAIILPHGVLFRGNA---ESEIR 337

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             L++   I+ I+ LP +LF+ T I   +  +       R+G    I   D       +G
Sbjct: 338 TNLIKKGFIKGIIGLPANLFYGTGIPAAIIFIDKENAANRKG----IFMIDAGKGFIKDG 393

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRML 468
            K R+   D RR I D++ +++  K FSRM+
Sbjct: 394 NKNRLREQDIRR-ITDVFAAQKEVKGFSRMV 423


>gi|126453526|ref|YP_001064382.1| type I restriction-modification system M subunit [Burkholderia
           pseudomallei 1106a]
 gi|242316390|ref|ZP_04815406.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106b]
 gi|126227168|gb|ABN90708.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106a]
 gi|242139629|gb|EES26031.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106b]
          Length = 822

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 186/448 (41%), Gaps = 59/448 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L   ++K A+ L G    ++F + I     L+R     +  R  V    LA G S  +
Sbjct: 6   SQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSEFE 65

Query: 69  LESFVKVA---GYSFY----NTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFEDF 118
            ++   +    G SFY    +  EY L      +    L   +    +N  +   + E  
Sbjct: 66  AQTSADLKRWYGESFYVPPRSRWEY-LMNEAHNDVGGFLNRALGGLENNNSSLSEVLEHI 124

Query: 119 DFSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           DFS  + + +   + L ++  +FS   L  +    PD ++   YE+LIR F     +   
Sbjct: 125 DFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPD-LLGAAYEYLIREFADSAGKKGG 183

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV +   LL           P    ++YDP  G+GG L  +  ++ + G    
Sbjct: 184 EFYTPRSVVRMMVRLL----------KPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGS 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLS----KNIQQGSTLSKDLFTGK 290
              +   +GQE      ++    ML+  + + D R D +    ++++ G  +        
Sbjct: 234 RAEL---YGQEANGTVWSIAKMNMLLHGIATADLRNDDTLSEPQHVEGGELM-------- 282

Query: 291 RFHYCLSNPPFGKKW-----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           RF   LSNPPF   W     ++    V       E  ++G          ++FL H+   
Sbjct: 283 RFDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFKYGEVALGSKKADLMFLQHMVAV 342

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L      GG+ A V+    LF G     E  IR+ ++E DL+EA++ LP +LF+ T I  
Sbjct: 343 L----RDGGQLATVMPHGVLFRG---GEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPA 395

Query: 406 YLWILSNR------KTEERRGKVQLINA 427
            + +L  R      K   R+GKV  INA
Sbjct: 396 CILVLRQRLGNATGKPVGRQGKVLFINA 423


>gi|161528114|ref|YP_001581940.1| type I restriction-modification system subunit M [Nitrosopumilus
           maritimus SCM1]
 gi|160339415|gb|ABX12502.1| type I restriction-modification system, M subunit [Nitrosopumilus
           maritimus SCM1]
          Length = 523

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 144/332 (43%), Gaps = 55/332 (16%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           + D   + +  + YE L+  F SE  +    F TPR VV L   L+           P  
Sbjct: 152 NSDLENEDIFGDAYEQLLEMFASETKKKGGQFYTPRKVVQLLVELM----------EPKY 201

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVA 257
              + DPTCG+GG L  +  +V       K        +   L  HGQ+   +T  +C  
Sbjct: 202 DYRINDPTCGSGGMLIHSRQYVEKSLKKEKKSSKEIEELLKNLTLHGQDSNIDTVNMCKM 261

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHY--CLSNPPFGKKWEKDKDAVE 313
            M+I  + S        +I+ G  L    F   GK   Y   L+N PF + WE    A  
Sbjct: 262 NMVIHGVPS-------FSIEWGDVLESPKFVKDGKLIEYDRVLANFPFSENWE----ASG 310

Query: 314 KEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           KE  N   GRF  G+ P        F++H+ + L    N  G+AAIV S   LF G   S
Sbjct: 311 KE--NDGYGRFKYGIAPAKDKADFAFILHMLSSL----NENGKAAIVCSQGVLFRG---S 361

Query: 373 GESEIRRWL--------LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
            E +IR  +        L+ D+IEAI+ALP  LF+ T I   + IL+  K +ER+ K+  
Sbjct: 362 SEQKIRENMIAGNKDENLQGDMIEAIIALPVALFYGTGIPACVLILNKNKPKERKNKILF 421

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           I A + +     EGK R  + D     I+  +
Sbjct: 422 IYAANEF----QEGKVRNKLRDKDIEHIVKAF 449


>gi|86750172|ref|YP_486668.1| type I restriction-modification system, M subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86573200|gb|ABD07757.1| type I restriction-modification system, M subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 515

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 202/482 (41%), Gaps = 70/482 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSN 66
           A+L   IW  A D+ G     DF + +L     R +         A  E   Y A     
Sbjct: 8   AALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEADDESIDYAALSDDV 67

Query: 67  I--DL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDN 110
           I  D+ +  +K  GY  Y  S+  ++   + N  ++L + +A                 +
Sbjct: 68  ITDDIKDDAIKTKGYFIY-PSQLFVNVAKNANINHSLNTDLAHIFAAIESSANGYPSEQD 126

Query: 111 AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHL 162
            + +F DFD +ST  RL     EK   L K+ K  + ++    H   +   +  + YE L
Sbjct: 127 IRGLFADFDTTST--RLGHTVSEKNSRLAKVLKRVAELDFGDFHNSQID--LFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +             +  +YDP CG+G  L  
Sbjct: 183 ISNYAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTQVNKIYDPACGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H       H I       GQE+   T+ +    M +  +  D       NIQ+G TL
Sbjct: 235 AKKHF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----NIQRGDTL 283

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
           ++  F   K F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 284 TQPHFQDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      +  R G+ E +IR++L++N+ +E ++AL ++LF+
Sbjct: 339 LHALSYL----SAKGRAAIVCFPGIFY--RDGA-EKKIRQYLVDNNYVETVIALASNLFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +L+  KT+     +Q I+A+        +     ++ DD   ++++I+  +
Sbjct: 392 GTTIAVTILVLAKNKTDT---AIQFIDAS--GEEFFKKATNTNLMTDDHIARVMEIFDRK 446

Query: 460 EN 461
           E+
Sbjct: 447 ED 448


>gi|229088748|ref|ZP_04220305.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-44]
 gi|228694573|gb|EEL47992.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-44]
          Length = 512

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 155/313 (49%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           V+ + YE LI +F SE  + A +F TP +V  +    A +   D  LF        +++D
Sbjct: 154 VIGDAYEFLISQFASEAGKKAGEFYTPHEVSDMMARIAAIGQEDKKLF--------SVFD 205

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  +++     +H  P  +  HGQEL   T+ +    +++  ++ +  R 
Sbjct: 206 PTMGSGSLMLNIRSYI-----NH--PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR- 257

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   P
Sbjct: 258 ----LRNGDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGKLAP 309

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A
Sbjct: 310 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDA 361

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LFF T+I T + IL  NR T +    V  I+A++ +T  +N+ K    ++ + 
Sbjct: 362 VIGMPANLFFGTSIPTTVIILKKNRTTRD----VLFIDASNEFTKGKNQNK----LSKEN 413

Query: 449 RRQILDIYVSREN 461
             +I++ Y +RE+
Sbjct: 414 IDKIVETYKNRED 426


>gi|165975742|ref|YP_001651335.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|307262879|ref|ZP_07544503.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165875843|gb|ABY68891.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|306871784|gb|EFN03504.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 537

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 202/480 (42%), Gaps = 71/480 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 28  AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYATWSDD 86

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFS--D 109
             NI L  E  +K  GY  Y +  +      + N  N          ++ES    +   +
Sbjct: 87  DENIKLGKEHVIKEKGYFIYPSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYDSEN 146

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
           + K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE L
Sbjct: 147 DIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEFL 203

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 204 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 255

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D    H I       GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 256 AKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDTL 304

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 305 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 359

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 360 LHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 413 GTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 465


>gi|303249554|ref|ZP_07335761.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302651628|gb|EFL81777.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 516

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 202/480 (42%), Gaps = 71/480 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYATWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFS--D 109
             NI L  E  +K  GY  Y +  +      + N  N          ++ES    +   +
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYDSEN 126

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
           + K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE L
Sbjct: 127 DIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D    H I       GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 236 AKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDTL 284

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 445


>gi|325110947|ref|YP_004272015.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
 gi|324971215|gb|ADY61993.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
          Length = 560

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 192/467 (41%), Gaps = 81/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T S  S A+ +WK A+ L G     ++  V+L    L+ +  + +  R  +  +  
Sbjct: 1   MNDQTASDLSYADTLWKAADALRGQVDAAEYKHVVLGLLFLKYISDSFQSRRDELEAELT 60

Query: 61  AFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
           + G     LE+ ++      A   F+   E   + L    TR +    IA+  D+A    
Sbjct: 61  SDGIKGEQLENLLESRDEYTAERVFWVPPESRWTNLQDQATRPD----IATLIDDAILAV 116

Query: 116 E--DFDFSSTIAR---------LEKAGLLYKICK-NFSGI-ELHPDTVPDRVMSNIYEHL 162
           E  + +  S + R         ++  GL+  I    F+G  E   DT     +  +YE+ 
Sbjct: 117 ERDNPNLKSKLPRDYARRGIEPVKLKGLIDLIADIGFNGTREKARDT-----LGRVYEYF 171

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F +   +   +F TPR +V +   +L           P   R +YDP CG+GG    
Sbjct: 172 LGKFAAAEGKLGGEFYTPRSIVRVLVEML----------EPYQGR-IYDPACGSGGMFVQ 220

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +   V   G +     +    GQE  P T  +    + I  +E++         Q   T 
Sbjct: 221 SEKFVEAHGGNRTDVSVF---GQESNPTTWRLAHMNLAIHGIEAN------LGPQPADTF 271

Query: 283 SKDLFTGKRFHYCLSNPPF------GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            K    G +  + L+NPPF      G+    DK             RF  G P + + + 
Sbjct: 272 LKPQHPGLQADFVLANPPFNVSDYSGQLLRGDK-------------RFSFGDPPVGNANY 318

Query: 337 LFLMHLANKLELP-PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            ++ H  + L  P   GGG A  V+++  L +   G G+  IRR ++E DL++ IVA+P 
Sbjct: 319 AWIQHFIHHLAFPNGQGGGVAGFVMANGSLSSNTGGEGD--IRRKIVEADLVDCIVAMPA 376

Query: 396 DLFFRTNIATYLWILSNRKT------------EERRGKVQLINATDL 430
            LFF T I   LW L+  KT            E R+G+   I+A  L
Sbjct: 377 QLFFTTGIPVCLWFLTRDKTGKNIRKGTPNRPEGRQGETLFIDARKL 423


>gi|21674693|ref|NP_662758.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
 gi|21647900|gb|AAM73100.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
          Length = 518

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 200/483 (41%), Gaps = 76/483 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E     +R  Y     
Sbjct: 8   AELQRRIWQIANDVRGTVDGWDFKQYVLGALFYRFISENFAAHMEAGDDGIR--YAELPD 65

Query: 65  SNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
           S I  E     +K  GY  Y +  ++ + +   NT ++L + +A+               
Sbjct: 66  SVITPELKDDAIKTKGYFIYPSQLFA-NVVARANTNDSLNTDLAAIFTAIESSANGYPSE 124

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
            + K +F DFD +S   RL     +K   L  + K  + ++  P D     +  + YE L
Sbjct: 125 QDIKGLFADFDTTSN--RLGNTVKDKNQRLAAVLKGVAELDFGPFDDAHIDLFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L L    ++ K        +YDP CG+G  L  
Sbjct: 183 ISNYAANAGKSGGEFFTPQHVSRLIARLALHGQKSVNK--------IYDPACGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     +              GQE    T+ +    M +  +  D       NIQ G+TL
Sbjct: 235 AKKPFDERLIEDGF------FGQESNHTTYNLARMNMFLHNINYD-----KFNIQLGNTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
            +  F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     
Sbjct: 284 LEPHFADEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E++IR++L++N+ +E ++AL  +L
Sbjct: 337 FVLHALHYL----SAKGRAAIVCFPGIFYRGGA---EAKIRQYLVDNNYVETVIALAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T IA  + +LS  K +      Q I+A+ L+    N      ++ D+   QI+ ++ 
Sbjct: 390 FFGTTIAVNILVLSKHKPDT---TTQFIDASALFKKETN----NNVLLDEHIEQIMAVFA 442

Query: 458 SRE 460
           S+E
Sbjct: 443 SKE 445


>gi|307251819|ref|ZP_07533721.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860726|gb|EFM92737.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 536

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 202/480 (42%), Gaps = 71/480 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 28  AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYATWSDD 86

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFS--D 109
             NI L  E  +K  GY  Y +  +      + N  N          ++ES    +   +
Sbjct: 87  DENIKLGKEHVIKEKGYFIYPSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYDSEN 146

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
           + K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE L
Sbjct: 147 DIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEFL 203

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 204 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 255

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D    H I       GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 256 AKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDTL 304

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 305 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 359

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 360 LHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 413 GTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 465


>gi|315636819|ref|ZP_07892044.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315478873|gb|EFU69581.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 811

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 201/455 (44%), Gaps = 54/455 (11%)

Query: 109 DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIR 164
           ++ K I +  DF+ +    +  +    L K+ K F  + L  +T   D ++ + YE+L+R
Sbjct: 87  NDLKGIIDTADFNDSTKLGSGKQMVDTLSKLIKIFDNLNLGSNTAEGDDLLGDAYEYLMR 146

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F +E  +    F TP +V   +T L   P      E+    +T+YDPTCG+G  L  A 
Sbjct: 147 HFATESGKSKGQFYTPSEV---STIL---PQIIGIDENTTAKQTIYDPTCGSGSLLLKAS 200

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           +           P  L  +GQE E  T A+C   M+   L ++    ++   Q  STL+ 
Sbjct: 201 SLA---------PNGLSIYGQEKEVSTTALCKMNMI---LHNNAEAVIAPGGQ--STLAN 246

Query: 285 DLFTGK------RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
             F  +       F + ++NPPF  K W    + VE   K     RF G   P   +G  
Sbjct: 247 PFFEDEPDVKLTTFDFVVANPPFSLKAW---TNGVESPDK---YSRFEGFVTPPEKNGDY 300

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H+   ++      G+ A++L    LF G A   E  IR  L+    I+ I+ LP +
Sbjct: 301 AFLLHICKSIK----SNGKGAVILPHGVLFRGNA---EGVIREKLIRKGWIKGIIGLPAN 353

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I   + +L   K + R G + +I+A+      + +G K R+ + D  + +    
Sbjct: 354 LFYGTGIPACIIVLDKEKAQNRSG-IFMIDAS---KGFKKDGNKNRLRSQDVHKIVDTFN 409

Query: 457 VSRENGKFSRMLDYRTFGYRR--IKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQS 513
            + E  K+S+M+  R        + + R +  S   D   L A L   I    +  L + 
Sbjct: 410 KTLEIEKYSKMVTLRDIELNEYNLNIPRYIDSSENEDIQDLYAHLNGGIPNVDIENLKE- 468

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           +W D+ K +  +++     + +    I+SNE K+ 
Sbjct: 469 YW-DVFKTLKSELFAPNIKDGYSNAKIESNEIKSF 502


>gi|168207083|ref|ZP_02633088.1| type I restriction-modification system, M subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661530|gb|EDT14213.1| type I restriction-modification system, M subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 514

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 204/479 (42%), Gaps = 69/479 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFGGSNI 67
           ++L + +W  A DL G+    +F   IL     R L   +E      + E  + +  +  
Sbjct: 12  SNLQSNLWNIANDLRGNMDANEFKNYILGLIFYRYLSENVESRANRLLEEDNMTYAEAWE 71

Query: 68  D-------LESFVKVAGY------------SFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           D        E  V   GY            S   T ++ +  L      N  ES +   S
Sbjct: 72  DEELREALQEELVNDIGYYIEPKFLYHNLLSKIETGDFDIEMLEEA-INNITESTLGEDS 130

Query: 109 DNA-KAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +     +F+D D  ST    +   ++ L+ K+    + I+         ++ + YE+LI 
Sbjct: 131 EEEFDHLFDDMDLKSTKLGKDVKSRSDLIAKVMGKIAQIDFSFSNSEIDILGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           +F +   + A +F TP+ V   LA  + +   D         ++ +YDPTCG+G  L   
Sbjct: 191 QFAANAGKKAGEFYTPQQVSKILAKIVTMGKTD---------LKNVYDPTCGSGSLLLRV 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                      +   +   +GQEL   T+ +    ML+  +     R    +I+   TL 
Sbjct: 242 ----------SREANVRTFYGQELTSTTYNLARMNMLLHGV-----RYSDFDIKNDDTLE 286

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  RF   ++NPP+  KW  D+  ++ E        +G   PK S     F+ H+ 
Sbjct: 287 NPQHIDLRFEAVVANPPYSAKWSGDEKFLDDER----FSAYGKLAPK-SKADFAFVQHMI 341

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402
           ++L+      G  A+VL    LF G A   E  IR++L+E  ++++A++ LP ++FF T+
Sbjct: 342 HQLD----NNGTMAVVLPHGVLFRGAA---EGVIRKYLIEKRNVLDAVIGLPANIFFGTS 394

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           I T + +   +K  +    +  I+A++ +     +GK + ++ D    +I++ Y +REN
Sbjct: 395 IPTVILVF--KKNRKNTDNIMFIDASNEFE----KGKNQNLLRDSDVDKIIETYKNREN 447


>gi|237756252|ref|ZP_04584812.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691589|gb|EEP60637.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 507

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 201/464 (43%), Gaps = 52/464 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYLAF 62
            +L N++W+ A  + G  +   +   ILP   L+RL    +   S +      RE+ L  
Sbjct: 6   GTLENWLWEAASAIRGAVEANKYKDYILPLIFLKRLSDVFDDEISRLESEFGSRERALKI 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
              +  +  F       + N    S+  +G   T    E  +A  +   + +    DF++
Sbjct: 66  VEMDHSIVRFYIPEKARWKNIKAQSVR-IGEYLTDAVRE--VAKENPKLEGVINIVDFNA 122

Query: 123 TIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +++  R+     L ++    S   L  + V   ++   YE+L+R+F     + A +F TP
Sbjct: 123 SVSGQRIIDDDRLKELINILSRHRLGLNDVEPDILGRAYEYLLRKFAEGSGQSAGEFYTP 182

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           ++V  +  A +LDP +            +YDP CG+GG L        +     K    L
Sbjct: 183 KEV-GILMAKILDPKEG---------DEVYDPCCGSGGLLIKCYLRFKEKYQDKKDAIPL 232

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYC 295
              GQE+   T+A+      I  +E+         I  G ++    F     + K+F   
Sbjct: 233 RFFGQEINHTTYAMAKMNAFIHDMEN-------TEIALGDSMRNPAFKESDGSLKKFDVI 285

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +NP + + +       E+ +KN    RF  G+P  S     ++ H+   L       G+
Sbjct: 286 TANPMWNQNFS------EEVYKNDPYKRFEFGIPPSSSADWGWIQHMYASLR----ENGK 335

Query: 356 AAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            A+VL +  +  G    G   E +IR+  ++NDLIEA++ LP +LF+ T     + +++ 
Sbjct: 336 IAVVLDTGSVSRGSGNVGSNKERDIRKKFVDNDLIEAVILLPENLFYNTTAPGVIIVIN- 394

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            K +E + ++ LINA+ L+   R + +    + D+  RQ+ +IY
Sbjct: 395 -KNKEHKDQILLINASSLYEKERPKNR----LTDEGIRQVYEIY 433


>gi|104774034|ref|YP_619014.1| Type I restriction-modification system, modification subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423115|emb|CAI97854.1| Type I restriction-modification system, modification subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 532

 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 174/367 (47%), Gaps = 48/367 (13%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIAR--LEKAGLLYKICK 138
           N   + L+ L    T+  LES   SF    + +FEDFD +S  + +   ++   +  + K
Sbjct: 104 NNGSFQLNQLKDAFTQ--LESQGNSF----EGLFEDFDLYSRQLGQNLQKQTDTIVGVIK 157

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
               +EL     P   + + YE+LI +F SE  + A +F TP++V  L   L L   D  
Sbjct: 158 AIGKLELV--NTPGDTLGDAYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKDY- 214

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
              S GM  T+YDP  G+G  L +   +V +          +  +GQE+   T  +    
Sbjct: 215 ---SNGM--TVYDPAMGSGSLLLNFKKYVPNSSR-------ITYYGQEINTSTFNLARMN 262

Query: 259 MLIRRLESDPRRDLS-KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++ R+      DL+ + ++ G TL +D    +   F   + NPP+ +KW+ DK  ++  
Sbjct: 263 MILHRV------DLANQKLRNGDTLDEDWPAEEITNFDSVVMNPPYSQKWKADKGFLD-- 314

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +    ++G  LP  S     FL+H    L+      G  AIVL    LF G A   E 
Sbjct: 315 --DPRFSKYGV-LPPKSKADYAFLLHGFYHLK----HSGAMAIVLPHGILFRGAA---EG 364

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ LLE   I+A++ LP +LF  T+I T + +L   K +++   V  I+A+  +  ++
Sbjct: 365 KIRQKLLEEGAIDAVIGLPANLFHSTSIPTTIVVL---KKDKQDRSVLFIDASKEFEKVK 421

Query: 436 NEGKKRR 442
            + K R+
Sbjct: 422 TQNKLRQ 428


>gi|297581881|ref|ZP_06943802.1| type I restriction enzyme M protein [Vibrio cholerae RC385]
 gi|297533975|gb|EFH72815.1| type I restriction enzyme M protein [Vibrio cholerae RC385]
          Length = 832

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 51/329 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLY 210
           D ++ + YE+L+R F S+  +    F TP +V   +A  + + P +A+         T Y
Sbjct: 140 DDILGDAYEYLMRHFASQSGKSKGQFYTPSEVSRIMAKVVGISPANAVAS------TTAY 193

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L   +   A+ G H      +   GQE++  T  +    M++    +    
Sbjct: 194 DPTCGSGSLL---LKVAAEAGKH------ITLEGQEMDVTTAGLARMNMILHDFPT---- 240

Query: 271 DLSKNIQQGSTLSKDLFTGKR---------FHYCLSNPPFG-KKWEKDKDAVEKEHKNGE 320
               NI QG+TL+   F   R         + Y ++NPPF  K W          H+   
Sbjct: 241 ---ANILQGNTLASPKFKDGRKDGTEVLRTYDYVVANPPFSDKTWSTGLTPASDAHQ--- 294

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             RF  G P    G   +L+H+   ++      G+ A +L    LF G A   E+ IR  
Sbjct: 295 --RFAWGEPPKKQGDYAYLLHIIRSMK----STGKGACILPHGVLFRGNA---EAVIREK 345

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+ + +++ I+ LP++LF+ TNIA  + +L       R+G + +I+A+        +G K
Sbjct: 346 LVRSGILKGIIGLPSNLFYGTNIAACILVLDKENASARKG-IFMIDAS---KGFIKDGAK 401

Query: 441 RRIINDDQRRQILDIYVS-RENGKFSRML 468
            R+   D  + I+D +    E  ++SRM+
Sbjct: 402 NRLREQDIHK-IVDAFTKLAELPRYSRMV 429


>gi|114319660|ref|YP_741343.1| type I restriction-modification system, M subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226054|gb|ABI55853.1| type I restriction-modification system, M subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 808

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 175/432 (40%), Gaps = 45/432 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    ++F + I     L+R     +  R  VR    A G S  ++
Sbjct: 7   QLERHLFKAADILRGRMDASEFKEYIFGMLFLKRCSDVFDQRREEVRGSLQASGKSEAEI 66

Query: 70  ESFVKVAGY---SFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              +++  +    F+   +     L      G  +  N   + +   +     + E  DF
Sbjct: 67  AQLIEMPHWYKADFFVPPQSRWDHLLNEAHQGVGSALNKALAGLEEHNHGLAGVLEHIDF 126

Query: 121 SSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           +  +         L  +  +FS   L  +    PD ++   YE+LIR F     +   +F
Sbjct: 127 TRKVGSTTLPDRKLRDLIAHFSEYRLRNEDFEFPD-LLGAAYEYLIRDFADSAGKKGGEF 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR VV +   L+ DP +            +YDP  G+GG L  A  ++ + G     P
Sbjct: 186 YTPRPVVRMMVRLM-DPQEG---------HRVYDPCMGSGGMLIMAKEYLEEHGGD---P 232

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            +L   GQE      A+    ML+  + S   R+             +L   KRF   L+
Sbjct: 233 RLLNLFGQEASGSVWAIAKMNMLLHGISSADLRNEDTLTDPQHVEGGEL---KRFDRILT 289

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF   +   +   E+        R+G          ++FL H+   L    N  GR A
Sbjct: 290 NPPFSIGYTPSQHFPER-------FRYGSVPEGAKKADLMFLQHMVACL----NANGRLA 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--KT 415
            V+    LF G     E  IR  LLE+DL+EA++ L  +LF+ T I   + +L  +  K 
Sbjct: 339 TVMPHGVLFRG---GDEKRIRAGLLEDDLVEAVIGLAPNLFYGTGIPASILVLRAKGAKP 395

Query: 416 EERRGKVQLINA 427
            ER+GKV  INA
Sbjct: 396 AERQGKVLFINA 407


>gi|229089986|ref|ZP_04221238.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-42]
 gi|228693333|gb|EEL47042.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-42]
          Length = 530

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP +V  +   +      A+ +ES  +  +++DPT
Sbjct: 172 VIGDAYEFLIGQFASEAGKKAGEFYTPHEVSDMMARIA-----AIGQESKKLF-SVFDPT 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T+ +    +++  ++ +  R   
Sbjct: 226 MGSGSLMLNIRNYI-------NFPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR--- 275

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             ++   TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 276 --LRNADTLNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLD----DSRFNRYGKLAPK- 328

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++
Sbjct: 329 SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVI 381

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +P +LFF T+I T + IL  NR T +    V  I+A++ +T  +N+ K    ++ +   
Sbjct: 382 GMPANLFFGTSIPTTVIILKKNRTTRD----VLFIDASNEFTKGKNQNK----LSKENID 433

Query: 451 QILDIYVSREN 461
           +I++ Y  RE+
Sbjct: 434 KIVETYKKRED 444


>gi|28199936|ref|NP_780250.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182682691|ref|YP_001830851.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa M23]
 gi|28058067|gb|AAO29899.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182632801|gb|ACB93577.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa M23]
 gi|307578974|gb|ADN62943.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 527

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 214/503 (42%), Gaps = 87/503 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW+ A DL G     DF   +L     R +    E   S +  +    G  N+D
Sbjct: 10  AELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFIS---ENLTSYINAQEPRTGNGNVD 66

Query: 69  L----------------------------ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNN 99
                                        E FV+V AG  F +    +LS + +   R  
Sbjct: 67  FDYAQLSDAGAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIER-- 124

Query: 100 LESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------ 152
             S I S S+ + K +F+D D +S+           K+ K    I   P T  +      
Sbjct: 125 --SAIGSDSEQDIKGLFDDLDVNSSKLGPTVPKRNEKLVKLLEAIGDLPLTSSEGGFTEN 182

Query: 153 --RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  + YE+L++ + S   +   +F TP++V  L T + +             +  +Y
Sbjct: 183 TIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITV--------VGKTEVNKVY 234

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L   +N V   G H K+      +GQE+   T+ +C   M +  +  +   
Sbjct: 235 DPACGSGSLL---LNFVKVLG-HDKVRQGF--YGQEINLTTYNLCRINMFLHNVNYEKF- 287

Query: 271 DLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               +I  G TL+    +  + F   +SNPP+  KW+ D +A+          RF P   
Sbjct: 288 ----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLINDP-----RFAPAGI 338

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ +
Sbjct: 339 LAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYV 391

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP DLFF T IAT + +L   K +        ++A+ L+      G K ++    
Sbjct: 392 DAVIQLPADLFFGTTIATCIIVLKKSKGDN---ATLFMDASSLFV---RSGTKNKLSTAH 445

Query: 448 QRRQILDIYVSREN-GKFSRMLD 469
           Q++ ILD + +R++   F+R++D
Sbjct: 446 QKK-ILDGFTARQDIEHFARLVD 467


>gi|295135271|ref|YP_003585947.1| type I restriction-modification system methyltransferase subunit
           like protein [Zunongwangia profunda SM-A87]
 gi|294983286|gb|ADF53751.1| type I restriction-modification system methyltransferase subunit
           like protein [Zunongwangia profunda SM-A87]
          Length = 521

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 188/427 (44%), Gaps = 57/427 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYL 60
           T    S+   +W  A  L G  + +++  V+L    L+    + E   E   +  +EKYL
Sbjct: 6   TTKEKSIEESLWDAANKLRGSIEPSEYKHVVLGLIFLKFASDKFEVRREELIAEGKEKYL 65

Query: 61  A----FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                +   N+   +      Y   N  +  ++ L      N +E    S     K    
Sbjct: 66  EMKDFYNMKNVFFLAETSRWNYLIKNAKQDDIA-LKIDTALNQIEKNNPSL----KGALP 120

Query: 117 DFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           D  FS   + + + + LL  I K    I+   D   D ++  +YE+ + +F     +G  
Sbjct: 121 DNYFSRLGLDKSKLSALLDTINK----IDTQKDKSQD-IVGRVYEYFLSKFALAEGKGKG 175

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ +V+L  A +++P   +          +YDP CG+GG    ++  +    SHH 
Sbjct: 176 EFYTPKSIVNL-IAEMIEPYKGI----------IYDPACGSGGMFVQSIKFIE---SHHG 221

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDLFTGKRFH 293
               +  +GQE    T+ +    + IR         +S N+  +   T S D     +  
Sbjct: 222 SKREISIYGQEYTNTTYKLAKMNLAIR--------GISANLGDKAADTFSNDQHKDLKAD 273

Query: 294 YCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y ++NPPF +K W   ++ ++     G        +P  S+ +  +++++ +KL    + 
Sbjct: 274 YIMANPPFNQKDWRGPQELIDDPRWQG------YEVPPKSNANYGWILNMVSKL----SD 323

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  +L++  L     G  E +IRR L+EN+L+EAI+ LP ++F+ TNI+  +WIL+ 
Sbjct: 324 DGVAGFILANGAL---SGGGEEYKIRRKLVENNLVEAIIILPQNMFYTTNISVTVWILNR 380

Query: 413 RKTEERR 419
            KT   R
Sbjct: 381 NKTAHTR 387


>gi|94986116|ref|YP_605480.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|94556397|gb|ABF46311.1| Type I restriction-modification system DNA methylase [Deinococcus
           geothermalis DSM 11300]
          Length = 517

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 165/337 (48%), Gaps = 54/337 (16%)

Query: 132 LLYKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLA 187
           +L ++    SGI L  +   DR   ++  +YE+ + +F G+E   G E F TPR VV + 
Sbjct: 135 MLGELIDLISGIALGEEG--DRSKDILGRVYEYFLGQFAGAEGKRGGE-FYTPRSVVRVL 191

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L           P   R +YDP CG+GG    +   V + G   +I  I + +GQE 
Sbjct: 192 VEML----------EPYHGR-VYDPCCGSGGMFVQSEKFVQEHGG--RIGDIAI-YGQES 237

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW- 305
              T  +C   + +R +++D R +      +GS   KD     +  + L+NPPF    W 
Sbjct: 238 NYTTWRLCKMNLAVRGIDADIRWN-----NEGS-FHKDELRDLKADFILANPPFNISDWG 291

Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            E+ ++ V          R+  G+P + + +  +L H+ +   L PNG   A +VL++  
Sbjct: 292 GERLREDV----------RWSFGVPPVGNANYAWLQHIHH--HLAPNG--TAGVVLANGS 337

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERR 419
           + + +  SGE EIR+ ++E D+++ +VALP  LF+ T I   LW L+  K       +RR
Sbjct: 338 MSSNQ--SGEGEIRKAMVEADVVDCMVALPGQLFYSTQIPACLWFLARNKNPGKGLRDRR 395

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           G+V  I+A  L   +    + RR + D + ++I D Y
Sbjct: 396 GQVLFIDARKLGVLVD---RTRRELTDAEIQKIADTY 429


>gi|60681329|ref|YP_211473.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           NCTC 9343]
 gi|60492763|emb|CAH07537.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           NCTC 9343]
          Length = 513

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 210/474 (44%), Gaps = 73/474 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGK----VILPFTLLRRLEC----ALEPTRSAVREKYLAFGGSN 66
           +WK A ++ G+   +DF      +I    L  R+E      L+   +  R  + A G  +
Sbjct: 13  LWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDNTDFRTVW-ADGNED 71

Query: 67  IDLE-SFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASF------------SDN 110
           I  E   V +    ++   EY  STL +T+ ++    LE+   SF             D+
Sbjct: 72  IKQELRNVAIEDIGYFLEPEYLFSTL-ATDAKDGKFILEALGQSFKHIEDSTLSADSEDD 130

Query: 111 AKAIFEDFDFSST-IARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            + +F+D D +S  + +   +K  L+  +      I+         ++ + YE++I  F 
Sbjct: 131 FQNLFDDVDLTSVKLGKTADDKNKLISNLLLALDEIDFCLKDTEIDILGDAYEYMIGEFA 190

Query: 168 SEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           +   + A +F TP+ V   LA  +  D +          +R +YDPTCG+G  L      
Sbjct: 191 AGAGQKAGEFYTPQQVSKVLAQIVTADKE---------RVRNVYDPTCGSGSLLL----S 237

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           VA  G    I      +GQE  P T+ +    ML+     D       +I+ G TL  D 
Sbjct: 238 VAKEGFAEFI------YGQEKNPTTYNLARMNMLLHNKRYDKF-----DIRSGDTLEDDQ 286

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F  + F   ++NPPF  +W  D     K + +    R G   PK S     F++H+ + L
Sbjct: 287 FENEVFDAIVANPPFSAQWSADS----KFNTDDRFSRAGALAPK-SKADYAFILHMIHHL 341

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIAT 405
               + GG  A V     LF    G+ E +IRR+L+E  + I+AI+ LP +LF+ T+I T
Sbjct: 342 ----HDGGTMACVAPHGVLFR---GASEGKIRRYLIEAKNYIDAIIGLPANLFYGTSIPT 394

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            + +L  +K  +    V  I+A+  +  I+ + K    ++ +   +I++ Y +R
Sbjct: 395 CILVL--KKCRKEGDDVLFIDASKGFEKIKTQNK----LSPEHIEKIVNTYKNR 442


>gi|190149559|ref|YP_001968084.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914690|gb|ACE60942.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 517

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 202/480 (42%), Gaps = 71/480 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYATWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFS--D 109
             NI L  E  +K  GY  Y +  +      + N  N          ++ES    +   +
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYDSEN 126

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
           + K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE L
Sbjct: 127 DIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D    H I       GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 236 AKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDTL 284

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 445


>gi|325283711|ref|YP_004256252.1| type I restriction-modification system, M subunit [Deinococcus
           proteolyticus MRP]
 gi|324315520|gb|ADY26635.1| type I restriction-modification system, M subunit [Deinococcus
           proteolyticus MRP]
          Length = 505

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 177/396 (44%), Gaps = 58/396 (14%)

Query: 92  GSTNTRNNLESYIASFSDNAKA----IFEDFDFSSTIA---RLEKAGLLYKICKNFSGIE 144
           G+ N    ++  + +  D  K     +F +  F+S  A     E+   L  + ++F    
Sbjct: 90  GADNLGEIIDQALLAIEDANKGKLSGVFRNISFNSEAALGQTKERNIRLKNLLEDFH--- 146

Query: 145 LHP--DTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            HP  D  P R+     + N YE+LI RF +   + A +F TP +V  L  A L  P   
Sbjct: 147 -HPKLDLRPSRIGNLDIIGNAYEYLIGRFAAGAGKKAGEFYTPPEVSDL-MARLTAP--- 201

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                PG    +YDPTCG+G  L     +V   GS +        +GQE    T+A+   
Sbjct: 202 ----QPG--ERIYDPTCGSGSLLIKCAQNVQAQGSQN-----YAIYGQEQNGSTYALARM 250

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEH 316
            M +  ++ D R +    I+    L  D     +F   ++NPPF   KW  + D     H
Sbjct: 251 NMFLHGVD-DARIEWGDTIRNPLHLEDDKLM--KFEVVVANPPFSLDKWGAE-DVSSDRH 306

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K     RF  G+P    G   F+ H+   L      G R  +V+    LF G A   E +
Sbjct: 307 K-----RFERGIPPKGKGDYAFISHMLGSL---AEVGSRMVVVVPHGVLFRGAA---EGK 355

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK--VQLINATDLWTSI 434
           IR  L+E  L++A++ LPT+LFF T I   L +       +R G+  V  I+A+  + + 
Sbjct: 356 IRARLIEEGLLDAVIGLPTNLFFGTGIPAALLVFRKGAEAQRNGQADVLFIDASREFAAG 415

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENG--KFSRML 468
           +N+ + R    +    +I+D Y +R NG  K++R++
Sbjct: 416 KNQNQLR----EADIVKIVDTYRAR-NGVDKYARVV 446


>gi|32455519|ref|NP_862271.1| hypothetical protein pRV500_p03 [Lactobacillus sakei]
 gi|24461246|gb|AAN61993.1|AF438419_3 HsdM [Lactobacillus sakei]
          Length = 510

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +Y++ +  F ++  +   +F TPR +V     +L           P   R +YDP 
Sbjct: 153 VLGRVYDYFLSNFAAQEGKNGGEFYTPRSIVRTLVEML----------EPYKGR-IYDPA 201

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GG    +   V +   H  +   L  +GQE  P T  +    + IR +++D      
Sbjct: 202 AGSGGMFVQSEEFVRE---HQGVISDLSVYGQEANPTTWKLAKMNLAIRGIDND------ 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
               QG T + DL  G+RF Y L+NPPF  K+W  DK   +         R+  G+P   
Sbjct: 253 FGPHQGDTFTNDLHKGRRFDYILANPPFNLKEWGADKLQDD--------SRWVYGVPPEG 304

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   P+G  +A  VL++  L    +   E  IR+ +LE D I+AIVA
Sbjct: 305 NANYAWIEHMISKL--APDG--KAGFVLANGAL--STSTKEEYAIRKAILEADKIDAIVA 358

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  +F+ T I   LW +   K      +R G+   I+A +L
Sbjct: 359 LPGQMFYSTQIPVSLWFVDMNKASSDERKRNGETLFIDAREL 400


>gi|229521080|ref|ZP_04410501.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
 gi|229341965|gb|EEO06966.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
          Length = 529

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 203/498 (40%), Gaps = 76/498 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW  A D+ G     DF + +L  TL  R         +     +V    ++  
Sbjct: 8   AELQRQIWAIANDVRGSVDGWDFKQYVLG-TLFYRFISENFVNYITGGDESVNYAAMSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIASFSDNA------- 111
             NI    E  +K  GY  Y +   S  + +   + N   +L +  A+  ++A       
Sbjct: 67  DENIKFAKEDAIKTKGYFLYPSQLFSNVAANAHKNENLNTDLAAIFAAIENSANGYDSEK 126

Query: 112 --KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLI 163
             K +F DFD +S   RL      K   L  + K  SG+     +     +  + YE LI
Sbjct: 127 DIKGLFADFDTTSN--RLGNTVEAKNKCLAAVLKGVSGLNFGSFEENQIDLFGDAYEFLI 184

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A
Sbjct: 185 SNYAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTSVNKIYDPAAGSGSLLLQA 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H       H I       GQEL   T+ +    M +  +  D       NIQ G TL 
Sbjct: 237 KKHF----DAHIIEDGFF--GQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTLI 285

Query: 284 KDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           +  F  +R    F   +SNPP+  KW    D            RF P   L   S     
Sbjct: 286 EPHFLEERNNRGFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFA 340

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 341 FVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNL 393

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR-----RQI 452
           FF T IA  + +LS  KT+      Q I+A+ L+    N        NDD++     +QI
Sbjct: 394 FFGTTIAVNILVLSKHKTDT---TTQFIDASGLFKKETNNNVLTD--NDDEKNPGHIQQI 448

Query: 453 LDIYVSREN-GKFSRMLD 469
           + ++ S+EN   F++ +D
Sbjct: 449 IKVFASKENVDHFAKSVD 466


>gi|312902060|ref|ZP_07761321.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0470]
 gi|311290842|gb|EFQ69398.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0470]
          Length = 529

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPYQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T+ +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTYNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LATEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|289550025|ref|YP_003470929.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus lugdunensis HKU09-01]
 gi|289179557|gb|ADC86802.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus lugdunensis HKU09-01]
          Length = 518

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 204/477 (42%), Gaps = 67/477 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAF--GGS 65
           A L   +W  A DL G+    +F   IL     R L    E   + + +E  +++    +
Sbjct: 12  ADLQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKNEDIAAGLLKEDDISYEEAMN 71

Query: 66  NIDLESFVK---VAGYSFYNTSEYSLSTLGS------------TNTRNNLESYIASFS-- 108
           N   +  V+   +A   F    ++  S L +            +N   N+E+        
Sbjct: 72  NDTYKPIVEKELIARIGFVIEPQFLFSNLINKIEAQTFQIEDLSNAVKNVENSTRGHDSE 131

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIR 164
           D+   +F+D D +S+       ++  L+ K+    + +  +H D   D ++ + YE+LI 
Sbjct: 132 DDFIHLFDDMDLTSSRLGNTNAKRTQLISKVMVQIATLPFVHSDLEID-MLGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   + A +F TP+ V  +   ++    + L        R++YDPTCG+G  L    
Sbjct: 191 QFAASAGKKAGEFYTPQQVSTILAKIVTTGRNDL--------RSIYDPTCGSGSLLLR-- 240

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G+  K+      +GQE    T+ +    ML+  +     +     I+   TL  
Sbjct: 241 -----VGAEAKVRQY---YGQEYNSTTYNLARMNMLLHDVNYKQFQ-----IENDDTLES 287

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +RF   ++NPP+   W  D   +E E        +G   PK +     F+ H+  
Sbjct: 288 PAVHDERFDAVVANPPYSAHWSADPSFLEDER----FSNYGKLAPKKT-ADYAFIQHMIY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IR++L+E+ + I+A++ LP +LFF TNI
Sbjct: 343 HLD----DHGTMAVVLPHGVLFRGNA---EGTIRKYLIEDKNYIDAVIGLPANLFFGTNI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            T   IL  +K  E    V  I+A+  +     +GK +  + DD   +I+D Y  RE
Sbjct: 396 PT--CILVFKKCREESDDVLFIDASQSF----EKGKNQNHLTDDDVNKIVDTYRQRE 446


>gi|71275992|ref|ZP_00652274.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71899062|ref|ZP_00681227.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71163225|gb|EAO12945.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71731175|gb|EAO33241.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 524

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 160/333 (48%), Gaps = 46/333 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATA 189
           +L ++    SGI L+ +    + ++  +YE+ + +F G+E   G E F TPR VV +   
Sbjct: 137 MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQFAGAEGKRGGE-FYTPRSVVRVLVQ 195

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L           P   R +YDP CG+GG    +   V + G   +I  I + +GQE   
Sbjct: 196 ML----------EPYSGR-VYDPCCGSGGMFVQSEKFVLEHGG--RIGDIAI-YGQESNY 241

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD 308
            T  +    + +R ++SD R +      +GS    D     +  Y L+NPPF    W  D
Sbjct: 242 TTWRLAKMNLAVRGIDSDIRWN-----NEGS-FHNDALRDLKADYILANPPFNISDWGGD 295

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +          E  R+  G+P   + +  +L H+ +   L PNG   A +VL++  + + 
Sbjct: 296 RLR--------EDVRWKFGVPPAGNANYAWLQHIYH--HLAPNG--TAGVVLANGSMSSN 343

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQ 423
              SGE EIR  ++E D+++ +VA+P  LF+ T I   LW L+  K       +RRG+V 
Sbjct: 344 H--SGEGEIRTHMIEADIVDCMVAMPGQLFYSTQIPACLWFLARNKNPGKGLRDRRGQVL 401

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           L++A  L   +    + RR + D+Q ++I D Y
Sbjct: 402 LMDARALGVLVD---RTRRELTDEQIQKIADTY 431


>gi|314934744|ref|ZP_07842103.1| type I restriction-modification system, M subunit [Staphylococcus
           caprae C87]
 gi|313652674|gb|EFS16437.1| type I restriction-modification system, M subunit [Staphylococcus
           caprae C87]
          Length = 518

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/477 (24%), Positives = 204/477 (42%), Gaps = 67/477 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVREKYLAFGGS-- 65
           A L   +W  A DL G+    +F   IL     R L   +E T +  + E  + +  +  
Sbjct: 12  AELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSARLLAEDNITYSEAMN 71

Query: 66  NIDLESFVK---VAGYSFYNTSEYSLSTLGS------------TNTRNNLESYIASFS-- 108
           N D    V+   +    F    E   S L +            +N   N+E+        
Sbjct: 72  NEDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFEIEDLSNAIKNVENSTRGHESE 131

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIR 164
           D+   +F+D D +S+        +  L+ K+  N S +  +H D   D ++ + YE+LI 
Sbjct: 132 DDFIHLFDDMDLNSSRLGNTNAARTKLIGKVMMNISTLPFVHSDLEID-MLGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G  L    
Sbjct: 191 QFAANAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGSLLLR-- 240

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G   K+      +GQE    T+ +    ML+  +     +     I+ G TL  
Sbjct: 241 -----VGREAKVRNY---YGQEYNSTTYNLARMNMLLHDVNFKAFQ-----IENGDTLED 287

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               G++F   ++NPP+  KW  +   ++ E        +G   PK S     F+ H+  
Sbjct: 288 PAHRGEQFDAVVANPPYSAKWSAEPSFLDDER----FSDYGKLAPK-SKADFAFIQHMIY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I
Sbjct: 343 HLD----DEGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGTSI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            T + +   +K  +    V  I+A+  +     +GK +  + D+   +I++ Y  RE
Sbjct: 396 PTCVLVF--KKCRKADDDVVFIDASQSF----EKGKNQNHLTDEDVEKIVETYSKRE 446


>gi|94991200|ref|YP_599300.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10270]
 gi|94544708|gb|ABF34756.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10270]
          Length = 526

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 179/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           DD  ++ILD Y SR+N  KFS +  +
Sbjct: 430 DDHIKKILDAYKSRDNSDKFSYLASF 455


>gi|294339298|emb|CAZ87654.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
          Length = 521

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 157/345 (45%), Gaps = 43/345 (12%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           A+LE  G + ++    S I     T    V+  +YE+ + +F S   +    F TP  VV
Sbjct: 133 AQLEP-GKMGELVDLVSTIGFGSGTHAKDVLGEVYEYFLGQFASAEGKKGGQFYTPASVV 191

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L          +P   + +YDP CG+GG    +   +   G       I   +G
Sbjct: 192 KVLVEVL----------APHKGK-VYDPCCGSGGMFVQSEKFIESHGGRFGDISI---YG 237

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE  P T  +    + IR +      D +   +   T  +D     +  Y L+NPPF   
Sbjct: 238 QEANPTTWRLVAMNLAIRGM------DFNLGKEPADTFHRDQHPDLKADYVLANPPFNIS 291

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W  D+   +K        R+  G P  S+ +  +L H+   L    N  G+A +VL++ 
Sbjct: 292 DWGGDRLLDDK--------RWLYGTPNPSNANYAWLQHILWHL----NASGQAGVVLANG 339

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---EERRG 420
            + + +  + E  IR+ ++E D++E +VALP  LFF T I   LW L+  KT    +RRG
Sbjct: 340 SMSSNQ--NNEGVIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLTKSKTAHGRDRRG 397

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-IYVSRENGKF 464
           +V  I+A  L    R EG+  R+ +D+   +I D ++  R++G+ 
Sbjct: 398 EVLFIDARKLG---RMEGRVFRVFDDEDVAKIADTVHRWRQDGQL 439


>gi|302331823|gb|ADL22016.1| type I site-specific deoxyribonuclease methyltransferase subunit,
           HsdM [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 504

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 145/310 (46%), Gaps = 42/310 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++ +P +            +YDP 
Sbjct: 147 VLGRVYEYFIAKFASAEGKNAGEFYTPASIVKLLVEMV-EPYEG----------RIYDPC 195

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR +++D      
Sbjct: 196 CGSGGMFVQSERFVE---RHQGRLDNIAVYGQESNPTTWKLAKMNLAIRGIDNDL----- 247

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T   DL    +  + L+NPPF    W ++K   +         R+  G+P   
Sbjct: 248 -GDHHADTFHNDLHKDLKADFILANPPFNASDWGREKLLDDY--------RWKFGIPPKG 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   P+G   A  VL++  +    +G  E EIR+ L+E DL+E IV 
Sbjct: 299 NANYAWIEHMISKL--APSG--TAGFVLANGSM--STSGKDELEIRKNLIEQDLVECIVT 352

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF+ T I   LW ++  K +    ERRG+V  I+A ++ + +    K+   ++DD+
Sbjct: 353 LPGQLFYSTQIPVCLWFVTKNKAKNGKNERRGEVLFIDARNIGSMVSRTLKE---VSDDE 409

Query: 449 RRQILDIYVS 458
            + I ++Y S
Sbjct: 410 IKDIANVYHS 419


>gi|291546500|emb|CBL19608.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 552

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 51/317 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ ++ F    ++   +F TP DVV L  A +++P D           TLYDP 
Sbjct: 168 LIGRVYEYFLKEFAVNATKEEGEFYTPHDVVQL-IATMIEPYDG----------TLYDPC 216

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V        +  I V +GQE EP T+ +    + +R         +S
Sbjct: 217 CGSGGMFIQSAELVK--SKQGNLNGINV-YGQEKEPATYRLAKMNLALR--------GIS 265

Query: 274 KNI--QQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP-GLP 329
            N+  +  S+ + DL  G  F+Y ++NPPF  K W  D        KN   GR+     P
Sbjct: 266 HNLGEEADSSFTHDLHKGLHFNYIMANPPFNLKGWYNDN------LKND--GRWSDYQTP 317

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+ +  +++H+ + L+      G A  +L++  L +    S   EIR+ L++ND IEA
Sbjct: 318 PESNANYAWILHILSHLK---KTDGVAGFLLANGALND----SDTLEIRKELIQNDKIEA 370

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDL--WT--SIRNEGK 439
           IV LP +LF  T+I+  LWIL+  K   +      R +   I   DL  WT  +++ E K
Sbjct: 371 IVVLPRELFITTDISVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESK 430

Query: 440 KRRIINDDQRRQILDIY 456
           K+  ++ +Q  +  DIY
Sbjct: 431 KKVRLDTEQIEKAADIY 447


>gi|323438646|gb|EGA96389.1| type I restriction-modification system M subunit [Staphylococcus
           aureus O11]
          Length = 371

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 154/335 (45%), Gaps = 44/335 (13%)

Query: 128 EKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           E+  L+ K+  N   +  +H D   D ++ + YE LI RF +   + A +F TP+ V  +
Sbjct: 7   ERTALISKVMVNLDDLPFVHSDMEID-MLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKI 65

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++ D  D L        R +YDPTCG+G  L              K   +    GQE
Sbjct: 66  LAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV----------GKETQVYRYFGQE 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW 
Sbjct: 108 RNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWT 162

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D      E  +G    +G   PK S     F+ H+ + L+      G  A+VL    LF
Sbjct: 163 ADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD----DEGTMAVVLPHGVLF 213

Query: 367 NGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
            G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T   IL  +K  ++   V  I
Sbjct: 214 RGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CILVFKKCRQQDDNVLFI 268

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +A++ +     +GK +  ++D Q  +I++ Y  +E
Sbjct: 269 DASNDF----EKGKNQNHLSDAQVERIINTYKCKE 299


>gi|167620605|ref|ZP_02389236.1| type I restriction-modification system, M subunit [Burkholderia
           thailandensis Bt4]
          Length = 542

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 168/363 (46%), Gaps = 53/363 (14%)

Query: 112 KAIFEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           + +F + DF+S  A L KA      L  + ++F+ ++L P  V + V+ N Y +LI RFG
Sbjct: 133 EGVFRNIDFNSE-ANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSEDVIGNTYIYLIERFG 191

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  + A +F TP+ V  L +AL         +  PG    + DP+CG+G  L +A   V
Sbjct: 192 SDAGKKAGEFYTPKMVSRLLSALA--------RPKPG--DRICDPSCGSGSLLIEAAQMV 241

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDL 286
               SH+         G+E+   T A+    M I   +       +  I+   TL S  L
Sbjct: 242 EAQDSHN-----YALFGEEVNGATWALARMNMFIHSKD-------AARIEWCDTLNSPAL 289

Query: 287 FTGKR---FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             G R   F+  ++NPPF   KW  D         N    RF  G+P  S G   F++++
Sbjct: 290 IEGDRLMKFNVVVANPPFSLDKWGAD------HADNDRFNRFWRGVPPKSKGDWAFIVNM 343

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             +  LP    GR A+V+    LF G A   E  IR+ L+E +L++A+V LP +LF  T+
Sbjct: 344 IER-ALPQE--GRVAVVVPHGVLFRGGA---EGRIRQKLIEENLLDAVVGLPGNLFPTTS 397

Query: 403 IATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKK-----RRIINDDQRRQIL 453
           I   + +    + +    E    V  ++A+  +   +N+ +       +I+     R+I+
Sbjct: 398 IPVAILLFDRSREKGGPSEHVRDVLFVDASREFIPGKNQNQLSDEHFEKIVTTVAERRIV 457

Query: 454 DIY 456
           D Y
Sbjct: 458 DKY 460


>gi|332829719|gb|EGK02365.1| type I restriction-modification system, M subunit [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 513

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 163/362 (45%), Gaps = 47/362 (12%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKN 139
           ++ L  LG +       +  A   D+ + +F+D D +S  A+L     +K  L+  +   
Sbjct: 105 KFILEALGQSFKHIEDSTLSADSEDDFQNLFDDVDLTS--AKLGKTADDKNKLISNLLLA 162

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDAL 198
              I+         ++ + YE++I  F +   + A +F TP+ V   LA  +  D +   
Sbjct: 163 LDEIDFCLKDTEIDILGDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKE--- 219

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                  +R +YDPTCG+G  L      VA  G    I      +GQE  P T+ +    
Sbjct: 220 ------RVRNVYDPTCGSGSLLL----SVAKEGFAEFI------YGQEKNPTTYNLARMN 263

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+     D        I+ G TL  D F  + F   ++NPPF  +W  D+    K + +
Sbjct: 264 MLLHNKRYDKFE-----IRSGDTLEDDQFESEVFDAIVANPPFSAQWSADR----KFNTD 314

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R G   PK S     F++H+ + L    + GG  A V     LF    G+ E +IR
Sbjct: 315 DRFSRAGALAPK-SKADYAFILHMIHHL----HDGGTMACVAPHGVLFR---GASEGKIR 366

Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+L+E  + I+AI+ LP +LF+ T+I T + +L  +K  +    V  I+A+  +  ++ +
Sbjct: 367 RYLVETKNYIDAIIGLPANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKVKTQ 424

Query: 438 GK 439
            K
Sbjct: 425 NK 426


>gi|312115547|ref|YP_004013143.1| type I restriction-modification system, M subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220676|gb|ADP72044.1| type I restriction-modification system, M subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 824

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 157/323 (48%), Gaps = 43/323 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++        + +  + +TLYD
Sbjct: 137 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAKVIG------IRHAKSVSQTLYD 190

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +           P  +  +GQE +  T A+    M+   L   P  D
Sbjct: 191 PTCGSGSLLLKARSES---------PVGITVYGQEKDVATRALAKMNMV---LHDCPDAD 238

Query: 272 LSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           + ++    +TLS   F     + KRF + ++NPPF  K      ++  +  +G   RF  
Sbjct: 239 IVRD----NTLSSPYFREKDQSLKRFDFVVANPPFSDKAWTTGVSLGSDDPDG---RFEY 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   +G   +L+H+   L+      G+ AI+L    LF G A   E+EIR+ ++    
Sbjct: 292 GTPPAKNGDYAYLLHVIASLK----STGKGAIILPHGVLFRGNA---EAEIRKNIIAKGF 344

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP +LF+ T I   + +L +++  +RR  + +I+A+  +     +G K R+   
Sbjct: 345 IKGIIGLPANLFYGTGIPACIIVL-DKENADRRTGIFMIDASKGFV---KDGNKNRLRAQ 400

Query: 447 DQRRQILDIYVSR-ENGKFSRML 468
           D  + I+D +  + E  KFSR++
Sbjct: 401 DIHK-IVDAFTKQIEIEKFSRLV 422


>gi|153811191|ref|ZP_01963859.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174]
 gi|149832689|gb|EDM87773.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174]
          Length = 535

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 51/317 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ ++ F    ++   +F TP DVV L  A +++P D           TLYDP 
Sbjct: 168 LIGRVYEYFLKEFAVNATKEEGEFYTPHDVVQL-IATMIEPYDG----------TLYDPC 216

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V        +  I V +GQE EP T+ +    + +R         +S
Sbjct: 217 CGSGGMFIQSAELVK--SKQGNLNGINV-YGQEKEPATYRLAKMNLALR--------GIS 265

Query: 274 KNI--QQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP-GLP 329
            N+  +  S+ + DL  G  F+Y ++NPPF  K W  D        KN   GR+     P
Sbjct: 266 HNLGEEADSSFTHDLHKGLHFNYIMANPPFNLKGWYNDN------LKND--GRWSDYQTP 317

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+ +  +++H+ + L+      G A  +L++  L +    S   EIR+ L++ND IEA
Sbjct: 318 PESNANYAWILHILSHLK---KTDGVAGFLLANGALND----SDTLEIRKELIQNDKIEA 370

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDL--WT--SIRNEGK 439
           IV LP +LF  T+I+  LWIL+  K   +      R +   I   DL  WT  +++ E K
Sbjct: 371 IVVLPRELFITTDISVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESK 430

Query: 440 KRRIINDDQRRQILDIY 456
           K+  ++ +Q  +  DIY
Sbjct: 431 KKVRLDTEQIEKAADIY 447


>gi|189501455|ref|YP_001960925.1| type I restriction-modification system, M subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189496896|gb|ACE05444.1| type I restriction-modification system, M subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 527

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 173/379 (45%), Gaps = 63/379 (16%)

Query: 112 KAIFEDFDFSSTIARLEKAG----LLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRR 165
           + +F + DF+S  A L K       L ++ ++F   +L+  P  V + V+ N Y +LI R
Sbjct: 133 EGVFRNIDFNSE-ANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGNTYIYLIER 191

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S+  + A +F TP  V  L  A L DP        PG    + DP CG+GG L  A  
Sbjct: 192 FASDSGKKAGEFFTPFKVSEL-VAKLADP-------RPG--DRICDPACGSGGLLIKAAK 241

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V D              GQE    T A+C   M +   +S         I+   TL+  
Sbjct: 242 EVGDRN--------FALFGQESNGSTWALCRMNMFLHSFDS-------ARIEWCDTLNSP 286

Query: 286 LFTGK----RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           L        +F+  ++NPPF   KW  +        ++ +  RF  G+P  S G   F+ 
Sbjct: 287 LLVENDRLMKFNCVVANPPFSLDKWGAEN------AESDQYNRFWRGVPPKSKGDWSFIS 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   +E+     GR A+V+    LF G A   E  IR+ ++E +L++A++ LP +LF  
Sbjct: 341 HM---VEIALEKEGRVAVVVPHGVLFRGAA---EGRIRQKMIEENLLDAVIGLPGNLFQT 394

Query: 401 TNIATYLWIL------SNRKTEERRGK---VQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           TNI   + +       + + T+  +G+   V  ++A+  + S    GK +  ++D+Q  +
Sbjct: 395 TNIPVAILVFDRSREGTTKDTKSTKGENRDVLFVDASREFVS----GKNQNTLSDEQIAK 450

Query: 452 ILDIYVSR-ENGKFSRMLD 469
           I+  Y  R E  K++ + D
Sbjct: 451 IMRTYRERTEVEKYAHVAD 469


>gi|239906157|ref|YP_002952896.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1]
 gi|239796021|dbj|BAH75010.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1]
          Length = 531

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 207/445 (46%), Gaps = 68/445 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------- 56
           TG+       ++K A+ L G+ + +D+  V L    L+ +  + E   +A+         
Sbjct: 27  TGANLGFEGELFKAADKLRGNMEPSDYKHVALGLIFLKHISDSFEAKHAALTAEDPSCAE 86

Query: 57  --EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
             ++YLA        E+   V   + ++  + +    G     ++    I + +++ K +
Sbjct: 87  DPDEYLA--------ENIFWVPKEARWSHLQANAKQPGIGKIVDDALVAIEAKNESLKGV 138

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSE 172
               D++     L K  +L ++    SGI L  +    R V+  +YE+ + +F GSE   
Sbjct: 139 LPK-DYARPA--LNKV-MLGELIDLISGIGLGTEQGQSRDVLGRVYEYFLSQFAGSEGKR 194

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G E F TPR VV +   +L +P    FK        +YDP CG+GG    +   VA+ G 
Sbjct: 195 GGE-FYTPRSVVRVLVDML-EP----FKGR------VYDPCCGSGGMFVQSNKFVAEHGG 242

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             ++  I + +GQE    T  +C   + +R ++SD R +      +GS   KD     R 
Sbjct: 243 --RLGDIAI-YGQESNYTTWRLCKMNLAVRGIDSDIRWN-----SEGS-FHKDELKDLRA 293

Query: 293 HYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            + L+NPPF    W  E+ ++ V          R+  G+P   + +  +L H+ +   L 
Sbjct: 294 DFILANPPFNISDWGGERLREDV----------RWSFGIPPAGNANFAWLQHIFH--HLG 341

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
           PNG   A +VL++  + + +  SGE +IR+ +LE D+++ ++ALP  LF+ T I   LW 
Sbjct: 342 PNG--TAGVVLANGSMSSSQ--SGEGDIRKAMLEADVVDCMIALPGQLFYSTQIPACLWF 397

Query: 410 L----SNRKTEERRGKVQLINATDL 430
           L    +N    +RRG+V  I+A  L
Sbjct: 398 LARDKANHGFRDRRGEVLFIDARKL 422


>gi|323497665|ref|ZP_08102681.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326]
 gi|323317248|gb|EGA70243.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326]
          Length = 538

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 177/411 (43%), Gaps = 50/411 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E  R   + ++  AF    ++++ F 
Sbjct: 21  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQQMIDDEQEAF----VEMKEFY 76

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------KAIFEDFDFSSTIAR 126
           +     FY       S +     ++N+   I +   N        K    D  FS     
Sbjct: 77  QQDNI-FYLEEASRWSYVKKHAKQDNIAVIIDTALSNIEKANPSLKGALPDNYFSRQDLE 135

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++K   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ VV L
Sbjct: 136 VKKLASLIDTIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSVVTL 195

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T +L +P              +YDP CG+GG    ++  V     H      +  +GQE
Sbjct: 196 LTEML-EPFQG----------KIYDPACGSGGMFVQSLKFVK---QHEGRTKDIAIYGQE 241

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFGKK 304
           L   T+ +    + IR         LS N+ +    T   D     +  Y ++NPPF   
Sbjct: 242 LTSTTYKLAKMNLAIR--------GLSGNLGERPADTFFADQHKDLKADYIMANPPFNIS 293

Query: 305 WEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             +D++ + K+       RF G   P   + +  +++H+ +KL    +  G A  VL++ 
Sbjct: 294 QWRDENELTKDP------RFSGYRTPPTGNANYGWILHMLSKL----SETGTAGFVLANG 343

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            + +    SGE EIR+ L+END++E ++ALP  LF+ T I   +W ++  K
Sbjct: 344 SMSSNT--SGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNK 392


>gi|323491151|ref|ZP_08096339.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Vibrio brasiliensis LMG
           20546]
 gi|323314616|gb|EGA67692.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Vibrio brasiliensis LMG
           20546]
          Length = 538

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 179/411 (43%), Gaps = 50/411 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E  R   + +   AF    +D++ F 
Sbjct: 21  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQKMIDDGQEAF----VDMKEFY 76

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSD---NAKAIFEDFDFSSTIAR 126
           +     FY       S +     ++N+    ++ +AS      + K    D  FS     
Sbjct: 77  QQDNI-FYLEESSRWSFVQKHAKQDNIAVVIDTALASIEKANPSLKGALPDNYFSRQDLE 135

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++K   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ VV L
Sbjct: 136 VKKLASLIDTIENIDTLADECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSVVTL 195

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T +L +P              +YDP CG+GG    ++  V     H      +  +GQE
Sbjct: 196 LTEML-EPFQG----------KIYDPACGSGGMFVQSLKFVK---QHEGRTKDIAIYGQE 241

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFGKK 304
           L   T+ +    + IR         LS N+ +    T   D     +  Y ++NPPF   
Sbjct: 242 LTSTTYKLAKMNLAIR--------GLSGNLGERPADTFFADQHKDLKADYIMANPPFNIS 293

Query: 305 WEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             +D++ + K+       RF G   P   + +  +++H+ +KL    +  G A  VL++ 
Sbjct: 294 QWRDENELTKDP------RFSGYRTPPTGNANYGWILHMLSKL----SETGTAGFVLANG 343

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            + +    SGE EIR+ L+END++E ++ALP  LF+ T I   +W ++  K
Sbjct: 344 SMSSNT--SGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNK 392


>gi|269468493|gb|EEZ80151.1| type I site-specific deoxyribonuclease [uncultured SUP05 cluster
           bacterium]
          Length = 437

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 169/372 (45%), Gaps = 44/372 (11%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFEDFDFSST-IAR 126
           E F ++A     +T+ + L  L  T    N+E     +   D+   +FED D +ST + R
Sbjct: 94  ELFGEIAKRGNGDTNNFILEDL--TQILRNVEQSTMGYESEDDFGHLFEDLDLTSTKLGR 151

Query: 127 LEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            E+A   L+ K+  +   I    D +   V+ + YE+LI +F +   + A +F TP+ V 
Sbjct: 152 TEEAKNTLIAKVLFHLDQINFDLDNIESDVLGDAYEYLIGQFAAGAGKKAGEFYTPQQVS 211

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   ++              ++++YDPTCG+G  L      V D  +          +G
Sbjct: 212 KVLAKIV--------TTGKSKLKSVYDPTCGSGSLLLRVAKEVDDVSNF---------YG 254

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL   T+ +    M++  +          +I+Q  T+       +RF   ++NPPF   
Sbjct: 255 QELNRTTYNLARMNMILHDIHYRKF-----DIKQEDTIEHPQHIDERFEAVVANPPFSAH 309

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W     A      +    ++G   PK +     F+ H+ ++L+      G  AIVL    
Sbjct: 310 WS----ANPLHMSDDRFSQYGKLAPK-TKADFAFVQHMIHQLD----ENGTMAIVLPHGV 360

Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF G A   E  IR++L+E+ + ++A++ LP ++F+ T+I T + +   +K  E    + 
Sbjct: 361 LFRGAA---EGHIRKYLIEDKNYLDAVIGLPANIFYGTSIPTCVLVF--KKCREDSSNIL 415

Query: 424 LINATDLWTSIR 435
            I+A++ +  ++
Sbjct: 416 FIDASNEFEKVK 427


>gi|291288564|ref|YP_003505380.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885724|gb|ADD69424.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 521

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 184/422 (43%), Gaps = 73/422 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGSNIDLE 70
           +W +A  L G  + +++  V+L    L+      E  +  +    +EKY        D+ 
Sbjct: 14  LWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFEERKKELIAEGKEKY-------TDMV 66

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAI---FEDFDFSST 123
            F  +    FY   E   S +   + ++N+    ++ +++   N  A+     D  FS  
Sbjct: 67  EFYTMRNV-FYLPEESRWSHIKKNSKQSNIALIVDTALSTVEKNNAALKGALPDNYFSRL 125

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                K   L     N        DT+ D+   ++  +YE+ + +F     +G  +F TP
Sbjct: 126 GLETSKLAALIDTISNI-------DTLKDKERDIVGKVYEYFLSKFALAEGKGKGEFYTP 178

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + +V+L  A +++P              +YDP CG+GG    +M  +     + K   I 
Sbjct: 179 KSIVNL-IAEMIEPYKG----------KIYDPCCGSGGMFVQSMKFIDAHKGNRKDVSI- 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF-----HYC 295
             +GQEL   T+ +    + IR         +S N+ +   + KD F   +F      Y 
Sbjct: 227 --YGQELTAATYKLAKMNLAIR--------GISANLGE---IGKDTFLNDQFPDLKADYI 273

Query: 296 LSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF +K W    +       NG         P + + +  +++H+ +KL    +  G
Sbjct: 274 MANPPFNQKDWRAGTELTSDPRWNGY------ETPPVGNANYGWILHMVSKL----SENG 323

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L++  L     G  E +IR+ ++EN+L+EAI+ LP ++F+ TNI+  LWI++  K
Sbjct: 324 VAGFILANGAL---SGGGDEYKIRKKIIENNLVEAIIILPQNMFYTTNISVTLWIINKNK 380

Query: 415 TE 416
            E
Sbjct: 381 KE 382


>gi|323937174|gb|EGB33454.1| N-6 DNA methylase [Escherichia coli E1520]
          Length = 507

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 174/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H+     L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHNSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFISHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  ++++  +
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKA----GKNQNQLSEENIK 427

Query: 451 QILDIYVSREN 461
           +I+  Y   +N
Sbjct: 428 KIVKTYRDGDN 438


>gi|326314830|ref|YP_004232502.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371666|gb|ADX43935.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 540

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 193/472 (40%), Gaps = 96/472 (20%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L +++W++A  L G    +DF   I     L+R     E                   +
Sbjct: 7   TLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEER-----------------V 49

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI---FEDFDFSST--- 123
           +   +V G S  + +   L   G           IA   +  +A+   F D + ++T   
Sbjct: 50  KQLQQVEGLSLLDATVEVLDKWGDFPPEARWSHLIARTENIGEALDKAFADIEANNTELQ 109

Query: 124 ---------IARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                      R+     L ++ ++F+   L + D     ++ + YE+LI++F  +  + 
Sbjct: 110 HVLTATQYGDKRVLSDATLQRLLRHFNQYRLGNADLYKADMLGDAYEYLIKQFADDAGKK 169

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--G 231
             +F TP+ VV L   L+ DP        PG   ++YDPTCG+GG L ++ +H+A    G
Sbjct: 170 GGEFYTPKAVVQLVVELI-DP-------QPG--HSVYDPTCGSGGMLVESAHHIAKLPKG 219

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTG 289
           +    P  L+ +GQE    T A+    + +  + +         I +G TL   + L  G
Sbjct: 220 TLLGQPNALL-YGQEKNLGTWAIAKLNLYLHNMRA--------QIDRGDTLVEPRHLEGG 270

Query: 290 --KRFHYCLSNPPF-GKKW----EKDKDAVEKEHKNGE----------------LGRFGP 326
             K F   ++NPPF  K W    E + +A +      +                 GRF  
Sbjct: 271 YLKTFDRVIANPPFSAKAWWTPLELEAEAAQDSEGGADNNRKPKTPNYKTVSDPFGRFSY 330

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL---- 382
           G+P      + F  H+   L+      GR  I+L    LF G     E +IR  LL    
Sbjct: 331 GVPPRGYADLAFAQHMLASLK----ADGRMGIILPHGVLFRG---GEEGKIREGLLFGTD 383

Query: 383 ------ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                   DLIEAIV LP  LF+ T I   + +L+ RK    RGKV +I+A+
Sbjct: 384 AASGGQPGDLIEAIVGLPPALFYNTGIPACVLVLNKRKPVGLRGKVIIIDAS 435


>gi|325695188|gb|EGD37089.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK150]
          Length = 535

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 43/323 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           ++ + YE+LI +F ++  + A +F TP+ V  L T  A L   D   F        TLYD
Sbjct: 177 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDQKGF--------TLYD 228

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L +A  +  + G+       +   GQEL   T+ +    M++  +  +    
Sbjct: 229 PTMGSGSLLLNAKRYSHEAGT-------VSYFGQELNTATYNLARMNMILHGVPIE---- 277

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            ++ +    TL +D  T +   F   L NPP+  KW     A +   ++     FG   P
Sbjct: 278 -NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWS----AADGFLQDPRFSSFGALAP 332

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+     GG  AIVL    LF G A   E +IR+ LLE   I+ 
Sbjct: 333 K-SKADFAFLLHGFYHLK---QAGGVMAIVLPHGVLFRGNA---EGKIRKALLEEGAIDT 385

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D   
Sbjct: 386 VIGLPANIFFNTSIPTTVIILKKDRTNR---DVFFIDASKEF----DKGKNQNIMTDIHI 438

Query: 450 RQILDIYVSREN-GKFSRMLDYR 471
            +IL++Y +RE+  KFS +  + 
Sbjct: 439 DKILEVYKAREDVNKFSHLASFE 461


>gi|229021766|ref|ZP_04178344.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1272]
 gi|228739513|gb|EEL89931.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1272]
          Length = 402

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 161/351 (45%), Gaps = 45/351 (12%)

Query: 114 IFEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F+D D  SS + R  KA   L+ K+  N + I    D V   V+ + YE++I +F +  
Sbjct: 25  LFDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMISQFAANA 84

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  +   ++              I+ +YD TCG+G  L          
Sbjct: 85  GKKAGEFYTPQQVSRILAKIV--------TAGKTEIKDVYDGTCGSGSLLL-------RV 129

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G   K+      +GQE    T+ +    ML+  +   P +    +I+   TL +     K
Sbjct: 130 GKEAKVYNY---YGQEKVSTTYNLARMNMLLHDI---PYQRF--DIKNADTLEEPQHLDK 181

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPP+  KW  D D  + + +     +  P     S     F+ H  + L    
Sbjct: 182 RFEAIVANPPYSAKWSAD-DKFQDDERFSNYAKLAPK----SKADFAFVQHFIHHLA--- 233

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWI 409
              G  A+VL    LF G A   E  IR++L+ E + ++A++ LP ++FF T+I T + +
Sbjct: 234 -DNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTSIPTCILV 289

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L  +K  +    V  I+A++ +     +GK +  + D+   +I++ Y+SRE
Sbjct: 290 L--KKCRKHDDNVIFIDASNEF----EKGKNQNHLADEHVEKIVNTYLSRE 334


>gi|229120553|ref|ZP_04249798.1| Type I restriction-modification system, M subunit [Bacillus cereus
           95/8201]
 gi|228662838|gb|EEL18433.1| Type I restriction-modification system, M subunit [Bacillus cereus
           95/8201]
          Length = 530

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           V+ + YE LI +F SE  + A +F TP +V  +    A +   D  LF        +++D
Sbjct: 172 VIGDAYEFLISQFASEAGKKAGEFYTPHEVSDMMARIAAIGQEDKKLF--------SVFD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++         P  +  HGQEL   T+ +    +++  ++ +  R 
Sbjct: 224 PTMGSGSLMLNIRNYI-------NYPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR- 275

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               ++   TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   P
Sbjct: 276 ----LRNADTLNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLD----DSRFNRYGKLAP 327

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A
Sbjct: 328 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDA 379

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LFF T+I T + IL  NR T +    V  I+A++ +T  +N+ K    ++ + 
Sbjct: 380 VIGMPANLFFGTSIPTTVIILKKNRTTRD----VLFIDASNEFTKGKNQNK----LSKEN 431

Query: 449 RRQILDIYVSREN 461
             +I++ Y  RE+
Sbjct: 432 IDKIVETYKKRED 444


>gi|70725065|ref|YP_251979.1| type I restriction-modification system DNA methylase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68445789|dbj|BAE03373.1| type I restriction-modification system DNA methylase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 504

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++           P   R +YDP 
Sbjct: 147 VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI----------EPYKGR-IYDPC 195

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR +++D      
Sbjct: 196 CGSGGMFVQSERFVE---KHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGE--- 249

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   DL  G +  Y L+NPPF    W +++   +         R+  G+P   
Sbjct: 250 ---RNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY--------RWQFGVPPKG 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   PNG   A  VL++  +    +G  E EIR+ L+E DL+E IV 
Sbjct: 299 NANYAWIEHMISKL--APNG--TAGFVLANGSM--STSGKDELEIRKNLIEQDLVECIVT 352

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  LF+ T I   LW +SN K +    ER+ ++  I+A ++
Sbjct: 353 LPGQLFYSTQIPVCLWFISNNKGQNGKKERKNEILFIDAREI 394


>gi|317501108|ref|ZP_07959314.1| type I restriction-modification system [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897495|gb|EFV19560.1| type I restriction-modification system [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 501

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/471 (22%), Positives = 197/471 (41%), Gaps = 57/471 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  LWG    +++  VI+    L+ +  A +      + + L
Sbjct: 1   MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDK-----KYQQL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +    +    F+   +     + +   +  + + I    D  +AI  D   
Sbjct: 56  VAEGDGFEDDPDAYLEDNVFFVPEDARWDKIAAAAHKPEIGTVI---DDAMRAIEADNKK 112

Query: 121 SSTIARLEKAG------LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              +     A       +L  +   F+ +++        V+   YE+ I +F  +  +G 
Sbjct: 113 LKNVLPKNYASPDLDKRVLGDVVDLFTNMDMGETEGNRDVLGRTYEYCIAQFAEKEGKGG 172

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V+   ++L           P     +YD  CG+GG    +   +    +H 
Sbjct: 173 GEFYTPSSIVNTLVSIL----------KPYSNCRVYDCCCGSGGMFVQSAKFIQ---AHS 219

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE  P+T  + +  + IR L++D             T + DL    +  +
Sbjct: 220 GNRGSISIYGQEANPDTWKMAIMNLTIRGLDAD------LGAYHADTFTNDLHPTLKADF 273

Query: 295 CLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            L+NPPF    W +DK  D V          R+  G+P  S+ +  ++ H+ +   L PN
Sbjct: 274 ILANPPFNYNPWGQDKLMDDV----------RWKYGIPPASNANFAWIQHMIH--HLAPN 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  +  +VL++  L       GE EIR+ ++E+DLIE I+A+P  LF+   I   LW +S
Sbjct: 322 G--KIGLVLANGAL--SSQSGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFIS 377

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             K ++++GK   I+A  +   +    +K R   ++  +++ + + + +NG
Sbjct: 378 --KGKKQKGKTVFIDARKMGHMVD---RKHRDFTEEDIQKLANTFEAFQNG 423


>gi|312865348|ref|ZP_07725576.1| type I restriction-modification system, M subunit [Streptococcus
           downei F0415]
 gi|311099459|gb|EFQ57675.1| type I restriction-modification system, M subunit [Streptococcus
           downei F0415]
          Length = 533

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 149/321 (46%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      AL         +LYDPT
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------ALMGREDKQGFSLYDPT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +   GQEL   T  +    M++  +  + ++   
Sbjct: 229 MGSGSLLLNAKKY------SHK-PNTVAYFGQELNTSTFNLARMNMILHGVPIENQK--- 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             +    TL +D  T +   F   L NPP+  KW  D   ++    +     FG   PK 
Sbjct: 279 --LHNADTLDEDWPTQEPTNFDAVLMNPPYSAKWSADAGFLQ----DPRFSPFGKLAPK- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+     GG  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYFHLK---QDGGVMAIVLPHGVLFRGNA---EGAIRKHLLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   K + +   V  I+A+  +T    +GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIIL---KKDRQERDVYFIDASKEFT----KGKNQNIMEDSHLEK 438

Query: 452 ILDIYVSRENG-KFSRMLDYR 471
           IL+ Y  R++  KF+ +  + 
Sbjct: 439 ILETYRKRKDSDKFAHLASFE 459


>gi|227517373|ref|ZP_03947422.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227075243|gb|EEI13206.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
          Length = 529

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LATEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|257417159|ref|ZP_05594153.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis AR01/DG]
 gi|257158987|gb|EEU88947.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis ARO1/DG]
          Length = 529

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LATEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|283796923|ref|ZP_06346076.1| type I restriction-modification system, M subunit [Clostridium sp.
           M62/1]
 gi|291075333|gb|EFE12697.1| type I restriction-modification system, M subunit [Clostridium sp.
           M62/1]
          Length = 522

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 154/340 (45%), Gaps = 50/340 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD----V 183
           +++ ++ KI  +   I    D     V+ N YE+LI +F +   + A +F TP      +
Sbjct: 152 DRSAVMAKIIASLDEINFGVDDTKIDVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELL 211

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             LA   L D  DA             DPTCG+G  L    N+ A+  +++         
Sbjct: 212 CRLACLGLTDVKDAA------------DPTCGSGSLLLRLKNY-ANVRNYY--------- 249

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+ +    M++R +   P R+   NI  G TL  D F   +F   ++NPP+  
Sbjct: 250 GQELTSTTYNLARMNMILRGV---PYRNF--NIYNGDTLEHDYFGDMKFRVQVANPPYSA 304

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W  D   +E E  N E G+  P     S     F+ H+   ++      GRA ++L   
Sbjct: 305 NWSADMHFMEDERFN-EYGKLAPK----SKADFAFVQHMVYHMD----EDGRAVVLLPHG 355

Query: 364 PLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            LF G A   E  IR+ L++  ++++A++ LP +LFF T I   + +L  R+       +
Sbjct: 356 VLFRGAA---EEVIRKHLIQKLNVLDAVIGLPANLFFGTGIPVCVLVLK-RERNGNSDNI 411

Query: 423 QLINATDLWTSIRNEGKKR-----RIINDDQRRQILDIYV 457
             I+A+  + + +N+   R     +I+   +RRQ +D Y 
Sbjct: 412 LFIDASSDFEAGKNQNILRECDIDKIVETYERRQDVDKYA 451


>gi|229547563|ref|ZP_04436288.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|229307336|gb|EEN73323.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
          Length = 529

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNRD-VLFIDASKEFTKGKNQNK----LATEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|215486218|ref|YP_002328649.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215264290|emb|CAS08643.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 812

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 63/352 (17%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATAL 190
           L K+   F G++L  + V  D ++ + YE+L+R F +E  +    F TP +V   LA  +
Sbjct: 115 LSKLVGIFEGLDLSSNRVEGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 174

Query: 191 LLDPD---DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            + PD   DA          T+YDPTCG+G  L   +N  A  G        L   GQE+
Sbjct: 175 GITPDTPRDA----------TVYDPTCGSGSLLL-KVNDEARRG--------LSIFGQEM 215

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG 302
           +  T A+    M++         + +  I QG+TLS   +       K F + ++NPPF 
Sbjct: 216 DNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLKAFDFAVANPPFS 268

Query: 303 KK-WEK----DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            K W       KD  E         RFG G+P   +G   FL+H+   L+      G+ A
Sbjct: 269 NKNWTNGLTPKKDPFE---------RFGWGIPPEKNGDYAFLLHIIKSLK----STGKGA 315

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E+ IR  L++   I+ ++ LP +LF+ T I   + ++       
Sbjct: 316 VILPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVIDKEHAHS 372

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
           R+G + +I+A+        +G K R+ + D  R I+D++   R    +SRM+
Sbjct: 373 RKG-IFMIDAS---RGFIKDGNKNRLRSQDIHR-IVDVFNHQRTVPGYSRMV 419


>gi|295132749|ref|YP_003583425.1| type I restriction-modification system, M subunit [Zunongwangia
           profunda SM-A87]
 gi|294980764|gb|ADF51229.1| type I restriction-modification system, M subunit [Zunongwangia
           profunda SM-A87]
          Length = 531

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 47/363 (12%)

Query: 109 DNAKAIFEDFDF-SSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D+   +FED D  SS + R  KA   L+ KI  + + I+   +     V+ + YE+LI +
Sbjct: 144 DDFVRLFEDLDLTSSKLGRTVKAKNELIAKILAHLNQIDFQLENAESDVLGDAYEYLIGQ 203

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     + A +F TP+ V  +   ++              I+++YDPTCG+G  L     
Sbjct: 204 FAENAGKKAGEFYTPQQVSTILAKIV--------TSRKKRIKSVYDPTCGSGSLLLRVAK 255

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSK 284
            V D G           +GQEL   T+ +    M++  +        SK +I+Q  TL +
Sbjct: 256 EVEDVGYF---------YGQELNRTTYNLARMNMILHDVH------FSKFDIKQEDTLEE 300

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +    ++NPPF  KW   K     + +  + G+  P     S     F+ H+ +
Sbjct: 301 PQHLDVQAEAIVANPPFSAKWSA-KGVFSSDDRFSQYGKLAPK----SKADFAFVQHMIH 355

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
            L    +  G  A VL    LF G A   E  IR++L+E+ + I+A++ LP ++FF T I
Sbjct: 356 HL----DESGIMATVLPHGVLFRGAA---EGHIRKYLIEDRNYIDAVIGLPANIFFGTGI 408

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
            T + ++  +K  E    V  I+A+        +GK   ++  +   +I+D Y  R E  
Sbjct: 409 PTCILVI--KKCREIDDDVLFIDAS---KGFEKQGKDNVLL-PEHIEKIVDTYTERKELD 462

Query: 463 KFS 465
           KFS
Sbjct: 463 KFS 465


>gi|256854686|ref|ZP_05560050.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis T8]
 gi|256710246|gb|EEU25290.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis T8]
 gi|315030629|gb|EFT42561.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4000]
          Length = 529

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LATEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|88604024|ref|YP_504202.1| N-6 DNA methylase [Methanospirillum hungatei JF-1]
 gi|88189486|gb|ABD42483.1| N-6 DNA methylase [Methanospirillum hungatei JF-1]
          Length = 532

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 144/318 (45%), Gaps = 54/318 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +  F S   +    F TPR VV    A++          SP   R +YDP 
Sbjct: 174 IIGRVYEYFLSEFASAEGKNGGQFYTPRCVVQTLVAMI----------SPFKGR-VYDPC 222

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V   G   +I  I + +GQE  P T  +    + IR ++ D      
Sbjct: 223 CGSGGMFVQSEKFVEAHGG--RIGDISI-YGQESNPTTWKLAKMNLAIRGIDHD------ 273

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDKDAVEKEHKNGELGRFGPGLPK 330
              +   +  +DL    +  Y L+NPPF  K W  E  KD V          R+  G+P 
Sbjct: 274 LGAEHADSFRRDLHATLKADYILANPPFNMKDWGGENLKDDV----------RWRYGIPP 323

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  ++ H  + L    +  G A  VL++  + + +  SGE EIR+ LLE DL++ +
Sbjct: 324 TGNANYAWIQHFIHHL----SPSGIAGFVLANGSMSSNQ--SGEGEIRKNLLEADLVDCM 377

Query: 391 VALPTDLFFRTNIATYLWIL----SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  LF+ T I   LW +    SN +  +RRG+V  I+A           +K  ++ D
Sbjct: 378 VALPGQLFYSTQIPACLWFVARNRSNGRFRDRRGEVLFIDA-----------RKMGVMRD 426

Query: 447 DQRRQILDIYVSRENGKF 464
              R++ D  + R  G +
Sbjct: 427 RTHRELTDEDIERIAGTY 444


>gi|293189231|ref|ZP_06607954.1| type I restriction-modification system, M subunit [Actinomyces
           odontolyticus F0309]
 gi|292821694|gb|EFF80630.1| type I restriction-modification system, M subunit [Actinomyces
           odontolyticus F0309]
          Length = 526

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 194/478 (40%), Gaps = 74/478 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGG--- 64
           A L   IW+ A DL G     DF   +L F   R +   L    +A  RE  +A GG   
Sbjct: 8   AELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTPE 67

Query: 65  ----------SNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE---SYIASF 107
                     SN D E+     VK  G+ F   S+   +      +  NL    SY   F
Sbjct: 68  EAAAFDYATLSNEDAEAARDGIVKEKGF-FIRPSDLFGNVRAQAASDENLNETLSYAFRF 126

Query: 108 SDNA----------KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            +N+          + +F+D D +ST       ++   L KI      + L         
Sbjct: 127 IENSARGSGSESDLRGLFDDVDVNSTKLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQIDA 186

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP++V  +   L LD            +  +YDP  
Sbjct: 187 FGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALD--------GRSDVTRVYDPCA 238

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +    S           GQE+   T+ +C   M +  +        + 
Sbjct: 239 GSGSLLLKFAKLLGPSSSRQYF-------GQEINLTTYNLCRINMFLHDVNFS-----NF 286

Query: 275 NIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +I  G TL++   +  + F   +SNPP+  KW  KD  A+  + +    G   P     S
Sbjct: 287 DIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVGKDDIALINDPRFAPAGVLAPK----S 342

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E +IRR+L+EN+ + A++ 
Sbjct: 343 KADLAFTMHMLHWLA----EDGTAAIVEFPGVLYRGAA---EGKIRRYLVENNFVHAVIQ 395

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LP DLFF T IAT + +L   + +     V  ++A+        EG K R+  ++Q+R
Sbjct: 396 LPPDLFFGTTIATCIIVLKKARPDH---SVLFVDAS---AECVREGNKNRLTAENQQR 447


>gi|307260748|ref|ZP_07542437.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869587|gb|EFN01375.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 516

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 205/481 (42%), Gaps = 73/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYAAWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI L  E  +K  GY  Y +  +  + + + ++  NL + +                 
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFE-NVVKNAHSNPNLNTELKEIFTAIESSATGYDSE 125

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           ++ K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE 
Sbjct: 126 NDIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEF 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L 
Sbjct: 183 LISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLL 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D    H I       GQE+   T+ +    M +  +  D       +I  G+T
Sbjct: 235 QAKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGNT 283

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F
Sbjct: 284 LLKPQFGDSKPFDAIVSNPPYSVKWIGDGDPTLINDE-----RFAPAGVLAPKSKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H+ + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 339 ILHVLSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  
Sbjct: 392 FGTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSD 444

Query: 459 R 459
           +
Sbjct: 445 K 445


>gi|296453353|ref|YP_003660496.1| type I restriction-modification system subunit M [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182784|gb|ADG99665.1| type I restriction-modification system, M subunit [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 520

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 201/490 (41%), Gaps = 68/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           MT      A L   IW  A  L G     DF + +L F   R +   +    +    +  
Sbjct: 1   MTNSGAQRAELHKAIWNIANVLRGSVDGWDFKQYVLGFLFYRFISEDITSYLNGYEHQAG 60

Query: 60  -LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------------NLE 101
            + F  + +D  +  +V          + L +    N RN                 N+E
Sbjct: 61  DVDFDYAKLDDATAEQVRKSMVEEKGYFILPSDLFANVRNRADGDENLNETLQRVFKNIE 120

Query: 102 -SYIASFSDNA-KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM- 155
            S I S S+++ + +F+D D +S       +E+   L K+      ++L  ++  D  + 
Sbjct: 121 GSAIGSRSESSLRGLFDDLDLNSRKLGDTVVERNAKLVKVLNAIGNLDLGTESFADNTID 180

Query: 156 --SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + +   +   +F TP++V  L T +               +  +YDP 
Sbjct: 181 AFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIA--------THGKSEVNKVYDPA 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  ++  +                GQE    T+ +C   M +  +  D      
Sbjct: 233 CGSGSLLLQSIKVLGKDKVRQGF------FGQEKNLTTYNLCRINMFLHDVNYD-----H 281

Query: 274 KNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NI  G TL +   +  + F   +SNPP+  KWE D +            RF P   L  
Sbjct: 282 FNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPTLINDP-----RFSPAGVLAP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L       G AAIV     L+ G     E +IR++LLE + I+A+
Sbjct: 337 KSKADLAFTMHMLSWLA----ADGTAAIVEFPGVLYRG---GKEQKIRKYLLEKNFIDAV 389

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T+IAT + +L   K ++    V  I+A++ +  + N+ +    ++ D   
Sbjct: 390 IQLPPNLFFGTSIATCIIVLRKSKNDD---SVLFIDASERFVHVGNQNQ----LSPDDIA 442

Query: 451 QILDIYVSRE 460
            I+D YV RE
Sbjct: 443 AIMDAYVKRE 452


>gi|268610089|ref|ZP_06143816.1| type I restriction-modification system methyltransferase subunit
           like protein [Ruminococcus flavefaciens FD-1]
          Length = 523

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 190/419 (45%), Gaps = 58/419 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             S+   +WK+A+ L G  +  ++  V+L    L+      E  R  + EKY   G   +
Sbjct: 10  VVSMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKY---GDKFV 66

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--ASFSDNA-----KAIFEDFDF 120
           D  +F       FY  +E   S +     ++++   I  A F+        K    D  +
Sbjct: 67  DNIAFY-TKDNVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALPDNYY 125

Query: 121 SSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           S       K A LL +I K      ++ D   + ++  IYE+ + +F     +G  +F T
Sbjct: 126 SRLHIDTSKLASLLDEIDK------INTDDSENDIIGRIYEYFLGKFALAEGKGKGEFYT 179

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPP 238
           P+ +V+L  A L++P D +          LYDP CG+GG    ++  V A  G+  K+  
Sbjct: 180 PKCIVNL-IAELIEPYDGI----------LYDPCCGSGGMFVQSIKFVEAHSGNKKKVSI 228

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCL 296
               +GQE    T  +    + IR         +S N+ +   +T + D     +  Y +
Sbjct: 229 ----YGQEYTNTTFKLAKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADYIM 276

Query: 297 SNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF +K W  + + V+    NG        +P  S+ +  +++++ +KL    +  G 
Sbjct: 277 ANPPFNQKEWRAENELVDDPRWNGY------EVPPTSNANYGWILNIVSKL----SQNGV 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           A  +L++  L +      E +IR+ L++N+L+EAI+ LP  LF+ T+I+  LWIL+  K
Sbjct: 327 AGFLLANGALSDD---GTELKIRKQLIDNNLVEAIIILPRSLFYTTDISVTLWILNKNK 382


>gi|253569549|ref|ZP_04846959.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841568|gb|EES69649.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 498

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 154/340 (45%), Gaps = 51/340 (15%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           G +  + ++ S   L  +  P  +M + YE L+++F  +    A +F TPR VV L   +
Sbjct: 138 GKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGEFYTPRSVVSLLVRI 197

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQE 246
           L DP        PG   T+YDP CG+GG L +A+ H+      CGS           GQE
Sbjct: 198 L-DP-------KPG--ETVYDPACGSGGMLIEAVQHMNHSSLCCGS---------IFGQE 238

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGK--RFHYCLSNPPFG 302
                 A+    + +             NI QG TL   K L  G+  +F   ++NPPF 
Sbjct: 239 KNVVNSAIAKMNLFLHGASD-------FNIMQGDTLRSPKILQNGEIAKFDCVIANPPFS 291

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +KW         E  + + GR   G P  S G   ++ H+   +    +G GR A+V+ 
Sbjct: 292 LEKWGS------VEWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASGNGRMAVVMP 342

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G     E  IR  L+++DLIEA+V L   LF+ T ++    IL   K      +
Sbjct: 343 QGVLFRGNE---EGRIREKLVKSDLIEAVVTLGDKLFYGTGLSPCFLILRRLKPAAHSAR 399

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           V +I+ T + T  R     + I++ +   ++ ++Y++ E+
Sbjct: 400 VLMIDGTKILTVKR----AQNILSPENVDRLYELYINYED 435


>gi|315148961|gb|EFT92977.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4244]
          Length = 529

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNRD-VLFIDASKEFTKGKNQNK----LATEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|121609950|ref|YP_997757.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121554590|gb|ABM58739.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 520

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 40/336 (11%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATA 189
           +L ++    SGI L+ +    R ++  +YE+ + +F G+E   G E F TP  VV     
Sbjct: 134 MLGELIDLISGITLNQEGHASRDILGRVYEYFLGQFAGAEGKRGGE-FYTPGSVVRTLVE 192

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L           P   R +YDP CG+GG    +   V + G   +I  I + +GQE   
Sbjct: 193 ML----------EPYQGR-IYDPCCGSGGMFVQSEKFVQEHGG--RIGDIAI-YGQESNH 238

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD 308
            T  +    + +R ++SD R +      +GS   KD     +  Y L+NPPF    W  D
Sbjct: 239 VTWRLAKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLKADYILANPPFNISDWGGD 292

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +          E  R+  G+P + + +  +L H+ +   L PNG   A +VL++  + + 
Sbjct: 293 RLR--------EDVRWKFGVPPVGNANYAWLQHIVH--HLAPNG--TAGVVLANGSMSSS 340

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           +  SGE +IRR ++E D+++ +VALP  LF+ T I   LW L+  K+  R GK  L +  
Sbjct: 341 Q--SGEGDIRREMVEQDIVDCMVALPGQLFYSTQIPACLWFLARDKSNGRAGKAYLRDRR 398

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                I  + +K  ++ D  RR++ D  V R  G +
Sbjct: 399 KEVLFI--DARKLGVLVDRTRRELTDADVRRIAGTY 432


>gi|50914977|ref|YP_060949.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|50904051|gb|AAT87766.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
          Length = 526

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 179/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    FSD  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFSDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLGNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           D   ++ILD Y SR+N  KFS +  +
Sbjct: 430 DSHIKKILDAYKSRDNSDKFSYLASF 455


>gi|315648620|ref|ZP_07901717.1| type I restriction-modification system, M subunit [Paenibacillus
           vortex V453]
 gi|315275999|gb|EFU39347.1| type I restriction-modification system, M subunit [Paenibacillus
           vortex V453]
          Length = 530

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 152/313 (48%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           ++ + YE LI +F SE  + A +F TP +V  +    A +   D  LF        +++D
Sbjct: 172 IIGDAYEFLISQFASEAGKKAGEFYTPHEVSDMMARIATIGQEDKKLF--------SVFD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++    +H   P  +  HGQEL   T+ +    +++  ++ +  R 
Sbjct: 224 PTMGSGSLMLNVRNYL----NH---PDNVKYHGQELNTTTYNLAKMNLILHGVDKEDMR- 275

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               ++ G TL+KD  T +   F   L NPP+   W  D   ++    +    R+G   P
Sbjct: 276 ----LRNGDTLNKDWPTDEPYTFDSVLMNPPYSANWSSDDTFLD----DSRFNRYGKLAP 327

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A
Sbjct: 328 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYA 379

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LF+ T+I T + IL  NR T +    V  I+A+  +T ++N+      ++++ 
Sbjct: 380 VIGMPANLFYGTSIPTTVIILKKNRTTRD----VLFIDASHEFTKVKNQNN----LSEEH 431

Query: 449 RRQILDIYVSREN 461
             +I++ Y  REN
Sbjct: 432 IDKIVETYKRREN 444


>gi|311747174|ref|ZP_07720959.1| type I restriction-modification system, M subunit [Algoriphagus sp.
           PR1]
 gi|126578883|gb|EAZ83047.1| type I restriction-modification system, M subunit [Algoriphagus sp.
           PR1]
          Length = 802

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 152/322 (47%), Gaps = 40/322 (12%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+  F +E  +    F TP +V  +   ++      + ++      T+YD
Sbjct: 135 DDILGDAYEYLMMHFATESGKSKGQFYTPAEVSRIMAMII-----GISQDQTNANTTVYD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L          GS  K    L  +GQE +  T A+    M++    S     
Sbjct: 190 PTCGSGSLLLR-------IGSAAKTKVTL--YGQEKDSATSALSRMNMILHDYPS----- 235

Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               I+QG+TL+  LF      K+F Y ++NPPF  K   +  ++  +  N     FG  
Sbjct: 236 --AEIKQGNTLANPLFLEDGKMKQFDYVVANPPFSDKRWSNGLSIPNDEPNNRFAGFG-- 291

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   +L+H+   L+    G    AI+L    LF G A   E+EIR  L++   I
Sbjct: 292 VPPSKNGDFAYLLHIVRSLKRNAKG----AIILPHGVLFRGNA---EAEIRTNLIKKGYI 344

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LF+ T I   + IL +++    R  V +++A+  +     +G K R+   D
Sbjct: 345 KGIIGLPANLFYGTGIPACI-ILIDKENALNRKAVFMVDASKGYIK---DGNKNRLREQD 400

Query: 448 QRRQILDIYVSR-ENGKFSRML 468
             R I D++ ++ E   +SRM+
Sbjct: 401 -IRNITDVFNAQFEVPGYSRMV 421


>gi|52079176|ref|YP_077967.1| Type I restriction modification system protein HsdMI [Bacillus
           licheniformis ATCC 14580]
 gi|52784543|ref|YP_090372.1| hypothetical protein BLi00744 [Bacillus licheniformis ATCC 14580]
 gi|52002387|gb|AAU22329.1| Type I restriction modification system protein HsdMI [Bacillus
           licheniformis ATCC 14580]
 gi|52347045|gb|AAU39679.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 530

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           V+ + YE+LI +F SE  + A +F TP  V  +    A +   D  LF        +++D
Sbjct: 172 VIGDAYEYLISQFASEAGKKAGEFYTPHQVSDMMARIAAIGQEDKKLF--------SVFD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++         P  +  HGQEL   T  +    +++  +  +  R 
Sbjct: 224 PTMGSGSLMLNIRNYI-------NYPDSVKYHGQELNTTTFNLAKMNLILHGVNKEDMR- 275

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   P
Sbjct: 276 ----LRNGDTLNKDWPTDEPYTFDAVLMNPPYSAKWSADTTFID----DSRFNRYGKLAP 327

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A
Sbjct: 328 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDA 379

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LFF T+I T + IL  NR T +    V  I+A+  +   +N+ K    ++ + 
Sbjct: 380 VIGMPANLFFGTSIPTTVIILKKNRSTRD----VLFIDASKEFIKGKNQNK----LSKEN 431

Query: 449 RRQILDIYVSREN 461
             +I++ Y  RE+
Sbjct: 432 IDKIVETYKKRED 444


>gi|84386436|ref|ZP_00989464.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus
           12B01]
 gi|84378860|gb|EAP95715.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus
           12B01]
          Length = 521

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 207/486 (42%), Gaps = 81/486 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L N IWK A ++ G     DF + +L     R +        S     Y+  G S+I+  
Sbjct: 10  LHNQIWKIANEVRGSVDGWDFKQYVLGALFYRFI--------SENFTNYIEGGDSSINYA 61

Query: 71  SF--------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FS------- 108
            F              +K  GY  Y  SE   + +   +  +NL + +A  FS       
Sbjct: 62  GFDDEAPQIELIKDDAIKTKGYFIY-PSELFCNVVKKASKNDNLNTDLAKVFSAIESSAN 120

Query: 109 -----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNI 158
                ++ K +F DFD +S       +EK   L+ + K    ++L    D   D +  + 
Sbjct: 121 GYASEEDIKGLFADFDTTSNRLGNTVIEKNTRLFAVLKGVEDLKLGDFQDNQID-LFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI ++ +   +   +F TP+ V +L   L +   D + K        +YDP  G+G 
Sbjct: 180 YEFLISKYAANAGKSGGEFFTPQTVSNLIAKLAMHKQDKVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A  H      +H I       GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKHF----DNHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL+   F  ++ F   +SNPP+  KW    D      +     RF P   L   S   
Sbjct: 281 GNTLTNPHFGDEKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGILAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L  P    GRAAIV      +  R+G+ E +IR++L++N+ +E +++L  
Sbjct: 336 FAFVLHALNYLS-PK---GRAAIVCFPGIFY--RSGA-EKKIRKYLVDNNYVETVISLAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K E     VQ I+A+       N+     ++  +   +I++ 
Sbjct: 389 NLFYGTSIAVNILVLSKSKKE---NTVQFIDAS--GEGFFNKVGNNNVLTSEHIDKIMET 443

Query: 456 YVSREN 461
           + S++N
Sbjct: 444 FDSKQN 449


>gi|188492079|ref|ZP_02999349.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|188487278|gb|EDU62381.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|322616182|gb|EFY13098.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620877|gb|EFY17736.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623032|gb|EFY19874.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628322|gb|EFY25110.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634727|gb|EFY31458.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638706|gb|EFY35401.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322646506|gb|EFY43015.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649129|gb|EFY45570.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654495|gb|EFY50817.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660786|gb|EFY57019.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665112|gb|EFY61300.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667856|gb|EFY64016.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671732|gb|EFY67853.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677222|gb|EFY73286.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680115|gb|EFY76154.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685456|gb|EFY81452.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193665|gb|EFZ78869.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199972|gb|EFZ85060.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204703|gb|EFZ89700.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205731|gb|EFZ90694.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213701|gb|EFZ98484.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216764|gb|EGA01488.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223409|gb|EGA07739.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323231920|gb|EGA16027.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234447|gb|EGA18534.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323237898|gb|EGA21957.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243501|gb|EGA27520.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249498|gb|EGA33412.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254258|gb|EGA38076.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255083|gb|EGA38869.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261255|gb|EGA44843.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266620|gb|EGA50107.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271346|gb|EGA54772.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 507

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H      L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHDSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFISHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  ++ +  +
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREYKA----GKNQNQLSAENIQ 427

Query: 451 QILDIYVSREN 461
           +I++ Y   +N
Sbjct: 428 KIVNTYREGDN 438


>gi|325281058|ref|YP_004253600.1| type I restriction-modification system, M subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324312867|gb|ADY33420.1| type I restriction-modification system, M subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 518

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 136/545 (24%), Positives = 222/545 (40%), Gaps = 109/545 (20%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-- 72
           IWK A ++ G     DF + +L  TL  R         S     Y+  G  +ID  S   
Sbjct: 14  IWKIANEVRGAVDGWDFKQFVLG-TLFYRF-------ISENFTDYIEGGDDSIDYASLPD 65

Query: 73  -----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------------ 109
                      VK  GY  Y +  +  + + + NT  NL + + +  D            
Sbjct: 66  SVITPEIKDDAVKTKGYFIYPSQLFG-NVVKTANTNPNLNTDLKAIFDSIESSANGYASE 124

Query: 110 -NAKAIFEDFDFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSNI 158
            N K +F DFD +ST  RL      K   L  + K     NF   E H   +      + 
Sbjct: 125 KNIKGLFADFDTTST--RLGNTVENKNSRLAAVLKGVEGLNFGNFEEHEIDL----FGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP++V  L + L      A+ K++   +  +YDP  G+G 
Sbjct: 179 YEFLINNYAANAGKSGGEFFTPQNVSKLISQL------AMHKQA--TVNKIYDPAAGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     D              GQE+   T+ +    M +  +  D       NI  
Sbjct: 231 LLLQAKKQFEDRIIEDGF------FGQEINHTTYNLARMNMFLHNINYDKF-----NIAL 279

Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL+   F   K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GNTLTDPQFGDDKPFDAIVSNPPYSVNWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++++ IE I++LP+
Sbjct: 335 FAFVLHSLSYL----SSRGRAAIVCFPGIFYRGGA---EQKIRKYLVDSNFIETIISLPS 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K +    K+Q I+A+    S   +     ++ +    +I+D 
Sbjct: 388 NLFYGTSIAVNILVLSKHKPDT---KIQFIDAS--GESFFTKETNNNVLENKHIDRIIDF 442

Query: 456 YVSRENGKF-SRMLDYRTF----------GYRRIKVLRPL--------RMSFILDKTGLA 496
           +  +E+  + ++ +DY++            Y  +K  RP         R+  I+++    
Sbjct: 443 FDKKEDVDYIAKSVDYKSITENDYNLSVSSYIEVKDTRPKTDIKELNERIRRIVERENEL 502

Query: 497 RLEAD 501
           R+E D
Sbjct: 503 RIEID 507


>gi|229105723|ref|ZP_04236352.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-28]
 gi|228677612|gb|EEL31860.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-28]
          Length = 497

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 164/351 (46%), Gaps = 45/351 (12%)

Query: 114 IFEDFDF-SSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F+D D  SS + R    ++ L+ K+  N + I    D V   ++ + YE++I +F +  
Sbjct: 120 LFDDMDLTSSKLGRTVESRSKLIAKVIINIAEIPFLQDDVEIDILGDAYEYMISQFAANA 179

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  +   ++              IR++YD TCG+G  L          
Sbjct: 180 GKKAGEFYTPQQVSKVLAKIV--------TAGKSEIRSVYDGTCGSGSLLL-------RV 224

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G   K+      +GQE    T+ +    ML+  +   P +    +I+   TL +     +
Sbjct: 225 GKEAKVYKY---YGQEKVSTTYNLARMNMLLHDI---PYQRF--DIKNADTLEEPQHLDE 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPP+  KW  D D  + + +     +  P     S     F+ H  ++L    
Sbjct: 277 RFEAIVANPPYSAKWSAD-DKFKDDERFSAYSKLAPK----SKADFAFIQHFIHQL---- 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWI 409
           +G G  A+VL    LF G A   E  IR++L+ E + ++A++ LP ++F+ T+I T   I
Sbjct: 328 DGNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPT--CI 382

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L  +K  +    V  I+A++ +     +GK +  ++D+   +I+  Y++RE
Sbjct: 383 LVFKKCRKHDEHVVFIDASNEF----EKGKNQNHLSDEHVEKIVSTYLNRE 429


>gi|153807713|ref|ZP_01960381.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185]
 gi|160886165|ref|ZP_02067168.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483]
 gi|160889103|ref|ZP_02070106.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492]
 gi|149129322|gb|EDM20536.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185]
 gi|156108050|gb|EDO09795.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483]
 gi|156861570|gb|EDO55001.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492]
          Length = 497

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 190/464 (40%), Gaps = 87/464 (18%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E TG A  L NF+++    + G     +F   I P    +R+    +       E  ++ 
Sbjct: 9   ELTG-AQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYD---EETEEALISS 64

Query: 63  GG-----SNIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYIASF 107
           GG     S  +   FV   G  +    E +   LG+              + L   ++ F
Sbjct: 65  GGDKEYASLPEQHRFVIPDGCHWQEVRERT-ENLGAAIVGAMRQIEIANPDTLYGVLSMF 123

Query: 108 SDNA---KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           S      KAI  D      I  L K  L  K               P  +M + YE L++
Sbjct: 124 SSQKWTNKAILNDSKIRDLIEHLSKRKLGNK-------------DYPADLMGDAYEILLK 170

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  +    A +F TPR VV L   +L DP        PG   T+YDP CG+GG L +A+
Sbjct: 171 KFADDSKAQAGEFYTPRSVVRLLVHIL-DP-------QPG--ETVYDPACGSGGMLIEAI 220

Query: 225 NHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSK 274
            ++ D    CGS           GQE      A+    + +        ++ D  RD   
Sbjct: 221 RYMHDDSLCCGS---------IFGQEKNVVNAAIAKMNLFLHGASDFNVMQGDTLRD--P 269

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I QG  ++K       F   ++NPPF  + W   + + +K  +N        G P  S 
Sbjct: 270 KILQGGNIAK-------FDCVIANPPFSLENWGATEWSSDKYKRNIY------GTPSDSC 316

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G   ++ H+   +    +G GR A+V+    LF G   + E+EIR+ L+E+DLIEA+V L
Sbjct: 317 GDYAWIQHMICSMS---SGKGRMAVVMPQGILFRG---NQEAEIRKQLVESDLIEAVVTL 370

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
              LF+ T ++    I+   K     G++ +I+ + + T  R +
Sbjct: 371 GDKLFYGTGLSPCFLIIRRMKQAHHSGRILMIDGSKILTQKRAQ 414


>gi|332292955|ref|YP_004431564.1| type I restriction-modification system, M subunit [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171041|gb|AEE20296.1| type I restriction-modification system, M subunit [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 531

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 160/349 (45%), Gaps = 44/349 (12%)

Query: 114 IFEDFDF-SSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +FED D  SS + + E  K  L+ K+  +   I+         ++ + YE+LI +F S  
Sbjct: 138 LFEDLDLTSSKLGKSENDKNELIVKVLSHLDEIDFDIANTESDLLGDAYEYLIGQFASGA 197

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V ++   L+    D L        +++YDPTCG+G  L      V + 
Sbjct: 198 GKKAGEFYTPQQVSNILAQLVTVGKDRL--------KSVYDPTCGSGSLLLRVAKQVKEV 249

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +          +GQE+ P T+ +C   M++  +    R D    I+   TL +     +
Sbjct: 250 SAF---------YGQEMNPTTYNLCRMNMIMHDVHY-KRFD----IKNEDTLERPQHLDQ 295

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPPF  KW         + +    G+  P     S     F+ H+ ++L    
Sbjct: 296 RFEAIVANPPFSAKWSASP-LFMSDDRFANYGKLAPS----SKADFAFVQHMVHQLA--- 347

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWI 409
              G  A+VL    LF G A   E  IR++L+++ + ++A++ LP ++F+ T+I T + +
Sbjct: 348 -DNGTMAVVLPHGVLFRGGA---EGHIRKYLIKDRNYLDAVIGLPANIFYGTSIPTCILV 403

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           L  +K    +  +  I+ +  +  ++ +   R    ++   +++D Y S
Sbjct: 404 L--KKERVHKDNILFIDGSQHFEKVKTQNYLR----EEDITKLIDTYKS 446


>gi|315169213|gb|EFU13230.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1341]
 gi|315171542|gb|EFU15559.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1342]
          Length = 529

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LAPEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|300837084|ref|YP_003754138.1| type I restriction-modification system M subunit [Klebsiella
           pneumoniae]
 gi|299474888|gb|ADJ18712.1| type I restriction-modification system M subunit [Klebsiella
           pneumoniae]
          Length = 507

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGQDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H      L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHDSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFISHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  ++++  +
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKA----GKNQNQLSEENIK 427

Query: 451 QILDIYVSREN 461
           +I+  Y   +N
Sbjct: 428 KIVKTYRDGDN 438


>gi|257078398|ref|ZP_05572759.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis JH1]
 gi|294780143|ref|ZP_06745515.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis PC1.1]
 gi|256986428|gb|EEU73730.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis JH1]
 gi|294452686|gb|EFG21116.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis PC1.1]
          Length = 529

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNRD-VLFIDASKEFTKGKNQNK----LAPEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|238918945|ref|YP_002932459.1| hypothetical protein NT01EI_1012 [Edwardsiella ictaluri 93-146]
 gi|238868513|gb|ACR68224.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 539

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 188/442 (42%), Gaps = 53/442 (11%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E    A R++ +A G    +D++ F 
Sbjct: 22  LWDTANQLRGSVESSEYKHVVLSLVFLKFITDKFE----AKRKQLMANGQEAFVDMDVFY 77

Query: 74  KVAGYSFYNTS---EYSLSTLGSTNTRNNLESYIASFSDNAKAI---FEDFDFSSTIARL 127
           +     F   +    Y  +     +    ++S +A+   +  A+     D  FS     +
Sbjct: 78  QQDNVFFLPEAARWSYVKARAKQDDIAVIIDSALATIEKSNSALTGALPDNYFSRQGLEV 137

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +K   L    +N   +        + ++  +YE+ + RF +   +G  +F TP+ VV L 
Sbjct: 138 KKLASLIDTIENIDTLASECQLSEEDLVGRVYEYFLGRFAASEGKGGGEFYTPKSVVTL- 196

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            A +L+P +            +YDP CG+GG    ++  V    SH      +  +GQEL
Sbjct: 197 LAEMLEPYEG----------KIYDPCCGSGGMFVQSLKFVE---SHQGKSKDIAIYGQEL 243

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE 306
              T+ +    + IR L  +         +   T   D     +  + ++NPPF  K+W 
Sbjct: 244 TTTTYKLAKMNLAIRGLIGNLGE------RPADTFFADQHPDLKADFIMANPPFNLKEWR 297

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 E E  N    RF G   P   + +  +++H+  KL +     G A  VL++  +
Sbjct: 298 S-----ESELTNDP--RFAGFRTPPTGNANYAWILHMLAKLSVD----GTAGFVLANGAM 346

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------R 418
            +    SGE EIR+ L+E+D IE ++ALP  LF+ T I   LW +S  K          R
Sbjct: 347 SSNT--SGEGEIRQKLIEDDRIECMIALPGQLFYTTQIPVCLWFISKSKQANPRYGYRAR 404

Query: 419 RGKVQLINATDLWTSIRNEGKK 440
            G+   I+A +L T +    K+
Sbjct: 405 SGETLFIDARELGTMVSRTNKE 426


>gi|256960372|ref|ZP_05564543.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis Merz96]
 gi|293384345|ref|ZP_06630230.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis R712]
 gi|293388418|ref|ZP_06632926.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis S613]
 gi|312908546|ref|ZP_07767490.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312908984|ref|ZP_07767846.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 516]
 gi|256950868|gb|EEU67500.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis Merz96]
 gi|291078337|gb|EFE15701.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis R712]
 gi|291082193|gb|EFE19156.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis S613]
 gi|310625513|gb|EFQ08796.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 512]
 gi|311290684|gb|EFQ69240.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315149120|gb|EFT93136.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0012]
          Length = 529

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----D 274

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +   +
Sbjct: 383 GMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LAPEHIDK 435

Query: 452 ILDIYVSREN 461
           I+  Y+ R++
Sbjct: 436 IVSTYIERQD 445


>gi|87309189|ref|ZP_01091326.1| putative type I restriction-modification system, M subunit
           [Blastopirellula marina DSM 3645]
 gi|87288180|gb|EAQ80077.1| putative type I restriction-modification system, M subunit
           [Blastopirellula marina DSM 3645]
          Length = 543

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 182/419 (43%), Gaps = 56/419 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-ID 68
           S    +W  A+ L G  + +++  V+L    L+ +    +  R+A+    +A G ++ +D
Sbjct: 28  SFEQTLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDRFQQRRAAL----IAEGKADYVD 83

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-----------KAIFED 117
           +  F     Y+  N      ++  ST  +   ++ IA   D+A           K    D
Sbjct: 84  MVEF-----YTMQNVFYLPENSRWSTIVKQAKQADIAVHIDSALHAVEKNNPSLKGALPD 138

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     + K   L     N S +        + ++  +YE+ + +F +   +G  +F
Sbjct: 139 NYFSRMGIDVAKLAALIDSINNLSTVADQAAESEEDIVGRVYEYFLGKFAATEGKGGGEF 198

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ VV+L  A +L+P              +YDP CG+GG    ++  +    SHH   
Sbjct: 199 YTPKCVVNL-LAEMLEPYSG----------KIYDPCCGSGGMFVQSVKFIT---SHHGNQ 244

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYC 295
             +  +GQE    T+ +    + IR         ++ N+ +    T  KD     +  Y 
Sbjct: 245 KDISIYGQEQTSTTYKLAKMNLAIR--------GIAGNLGEVPADTFFKDQHPDLKADYI 296

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF  K  +  D +  + +       G  +P   + +  +++H+ +KL    +  G 
Sbjct: 297 LANPPFNLKAWRGPDELTDDPRWS-----GYDVPPAGNANYGWILHMISKL----SENGV 347

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           A  VL++  +    + SGE  IR+ ++ENDL++ ++ALP  LF+ T I   LW L+  K
Sbjct: 348 AGFVLANGSM--STSTSGEGAIRQKIIENDLVDCMIALPGQLFYTTQIPVCLWFLTKSK 404


>gi|307256315|ref|ZP_07538098.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865141|gb|EFM97041.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 535

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 203/481 (42%), Gaps = 73/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 28  AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYAAWSDD 86

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI L  E  +K  GY  Y +  +  + + + ++  NL + +                 
Sbjct: 87  DENIKLGKEHVIKEKGYFIYPSQLFE-NVVKNAHSNPNLNTELKEIFTAIESSATGYDSE 145

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           ++ K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE 
Sbjct: 146 NDIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEF 202

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L 
Sbjct: 203 LISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLL 254

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D    H I       GQE+   T+ +    M +  +  D       +I  G T
Sbjct: 255 QAKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDT 303

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F
Sbjct: 304 LLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAF 358

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 359 ILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLF 411

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  
Sbjct: 412 FGTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSD 464

Query: 459 R 459
           +
Sbjct: 465 K 465


>gi|300813147|ref|ZP_07093523.1| type I restriction-modification system, M subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300495862|gb|EFK31008.1| type I restriction-modification system, M subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 532

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 56/371 (15%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIAR-LEK-----AGLLY 134
           N   + L+ LG  +  N LES  +SF    + +F+D+D +S  + + L+K     AG+L 
Sbjct: 104 NDGSFQLNQLG--DAFNKLESQGSSF----EGLFDDYDLYSKRLGQNLQKQTDTIAGVLK 157

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            I K      L     P   + + YE+LI +F SE  + A +F TP++V  L   L L  
Sbjct: 158 AIGK------LELVKTPGDTLGDAYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVG 211

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            D     S GM  ++YDP  G+G  L +   +V +          +  +GQE+   T  +
Sbjct: 212 KDY----SSGM--SVYDPAMGSGSLLLNFRKYVPNSSR-------ITYYGQEINTSTFNL 258

Query: 255 CVAGMLIRRLESDPRRDLS-KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDA 311
               M++  +      DL+ + ++ G TL +D        F   + NPP+  KW  DK  
Sbjct: 259 ARMNMILHHV------DLANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGF 312

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++    +    ++G  LP  S     FL+H    L+      G  AIVL    LF G A 
Sbjct: 313 LD----DPRFSKYGV-LPPKSKADYAFLLHGFYHLK----HSGAMAIVLPHGILFRGAA- 362

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E +IR+ LLE   I+A++ LP +LF+ T I T + +L   K +++   V  I+A+  +
Sbjct: 363 --EGKIRQKLLEEGAIDAVIGLPANLFYSTGIPTTIVVL---KKDKQDRSVLFIDASKEF 417

Query: 432 TSIRNEGKKRR 442
             ++ + K R+
Sbjct: 418 EKVKTQNKLRQ 428


>gi|294619473|ref|ZP_06698917.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
 gi|291594300|gb|EFF25730.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
          Length = 515

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 215/497 (43%), Gaps = 81/497 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L + IWK A D+ G     DF + +L     R         +E    +V    L+   
Sbjct: 8   AKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVNYAELSDDV 67

Query: 65  -SNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE-----SYIASFSD------NA 111
            +N   E  +K  GY  Y +  +S ++   +TN   N +     S I S ++      + 
Sbjct: 68  ITNEIKEDAIKTKGYFIYPSQMFSRIAKTANTNESLNTDLAAIFSAIESSANGYPSELDI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLI 163
           K +F DFD +S   RL     +K   L  + K   G+   E   + +   +  + YE LI
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQID--LFGDAYEFLI 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   L      A+ K++   I  +YDP  G+G  L  A
Sbjct: 184 SNYAANAGKSGGEFFTPQSVSSLIAQL------AIHKQT--TINKIYDPAAGSGSLLLQA 235

Query: 224 MN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ + G +          GQE+ P T+ +    M +  +  D        I  G
Sbjct: 236 KKQFDAHIIEDGFY----------GQEINPTTYNLARMNMFLHNINYDKFH-----IALG 280

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           +TL    +   K F   +SNPP+  KW   +D   +  E       RF P   L   S  
Sbjct: 281 NTLLDPHYGEDKPFDAIVSNPPYSVKWIGSEDPTLINDE-------RFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E I++L 
Sbjct: 334 DFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIISLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K++    K Q I+A+ +      +     I+ D+   +I+ 
Sbjct: 387 PNLFYGTSIAVNILVLSKHKSD---NKTQFIDASGI--EFYKKETNNNILTDEHIAKIMS 441

Query: 455 IYVSRENGKF-SRMLDY 470
           ++ S+E+  + ++ +DY
Sbjct: 442 MFDSKEDIDYVAKSVDY 458


>gi|299142935|ref|ZP_07036061.1| type I restriction-modification system, M subunit [Prevotella oris
           C735]
 gi|298575551|gb|EFI47431.1| type I restriction-modification system, M subunit [Prevotella oris
           C735]
          Length = 518

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 43/316 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++              +R +YDPT
Sbjct: 182 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV--------TLGHARLRNVYDPT 233

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A  G  ++I       GQE  P T+ +    ML+  ++    R   
Sbjct: 234 CGSGSLLLRA----AGIGHANEI------FGQEKNPTTYNLARMNMLLHGIKFSNFR--- 280

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W    D    +++  + GR  P   K +D
Sbjct: 281 --IENGDTLEADAFDDTQFDAVVANPPFSAEWNA-ADKFNNDYRFSKAGRLAP--RKTAD 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
            +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ 
Sbjct: 336 YA--FILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T   IL  RK  +    +  I+A+  +  I+ + K R        ++I
Sbjct: 387 LPANIFYGTSIPT--CILVFRKCRKEDDSILFIDASKDFEKIKTQNKLRP----QHIQKI 440

Query: 453 LDIYVSR-ENGKFSRM 467
           +D Y  R E  K+S +
Sbjct: 441 VDTYRDRKEIEKYSHL 456


>gi|71904274|ref|YP_281077.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS6180]
 gi|306826650|ref|ZP_07459954.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
 gi|71803369|gb|AAX72722.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS6180]
 gi|304431177|gb|EFM34182.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
          Length = 526

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 176/383 (45%), Gaps = 51/383 (13%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI  F SE  + A +F TP+ V HL T ++       +++  GM  TLY
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF----LGWEDQKGM--TLY 223

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +A  +     +       +  +GQE+   T+ +    M++  +  +   
Sbjct: 224 DPAMGSGSLLLNAKKYSNQSDT-------VSYYGQEINTSTYNLARMNMMLHGVAIE--- 273

Query: 271 DLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             ++++    TL  D  T +   F   L NPP+  KW     A      +     +G   
Sbjct: 274 --NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYGVLA 327

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+
Sbjct: 328 PK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAID 379

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + D  
Sbjct: 380 TIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMTDSH 432

Query: 449 RRQILDIYVSRENG-KFSRMLDY 470
            ++ILD Y SR+N  KFS +  +
Sbjct: 433 IKKILDAYKSRDNSDKFSYLASF 455


>gi|283778919|ref|YP_003369674.1| type I restriction-modification system, M subunit [Pirellula
           staleyi DSM 6068]
 gi|283437372|gb|ADB15814.1| type I restriction-modification system, M subunit [Pirellula
           staleyi DSM 6068]
          Length = 835

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 44/323 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++      +         T+YD
Sbjct: 170 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQII-----GIKTAKTTGSTTVYD 224

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L    +         + P  L  +GQE +  T  +     ++  + +     
Sbjct: 225 PTCGSGSLLLKVSDEA-------QTPVTL--YGQEKDAATSGLARMNTILHNMPT----- 270

Query: 272 LSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
               I+QG+TLS   F      K F Y ++NPPF  K+W    D     H      RF  
Sbjct: 271 --ALIEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDKRWSTGLDPASDPH-----ARFTL 323

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P    G   +L+H+   L+      G+ A +L    LF G A   E+EIR+ LL    
Sbjct: 324 GIPPAKQGDYAYLLHIIRSLK----STGQGACILPHGVLFRGNA---EAEIRKNLLRKGY 376

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP +LF+ T I   + ++ ++K   RR  + +I+A+   +    +G K R+   
Sbjct: 377 IKGIIGLPANLFYGTGIPACIVVI-DKKEANRRQAIFMIDAS---SGYMKDGPKNRLRAR 432

Query: 447 DQRRQILDIYVSR-ENGKFSRML 468
           D  + I+D +  + E  K+SR++
Sbjct: 433 DIHK-IVDTFNQQLEVPKYSRLV 454


>gi|295090547|emb|CBK76654.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 471

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 164/350 (46%), Gaps = 53/350 (15%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS-EVSEGAEDFMTPRDVVH 185
           EK  +L  + + F+ ++L P  +    ++   +E+++    S +   GAE F TP+ V  
Sbjct: 92  EKNEVLRNLLEKFNCLDLRPSQLEFTDIVGEAFEYMVAMLASNDRKRGAESF-TPKQVCE 150

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L  A L+ P     KE       +YDPTCG+GG L      V   G    I      +GQ
Sbjct: 151 L-LAFLVQP-----KEDD----RIYDPTCGSGGLLLQVYKKVP--GGKASI------YGQ 192

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGK--RFHYCLSNPPF 301
           E+  ET A+C+  M +  +           I +G TLS  K++   K  +F   ++N PF
Sbjct: 193 EINAETWAICMMNMFLHGINE-------AQIWKGDTLSNPKNIQNDKLMKFQVVVANLPF 245

Query: 302 G-KKWEK------DKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPN 351
              +W++      D D   K+  + EL    RF  G+P  S G   F++H+   L+    
Sbjct: 246 SLNQWDRGFLYKVDVDNQIKKKMSAELDPYHRFDLGVPPASKGDYAFILHMLASLD---E 302

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR A+VL    LF G   + E  IRR ++E +L++ ++ LP +LF+ T+I   + I  
Sbjct: 303 KNGRMAVVLPHGVLFRG---ASEGNIRRQIVEMNLLDTVIGLPANLFYGTSIPVCVLIFK 359

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             +T+     +  I+A+        +GK   I+ D    +I+  Y++R+N
Sbjct: 360 KNRTDR---DILFIDAS--GNENIEKGKNHNILQDSAITRIVRTYMARQN 404


>gi|238768521|dbj|BAH66833.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 504

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++           P   R +YDP 
Sbjct: 147 VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI----------EPYKGR-IYDPC 195

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR +++D      
Sbjct: 196 CGSGGMFVQSERFVE---KHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGE--- 249

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   DL  G +  Y L+NPPF    W +++   +         R+  G+P   
Sbjct: 250 ---RNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY--------RWQFGIPPKG 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   PNG   A  VL++  +    +G  E EIR+ L+E DL+E IV 
Sbjct: 299 NANYAWIEHMISKL--APNG--TAGFVLANGSM--STSGKDELEIRKNLIEQDLVECIVT 352

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  LF+ T I   LW +SN K +    ER  ++  I+A ++
Sbjct: 353 LPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREI 394


>gi|163743541|ref|ZP_02150918.1| type I restriction system adenine methylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161383126|gb|EDQ07518.1| type I restriction system adenine methylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 520

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 155/341 (45%), Gaps = 51/341 (14%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           +L ++   FS +++H      R ++  +YE+ I  F S   +   +F TPR VV     +
Sbjct: 133 MLGELVDLFSNVKMHDSADRARDLLGRVYEYFISGFASAEGKRGGEFFTPRSVVRTLVEM 192

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L           P   R +YDP CG+GG    +   + D G +   P  L  +GQE+   
Sbjct: 193 L----------EPYQGR-VYDPCCGSGGMFIQSEKFIEDHGGN---PLNLSVYGQEINHT 238

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK 309
           T  +    + +  +++D   D         +  KD   G +  Y L+NPPF    W  ++
Sbjct: 239 TWRLAKMNLAVHGIDADIAWD------SAGSFHKDAHPGLKADYILANPPFNISDWGGER 292

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             +E +       R+  G P   + +  ++ H+ +   L P G   A +VL++  + +  
Sbjct: 293 -LLEDD-------RWQYGPPPKGNANFAWIQHIIH--HLAPRG--HAGVVLANGSMSS-- 338

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLI 425
             SGE EIR+ L+E D ++ +VALP  LF+ T I   LWILS  K+     +RRG+V  I
Sbjct: 339 QTSGEGEIRKRLIEEDRVDCMVALPGQLFYSTQIPVCLWILSRDKSANGLRDRRGEVLFI 398

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +A       RN G     + D  RR+  D  + R  G + R
Sbjct: 399 DA-------RNMGH----MVDRVRREFSDEDIERIAGTYRR 428


>gi|57505320|ref|ZP_00371249.1| type I restriction-modification system, M subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016456|gb|EAL53241.1| type I restriction-modification system, M subunit [Campylobacter
           upsaliensis RM3195]
          Length = 533

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 124/502 (24%), Positives = 209/502 (41%), Gaps = 84/502 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------------- 56
           +L + IWK A  L G+    DF   +L     R +   L    +A +             
Sbjct: 14  ALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISSTGGRGGGGE 73

Query: 57  -EKYLAFGGSNIDL-----ESFVKVAGYSFYNTSEYS----LSTLGSTNTRNNLESYIAS 106
              Y      +ID+     E+ +   G+  Y +  +          +TN    L +  A 
Sbjct: 74  PNSYENLSDKDIDVNEKSREAIIDAKGFLIYPSQLFCNVLKAHAQDTTNLNQTLSNVFAQ 133

Query: 107 FSDNA---------KAIFEDFDFSST-------IARLEKAGLLYKICKNFSGIELHPDTV 150
              +          K +F D D +S+       + R EK   LY++ +  + ++LH +  
Sbjct: 134 IEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEK---LYQVMQEIATLDLHYNDN 190

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 + YE+L+R +  +  +   +F TP++V HL   L+     +  K+S   +  +Y
Sbjct: 191 AIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSHLLARLV-----SYGKQS---VNKVY 242

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L       A       I       GQE+ P ++ +C   ML+  +  +   
Sbjct: 243 DPACGSGSLLL----QFAKVLGIDNIKQGFF--GQEINPTSYNLCRINMLLHDIGFE--- 293

Query: 271 DLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
             + +I  G TL +        F   +SNPP+  KW  D D      K     RF P   
Sbjct: 294 --NFDIALGDTLLEPKHADDEPFDAIVSNPPYSTKWIGDDDL-----KLINDPRFAPAGV 346

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F MH+ + L    +  G  AIV     L+ G     E +IR++L++ + I
Sbjct: 347 LAPKSYADLAFTMHMLSWL----SPSGTCAIVEFPGVLYRG---GKEKQIRKYLIDQNFI 399

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LFF TNIAT + +L   K  ++      I+A++ +T I     K+ I+   
Sbjct: 400 DTIIQLPENLFFGTNIATSIIVL---KKNKQSVATLFIDASEQFTKI----TKKNILEST 452

Query: 448 QRRQILDIYVSRENGK-FSRML 468
               I++ Y  RE+ + FSR++
Sbjct: 453 HINTIVEAYAKREDIEHFSRLV 474


>gi|325953724|ref|YP_004237384.1| type I restriction-modification system, M subunit [Weeksella virosa
           DSM 16922]
 gi|323436342|gb|ADX66806.1| type I restriction-modification system, M subunit [Weeksella virosa
           DSM 16922]
          Length = 515

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 207/485 (42%), Gaps = 88/485 (18%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL----- 69
           IW+ A ++ G     DF + +L  TL  R             ++ + +     D+     
Sbjct: 14  IWRIANEVRGSVDGRDFKQFVLG-TLFYRFISENFTNYIEGGDESINYAALQDDVITPEI 72

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-------------NAKAIF 115
            E  VK  GY  Y  S+  ++   + +T  NL + + +  D             + K +F
Sbjct: 73  KEDAVKTKGYFIY-PSQLFINIAKNAHTNPNLNTDLKAIFDAIESSANGYPSEPDIKGLF 131

Query: 116 EDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-----HPDTVPDRVMSNIYEHLIRR 165
            DFD +ST  RL      K   L K+ K   GIE+       D   D +  + YE LI  
Sbjct: 132 ADFDTTST--RLGNTVEAKNNTLAKVLK---GIEILDFGNFEDNQID-LFGDAYEFLIGN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM- 224
           + +   +   ++ TP+ V  L   L      A+ K++   +  +YDP CG+G  L  A  
Sbjct: 186 YAANAGKSGGEYFTPQTVSKLIAQL------AMHKQTS--VNKIYDPACGSGSLLLQAKK 237

Query: 225 ---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              NH+ D G +          GQE+   T+ +    M +  +  D       NI  G+T
Sbjct: 238 HFDNHIIDEGFY----------GQEVNHTTYNLARMNMFLHNINYDKF-----NITLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L +  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LLQPEFGDEKPFDAIVSNPPYALKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +LF
Sbjct: 338 ILHALHYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + T+IA  + +LS  KT+    K Q I+A+  + +  + N      ++ D    +I+  +
Sbjct: 391 YGTSIAVNILVLSKHKTDT---KTQFIDASGEEFYKKVTN----NNVLEDQHIERIMQHF 443

Query: 457 VSREN 461
            ++E+
Sbjct: 444 DTKED 448


>gi|229002235|dbj|BAH57701.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 507

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++           P   R +YDP 
Sbjct: 150 VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI----------EPYKGR-IYDPC 198

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR +++D      
Sbjct: 199 CGSGGMFVQSERFVE---KHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGE--- 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   DL  G +  Y L+NPPF    W +++   +         R+  G+P   
Sbjct: 253 ---RNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY--------RWQFGIPPKG 301

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   PNG   A  VL++  +    +G  E EIR+ L+E DL+E IV 
Sbjct: 302 NANYAWIEHMISKL--APNG--TAGFVLANGSM--STSGKDELEIRKNLIEQDLVECIVT 355

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  LF+ T I   LW +SN K +    ER  ++  I+A ++
Sbjct: 356 LPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREI 397


>gi|126726005|ref|ZP_01741847.1| type I restriction-modification system, M subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126705209|gb|EBA04300.1| type I restriction-modification system, M subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 502

 Score =  110 bits (276), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 173/403 (42%), Gaps = 51/403 (12%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE- 128
           E+F    G+SFY+  +               ++   +     + +F D  F++     E 
Sbjct: 71  EAFALPKGHSFYDLYDRRHEAGNGQRIDEATQAIEQANLSKLENVFRDISFNANKLGEED 130

Query: 129 -KAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            K  LL  + ++F+   ++L P  V    ++   YE+LI RF S   + A +F TP  V 
Sbjct: 131 QKNDLLKSLLEDFNTPALDLRPSRVGQLDIIGGAYEYLISRFASSAGKKAGEFYTPAQVS 190

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L  A L+DP              + DPTCG+   L      + D     K       +G
Sbjct: 191 ML-MARLMDPQQN---------DEICDPTCGSASLLMKCGKLIRDSSGTRK----YALYG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTG----KRFHYCLSNP 299
           QE    T A+    + +   E+        +IQ G T+ S  L TG    + F   ++NP
Sbjct: 237 QEAIGSTWALAKMNLFLHGEEN-------HDIQWGDTIRSPKLTTGDDTLRHFDVVVANP 289

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF   KW       +K       GRF  G+P  + G   F++H+   +E      GR A+
Sbjct: 290 PFSLDKWGVAAAEADK------FGRFTRGIPPKTKGDYAFILHM---IETMKPRTGRMAV 340

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF G   S E +IR+ L+E +L++A++ LP  LFF T I   + +   RK ++ 
Sbjct: 341 VVPHGVLFRG---SSEGKIRKQLIEQNLLDAVIGLPEKLFFGTGIPAAILVFRKRKADD- 396

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              V  I+A+  + S    G  +  + D    +I++ Y +R +
Sbjct: 397 --TVLFIDASREFDS----GTNQNTLTDSHLDKIVETYAARAD 433


>gi|307243983|ref|ZP_07526104.1| putative type I restriction-modification system, M subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492633|gb|EFM64665.1| putative type I restriction-modification system, M subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 521

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 215/479 (44%), Gaps = 68/479 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R  + E +   G    D+
Sbjct: 10  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASYKFEECRRNIIENH---GEKYADM 66

Query: 70  ESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDN---AKAIFEDFDFSS 122
           + F       FY   E    Y +      +    +++ + +   N    K    D  +S 
Sbjct: 67  KPFYTKENV-FYLPEESRWSYIIENAKQDDIALKIDTALFTIEKNNPLLKGALPDNYYSR 125

Query: 123 TIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                 K A LL +I +      ++ +   + ++  +YE+ + +F     +G  +F TP+
Sbjct: 126 LHIDTSKLASLLDEINR------INTNDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPK 179

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPIL 240
            +V+L  A +L+P D +          LYDP CG+GG    ++  V A  G+  K+    
Sbjct: 180 CIVNL-IAEMLEPYDGI----------LYDPCCGSGGMFVQSVKFVEAHSGNKKKVSI-- 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSN 298
             +GQE    T  +    + IR         +S N+ +   +T + D     +  + ++N
Sbjct: 227 --YGQEYTNTTFKLAKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADFIMAN 276

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF +K W    + ++    NG        +P  S+ +  +++++ +KL    +  G A 
Sbjct: 277 PPFNQKEWRTANELIDDPRWNG------YEVPPTSNANYGWILNIVSKL----SQNGVAG 326

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE- 416
            +L++  L +      E +IRR L+EN+L+EAIV LP +LF+ T+I+  LWIL+  K + 
Sbjct: 327 FLLANGALSDD---GTELKIRRQLIENNLVEAIVILPRNLFYTTDISVTLWILNKNKKDR 383

Query: 417 --ERRGKVQLINATD---LWTSIRNEG----KKRRIINDDQRRQILDIYVSRENGKFSR 466
             E+ G+++     +   L+  +R  G    KK   + D+ R ++ ++Y + +   F +
Sbjct: 384 VVEQNGQIKRYRNREKEILFMDLRQMGSPYEKKYIELTDEDRAKVTEVYHNWQQENFEK 442


>gi|239994805|ref|ZP_04715329.1| type I site-specific deoxyribonuclease [Alteromonas macleodii ATCC
           27126]
          Length = 530

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 163/355 (45%), Gaps = 48/355 (13%)

Query: 109 DNAKAIFEDFDFSST-IARLEKAG--LLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIR 164
           D+   +F+D D +S  + + EKA   L+ KI  +   I+ LH +T  D V+ + YE+LI 
Sbjct: 131 DDFNGLFDDIDLTSNKLGKTEKAKNELVSKILAHLDAIDFLHHETDID-VLGDAYEYLIG 189

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S   + A +F TP  V  L   L+              ++++YDPTCG+G  L    
Sbjct: 190 MFASGAGKKAGEFYTPPMVSKLLAKLV--------TMGKTKLKSVYDPTCGSGSLLLRVA 241

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             V + G +          GQE  P T+ +    M++  +     R    +IQQ  TL  
Sbjct: 242 KEVKEVGKY---------CGQESNPSTYNLARMNMILHGVH---YRQF--DIQQDDTLET 287

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +RF   ++NPPF   W   +  +  E +  + G+  P     S     F+ H+ +
Sbjct: 288 PHHIEERFEAVVANPPFSANWSASQGFLSDE-RFQDYGKLAPK----SKADFAFVQHMVH 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
           +L+      G  A+VL    LF G A   E  IR+ L++N + ++ ++ LP ++F+ T+I
Sbjct: 343 QLD----ENGTMAVVLPHGVLFRGAA---EGHIRKHLIKNKNYLDVVIGLPANIFYGTSI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLW------TSIRNEGKKRRIINDDQRRQI 452
            T + +L  +K  + +  +  I+A+  +        IR E   R +   D+R Q+
Sbjct: 396 PTCILVL--KKHRQHKDNILFIDASQNFGKATNQNYIREEDLARILEAVDEREQL 448


>gi|294793176|ref|ZP_06758322.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
 gi|294456121|gb|EFG24485.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
          Length = 503

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 194/460 (42%), Gaps = 62/460 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E      R + L   G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEK-----RYEELIKEGDGFENDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAI-FEDFDFSSTIAR------ 126
                F+   E   +T+ S      +   I    DNA +AI  E+    + + +      
Sbjct: 70  AEENIFFVPEEARWTTIASAAHTPEIGLVI----DNAMRAIEKENTTLKNVLPKNYASPD 125

Query: 127 LEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           L+K  +L ++   F+  +++        ++   YE+ I +F S       +F TP  +V 
Sbjct: 126 LDKR-VLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGTKGGEFYTPSSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
              ++L           P     +YDP CG+GG    +   V    +H      +  +GQ
Sbjct: 185 TIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSGNRGTISVYGQ 231

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KK 304
           E   +T  +    M IR +      D +    Q  T   DL    +  + ++NPPF    
Sbjct: 232 ESNADTWKMAKMNMAIRGI------DANFGPYQADTFFNDLHKTLKADFIMANPPFNLSN 285

Query: 305 W--EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           W  EK KD V          R+  GLP   + +  ++ H+ + L       G+  +VL++
Sbjct: 286 WGQEKLKDDV----------RWKYGLPPAGNANYAWIQHMIHHL----GSNGKIGLVLAN 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L      SGE +IR+ ++E DL+E IVALPT LF+   I   LW +S  K  +++GK 
Sbjct: 332 GAL--SSQTSGEGDIRKNIIEADLVEGIVALPTQLFYSVTIPVTLWFISMNK--KQKGKT 387

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             I+A ++   +    +K R   DD  +++ D + S ++G
Sbjct: 388 LFIDARNMGYMVN---RKHRDFTDDDIQRLADTFSSFQDG 424


>gi|56808773|ref|ZP_00366489.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Streptococcus pyogenes M49 591]
 gi|209560056|ref|YP_002286528.1| Putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes NZ131]
 gi|209541257|gb|ACI61833.1| Putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes NZ131]
          Length = 526

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 179/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTIANVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           D+  ++ILD Y SR+N  KFS +  +
Sbjct: 430 DNHIKKILDAYKSRDNSDKFSYLASF 455


>gi|303252525|ref|ZP_07338688.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247274|ref|ZP_07529323.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648493|gb|EFL78686.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856247|gb|EFM88401.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 517

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 203/481 (42%), Gaps = 73/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYAAWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI L  E  +K  GY  Y +  +  + + + ++  NL + +                 
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFE-NVVKNAHSNPNLNTELKEIFTAIESSATGYDSE 125

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           ++ K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE 
Sbjct: 126 NDIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEF 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L 
Sbjct: 183 LISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLL 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D    H I       GQE+   T+ +    M +  +  D       +I  G T
Sbjct: 235 QAKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDT 283

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F
Sbjct: 284 LLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 339 ILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  
Sbjct: 392 FGTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSD 444

Query: 459 R 459
           +
Sbjct: 445 K 445


>gi|57865903|ref|YP_190015.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis RP62A]
 gi|57636561|gb|AAW53349.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis RP62A]
          Length = 518

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 168/361 (46%), Gaps = 48/361 (13%)

Query: 114 IFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSE 169
           +F D D +ST        +  L+ K+  N + +  +H D   D ++ + YE+LI +F + 
Sbjct: 137 LFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEID-MLGDAYEYLIGQFAAN 195

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   ++           P + + +YDPTCG+G  L   +   AD
Sbjct: 196 AGKKAGEFYTPQQVSKILAKIVT-------TNKPNL-KNVYDPTCGSGSLLL-RVGREAD 246

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              ++         GQE    T  +    ML+  +     +     I    TL    F G
Sbjct: 247 VRFYY---------GQEYNNTTFNLARMNMLLHDVNYTRFK-----IDNDDTLENPAFRG 292

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++F   ++NPP+  KW  D   ++ E  +G    +G   PK S     F+ H+ + L+  
Sbjct: 293 EKFDAVVANPPYSAKWSADPSFLDDERFSG----YGKLAPK-SKADFAFIQHMIHYLD-- 345

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLW 408
               G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I T + 
Sbjct: 346 --DNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNHLDAVIGLPANLFFGTSIPTSIL 400

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           +   +K  E    V  I+A+  +     +GK + ++ D+   +I++ Y +RE   KFS +
Sbjct: 401 VF--KKCREDSDNVLFIDASQSF----EKGKNQNLLTDEDVDKIVETYRNRETIDKFSYV 454

Query: 468 L 468
           +
Sbjct: 455 V 455


>gi|15675719|ref|NP_269893.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71911436|ref|YP_282986.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS5005]
 gi|13622937|gb|AAK34614.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71854218|gb|AAZ52241.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS5005]
          Length = 526

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 179/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLSNADTLDADWPTDEPINFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           D+  ++ILD Y SR+N  KFS +  +
Sbjct: 430 DNHIKKILDAYKSRDNSDKFSYLASF 455


>gi|257452048|ref|ZP_05617347.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|257466153|ref|ZP_05630464.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917310|ref|ZP_07913550.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058596|ref|ZP_07923081.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R]
 gi|313684272|gb|EFS21107.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R]
 gi|313691185|gb|EFS28020.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 502

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 190/429 (44%), Gaps = 61/429 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     D+ KVI+    LR +  + E     + E+   F     D +++++
Sbjct: 15  IWDAACVLWGHIPAADYRKVIVGLIFLRYISSSFEKKYKELLEEGYGF---EDDRDAYME 71

Query: 75  VAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFSDNA-KAI-FEDFDFSSTIARLEKAG 131
                F+   E   ST+  +T+T     + I    DNA +AI  E+    + + ++  + 
Sbjct: 72  --DNIFFVPKEARWSTISAATHT-----AEIGMVIDNAMRAIEAENKTLKNVLPKIYASP 124

Query: 132 -----LLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                +L ++   F+  I +        ++   YE+ I +F +       +F TP  +V 
Sbjct: 125 DLDKRVLGEVVDLFTNNINMEDTEESKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHG 244
               +L   D+            +YDP CG+GG    ++  + A  G+ + I       G
Sbjct: 185 TIVEILKPFDNC----------RVYDPCCGSGGMFVQSVKFLQAHSGNRNHISVF----G 230

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE   +T  +    M IR +      D +    Q  T   DL +  +  + ++NPPF   
Sbjct: 231 QESNADTWKMAKMNMAIRGI------DANFGPYQADTFFNDLHSTLKADFIMANPPFNLS 284

Query: 304 KWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            W +DK  D V          R+  GLP   + +  ++ H+ +   L PNG  +  +VL+
Sbjct: 285 NWGQDKLQDDV----------RWKYGLPPAGNANYAWIQHMVH--HLAPNG--KIGLVLA 330

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +  L      SGE  IR+ ++E+DLIE IVA+PT LF+   I   LW +S  K ++++GK
Sbjct: 331 NGAL--STQTSGEGNIRKAIIEDDLIEGIVAMPTQLFYSVTIPVTLWFIS--KNKKQKGK 386

Query: 422 VQLINATDL 430
              I+A ++
Sbjct: 387 TLFIDARNM 395


>gi|19746827|ref|NP_607963.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes
           MGAS8232]
 gi|19749065|gb|AAL98462.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes MGAS8232]
          Length = 526

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 179/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    FSD  ++      +FED D +S  +     ++   +  + K  +  E+  + V
Sbjct: 112 LESLAQGFSDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLN--EIGFEAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           D   ++ILD Y SR+N  KFS +  +
Sbjct: 430 DSHIKKILDAYKSRDNSDKFSYLASF 455


>gi|285959361|gb|ADC39983.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 518

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 205/483 (42%), Gaps = 68/483 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNI 67
           A L   +W  A DL G+   ++F   IL     R L E   E     ++E  +++  +  
Sbjct: 12  AELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAEAWE 71

Query: 68  DLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLESYIASFS 108
           D E         + + G+                T  + +  L     +    +      
Sbjct: 72  DEEYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGEDSE 131

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIR 164
           ++   +F D D ++T        +  L+ K+  N + +  +H D   D ++ + YE+LI 
Sbjct: 132 EDFDHLFADMDLNATRLGNTNAARTKLISKVMVNLATLPFVHSDIEID-MLGDAYEYLIG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   + A +F TP+ V  +   ++           P + + +YDPTCG+G  L   +
Sbjct: 191 QFAANAGKKAGEFYTPQQVSKILAKIVT-------TNKPNL-KNVYDPTCGSGSLLL-RV 241

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              AD   ++         GQE    T  +    ML+  +     +     I    TL  
Sbjct: 242 GREADVRFYY---------GQEYNNTTFNLARMNMLLHDVNYTRFK-----IDNDDTLEN 287

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F G++F   ++NPP+  KW  D   ++ E  +G    +G   PK S     F+ H+ +
Sbjct: 288 PAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSG----YGKLAPK-SKADFAFIQHMIH 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I
Sbjct: 343 YLD----DNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGTSI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   +K  E    V  I+A+  +     +GK + ++ D+   +I++ Y +RE   
Sbjct: 396 PTSILVF--KKCREDSDNVLFIDASQSF----EKGKNQNLLTDEDVDKIVETYRNRETID 449

Query: 463 KFS 465
           KFS
Sbjct: 450 KFS 452


>gi|218263901|ref|ZP_03477849.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222412|gb|EEC95062.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii
           DSM 18315]
          Length = 497

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 139/298 (46%), Gaps = 51/298 (17%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +M + YE L+++F  +    A +F TPR VV L   +L DP        PG   T+Y
Sbjct: 157 PADLMGDAYEILLKKFADDSKAQAGEFYTPRSVVRLLVHIL-DP-------QPG--ETVY 206

Query: 211 DPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--- 263
           DP CG+GG L +A+ ++ D    CGS           GQE      A+    + +     
Sbjct: 207 DPACGSGGMLIEAIRYMHDDSLCCGS---------IFGQEKNVVNAAIAKMNLFLHGASD 257

Query: 264 ---LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNG 319
              ++ D  RD    I QG  ++K       F   ++NPPF  + W   + + +K  +N 
Sbjct: 258 FNVMQGDTLRD--PKILQGGNIAK-------FDCVIANPPFSLENWGATEWSSDKYKRNI 308

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                  G P  S G   ++ H+   +    +G GR A+V+    LF G   + E+EIR+
Sbjct: 309 Y------GTPSDSCGDYAWIQHMICSMS---SGKGRMAVVMPQGILFRG---NQEAEIRK 356

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            L+E+DLIEA+V L   LF+ T ++    I+   K     G++ +I+ + + T  R +
Sbjct: 357 QLVESDLIEAVVTLGDKLFYGTGLSPCFLIIRRMKQAHHSGRILMIDGSKILTQKRAQ 414


>gi|110004783|emb|CAK99117.1| probable adenine-specific dna-methyltransferase hsdm subunit
           transmembrane protein [Spiroplasma citri]
          Length = 517

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 136/289 (47%), Gaps = 35/289 (12%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           EK+ ++ K+    + I    +     ++ + YE+LI +F SE  + A +F TP+ V  L 
Sbjct: 156 EKSKIIAKVMLKINEINFEINESEIDILGDAYEYLISKFASESVKAAGEFYTPQPVSKLL 215

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L+         +    I+T+YDPTCG+G  L      +       KI  +   +GQEL
Sbjct: 216 AKLV--------SQGKTEIKTVYDPTCGSGSLLLRVYKEL-------KIGHL---YGQEL 257

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +  ++ +    M++  L+ +       NI  G TL  D F G+ F   ++NPP+   W  
Sbjct: 258 KTNSYNIARMNMMLHGLKYNKF-----NIYNGDTLEDDGFKGQEFEIIVANPPYSSHWSA 312

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           ++  +  E        +G   PK +     F+ ++  KL    +  G  A V+    LF 
Sbjct: 313 NQKFLSDER----FSAYGKLAPK-TKADFAFIQNMIYKL----SDNGVMAAVIPHGILFR 363

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           G A   E  IR++++E + I+ I++LP ++F+ T+I T + ++   K +
Sbjct: 364 GNA---ELIIRKYMIEKNWIDTIISLPVNMFYGTSIPTCIIVMKKCKID 409


>gi|89890210|ref|ZP_01201720.1| type I restriction-modification system methyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517125|gb|EAS19782.1| type I restriction-modification system methyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 551

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 185/431 (42%), Gaps = 64/431 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFGG----- 64
           L   +W  A DL G+    DF   IL F   + L   +E   + + +   L +G      
Sbjct: 10  LKQTLWNIANDLRGNMDADDFRDYILGFIFYKYLSRKMELYANVILQPDGLDYGTVEQHS 69

Query: 65  ------SNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNL-------------ESYI 104
                   I  E+  K+ GY    +  +S L+  G++  +NN              +S +
Sbjct: 70  QADELLEAIRYEALDKL-GYFLKPSELFSELAKRGNSGNKNNFILGDLANVLTSIEQSTM 128

Query: 105 ASFS-DNAKAIFEDFDF-SSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            S S D+   +FED D  SS + + E A   L+ K+  +  GI+   +     ++ + YE
Sbjct: 129 GSESEDDFGNLFEDLDLTSSKLGKTEDAKNELIVKVLTHLEGIDFDLENSDSDILGDAYE 188

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F S   + A +F TP+ V  +   L+          +   ++++YDPTCG+G  L
Sbjct: 189 YLIGQFASGAGKKAGEFYTPQQVSKILAQLV--------TTNKTKLKSVYDPTCGSGSLL 240

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V + G           +GQE  P T+ +C   M++  +    R D+       +
Sbjct: 241 LRVAKEVKEVGEF---------YGQESNPTTYNLCRMNMIMHDVHY-KRFDIYNEDTLVN 290

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                L   KRF   ++NPPF   W     A      +     +G   PK S     F+ 
Sbjct: 291 PSPNHL--DKRFEAIVANPPFSANWS----ASPLFMSDDRFSDYGKLAPK-SKADFAFVQ 343

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFF 399
           H+ ++L+      G  A VL    LF G A   E  IR++L+ E + ++A++ LP ++F+
Sbjct: 344 HMIHQLD----DNGTMATVLPHGVLFRGAA---EGHIRKFLIEEKNYLDAVIGLPANIFY 396

Query: 400 RTNIATYLWIL 410
            T+I T + +L
Sbjct: 397 GTSIPTCILVL 407


>gi|311063620|ref|YP_003970345.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
 gi|310865939|gb|ADP35308.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 520

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 203/493 (41%), Gaps = 74/493 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW  A  L G     DF + +L F   R +    E   S + E   
Sbjct: 1   MTNSGTQRAELHKTIWSIANVLRGSVDGWDFKQYVLGFLFYRFIS---EDITSYLNEYEH 57

Query: 61  AFGGSNIDL------------ESFVKVAGY------SFYNTSEYSLS--TLGSTNTR--N 98
             G  + D             +S V+  GY       F N    + +   L  T  R   
Sbjct: 58  QAGDVDFDYAKLDDATAEQVRKSMVEEKGYFILPSDLFANVRRCADADENLNETLQRVFK 117

Query: 99  NLE-SYIASFSDNA-KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N+E S I S S+++ + +F+D D +S       +++   L K+      ++L  ++  D 
Sbjct: 118 NIEGSAIGSRSESSLRGLFDDLDLNSRKLGDTVVDRNAKLVKVLNAIGDLDLGTESFADN 177

Query: 154 ---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 + YE+L+  + +   +   +F TP++V  L T +               +  +Y
Sbjct: 178 KIDAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIA--------THGKSEVNKVY 229

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L  ++  +                GQE    T+ +C   M +  +  D   
Sbjct: 230 DPACGSGSLLLQSIKVLGKDKVRQGF------FGQEKNLTTYNLCRINMFLHDVNYD--- 280

Query: 271 DLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               NI  G TL +   +  + F   +SNPP+  KWE D +            RF P   
Sbjct: 281 --HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPTLINDP-----RFAPAGV 333

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F MH+ + L       G AAIV     L+ G     E +IR++LLE + I
Sbjct: 334 LAPKSKADLAFTMHMLSWLA----ADGTAAIVEFPGVLYRG---GKEQKIRKYLLEGNFI 386

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP +LFF T+IAT + +L   K ++    V  I+A++ +  + N+ +    ++ D
Sbjct: 387 DAVIQLPPNLFFGTSIATCIIVLKKSKNDD---SVLFIDASERFVHVGNQNQ----LSPD 439

Query: 448 QRRQILDIYVSRE 460
               I+D YV RE
Sbjct: 440 DIAAIMDAYVKRE 452


>gi|168211072|ref|ZP_02636697.1| type I restriction-modification system, M subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170710874|gb|EDT23056.1| type I restriction-modification system, M subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 514

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 207/481 (43%), Gaps = 73/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP------------------ 50
           ++L + +W  A DL G+   ++F   IL     R L   +E                   
Sbjct: 12  SNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSYEEAWE 71

Query: 51  ---TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
               R A++E+ +   G  I+   F+     +   T ++ +  L      N  ES +   
Sbjct: 72  DEELREALKEELVNDIGYFIE-PKFLFDKLLAKIETGDFDIEILEEA-INNITESTLGQE 129

Query: 108 SDNA-KAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           S+     +F+D D  ST    +   ++ L+ K+    + I+   D     ++ + YE+LI
Sbjct: 130 SEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYEYLI 189

Query: 164 RRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +F +   + A +F TP+ V   LA  + +   D         ++ +YDPTCG+G  L  
Sbjct: 190 GQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTD---------LKNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                       +   + + +GQE    T+ +    ML+  ++ SD       NI+   T
Sbjct: 241 V----------SREAKVRMFYGQEKTSTTYNLARMNMLLHGVKYSDF------NIKNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L        +F   ++NPP+  KW +D   ++ E        +G   PK S     F+ H
Sbjct: 285 LENPQHGDLKFEAIVANPPYSAKWSRDDKFLDDER----FSAYGKLAPK-SKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + LE      G  A+VL    LF G A   E  IR+ L+E  ++++A++ LP ++FF 
Sbjct: 340 MIHHLE----DNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  +    +  I+A++ +     +GK + ++ D    +I++ Y  RE
Sbjct: 393 TSIPTVILVF--KKNRKNADNIMFIDASNEFE----KGKNQNVLRDRDVEKIVETYKKRE 446

Query: 461 N 461
           N
Sbjct: 447 N 447


>gi|153807714|ref|ZP_01960382.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185]
 gi|160886164|ref|ZP_02067167.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483]
 gi|160889102|ref|ZP_02070105.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492]
 gi|149129323|gb|EDM20537.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185]
 gi|156108049|gb|EDO09794.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483]
 gi|156861569|gb|EDO55000.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492]
          Length = 510

 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 181/436 (41%), Gaps = 59/436 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDL 69
           L +F+W  A  L G      + + I P    +R+ +   E     V E  + + G  ++ 
Sbjct: 20  LKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGMQVED 79

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-ESYIASFSDNA------------KAIFE 116
                  G  + +  E +       N  N L E++IA    N             + IF 
Sbjct: 80  LPIRIPDGAHWRDVREVT------ENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFG 133

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++
Sbjct: 134 PKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+  + 
Sbjct: 193 FYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEWQS 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
             +    GQE+   T ++    + +  +E     D S  I    TL    F      ++F
Sbjct: 243 VQVF---GQEVNGLTSSIARMNLYLNGVE-----DFS--IACADTLEHPAFLDGSHLRKF 292

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              L+NPP+  K+W ++K        N + GR   G P        F  H+   ++    
Sbjct: 293 DIVLANPPYSIKEWNREK------FMNDKWGRNFLGTPPQGRADYAFFQHIIASMD---R 343

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR AI+     LF       E E+R+ L+E D+++ ++ L  +LFF  ++   + I  
Sbjct: 344 NTGRCAILFPHGVLFRDE----EYELRKKLVEIDIVDCVIGLGPNLFFNASMEACIIICK 399

Query: 412 NRKTEERRGKVQLINA 427
           NRK +  +GKV  I+A
Sbjct: 400 NRKEDSHKGKVIFIDA 415


>gi|312872245|ref|ZP_07732318.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092329|gb|EFQ50700.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
          Length = 398

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 179/456 (39%), Gaps = 83/456 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +    +    F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIES--- 108

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MSNIYEHL 162
                  E   L   + KN++  +L+   + D V                  +   YE+ 
Sbjct: 109 -------ENKTLKDVLPKNYASPDLNKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYC 161

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F  +  +   +F TP  +V    ++L   D+            +YD  CG+GG    
Sbjct: 162 IAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQ 211

Query: 223 AMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           +      H  +CGS       +  +GQE   +T  +    M IR +++D          Q
Sbjct: 212 SAKFIRAHSGNCGS-------ISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQ 258

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGS 335
             T + DL    +  + L+NPPF    W ++K  D V          R+  G P   + +
Sbjct: 259 ADTFTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNAN 308

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             ++ H+ +   L PNG  +  +VL++  L       GE EIR+ ++E+DLIE I++LP 
Sbjct: 309 YAWIQHMIH--HLAPNG--KIGLVLANGAL--SSQSCGEGEIRQKIIEDDLIEGIISLPP 362

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            LF+   I   LW +S  K ++ +  + ++   D W
Sbjct: 363 KLFYSVQIPVTLWFISQNKNKKEKQSLLMLAKWDTW 398


>gi|313123730|ref|YP_004033989.1| hsdm-type i modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280293|gb|ADQ61012.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 532

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 174/371 (46%), Gaps = 56/371 (15%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIAR-LEK-----AGLLY 134
           N   + L+ LG  +  N LES  +SF    + +F+D+D +S  + + L+K     AG+L 
Sbjct: 104 NDGSFQLNQLG--DAFNKLESQGSSF----EGLFDDYDLYSKRLGQNLQKQTDTIAGVLK 157

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            I K      L     P   + + YE+LI +F SE  + A +F TP+++  L   L L  
Sbjct: 158 AIGK------LELVKTPGDTLGDAYEYLISQFASESGKKAGEFYTPQEISELLARLTLVG 211

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            D     S GM  ++YDP  G+G  L +   +V +          +  +GQE+   T  +
Sbjct: 212 KDY----SSGM--SVYDPAMGSGSLLLNFRKYVPNSSR-------ITYYGQEINTSTFNL 258

Query: 255 CVAGMLIRRLESDPRRDLS-KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDA 311
               M++  +      DL+ + ++ G TL +D        F   + NPP+  KW  DK  
Sbjct: 259 ARMNMILHHV------DLANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGF 312

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++    +    ++G  LP  S     FL+H    L+      G  AIVL    LF G A 
Sbjct: 313 LD----DPRFSKYGV-LPPKSKADYAFLLHGFYHLK----HSGAMAIVLPHGILFRGAA- 362

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E +IR+ LLE   I+A++ LP +LF+ T I T + +L   K +++   V  I+A+  +
Sbjct: 363 --EGKIRQKLLEEGAIDAVIGLPANLFYSTGIPTTIVVL---KKDKQDRSVLFIDASKEF 417

Query: 432 TSIRNEGKKRR 442
             ++ + K R+
Sbjct: 418 EKVKTQNKLRQ 428


>gi|329736387|gb|EGG72656.1| putative type I restriction-modification system, M subunit
           [Staphylococcus epidermidis VCU045]
          Length = 498

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++           P   R +YDP 
Sbjct: 147 VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI----------EPYKGR-IYDPC 195

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR ++++      
Sbjct: 196 CGSGGMFVQSERFVE---KHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNNLGE--- 249

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   DL  G +  Y L+NPPF    W +++   +         R+  G+P   
Sbjct: 250 ---RNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY--------RWQFGVPPKG 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   PNG   A  VL++  +    +G  E EIR+ L+E DL+E IV 
Sbjct: 299 NANYAWIEHMISKL--APNG--TAGFVLANGSM--STSGKDELEIRKNLIEQDLVECIVT 352

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF+ T I   LW +SN K  ER+ ++  I+A ++
Sbjct: 353 LPGQLFYSTQIPVCLWFISNNK--ERKNEILFIDAREI 388


>gi|154507566|ref|ZP_02043208.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797200|gb|EDN79620.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC
           17982]
          Length = 545

 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 198/488 (40%), Gaps = 75/488 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGG--- 64
           A L   IW+ A DL G     DF   +L F   R +   L    +A  RE  +A GG   
Sbjct: 27  AELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTPE 86

Query: 65  ----------SNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE---SYIASF 107
                     SN D E+     VK  G+ F   S+   +         NL    SY   F
Sbjct: 87  EAAAFDYATLSNEDAEAARDGIVKEKGF-FIRPSDLFGNVRAQAAGDENLNETLSYAFRF 145

Query: 108 SDNA----------KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            +N+          + +F+D D +ST       ++   L KI      + L         
Sbjct: 146 IENSARGSGSESDLRGLFDDVDVNSTKLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQIDA 205

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP++V  +   L LD            +  +YDP  
Sbjct: 206 FGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALD--------GRSDVARVYDPCA 257

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +    S           GQE+   T+ +C   M +  +        + 
Sbjct: 258 GSGSLLLKFAKLLGPSSSRQYF-------GQEINLTTYNLCRINMFLHDVNFS-----NF 305

Query: 275 NIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +I  G TL++   +  + F   +SNPP+  KW  KD  A+  + +    G   P     S
Sbjct: 306 DIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVGKDDIALINDPRFAPAGVLAPK----S 361

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E +IRR+L+EN+ + A++ 
Sbjct: 362 KADLAFTMHMLHWLA----EDGTAAIVEFPGVLYRGGA---EGKIRRYLVENNFVHAVIQ 414

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP DLFF T IAT + +L   + +     V  ++A+        EG K R+  ++Q+R I
Sbjct: 415 LPPDLFFGTTIATCIIVLKKARPDH---SVLFVDAS---AECVREGNKNRLTAENQQR-I 467

Query: 453 LDIYVSRE 460
           L +   R+
Sbjct: 468 LSLVSERQ 475


>gi|63146889|emb|CAI79472.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 532

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 171/369 (46%), Gaps = 52/369 (14%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N   + L+ LG  +  N LES  +SF    + +F+D+D  S   RL +   L K     +
Sbjct: 104 NDGSFQLNQLG--DAFNKLESQGSSF----EGLFDDYDLYSK--RLGQN--LQKQTDTIA 153

Query: 142 GI-----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           G+     +L     P   + + YE+LI +F SE  + A +F TP++V  L   L L   D
Sbjct: 154 GVIKAIGKLELVKTPGDTLGDAYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD 213

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                S GM  ++YDP  G+G  L +   +V +          +  +GQE+   T  +  
Sbjct: 214 Y----SSGM--SVYDPAMGSGSLLLNFRKYVPNSSR-------ITYYGQEINTSTFNLAR 260

Query: 257 AGMLIRRLESDPRRDLS-KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
             M++  +      DL+ + ++ G TL +D        F   + NPP+  KW  DK  ++
Sbjct: 261 MNMILHHV------DLANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD 314

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               +    ++G  LP  S     FL+H    L+      G  AIVL    LF G A   
Sbjct: 315 ----DPRFSKYGV-LPPKSKADYAFLLHGFYHLK----HSGAMAIVLPHGILFRGAA--- 362

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IR+ LLE   I+A++ LP +LF+ T I T + +L   K +++   V  I+A+  +  
Sbjct: 363 EGKIRQKLLEEGAIDAVIGLPANLFYSTGIPTTIVVL---KKDKQDRNVLFIDASKEFEK 419

Query: 434 IRNEGKKRR 442
           ++ + K R+
Sbjct: 420 VKTQNKLRQ 428


>gi|328947421|ref|YP_004364758.1| type I restriction-modification system, M subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447745|gb|AEB13461.1| type I restriction-modification system, M subunit [Treponema
           succinifaciens DSM 2489]
          Length = 514

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 208/487 (42%), Gaps = 76/487 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE---CA-LEPTRSAVREKYLAFGG 64
           A L   IWK A ++ G     DF + +L     R +    CA +E    ++   Y +   
Sbjct: 8   AELQAQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFCAYIEADDESIV--YASLED 65

Query: 65  SNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD----------- 109
           S I  E     +K  GY  Y  S+  ++   + N   +L + +A  FS+           
Sbjct: 66  SIITPEIKDDAIKTKGYFIY-PSQLFVNIAKNANDNESLNTDLAEIFSEIEKSATGYDSE 124

Query: 110 -NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL---HPDTVPDRVMSNIYE 160
            + K +F DFD +S   RL     EK   L  +    SG+     H + +   +  + YE
Sbjct: 125 QDIKGLFADFDTTSN--RLGNTVKEKNSRLAAVINGVSGLNFGNFHDNQID--LFGDAYE 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L      A+ K+    +  +YDP CG+G  L
Sbjct: 181 FLISNYAANAGKSGGEFFTPQNVSKLIARL------AMHKQEN--VNKIYDPACGSGSLL 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     +    +KI       GQE+   T+ +    M +  +  D       NI+ G 
Sbjct: 233 LQAKKQFEE----NKIEDGFF--GQEINHTTYNLARMNMFLHNINYDKF-----NIKLGD 281

Query: 281 TLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL+   F   K F   +SNPP+   W    D            RF P   L   S     
Sbjct: 282 TLTNPQFKDDKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 337 FILHSLNYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISLAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IA  + +LS  K +    K+Q I A +L+    N      I+ D+   +I++ + 
Sbjct: 390 FYGTSIAVNILVLSKHKEDT---KIQFIEAGELYQKETN----NNILTDEHIEKIIEAFD 442

Query: 458 SRENGKF 464
           S+ + ++
Sbjct: 443 SKNDIQY 449


>gi|15828553|ref|NP_325913.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089495|emb|CAC13255.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma
           pulmonis]
          Length = 332

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 130/264 (49%), Gaps = 29/264 (10%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPETHAVCVAGML 260
           +P    ++YDP CGTGG    A  ++      + +P   L  +GQE + +T  +    ++
Sbjct: 10  NPESDSSIYDPCCGTGGMFIQAKQYL----QKNNLPTDELKIYGQEFQNQTWKLARINLI 65

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNG 319
           +   + D   D    ++   T + DL   K+F   L+NPPF  KKW+ +  + +      
Sbjct: 66  LNGFDPD---DTHLGLRSEDTFNDDLTGNKKFDIVLANPPFNVKKWQTNDISGDP----- 117

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              RF  G+P   +G+  ++ H+  KL    N  GRAAIVL++  +    +   E  IR+
Sbjct: 118 ---RFAWGMPPEGNGNYAWISHIVYKL----NRKGRAAIVLANGSV--SSSQKNELAIRK 168

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +LE + IEAI++LP  LF+ T IA  +WI +N+K  +      LINA +L      E K
Sbjct: 169 KMLEENKIEAIISLPDKLFYTTGIAATIWIFNNQKEND---DFLLINAEELGEL---ESK 222

Query: 440 KRRIINDDQRRQILDIYVSRENGK 463
           K R +      +I+D+Y     GK
Sbjct: 223 KLRHLTKSNIEKIVDVYKQFREGK 246


>gi|159038425|ref|YP_001537678.1| N-6 DNA methylase [Salinispora arenicola CNS-205]
 gi|157917260|gb|ABV98687.1| N-6 DNA methylase [Salinispora arenicola CNS-205]
          Length = 810

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 52/325 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--TL 209
           D ++ + YE+L+R F  E  +    F TP +V  +   L+           PG  +  T+
Sbjct: 135 DDLLGDAYEYLMRHFARESGKSKGQFYTPAEVSRVLARLV--------GIGPGTRQDHTV 186

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPTCG+G  L                P  L  +GQE +  T A+    M++   E    
Sbjct: 187 YDPTCGSGSLLLKVAAEA---------PRGLTIYGQEKDNATWALARMNMILHGYED--- 234

Query: 270 RDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF 324
                +I++G T++   FT     + F + ++NPPF  K W    + +E E+     GRF
Sbjct: 235 ----CDIRKGDTIASPQFTQGAQLQTFDFAVANPPFSVKSW---SNGLEHEY-----GRF 282

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   +G   FL+H+   L+      G+AA+++    LF G A +G   IR+ LL  
Sbjct: 283 DVGRPPDKNGDFAFLLHILTSLK----SNGKAAVIMPHGVLFRGNAEAG---IRKELLRR 335

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I  ++ LP +LF+ T I   + +L     +ER   + +I+A+  +     +G K R+ 
Sbjct: 336 GYIMGVIGLPANLFYGTGIPACMVVLDKEHAQERT-SIFMIDASQGFI---KDGSKNRLR 391

Query: 445 NDDQRRQILDIYVSR-ENGKFSRML 468
           + D  R I+D++  R E  ++SR++
Sbjct: 392 SQDIHR-IVDVFTRRTEVERYSRVV 415


>gi|63146883|emb|CAI79466.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 532

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 171/369 (46%), Gaps = 52/369 (14%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N   + L+ LG  +  N LES  +SF    + +F+D+D  S   RL +   L K     +
Sbjct: 104 NDGSFQLNQLG--DAFNKLESQGSSF----EGLFDDYDLYSK--RLGQN--LQKQTDTIA 153

Query: 142 GI-----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           G+     +L     P   + + YE+LI +F SE  + A +F TP++V  L   L L   D
Sbjct: 154 GVIKAIGKLELVKTPGDTLGDAYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD 213

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                S GM  ++YDP  G+G  L +   +V +          +  +GQE+   T  +  
Sbjct: 214 Y----SSGM--SVYDPAMGSGSLLLNFRKYVPNSSR-------ITYYGQEINTSTFNLAR 260

Query: 257 AGMLIRRLESDPRRDLS-KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
             M++  +      DL+ + ++ G TL +D        F   + NPP+  KW  DK  ++
Sbjct: 261 MNMILHHV------DLANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD 314

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               +    ++G  LP  S     FL+H    L+      G  AIVL    LF G A   
Sbjct: 315 ----DPRFSKYGV-LPPKSKADYAFLLHGFYHLK----HSGAMAIVLPHGILFRGAA--- 362

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IR+ LLE   I+A++ LP +LF+ T I T + +L   K +++   V  I+A+  +  
Sbjct: 363 EGKIRQKLLEEGAIDAVIGLPANLFYSTGIPTTIVVL---KKDKQDRSVLFIDASKEFEK 419

Query: 434 IRNEGKKRR 442
           ++ + K R+
Sbjct: 420 VKTQNKLRQ 428


>gi|302380292|ref|ZP_07268763.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311897|gb|EFK93907.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 257

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  L G +    +G VI+P T++RR EC LE T+ AV EKY      +    +
Sbjct: 22  ANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKYT--DNKSYPERA 79

Query: 72  FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             +++G  FYNTS ++L  L +   N ++N   YI SFS N   I    +  + I ++ K
Sbjct: 80  MYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQLEIKTHIKKMNK 139

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              L+ + K FS ++L  +T     M  I+E+LI RF   V  G   + T RD++ +   
Sbjct: 140 ENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRFYQNVDAG--QYYTGRDIIKMMVY 197

Query: 190 LLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           ++  +  D ++ E  G + T+ D   G    +    N   +  S   +P
Sbjct: 198 VITAEGCDDIYDE--GKVITIADQAAGFRVIIVIEANSYVNTRSSRLLP 244


>gi|94989256|ref|YP_597357.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS9429]
 gi|94993144|ref|YP_601243.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS2096]
 gi|94542764|gb|ABF32813.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS9429]
 gi|94546652|gb|ABF36699.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS2096]
          Length = 526

 Score =  110 bits (275), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 179/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDA--MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A   +H +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSHQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           D   +++L+ Y SR+N  KFS +  +
Sbjct: 430 DSHIKKVLNAYKSRDNSDKFSYLASF 455


>gi|303230705|ref|ZP_07317452.1| type I restriction-modification system, M subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514465|gb|EFL56460.1| type I restriction-modification system, M subunit [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 531

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  +   ++      + +ES     T+YDPT
Sbjct: 173 VIGDAYEYLIGEFAAGSGKKAGEFYTPQQVSDMMAQIV-----TIGQESTPAF-TVYDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++       K P  +  HGQEL   T+ +    +++  + SD      
Sbjct: 227 MGSGSLMLNVRKYL-------KNPDRVQYHGQELNVTTYNLARMNLILHEVNSD-----D 274

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +N+  G TL+KD    + + +   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 275 QNLHNGDTLNKDWPVDEPYMFDSVVMNPPYSAKWSADPTFMD----DARFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGFYHLKT----SGTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +P +LFF T+I T + IL     + R G+ V  I+A++ +T  +N+ K    +  +  +
Sbjct: 383 GMPANLFFGTSIPTTVIILK----KNRPGRDVLFIDASNDFTKFKNQNK----LEPEHIK 434

Query: 451 QILDIYVSREN 461
           +I+D Y +R++
Sbjct: 435 RIVDTYNNRKS 445


>gi|323699619|ref|ZP_08111531.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. ND132]
 gi|323459551|gb|EGB15416.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 502

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 172/405 (42%), Gaps = 47/405 (11%)

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           G  +  E FV   G +FY+  +   +T          E    +     + +F + D++S 
Sbjct: 67  GRRLARERFVMPEGCTFYDLYDQRNATNVGEVINTTFEKIEDANRAKLQGVFRNIDYNSE 126

Query: 124 IARLEKAGLLYKICKNF------SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
            A L K     +  K F        ++L P  V +  V+ N YE+LI  F +   + A +
Sbjct: 127 -ANLGKTKDRNRRLKKFLEDLNDPRLDLRPSRVGNLDVIGNAYEYLIANFAAGAGKKAGE 185

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  L   L+          +P     + DP CG+G  L    N V        +
Sbjct: 186 FYTPPEVSELIAELV----------APQPGERICDPACGSGSLLIKCGNRVRWTSEDFSL 235

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +GQE+  ET A+    M +  ++   R +    +++   +  D  T  +F   +
Sbjct: 236 ------YGQEINGETWALAKMNMFLHGMDR-ARVEWGDTLREPKLIEDD--TTMKFEVVV 286

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF   KW   K A    H      RF  GLP  S     F+ H+     L     GR
Sbjct: 287 ANPPFSLDKWGY-KSAQSDPHN-----RFHRGLPPKSKADYAFISHMIETTTLE---SGR 337

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +V+    LF G A   E +IR+ L+E +L++A++ LP +LFF T I   + +    + 
Sbjct: 338 VGVVVPHGVLFRGGA---EGKIRQQLIEENLLDAVIGLPANLFFGTGIPAAILVFKRNRP 394

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           ++    V  I+A+  +   +N+ K R     +  R+I+D Y +RE
Sbjct: 395 DK---DVLFIDASREYADAKNQNKLR----PENVRKIVDTYKARE 432


>gi|307245102|ref|ZP_07527195.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254057|ref|ZP_07535904.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258513|ref|ZP_07540250.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853991|gb|EFM86203.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862982|gb|EFM94929.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867417|gb|EFM99268.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 515

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 202/478 (42%), Gaps = 73/478 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYAAWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI L  E  +K  GY  Y +  +  + + + ++  NL + +                 
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFE-NVVKNAHSNPNLNTELKEIFTAIESSATGYDSE 125

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           ++ K +F DFD +S   RL     +K   L  + +  +G+      D   D +  + YE 
Sbjct: 126 NDIKELFADFDTTSN--RLGNTVEDKNKRLTAVLQGVAGLPFGRFEDNQID-LFGDAYEF 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L 
Sbjct: 183 LISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLL 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D    H I       GQE+   T+ +    M +  +  D       +I  G T
Sbjct: 235 QAKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGDT 283

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F
Sbjct: 284 LLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPTLINDE-----RFAPAGVLAPKSKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 339 ILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++
Sbjct: 392 FGTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAEILKLF 442


>gi|53803793|ref|YP_114323.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
 gi|53757554|gb|AAU91845.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
          Length = 526

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 151/316 (47%), Gaps = 47/316 (14%)

Query: 112 KAIFEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           + +F + DF+S  A L KA      L  + ++F+ ++L P  V + V+ N Y +LI RFG
Sbjct: 133 EGVFRNIDFNSE-ANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSEDVIGNTYIYLIERFG 191

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  + A +F TP+ V  L  AL            PG    + DP+CG+G  L +A   V
Sbjct: 192 SDAGKKAGEFYTPKMVSRLLAALA--------NPRPG--DRICDPSCGSGSLLIEAAQWV 241

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDL 286
              GSH+         G+E+   T A+    M I   +       +  I+   TL S  L
Sbjct: 242 EAQGSHN-----YALFGEEVNGATWALARMNMFIHSKD-------AARIEWCDTLNSPAL 289

Query: 287 FTGKR---FHYCLSNPPFG-KKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMH 341
             G R   F+  ++NPPF   KW         EH + +   RF  G+P  S G   F+ +
Sbjct: 290 IEGDRLMKFNVVVANPPFSLDKW-------GAEHADHDRFNRFWRGVPPKSKGDWAFITN 342

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +  +  LP    GR A+V+    LF G A   E  IRR ++E +L++A+V LP +LF  T
Sbjct: 343 MIERA-LPRE--GRVAVVVPHGVLFRGGA---EGRIRRAMIEENLLDAVVGLPGNLFPTT 396

Query: 402 NIATYLWILSNRKTEE 417
           +I   + +L +R  E+
Sbjct: 397 SIPVAI-LLFDRAREK 411


>gi|294850846|ref|ZP_06791547.1| type I restriction enzyme M protein [Staphylococcus aureus A9754]
 gi|294822296|gb|EFG38764.1| type I restriction enzyme M protein [Staphylococcus aureus A9754]
          Length = 356

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 146/317 (46%), Gaps = 43/317 (13%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +H D   D ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D L      
Sbjct: 10  VHSDMEID-MLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL------ 62

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             R +YDPTCG+G  L              K   +    GQE    T+ +    ML+  +
Sbjct: 63  --RHVYDPTCGSGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV 110

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                R  + +I+   TL    F G  F   ++NPP+  KW  D      E  +G    +
Sbjct: 111 -----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----Y 161

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-E 383
           G   PK S     F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E
Sbjct: 162 GKLAPK-SKADFAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEE 213

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            + +EA++ LP ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  
Sbjct: 214 KNYLEAVIGLPANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNH 267

Query: 444 INDDQRRQILDIYVSRE 460
           ++D Q  +I+D Y  +E
Sbjct: 268 LSDAQVERIIDTYKRKE 284


>gi|163798238|ref|ZP_02192170.1| type I restriction-modification system, M subunit [alpha
           proteobacterium BAL199]
 gi|159176486|gb|EDP61069.1| type I restriction-modification system, M subunit [alpha
           proteobacterium BAL199]
          Length = 505

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 178/400 (44%), Gaps = 51/400 (12%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSS--TIARL 127
           FV   G SFY+   Y      +   R N+       ++ AK   +F + DF+S   + R+
Sbjct: 74  FVLPEGASFYDL--YEARNEANIGERINIALERIEDTNRAKLEGVFRNIDFNSEANLGRV 131

Query: 128 -EKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A +F TP  V 
Sbjct: 132 KDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGEFYTPSAVS 191

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L           +P    T+ DP CG+G  L  A   V   GS +        +G
Sbjct: 192 RLLAKLA----------APKPGDTICDPACGSGSLLIRAAEEV---GSEN-----FALYG 233

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE+   T A+    M +   ++  R +    +   + +  D     +F   ++NPPF   
Sbjct: 234 QEVNGATWALARMNMFLHAKDA-ARIEWCDTLNSPALVEGDHLM--KFDVVVANPPFSLD 290

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           KW  +    +      +  RF  G+P  S G   F+ H+   +E+     GR A+++   
Sbjct: 291 KWGAENADTD------QFKRFWRGIPPKSKGDYGFITHM---IEIARRQSGRVAVIVPHG 341

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERR 419
            LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + +    + +    E R
Sbjct: 342 VLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDRSREQGGANEAR 398

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             V  I+A+  +T     GK + ++++    ++L+ Y SR
Sbjct: 399 RDVLFIDASKEFTP----GKTQNVMDEAHIGKVLETYASR 434


>gi|329963228|ref|ZP_08300965.1| type I restriction-modification system, M subunit [Bacteroides
           fluxus YIT 12057]
 gi|328528924|gb|EGF55864.1| type I restriction-modification system, M subunit [Bacteroides
           fluxus YIT 12057]
          Length = 517

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 154/318 (48%), Gaps = 47/318 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM--IRTLYD 211
           ++ + YE++I +F +   + A +F TP++V  +   ++          S G   +R +YD
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV----------SIGHQRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A    A  G+   I      +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRA----ASIGNAVDI------YGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D+F   +F   ++NPPF  +W    D    + +  + GR  P   K 
Sbjct: 276 SNFKIENGDTLEWDVFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP--KKT 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
           +D +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI
Sbjct: 333 ADYA--FILHMIYHL----NEGGAMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + ++  +K  +    +  I+A+  +  ++ + K R+    +   
Sbjct: 384 IGLPANIFYGTSIPTCILVM--KKCRKEDDNILFIDASKEFEKVKTQNKLRK----EHID 437

Query: 451 QILDIYVSR-ENGKFSRM 467
           +I+D Y  R E  K+S +
Sbjct: 438 KIVDTYRERKEIEKYSHL 455


>gi|326334517|ref|ZP_08200728.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693286|gb|EGD35214.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 515

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 173/411 (42%), Gaps = 65/411 (15%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNA-------KAIFEDFDF 120
           K  GY  Y  S+  ++   + NT +NL + +A+       S N        K +F DFD 
Sbjct: 78  KTKGYFIY-PSQLFVNVAKNANTNSNLNTDLAAIFSAIESSANGYPSEADIKGLFADFDT 136

Query: 121 SSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +S   RL     EK   L  +    +G+     +     +  + YE LI  + +   +  
Sbjct: 137 TSN--RLGNTVEEKNKRLAAVVNGVAGLSFGDFENHQIDLFGDAYEFLISNYAANAGKSG 194

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP++V  L   L      AL  +S   +  +YDP CG+G  L  A  H  D     
Sbjct: 195 GEFFTPQNVSKLIAQL------ALLGQSS--VNKIYDPACGSGSLLLQAKKHFDDYQIEE 246

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FH 293
                    GQE+   T+ +    M +  +  D       NI  G TL    F  ++ F 
Sbjct: 247 GF------FGQEINHTTYNLVRMNMFLHNINYDKF-----NIALGDTLINPCFGDEKPFD 295

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPN 351
             +SNPP+   W    D            RF P   L   S     F++H  + L    +
Sbjct: 296 AIVSNPPYSVNWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVLHSLSYL----S 346

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRAAIV      + G A   E +IR++L++N+ +E ++ALP +LF+ T+IA  + +LS
Sbjct: 347 AKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNYVETVIALPPNLFYGTSIAVNILVLS 403

Query: 412 NRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             K + +    Q I+A+  D +    N      ++ DD    I+ I+  +E
Sbjct: 404 KHKPDTQ---TQFIDASGEDFFKKETN----NNVLTDDHIAHIVSIFADKE 447


>gi|284931718|gb|ADC31656.1| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. F]
          Length = 877

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 177/387 (45%), Gaps = 54/387 (13%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSG 142
           +ST  ++  R+ LE Y  SF D    IF+D      I +L     E++  ++ IC   + 
Sbjct: 111 VSTALNSFERSILEKYEESFKD----IFKDLQVG--IQKLGNTAYERSEAIWNICNLINK 164

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I +      D ++  +YE+LI  F +   + A +F TP +V  L + +  +    L   S
Sbjct: 165 IPITSKQDYD-ILGFVYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGLKNVS 223

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 +YDPT G+G  L      +     + KI      + QE+   T+ +    +L+ 
Sbjct: 224 ------IYDPTSGSGSLLITLGRELKKIDKNVKIQY----YAQEVIDTTYNITRMNLLMN 273

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            + S     ++   + G TL +D         +  KR    +SNPP+   W         
Sbjct: 274 DVHS-----VNMFAKCGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNT------- 321

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           E+K  +  RF  GL   S   + FL+H    LE      G   IVL    LF  R GS E
Sbjct: 322 ENKEND-PRFRYGLAPKSKSELAFLLHSLYHLE----DHGILTIVLPHGVLF--RGGS-E 373

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L+ +D I+AI+ LP+++FF T I T + +L   KT++ +  V  I+A+  +T  
Sbjct: 374 LQIRQNLISHDHIDAIIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFTK- 432

Query: 435 RNEGKKRRIINDDQRRQILDIYVSREN 461
             EG K ++ + D  R I D + +RE+
Sbjct: 433 --EGNKNKLQSSDIMR-IYDAFSARED 456


>gi|153805905|ref|ZP_01958573.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185]
 gi|149130582|gb|EDM21788.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185]
          Length = 506

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/445 (24%), Positives = 191/445 (42%), Gaps = 64/445 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           S   L +F+W  A  L G      + + I P    +R+    +       E Y+  GG  
Sbjct: 16  SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQF----EGYVCEGGIE 71

Query: 65  -SNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA----------- 111
            +N   +  V ++   + +         +G    +  +E++IA    N            
Sbjct: 72  YANAQAQELVIRIPDGAHWRDVRECTENVG----QRLVEAFIAIEQANPGEHADGRVIGG 127

Query: 112 -KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            + IF   D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  + 
Sbjct: 128 LEGIFGPKDGWTNKAKMPDH-IITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDA 186

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              A++F T R VV L   +L        +  PG   ++YDPTCG+GG L   ++ +   
Sbjct: 187 GNTAQEFYTNRTVVDLMAEIL--------QPRPG--ESIYDPTCGSGGMLVKCLDFLRKK 236

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G   +   +    GQE+   T A+    + +  +E     D S  I +  TL+   F   
Sbjct: 237 GEPWQGVKVF---GQEINALTSAIARMNLYLNGVE-----DFS--IVREDTLAYPAFVDG 286

Query: 290 ---KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              ++F   L+NPP+  K W+++         N + GR   G P  S     F+ H+ + 
Sbjct: 287 SKLRKFDIVLANPPYSIKTWDREA------FINDKWGRNFLGTPPQSKADYAFIQHILSS 340

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +    N  GR AI+L    L        E +IR+ L++NDLI+A++++  +LFF + +  
Sbjct: 341 M----NDHGRCAILLPHGVLNR----LIEKDIRQKLIQNDLIDAVISIGKNLFFNSPMEA 392

Query: 406 YLWILSNRKTEERRGKVQLINATDL 430
            + I  + K  +R+ K+ LI ATDL
Sbjct: 393 CILICRSNKPTDRKNKILLIKATDL 417


>gi|30022540|ref|NP_834171.1| Type I restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
 gi|29898098|gb|AAP11372.1| Type I restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
          Length = 468

 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 153/313 (48%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDV-VHLA-TALLLDPDDALFKESPGMIRTLYD 211
           V+ + YE LI +F SE  + A +F TP +V V +A  A +   D  LF        +++D
Sbjct: 172 VIGDAYEFLIGQFASEAGKKAGEFYTPHEVSVMMARIAAIGQEDKKLF--------SVFD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++    +H   P  +  HGQEL   T+ +    +++  ++ +  R 
Sbjct: 224 PTMGSGSLMLNIQNYI----NH---PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR- 275

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   P
Sbjct: 276 ----LRNGDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGKLAP 327

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A
Sbjct: 328 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDA 379

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LFF T+I T + IL  NR T +    V  I+A+  +   +N+ K  +    + 
Sbjct: 380 VIGMPANLFFGTSIPTTVIILKKNRATRD----VLFIDASKEFIKGKNQNKLFK----EH 431

Query: 449 RRQILDIYVSREN 461
             +I++ Y  RE+
Sbjct: 432 IDKIVETYKKRED 444


>gi|297568980|ref|YP_003690324.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924895|gb|ADH85705.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 538

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 192/447 (42%), Gaps = 64/447 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S    +W+ A+ L G  + +++  V+L    L+ +    E  +   RE      G  +D+
Sbjct: 27  SFEQTLWETADRLRGTVESSEYKHVVLSLIFLKFVSDKFEQRK---RELIAEGQGDYVDM 83

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAI---FEDFDFSS 122
             F  +    FY   E   ST+     ++++    ++ + +   N  A+     D  FS 
Sbjct: 84  VEFYTMKNV-FYLPEEARWSTIRKAAKQDDIAVRIDTALHTVEKNNPALRGALPDNYFSR 142

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               + K   L     N   +  H   V  RV    YE+ + +F +   +G  +F TP+ 
Sbjct: 143 LGLDVSKLAALIDSINNIDTVADHEQDVVGRV----YEYFLGKFAATEGKGGGEFYTPKC 198

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L  A +++P    F+        +YDP CG+GG    ++  V    SH      +  
Sbjct: 199 VVKL-IAEMIEP----FRGK------IYDPCCGSGGMFVQSVKFVE---SHRGSKKDISI 244

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGKRFHYCLSNPP 300
           +GQE    T+ +    + IR         ++ N+ +    T  KD     +  + ++NPP
Sbjct: 245 YGQEYTSTTYKLSKMNLAIR--------GIAANLGEAPADTFFKDQHPDLKADFIMANPP 296

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  K+W    +  +     G        +P   + +  +++H+ +KL    +  G A  V
Sbjct: 297 FNLKEWRAANELTDDPRWAGY------EVPPTGNANYAWILHMVSKL----SENGVAGFV 346

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-NRKTE-- 416
           L++  +      SGE  IRR L+ENDLI+ ++A+P  LF+ T I   LW ++ N+K +  
Sbjct: 347 LANGSMSTNT--SGEGLIRRKLIENDLIDCMIAMPGQLFYTTQIPVCLWFITRNKKAQRI 404

Query: 417 ---------ERRGKVQLINATDLWTSI 434
                    +RRG+   I+A ++ T I
Sbjct: 405 EGHSDSSHRDRRGETLFIDARNMGTMI 431


>gi|229129743|ref|ZP_04258710.1| Type I restriction-modification system, M subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228653659|gb|EEL09530.1| Type I restriction-modification system, M subunit [Bacillus cereus
           BDRD-Cer4]
          Length = 512

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 153/313 (48%), Gaps = 45/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDV-VHLA-TALLLDPDDALFKESPGMIRTLYD 211
           V+ + YE LI +F SE  + A +F TP +V V +A  A +   D  LF        +++D
Sbjct: 154 VIGDAYEFLIGQFASEAGKKAGEFYTPHEVSVMMARIAAIGQEDKKLF--------SVFD 205

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++     +H  P  +  HGQEL   T+ +    +++  ++ +  R 
Sbjct: 206 PTMGSGSLMLNIQNYI-----NH--PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR- 257

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               ++ G TL+KD  T +   F   L NPP+  KW  D   ++    +    R+G   P
Sbjct: 258 ----LRNGDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGKLAP 309

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A
Sbjct: 310 K-SKADFAFLLHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDA 361

Query: 390 IVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +P +LFF T+I T + IL  NR T +    V  I+A+  +   +N+ K  +    + 
Sbjct: 362 VIGMPANLFFGTSIPTTVIILKKNRATRD----VLFIDASKEFIKGKNQNKLFK----EH 413

Query: 449 RRQILDIYVSREN 461
             +I++ Y  RE+
Sbjct: 414 IDKIVETYKKRED 426


>gi|315634370|ref|ZP_07889657.1| type I restriction-modification system DNA-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
 gi|315476960|gb|EFU67705.1| type I restriction-modification system DNA-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
          Length = 515

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 201/484 (41%), Gaps = 87/484 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGGSNIDL- 69
           IW+ A D+ G     DF + +L     R         +E    +V   Y AF   N  + 
Sbjct: 15  IWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSV--DYSAFNDDNPIIA 72

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD------------NAKA 113
              E  +K  GY  Y  S+   + + + NT  NL + + S F+D            + K 
Sbjct: 73  AIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKSIFTDIENSATGYPSEQDIKG 131

Query: 114 IFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYEHL 162
           +F DFD +S     T+A  +K   L  + K  + ++       H D   D      YE L
Sbjct: 132 LFADFDTTSNRLGNTVA--DKNSRLAAVLKGVAELDFGDFEDNHIDLFGDA-----YEFL 184

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G  L  
Sbjct: 185 ISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGSLLLQ 236

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A          H I       GQE+   T+ +    M +  +  D       +I  G+TL
Sbjct: 237 AKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGNTL 285

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
               F   K F   +SNPP+  KW    D   +  E       RF P   L   S     
Sbjct: 286 MNPQFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFA 338

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +L
Sbjct: 339 FILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALAPNL 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  K + +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 392 FFGTSIAVNILVLSKHKPDTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 444

Query: 458 SREN 461
            +E+
Sbjct: 445 DKED 448


>gi|294793954|ref|ZP_06759091.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
 gi|294455524|gb|EFG23896.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
          Length = 531

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 154/311 (49%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V ++   ++    +    ++P    T+YDPT
Sbjct: 173 VIGDAYEYLIGEFAAGSGKKAGEFYTPQQVSNMMAQIVTIGQE----DTPSF--TVYDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +       P  +  HGQEL   T+ +    +++  + ++ +R   
Sbjct: 227 MGSGSLMLNVRKYLNN-------PDRVQYHGQELNVTTYNLARMNLILHEVNAEDQR--- 276

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             +  G TL+KD  T + + +   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 277 --LHNGDTLNKDWPTDEPYMFDSVVMNPPYSAKWSADPTFMD----DARFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGFYHLKT----SGTMAIVLPHGVLFRGAA---EGIIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +P +LFF T+I T + IL     + R G+ V  I+A++ +T  +N+ K    +  +  +
Sbjct: 383 GMPANLFFGTSIPTTVIILK----KNRPGRDVLFIDASNNFTKFKNQNK----LEPEHIK 434

Query: 451 QILDIYVSREN 461
           +I+D Y +RE+
Sbjct: 435 RIVDTYKNRES 445


>gi|309702143|emb|CBJ01458.1| putative type I methylase [Escherichia coli ETEC H10407]
          Length = 507

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H      L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHDSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFISHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  ++++   
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKA----GKNQNQLSEENIE 427

Query: 451 QILDIYVSREN 461
           +I+  Y   +N
Sbjct: 428 KIVKTYRDGDN 438


>gi|238755001|ref|ZP_04616349.1| Type I restriction-modification system methyltransferase subunit
           like protein [Yersinia ruckeri ATCC 29473]
 gi|238706705|gb|EEP99074.1| Type I restriction-modification system methyltransferase subunit
           like protein [Yersinia ruckeri ATCC 29473]
          Length = 534

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 190/450 (42%), Gaps = 69/450 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN--IDLESF 72
           +W  A  L G  + +++  V+L    L+ +    E  R     K L   G    +D++ F
Sbjct: 17  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKR-----KQLIDNGQEAFVDMDVF 71

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-----------DFDFS 121
            +     F+   E   S + +   +++    IA   D A +  E           D  FS
Sbjct: 72  YQQDNV-FFLPPEARWSFVKARAKQDD----IAVIIDTALSTIEKRNASLTGALPDNYFS 126

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                +++   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 127 RQGLEVKRLASLIDSIENIDTLANESDLTEEDLVGRVYEYFLGKFAASEGKGGGEFYTPK 186

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L  A +L+P              +YDP CG+GG    ++  +    SH      + 
Sbjct: 187 AVVTL-LAEMLEPYQG----------KIYDPCCGSGGMFVQSLKFIE---SHKGKSRDIA 232

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNP 299
            +GQEL   T+ +    + +R         LS N+ +    T   D     +  + ++NP
Sbjct: 233 IYGQELTSTTYKLAKMNLAVR--------GLSGNLGERAADTFFADQHPDLKADFIMANP 284

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PF  K W       E E  N    RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 285 PFNLKDWRN-----EAELTNDP--RFAGFRTPPTGNANYAWILHMLSKL----SEDGTAG 333

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-- 415
            VL++  + +    SGE EIR+ L+E+D IE ++ALP  LFF T I   LW +S  K   
Sbjct: 334 FVLANGSMSSNT--SGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKSKKAN 391

Query: 416 -----EERRGKVQLINATDLWTSIRNEGKK 440
                 +RRG+   I+A +L T +    K+
Sbjct: 392 PQYGYRDRRGETLFIDARNLGTMVSRTQKE 421


>gi|139474406|ref|YP_001129122.1| type I restriction-modification system M protein [Streptococcus
           pyogenes str. Manfredo]
 gi|134272653|emb|CAM30920.1| type I restriction-modification system M protein [Streptococcus
           pyogenes str. Manfredo]
          Length = 526

 Score =  110 bits (274), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 178/386 (46%), Gaps = 57/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D  ++      +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-SPGMIRTL 209
               + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E   GM  TL
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQKGM--TL 222

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           YDP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  +
Sbjct: 223 YDPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                ++++    TL  D  T +   F   L NPP+  KW     A      +     +G
Sbjct: 274 -----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYG 324

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE  
Sbjct: 325 VLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQG 376

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + 
Sbjct: 377 AIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMT 429

Query: 446 DDQRRQILDIYVSRENG-KFSRMLDY 470
           D   ++ILD Y SR+N  KFS +  +
Sbjct: 430 DSHIKKILDAYKSRDNSDKFSYLASF 455


>gi|21911180|ref|NP_665448.1| putative type I site-specific deoxyribonuclease hsdM modification
           subunit [Streptococcus pyogenes MGAS315]
 gi|28896556|ref|NP_802906.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes
           SSI-1]
 gi|21905392|gb|AAM80251.1| putative type I site-specific deoxyribonuclease hsdM modification
           subunit [Streptococcus pyogenes MGAS315]
 gi|28811810|dbj|BAC64739.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes SSI-1]
          Length = 526

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 177/385 (45%), Gaps = 55/385 (14%)

Query: 100 LESYIASFSD------NAKAIFEDFD-FSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           LES    F D      + + +FED D +S  +     ++   +  + K  + I+   + V
Sbjct: 112 LESLAQGFHDIEQNGEDFENLFEDIDLYSKKLGSTPQKQNQTIANVMKTLNEIDF--EAV 169

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI  F SE  + A +F TP+ V HL T ++        ++  GM  TLY
Sbjct: 170 DGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF----LGCEDQKGM--TLY 223

Query: 211 DPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP  G+G  L +A  +   +D  S++         GQE+   T+ +    M++  +  + 
Sbjct: 224 DPAMGSGSLLLNAKKYSNQSDTVSYY---------GQEINTSTYNLARMNMMLHGVAIE- 273

Query: 269 RRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               ++++    TL  D  T +   F   L NPP+  KW     A      +     +G 
Sbjct: 274 ----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYGV 325

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   
Sbjct: 326 LAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGA 377

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + D
Sbjct: 378 IDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMTD 430

Query: 447 DQRRQILDIYVSRENG-KFSRMLDY 470
              ++ILD Y SR+N  KFS +  +
Sbjct: 431 SHIKKILDAYKSRDNSDKFSYLASF 455


>gi|145628525|ref|ZP_01784325.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145639725|ref|ZP_01795327.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|144978995|gb|EDJ88681.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145271093|gb|EDK11008.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittII]
          Length = 515

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 202/494 (40%), Gaps = 95/494 (19%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW+ A D+ G     DF + +L  TL  R         S     Y+  G  ++D
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLG-TLFYRF-------ISENFANYIEGGDDSVD 60

Query: 69  LESF--------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD---- 109
             +F              +K  GY  Y  S+   + + + NT  NL + + + F+D    
Sbjct: 61  YSAFNDDAPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKNIFTDIENS 119

Query: 110 --------NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTV 150
                   + K +F DFD +S   RL     +K   L  + K  + ++       H D  
Sbjct: 120 ATGFPSEQDIKGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLF 177

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D      YE+LI  + +   +   +F TP+ V  L   + +             +  +Y
Sbjct: 178 GDA-----YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAM--------HGQTSVNKIY 224

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L  A          H I       GQE+   T+ +    M +  +  D   
Sbjct: 225 DPAAGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF- 277

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               +I  G+TL +  F   K F   +SNPP+  KW    D      +     RF P   
Sbjct: 278 ----DIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGV 328

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +
Sbjct: 329 LAPKSKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYV 381

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++AL  +LFF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++
Sbjct: 382 DAVIALAPNLFFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEE 434

Query: 448 QRRQILDIYVSREN 461
              QIL ++  +E+
Sbjct: 435 HIEQILKLFADKED 448


>gi|331017721|gb|EGH97777.1| N-6 DNA methylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 533

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 195/469 (41%), Gaps = 79/469 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES--- 71
           +W  A  L G     ++   +L    L+ +   L  T++ V +  LA   S + +E    
Sbjct: 10  LWDTANKLRGSVSAAEYKYPVLGLVFLKYV-SDLYDTQAGVIQDRLADPSSELYIEDAEL 68

Query: 72  -------FVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                  FV+   +      F+  +E    TL  +    N     A   D A  + E  +
Sbjct: 69  RAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANF----AQLLDKAMGLIESEN 124

Query: 120 FS------STIARLE-KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVS 171
            S         +RLE + G L ++ +  + ++  P     R V   +YE+ + +F     
Sbjct: 125 LSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLGQFALNEG 184

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HV 227
             A +F TP+ +V L   +L     A FK       T+YDP CG+GG    +      H 
Sbjct: 185 ARAGEFYTPKSLVSLLVEIL-----APFK------GTIYDPACGSGGMFVQSAKFKDAHA 233

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKD 285
              GS   +P     +GQE   ET  +C+  + +  L+         NI Q  GST + D
Sbjct: 234 KQLGSKGDLPI----YGQEKMAETRRLCLMNLAVHGLDG--------NIGQTYGSTFTND 281

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                R  Y L+NPPF    WE +K   +         R+  G+P   + +  +L H+  
Sbjct: 282 QHKTLRADYILANPPFNISDWEGEKLKGDP--------RWAHGIPPKGNANYAWLQHILA 333

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           +L    +  GRA +VL++  +   +  SGE +IR+ ++  D++E +VALP  LF  T I 
Sbjct: 334 RL----SSRGRAGVVLANGSMSTQQ--SGEDKIRQSMVIKDVVECMVALPGQLFSNTQIP 387

Query: 405 TYLWILSNRK------TEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             LW LS  K        +R  ++  I+A    TS R   K+     DD
Sbjct: 388 ACLWFLSKDKRIGPNGKTDRSSQILFIDARKA-TSGRISRKQVEFTEDD 435


>gi|300727763|ref|ZP_07061147.1| type I restriction-modification system, M subunit [Prevotella
           bryantii B14]
 gi|299774973|gb|EFI71581.1| type I restriction-modification system, M subunit [Prevotella
           bryantii B14]
          Length = 511

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 154/340 (45%), Gaps = 51/340 (15%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           G +  + ++ S  +L  +  P  +M + YE L+++F  +    A +F TPR VV L   +
Sbjct: 151 GKIRDLIEHLSTRKLGNNDYPTDLMGDAYEILLKKFADDSKAKAGEFYTPRSVVQLLVRI 210

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQE 246
           L DP        PG   ++YDP CG+GG L +A++H+      CG+           GQE
Sbjct: 211 L-DP-------QPG--ESVYDPACGSGGMLIEAVHHMNHSNLCCGN---------IFGQE 251

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGK--RFHYCLSNPPFG 302
                 A+    + +             NI QG TL   K L  G+  +F   ++NPPF 
Sbjct: 252 KNVVNSAIAKMNLFLHGASD-------FNIMQGDTLRNPKILQGGEVAKFDCVIANPPFS 304

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            KKW         E  + + GR   G P  S G   ++ H+   +     G GR A+V+ 
Sbjct: 305 LKKWGS------VEWSSDKYGRNIWGTPSDSCGDYAWIQHMIASM---APGKGRMAVVMP 355

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G+    E  IR  L+++D++EA+V L   LF+ T ++    I+   K      +
Sbjct: 356 QGVLFRGKE---EGHIREKLVKSDMVEAVVTLGDKLFYGTGLSPCFLIIRKMKPAAHSAR 412

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + +I+ T + T  R     + I+      ++ ++YV+ EN
Sbjct: 413 ILMIDGTKILTPKR----AQNILEQKDVDRLFELYVNYEN 448


>gi|258593067|emb|CBE69378.1| N-6 DNA methylase [NC10 bacterium 'Dutch sediment']
          Length = 640

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 201/483 (41%), Gaps = 78/483 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK A  + G+     F   ILP   ++RL    E   + + E Y      N + 
Sbjct: 124 SMEGLLWKAACSIRGEKDAPKFKDYILPLVFIKRLSDVFEDEMAGLTETYEG----NEER 179

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE------------------SYIASFSDNA 111
              V  A +          +T    ++R   E                    IA  + + 
Sbjct: 180 ARTVLEADHGVVRFYIPPQATWPVVSSRQMFEWPEGKRPKTLGEQLTTTVRAIARLNPSL 239

Query: 112 KAIFEDFDFSS--TIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRR 165
           + + +  D++      R    G L ++ +  S     + LH D  PD  +   YE+L+R+
Sbjct: 240 QGVIDIVDYNEIRNGEREISDGALSRLIELLSDPRYRMGLH-DVEPD-FLGRAYEYLLRK 297

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     + A +F TP++V  L   L+           P     + DP CG+GG L     
Sbjct: 298 FAEGQGQSAGEFFTPKEVGWLIAYLM----------RPKQGEEVNDPCCGSGGLLIKC-- 345

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +   G   +I   L  +GQEL   + A+    M++  +E +        I +G++++  
Sbjct: 346 ELVLKGQEEEIARPLRLYGQELTGSSFAIARMNMVLHDMEGE--------IVRGNSMANP 397

Query: 286 LF----TGKRFHYCLSNPPFGKKWEKDK-DAVEKEH----KNGELGRFGPGLPKISDGSM 336
            F    + +RF   ++NP     W +D  D    E+    +  E G F P     S    
Sbjct: 398 KFLDGSSLRRFDIVVTNP----MWNQDNFDPASYENDPFERFVERGGFAPA----SSADW 449

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVAL 393
            +L H+   L    N  GRAA+V+ +     G    GE++   IRRW ++ D IE ++ L
Sbjct: 450 AWLQHVHASL----NDAGRAAVVIDTGAASRGSGSQGENKEKTIRRWFVDRDAIEGVILL 505

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T  A  + +L+ +K + R+G+V LINA+  +     +G+ +  I D   ++I 
Sbjct: 506 PDNLFYNTTAAGIIILLNRQKAKGRQGRVILINASTEF----EKGRPKNFIPDASVKKIA 561

Query: 454 DIY 456
           + +
Sbjct: 562 EAF 564


>gi|237807947|ref|YP_002892387.1| type I restriction-modification system, M subunit [Tolumonas
           auensis DSM 9187]
 gi|237500208|gb|ACQ92801.1| type I restriction-modification system, M subunit [Tolumonas
           auensis DSM 9187]
          Length = 805

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 164/348 (47%), Gaps = 55/348 (15%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V  + + ++
Sbjct: 115 LSKLIGIFEGLDLSANRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSRILSKVI 174

Query: 192 -LD---PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            +D   P DA          T+YDPTCG+G  L  A +  A+ G        L  +GQE+
Sbjct: 175 GIDASTPQDA----------TVYDPTCGSGSLLLKASDE-AERG--------LSIYGQEM 215

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG 302
           +  T A+    M++         + +  I +G+TL    +       K F + ++NPPF 
Sbjct: 216 DNATSALARMNMILHN-------NATAKIWKGNTLVDPQWKEANGQLKTFDFAVANPPFS 268

Query: 303 KK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            K W    +  E         RF  G+P   +G   FL+H+   L+      G+ A++L 
Sbjct: 269 NKNWTSGLNPNEDP-----FDRFTWGIPPEKNGDYTFLLHIIKSLK----STGKGAVILP 319

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G A   E+ IR  LL+   I+ I+ LP +LF+ T I   + ++   +   R+G 
Sbjct: 320 HGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIVIDKAQAHSRKG- 375

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
           + +I+A+        +G K R+   D  + ++D++  + E  ++SRM+
Sbjct: 376 IFMIDAS---KGFIKDGNKNRLRAQDIHK-VVDVFTKQLEQPRYSRMV 419


>gi|322513993|ref|ZP_08067068.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322120219|gb|EFX92177.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 533

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 200/493 (40%), Gaps = 94/493 (19%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW+ A D+ G     DF + +L  TL  R         S     Y+  G  +++
Sbjct: 28  AELQRRIWQIANDVRGSVDGWDFKQYVLG-TLFYRF-------ISENFANYIEAGDESVN 79

Query: 69  LESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD----- 109
                            +K  GY  Y  S+   + + + NT  NL S +   FSD     
Sbjct: 80  YAKLPDEIITPEIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNSELKQIFSDIENSA 138

Query: 110 -------NAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL------HPDTVP 151
                  + K +F DFD +S     T+A  +K   L  + K  + ++       H D   
Sbjct: 139 TGYPSEQDIKGLFADFDTTSNRLGNTVA--DKNSRLAAVLKGVAELDFGDFEDNHIDLFG 196

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D      YE LI  + +   +   +F TP+ V  L   L L   D + K        +YD
Sbjct: 197 DA-----YEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYD 243

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L  A          H I       GQE+   T+ +    M +  +  D    
Sbjct: 244 PAAGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-- 295

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G+TL    F   K F   +SNPP+  KW    D      +     RF P   L
Sbjct: 296 ---DIALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGVL 347

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E
Sbjct: 348 APKSKADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVE 400

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++AL  +LFF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++ 
Sbjct: 401 TVIALAPNLFFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEH 453

Query: 449 RRQILDIYVSREN 461
             QIL ++  +E+
Sbjct: 454 IEQILKLFADKED 466


>gi|297562021|ref|YP_003680995.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846469|gb|ADH68489.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 549

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 200/481 (41%), Gaps = 65/481 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           TGS   L + +WK A+ L G     ++   +L    L+ +  A    R  + ++    GG
Sbjct: 13  TGSK-DLKDTLWKAADKLRGSMDAAEYKHFVLGLIFLKYVSDAFAERRVHIEKELREEGG 71

Query: 65  -SNID----LESFVKVAGYSFY---------NTSEYSLSTLGSTNTRNNLESYIASFSDN 110
            S  D    LE   +  GY  +           +E + +  G       L+  + + ++ 
Sbjct: 72  YSETDIAETLEDREEYIGYGVFWVPQAARWEAIAERAKTGAGEDGVGKLLDDAMKAVANT 131

Query: 111 AKAIFEDFD---FSSTIARLEKAGLLYKICKNFS-GIELHPDT---VPDRVMSNIYEHLI 163
             ++        F++      + G L  +      G +L PD        V+  +YE+ +
Sbjct: 132 NPSLRNSLPQGLFNARGVDERRLGELVDLINRIGFGDQLDPDGNRRSARDVLGEVYEYCL 191

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F         ++ TP  VV L  A+L           P     +YDP CG+GG    A
Sbjct: 192 GKFALAEGRRGGEYYTPACVVELIVAML----------EPQKGERVYDPACGSGGMFVQA 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V   G + +   +   +GQEL   T  +    + I  + +D         +   T  
Sbjct: 242 EKFVESHGGNARDIAV---YGQELNQNTWRLAKMNLAIHGISAD------LGTKWDDTFH 292

Query: 284 KDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            D     R H  ++NPPF    W  D+  ++         R+  G+P + + +  +L H+
Sbjct: 293 NDHHPDLRAHVVMANPPFNISDWGGDRLVMDP--------RWQWGVPPVGNANYAWLQHM 344

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           A KL   P  G RA IVL++  + + +  SGE +IRR ++E+ L+  +VALP  LF  T 
Sbjct: 345 AYKL--APKAG-RAGIVLANGSMSSKQ--SGEGDIRRAMVEDGLVACMVALPGQLFRSTQ 399

Query: 403 IATYLWILS-------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           I   +WIL+        R + +R G+V  I+A +L   +    K+   + +D+ +QI + 
Sbjct: 400 IPACVWILAKDRGAKGGRGSIDRTGQVLFIDARELGEMVTRTEKQ---LTEDEIKQISNT 456

Query: 456 Y 456
           +
Sbjct: 457 F 457


>gi|242243195|ref|ZP_04797640.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis W23144]
 gi|242233349|gb|EES35661.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis W23144]
          Length = 518

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 48/358 (13%)

Query: 114 IFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSE 169
           +F D D +ST        +  L+ K+  N + +  +H D   D ++ + YE+LI +F + 
Sbjct: 137 LFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEID-MLGDAYEYLIGQFAAN 195

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   ++           P + + +YDPTCG+G  L   +   AD
Sbjct: 196 AGKKAGEFYTPQQVSKILAKIVT-------TNKPNL-KNVYDPTCGSGSLLL-RVGREAD 246

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              ++         GQE    T  +    ML+  +     +     I    TL    F G
Sbjct: 247 VRFYY---------GQEYNNTTFNLARMNMLLHDVNYTRFK-----IDNDDTLENPAFRG 292

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++F   ++NPP+  KW  D   ++ E  +G    +G   PK S     F+ H+ + L+  
Sbjct: 293 EKFDAVVANPPYSAKWSADPSFLDDERFSG----YGKLAPK-SKADFAFIQHMIHYLD-- 345

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLW 408
               G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I T + 
Sbjct: 346 --DNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGTSIPTSIL 400

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           +   +K  E    V  I+A+  +     +GK +  + D+   +I++ Y +RE   KFS
Sbjct: 401 VF--KKCREDSDNVLFIDASQSF----EKGKNQNHLTDEDVDKIVETYRNRETIDKFS 452


>gi|255011914|ref|ZP_05284040.1| N-6 DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313149748|ref|ZP_07811941.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138515|gb|EFR55875.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 497

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 189/464 (40%), Gaps = 87/464 (18%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E TG A  L NF+++    + G     +F   I P    +R+    +       E  ++ 
Sbjct: 9   ELTG-AQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYD---EETEEALISS 64

Query: 63  GG-----SNIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYIASF 107
           GG     S  +   FV   G  +    E +   LG+              + L   ++ F
Sbjct: 65  GGDKEYASLPEQHRFVIPDGCHWQEVRERT-ENLGAAIVGAMRQIEIANPDTLYGVLSMF 123

Query: 108 SDNA---KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           S      KAI  D      I  L K  L  K               P  +M + YE L++
Sbjct: 124 SSQKWTNKAILNDSKIRDLIEHLSKRKLGNK-------------DYPADLMGDAYEILLK 170

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  +    A +F TPR VV L   +L DP        PG   T+YDP CG+GG L +A+
Sbjct: 171 KFADDSKAQAGEFYTPRSVVRLLVHIL-DP-------KPG--ETVYDPACGSGGMLIEAI 220

Query: 225 NHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSK 274
            ++ D    CGS           GQE      A+    + +        ++ D  RD   
Sbjct: 221 RYMHDDSLCCGS---------IFGQEKNVVNAAIAKMNLFLHGASDFNVMQGDTLRD--P 269

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I QG  ++K       F   ++NPPF  + W     + +K  +N        G P  S 
Sbjct: 270 KILQGGNIAK-------FDCVIANPPFSLENWGATGWSSDKYKRNIY------GTPSDSC 316

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G   ++ H+   +    +G GR A+V+    LF G   + E+EIR+ L+E+DLIEA+V L
Sbjct: 317 GDYAWIQHMICSMS---SGKGRMAVVMPQGILFRG---NQEAEIRKQLVESDLIEAVVTL 370

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
              LF+ T ++    I+   K     G++ +I+ + + T  R +
Sbjct: 371 GDKLFYGTGLSPCFLIIRRMKPAHHSGRILMIDGSKILTQKRAQ 414


>gi|213962057|ref|ZP_03390322.1| type I restriction-modification system, M subunit [Capnocytophaga
           sputigena Capno]
 gi|213955410|gb|EEB66727.1| type I restriction-modification system, M subunit [Capnocytophaga
           sputigena Capno]
          Length = 510

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 58/382 (15%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L+ L   N R+ L +   S S N++A+F       T  R E   +L K+  +F  ++L P
Sbjct: 103 LTALEEAN-RSKLTNVFRSISFNSEAVF-----GPTKQRNE---ILKKLLTDFLNLDLKP 153

Query: 148 DTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +  + V+ + YE+LI  F  E  + A +F TP +V  L   L+          +P   
Sbjct: 154 SHLAGNDVIGDSYEYLIAHFAGEAGKKAGEFYTPAEVSTLLAKLV----------APKAG 203

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             + DP CG+G  L      V   G ++ +      +GQE    T A+C+  M +   E 
Sbjct: 204 DRIADPACGSGSLLIKVAKEVQ--GKNYSL------YGQENNGSTWALCLMNMFLH--EQ 253

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK----RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL 321
           D     + NI  G TL+           +F   ++NPPF   KW  +  A +        
Sbjct: 254 D-----AANITWGDTLNHPQLIENDALMKFDVVVANPPFSLDKWGVENAASDPYQ----- 303

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RF  G+P  + G   F+ H+   +E      GR  +++    LF G   S E  IR+ L
Sbjct: 304 -RFHRGIPPKTKGDYAFISHM---IETTHETNGRVGVIVPHGVLFRG---SSEKTIRQQL 356

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E +L+EA++ LP +LF+ T+I   + I +  K       V  I+A+  + S    GK +
Sbjct: 357 IEENLLEAVIGLPANLFYGTSIPAAILIFNRAKGANT--DVLFIDASKAYES----GKNQ 410

Query: 442 RIINDDQRRQILDIYVSRENGK 463
             + D+    I+ +Y + +  K
Sbjct: 411 NHLRDEDISHIVSVYQNYKKAK 432


>gi|319744117|gb|EFV96490.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus agalactiae ATCC 13813]
          Length = 501

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 152/334 (45%), Gaps = 44/334 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L ++   F+ I +        ++   YE+ + +F +   +   +F TP  +V     +L
Sbjct: 131 VLGEVVDIFTNINMFAHGNEKDLLGRTYEYCLEQFAAYEGKNGGEFYTPTSIVKTIVEIL 190

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                   K   G +   YDP CG+GG    +   V +   H      L  +GQE   +T
Sbjct: 191 --------KPFNGRV---YDPACGSGGMFVQSETFVEN---HSGNINNLSIYGQEANADT 236

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK- 309
             +    M IR +E +          Q  T   DL    +  Y ++NPPF  KKW  DK 
Sbjct: 237 WKMAKINMAIRGIEPN------FGPHQADTFIDDLHPTLKADYIMANPPFNLKKWGADKL 290

Query: 310 -DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            D V          R+  G P  S+ +  ++ H+ +   L PNG  +  +VL++  L + 
Sbjct: 291 VDDV----------RWKYGTPPDSNANYAWIQHMIH--HLAPNG--KIGLVLANGSLSST 336

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           +  SGE +IR+ ++E+DL+E IVALP  LF+   I   LW +S  K ++++GK   I+A 
Sbjct: 337 Q--SGEGDIRKAIIEDDLVEGIVALPAQLFYSVTIPACLWFIS--KNKKQKGKTVFIDAR 392

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +L   +    +K R   DD  ++I   + + + G
Sbjct: 393 NLGHMV---DRKHRDFTDDDIQKIAKTFEAFQEG 423


>gi|227505724|ref|ZP_03935773.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum
           ATCC 6940]
 gi|227197692|gb|EEI77740.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum
           ATCC 6940]
          Length = 543

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 110/476 (23%), Positives = 198/476 (41%), Gaps = 72/476 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  ++L    L+ +  A +  R+ +R    A G    D E
Sbjct: 22  LKDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRAELR----AEGEERGDSE 77

Query: 71  SFVK-----VAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            +++     +  Y   N   + +  +   T  R+N +   A      ++I +  D +   
Sbjct: 78  EYIQEDLEDIDAYREKNV--FWVDPIARWTFLRDNSKGKSADAGQEYQSIGKLIDNAMKQ 135

Query: 125 ARLEKAGLLYKICKNFSG-----------IELHPDTV-----PDR---VMSNIYEHLIRR 165
             L+   LL  +  NF+            I+L   T      P+R   ++  +YE+ + +
Sbjct: 136 LMLDNESLLGTLPTNFASESVDQRRLGELIDLFSTTRFTAEGPERARDLLGEVYEYFLEK 195

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV     +L           P   R +YDP CG+GG    A  
Sbjct: 196 FARAEGKRGGEFYTPRPVVRTLVEIL----------EPTQGR-VYDPCCGSGGMFVQAEK 244

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +    +  K    L  +GQEL   T  +    + I  + S          +   T ++D
Sbjct: 245 FLE---TTEKDRTALAIYGQELNERTWRMAKMNLAIHAISS-----AGLGERWADTFARD 296

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +   K+  Y ++NPPF  K W           +N E  R+  G+P   + +  ++ H+ +
Sbjct: 297 IHPDKQMDYVMANPPFNIKDW----------SRNEEDTRWKYGVPPKRNANFAWMQHIIS 346

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL   P G   A +V+++  + +    SGE +IR+ ++E+D++  ++ALP  LF  T I 
Sbjct: 347 KL--TPQG--EAGVVMANGTMTSN--SSGEGDIRKAMVEDDIVSCVIALPAQLFRGTQIP 400

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDDQRRQILDIY 456
             +W  +  K    +G +   N   L+   R  G    +  R  +D+  ++I D Y
Sbjct: 401 VCVWFFAKDKKAGSKGTIDRTNQV-LFIDARELGHMIDRTERTFSDEDIQKIADTY 455


>gi|163790646|ref|ZP_02185074.1| type I restriction-modification system methyltransferase subunit
           [Carnobacterium sp. AT7]
 gi|159874094|gb|EDP68170.1| type I restriction-modification system methyltransferase subunit
           [Carnobacterium sp. AT7]
          Length = 540

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 147/311 (47%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F SE  + A +F TP+ V  L T ++L       KE+     ++YDPT
Sbjct: 177 VLGDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQG-----KENQKGF-SVYDPT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +  +       P  +   GQEL   T+ +    M++  + +      +
Sbjct: 231 MGSGSLLLNAKKYSNE-------PGTISYFGQELNTSTYNLARMNMILHGVST-----AN 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +++    TL +D  T +   F   L NPP+   W  DK  +E    +     +G   PK 
Sbjct: 279 QDLHNADTLDQDWPTEEPTNFDAVLMNPPYSANWSADKGFLE----DVRFSTYGVLAPK- 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G    GE +IR+ LLEN  I+ ++
Sbjct: 334 SKADFAFLLHGYYHLK----DSGVMAIVLPHGVLFRG---GGEGKIRKVLLENGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP ++FF T+I T + IL  NR T++    V  I+A+  +   +N    +  + D+   
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRSTKD----VLFIDASQGFEKSKN----QNTLTDEHID 438

Query: 451 QILDIYVSREN 461
            IL  +  REN
Sbjct: 439 TILKAHSKREN 449


>gi|303244599|ref|ZP_07330932.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanothermococcus okinawensis IH1]
 gi|302485025|gb|EFL47956.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanothermococcus okinawensis IH1]
          Length = 539

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 162/344 (47%), Gaps = 53/344 (15%)

Query: 128 EKAGLLYKICKNFSG---IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           EK G L  +  N +    IE   +++ D V   IY + +R F  ++ +   +F TP  +V
Sbjct: 146 EKLGALLDLFNNINYKEFIENKDESIGD-VFGTIYGYFMRNFSQKLGQKGGEFFTPECIV 204

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+ +P          +   +YDP CG+GG    +   V +   +     + + +G
Sbjct: 205 KLLVELV-EP----------LRGRIYDPACGSGGMFVQSSKFVKEYLKNGNGIDLAI-YG 252

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL      +C   + I RL  D        I+QG TLS D     +  Y ++NPPF  K
Sbjct: 253 QELNSSNVRICKMNLAIHRLSHD-------QIKQGDTLSNDKHRDLKADYIITNPPFNYK 305

Query: 305 WEKDKDAVEKEHKNGELGRFGPGL-------PKISDGSMLFLMHLANKLELPPNGGGRAA 357
            + D+  +E     G++ RF  G+        K  + + L++ H    L    +  G AA
Sbjct: 306 -DYDQKVLE-----GDV-RFPYGIVPKKAENAKSGNANFLWIQHFIYHL----SDNGIAA 354

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL----SNR 413
            ++++  L    AG  E EIR+ ++E  +++ I++LP  +F+ T I   +W++     N 
Sbjct: 355 FIMANGSL---SAGGKEGEIRKKIIEEGIVDCIISLPNKMFYTTQIPACIWVIDKNKENG 411

Query: 414 KTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456
           +   R+ +   I+A +++T + RN+ +     +D+Q ++I D+Y
Sbjct: 412 RFRSRKWETLFIDAREIYTPVARNQNE----FSDEQIKKIADVY 451


>gi|49257053|dbj|BAD24842.1| HsdM protein [Staphylococcus aureus]
          Length = 504

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 39/282 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ I +F S   + A +F TP  +V L   ++           P   R +YDP 
Sbjct: 147 VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI----------EPYKGR-IYDPC 195

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V     H      +  +GQE  P T  +    + IR +++D      
Sbjct: 196 CGSGGMFVQSERFVE---KHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGE--- 249

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   DL  G +  Y L+NPPF    W +++   +         R+  G+P   
Sbjct: 250 ---RNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY--------RWQFGIPPTG 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   PNG   A  VL++  +    +   E EIR+ L+E DL+E IV 
Sbjct: 299 NANYAWIEHMISKL--APNG--IAGFVLANGSM--STSNKDELEIRKNLIEQDLVECIVT 352

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDL 430
           LP  LF+ T I   LW +SN K +    ERR ++  I+A ++
Sbjct: 353 LPGQLFYSTPIPVCLWFISNNKGQNGKKERRNEILFIDAREI 394


>gi|238019005|ref|ZP_04599431.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748]
 gi|237864489|gb|EEP65779.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748]
          Length = 531

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  +   ++    +    ++P    T+YDPT
Sbjct: 173 VIGDAYEYLIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQE----DTPSF--TVYDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +       P  +  HGQEL   T+ +    +++  + ++ +R   
Sbjct: 227 MGSGSLMLNVRKYLNN-------PDRVQYHGQELNVTTYNLARMNLILHEVSAEDQR--- 276

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             +  G TL+KD  T + + +   + NPP+   W  D   ++    +    R+G   PK 
Sbjct: 277 --LHNGDTLNKDWPTDEPYMFDSVVMNPPYSANWSADPTFMD----DARFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFLLHGFYHLKT----SGTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +P +LFF T+I T + IL     + R+G+ V  I+A++ +T  +N+ K    +  +  +
Sbjct: 383 GMPANLFFGTSIPTTVIILK----KNRKGRDVLFIDASNDFTKFKNQNK----LEPEHIK 434

Query: 451 QILDIYVSREN 461
           +I+D Y +RE+
Sbjct: 435 RIVDTYKNRES 445


>gi|255690135|ref|ZP_05413810.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260624419|gb|EEX47290.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 497

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 190/464 (40%), Gaps = 87/464 (18%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E TG A  L NF+++    + G     +F   I P    +R+    +       E  ++ 
Sbjct: 9   ELTG-AQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYD---EETEEALISS 64

Query: 63  GG-----SNIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYIASF 107
           GG     S  +   FV   G  +    E +   LG+              + L   ++ F
Sbjct: 65  GGDKEYASLPEQHRFVIPDGCHWQEVRERT-ENLGAAIVGAMRQIEIANPDTLYGVLSMF 123

Query: 108 SDNA---KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           S      KAI  D      I  L K  L  K               P  +M + YE L++
Sbjct: 124 SSQKWTNKAILNDSKIRDLIEHLSKRKLGNK-------------DYPADLMGDAYEILLK 170

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  +    A +F TPR VV L   +L DP        PG   T+YDP CG+GG L +A+
Sbjct: 171 KFADDSKAQAGEFYTPRSVVRLLVHIL-DP-------QPG--ETVYDPACGSGGMLIEAI 220

Query: 225 NHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSK 274
            ++ D    CGS           GQE      A+    + +        ++ D  RD   
Sbjct: 221 RYMHDDSLCCGS---------IFGQEKNVVNAAIAKMNLFLHGASDFNVMQGDTLRD--P 269

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I QG  ++K       F   ++NPPF  + W   + + +K  +N        G P  S 
Sbjct: 270 KILQGGNIAK-------FDCVIANPPFSLENWGATEWSSDKYKRNIY------GTPSDSC 316

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G   ++ H+   +    +G GR A+V+    LF G   + E+EIR+ L+E++LIEA+V L
Sbjct: 317 GDYAWIQHMICSMS---SGKGRMAVVMPQGILFRG---NQEAEIRKQLVESNLIEAVVTL 370

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
              LF+ T ++    I+   K     G++ +I+ + + T  R +
Sbjct: 371 GDKLFYGTGLSPCFLIIRRMKQAHHSGRILMIDGSQILTQKRAQ 414


>gi|294794794|ref|ZP_06759929.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
 gi|294454156|gb|EFG22530.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
          Length = 510

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 182/428 (42%), Gaps = 59/428 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E      R + L   G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFER-----RYEELIKEGDGFENDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAI-FEDFDFSSTIAR------ 126
                F+   E   ST+ S      +   I    DNA +AI  E+    + + +      
Sbjct: 70  AEENIFFVPEEARWSTIASAAHTPEIGLVI----DNAMRAIEKENTTLKNVLPKNYASPD 125

Query: 127 LEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           L+K  +L ++   F+  +++        ++   YE+ I +F S       +F TP  +V 
Sbjct: 126 LDKR-VLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGTKGGEFYTPSSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
              ++L           P     +YDP CG+GG    +   V    +H      +  +GQ
Sbjct: 185 TIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSGNRGTISVYGQ 231

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KK 304
           E   +T  +    M IR +      D +    Q  T   DL    +  + ++NPPF    
Sbjct: 232 ESNADTWKMAKMNMAIRGI------DANFGPYQADTFFNDLHKTLKADFIMANPPFNLSN 285

Query: 305 W--EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           W  EK KD V          R+  GLP   + +  ++ H+ +   L PN  G+  +VL++
Sbjct: 286 WGQEKLKDDV----------RWKYGLPPAGNANYAWIQHMIH--HLGPN--GKIGLVLAN 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L      SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++  K ++++GK 
Sbjct: 332 GAL--SSQSSGEGEIRRRIIEDDLIEGIVALPTQLFYSVTIPVTLWFIT--KCKKQKGKT 387

Query: 423 QLINATDL 430
             I+A  +
Sbjct: 388 LFIDARKM 395


>gi|238923269|ref|YP_002936784.1| type I restriction-modification system methylation subunit
           [Eubacterium rectale ATCC 33656]
 gi|238874943|gb|ACR74650.1| type I restriction-modification system methylation subunit
           [Eubacterium rectale ATCC 33656]
          Length = 533

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 150/310 (48%), Gaps = 40/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F SE  + A +F TP+ V  + T + +   + +     G+  ++YDP 
Sbjct: 175 ILGDAYEYLIGQFASETGKKAGEFYTPQAVSKILTRIAITGQENV----KGL--SIYDPC 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +     ++ K       +GQEL   T+ +    M +  + ++     +
Sbjct: 229 MGSGSLLLNAKRYYKGDTNYIKY------YGQELNMSTYNLARMNMFLHDVAAE-----N 277

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +N+  G TL  D  TG+   FH  L NPP+  KW      ++ E        +G   PK 
Sbjct: 278 QNLHHGDTLDADWPTGEETDFHMVLMNPPYSAKWSAASGFLQDER----FSEYGVLAPK- 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++
Sbjct: 333 SKADYAFLLHGLYHLK----SNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP +LF+ T+I T + +L     + R G+ V  I+A+  +     +GKK+  ++D+   
Sbjct: 386 GLPANLFYNTSIPTCIVVLK----KHRDGRDVLFIDASKKFI----KGKKQNEMSDEHID 437

Query: 451 QILDIYVSRE 460
           +++D+Y  RE
Sbjct: 438 EVMDLYNRRE 447


>gi|146305600|ref|YP_001186065.1| type I restriction-modification system, M subunit [Pseudomonas
           mendocina ymp]
 gi|145573801|gb|ABP83333.1| type I restriction-modification system, M subunit [Pseudomonas
           mendocina ymp]
          Length = 908

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 211/482 (43%), Gaps = 78/482 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L N +    +DL G+   +++ + I     L+R     +  R  +R++  A G S+ D
Sbjct: 9   ARLENLLLTACDDLRGNMDASEYKEYIFGMLFLKRASDLFDQRRDEIRKEGKAAGLSDDD 68

Query: 69  LESFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA------------- 111
           +++ +    + +G  F+   E +    G  + + N+   +    +N              
Sbjct: 69  IKANLEDPDQYSGKYFF-VPERARWNDGWVDEKWNVHPALKHVKENVGTALNKALEALEE 127

Query: 112 ------KAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEH 161
                 + + +  +F+  I +  L+   L+    +NF  I L  +    PD ++   YE 
Sbjct: 128 ANPEALQDVLKHINFNKKIGQNTLDDDTLV-NFIQNFEKIPLRDEDFEFPD-LLGTAYEW 185

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI+ F     + A +F TP +VV +   +  DP + +         ++YDPT G+GG L 
Sbjct: 186 LIKHFADSAGKKAGEFYTPAEVVRICVEIC-DPQEDM---------SVYDPTVGSGGMLI 235

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL------ESDPRRDLSKN 275
            A +++ +CG+       L  +GQE    T ++C   ML+  +      + D  R+    
Sbjct: 236 QARDYLRECGAD---AAELALYGQEKMGTTWSICKMNMLLHGISHAVIRQQDTLREPQHQ 292

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDG 334
            + G+ +        RF   L+NPPF + +      ++K+ K+   GRF   +P K    
Sbjct: 293 AEDGNLM--------RFDRVLANPPFSQNY------IKKDIKHP--GRFPVWMPEKGKKA 336

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            ++F+ H+   L+      GR A V+    LF G   + E E R++ ++   +EA++ LP
Sbjct: 337 DLMFVQHMLAVLK----HDGRMACVMPHGVLFRG---AEEREARKYFIDRGYLEAVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           ++LF+ T I   + +L+     ER+  V  IN    +     EGK +  +  +   +I+ 
Sbjct: 390 SNLFYGTGIPACILVLNKAGAAERK-HVLFINGDREY----REGKAQNYLRPEDIDKIVH 444

Query: 455 IY 456
            Y
Sbjct: 445 AY 446


>gi|153805904|ref|ZP_01958572.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185]
 gi|149130581|gb|EDM21787.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185]
          Length = 508

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 52/348 (14%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           G +  + ++ S   L  +  P  +M + YE L+++F  +    A +F TPR VV L   +
Sbjct: 148 GKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGEFYTPRSVVSLLVRI 207

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQE 246
           L DP        PG   T+YDP CG+GG L +A+ H+      CGS           GQE
Sbjct: 208 L-DP-------KPG--ETVYDPACGSGGMLIEAVQHMNHSSLCCGS---------IFGQE 248

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGK--RFHYCLSNPPFG 302
                 A+    + +             NI QG TL   K L  G+  +F   ++NPPF 
Sbjct: 249 KNVVNSAIAKMNLFLHGASD-------FNIMQGDTLRSPKILQNGEIAKFDCVIANPPFS 301

Query: 303 -KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +KW         E  + + GR   G P  S G   ++ H+   +    +G GR A+V+ 
Sbjct: 302 LEKWGS------VEWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASGNGRMAVVMP 352

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G     E  IR  L+++DL+EA+V L   LF+ T ++    IL   K      +
Sbjct: 353 QGVLFRGNE---EGRIREKLVKSDLVEAVVTLGDKLFYGTPLSPCFLILRRLKPAAHSAR 409

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
           V +I+ T + T  R     + I++ +   ++ ++Y + E+ + FS+++
Sbjct: 410 VLMIDGTKILTVKR----AQNILSPEDVNRLYELYTNYEDVEDFSKVV 453


>gi|320526800|ref|ZP_08027990.1| putative type I restriction-modification system, M subunit
           [Solobacterium moorei F0204]
 gi|320132768|gb|EFW25308.1| putative type I restriction-modification system, M subunit
           [Solobacterium moorei F0204]
          Length = 510

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 169/428 (39%), Gaps = 59/428 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E      R   L   G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFER-----RYDELLKEGEGFENDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGST-----------NTRNNLESYIASFSDNAKAIFEDFDFSST 123
                FY   E   S + S            N   ++E    S  +     +   D    
Sbjct: 70  AEENIFYVPEEARWSKIASAAHTPEIGAVIDNAMRSIEKENTSLKNVLPKNYASPDLDKR 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +  L +   L+       G EL  D     ++   YE+ I +F +       +F TP  +
Sbjct: 130 V--LGEVVDLFTNEIKMDGTELSKD-----LLGRTYEYCIAQFAAYEGAKGGEFYTPSSI 182

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V    A+L           P     +YDP CG+GG    +   V    +H     I+  +
Sbjct: 183 VKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSDNRGIISVY 229

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG- 302
           GQE   +T  +    M IR +      D +       T   D+    +  + ++NPPF  
Sbjct: 230 GQESNADTWKMAKMNMAIRGI------DANFGSYHADTFFNDIHKTLKSDFIMANPPFNL 283

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
             W  DK  V+         R+  G+P   + +  ++ H+     L PNG  +  +VL++
Sbjct: 284 SNWGADKLKVDP--------RWKYGVPPSGNANYAWIQHMI--YHLAPNG--KIGLVLAN 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L      SGE EIR+ ++E+DLIE IVALPT LF+   I   LW +S  K  +++GK 
Sbjct: 332 GAL--SSQSSGEGEIRKKIIEDDLIEGIVALPTQLFYSVTIPVTLWFISRNK--KQKGKT 387

Query: 423 QLINATDL 430
             I+A  +
Sbjct: 388 LFIDARKM 395


>gi|312973900|ref|ZP_07788071.1| type I restriction-modification system, M subunit [Escherichia coli
           1827-70]
 gi|310331434|gb|EFP98690.1| type I restriction-modification system, M subunit [Escherichia coli
           1827-70]
          Length = 507

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 163/349 (46%), Gaps = 45/349 (12%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H      L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHDSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL     F    +NPPF   KW  D      E +N + GRF  G+P 
Sbjct: 270 DTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+    G GR  +V+    LF G   S E +IR+ L++ +L++A+
Sbjct: 321 KTKGDYAFISHMIETLK---PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           + LP  LF+ T I   + I   +K ++   KV  I+A+  + + +N+ +
Sbjct: 375 IGLPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKAGKNQNQ 420


>gi|301162152|emb|CBW21697.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           638R]
          Length = 517

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 38/289 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++    + L        R +YDPT
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHNRL--------RNVYDPT 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A  G    I      +GQE  P T+ +    ML+  +     R  S
Sbjct: 233 CGSGSLLLRA----ASIGKAAYI------YGQEKNPTTYNLARMNMLLHGI-----RFSS 277

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K +D
Sbjct: 278 FKIENGDTLEWDAFDDMQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP--KKTAD 334

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
            +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI+ 
Sbjct: 335 YA--FILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAIIG 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++ + K R
Sbjct: 386 LPANIFYGTSIPTCILVL--KKCRKEDDNILFIDASKEFEKVKTQNKLR 432


>gi|21228396|ref|NP_634318.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906869|gb|AAM31990.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 808

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 45/326 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   +L      +         T YD
Sbjct: 135 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQIL-----GIRYADTTSSTTAYD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      VAD          +  +GQE +  T  +    M+   L ++P   
Sbjct: 190 PTCGSGSLLL----KVADEARTK-----ITLYGQEKDATTSGLARMNMI---LHNNPE-- 235

Query: 272 LSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
               I QG+TL+    KD  T K F Y ++NPPF  K+W    D ++  ++     RF P
Sbjct: 236 --ALIVQGNTLTDPRFKDRETLKTFDYVVANPPFSDKRWSTGLDPLKDIYE-----RFKP 288

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P    G   +L+H+   L+      G+ A +L    LF G   + E+EIR  L+   
Sbjct: 289 FGIPPAKQGDYAYLLHIVRSLK----STGKGACILPHGVLFRG---NSEAEIRHALVRKG 341

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LF+ T I   + ++   + + R+  + +I+A+        +G K R+  
Sbjct: 342 YIKGIIGLPANLFYGTGIPACIIVIDKEEAQNRKS-IFMIDAS---AGFMKDGPKNRLRA 397

Query: 446 DDQRRQILDIYVSR-ENGKFSRMLDY 470
            D  R I+D++  + E  K+SR++ +
Sbjct: 398 QDIHR-IVDVFTRQAEIPKYSRIVSF 422


>gi|76787763|ref|YP_330354.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae A909]
 gi|77406552|ref|ZP_00783602.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae H36B]
 gi|77411600|ref|ZP_00787941.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae CJB111]
 gi|76562820|gb|ABA45404.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae A909]
 gi|77162317|gb|EAO73287.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae CJB111]
 gi|77174830|gb|EAO77649.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae H36B]
          Length = 526

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 157/332 (47%), Gaps = 44/332 (13%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E+  ++V    + + YE+LI  F SE  + A +F TP+ V HL T ++    +    +  
Sbjct: 163 EIDFESVDGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFSGRE----DQK 218

Query: 204 GMIRTLYDPTCGTGGFLTDA--MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           GM  TLYDP   +G  L +A   +H +D  S++         GQE+   T+ +    M++
Sbjct: 219 GM--TLYDPAMESGTLLLNAKKYSHQSDTVSYY---------GQEINTSTYNLARMNMML 267

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             +  +     ++++    TL  D  T +   F   L NPP+  KW     A      + 
Sbjct: 268 HGVAIE-----NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDP 318

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               +G   PK S     FL+H    L+      G  AIVL    LF G A   E +IR+
Sbjct: 319 RFSSYGVLAPK-SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQ 370

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LLE   I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK
Sbjct: 371 KLLEQGAIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGK 423

Query: 440 KRRIINDDQRRQILDIYVSRENG-KFSRMLDY 470
            +  + D   ++ILD Y SR+N  KFS +  +
Sbjct: 424 NQNTMTDAHIKKILDAYKSRDNSDKFSYLASF 455


>gi|253569687|ref|ZP_04847096.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp.
           1_1_6]
 gi|251840068|gb|EES68150.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp.
           1_1_6]
          Length = 517

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 38/289 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++    + L        R +YDPT
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHNRL--------RNVYDPT 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A  G    I      +GQE  P T+ +    ML+  +     R  S
Sbjct: 233 CGSGSLLLRA----ASIGKAAYI------YGQEKNPTTYNLARMNMLLHGI-----RFSS 277

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K +D
Sbjct: 278 FKIENGDTLEWDAFDDMQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP--KKTAD 334

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
            +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI+ 
Sbjct: 335 YA--FILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAIIG 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++ + K R
Sbjct: 386 LPANIFYGTSIPTCILVL--KKCRKEDDNILFIDASKEFEKVKTQNKLR 432


>gi|86149451|ref|ZP_01067682.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596435|ref|ZP_01099672.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612527|ref|YP_001001194.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167006086|ref|ZP_02271844.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|218563146|ref|YP_002344925.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|19881206|gb|AAM00822.1|AF486544_5 HsdM3 [Campylobacter jejuni]
 gi|19881245|gb|AAM00854.1|AF486551_5 HsdM [Campylobacter jejuni]
 gi|19881287|gb|AAM00889.1|AF486558_5 HsdM [Campylobacter jejuni subsp. jejuni 81-176]
 gi|85840233|gb|EAQ57491.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|87249780|gb|EAQ72739.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|88191276|gb|EAQ95248.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360852|emb|CAL35653.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926752|gb|ADC29104.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315926723|gb|EFV06101.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929701|gb|EFV08876.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 500

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 46/315 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 151 VLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLVTML----------EPYKGR-VFDPC 199

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T+ +    + IR++ES      S
Sbjct: 200 CGSGGMFVQSEEFVK---SHQGRLDDISIYGQESNQTTYKLAKMNLAIRKIES------S 250

Query: 274 KNI--QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPG 327
           + I   +GS L+ D     +  + ++NPPF      D D       +GEL    GR+  G
Sbjct: 251 QVIWNNEGSFLN-DAHKDLKADFIIANPPFN-----DSDW------SGELLENDGRWKYG 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  S+ +  ++ H      L PNGG  A  VL+   L +    + E+ IR+ L+E+DLI
Sbjct: 299 VPPASNANYAWIQHFL--YHLSPNGG-VAGFVLAKGALTSNT--TNEAAIRKALIEDDLI 353

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + IV LP  LF  T I   LW +  +K  +   K   I+A DL T I    ++ + +N D
Sbjct: 354 DCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFIDARDLGTRIN---RRNKTLNKD 410

Query: 448 QRRQILDIYVSRENG 462
              QI +IY + +NG
Sbjct: 411 DINQIANIYKAWKNG 425


>gi|169346894|ref|ZP_02865842.1| type I restriction-modification system, M subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296953|gb|EDS79077.1| type I restriction-modification system, M subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 514

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 206/481 (42%), Gaps = 73/481 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP------------------ 50
           ++L + +W  A DL G+   ++F   IL     R L   +E                   
Sbjct: 12  SNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSYEEAWE 71

Query: 51  ---TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
               R A++E+ +   G  I+   F+     +   T ++ +  L      N  ES +   
Sbjct: 72  DEELREALKEELVNDIGYFIE-PKFLFDKLLAKIETGDFDIEILEEA-INNITESTLGQE 129

Query: 108 SDNA-KAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           S+     +F+D D  ST    +   ++ L+ K+    + I+   D     ++ + YE+LI
Sbjct: 130 SEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYEYLI 189

Query: 164 RRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +F +   + A +F TP+ V   LA  + +   D         ++ +YDPTCG+G  L  
Sbjct: 190 GQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTD---------LKNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                       +   + + +GQE    T+ +    ML+  ++ SD       NI+   T
Sbjct: 241 V----------SREAKVRMFYGQEKTSTTYNLARMNMLLHGVKYSDF------NIKNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L        +F   ++NPP+  KW  D   ++ E        +G   PK S     F+ H
Sbjct: 285 LENPQHGDLKFEAIVANPPYSAKWSGDDKFLDDER----FSAYGKLAPK-SKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + LE      G  A+VL    LF G A   E  IR+ L+E  ++++A++ LP ++FF 
Sbjct: 340 MIHHLE----DNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  +    +  I+A++ +     +GK + ++ D    +I++ Y  RE
Sbjct: 393 TSIPTVILVF--KKNRKNADNIMFIDASNEFE----KGKNQNVLRDRDVEKIVETYKKRE 446

Query: 461 N 461
           N
Sbjct: 447 N 447


>gi|19881211|gb|AAM00826.1|AF486545_4 HsdM [Campylobacter jejuni]
          Length = 500

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 46/315 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 151 VLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLVTML----------EPYKGR-VFDPC 199

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T+ +    + IR++ES      S
Sbjct: 200 CGSGGMFVQSEEFVK---SHQGRLDDISIYGQESNQTTYKLAKMNLAIRKIES------S 250

Query: 274 KNI--QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPG 327
           + I   +GS L+ D     +  + ++NPPF      D D       +GEL    GR+  G
Sbjct: 251 QVIWNNEGSFLN-DAHKDLKADFIIANPPFN-----DSDW------SGELLENDGRWKYG 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  S+ +  ++ H      L PNGG  A  VL+   L +    + E+ IR+ L+E+DLI
Sbjct: 299 VPPASNANYAWIQHFL--YHLSPNGG-VAGFVLAKGALTSNT--TNEAAIRKALIEDDLI 353

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + IV LP  LF  T I   LW +  +K  +   K   I+A DL T I    ++ + +N D
Sbjct: 354 DCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFIDARDLGTRIN---RRNKTLNKD 410

Query: 448 QRRQILDIYVSRENG 462
              QI +IY + +NG
Sbjct: 411 DINQIANIYKAWKNG 425


>gi|91773784|ref|YP_566476.1| type I restriction-modification system, M subunit [Methanococcoides
           burtonii DSM 6242]
 gi|91712799|gb|ABE52726.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 554

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 165/364 (45%), Gaps = 45/364 (12%)

Query: 109 DNAKAIFEDFDF-SSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D+ + +FED D  SS + +   A   L+ K+  +   I+   +     V+ + YE+LI +
Sbjct: 167 DDFENLFEDMDLNSSKLGKTPAARNALISKVLSHLDKIDFQLEHTELDVLGDAYEYLIGQ 226

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP+ V  +   L+              +R++YDPTCG+G  L     
Sbjct: 227 FASGAGKKAGEFYTPQQVSTILAKLV--------TTGKKRLRSVYDPTCGSGSLLLRVAR 278

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V D  +          +GQEL   T+ +    M++  +     R    +I+Q  TL   
Sbjct: 279 EVEDVSAF---------YGQELNRTTYNLARMNMILHNVH---YRKF--DIKQEDTLEYP 324

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              G +F   ++NPPF  +W  +      + +  + G+  P     S     F+ H+ + 
Sbjct: 325 QHLGMQFEAIVANPPFSAQWSANP-LFSSDERFSQYGKLAPK----SKADYAFVQHMIHH 379

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIA 404
           L       G  AIVL    LF G A   E  IR++L+ E + ++A++ LP ++F+ T+I 
Sbjct: 380 LA----ENGSMAIVLPHGVLFRGAA---EGHIRQFLIEEKNYLDAVIGLPANVFYGTSIP 432

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
           T + +   +K  E    +  I+A+  +  ++ + + R    D    +I+D Y +R E  K
Sbjct: 433 TCVLVF--KKCRENPDDILFIDASQDYEKVKTQNQLRPCDID----KIVDTYRNRKEIEK 486

Query: 464 FSRM 467
           +S +
Sbjct: 487 YSHV 490


>gi|328545367|ref|YP_004305476.1| Type I restriction-modification system, M subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326415109|gb|ADZ72172.1| Type I restriction-modification system, M subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 505

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 47/358 (13%)

Query: 112 KAIFEDFDFSS--TIAR-LEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F + DF+S   + R  ++   L  + ++F+   ++L P  V + ++   Y +LI RF
Sbjct: 114 EGVFRNIDFNSEANLGRPKDRNRRLKNLLEDFAKPALDLRPSRVTEDIIGECYIYLISRF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  + A +F TP  V  L   L           +P    T+ DP CG+G  L  A   
Sbjct: 174 ASDAGKKAGEFYTPTAVSRLLAKL----------AAPQPGNTICDPACGSGSLLIQASQE 223

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   GS +        +GQE+   T A+    M +   ++  R +    +   + +  D 
Sbjct: 224 V---GSEN-----FALYGQEVNGATWALARMNMFLHAKDA-ARIEWCDTLNSPALVEGDH 274

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               RF   L+NPPF   KW  +  A +  +      RF  G+P  S G   F+ H+   
Sbjct: 275 LM--RFDVVLANPPFSLDKWGAENAASDPYN------RFWRGIPPRSKGDYAFITHM--- 323

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +E+     GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I  
Sbjct: 324 IEIARRQSGRVAVIVPHGVLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPV 380

Query: 406 YLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            + I    + E      R  V  I+A+  +T     GK + ++++    ++L+ Y SR
Sbjct: 381 AILIFDRSREEGGANAGRRDVLFIDASKEFTP----GKTQNVMDEAHVAKVLETYRSR 434


>gi|323972572|gb|EGB67775.1| N-6 DNA methylase [Escherichia coli TA007]
          Length = 507

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 172/369 (46%), Gaps = 45/369 (12%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSG--IELHPDTVPD-R 153
           E+      D  K++F+D  F++   RL    +K  +L ++ ++F+G  + L P  V    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTD--RLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +     H      L   GQE    T ++    M +   E + + +  
Sbjct: 215 CGSGSLLMKCGRKI--VSGHDSRNYALF--GQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+    L K+      F    +NPPF   KW  D      E +N + GRF  G+P  +
Sbjct: 270 DTIRNPKLLDKN-GNLMLFDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPPKT 322

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G   F+ H+   +E    G GR  +V+    LF G   S E +IR+ +++ +L++A++ 
Sbjct: 323 KGDYAFISHM---IETLKPGTGRMGVVVPHGVLFRG---SSEGKIRQKMIDENLLDAVIG 376

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I   + I   +K ++   KV  I+A+  + +    GK +  ++++  ++I
Sbjct: 377 LPEKLFYGTGIPAAILIFKKQKVDD---KVLFIDASREFKA----GKNQNQLSEENIKKI 429

Query: 453 LDIYVSREN 461
           +  Y   +N
Sbjct: 430 VKTYRDGDN 438


>gi|86158751|ref|YP_465536.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775262|gb|ABC82099.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 538

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 185/442 (41%), Gaps = 44/442 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           TE   +AA+L   +W  A++L  +   K  ++ + IL    L+  +      R+ + +  
Sbjct: 7   TEKDVAAATLEKRLWAAADELRANSGLKSAEYSQPILGLIFLKFADARFAVRRAELAKVT 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               GS +D  +     G  F  +       L       + ++   +  D  +A+  D +
Sbjct: 67  TGRRGSRVDDPASYHAEGVLFLASEARFSELLEFPEGGRDGKTLGQAVDDAMRAVERDNE 126

Query: 120 FSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             + +     +  KA  L ++ K FS I   P  +       IYE+ +  F     +G  
Sbjct: 127 QLAGVLPKTYQQFKARPLKELLKAFSAI---PVDLEGDSFGKIYEYFLGEFAMAEGQGGG 183

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ +V L   +L           P   R L DP CG+GG    +   V    S HK
Sbjct: 184 EFYTPQPIVRLMVEIL----------EPFKGRVL-DPACGSGGMFVQSARFV----SEHK 228

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L  HG E    T  +C   + +  LE D R     N    S          RF + 
Sbjct: 229 KNGGLAIHGVEKVDTTGQLCRMNLAVHGLEGDIRHGGEIN----SYYDDPHNAVGRFDFV 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           L+NPPF      + D V+K+     +G   RF  G+P + + + L++    + L    N 
Sbjct: 285 LANPPF------NVDKVDKDRIRDAVGPGRRFPFGVPNVDNANYLWIQLFYSAL----NE 334

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRA  V++SS      A + E E+RR L+E+  ++ I+++ + +F+   +   LW L  
Sbjct: 335 SGRAGFVMASSAP---DARASEQELRRKLIESRAVDVIISVGSKMFYTVALPCTLWFLDR 391

Query: 413 RKTEERRGKVQLINATDLWTSI 434
            K ++RR KV  I+A  ++  +
Sbjct: 392 GKPKDRRDKVLFIDAQHIYRQV 413


>gi|332289039|ref|YP_004419891.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330431935|gb|AEC16994.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 511

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 203/487 (41%), Gaps = 73/487 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE---S 71
           IW+ A D+ G     DF + +L     R +        +     Y       I  E    
Sbjct: 14  IWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFASFFNDEETNYADLTDDVITNEIKDD 73

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNA---------KAIFEDF 118
            +KV GY  Y  S+  ++ + + N+  +L + + +      D+A         K +F DF
Sbjct: 74  VIKVKGYFIY-PSQLFVNIVKNANSNEHLNTDLKNIFNEIEDSAVGYPSEPDIKGLFADF 132

Query: 119 DFSS-----TIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           D +S     T+A  +K   L  + K  + ++  H +     +  + YE LI  + +   +
Sbjct: 133 DTTSNRLGNTVA--DKNKRLAAVLKGVAELDFGHFEDNQIDLFGDAYEFLISNYAANAGK 190

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVA 228
              +F TP++V  L   L L             +  +YDP CG+G  L  A      H+ 
Sbjct: 191 SGGEFFTPQNVSKLIARLAL--------HGQSTVNKIYDPACGSGSLLLQAKKQFDAHII 242

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           + G            GQE+   T+ +    M +  +  D       NI  G TL    F 
Sbjct: 243 EEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----NISLGDTLLNPQFG 287

Query: 288 TGKRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           + K F   +SNPP+  KW   D   +  + +    G   P     S     F++H  + L
Sbjct: 288 SDKPFDAIVSNPPYSVKWIGSDDPTLINDDRFASAGVLAPK----SKADFAFILHTLSYL 343

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               +  GRAAIV      + G A   E +IR++L++N+ IE ++AL  +LFF T+IA  
Sbjct: 344 ----SAKGRAAIVTFPGIFYRGGA---EQKIRKYLVDNNFIETVIALAPNLFFGTSIAVN 396

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +LS  KT+      Q I+A +L+    N      ++ D+   +I+ ++  + +    +
Sbjct: 397 ILVLSKHKTDMM---TQFIDAGELFKKETN----NNVLTDEHITKIIQLFSEKTDVPHLA 449

Query: 466 RMLDYRT 472
           + +DY+ 
Sbjct: 450 KSVDYQV 456


>gi|319400012|gb|EFV88254.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis FRI909]
          Length = 518

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 165/358 (46%), Gaps = 48/358 (13%)

Query: 114 IFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSE 169
           +F D D +ST        +  L+ K+  N + +  +H D   D ++ + YE+LI +F + 
Sbjct: 137 LFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEID-MLGDAYEYLIGQFAAN 195

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   ++           P + + +YDPTCG+G  L   +   AD
Sbjct: 196 AGKKAGEFYTPQQVSKILAKIVT-------TNKPNL-KNVYDPTCGSGSLLL-RVGREAD 246

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              ++         GQE    T  +    ML+  +     +     I    TL    F G
Sbjct: 247 VRFYY---------GQEYNNTTFNLARMNMLLHDVNYTRFK-----IDNDDTLENPAFRG 292

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   ++NPP+  KW  D   ++ E  +G    +G   PK S     F+ H+ + L+  
Sbjct: 293 GKFDAVVANPPYSAKWSADPSFLDDERFSG----YGKLAPK-SKADFAFIQHMIHYLD-- 345

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLW 408
               G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LF+ T+I T + 
Sbjct: 346 --DNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFYGTSIPTSIL 400

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           +   +K  E    V  I+A+  +     +GK + ++ D+   +I++ Y +RE   KFS
Sbjct: 401 VF--KKCREDSDNVLFIDASQSF----EKGKNQNLLTDEDVDKIVETYRNRETIDKFS 452


>gi|307249502|ref|ZP_07531490.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858495|gb|EFM90563.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 517

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 211/497 (42%), Gaps = 74/497 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYAAWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI L  E  +K  GY  Y +  +  + + + ++  NL + +                 
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFE-NVVKNAHSNPNLNTELKEIFTAIESSATGYDSE 125

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           ++ K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE 
Sbjct: 126 NDIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEF 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L 
Sbjct: 183 LISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLL 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D    H I       GQE+   T+ +    M +  +  D       +I  G+T
Sbjct: 235 QAKKQFDD----HIIEDGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DITLGNT 283

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F
Sbjct: 284 LLKPQFGDSKPFDAIVSNPPYSVKWIGDGDPTLINDE-----RFAPAGVLAPKSKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 339 ILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+IA  + +LS  KT+    K Q I+A+ ++    N  +    + D+   +I+ ++  
Sbjct: 392 FGTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETNNNE----LTDEHIAEIIKLFSD 444

Query: 459 REN-GKFSRMLDYRTFG 474
           + +     +M+D +T  
Sbjct: 445 KADVDHLVQMVDNQTIA 461


>gi|19881239|gb|AAM00849.1|AF486550_5 HsdM [Campylobacter jejuni]
          Length = 500

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 46/315 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 151 VLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLVTML----------EPYKGR-VFDPC 199

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T+ +    + IR++ES      S
Sbjct: 200 CGSGGMFVQSEEFVK---SHQGRLDDISIYGQESNQTTYKLAKMNLAIRKIES------S 250

Query: 274 KNI--QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPG 327
           + I   +GS L+ D     +  + ++NPPF      D D       +GEL    GR+  G
Sbjct: 251 QVIWNNEGSFLN-DAHKDLKADFIIANPPFN-----DSDW------SGELLENDGRWKYG 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  S+ +  ++ H      L PNGG  A  VL+   L +    + E+ IR+ L+E+DLI
Sbjct: 299 VPPASNANYAWIQHFL--YHLSPNGG-VAGFVLAKGALTSNT--TNEAAIRKALIEDDLI 353

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + IV LP  LF  T I   LW +  +K  +   K   I+A DL T I    ++ + +N D
Sbjct: 354 DCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFIDARDLGTRIN---RRNKTLNKD 410

Query: 448 QRRQILDIYVSRENG 462
              QI +IY + +NG
Sbjct: 411 DINQIANIYKAWKNG 425


>gi|256023433|ref|ZP_05437298.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia sp. 4_1_40B]
 gi|315618356|gb|EFU98944.1| type I restriction-modification system, M subunit [Escherichia coli
           3431]
          Length = 812

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 161/349 (46%), Gaps = 57/349 (16%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATAL 190
           L K+   F G+ L  +    D ++ + YE+L+R F +E  +    F TP +V   LA  +
Sbjct: 115 LSKLVGIFEGLNLSSNRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            + PD      +P    T+YDPTCG+G  L   +N  A  G        L   GQE++  
Sbjct: 175 GITPD------TP-QDATVYDPTCGSGSLLL-KVNDEARRG--------LSIFGQEMDNA 218

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK- 304
           T A+    M++         + +  I QG+TLS   +       K F + ++NPPF  K 
Sbjct: 219 TSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLKAFDFAVANPPFSNKN 271

Query: 305 WEK----DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           W       KD  E         RFG G+P   +G   FL+H+   L+      G+ A++L
Sbjct: 272 WTNGLTPKKDPFE---------RFGWGIPPEKNGDYAFLLHIIKSLK----STGKGAVIL 318

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E+ IR  L++   I+ ++ LP +LF+ T I   + ++       R+G
Sbjct: 319 PHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVIDKEHAHSRKG 375

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
            + +I+A+        +G K R+ + D  R I+D++   R    +SRM+
Sbjct: 376 -IFMIDAS---RGFIKDGNKNRLRSRDIHR-IVDVFNHQRTVPGYSRMV 419


>gi|319939011|ref|ZP_08013375.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
 gi|319812061|gb|EFW08327.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
          Length = 531

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 123/511 (24%), Positives = 215/511 (42%), Gaps = 96/511 (18%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           + N IW  A +L G+   +++   IL F   R L        S  +E+YL      +DLE
Sbjct: 7   ITNKIWAMANELRGNMDASEYKNYILAFMFYRYL--------SEHQEQYL-INNDILDLE 57

Query: 71  SFVKV--------AGYSFYNTSEYSLSTLGS------------TNTRNN------LESYI 104
               +         G    +  E   S+LG             T   NN       ++  
Sbjct: 58  DGKTINQLYKEQATGEELADYLEDIASSLGYAIAPEDTWLSLLTRIENNEVIPSDYQTIF 117

Query: 105 ASFSDNA----------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDT 149
             F+ NA          + +F D +   T  RL     ++A  L +I K    I    D 
Sbjct: 118 DHFNANAELNKEAVQDFRGVFNDINLGYT--RLGSSTNDRAKSLNRIVKLVDDINYKSDD 175

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D ++  IYE LI++F +   +   +F TP +V  +   ++ D       E      ++
Sbjct: 176 GRD-ILGFIYEELIKKFAASAGKKGGEFYTPHEVSQILAKIVTDK-----VEQTERTFSV 229

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L    N + +     + P  +   GQEL   T+ +    +++  +     
Sbjct: 230 YDPTMGSGSLLLTVGNELPNG----QKPGAIKYFGQELNTTTYNLARMNLMMHGVTYS-- 283

Query: 270 RDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
              + N+    TL  D   G         + F   ++NPP+  KW+ + D   K+ +  E
Sbjct: 284 ---NMNLSNADTLESDWPDGPDEKGVDHPRSFDAVVANPPYSAKWD-NADNKLKDPRFSE 339

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            G+  P     S     F++H    L    N  G  AIVL    LF G A   E +IR+ 
Sbjct: 340 YGKLAPA----SKADFAFILHSVYHL----NDTGTMAIVLPHGVLFRGAA---ELKIRQT 388

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+E + ++ ++ LP +LF+ T+I T + +   RK +E R  +  I+A+  +    ++GK 
Sbjct: 389 LVEKNYLDTVIGLPANLFYGTSIPTTVLVF--RKNKENR-DILFIDASKDF----DKGKN 441

Query: 441 RRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
           +  +ND    +I++ + +R++  K++R++ +
Sbjct: 442 QNTLNDTHIEKIIETFRNRQDVNKYARLVSF 472


>gi|293401669|ref|ZP_06645811.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304927|gb|EFE46174.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 508

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 190/426 (44%), Gaps = 56/426 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A +   + + E+   +G  N D +++++
Sbjct: 14  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFDKRYNELVEE--GYGFEN-DRDAYIE 70

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAI-FEDFDFSSTIAR------ 126
              +     + +S  +      +N     I    D+A +AI  E+    + + +      
Sbjct: 71  ENVFFVPEKARWSYIS------KNAHTHEIGKVIDDAMRAIEAENKTLKNVLPKNYATPD 124

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+K  +L  +   F+ +++        ++   YE+ I+ F +       +F TP  +V  
Sbjct: 125 LDKR-VLGNVVDVFNCVDMKDTEDSKDLLGRTYEYCIQEFAAHEGVKGGEFYTPSSIVKT 183

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQ 245
              +L   D+            +YDP CG+GG    ++  + A  G+ ++I      +GQ
Sbjct: 184 IVEILKPFDNC----------RVYDPCCGSGGMFVQSVKFLQAHSGNRNRISV----YGQ 229

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KK 304
           E   +T  +    M IR +      D +       T  +DL    +  + ++NPPF    
Sbjct: 230 ESNADTWKMAKMNMAIRGI------DANFGPYHADTFFEDLHPTLKADFIMANPPFNLSN 283

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W +DK   +K        R+  G+P   + +  ++ H+ +   L PNG  +  +VL++  
Sbjct: 284 WGQDKLKEDK--------RWVYGIPPAGNANFAWIQHMIH--HLAPNG--KIGLVLANGA 331

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L      SGE +IR+ ++E DLIE IVALPT LF+   I   LW ++  K ++++GK   
Sbjct: 332 L--SSQTSGEGQIRKNIIEADLIEGIVALPTQLFYSVTIPVTLWFIT--KNKKQKGKTLF 387

Query: 425 INATDL 430
           I+A  +
Sbjct: 388 IDARKM 393


>gi|288457860|ref|YP_003422728.1| type I restriction-modification system, M subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|285026835|gb|ADC33925.1| type I restriction-modification system, M subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 515

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 189/460 (41%), Gaps = 90/460 (19%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---GGS 65
           A+L   IW  A D+ G     DF + +L  TL  R           + E + A+   G  
Sbjct: 8   AALQRKIWDIANDVRGSVDGWDFKQYVLG-TLFYRF----------ISENFAAYIEAGDE 56

Query: 66  NIDLESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
           +ID  +              +K  GY  Y +  ++ +     NT ++L + +A       
Sbjct: 57  SIDYAALSDNVITDDIKDDAIKTKGYFIYPSQLFA-NVADDANTNDSLNTDLARIFTAIE 115

Query: 108 --------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL---HPDTVP 151
                     + + +F DFD +ST  RL     EK   L K+ K  + ++    H   + 
Sbjct: 116 SSANGYPSEQDIRGLFADFDTTST--RLGNTVTEKNSRLAKVLKRVAELDFGDFHNSQID 173

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE LI  + +   +   +F TP+ V  L   L +             +  +YD
Sbjct: 174 --LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQKKVNKIYD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A          H I       GQE+   T+ +    M +  +  D    
Sbjct: 224 PACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-- 275

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              NIQ+G TL++  F   K F   +SNPP+  KW    D            RF P   L
Sbjct: 276 ---NIQRGDTLTQPHFQDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVL 327

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  + L    +  GRAAIV      +  R G+ E +IR++L++N+ +E
Sbjct: 328 APKSKADFAFVLHALSYL----SAKGRAAIVCFPGIFY--RDGA-EKKIRKYLVDNNYVE 380

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            ++AL ++LF+ T IA  + +L+  KT      +Q I+A+
Sbjct: 381 TVIALASNLFYGTTIAVTILVLAKNKT---HAAIQFIDAS 417


>gi|256841216|ref|ZP_05546723.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
 gi|256737059|gb|EEU50386.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
          Length = 496

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 192/455 (42%), Gaps = 70/455 (15%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E TG A  L NF+++    + G     +F   I P    +R+    +       E  ++ 
Sbjct: 9   ELTG-AQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYD---EETEEALISS 64

Query: 63  GG-----SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           GG     S  +   FV   G  +    E +   LG+       +  IA    N   ++  
Sbjct: 65  GGDKEYASLPEQHRFVIPDGCHWQEVRERT-ENLGAAIVGAMRQIEIA----NPDTLYGV 119

Query: 118 FDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
               S+     KA L    +  + ++ S  EL     P  +M + YE L+++F  +    
Sbjct: 120 LSMFSSQKWTNKAILNDSKIRDLIEHLSKRELGNKDYPADLMGDAYEILLKKFADDSKAQ 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
           A +F TPR VV L   +L DP        PG   T+YDP CG+GG L +A+ ++ D    
Sbjct: 180 AGEFYTPRSVVRLLVHIL-DP-------QPG--ETIYDPACGSGGMLIEAIRYMHDDFLC 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGSTLS 283
           CGS           GQE      A+    + +        ++ D  RD    I QG  ++
Sbjct: 230 CGS---------IFGQEKNVVNAAIAKMNLFLHGASDFNVMQGDTLRD--PKILQGGNIA 278

Query: 284 KDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K       F   ++NPPF  + W   + + +K  +N        G P  S G   ++ H+
Sbjct: 279 K-------FDCVIANPPFSLENWGATEWSSDKYKRNIY------GTPSDSCGDYAWIQHM 325

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              +    +G GR A+V+    LF  +    E+EIR+ L+E+DLIEA+V L   LF+ T 
Sbjct: 326 ICSM---VSGQGRMAVVMPQGILFRNQ----ETEIRKQLVESDLIEAVVTLGDKLFYGTG 378

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           ++    I+   K     G++ +I+ + + T  R +
Sbjct: 379 LSPCFLIIRRMKPAHHFGRILMIDGSKILTQKRAQ 413


>gi|90961896|ref|YP_535812.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|90821090|gb|ABD99729.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
          Length = 529

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 176/386 (45%), Gaps = 52/386 (13%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N   + +S LG  +  N++ES    F    + +F+D+D  S             I +  S
Sbjct: 102 NNHTFQVSQLG--DAFNSIESQGKEF----EGLFDDYDLYSKRLGNTAQKQSDTISEVLS 155

Query: 142 GI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            I +L     P+  + N YE+LI++F SE  + A +F TP+ V  L   L L   D    
Sbjct: 156 AIGKLEIVKTPEDTLGNAYEYLIKQFASESGKKAGEFYTPQKVSRLLARLTLVDKDY--- 212

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            + GM  T+YDPT G+G  L +   +V         P  +   GQE+   T+ +    M+
Sbjct: 213 -TDGM--TVYDPTMGSGSLLLNFRKYVEH-------PKRITYFGQEINTSTYNLARMNMI 262

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKD---KDAVEKE 315
           +  ++      +++ ++   TL +D  +     F   + NPP+  KW  +   KD     
Sbjct: 263 LHHVDV-----VNQKLRNNDTLDEDWPVEEITNFDAVVMNPPYSHKWSANAGFKD----- 312

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +     +G  LP  S     FL+H    L+      G  AIVL    LF G A   E 
Sbjct: 313 --DPRFSAYGV-LPPKSKADYAFLLHGYYHLK----HSGVMAIVLPHGILFRGAA---EG 362

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ LLEN  I+A++ LP +LF+ T+I T + +L   K +++   V  I+A+  +  ++
Sbjct: 363 KIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVVL---KKDKQDRDVLFIDASKDFEKVK 419

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN 461
            + + R    D+   +IL  Y  R++
Sbjct: 420 TQNELR----DEDVEKILTTYKERKD 441


>gi|190890487|ref|YP_001977029.1| type I restriction-modification system protein, methyltransferase
           subunit [Rhizobium etli CIAT 652]
 gi|190695766|gb|ACE89851.1| probable type I restriction-modification system protein,
           methyltransferase subunit [Rhizobium etli CIAT 652]
          Length = 830

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 147/326 (45%), Gaps = 47/326 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +  A+      A    +    +T+YD
Sbjct: 154 DDILGDAYEYLMRNFATESGKSKGQFYTPAEVSRVVAAV------AGINRANSPRQTVYD 207

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A    AD  S       L  +GQE +  T  +    M++   E      
Sbjct: 208 PTCGSGSLLLKA----ADAASVE-----LTIYGQEFDITTRGLAKMNMIMHGRED----- 253

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
               I QG  ++   F       + F + ++NPPF  K W     A      N   GRF 
Sbjct: 254 --AEIAQGDVIADPQFRASETAIQTFDFVVANPPFSTKAWSSGLTA------NNRFGRFD 305

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P   +G   FL+H+   ++      G  A++L    LF G   + E+E+R  +L+  
Sbjct: 306 IGMPPEKNGDFAFLLHILASMK----ATGSGAVILPHGVLFRG---NKEAELREKILKRG 358

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++AI+ LP +LF+ T I   + +L      +RR  V +I+A+        +G K R+  
Sbjct: 359 YVKAIIGLPANLFYGTGIPATIIVLDKSGACDRR-PVFMIDAS---RGFIKDGNKNRLRE 414

Query: 446 DDQRRQILDIYVSR-ENGKFSRMLDY 470
            D  + I+D+Y  + E   +S ++ Y
Sbjct: 415 RDIHK-IIDVYARQVEIKGYSSLVSY 439


>gi|301300590|ref|ZP_07206784.1| type I restriction-modification system, M subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851807|gb|EFK79497.1| type I restriction-modification system, M subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 529

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 176/386 (45%), Gaps = 52/386 (13%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N   + +S LG  +  N++ES    F    + +F+D+D  S             I K  S
Sbjct: 102 NNHTFQVSQLG--DAFNSIESQGKEF----EGLFDDYDLYSKRLGNTAQKQSDTISKVLS 155

Query: 142 GI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            I +L     P+  + N YE+LI++F SE  + A +F TP+ V  L   L L   D    
Sbjct: 156 AIGKLEIVKTPEDTLGNAYEYLIKQFASESGKKAGEFYTPQKVSRLLARLTLVDKDY--- 212

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            + GM  T+YDPT G+G  L +   +V            +   GQE+   T+ +    M+
Sbjct: 213 -TDGM--TVYDPTMGSGSLLLNFRKYVEHSER-------ITYFGQEINTSTYNLARMNMI 262

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKD---KDAVEKE 315
           +  ++      +++ ++   TL +D  +     F   + NPP+ +KW  +   KD     
Sbjct: 263 LHHVDV-----VNQKLRNNDTLDEDWPVEEITNFDTVVMNPPYSQKWSANAGFKD----- 312

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +     +G  LP  S     FL+H    L+      G  AIVL    LF G A   E 
Sbjct: 313 --DPRFSAYGV-LPPKSKADYAFLLHGYYHLK----HSGVMAIVLPHGILFRGAA---EG 362

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ LLEN  I+A++ LP +LF+ T+I T + +L   K +++   V  I+A+  +  ++
Sbjct: 363 KIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVVL---KKDKQDRDVLFIDASKDFRKVK 419

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN 461
            + + R    D+   +IL  Y  R++
Sbjct: 420 TQNELR----DEDVEKILTTYKERKD 441


>gi|227356295|ref|ZP_03840683.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus
           mirabilis ATCC 29906]
 gi|227163405|gb|EEI48326.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus
           mirabilis ATCC 29906]
          Length = 534

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 191/457 (41%), Gaps = 83/457 (18%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDLESFV 73
           +W  A  L G  + +++  V+L    L+ +    E  RS  ++    AF    +D++ F 
Sbjct: 17  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRSQLIKNGQEAF----VDMDVFY 72

Query: 74  K---------VAGYSFYNTS----------EYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +         V+ +S+              + +LST+  +N      S   +  DN    
Sbjct: 73  QQDNVFFLPQVSRWSYVQERAKQDDIAVIIDTALSTIEKSNA-----SLTGALPDNY--- 124

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                FS      +K   L    +N + +        + ++  +YE+ + RF +   +G 
Sbjct: 125 -----FSRQGLEPKKLASLIDSIENINTLATECGVGEEDLVGRVYEYFLGRFAASEGKGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ VV L  A +L+P              +YDP CG+GG    ++  V    SH 
Sbjct: 180 GEFYTPKSVVTL-LAEMLEPYQG----------KVYDPCCGSGGMFVQSLKFVE---SHQ 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRF 292
                +  +GQEL   T+ +    + +R         L+ N+ +    T   D     + 
Sbjct: 226 GKSKDIAIYGQELTSTTYKLAKMNLAVR--------GLTGNLGERPADTFFADQHPDLKA 277

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350
            + ++NPPF  K W       E E  N    RF G   P   + +  +++H+ +KL    
Sbjct: 278 DFIMANPPFNLKDWRN-----EAELTNDP--RFAGFRTPPTGNANYAWILHMLSKL---- 326

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G A  VL++  + +    SGE EIR+ L+E+D IE ++ALP  LFF T I   LW +
Sbjct: 327 SEDGVAGFVLANGSMSSNT--SGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFI 384

Query: 411 SNRKT-------EERRGKVQLINATDLWTSIRNEGKK 440
           S  K         +R+G+   I+A  L T I    K+
Sbjct: 385 SKSKQASAKYGYRDRQGETLFIDARHLGTMISRTQKE 421


>gi|297380050|gb|ADI34937.1| type I restriction-modification system, M subunit [Helicobacter
           pylori v225d]
          Length = 527

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 166/364 (45%), Gaps = 55/364 (15%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 135 ENVKGLFADLDVNSNKLGSSHKNRVEK---LNKILQAIGGMQLGDYQKSGID-VFGDAYE 190

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 191 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLL 242

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 243 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHG 290

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  D + +    +     RF P   L   +   +
Sbjct: 291 DTLLDPKHEDDEPFDAIVSNPPYSTKWAGDSNPILINDE-----RFSPAGVLAPKNAADL 345

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G AAIV     L+ G A   ES+IR +L++N+ I+ ++ALP +
Sbjct: 346 AFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---ESKIREYLVKNNFIDCVIALPDN 398

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K ++       I+A++ +     EGKK + + +  + +IL  Y
Sbjct: 399 LFFGTSIATCILVLKKNKQDDT---TLFIDASEEFVK---EGKKNK-LKEHNKEKILQTY 451

Query: 457 VSRE 460
             R+
Sbjct: 452 TERK 455


>gi|126465661|ref|YP_001040770.1| N-6 DNA methylase [Staphylothermus marinus F1]
 gi|126014484|gb|ABN69862.1| N-6 DNA methylase [Staphylothermus marinus F1]
          Length = 572

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 169/368 (45%), Gaps = 37/368 (10%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I   ++  + IF++FDF    +  E + +L ++ + F  + L  DT PD ++ + YE L+
Sbjct: 175 IGELNEELRPIFDNFDFHIFASNRENSEILRQLVELFDSVPLI-DTSPD-ILGDAYEWLL 232

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             F    ++  E F TPR+V+ L   +L DP        PG    + DP  G+GG L  +
Sbjct: 233 MMFAPTKAKEGEVF-TPREVIRLLVEIL-DP-------KPGY--KILDPAAGSGGMLIIS 281

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             ++ +     +   + +  GQE   +T A+    M I  + +       + I+ G +L 
Sbjct: 282 YKYIEEKHGREEADKLYL-FGQEANAKTAALAKMNMYIHGIAN-------QKIEVGDSLL 333

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              F    +   L+NPP    W +D   +  ++K  K   + ++G    + +D + + LM
Sbjct: 334 YPKFELGEWDIVLANPP----WNQDGYNEQVLKKNEKYRLIYKYGYTPSQTADWAWIQLM 389

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
             A K +      G+  +V+ +  LF G     E  IR  ++E DL+E ++ LP  LF+ 
Sbjct: 390 LAAAKPQ------GKVGVVIDNGALFRG---GREKSIRSKIIEEDLVETVILLPEKLFYN 440

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T     + I +  K +ERR K+  INA++ +    N  +  R+   +  +     Y  +E
Sbjct: 441 TGAPGAIIIFNKNKPQERRNKILFINASNEYEKHPNIRRLNRLSKQNIEKIAKTYYEYKE 500

Query: 461 NGKFSRML 468
              FSR++
Sbjct: 501 IPGFSRIV 508


>gi|58038320|ref|YP_190289.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H]
 gi|58000734|gb|AAW59633.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H]
          Length = 508

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 168/368 (45%), Gaps = 42/368 (11%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFS--GIELHPDTVPD-RVM 155
           E+      D  K++F+D  F+S     EK    +L  + ++F+   + L P  V +  V+
Sbjct: 107 EANGTKLKDAGKSVFQDISFNSDKLGDEKQKNTILRHLLEDFAKPDLNLRPSRVGNLDVI 166

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N YE LI+ F +   + A +F TP +V  L   +L          SP    ++ DP CG
Sbjct: 167 GNGYEFLIKNFAASGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACG 216

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +   L      V     +HK       +GQE    T +     M +   E + R +    
Sbjct: 217 SASLLMKCGKQVT---QNHKGSKDYALYGQEAIGSTWSFAKMNMFLHG-EDNHRIEWGDT 272

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+    L  D     RF    +NPPF   KW  + DA E  H      RF  G+P  + G
Sbjct: 273 IRNPKLLD-DKNHLMRFDVVTANPPFSLDKWGHE-DAAEDVHH-----RFARGVPPKTKG 325

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H+ + L+   +  GR  +V+    LF G   S E  IR+ L+E +L++A++ LP
Sbjct: 326 DYAFILHMISTLK---DRTGRMGVVVPHGVLFRG---SSEGRIRQKLIEENLLDAVIGLP 379

Query: 395 TDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             LFF T I   + I   +RKT++    V  I+A+  + +    GK + ++ ++   +I+
Sbjct: 380 EKLFFGTGIPAAILIFRKDRKTKD----VLFIDASREFRA----GKNQNVLTEENITKIV 431

Query: 454 DIYVSREN 461
           D Y +R++
Sbjct: 432 DTYRARKD 439


>gi|317009142|gb|ADU79722.1| type I restriction-modification system, M subunit [Helicobacter
           pylori India7]
          Length = 530

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 205/485 (42%), Gaps = 75/485 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDL 69
           L N IWK A +L G     DF + +L     R + E          RE+  +F  +N+  
Sbjct: 20  LHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERERDPSFDYANLSD 79

Query: 70  E-------SFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLESYIASFS------DN 110
           E        F++  G+       F N  + +        T  N+ + I   S      +N
Sbjct: 80  EEAESTRKGFIEEKGFFIPPSALFCNALKNAPDNEDLNVTLQNIFTEIEKSSLGTPSEEN 139

Query: 111 AKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHL 162
            K +F D D       SS   R+EK   L KI +   G++L  D +     V  + YE+L
Sbjct: 140 VKGLFADLDVNSNKLGSSHKTRVEK---LTKILQAIGGMQL-GDYLKSGIDVFGDAYEYL 195

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L  
Sbjct: 196 MAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQ 247

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGST 281
               + D              GQE+   T+ +C   M +  +      + SK +I  G T
Sbjct: 248 FSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGDT 295

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L          F   +SNPP+  KW  D   +    +     RF P   L   +   + F
Sbjct: 296 LLDPKHEDDEPFDAIVSNPPYSTKWVGDSSPILITDE-----RFSPAGVLAPKNAADLAF 350

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LF
Sbjct: 351 TMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPDNLF 403

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y+ 
Sbjct: 404 FGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILKTYIE 456

Query: 459 RENGK 463
           R+  K
Sbjct: 457 RKEVK 461


>gi|110597490|ref|ZP_01385777.1| type I restriction-modification system, M subunit [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341034|gb|EAT59505.1| type I restriction-modification system, M subunit [Chlorobium
           ferrooxidans DSM 13031]
          Length = 815

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 47/326 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++      +         T+YD
Sbjct: 149 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKII-----GIHNAPTTSNTTVYD 203

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L    +  A           +  +GQE +  T  +    M+   L ++P   
Sbjct: 204 PTCGSGSLLLKVGDEAA---------ARVTLYGQEKDAATSGLARMNMI---LHNNP--- 248

Query: 272 LSKNIQQGSTLSKDLF----TG--KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF 324
            +  I+QG+TL+  LF    +G  K F Y ++NPPF  K W K  D  +        GRF
Sbjct: 249 -TAEIKQGNTLANPLFFDADSGDLKTFDYVVANPPFSDKSWSKGIDPFDDP-----FGRF 302

Query: 325 GP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+P    G   +L+H+   L+      G+ A +L    LF G A   E++IR  L+ 
Sbjct: 303 RHFGVPPAKQGDYAYLLHIIRSLK----STGKGACILPHGVLFRGNA---EADIRSKLVI 355

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              I+ ++ LP +LF+ T I   + ++  +    R+G + +I+A+        +G K R+
Sbjct: 356 MKYIKGVIGLPANLFYGTGIPACIIVIDKKDAHTRKG-IFMIDAS---AGFMKDGPKNRL 411

Query: 444 INDDQRRQILDIYVSR-ENGKFSRML 468
            + D  R I+D++    E  K+SRM+
Sbjct: 412 RDMDLHR-IVDVFSRELEIPKYSRMV 436


>gi|313634896|gb|EFS01302.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 251

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 21/247 (8%)

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           G KR  I+++Q   I+ +Y   +  K  ++ D   FG+ +I V RPLR++F+L K  + R
Sbjct: 9   GNKRNEISEEQIMDIVSLYNETKQNKKIKIFDNEDFGFHKITVERPLRLNFMLSKERIER 68

Query: 498 LEADITWRKLSPLH---QSFWLDILKPM-MQQIYPYGWAESFVKESIKSNEAKTLKVK-- 551
           ++ +  ++ L+  +   ++    I + + +QQ        +   E IK+ E  T K+K  
Sbjct: 69  VKHEKVFQNLATSNKKGEAKEKQIEEGIALQQRIINTLNTNVSNEIIKNREIFTKKLKEI 128

Query: 552 -------ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604
                   + + + A +N    KD  AD           DT L +YE++P  + IQ YF 
Sbjct: 129 FKKEGITVTSTVLKAILNGLSEKDETADICMRNKKTVEVDTELRDYESIPLKKDIQKYFE 188

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
            EV PHVPDA+ID+           +VGYEI F R FY+Y P R  ++I  E++ +EA++
Sbjct: 189 IEVLPHVPDAWIDET--------ATKVGYEIPFTRCFYEYTPIRSSKEILKEIQKLEAEV 240

Query: 665 ATLLEEM 671
           A  L+++
Sbjct: 241 AEQLKKV 247


>gi|291277029|ref|YP_003516801.1| type I restriction-modification system M protein [Helicobacter
           mustelae 12198]
 gi|290964223|emb|CBG40072.1| type I restriction-modification system M protein [Helicobacter
           mustelae 12198]
          Length = 542

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 206/478 (43%), Gaps = 66/478 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L N IWK A +L G     DF + +L     R +   L    +A   K   +   + +
Sbjct: 37  SELHNTIWKVANELRGSVDGWDFKQYVLGMIFYRYISENLANYINAREGKPKFYEDLSDE 96

Query: 69  L-----ESFVKVAGY------SFYNT------SEYSLSTLGSTNTRNNLE-SYIASFS-D 109
           +     E  +K  G+       F N        E   +TLG  N   N+E S I + S D
Sbjct: 97  IAETVREDLIKAKGFFIPPSALFCNVVKNAPNDENLNTTLG--NIFKNIEKSSIGTGSED 154

Query: 110 NAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRR 165
           N K +F D D +S     +  EK   L K+    + ++L         V  + YE+L+  
Sbjct: 155 NVKGLFADLDVNSNKLGNSVDEKNKKLIKLLCAINSMQLGEIKQSGIDVFGDAYEYLMAM 214

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L     
Sbjct: 215 YASNAGKSGGEFFTPQEVSQLLAKIALHGQESVNK--------VYDPCCGSGSLLLQCAK 266

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSK 284
            +   G  + +      +GQE+   T+ +C   M +  +      D  K NI  G TL+ 
Sbjct: 267 VI---GKENVLKGF---YGQEINLTTYNLCRINMFLHDI------DYHKFNIAHGDTLTD 314

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   F   +SNPP+  KW  D D  +  + +    G+  P         + F MH+
Sbjct: 315 PKHRDDEPFDAIVSNPPYSTKWVGDDDPTLMGDERFRAAGKLAPK----GSADLAFTMHM 370

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L    +  G  AIV     L+  R+G+ E  IR +L+ +D ++ ++ LP++LFF T+
Sbjct: 371 LHSL----SNSGTCAIVEFPGVLY--RSGA-EKTIREYLINHDYVDCVIQLPSNLFFGTS 423

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           IAT + +L   K  +R  K   I+A+  +      GKK ++  +  R +IL  ++ RE
Sbjct: 424 IATAILVL---KKNKRDDKTLFIDASAEFVK---SGKKNKLT-EQNREKILQTWIQRE 474


>gi|229606285|ref|YP_002876933.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229607599|ref|YP_002878247.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229607706|ref|YP_002878354.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229608128|ref|YP_002878776.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229368940|gb|ACQ59363.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370254|gb|ACQ60677.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370361|gb|ACQ60784.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370783|gb|ACQ61206.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
          Length = 530

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 187/421 (44%), Gaps = 65/421 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S    +W  A  L G  + +++  ++L    L+ +    E  R  + +  L     +ID+
Sbjct: 18  SFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLE---KHIDM 74

Query: 70  ESFVKVAGYS----FYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAI---FEDF 118
                V  Y+    FY   E   S +     + ++    ++ +++     KA+     D 
Sbjct: 75  -----VPAYTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDN 129

Query: 119 DFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            FS     + K   L  +  N   +   H D     V+  +YE+ + +F     +G  +F
Sbjct: 130 YFSRLGLDVSKLAALIDVINNIDTLANPHED-----VVGRVYEYFLSKFAIAEGKGKGEF 184

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V+L  A L++P              +YDP CG+GG    +M  + +   + K  
Sbjct: 185 YTPKSIVNL-IAELIEPYKG----------KIYDPCCGSGGMFVQSMKFIENHKGNKKDI 233

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESD---PRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +   +GQE    T+ +    + IR + ++     +D   N  Q  TL  D        +
Sbjct: 234 SV---YGQEYTGATYKLAKMNLAIRGISANLGAAAKDTFAN-DQHETLKAD--------F 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF +K  +  D +  +H+       G   P  S+ +  +++H+ +KL    +  G
Sbjct: 282 IMANPPFNQKDWRASDELVDDHRWD-----GYETPPTSNANYGWILHMVSKL----SENG 332

Query: 355 RAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            A  +LS+  L    +G G E EIR+ L+EN+L+EAI+ LP ++F+ T+I+  LWIL+  
Sbjct: 333 VAGFILSNGAL----SGDGTEKEIRKKLIENNLVEAIILLPRNMFYTTDISVTLWILNKN 388

Query: 414 K 414
           K
Sbjct: 389 K 389


>gi|206577799|ref|YP_002240753.1| type I restriction-modification system, M subunit [Klebsiella
           pneumoniae 342]
 gi|206566857|gb|ACI08633.1| type I restriction-modification system, M subunit [Klebsiella
           pneumoniae 342]
          Length = 814

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 157/345 (45%), Gaps = 49/345 (14%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATAL 190
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V   LA  +
Sbjct: 115 LTKLVGIFEGLDLSSNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            + PD      +P    T+YDPTCG+G  L    +              L   GQE++  
Sbjct: 175 SITPD------TP-QDATVYDPTCGSGSLLLKVSDETRRG---------LSIFGQEMDNA 218

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK- 304
           T A+    M++         + +  I QG+TLS   +       K F + ++NPPF  K 
Sbjct: 219 TSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLKAFDFAVANPPFSNKN 271

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W    D      K     RF  G+P   +G   FL+H+   L+      G+ A++L    
Sbjct: 272 WTSGLDP-----KKDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGKGAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++       R+G + +
Sbjct: 323 LFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRKG-IFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
           I+A+        +G K R+ + D  R I+D++   R    +SRM+
Sbjct: 379 IDAS---RGFIKDGNKNRLRSRDIHR-IVDVFNHQRTVSGYSRMV 419


>gi|114330559|ref|YP_746781.1| N-6 DNA methylase [Nitrosomonas eutropha C91]
 gi|114307573|gb|ABI58816.1| N-6 DNA methylase [Nitrosomonas eutropha C91]
          Length = 542

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 213/477 (44%), Gaps = 93/477 (19%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----------REKYLAFGG 64
           ++K A+ L G+ + +D+  V L    L+ +  A E   + +          +++YLA   
Sbjct: 19  LFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAELAAESAAAAEDKDEYLA--- 75

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            NI            F+   E   S L +   R  + + I    D  +AI +D +    +
Sbjct: 76  DNI------------FWVPKEGRWSHLKANAKRPEIGTLI---DDAMRAIEKDNESLKGV 120

Query: 125 -----AR--LEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRF-GSEVSEGA 174
                AR  L K  +L ++    SGI ++   D   D V+  +YE+ + +F G+E   G 
Sbjct: 121 LPKDYARPALNKV-MLGELIDLISGIAMNEGGDKSKD-VLGRVYEYFLSQFAGAEGKRGG 178

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E F TPR VV +   +L           P   R +YDP CG+GG    +   V + G   
Sbjct: 179 E-FYTPRSVVQVLVQML----------EPYAGR-VYDPCCGSGGMFVQSEKFVLEHGG-- 224

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +I  I + +GQE    T  +    + +R ++SD R +      +GS   KD     RF +
Sbjct: 225 RIGDIAI-YGQESNYTTWRLAKMNLAVRGIDSDIRWN-----NEGS-FHKDELRDLRFDH 277

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPPF    W  D+          E  R+  G+P + + +  +L H+     L P G 
Sbjct: 278 ILANPPFNISDWGGDRLR--------EDPRWQFGVPPVGNANYAWLQHI--HWHLAPFG- 326

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A +VL++  + + +  SGE EIR+ ++E D ++ +V LP  LF+ T I   LW L+  
Sbjct: 327 -TAGVVLANGSMSSNQ--SGEGEIRKAMVEADAVDCMVTLPGQLFYSTQIPACLWFLARD 383

Query: 414 KT--------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           K+               +RRG+V  I+A ++ T +    + RR + D+  ++I D Y
Sbjct: 384 KSNGKRGSLSKGGETLRDRRGEVLFIDARNMGTLVD---RTRRELTDEDIQKIADTY 437


>gi|302347045|ref|YP_003815343.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302151002|gb|ADK97263.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 518

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 149/316 (47%), Gaps = 43/316 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++              +R +YDPT
Sbjct: 182 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV--------TLGHARLRNVYDPT 233

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A  G  ++I       GQE  P T+ +    ML+  ++    R   
Sbjct: 234 CGSGSLLLRA----ASIGHANEI------FGQEKNPTTYNLARMNMLLHGIKFSNFR--- 280

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K +D
Sbjct: 281 --IENGDTLEADAFGDTQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP--RKTAD 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
            +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ 
Sbjct: 336 YA--FILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T   IL  +K  +    +  I+A+  +  I+ + K R        ++I
Sbjct: 387 LPANIFYGTSIPT--CILVFKKCRKEDDSILFIDASKDFEKIKTQNKLRP----QHIQKI 440

Query: 453 LDIYVSR-ENGKFSRM 467
           +D Y  R E  K+S +
Sbjct: 441 VDTYRDRKEIEKYSHL 456


>gi|228475400|ref|ZP_04060119.1| type I restriction-modification system, M subunit [Staphylococcus
           hominis SK119]
 gi|228270583|gb|EEK12015.1| type I restriction-modification system, M subunit [Staphylococcus
           hominis SK119]
          Length = 518

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 115/484 (23%), Positives = 202/484 (41%), Gaps = 81/484 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   +W  A+DL G+    +F   IL     R L   +E       +  +     NID
Sbjct: 12  AELQKNLWSIADDLRGNMDANEFKNYILGMIFYRFLSEKIE------EQAQILLAEDNID 65

Query: 69  LES--------------FVKVAGYSF----------YNTSEYSLSTLGSTNTRNNLESYI 104
            E+              F+   GY                + +      +N   N+E+  
Sbjct: 66  YETAMADEDYRPVLEQEFISRIGYVIEPQYLFGHLVKKIEKQAFEMEDLSNAIKNIENST 125

Query: 105 ASF--SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNI 158
                 D+   +F+D D +S+    +   +  L+ K+    S +  +H D   D ++ + 
Sbjct: 126 RGHDSEDDFIHLFDDLDLNSSRLGNSNAARTKLISKVMMKISTLPFVHSDMEID-MLGDA 184

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDV-VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           YE+LI +F +   + A +F TP+ V   LA  + ++  D         I+++YDPTCG+G
Sbjct: 185 YEYLIGQFAASSGKKAGEFYTPQQVSTILAKIVTVNKKD---------IKSVYDPTCGSG 235

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L   +   A+   ++         GQE    T+ +    ML+  +     +     I+
Sbjct: 236 SLLL-RVGREANVRQYY---------GQEYNSTTYNLARMNMLLHDVNYANFK-----IE 280

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G T+     + +RF   ++NPP+  KW  D   +E    +     +G   PK S     
Sbjct: 281 NGDTIEDPAISDERFEAVVANPPYSAKWSSDPQFLE----DPRFSNYGKLAPK-SKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396
           F+ H+   L+      G  A+VL    LF G A   E  IR +L+ E + ++A++ LP +
Sbjct: 336 FIQHMIYHLD----DNGTMAVVLPHGVLFRGAA---EGVIREYLIKEKNYLDAVIGLPAN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + +   +K  E    V  I+A+  +     +GK +  +  +   +I++ Y
Sbjct: 389 LFFGTSIPTSILVF--KKCREDDDNVLFIDASQSF----EKGKNQNHLTTEDVEKIVETY 442

Query: 457 VSRE 460
            +RE
Sbjct: 443 KNRE 446


>gi|94263927|ref|ZP_01287730.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93455672|gb|EAT05851.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 425

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 182/426 (42%), Gaps = 55/426 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAV-- 55
           M    G   SL ++IW  A  + G      + + ILP    +RL C +   E  R A   
Sbjct: 1   MANNNGRGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRL-CDVFDDEVNRIAAEV 59

Query: 56  --REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDN 110
             R+K      ++  L  F           S +S+    S      + ++   IA  +  
Sbjct: 60  GSRKKAFQLVKADHKLVRFYLPLLPDDPEDSVWSVIRKLSDKIGEGVTTHMRAIAKENPG 119

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + I +  DF++T    R      L  + +  S   L  + V   ++   YE+LIR+F  
Sbjct: 120 LQGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFAE 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD---AMN 225
              + A +F TP +V  + + +L        +  PGM   +YDPTCG+GG L     AM 
Sbjct: 180 GGGQSAGEFYTPPEVGAIMSKVL--------QPEPGM--EIYDPTCGSGGLLIKCEIAME 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             A  G    + P+ + +GQE   +T A+    M+I  +E +        I+ G T    
Sbjct: 230 EAAK-GKKRTVAPLKL-YGQEYTADTWAMANMNMIIHDMEGE--------IEIGDTFKNP 279

Query: 286 LFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLF 338
            F  K+     F   ++NP + + W       E ++ N EL RF  G G P        +
Sbjct: 280 KFRNKQGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKFSADWGW 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPT 395
           + H+   L    N  GRAA+VL +     G   +G   E  +R+W +++DLIE+++ LP 
Sbjct: 335 VQHMHASL----NEKGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPE 390

Query: 396 DLFFRT 401
           +LF+ T
Sbjct: 391 NLFYNT 396


>gi|108563889|ref|YP_628205.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837662|gb|ABF85531.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 670

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 38/314 (12%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F SE  +    F TP +V  L + L          E+    +++YDPTCG+G  L  
Sbjct: 1   MRHFASESGKSKGQFYTPSEVSLLLSLL------LGIDENTRQDKSIYDPTCGSGSLLLK 54

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A +     G        L  +GQE +  T A+C   M+   L +    D++K     STL
Sbjct: 55  ASSLAGKNG--------LTIYGQEKDISTTALCKMNMI---LHNSADADIAKG--GSSTL 101

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDG 334
           S  LFT      K F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G
Sbjct: 102 SNPLFTTENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEKNG 161

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    I+ ++ L 
Sbjct: 162 DFAFLLHIIKSLK----NTGKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLA 214

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I   + +L  +    R+G V +I+A+      + +G K R+   D ++ I  
Sbjct: 215 PNLFYGTSIPACVIVLDKKNARARKG-VFVIDAS---KDFKKDGNKNRLREQDVQKMIDT 270

Query: 455 IYVSRENGKFSRML 468
               +E   +S+M+
Sbjct: 271 FNALKEIPYYSKMV 284


>gi|293400125|ref|ZP_06644271.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306525|gb|EFE47768.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 496

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 155/339 (45%), Gaps = 49/339 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD----V 183
           +++ ++ KI      I    +     V+ N YE+LI +F +   + A +F TP      +
Sbjct: 126 DRSAVMAKIIAALDEINFGVEDTKIDVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELL 185

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             LA   L D  DA             DPTCG+G  L    N+ A+  +++         
Sbjct: 186 CRLACLGLTDVKDAA------------DPTCGSGSLLLRLKNY-ANVRNYY--------- 223

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+ +    M++R +   P R+   NI  G TL  D F   +F   ++NPP+  
Sbjct: 224 GQELTSTTYNLARMNMILRGI---PYRNF--NIYNGDTLEHDYFGDMKFRVQVANPPYSA 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           KW  D   +E    N E G+  P     S     F+ H+ + ++      GRA ++L   
Sbjct: 279 KWSGDLSFMEDPRFN-EYGKLAPK----SKADFAFVQHMVHHMD----EDGRAVVLLPHG 329

Query: 364 PLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            LF G A   E  IR+ L++  ++++A++ LP +LFF T I   + +L  R+       +
Sbjct: 330 VLFRGAA---EEVIRKHLIQKLNVLDAVIGLPANLFFGTGIPVCVLVLK-RERNGNSDNI 385

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             I+A++ + +    GK + I+ +    +I++ Y  RE+
Sbjct: 386 LFIDASNDFEA----GKNQNILRECDIDKIVETYERRED 420


>gi|315158691|gb|EFU02708.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0312]
          Length = 531

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 43/312 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDP 212
           V+ + YE LI +F SE  + A +F TP  V  + A  + LD      KE P    +++DP
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQ-----KERP--FFSVFDP 225

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  + +  N++    +H   P  +  HGQEL   T+ +    +++  ++++     
Sbjct: 226 TMGSGSLMLNVRNYL----TH---PDNVKYHGQELNTTTYNLAKMNLILHGVDAE----- 273

Query: 273 SKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             NI+ G TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK
Sbjct: 274 EMNIRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK 329

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A+
Sbjct: 330 -SKADFAFLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAV 381

Query: 391 VALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + +P +LFF T+I T + +L  NR+T +    V  I+A+  +   +N+ K    ++++  
Sbjct: 382 IGMPANLFFGTSIPTTVIVLKKNRQTRD----VLFIDASREFVKGKNQNK----LSEENI 433

Query: 450 RQILDIYVSREN 461
           ++IL+ Y  R++
Sbjct: 434 QKILETYAERKD 445


>gi|218679450|ref|ZP_03527347.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium
           etli CIAT 894]
          Length = 120

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 75/114 (65%)

Query: 559 AFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDK 618
           A ++A   +D  A    D +G   PD  L ++E VP  E  + Y  REV+P VPDA++D+
Sbjct: 6   AILSALSERDESAAICLDGDGRPEPDPELRDHELVPLKEDWKSYVAREVTPFVPDAWVDE 65

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            + D+ DK +GRVGYEINFNR+FY+Y   R L +IDAELK +E  IA LL+E+A
Sbjct: 66  TYRDDADKGVGRVGYEINFNRYFYRYVAPRPLAEIDAELKTLETDIADLLKEVA 119


>gi|169350757|ref|ZP_02867695.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552]
 gi|169292620|gb|EDS74753.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552]
          Length = 546

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 41/310 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ N YE+LI +F SE  + A +F TP+ V  + T + +    A  +   G+  ++YDP 
Sbjct: 187 ILGNAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAI----AGQENKKGL--SVYDPC 240

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +  D       P  +  +GQEL   T+ +    M +  +  + ++   
Sbjct: 241 MGSGSLLLNAKKYSKD-------PRNIKYYGQELMTSTYNLARMNMFLHGVVPENQK--- 290

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             ++ G TL  D  T +   F   L NPP+  KW      ++ E        FG   PK 
Sbjct: 291 --LRNGDTLDADWPTDEETNFDMVLMNPPYSAKWSAAAGFLQDER----FSDFGVLAPK- 343

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++
Sbjct: 344 SKADYAFLLHGLYHLK----NSGTMAIVLPHGVLFRGVA---EGKIREKLLRSGNIYAVI 396

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP +LF+ T+I T + +L     + R G+ V  I+A+  +    N+GKK+  + D+   
Sbjct: 397 GLPANLFYNTSIPTCIVVLK----KHRDGRDVLFIDASKKF----NKGKKQNEMTDEHIE 448

Query: 451 QILDIYVSRE 460
            ++D+Y+ RE
Sbjct: 449 SVIDLYMKRE 458


>gi|156976837|ref|YP_001447743.1| type I restriction-modification system specificity subunit [Vibrio
           harveyi ATCC BAA-1116]
 gi|156528431|gb|ABU73516.1| hypothetical protein VIBHAR_05613 [Vibrio harveyi ATCC BAA-1116]
          Length = 873

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 151/332 (45%), Gaps = 49/332 (14%)

Query: 133 LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           L +  ++F  I L  +   +PD ++   YE+LI+ F     +   +F TP +VV L   +
Sbjct: 124 LVEFIQHFDSIPLSNEDFELPD-LLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVEI 182

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L           P     +YDPTCG+GG L  + N+V + G + K   +L   GQE    
Sbjct: 183 L----------EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLL---GQEDNGG 229

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKW 305
           T ++C   M++             +I+ G TL+  L   K      F   ++NPPF + +
Sbjct: 230 TWSICKMNMIL-------HGSGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNY 282

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K  D   KE       RF   +P+    G ++F+ H+   L+      G+AA+V+    
Sbjct: 283 KK-ADMQLKE-------RFNTFMPESGKKGDLMFVQHMVASLK----ANGKAAVVMPHGV 330

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF    G+ E   R+  +E  ++EA++ LP  LF+ T I   + ++ N+   E R  V  
Sbjct: 331 LFR---GAEERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVI-NKGGRENRDSVLF 386

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           INA   +     EGK +  +  +   +I  +Y
Sbjct: 387 INADREY----REGKNQNSLRPEDIEKITSVY 414


>gi|332877056|ref|ZP_08444807.1| type I restriction-modification system, M subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684946|gb|EGJ57792.1| type I restriction-modification system, M subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 517

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 155/317 (48%), Gaps = 45/317 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++    + L        R +YDPT
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTIGHERL--------RNVYDPT 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDL 272
           CG+G  L  A    A  G+  +I      +GQE  P T+ +    ML+  ++ SD +   
Sbjct: 233 CGSGSLLLRA----AHIGNAVEI------YGQEKNPTTYNLARMNMLLHGIKFSDFK--- 279

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K +
Sbjct: 280 ---IENGDTLEADAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP--RKTA 333

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIV 391
           D +  F++H+   L    + GG  A V     LF G A   E  IRR+L+E  + ++AI+
Sbjct: 334 DYA--FILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAII 384

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++ + K R     +  ++
Sbjct: 385 GLPANIFYGTSIPTCVLVL--KKCRKEDDNILFIDASKEFEKVKTQNKLR----PEHIKK 438

Query: 452 ILDIYVSR-ENGKFSRM 467
           I+D Y  R E  K+S +
Sbjct: 439 IVDTYRDRKEIEKYSHL 455


>gi|237751421|ref|ZP_04581901.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
 gi|229372787|gb|EEO23178.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
          Length = 534

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 225/499 (45%), Gaps = 78/499 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVRE------KYLA 61
            +L + IWK  ++L G     DF   +L F   R + E   E   + +RE       Y  
Sbjct: 18  TALHSTIWKIVDELRGSVDGWDFKMYVLGFLFYRFISENLAEHINANMRECGEIDFDYTH 77

Query: 62  FGGSNI----DL-ESFVKVAGYSFYNTSEYSLSTLGS------------TNTRNNLE-SY 103
                I    D+ E+ +   G+ F   SE  ++ L +            +N   N+E S 
Sbjct: 78  LSDEEIIKDNDIKENIINQKGF-FIMPSELFINVLQTHKSDTTNLNATLSNVFRNIEYSS 136

Query: 104 IASFSDNA-KAIFEDFDFSSTIARLEKAGL-----LYKICKNFSGIEL-HPDTVPDRVMS 156
           I + S+N  K +F D D +S+    E++ +     LYK+ K  S ++L + D   D    
Sbjct: 137 IDTKSENDFKGLFNDIDVNSSANLGERSLIKRNERLYKVMKEISKLDLDYSDNAID-AFG 195

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + Y  L+R +     +   +F TP++V HL   L+     +  K+S   +  +YD  CG+
Sbjct: 196 DAYVCLMRMYAGSAGKSGGEFFTPQEVSHLLARLV-----SYGKQS---VNKVYDSACGS 247

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
              L      +      +        +GQE+ P ++ +C   M++  +  +     + +I
Sbjct: 248 SSLLLQFAKVLGKNNVKNGF------YGQEINPTSYNLCRINMILHNVGYE-----NFDI 296

Query: 277 QQGST-LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPKIS 332
             G T L       + F   +SNPP+  KW  D + +          RF P     PK  
Sbjct: 297 SLGDTFLEPKHEDDEPFDAIVSNPPYSIKWAGDSNPLLINDP-----RFAPAGVLAPKFY 351

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH+ + L   P+G       +++ P+   R G+ E +IR++L++N+ I+ ++ 
Sbjct: 352 -ADLAFVMHMLSWLS--PSG----TCAIAAFPVVLYRGGA-EKKIRKYLVDNNFIDCLIQ 403

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF TNI T + +L   K  ++  KV  I++++L++ + N    + I+  +    I
Sbjct: 404 LPPNLFFGTNIVTSIIVL---KKNKQNNKVLFIDSSELFSKVTN----KNILEINHIITI 456

Query: 453 LDIYVSRENGK-FSRMLDY 470
           ++ Y  REN + FS ++++
Sbjct: 457 VEAYAKRENKEHFSSLVNF 475


>gi|255690134|ref|ZP_05413809.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260624418|gb|EEX47289.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 507

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 187/440 (42%), Gaps = 61/440 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDL 69
           L +F+W  A  L G      + + I P    +R+ +   E     V E  + + G  ++ 
Sbjct: 20  LKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGMQVED 79

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-ESYIASFSDNA------------KAIFE 116
                  G  + +  E +       N  N L E++IA    N             + IF 
Sbjct: 80  LPIRIPDGAHWRDVREVT------ENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFG 133

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++
Sbjct: 134 PKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKVCPADEMGQAYEYLVGKFADDAGNTAQE 192

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+  + 
Sbjct: 193 FYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEWQS 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
             +    GQE+   T ++    + +  +E     D S  I    TL    F      ++F
Sbjct: 243 VQVF---GQEVNGLTSSIARMNLYLNGIE-----DFS--IACADTLENPAFLDGSHLRKF 292

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              L+NPP+  K+W ++K        N + GR   G P        F+ H+   ++    
Sbjct: 293 DIVLANPPYSIKEWNREK------FMNDKWGRNFLGTPPQGRADYAFIQHILASMD---E 343

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEI-RRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GR AI+L      +G     E EI RR L+E DL+++++++  +LFF + +   + + 
Sbjct: 344 KTGRCAILLP-----HGVLNRMEEEIMRRKLIEEDLVDSVISIGKNLFFNSPMEACIMLC 398

Query: 411 SNRKTEERRGKVQLINATDL 430
           S++K  +R  +V  I ATDL
Sbjct: 399 SSKKPSDRIKQVLFIRATDL 418


>gi|292491160|ref|YP_003526599.1| type I restriction-modification system, M subunit [Nitrosococcus
           halophilus Nc4]
 gi|291579755|gb|ADE14212.1| type I restriction-modification system, M subunit [Nitrosococcus
           halophilus Nc4]
          Length = 739

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 209/470 (44%), Gaps = 65/470 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W++ ++L G    + +   +L    ++ +       R+A+    +  GGS  D
Sbjct: 6   SELYSSLWQSCDELRGGMDASQYKDYVLTLLFVKYMSDKYAGNRNAL--IVVPEGGSFAD 63

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR-L 127
           +   +K+ G       +   + +G     N+L+  I            DF+    + R  
Sbjct: 64  M---LKLKGDK--EIGDKINTIIGRLAEENDLKGVID---------VADFNDEDKLGRGK 109

Query: 128 EKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           E    L K+   F+ I+L  +    D ++ + YE+L+R F +E  +    F TP +V  +
Sbjct: 110 EMVDRLSKLLTIFNDIDLRANRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRI 169

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L    D    +      T+YDPTCG+G  L      VAD     + P  L   GQE
Sbjct: 170 MAKVLGISRDTRQDQ------TVYDPTCGSGSLLL----KVAD-----EAPRGLSIFGQE 214

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPF 301
           ++  T A+    M+   L   P    +  I   +TL+   +     + K F + ++NPPF
Sbjct: 215 MDNATSALARMNMI---LHDAP----TAEIWHANTLASPYWKHKDGSLKTFDFVVANPPF 267

Query: 302 GKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            +K W    D       +   GRF  G P   +G   FL+H+   L+      G+ A++L
Sbjct: 268 SQKNWTSGLDPA-----HDPFGRFELGAPPAKNGDYAFLLHIIKSLK----STGQGAVIL 318

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E+ IR+ L+   LI+ I+ LP +LF+ T I   + ++   +   R G
Sbjct: 319 PHGVLFRGGA---EAVIRKNLIRRGLIKGIIGLPPNLFYGTGIPACIIVIDKEQAPTRTG 375

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRML 468
            V +++A+  +     +G K R+ + D  + I+D++  +   + K++R++
Sbjct: 376 -VFMMDASKGYM---KDGNKNRLRSQDLHK-IVDVFTRQIDRDPKYARLV 420


>gi|121609378|ref|YP_997185.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
 gi|121554018|gb|ABM58167.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 526

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 205/494 (41%), Gaps = 71/494 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSAVREK--YLA 61
           A L   IW+ A DL G     DF   +L     R +   L     E  R+A   +  Y A
Sbjct: 10  AELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNEQERNAGDPEFEYAA 69

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSL----------STLGSTNTR--NNLESYI--ASF 107
              S  +      VA   FY    +            + L  T +R   ++ES    A  
Sbjct: 70  LNDSGAEFGRAETVAEKGFYILPSHLFDNVRKQARLDANLNETLSRVFADIESSANGADS 129

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNI-------Y 159
            D+ K +F+D D +S+      A    K+ K    I +L   + P +   N        Y
Sbjct: 130 EDDFKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSAPGKFSDNTIDLFGDAY 189

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L++ + S   +   +F TP++V  L   + +             I  +YDP CG+G  
Sbjct: 190 EYLMQMYASTAGKSGGEFYTPQEVSELLARITV--------VGKTEINKVYDPACGSGSL 241

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L       A    H  +       GQE+   T  +C   M +  +  +       N+  G
Sbjct: 242 LL----KFAKVLGHDAVRQGFF--GQEINLTTFNLCRINMFLHDVNYE-----KFNVAHG 290

Query: 280 STLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+    +  + F   +SNPP+  +W+ D + +          RF P   L   S   +
Sbjct: 291 DTLTDPAHWDDEPFEAIVSNPPYSIRWDGDANPLLINDP-----RFAPAGVLAPKSKADL 345

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++ ++ LP D
Sbjct: 346 AFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDTVIQLPPD 398

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IAT + +L   K  +R      ++A+  +    N+ K    + D  +++ILD Y
Sbjct: 399 LFFGTTIATCIIVL---KKSKRDNATLFVDASAEFMRSGNKNK----LTDAHQQKILDAY 451

Query: 457 VSREN-GKFSRMLD 469
           + R N   F+R+++
Sbjct: 452 IERRNIDHFARLVE 465


>gi|78358466|ref|YP_389915.1| type I restriction-modification system methylation subunit-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220871|gb|ABB40220.1| type I restriction-modification system methylation subunit-like
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 504

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 198/461 (42%), Gaps = 56/461 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL------ECALEPTRSAVREKYL 60
           S + L +++W  A  L G     D+ + I P    +RL      E A     S   ++Y 
Sbjct: 8   SQSELESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEELADALEESGGDQEYA 67

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A     +  +   ++   + +  +   +  +G    ++ L +   +  D    +F D  +
Sbjct: 68  A-----LPEQHRFQIPEDAHWKATRTKVKNVGKA-IQDALRAIETANPDTLYGVFGDAQW 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++     ++  +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 122 TNKDRLPDR--MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L        +  PG   ++YDPTCG+ G L  A+ H+      +K    L
Sbjct: 180 RTVVHLMTEML--------EPKPG--ESIYDPTCGSAGMLLSAVAHLK---RQNKEWRNL 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKR---FHYCL 296
              GQE    T A+    + +  +E D R      I +G TL+   F  G R   F   L
Sbjct: 227 RLFGQERNLLTSAIGRMNLFLHGIE-DFR------IVRGDTLANPAFVEGDRLMQFDVVL 279

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPP+  K+W++D  + +        GR   G P        F  H+   ++      GR
Sbjct: 280 ANPPYSIKQWDRDAWSADP------WGRNIYGTPPQGRADYAFWQHIIKSMKAK---SGR 330

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+     LF       ES +R  L+ +D++E ++ L  +LF+ + +   + I    K 
Sbjct: 331 CAILFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKP 386

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +ERR KV  INA +  T  R +      + DD  ++I+  Y
Sbjct: 387 KERRNKVLFINAVNEVTRERAQS----FLTDDHIQRIVAAY 423


>gi|294339001|emb|CAZ87346.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
 gi|294341828|emb|CAZ90257.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
          Length = 521

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 43/344 (12%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           A+LE  G + ++    S I     T    V+  +YE+ + +F S   +    F TP  VV
Sbjct: 133 AQLEP-GKMGELVDLVSTIGFGTGTQAKDVLGEVYEYFLGQFASAEGKKGGQFYTPASVV 191

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L          +P   + +YDP CG+GG    +   +   G       I   +G
Sbjct: 192 KVLVEVL----------APHQGK-VYDPCCGSGGMFVQSEKFIESHGGRFGDISI---YG 237

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-K 303
           QE  P T  +    + IR +      D +   +   T  +D     +  Y L+NPPF   
Sbjct: 238 QEANPTTWRLVAMNLAIRGM------DFNLGKEPADTFHRDQHPDLKADYVLANPPFNIS 291

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W  D+   +K        R+  G P  S+ +  +L H+   L    N  G+A +VL++ 
Sbjct: 292 DWGGDRLLDDK--------RWLYGTPNPSNANYAWLQHILWHL----NANGQAGVVLANG 339

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---EERRG 420
            + + +  + E  IR+ ++E D++E +VALP  LFF T I   LW L+  KT    +RRG
Sbjct: 340 SMSSNQ--NNEGTIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLTKSKTAHGRDRRG 397

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-IYVSRENGK 463
           +V  I+A  L    R E +  R+ +D+   +I   ++  R++G+
Sbjct: 398 EVLFIDARKLG---RMETRVNRVFDDEDVARIAGTVHRWRQDGE 438


>gi|260582434|ref|ZP_05850226.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094585|gb|EEW78481.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 514

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 198/485 (40%), Gaps = 78/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSN 66
           A L   IW+ A D+ G     DF + +L     R +         A  E   Y       
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVNYAKLPDEI 68

Query: 67  IDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD------------N 110
           I  E     +K  GY  Y  S+   + + + NT  NL + +   FSD            +
Sbjct: 69  ITPEIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNTELKQIFSDIENSATGYPSEQD 127

Query: 111 AKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIY 159
            K +F DFD +S     T+A  +K   L  + K  + ++       H D   D      Y
Sbjct: 128 IKGLFADFDTTSNRLGNTVA--DKNSRLAAVLKGVAELDFGDFEDNHIDLFGDA-----Y 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G  
Sbjct: 181 EFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A          H I       GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 337 AFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFYGTSIAVNILVLSKHKP---NTQTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN 461
             +E+
Sbjct: 443 ADKED 447


>gi|120401062|ref|YP_950891.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1]
 gi|119953880|gb|ABM10885.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1]
          Length = 544

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 192/478 (40%), Gaps = 76/478 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G     +E
Sbjct: 21  LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLDAEQIE 80

Query: 71  SFVK---------------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--KA 113
             ++                A + F   +   L   G    +N     I    D A    
Sbjct: 81  DLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKN-----IGQLIDEAMDAV 135

Query: 114 IFEDFDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           +  +     T+ RL         + G L  +  N +      D     +M  +YE+ +  
Sbjct: 136 MKANPTLQGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGDGRARDLMGEVYEYFLGN 194

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TP  VV +   +L           P   R +YDP CG+GG       
Sbjct: 195 FARAEGKRGGEFFTPPSVVKVIVEVL----------EPSRGR-VYDPCCGSGGMFVQTEK 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +   H   P  +  +GQE   ET  +    + I  +++          + G T ++D
Sbjct: 244 FIYE---HDGDPKEIAVYGQESIEETWRMAKMNLAIHGIDNK-----GLGARWGDTFARD 295

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +  Y L+NPPF  K W           +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 296 QHPDVQMDYVLANPPFNIKDW----------ARNEEDARWRFGVPPANNANYAWIQHILY 345

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GG+A +V+++  + +    +GE +IR  ++E DL+  ++ALPT LF  T I 
Sbjct: 346 KLA----SGGKAGVVMANGSMSSN--SNGEGDIRAQIVEADLVSCMIALPTQLFRSTGIP 399

Query: 405 TYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             +W  +  KT       +R G+V  I+A ++   +    +  R ++DD   +I D +
Sbjct: 400 VCVWFFAKDKTAGKQGSVDRSGQVLFIDAREMGYMVD---RAERALSDDDIVKIGDTF 454


>gi|93005780|ref|YP_580217.1| type I restriction-modification system, M subunit [Psychrobacter
           cryohalolentis K5]
 gi|92393458|gb|ABE74733.1| type I restriction-modification system, M subunit [Psychrobacter
           cryohalolentis K5]
          Length = 809

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 42/344 (12%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V  +  A +
Sbjct: 115 LSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSRI-LAKI 173

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           +  DD     +P +  T+YDP CG+G  L      V+D     + P  L  +GQE++  T
Sbjct: 174 IGVDD----NTP-LDATVYDPACGSGSLLL----KVSD-----EAPRGLTIYGQEMDFAT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKK-WE 306
            A+    M++             +I +G+TLS   F      K F + ++NPPF  K W 
Sbjct: 220 TALAKMNMILHGATG-------ADIYKGNTLSSPHFVEGNQLKTFDFIVANPPFSNKNWT 272

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
              +      ++ E  RF  G+P   +G   FL+H+   L+      G  A++L    LF
Sbjct: 273 SGLNP-----ESDEFDRFTWGIPPEKNGDYAFLLHIIKSLK----STGVGAVILPHGVLF 323

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++     + R      + 
Sbjct: 324 RGNA---EAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVIDKNTAQSRAKGDAGLF 380

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
             D       +G K R+ + D  + I+D++ S+ N   +SRM++
Sbjct: 381 MVDASRGYMKDGNKNRLRSQDIHK-IVDVFNSQLNLTGYSRMVE 423


>gi|317481426|ref|ZP_07940493.1| N-6 DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902411|gb|EFV24298.1| N-6 DNA methylase [Bacteroides sp. 4_1_36]
          Length = 517

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 145/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++              +R +YDPT
Sbjct: 181 ILGDAYEYMIGQFAAGAGKKAGEFYTPQEVSQILAEIV--------SIGHARLRNVYDPT 232

Query: 214 CGTGGFLTDA--MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CG+G  L  A  + H  D             +GQE  P T+ +    ML+  ++    + 
Sbjct: 233 CGSGSLLLRAAKVGHAVDI------------YGQEKNPTTYNLARMNMLLHGIKFSNFK- 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K 
Sbjct: 280 ----IENGDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP--KKT 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
           +D +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI
Sbjct: 333 ADYA--FILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + ++  +K  +    +  I+A+  +  ++ + K R        +
Sbjct: 384 IGLPANIFYGTSIPTCILVM--KKCRKEDDNILFIDASKEFEKVKTQNKLR----PQHIQ 437

Query: 451 QILDIYVSRE 460
           +I++ Y  RE
Sbjct: 438 KIVETYRDRE 447


>gi|307710636|ref|ZP_07647069.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK564]
 gi|307618579|gb|EFN97722.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK564]
          Length = 533

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A       +  T+YD T
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDQLGFTIYDAT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      +     +     FG   P+ 
Sbjct: 277 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFM----ADPRFSPFGKLAPQ- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 438

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           ILD Y SRE   KF+ +  Y 
Sbjct: 439 ILDAYKSREEIDKFAHLASYE 459


>gi|88810391|ref|ZP_01125648.1| type I restriction-modification system specificity subunit
           [Nitrococcus mobilis Nb-231]
 gi|88792021|gb|EAR23131.1| type I restriction-modification system specificity subunit
           [Nitrococcus mobilis Nb-231]
          Length = 481

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 149/344 (43%), Gaps = 46/344 (13%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           IEL  D     V   IYE L+ R  +EV  GA  + TPR V+      +           
Sbjct: 119 IELKVD-----VKGEIYEGLLERNAAEVKSGAGQYFTPRPVIEAIVKCV----------D 163

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPI--LVPHGQELEPETHAVCVAGM 259
           P +  T+ DP CGTGGFL  A +H+        K+  +     HG ++  E   +C   +
Sbjct: 164 PKIGETVCDPACGTGGFLLAAYDHLKTQTQDREKLRALRHTAFHGLDIVDEVVRLCAMNL 223

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK------WEKDKDAVE 313
            +  + +D     S  ++QG  L+ D   G+RF   L+NPPFGKK       E      E
Sbjct: 224 YLHGIGND-----SSPVEQGDALASD--GGERFKVVLTNPPFGKKSSYKVVGEDGSVTTE 276

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN-GRAGS 372
           +EH   E  +F       ++    FL H+   LE      GRA +VL  + LF  GRAG 
Sbjct: 277 REHYEREDFKF-----TTTNKQFNFLQHIMTILE----ANGRAGVVLPDNVLFEAGRAGE 327

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           G   IR+ LL+      ++ LPT +++   +   + +  +++   R  + + +   D  T
Sbjct: 328 G---IRKRLLQGFNFHTLLRLPTGIWYSPGVKANV-LFFDKRPASREVQTKALWVYDYRT 383

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           ++    K +R+ N D     +  Y +R+  +  R   Y     R
Sbjct: 384 NVHKTQKTKRLTNAD-LEDFVRCYQARQETERFRRFTYEELAQR 426


>gi|85716902|ref|ZP_01047867.1| type I restriction system adenine methylase [Nitrobacter sp.
           Nb-311A]
 gi|85696282|gb|EAQ34175.1| type I restriction system adenine methylase [Nitrobacter sp.
           Nb-311A]
          Length = 513

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 204/458 (44%), Gaps = 63/458 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           ++K A+ L G+ + +++  V L    L+ +  A E  R  +     A      D E ++ 
Sbjct: 17  LFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEAQRVRLTTDQYA---DAEDPEEYL- 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---------ASFSDNAKAIFEDFDFSSTIA 125
            A + F+   E   S L +   R  +   I         A  ++  K +        T+ 
Sbjct: 73  -AEHVFWVPKEARWSYLQANAKRPEIGKLIDEAMEAIEKAPSNEGLKGVLPKNYARPTLN 131

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDV 183
           +     +L ++   FS I +H  T   + ++  +YE+ +  F GSE   G E F TPR V
Sbjct: 132 KT----MLGELIDLFSNIGMHDSTDKAKDLLGRVYEYFLSGFAGSEGKRGGE-FFTPRSV 186

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V     +L           P   R +YDP CG+GG    +   + + G        +  +
Sbjct: 187 VRTLVEML----------EPYQGR-VYDPCCGSGGMFVQSEKFIEEHGGRRDA---IAVY 232

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG- 302
           GQE+   T  +    + ++ +++D R +      +GS   +D F   +  + L+NPPF  
Sbjct: 233 GQEINHTTWRLAKMNLAVQGIDADIRWN-----NEGS-FHRDEFADLKADFILANPPFNI 286

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
             W  ++ + ++        R+  G P  S+ +  +L H+ +   L P G   A +VL++
Sbjct: 287 SDWGGERLSEDQ--------RWKYGTPPKSNANFAWLQHILH--HLAPRG--TAGVVLAN 334

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EER 418
             + + +  SGE +IR+ ++E D+++A+VALP  LFF T I   LW+L+  K      +R
Sbjct: 335 GSMSSQQ--SGEGDIRKAMIEADVVDAMVALPGQLFFSTQIPACLWVLARDKGANGHRDR 392

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           RG++  I+A  L   +    + RR  + +   +I D Y
Sbjct: 393 RGEILFIDARKLGFMV---DRVRREFSAEDISRIADAY 427


>gi|160939420|ref|ZP_02086770.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437630|gb|EDP15392.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 522

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 49/339 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD----V 183
           +++ ++ KI  +   I    +     V+ N YE+LI +F +   + A +F TP      +
Sbjct: 152 DRSAVMAKIIASLDEINFSVEDTKIDVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELL 211

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             LA   L D  DA             DPTCG+G  L   +   A+  +++         
Sbjct: 212 CRLACLGLTDVKDAA------------DPTCGSGSLLL-RLKSYANVRNYY--------- 249

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+ +    M++R +   P R+   NI  G TL  D F   +F   ++NPP+  
Sbjct: 250 GQELTSTTYNLARMNMILRGI---PYRNF--NIYNGDTLEHDYFGDMKFRVQVANPPYSA 304

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           KW  D   +E    N E G+  P     S     F+ H+ + ++      GRA ++L   
Sbjct: 305 KWSGDLSFMEDPRFN-EYGKLAPK----SKADFAFVQHMVHHMD----EDGRAVVLLPHG 355

Query: 364 PLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            LF G A   E  IR+ L++  ++++A++ LP +LFF T I   + +L  R+  +    +
Sbjct: 356 VLFRGAA---EEVIRKHLIQKLNVLDAVIGLPANLFFGTGIPVCVLVLK-RERNDNADNI 411

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             I+A+  + +    GK + I+ +    +I++ Y  RE+
Sbjct: 412 LFIDASGDFEA----GKNQNILRECDIDKIVETYERRED 446


>gi|323189849|gb|EFZ75127.1| type I restriction-modification system, M subunit [Escherichia coli
           RN587/1]
          Length = 518

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 200/481 (41%), Gaps = 70/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    ++    L    
Sbjct: 8   AELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDDSV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEY-SLSTLGSTNTRNN--LESYIASFSDNA--------- 111
              D+ +  +K  GY  Y +  + +++   +TN R N  L S   +   +A         
Sbjct: 68  ITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEADI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S   RL     +K   L  + K   G++L   +     +  + YE LI  
Sbjct: 128 KGLFADFDTTSN--RLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTHVNKIYDPAAGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL++ 
Sbjct: 238 QFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNTLTEP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
            F  ++ F   +SNPP+  KW    D   +  E       RF P   L   S     F++
Sbjct: 287 HFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 340 HALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +L+  K   +    Q I+A+ L+    N      ++ D    QI+ ++ S+E
Sbjct: 393 TTIAVNILVLAKNK---KDTTTQFIDASGLFKKETN----NNVLLDAHIEQIMAVFDSKE 445

Query: 461 N 461
           N
Sbjct: 446 N 446


>gi|56697572|ref|YP_167940.1| type I restriction-modification system, M subunit [Ruegeria
           pomeroyi DSS-3]
 gi|56679309|gb|AAV95975.1| type I restriction-modification system, M subunit [Ruegeria
           pomeroyi DSS-3]
          Length = 900

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 197/469 (42%), Gaps = 67/469 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   ++  A+ L G    ++F + I     L+R     E  R  + ++  A G S  + E
Sbjct: 14  LERHLFAAADILRGKMDASEFKEYIFGILFLKRCSDVFEQQREKILKEQRALGRS--ETE 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA------------KAIFEDF 118
           +  +    S Y  + +           N++ + +A+  + A            + +    
Sbjct: 72  ALQRADHPSSYTKTFFVPPVARWDRLLNDVHANVANELNKALEGLENENHNALRGVLGHI 131

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +F+  +   E     L ++  +F+   L  +    PD ++   YE+LI  F     + A 
Sbjct: 132 NFARKVGESEIPDERLRRLISHFNKYRLLDEDFEFPD-LLGAAYEYLISEFADSAGKKAG 190

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV L   +L DP             +LYDPTCG+GG L     +         
Sbjct: 191 EFYTPRGVVQLMVRIL-DPQGGT---------SLYDPTCGSGGMLNQGYEYALQHDGRR- 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGK--R 291
               L  +GQE      A+C   +L+  +          +I+ G TL   K +  G   R
Sbjct: 240 ----LSLYGQEDNGAVWAICRMNLLLHGIPD-------ADIRNGDTLVDPKHIEDGHLMR 288

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELP 349
           F   ++NPPF + + K      +  + G+  RFG  P   K +D  ++F  H+   L+  
Sbjct: 289 FDRVIANPPFSQNYSK------RGIQFGDRFRFGWCPTTGKKAD--LMFAQHMLASLKQT 340

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+ A+V+    LF G     E +IR  LLE D IEA++ LP +LF+ T I   + +
Sbjct: 341 ----GKMAVVMPHGVLFRG---GEERKIRIALLEEDCIEAVIGLPQNLFYGTGIPACILV 393

Query: 410 LS--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +   + K + R+GKV  INA         EG+ +  I+ +   +I+  Y
Sbjct: 394 MRHPDGKPDARKGKVLFINA----DREHREGRAQNFIDPEHIEKIVSAY 438


>gi|330971618|gb|EGH71684.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 136

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 2/127 (1%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A F+W  A+ L GDFK + +G++ILPFTLLRR+EC L PT+  V ++  A  G    +  
Sbjct: 10  AAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLTPTKDEVIKQTFAQEGRPDTVRE 69

Query: 72  FV--KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
            +  + AG  F+N S  +L TL  T T  +L SY+ SFS +A+ IFE F F   + +L  
Sbjct: 70  MILLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFEDFVQQLAT 129

Query: 130 AGLLYKI 136
           A LLY++
Sbjct: 130 ANLLYQV 136


>gi|300866159|ref|ZP_07110878.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506]
 gi|300335838|emb|CBN56038.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506]
          Length = 527

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 48/310 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + RF +   +G E F TP+ VV L           L + +      +YDP 
Sbjct: 173 ILGRVYEYFLGRFANWEGKGGE-FYTPQSVVKL-----------LVEMTQPYQGKIYDPC 220

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V   G   K   IL+ +GQE    T  +C   + IR +E+       
Sbjct: 221 CGSGGIFVQSEKFVLAAGG--KANDILI-YGQESNQTTWRLCKMNLAIRGIEA------- 270

Query: 274 KNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            NI +    TL+ DL    +  + L+NPPF    WE         ++  +  R+  G+P 
Sbjct: 271 -NIGECNADTLNSDLHPDLKADFILANPPFNMSDWEG--------YRLHQDQRWHYGIPP 321

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ +  ++ H+   L    +  G A  VLS+  L +G+    E EIR  ++E+DLI+ I
Sbjct: 322 ASNANFAWIQHIIYHL----SDRGIAGFVLSNGSLNHGQV---EGEIRSKIIEDDLIDCI 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP+ LF+ T IA  LW ++  K +    +R G+   I A +     +   +  R I D
Sbjct: 375 VALPSQLFYTTQIAASLWFIAKNKRDDKWRDRAGESLFIYAANFG---QMADRTHRTIAD 431

Query: 447 DQRRQILDIY 456
           D+  +I + Y
Sbjct: 432 DEIAKIANTY 441


>gi|110639723|ref|YP_679933.1| type I restriction-modification system, M subunit [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110282404|gb|ABG60590.1| type I restriction-modification system, M subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 528

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 48/353 (13%)

Query: 114 IFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +FED D +ST  +L K       ++ K+  +   I+   + +   V+ + YE+LI +F S
Sbjct: 148 LFEDMDLNST--KLGKTPDARNAIIAKVLTHLDKIDFKLEDLESDVLGDSYEYLIGQFAS 205

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP+ V  +   ++      L        +++YDPTCG+G  L      V 
Sbjct: 206 GAGKKAGEFYTPQQVSKILAKIVTTEKHKL--------KSVYDPTCGSGSLLLRVAREVK 257

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D             +GQE+   T+ +    M++  +          +I+Q  TL      
Sbjct: 258 DVAKF---------YGQEMNRTTYNLARMNMILHGVHYRKF-----DIKQEDTLEHPQHM 303

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G++F   ++NPPF  +W  +   +  + +  + G+  P     S     F+ H+ + L  
Sbjct: 304 GQQFEAIVANPPFSAQWSANPLHLSDD-RFSQYGKLAPA----SKADYAFVQHMVHHLA- 357

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYL 407
                G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I T +
Sbjct: 358 ---ENGIMALVLPHGVLFRGGA---EQHIRKYLIEQKNYLDAVIGLPGNIFYGTSIPTCI 411

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            ++  +K  E    +  I+A+  +  +    K + I+ +    +I+D Y SR+
Sbjct: 412 LVI--KKCREMPDNILFIDASKEFEKV----KTQNILREKHIDKIVDTYRSRK 458


>gi|315152687|gb|EFT96703.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0031]
          Length = 531

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 187/407 (45%), Gaps = 58/407 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+     EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--APEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD      KE P    +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQ-----KERP--FFSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R+
Sbjct: 406 QTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERK 444


>gi|217425685|ref|ZP_03457176.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 576]
 gi|217391361|gb|EEC31392.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 576]
          Length = 870

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 150/325 (46%), Gaps = 46/325 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++      +         T+YD
Sbjct: 205 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAQII-----GISSTRTSSETTVYD 259

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      V D       P  +  +GQE +  T  +    M+   L  +P   
Sbjct: 260 PTCGSGSLLL----KVGDAA-----PTSVTLYGQEKDSATSGLARMNMI---LHDNP--- 304

Query: 272 LSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
            +  I QG+TL+   F      K F + ++NPPF  K+W    D       N   GRF  
Sbjct: 305 -TALIGQGNTLTDPKFRDGDRLKTFDFVVANPPFSDKRWSTGLDPF-----NDPYGRFDT 358

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P    G   +L+H+   L+      G+ A +L    LF G A   E+EIRR L+   
Sbjct: 359 FGVPPAKQGDYAYLLHIVRSLK----STGKGACILPHGVLFRGNA---EAEIRRNLIRYG 411

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LF+ T I   + ++     + R+G + +I+A+  +     +G K R+  
Sbjct: 412 YIKGIIGLPANLFYGTGIPACIIVVDKEDAQARKG-IFMIDASQGFI---KDGPKNRLRE 467

Query: 446 DDQRRQILDIYVSRENG--KFSRML 468
            D  R I+D++  ++    +++RM+
Sbjct: 468 QDIHR-IVDVFNRQDESDPRYARMV 491


>gi|223934049|ref|ZP_03626001.1| type I restriction-modification system, M subunit [Streptococcus
           suis 89/1591]
 gi|223897276|gb|EEF63685.1| type I restriction-modification system, M subunit [Streptococcus
           suis 89/1591]
          Length = 529

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 213/498 (42%), Gaps = 90/498 (18%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPTRSAVREK 58
           ++ N IW  A +L G+   +++   IL F   R L           E         V++ 
Sbjct: 7   AITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPGETVQDA 66

Query: 59  YL--AFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDNA- 111
           Y+  A G   ++ LE+     GY+      ++       N+    ++ ++    F+ N  
Sbjct: 67  YVREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDHFNANVE 126

Query: 112 ---------KAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    + +F D +       +ST+AR   A  L  I K    IE   D   D ++ 
Sbjct: 127 LNRDAMEDFRGVFNDINLGDSRLGNSTVAR---AKSLNSIVKLIDSIEYKNDEGKD-ILG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPT 213
            IYE+LI +F +   +   +F TP  V  +   ++   L+  D  F        ++YDPT
Sbjct: 183 EIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLEKSDTSF--------SVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +   G H K       +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-GQHIKF------YGQEMNTTTYNLARMNLMMHQVSYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + ++A++ LP +LF+ T I T + +   NR+T++    V  I+A+  +     +GK +  
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNRQTKD----VFFIDASKEF----EKGKNQNH 442

Query: 444 INDDQRRQILDIYVSREN 461
           ++DD   +I++ Y +R++
Sbjct: 443 LSDDMVEKIVETYHNRQS 460


>gi|254448598|ref|ZP_05062057.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
 gi|198261787|gb|EDY86073.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
          Length = 494

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 195/436 (44%), Gaps = 65/436 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVR-----EKYLA--- 61
           L + +W  AE L G    +D+ + I P    +RL +  LE    A+       +Y A   
Sbjct: 9   LEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIHEGDAEYAAMPM 68

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           F   +I  E+  +   ++  N  E    +L  + + N R                +F D 
Sbjct: 69  FHRFDIPQEARWEKVRHTSKNIGEAIQNALRLIEANNPR-------------LHGVFGDA 115

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +++   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F 
Sbjct: 116 QWANK-ERLPDH-LLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFY 173

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VVHL T ++           PG   T YDPTCGTGG L   +N V D  S  +   
Sbjct: 174 TNRTVVHLMTRIM--------GLKPG--ETAYDPTCGTGGML---LNAVMDLRSQGQEWR 220

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +  +GQE+   T A+    M +  +E         ++ +G TL++  F      K+F  
Sbjct: 221 GVHLYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDQLKQFDV 273

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +NPP+  KKW +DK A +        GR   G+P        F  H+   L+  P+  
Sbjct: 274 IFANPPYSIKKWNRDKFAADP------YGRNLYGVPPQGCADYAFYTHIIKSLK--PD-T 324

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA++     LF       E  IR+ ++E+D+IEA++ L   LF+ + + + + +L+  
Sbjct: 325 GRAAMLWPHGVLFR----DSEKSIRKQVIESDIIEAVIGLGPSLFYNSTMESCVVVLNKN 380

Query: 414 KTEERRGKVQLINATD 429
           K  + + +V  I+A++
Sbjct: 381 KRNKLKNRVLFIDASE 396


>gi|15839317|ref|NP_300005.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9107964|gb|AAF85513.1|AE004079_4 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 525

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 214/496 (43%), Gaps = 75/496 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLA 61
           A L   IW+ A DL G     DF   +L     R +   L    +A   +       Y  
Sbjct: 10  AELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRADDPDFDYAQ 69

Query: 62  FGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLE-SYIAS 106
              S+ D ES     VK  G+    +  +     G+    N          N+E S I S
Sbjct: 70  L--SDADAESGRAETVKEKGFYILPSELFVRVRAGAKCDDNLNETLSKVFANIERSAIGS 127

Query: 107 FSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------RVMSN 157
            S+ + K +F+D D +S+      A    K+ K    I   P T  +         +  +
Sbjct: 128 DSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGGFTDNTIDLFGD 187

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L++ + S   +   +F TP++V  L T + +             +  +YDP CG+G
Sbjct: 188 AYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITV--------VGKTEVNKVYDPACGSG 239

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L   +N V   G H ++      +GQE+   T+ +C   M +  +  +       +I 
Sbjct: 240 SLL---LNFVKVLG-HDQVRRGF--YGQEINLTTYNLCRINMFLHNVNYEKF-----HIA 288

Query: 278 QGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+    +  + F   +SNPP+  KW+ D +A+          RF P   L   S  
Sbjct: 289 HGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLINDP-----RFAPPGILAPKSKA 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A++ LP
Sbjct: 344 DLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAVIQLP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            DLFF T IAT + +L   K  +R      ++A+ L       G K ++    Q++ ILD
Sbjct: 397 ADLFFGTTIATCIIVL---KKSKRDNATLFMDASSLCV---RSGTKNKLTPAHQKK-ILD 449

Query: 455 IYVSREN-GKFSRMLD 469
            + +R++   F+R++D
Sbjct: 450 GFTARQDIEHFARLVD 465


>gi|254037298|ref|ZP_04871375.1| type I restriction-modification system [Escherichia sp. 1_1_43]
 gi|226840404|gb|EEH72406.1| type I restriction-modification system [Escherichia sp. 1_1_43]
          Length = 534

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 190/450 (42%), Gaps = 69/450 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN--IDLESF 72
           +W  A  L G  + +++  V+L    L+ +    E  R     K L   G    +D++ F
Sbjct: 17  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKR-----KQLIDNGQEAFVDMDVF 71

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-----------DFDFS 121
            +     F+   +   S + +   +++    IA   D A +  E           D  FS
Sbjct: 72  YQQDNV-FFLPPDARWSYVKARAKQDD----IAVIIDTALSTIEKRNASLTGALPDNYFS 126

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                +++   L    +N   +    +   + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 127 RQGLEVKRLASLIDSIENIDTLANECELTEEDLVGRVYEYFLGKFAASEGKGGGEFYTPK 186

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L  A +L+P              +YDP CG+GG    ++  V    SH      + 
Sbjct: 187 AVVTL-LAEMLEPYQG----------KIYDPCCGSGGMFVQSLKFVE---SHQGKSKDIA 232

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNP 299
            +GQEL   T+ +    + +R         LS N+ +    T   D     +  + ++NP
Sbjct: 233 IYGQELTSTTYKLAKMNLAVR--------GLSGNLGERPADTFFADQHPDLKADFIMANP 284

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PF  K W       E E  N    RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 285 PFNLKNWRN-----EAELTNDP--RFAGFRTPPTGNANYAWILHMLSKL----SEDGTAG 333

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-- 415
            VL++  + +    SGE EIR+ L+E+D IE ++ALP  LFF T I   +W +S  K   
Sbjct: 334 FVLANGSMSSNT--SGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCMWFISKSKKAN 391

Query: 416 -----EERRGKVQLINATDLWTSIRNEGKK 440
                 +RRG+   I+A +L T +    K+
Sbjct: 392 PQYGYRDRRGETLFIDARNLGTMVSRTQKE 421


>gi|77920515|ref|YP_358330.1| type I restriction-modification system methyltransferase subunit
           [Pelobacter carbinolicus DSM 2380]
 gi|77546598|gb|ABA90160.1| type I restriction-modification system methyltransferase subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 708

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 196/461 (42%), Gaps = 56/461 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL------ECALEPTRSAVREKYL 60
           S + L +++W  A  L G     D+ + I P    +RL      E A     S   ++Y 
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEELADALEESGGDQEYA 62

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A     +  +   ++   + +  +   +  +G    ++ L +   +  D    +F D  +
Sbjct: 63  A-----LPEQHRFQIPEDAHWKATRTKVKNVGKV-IQDALRAIETANPDTLYGVFGDAQW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++     ++  +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 117 TNKDRLPDR--MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L        +  PG   ++YDPTCG+ G L  A+ H+      +K    L
Sbjct: 175 RTVVHLMTEML--------EPRPG--ESIYDPTCGSAGMLLSAVAHLK---RQNKEWRNL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
              GQE    T A+    + +  +E D R      I +G TL+   F      K+F   L
Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGIE-DFR------IVRGDTLANPAFVEGDRLKQFDVVL 274

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPP+  K+W++D  + +        GR   G P        F  H+   ++      GR
Sbjct: 275 ANPPYSIKQWDRDAWSADS------WGRNLYGTPPQGRADYAFWQHIIKSMKAK---SGR 325

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+     LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K 
Sbjct: 326 CAILFPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKP 381

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +ERR KV  INA +  T  R +      + DD  + I+  Y
Sbjct: 382 KERRNKVLFINAVNEVTRERAQS----FLTDDHIQHIVAAY 418


>gi|242279139|ref|YP_002991268.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242122033|gb|ACS79729.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 856

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 115/484 (23%), Positives = 211/484 (43%), Gaps = 65/484 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +SL   ++K  + L G+ + +++ + I     L+RL       R+ + +   A G     
Sbjct: 8   SSLERKLFKACDILRGNMEASEYKEYIFGMLFLKRLSDQFHKDRAILAQDLAAKGIPEEA 67

Query: 69  LESFV-KVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED----FDFS 121
             + + K   Y+FY   ++ +        +  + L   +A+  +      +D     +F+
Sbjct: 68  KAALLDKRNQYTFYVPESARWEQIQHIKKDVGSGLNKALAAIEEANPETLQDVLKSINFN 127

Query: 122 STIA-RLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +  R      L +  ++F+ I L  D    PD ++   YE LI+ F     +   +F 
Sbjct: 128 RKVGQRTLDDSTLVEFIQHFNDIPLSNDDFEFPD-LLGAAYEFLIKHFADSAGKKGGEFY 186

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +VV     ++ +P + +          +YDPT G+GG L  +  +V +CG + K   
Sbjct: 187 TPTEVVRTLVEII-EPQEGM---------GIYDPTAGSGGMLIQSAKYVQECGGNVKN-- 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-------- 290
            L   GQEL   T ++C   M++  +       +S++I+Q   L + L   K        
Sbjct: 235 -LSLAGQELAGSTWSMCKMNMILHGI-------VSQDIRQEDVLKRPLHLKKDPDQNNQN 286

Query: 291 ----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSMLFLMHLANK 345
                +   ++NPPF + + K K+ + K+       RF   LP       ++F+ H+   
Sbjct: 287 HELKTWDRVIANPPFSQNYSK-KEMLFKD-------RFDVWLPTTGKKADLMFVQHMVAV 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G+ A+++    LF G     E   R   +E  ++EAIV LP+ LF+ T I  
Sbjct: 339 LK----NNGKCAVIMPHGVLFRG---GEERNCREKFIEKGILEAIVGLPSGLFYGTGIPA 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKF 464
            + +L N++    R +V  INA   +     EGK +  +  +   +I  +Y +R E  K+
Sbjct: 392 CILVL-NKEGAADRKEVLFINADREY----KEGKNQNKLRPEDIAKITHVYRNRLEVDKY 446

Query: 465 SRML 468
           SRM+
Sbjct: 447 SRMV 450


>gi|326386412|ref|ZP_08208035.1| type I restriction-modification system, M subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209073|gb|EGD59867.1| type I restriction-modification system, M subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 505

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 180/406 (44%), Gaps = 50/406 (12%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS--TIARL-E 128
           FV   G SFY+  E              LE+  ++     + +F + DF+S   + R+ +
Sbjct: 74  FVLPEGASFYDLHERRNEANIGELINEALEAIESTNIAKLEGVFRNIDFNSESNLGRVKD 133

Query: 129 KAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +   L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A +F TP  V  L
Sbjct: 134 RNRRLKNLLEDFAKPALDLRPSRVSEDIIGECYIYLISRFASDAGKKAGEFYTPSAVSGL 193

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             A L +P        PG   T+ DP CG+G  L  A   V   GS +        +GQE
Sbjct: 194 -LARLANP-------QPG--NTICDPACGSGSLLIQASQQV---GSDN-----FALYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW 305
           +   T A+    M +   ++  R +    +   + +  D     +F   L+NPPF   KW
Sbjct: 236 VNGATWALARMNMFLHAKDA-ARIEWCDTLNSPALVEGDHLM--KFDVVLANPPFSLDKW 292

Query: 306 EKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                    EH   +   RF  G+P  S G   F+ H+   +E+     GR A+++    
Sbjct: 293 GA-------EHAGDDPFKRFWRGIPPKSKGDYGFISHM---IEIAKRQTGRVAVIVPHGV 342

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRG 420
           LF G    GE  IR+ L+E +L++A++ LP +LF  T I   + +    + E      R 
Sbjct: 343 LFRG---GGEGTIRKALIEENLLDAVIGLPANLFTTTGIPVAILVFDRSREEGGANADRR 399

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFS 465
            V  I+A+   T     GK + ++++     I++ Y +R E  K+S
Sbjct: 400 DVLFIDASRDCTP----GKTQNLLDEGHIDHIVETYRARAEEPKYS 441


>gi|312952954|ref|ZP_07771810.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0102]
 gi|310629095|gb|EFQ12378.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0102]
          Length = 531

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 58/408 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+   + EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--SPEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 406 QTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 445


>gi|292492040|ref|YP_003527479.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291580635|gb|ADE15092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 720

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 124/546 (22%), Positives = 231/546 (42%), Gaps = 78/546 (14%)

Query: 10  SLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF-GGSN 66
            L + +W  A++L    D K +++   +L    L+  +       +A+ ++Y    GG  
Sbjct: 8   QLEDDLWSAADNLRANSDLKASEYSTPVLGLIFLKFADINYRRHEAAILKEYQKLKGGRR 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTI 124
               + + VA   FY       S L +     +    IA   + A    E++  +   ++
Sbjct: 68  EKSLNEIAVARCGFYLPDHARYSHLLNLPESQD----IAKAIEKAMEAIEEYKPELQGSL 123

Query: 125 A-----RLEKAG----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                 RL + G    L + + + F  I   PD     V   IYE+ + +F     +G  
Sbjct: 124 PKDGYYRLTRTGETEQLPFDLLRQFDNI---PDDASGDVFGQIYEYFLGKFALAEGQGGG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCG 231
           +F TPR VV L   ++ +P             T++DP CG+GG    +      H  +  
Sbjct: 181 EFFTPRSVVRLMVEII-EPHGG----------TVFDPACGSGGMFVQSAQFIERHREEFE 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-K 290
           +  +   + V  GQE   ET  +    + +  L           I QG +   D F    
Sbjct: 230 AQGEDTSVFVS-GQEKSSETVKLARMNLAVNGLRG--------QILQGISYYDDHFGSFG 280

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKE---------HKNGELGRFGPGLPKISDGSMLFLMH 341
           +F Y L+NPPF    E     VEK+          K  +  +   G   + + + L++  
Sbjct: 281 KFDYVLANPPFNVD-EVSLSGVEKDPRFNTYGIPRKKTKAKKSEQGKETVPNANYLWINL 339

Query: 342 LANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            A  L  P +   GGRAA+V+++S      A   E++IRR L+EN+LI  ++ LP+++F+
Sbjct: 340 FATSLREPDDKHPGGRAALVMANSA---SDARHSEADIRRTLIENNLIYGMLTLPSNMFY 396

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL------ 453
              +   LW     KT+ER   +  I+A +++T I    +  R  +++Q + I       
Sbjct: 397 TVTLPATLWFFDKGKTDER---ILFIDARNIFTPI---DRAHREFSEEQIQNIAIISRLH 450

Query: 454 ----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-TWRKLS 508
               D +++  +  F + +       R+++ +    ++ + D+ G   + + + TW+ L+
Sbjct: 451 KGRRDEFIALIDRYFEQGMARLVENRRQVEPVAEQLLAVLDDEAGKKAVASLVDTWKGLA 510

Query: 509 PLHQSF 514
           PL +++
Sbjct: 511 PLQKAW 516


>gi|333030656|ref|ZP_08458717.1| type I restriction-modification system, M subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741253|gb|EGJ71735.1| type I restriction-modification system, M subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 515

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 162/365 (44%), Gaps = 53/365 (14%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIR 164
           K +F DFD +ST  RL      K   L  + K    ++   D   +++    + YE LI 
Sbjct: 128 KGLFADFDTTST--RLGNTVENKNKRLAAVLKGVEELDF-GDFEENQIDLFGDAYEFLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   L      A+ K++   +  +YDP  G+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQQVSKLIAQL------AMHKQTS--VNKIYDPAAGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            H      +H I       GQE+   T+ +    M +  +  D       NI  G TL  
Sbjct: 237 KHF----DNHIIEDGFF--GQEINHTTYNLARMNMFLHNINYDKF-----NIALGDTLIN 285

Query: 285 DLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F   K F   +SNPP+  KW  D D            RF P   L   S     F++H
Sbjct: 286 PQFGDDKPFDAIVSNPPYSVKWIGDDDPTLINDD-----RFAPAGVLAPKSKADFAFVLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+ T
Sbjct: 341 ALSYL----SSRGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +IA  + +LS  K +    K Q I+A+  D +  + N  +    + D   ++I+ I+ S+
Sbjct: 394 SIAVNILVLSKHKADT---KTQFIDASGEDFFKKVTNNNE----LTDAHIKKIMQIFDSK 446

Query: 460 ENGKF 464
           EN K+
Sbjct: 447 ENVKY 451


>gi|322377802|ref|ZP_08052291.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M334]
 gi|321281225|gb|EFX58236.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M334]
          Length = 535

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 148/321 (46%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A       +  T+YD T
Sbjct: 177 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDQLGFTIYDAT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 231 MGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----N 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW  +   +     +     FG   P+ 
Sbjct: 279 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSANSGFL----NDPRFSPFGKLAPQ- 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 334 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 387

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T+     V  I+A+  +    ++GK + I+ D    +
Sbjct: 388 GLPANIFFNTSIPTTVIILKKNRTDR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 440

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE   KF+ +  Y 
Sbjct: 441 ILEAYKSREEMDKFAHLASYE 461


>gi|168698315|ref|ZP_02730592.1| type I restriction-modification system specificity subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 521

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 146/325 (44%), Gaps = 43/325 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   +L      +         T+YD
Sbjct: 136 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQVL-----GIRDAKTSANTTVYD 190

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      VAD     +  P L  +GQE +  T  +    M++         +
Sbjct: 191 PTCGSGSLLL----KVAD---EARTKPTL--YGQEKDAATSGLARMNMILHD-------N 234

Query: 272 LSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
               I QG+TL+    KD    K F Y ++NPPF  K+W    D ++  ++     RF  
Sbjct: 235 AGALIVQGNTLTDPKFKDGDALKTFDYVVANPPFSDKRWSTGLDPLKDTYE-----RFQH 289

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P    G   +L+H+   L+      GR A +L    LF G A   E+EIR+ L+   
Sbjct: 290 FGAPPAKQGDYAYLLHIVRSLK----STGRGACILPHGVLFRGNA---EAEIRKKLVAKR 342

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LF+ T I   + ++  +    R G V +I+A+        +G K R+  
Sbjct: 343 YIKGIIGLPANLFYGTGIPACIIVIDKQDAAARAG-VFMIDAS---AGFMKDGPKNRLRA 398

Query: 446 DDQRRQILDIYVSRENGKFSRMLDY 470
            D  + +      R   KFSR++ +
Sbjct: 399 RDIHKIVDAFTQGRTIPKFSRLVPF 423


>gi|281420896|ref|ZP_06251895.1| ribosomal protein L11 [Prevotella copri DSM 18205]
 gi|281405188|gb|EFB35868.1| ribosomal protein L11 [Prevotella copri DSM 18205]
          Length = 502

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 45/327 (13%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ IE+H       ++   YE+ +++F S   +   +F TP  +V     +L +P +   
Sbjct: 139 FTNIEMHDAGEEKDLLGRTYEYCLQQFASLEGKNGGEFYTPSCIVRTLVEIL-EPYEG-- 195

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                    +YDP CG+GG    +   +    G+  KI      +GQE  P+T  +    
Sbjct: 196 --------RVYDPCCGSGGMFVQSAKFIERHKGNLRKISI----YGQEANPDTWKMAHMN 243

Query: 259 MLIRRLESDPRRDLSKNI--QQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKE 315
           + IR L+++     +      Q  TL  D        + L+NPPF    W   + A++++
Sbjct: 244 LAIRGLDANLGNVFADTFYDDQHPTLKAD--------FILANPPFNLSDW--GQSALQED 293

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                  R+  GLP   + +  ++ H+ +   L PNG  +  +VL++  L       GE 
Sbjct: 294 V------RWQYGLPPAGNANFAWMQHMIH--HLAPNG--KIGLVLANGAL--SSQSGGEG 341

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ ++E DL+E IVALP+ LF+ T I   LW +S  K +  +GK   I+A +L T + 
Sbjct: 342 QIRQAIIEADLVEGIVALPSQLFYSTGIPVSLWFISRNKAQ--KGKTVFIDARNLGTMVT 399

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENG 462
              K R ++ D   ++I D + + + G
Sbjct: 400 R--KLRELMPDTDIKKISDTFHAFQQG 424


>gi|218263900|ref|ZP_03477848.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222411|gb|EEC95061.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii
           DSM 18315]
          Length = 510

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 193/468 (41%), Gaps = 64/468 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDL 69
           L +F+W  A  L G      + + I P    +R+ +   E     V E  + + G  ++ 
Sbjct: 20  LKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGMQVED 79

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-ESYIASFSDNA------------KAIFE 116
                  G  + +  E +       N  N L E++IA    N             + IF 
Sbjct: 80  LPIRIPDGAHWRDVREVT------ENVSNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFG 133

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  +  A++  + ++  + ++FS   L     P   M   YE+L+ +F  +    A++
Sbjct: 134 PKDGWTNKAKMPDS-IITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G   + 
Sbjct: 193 FYTNRTVVQLMAEIL----------QPKPNESIYDPTCGSGGMLVKCLDYLRNKGEEWQS 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
             +    GQE+   T ++    + +  +E     D S  I    TL    F      ++F
Sbjct: 243 VQVF---GQEVNGLTSSIARMNLYLNGVE-----DFS--IVCADTLEHPAFLDGSHLRKF 292

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              L+NPP+  K+W ++K        N + GR   G P        FL H+   +     
Sbjct: 293 DIVLANPPYSIKEWNREK------FMNDKWGRNFLGTPPQGRADYAFLQHIIASMN---E 343

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR AI+     LF       E E+R+ L+E D+++ I+ L  +LF+ + +   + I +
Sbjct: 344 TQGRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACILICN 399

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEG-----KKRRIINDDQRRQILD 454
             K   ++ +V +INA +  T    E        +RI+N  Q+ + LD
Sbjct: 400 CSKANSKKNRVLMINAVNEVTRKNAESMLLAEHIQRIVNAYQQNRELD 447


>gi|24379344|ref|NP_721299.1| type I restriction-modification system DNA methylase [Streptococcus
           mutans UA159]
 gi|24377269|gb|AAN58605.1|AE014930_7 type I restriction-modification system DNA methylase [Streptococcus
           mutans UA159]
          Length = 534

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 152/332 (45%), Gaps = 51/332 (15%)

Query: 101 ESYIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153
           ES I   S++A K +F+D D +S   RL     EK   L  I    +G++       D  
Sbjct: 124 ESAIGKDSEHAIKGLFDDVDTTSN--RLGGSVKEKNKRLSDILTGIAGLDFGTFEENDID 181

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+LI  + S   +   +F TP+ V  L   L++     + KE    I  +YDPT
Sbjct: 182 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLAQLVM-----VGKEH---INKVYDPT 233

Query: 214 CGTGGFLTDAM----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CG+G  L         H+ + G            GQE+    + +    M +  +  +  
Sbjct: 234 CGSGSLLLQMKKQFETHILEEGFF----------GQEINMTNYNLARMNMFLHNINYN-- 281

Query: 270 RDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
              + +I++G TL       +R F   +SNPP+  KW  D D      +     RF P  
Sbjct: 282 ---NFDIRRGDTLLNPQHLYERPFDAIVSNPPYSIKWIGDADPTLINDE-----RFAPAG 333

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S     F+MH  + L    +  GRAAIV      + G A   E  IR++L++N+ 
Sbjct: 334 KLAPKSKADFAFIMHSLSHL----SNKGRAAIVCFPGIFYRGGA---EKTIRQYLIDNNF 386

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +EA++ALP +LF+ T+IATY+ +L+  K E++
Sbjct: 387 VEAVIALPDNLFYGTSIATYILVLAKNKPEDK 418


>gi|37528149|ref|NP_931494.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787586|emb|CAE16691.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 518

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 198/484 (40%), Gaps = 68/484 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYL 60
           T   A L   IW+ A D+ G     DF + +L     R         +E    ++    L
Sbjct: 4   TQQRAELQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDESINYAEL 63

Query: 61  AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-----------ESYIASFS 108
           +      D+ +  +K  GY  Y  S+   +   + N  +NL           ES    + 
Sbjct: 64  SDAVITDDIKDDAIKTKGYFIY-PSQLFANIAENANKNDNLNKDLNSIFVAIESSANGYP 122

Query: 109 DNA--KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYE 160
             A  K +F DFD +S   RL     +K   L  + K  +G++    ++    +  + YE
Sbjct: 123 SEAEIKGLFADFDTTSN--RLGNTVKDKNTRLAAVLKGVAGLKFGQFESNKIDLFGDAYE 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L
Sbjct: 181 FLISNYAANAGKSGGEFFTPQHVSRLIAQLAM--------HGQTSVNKIYDPAAGSGSLL 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A  H       H I       GQE+   T+ +    M +  +  D       NI  G+
Sbjct: 233 LQAKKHF----DAHIIEDGFF--GQEINHTTYNLARMNMFLHNINYDKF-----NIMLGN 281

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL++  F   K F   +SNPP+  KW    D            RF P   L   S     
Sbjct: 282 TLTEPHFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 337 FVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISLAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D+   QI+ ++ 
Sbjct: 390 FFGTTIAVNILVLSKHKTDT---TTQFIDASPLFKKETN----NNILTDNHIEQIMQVFD 442

Query: 458 SREN 461
           S+++
Sbjct: 443 SKDD 446


>gi|313157419|gb|EFR56841.1| type I restriction-modification system, M subunit [Alistipes sp.
           HGB5]
          Length = 508

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 161/344 (46%), Gaps = 51/344 (14%)

Query: 108 SDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHL 162
           S++   IF +  F+S+      E+   L ++  +FS   L  D      + V+ + Y  L
Sbjct: 115 SEDGSGIFRNISFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLANNDVIGDAYMFL 174

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F S+  + A +F TP++V  L   L         K +PG    + DPTCG+G  L  
Sbjct: 175 IEKFASDAGKKAGEFFTPKEVSSLLARLT--------KSAPG--SRICDPTCGSGSLLIK 224

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKN--IQQ 278
           A   V   GS +        +GQEL   T A+ +  ML+   +S   R  D  +N  +++
Sbjct: 225 AGREV---GSDN-----FSLYGQELNGSTWALAMMNMLLHGFDSATIRWGDTLRNPKLKE 276

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G  L K       F   ++NPPF  +KW  D+ A      +    RF  G+P  S G   
Sbjct: 277 GDALMK-------FDTVVANPPFSLEKWGADEAA------DDPYNRFWRGIPPKSKGDWA 323

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ H+   LE+  N  G+  +V+    LF G   + E +IR+  +E +L+EAI+ LP +L
Sbjct: 324 FICHM---LEVA-NEHGKVGVVVPHGVLFRG---ASEGKIRQQTVEENLVEAIIGLPANL 376

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           F+ T I   + I +  KT      V  I+A+  + + +N+ + R
Sbjct: 377 FYGTGIPAAIAIFNKAKTTT---DVLFIDASREFENGKNQNRLR 417


>gi|312863190|ref|ZP_07723428.1| type I restriction-modification system, M subunit [Streptococcus
           vestibularis F0396]
 gi|311100726|gb|EFQ58931.1| type I restriction-modification system, M subunit [Streptococcus
           vestibularis F0396]
          Length = 534

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          TLYD T
Sbjct: 176 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDKQGFTLYDAT 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 230 MGSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE-----N 277

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      ++    +     FG   PK 
Sbjct: 278 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGKLAPK- 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 333 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 439

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           ILD Y SRE+  KF+ +  + 
Sbjct: 440 ILDAYKSREDMDKFAHLASFE 460


>gi|259501399|ref|ZP_05744301.1| type I restriction-modification system [Lactobacillus iners DSM
           13335]
 gi|259167148|gb|EEW51643.1| type I restriction-modification system [Lactobacillus iners DSM
           13335]
          Length = 502

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/476 (23%), Positives = 197/476 (41%), Gaps = 66/476 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED--- 117
              G   + +         F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIEAENK 111

Query: 118 -------FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                   +++S     +  G +  I  N   I++  +   + ++   YE+ I +F  + 
Sbjct: 112 TLKDVLPKNYASPDLDKQVLGDVVDIFTN--RIDMSDNKQSEDLLGRTYEYCIAKFAEKE 169

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-AD 229
            +   +F TP  +V    ++L   D+            +YD  CG+GG    +   + A 
Sbjct: 170 GKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAH 219

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G+   I      +GQE   +T  +    M IR +++D          Q  T + DL   
Sbjct: 220 SGNRGSIS----IYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPT 269

Query: 290 KRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
            +  + L+NPPF    W ++K  D V          R+  G P   + +  ++ H+ +  
Sbjct: 270 LKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNANYAWIQHMIH-- 317

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
            L PN  G+  +VL++  L       GE EIR+ ++E+DLIE I++LP  LF+  +I   
Sbjct: 318 HLAPN--GKIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVT 373

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           LW +S  K ++++GK   I+A  +   +    +K R   ++  +++ D + + +NG
Sbjct: 374 LWFIS--KNKKQKGKTVFIDARKMGHMV---DRKHRDFTEEDIQKLADTFEAFQNG 424


>gi|69245865|ref|ZP_00603682.1| Type I restriction-modification system M subunit [Enterococcus
           faecium DO]
 gi|257879183|ref|ZP_05658836.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,230,933]
 gi|257881998|ref|ZP_05661651.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,502]
 gi|257890013|ref|ZP_05669666.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,410]
 gi|260560170|ref|ZP_05832347.1| type I restriction-modification system M subunit [Enterococcus
           faecium C68]
 gi|293560248|ref|ZP_06676747.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1162]
 gi|294620836|ref|ZP_06700040.1| type I restriction-modification system, M subunit [Enterococcus
           faecium U0317]
 gi|314947719|ref|ZP_07851126.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
 gi|68195567|gb|EAN10009.1| Type I restriction-modification system M subunit [Enterococcus
           faecium DO]
 gi|257813411|gb|EEV42169.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,230,933]
 gi|257817656|gb|EEV44984.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,502]
 gi|257826373|gb|EEV52999.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,410]
 gi|260073737|gb|EEW62062.1| type I restriction-modification system M subunit [Enterococcus
           faecium C68]
 gi|291599621|gb|EFF30634.1| type I restriction-modification system, M subunit [Enterococcus
           faecium U0317]
 gi|291605792|gb|EFF35227.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1162]
 gi|313645699|gb|EFS10279.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
          Length = 530

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 58/408 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+   + EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--SPEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 406 QTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 445


>gi|283954322|ref|ZP_06371843.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794121|gb|EFC32869.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 227

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 26/223 (11%)

Query: 79  SFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
            F+N S+++L TL     N R N E+Y+  FS+N K I   F F + +  LE++ +L+ +
Sbjct: 11  GFFNYSQFNLQTLLNNPKNIRINFENYLDCFSENIKDIISKFKFKNQLDTLEESNILFGV 70

Query: 137 CKNFS------GIE--------LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + F       GIE        L    + +  M  ++E LIR+F  E +E A +  TPR+
Sbjct: 71  IERFCSPKVNFGIEDILDEKGNLIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPRE 130

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++ L T L+  P     K+   +I   YD  CG+GG LT++   + D     K    +  
Sbjct: 131 IIELMTHLVFLPVKEQIKKGTWLI---YDNACGSGGMLTESKEFITDPNGLIKSKANIHL 187

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS D
Sbjct: 188 YGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSND 223


>gi|89093018|ref|ZP_01165969.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92]
 gi|89082668|gb|EAR61889.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92]
          Length = 931

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 213/495 (43%), Gaps = 70/495 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---ECALEPTRSAVREKYLAFGGSN 66
            LA  IW++A  +    +  ++   IL F   + L   + +    +    +   A    +
Sbjct: 17  QLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIEQGMTPDDIKALAEDD 76

Query: 67  IDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            +   +++      +A  + ++T   S +    +N R+ L ++    +   K +FE   F
Sbjct: 77  TETVDYIRREKGFFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEGI-F 135

Query: 121 SSTIARLEKAGLLY-KICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSEG 173
           ++    L K G    K  K  S +      +P        V+  IYE+LI +F +   + 
Sbjct: 136 TTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGYDVLGYIYEYLIEKFAANAGKK 195

Query: 174 AEDFMTPRDVVHLA---TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           A +F TP +V  L    TA  L   D +          +YDPT G+G  L +  + VA  
Sbjct: 196 AGEFYTPHEVSLLMSEITAHELKHKDEI---------EIYDPTSGSGSLLINIGSSVA-- 244

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----- 285
             H K    +  + QEL+  T+ +    +++R +  D     +   + G TL  D     
Sbjct: 245 -KHAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPD-----NITTRNGDTLEDDWPYFD 298

Query: 286 ------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ +KWE      E +  +    RFG   PK +     FL
Sbjct: 299 ETNPQETYQPLYVDAVVSNPPYSQKWEP-----ENKENDPRYARFGLA-PK-TKADFAFL 351

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  +   L P+G     IVL    LF G     E EIR+ L+EN+ I+AI+ LP ++FF
Sbjct: 352 LH--DLYHLKPDG--IMTIVLPHGVLFRG---GEEGEIRKQLIENNHIDAIIGLPANIFF 404

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L  ++       V +++A+  +     EGK  ++ + D +R I D  ++R
Sbjct: 405 GTGIPTVILVLKQKR---ENNDVLIVDASKHFVK---EGKNNKLQDSDIKR-ITDAVINR 457

Query: 460 E-NGKFSRMLDYRTF 473
           + N KFS++   +T 
Sbjct: 458 QDNAKFSKVASKKTI 472


>gi|154252793|ref|YP_001413617.1| type I restriction-modification system, M subunit [Parvibaculum
           lavamentivorans DS-1]
 gi|154156743|gb|ABS63960.1| type I restriction-modification system, M subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 505

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 167/365 (45%), Gaps = 48/365 (13%)

Query: 112 KAIFEDFDFSS--TIARL-EKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F + DF+S   + R+ ++   L  + ++F+   ++L P  V + ++   Y +LI RF
Sbjct: 114 EGVFRNIDFNSEANLGRVKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  + A +F TP  +  L   L           +P    T+ DP CG+G  L  A   
Sbjct: 174 ASDAGKKAGEFYTPSAISRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEE 223

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   GS +        +GQE+   T A+    M +   ++  R +    +   + +  D 
Sbjct: 224 V---GSEN-----FALYGQEVNGATWALARMNMFLHAKDA-ARIEWCDTLNSPALVEGDH 274

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               +F   ++NPPF   KW  +    +      +  RF  G+P  S G   F+ H+   
Sbjct: 275 LM--KFDVVVANPPFSLDKWGAENADTD------QFKRFWRGIPPKSKGDYGFITHM--- 323

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +E+     GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I  
Sbjct: 324 IEIAKRQSGRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPV 380

Query: 406 YLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            + +    + +    E R  V  I+A+  +T     GK + ++++    ++L+ Y SR E
Sbjct: 381 AILVFDRSREQGGANEDRRDVLFIDASKEFTP----GKTQNVMDEAHIARVLEAYASRAE 436

Query: 461 NGKFS 465
             K+S
Sbjct: 437 TPKYS 441


>gi|315639285|ref|ZP_07894447.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315480611|gb|EFU71253.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 535

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 210/505 (41%), Gaps = 88/505 (17%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE---CALEPTRSAVREKYLAFGG-- 64
           +L + IWK A  L G+    DF   +L     R +     A    +  +    +  GG  
Sbjct: 14  ALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISPATMQTGGGG 73

Query: 65  ---------SNIDL-------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY 103
                    S+ D+       E+ +   G+  Y  S+   + L S     TN    L + 
Sbjct: 74  DNPNAYENLSDKDIDENEKSREAIIDAKGFFIY-PSQLFCNVLKSHAQDTTNLNQTLSNV 132

Query: 104 IASFSDNA---------KAIFEDFDFSST-------IARLEKAGLLYKICKNFSGIELHP 147
            A    +          K +F D D +S+       + R EK   LY++ +  + ++LH 
Sbjct: 133 FAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEK---LYQVMQEIATLDLHY 189

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    + YE+L+R +  +  +   +F TP++V +L   L+     +  K+S   + 
Sbjct: 190 SDNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSYLLARLV-----SYGKQS---VN 241

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      +                GQE+ P ++ +C   ML+  +  +
Sbjct: 242 KVYDPACGSGSLLLQFAKVLGIDNIKQGF------FGQEINPTSYNLCRINMLLHDIGFE 295

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                + +I  G TL +        F   +SNPP+  KW  D D      K     RF P
Sbjct: 296 -----NFDIALGDTLLEPKHADDEPFDAIVSNPPYPTKWIGDDDP-----KLINDPRFAP 345

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F MH+ + L    +  G  AIV     L+ G     E +IR++L++ 
Sbjct: 346 AGVLAPKSYADLAFTMHMLSWL----SPSGTCAIVEFPGVLYRG---GKEKQIRKYLIDQ 398

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ I+ LP +LFF TNIAT + +L   K  ++      I+A++ +T I     K+ I+
Sbjct: 399 NFIDTIIQLPENLFFGTNIATSIIVL---KKNKQSVATLFIDASEQFTKI----TKKNIL 451

Query: 445 NDDQRRQILDIYVSRENGK-FSRML 468
                  I++ Y  RE+ + FSR++
Sbjct: 452 ESTHINTIVEAYAKREDREHFSRLV 476


>gi|291514833|emb|CBK64043.1| type I restriction system adenine methylase (hsdM) [Alistipes
           shahii WAL 8301]
          Length = 508

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 162/345 (46%), Gaps = 51/345 (14%)

Query: 108 SDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHL 162
           S++   IF +  F+S+      E+   L ++  +FS   L  D      + V+ + Y  L
Sbjct: 115 SEDGSGIFRNISFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLENNDVIGDAYMFL 174

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F S+  + A +F TP++V  L   L         K +PG    + DPTCG+G  L  
Sbjct: 175 IEKFASDAGKKAGEFFTPKEVSTLLARLT--------KSAPG--SRICDPTCGSGSLLIK 224

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKN--IQQ 278
           A   V   GS +        +GQEL   T A+ +  ML+   +S   R  D  +N  +++
Sbjct: 225 AGREV---GSDN-----FSLYGQELNGSTWALAMMNMLLHGFDSATIRWGDTLRNPKLKE 276

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G  L K       F   ++NPPF  +KW  D+ A      +    RF  G+P  S G   
Sbjct: 277 GDALMK-------FDTVVANPPFSLEKWGADEAA------DDPYNRFWRGIPPKSKGDWA 323

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ H+   LE+  N  G+  +V+    LF G   + E +IR+  +E +L+EAI+ LP +L
Sbjct: 324 FICHM---LEVA-NEHGKVGVVVPHGVLFRG---ASEGKIRQQTVEENLVEAIIGLPANL 376

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           F+ T I   + I +  KT      V  I+A+  + + +N+ + R+
Sbjct: 377 FYGTGIPAAIAIFNKAKTTT---DVLFIDASREFENGKNQNRLRK 418


>gi|256841217|ref|ZP_05546724.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
 gi|256737060|gb|EEU50387.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
          Length = 510

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 192/468 (41%), Gaps = 64/468 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDL 69
           L  F+W  A  L G      + + I P    +R+ +   E     V E  + + G  ++ 
Sbjct: 20  LKGFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGMQVED 79

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-ESYIASFSDNA------------KAIFE 116
                  G  + +  E +       N  N L E++IA    N             + IF 
Sbjct: 80  LPIRIPDGAHWRDVREVT------ENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFG 133

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++
Sbjct: 134 PKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+  + 
Sbjct: 193 FYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEWQS 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
             +    GQE+   T ++    + +  +E     D S  I    TL    F      ++F
Sbjct: 243 VQVF---GQEVNGLTSSIAQMNLYLNGVE-----DFS--IACADTLEHPAFLDGSHLRKF 292

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              L+NPP+  K+W ++K        N + GR   G P        FL H+   +     
Sbjct: 293 DIVLANPPYSIKEWNREK------FMNDKWGRNFLGTPPQGRADYAFLQHIIASMN---E 343

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR AI+     LF       E E+R+ L+E D+++ I+ L  +LF+ + +   + I +
Sbjct: 344 TQGRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACILICN 399

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEG-----KKRRIINDDQRRQILD 454
             K   ++ +V +INA +  T    E        +RI+N  Q+ + LD
Sbjct: 400 CSKANSKKNRVLMINAVNEVTRKNAESMLLAEHIQRIVNAYQQNRELD 447


>gi|312970037|ref|ZP_07784219.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70]
 gi|310337535|gb|EFQ02646.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70]
          Length = 497

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 137/298 (45%), Gaps = 46/298 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F +   +G  +F TP+ VV L T +L +P              +YDP 
Sbjct: 122 LVGRVYEYFLGKFAATEGKGGGEFYTPKCVVTLLTEML-EPFQG----------KIYDPC 170

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+ G    ++  V    SH      +  +GQEL   T+ +    + IR         LS
Sbjct: 171 CGSAGMFVQSVKFVE---SHQGKSRDIALYGQELTATTYKLAKMNLAIR--------GLS 219

Query: 274 KNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-GPGLP 329
            N+ +    T   D     +  Y L+NPPF  K W  + +  +         RF G  +P
Sbjct: 220 ANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNEAELTKDP-------RFAGYRMP 272

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              + +  +++H+ +KL    +  G A  VL++  + +    SGE EIR  ++ENDLI+ 
Sbjct: 273 PTGNANYGWILHMLSKL----SANGTAGFVLANGSMSSNT--SGEGEIRAQMIENDLIDC 326

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRNEGKK 440
           ++ALP  LF+ T I   LW ++  K         +R+G+   I+A +L T I    K+
Sbjct: 327 MIALPGQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTKE 384


>gi|294619904|ref|ZP_06699280.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
 gi|291593841|gb|EFF25339.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
          Length = 531

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 187/403 (46%), Gaps = 50/403 (12%)

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST--- 123
           +D+  +  V  Y F   ++ +       N  N     +AS  +    +F+D D  S    
Sbjct: 85  VDILGYAIVPEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDLQSKKLG 144

Query: 124 IARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   + ++ K  + ++ L  D     V+ + YE LI +F SE  + A +F TP  
Sbjct: 145 TDEQQRNVTITEVIKKLNDVDVLEHDG---DVIGDAYEFLISQFASEAGKKAGEFYTPHM 201

Query: 183 VVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   P  + 
Sbjct: 202 VSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH---PDNVK 247

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNP 299
            HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F   + NP
Sbjct: 248 YHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDAVVMNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+   W  D   ++    +    R+G   PK S     FL+H    L+      G  AIV
Sbjct: 303 PYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETGTMAIV 353

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEER 418
           L    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR+T + 
Sbjct: 354 LPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQTRD- 409

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 410 ---VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 445


>gi|183597752|ref|ZP_02959245.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827]
 gi|188023032|gb|EDU61072.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827]
          Length = 504

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 179/407 (43%), Gaps = 53/407 (13%)

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           ++ +SF    G SF++  E        T     L + I   +   K +F+D  F++    
Sbjct: 70  LESQSFKIPTGSSFWDLYEARFEAGNGTRIDTALHA-IEEANTKLKGVFQDISFNTDKLG 128

Query: 127 LEKA--GLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F TP 
Sbjct: 129 DEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPA 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  L + +L          +P    T+ DP CG+G  L      V    +  K   +  
Sbjct: 189 EVSDLLSIIL----------APQEGDTICDPACGSGSLLMKCGKQVQKNFNGSKKYAL-- 236

Query: 242 PHGQELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            +GQE    T ++    M +      R+E  D  R+       G  L  D+ T       
Sbjct: 237 -YGQEAIGSTWSLAKMNMFLHGEDNHRIEWGDTIRNPKLQDANGGLLHFDVVT------- 288

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +NPPF   KW  +      + +N   GRF  G+P  + G   F+ H+   L+ P  G  
Sbjct: 289 -ANPPFSLDKWGHE------DAENDHFGRFRRGVPPKTKGDYAFISHMIETLK-PQTG-- 338

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R  +V+    LF     S E +IR+ L+E +L++A++ LP  LFF T I   + I    K
Sbjct: 339 RMGVVVPHGVLFRA---SSEGKIRQQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKKHK 395

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            ++    V  I+A+  + S    GK + ++ ++  ++I+D Y +RE+
Sbjct: 396 DDKN---VLFIDASREFKS----GKNQNVLTEENIQKIVDTYKARES 435


>gi|260495161|ref|ZP_05815289.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_33]
 gi|260197218|gb|EEW94737.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_33]
          Length = 520

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 203/495 (41%), Gaps = 73/495 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGGSN 66
           A L   IW  A DL G     DF + +L     R +   L     R  +      F  +N
Sbjct: 10  AELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGNSDFNYAN 69

Query: 67  ID-------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
           +         E  ++  G+ F   SE  ++     +   NL   + +   N         
Sbjct: 70  LSDEDAIVAKEDLIRTKGF-FILPSELFINVRRKADKDENLNVTLDTIFKNIENSANGTE 128

Query: 112 -----KAIFEDFDFSS------TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                K +F+D D +S       + R E    L     +    +   +T+      + YE
Sbjct: 129 SESDLKGLFDDIDVNSNKLGGTVVKRNENLVNLINGVGDMKLGDYQENTID--AFGDAYE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   ++ TP++V  L T L L             +  +YDP CG+G  L
Sbjct: 187 YLMGMYASNAGKSGGEYYTPQEVSELLTKLTL--------VGKTEVNKVYDPACGSGSLL 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 +      +         GQE+   T+ +C   M +  ++ D       +I  G 
Sbjct: 239 LKFAKILGKNNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAHGD 287

Query: 281 TLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   + 
Sbjct: 288 TLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKSKADLA 342

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+MH  + L   PNG   AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP +L
Sbjct: 343 FIMHSLSWL--APNG--TAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPDNL 395

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IAT + +L   K +    KV  I+A+  +  + N  K      DD    I++ + 
Sbjct: 396 FYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNKMTEKHIDD----IVEKFT 448

Query: 458 SRENGKF-SRMLDYR 471
            REN ++ S ++DY 
Sbjct: 449 KRENIEYISNLVDYE 463


>gi|257090571|ref|ZP_05584932.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|312905100|ref|ZP_07764221.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|256999383|gb|EEU85903.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|310631490|gb|EFQ14773.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|315579072|gb|EFU91263.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0630]
          Length = 530

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 58/408 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GYS   + EY  + L           N  N     ++S  +    +F+D D 
Sbjct: 81  IATIVDILGYSI--SPEYLFNVLADQAKQAIFQLNDLNKAFVQLSSTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 406 QTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 445


>gi|91205221|ref|YP_537576.1| Type I restriction-modification system, M subunit [Rickettsia
           bellii RML369-C]
 gi|91068765|gb|ABE04487.1| Type I restriction-modification system, M subunit [Rickettsia
           bellii RML369-C]
          Length = 504

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 159/359 (44%), Gaps = 47/359 (13%)

Query: 112 KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRF 166
           K +F + DF+S        E+   L  + ++F  +EL   PD V + ++   Y +LI RF
Sbjct: 115 KGVFRNVDFNSEFNLGKTKERNRRLKMLLEDFGKLELDLSPDRVNEDIIGECYIYLISRF 174

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  + A +F TP  V  L   L           +P     + DP CG+G  L  A   
Sbjct: 175 ASDAGKKAGEFYTPTAVSTLLAKL----------AAPKSGDIICDPACGSGSLLLRAAKE 224

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V D             +GQE+   T A+    M +   E          +     L  D 
Sbjct: 225 VGDNN--------YALYGQEMNNATWALAQMNMFLHS-EGGAHIYWGDTLNHPEILENDK 275

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               +F   ++NPPF  +KW  + +A    HK     RF  G+P  + G   F+ H+   
Sbjct: 276 LM--KFDIVIANPPFSLEKWGHE-NAANDNHK-----RFWRGIPPKTKGDYAFISHM--- 324

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +E+     GRAAIV+    LF    G  E  IR+ L+E++L++A++ LP +LF  T I  
Sbjct: 325 IEVTKPLSGRAAIVVPHGVLFR---GGTEGLIRQSLIEDNLLDAVIGLPANLFTSTGIPV 381

Query: 406 YLWILS-NRKT---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + +   +R+T     +R  V  I+A+  + +    GK +  + ++   +I+D Y +R+
Sbjct: 382 AILVFDRSRETGGQNNQRKDVLFIDASSSFKA----GKGQNFLEEEHINKIVDTYKNRK 436


>gi|229512706|ref|ZP_04402174.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TMA 21]
 gi|229350216|gb|EEO15168.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TMA 21]
          Length = 523

 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 165/361 (45%), Gaps = 43/361 (11%)

Query: 105 ASFSDNAKAIFEDFDFSST-IARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A  +D+   +F++ D  S  + +  +A   L+ ++  +   I+ H       ++ + YE+
Sbjct: 127 AESADDFNGLFDELDLQSNKLGKTPEARNKLIAQVLVHLDNIDFHLQESEIDILGDAYEY 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F S   + A +F TP+ V  L   L+         ++P  I+++YDPTCG+G  L 
Sbjct: 187 LIGMFASGAGKKAGEFYTPQMVSKLLAKLVT-------LDNPN-IKSVYDPTCGSGSLLL 238

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                VA   ++    P +  +GQE  P T+ +    M++  +    R D    I+   T
Sbjct: 239 ----RVAKEANN----PDIKYYGQERNPSTYNLARMNMIMHDVHY-KRFD----IENDDT 285

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L        RF   ++NPPF   W      +  + +  + G+  P     S     F++H
Sbjct: 286 LEAPQHLDLRFDAVVANPPFSANWSASPLHLSSD-RFADYGKLAPQ----SKADFAFVLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFR 400
           + ++L    N  G  A+VL    LF G A   E  IR+ LL E + ++ ++ LP ++FF 
Sbjct: 341 MLHQL----NDTGTMAVVLPHGVLFRGAA---EGHIRQHLLKEKNYLDMVIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  +   KV  I+A+  +    N  + R    ++  ++ILD    RE
Sbjct: 394 TSIPTCVLVF--KKNRQADDKVLFIDASQYYEKGTNNNQMR----EEDLQRILDAVTKRE 447

Query: 461 N 461
           N
Sbjct: 448 N 448


>gi|300214622|gb|ADJ79038.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 529

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 52/386 (13%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N   + +S LG  +  N++ES    F    + +F+D+D  S             I +  S
Sbjct: 102 NNHTFQVSQLG--DAFNSIESQGKEF----EGLFDDYDLYSKRLGNTAQKQSDTISEVLS 155

Query: 142 GI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            I +L     P+  + N YE+LI++F SE  + A +F TP+ V  L   L L   D    
Sbjct: 156 AIGKLEIVKTPEDTLGNAYEYLIKQFASESGKKAGEFYTPQKVSRLLARLTLVDKDY--- 212

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            + GM  T+YDPT G+G  L +   +V            +   GQE+   T+ +    M+
Sbjct: 213 -TDGM--TVYDPTMGSGSLLLNFRKYVEHSER-------ITYFGQEINTSTYNLARMNMI 262

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKD---KDAVEKE 315
           +  ++      +++ ++   TL +D  +     F   + NPP+  KW  +   KD     
Sbjct: 263 LHHVDV-----VNQKLRNNDTLDEDWPVEEITNFDAVVMNPPYSHKWSANAGFKD----- 312

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +     +G  LP  S     FL+H    L+      G  AIVL    LF G A   E 
Sbjct: 313 --DPRFSAYGV-LPPKSKADYAFLLHGYYHLK----HSGVMAIVLPHGILFRGAA---EG 362

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ LLEN  I+A++ LP +LF+ T+I T + +L   K +++   V  I+A+  +  ++
Sbjct: 363 KIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVVL---KKDKQDRDVLFIDASKNFKKVK 419

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN 461
            + + R    D+   +IL  Y  R++
Sbjct: 420 TQNELR----DEDVEKILTTYKERKD 441


>gi|329575569|gb|EGG57106.1| putative type I restriction-modification system, M subunit
           [Enterococcus faecalis TX1467]
          Length = 357

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 147/312 (47%), Gaps = 43/312 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA--TALLLDPDDALFKESPGMIRTLYD 211
           ++ + YE LI +F SE  + A +F TP  V  +   +  L   D  LF        +++D
Sbjct: 1   MIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARSVALGQEDKKLF--------SVFD 52

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  + +  N++         P  +  HGQEL   T       +++  +E++    
Sbjct: 53  PTMGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNHAKMNLILHGVEAE---- 101

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   P
Sbjct: 102 -DMNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGKLAP 156

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A
Sbjct: 157 K-SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYA 208

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ +P +LFF T+I T + IL  +K  + R  V  I+A+  +T  +N+ K    +  +  
Sbjct: 209 VIGMPANLFFGTSIPTTVIIL--KKNRDNR-DVLFIDASKEFTKGKNQNK----LAPEHI 261

Query: 450 RQILDIYVSREN 461
            +I+  Y+ R++
Sbjct: 262 DKIVSTYIERQD 273


>gi|302343960|ref|YP_003808489.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfarculus baarsii DSM 2075]
 gi|301640573|gb|ADK85895.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfarculus baarsii DSM 2075]
          Length = 528

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 198/461 (42%), Gaps = 56/461 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL------ECALEPTRSAVREKYL 60
           S + L +++W  A  L G     D+ + I P    +RL      E A     S   ++Y 
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEELADALEESGGDQEYA 62

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A     +  +   ++   + +  +   +  +G    ++ L +   +  D    +F D  +
Sbjct: 63  A-----LPEQHLFQIPEDAHWKATRTKVKNVGKA-IQDALRAIETANPDTLYGVFGDAQW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++     ++  +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 117 TNKDRLPDR--MLRELIEHFSSQTLSLANCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L        +  PG   ++YDPTCG+ G L  A+ H+      +K    L
Sbjct: 175 RTVVHLMTEML--------EPKPG--ESIYDPTCGSAGMLLSAVAHLK---RQNKEWRNL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKR---FHYCL 296
              GQE    T A+    + +  +E D R      I +G TL+   F  G R   F   L
Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGIE-DFR------IVRGDTLANPAFVEGDRLMQFDVVL 274

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPP+  K+W++D  + +        GR   G P        F  H+   ++      GR
Sbjct: 275 ANPPYSIKQWDRDAWSADP------WGRNIYGTPPQGRADYAFWQHIIKSMKAK---SGR 325

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+     LF       ES +R  L+ +D++E ++ L  +LF+ + +   + I    K 
Sbjct: 326 CAILFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKP 381

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +ERR KV  INA +  T  R +      + +D  ++I+  Y
Sbjct: 382 KERRNKVLFINALNEVTRERAQS----FLTNDHIQRIVSAY 418


>gi|110003975|emb|CAK98315.1| hsdm protein typeIrestriction enzyme [Spiroplasma citri]
          Length = 509

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 35/263 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F SE  + A +F TP+ V  L   L+         +    I+T+YDPT
Sbjct: 174 ILGDAYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYDPT 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +       KI  +   +GQEL+  ++ +    M++  L+ +      
Sbjct: 226 CGSGSLLLRVYKEL-------KIGHL---YGQELKTNSYNIARMNMMLHGLKYNKF---- 271

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI  G TL  D F G+ F   ++NPP+   W  ++  +  E        +G   PK + 
Sbjct: 272 -NIYNGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDER----FSAYGKLAPK-TK 325

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F+ ++  KL    +  G  A V+    LF G A   E  IR++++E + I+ I++L
Sbjct: 326 ADFAFIQNMIYKL----SDNGVMAAVIPRGILFRGNA---ELIIRKYMIEKNWIDNIISL 378

Query: 394 PTDLFFRTNIATYLWILSNRKTE 416
           P ++F+ T+I T + ++   K +
Sbjct: 379 PVNMFYGTSIPTCIIVMKKCKID 401


>gi|304315082|ref|YP_003850229.1| type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588541|gb|ADL58916.1| predicted type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
          Length = 590

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 170/374 (45%), Gaps = 45/374 (12%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  +   K + + FDF       E   +L ++ + FS  +L  +  PD ++ + YE ++
Sbjct: 191 LAELNPAFKDVVDAFDFVEFTQSQENREILRQLVELFSEKKL-TNVDPD-ILGDAYEWIL 248

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F    ++  E + TPR+V+ L   +L DP        PG   ++YDP   + G L  +
Sbjct: 249 RYFAPTKAKEGEVY-TPREVIRLLVEIL-DP-------KPG--ESVYDPASASNGMLIIS 297

Query: 224 MNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             +V +  G   +    L  +GQE+  +T A+    M I  ++         +I  G TL
Sbjct: 298 HKYVKETYGEAER----LFLYGQEVNRKTMALGSMNMYIHDIKD-------HHIAHGDTL 346

Query: 283 SKDLFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKISDGSM 336
               F       RF   ++NPP    W +D    E   K G+    RF  G         
Sbjct: 347 LYPKFKESDGIMRFDVVIANPP----WNQDGYG-EDTLKKGDYWRERFRYGFVNKQSADW 401

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H+           GR  +V+ +  LF G     E  IR  +LE+DLIEA++ LP  
Sbjct: 402 AWIQHMI----ASAKDDGRIGVVIDNGCLFRG---GREKSIRSAVLEDDLIEAVILLPEK 454

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T     + IL+  K EERRGKV  INA + +     E +K  I++D    +IL+ Y
Sbjct: 455 LFYNTGAPGAIIILNKDKDEERRGKVLFINAGEEYEK-HPEVRKLNILSDGNIERILEAY 513

Query: 457 VS-RENGKFSRMLD 469
              +++  FSR++D
Sbjct: 514 REFQDDDGFSRVVD 527


>gi|257900171|ref|ZP_05679824.1| type I restriction-modification system M subunit [Enterococcus
           faecium Com15]
 gi|293379346|ref|ZP_06625491.1| type I restriction-modification system, M subunit [Enterococcus
           faecium PC4.1]
 gi|257838083|gb|EEV63157.1| type I restriction-modification system M subunit [Enterococcus
           faecium Com15]
 gi|292642038|gb|EFF60203.1| type I restriction-modification system, M subunit [Enterococcus
           faecium PC4.1]
          Length = 531

 Score =  107 bits (266), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 187/408 (45%), Gaps = 58/408 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+     EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--APEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 406 QTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 445


>gi|319951306|ref|ZP_08025140.1| putative type I restriction/modification system DNA methylase
           [Dietzia cinnamea P4]
 gi|319435021|gb|EFV90307.1| putative type I restriction/modification system DNA methylase
           [Dietzia cinnamea P4]
          Length = 535

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 203/485 (41%), Gaps = 88/485 (18%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  V+L    L+ +  A E  R A+RE+     G +   E
Sbjct: 18  LKDTLWKAADKLRGSMDASQYKDVVLGLVFLKYVSDAFEERRDAIREE---LSGED---E 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFDFSSTIARLEK 129
           +++     +  +  EY    LGS       E+     S +AK I     + + +I  L  
Sbjct: 72  AYL---AETLEDADEY----LGSGVFWVPAEARWEYLSRHAKGIPASSTNDAQSIGELID 124

Query: 130 AGLLYKICKNFSGIELHP-----DTVPDR------------------------VMSNIYE 160
           A +   +  N S +   P     D V  R                        ++  +YE
Sbjct: 125 AAMRALMQANESLVGTLPVLFGRDNVEQRRLGELVDLFNAARFTGGGASKARDLLGEVYE 184

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + +F     +   +F TP  VV     +L +P              +YDP CG+GG  
Sbjct: 185 YFLDKFAKAEGKRGGEFYTPPVVVRTLVEIL-EPHSG----------RVYDPCCGSGGMF 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 +     H + P  +  +GQEL   T  +    + I  ++S          + G 
Sbjct: 234 VQTEKFLE---GHKEDPTNVAVYGQELNERTWRMAKMNLAIHGIDSQ-----GLGSRWGD 285

Query: 281 TLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           T ++D+    +  Y ++NPPF  K W + +D            R+  G+P   + +  ++
Sbjct: 286 TFARDIHPDMQADYVMANPPFNIKDWARREDDP----------RWVYGVPPKRNANYAWM 335

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H+ +KL   PNG   A +V+++  +    + SGE +IR+ ++E D+++ IVALP  LF 
Sbjct: 336 QHILSKL--APNG--EAGVVMANGTMTT--STSGEGDIRKAMVEGDVVQCIVALPGQLFR 389

Query: 400 RTNIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            T I   +W  +  KT       +RRG+V  I+A +L   I    +  R ++++  ++I 
Sbjct: 390 ATGIPVCVWFFAKNKTAGKGGSVDRRGQVLFIDARELGHMID---RVERTLSEEDLQRIA 446

Query: 454 DIYVS 458
           + + S
Sbjct: 447 ETFRS 451


>gi|294781970|ref|ZP_06747302.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481781|gb|EFG29550.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 520

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 44/318 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T L L             +  +YDP CG+G 
Sbjct: 185 YEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTL--------VGKTEVNKVYDPACGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 237 LLLKFAKILGKDNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 285

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 286 GDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQILIND-----SRFSPAGVLAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L   PNG   AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 341 LAFIMHSLSWL--APNG--TAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPD 393

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIINDDQRRQILD 454
           +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N  K   + IND     I++
Sbjct: 394 NLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNSNKMTEKHIND-----IVE 445

Query: 455 IYVSRENGKF-SRMLDYR 471
            +  REN ++ S ++DY 
Sbjct: 446 KFTKRENVEYISNLVDYE 463


>gi|293556630|ref|ZP_06675196.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1039]
 gi|291601216|gb|EFF31502.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1039]
          Length = 531

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 187/408 (45%), Gaps = 58/408 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+     EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--APEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  NR
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 406 QTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 445


>gi|331085151|ref|ZP_08334237.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407934|gb|EGG87424.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 531

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 38/309 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI +F SE  + A +F TP     +   +      AL  +       +YDP 
Sbjct: 172 VLGNAYEYLIGQFASETGKKAGEFYTPHGPAQILCRI------ALLGQEGKKGLQVYDPC 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  +         C ++ + P  +  +GQE+ P T+ +    M + R+  +     +
Sbjct: 226 MGSGSLMLS-------CKNYSEEPDYIKYYGQEIMPSTYNLARMNMFLHRVHPE-----N 273

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++++   TL  D  T +   F     NPP+  KW     A E   ++     +G  L   
Sbjct: 274 QHLRNADTLDADWPTDEDTEFDVVTMNPPYSAKWS----AAEGFKQDERFMDYGGKLAPK 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L       G  AIVL    LF G   + E EIR+ LLEN  I A++
Sbjct: 330 SKADYAFLLHGFYHL----RQSGTMAIVLPHGVLFRG---ASEGEIRKILLENGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++F+ T+I T + +L  +K  E R  V  I+A+  +     + KK+ ++ D+    
Sbjct: 383 GLPANMFYNTSIPTCIIVL--KKHREGR-DVLFIDASSQFV----KEKKQNVMQDEHIDH 435

Query: 452 ILDIYVSRE 460
           +L++Y +R+
Sbjct: 436 VLELYKNRK 444


>gi|153811904|ref|ZP_01964572.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174]
 gi|149832038|gb|EDM87123.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174]
          Length = 523

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 212/469 (45%), Gaps = 68/469 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +   G    D+
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH---GEKYADM 68

Query: 70  ESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDNAKAI---FEDFDFSS 122
           + F       FY   E    Y +      +    +++ + +   N  A+     D  +S 
Sbjct: 69  KPFYTQENV-FYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSR 127

Query: 123 T-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             I   + A LL +I +      ++ D   + ++  +YE+ + +F     +G  +F TP+
Sbjct: 128 LHIDTAKLASLLDEINR------INTDDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPK 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPIL 240
            +V+L  A +L+P D +          LYDP CG+GG    ++  V A  G+  K+    
Sbjct: 182 CIVNL-IAEMLEPYDGI----------LYDPCCGSGGMFVQSIKFVEAHSGNKKKVSI-- 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSN 298
             +GQE    T  +    + IR         +S N+ +   +T + D     +  + ++N
Sbjct: 229 --YGQEYTNTTFKLAKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADFIMAN 278

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF +K W  + + V+    NG        +P  S+ +  +++++ +KL    +  G A 
Sbjct: 279 PPFNQKQWRAENELVDDPRWNGY------EVPPTSNANYGWILNIVSKL----SQNGVAG 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE- 416
            +L++  L +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K   
Sbjct: 329 FLLANGALSDD---GTELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKAR 385

Query: 417 --ERRGKVQLI-NATD--LWTSIRNEG----KKRRIINDDQRRQILDIY 456
             E+ GK++   N  D  L+  +R  G    KK   + ++ R ++  +Y
Sbjct: 386 VVEQNGKLKRYRNREDEILFMDLRQMGSPYEKKYIELTEEDRAKVTSVY 434


>gi|237738765|ref|ZP_04569246.1| type I restriction-modification system [Fusobacterium sp. 2_1_31]
 gi|229423868|gb|EEO38915.1| type I restriction-modification system [Fusobacterium sp. 2_1_31]
          Length = 520

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 44/318 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T L L             +  +YDP CG+G 
Sbjct: 185 YEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTL--------VGKTEVNKVYDPACGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 237 LLLKFAKILGKDNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 285

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 286 GDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQILIND-----SRFSPAGVLAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L   PNG   AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 341 LAFIMHSLSWL--APNG--TAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPD 393

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIINDDQRRQILD 454
           +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N  K   + IND     I++
Sbjct: 394 NLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNSNKMTEKHIND-----IVE 445

Query: 455 IYVSRENGKF-SRMLDYR 471
            +  REN ++ S ++DY 
Sbjct: 446 KFTKRENVEYISNLVDYE 463


>gi|260905625|ref|ZP_05913947.1| N-6 DNA methylase [Brevibacterium linens BL2]
          Length = 532

 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 109/457 (23%), Positives = 185/457 (40%), Gaps = 58/457 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK A+ L G      +  VIL    L+ +  A E  +S +R +Y   G    D+ 
Sbjct: 17  LKATLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAFEEEQSLLRVEYEEQGIDEEDIA 76

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
             +       G   +   E +  T  + N +    S   +       I E  D       
Sbjct: 77  ELLLDTDTYVGEGIFLVPEAARWTFLAENAKGQAPSGAEAGRTVGALIDEAMDQLMRANP 136

Query: 120 -FSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVS 171
               T+ RL          L ++   FS        +     +M  +YE+ +  F     
Sbjct: 137 SLRGTLPRLYNKDNIDQRRLGELVDLFSSTRFSRQGEHKARDLMGEVYEYFLGEFARAEG 196

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV     +L           P   R +YDP CG+GG    +   + D  
Sbjct: 197 KRGGEFFTPRPVVRTMVEIL----------EPYSGR-VYDPCCGSGGMFVQSEKFIED-- 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            ++  P  +  +GQE   ET  +    + I  +E     +     + G T ++D+    +
Sbjct: 244 -NNGDPREIAVYGQESIEETWRMAKMNLAINGIEVQGLGE-----KWGDTFARDIHADTQ 297

Query: 292 FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
             Y L+NPPF  K W + +          E  R+  G+P   + +  ++ H+ +KL    
Sbjct: 298 MDYVLANPPFNLKAWARSE----------EDPRWTFGVPPEKNANYAWIQHILSKL---- 343

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  G+A +V+++  + +   G G+  IR  ++E DL+  ++ALPT LF  T I   +W  
Sbjct: 344 NDSGKAGVVMANGSMSSNTGGEGD--IRAQIVEADLVSCMLALPTQLFRSTGIPVCVWFF 401

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + +K   R G+V  I+A D+   I     +R + N+D
Sbjct: 402 AKKKG-ARAGEVLFIDARDMGHMISR--AERSLSNED 435


>gi|313904109|ref|ZP_07837489.1| type I restriction-modification system, M subunit [Eubacterium
           cellulosolvens 6]
 gi|313471258|gb|EFR66580.1| type I restriction-modification system, M subunit [Eubacterium
           cellulosolvens 6]
          Length = 531

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 38/308 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI +F SE  + A +F TP     +   +      A+  +       +YDP 
Sbjct: 172 VLGNAYEYLIGQFASETGKKAGEFYTPHGPAQILCRI------AMTGQENKKGLQVYDPC 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  +         C ++   P  +  +GQEL P T+ +    M +  +  +     +
Sbjct: 226 MGSGSLMLS-------CKNYSTEPDFIKYYGQELMPSTYNLARMNMFLHGILPE-----N 273

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++++ G TL  D  T +   F     NPP+  KW     A E   ++     +G  L   
Sbjct: 274 QHLRNGDTLDADWPTDEETEFDVVTMNPPYSAKWS----AAEGFKQDERFMDYGGKLAPK 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H      L P+G    AIVL    LF G A   E  IR+ LLEN  I A++
Sbjct: 330 SKADYAFLLH--GFYHLKPSG--TMAIVLPHGVLFRGAA---EGTIRQTLLENGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++F+ T+I T + +L  +K  E R  V  I+A++L+     + KK+ ++ ++   +
Sbjct: 383 GLPSNMFYNTSIPTCIIVL--KKHREGR-DVLFIDASNLY----EKDKKQNVMKEEHISK 435

Query: 452 ILDIYVSR 459
           +L++Y +R
Sbjct: 436 VLELYKNR 443


>gi|223940844|ref|ZP_03632674.1| type I restriction-modification system, M subunit [bacterium
           Ellin514]
 gi|223890494|gb|EEF57025.1| type I restriction-modification system, M subunit [bacterium
           Ellin514]
          Length = 496

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 154/357 (43%), Gaps = 53/357 (14%)

Query: 112 KAIFEDFDFSSTIARL----EKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEHL 162
           + +F + DF+S  A L    E+   L  + + F+  EL  D  P RV     + N Y++L
Sbjct: 113 EGVFRNIDFNSE-ANLGQTKERNKRLKSLLEKFAVEEL--DLRPSRVGKQDIIGNTYQYL 169

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F S+  +   +F TP +V  L   LL          +P     + DPTCG+G  L  
Sbjct: 170 IGHFASDAGKKGGEFYTPGEVSELLAKLL----------APKKGSRICDPTCGSGSLLIQ 219

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + V D             +GQE+   T A+C   ML+   ++  R +    I     +
Sbjct: 220 VGDEVGDND--------FSLYGQEMNGSTWALCRMNMLVHNKDA-ARIEWGDTINNPKLI 270

Query: 283 SKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            +D     +F   ++NPPF    W  D    +K H      RF  G+P  S G   F+ H
Sbjct: 271 ERDSLM--KFDIVVANPPFSLADWGADSADADKFH------RFHRGVPPKSKGDYAFISH 322

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   +E    G G+  ++     LF G A   E  IR+  +E +++EA++ LP  LFF T
Sbjct: 323 M---VETAIEGTGKVGVIAPHGVLFRGGA---EERIRKAFIEENVLEAVIGLPEKLFFGT 376

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            I   + I +  K  +    V  I+A+  +    N+ K    ++ D   +I+  Y +
Sbjct: 377 GIPAVILIFNKGKNTK---DVLFIDASREFVEDTNQNK----LSQDHITKIVATYAA 426


>gi|212691979|ref|ZP_03300107.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855]
 gi|212665371|gb|EEB25943.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855]
          Length = 517

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 154/318 (48%), Gaps = 47/318 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM--IRTLYD 211
           ++ + YE++I +F +   + A +F TP++V  +   ++          S G   +R +YD
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV----------SIGHQRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A    A  G+  +I      +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRA----AHIGNAVEI------YGQEKNPTTYNLARMNMLLHDI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K 
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP--RKT 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
           +D +  F++H+   L    + GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 333 ADYA--FILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++ + K R     +  +
Sbjct: 384 IGLPANIFYGTSIPTCVLVL--KKCRKEDDNILFIDASKEFEKVKTQNKLRP----EHIK 437

Query: 451 QILDIYVSR-ENGKFSRM 467
           +I+D Y  R E  K+S +
Sbjct: 438 KIVDTYRDRKEIEKYSHL 455


>gi|312872335|ref|ZP_07732405.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092158|gb|EFQ50532.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 535

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 49/312 (15%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ ++ F    ++   +F TP DVV L  A++ +P +           TLYDP CG+G
Sbjct: 172 VYEYFLKEFAVNATKEEGEFYTPHDVVKLIAAMI-EPFEG----------TLYDPACGSG 220

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
           G    +   V        +  I V +GQE E  T+ +    + +R         +S N+ 
Sbjct: 221 GMFIQSAELVK--SKQGNLNSINV-YGQEKEAATYRLAKMNLALR--------GISHNLG 269

Query: 277 -QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDG 334
               S+ + DL  G  F Y ++NPPF  K   D++      KN    R+   G P  S+ 
Sbjct: 270 GTNDSSFTHDLHKGLYFDYVMANPPFNLKGWYDENL-----KND--ARWADYGTPPESNA 322

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +++H+ + L+ P NG   A  +L++  L +    S   EIR+ L++ND +EAI+ LP
Sbjct: 323 NYAWILHILSHLK-PSNG--VAGFLLANGALND----SDTLEIRKKLIQNDKVEAIIVLP 375

Query: 395 TDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDL--WT--SIRNEGKKRRII 444
            +LF  T+I+  LWIL+  K   +      R +   I   DL  WT  +++ E KK+  +
Sbjct: 376 RELFITTDISVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRTWTENAVKGENKKKVRL 435

Query: 445 NDDQRRQILDIY 456
           + DQ ++  +IY
Sbjct: 436 SADQIQRAANIY 447


>gi|302024399|ref|ZP_07249610.1| type I restriction-modification system, M subunit [Streptococcus
           suis 05HAS68]
 gi|330833400|ref|YP_004402225.1| type I restriction-modification system, M subunit [Streptococcus
           suis ST3]
 gi|329307623|gb|AEB82039.1| type I restriction-modification system, M subunit [Streptococcus
           suis ST3]
          Length = 529

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 212/498 (42%), Gaps = 90/498 (18%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPTRSAVREK 58
           ++ N IW  A +L G+   +++   IL F   R L           E         V++ 
Sbjct: 7   AITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPGETVQDA 66

Query: 59  YL--AFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDNA- 111
           Y   A G   ++ LE+     GY+      ++       N+    ++ ++    F+ N  
Sbjct: 67  YAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDHFNANVE 126

Query: 112 ---------KAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    + +F D +       +ST+AR   A  L  I K    IE   D   D ++ 
Sbjct: 127 LNRDAMEDFRGVFNDINLGDSRLGNSTVAR---AKSLNSIVKLIDSIEYKNDEGKD-ILG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPT 213
            IYE+LI +F +   +   +F TP  V  +   ++   L+  D  F        ++YDPT
Sbjct: 183 EIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLEKSDTSF--------SVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +   G H K       +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-GQHIKF------YGQEMNTTTYNLARMNLMMHQVSYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + ++A++ LP +LF+ T I T + +   NR+T++    V  I+A+  +     +GK +  
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNRQTKD----VFFIDASKEF----EKGKNQNH 442

Query: 444 INDDQRRQILDIYVSREN 461
           ++DD   +I++ Y +R++
Sbjct: 443 LSDDMVEKIVETYHNRQS 460


>gi|257893689|ref|ZP_05673342.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,408]
 gi|257830068|gb|EEV56675.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,408]
          Length = 512

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 174/365 (47%), Gaps = 48/365 (13%)

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +AS  +    +F+D D  S        ++   + ++ K  + +E+        V+ + YE
Sbjct: 103 LASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYE 160

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            LI +F SE  + A +F TP  V  + A  + LD  +  F        +++DPT G+G  
Sbjct: 161 FLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSL 213

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +  N++    +H   P  +  HGQEL   T+ +    +++  ++++       N++ G
Sbjct: 214 MLNVRNYL----TH---PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNG 261

Query: 280 STLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK S     
Sbjct: 262 DTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFA 316

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 317 FLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANL 369

Query: 398 FFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           FF T+I T + +L  NR+T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y
Sbjct: 370 FFGTSIPTTVIVLKKNRQTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETY 421

Query: 457 VSREN 461
             R++
Sbjct: 422 AERKD 426


>gi|317180611|dbj|BAJ58397.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 527

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 168/370 (45%), Gaps = 61/370 (16%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  D +     V  + YE
Sbjct: 135 ENVKGLFADLDVNSNKLGSSHKNRVEK---LNKILQAIGGMQL-GDYLKSGIDVFGDAYE 190

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 191 YLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLL 242

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 243 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIVHG 290

Query: 280 STL----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
            TL     KD    + F   +SNPP+  KW  D + +    +     RF P   L   + 
Sbjct: 291 DTLLDPKHKD---DEPFDAIVSNPPYSTKWAGDNNPILINDE-----RFSPAGVLAPKNA 342

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++AL
Sbjct: 343 ADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIAL 395

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL
Sbjct: 396 PDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKIL 448

Query: 454 DIYVSRENGK 463
             Y+ R+  K
Sbjct: 449 QTYIERKEVK 458


>gi|218133858|ref|ZP_03462662.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991233|gb|EEC57239.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC
           43243]
          Length = 523

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 211/469 (44%), Gaps = 68/469 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +   G    D+
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH---GEKYADM 68

Query: 70  ESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDNAKAI---FEDFDFSS 122
           + F       FY   E    Y +      +    +++ + +   N  A+     D  +S 
Sbjct: 69  KPFYTQENV-FYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSR 127

Query: 123 T-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             I   + A LL +I +      ++ D   + ++  +YE+ + +F     +G  +F TP+
Sbjct: 128 LHIDTAKLASLLDEINR------INTDDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPK 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPIL 240
            +V+L  A +L+P D +          LYDP CG+GG    ++  V A  G+  K+    
Sbjct: 182 CIVNL-IAEMLEPYDGI----------LYDPCCGSGGMFVQSIKFVEAHSGNKKKVSI-- 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSN 298
             +GQE    T  +    + IR         +S N+ +   +T + D     +  + ++N
Sbjct: 229 --YGQEYTNTTFKLAKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADFIMAN 278

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF +K W  + + V+    NG        +P  S+ +  +++++ +KL    +  G A 
Sbjct: 279 PPFNQKQWRAENELVDDPRWNG------YEVPPTSNANYGWILNIVSKL----SQNGVAG 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE- 416
            +L++  L +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K   
Sbjct: 329 FLLANGALSDD---GTELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKAR 385

Query: 417 --ERRGKVQLINATD---LWTSIRNEG----KKRRIINDDQRRQILDIY 456
             E+ GK++     +   L+  +R  G    KK   + ++ R ++  +Y
Sbjct: 386 VVEQNGKLKRYRDREDEILFMDLRQMGSPYEKKYIELTEEDRAKVTSVY 434


>gi|295101280|emb|CBK98825.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 500

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 44/327 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ + +F  +  + A +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGKLAGEFYTPSCVVRTLVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   + + G +  I  I V  GQ+  P T 
Sbjct: 190 ---------QPFNGR-VYDPCCGSGGMFVQSAKFIENHGGN--INKISV-FGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK-- 309
            +    + IR +E+D    L K      T   D     +  + ++NPPF    W  DK  
Sbjct: 237 KMAQMNLAIRGIEAD----LGKF--NADTFFNDCHPQLKADFIMANPPFNLSGWGADKLV 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G P   + +  +L H+     L PNG  R  +VL++  L    
Sbjct: 291 DDV----------RWQYGTPPAGNANFAWLQHMI--WHLAPNG--RIGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE EIR+ ++  DL++ IVA+PT LF+ T I   LW L+  K ++++GK   I+A  
Sbjct: 335 QSGGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLA--KNKKQKGKTLFIDARK 392

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIY 456
           L T +    +K R + D+  ++I D Y
Sbjct: 393 LGTMVT---RKLRELTDEDIKKIADTY 416


>gi|258615581|ref|ZP_05713351.1| hypothetical protein EfaeD_07707 [Enterococcus faecium DO]
          Length = 411

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 48/365 (13%)

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +AS  +    +F+D D  S        ++   + ++ K  + +E+        V+ + YE
Sbjct: 3   LASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYE 60

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            LI +F SE  + A +F TP  V  + A  + LD  +  F        +++DPT G+G  
Sbjct: 61  FLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSL 113

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G
Sbjct: 114 MLNVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNG 161

Query: 280 STLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK S     
Sbjct: 162 DTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFA 216

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 217 FLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANL 269

Query: 398 FFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           FF T+I T + +L  NR+T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y
Sbjct: 270 FFGTSIPTTVIVLKKNRQTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETY 321

Query: 457 VSREN 461
             R++
Sbjct: 322 AERKD 326


>gi|167829997|ref|ZP_02461468.1| N-6 DNA methylase [Burkholderia pseudomallei 9]
          Length = 528

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 45/288 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F +   +    F TP  VV +   +L          +P   R +YDP 
Sbjct: 161 LLGEVYEYFLGQFATAEGKKGGQFYTPASVVRVLVEVL----------APHEGR-VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +    SH      +  +GQE  P T  +    + IR L +D    L 
Sbjct: 210 CGSGGMFVQSEKFIE---SHGGKADDISIYGQEANPTTWRLVAMNLAIRGLAAD----LG 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K  +   T  +D     R  Y L+NPPF    W  ++ A ++        R+  G+P   
Sbjct: 263 K--EPADTFHRDQHPDLRADYVLANPPFNISDWGGERLADDR--------RWAYGVPPAG 312

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+ + L   P G  +A +VL++  + + +  SGE EIRR ++E D+++ +VA
Sbjct: 313 NANYAWLQHILHHLS--PRG--QAGVVLANGSMSSSQ--SGEGEIRRAMVEADVVDVMVA 366

Query: 393 LPTDLFFRTNIATYLWILSNRK----------TEERRGKVQLINATDL 430
           LP  LFF T I   LW L+  K          + +RRG+V  I+A  L
Sbjct: 367 LPPQLFFNTQIPACLWFLAKDKSGTPVPGGKPSRDRRGEVLFIDARKL 414


>gi|167847545|ref|ZP_02473053.1| N-6 DNA methylase [Burkholderia pseudomallei B7210]
 gi|226198245|ref|ZP_03793816.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929765|gb|EEH25781.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 548

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 45/288 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F +   +    F TP  VV +   +L          +P   R +YDP 
Sbjct: 181 LLGEVYEYFLGQFATAEGKKGGQFYTPASVVRVLVEVL----------APHEGR-VYDPC 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +    SH      +  +GQE  P T  +    + IR L +D    L 
Sbjct: 230 CGSGGMFVQSEKFIE---SHGGKADDISIYGQEANPTTWRLVAMNLAIRGLAAD----LG 282

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K  +   T  +D     R  Y L+NPPF    W  ++ A ++        R+  G+P   
Sbjct: 283 K--EPADTFHRDQHPDLRADYVLANPPFNISDWGGERLADDR--------RWAYGVPPAG 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+ + L   P G  +A +VL++  + + +  SGE EIRR ++E D+++ +VA
Sbjct: 333 NANYAWLQHILHHLS--PRG--QAGVVLANGSMSSSQ--SGEGEIRRAMVEADVVDVMVA 386

Query: 393 LPTDLFFRTNIATYLWILSNRK----------TEERRGKVQLINATDL 430
           LP  LFF T I   LW L+  K          + +RRG+V  I+A  L
Sbjct: 387 LPPQLFFNTQIPACLWFLAKDKSGTPVPGGKPSRDRRGEVLFIDARKL 434


>gi|257440121|ref|ZP_05615876.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
 gi|257197473|gb|EEU95757.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
          Length = 500

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 44/327 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ + +F  +  + A +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGKLAGEFYTPSCVVRTLVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   + + G +  I  I V  GQ+  P T 
Sbjct: 190 ---------QPFNGR-VYDPCCGSGGMFVQSAKFIENHGGN--INKISV-FGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK-- 309
            +    + IR +E+D    L K      T   D     +  + ++NPPF    W  DK  
Sbjct: 237 KMAQMNLAIRGIEAD----LGKF--NADTFFNDCHPQLKADFIMANPPFNLSGWGADKLV 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G P   + +  +L H+     L PNG  R  +VL++  L    
Sbjct: 291 DDV----------RWQYGTPPAGNANFAWLQHMI--WHLAPNG--RIGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE EIR+ ++  DL++ IVA+PT LF+ T I   LW L+  K ++++GK   I+A  
Sbjct: 335 QSGGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLA--KNKKQKGKTLFIDARK 392

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIY 456
           L T +    +K R + D+  ++I D Y
Sbjct: 393 LGTMVT---RKLRELTDEDIKKIADTY 416


>gi|291515463|emb|CBK64673.1| type I restriction system adenine methylase (hsdM) [Alistipes
           shahii WAL 8301]
          Length = 517

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 47/318 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM--IRTLYD 211
           ++ + YE++I +F +   + A +F TP++V  +   ++          S G   +R +YD
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV----------SIGHQRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A N          I   +  +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAAN----------IGNAVDIYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K 
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP--RKT 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
           +D +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 333 ADYA--FILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T   IL  +K  +    +  I+A+  +  ++ + K R    +   +
Sbjct: 384 IGLPANIFYGTSIPT--CILVFKKCRKEDDNILFIDASKEFEKVKTQNKLR----EQHIQ 437

Query: 451 QILDIYVSR-ENGKFSRM 467
           +I++ Y  R E  K+S +
Sbjct: 438 KIVETYRDRKEIEKYSHL 455


>gi|157164462|ref|YP_001466969.1| type I restriction-modification system, M subunit [Campylobacter
           concisus 13826]
 gi|112800937|gb|EAT98281.1| type I restriction-modification system, M subunit [Campylobacter
           concisus 13826]
          Length = 517

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 199/483 (41%), Gaps = 78/483 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNI 67
           +L N IW  A ++ G     DF + +L     R +         A  +   Y + G   I
Sbjct: 9   ALQNQIWSIANEVRGAVDGWDFKQYVLGTLFYRFISENFTDYIEAGDDSIDYASMGDDEI 68

Query: 68  DLES---FVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFS--DNAK 112
           D E     ++  GY  Y +  +      ++N  N          ++E   A F    + K
Sbjct: 69  DDEQKKVIIEEKGYFIYPSQLFKNVVKNASNNANLNTDLDQIFKSIEGSAAGFESEQDIK 128

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYEH 161
            +F DFD +S   RL     +K   L  +    +G++       H D   D      YE 
Sbjct: 129 GLFADFDTTSN--RLGNSVADKNRRLAAVLNGVAGLDFGDFKDNHIDLFGDA-----YEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L + L +   +++ K        +YDP CG+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQNVSKLISELAMHGQESVNK--------IYDPACGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
            A          H++       GQE+   T  +    M +  +      + SK +I+ G 
Sbjct: 234 QAKKRF----DKHEVEQGFF--GQEINHTTFNLARMNMFLHNI------NYSKFHIELGD 281

Query: 281 TL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL    L   K F   +SNPP+   W    D            RF P   L   S     
Sbjct: 282 TLLDPKLQDDKPFDAIVSNPPYSINWIGSDDPTLIND-----ARFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+MH  + L    +  GRAAIV      + G A   E +IR +L++ + +E I+AL  +L
Sbjct: 337 FIMHALSYL----SAKGRAAIVSFPGIFYRGGA---EKKIREYLVKENFVETIIALAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IA  + +LS  K+E    K Q I+A++ +    N      ++  +  ++I++I+ 
Sbjct: 390 FYGTSIAVNILVLSKHKSE---NKTQFIDASEFFEKRTN----NNVLTSEHIKKIVEIFA 442

Query: 458 SRE 460
           S+E
Sbjct: 443 SKE 445


>gi|332364614|gb|EGJ42383.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1059]
          Length = 533

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          T+YD T
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDQQGFTIYDAT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      ++    +     FG   P+ 
Sbjct: 277 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLQ----DPRFSPFGKLAPQ- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDTHIEK 438

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE   KF+ +  Y 
Sbjct: 439 ILEAYKSREEIDKFAHLASYE 459


>gi|313898150|ref|ZP_07831689.1| putative type I restriction-modification system, M subunit
           [Clostridium sp. HGF2]
 gi|312957178|gb|EFR38807.1| putative type I restriction-modification system, M subunit
           [Clostridium sp. HGF2]
          Length = 538

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 38/266 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ ++ + +  ++   +F TP  VV L  A +++P             T+YDP 
Sbjct: 159 LIGRVYEYFLQIYAASGTKEDGEFYTPACVVKL-IAEMIEPYSG----------TVYDPC 207

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+GG    +M  V    G+  KI  I    GQE + ET  +C   + IR +  +     
Sbjct: 208 CGSGGMFVQSMKFVDRHNGNRQKISII----GQESQAETWRLCKMNLAIRGIAHNLGE-- 261

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG---L 328
               +  ST ++DL   K+  + ++NPPF  K W K+ + V      G+      G   +
Sbjct: 262 ----KNASTFTEDLHKDKKVDFIMANPPFNLKNWRKEDELV------GDPRFMKAGFSVM 311

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P +S+ +  +++H+ NKL++     G A  +L++  L    A   E  +R+ L+E D +E
Sbjct: 312 PPVSNANYAWILHMLNKLDV---NHGIAGFLLANGAL---EADGVEYTLRKELIEKDKVE 365

Query: 389 AIVALPTDLFFRTNIATYLWILSNRK 414
           AI+ LP D+F+  +++  LWI++  K
Sbjct: 366 AIIVLPRDMFYTVDLSCTLWIMNMNK 391


>gi|150006176|ref|YP_001300920.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|149934600|gb|ABR41298.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus
           ATCC 8482]
          Length = 517

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 47/318 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM--IRTLYD 211
           ++ + YE++I +F +   + A +F TP++V  +   ++          S G   +R +YD
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIV----------SIGHQRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A N          I   +  +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAAN----------IGNAVDIYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K 
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP--RKT 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
           +D +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 333 ADYA--FILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T   IL  +K  +    +  I+A+  +  ++ + K R    +   +
Sbjct: 384 IGLPANIFYGTSIPT--CILVFKKCRKEDDNILFIDASKEFEKVKTQNKLR----EQHIQ 437

Query: 451 QILDIYVSR-ENGKFSRM 467
           +I++ Y  R E  K+S +
Sbjct: 438 KIVETYRDRKEIEKYSHL 455


>gi|217974625|ref|YP_002359376.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS223]
 gi|217499760|gb|ACK47953.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS223]
          Length = 523

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 204/492 (41%), Gaps = 70/492 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSN 66
           A L   IW  A D+ G     DF + +L     R +    E   +   E   Y A   S+
Sbjct: 8   AELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEAYITGGDESVNYAAMDDSD 67

Query: 67  IDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNA----- 111
            ++    +  ++  GY F   S+   +   + +   NL + +A+       S N+     
Sbjct: 68  ENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLAAIFTAIENSANSYDSEK 126

Query: 112 --KAIFEDFDFSS-----TIARLEK--AGLLYKICK-NFSGIELHPDTVPDRVMSNIYEH 161
             K +F DFD +S     T+    K  A +L  +    F   E   +     +  + YE 
Sbjct: 127 DIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGDAYEF 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L 
Sbjct: 187 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLL 238

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A  H       H I       GQEL   T+ +    M +  +  D       NIQ G T
Sbjct: 239 QAKKHF----DAHIIEDGFF--GQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDT 287

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F   K F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 288 LTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAF 342

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 343 VLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 395

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+      Q I+A+ L+    N       ++++   QI+ ++ S
Sbjct: 396 FGTTIAVNILVLSKHKTDT---TTQFIDASGLFKKETN----NNTLSNEHIEQIIKVFAS 448

Query: 459 REN-GKFSRMLD 469
           +E+   F++ +D
Sbjct: 449 KEDVDHFAKSVD 460


>gi|210135043|ref|YP_002301482.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210133011|gb|ACJ08002.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 527

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 163/361 (45%), Gaps = 49/361 (13%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLI 163
           +N K +F D D +S     +   + G L KI +   G++L  D +     V  + YE+L+
Sbjct: 135 ENVKGLFADLDVNSNKLGSSHKNRVGKLTKILQAIGGMQL-GDYLKSGIDVFGDAYEYLM 193

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 194 AMYASNAGKSGGEFFTPQEVSELLAKIALHGQESVNK--------VYDPCCGSGSLLLQF 245

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTL 282
              + D              GQE+   T+ +C   M +  +      + SK +I  G TL
Sbjct: 246 SKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGDTL 293

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
                     F   +SNPP+  KW  D   +    +     RF P   L   +   + F 
Sbjct: 294 LDPKHEDDEPFDAIVSNPPYSTKWVGDNSPLLINDE-----RFSPAGVLAPKNAADLAFT 348

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LFF
Sbjct: 349 MHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFF 401

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y+ R
Sbjct: 402 GTSIATCILVLKKNKQDD---TTLFIDASKEFVK---EGKKNK-LKERNREKILQTYIER 454

Query: 460 E 460
           +
Sbjct: 455 K 455


>gi|197302014|ref|ZP_03167077.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC
           29176]
 gi|197298962|gb|EDY33499.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC
           29176]
          Length = 532

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 41/311 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ N YE+LI +F SE  + A +F TP+ V  + T + +   +    +  G+  ++YDP
Sbjct: 174 EILGNAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAISGQE----DKKGL--SVYDP 227

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  L +A  + +        P  +  +GQE    T+ +    M +  + ++     
Sbjct: 228 CMGSGSLLLNAKKYAS-------APEYIKYYGQEQNTSTYNLARMNMFLHGIVAE----- 275

Query: 273 SKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +++++ G TL  D  TG+   F+  L NPP+  KW      ++ E        +G   PK
Sbjct: 276 NQHLRNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDER----FSDYGVLAPK 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A+
Sbjct: 332 -SKADYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAV 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQR 449
           + LP +LF+ T+I T + +L     + R G+ V  I+A+  +    N+GKK+  + D+  
Sbjct: 384 IGLPANLFYNTSIPTCIIVLK----KHRDGRDVLFIDASKKF----NKGKKQNEMTDEHI 435

Query: 450 RQILDIYVSRE 460
            ++L +Y  R+
Sbjct: 436 DEVLALYSDRK 446


>gi|313887163|ref|ZP_07820859.1| putative type I restriction-modification system, M subunit
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923392|gb|EFR34205.1| putative type I restriction-modification system, M subunit
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 525

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 203/455 (44%), Gaps = 69/455 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID 68
           S+   +W++A  L G  + +++  V+L    L+   +C +E      R + +A G     
Sbjct: 15  SIEESLWESANKLRGSVEPSEYKHVVLSLIFLKYANDCFIER-----RAQLIAKGEERYV 69

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFSDNAK-------AIFEDFDF 120
            E+    A   FY T     S L     + ++   I A+ ++  +       A+  ++  
Sbjct: 70  DEAAFYTATNVFYLTEHSRWSYLMEHAKQPDIAIKIDAALAEVERVNETLKGALPSNYYS 129

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDF 177
           S  + + + + LL +I K         DT+ DR   ++  +YE+ I +F     +G  ++
Sbjct: 130 SLGLDQTKLSALLDEINK--------IDTLKDREHDLIGRVYEYFISKFAIAEGKGKGEY 181

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V+L  A ++ P +            +YDP CG+GG    +M  +    +HH   
Sbjct: 182 YTPKSIVNL-IAEMIQPYEG----------KIYDPCCGSGGMFVQSMKFIE---AHHGNK 227

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQE    T+ +    + IR + S+             T   D     +  + ++
Sbjct: 228 KNISVYGQEYTNTTYKLAKMNLAIRGIASNL------GAVAADTFHNDQHKDLKADFIMA 281

Query: 298 NPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPF +K W    + V+           G  +P  S+ +  +++++ +KL +     G A
Sbjct: 282 NPPFNQKSWRAKNELVDDPR------WAGYEVPPTSNANYGWILNIVSKLSV----NGVA 331

Query: 357 AIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +L++  L    +G G E  IR+ L+EN L+EAIV LP ++F+ T+I+  LWIL+    
Sbjct: 332 GFLLANGAL----SGEGTEQAIRKQLIENKLVEAIVILPRNMFYSTDISVTLWILN---- 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             R  K + IN        R+  ++R+++  D R+
Sbjct: 384 --RNKKARTINQNGALVKYRD--RERKVLFMDLRQ 414


>gi|291551220|emb|CBL27482.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus torques L2-14]
          Length = 523

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 211/469 (44%), Gaps = 68/469 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +   G    D+
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH---GEKYADM 68

Query: 70  ESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDNAKAI---FEDFDFSS 122
           + F       FY   E    Y +      +    +++ + +   N  A+     D  +S 
Sbjct: 69  KPFYTQENV-FYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSR 127

Query: 123 T-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             I   + A LL +I +      ++ D   + ++  +YE+ + +F     +G  +F TP+
Sbjct: 128 LHIDTAKLASLLDEINR------INTDDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPK 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPIL 240
            +V+L  A +L+P D +          LYDP CG+GG    ++  V A  G+  K+    
Sbjct: 182 CIVNL-IAEMLEPYDGI----------LYDPCCGSGGMFVQSIKFVEAHSGNKKKVSI-- 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSN 298
             +GQE    T  +    + IR         +S N+ +   +T + D     +  + ++N
Sbjct: 229 --YGQEYTNTTFKLAKMNLAIR--------GISANLGEMAANTFTNDQHKDLKADFIMAN 278

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF +K W  + + V+    NG        +P  S+ +  +++++ +KL    +  G A 
Sbjct: 279 PPFNQKQWRAENELVDDPRWNGY------EVPPTSNANYGWILNIVSKL----SRNGVAG 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE- 416
            +L++  L +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K   
Sbjct: 329 FLLANGALSDD---GTELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKAR 385

Query: 417 --ERRGKVQLINATD---LWTSIRNEG----KKRRIINDDQRRQILDIY 456
             E+ GK++     +   L+  +R  G    KK   + ++ R ++  +Y
Sbjct: 386 VVEQNGKLKRYRDREDEILFMDLRQMGSPYEKKYIELTEEDRAKVTSVY 434


>gi|314950056|ref|ZP_07853344.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
 gi|313643614|gb|EFS08194.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
          Length = 492

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 164/363 (45%), Gaps = 48/363 (13%)

Query: 104 IASFSDNAKAIFEDFDF-----SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           I   S+N + +FED D       ST  +  K   +  + K   G+ +        V+ + 
Sbjct: 126 IEQSSENFENLFEDIDLYSKKLGSTPQKQNKT--IADVMKELEGLNMAGHA--GDVLGDA 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F SE  + A +F TP+ V  L T ++L   +    +  G   ++YD T G+G 
Sbjct: 182 YEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKE----DKKGF--SVYDATMGSGS 235

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +     SH   P  +   GQEL   T+ +    M++  +        ++++  
Sbjct: 236 LLLNAKKY-----SHQ--PGTISYFGQELNTSTYNLARMNMILHGVPI-----ANQHLHN 283

Query: 279 GSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW  DK  ++    +     +G   PK S    
Sbjct: 284 ADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD----DPRFSAYGVLAPK-SKADF 338

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+ ++ LP +
Sbjct: 339 AFLLHGYYHLK----DTGVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDTVIGLPAN 391

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   K +  +  V  I+A+  +  I+ +   R    D     IL+ Y
Sbjct: 392 IFFNTSIPTTVIIL---KKDRAKKDVLFIDASQDFEKIKTQNTLR----DYHIDAILEAY 444

Query: 457 VSR 459
            +R
Sbjct: 445 KTR 447


>gi|238921301|ref|YP_002934816.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri
           93-146]
 gi|238870870|gb|ACR70581.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri
           93-146]
          Length = 812

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 49/345 (14%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATAL 190
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V   LA  +
Sbjct: 115 LTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            + PD      +P    T+YDPTCG+G  L    +              L   GQE++  
Sbjct: 175 GITPD------TP-QDATVYDPTCGSGSLLLKVSDETRRG---------LSIFGQEMDNA 218

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGK--RFHYCLSNPPFGKK- 304
           T A+    M++         + +  I QG+TLS     +  GK   F + ++NPPF  K 
Sbjct: 219 TSALARMNMILHN-------NATAKIWQGNTLSDPQWKVANGKLKTFDFAVANPPFSNKN 271

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W    D      K     RF  G+P   +G   FL+H+   L+      G+ A++L    
Sbjct: 272 WTSGLDL-----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGKGAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++       R+G + +
Sbjct: 323 LFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRKG-IFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
           I+A+        +G K R+ + D  R I+D++   R    +SRM+
Sbjct: 379 IDAS---RGFIKDGNKNRLRSRDIHR-IVDVFNHQRTLPGYSRMV 419


>gi|190606537|ref|YP_001974822.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus
           faecium]
 gi|190350307|emb|CAP62659.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus
           faecium]
          Length = 515

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 211/492 (42%), Gaps = 83/492 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL----- 69
           IWK A D+ G     DF + +L  TL  R       +     +  + +   N D+     
Sbjct: 14  IWKIANDVRGSVDGWDFKQYVLG-TLFYRFISENFSSYIEGGDDSVNYAELNDDVITNEI 72

Query: 70  -ESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE-----SYIASFSD------NAKAIFE 116
            E  +K  GY  Y +  +S ++   +TN   N +     S I S ++      + K +F 
Sbjct: 73  KEDAIKTKGYFIYPSQMFSRIAKTANTNESLNTDLAAIFSAIESSANGYPSELDIKGLFA 132

Query: 117 DFDFSSTIARL-----EKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGS 168
           DFD +S   RL     +K   L  + K   G+   E   + +   +  + YE LI  + +
Sbjct: 133 DFDTTSN--RLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQID--LFGDAYEFLISNYAA 188

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN--- 225
              +   +F TP+ V  L   L      A+ K++   I  +YDP  G+G  L  A     
Sbjct: 189 NAGKSGGEFFTPQSVSSLIAQL------AIHKQT--TINKIYDPAAGSGSLLLQAKKQFD 240

Query: 226 -HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            H+ + G +          GQE+   T+ +    M +  +  D        I  G+TL  
Sbjct: 241 AHIIEDGFY----------GQEINHTTYNLARMNMFLHNINYDKFH-----IALGNTLLD 285

Query: 285 DLF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
             +   K F   +SNPP+  KW   +D   +  E       RF P   L   S     F+
Sbjct: 286 PHYGEDKPFDAIVSNPPYSVKWIGSEDPTLINDE-------RFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E I++L  +LF+
Sbjct: 339 LHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIISLAPNLFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  K++    K Q I+A+ +      +     I+ D+   +I+ ++ S+
Sbjct: 392 GTSIAVNILVLSKHKSD---NKTQFIDASGI--EFYKKETNNNILTDEHIAKIMSMFDSK 446

Query: 460 EN-GKFSRMLDY 470
           E+    ++ +DY
Sbjct: 447 EDIDHVAKSIDY 458


>gi|312130090|ref|YP_003997430.1| type i restrictioN-modification system, m subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311906636|gb|ADQ17077.1| type I restriction-modification system, M subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 515

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 197/454 (43%), Gaps = 90/454 (19%)

Query: 15  IWKNAEDLWG-----DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           IWK A ++ G     DFKH   G +   F +       +E   +++   Y  F  S+I  
Sbjct: 14  IWKIANEVRGSVDGWDFKHFVLGTLFYRF-ISENFTDYIEAGDTSIN--YAKFKDSDIPE 70

Query: 70  E---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD------------NAKA 113
           E     +K  GY  Y  S+  ++     +   NL + +   F+D            + K 
Sbjct: 71  EVKVDAIKTKGYFIY-PSQLFVNVEAKADDNKNLNTDLKQIFTDIQNSANGYPSEHDIKG 129

Query: 114 IFEDFDFSSTIARL-----EK----AGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHLI 163
           +F+DFD +ST  RL     EK    + +L+ I + NF   E   +T  D +  + YE LI
Sbjct: 130 LFDDFDTTST--RLGNTVEEKNKRLSAVLHGIAELNFGSFE---ETKID-LFGDAYEFLI 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP++V  L T +      AL K++   +  +YDP  G+G  L  A
Sbjct: 184 HNYAANAGKSGGEFFTPQEVSRLLTRI------ALHKQTK--VNKMYDPAVGSGALLLQA 235

Query: 224 MN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H  + G            GQE+   T+ +    M +  +  D       NI  G
Sbjct: 236 KKLYDEHFVEEGFF----------GQEINHTTYNLARMNMFLHNVNYDKF-----NIALG 280

Query: 280 STLSKDLFTG-KRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           +TL+   F   K F   +SNPP+   W    D   +  E       RF P   L   S  
Sbjct: 281 NTLTDPHFLDDKPFDAIVSNPPYSVNWIGSDDPTLINDE-------RFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F+MH  + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 334 DFAFVMHALSYL----SGTGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            +LF+ T+IA  + +LS  K +    K Q I+A+
Sbjct: 387 PNLFYGTSIAVNILVLSKHKADT---KTQFIDAS 417


>gi|294616002|ref|ZP_06695828.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1636]
 gi|291591136|gb|EFF22819.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1636]
          Length = 530

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 43/312 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDP 212
           V+ + YE LI +F SE  + A +F TP  V  + A  + LD  +  F        +++DP
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERRF-------FSVFDP 225

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  + +  N++    +H   P  +  HGQEL   T+ +    +++  ++++     
Sbjct: 226 TMGSGSLMLNVRNYL----TH---PDNVKYHGQELNTTTYNLAKMNLILHGVDAE----- 273

Query: 273 SKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             N++ G TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK
Sbjct: 274 EMNLRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK 329

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A+
Sbjct: 330 -SKADFAFLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAV 381

Query: 391 VALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + +P +LFF T+I T + +L  NR+T +    V  I+A+  +   +N+ K    ++++  
Sbjct: 382 IGMPANLFFGTSIPTTVIVLKKNRQTRD----VLFIDASREFVKGKNQNK----LSEENI 433

Query: 450 RQILDIYVSREN 461
           ++IL+ Y  R++
Sbjct: 434 QKILETYAERKD 445


>gi|300741622|ref|ZP_07071643.1| type I restriction-modification system, M subunit [Rothia
           dentocariosa M567]
 gi|300380807|gb|EFJ77369.1| type I restriction-modification system, M subunit [Rothia
           dentocariosa M567]
          Length = 557

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 119/486 (24%), Positives = 193/486 (39%), Gaps = 68/486 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSAVREKYLA 61
           A L   IW+ A DL G     DF + +L     R +   L       E    A    Y  
Sbjct: 43  AELHRTIWRIANDLRGSVDGWDFKQYVLGMMFYRFISENLTEYITYEEQEAGAKGFDYAQ 102

Query: 62  FGGSNIDL---ESFVKVAGYSFYNTSEYS---LSTLGSTNTRNNLESYIASFSDNAK--- 112
                IDL   +  VK  G+  Y +  +           N    LE    +  ++ K   
Sbjct: 103 INDLEIDLDVVQEIVKERGFFLYPSQLFENVYAQARTDENLNETLEKVFQAVEESTKNTQ 162

Query: 113 ------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEH 161
                  +F+DFD +S     +  ++   LYK+    + + L        +    + YE+
Sbjct: 163 SERNFSGLFDDFDVNSKKLGSSVQDRNKTLYKLMGAVAEMNLETSYRQSANDTFGDAYEY 222

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + +   +   ++ TP++V  L   +  D            +  +YDP CG+G  L 
Sbjct: 223 LMGMYAANAGKSGGEYYTPQEVSELLARIATD--------GKTQVGRVYDPACGSGSLLL 274

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                 A       +   L   GQE  P T+ +C   ML+  +  D       +I  G T
Sbjct: 275 ----KFAKLLGAENVKEFL---GQESNPTTYNLCRINMLLHNIPFDKF-----DIAHGDT 322

Query: 282 LSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L        + F   +SNPP+  KWE D + +          R+ P   L   +   + F
Sbjct: 323 LIAPQHRHLEPFEAIVSNPPYSTKWEGDSNPLLINDD-----RYAPAGVLAPKAKADLAF 377

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            MH+ + L       G AAIV     L+ G A   E +IR +LL N+ ++A++ LP DLF
Sbjct: 378 TMHMLSSLA----EDGTAAIVEFPGVLYRGGA---ERKIREYLLRNNYVDAVIQLPPDLF 430

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L  +K   R   V  ++A+  +  +   G K R++ +  R +I     +
Sbjct: 431 FGTAIGTCIIVL--KKGTRRDTSVLFVDASAEFERV---GNKNRLL-ESHREKIYQAVRT 484

Query: 459 RENGKF 464
           REN ++
Sbjct: 485 RENVQY 490


>gi|226310298|ref|YP_002770192.1| type I restriction modification system DNA methylase [Brevibacillus
           brevis NBRC 100599]
 gi|226093246|dbj|BAH41688.1| type I restriction modification system DNA methylase [Brevibacillus
           brevis NBRC 100599]
          Length = 515

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 210/499 (42%), Gaps = 85/499 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L + IWK A D+ G     DF + +L     R         +E    +V+   L    
Sbjct: 8   AELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDESVKYAELPDDI 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNA------ 111
              ++ E  +K  GY  Y  S+   +   + NT  +L + +A+       S N       
Sbjct: 68  ITKEIKEDAIKTKGYFIY-PSQLFANIAKTANTNESLNTDLAAIFSAIESSANGYPSELD 126

Query: 112 -KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLI 163
              +F DFD +S   RL     +K+  L  + K   G+      D+  D +  + YE+LI
Sbjct: 127 INGLFADFDTTSN--RLGNTVKDKSSRLAAVIKGVEGLNFGDFEDSHID-LFGDAYEYLI 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   L +         +   I  +YDP  G+G  L  A
Sbjct: 184 SNYAANAGKSGGEFFTPQCVSKLIAQLAI--------HNQTTINKIYDPAAGSGSLLLQA 235

Query: 224 MN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ + G +          GQE+   T+ +    M +  +  D       NI  G
Sbjct: 236 KKQFDAHIIEDGFY----------GQEINHTTYNLARMNMFLHNINYDKF-----NIALG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           +TL    F  ++ F   +SNPP+   W    D   +  E       RF P   L   S  
Sbjct: 281 NTLLDPHFGDEKPFDAIVSNPPYSVNWIGSDDPTLINDE-------RFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 334 DFAFVLHTLSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVISLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQI 452
            +LF+ T+IA  + +LS  KT+    K Q I+A+  D +    N      I+ D+   +I
Sbjct: 387 PNLFYGTSIAVNILVLSKHKTD---NKTQFIDASGVDFYKKETN----NNILTDEHIERI 439

Query: 453 LDIYVSREN-GKFSRMLDY 470
           + I+ ++E+    ++ +DY
Sbjct: 440 MKIFNNKEDIDHVAKSVDY 458


>gi|325104014|ref|YP_004273668.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter
           saltans DSM 12145]
 gi|324972862|gb|ADY51846.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter
           saltans DSM 12145]
          Length = 519

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 37/273 (13%)

Query: 148 DTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           DT+ D    ++  +YE+ + +F     +G  +F TP+ +V+L  A +++P          
Sbjct: 143 DTLRDEAQDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNL-IAEMIEPYKG------- 194

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP+CG+GG    ++  +     + K   I   +GQEL   T  +    + IR +
Sbjct: 195 ---KIYDPSCGSGGMFVQSLKFIEKHQGNKKDISI---YGQELTNTTFKLAKMNLAIRGI 248

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
            ++         +   T + D     +  Y ++NPPF  K W  + +  +     G    
Sbjct: 249 SANLGN------KAADTFADDQHKELKADYIMANPPFNLKDWRAENELTDDTRWTG---- 298

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               +P  S+ +  +++++ +KL    +  G A  +L++  L     G  E +IR+ ++E
Sbjct: 299 --YEVPPKSNANYAWILNMISKL----SQNGVAGFILANGAL---SGGGEEYKIRKQIIE 349

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           NDL+EAIV LP  +F+ T+I+  LWIL+  KTE
Sbjct: 350 NDLVEAIVILPRAMFYSTDISVTLWILNRNKTE 382


>gi|304560217|gb|ADM42881.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Edwardsiella tarda FL6-60]
          Length = 812

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 157/345 (45%), Gaps = 49/345 (14%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATAL 190
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V   LA  +
Sbjct: 115 LTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            + PD      +P    T+YDPTCG+G  L    +              L   GQE++  
Sbjct: 175 GITPD------TP-QDATVYDPTCGSGSLLLKVSDETRRG---------LSIFGQEMDNA 218

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK- 304
           T A+    M++         + +  I QG+TLS   +       K F + ++NPPF  K 
Sbjct: 219 TSALARMNMILHN-------NATAKIWQGNTLSDPQWKEADGRLKAFDFAVANPPFSNKN 271

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W    D      K     RF  G+P   +G   FL+H+   L+      G+ A++L    
Sbjct: 272 WTSGLDL-----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGKGAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++       R+G + +
Sbjct: 323 LFRGNA---EANIRENLVKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRKG-IFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
           I+A+        +G K R+ + D  R I+D++   R    +SRM+
Sbjct: 379 IDAS---RGFIKDGNKNRLRSRDIHR-IVDVFNHQRTLPGYSRMV 419


>gi|269140412|ref|YP_003297113.1| type I restriction-modification system, M subunit [Edwardsiella
           tarda EIB202]
 gi|267986073|gb|ACY85902.1| type I restriction-modification system, M subunit [Edwardsiella
           tarda EIB202]
          Length = 812

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 157/345 (45%), Gaps = 49/345 (14%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATAL 190
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V   LA  +
Sbjct: 115 LTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVI 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            + PD      +P    T+YDPTCG+G  L    +              L   GQE++  
Sbjct: 175 GITPD------TP-QDATVYDPTCGSGSLLLKVSDETRRG---------LSIFGQEMDNA 218

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK- 304
           T A+    M++         + +  I QG+TLS   +       K F + ++NPPF  K 
Sbjct: 219 TSALARMNMILHN-------NATAKICQGNTLSDPQWKEADGRLKAFDFAVANPPFSNKN 271

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W    D      K     RF  G+P   +G   FL+H+   L+      G+ A++L    
Sbjct: 272 WTSGLDL-----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGKGAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++       R+G + +
Sbjct: 323 LFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRKG-IFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
           I+A+        +G K R+ + D  R I+D++   R    +SRM+
Sbjct: 379 IDAS---RGFIKDGNKNRLRSRDIHR-IVDVFNHQRTLPGYSRMV 419


>gi|158522935|ref|YP_001530805.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511761|gb|ABW68728.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 680

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 138/329 (41%), Gaps = 79/329 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEG--AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           ++ + YE+LI+RF  E   G  A  F TP++VV +    L           P    TLYD
Sbjct: 161 ILGDAYEYLIKRFADENRNGTTAGQFYTPQEVVDIIVRYL----------KPQKGSTLYD 210

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+GGFL +A  ++       K   +    GQE    T A+    M++  L++     
Sbjct: 211 PTCGSGGFLINAAKYIKKTTGTQKNIRLF---GQEDVWNTWAIANINMILHGLDA----- 262

Query: 272 LSKNIQQGSTLSKDLFTG-------KRFHYCLSNPPFGKK-WEKD--------------K 309
               I++G TL    FT        K F   ++N PF ++ W K+              K
Sbjct: 263 ---AIKKGDTLKDPKFTEEDNDLTIKTFDLVMANFPFSQENWWKNGEPKRDKKGKPITNK 319

Query: 310 DAVE------KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           D         KE  N    RF  G+P  S+G   FL H+   +    N  G+A +V    
Sbjct: 320 DGSPQLNYPGKEDFNDPYERFDYGIPPFSNGDFAFLQHIVASM----NESGKAGVVCPQG 375

Query: 364 PLFNGRAGSGESE------------IRRWLLEN------------DLIEAIVALPTDLFF 399
            LF G+    E E            IRR  L+             ++I+AIV LP +LF+
Sbjct: 376 VLFRGQPQKTEEEDGQNRKADDEYLIRRGFLQGPVNKDGEFVHAINIIDAIVVLPGNLFY 435

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINAT 428
            T I   + + +  K EER+ KV ++ A 
Sbjct: 436 GTTIPGSILLFNKNKPEERKNKVLMVYAA 464


>gi|300727765|ref|ZP_07061149.1| type I restriction-modification system methyltransferase subunit
           [Prevotella bryantii B14]
 gi|299774975|gb|EFI71583.1| type I restriction-modification system methyltransferase subunit
           [Prevotella bryantii B14]
          Length = 513

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 43/386 (11%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           ++  + ++FS   L   + P   M   YE+L+ +F  +    A++F T R VV L   +L
Sbjct: 150 IITSLIEDFSRYNLGLSSCPADEMGQAYEYLVGKFADDAGNTAQEFYTNRTVVTLMAEIL 209

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDPTCG+GG L   ++ +   G   +   +    GQE+   T
Sbjct: 210 ----------QPQPNESIYDPTCGSGGMLVKCLDFLRQKGLPWQGVKVF---GQEINALT 256

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEK 307
            ++    + +  +E     D S  I +  TL+   F      ++F   L+NPP+    E 
Sbjct: 257 ASIARMNLYLNGVE-----DFS--IVREDTLAHPAFVDGSHLRKFDIVLANPPYSIS-EW 308

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           ++ A E +    + GR   G P        F+ H+   +    N  GR AI+L    LF 
Sbjct: 309 NRSAFEHD----KWGRNMWGTPPQGRADYAFIQHIVASMN---NDHGRCAILLPHGILFR 361

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
                 ESE+R+ L+ +D IEA++ L  +LF+   +   + I +NRK +E + KV  INA
Sbjct: 362 NE----ESEVRKGLVLSDKIEAVIGLGPNLFYNAPMEACILICNNRKAKELKNKVIFINA 417

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR--IKVLRPL 484
               T    E      + +   ++I + Y S  +   F R++D+      R  + + + +
Sbjct: 418 KYEVTRKNAES----FLENSHIKKIAEAYKSVNDIADFKRLVDFEEIEKNRFDLSIQKYV 473

Query: 485 RMSFILDKTGLARLEADITWRKLSPL 510
            +S I     ++  +A  +W +   L
Sbjct: 474 YISEINKAEAVSAEDALASWERQHSL 499


>gi|329123773|ref|ZP_08252331.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|327469260|gb|EGF14731.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 514

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 201/492 (40%), Gaps = 76/492 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R         +E    +V 
Sbjct: 1   MTIAMQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLES-FVKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA- 111
              L       D+++  +K  GY  Y +  +    +  GS  N   +L+       ++A 
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 112 --------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPD 152
                   K +F DFD +S   RL     +K   L  + K  + ++       H D   D
Sbjct: 121 GFPSEQDIKGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGD 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                 YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP
Sbjct: 179 A-----YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDP 225

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  L  A        + H I       GQE+   T+ +    M +  +  D     
Sbjct: 226 AAGSGSLLLQAKKQF----NEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF--- 276

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G+TL +  F   K F   +SNPP+  KW    D      +     RF P   L 
Sbjct: 277 --DIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLA 329

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E 
Sbjct: 330 PKSKADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVET 382

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++AL  +LFF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++  
Sbjct: 383 VIALAPNLFFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHI 435

Query: 450 RQILDIYVSREN 461
            QIL ++  +E+
Sbjct: 436 EQILKLFADKED 447


>gi|253687262|ref|YP_003016452.1| type I restriction-modification system, M subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753840|gb|ACT11916.1| type I restriction-modification system, M subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 814

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 165/361 (45%), Gaps = 48/361 (13%)

Query: 117 DFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
           DFD    + +  E    L K+   F G++L  +    D ++ + YE+L+R F +E  +  
Sbjct: 98  DFDDEDKLGKGKEMIDRLSKLVGIFEGLDLSGNRAEGDDLLGDAYEYLMRHFATESGKSK 157

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  +   ++      +  E+P    T+YDPTCG+G  L   +N  A  G   
Sbjct: 158 GQFYTPAEVSRILAKVI-----GITPETP-QDATVYDPTCGSGSLLL-KVNDEARRG--- 207

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
                L  +GQE++  T A+    M++         + +  I +G+TLS   +       
Sbjct: 208 -----LSIYGQEMDNATSALARMNMILHN-------NTTAKIWKGNTLSDPQWKEANGRL 255

Query: 290 KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           K F + ++NPPF  K W    +      K     RF  G P   +G   FL+H+   L+ 
Sbjct: 256 KAFDFAVANPPFSNKNWTSGLNP-----KKDPFERFVWGTPPEKNGDYTFLLHIIKSLK- 309

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + 
Sbjct: 310 ---STGKGAVILPHGVLFRGNA---EATIRENLIKQGYIKGIIGLPANLFYGTGIPACII 363

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRM 467
           ++       R+G + +I+A+        +G K R+ + D  R I+D++   R    +SRM
Sbjct: 364 VIDKEHAHSRKG-IFMIDAS---RGFIKDGNKNRLRSRDIHR-IVDVFNHQRTVPGYSRM 418

Query: 468 L 468
           +
Sbjct: 419 V 419


>gi|257880781|ref|ZP_05660434.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,230,933]
 gi|257891263|ref|ZP_05670916.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,231,410]
 gi|257815009|gb|EEV43767.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,230,933]
 gi|257827623|gb|EEV54249.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,231,410]
          Length = 540

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 164/363 (45%), Gaps = 48/363 (13%)

Query: 104 IASFSDNAKAIFEDFDF-----SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           I   S+N + +FED D       ST  +  K   +  + K   G+ +        V+ + 
Sbjct: 126 IEQSSENFENLFEDIDLYSKKLGSTPQKQNKT--IADVMKELEGLNMAGHA--GDVLGDA 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F SE  + A +F TP+ V  L T ++L   +    +  G   ++YD T G+G 
Sbjct: 182 YEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKE----DKKGF--SVYDATMGSGS 235

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +     SH   P  +   GQEL   T+ +    M++  +        ++++  
Sbjct: 236 LLLNAKKY-----SHQ--PGTISYFGQELNTSTYNLARMNMILHGVPI-----ANQHLHN 283

Query: 279 GSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW  DK  ++    +     +G   PK S    
Sbjct: 284 ADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD----DPRFSAYGVLAPK-SKADF 338

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+ ++ LP +
Sbjct: 339 AFLLHGYYHLK----DTGVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDTVIGLPAN 391

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   K +  +  V  I+A+  +  I+ +   R    D     IL+ Y
Sbjct: 392 IFFNTSIPTTVIIL---KKDRAKKDVLFIDASQDFEKIKTQNTLR----DYHIDAILEAY 444

Query: 457 VSR 459
            +R
Sbjct: 445 KTR 447


>gi|253756219|ref|YP_003029359.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
 gi|251818683|emb|CAZ56518.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
          Length = 529

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 212/498 (42%), Gaps = 90/498 (18%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPTRSAVREK 58
           ++ N IW  A +L G+   +++   IL F   R L           E         V++ 
Sbjct: 7   AITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPGETVQDA 66

Query: 59  YL--AFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDNA- 111
           Y   A G   ++ LE+     GY+      ++       N+    ++ ++    F+ N  
Sbjct: 67  YAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDHFNANVE 126

Query: 112 ---------KAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    + +F D +       +ST+AR   A  L  I K    IE   D   D ++ 
Sbjct: 127 LNRDAMEDFRGVFNDINLGDSRLGNSTVAR---AKSLNSIVKLIDSIEYKNDEGKD-ILG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPT 213
            IYE+LI +F +   +   +F TP  V  +   ++   L+  D  F        ++YDPT
Sbjct: 183 EIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLEKSDTSF--------SVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +   G H K       +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-GQHIKF------YGQEMNTTTYNLARMNLMMHQVGYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + ++A++ LP +LF+ T I T + +   NR+T++    V  I+A+  +     +GK +  
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNRQTKD----VFFIDASKEF----EKGKNQNH 442

Query: 444 INDDQRRQILDIYVSREN 461
           ++DD   +I++ Y +R++
Sbjct: 443 LSDDMVEKIVETYHNRQS 460


>gi|199581425|gb|ACH89414.1| FclIM [Flavobacterium columnare]
          Length = 814

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 153/330 (46%), Gaps = 49/330 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLY 210
           D ++ + YE+L+R F ++  +    F TP +V   LA  + + P      ++     T Y
Sbjct: 135 DDLLGDAYEYLMRHFATDSGKSKGQFYTPSEVSKVLAKVIGITP------QNSNAQTTAY 188

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L      VA+          +  +GQE E  T  +    M+   L  +P  
Sbjct: 189 DPTCGSGSLLL----KVAEAAEK-----TIDLYGQEKEFATANLAKMNMI---LHGNP-- 234

Query: 271 DLSKNIQQGSTLSKDLFTG-------KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELG 322
             S  I    TLS   F         K F Y +SNPPF  K W           KN    
Sbjct: 235 --SAEIIADDTLSHPYFKSDNDDDNLKSFDYIVSNPPFSLKSWSNGVSI-----KNDPYK 287

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           RF  G+P   +G   FL+H+   ++      G+AAIVL    LF G A   E+EIR+ ++
Sbjct: 288 RFELGVPPEKNGDYAFLLHIIKSMK----STGKAAIVLPHGVLFRGNA---EAEIRKEII 340

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   I+ I+ LP +LF+ T I   + +L +++    R  + +++A+  +T    +G K R
Sbjct: 341 KKGFIKGIIGLPANLFYGTGIPACIIVL-DKENAHNRSHIFMMDASKGFTK---DGNKNR 396

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYR 471
            + +    +I+D++ +  E  K+SR ++ +
Sbjct: 397 -LQEKNIHKIVDVFNNELEVPKYSRKVEIK 425


>gi|257438277|ref|ZP_05614032.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
 gi|257199239|gb|EEU97523.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
          Length = 501

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 147/333 (44%), Gaps = 44/333 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ +  F  +  +   +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTLVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   V +   H      +  +GQ+  P T 
Sbjct: 190 ---------QPFKGR-VYDPCCGSGGMFVQSAKFVEN---HSGNINDISIYGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDK 309
            +    + IR +E D    L K      T   D     R  Y ++NPPF    W  E+ K
Sbjct: 237 KLAQMNLAIRGIEPD----LGK--YAADTFLDDQHPTMRADYIMANPPFNLSNWGAEQLK 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G+P  S+ +  +L H+     L P  GGR  +VL++  L    
Sbjct: 291 DDV----------RWQYGMPPASNANFAWLQHMI--YHLAP--GGRMGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S RK  ++ GK   I+A  
Sbjct: 335 QSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKRK--KQAGKTLFIDARK 392

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +   +    +K R + D+  ++I D Y +  NG
Sbjct: 393 MGDMV---SRKLRELTDEDIKKIADTYNAYVNG 422


>gi|52082597|ref|YP_081388.1| putative Type I restriction-modification system M subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52787994|ref|YP_093823.1| hypothetical protein BLi04318 [Bacillus licheniformis ATCC 14580]
 gi|52005808|gb|AAU25750.1| putative Type I restriction-modification system M subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52350496|gb|AAU43130.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 509

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 161/370 (43%), Gaps = 63/370 (17%)

Query: 112 KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFG 167
           + +F + DF+S        E+  +L  + ++F+ + L P  V  + V+ + Y+++I RF 
Sbjct: 114 RGVFRNIDFNSEAILGKAKERNAMLRSLLEDFNKLTLKPSVVGSEDVIGDAYQYMIERFA 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  +   +F TP     L   L+           P     +YDPTCG+G  L    N V
Sbjct: 174 SDAGKKGGEFYTPSMASELLARLV----------KPQENDRVYDPTCGSGSLLIRVANQV 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +          +  +GQE    TH++ +  M +  ++          I+ G TL+  L 
Sbjct: 224 PN--------KKVAIYGQERNGATHSLALMNMYLHGIDD-------AKIEWGDTLANPLH 268

Query: 288 --TGK--RFHYCLSNPPFG-KKW------EKDKDAVEK-EHKNGELGRFGPGLPKISDGS 335
              GK  +F   ++NPPF   KW      E   D+  K E       RF  G+P  S G 
Sbjct: 269 LEDGKLMKFQAIVANPPFSLDKWAMGFAGEGTNDSKFKMEASLDPHRRFEWGVPPSSKGD 328

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+ H+   L       GR A +L    LF G   + E +IR+ ++E +L++A++ LP 
Sbjct: 329 YAFVQHMLYSLA----ENGRMATILPHGVLFRG---ASEGKIRQQIIEMNLLDAVIGLPE 381

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---- 451
            LF+ T I   + +    +T   R  V  I+A+        EG   +  N +Q R+    
Sbjct: 382 GLFYGTGIPACILVFKKNRT---RKDVLFIDAS-------AEGNYEKGKNQNQLREQDIA 431

Query: 452 -ILDIYVSRE 460
            I+D Y  RE
Sbjct: 432 KIVDTYEKRE 441


>gi|55820777|ref|YP_139219.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMG 18311]
 gi|55736762|gb|AAV60404.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMG 18311]
          Length = 534

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 207/498 (41%), Gaps = 65/498 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---------ECALEPT 51
           M+E T ++ SL   +W +A+ L       D+   +L     + L         E   E T
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 52  RS-----AVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            S     AV  KY     ++ DL + +     Y+ +    ++       +    LE    
Sbjct: 61  ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKA------IFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++      +FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +      A          TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDKQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +        + P  +V  GQEL   T+ +    M++  +  +     ++ +
Sbjct: 233 GSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE-----NQFL 280

Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG   PK S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGKLAPK-SKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +IL+
Sbjct: 390 ANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYR 471
            Y SRE+  KF+ +  + 
Sbjct: 443 AYKSREDIDKFAHLASFE 460


>gi|298253897|ref|ZP_06977484.1| type I restriction-modification system, methyltransferase subunit
           [Gardnerella vaginalis 5-1]
 gi|297532040|gb|EFH71015.1| type I restriction-modification system, methyltransferase subunit
           [Gardnerella vaginalis 5-1]
          Length = 535

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 151/312 (48%), Gaps = 49/312 (15%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ ++ F    ++   +F TP DVV L  A++ +P +           TLYDP CG+G
Sbjct: 172 VYEYFLKEFAVNATKEEGEFYTPHDVVKLIAAMI-EPFEG----------TLYDPACGSG 220

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
           G    +   V     +     I   +GQE E  T+ +    + +R         +S N+ 
Sbjct: 221 GMFIQSAELVKSKQGNLNSINI---YGQEKEAATYRLAKMNLALR--------GISHNLG 269

Query: 277 -QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDG 334
               S+ + DL  G  F+Y ++NPPF  K   D++      KN    R+   G P  S+ 
Sbjct: 270 GTNDSSFTHDLHKGLYFNYIMANPPFNLKGWYDENL-----KNDP--RWADYGTPPESNA 322

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +++H+ + L+ P NG   A  +L++  L +    S   EIR+ L++ND +EAI+ LP
Sbjct: 323 NYAWILHILSHLK-PSNG--VAGFLLANGALND----SDTLEIRKRLIQNDKVEAIIVLP 375

Query: 395 TDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDL--WT--SIRNEGKKRRII 444
            +LF  T+I+  LWIL+  K   +      R +   I   DL  WT  +++ E KK+  +
Sbjct: 376 RELFITTDISVTLWILNQNKNGGKYHDRNLRNRDHEILFMDLRTWTEHAVKGENKKKVRL 435

Query: 445 NDDQRRQILDIY 456
           + +Q +   DIY
Sbjct: 436 SAEQIQHAADIY 447


>gi|269967979|ref|ZP_06182018.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827415|gb|EEZ81710.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 919

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 215/494 (43%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---ECALEPTRSAVREKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   + +    +   ++   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALSEDDT 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +   +++      +A  + ++T   S +    +N R+ L ++    +   K +FE   F+
Sbjct: 66  ETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEGI-FT 124

Query: 122 STIARLEKAGLLY-KICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSEGA 174
           +    L K G    K  K  S +      +P        V+  IYE+LI +F +   + A
Sbjct: 125 TLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGYDVLGYIYEYLIEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLA---TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            +F TP +V  L    TA  L   D +          +YDPT G+G  L +  + VA   
Sbjct: 185 GEFYTPHEVSLLMSEITAHELKHKDEI---------EIYDPTSGSGSLLINIGSSVA--- 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----- 286
            + K    +  + QEL+  T+ +    +++R +  D     +   + G TL  D      
Sbjct: 233 KYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPD-----NITTRNGDTLEDDWPYFDE 287

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                 +        +SNPP+ +KW+      E +  +    RFG   PK +     FL+
Sbjct: 288 SNPQESYQPLYVDAVVSNPPYSQKWDP-----ENKENDPRYARFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G     IVL    LF G     E EIR+ L+EN+ I+AI+ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMTIVLPHGVLFRG---GEEGEIRKQLIENNHIDAIIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +L  ++       V +I+A+  +     EGK  ++ + D +R I D  + R+
Sbjct: 394 TSIPTVILVLKQKR---ENNDVLIIDASKHFVK---EGKNNKLQDSDIKR-ITDAVIHRQ 446

Query: 461 -NGKFSRMLDYRTF 473
            N KFS+++  +T 
Sbjct: 447 DNDKFSKVVSKKTI 460


>gi|228478347|ref|ZP_04062955.1| type I restriction-modification system, M subunit [Streptococcus
           salivarius SK126]
 gi|228250026|gb|EEK09296.1| type I restriction-modification system, M subunit [Streptococcus
           salivarius SK126]
          Length = 534

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          TLYD T
Sbjct: 176 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDKQGFTLYDAT 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 230 MGSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE-----N 277

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      ++    +     FG   PK 
Sbjct: 278 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGKLAPK- 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 333 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 439

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE+  KF+ +  + 
Sbjct: 440 ILNAYKSREDMDKFAHLASFE 460


>gi|113866035|ref|YP_724524.1| Type I restriction-modification system methylation subunit
           [Ralstonia eutropha H16]
 gi|113524811|emb|CAJ91156.1| Type I restriction-modification system methylation subunit
           [Ralstonia eutropha H16]
          Length = 835

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 185/452 (40%), Gaps = 64/452 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    ++F + I     L+R     +  R  V  + +  G S  + 
Sbjct: 7   QLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVIAERMNAGESRANA 66

Query: 70  ESFVKVAGYSFYNTSEYS----------LSTLGSTNTRNNLESYIASF-SDNAKA--IFE 116
           E   ++    +Y  +EY           L      N  ++L   ++   + N K   + E
Sbjct: 67  EKSAELE--RWYKGAEYFWVPPRSRYKFLLDEAHQNVGDSLNKALSGIETANTKLYDVLE 124

Query: 117 DFDFSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEG 173
             DF+  + + +   + L ++  +F    L  +    PD ++   YE+LI  F     + 
Sbjct: 125 HIDFTRKVGQSKIPDIKLRQLITHFGIYRLRNEDFEFPD-LLGAAYEYLIGEFADSAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   L+           P +   +YDP CG+GG L  A  ++ + G  
Sbjct: 184 GGEFYTPRSVVRMMVRLI----------QPTLAHDIYDPCCGSGGMLIAAKEYIDEHGED 233

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKR 291
            +   +    GQE      ++    ML+  + +        N+Q   TL+  + +  G+ 
Sbjct: 234 GRKANLF---GQEFNGTVWSIAKMNMLLHGIST-------ANLQNEDTLAEPQHVEGGEL 283

Query: 292 FHY--CLSNPPFGKKW---EKDKDAVEK-EHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            H+   L+NPPF   W   EK+ D       K  E  R+G          ++FL H+   
Sbjct: 284 MHFDRVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGAKKADLMFLQHML-- 341

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                  GG  A V+    LF G     E  IR  ++E+DL+EA++ +  +LF+ T I  
Sbjct: 342 --AVTRDGGMVATVMPHGVLFRG---GEEKAIRAGIVEDDLLEAVLGVAPNLFYGTGIPA 396

Query: 406 YLWILSNR----------KTEERRGKVQLINA 427
            + +L  R          K  ERRGKV  INA
Sbjct: 397 CILVLRQRVQNGANRVSGKPAERRGKVLFINA 428


>gi|291562471|emb|CBL41287.1| type I restriction system adenine methylase (hsdM)
           [butyrate-producing bacterium SS3/4]
          Length = 523

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 158/367 (43%), Gaps = 46/367 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRFGS 168
            +F+D+D +S       A    K+ K  +G+ E+    V D       + YE+L+  + S
Sbjct: 136 GLFDDYDVNSNKLGSTVAKRNEKLVKLLNGVGEMKLGDVKDHSIDAFGDAYEYLMMMYAS 195

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP DV  L T L               I  +YDP CG+G  L  A   + 
Sbjct: 196 NAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGSGSLLLKAEKVLG 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLF 287
                +        +GQE+   T+ +C   M +  +  D       NI    TL S   +
Sbjct: 248 KDAIRNGF------YGQEINITTYNLCRINMFLHDVGFDKF-----NIACEDTLISPQHW 296

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANK 345
             + F   +SNPP+  KW  D++ +          RF P   L   S   M F+MH  + 
Sbjct: 297 DDEPFELIVSNPPYSIKWAGDENPLLINDP-----RFAPAGVLAPKSKADMAFIMHSLSW 351

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ LP++LFF T+IAT
Sbjct: 352 LA----SNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCIIQLPSNLFFGTSIAT 404

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + ++   K +    K   I+AT+    + N  K    +  +    I+D +  RE  K F
Sbjct: 405 CIMVMKKNKAD---NKTLFIDATNECVKVTNNNK----LTPEHIEHIVDAFTKREEVKHF 457

Query: 465 SRMLDYR 471
           + +  Y 
Sbjct: 458 AHLASYE 464


>gi|116627584|ref|YP_820203.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMD-9]
 gi|116100861|gb|ABJ66007.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMD-9]
          Length = 534

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          TLYD T
Sbjct: 176 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDKQGFTLYDAT 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 230 MGSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE-----N 277

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      ++    +     FG   PK 
Sbjct: 278 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGKLAPK- 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 333 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 439

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE+  KF+ +  + 
Sbjct: 440 ILNAYKSREDMDKFAHLASFE 460


>gi|303241302|ref|ZP_07327807.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302591141|gb|EFL60884.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 802

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 156/327 (47%), Gaps = 45/327 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F +P +V  + + ++      +   +     T+YD
Sbjct: 135 DDILGDAYEYLMRHFATESGKSKGQFYSPAEVSRVISKII-----GINTSNVNAQTTVYD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L    +              +  +GQE +  T  +    M    L  +P  +
Sbjct: 190 PTCGSGSLLLKVSDEAG---------IKISLYGQEKDSATTGLARMNMY---LHDNPLHE 237

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
               I+QG+TL+  +F       K F Y ++NPPF  K+W    +  + E++     RF 
Sbjct: 238 ----IKQGNTLANPMFKDENGKLKTFDYVVANPPFSDKRWGNGVNTEKDEYE-----RFK 288

Query: 326 P-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+P   +G   +L+H+   L+   +  G+ A +L    LF G A   E+EIR+ ++  
Sbjct: 289 DYGVPPSKNGDFAYLLHIIRSLK---SSKGKGACILPHGVLFRGNA---EAEIRKNIIRK 342

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP +LF+ T I   + +L       R+G + +I+A+        +G K R+ 
Sbjct: 343 GYIKGIIGLPANLFYGTGIPACIIVLDKENAANRKG-IFMIDAS---KGFMKDGNKNRLR 398

Query: 445 NDDQRRQILDIYVSR-ENGKFSRMLDY 470
           + D  + I+D++ ++ E  K+S+M+ +
Sbjct: 399 SMDIHK-IVDVFNNQYEIDKYSKMVTF 424


>gi|295105616|emb|CBL03160.1| type I restriction system adenine methylase (hsdM)
           [Faecalibacterium prausnitzii SL3/3]
          Length = 520

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 204/487 (41%), Gaps = 71/487 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI---DL-- 69
           IW  A+DL G     DF   +L     R +    E   S + +  +  G  +    D+  
Sbjct: 17  IWAIADDLRGAVDGWDFKSYVLGTMFYRYIS---ENIASYINQGEIDAGNPDFRYEDMSD 73

Query: 70  -------ESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKA------ 113
                  E  V+  G+    +  +      + N  N    LE+      ++AK       
Sbjct: 74  AEAEQAREGLVQEKGFFILPSELFCNVRAKAANDENLNETLETVFRHIEESAKGSSSEGQ 133

Query: 114 ---IFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRF 166
              +F+D+D +S       A    K+ K  +G+ +++   V +       + YE+L+  +
Sbjct: 134 FAGLFDDYDVNSNKLGATVAKRNEKLVKLLNGVADMNLGDVKEHDIDAFGDAYEYLMTMY 193

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   +   +F TP DV  L T L       + K+    I  +YDP CG+G  L  A   
Sbjct: 194 ASNAGKSGGEFFTPADVSELLTRL-----GTVGKKE---INKVYDPACGSGSLLLKAEKV 245

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +      +         GQE+   T+ +C   M +  +E D + D++    + +  +   
Sbjct: 246 LGRDAVRNGF------FGQEINITTYNLCRINMFLHDIEFD-KFDIA---CEDTLTNPQH 295

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLAN 344
           +  + F   +SNPP+  KW  D++ +          RF P   L   S   + F+MH   
Sbjct: 296 WDDEPFELIVSNPPYSIKWAGDENPLLINDP-----RFAPAGVLAPKSKADLAFIMHSLA 350

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP++LFF T+IA
Sbjct: 351 WLA----SNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFIDCIIQLPSNLFFGTSIA 403

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
           T + +L   KT+    KV  I+A+     + N  K    +  +   +I+D +  R E   
Sbjct: 404 TCIMVLKKGKTD---NKVLFIDASSECVKVTNNNK----LTPENINKIVDTFAQRTEEAH 456

Query: 464 FSRMLDY 470
           FS + +Y
Sbjct: 457 FSHLAEY 463


>gi|258513150|ref|YP_003189406.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635053|dbj|BAI01027.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638108|dbj|BAI04075.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641162|dbj|BAI07122.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644217|dbj|BAI10170.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647272|dbj|BAI13218.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650325|dbj|BAI16264.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653316|dbj|BAI19248.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656369|dbj|BAI22294.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 508

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 169/370 (45%), Gaps = 46/370 (12%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFS--GIELHPDTVPD-R 153
           E+      D  K++F+D  F+S   RL    +K  +L  + ++F+   + L P  V +  
Sbjct: 107 EANGTKLKDAGKSVFQDISFNSD--RLGDEKQKNTVLRHLLEDFAKPDLNLRPSRVGNLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE LI+ F +   + A +F TP +V  L   +L          SP    ++ DP 
Sbjct: 165 VIGNGYEFLIKNFAASGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+   L      V     +H        +GQE    T +     M +   E + R +  
Sbjct: 215 CGSASLLMKCGKQVT---QNHNGSKDYALYGQEAIGSTWSFAKMNMFLHG-EDNHRIEWG 270

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+    L  D     RF    +NPPF   KW  + DA E  H      RF  G+P  +
Sbjct: 271 DTIRSPKLLD-DKNHLMRFDVVTANPPFSLDKWGHE-DAAEDVHH-----RFARGVPPKT 323

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G   F++H+ + L+   +  GR  +V+    LF G   S E  IR+ L+E +L++A++ 
Sbjct: 324 KGDYAFILHMISTLK---DRTGRMGVVVPHGVLFRG---SSEGRIRQKLIEENLLDAVIG 377

Query: 393 LPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  LFF T I   + I   +RKT++    V  I+A+  + +    GK + ++ ++   +
Sbjct: 378 LPEKLFFGTGIPAAILIFRKDRKTKD----VLFIDASREFKA----GKNQNVLTEENITK 429

Query: 452 ILDIYVSREN 461
           I++ Y +R++
Sbjct: 430 IVNTYRTRKD 439


>gi|317014260|gb|ADU81696.1| type I restriction enzyme M protein [Helicobacter pylori
           Gambia94/24]
          Length = 551

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 204/484 (42%), Gaps = 79/484 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPT---RSAVR 56
           L N IWK A +L G     DF + +L     R +           E  L+P     S   
Sbjct: 45  LHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKLDPNFDYASLSD 104

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------DN 110
           E+      S I+ + F       F N  + +        T  N+ + I   S      +N
Sbjct: 105 EEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQNIFTEIEKSSLGTPSEEN 164

Query: 111 AKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
            K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE+L
Sbjct: 165 VKGLFADLDVNSNKLGSSHQNRVEK---LTKILQAIGGMQLGDYQQSGID-VFGDAYEYL 220

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   ++ TP++V  L   + L   ++        I  +YDP CG+G  L  
Sbjct: 221 MAMYASNAGKSGGEYFTPQEVSELLAKITLHNQES--------INKVYDPCCGSGSLLLQ 272

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGST 281
               + D              GQE+   T+ +C   M +  +      + SK +I  G T
Sbjct: 273 FSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIALGDT 320

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAV----EKEHKNGELGRFGPGLPKISDGSM 336
           L          F   +SNPP+  KW  D + +    E+ +K G L       PK +   +
Sbjct: 321 LLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMNDERFNKAGALA------PK-NAADL 373

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G AAIV     L+ G A   E +IR +L++ + I+ ++ALP +
Sbjct: 374 AFTMHMLSYL----SNQGAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIALPEN 426

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF TNIAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y
Sbjct: 427 LFFGTNIATCILVLKKNKKDDT---TLFIDASKEFVK---EGKKNK-LKERNREKILQTY 479

Query: 457 VSRE 460
           + R+
Sbjct: 480 IERK 483


>gi|307704331|ref|ZP_07641248.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK597]
 gi|307622091|gb|EFO01111.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK597]
          Length = 533

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A       +  T+YD T
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTRI------AFLGREDQLGFTIYDAT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      +     +     FG   P+ 
Sbjct: 277 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFM----ADPRFSPFGKLAPQ- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 438

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE   KF+ +  Y 
Sbjct: 439 ILEAYKSREEIDKFAHLASYE 459


>gi|87300611|ref|ZP_01083453.1| type I restriction system adenine methylase [Synechococcus sp. WH
           5701]
 gi|87284482|gb|EAQ76434.1| type I restriction system adenine methylase [Synechococcus sp. WH
           5701]
          Length = 603

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 184/444 (41%), Gaps = 68/444 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A+ L  +    ++  V+L    L+ +  + E  R+ +      + G+N +     K
Sbjct: 97  LWLTADKLRNNMDAAEYKHVVLGLIFLKYISDSFEEHRAKLLAGEGDYEGANPEDPDEYK 156

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE----------DFDFSSTI 124
            A   F+  +E   S L +    N  +S I    D+A    E            D++   
Sbjct: 157 -AENVFWVPAEARWSHLQA----NAKQSTIGKLVDDAMVAIERDNPRLKGVLPKDYARPA 211

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++ G L  +    + IEL   +  ++      ++  +YE+ + RF S   +    F 
Sbjct: 212 LDKQRLGELIDV---IATIELTAASEGEQTHRSVDLLGRVYEYFLTRFASAEGKNGGQFY 268

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  VV     +L           P   R +YDP CG+GG    +   V   G   K+  
Sbjct: 269 TPSCVVRCLVEML----------EPYKGR-IYDPCCGSGGMFVQSEKFVESHGG--KLGD 315

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I + +GQE    T  + V  + +R +E+D         +   +  +DL    R  Y L+N
Sbjct: 316 ISI-YGQESNATTRRLAVMNLALRGIEAD------FGPEHADSFRRDLHPDLRADYVLAN 368

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF    W +  D V          R+  G+P   + +  ++ H  +   L P G   A 
Sbjct: 369 PPFNDSDWFRKDDDV----------RWQFGVPPKGNANFAWVQHFIH--HLAPQG--MAG 414

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-- 415
            VL++  + + +  SGE EIR+ L+E DL++ +VALP  LF+ T I   LW L+  K   
Sbjct: 415 FVLANGSMSSNQ--SGEGEIRKALIEADLVDCMVALPGQLFYSTQIPVCLWFLAKSKAAD 472

Query: 416 -----EERRGKVQLINATDLWTSI 434
                 +RRG    I+A  L T I
Sbjct: 473 GQRGFRDRRGHTLFIDARKLGTLI 496


>gi|29349946|ref|NP_813449.1| typeI restriction enzyme EcoR124II M protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341857|gb|AAO79643.1| Type I restriction enzyme EcoR124II M protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 517

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 150/316 (47%), Gaps = 43/316 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++      L        R +YDPT
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGHQRL--------RNVYDPT 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A  G+   I      +GQE  P T+ +    ML+  +     R  +
Sbjct: 233 CGSGSLLLRA----ASIGNAVDI------YGQEKNPTTYNLARMNMLLHGI-----RFSN 277

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K +D
Sbjct: 278 FKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP--RKTAD 334

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
            +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ 
Sbjct: 335 YA--FILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIG 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T   IL  +K  +    +  I+A+  +  ++ + K R    +   ++I
Sbjct: 386 LPANIFYGTSIPT--CILVFKKCRKEDDNILFIDASKEFEKVKTQNKLR----EQHIQKI 439

Query: 453 LDIYVSR-ENGKFSRM 467
           ++ Y  R E  K+S +
Sbjct: 440 VETYRDRKEIEKYSHL 455


>gi|156973426|ref|YP_001444333.1| type I restriction-modification system, methyltransferase subunit
           [Vibrio harveyi ATCC BAA-1116]
 gi|156525020|gb|ABU70106.1| hypothetical protein VIBHAR_01115 [Vibrio harveyi ATCC BAA-1116]
          Length = 862

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 215/494 (43%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---ECALEPTRSAVREKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   + +    +   ++   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALTEDDT 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +   +++      +A  + ++T   S +    +N R+ L ++    +   K +FE   F+
Sbjct: 66  ETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEGI-FT 124

Query: 122 STIARLEKAGLLY-KICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSEGA 174
           +    L K G    K  K  S +      +P        V+  IYE+LI +F +   + A
Sbjct: 125 TLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGYDVLGYIYEYLIEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLA---TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            +F TP +V  L    TA  L   D +          +YDPT G+G  L +  + VA   
Sbjct: 185 GEFYTPHEVSLLMSEITAHELKHKDEI---------EIYDPTSGSGSLLINIGSSVA--- 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----- 286
            + K    +  + QEL+  T+ +    +++R +  D     +   + G TL  D      
Sbjct: 233 KYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPD-----NITTRNGDTLEDDWPYFDE 287

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                 +        +SNPP+ +KW+      E +  +    RFG   PK +     FL+
Sbjct: 288 SNPQESYQPLYVDAVVSNPPYSQKWDP-----ENKENDPRYARFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G     IVL    LF G     E EIR+ L+EN+ I+AI+ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMTIVLPHGVLFRG---GEEGEIRKQLIENNHIDAIIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I T + +L  ++       V +++A+  +     EGK  ++ + D +R I+D  + R+
Sbjct: 394 TGIPTVILVLKQKR---ENNDVLIVDASKHFVK---EGKNNKLQDSDIKR-IIDAVIHRQ 446

Query: 461 -NGKFSRMLDYRTF 473
            N KFS+++  +T 
Sbjct: 447 DNAKFSKVVSKKTI 460


>gi|313669544|ref|YP_004049969.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156741|gb|ADR35416.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 529

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 38/305 (12%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +L  + KNF+GI     T    V   IYE+ +  F     +G  +F TP  +V L T +
Sbjct: 130 AILITLLKNFAGIRFDIGT---DVFGRIYEYFLTEFAKSEGQGGGEFFTPAHLVRLITEI 186

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           + +P              ++DP CG+GG    + + VA+   +      L   GQE   +
Sbjct: 187 I-EPYHG----------KVFDPACGSGGMFVSSASFVAE--HNRNASSELSIFGQEKTGD 233

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDK 309
           T  +    + +  L+ D        I++G++  +D+     +F + ++NPPF      + 
Sbjct: 234 TVRIAKLNLAVHGLQGD--------IKEGNSYYEDIHQCAGQFDFVMANPPF------NV 279

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           + ++KE    +  RF  G+P + +G+ L++      L    N  GRA  V+++S      
Sbjct: 280 NNIQKERIADDKARFPFGMPNVDNGNYLWIQLFYASL----NDTGRAGFVMANSA---AD 332

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E EIRR L  +  ++ +VA+ ++ F+   +   LW L   K + R+ KV  I+A  
Sbjct: 333 ARGSEMEIRRQLTLSGGVDVMVAISSNFFYTVTLPCTLWFLDKGKPQSRKDKVLFIDARH 392

Query: 430 LWTSI 434
           ++  +
Sbjct: 393 IFKQV 397


>gi|160945140|ref|ZP_02092366.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442871|gb|EDP19876.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii
           M21/2]
          Length = 525

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 165/365 (45%), Gaps = 44/365 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRFGS 168
            +F+D+D +S       A    K+ K  +G+ +++   V +       + YE+L+  + S
Sbjct: 141 GLFDDYDVNSNKLGATVAKRNEKLVKLLNGVADMNLGDVKEHDIDAFGDAYEYLMTMYAS 200

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP DV  L T L       + K+    I  +YDP CG+G  L  A   + 
Sbjct: 201 NAGKSGGEFFTPADVSELLTRL-----GTVGKKE---INKVYDPACGSGSLLLKAEKVLG 252

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +         GQE+   T+ +C   M +  +E D + D++    + +  +   + 
Sbjct: 253 RDAVRNGF------FGQEINITTYNLCRINMFLHDIEFD-KFDIA---CEDTLTNPQHWD 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKL 346
            + F   +SNPP+  KW  D++ +          RF P   L   S   + F+MH    L
Sbjct: 303 DEPFELIVSNPPYSIKWAGDENPLLINDP-----RFAPAGVLAPKSKADLAFIMHSLAWL 357

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP++LFF T+IAT 
Sbjct: 358 A----SNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFIDCIIQLPSNLFFGTSIATC 410

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFS 465
           + +L   KT+    KV  I+A+     + N  K    +  +   +I+D +  R E   FS
Sbjct: 411 IMVLKKGKTD---NKVLFIDASSECVKVTNNNK----LTPENINKIVDTFAQRTEEAHFS 463

Query: 466 RMLDY 470
            + +Y
Sbjct: 464 HLAEY 468


>gi|302878640|ref|YP_003847204.1| type I restriction-modification system, M subunit [Gallionella
           capsiferriformans ES-2]
 gi|302581429|gb|ADL55440.1| type I restriction-modification system, M subunit [Gallionella
           capsiferriformans ES-2]
          Length = 553

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 44/358 (12%)

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +D+   +FED D +S+    +  EK  L+ K+  +   I+ +       V+ + YE+LI 
Sbjct: 162 ADDFVNLFEDLDLTSSKLGNSEKEKNALVAKVLTHLDKIDFNLSDSTADVLGDAYEYLIG 221

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S   + A +F TP+ V  L   L+      L        +++YDPTCG+G  L    
Sbjct: 222 EFASGAGKKAGEFYTPQPVSTLLAKLVTAQKQTL--------KSVYDPTCGSGSLLLRVK 273

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     KI      +GQEL   T+ +    M++  +      D   +I+Q  TL +
Sbjct: 274 REAKQVD---KI------YGQELNRTTYNLARMNMILHDVH---YADF--DIKQEDTLER 319

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 RF   ++NPPF  +W   +  +  + +    G+  P     S   M F+ H+  
Sbjct: 320 PQHRELRFDAIVANPPFSAQWSASQLHMSDD-RFSVYGKLAPA----SKADMAFVQHMVY 374

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
           +L       G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I
Sbjct: 375 QLA----EEGTMAVVLPHGVLFRGAA---EGHIRQYLIEQLNCLDAVIGLPANIFYGTSI 427

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            T + +   +K  +    +  I+A+  +  +    K   ++  +  ++I+D Y +R N
Sbjct: 428 PTCVLVF--KKCRKNPDNILFIDASQHFDKV----KTTNVMRPEHIQKIVDTYKARSN 479


>gi|21673506|ref|NP_661571.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
 gi|21646613|gb|AAM71913.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
          Length = 531

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 148/314 (47%), Gaps = 49/314 (15%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           ++  +YE+ + +F G+E   G E F TPR VV +   +L           P   R +YDP
Sbjct: 168 ILGRVYEYFLGQFAGAEGKRGGE-FYTPRSVVRVLVEML----------EPYSGR-VYDP 215

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    +   V + G   +I  I + +GQE       +    + +R +++D R + 
Sbjct: 216 CCGSGGMFVQSEKFVQEHGG--RIGDIAI-YGQESNYTAWRLAKMNLAVRGIDADIRWN- 271

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                +GS   KD     +  Y L+NPPF    W  D+          E  R+  G+P +
Sbjct: 272 ----NEGS-FHKDELRDLKADYILANPPFNISDWGGDRLR--------EDVRWQFGVPPV 318

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+     L PNG   A +VL++  + + +  SGE EIRR +LE D ++ +V
Sbjct: 319 GNANYAWLQHI--YWHLAPNG--TAGVVLANGSMSSNQ--SGEGEIRRAMLEADAVDCMV 372

Query: 392 ALPTDLFFRTNIATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRR 442
           ALP  LF+ T I   LW L+  K           +RRG V  I+A  +   +    + RR
Sbjct: 373 ALPGQLFYSTQIPACLWFLARNKNPANGKTGGLRDRRGHVLFIDARKMGVLVD---RTRR 429

Query: 443 IINDDQRRQILDIY 456
            ++D++ ++I   Y
Sbjct: 430 ELSDEEIQKIARTY 443


>gi|327470618|gb|EGF16074.1| site-specific DNA-methyltransferase [Streptococcus sanguinis SK330]
          Length = 407

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 182/423 (43%), Gaps = 69/423 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES--- 71
           +W  A+ L G    +++ KVI+    L+ +  A E       EKY          E+   
Sbjct: 26  LWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFE-------EKYQQLIAEGDGFENDPD 78

Query: 72  --------FV-KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
                   FV ++A + F  +  +S S +G+        +E    S  +    I+   D 
Sbjct: 79  AYSEENIFFVPEIARWQFIASHAHS-SEIGTVLDEAMREIEEDNPSLENVLPQIYASPDL 137

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +        L ++   F+ I+++       ++   YE+ I +F +   +   +F TP
Sbjct: 138 DKRV--------LGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGGEFYTP 189

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V     +L           P   R +YDP CG+GG    +   + +   H      L
Sbjct: 190 TSIVKTIVEIL----------KPYRGR-VYDPACGSGGMFVQSAKFIEN---HSGNINNL 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE   +T  +    M+IR +++D          Q ++   DL    + +Y ++NPP
Sbjct: 236 SVFGQESNADTWKMAKMNMVIRGIDADFGE------HQANSFFNDLHPTLKANYIMANPP 289

Query: 301 FG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F    W  DK  D +          R+  G P  S+ +  ++ H+ + ++ P NG  +  
Sbjct: 290 FNISNWGADKLQDDI----------RWKYGTPPNSNANYAWIQHMIHHMD-PSNG--KVG 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-NRKTE 416
           +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S N+  +
Sbjct: 337 LVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNKNKK 394

Query: 417 ERR 419
           ERR
Sbjct: 395 ERR 397


>gi|271498973|ref|YP_003331998.1| type I restriction-modification system, M subunit [Dickeya dadantii
           Ech586]
 gi|270342528|gb|ACZ75293.1| type I restriction-modification system, M subunit [Dickeya dadantii
           Ech586]
          Length = 507

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 168/371 (45%), Gaps = 49/371 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDR----- 153
           E+      D  K++F+D  F++     EK   G+L  + + FS  +L  D  P R     
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTDKLGEEKQKNGILKDLLEEFSCADL--DLKPSRIGGLD 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI +F +   + A ++ TP +V  L  A LLDP        PG   T+ DP 
Sbjct: 165 VIGNAYEYLIGKFAANSGQKAGEYYTPPEVSDL-MAELLDP-------QPG--DTICDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+   L      V       +       +GQE    T ++    M +   E + + +  
Sbjct: 215 CGSASLLMKCGRKVVQNHGSKQYEL----YGQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L K  DL   K F    +NPPF   KW         E ++ +  RF  GLP 
Sbjct: 270 DTIRNPKLLDKNGDL---KLFDIVTANPPFSLDKWGY------SEVESDKFSRFRRGLPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F++H+   L+  P  G R  +V+    LF G   S E +IR+ L+E +L++A+
Sbjct: 321 KTKGDYAFILHMIETLK--PKAG-RMGVVVPHGVLFRG---SSEGKIRQKLIEENLLDAV 374

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LFF T I   + I   +K ++    V  I+A+  +    + GK +  ++ +   
Sbjct: 375 IGLPEKLFFGTGIPASILIFKKQKVDDN---VLFIDASREF----DPGKNQNRLSTENIV 427

Query: 451 QILDIYVSREN 461
           +++ IY  R+N
Sbjct: 428 KVVKIYRDRDN 438


>gi|254475169|ref|ZP_05088555.1| type I restriction-modification system, M subunit [Ruegeria sp.
           R11]
 gi|214029412|gb|EEB70247.1| type I restriction-modification system, M subunit [Ruegeria sp.
           R11]
          Length = 515

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 53/360 (14%)

Query: 113 AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            +F DFD +S   RL     +K   L ++ K  +G+ L  +   + +  + YE LI  + 
Sbjct: 129 GLFADFDTTSN--RLGSTVKQKNERLTEVLKGVAGLPLKFEDNKNDLFGDAYEFLISNYA 186

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--- 224
           +   +   +F TP  V  L   L +         +   +  +YDP  G+G  L  A    
Sbjct: 187 ANAGKSGGEFFTPTHVSKLIAKLAM--------HNQTRVNKIYDPAAGSGSLLLQAKEEF 238

Query: 225 -NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ + G            GQE+   T+ +    M +  +  D       NIQ G+TL 
Sbjct: 239 EKHIIEDGFF----------GQEINYTTYNLARMNMFLHNINYDKF-----NIQYGNTLE 283

Query: 284 KDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
              F   K F   +SNPP+  KW+   D            RF P   L   S     F++
Sbjct: 284 DPHFQDDKPFDAIVSNPPYSVKWKGADDPTLINDD-----RFAPAGVLAPKSKADFAFVL 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF 
Sbjct: 339 HALHYL----SATGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFFG 391

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IA  + +L+  K   +   V+ I+AT+  T  R +G    I+ D    +I++++ S++
Sbjct: 392 TTIAVNILVLAKNK---KDTAVRFIDATEEDTFFR-KGVNINIMEDRHIERIVEMFDSKD 447


>gi|290969061|ref|ZP_06560596.1| type I restriction-modification system, M subunit [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781017|gb|EFD93610.1| type I restriction-modification system, M subunit [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 163/359 (45%), Gaps = 53/359 (14%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRFGS 168
            +F DFD +S       A    K+ K  +G+ +++  +V D       + YE+L+  + S
Sbjct: 141 GLFADFDVNSNKLGATVAKRNEKLVKLLNGVADMNLGSVQDHDIDAFGDAYEYLMTMYAS 200

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-----LYDPTCGTGGFLTDA 223
              +   +F TP DV  L T L             G +R      +YDP CG+G  L  +
Sbjct: 201 NAGKSGGEFFTPADVSELLTRL-------------GTVRKTEVNKVYDPACGSGSLLLKS 247

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +  +   G  +        +GQE+   T+ +C   M +  +E D + D++    + + +S
Sbjct: 248 LKVLGKEGVRNGF------YGQEINITTYNLCRINMFLHDVEFD-KFDVA---CEDTLVS 297

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
              +  + F   +SNPP+  KW   +DA           RF P   L   S   + F+MH
Sbjct: 298 PQHWDDEPFELIVSNPPYSIKWAGSEDATLINDP-----RFAPAGVLAPKSKADLAFIMH 352

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP++LFF T
Sbjct: 353 SLSWLA----SNGTAAIVCFPGIMYRGGA---EKKIRQYLVDNNFIDCIIQLPSNLFFGT 405

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +IAT + ++   KT+ R      I+A++    + N  K    +  +   +I+ I+  RE
Sbjct: 406 SIATCIMVMKKNKTDNR---TLFIDASNECVKVTNNNK----LTPENIDRIVAIFTKRE 457


>gi|73748045|ref|YP_307284.1| putative type I restriction-modification system methylation subunit
           [Dehalococcoides sp. CBDB1]
 gi|73659761|emb|CAI82368.1| putative type I restriction-modification system methylation subunit
           [Dehalococcoides sp. CBDB1]
          Length = 645

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 196/449 (43%), Gaps = 66/449 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGS 65
           + A L  F+ K A  L G+  H++F   +      +R+ +  +E  R    +        
Sbjct: 14  TQAELDAFLEKAANILRGNVDHSEFRGYVFALLFFKRISDVYIEEVRKLTAQLGDETLAK 73

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-------DF 118
           +  + +FV   G  +   +  S + +G+T     L   + +     +  F+       DF
Sbjct: 74  DPKMHNFVVPDGSLWDIAARQSRNQVGTT-----LNEAMIAIERANQPKFDGILTSGVDF 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           + +  + R +    L  +  +FS        V D V+ N YE+LIR F S   + + +F 
Sbjct: 129 NDAEKLPRDK----LINLINHFSSQIFDRAHVTDDVLGNAYEYLIRNFASRAGKSSGEFY 184

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP++V +L + ++        +  PG  +++ D   G+GG L    N+V       K P 
Sbjct: 185 TPKEVAYLMSEIV--------EPQPG--QSICDWASGSGGLLLQCRNYVT---RQCKDPD 231

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKN---IQQGSTLSKDLFTGKRFH 293
            L+ + QE    T+ +    M++  ++S   R  D  +N   +  G  L K       F 
Sbjct: 232 RLLLYAQESNLSTYNISRINMILHGVKSWEHRHQDSLRNPLHVDDGKKLLK-------FD 284

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + NPPF  + W  D      + + G+  GRFG G+P  ++G   +L H+   L+    
Sbjct: 285 RIVMNPPFSLEDWGYD------DFQGGDPFGRFGYGMPPRNNGDYAWLEHVLKSLK---- 334

Query: 352 GGGRAAIVLSSSPLF----------NGRAGSGESE--IRRWLLENDLIEAIVALPTDLFF 399
             G+A +V+S   LF          +GR  S ++E  IR   ++ D IE ++ LP+ LF+
Sbjct: 335 DTGKAIVVMSQGVLFRGQPEQTEEDDGRNQSADAEYVIREGFIKADAIECVIVLPSKLFY 394

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINAT 428
              +   L I++  K  ER+ K+ +I A+
Sbjct: 395 GNTVPGCLIIMNKNKPPERKNKILMIWAS 423


>gi|265763432|ref|ZP_06092000.1| type I restriction-modification system, M subunit [Bacteroides sp.
           2_1_16]
 gi|263256040|gb|EEZ27386.1| type I restriction-modification system, M subunit [Bacteroides sp.
           2_1_16]
          Length = 517

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 43/316 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I +F +   + A +F TP++V  +   ++      L        R +YDPT
Sbjct: 181 ILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGHQRL--------RNVYDPT 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A    A  G+   I      +GQE  P T+ +    ML+  ++    +   
Sbjct: 233 CGSGSLLLRA----ASIGNAVDI------YGQEKNPTTYNLARMNMLLHGIKFSNFK--- 279

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P   K +D
Sbjct: 280 --IENGDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP--RKTAD 334

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
            +  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ 
Sbjct: 335 YA--FILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIG 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T   IL  +K  +    +  I+A+  +  ++ + K R    +   ++I
Sbjct: 386 LPANIFYGTSIPT--CILVFKKCRKEDDNILFIDASKEFEKVKTQNKLR----EQHIQKI 439

Query: 453 LDIYVSR-ENGKFSRM 467
           ++ Y  R E  K+S +
Sbjct: 440 VETYRDRKEIEKYSHL 455


>gi|15645469|ref|NP_207643.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313984|gb|AAD07898.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 527

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 165/364 (45%), Gaps = 55/364 (15%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  D +     V  + YE
Sbjct: 135 ENVKGLFADLDVNSNKLGSSHQNRVEK---LTKILEAIGGMQL-GDYLKSGIDVFGDAYE 190

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 191 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNK--------VYDPCCGSGSLL 242

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 243 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHG 290

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  D + +    +     RF P   L   +   +
Sbjct: 291 DTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPILINDE-----RFSPAGVLAPKNAADL 345

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +
Sbjct: 346 AFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDN 398

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y
Sbjct: 399 LFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKERNREKILQTY 451

Query: 457 VSRE 460
           + R+
Sbjct: 452 IERK 455


>gi|330506919|ref|YP_004383347.1| N-6 DNA methylase [Methanosaeta concilii GP-6]
 gi|328927727|gb|AEB67529.1| N-6 DNA Methylase [Methanosaeta concilii GP-6]
          Length = 546

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 188/453 (41%), Gaps = 66/453 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VRE---KYLAFGGSN 66
           L  ++W  A  + G      F   ILP    +RL    E   +A VRE   + LA     
Sbjct: 34  LETWLWDAACAIRGATDAPKFKDFILPLVFFKRLSDVFEDEFAAHVREYGDEELARTIVE 93

Query: 67  IDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKAIFE 116
            DL   +K        FY   +Y+   + +      L  ++       A  + + + + +
Sbjct: 94  EDLAHSLKTGSTPIIRFYVPGDYNWRAIRNHGADGRLGEFVTESLREVARLNPDLQGVLD 153

Query: 117 DFDFSS------TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
             D++       T+       L+  + ++  G+E   +  PD ++   YE+L+R+F    
Sbjct: 154 IKDYNERQSGQRTLDDDRLGALIEVLSRHRLGLE---NAEPD-ILGRAYEYLLRKFAEGQ 209

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA--MNHVA 228
            + A +F TP++V  L   L+           P    T+YDP CG+GG L  A  +    
Sbjct: 210 GQSAGEFYTPKEVGDLIAELI----------DPVPYSTIYDPACGSGGLLIKARLLYERR 259

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 + P +    GQEL P T A+    M +             +   G T  K  F 
Sbjct: 260 HPDERSRAPRLW---GQELNPVTFAMAKMNMFLHDY-------TDSSFAIGDTFRKPGFG 309

Query: 289 GK----RFHYCLSNPPFGKKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +    +F Y ++NP     W +D   DA    ++N    RF  G+P  S     ++ H+
Sbjct: 310 PEGSLMQFDYVVANP----MWNQDNYDDAF---YENDSFNRFNFGIPPRSSADWGWVQHM 362

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLENDLIEAIVALPTDLFF 399
              L+     GGRAA+VL +  +  G      + E  IR+  +E D IE +V LP +LF+
Sbjct: 363 FASLK----EGGRAAVVLDTGAVSRGSGSRSSNREKAIRQAFVEADAIEGVVLLPENLFY 418

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            T     + +L   K EER G++ L+NA++ + 
Sbjct: 419 NTTAPGIILLLRKGKPEERAGQILLVNASNYFV 451


>gi|198284500|ref|YP_002220821.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667614|ref|YP_002427163.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249021|gb|ACH84614.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519827|gb|ACK80413.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 525

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 142/318 (44%), Gaps = 56/318 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  +YE+ + RF S   +   +F TP  VV     +L     A +K        +YDP 
Sbjct: 162 TLGRVYEYFLGRFASAEGKRGGEFYTPASVVRTLVTML-----APYKGR------IYDPC 210

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  I V +G+E  P T  + +  + IR +E+D      
Sbjct: 211 CGSGGMFVQSEKFIEAHGG--KVGDISV-YGEESNPNTWKLALMNLAIRGIEAD------ 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T  KDL    R  Y L+NPPF    W  D    +K        R+  G+P   
Sbjct: 262 LGPEAADTFHKDLHPDLRADYILANPPFNISDWGGDLLRDDK--------RWQYGIPPTG 313

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +   L P G   A  VL++  + +    SGE EIR+ L+E DL++ +VA
Sbjct: 314 NANFAWVQHMVH--HLAPYG--IAGFVLANGSMSSNT--SGEGEIRKNLIEADLVDCMVA 367

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----------ERRGKVQLINATDLWTSIRNEG---- 438
           +P  LF+ T I   LW L+  + +          ER G+V  I+A       RN G    
Sbjct: 368 MPGQLFYSTQIPVCLWFLAKNRDDGRGMTGKELFERTGEVLFIDA-------RNMGFMAD 420

Query: 439 KKRRIINDDQRRQILDIY 456
           +  R + D+  ++I D Y
Sbjct: 421 RTHRELTDEDIQKIADTY 438


>gi|253577074|ref|ZP_04854396.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843568|gb|EES71594.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 507

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 42/308 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +   +F TP  VV L   ++           P   R +YDP 
Sbjct: 149 VLGRVYEYFLSKFASAEGKNGGEFYTPNSVVRLLVEMI----------QPFKGR-VYDPC 197

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     +I  I + +GQE  P T  +C   + IR +      D +
Sbjct: 198 CGSGGMFVQSEKFVEE--HQGRIGDIAI-YGQESNPTTWKLCKMNLAIRGI------DGN 248

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T   DL    +  Y L+NPPF    W  ++          E  R+  G+P   
Sbjct: 249 LGEHHADTFHNDLHKNLKADYILANPPFNISDWGGERLT--------EDARWTYGVPPAG 300

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ NKL   P+G   A  VL++  +    + + E EIR  L+  DL++ IV 
Sbjct: 301 NANYAWIQHIVNKL--APSG--VAGFVLANGSM--STSTTAEFEIRSKLVNADLVDCIVT 354

Query: 393 LPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF+ T I   LW ++  K      +RRG++  I+A  +   +    +  R ++ + 
Sbjct: 355 LPGQLFYSTQIPVCLWFIAKNKAPKGFRDRRGEILFIDARKMGHMV---DRTHRELSTED 411

Query: 449 RRQILDIY 456
            R+I D Y
Sbjct: 412 IRKIADTY 419


>gi|145637382|ref|ZP_01793042.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittHH]
 gi|145269474|gb|EDK09417.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittHH]
          Length = 514

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 199/484 (41%), Gaps = 76/484 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA--------- 111
              D+++  +K  GY  Y +  +    +  GS  N   +L+       ++A         
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L
Sbjct: 182 YLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A          H I       GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGN 282

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S     
Sbjct: 283 TLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ ++A++AL  +L
Sbjct: 338 FILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 391 FFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 443

Query: 458 SREN 461
            +E+
Sbjct: 444 DKED 447


>gi|256853743|ref|ZP_05559108.1| type I restriction-modification system M subunit [Enterococcus
           faecalis T8]
 gi|256710686|gb|EEU25729.1| type I restriction-modification system M subunit [Enterococcus
           faecalis T8]
 gi|315030240|gb|EFT42172.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4000]
 gi|315144777|gb|EFT88793.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2141]
          Length = 530

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 187/407 (45%), Gaps = 56/407 (13%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+   + EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--SPEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V  + A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+      G
Sbjct: 298 VVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK----ETG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  +K
Sbjct: 349 TMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVL--KK 403

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             + R  V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 404 NRQNR-DVLFIDASREFVKGKNQNK----LSEENIQKILENYAERKD 445


>gi|55822680|ref|YP_141121.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus CNRZ1066]
 gi|55738665|gb|AAV62306.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus CNRZ1066]
          Length = 534

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 207/498 (41%), Gaps = 65/498 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---------ECALEPT 51
           M+E T ++ SL   +W +A+ L       D+   +L     + L         E   E T
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 52  RS-----AVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            S     AV  KY     ++ DL + +     Y+ +    ++       +    LE    
Sbjct: 61  ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKA------IFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++      +FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +      A          TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDKQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +        + P  +V  GQEL   T+ +    M++  +  +     ++ +
Sbjct: 233 GSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE-----NQFL 280

Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG   PK S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGKLAPK-SKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T++ T + IL   +T      V  I+A+  +    ++GK + I+ D    +IL+
Sbjct: 390 ANIFFNTSVPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYR 471
            Y SRE+  KF+ +  + 
Sbjct: 443 AYKSREDIDKFAHLASFE 460


>gi|114563124|ref|YP_750637.1| type I restriction-modification system, M subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|114334417|gb|ABI71799.1| type I restriction-modification system, M subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 523

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 200/491 (40%), Gaps = 68/491 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSN 66
           A L   IW  A D+ G     DF + +L     R +    E   +   E   Y A   S+
Sbjct: 8   AELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFELYITGGDESVNYAAMDDSD 67

Query: 67  IDL----ESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
            ++    +  ++  GY    +   S  + +   + N   +L +  A+  ++A        
Sbjct: 68  ENIIAAKDDAIRTKGYFILPSQLFSNVAANAHKNENLNTDLATIFAAIENSANGYDSEKD 127

Query: 112 -KAIFEDFDFSS-----TIARLEK--AGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHL 162
            K +F DFD +S     T+    K  A +L  +    F   E   +     +  + YE L
Sbjct: 128 IKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGDAYEFL 187

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +             +  +YDP  G+G  L  
Sbjct: 188 ISNYAANAGKSGGEFFTPQHVSKLIAQLAM--------HGQTSVNKIYDPAAGSGSLLLQ 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H       H I       GQEL   T+ +    M +  +  D       NIQ G TL
Sbjct: 240 AKKHF----DAHIIEDGFF--GQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 288

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
           ++  F   K F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 289 TEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFV 343

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G     E +IR++L++N+ +E +++L  +LFF
Sbjct: 344 LHALSYL----SSKGRAAIVCFPGIFYRGGV---EQKIRQYLVDNNYVETVISLAPNLFF 396

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +LS  KT+      Q I+A+ L+    N       ++++   QI+ ++ ++
Sbjct: 397 GTTIAVNILVLSKHKTDT---TTQFIDASGLFKKETN----NNTLSNEHIEQIIKVFANK 449

Query: 460 EN-GKFSRMLD 469
           EN   F++ +D
Sbjct: 450 ENVDHFAKSVD 460


>gi|319902373|ref|YP_004162101.1| type I restriction-modification system, M subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417404|gb|ADV44515.1| type I restriction-modification system, M subunit [Bacteroides
           helcogenes P 36-108]
          Length = 515

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 201/479 (41%), Gaps = 70/479 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFGGS 65
           L + IWK A ++ G     DF + +L  TL  R         +E    ++    ++    
Sbjct: 10  LQSTIWKIANEVRGAVDGWDFKQFVLG-TLFYRFISENFTDYIEGGDDSINYANMSDDVI 68

Query: 66  NIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-------------NA 111
            I++ +  +K  GY  Y  S+  ++   S NT  NL + +A+  +             + 
Sbjct: 69  TIEIKDDAIKTKGYFIY-PSQLFVNIAKSANTNPNLNTDLAAIFNAIEGSANGYPSEHDI 127

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
           K +F DFD +S   RL     EK   L  + K    ++L    D   D +  + YE LI 
Sbjct: 128 KGLFADFDTTSN--RLGNTVEEKNKRLAAVIKGVECLDLGNFEDNKID-LFGDAYEFLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP++V  L   L L    ++ K        +YDP CG+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQNVSKLIAQLALSGQTSVNK--------IYDPACGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                    H I       GQE+   T+ +    M +  +  D       +I  G TL  
Sbjct: 237 KQF----DAHLIEEGF--FGQEINHTTYNLARMNMFLHNINYDKF-----DIALGDTLIN 285

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             +  ++ F   +SNPP+   W    D            RF P   L   S     F++H
Sbjct: 286 PQYGDEKPFDAIVSNPPYSVNWVGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++LP +LF+ T
Sbjct: 341 ALSYL----SARGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +IA  + +LS  KT+    K Q I+A+        +     ++ D    +I+D++  +E
Sbjct: 394 SIAVNILVLSKHKTDT---KTQFIDAS--GEEFFKKETNNNVLTDRHIAKIIDLFNKKE 447


>gi|317178792|dbj|BAJ56580.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 529

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 167/367 (45%), Gaps = 61/367 (16%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 137 ENLKGLFADLDVNSNKLGSSHKNRVEK---LNKILQAIGGMQLGDYQKSGID-VFGDAYE 192

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 193 YLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLL 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 245 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIALG 292

Query: 280 STL----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
            TL     KD    + F   +SNPP+  KW  D + +    +     RF P   L   + 
Sbjct: 293 DTLLDPKHKD---DEPFDAIVSNPPYSTKWAGDNNPILINDE-----RFSPAGVLAPKNA 344

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++AL
Sbjct: 345 ADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIAL 397

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL
Sbjct: 398 PDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKIL 450

Query: 454 DIYVSRE 460
             Y  R+
Sbjct: 451 KTYTERK 457


>gi|298736553|ref|YP_003729079.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|298355743|emb|CBI66615.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 523

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 170/372 (45%), Gaps = 56/372 (15%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 135 ENVKGLFADLDVNSNKLGSSHKIRVEK---LTKILEAIGGMQLGDYQQSGID-VFGDAYE 190

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 191 YLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLL 242

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 243 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIALG 290

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  D + +    +     RF P   L   +   +
Sbjct: 291 DTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLINDE-----RFSPAGVLAPKNAADL 345

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +
Sbjct: 346 AFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDN 398

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y
Sbjct: 399 LFFGTSIATCILVLKKNKKDDT---TLFIDASKEFVK---EGKKNK-LKERNREKILQTY 451

Query: 457 VSRENGK-FSRM 467
           + R+  K FS +
Sbjct: 452 IERKEVKHFSSL 463


>gi|220934949|ref|YP_002513848.1| type I restriction-modification system specificity subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996259|gb|ACL72861.1| type I restriction-modification system specificity subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 799

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 44/314 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   +L      +   S     T+YD
Sbjct: 135 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRVMAQIL-----GIRNASTSADTTVYD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      VAD          +  +GQE +  T  +    M+   L ++P   
Sbjct: 190 PTCGSGSLLL----KVADEAGTD-----VTLYGQEKDAATSGLARMNMI---LHNNP--- 234

Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
            +  I QG+TL+   F    + K F Y ++NPPF  K+W    D     H+     RF  
Sbjct: 235 -TALIMQGNTLADPKFLDGQSLKTFDYVVANPPFSDKRWSTGLDPASDPHE-----RFKH 288

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P    G   +L+H+   L+      GR A +L    LF G A   E++IRR L+   
Sbjct: 289 YGIPPDKQGDYAYLLHILRSLK----STGRGACILPHGVLFRGNA---EADIRRNLVRKG 341

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LF+ T I   + ++   +   R G + +I+A+        +G K R+ +
Sbjct: 342 YIKGIIGLPPNLFYGTGIPACIVVVDKAEAHGRDG-IFMIDAS---GGFMKDGPKNRLRS 397

Query: 446 DDQRRQILDIYVSR 459
            D  + I+D++  +
Sbjct: 398 QDIHK-IVDVFTKQ 410


>gi|209527338|ref|ZP_03275846.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209492196|gb|EDZ92543.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 497

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 147/323 (45%), Gaps = 56/323 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F  +  +G  +F TP+ VV L   ++           P   R +YDP 
Sbjct: 135 ILGRVYEYFLGQFAEKEGKGGGEFYTPQSVVRLLVEMI----------QPYKGR-IYDPC 183

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    +H      +  +GQE  P T  +C+  + IR +      D +
Sbjct: 184 CGSGGMFVQSEKFVE---AHGGRKGDIAIYGQESNPTTRRLCLMNLAIRGI------DGN 234

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +Q  + + DL    +  Y L+NPPF    W  +K A        E  R+  G P   
Sbjct: 235 IGDRQADSFTNDLHKDLKADYILANPPFNISDWWNEKLA--------EDVRWQYGTPPKG 286

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +   L PNG   A  VL++  + + +  SGE +IR+ L+ +DL++ ++A
Sbjct: 287 NANYAWIQHIIH--HLAPNG--IAGFVLANGSMSSNQ--SGEGDIRKALIASDLVDCMIA 340

Query: 393 LPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINATDLWTSIRNEGKKRR 442
           LP  LF+ T I   LW ++  K+            R+G+   I+A           +K  
Sbjct: 341 LPGQLFYTTQIPACLWFVARDKSGKPTAGHKPCRNRKGQTLFIDA-----------RKLG 389

Query: 443 IINDDQRRQILDIYVSRENGKFS 465
           ++ D   R+++D  ++R  G + 
Sbjct: 390 VLIDRTHRELIDEELARIAGTYQ 412


>gi|309808312|ref|ZP_07702218.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168459|gb|EFO70571.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 398

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 178/453 (39%), Gaps = 77/453 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIE---- 107

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MSNIYEHL 162
                  E   L   + KN++  +L+   + D V                  +   YE+ 
Sbjct: 108 ------AENKTLKDVLPKNYASPDLNKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYC 161

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F  +  +   +F TP  +V    ++L   D+            +YD  CG+GG    
Sbjct: 162 IAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQ 211

Query: 223 AMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   + A  G+   I      +GQE   +T  +    M IR +++D          Q  T
Sbjct: 212 SAKFIRAHSGNRGSISI----YGQEANADTWKMAKMNMAIRGIDAD------LGPYQADT 261

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            + DL    +  + L+NPPF    W ++K  D V          R+  G P   + +  +
Sbjct: 262 FTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNANYAW 311

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+ +   L PNG  +  +VL++  L       GE EIR+ ++E+DLIE I++LP  LF
Sbjct: 312 IQHMIH--HLAPNG--KIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISLPPKLF 365

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           +  +I   LW +S  K ++ +  + ++   D W
Sbjct: 366 YSVSIPVTLWFISKNKNKKEKQSLLMLAKWDTW 398


>gi|257094282|ref|YP_003167923.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046806|gb|ACV35994.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 539

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 141/311 (45%), Gaps = 47/311 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  ++E+ + +F S   +    F TP  VV +   +L          +P   R +YDP 
Sbjct: 167 LLGRVFEYFLTQFASAEGKNGGQFYTPSCVVRVLVEML----------APYKGR-IYDPC 215

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V   G   ++  I + +GQE  P T  + +  + +R +E+D      
Sbjct: 216 CGSGGMFVQSEKFVEAHGG--QLGDISI-YGQESNPTTRRLAIMNLALRGIEAD------ 266

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             ++   T  +DL    R  Y L+NPPF    W +  D V          R+  G+P   
Sbjct: 267 FGVENADTFRRDLHPDLRADYVLANPPFNDSDWFRKDDDV----------RWQFGVPPKG 316

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H  +   L P   G A  VL++  + + +  SGE +IR+ L+E DL++ +VA
Sbjct: 317 NANFAWVQHFIH--HLAP--AGFAGFVLANGSMSSNQ--SGEGDIRQQLIEADLVDCMVA 370

Query: 393 LPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           LP  LF+ T I   LW L+  K         ERR +   I+A  L T I    +  R + 
Sbjct: 371 LPGQLFYSTQIPVCLWFLTKSKAAEAKRHFRERRKQTLFIDARKLGTLI---DRVHRELT 427

Query: 446 DDQRRQILDIY 456
           D   ++I+  Y
Sbjct: 428 DADLQKIVTTY 438


>gi|219851734|ref|YP_002466166.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
 gi|219545993|gb|ACL16443.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
          Length = 513

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 198/461 (42%), Gaps = 51/461 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W+ A  + G+     +   ILP   L+RL    +     +   Y      N DL 
Sbjct: 15  LESWLWEAACKIRGEIDAPKYKDYILPLIFLKRLSDVFDDEAKKMERTY-----GNRDLV 69

Query: 71  SFVKVAGYS---FYNTSEYSLSTLGSTNT-----RNNLESYIASFSDNAKAIFEDFDFSS 122
             +    +    FY   E     +   +T       +    IA  +   +   +  DF++
Sbjct: 70  EKILAEDHQLVRFYLPPESRWDAIAQKSTGLGELLTDAMRSIARENPKLQGSIDIVDFNA 129

Query: 123 TIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           T A  R+     L  +        L    V   ++ + YE+L+R+F     + A +F TP
Sbjct: 130 TAAGQRIIPDDSLRTLIGVMGKYRLGLADVEPDIIGHAYEYLLRKFAEGSGQSAGEFYTP 189

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI- 239
           R+V  L  A +LDP        PG    +YDP CG+GG L     +  +   +H  P + 
Sbjct: 190 REVA-LLMARILDP-------KPG--EEVYDPCCGSGGLLIKCAMYFRE--RYHNDPEVA 237

Query: 240 -LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQE +  T A+      I  +E+  +  L   ++    L++D  + + F    +N
Sbjct: 238 PLQFCGQENQHSTFAMAKMNTFIHDMEA--QIALQDTMRFPQFLNRD-GSLRLFDIVTAN 294

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P + + +E      +K ++     RF  G P  S     ++ H+   L+      GR A+
Sbjct: 295 PMWNQDFE------QKIYETDTYNRFTIGYPPSSSADWGWIQHMFASLK----KNGRMAV 344

Query: 359 VLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           VL +  +  G   +G   E +IR+   E+DL+EA++ LP +LF+ T     + +++  K 
Sbjct: 345 VLDTGAVSRGSGNTGKNRERDIRKNFAEHDLVEAVILLPENLFYNTTAPGIILVINQGKL 404

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              +G++ L+NA+ L+     +G+ +  I D+   Q+  I+
Sbjct: 405 --HKGEILLVNASKLF----QKGRPKNFIPDECIAQVAGIF 439


>gi|321310237|ref|YP_004192566.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
 gi|319802081|emb|CBY92727.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
          Length = 523

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 38/313 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+   YEHL+ ++ S   +   +F TP +V  L T + +     +   S G    +YDP 
Sbjct: 183 VLGEAYEHLMEQYASTSGKKGGEFYTPPEVSRLLTKIAVGDKTYI---SGG----VYDPA 235

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L   +N +                GQE    T+ +C   M +  +  +      
Sbjct: 236 CGSGSLLLKCVNLLGAKNVSEMC-------GQEKNMTTYNLCRMNMFLHGVNYNKF---- 284

Query: 274 KNIQQGSTLS--KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +I+ G TL       + KRF   +SNPP+  KW  + D   K   +    + G   PK 
Sbjct: 285 -DIRHGDTLEYPDPARSKKRFEIIVSNPPYSAKWAGEDDV--KLLTDPRFEQVGALAPK- 340

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H  + L    +  G+A IV ++  L   R G  E  IR+WL+  + IE+++
Sbjct: 341 SAADFAFILHCLHLL----SSTGKAVIVCATGVL--TRLGK-EKHIRKWLISQNYIESVI 393

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            L   LF+ T ++  + ILS  K++     V  ++AT+++   RN+ +    ++D+   Q
Sbjct: 394 YLAPKLFYETGVSVVIMILSKSKSD---SNVLFVDATNIFIKDRNQNR----LSDENIAQ 446

Query: 452 ILDIYVSRENGKF 464
           IL IY  R N  F
Sbjct: 447 ILKIYRERVNVPF 459


>gi|86143513|ref|ZP_01061898.1| type I restriction-modification system specificity subunit
           [Leeuwenhoekiella blandensis MED217]
 gi|85829960|gb|EAQ48421.1| type I restriction-modification system specificity subunit
           [Leeuwenhoekiella blandensis MED217]
          Length = 513

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 35/269 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE L+++   +   GA  + TPR ++    A +           P   +T+ DP 
Sbjct: 138 IKGKIYEGLLQKNAEDTKSGAGQYFTPRSLIQAIVACV----------QPQPKKTIADPA 187

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRL-E 265
           CGTGGF   A + + +   HHK+             HG E+   T  +C+  M +  + E
Sbjct: 188 CGTGGFFLAAYDWIVE---HHKLDKEEKQFLKNNTFHGNEIVANTRRMCIMNMYLHNIGE 244

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D    ++ N    + ++ D   GKRF Y L+NPPFGKK        E E +  +L    
Sbjct: 245 IDGEPFINPN---DALIADD---GKRFDYVLANPPFGKKSSMTITNEEGEQEKEDLSYNR 298

Query: 326 PGLPKISDGSML-FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
               + S    L FL H+  +L++     G+AA+VL  + LF G AG    E+R+ LL+ 
Sbjct: 299 QDFWETSSNKQLNFLQHIKTQLKI----NGKAAVVLPDNVLFEGGAG---EEVRKQLLKT 351

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             +  I+ LPT +F+R  +   +    N+
Sbjct: 352 ADLHTILRLPTGIFYRPGVKANVLFFKNK 380


>gi|240948006|ref|ZP_04752424.1| type I restriction-modification system methyltransferase subunit
           like protein [Actinobacillus minor NM305]
 gi|240297676|gb|EER48150.1| type I restriction-modification system methyltransferase subunit
           like protein [Actinobacillus minor NM305]
          Length = 533

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 156/325 (48%), Gaps = 46/325 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           ++  + E+ ++ F  +   G E  +F TP  +V L  A L++P +           T+YD
Sbjct: 158 LIGRVQEYFLQVFAIDSGVGKEKGEFYTPSSIVEL-IAELIEPYNG----------TVYD 206

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CGTGG    ++  V +   + K   I+   GQE  P+T  +    + +R         
Sbjct: 207 PCCGTGGMFVQSLKFVENHQGNRKNISIV---GQESNPDTWRLAKMNLALR--------G 255

Query: 272 LSKNIQQG--STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGL 328
           ++ N+ +   ST + D +   + +Y ++NPPF  K  +D++ +  +       RF G  +
Sbjct: 256 IAHNLGESAVSTFTHDQWKDLKVNYIMANPPFNLKDWRDQNELTDDP------RFAGYAV 309

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLEND 385
           P  S+ +  +++H+ +KL+      G A  +L++  L  G        E  IR+ L+END
Sbjct: 310 PPKSNANYAWILHMLSKLD---ETDGIAGFLLANGALNTGGDKPDTDTEYAIRKQLIEND 366

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRNEG----- 438
            +EAI+ LP ++F+ T+I+  LWI++N K +      QL N  +  L+  +R        
Sbjct: 367 KVEAIIVLPREMFYSTDISVTLWIVNNNKKQRSLNGRQLRNRQNEILFMDLRTLNSHIYE 426

Query: 439 KKRRIINDDQRRQILDIYVSRENGK 463
           KK   +   +  Q+ +IY + + GK
Sbjct: 427 KKYVQLTAQEISQVCEIYFNWQTGK 451


>gi|312875021|ref|ZP_07735039.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089416|gb|EFQ47842.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2053A-b]
          Length = 502

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/484 (22%), Positives = 195/484 (40%), Gaps = 82/484 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIE---- 107

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MSNIYEHL 162
                  E   L   + KN++  +L    + D V                  +   YE+ 
Sbjct: 108 ------AENKTLKDVLPKNYASPDLAKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYC 161

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F  +  +   +F TP  +V    ++L   D+            +YD  CG+GG    
Sbjct: 162 IAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQ 211

Query: 223 AMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   + A  G+   I      +GQE   +T  +    M IR +++D          Q  T
Sbjct: 212 SAKFIRAHSGNRGSISI----YGQEANADTWKMAKMNMAIRGIDADL------GPYQADT 261

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            + DL    +  + L+NPPF    W ++K  D V          R+  G P   + +  +
Sbjct: 262 FTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNANYAW 311

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+ +   L PNG  +  +VL++  L       GE EIR+ ++E+DLIE I+++P+ LF
Sbjct: 312 IQHMIH--HLAPNG--KIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISMPSKLF 365

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +   ++  LW ++  K ++++GK   I+A  +   +    +K R   D+  +++ + + +
Sbjct: 366 YSVTLSVTLWFIT--KDKKQKGKTLFIDARHMGHMV---DRKHRDFTDEDIQKLANTFEA 420

Query: 459 RENG 462
            +NG
Sbjct: 421 FQNG 424


>gi|269793144|ref|YP_003318048.1| type I restriction-modification system, M subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100779|gb|ACZ19766.1| type I restriction-modification system, M subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 522

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 203/495 (41%), Gaps = 79/495 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW  A DL G     DF + +L     R +    E   + +       G +  D
Sbjct: 11  AELHRTIWNMANDLRGSVDGWDFKQYVLGMLFYRYIS---ENITAYINAGEWEAGNTEFD 67

Query: 69  L------------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-------- 108
                        E  VK  G+    +  +      + +  N  E+    FS        
Sbjct: 68  YAKLSDEEAEQAREDLVKTKGFFILPSELFENVRARAKDDENLNETLEQIFSNIEASAQG 127

Query: 109 ----DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSN 157
               DN K +F+D D +S     T+A+  +   L K+  +   ++L  + D   D    +
Sbjct: 128 TESEDNFKGLFDDIDVNSNKLGNTVAKRNEK--LVKLLNSVGEMKLGDYKDNTID-AFGD 184

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE L+  + S   +   ++ TP++V  L T L +             +  +YDP CG+G
Sbjct: 185 AYEFLMGMYASNAGKSGGEYYTPQEVSELLTHLTI--------VGKTEVNKVYDPACGSG 236

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L   +      G  +         GQE+   T+ +C   M +  ++ D       +I 
Sbjct: 237 SLL---LKFAKILGKENVRQGFF---GQEINITTYNLCRINMFLHDIDYDKF-----DIA 285

Query: 278 QGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+    +  + F   +SNPP+  KW+ D D +          RF P   L   S  
Sbjct: 286 LGDTLTDPQHWDDEPFEAIVSNPPYSIKWKGDSDPILINDP-----RFSPAGVLAPKSKA 340

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP
Sbjct: 341 DLAFIMHSLSWLAT----NGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNYIDCIIQLP 393

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IAT + +L   K++        I+A+  +  + N  K    +  +  + IL+
Sbjct: 394 DNLFYGTSIATCIMVLKKSKSD---NSTLFIDASKEFVKVTNNNK----LTQENIKNILN 446

Query: 455 IYVSREN-GKFSRML 468
            Y+ R++   F+R++
Sbjct: 447 TYIDRKDIEHFARLV 461


>gi|496158|gb|AAA65633.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis]
          Length = 520

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 174/384 (45%), Gaps = 50/384 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDF----DFSS-TIARL--EKAGLLYKICKNFSGIELHPDTV 150
           N +ES  +  +D  K  F+D     DFS+  +  +  EK   +  I K  + + L  D V
Sbjct: 114 NKIESINSELNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIKEINTLNLSMDEV 173

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 N YE+L+  F S+  + A +F TP  V  L   ++              I   Y
Sbjct: 174 DH--FGNTYEYLLSEFASDTGKKAGEFYTPSKVSELLVKIV--------SHGKNKINKAY 223

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L    N V   G ++KI      +GQE++  T+ +     ++R +   P  
Sbjct: 224 DPACGSGSLLIKLANKV---GKYNKI------YGQEVKTATYNLARMNFILRGV---PFS 271

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            L  +++ G TL   L   +   F   ++NPPF +KW   ++  +    N       P L
Sbjct: 272 KL--DLRSGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNS-----YPSL 324

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL H+     +  + G  A++   S  + + ++   E +IR+++++ + I+
Sbjct: 325 APKSYADFAFLQHML--FHVNKDNGIIASVF--SLGILSRKSPKAEEDIRKYIIDKNYID 380

Query: 389 AIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            I+ LP +LF+ T+I + + +   N+ T ++R  + +INAT  + +     KK+  ++D+
Sbjct: 381 TIIFLPPNLFYNTSIESCIIVARKNKPTNDKR--IFMINATKEFQN----AKKQNTLSDE 434

Query: 448 QRRQILDIYVS-RENGKFSRMLDY 470
              +I   +   RE   FS+ + Y
Sbjct: 435 NINRIFSAWKEKREEENFSKYISY 458


>gi|332673346|gb|AEE70163.1| type I restriction-modification system [Helicobacter pylori 83]
          Length = 583

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 163/361 (45%), Gaps = 49/361 (13%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLI 163
           +N K +F D D +S     +   +   L +I +   G++L  +  +  D V  + YE+L+
Sbjct: 191 ENVKGLFADLDVNSNKLGSSHKNRVKKLNEILQAIGGMQLGDYQKSGID-VFGDAYEYLM 249

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 250 TMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQF 301

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTL 282
              + D              GQE+   T+ +C   M +  +      + SK +I  G TL
Sbjct: 302 SKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGDTL 349

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
                     F   +SNPP+  +W  DK+ +    +     RF P   L       + F 
Sbjct: 350 LDPKHEDDEPFDAIVSNPPYSIEWVGDKNPILINDE-----RFSPAGVLAPKKTADLAFT 404

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+ + L    +  G AAIV     L+ G A   E++IR +L++N+ I+ ++ALP +LFF
Sbjct: 405 MHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVQNNFIDCVIALPDNLFF 457

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y  R
Sbjct: 458 GTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILKTYTER 510

Query: 460 E 460
           +
Sbjct: 511 K 511


>gi|146329144|ref|YP_001209148.1| type I restriction-modification system, M subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232614|gb|ABQ13592.1| type I restriction-modification system, M subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 826

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 46/324 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLY 210
           D ++ + YE+L+R F S+  +    F TP +V  +   ++ + P + +         T Y
Sbjct: 139 DDILGDAYEYLMRHFASQSGKSKGQFYTPSEVSRIMAKIVGISPANTVAS------TTAY 192

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L   +   A+ G      PI +  GQE++  T  +    M++    +    
Sbjct: 193 DPTCGSGSLL---LKVAAEAGK-----PITL-EGQEMDVTTAGLARMNMILHDFPT---- 239

Query: 271 DLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
               NI QG+TL+   F      + + Y ++NPPF  K W     +      N    RF 
Sbjct: 240 ---ANILQGNTLTSPKFKDGELLRTYDYVVANPPFSDKTW-----STGLTPANDAYQRFV 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P    G   +L+H+   ++      G+ A +L    LF G A   E+ IR  L+++ 
Sbjct: 292 WGEPPKKQGDYAYLLHIIRSMK----STGKGACILPHGVLFRGNA---EAVIREKLVQSG 344

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +++ I+ LP++LF+ T I   + +L      ER+G + +I+A+        +G K R+  
Sbjct: 345 ILKGIIGLPSNLFYGTGIPACILVLDKETASERKG-IFMIDAS---KGFIKDGAKNRLRE 400

Query: 446 DDQRRQILDIYVS-RENGKFSRML 468
            D  + I+D +    E  ++SRM+
Sbjct: 401 QDIHK-IVDTFTKLTELPRYSRMV 423


>gi|15678962|ref|NP_276079.1| type I restriction modification enzyme, subunit M
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622040|gb|AAB85440.1| type I restriction modification enzyme, subunit M
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 616

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 169/374 (45%), Gaps = 45/374 (12%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  +   K + + FDF       E   +L ++ + FS  +L  +  PD ++ + YE ++
Sbjct: 217 LAELNPAFKDVVDAFDFVEFTQSQENREILRQLVELFSEKKL-TNVDPD-ILGDAYEWIL 274

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F    ++  E + TPR+V+ L   +L DP        PG   ++YDP   + G L  +
Sbjct: 275 RYFAPTKAKEGEVY-TPREVIRLLVEIL-DP-------KPG--ESVYDPASASNGMLIIS 323

Query: 224 MNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             +V +  G   +    L  +GQE+  +T A+    M I  ++         +I  G TL
Sbjct: 324 HKYVKETYGEAER----LFLYGQEVNRKTMALGSMNMYIHDIKD-------HHIAHGDTL 372

Query: 283 SKDLFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKISDGSM 336
               F       RF   ++NPP    W +D    E   K G+    RF  G         
Sbjct: 373 LYPKFKESDGIMRFDVVIANPP----WNQDGYG-EDTLKKGDYWRERFRYGFVNKQSADW 427

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H+           GR  +V+ +  LF G     E  IR  +LE+DLIEA++ LP  
Sbjct: 428 AWIQHMIA----SAKDDGRIGVVIDNGCLFRG---GREKSIRSAVLEDDLIEAVILLPEK 480

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T     + IL+  K EERRGKV  INA + +     E +K  I++D    +IL+ Y
Sbjct: 481 LFYNTGAPGAIIILNKDKDEERRGKVLFINAGEEYEK-HPEVRKLNILSDGNIERILEAY 539

Query: 457 VS-RENGKFSRMLD 469
              + +  FSR++D
Sbjct: 540 REFQGDDGFSRVVD 553


>gi|319428170|gb|ADV56244.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens 200]
          Length = 523

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 201/491 (40%), Gaps = 68/491 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSN 66
           A L   IW  A D+ G     DF + +L     R +    E   +   E   Y A   S+
Sbjct: 8   AELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESVNYTAMDDSD 67

Query: 67  IDL----ESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
            ++    +  ++  GY    +   S  + +   + N   +L +  A+  ++A        
Sbjct: 68  ENIIAAKDDAIRTKGYFILPSQLFSNVAANAHKNENLNTDLATIFAAIENSANGYDSEKD 127

Query: 112 -KAIFEDFDFSS-----TIARLEK--AGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHL 162
            K +F DFD +S     T+    K  A +L  +    F   E   +     +  + YE L
Sbjct: 128 IKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGDAYEFL 187

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L  
Sbjct: 188 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H       H I       GQEL   T+ +    M +  +  D       NIQ G TL
Sbjct: 240 AKKHF----DAHIIEDGFF--GQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 288

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            +  F   K F   +SNPP+   W    D            RF P   L   S     F+
Sbjct: 289 IEPHFLDDKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFV 343

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 344 LHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLAPNLFF 396

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +LS  KT+      Q I+A+ L+    N       ++++   QI+ ++ S+
Sbjct: 397 GTTIAVNILVLSKHKTDT---TTQFIDASGLFKKETN----NNTLSNEHIEQIVKVFASK 449

Query: 460 EN-GKFSRMLD 469
           EN   F++ +D
Sbjct: 450 ENVDHFAKSVD 460


>gi|146294000|ref|YP_001184424.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145565690|gb|ABP76625.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 523

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 36/278 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TP+ +V+   A+L DP              +YDP 
Sbjct: 164 ILGQVYEYFLGQFASAEGKKGGQFYTPQSIVNTLVAVL-DPHQG----------KVYDPC 212

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR +      D +
Sbjct: 213 CGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQESNPTTWRLAAMNLAIRGI------DFN 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              + G T +K+  +  R  Y L+NPPF    W     ++E +       R+  G P   
Sbjct: 264 LGREPGDTFTKNQHSDLRADYILANPPFNISDWWHG--SLEGDP------RWVYGNPPQG 315

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L P G  RA IVL++  + + +  + E +IRR +++ D++E +VA
Sbjct: 316 NANYAWLQHML--YHLKPTG--RAGIVLANGSMSSSQ--NTEGDIRRAMVDADVVEVMVA 369

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LFF T I   LW L+ +KT  R+G+V  I+A  L
Sbjct: 370 LPGQLFFNTQIPACLWFLTKQKT-ARKGEVLFIDARKL 406


>gi|309750368|gb|ADO80352.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae
           R2866]
          Length = 514

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 202/492 (41%), Gaps = 92/492 (18%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW+ A D+ G     DF + +L  TL  R         S     Y+  G  +I+
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLG-TLFYRF-------ISENFANYIEAGDESIN 60

Query: 69  LESF-------------VKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA- 111
                            +K  GY  Y +  +    +  GS  N   +L+       ++A 
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 112 --------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPD 152
                   K +F DFD +S   RL     +K   L  + K  + ++       H D   D
Sbjct: 121 GFPSEQDIKGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGD 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                 YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP
Sbjct: 179 A-----YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDP 225

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  L  A          H I       GQE+   T+ +    M +  +  D     
Sbjct: 226 AAGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF--- 276

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G+TL +  F   K F   +SNPP+  KW    D      +     RF P   L 
Sbjct: 277 --DIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLA 329

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H  + L    +G GRAAIV  S P    R+G+ E +IR++L++N+ ++A
Sbjct: 330 PKSKADFAFILHALSYL----SGKGRAAIV--SFPGIFYRSGA-EQKIRQYLVDNNYVDA 382

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++AL  +LFF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++  
Sbjct: 383 VIALAPNLFFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHI 435

Query: 450 RQILDIYVSREN 461
            QIL ++  +E+
Sbjct: 436 EQILKLFADKED 447


>gi|322372660|ref|ZP_08047196.1| type I restriction-modification system, M subunit [Streptococcus
           sp. C150]
 gi|321277702|gb|EFX54771.1| type I restriction-modification system, M subunit [Streptococcus
           sp. C150]
          Length = 534

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          T+YD T
Sbjct: 176 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDKQGFTIYDAT 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A         + + P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 230 MGSGSLLLNA-------KRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE-----N 277

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      ++    +     FG   PK 
Sbjct: 278 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGKLAPK- 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 333 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 439

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE+  KF+ +  + 
Sbjct: 440 ILNAYKSREDMDKFAHLASFE 460


>gi|262067382|ref|ZP_06026994.1| type I restriction-modification system, M subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378945|gb|EFE86463.1| type I restriction-modification system, M subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 520

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 44/318 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T L L             +  +YDP CG+G 
Sbjct: 185 YEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTL--------VGKTEVNKVYDPACGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 237 LLLKFAKILGKDNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 285

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 286 GDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQILIND-----SRFSPAGVLAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L   PNG   AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 341 LAFIMHSLSWL--APNG--TAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPD 393

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIINDDQRRQILD 454
           +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N  K   + IND     I++
Sbjct: 394 NLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNSNKMTEKHIND-----IVE 445

Query: 455 IYVSRENGKF-SRMLDYR 471
            +  RE+ ++ S ++DY 
Sbjct: 446 KFTKRESLEYISNLVDYE 463


>gi|289168442|ref|YP_003446711.1| type I restriction-modification system DNA methylase [Streptococcus
           mitis B6]
 gi|288908009|emb|CBJ22849.1| type I restriction-modification system DNA methylase [Streptococcus
           mitis B6]
          Length = 523

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 155/367 (42%), Gaps = 45/367 (12%)

Query: 109 DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIR 164
           D+ K +F++ D  S I      EK   L  I    + I        D     + YE LI 
Sbjct: 132 DDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAFGDAYEFLIS 191

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S   +   +F TP+ V  L   L++   D         I  +YDPTCG+G  L    
Sbjct: 192 NYASNAGKSGGEFFTPQTVSKLLARLVMVGKDK--------INKVYDPTCGSGSLLLQMK 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-S 283
               D    H +       GQE+    + +    M +  +  +     + +I++G TL +
Sbjct: 244 KQYED----HILEDGFF--GQEINMTNYNLARMNMFLHNINYN-----NFDIKRGDTLLN 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
                 K F   +SNPP+  KW  D D            RF P   L   S     F+MH
Sbjct: 293 PQHLEEKPFDAIVSNPPYSVKWVGDGDPTLINDD-----RFAPAGKLAPKSKADFAFIMH 347

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             N L    +  GRAAIV      + G A   E  IR++L++N+ +EA+++LP +LFF T
Sbjct: 348 SLNHL----SNKGRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVISLPDNLFFGT 400

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IAT + +L+  K E    K   I+A+  +    N      ++ D     I++++ + +N
Sbjct: 401 SIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNIEHIVELFSNYQN 453

Query: 462 GKFSRML 468
             +   L
Sbjct: 454 VDYKSAL 460


>gi|315445330|ref|YP_004078209.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315263633|gb|ADU00375.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 810

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 48/323 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++          S    +T+YD
Sbjct: 135 DDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVVG------ISASTKQDQTVYD 188

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L                P  +  +GQE +  T A+    M++   E      
Sbjct: 189 PTCGSGSLLLKVAAEA---------PRGITIYGQEKDNATWALSRMNMILHGNEV----- 234

Query: 272 LSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
              +I++G T++   FT     + F + ++NPPF  K W    + ++K++     GRF  
Sbjct: 235 --ADIRKGDTITSPQFTKNDQLRSFDFAVANPPFSVKSWS---NGLDKDY-----GRFEF 284

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   +G   FL+H+   L+      G+ A++L    LF G A   E+ IR  LL+   
Sbjct: 285 GKPPEKNGDYAFLLHVLKSLK----STGKGAVILPHGVLFRGGA---EARIRTELLKRGY 337

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I  I+ LP +LF+ T I   + +L       R G V +++A+        +G K R+ + 
Sbjct: 338 IRGIIGLPANLFYGTGIPACIVVLDKENAAGRTG-VFMVDAS---KGFIKDGNKNRLRSQ 393

Query: 447 DQRRQILDIYVSR-ENGKFSRML 468
           D  + ++D++  + E  ++SRM+
Sbjct: 394 DIHK-VVDVFNKQTEVDRYSRMV 415


>gi|218281999|ref|ZP_03488311.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989]
 gi|218216986|gb|EEC90524.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989]
          Length = 521

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 48/354 (13%)

Query: 114 IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F+D D +++    +  +++ L+ K+      I  H +     V+ + YE+LI +F +  
Sbjct: 140 LFDDMDLNASKLGKSEADRSALIAKVMLKIDDINFHYEDAEIDVLGDAYEYLIGQFAASA 199

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  L   L+              ++ +YDPTCG+G  L      VA  
Sbjct: 200 GKKAGEFYTPQQVSKLLAKLV--------TVGKSKLKNVYDPTCGSGSLLL----RVA-- 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFT 288
               K   ++  +GQE    T+ +    ML+  +   P      +I+   TL    +   
Sbjct: 246 ----KETDVVSFYGQEKVSTTYNLARMNMLLHGV---PFNHF--DIENNDTLEHPNEEHM 296

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             RF   ++NPP+  KW  D   ++ E        +G   PK S     F+ H+   L  
Sbjct: 297 KMRFDAVVANPPYSAKWSADPKFLDDER----FSAYGKLAPK-SKADYAFVQHMLYLL-- 349

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYL 407
             +  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I T +
Sbjct: 350 --DDAGTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGLPANLFFGTSIPTCV 404

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            +    KT +    +  I+A+  + S    GK +  + D   ++I+D Y++R++
Sbjct: 405 LVFKKCKTHD---DIFFIDASKEFES----GKNQNRLTDANIQKIMDTYLARKD 451


>gi|51893048|ref|YP_075739.1| type I restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856737|dbj|BAD40895.1| type I restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 537

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 139/303 (45%), Gaps = 41/303 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +    F TP  VV L  A+L     A +K        +YDP 
Sbjct: 177 VLGEVYEYFLGQFASAEGKKGGQFYTPASVVKLLVAIL-----APYKGK------VYDPC 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   +   G       I   +GQE  P T  +    + IR L      D +
Sbjct: 226 CGSGGMFVQAERFLESRGGRFGDLSI---YGQEANPTTWRLVAMNLTIRGL------DFN 276

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T  ++     R  Y L+NPPF    W  ++   +         R+  G P   
Sbjct: 277 LGKEPADTFHRNQHPDLRADYILANPPFNMSDWGGERLVDDP--------RWIYGTPPAG 328

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L P   G+A +VL++  + + +  + E EIR+ ++E D++E +VA
Sbjct: 329 NANFAWLQHIL--WHLAP--AGQAGVVLANGSMSSQQ--NNEGEIRKNMVEADVVEVMVA 382

Query: 393 LPTDLFFRTNIATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           LP  LFF T I   LW L   KT+   +RRG+V  I+A  +    R E +  R+++D++ 
Sbjct: 383 LPPQLFFNTQIPACLWFLCKDKTKNGRDRRGEVLFIDARKMG---RMETRVNRVLDDEEI 439

Query: 450 RQI 452
            +I
Sbjct: 440 AKI 442


>gi|210611279|ref|ZP_03288834.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787]
 gi|210152043|gb|EEA83050.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787]
          Length = 500

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 44/327 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ + +F  +  + A +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIQMIDHGNSKDILGRTYEYCLAKFAEQEGKLAGEFYTPSCVVRTLVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   + + G + K   +   +GQ+  P T 
Sbjct: 190 ---------QPYNGR-VYDPCCGSGGMFVQSSKFIENHGGNIKNISV---YGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK-- 309
            +    + IR +E+D    L K      T   D     +  + ++NPPF    W +DK  
Sbjct: 237 KLAQMNLAIRGIEAD----LGKF--SADTFFNDCHPQLKADFIMANPPFNLSGWGQDKLL 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G P  ++ +  +L H+     L PNG  R  +VL++  L    
Sbjct: 291 DDV----------RWQYGTPPANNANFAWLQHMI--WHLAPNG--RIGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE EIR+ ++  DL++ IVA+P+ LF+ T I   LW L+  K ++++GK   I+A  
Sbjct: 335 QSGGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLA--KNKKQKGKTLFIDARK 392

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIY 456
           L T +    +K R + D   ++I D Y
Sbjct: 393 LGTMVT---RKLRELTDVDIQRIADTY 416


>gi|297582533|ref|YP_003698313.1| type I restriction-modification system, M subunit [Bacillus
           selenitireducens MLS10]
 gi|297140990|gb|ADH97747.1| type I restriction-modification system, M subunit [Bacillus
           selenitireducens MLS10]
          Length = 531

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F SE  + A +F TP  V  + + ++     A+ +E      +++DPT
Sbjct: 173 VIGDAYEYLIGQFASEAGKKAGEFYTPHMVSDMMSQIV-----AIGQEDKKWF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++     +H  P  +  HGQEL   T  +    +++  ++ +  R   
Sbjct: 227 MGSGSLMLNVRNYL-----NH--PDKVKYHGQELNTTTFNLAKMNLILHGVDPEEMR--- 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             ++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G   PK 
Sbjct: 277 --VRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADDTFLD----DSRFNRYGKLAPK- 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 330 SKADFAFVLHGYYHLK----ETGTMAIVLPHGILFRGAA---EGTIRQKLLEDGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +P +LFF T+I T + IL  NR T +    V  I+A+  +   +N+ K    ++ +   
Sbjct: 383 GMPPNLFFGTSIPTTVLILKKNRSTRD----VLFIDASRDFIKGKNQNK----LSKENIE 434

Query: 451 QILDIYVSREN 461
           +++D Y  RE+
Sbjct: 435 KVVDTYNKRES 445


>gi|270293232|ref|ZP_06199443.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
 gi|270279211|gb|EFA25057.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
          Length = 533

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          T+YD T
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDQQGFTIYDAT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      +     +     FG   P+ 
Sbjct: 277 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFM----ADPRFSPFGKLAPQ- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDVHIEK 438

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE   KF+ +  Y 
Sbjct: 439 ILEAYKSREEIDKFAHLASYE 459


>gi|291543145|emb|CBL16255.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus bromii L2-63]
          Length = 562

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 41/273 (15%)

Query: 146 HPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           H +   DR ++  +YE+ ++ F    ++   +F TP DVV L  A +++P +        
Sbjct: 159 HKEFGKDRDLIGYVYEYFLKEFAVNATKEEGEFYTPHDVVQL-IATMIEPYNG------- 210

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              TLYDP CG+GG    +   V        +  I V +GQE EP T+ +    + +R  
Sbjct: 211 ---TLYDPCCGSGGMFVQSAALVK--SKQGNLNSINV-YGQEKEPATYRLAKMNLALR-- 262

Query: 265 ESDPRRDLSKNI--QQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL 321
                  +S N+  +  S+ + DL  G RF+Y ++NPPF  K W  D   ++ + +  + 
Sbjct: 263 ------GISHNLGSEADSSFTHDLHEGLRFNYIMANPPFNLKGWYNDN--LKNDPRWADY 314

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                  P  S+ +  +++H+ + L+      G A  +L++  L +    S   +IR+ L
Sbjct: 315 A-----TPPESNANYAWILHILSHLK----ADGVAGFLLANGALND----SDTLDIRQKL 361

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +END +EAIV LP +LF  T+I+  LWIL+  K
Sbjct: 362 IENDRVEAIVVLPRELFITTDISVTLWILNRNK 394


>gi|116329325|ref|YP_799045.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116122069|gb|ABJ80112.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 513

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 199/486 (40%), Gaps = 84/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A+L   IW+ A D+ G     DF + +L  TL  R         S     Y+  G S+ID
Sbjct: 8   AALQRQIWQIANDVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTNYMEGGDSSID 59

Query: 69  LESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
                            +K  GY  Y  S+   + +   +   +L + +A+         
Sbjct: 60  YAKLPDKRITREIKDDAIKTRGYFIY-PSQLFANVVSKADDNESLNTDLAAIFKAIETSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156
                  + K +F DFD +S   RL     +K   L  + K  + ++    D+    +  
Sbjct: 119 NGFPSEHDIKGLFADFDTTSN--RLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L      A+ K++   I  +YDP CG+
Sbjct: 177 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQL------AIHKQT--RINKIYDPACGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A     D    H I       GQE+   T+ +    M +  +  D       +I
Sbjct: 229 GSLLLQAKKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DI 277

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           + G+TL       ++ F   +SNPP+   W+   D      +     RF P   L   S 
Sbjct: 278 ELGNTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLDPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L
Sbjct: 333 ADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D    QI+
Sbjct: 386 APNLFFGTTIAVNILVLSKHKTDTN---TQFIDASGLFKKETN----TNILTDKHIEQIM 438

Query: 454 DIYVSR 459
             + S+
Sbjct: 439 QTFDSK 444


>gi|261839335|gb|ACX99100.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 52]
          Length = 529

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 203/483 (42%), Gaps = 77/483 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID- 68
           L N IWK A +L G     DF + +L     R + E          RE+   F  + +  
Sbjct: 19  LHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERERDPNFDYALLSD 78

Query: 69  ------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SD 109
                  E  ++  G+ F   S    + L +  T ++L   + +               +
Sbjct: 79  EEAEDAKEGLIEEKGF-FIPPSALFCNVLKNARTNDDLNVTLQNIFNEIEKSSLGFKSEE 137

Query: 110 NAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE+
Sbjct: 138 NVKGLFADLDVNSNKLGSSHKNRVEK---LNKILEAIGGMQLGDYQKSGID-VFGDAYEY 193

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L 
Sbjct: 194 LMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLL 245

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
                + D              GQE+   T+ +C   M +  +      + SK +I  G 
Sbjct: 246 QFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGD 293

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL          F   +SNPP+  KW  D + +    +     RF P   L   +   + 
Sbjct: 294 TLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPILINDE-----RFSPAGVLAPKNAADLA 348

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +L
Sbjct: 349 FTMHMLSYL----SNSGTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIALPDNL 401

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y 
Sbjct: 402 FFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILKTYT 454

Query: 458 SRE 460
            R+
Sbjct: 455 ERK 457


>gi|298292626|ref|YP_003694565.1| type I restriction-modification system, M subunit [Starkeya novella
           DSM 506]
 gi|296929137|gb|ADH89946.1| type I restriction-modification system, M subunit [Starkeya novella
           DSM 506]
          Length = 505

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 47/358 (13%)

Query: 112 KAIFEDFDFSS--TIARL-EKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F + DF+S   + R+ ++   L  + ++F+   ++L P  V + ++   Y +LI RF
Sbjct: 114 EGVFRNIDFNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  + A +F TP  V  L   L           +P    T+ DP CG+G  L  A   
Sbjct: 174 ASDAGKKAGEFYTPSAVSRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEE 223

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   GS +        +GQE+   T A+    M +   ++  R +    +   + +  D 
Sbjct: 224 V---GSEN-----FALYGQEVNGATWALARMNMFLHAKDA-ARIEWCDTLNSPALVEGDH 274

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               +F   ++NPPF   KW  +    +      +  R+  G+P  S G   F+ H+   
Sbjct: 275 LM--KFDVVVANPPFSLDKWGAESADTD------QFKRYWRGIPPKSKGDYGFITHM--- 323

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +E+     GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I  
Sbjct: 324 IEIAKRLSGRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPV 380

Query: 406 YLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            + +    + +    E R  V  I+A   +T     GK + ++++    ++L+ Y +R
Sbjct: 381 AILVFDRSREQGGVNEDRRDVLFIDAGKEFTP----GKTQNVMDEAHISKVLETYAAR 434


>gi|257889088|ref|ZP_05668741.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,141,733]
 gi|257825160|gb|EEV52074.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,141,733]
          Length = 512

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 152/312 (48%), Gaps = 43/312 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDP 212
           V+ + YE LI +F SE  + A +F TP  V  + A  + LD  +  F        +++DP
Sbjct: 154 VIGDAYEFLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKERRF-------FSVFDP 206

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  + +  N++    +       +  HGQEL   T+ +    +++  ++++     
Sbjct: 207 TMGSGSLMLNVRNYLTHTDN-------VKYHGQELNTTTYNLAKMNLILHGVDAE----- 254

Query: 273 SKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             N++ G TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK
Sbjct: 255 EMNLRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK 310

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A+
Sbjct: 311 -SKADFAFLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAV 362

Query: 391 VALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + +P +LFF T+I T + +L  NR+T +    +  I+A+  +   +N+ K    ++++  
Sbjct: 363 IGMPANLFFGTSIPTTVIVLKKNRQTRD----ILFIDASREFVKGKNQNK----LSEENI 414

Query: 450 RQILDIYVSREN 461
           ++IL+ Y  R++
Sbjct: 415 QKILETYAERKD 426


>gi|71065437|ref|YP_264164.1| putative type I restriction-modification system, M subunit
           [Psychrobacter arcticus 273-4]
 gi|71038422|gb|AAZ18730.1| putative type I restriction-modification system, M subunit
           [Psychrobacter arcticus 273-4]
          Length = 529

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 179/413 (43%), Gaps = 58/413 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GSNIDLESFV 73
           +W  A  L G  + +++  ++L    L+ +    E  R    +K +  G   +ID+    
Sbjct: 21  LWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQR----QKLIDTGYEKHIDM---- 72

Query: 74  KVAGYS----FYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122
            V  Y+    FY  +E   S +     + ++        S I   + + K    D  FS 
Sbjct: 73  -VQAYTKDNVFYLPAESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSR 131

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L  +  N   I  +P+   +  +  +YE+ + +F +   +G  +F TP+ 
Sbjct: 132 LGLTASKLAALIDVVNNIDTIG-NPE---EDTVGRVYEYFLGKFAATEGKGGGEFYTPKS 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV+L  A +++P              +YDP CG+GG    ++  +    SHH     +  
Sbjct: 188 VVNL-IAEMVEPYQG----------KIYDPCCGSGGMFVQSIKFIE---SHHGNTKDVSI 233

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +    + IR + S+   D++ +     T  KD     +  + ++NPPF 
Sbjct: 234 YGQEYTSTTYKLAKMNLAIRGISSN-LGDVAAD-----TFFKDQHEDLKADFIMANPPFN 287

Query: 303 KK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           +K W    + V+           G   P   + +  +++H+ +KL    +  G A  VL+
Sbjct: 288 QKDWRASDELVDDPR------WAGYPTPPTGNANYAWILHMISKL----SEHGTAGFVLA 337

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +  +      SGE EIR+ ++ENDL++ ++ALP  LF+ T I   LW ++  K
Sbjct: 338 NGSM--STTTSGEGEIRQQIIENDLVDCMIALPGQLFYTTQIPVCLWFINKDK 388


>gi|220908526|ref|YP_002483837.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
 gi|219865137|gb|ACL45476.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
          Length = 540

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 60/330 (18%)

Query: 143 IELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           +E  P   P R   ++  +YE+ + +F     +    F TP  VV +   +L        
Sbjct: 165 LETEPIAEPRRQQDLLGQVYEYFLGQFALAEGKKGGQFYTPESVVKVLVEML-------- 216

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVA 257
              P   R ++DP CG+GG    +   V    SHH  ++  I + +GQE    T+ +C  
Sbjct: 217 --EPYKGR-VFDPCCGSGGMFVQSEKFV----SHHQGRLNDISI-YGQESNETTYKLCRM 268

Query: 258 GMLIRRLESDPRRDLSKNIQ---QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            + IR ++         NI+   +GS L KD     +  + ++NPPF      D D    
Sbjct: 269 NLAIRGIDG-------SNIRWNPEGSFL-KDAHKDLKADFVIANPPF-----NDSDW--- 312

Query: 315 EHKNGEL----GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               G+L    GR+  G+P + + +  ++ H    L L     G A  VLS+  L +   
Sbjct: 313 ---GGDLLRQDGRWQYGVPPVGNANFAWVQHFLYHLALT----GAAGFVLSNGSLSSNT- 364

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS----NRKTEERRGKVQLIN 426
            SGE EIR+ L++ DL++ IV LPT LF+ T I   LW LS      K  +R+G+V  I+
Sbjct: 365 -SGEGEIRKALVQADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRDRKGEVLFID 423

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           A++L   +    ++ R   ++  ++I   Y
Sbjct: 424 ASELGYMVN---RRNRAFAEEDIQKIAGTY 450


>gi|116330071|ref|YP_799789.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116123760|gb|ABJ75031.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 199/486 (40%), Gaps = 84/486 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A+L   IW+ A D+ G     DF + +L  TL  R         S     Y+  G S+ID
Sbjct: 8   AALQRQIWQIANDVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTNYMEGGDSSID 59

Query: 69  LESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
                            +K  GY  Y  S+   + +   +   +L + +A+         
Sbjct: 60  YAKLPDKRITREIKDDAIKTRGYFIY-PSQLFANVVSKADDNESLNTDLAAIFKAIETSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156
                  + K +F DFD +S   RL     +K   L  + K  + ++    D+    +  
Sbjct: 119 NGFPSEHDIKGLFADFDTTSN--RLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L      A+ K++   I  +YDP CG+
Sbjct: 177 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQL------AIHKQT--RINKIYDPACGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A     D    H I       GQE+   T+ +    M +  +  D       +I
Sbjct: 229 GSLLLQAKKQFDD----HIIEEGF--SGQEINHTTYNLARMNMFLHNINYDKF-----DI 277

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           + G+TL       ++ F   +SNPP+   W+   D      +     RF P   L   S 
Sbjct: 278 ELGNTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLDPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L
Sbjct: 333 ADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D    QI+
Sbjct: 386 APNLFFGTTIAVNILVLSKHKTDTN---TQFIDASGLFKKETN----TNILTDKHIEQIM 438

Query: 454 DIYVSR 459
             + S+
Sbjct: 439 QTFDSK 444


>gi|328676719|gb|AEB27589.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida Fx1]
          Length = 522

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 186/430 (43%), Gaps = 58/430 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +  S+   +W +A  L G  + +++  ++L    L+ +    E  R    E+ +A G  
Sbjct: 8   ANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERR----EQLIAEGKE 63

Query: 66  N-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFED 117
             ID+  F  +    FY   E   S +     ++++        S I   + + K    D
Sbjct: 64  AFIDMVEFYTMENV-FYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPD 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     + K   L     N + I    + +  RV    YE+ + +F     +G  +F
Sbjct: 123 NYFSRLGLDVSKLSSLIDTINNINTIADKGNDIVGRV----YEYFLSKFAIAEGKGKGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V+L  A +++P              +YDP CG+GG    ++  +     + K  
Sbjct: 179 YTPKSIVNL-IANMIEPYKG----------KIYDPACGSGGMFVQSIKFIEAHKGNKKDI 227

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYC 295
            I   +GQE    T+ +    + IR         +S N+      T  KD     +  + 
Sbjct: 228 SI---YGQEYTGTTYKLAKMNLAIR--------GISANLGDVPADTFFKDQHPDLKADFI 276

Query: 296 LSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF +K W    + ++           G  +P  S+ +  +++++ +KL    +  G
Sbjct: 277 MANPPFNQKDWRGANELLDDPR------WAGYDVPPKSNANYGWILNIVSKL----SQNG 326

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L++  L     G  E +IR+ L+ENDL+EAI+ LP ++F+ TNI+  +WIL+  K
Sbjct: 327 VAGFILANGAL---SGGGEEYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWILNANK 383

Query: 415 TE---ERRGK 421
            +   E+ GK
Sbjct: 384 KQREFEQNGK 393


>gi|260579046|ref|ZP_05846945.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|300933495|ref|ZP_07148751.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
 gi|258602797|gb|EEW16075.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 242

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 12/199 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + ++  A  L G ++   +  VI+P T++RRLECALE T+ AV   Y     +   +  
Sbjct: 10  VDHVFSIANSLRGTYQADKYKDVIIPMTIIRRLECALEETKDAVCTVYEQDDSTPDAI-- 67

Query: 72  FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF---EDFDFSSTIAR 126
             +V+GY FYNTS Y+L  L +       NL++Y+ +FS N + I    E  DF + I +
Sbjct: 68  LKQVSGYPFYNTSRYTLEKLLAEPAQLHRNLKTYLEAFSPNIRMILDKNEGLDFFTQIDK 127

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + K   L  + + FS ++L P+ + +  M  ++E LIRRF      G  D  TPR+VV L
Sbjct: 128 MHKGSRLTGVVRKFSELDLAPERINNVAMGYMFEELIRRFSENAEAG--DHYTPREVVRL 185

Query: 187 ATAL-LLDPDDALFKESPG 204
              L L +  + LF+  PG
Sbjct: 186 LVRLGLAEGSEDLFE--PG 202


>gi|312886110|ref|ZP_07745731.1| type I restriction-modification system, M subunit [Mucilaginibacter
           paludis DSM 18603]
 gi|311301409|gb|EFQ78457.1| type I restriction-modification system, M subunit [Mucilaginibacter
           paludis DSM 18603]
          Length = 519

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 51/351 (14%)

Query: 107 FSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEH 161
           +S++   IF++ DF+S+      +K   L  +  +F+   + L P  +    ++   Y  
Sbjct: 113 YSEDGAGIFQNIDFNSSKLGEPKDKNTRLKHLLLDFNKDALNLRPSHLDGVDIIGGAYMF 172

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F S+  + A +F TP++V  L   L         K  PG    + DPTCG+   L 
Sbjct: 173 LIENFASDAGKKAGEFFTPKEVSTLIAKLT--------KSKPG--SRICDPTCGSASLLI 222

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKN--IQ 277
            A   V   GS +        +GQE    T A+ V  M +   ++   R  D  +N  ++
Sbjct: 223 KAGEEV---GSDN-----FSLYGQEANGSTWALAVMNMFLHGFDNATIRWGDTIRNPKLK 274

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFG-KKW------EKDKDAVEKEHKNGELGRFGPGLPK 330
           +G  L K       F   ++NPPF   KW      E DK  V  + +  +  RF  G+P 
Sbjct: 275 EGDMLMK-------FDTVVANPPFSLDKWGKVEDKEGDKTTVSYDPETDKYNRFWRGVPP 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S G   F+ H+   L    N  GRA +V+    LF     S E  IR+  +E +L+EA+
Sbjct: 328 KSKGDWAFISHMIETL----NEHGRAGVVVPHGVLFRS---SSEGRIRQRTIEENLLEAV 380

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           + LP +LFF T I   + I + +K+         I+A+  + + +N+ + R
Sbjct: 381 IGLPANLFFGTGIPAAILIFNKQKSS---NNFLFIDASKQYKNAKNQNRLR 428


>gi|268609820|ref|ZP_06143547.1| type I restriction-modification system methyltransferase subunit
           like protein [Ruminococcus flavefaciens FD-1]
          Length = 452

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 39/274 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ ++ + +  ++   +F TP  VV L  A +++P   +          +YDP 
Sbjct: 79  LIGRVYEYFLQVYAASGTKEDGEFYTPACVVKL-IAEMIEPYSGV----------VYDPC 127

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+GG    ++  V    G+  K+  I    GQE  P+T  +C   + IR         +
Sbjct: 128 CGSGGMFVQSLKFVDRHNGNRQKVSII----GQESNPDTWRLCKMNLAIR--------GI 175

Query: 273 SKNI--QQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG-L 328
           + N+     ST + DL   K   Y ++NPPF  K W  + + V     +    R G   +
Sbjct: 176 AHNLGDTNASTFTNDLHKDKTVDYIMANPPFNLKGWRAEDELV----NDSRFMRAGYSVM 231

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P +++ +  +++H+ +KL++     G A  +L++  L    A   E  +R+ +LE D +E
Sbjct: 232 PPVANANYAWILHMLSKLDV---NHGVAGFLLANGAL---NASDAEGTLRKEILERDRVE 285

Query: 389 AIVALPTDLFFRTNIATYLWILS-NRKTEERRGK 421
           AI+ LP D+F+ T+I+  LWI++ N+K     G+
Sbjct: 286 AIIVLPRDMFYTTDISVTLWIVNMNKKACTVNGR 319


>gi|167631092|ref|YP_001681591.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593832|gb|ABZ85580.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 486

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 149/316 (47%), Gaps = 48/316 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +FGS  SEG  +F TP  +V L   ++           P   R +YDP 
Sbjct: 135 VLGRVYEYFLGKFGS--SEG--EFYTPPSIVKLLVEMI----------EPYKGR-IYDPC 179

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDL 272
           CG+GG    +   V +   H      +  +GQE    T  +C   + IR ++++   RD 
Sbjct: 180 CGSGGMFVQSQRFVEE---HQGRRDDIHVYGQEYTATTWRLCKMNLSIRGIDANLGERD- 235

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                   T + DL    R  Y L+NPPF  K W  ++ A +         R+  GLP  
Sbjct: 236 ------DDTFANDLHKSLRADYILANPPFNIKDWGANRLAND--------ARWKYGLPPA 281

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++ +  ++ H+ +KL    +  G A  V+++  +      S ESEIR+ ++E  L++ IV
Sbjct: 282 NNANYAWIQHIISKL----SPSGVAGFVMANGSMLTNT--SNESEIRKNIIEAKLVDCIV 335

Query: 392 ALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            +P++LF+   I   LW LS  K      +R  ++  I+A  +      E +K R+++++
Sbjct: 336 TMPSNLFYTVTIPVCLWFLSKNKMPKGLRDRSDEILFIDARKMGYM---EDRKHRVLSEE 392

Query: 448 QRRQILDIYVSRENGK 463
             ++I   Y + + G+
Sbjct: 393 DIQRIAQTYRNWKKGE 408


>gi|146321640|ref|YP_001201351.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 98HAH33]
 gi|253752459|ref|YP_003025600.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|253754285|ref|YP_003027426.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|145692446|gb|ABP92951.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 98HAH33]
 gi|251816748|emb|CAZ52390.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|251820531|emb|CAR47286.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|292559063|gb|ADE32064.1| Type I restriction-modification system M subunit [Streptococcus
           suis GZ1]
 gi|319758863|gb|ADV70805.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis JS14]
          Length = 529

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 211/498 (42%), Gaps = 90/498 (18%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPTRSAVREK 58
           ++ N IW  A +L G+   +++   IL F   R L           E         V++ 
Sbjct: 7   AITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPGETVQDA 66

Query: 59  YL--AFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDNA- 111
           Y   A G   ++ LE+     GY+      ++       N+    ++ ++    F+ N  
Sbjct: 67  YAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDHFNANVE 126

Query: 112 ---------KAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    + +F D +       +ST+ R   A  L  I K    IE   D   D ++ 
Sbjct: 127 LNRDAMEDFRGVFNDINLGDSRLGNSTVVR---AKSLNSIVKLIDSIEYKNDEGKD-ILG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPT 213
            IYE+LI +F +   +   +F TP  V  +   ++   L+  D  F        ++YDPT
Sbjct: 183 EIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLEKSDTSF--------SVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +   G H K       +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-GQHIKF------YGQEMNTTTYNLARMNLMMHQVGYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + ++A++ LP +LF+ T I T + +   NR+T++    V  I+A+  +     +GK +  
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNRQTKD----VFFIDASKEF----EKGKNQNH 442

Query: 444 INDDQRRQILDIYVSREN 461
           ++DD   +I++ Y +R++
Sbjct: 443 LSDDMVEKIVETYHNRQS 460


>gi|21232333|ref|NP_638250.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767534|ref|YP_242296.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990647|ref|YP_001902657.1| type I site-specific DNA-methyltransferase catalytic subunit
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21114104|gb|AAM42174.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572866|gb|AAY48276.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732407|emb|CAP50601.1| type I site-specific DNA-methyltransferase catalytic subunit
           [Xanthomonas campestris pv. campestris]
          Length = 502

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 163/356 (45%), Gaps = 42/356 (11%)

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRF 166
           + +F+D  F++       +K  LL  + ++F+   + L P  +    ++ N YE+LI+ F
Sbjct: 115 RDVFQDISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNF 174

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   + A +F TP +V  L  A L+DP              + DPTCG+G  L      
Sbjct: 175 ASSSGKKAGEFYTPPEVSAL-MARLMDPQQG---------DEICDPTCGSGSLLLKCGRL 224

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +     K       +GQE    T A+    M +   E + R +    I+    L+ + 
Sbjct: 225 IRERTGSGK----YALYGQEAIGSTWALAKMNMFLHG-EDNHRIEWGDTIRNPKLLAGNH 279

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              K F   ++NPPF  +KW  D    +         RF  GLP  + G   F++H+   
Sbjct: 280 L--KHFDIVVANPPFSLEKWGHDSADTDPH------DRFRRGLPPRTKGDYAFILHMIAT 331

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++  P  G R A+V+    LF G A   E  IR+ L+E +L++ ++ LP  LF+ T I  
Sbjct: 332 MK--PRTG-RMAVVVPHGVLFRGAA---EGRIRQKLIEENLLDVVIGLPEKLFYGTGIPA 385

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            + +   +K ++   KV  I+A+  +     +GK + ++ +   ++ILD   +R+N
Sbjct: 386 AVLVFRTKKKDK---KVLFIDASRQY----QDGKNQNLLRESDLQRILDTVQARQN 434


>gi|320528569|ref|ZP_08029726.1| type I restriction-modification system, M subunit [Solobacterium
           moorei F0204]
 gi|320131155|gb|EFW23728.1| type I restriction-modification system, M subunit [Solobacterium
           moorei F0204]
          Length = 521

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 162/354 (45%), Gaps = 48/354 (13%)

Query: 114 IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F+D D +++    +  +++ L+ K+      I  H +     V+ + YE+LI +F +  
Sbjct: 140 LFDDMDLNASKLGKSEADRSVLIAKVMLKIDDINFHYEDAEIDVLGDAYEYLIGQFAASA 199

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  L   L+              ++ +YDPTCG+G  L      VA  
Sbjct: 200 GKKAGEFYTPQQVSKLLAKLV--------TVGKSKLKNVYDPTCGSGSLLL----RVA-- 245

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFT 288
               K   ++  +GQE    T+ +    ML+  +   P      +I+   TL    +   
Sbjct: 246 ----KETDVVSFYGQEKVSTTYNLARMNMLLHGV---PFNHF--DIENNDTLEHPNEEHM 296

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             RF   ++NPP+  KW  D   ++ E        +G   PK S     F+ H+   L  
Sbjct: 297 KMRFDAVVANPPYSAKWSADPKFLDDER----FSAYGKLAPK-SKADYAFIQHMLYLL-- 349

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYL 407
             +  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +LFF T+I T +
Sbjct: 350 --DDAGTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGLPANLFFGTSIPTCV 404

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            +    KT +    V  I+A+  + S    GK +  + D   ++I+D Y++R++
Sbjct: 405 LVFKKCKTHD---DVFFIDASKEFES----GKNQNRLTDANIQKIMDTYLARKD 451


>gi|308270339|emb|CBX26951.1| hypothetical protein N47_A09800 [uncultured Desulfobacterium sp.]
          Length = 910

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 139/303 (45%), Gaps = 45/303 (14%)

Query: 133 LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           L    +NF  I L  +    PD ++   YE LI+ F     + A +F TP +VV +   +
Sbjct: 164 LADFIQNFEKIPLKDEDFEFPD-LLGAAYEWLIKYFADSAGKKAGEFYTPVEVVRVCVEI 222

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
             DP + +         ++YDPT G+GG L    +++ +CG     P  L  +GQE    
Sbjct: 223 C-DPQEGM---------SIYDPTAGSGGMLIQTRDYLQECGGD---PGELSLNGQEKIGT 269

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKW 305
           T ++C   ML+  +          +I+Q  T+ + L        KRF   L+NPPF + +
Sbjct: 270 TWSICKMNMLLHGISH-------ADIRQADTIREPLHLDETNELKRFDRVLANPPFSQNY 322

Query: 306 EKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                 ++KE K    GRF   +P K     ++F+ H+ + L+      GR A V+    
Sbjct: 323 ------IKKELKFP--GRFPVMMPEKGKKADLMFVQHMLSVLK----HDGRLATVMPHGV 370

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G     E   RR+ +E   +EAI+ LP++LF+ T I   + ++ N+     R  V  
Sbjct: 371 LFRG---GEERAARRYFIEKGYLEAIIGLPSNLFYGTGIPACIMVM-NKHGAASRDHVLF 426

Query: 425 INA 427
           IN 
Sbjct: 427 ING 429


>gi|262039562|ref|ZP_06012861.1| type I restriction-modification system, M subunit [Leptotrichia
           goodfellowii F0264]
 gi|261746440|gb|EEY33980.1| type I restriction-modification system, M subunit [Leptotrichia
           goodfellowii F0264]
          Length = 526

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 167/375 (44%), Gaps = 58/375 (15%)

Query: 109 DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
           ++ K +FED D +S     T+A  EK   L  I    S I        D     + YE+L
Sbjct: 137 NDIKGLFEDVDTTSNRLGGTVA--EKNKRLTDILTGISEINFGKFEENDIDAFGDAYEYL 194

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + S   +   +F TP+ V  L   L++        E    I  +YDPTCG+G  L  
Sbjct: 195 ISNYASNAGKSGGEFFTPQTVSKLLARLVM--------EGKTSINKVYDPTCGSGSLLLQ 246

Query: 223 AMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                  H+ D G            GQE+      +    M +  +  +     + +I++
Sbjct: 247 MKKQFEEHIIDEGFF----------GQEINMTNFNLARMNMFLHNINYN-----NFSIKR 291

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL   L + ++ F   +SNPP+  KW  D D       N E  RF P   L   S   
Sbjct: 292 GDTLLNPLHSEEKPFDAIVSNPPYSIKWIGDGDPT---LINDE--RFAPAGKLAPKSYAD 346

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N+ I+ ++ LP 
Sbjct: 347 YAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-EQTIRKYLVDNNFIDCVIQLPE 399

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IAT + +++  KTE    KV  I+A+  +    N      I+ +     I++ 
Sbjct: 400 NLFFGTSIATCILVMAKNKTE---NKVLFIDASKEFKKETN----NNILEEKNIENIVEE 452

Query: 456 YVSRENGK-FSRMLD 469
           + +R + + FSR +D
Sbjct: 453 FKNRSDKEYFSRYVD 467


>gi|210623094|ref|ZP_03293581.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275]
 gi|210153897|gb|EEA84903.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275]
          Length = 522

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 165/371 (44%), Gaps = 56/371 (15%)

Query: 113 AIFEDFD-----FSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLI 163
            +F+DFD       ST+A+  +     K+CK   GI +++   V +       + YE+L+
Sbjct: 137 GLFDDFDVNNNKLGSTVAKRNE-----KLCKLLDGIADMNLGYVKNHDIDAFGDAYEYLM 191

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP DV  L T L               I  +YDP CG+G  L  A
Sbjct: 192 TMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGSGSLLLKA 243

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +       KI      +GQE+   T+ +C   M +  +  D       NI    TL+
Sbjct: 244 EKLLG----KDKIRNGF--YGQEINITTYNLCRINMFLHDIGFDKF-----NIACEDTLT 292

Query: 284 KDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
               +  + F   +SNPP+  KW  + + +          RF P   L   S   + F+M
Sbjct: 293 APAHWDDEPFELIVSNPPYSIKWAGNDNPLLINDP-----RFAPAGVLAPKSKADLAFIM 347

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L   PNG   AAIV     ++ G A   E +IR++L++N+ ++ I+ LP++LFF 
Sbjct: 348 HSLSWL--APNG--TAAIVCFPGIMYRGGA---EQKIRKYLIDNNFVDCIIQLPSNLFFG 400

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +L   K++ R      I+AT+ +    N       +  +   +I+D + +R 
Sbjct: 401 TSIATCIMVLKKNKSDNR---TLFIDATNEFVKATNNNH----MTQENMDKIVDCFANRN 453

Query: 461 NGK-FSRMLDY 470
             K FS +  Y
Sbjct: 454 EVKHFSHLATY 464


>gi|253576200|ref|ZP_04853531.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251844327|gb|EES72344.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 507

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 42/308 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +   +F TP  VV L   ++           P   R +YDP 
Sbjct: 149 VLGRVYEYFLSKFASAEGKNGGEFYTPNSVVRLLVEMI----------QPFKGR-VYDPC 197

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     +I  I V +GQE  P T  +C   + IR +      D +
Sbjct: 198 CGSGGMFVQSEKFVEE--HQGRIGDIAV-YGQESNPTTWKLCKMNLAIRGI------DGN 248

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T   DL    +  Y L+NPPF    W  ++   +         R+  G+P   
Sbjct: 249 LGEHHADTFHNDLHKNLKADYILANPPFNISDWGGERLTDDT--------RWTYGVPPAG 300

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ NKL   P+G   A  VL++  +    + + E EIR  L+  DL++ IV 
Sbjct: 301 NANYAWIQHIVNKL--APSG--VAGFVLANGSM--STSTTAEFEIRSKLVNADLVDCIVT 354

Query: 393 LPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF+ T I   LW ++  K      +RRG++  I+A  +   +    +  R ++ + 
Sbjct: 355 LPGQLFYSTQIPVCLWFIAKNKAPKGFRDRRGEILFIDARKMGHMV---DRTHRELSTED 411

Query: 449 RRQILDIY 456
            R+I D Y
Sbjct: 412 IRKIADTY 419


>gi|229542810|ref|ZP_04431870.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229327230|gb|EEN92905.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 509

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 58/368 (15%)

Query: 112 KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFG 167
           + +F + DF+S        E+  +L  + ++F+ + L P  + +  ++ N Y+++I  F 
Sbjct: 114 RGVFRNIDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFA 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  +   +F TP +V  L   L+           P     +YDPTCG+G  L      V
Sbjct: 174 SDAGKKGGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQV 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                       +  +GQE    TH++ +  M +  ++          I+ G TL+  L 
Sbjct: 224 PSKK--------VAIYGQERNGATHSLALMNMYLHGIDD-------AKIEWGDTLANPLH 268

Query: 288 --TGK--RFHYCLSNPPFG-KKW------EKDKDAVEK-EHKNGELGRFGPGLPKISDGS 335
              GK  +F   ++NPPF   KW      E + D   K E       RF  G+P  S G 
Sbjct: 269 LEDGKLMKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGD 328

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+ H+   L       GR A +L    LF G   + E++IR+ ++E +L++A++ LP 
Sbjct: 329 YAFVQHMLYSLA----ENGRMATILPHGVLFRG---ASEAKIRKQIIELNLLDAVIGLPE 381

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKR-----RIINDDQ 448
            LF+ T I   + +    +T   R  V  I+A+  + +   +N+ K R     +I+   +
Sbjct: 382 GLFYGTGIPACIMVFRKDRT---RKDVLFIDASGEEHYEKGKNQNKLREQDIEKIVETYE 438

Query: 449 RRQILDIY 456
           +R+ +D Y
Sbjct: 439 KRETIDKY 446


>gi|261367888|ref|ZP_05980771.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
 gi|282570699|gb|EFB76234.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
          Length = 500

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 153/335 (45%), Gaps = 44/335 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ + +F  +  + A +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIQMMEHGDSKDILGRTYEYCLSKFAEQEGKLAGEFYTPSCVVRTLVEIL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   + + G +  I  I V  GQ+  P T 
Sbjct: 190 ---------QPYNGR-VYDPCCGSGGMFVQSAKFIENHGGN--INKISV-FGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK-- 309
            +    + IR +E+D    L K      T   D     +  + ++NPPF    W ++K  
Sbjct: 237 KMAQMNLAIRGIEAD----LGKF--NADTFFNDCHPQLKADFIMANPPFNLSDWGQEKLL 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G P   + +  ++ H+     L PNG  R  +VL++  L    
Sbjct: 291 DDV----------RWQYGTPPAGNANFAWMQHMI--WHLAPNG--RIGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE EIR+ ++  DL++ IVA+P+ LF+ T I   LW L+  K ++++GK   I+A  
Sbjct: 335 QSGGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLA--KNKKQKGKTLFIDARK 392

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           + T +    +K R + D+  +++ D Y +  +GK 
Sbjct: 393 MGTMVT---RKLRELTDEDIQKLADTYNAFVDGKL 424


>gi|327467251|gb|EGF12755.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK330]
          Length = 533

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 147/323 (45%), Gaps = 43/323 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           ++ + YE+LI +F ++  + A +F TP+ V  L T  A L   D+  F        TLYD
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDEQGF--------TLYD 226

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            T G+G  L +A  +     SH   P  +   GQEL   T+ +    M++  +  +    
Sbjct: 227 ATMGSGSLLLNAKKY-----SHQ--PQTVQYFGQELNTSTYNLARMNMILHGVPVE---- 275

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            ++ +    TL +D  T +   F   L NPP+  KW      +     +     FG   P
Sbjct: 276 -NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLH----DPRFSPFGKLAP 330

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ 
Sbjct: 331 Q-SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDT 383

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D   
Sbjct: 384 VIGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHI 436

Query: 450 RQILDIYVSREN-GKFSRMLDYR 471
            +IL  Y SRE+  KF+ +  Y 
Sbjct: 437 EKILKAYKSREDMEKFAHLASYE 459


>gi|283769412|ref|ZP_06342310.1| putative type I restriction-modification system, M subunit
           [Bulleidia extructa W1219]
 gi|283103937|gb|EFC05322.1| putative type I restriction-modification system, M subunit
           [Bulleidia extructa W1219]
          Length = 510

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 178/427 (41%), Gaps = 57/427 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E      R + L   G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEK-----RYEELLKEGDGFENDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFDFSSTIAR------L 127
           V    F+   E   S + S      + + I    D  +AI  E+    + + +      L
Sbjct: 70  VEENIFFVPEEARWSKISSAAHTPEIGTVI---DDAMRAIEKENVSLKNVLPKNYASPDL 126

Query: 128 EKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +K  +L ++   F+  +++        ++   YE+ I +F +       +F TP  +V  
Sbjct: 127 DKR-VLGEVVDLFTNEVKMDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKT 185

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             A+L           P     +YDP CG+GG    +   V    +H      +  +GQE
Sbjct: 186 IVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSDNRGNISVYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW 305
              +T  +    M IR +      D +       T   D+    +  + ++NPPF    W
Sbjct: 233 SNADTWKMAKMNMAIRGI------DANFGSYHADTFFNDIHKTLKSDFIMANPPFNLSNW 286

Query: 306 EKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             DK  D V          R+  G P   + +  ++ H+ +   L PNG  +  +VL++ 
Sbjct: 287 GADKLKDDV----------RWKYGTPPSGNANYAWIQHMIH--HLAPNG--KIGLVLANG 332

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L      SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++  K ++++GK  
Sbjct: 333 AL--SSQSSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFIT--KNKKQKGKTL 388

Query: 424 LINATDL 430
            I+A  +
Sbjct: 389 FIDARKM 395


>gi|258654735|ref|YP_003203891.1| type I restriction-modification system, M subunit [Nakamurella
           multipartita DSM 44233]
 gi|258557960|gb|ACV80902.1| type I restriction-modification system, M subunit [Nakamurella
           multipartita DSM 44233]
          Length = 810

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 46/322 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++               +T+YD
Sbjct: 135 DDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVVG------INSRTRQDKTVYD 188

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +           P  +  +GQE +  T A+    M++   E      
Sbjct: 189 PTCGSGSLLLKAASEA---------PRGMTIYGQEKDNATWALSKMNMILHGNEI----- 234

Query: 272 LSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
              +I +G T++   F      + F + + NPPF  K W    + +E ++     GRF  
Sbjct: 235 --ADIAKGDTITNPQFVSGNHLRTFDFVVMNPPFSLKSW---SNGLENDY-----GRFEY 284

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   +G   FL+H    L+      G+AAI+L    LF G A   E+ +R+ LL+   
Sbjct: 285 GRPPEKNGDYAFLLHALKSLK----SVGKAAIILPHGVLFRGHA---EATVRQRLLKQGF 337

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP +LF+ T I   + IL       R G V +I+A+        +G K R+ + 
Sbjct: 338 IKGIIGLPPNLFYGTGIPACIVILDKENAVARTG-VFMIDAS---KGFMKDGNKNRLRSQ 393

Query: 447 DQRRQILDIYVSRENGKFSRML 468
           D  + +       E  ++SRM+
Sbjct: 394 DIHKIVDTFNKQLEVERYSRMV 415


>gi|15828904|ref|NP_326264.1| restriction modification enzyme subunit M2 [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089847|emb|CAC13606.1| RESTRICTION MODIFICATION ENZYME SUBUNIT M2 [Mycoplasma pulmonis]
          Length = 520

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 50/384 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDF----DFSS-TIARL--EKAGLLYKICKNFSGIELHPDTV 150
           N +ES  +  +D  K  F+D     DFS+  +  +  EK   +  I K  + + L  D V
Sbjct: 114 NKIESINSELNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIKEINTLNLSMDEV 173

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 N YE+L+  F S+  + A +F TP  V  L   ++              I   Y
Sbjct: 174 DH--FGNTYEYLLSEFASDTGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAY 223

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L    N V   G ++KI      +GQE++  T+ +     ++R +   P  
Sbjct: 224 DPACGSGSLLIKLANKV---GKYNKI------YGQEVKTATYNLARMNFILRGV---PFS 271

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            L  +++ G TL   L   +   F   ++NPPF +KW   ++  +    N       P L
Sbjct: 272 KL--DLRSGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNP-----YPSL 324

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL H+     +  + G  A++   S  + + ++   E +IR+++++ + I+
Sbjct: 325 APKSYADFAFLQHML--FHVNKDNGIIASVF--SLGILSRKSPKAEEDIRKYIIDKNYID 380

Query: 389 AIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            I+ LP +LF+ T I + + +   N+ T ++R  + +INAT  + +     KK+  ++D+
Sbjct: 381 TIIFLPPNLFYNTGIESCIIVARKNKPTNDKR--IFMINATKEFQN----AKKQNTLSDE 434

Query: 448 QRRQILDIYVS-RENGKFSRMLDY 470
              +I   +   RE   FS+ + Y
Sbjct: 435 NINRIFSAWKEKREEENFSKYISY 458


>gi|157151457|ref|YP_001449876.1| type I restriction-modification system, M subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076251|gb|ABV10934.1| type I restriction-modification system, M subunit [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 535

 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 163/366 (44%), Gaps = 48/366 (13%)

Query: 114 IFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +FED D  S        ++  L+  + K  + +E+        ++ + YE+LI +F ++ 
Sbjct: 136 LFEDIDLYSKKLGATPQKQNQLVAAVMKELAVLEVAGHA--GDMLGDAYEYLIGQFATDS 193

Query: 171 SEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            + A +F TP+ V  L T  A L   D+  F        TLYD T G+G  L +A  +  
Sbjct: 194 GKKAGEFYTPQPVAKLMTQIAFLGREDEQGF--------TLYDATMGSGSLLLNAKKY-- 243

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              SH   P  +   GQEL   T+ +    M++  +  +     ++ +    TL +D  T
Sbjct: 244 ---SHQ--PQTVQYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHNADTLDEDWPT 293

Query: 289 GK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
            +   F   L NPP+  KW      +     +     FG   P+ S     FL+H    L
Sbjct: 294 QEPTNFDGVLMNPPYSAKWSASSGFL----NDPRFSPFGKLAPQ-SKADFAFLLHGYYHL 348

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP ++FF T+I T 
Sbjct: 349 K---QDKGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPANIFFNTSIPTT 402

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + IL   +T      V  I+A+  +    ++GK + I+ D    +IL+ Y SRE   KF+
Sbjct: 403 VIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEKILEAYKSREEMDKFA 455

Query: 466 RMLDYR 471
            +  Y 
Sbjct: 456 HLASYE 461


>gi|237743940|ref|ZP_04574421.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 7_1]
 gi|229432971|gb|EEO43183.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 7_1]
          Length = 520

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 202/495 (40%), Gaps = 73/495 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGGSN 66
           A L   IW  A DL G     DF + +L     R +   L     R  +      F  +N
Sbjct: 10  AELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGNSDFNYAN 69

Query: 67  ID-------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
           +         E  ++  G+ F   SE  ++     +   NL   + +   N         
Sbjct: 70  LSDEDAIVAKEDLIRTKGF-FILPSELFINVRKKADKDENLNVTLDTIFKNIENSANGTE 128

Query: 112 -----KAIFEDFDFSS------TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                K +F+D D +S       + R E    L     +    +   +T+      + YE
Sbjct: 129 SESDLKGLFDDIDVNSNKLGGTVVKRNENLVNLINGVGDMKLGDYQENTID--AFGDAYE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   ++ TP++V  L T L L             +  +YDP CG+G  L
Sbjct: 187 YLMGMYASNAGKSGGEYYTPQEVSELLTKLTL--------VGKTEVNKVYDPACGSGSLL 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 +      +         GQE+   T+ +C   M +  ++ D       +I  G 
Sbjct: 239 LKFAKILGKNNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAHGD 287

Query: 281 TLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   + 
Sbjct: 288 TLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKSKADLA 342

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+MH  + L   PNG   AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP +L
Sbjct: 343 FIMHSLSWL--APNG--TAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPDNL 395

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IAT + +L   K +    K+  I+ +  +  + N  K      DD    I++ + 
Sbjct: 396 FYGTSIATCIMVLKKSKID---NKILFIDGSKEFVKVTNSNKMTEKHIDD----IVEKFT 448

Query: 458 SRENGKF-SRMLDYR 471
            REN ++ S +++Y 
Sbjct: 449 KRENIEYISNLIEYE 463


>gi|158520268|ref|YP_001528138.1| type I restriction-modification system, M subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509094|gb|ABW66061.1| type I restriction-modification system, M subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 808

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 144/325 (44%), Gaps = 44/325 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLY 210
           D ++ + YE+L+R F  E  +    F TP +V  + A  + + P  A+         T Y
Sbjct: 140 DDILGDAYEYLMRHFAQESGKSKGQFYTPSEVSRIIAKVIGISPQKAVAST------TAY 193

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L   +   A+ G H      +   GQE +  T  +    M++    +    
Sbjct: 194 DPTCGSGSLL---LKVAAEAGKH------ITLEGQEKDVTTAGLARMNMILHDFPT---- 240

Query: 271 DLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
               NI  G+TL+   F      + + + ++NPPF  K W     +     +N    RF 
Sbjct: 241 ---ANILNGNTLASPKFKDGEKLRTYDFVVANPPFSDKTW-----STGLTSENDPYQRFE 292

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P    G   +L+H+   ++      G+AA +L    LF G A   E+ IR+ L+ + 
Sbjct: 293 WGVPPAKQGDYAYLLHIIRSMK----STGKAACILPHGVLFRGNA---ENVIRKRLVRSG 345

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++ I+ LP +LF+ T I   + +L       R+G + +I+A+        +G K R+  
Sbjct: 346 YLKGIIGLPANLFYGTGIPACILVLDKENATARKG-IFMIDAS---RGFIKDGNKNRLRE 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDY 470
            D  + +       E  +++RM+ +
Sbjct: 402 QDIHKIVDTFRKQAETPRYARMVPF 426


>gi|237747137|ref|ZP_04577617.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes
           HOxBLS]
 gi|229378488|gb|EEO28579.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes
           HOxBLS]
          Length = 526

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 163/365 (44%), Gaps = 45/365 (12%)

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +D+   +FED D +S+    +  +K  L+ ++  +   I+         V+ + YE+LI 
Sbjct: 132 ADDFINLFEDIDLTSSKLGRSNTDKNALIARVLAHLDAIDFDLSNTETDVLGDAYEYLIG 191

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S   + A +F TP+ V  L   L+      L        R +YDPTCG+G  L    
Sbjct: 192 EFASGAGKKAGEFYTPQPVSTLLAKLVTCHRKKL--------RNVYDPTCGSGSLLLRVK 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G           +GQEL   T+ +    M++  +          +I+Q  TL +
Sbjct: 244 REAESVGR---------IYGQELNRTTYNLARMNMILHDVHYS-----DFDIRQEDTLER 289

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 RF   ++NPPF  +W  +   +  E +    G+  P     S   + F+ H+  
Sbjct: 290 PQHRDLRFDAIVANPPFSAQWSANPLFMNDE-RFSVYGKLAPA----SKADLAFVEHMIY 344

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
           +L    +  G  A+V+    LF    GS E+ IRR ++E  + ++A++ LP+++F+ T+I
Sbjct: 345 QL----SEEGTMAVVMPHGVLFR---GSSEAHIRRHIIEKMNYLDAVIGLPSNIFYGTSI 397

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +L  +K  +    +  I+A+  +  +    K +  +  +   +I++ Y  R+N  
Sbjct: 398 PTCILVL--KKCRKHPDNILFIDASQHFEKV----KTQNFLRSEDIERIVNAYAERKNID 451

Query: 463 KFSRM 467
           KF+ +
Sbjct: 452 KFAHV 456


>gi|86742693|ref|YP_483093.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86569555|gb|ABD13364.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 816

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 184/437 (42%), Gaps = 53/437 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++  A+ L G    ++F + I     L+R     E     +  + +A G S  D 
Sbjct: 55  QLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEKRIIAQLIADGRSRTDA 114

Query: 70  ESFVKVA---GYSFYNTSEYSLSTLGSTNTRN-------NLESYIASFSDNAKAIFEDFD 119
           E    +    G + Y   +   + L      N        LE      S   + + +  D
Sbjct: 115 ERQATLRARYGDTLYVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGVVQHID 174

Query: 120 FSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F+ T+ +       L  +  +F+ + L  +    PD ++   YE+LI  F     +   +
Sbjct: 175 FTRTVGQSSIPDRKLRDLIAHFNTVRLRNEDFEFPD-LLGAAYEYLIGEFADSAGKKGGE 233

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV +  AL+ DP        PGM   +YDP  G+GG L  A + VA+ G     
Sbjct: 234 FYTPRAVVRMMVALV-DP-------KPGM--EVYDPCSGSGGMLILARDWVAEHGGD--- 280

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
           P  L   GQE      ++    +L+  +          +I+ G TL++ +       +RF
Sbjct: 281 PRNLRLVGQEYNGGVWSISKMNLLLHGIPD-------ADIRNGDTLAEPMHVSSGELERF 333

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              LSNPPF + + ++    E   + G    + P   K +D  ++F+ H+   L      
Sbjct: 334 DRVLSNPPFSQNYSREGMDRENRFRWG----WAPEGGKKAD--LMFVQHMVAVL----RA 383

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS- 411
            G AA V+    LF G     E +IR  LL++D+IEA++ L  +LF+ T I   + +L  
Sbjct: 384 NGVAATVMPHGVLFRG---GTERDIRTALLDDDVIEAVIGLAPNLFYGTGIPACVLVLRA 440

Query: 412 -NRKTEERRGKVQLINA 427
              K  ER GKV  +NA
Sbjct: 441 PGSKPAERAGKVLFVNA 457


>gi|256845972|ref|ZP_05551430.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294784903|ref|ZP_06750191.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
 gi|256719531|gb|EEU33086.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294486617|gb|EFG33979.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
          Length = 520

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 207/497 (41%), Gaps = 77/497 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGGSN 66
           A L   IW  A DL G     DF + +L     R +   L     R  +      F  +N
Sbjct: 10  AELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGNSDFNYAN 69

Query: 67  ID-------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
           +         E  ++  G+ F   SE  ++     +   NL   + +   N         
Sbjct: 70  LSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIESSANGTE 128

Query: 112 -----KAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL---HPDTVPDRVMSNI 158
                K +F+D D ++     T+A+  +   L  +      ++L     +T+      + 
Sbjct: 129 SENDLKGLFDDIDVNNNKLGGTVAKRNEN--LVNLINGVGDMKLGDYQENTID--AFGDA 184

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T + L             +  +YDP CG+G 
Sbjct: 185 YEYLMGMYASNAGKSGGEYYTPQEVSELLTKITL--------VGKTEVNKVYDPACGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 237 LLLKFAKILGKNNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 285

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 286 GDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L   PNG   AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 341 LAFIMHSLSWL--APNG--TAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDGIIQLPD 393

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K    I +     I++ 
Sbjct: 394 NLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNK----ITEKHIDDIVEK 446

Query: 456 YVSRENGKF-SRMLDYR 471
           +  REN ++ S +++Y 
Sbjct: 447 FTKRENIEYISNLIEYE 463


>gi|229541311|ref|ZP_04430371.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229325731|gb|EEN91406.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 509

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 164/372 (44%), Gaps = 58/372 (15%)

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLI 163
           S   + +F + DF+S        E+  +L  + ++F+ + L P  + +  ++ N Y+++I
Sbjct: 110 SGKLRGVFRNIDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMI 169

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             F S+  +   +F TP +V  L   L+           P     +YDPTCG+G  L   
Sbjct: 170 GLFASDAGKKGGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKV 219

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V            +  +GQE    TH++ +  M +  ++          I+ G TL+
Sbjct: 220 AKQVP--------SKKVAIYGQERNGATHSLALMNMYLHGIDD-------AKIEWGDTLA 264

Query: 284 KDLF--TGK--RFHYCLSNPPFG-KKW------EKDKDAVEK-EHKNGELGRFGPGLPKI 331
             L    GK  +F   ++NPPF   KW      E + D   K E       RF  G+P  
Sbjct: 265 NPLHLEDGKLMKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPS 324

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S G   F+ H+   L       GR A +L    LF G   + E +IR+ ++E +L++A++
Sbjct: 325 SKGDYAFVQHMLYSLA----ENGRMATILPHGVLFRG---ASEGKIRKQIIELNLLDAVI 377

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKR-----RII 444
            LP  LF+ T I   + +    +T   R  V  I+A+  + +   +N+ K R     +I+
Sbjct: 378 GLPEGLFYGTGIPACIMVFRKDRT---RKDVLFIDASGEEHYEKGKNQNKLREQDIEKIV 434

Query: 445 NDDQRRQILDIY 456
              ++R+ +D Y
Sbjct: 435 ETYEKRETIDKY 446


>gi|290967797|ref|ZP_06559350.1| putative type I restriction-modification system, M subunit
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290782156|gb|EFD94731.1| putative type I restriction-modification system, M subunit
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 535

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 152/313 (48%), Gaps = 51/313 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ ++ F    ++   +F TP DVV L  A++ +P +           TLYDP CG+G
Sbjct: 172 VYEYFLKEFAVNATKEEGEFYTPHDVVKLMAAMI-EPFEG----------TLYDPACGSG 220

Query: 218 GFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G    +   V A  G+ + I      +GQE E  T+ +    + +R         +S N+
Sbjct: 221 GMFIQSAELVKATQGNLNSINI----YGQEKEAATYRLAKMNLALR--------GISHNL 268

Query: 277 --QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISD 333
                S+ + DL  G  F+Y ++NPPF  K   D++      KN    R+   G P  S+
Sbjct: 269 GGTNDSSFTHDLHKGLYFNYIMANPPFNLKGWYDENL-----KND--ARWADYGTPPESN 321

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  +++H+ + L+ P NG   A  +L++  L +    S   EIR+ L++ND +EAI+ L
Sbjct: 322 ANYAWILHILSHLK-PSNG--VAGFLLANGALND----SDTLEIRKKLIQNDKVEAIIVL 374

Query: 394 PTDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDLWT----SIRNEGKKRRI 443
           P +LF  T+I+  LWIL+  K   +      R +   I   DL T    +++ E KK+  
Sbjct: 375 PRELFITTDISVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTRTENAVKGENKKKVR 434

Query: 444 INDDQRRQILDIY 456
           ++ +Q +    IY
Sbjct: 435 LSAEQIQHAAAIY 447


>gi|162447450|ref|YP_001620582.1| type I site-specific restriction-modification system, M
           (modification) subunit [Acholeplasma laidlawii PG-8A]
 gi|161985557|gb|ABX81206.1| type I site-specific restriction-modification system, M
           (modification) subunit [Acholeplasma laidlawii PG-8A]
          Length = 495

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 193/450 (42%), Gaps = 59/450 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES--- 71
           +W+ A+ L G+ + +++  VIL    L+ +  +       ++  Y          ES   
Sbjct: 12  LWQMADKLRGNIESSEYKHVILGLVFLKYISDSFTERYEEIKANYPGMEEDRDAYESENV 71

Query: 72  -FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            FV       Y  S+   ST+G    N    +E   AS     K +         + +  
Sbjct: 72  FFVPKDARWEYIKSQAKQSTIGQIIDNAMVQIEKENASL----KGVLPKNYARPELDKTR 127

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              L+     N    E     V  RV    YE+ +++FG+  +EG  +F TP  +V L  
Sbjct: 128 LGELIDLFSFNVGSKEARAKDVLGRV----YEYFLKKFGT--TEG--EFYTPPAIVKLLV 179

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++P +            +YDP CG+GG    +   V +     KI  I + +GQE  
Sbjct: 180 N-MIEPYNG----------RVYDPCCGSGGMFVQSAKFVEEHAG--KIGNISI-YGQEYV 225

Query: 249 PETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE 306
             T  +    + IR ++++   RD       G T + D     R  Y L+NPPF  K W 
Sbjct: 226 ATTWRLAKMNLAIRGIDANLGERD-------GDTFTNDQHKTLRADYILANPPFNIKDW- 277

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                  ++H  G+  R+  G P  ++ +  ++ H+ +K  L P   G A  VL++  L 
Sbjct: 278 ------GQQHLIGD-SRWQWGTPPATNANYAWISHMISK--LSPR--GIAGFVLANGSLS 326

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
             R  S E EIR+ +LE  L++ IVA+P+ LF+  +I   LW +S  K   R+ KV  I+
Sbjct: 327 TSR--SEEYEIRKKILEEGLVDCIVAMPSQLFYDVSIPVSLWFVSKNKN-GRKDKVLFID 383

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           A  +      E +K R + D++  +I   Y
Sbjct: 384 ARKMGYM---ETRKHRELTDEESEKIYSTY 410


>gi|317182160|dbj|BAJ59944.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 529

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 166/366 (45%), Gaps = 59/366 (16%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 137 ENVKGLFADLDVNSNKLGSSHKNRVEK---LNKILQAIGGMQLGDYQKSGID-VFGDAYE 192

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 193 YLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLL 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 245 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIVHG 292

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAV----EKEHKNGELGRFGPGLPKISDG 334
            TL          F   +SNPP+  KW  D + +    E+  K G L       PK +  
Sbjct: 293 DTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPILINDERFSKAGVLA------PK-NAA 345

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP
Sbjct: 346 DLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALP 398

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL 
Sbjct: 399 DNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILQ 451

Query: 455 IYVSRE 460
            Y  R+
Sbjct: 452 TYTERK 457


>gi|311278008|ref|YP_003940239.1| type I restriction-modification system, M subunit [Enterobacter
           cloacae SCF1]
 gi|308747203|gb|ADO46955.1| type I restriction-modification system, M subunit [Enterobacter
           cloacae SCF1]
          Length = 535

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 41/352 (11%)

Query: 93  STNTRNNLESYIASFS-DNAKAIFEDFDF-SSTIARLEKAG--LLYKICKNFSGIELHPD 148
           +T  RN  +S + + S D+   +FED D  SS +    KA   L+ K+      +  +  
Sbjct: 124 ATTLRNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVVTELDKLSFNLS 183

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++ + YE+LI +F S   + A +F TP+ V  L   ++      L        + 
Sbjct: 184 EASSDILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKLKL--------KN 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L       +  G   KI      +GQE+   T+ +    M++  +    
Sbjct: 236 VYDPTCGSGSLLLRVKREASSVG---KI------YGQEMNRTTYNLARMNMILHGVHY-- 284

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                  I Q  TL     T  +F   ++NPPF  KW         + +  + G+  P  
Sbjct: 285 ---ADFEIIQEDTLEHPQHTHLKFDAIVANPPFSAKWSASP-LFMNDDRFAQYGKLAPS- 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S   M F+ H+ + LE      G  A+VL    LF G A   E  IR++++E  + I
Sbjct: 340 ---SKADMAFVQHMFHHLE----DDGTMAVVLPHGVLFRGAA---EGHIRQFMIEKLNCI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +A++ LP ++F+ T+I T + +L  RK  +    +  I+A++ +  ++ + +
Sbjct: 390 DAVIGLPANIFYGTSIPTCVLVL--RKCRKHNDSILFIDASNDFEKVKTQNR 439


>gi|261837922|gb|ACX97688.1| type I restriction enzyme modification protein [Helicobacter pylori
           51]
          Length = 525

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 55/364 (15%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 137 ENVKGLFADLDVNSNKLGSSHKNRVEK---LTKILEAIGGMQLGDYQKSGID-VFGDAYE 192

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 193 YLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLL 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 245 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIALG 292

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  DK+ +     N E  RF P   L   +   +
Sbjct: 293 DTLLDPKHEDDEPFDAIVSNPPYSTKWVGDKNPI---LINDE--RFSPAGVLAPKNAADL 347

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +
Sbjct: 348 AFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPDN 400

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K +        I+A+  +     EGKK + +    R +IL  Y
Sbjct: 401 LFFGTSIATCILVLKKNKQD---NTTLFIDASKEFVK---EGKKNK-LKARNREKILKTY 453

Query: 457 VSRE 460
             R+
Sbjct: 454 TERK 457


>gi|108563258|ref|YP_627574.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837031|gb|ABF84900.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 507

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 55/367 (14%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  D +     V  + YE
Sbjct: 119 ENVKGLFADLDVNSNKLGSSHKNRVEK---LTKILEAIGGMQL-GDYLKSGIDVFGDAYE 174

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 175 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLL 226

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + +K +I  G
Sbjct: 227 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYTKFHIALG 274

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  D + +    +     RF P   L   +   +
Sbjct: 275 DTLLDPKHEDDEPFDAIVSNPPYSTKWGGDNNPLLINDE-----RFSPAGVLAPKNAADL 329

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +
Sbjct: 330 AFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDN 382

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF TNIAT + +L   K ++       I+A+  +     EGKK + +    R +IL  Y
Sbjct: 383 LFFGTNIATCILVLKKNKKDDT---TLFIDASKEFVK---EGKKNK-LKAHNREKILQTY 435

Query: 457 VSRENGK 463
           + R+  K
Sbjct: 436 IERKEVK 442


>gi|317494152|ref|ZP_07952568.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917925|gb|EFV39268.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 535

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 156/352 (44%), Gaps = 41/352 (11%)

Query: 93  STNTRNNLESYIASFS-DNAKAIFEDFDF-SSTIARLEKAG--LLYKICKNFSGIELHPD 148
           +T  RN  +S + + S D+   +FED D  SS +    KA   L+ K+      +  +  
Sbjct: 124 ATTLRNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVITELDKLSFNLS 183

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++ + YE+LI +F S   + A +F TP+ V  L   ++      L        + 
Sbjct: 184 EASSDILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKLKL--------KN 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L       +  G   KI      +GQE+   T+ +    M++  +    
Sbjct: 236 VYDPTCGSGSLLLRVKREASSVG---KI------YGQEMNRTTYNLARMNMILHGVHY-- 284

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                  I Q  TL     T  +F   ++NPPF  KW         + +  + G+  P  
Sbjct: 285 ---ADFEIMQEDTLEHPQHTHLKFDAIVANPPFSAKWSASP-LFMNDDRFAQYGKLAPS- 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLI 387
              S   M F+ H+   LE      G  A+VL    LF G A   E  IR++++E  + I
Sbjct: 340 ---SKADMAFVQHMFYHLE----DDGTMAVVLPHGVLFRGAA---EGHIRKFMIEQQNCI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +A++ LP ++F+ T+I T + +L  RK  +    +  I+A++ +  ++ + +
Sbjct: 390 DAVIGLPANIFYGTSIPTCVLVL--RKCRKHNDGILFIDASNDFEKVKTQNR 439


>gi|315651209|ref|ZP_07904239.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315486505|gb|EFU76857.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 510

 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 173/437 (39%), Gaps = 77/437 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E     + E+     G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLEE-----GDGFEDDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
                F+   E   S + S+     +   I    DNA    E           E   L  
Sbjct: 70  AEENIFFVPEEARWSKIASSAHTAEIGIVI----DNAMREIEK----------ENVSLKN 115

Query: 135 KICKNFSGIELHPDTVPDRV------------------MSNIYEHLIRRFGSEVSEGAED 176
            + KN++G +L    + + V                  +   YE+ I +F +       +
Sbjct: 116 VLPKNYAGPDLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGE 175

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V    A+L           P     +YDP CG+GG    +   V    +H   
Sbjct: 176 FYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSDN 222

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQE   +T  +    M IR +      D +       T   D+    +  + +
Sbjct: 223 RGSISVYGQESNADTWKMAKMNMAIRGI------DANFGPYHADTFFNDIHKTLKSDFIM 276

Query: 297 SNPPFG-KKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           +NPPF    W  D  KD V          R+  G+P   + +  ++ H+ +   L PN  
Sbjct: 277 ANPPFNLSNWGADKLKDDV----------RWKYGMPPAGNANYAWIQHMIH--HLAPN-- 322

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L      SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++  
Sbjct: 323 GKIGLVLANGAL--SSQTSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFIT-- 378

Query: 414 KTEERRGKVQLINATDL 430
           K ++++G+   I+A  +
Sbjct: 379 KNKKQKGRTLFIDARKM 395


>gi|322691670|ref|YP_004221240.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516263|emb|CBK69879.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|320456526|dbj|BAJ67148.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 502

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 47/308 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ +++        ++   YE+ + +F     + A +F TP  VV     ++ 
Sbjct: 133 LGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEGKNAGEFYTPACVVKTLVEVI- 191

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    + + V     H      +  +GQE  P T 
Sbjct: 192 ---------EPYHGR-VYDPCCGSGGMFVQSADFVK---RHQGNINDISVYGQESNPTTW 238

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF------GKKWE 306
            +    + IR +++D             T  +DL   ++F + L+NPPF      GKK E
Sbjct: 239 KMATMNLAIRGIDADL------GDHNADTFFEDLHKTEKFDFILANPPFNLKDWGGKKLE 292

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D              R+  G P   + +  ++ H+ + L    N  GR  +VL++  L 
Sbjct: 293 NDV-------------RWQYGTPPEGNANFAWVQHMIHHL----NRSGRMGMVLANGAL- 334

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                + E EIR  +++ DL+E I+A+P  LF+ T I   LWI++  K +++ GK   I+
Sbjct: 335 -SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIIT--KNKKQSGKTLFID 391

Query: 427 ATDLWTSI 434
           A D+ T +
Sbjct: 392 ARDMGTMV 399


>gi|288573656|ref|ZP_06392013.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569397|gb|EFC90954.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 527

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 200/469 (42%), Gaps = 47/469 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGG 64
           S + L +++W  A  L G     D+ + I P    +RL C +  E    A++E       
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRL-CDVYDEELADALKESGGDQEY 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           + +  +    +   + +  +   +  +G    ++ L +   +  D    +F D  +++  
Sbjct: 62  AALPEQHRFHIPEDAHWKATRTKVKNVGKA-IQDALRAIETANPDTLYGVFGDAQWTNK- 119

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL    +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T R VV
Sbjct: 120 DRLPDH-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRTVV 178

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL T +L        +  PG   ++YDPTCG+ G L  A+ H+      +K    L   G
Sbjct: 179 HLMTEIL--------EPKPG--ESIYDPTCGSAGMLLSAVAHLK---RQNKEWRNLRLFG 225

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKR---FHYCLSNPP 300
           QE    T A+    + +  +E D R      I +G TL    F  G R   F   L+NPP
Sbjct: 226 QERNLLTSAIGRMNLFLHGVE-DFR------IVRGDTLGNPAFVEGDRLMQFDVVLANPP 278

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           +  K+W++D  + +        GR   G P        F  H+   ++      GR AI+
Sbjct: 279 YSIKQWDRDAWSADP------WGRSLYGTPPQGRADYAFWQHIIKSMKAK---SGRCAIL 329

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
                LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +ERR
Sbjct: 330 FPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKERR 385

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            KV  INA +    +  E  +  + ND  +R +       +   F+R++
Sbjct: 386 NKVLFINAVN---EVTRERAQSFLTNDHIQRIVAAYKAFGDEDGFARVV 431


>gi|160945580|ref|ZP_02092806.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443311|gb|EDP20316.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii
           M21/2]
          Length = 500

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 144/327 (44%), Gaps = 44/327 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ +  F  +  +   +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTLVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   V +   H      +  +GQ+  P T 
Sbjct: 190 ---------QPFKGR-VYDPCCGSGGMFVQSAKFVEN---HSGNINDISIYGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDK 309
            +    + IR +E D    L K      T   D     R  Y ++NPPF    W  E+ K
Sbjct: 237 KLAQMNLAIRGIEPD----LGK--YAADTFLDDQHPTMRADYIMANPPFNLSNWGAEQLK 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G+P  S+ +  +L H+     L P  GGR  +VL++  L    
Sbjct: 291 DDV----------RWQYGMPPASNANFAWLQHMI--YHLAP--GGRMGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S RK  ++ GK   I+A  
Sbjct: 335 QSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKRK--KQAGKTLFIDARK 392

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIY 456
           +   +    +K R + D+  ++I D Y
Sbjct: 393 MGAMV---SRKLRELTDEDIKKISDTY 416


>gi|325924114|ref|ZP_08185679.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
 gi|325545416|gb|EGD16705.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
          Length = 525

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 168/375 (44%), Gaps = 61/375 (16%)

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F++       +K  LL  + ++F+   + L P  +    ++ N YE+LI+ F S
Sbjct: 117 VFQDISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFAS 176

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L  A L+DP              + DPTCG+G  L      + 
Sbjct: 177 SSGKKAGEFYTPPEVSAL-MARLMDPQQG---------DEICDPTCGSGSLLLKCGRLIR 226

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-----RLE-SDPRRD----------- 271
           +     K       +GQE    T A+    M +      R+E  D  R+           
Sbjct: 227 ERTGSGK----YALYGQEAIGSTWALAKMNMFLHGEDNHRIEWGDTIRNPKLLDGERWDP 282

Query: 272 ----LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
                 KN +   +L+K   T K F   ++NPPF  +KW  D   V+         RF  
Sbjct: 283 FAAARGKNAKTHGSLTKPQ-TLKHFDIVVANPPFSLEKWGHDTAEVDPHD------RFRR 335

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP  + G   F++H+   +E+     GR A+V+    LF G A   E  IR+ L+E +L
Sbjct: 336 GLPPRTKGDYAFILHM---IEVMKPKSGRMAVVVPHGVLFRGAA---EGRIRQKLIEENL 389

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++ ++ LP  LF+ T I   + +   +K ++   KV  I+A+  +     +GK + ++ +
Sbjct: 390 LDVVIGLPEKLFYGTGIPAAVLVFRTKKKDK---KVLFIDASRQY----QDGKNQNLLRE 442

Query: 447 DQRRQILDIYVSREN 461
              ++ILD   +R+N
Sbjct: 443 SDLQRILDTVQARQN 457


>gi|317177320|dbj|BAJ55109.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 529

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 161/361 (44%), Gaps = 49/361 (13%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLI 163
           +N K +F D D +S     +   +   L KI K    ++L  +  +  D V  + YE+L+
Sbjct: 137 ENVKGLFADLDVNSNKLGSSHKNRVAKLNKILKAIGDMQLGDYQKSGID-VFGDAYEYLM 195

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 196 TMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQF 247

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTL 282
              + D              GQE+   T+ +C   M +  +      + SK +I  G TL
Sbjct: 248 SKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGDTL 295

Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
               L   + F   +SNPP+  KW  D + +    +     RF P   L       + F 
Sbjct: 296 LDPKLKDDEPFDAIVSNPPYSTKWMGDNNPLLINDE-----RFSPAGVLAPKKTADLAFT 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LFF
Sbjct: 351 MHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPDNLFF 403

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IAT + +L   K ++       I+A+  +     EGKK + +    R +IL  Y  R
Sbjct: 404 GTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKAHNREKILKTYTER 456

Query: 460 E 460
           +
Sbjct: 457 K 457


>gi|256833459|ref|YP_003162186.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603]
 gi|256686990|gb|ACV09883.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603]
          Length = 521

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 198/479 (41%), Gaps = 75/479 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L   +W+ A+ L G+ + +++  V+L    L+ +    E  R+ +  +  A G     L
Sbjct: 12  TLEQTLWEAADKLRGNQEPSEYKHVVLGLVFLKYISDRFEERRATLEAELAAEGIKPERL 71

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             F++       +  EY+   +           YI S +   + I +  D +  +   E 
Sbjct: 72  PDFLE-------DRDEYTSHNVFWVPELARW-GYIQSVAKQPE-IGQQIDQAMDLIEKEN 122

Query: 130 AGLLYKICKNFS-------------------GIELHPDTVPDRVMSNIYEHLIRRF-GSE 169
             L   + +N+                    G     D   D V+  +YE+ + +F G E
Sbjct: 123 PTLRGVLPRNYGRDGLDKRRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGKE 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A  F TPR VV     +L           P   R +YDP  G+GG    +   V  
Sbjct: 183 TGKDAGAFYTPRSVVKTLVEML----------EPYQGR-VYDPAAGSGGMFVQSAEFVKA 231

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLF 287
            G   K   I V +GQE    T  +    + +R +E+D  PR           + + DL 
Sbjct: 232 HGG--KRTDISV-YGQEFTDTTWKLSKMNLALRGIEADMGPR--------SADSFTDDLH 280

Query: 288 TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              R  + ++NPPF    W   K  +E +       R+  G P   + +  ++ H     
Sbjct: 281 PDLRADFVIANPPFNVSDWWDAK--LEGDP------RWQYGTPPQGNANFAWVQHFI--Y 330

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
            L P G   A  VL++  L + ++G GE E+RR L+E DL++ IVA+P  LFF T I   
Sbjct: 331 HLSPKG--TAGFVLANGSL-SSKSG-GEGEMRRKLVEADLVDCIVAMPDKLFFNTGIPVA 386

Query: 407 LWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           LW +S  +      ERR +V  I+A  L T    E ++ R++ DD   +I D Y +  N
Sbjct: 387 LWFVSKARHGNGHRERRSEVLFIDARKLGTM---ESRRLRVLTDDDIAKIADTYHAWRN 442


>gi|327404959|ref|YP_004345797.1| type I restriction-modification system, M subunit [Fluviicola
           taffensis DSM 16823]
 gi|327320467|gb|AEA44959.1| type I restriction-modification system, M subunit [Fluviicola
           taffensis DSM 16823]
          Length = 515

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 201/493 (40%), Gaps = 92/493 (18%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IWK A ++ G     DF   +L     R +        S    KY+  G   +D
Sbjct: 8   AELQAKIWKIANEVRGSVDGWDFKHFVLGALFYRFI--------SENFTKYIEGGDDGVD 59

Query: 69  LESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
             +              +K  GY  Y  S+  ++   + NT  NL + + +         
Sbjct: 60  YPNLSDDVITPEIKDDAIKTKGYFIY-PSQLFVNVAKTANTNPNLNTDLKAIFVSIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPD---R 153
                 ++ K +F DFD  +T +RL      K   L  + K   G+E L+     D    
Sbjct: 119 FGYPSEEDIKGLFADFD--TTSSRLGNTVENKNSRLASVLK---GVEQLNFGNFEDSEIE 173

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + +   +   +F TP  V  L   L      A+ K+    +  +YDP 
Sbjct: 174 LFGDAYEFLIGNYAANAGKSGGEFFTPVHVSKLIAQL------AMHKQEK--VNKIYDPA 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L  A  H      +H I       GQE+   T+ +    M +  +  D      
Sbjct: 226 AGSGSLLLQAKKHF----DNHVIEEGFF--GQEINHTTYNLARMNMFLHNVNYDKF---- 275

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NI  G+TL    F   K F   +SNPP+   W  D D            RF P   L  
Sbjct: 276 -NIALGNTLIDPHFGDDKPFDAIVSNPPYSVNWIGDGDPTLINDD-----RFAPAGVLAP 329

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +
Sbjct: 330 KSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETV 382

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQ 448
           +AL  +LF+ T+I+  + +LS  KT+    K Q I+ +  D +  + N      ++ D  
Sbjct: 383 IALAPNLFYGTSISVTILVLSKHKTDT---KTQFIDVSGEDFFKKVTN----NNVMTDTH 435

Query: 449 RRQILDIYVSREN 461
             ++++++ S+E+
Sbjct: 436 IEKVMELFDSKED 448


>gi|319775915|ref|YP_004138403.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|317450506|emb|CBY86723.1| Putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3047]
          Length = 514

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 198/484 (40%), Gaps = 76/484 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA--------- 111
              D+++  +K  GY  Y +  +    +  GS  N   +L+       ++A         
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L
Sbjct: 182 YLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A        + H I       GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQF----NEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGN 282

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S     
Sbjct: 283 TLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +L
Sbjct: 338 FILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 391 FFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 443

Query: 458 SREN 461
            +E+
Sbjct: 444 DKED 447


>gi|225023393|ref|ZP_03712585.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC
           23834]
 gi|224943871|gb|EEG25080.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC
           23834]
          Length = 513

 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 201/491 (40%), Gaps = 86/491 (17%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T   A L   IWK A+++ G     DF + +L     R +        S     Y+  G 
Sbjct: 4   TQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYMQAGD 55

Query: 65  SNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN---------LE 101
           S+ID  +              VKV GY  Y +  + +++     N   N         +E
Sbjct: 56  SSIDYAAMSDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIE 115

Query: 102 SYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHPDTVP 151
           S  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H   + 
Sbjct: 116 SSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDL- 174

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+LI  + +   +   +F TP++V  L   L +   + + K        +YD
Sbjct: 175 ---FGDAYEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A          H I       GQE+   T+ +    M +  +  +    
Sbjct: 224 PACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYNQF-- 275

Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I+ G TL+K  L   K F   +SNPP+   W    D            RF P   L
Sbjct: 276 ---HIELGDTLTKPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVL 327

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E
Sbjct: 328 APKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVE 380

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++AL  +LF+ T+IA  + +LS  K       +Q I+A+  +    N      ++ ++ 
Sbjct: 381 TVIALAPNLFYGTSIAVNILVLSKHKD---NTDIQFIDASGFFKKETN----NNVLTEEH 433

Query: 449 RRQILDIYVSR 459
             +I+ ++  +
Sbjct: 434 IAEIVKLFADK 444


>gi|291457405|ref|ZP_06596795.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213]
 gi|291381240|gb|EFE88758.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213]
          Length = 502

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 47/308 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ +++        ++   YE+ + +F     + A +F TP  VV     ++ 
Sbjct: 133 LGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEGKNAGEFYTPACVVKTLVEVI- 191

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    + + V     H      +  +GQE  P T 
Sbjct: 192 ---------EPYHGR-VYDPCCGSGGMFVQSADFVK---RHQGNINDISVYGQESNPTTW 238

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF------GKKWE 306
            +    + IR +++D             T  +DL   ++F + L+NPPF      GKK E
Sbjct: 239 KMATMNLAIRGIDADL------GDHNADTFFEDLHKTEKFDFILANPPFNLKDWGGKKLE 292

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D              R+  G P   + +  ++ H+ + L    N  GR  +VL++  L 
Sbjct: 293 NDV-------------RWQYGTPPEGNANFAWVQHMIHHL----NRSGRMGMVLANGAL- 334

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                + E EIR  +++ DL+E I+A+P  LF+ T I   LWI++  K +++ GK   I+
Sbjct: 335 -SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIIT--KNKKQSGKTLFID 391

Query: 427 ATDLWTSI 434
           A D+ T +
Sbjct: 392 ARDMGTMV 399


>gi|153000715|ref|YP_001366396.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS185]
 gi|151365333|gb|ABS08333.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS185]
          Length = 847

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 133/296 (44%), Gaps = 49/296 (16%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP +V  +   ++
Sbjct: 115 LTKLVGIFQGLDLTGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSQILAKVV 174

Query: 192 ----LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
                 P DA          T+YDPTCG+G  L  A N           P  L   GQE+
Sbjct: 175 GIQNNTPQDA----------TVYDPTCGSGSLLLKASNEA---------PRGLSIFGQEM 215

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG 302
           +  T A+    M++         + +  I +G+TL+   +       K F + ++NPPF 
Sbjct: 216 DNATSALARMNMILHN-------NATAKIWKGNTLADPQWKDGANKLKTFDFAVANPPFS 268

Query: 303 KK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            K W    + +     N   GRF  G P   +G   FL+H+   L+      G+ A++L 
Sbjct: 269 NKNWTSGLNPL-----NDPYGRFTWGTPPEKNGDYTFLLHIITSLK----STGKGAVILP 319

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
              LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++     ++
Sbjct: 320 HGVLFRGNA---EANIRQNLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAQK 372


>gi|315222636|ref|ZP_07864525.1| putative type I restriction-modification system, M subunit
           [Streptococcus anginosus F0211]
 gi|315188322|gb|EFU22048.1| putative type I restriction-modification system, M subunit
           [Streptococcus anginosus F0211]
          Length = 496

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 134/301 (44%), Gaps = 38/301 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  + ++FS   L     P   +   YE+LI++F  +    A++F T R VV+L   +L
Sbjct: 127 LLKDMLEHFSTKTLSIANCPADELGQGYEYLIKQFADDSGHTAQEFYTNRTVVNLMIEML 186

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P    ++YDPTCG+ G L  A+ ++   G   +   I   +GQE+   T
Sbjct: 187 ----------KPQPSESIYDPTCGSAGMLISAVAYLKQQGLEWRNLSI---YGQEIVTLT 233

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG-KKWE 306
            A+    +L+  ++         NI    TL    FT     ++F   L+NPP+   +W 
Sbjct: 234 SAIARMNLLLHGVQD-------FNIVNADTLKTPAFTDHAKLQQFDLILANPPYSISQW- 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D+ A E +    + GR   G P        F  H+   L+      GR AI+     LF
Sbjct: 286 -DRTAFESD----KYGRNFLGTPPQGRADYAFFQHILKSLD---EKTGRCAILFPHGVLF 337

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                  E ++R  L+++DL+E ++ L  +LF+ + +   + I   RK   R G+V  IN
Sbjct: 338 RNE----EKDMREKLVKSDLVECVIGLGPNLFYNSPMEACIIICRTRKAVNREGQVLFIN 393

Query: 427 A 427
           A
Sbjct: 394 A 394


>gi|307711302|ref|ZP_07647723.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK321]
 gi|307616953|gb|EFN96132.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK321]
          Length = 533

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 176/386 (45%), Gaps = 55/386 (14%)

Query: 100 LESYIASFSDNAKA------IFEDFDF-----SSTIARLEKAGLLYKICKNFSGIELHPD 148
           LES   SF D  +A      +FED D       +T  +  K   + ++ K  +  +L+  
Sbjct: 114 LESLAQSFRDIEQANEKFENLFEDIDLYAKKLGNTPQKQNKT--ISEVMKQLN--DLNVS 169

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++ + YE+LI +F S+  + A +F TP+ V HL T ++     A  +   GM  +
Sbjct: 170 GHAGDILGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVF----AGREHQKGM--S 223

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPT G+G  L +A  +     +       +  +GQEL   T  +    M++  +  + 
Sbjct: 224 VYDPTMGSGSLLLNAKRYSKQAST-------ISYYGQELITSTFNLARMNMMLHGVAIE- 275

Query: 269 RRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               + ++    TL +D  T +   F   L NPP+  KW  D   ++    +     +G 
Sbjct: 276 ----NYHLSNHDTLDEDWPTTEPTDFDGVLMNPPYSLKWSADSGFLQ----DPRFSSYGV 327

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             PK S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   
Sbjct: 328 LAPK-SKADFAFLLHGFYHLK----HSGVMAIVLPHGVLFRGAA---EQKIRQHLLEEGA 379

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ LP ++F+ T+I T + IL   +T +    V  I+A+  +     +GK +  + +
Sbjct: 380 IDTVIGLPANIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----EKGKNQNNMTE 432

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYR 471
           D   +IL+ Y  REN  KF+ +  + 
Sbjct: 433 DHIAKILETYQKRENVEKFAHLASFE 458


>gi|116255297|ref|YP_771130.1| putative type I restriction enzyme [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259945|emb|CAK03042.1| putative type I restriction enzyme [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 519

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 44/307 (14%)

Query: 132 LLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLAT 188
           +L ++   FS I LH   DT  D ++  +YE+ +  F GSE   G E F TPR VV    
Sbjct: 132 MLGELIDLFSNIGLHDSKDTAKD-LLGRVYEYFLSGFAGSEGKRGGE-FFTPRSVVRTLV 189

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L           P   R +YDP CG+GG    + N + + G        +  +GQE+ 
Sbjct: 190 EML----------EPYKGR-VYDPCCGSGGMFVQSENFIEEHGGRRND---IAVYGQEIN 235

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEK 307
             T  +    + ++ +++D R +      +GS   +D     +  + L+NPPF    W  
Sbjct: 236 HTTWRLAKMNLAVQGIDADIRWN-----NEGS-FHRDELPDLKADFILANPPFNISDWGG 289

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           ++ A        E  R+  G P   + +  +L H+ +   L P G   A +VL++  + +
Sbjct: 290 ERLA--------EDTRWKFGKPPNGNANFGWLQHIIH--HLAPRG--TAGVVLANGSMSS 337

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EERRGKVQ 423
            +  SGE EIR+ ++E D ++ +VALP  LF+ T I   LWIL+  K+     +RRG++ 
Sbjct: 338 QQ--SGEGEIRKAMIERDQVDCMVALPGQLFYSTQIPACLWILARDKSANGHRDRRGEIL 395

Query: 424 LINATDL 430
            I+A  L
Sbjct: 396 FIDARKL 402


>gi|312867234|ref|ZP_07727444.1| type I restriction-modification system, M subunit [Streptococcus
           parasanguinis F0405]
 gi|311097363|gb|EFQ55597.1| type I restriction-modification system, M subunit [Streptococcus
           parasanguinis F0405]
          Length = 523

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 136/317 (42%), Gaps = 38/317 (11%)

Query: 109 DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIR 164
           D+ K +F++ D  S I      EK   L  I    + I        D     + YE LI 
Sbjct: 132 DDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAFGDAYEFLIS 191

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S   +   +F TP+ V  L   L++   D         I  +YDPTCG+G  L    
Sbjct: 192 NYASNAGKSGGEFFTPQTVSKLLARLVMVGKDK--------INKVYDPTCGSGSLLLQMK 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-S 283
               D    H +       GQE+    + +    M +  +  +     + +I++G TL +
Sbjct: 244 KQYED----HILEDGFF--GQEINMTNYNLARMNMFLHNINYN-----NFDIKRGDTLLN 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
                 K F   +SNPP+  KW  D D            RF P   L   S     F+MH
Sbjct: 293 PQHLDEKPFDAIVSNPPYSVKWVGDGDPTLINDD-----RFAPAGKLAPKSKADFAFIMH 347

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             N L    +  GRAAIV      + G A   E  IR++L++N+ +EA++ALP +LFF T
Sbjct: 348 SLNHL----SNRGRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVIALPDNLFFGT 400

Query: 402 NIATYLWILSNRKTEER 418
           +IAT + +L+  K E +
Sbjct: 401 SIATTILVLAKNKLENK 417


>gi|282881750|ref|ZP_06290411.1| putatIve type i restriction enzyme hindviip m protein
           [Peptoniphilus lacrimalis 315-B]
 gi|281298400|gb|EFA90835.1| putatIve type i restriction enzyme hindviip m protein
           [Peptoniphilus lacrimalis 315-B]
          Length = 510

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 177/427 (41%), Gaps = 57/427 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E      R + L   G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEK-----RYEELLKDGDGFENDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFDFSSTIAR------L 127
                F+   E   S + S      + + I    D  +AI  E+    + + +      L
Sbjct: 70  AEENIFFVPEEARWSKISSAAHTPEIGTVI---DDAMRAIEKENTSLKNVLPKNYASPDL 126

Query: 128 EKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +K  +L ++   F+  +++        ++   YE+ I +F +       +F TP  +V  
Sbjct: 127 DKR-VLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKT 185

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             A+L           P     +YDP CG+GG    +   V    +H      +  +GQE
Sbjct: 186 IVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSDNRGNISVYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW 305
              +T  +    M IR +      D +       T   D+    +  + ++NPPF    W
Sbjct: 233 SNADTWKMAKMNMAIRGI------DANFGSYHADTFFNDIHKTLKSDFIMANPPFNLSNW 286

Query: 306 EKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             DK  D V          R+  G P   + +  ++ H+ +   L PNG  +  +VL++ 
Sbjct: 287 GADKLKDDV----------RWKYGTPPSGNANYAWIQHMIH--HLAPNG--KIGLVLANG 332

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L      SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++  K ++++GK  
Sbjct: 333 AL--SSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFIT--KNKKQKGKTL 388

Query: 424 LINATDL 430
            I+A  +
Sbjct: 389 FIDARKM 395


>gi|324990377|gb|EGC22315.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK353]
          Length = 538

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 208/497 (41%), Gaps = 88/497 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A  +   +W  A  L G    +++   ILPF   R L        S  ++ YLA  G  
Sbjct: 3   TANDITTKLWAMANKLRGTMDASEYKNYILPFMFYRYL--------SENQDVYLAQNGLE 54

Query: 67  -----ID-------LESFVKVAGYSFYNTSEYSLSTLGST--NTR---NNLESYIASFSD 109
                ID       LE      GY+     EY+   L +   N R   ++ +    SF  
Sbjct: 55  EFYDVIDDEEQEDYLEDISSNLGYAI--KPEYTWGRLVAKIENHRIKASDFQDMFDSFET 112

Query: 110 NAK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            AK           +F D +   T  RL     E+A  L  I           ++  D +
Sbjct: 113 QAKRNPMAEQDFANVFSDINLGDT--RLGSSTNERAKALNDIVLMIHEFSFKDESGRD-I 169

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPT 213
           + ++YE+LI +F +   +   +F TP +V   LA  + +D      KE+    R +YDPT
Sbjct: 170 LGDVYEYLIGQFAANAGKKGGEFYTPHEVSQILAKLVTVDA-----KENDDQFR-VYDPT 223

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      + +     K    +  +GQEL   T+ +    +++  +     R++ 
Sbjct: 224 MGSGSLLLTVQKELPEG----KREGSVAFYGQELNTTTYNLARMNLMMHGVN---YRNM- 275

Query: 274 KNIQQGSTLSKDL-FTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            N+++G TL  D  F  K       +F   ++NPP+ +KWE       K     +  RF 
Sbjct: 276 -NLKRGDTLDTDWPFAEKDGIQLPLKFDAVVANPPYSQKWEI------KSIDRSKDSRFK 328

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+   S     F++H    LE      G  AIVL    LF G A   E +IR+ +++ +
Sbjct: 329 FGVAPASKADYAFILHGLYHLE----STGTMAIVLPHGVLFRGAA---EGKIRKKIIDEN 381

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRII 444
           L+ A++ LP +LF+ T+I T + +   RK       V  I+ A+D       +GK +  +
Sbjct: 382 LLHAVIGLPANLFYGTSIPTCVLVFKGRKARGECSDVLFIDGASDF-----EKGKNQNKL 436

Query: 445 NDDQRRQILDIYVSREN 461
             D   +I++ Y  RE+
Sbjct: 437 TADNITKIIETYHEREH 453


>gi|294155919|ref|YP_003560303.1| type I restriction-modification system, methyltransferase
           [Mycoplasma crocodyli MP145]
 gi|291600214|gb|ADE19710.1| type I restriction-modification system, methyltransferase
           [Mycoplasma crocodyli MP145]
          Length = 523

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 36/286 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP++V      + L     ++K S   I ++YDPTCG+G 
Sbjct: 188 YEYLIGMYAASGGKSGGEFFTPQEVSKFLANVTL-----VYKNSKD-IYSVYDPTCGSGS 241

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      + +        P L   GQE  P T ++    ++I  +E D + DL    + 
Sbjct: 242 LLLKFKKILNN--------PYLHFSGQESNPTTFSLSKMNLIIHGVEFD-KIDL----KC 288

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL+  L   K+F   +SNPP+   WE   D  E   ++ E     P L   S+  + F
Sbjct: 289 GDTLNDPLHLEKKFDVVVSNPPYSIAWE---DYNETSIRSDERFNIVPTLMPKSNSDLGF 345

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H    L+      G AAIV      +  R    E  IR++L+EN+ IEAI+ +P ++F
Sbjct: 346 VLHSLYSLD----KKGVAAIVCFPGMFY--RDNESEVNIRKYLVENNFIEAIIVMPNNMF 399

Query: 399 FRTNIATYLWILS-NRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           F T+I+  + +L+ N++T++       I   D  +    +GKK ++
Sbjct: 400 FGTSISVNIMVLNKNKQTKD-------ILFVDASSHFYKDGKKNKM 438


>gi|238923778|ref|YP_002937294.1| type I restriction-modification system, M subunit [Eubacterium
           rectale ATCC 33656]
 gi|238875453|gb|ACR75160.1| type I restriction-modification system, M subunit [Eubacterium
           rectale ATCC 33656]
          Length = 544

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 185/413 (44%), Gaps = 49/413 (11%)

Query: 101 ESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VM 155
           ES   S S+N+ A +F+D+D +S       A    ++ K   GI  ++  +V D      
Sbjct: 146 ESAKGSQSENSFAGLFDDYDVNSNKLGSTVAKRNERLVKLLDGIASMNLGSVKDHDIDAF 205

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP DV  L T L       + K++   +  +YDP CG
Sbjct: 206 GDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRL-----GTVGKKT---VNKVYDPACG 257

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A   +       K    +   GQE+   T+ +C   M +  +  D       +
Sbjct: 258 SGSLLLKAEKVLG------KDSVKIGFFGQEINITTYNLCRINMFLHDIGFDKF-----D 306

Query: 276 IQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I+   TL+    +  + F   +SNPP+  KWE D + +          RF P   L   S
Sbjct: 307 IECEDTLTNPQHWDDEPFELIVSNPPYSIKWEGDDNPLLINDP-----RFSPAGVLAPKS 361

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+ ++ 
Sbjct: 362 KADLAFIMHSLSWLA----ANGTAAIVCFPGIMYRGGA---EKKIRQYLIDNNFIDCVIQ 414

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP++LFF T+IAT + ++   KT+        I+A++    + N  K    +  +   +I
Sbjct: 415 LPSNLFFGTSIATCIMVMKKNKTD---NNTLFIDASNECVKVTNNNK----LTKENIDRI 467

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRR--IKVLRPLRMSFILDKTGLARLEADI 502
           +D++ +R E    S +  Y     +   + V   +    I +K  + +L A+I
Sbjct: 468 VDVFSNRTEEEHLSYLASYEEIKEKEYNLSVSTYVEAEDIREKIDIVKLNAEI 520


>gi|146302128|ref|YP_001196719.1| type I restriction-modification system, M subunit [Flavobacterium
           johnsoniae UW101]
 gi|146156546|gb|ABQ07400.1| type I restriction-modification system, M subunit [Flavobacterium
           johnsoniae UW101]
          Length = 515

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 201/496 (40%), Gaps = 94/496 (18%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T   A L   IWK A ++ G     DF + +L     R +        S     Y+  G 
Sbjct: 4   TAQRAELLAKIWKIANEVRGAVDGWDFKQFVLGTLFYRYI--------SENFTNYIEAGD 55

Query: 65  SNIDLESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
            +ID  S              +K  GY  Y +  Y ++   + NT  NL + + +     
Sbjct: 56  DSIDYASLSDDVITPEIKDDAIKTKGYFIYPSQLY-VNIAKTANTNPNLNTDLKNIFTAI 114

Query: 108 --------SDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICK-----NFSGIELHPD 148
                   S+ A K +F DFD  +T +RL      K   L  + K     NF   E   D
Sbjct: 115 ESSANGYPSEEAIKGLFADFD--TTSSRLGNTVENKNSRLASVLKGVEELNFGNFE---D 169

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              D +  + YE LI  + +   +   +F TP  V  L   L      A+ K+    +  
Sbjct: 170 NKID-LFGDAYEILISNYAANAGKSGGEFFTPVHVSKLIAQL------AMHKQEK--VNK 220

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L  A  H  D    H I       GQE+   T+ +    M +  +  D 
Sbjct: 221 IYDPAAGSGSLLLQAKKHFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNVNYDK 274

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 NI  G TL    +   K F   +SNPP+  KW  D D            RF P 
Sbjct: 275 F-----NIALGDTLHHPHYIDDKPFDAIVSNPPYSIKWIGDDDPTLINDD-----RFAPA 324

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+
Sbjct: 325 GVLAPKSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNN 377

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRI 443
            +E I+++  +LF+ T+IA  + +LS  KT+      Q I+A+  D +  + N      +
Sbjct: 378 FVETIISVAPNLFYGTSIAVTILVLSKHKTDTT---TQFIDASGEDFFKKVTN----NNM 430

Query: 444 INDDQRRQILDIYVSR 459
           + D    +I++++ S+
Sbjct: 431 MTDTHIDKIMELFDSK 446


>gi|15842294|ref|NP_337331.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31793930|ref|NP_856423.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium bovis AF2122/97]
 gi|121638634|ref|YP_978858.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215404725|ref|ZP_03416906.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|215412570|ref|ZP_03421298.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428188|ref|ZP_03426107.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|215431697|ref|ZP_03429616.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis EAS054]
 gi|215447008|ref|ZP_03433760.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T85]
 gi|219558766|ref|ZP_03537842.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|224991126|ref|YP_002645815.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254232854|ref|ZP_04926181.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis C]
 gi|254365407|ref|ZP_04981452.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260201885|ref|ZP_05769376.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis T46]
 gi|289444300|ref|ZP_06434044.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T46]
 gi|289570935|ref|ZP_06451162.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|289746559|ref|ZP_06505937.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|289751413|ref|ZP_06510791.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|289754861|ref|ZP_06514239.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis EAS054]
 gi|289758883|ref|ZP_06518261.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis T85]
 gi|294994150|ref|ZP_06799841.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis 210]
 gi|298526223|ref|ZP_07013632.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|13882588|gb|AAK47145.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31619524|emb|CAD94962.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM
           (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494282|emb|CAL72760.1| Possible type I restriction/modification system dna methylase hsdM
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601913|gb|EAY60923.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis C]
 gi|134150920|gb|EBA42965.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis str. Haarlem]
 gi|224774241|dbj|BAH27047.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417219|gb|EFD14459.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T46]
 gi|289544689|gb|EFD48337.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|289687087|gb|EFD54575.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|289692000|gb|EFD59429.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|289695448|gb|EFD62877.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis EAS054]
 gi|289714447|gb|EFD78459.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis T85]
 gi|298496017|gb|EFI31311.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|323718603|gb|EGB27767.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904371|gb|EGE51304.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis W-148]
          Length = 540

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 180/447 (40%), Gaps = 63/447 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G     +E
Sbjct: 18  LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEESQIE 77

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
             +    +  GY  +     +     + NT+           +  + I E  D       
Sbjct: 78  DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP 137

Query: 120 -FSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
               T+ RL         + G L  +  N +      +     +M  +YE+ +  F    
Sbjct: 138 TLGGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGEHRARDLMGEVYEYFLGNFARAE 196

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +   +L        + S G +   YDP CG+GG        + + 
Sbjct: 197 GKRGGEFFTPPSVVKVIVEVL--------EPSSGRV---YDPCCGSGGMFVQTEKFIYE- 244

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H   P  +  +GQE   ET  +    + I  +++          +   T ++D     
Sbjct: 245 --HDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNK-----GLGARWSDTFARDQHPDV 297

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  Y ++NPPF  K W           +N E  R+  G+P  ++ +  ++ H+  KL   
Sbjct: 298 QMDYVMANPPFNIKDW----------ARNEEDPRWRFGVPPANNANYAWIQHILYKLAP- 346

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRA +V+++  + +    +GE +IR  ++E DL+  +VALPT LF  T I   LW 
Sbjct: 347 ---GGRAGVVMANGSMSSN--SNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCLWF 401

Query: 410 LSNRKTE------ERRGKVQLINATDL 430
            +  K        +R G+V  I+A +L
Sbjct: 402 FAKDKAAGKQGSIDRCGQVLFIDAREL 428


>gi|289449831|ref|YP_003475628.1| type I restriction-modification system subunit M [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184378|gb|ADC90803.1| type I restriction-modification system, M subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 522

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 168/396 (42%), Gaps = 55/396 (13%)

Query: 92  GSTNTRNNLESYIASFSDNAKA---------IFEDFDFSSTIARLEKAGLLYKICKNFSG 142
           G  N    LE       ++AK          +F+DFD +S       A    K+CK   G
Sbjct: 107 GDENLNETLEKVFRHIEESAKGSESESDFAGLFDDFDVNSNKLGSTVAKRNEKLCKLLDG 166

Query: 143 I-ELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           + +++   V +       + YE+L+  + S   +   +F TP DV  L T +        
Sbjct: 167 VADMNIGDVKNHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRI-------- 218

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                  I  +YDP CG+G  L  A   +       KI      +GQE+   T+ +C   
Sbjct: 219 GTVGKTEINKVYDPACGSGSLLLKAEKVLG----RDKIRNGF--YGQEINITTYNLCRIN 272

Query: 259 MLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M +  +  D       NI    TL +   +  + F   +SNPP+  KW  D + +     
Sbjct: 273 MFLHDIGFDKF-----NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDDNPLLINDP 327

Query: 318 NGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                RF P   L   S   + F+MH  + L       G AAIV     ++ G A   E 
Sbjct: 328 -----RFAPAGVLAPKSKADLAFIMHSLSWLA----SNGTAAIVCFPGIMYRGGA---EQ 375

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR++L++N+ ++ I+ LP++LFF T+IAT + +L   K +    K   I+AT+    + 
Sbjct: 376 KIRKYLIDNNYVDCIIQLPSNLFFGTSIATCIMVLKKGKED---NKTLFIDATNECIKVT 432

Query: 436 NEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470
           N  K  R   D    +I+D + + RE   FS +  Y
Sbjct: 433 NNNKLTRKNMD----KIVDCFANRREIEHFSHLATY 464


>gi|260589481|ref|ZP_05855394.1| type I restriction-modification system, M subunit [Blautia hansenii
           DSM 20583]
 gi|260540049|gb|EEX20618.1| type I restriction-modification system, M subunit [Blautia hansenii
           DSM 20583]
          Length = 522

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 162/367 (44%), Gaps = 46/367 (12%)

Query: 101 ESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDR---VM 155
           ES   S S+N+ A +F+DFD +S       A    ++ K   G+  ++  +V D      
Sbjct: 123 ESAQGSQSENSFAGLFDDFDVNSNKLGSTVAKRNERLVKLLDGVAAMNLGSVKDHDIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG
Sbjct: 183 GDAYEYLMTMYASNAGKSGGEFFTPADVSVLLTKL--------GTVGKTTINKVYDPACG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A   +               +GQE+   T+ +C   M +  +  D       +
Sbjct: 235 SGSLLLKAEKLLGKEAVTSGF------YGQEINITTYNLCRINMFLHDIGFDKF-----D 283

Query: 276 IQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I+   TL+    +  + F   +SNPP+  KW  D + +          RF P   L   S
Sbjct: 284 IECEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDDNPLLINDP-----RFAPAGVLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              M F+MH  + L   PNG   AAIV     ++ G A   E +IR+++++N+ I+ I+ 
Sbjct: 339 KADMAFIMHSLSWL--APNG--TAAIVCFPGIMYRGGA---EKKIRQYMVDNNYIDCIIQ 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + ++   K  ++   +  I+AT+    + N  K    + DD    I
Sbjct: 392 LPNNLFFGTSIATCIMVM---KKGKKDNNILFIDATNECIKVTNNNK----LTDDNIENI 444

Query: 453 LDIYVSR 459
           +  +V R
Sbjct: 445 IKWFVER 451


>gi|260187773|ref|ZP_05765247.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis CPHL_A]
 gi|289448412|ref|ZP_06438156.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CPHL_A]
 gi|289421370|gb|EFD18571.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CPHL_A]
          Length = 540

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 180/447 (40%), Gaps = 63/447 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G     +E
Sbjct: 18  LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEESQIE 77

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
             +    +  GY  +     +     + NT+           +  + I E  D       
Sbjct: 78  DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP 137

Query: 120 -FSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
               T+ RL         + G L  +  N +      +     +M  +YE+ +  F    
Sbjct: 138 TLGGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGEHRARDLMGEVYEYFLGNFARAE 196

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +   +L        + S G +   YDP CG+GG        + + 
Sbjct: 197 GKRGGEFFTPPSVVKVIVEVL--------EPSSGRV---YDPCCGSGGMFVQTEKFIYE- 244

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H   P  +  +GQE   ET  +    + I  +++          +   T ++D     
Sbjct: 245 --HDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNK-----GLGARWSDTFARDQHPDV 297

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  Y ++NPPF  K W           +N E  R+  G+P  ++ +  ++ H+  KL   
Sbjct: 298 QMDYVMANPPFNIKDW----------ARNEEDPRWRFGVPPANNANYAWIQHILYKLAP- 346

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRA +V+++  + +    +GE +IR  ++E DL+  +VALPT LF  T I   LW 
Sbjct: 347 ---GGRAGVVMANGSMSSN--SNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCLWF 401

Query: 410 LSNRKTE------ERRGKVQLINATDL 430
            +  K        +R G+V  I+A +L
Sbjct: 402 FAKDKAAGKQGSIDRCGQVLFIDAREL 428


>gi|260206067|ref|ZP_05773558.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis K85]
 gi|289575453|ref|ZP_06455680.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis K85]
 gi|289539884|gb|EFD44462.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis K85]
          Length = 540

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 180/447 (40%), Gaps = 63/447 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G     +E
Sbjct: 18  LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEESQIE 77

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
             +    +  GY  +     +     + NT+           +  + I E  D       
Sbjct: 78  DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP 137

Query: 120 -FSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
               T+ RL         + G L  +  N +      +     +M  +YE+ +  F    
Sbjct: 138 TLGGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGEHRARDLMGEVYEYFLGNFARAE 196

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +   +L        + S G +   YDP CG+GG        + + 
Sbjct: 197 GKRGGEFFTPPSVVKVIVEVL--------EPSSGRV---YDPCCGSGGMFVQTEKFIYE- 244

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H   P  +  +GQE   ET  +    + I  +++          +   T ++D     
Sbjct: 245 --HDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNK-----GLGARWSDTFARDQHPDV 297

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  Y ++NPPF  K W           +N E  R+  G+P  ++ +  ++ H+  KL   
Sbjct: 298 QMDYVMANPPFNIKDW----------ARNEEDPRWRFGVPPANNANYAWIQHILYKLAP- 346

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRA +V+++  + +    +GE +IR  ++E DL+  +VALPT LF  T I   LW 
Sbjct: 347 ---GGRAGVVMANGSMSSN--SNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCLWF 401

Query: 410 LSNRKTE------ERRGKVQLINATDL 430
            +  K        +R G+V  I+A +L
Sbjct: 402 FAKDKAAGKQGSIDRCGQVLFIDAREL 428


>gi|289624201|ref|ZP_06457155.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330869549|gb|EGH04258.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 473

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 144/329 (43%), Gaps = 45/329 (13%)

Query: 112 KAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
           K +F DFD +S     T+A  +K   L  + K  + +E    D     +  + YE LI  
Sbjct: 129 KGLFADFDTTSNRLGNTVA--DKNKRLADVLKGVNKLEFGSFDASHIDLFGDAYEFLISN 186

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP+ V  L   L      A+ K++   +  +YDP CG+G  L  A  
Sbjct: 187 YAANAGKSGGEFFTPQHVSKLIAQL------AMHKQTS--VNKIYDPACGSGSLLLQAKK 238

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H       H I       GQE+   T+ +    M +  +  D       +IQ G TL   
Sbjct: 239 HF----DAHVIQDGFF--GQEVNHTTYNLARMNMFLHNINYDKF-----DIQLGDTLRHP 287

Query: 286 LF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
            F   K F   +SNPP+  KW    D            RF P   L   S     F++H 
Sbjct: 288 HFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVLHA 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF T 
Sbjct: 343 LSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFGTT 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLW 431
           IA  + +LS  K +      Q I+A+ L+
Sbjct: 396 IAVNILVLSKHKLDT---TTQFIDASALF 421


>gi|312136020|ref|YP_004003358.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor owensensis OL]
 gi|311776071|gb|ADQ05558.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor owensensis OL]
          Length = 514

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 142/304 (46%), Gaps = 43/304 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ +  F  +  +   +F TP  VV L   ++           P   R ++DP 
Sbjct: 168 VLGRVYEYFLSEFARKEGKRGGEFFTPSSVVKLLVEMI----------QPLHGR-VFDPC 216

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    ++  V    +H      +  +GQE  P T+ +C   + IR +E+D      
Sbjct: 217 CGSGGMFVQSIRFVE---AHAGKKGDISIYGQESNPTTYRLCKMNLAIRGIEAD------ 267

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+ G++ + D F   R  Y L+NPPF    W  D+ A +         R+  GLP  S
Sbjct: 268 --IRLGNSFTDDQFKDLRADYILANPPFNDSAWGADRLANDV--------RWKYGLPPDS 317

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H      L P G   A  VL++  +    + + E EIR+ ++E++L++ +VA
Sbjct: 318 NANYAWIQHFI--YHLAPKG--VAGFVLANGSMTT--SNNAEYEIRKRIIEDNLVDCMVA 371

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I   LW +  RK  E + +   I+A  +   +    +  R + D++ ++I
Sbjct: 372 LPPQLFYTTGIPACLWFI--RKGRETK-ETLFIDARKMGVMV---DRTHRELTDEEIQKI 425

Query: 453 LDIY 456
            + Y
Sbjct: 426 AETY 429


>gi|68248821|ref|YP_247933.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|148825522|ref|YP_001290275.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE]
 gi|229847391|ref|ZP_04467492.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae
           7P49H1]
 gi|68057020|gb|AAX87273.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|148715682|gb|ABQ97892.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE]
 gi|229809717|gb|EEP45442.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae
           7P49H1]
          Length = 514

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 198/484 (40%), Gaps = 76/484 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASF--SDNA 111
              D+++  +K  GY  Y +  +      + N  N          ++E+    F    + 
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L
Sbjct: 182 YLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A          H I       GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGN 282

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL +  F   K F   +SNPP+  KW    +      +     RF P   L   S     
Sbjct: 283 TLMEPQFGDDKPFDAIVSNPPYSVKWAGSDNPTLINDE-----RFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  +L
Sbjct: 338 FILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 391 FYGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 443

Query: 458 SREN 461
           ++E+
Sbjct: 444 NKED 447


>gi|296188045|ref|ZP_06856437.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|296047171|gb|EFG86613.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 529

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 214/502 (42%), Gaps = 108/502 (21%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE---- 70
           +W  A +L G    +++   IL F   R L        S  +EKYL  G + ID+E    
Sbjct: 12  LWAMANELRGTMDASEYKNYILAFMFYRYL--------SEHQEKYLV-GNNVIDVEKGES 62

Query: 71  ---SFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFSD------NAKAIFEDFD 119
              +++K A  +  +    + SLS   +    +  ES I   +D      + + IF++F+
Sbjct: 63  INDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIPSDYQTIFDNFN 122

Query: 120 FSSTI-------------------ARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155
            ++ +                   +RL     E+A  L  I K   GIE   D   D ++
Sbjct: 123 KNAELNKEAVKDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKD-IL 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDP 212
             IYE+LI +F +   +   +F TP  V  +   ++   ++  D  F         LYDP
Sbjct: 182 GEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTSGVEKSDEFF--------NLYDP 233

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L          G        +   GQEL   T+ +    +++         D+
Sbjct: 234 TMGSGSLLLT-------VGQELPKGTPMKYFGQELNTTTYNLARMNLMMH--------DV 278

Query: 273 SKN---IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           S N   +    TL  D   G         + F   ++NPP+  KW+ D+  + K+ +  +
Sbjct: 279 SYNNMVLNNADTLESDWPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSD 337

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            G+  P     S     F++H    L    N  G  AIVL    LF G A   E +IR+ 
Sbjct: 338 YGKLAPA----SKADYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQT 386

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E + ++ ++ LP +LF+ T+I T + +   NRKT++    +  I+A++ +     +GK
Sbjct: 387 LIEKNYLDTVIGLPANLFYGTSIPTTILVFKKNRKTKD----ILFIDASNDFE----KGK 438

Query: 440 KRRIINDDQRRQILDIYVSREN 461
            +  +ND+   +I++ +  R++
Sbjct: 439 NQNNLNDENIDKIINTFKERKD 460


>gi|15829149|ref|NP_326509.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis UAB
           CTIP]
 gi|14090093|emb|CAC13851.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M1 [Mycoplasma pulmonis]
          Length = 520

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 50/384 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDF----DFSS-TIARL--EKAGLLYKICKNFSGIELHPDTV 150
           N +ES  +  +D  K  F+D     DFS+  +  +  EK   +  I K  + + L  D V
Sbjct: 114 NKIESINSELNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIKEINTLNLSMDEV 173

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 N YE+L+  F S+  + A +F TP  V  L   ++              I   Y
Sbjct: 174 DH--FGNTYEYLLSEFASDTGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAY 223

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L    N V   G ++KI      +GQE++  T+ +     ++R +   P  
Sbjct: 224 DPACGSGSLLIKLANKV---GKYNKI------YGQEVKTATYNLARMNFILRGV---PFS 271

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            L  +++ G TL   L   +   F   ++NPPF +KW   ++  +    N       P L
Sbjct: 272 KL--DLRSGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNP-----YPSL 324

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL H+     +  + G  A++   S  + + +    E +IR+++++ + I+
Sbjct: 325 APKSYADFAFLQHML--FHVNKDNGIIASVF--SLGILSRKNPKAEEDIRKYIVDENYID 380

Query: 389 AIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            I+ LP +LF+ T+I + + +   N+ T ++R  + +INAT  + +     KK+  ++D+
Sbjct: 381 TIIFLPPNLFYNTSIESCIIVARKNKPTNDKR--IFMINATKEFQN----AKKQNTLSDE 434

Query: 448 QRRQILDIYVS-RENGKFSRMLDY 470
              +I   +   RE   FS+ + Y
Sbjct: 435 NINRIFSAWKEKREEENFSKYISY 458


>gi|325125903|gb|ADY85233.1| HsdM [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 376

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 130/275 (47%), Gaps = 41/275 (14%)

Query: 133 LYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+    S I++      DR V+  +YE+ +++F S    G  +F TPR +V     ++
Sbjct: 131 LGKVVDLISDIDVGSKESQDRDVLGRVYEYFLQQFASAEGRGGGEFYTPRSIVKTLVEMI 190

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P   R +YDP CG+GG    +   V +   H      L  +G+E  P T
Sbjct: 191 ----------EPYKGR-VYDPCCGSGGMFVQSEEFVKE---HQGRIDDLAVYGEESNPTT 236

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKD 308
             +    + IR +++D          QG T + D+  G  F Y L+NPPF  K W  EK 
Sbjct: 237 WKLAKMNLAIRGIDND------LGPHQGDTFANDMHKGTHFDYILANPPFNIKDWGGEKL 290

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           KD            R+  G+P  S+ +  ++ H+ +KL+  P+  G+A  VL++  L   
Sbjct: 291 KDDA----------RWKYGVPPESNANYAWMEHIISKLQ--PD--GKAGFVLANGALSTS 336

Query: 369 RAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTN 402
           R    E  IR+ +LE+D I+AIVALP  ++ F T+
Sbjct: 337 R--KEELAIRKAVLEDDKIDAIVALPGANVLFNTD 369


>gi|322388270|ref|ZP_08061874.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|321140942|gb|EFX36443.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
          Length = 533

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 146/323 (45%), Gaps = 43/323 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYD 211
           ++ + YE+LI +F ++  + A +F TP+ V  L T  A L   D   F        T+YD
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDQEGF--------TIYD 226

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            T G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +    
Sbjct: 227 ATMGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE---- 275

Query: 272 LSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            ++ +    TL +D  T +   F   L NPP+  KW      +     +     FG   P
Sbjct: 276 -NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFL----NDPRFSPFGKLAP 330

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ 
Sbjct: 331 Q-SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDT 383

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D   
Sbjct: 384 VIGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHI 436

Query: 450 RQILDIYVSREN-GKFSRMLDYR 471
            +IL+ Y S E   KF+ +  Y 
Sbjct: 437 EKILEAYKSHEEMDKFAHLASYE 459


>gi|269103361|ref|ZP_06156058.1| type I restriction-modification system M subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163259|gb|EEZ41755.1| type I restriction-modification system M subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 889

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 142/311 (45%), Gaps = 45/311 (14%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           PD ++   YE+LI+ F     +   +F TP +VV L   +L           P     +Y
Sbjct: 160 PD-LLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVEIL----------EPAEGMEIY 208

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+GG L  + N+V + G + K   +    GQE    T ++C   M++         
Sbjct: 209 DPTCGSGGMLIQSRNYVQETGGNVKKIHLF---GQEDNGGTWSICKMNMILHGTG----- 260

Query: 271 DLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
               +I+ G TL+  L   K      F   ++NPPF + ++K  D   KE  N     F 
Sbjct: 261 --GADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKK-ADMQLKERFN----TFM 313

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   K +D  ++F+ H+   L+      G+AA+V+    LF    G+ E   R+  +E  
Sbjct: 314 PESGKKAD--LMFVQHMVASLK----ANGKAAVVMPHGVLFR---GAEERTCRQDFIERG 364

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++EA++ LP  LF+ T I   + +L N+   ++R  V  INA   +     EGK +  + 
Sbjct: 365 ILEAVIGLPQGLFYGTGIPACVLVL-NKAGCKKRDSVLYINADREY----REGKNQNSLR 419

Query: 446 DDQRRQILDIY 456
            +   +I  +Y
Sbjct: 420 PEDIEKITSVY 430


>gi|304387862|ref|ZP_07370036.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338127|gb|EFM04263.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 514

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 201/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L  TL  R         S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+K  L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTKPKLKDSKPFDAVVSNPPYSINWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKD---NTDIQFIDASSFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|322392309|ref|ZP_08065770.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus peroris ATCC 700780]
 gi|321144844|gb|EFX40244.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus peroris ATCC 700780]
          Length = 533

 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 144/321 (44%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          T+YD T
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGRENQEGFTIYDAT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +       HK P  +V  GQEL   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKKY------SHK-PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      +     +     FG   P+ 
Sbjct: 277 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFM----ADPRFSPFGKLAPQ- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 438

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE   KF  +  Y 
Sbjct: 439 ILEAYKSREEIDKFVHLASYE 459


>gi|319898180|ref|YP_004136377.1| type i restriction-modification system methyltransferase subunit
           [Haemophilus influenzae F3031]
 gi|317433686|emb|CBY82073.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3031]
          Length = 514

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 198/484 (40%), Gaps = 76/484 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA--------- 111
              D+++  +K  GY  Y +  +    +  GS  N   +L+       ++A         
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L
Sbjct: 182 YLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A          H I       GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGN 282

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S     
Sbjct: 283 TLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  +L
Sbjct: 338 FILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 391 FFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 443

Query: 458 SREN 461
            +E+
Sbjct: 444 DKED 447


>gi|227539167|ref|ZP_03969216.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240849|gb|EEI90864.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 513

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 146/323 (45%), Gaps = 44/323 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  ++E+ + +F     +    F TP+ +V+L   +L          +P   + +YD  
Sbjct: 153 VLGFVFEYFLGQFADAEGKKGGQFYTPQSIVNLLVEIL----------APEAEKRVYDGA 202

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   + +   H K    +   GQE  P T+ +    + IR +++       
Sbjct: 203 CGSGGMFVQSERFI-EIHEHRKGK--ISIFGQESNPTTYKLAKMNLAIRGIDA------- 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I+ G TL  D F   +  Y ++NPPF        +  +      E  ++  G+P   +
Sbjct: 253 -KIELGDTLMNDKFPELKVDYVIANPPF--------NVSDYNINKAETHKWKYGIPPTGN 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  +L H  +KL   P G   A IVL++  + +  A  G+  IR+ ++E DL++ +VAL
Sbjct: 304 ANYAWLQHFVSKL--APYG--TAGIVLANGSMSSEIATEGQ--IRKEMIEADLVDCMVAL 357

Query: 394 PTDLFFRTNIATYLWILS-----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           P+ LF+ T I   LW L+     N K   R  ++  I+A +L T I    K+R + + D 
Sbjct: 358 PSQLFYNTQIPACLWFLARNKEGNSKLRNRNHEILFIDARELGTMISR--KQRELTDTDI 415

Query: 449 RRQILDIYVSRENGKFSRMLDYR 471
            R     +  R   KF+   DY+
Sbjct: 416 ARVAATYHNWRSPEKFAT--DYK 436


>gi|254520681|ref|ZP_05132737.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA]
 gi|226914430|gb|EEH99631.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA]
          Length = 518

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 205/480 (42%), Gaps = 72/480 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----ECAL--------------- 48
            SL   +W  A  L G  + ++F   IL     R L     E AL               
Sbjct: 16  GSLQTKLWDIANTLRGSMEASEFKNYILGLIFYRYLSENVEERALKLLEEDNVTYEKAWE 75

Query: 49  -EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
            E  R A++E+ +   G  I+ +   +V       T ++ + TL      +  ES +   
Sbjct: 76  DEEYREALQEELVNDIGYFIEPKYLFRVLLRGI-ETGDFDIETLEEA-INDITESTLGHE 133

Query: 108 SD-NAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           S+ +   +F+D D  ST    +   ++ ++ K+  + + I          ++ + YE+LI
Sbjct: 134 SEEDFDHLFDDMDLKSTKLGKDVKSRSEIIGKVMGSIASIPFKFGDSEIDILGDAYEYLI 193

Query: 164 RRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +F +   + A +F TP+ V   LA  + +D  D         ++ +YDPTCG+G  L  
Sbjct: 194 GQFAANAGKKAGEFYTPQQVSRILAKIVTMDKKD---------LKNVYDPTCGSGSLLLR 244

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       K   +   +GQE    T+ +    M++  +     +D   NI+   TL
Sbjct: 245 V----------SKEANVRTFYGQEKVSTTYNLARMNMILHGV---SYKDF--NIKNDDTL 289

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   +F   ++NPP+   W    D ++ E        +G   PK S     F+ H+
Sbjct: 290 ENPQHKDMKFEAIVANPPYSANWSAKADFLDDER----FSAYGKLAPK-SKADFAFIQHM 344

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRT 401
             +L    +  G  A+VL    LF G A   E  IR++L+E  ++++A++ LP ++FF T
Sbjct: 345 IYQL----DDNGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNVLDAVIGLPANIFFGT 397

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-----RIINDDQRRQILDIY 456
           +I T + +  N + +  +  +  I+A++ +   +N+   R     +IIN  + R+ +D Y
Sbjct: 398 SIPTVILVFKNNRKD--KENILFIDASNDFEKGKNQNLLRDEDVEKIINTIRNREAIDKY 455


>gi|294670041|ref|ZP_06734998.1| type I restriction-modification system, M subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291308162|gb|EFE49405.1| type I restriction-modification system, M subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 437

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 191/463 (41%), Gaps = 74/463 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T   A L   IWK A+++ G     DF + +L  TL  R         S     Y+
Sbjct: 9   MMKSTQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTDYM 60

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y +  + +++     N   N       
Sbjct: 61  QAGDSSIDYAAMSDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIF 120

Query: 100 --LESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDR- 153
             +ES  + +    + + +F+DFD +S+      A    ++     G+E L      D  
Sbjct: 121 IAIESSASGYPSEQDIRGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVEELDFGNFEDHH 180

Query: 154 --VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+LI  + +   +   +F TP++V  L   L +   + + K        +YD
Sbjct: 181 IDLFGDAYEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYD 232

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A     +    H I       GQE+   T+ +    M +  +  +    
Sbjct: 233 PACGSGSLLLQAKKQFDE----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYN---- 282

Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I+ G TL+   L  GK F   +SNPP+   W    D            RF P   L
Sbjct: 283 -QFHIELGDTLTNPKLKDGKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVL 336

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E
Sbjct: 337 APKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVE 389

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            ++AL  +LF+ T+IA  + +LS  K       +Q I+A+  +
Sbjct: 390 TVIALAPNLFYGTSIAVNILVLSKHKDNT---DIQFIDASGFF 429


>gi|309804936|ref|ZP_07698995.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165749|gb|EFO67973.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LactinV 09V1-c]
          Length = 535

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 151/312 (48%), Gaps = 49/312 (15%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ ++ F    ++   +F TP DVV L  A++ +P +            LYDP CG+G
Sbjct: 172 VYEYFLKEFAVNATKEEGEFYTPHDVVKLIAAMI-EPFEG----------RLYDPACGSG 220

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
           G    +   V        +  I V +GQE E  T+ +    + +R         +S N+ 
Sbjct: 221 GMFIQSAELVK--SKQGNLNSINV-YGQEKEAATYRLAKMNLALR--------GISHNLG 269

Query: 277 -QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDG 334
               S+ + DL  G  F Y ++NPPF  K   D++      KN    R+   G P  S+ 
Sbjct: 270 DTNDSSFTHDLHKGLYFDYVMANPPFNLKGWYDENL-----KND--ARWADYGTPPESNA 322

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +++H+ + L+ P NG   A  +L++  L +    S   EIR+ L++ND +EAI+ LP
Sbjct: 323 NYAWILHILSHLK-PSNG--VAGFLLANGALND----SDTLEIRKKLIQNDKVEAIIVLP 375

Query: 395 TDLFFRTNIATYLWILSNRKTEER------RGKVQLINATDL--WT--SIRNEGKKRRII 444
            +LF  T+I+  LWIL+  K   +      R +   I   DL  WT  +++ E KK+  +
Sbjct: 376 RELFITTDISVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTWTENAVKGENKKKVRL 435

Query: 445 NDDQRRQILDIY 456
           + +Q ++  +IY
Sbjct: 436 SAEQIQRAANIY 447


>gi|306826261|ref|ZP_07459595.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431537|gb|EFM34519.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 519

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 120/264 (45%), Gaps = 31/264 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+LI  + S   +   +F TP+ V  L   +++     L K     I  +YDP 
Sbjct: 175 LFGDAYEYLISNYASNAGKSGGEFFTPQSVSKLLARIVM-----LGKNEKNKINKIYDPA 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A        + H I      +GQE+   T+ +    M +  +  D      
Sbjct: 230 CGSGSLLLQAKKQF----NEHIIEDGF--YGQEINMTTYNLARMNMFLHNINYDKF---- 279

Query: 274 KNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G+TL        K F   +SNPP+  KW    D            RF P   L  
Sbjct: 280 -SIERGNTLLDPKHVNDKPFDAIVSNPPYSIKWIGSDDPTLINDD-----RFAPAGVLAP 333

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  + L    +  GRAAIV      + G A   E +IR++L++N+ +EA+
Sbjct: 334 KSKADFAFIMHSLSYL----SNKGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVEAV 386

Query: 391 VALPTDLFFRTNIATYLWILSNRK 414
           + LP +LFF T+IAT + IL+  K
Sbjct: 387 IQLPDNLFFGTSIATCILILAKNK 410


>gi|295101615|emb|CBK99160.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 514

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 147/344 (42%), Gaps = 52/344 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ +  F  +  +   +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTLVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   V +   H      +  +GQ+  P T 
Sbjct: 190 ---------QPFKGR-VYDPCCGSGGMFVQSAKFVEN---HSGNINDISIYGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDK 309
            +    + IR +E D    L K      T   D     R  Y ++NPPF    W  E+ K
Sbjct: 237 KLAQMNLAIRGIEPD----LGK--YAADTFLDDQHPTMRADYIMANPPFNLSNWGAEQLK 290

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V          R+  G+P  S+ +  +L H+     L P  GGR  +VL++  L    
Sbjct: 291 DDV----------RWQYGMPPASNANFAWLQHMI--YHLAP--GGRMGMVLANGSL--SS 334

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S RK  +R GK   I+A  
Sbjct: 335 QSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKRK--KRAGKTLFIDARK 392

Query: 430 LWTSIR------NEGKKRRIINDDQR-----RQILDIYVSRENG 462
           +   +        +G K    N+D       ++I D Y +  NG
Sbjct: 393 MGVMVSRKLRELTDGTKEEYKNEDGTSKNDIKKIADTYNAYVNG 436


>gi|46580119|ref|YP_010927.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449535|gb|AAS96186.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233887|gb|ADP86741.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 506

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 168/403 (41%), Gaps = 51/403 (12%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA--RL 127
           E FV     SFY   E              L +   +       +F+D  F+ST      
Sbjct: 72  ERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFNSTKLGDDK 131

Query: 128 EKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +K  +L  + ++FS  EL+  P  + +  ++ N YE LI+ F +   + A +F TP +V 
Sbjct: 132 QKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGEFYTPPEVS 191

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+          +P     + DP CG+   L      + D   + K       +G
Sbjct: 192 QLIAELV----------NPQEGDEICDPACGSASLLMKCAKLIKDRFGNRK----YALYG 237

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNP 299
           QE    T ++    M +     D  R     I+ G TL   L        K F   ++NP
Sbjct: 238 QEAIGSTWSLAKMNMFLH--SEDNHR-----IEWGDTLRNPLLLDGDDHLKHFDIVVANP 290

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF   KW  +    ++       GRF  G+P  + G   F++H+   L+    G GR  +
Sbjct: 291 PFSLDKWGHEAAEADR------FGRFRRGIPPKTKGDYAFILHMIETLK---PGTGRMGV 341

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF     S E EIR+ L++ +L++ ++ LP  LF+ T I   + +    K +  
Sbjct: 342 VVPHGVLFRA---SSEGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKNKKD-- 396

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              V  I+A+  +     +GK +  + D+  +++LD   +RE+
Sbjct: 397 -NNVLFIDASREY----QDGKNQNFLRDEDIQKVLDTAKARES 434


>gi|324992013|gb|EGC23935.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK405]
          Length = 533

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 39/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +      A          T+YD T
Sbjct: 175 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQI------AFLGREDQQGFTIYDAT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A        SH   P  +   GQEL   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKKF-----SHQ--PQTVQYFGQELNTSTYNLARMNMILHGVPVE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +    TL +D  T +   F   L NPP+  KW      +     +     FG   P+ 
Sbjct: 277 QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFL----NDPRFSPFGKLAPQ- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGFYHLK---QDNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I+ D    +
Sbjct: 386 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIMTDAHIEK 438

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL+ Y SRE   KFS +  Y 
Sbjct: 439 ILEAYKSREEIDKFSHLASYE 459


>gi|154685169|ref|YP_001420330.1| type I restriction-modification system methyltransferase subunit
           like protein [Bacillus amyloliquefaciens FZB42]
 gi|154351020|gb|ABS73099.1| type I restriction-modification system methyltransferase subunit
           like protein [Bacillus amyloliquefaciens FZB42]
          Length = 523

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 182/425 (42%), Gaps = 73/425 (17%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGS 65
           S+   +W +A  L G  + +++  V+L    L+      E  ++ +    +EKY      
Sbjct: 11  SMEETLWDSANKLRGSVEASEYKHVVLGLIFLKFASDKFEERKAELLDEGKEKY------ 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-----------KAI 114
            +D+  F     Y+  N    S ++  S    N  +  IA   D A           K  
Sbjct: 65  -VDMVEF-----YTMKNVFYLSETSRWSYLVENAKQEDIALKIDTALFTVEKNNPALKGA 118

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  +S     + K   L     N + I+   D   D ++  IYE+ + +F     +G 
Sbjct: 119 LPDNYYSRLNLDVSKLASLIDTINNINTIK---DKQQD-IVGRIYEYFLSKFALAEGKGK 174

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ +V+L  A +L+P              +YDP CG+GG    ++  +    SH 
Sbjct: 175 GEFYTPKSIVNL-IAEMLEPYKG----------KIYDPACGSGGMFVQSVKFIE---SHQ 220

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
                +  +GQE    T+ +    + IR         +S N+  G T +   F  +    
Sbjct: 221 GNKKDISIYGQEYTTTTYKLAKMNLAIR--------GISANL--GETAADTFFNDQHKDL 270

Query: 291 RFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  + ++NPPF +K W  + +  +           G  +P   + +  +++++ +KL   
Sbjct: 271 KADFIMANPPFNQKQWRAENELTDDPR------WAGYEVPPRGNANYAWILNIVSKL--- 321

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G A  +L++  L     G  E +IR+ L+ENDL+E+I+ LP ++F+ TNI+  LWI
Sbjct: 322 -SENGVAGFLLANGAL---SGGGDEYKIRKKLIENDLVESIIVLPQNMFYTTNISVTLWI 377

Query: 410 LSNRK 414
           L+  K
Sbjct: 378 LNKNK 382


>gi|93006185|ref|YP_580622.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92393863|gb|ABE75138.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 529

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 175/410 (42%), Gaps = 52/410 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKYLAFGGSNIDLE 70
           +W  A  L G  + +++  ++L    L+ +    E  R  +     EK++        ++
Sbjct: 21  LWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHINM------VQ 74

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAIFEDFDFSSTIA 125
           ++ K   +     S +S     +      L+     S I   + + K    D  FS    
Sbjct: 75  AYTKDNVFYLPEESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGL 134

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
              K   L  +  N   I  +P+   +  +  +YE+ + +F +   +G  +F TP+ VV+
Sbjct: 135 TASKLAALIDVVNNIDTIG-NPE---EDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVN 190

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L  A +++P              +YDP CG+GG    ++  +    SHH     +  +GQ
Sbjct: 191 L-IAEMVEPYQG----------KIYDPCCGSGGMFVQSIKFIE---SHHGNTKDVSIYGQ 236

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK- 304
           E    T+ +    + IR + S+   D++ +     T  KD     +  + ++NPPF +K 
Sbjct: 237 EYTSTTYKLAKMNLAIRGISSN-LGDVAAD-----TFFKDQHEDLKADFIMANPPFNQKD 290

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W    + V+           G   P   + +  +++H+ +KL    +  G A  VL++  
Sbjct: 291 WRASDELVDDPR------WAGYPTPPTGNANYAWILHMISKL----SEHGTAGFVLANGS 340

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +      SGE EIR  +++NDL++ ++ALP  LF+ T I   LW +S  K
Sbjct: 341 M--STTTSGEGEIREQIIKNDLVDCMIALPGQLFYTTQIPVCLWFISKDK 388


>gi|281358278|ref|ZP_06244761.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis
           vadensis ATCC BAA-548]
 gi|281315368|gb|EFA99398.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis
           vadensis ATCC BAA-548]
          Length = 500

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 44/326 (13%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I++        ++   YE+ +  F  +  +   +F TP  VV      L        
Sbjct: 137 FTNIKMKDHGDTRDILGRTYEYCLAMFAEQEGKKGGEFFTPACVVKTLVEFL-------- 188

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K   G +   YDP CG+GG    +   V +   H      +  +GQ+  P T  +    +
Sbjct: 189 KPYNGRV---YDPACGSGGMFVQSAKFVEN---HQGNINNISVYGQDSNPTTWKMAQMNL 242

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD--KDAVEKEH 316
            IR +E++             T   D     +  + ++NPPF    W  D  KD V    
Sbjct: 243 AIRGIEANLGN------YNADTFFNDCHPTLKADFVMANPPFNLSDWGADRLKDDV---- 292

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+  G+P   + +  +L H+ +   L PNG  +  +VL++  L       GE E
Sbjct: 293 ------RWKYGVPPSGNANFAWLQHMIH--HLAPNG--KIGMVLANGSL--SSQSGGEGE 340

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ ++E+DL+  IVA+PT LF+ T I   LW L   K  +++GK   I+A  + T +  
Sbjct: 341 IRKNIIEDDLVSCIVAMPTQLFYTTQIPVSLWFLCRNK--KQKGKTCFIDARKMGTMV-- 396

Query: 437 EGKKRRIINDDQRRQILDIYVSRENG 462
             +K R++ D   +++   + + ENG
Sbjct: 397 -SRKLRMLTDADIQELAKTFDAYENG 421


>gi|294660605|ref|NP_853464.2| type I restriction-modification system methyltransferase subunit
           [Mycoplasma gallisepticum str. R(low)]
 gi|284812268|gb|AAP57032.2| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. R(low)]
 gi|284930962|gb|ADC30901.1| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. R(high)]
          Length = 875

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 177/387 (45%), Gaps = 56/387 (14%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSG 142
           +ST  ++  R+ LE Y  SF D    IF+D    + I +L     E++  ++ IC   + 
Sbjct: 111 VSTALNSFERSILEKYEESFKD----IFKDL--QAGIQKLGNTAYERSEAIWNICNLINK 164

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I +      D ++  +YE+LI  F +   + A +F TP +V  L + +  +    L   S
Sbjct: 165 IPITSKQDYD-ILGFVYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGLKNVS 223

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 +YDPT  +G  L      +     + KI      + QE+   T+ +    +L+ 
Sbjct: 224 ------IYDPT--SGSLLITLGRELKKIDKNVKIQY----YAQEVIDTTYNITRMNLLMN 271

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            + S     ++   + G TL +D         +  KR    +SNPP+   W         
Sbjct: 272 DVHS-----VNMFAKCGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNT------- 319

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           E+K  +  RF  GL   S   + FL+H    LE      G   IVL    LF  R GS E
Sbjct: 320 ENKEND-PRFRYGLAPKSKSELAFLLHSLYHLE----DHGILTIVLPHGVLF--RGGS-E 371

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L+ +D I+AI+ LP+++FF T I T + +L   KT++ +  V  I+A+  +T  
Sbjct: 372 LQIRQNLISHDHIDAIIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFTK- 430

Query: 435 RNEGKKRRIINDDQRRQILDIYVSREN 461
             EG K ++ + D  R I D + +RE+
Sbjct: 431 --EGNKNKLQSSDIVR-IYDAFSARED 454


>gi|297545264|ref|YP_003677566.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843039|gb|ADH61555.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 514

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 126/266 (47%), Gaps = 38/266 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ +  F  +  +   +F TP  VV L   ++           P   R ++DP 
Sbjct: 168 VLGRVYEYFLSEFARKEGKRGGEFFTPSTVVKLLVEMI----------QPLHGR-VFDPC 216

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    ++  V    +H      +  +GQE  P T+ +C   + IR +E+D      
Sbjct: 217 CGSGGMFVQSIRFVE---AHAGKKGDISIYGQESNPTTYRLCKMNLAIRGIEAD------ 267

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+ G++ + D F   R  Y L+NPPF    W  D+ A +         R+  GLP  S
Sbjct: 268 --IRLGNSFTDDQFKDLRADYILANPPFNDSAWGADRLANDV--------RWKYGLPPDS 317

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H      L P G   A  VL++  +    + + E EIR+ ++E++L++ +VA
Sbjct: 318 NANYAWIQHFI--YHLAPKG--VAGFVLANGSMTT--SNNAEYEIRKRIIEDNLVDCMVA 371

Query: 393 LPTDLFFRTNIATYLW-ILSNRKTEE 417
           LP  LF+ T I   LW I   R+T+E
Sbjct: 372 LPPQLFYTTGIPACLWFIRKGRETKE 397


>gi|254470667|ref|ZP_05084070.1| type I restriction-modification system, M subunit [Pseudovibrio sp.
           JE062]
 gi|211959809|gb|EEA95006.1| type I restriction-modification system, M subunit [Pseudovibrio sp.
           JE062]
          Length = 504

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 39/355 (10%)

Query: 114 IFEDFDFSSTIA--RLEKAGLLYKICKNFSGIE--LHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F+   F+S       +K  +L  + ++F+  E  L P  V +  V+   YE+LI RF +
Sbjct: 117 VFQGISFNSNNLGDEQQKNDILRHVLEDFARDEMNLRPSRVGNLDVIGGAYEYLISRFAA 176

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   L+          +P     + DPTCG+G  L      + 
Sbjct: 177 TAGKKAGEFYTPAEVSELMAELV----------TPQEGDEICDPTCGSGSLLMKCGRQI- 225

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              S           GQE    T A+    M +   E++ + +    I+     +++   
Sbjct: 226 ---SARTGKKTYALFGQEAIGSTWALAKMNMFLHG-ETNHQIEWGDTIRNPKLRTREDAL 281

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   ++NPPF      DK  +E+  K+   GRF  GLP  + G   F+ H+   L+ 
Sbjct: 282 -RKFDVVVANPPF----SLDKWGIEQAEKDA-FGRFSRGLPPKTKGDYAFISHMVETLK- 334

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  GR A+V+    LF G   S E +IR+ L+E +L++A++ LP  LFF T I   + 
Sbjct: 335 --DDTGRMAVVVPHGVLFRG---SSEGKIRKALIEENLLDAVIGLPEKLFFGTGIPAAIL 389

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           I    K +     V  I+A+  +     EG  +  +N+    +I+  Y +R+  +
Sbjct: 390 IFKKGKGDN---SVLFIDASREYV----EGTNQNQLNETHIAKIVKTYTARQTAE 437


>gi|38234849|ref|NP_940616.1| putative type I restriction/modification system DNA methylase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38201113|emb|CAE50837.1| Putative type I restriction/modification system DNA methylase
           [Corynebacterium diphtheriae]
          Length = 535

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 131/284 (46%), Gaps = 42/284 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F     +   +F TP+ VV     +L +P +            +YDP 
Sbjct: 178 LLGEVYEYFLDKFAKAEGKRGGEFYTPQPVVRTLVEIL-EPTEG----------RVYDPC 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   +       +    +  +GQEL   T  +    + I  + S    +  
Sbjct: 227 CGSGGMFVQAEKFLE---VTKRDRSNIAVYGQELNERTWRMAKMNLAIHAISSSGLGE-- 281

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              + G T ++D+  G +  Y ++NPPF  K W           +N E  R+  G+P   
Sbjct: 282 ---RWGDTFARDIHAGTKMDYIMANPPFNIKDW----------IRNEEDARWKYGVPPAK 328

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL+      G A +V+++  + +    SGE EIR+ ++E+D++  ++A
Sbjct: 329 NANFAWIQHIISKLK----DHGEAGVVMANGTMTS--QSSGEGEIRKNMVEDDVVSCVIA 382

Query: 393 LPTDLFFRTNIATYLWILSNRKTE------ERRGKVQLINATDL 430
           LP  LF  T I   +W  +  K+       +RRG+V LI+A  L
Sbjct: 383 LPAQLFRGTGIPVCVWFFAKDKSAGVGGSVDRRGEVLLIDARQL 426


>gi|78776896|ref|YP_393211.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78777791|ref|YP_394106.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497436|gb|ABB43976.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78498331|gb|ABB44871.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 530

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 132/282 (46%), Gaps = 27/282 (9%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TL 209
           P     ++YE  I R      +      T + +VHL   +      + F E+ G  +  +
Sbjct: 156 PKEQYKDLYEATISRMKKLSGDLTGQHFTQKSIVHLMCEV------SKF-EAEGYDKLAI 208

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPTCGT   L ++ ++  +    +KI  I V +GQEL  +T  +    + I  L+    
Sbjct: 209 YDPTCGTASMLMESAHYFYN---KNKIENIEV-YGQELHGQTWLLAKIFLEISSLDG-KS 263

Query: 270 RDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + +   I  G+TL+   F         F + ++NPPFG  W+ + D + +   + +   F
Sbjct: 264 QGIKNTIAYGNTLTNPAFANGINGDTSFDFIIANPPFGVDWKHNYDEIVQNMSSKKSDFF 323

Query: 325 GPG-------LPKISDGSMLFLMHLAN--KLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                      PK SDG  LF+ H+ N  K E   N    AAI+ SS+ +  G A S ES
Sbjct: 324 VVKDEKNKVVTPKKSDGQFLFMQHIINLMKSEKRRNKHAHAAIISSSTLISTGNATSSES 383

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +IR+ +     + A++  P+ +F  T+I++++W L +  +E+
Sbjct: 384 KIRKEIFNTGFVSAVLEQPSAMFTNTDISSHIWFLDSDPSEK 425


>gi|253699076|ref|YP_003020265.1| type I restriction-modification system, M subunit [Geobacter sp.
           M21]
 gi|251773926|gb|ACT16507.1| type I restriction-modification system, M subunit [Geobacter sp.
           M21]
          Length = 827

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 152/326 (46%), Gaps = 45/326 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F +E  +    F TP +V  +   ++      + + +     + YD
Sbjct: 141 DDILGDAYEYLMRHFATESGKSKGQFYTPSEVSRVVAKVI-----GISRANIVASTSAYD 195

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L   +    + G H      +   GQE +  T  +    M++    +     
Sbjct: 196 PTCGSGSLL---LKVAEEAGKH------ITLEGQEKDVTTAGLARMNMILHHFPT----- 241

Query: 272 LSKNIQQGSTLSKDLFT-GKR---FHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP 326
              NI  G+TL+   F  GK+   + Y ++NPPF  K W     +      N +  RF  
Sbjct: 242 --ANILSGNTLAAPKFKDGKQLRTYDYVVANPPFSDKTW-----STGLLPANDDFERFAW 294

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P    G   +L+H+   ++      G+AA +L    LF G A   E+ IR+ L+ +  
Sbjct: 295 GVPPTKQGDYAYLLHIIRSMK----STGKAACILPHGVLFRGNA---EATIRKQLVRSGY 347

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++ I+ LP +LF+ T I   + +L       R+G V +I+A+  +     +G K R+ + 
Sbjct: 348 LKGIIGLPANLFYGTGIPACILVLDKENAAGRKG-VFMIDASKGFI---KDGNKNRLRDQ 403

Query: 447 DQRRQILDIYVSRENG--KFSRMLDY 470
           D  + I+D +  +++   +++R++ +
Sbjct: 404 DIHK-IVDTFARQDDSDPRYARLVPF 428


>gi|308062171|gb|ADO04059.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Cuz20]
          Length = 529

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 163/364 (44%), Gaps = 55/364 (15%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 137 ENVKGLFADLDVNSNKLGSSHKNRVEK---LNKILQAIGGMQLGDYQKSGID-VFGDAYE 192

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 193 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLL 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 245 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHG 292

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  D + +    K     RF P   L   +   +
Sbjct: 293 DTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPILINDK-----RFSPAGVLAPKNAADL 347

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ ++I+ ++ALP +
Sbjct: 348 AFTMHMLSYL----SNTGTCAIVEFPGVLYRGNA---EAKIREHLVKENVIDCVIALPDN 400

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y
Sbjct: 401 LFFGTSIATCILVLKKNKPDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILQTY 453

Query: 457 VSRE 460
             R+
Sbjct: 454 TERK 457


>gi|302381005|ref|ZP_07269466.1| type I restriction-modification system, M subunit [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311226|gb|EFK93246.1| type I restriction-modification system, M subunit [Finegoldia magna
           ACS-171-V-Col3]
          Length = 522

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 159/366 (43%), Gaps = 46/366 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRFGS 168
            +F+DFD +S       A    K+CK   G+ +++   V D       + YE+L+  + S
Sbjct: 137 GLFDDFDVNSNKLGSTVAKRNEKLCKLLDGVADMNLGDVKDHDIDAFGDAYEYLMTMYAS 196

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP DV  L T L               I  +YDP CG+G  L  A   + 
Sbjct: 197 NAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGSGSLLLKAEKILG 248

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLF 287
                 KI      +GQE+   T+ +C   M +  +  D       NI    TL +   +
Sbjct: 249 ----RDKIRNGF--YGQEINITTYNLCRINMFLHDIGFDKF-----NIACEDTLIAPAHW 297

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANK 345
             + F   +SNPP+  KW  + + +          RF P   L   S   + F+MH  + 
Sbjct: 298 DDEPFELIVSNPPYSIKWAGNDNPLLINDP-----RFSPAGVLAPKSKADLAFIMHSLSW 352

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       G AAIV     ++ G A   E +IR++L++N+ ++ ++ LP +LFF T+IAT
Sbjct: 353 LA----SNGTAAIVCFPGIMYRGGA---EKKIRKYLIDNNFVDCVIQLPPNLFFGTSIAT 405

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKF 464
            + ++   KT+    K   I+AT     + N  K    +  D   +I++ + +R E   F
Sbjct: 406 CIMVMKKNKTD---NKTLFIDATKECIKVTNNNK----LTADNMDKIVECFANRSEIEHF 458

Query: 465 SRMLDY 470
           S +  Y
Sbjct: 459 SHLATY 464


>gi|152979298|ref|YP_001344927.1| type I restriction-modification system, M subunit [Actinobacillus
           succinogenes 130Z]
 gi|150841021|gb|ABR74992.1| type I restriction-modification system, M subunit [Actinobacillus
           succinogenes 130Z]
          Length = 505

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 58/379 (15%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRV-----MSNIY 159
             D  K++F+D  F++     EK    +L ++ ++F+  EL  D  P RV     + N Y
Sbjct: 113 LKDAGKSVFQDIAFNTDKLGEEKQKNTILRELLEDFAKPEL--DLKPSRVGTLDIIGNAY 170

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI+ F +   + A +F TP +V  L   LL           P +  ++ DP CG+G  
Sbjct: 171 EYLIKNFAASGGQKAGEFYTPPEVSDLIAELL----------DPQIGDSICDPACGSGSL 220

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-----RLE-SDPRRDLS 273
           L      V               +GQE    T ++    M +      R+E  D  R+  
Sbjct: 221 LMKCGRKVQQNYQSKNYEL----YGQEAIGSTWSLAKMNMFLHSEDNHRIEWGDTIRNPK 276

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +QG+ L  D+ T        +NPPF   KW  ++   ++        RF  GLP  +
Sbjct: 277 LTDKQGNLLKFDIVT--------ANPPFSLDKWGYEEAGQDR------FQRFVRGLPPKT 322

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G   F+ H+   L+   +G GR  +V+    LF G A   E +IR+ L+E +L++A++ 
Sbjct: 323 KGDYAFISHMIATLK---DGTGRMGVVVPHGVLFRGAA---EGKIRQKLIEENLLDAVIG 376

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF+ T I   + I    KT++    V  I+A+  + +    GK +  +  +   +I
Sbjct: 377 LPEKLFYGTGIPAAILIFRKDKTDD---SVLFIDASQEFKA----GKNQNTLTSENITKI 429

Query: 453 LDIYVSREN-GKFSRMLDY 470
              Y +R+   K++ + D+
Sbjct: 430 HRTYQARQAVEKYAYLADF 448


>gi|312879436|ref|ZP_07739236.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas
           paucivorans DSM 12260]
 gi|310782727|gb|EFQ23125.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas
           paucivorans DSM 12260]
          Length = 507

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 190/438 (43%), Gaps = 44/438 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGG 64
           S + L  ++W  A  L G     D+ + I P    +RL C +  E    A+ E       
Sbjct: 3   SQSQLEAYLWGAATLLRGTIDAGDYKQFIFPLLFYKRL-CDVYDEELADALEESGGDREY 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           + +  +   ++   + +  +   +  +G    ++ L +   +  D    +F D  +++  
Sbjct: 62  AALPEQHRFQIPEDAHWKATRTQVKNVGKA-IQDALRAIETANPDTLYGVFGDAQWTNKD 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
              ++  +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T R VV
Sbjct: 121 RLPDR--MLRELIEHFSSQTLSLAHCPEDELGVGYEFLIKQFADDSGHTAAEFYTNRTVV 178

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL T +L        +  PG   ++YDPTCG+ G L  A+ H+      +K    L  +G
Sbjct: 179 HLMTEML--------EPKPG--ESIYDPTCGSAGMLLSAVAHLK---RQNKEWRNLRLYG 225

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKR---FHYCLSNPP 300
           QE    T A+    + +  +E D R      + +G TL+   F  G R   F   L+NPP
Sbjct: 226 QERNLLTSAIGRMNLFLHGIE-DFR------LVRGDTLAGPAFVEGDRLMQFDVVLANPP 278

Query: 301 FG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           +  K+W++D  + +        GR   G P        F  H+   ++      GR AI+
Sbjct: 279 YSIKQWDRDAWSADP------WGRNIYGTPPQGRADYAFWQHIIKSMK---EDTGRCAIL 329

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
                LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +ERR
Sbjct: 330 FPHGVLFRNE----ELAMREKLVGHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKERR 385

Query: 420 GKVQLINATDLWTSIRNE 437
           GKV  +NA +  T  R +
Sbjct: 386 GKVLFLNAVNEVTRERAQ 403


>gi|289435130|ref|YP_003465002.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171374|emb|CBH27916.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 871

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 195/451 (43%), Gaps = 69/451 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + + N +W  A+ L G  +   +   IL    ++            V +KY       I+
Sbjct: 6   SEIYNQLWAAADKLRGGVEPARYKNYILTMLFVK-----------YVSDKYKTSDDWEIE 54

Query: 69  L---ESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYI--ASFSDN--AKAIFEDFDF 120
           +    SF  +  + F  +  E   +++ +   +NNL+  I  A F  N   +        
Sbjct: 55  IPADSSFDDIVKHKFQTDIGEKINTSISAIAEKNNLKGIIDIADFDSNELGEGKTHVDKV 114

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S  +A  +K  L +   KN +G         D ++ + YE+L+R+F  +  +    F TP
Sbjct: 115 SDLVAIFQKPELDF--TKNRAG--------GDDILGDAYEYLMRKFAQDSGKSKGQFYTP 164

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +  A ++  D A    S  M  T+YDP CG+G  L  A    AD      +  I 
Sbjct: 165 GEVSRV-MARVIGLDKAT---SSSM--TVYDPACGSGSLLIRA----ADVA----LVEIT 210

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCL 296
           + +GQE +P T  +    +++           +  IQ+G+TL+    K+    KRF Y +
Sbjct: 211 I-YGQEYDPSTAGLARMNLVLHN-------KGAGEIQRGNTLADPKWKENNQLKRFDYIV 262

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPPF  K   D    ++    G     G G+P   +G   + +H+   L+      G+A
Sbjct: 263 VNPPFSDKSWTDGTLPDQ---YGRYSEVGYGVPPEKNGDYAWFLHVLKSLK----AKGKA 315

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L    LF G     E EIR+ ++++  I+ I+ LP ++FF T I   + I+      
Sbjct: 316 AIILPHGVLFRGNT---EGEIRKKIIDHGYIKGIIGLPANIFFGTGIPACIIIVDKEDAV 372

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           ER G + +I+A+  +     EG K R+   D
Sbjct: 373 EREG-IFMIDASQDFVK---EGNKNRLREQD 399


>gi|315652290|ref|ZP_07905282.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315485413|gb|EFU75803.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 525

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 172/388 (44%), Gaps = 48/388 (12%)

Query: 94  TNTRNNLE-SYIASFSDNA-KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
            N  N +E S I   S+ A K +F+D D +S       +EK   L  I K  + I+ +  
Sbjct: 118 ANIFNAIEGSAIGFLSEEAIKGLFKDLDTTSDRLGATVVEKNKRLCDILKGIAEIDFNDF 177

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
              D     + YE+LI  + S   +   +F TP+ V  L   L++D            I 
Sbjct: 178 QSNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMD--------GKTSIN 229

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDPTCG+G  +             H I       GQE+      +    M +  +  +
Sbjct: 230 KVYDPTCGSGSLILQMKKQF----EEHIIEEGFF--GQEINMTNFNLARMNMFLHNVNYN 283

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                + +I++G TL   L   ++ F   +SNPP+  KW  D D      +     RF P
Sbjct: 284 -----NFSIKRGDTLLNPLHNDEKPFDAIVSNPPYSIKWVGDGDPTLINDE-----RFAP 333

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N
Sbjct: 334 AGKLAPKSYADYAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-EKTIRQYLVDN 386

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ ++ LP +LFF T+IAT + +++  KTE    KV  I+A+  +    N      ++
Sbjct: 387 NFIDCVIQLPENLFFGTSIATCVLVMAKNKTE---NKVLFIDASKEFKKETN----NNVL 439

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYR 471
            +     IL+ +  R++ + F++ +D +
Sbjct: 440 EEKNIESILNTFRERKDKEYFAKYVDKK 467


>gi|184200169|ref|YP_001854376.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201]
 gi|183580399|dbj|BAG28870.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201]
          Length = 521

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 195/477 (40%), Gaps = 71/477 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T  A +L   +W  A+ L G+ + +++  V+L    L+ +    E  R  ++ +  A G 
Sbjct: 8   TKPAKTLEQTLWDAADKLRGNQEPSEYKHVVLGLVFLKYVSDRFEERREQLKGELAAEGI 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
               +ESF++       +  EY+   +    +      Y+ S +   + I +  D +  +
Sbjct: 68  KPERIESFLE-------DRDEYASQNVFWVPSLARW-GYVQSVAKQPE-IGQQIDQAMDL 118

Query: 125 ARLEKAGLLYKICKNFS-------------------GIELHPDTVPDRVMSNIYEHLIRR 165
              E   L   + +N+                    G     D   D V+  +YE+ + +
Sbjct: 119 IEKENPSLRGVLPRNYGRDGLDKRRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQ 178

Query: 166 F-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F G E  + A  F TPR VV     +L           P   R +YDP  G+GG    + 
Sbjct: 179 FAGKETGKDAGAFYTPRSVVRTLVEML----------EPYKGR-VYDPAAGSGGMFVQSA 227

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             V   G   K   I V +GQE    T  +    + +R +E+D             + ++
Sbjct: 228 EFVKAHGG--KRTDISV-YGQEFTDTTWKLAKMNLALRGIEAD------MGTHSADSFTE 278

Query: 285 DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           DL    R  + ++NPPF    W   K A +         R+  G P   + +  ++ H  
Sbjct: 279 DLHPDLRADFVIANPPFNVSDWWDAKLADDP--------RWKYGTPPKGNANFAWVQHFL 330

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +   L P G   A  VL++  L +    SGE E R+ L+E  L++ IVA+P  LFF T I
Sbjct: 331 H--HLAPYG--TAGFVLANGSLSS--KSSGEGETRQRLVEAGLVDCIVAMPDKLFFNTGI 384

Query: 404 ATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              LW +S  +       R+G+V  I+A  L    R E +K R++++D   +I   Y
Sbjct: 385 PVSLWFVSKGRDGNGHRARKGEVLFIDARKLG---RMESRKLRVLDNDDIGKIAGTY 438


>gi|300780280|ref|ZP_07090136.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300534390|gb|EFK55449.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 395

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 122/260 (46%), Gaps = 36/260 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + RF S   +   +F TPR VV     +L +P +            +YDP 
Sbjct: 171 LLGEVYEYFLARFASAEGKRGGEFYTPRPVVRTLVEIL-EPTEG----------RVYDPC 219

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   +    +H + P  +  +GQEL   T  +    + I  L +   + L 
Sbjct: 220 CGSGGMFVQAEKFLE---AHDRDPSAIAIYGQELNERTWRMARMNLAIHALSA---KGLG 273

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +  + G T ++D+  G    Y L+NPPF  K W ++ D            R+  G+P   
Sbjct: 274 E--RWGDTFARDIHPGVEMDYVLANPPFNIKDWVRNTDDT----------RWMYGVPPEK 321

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL   P G   A +V+++  + +    SGE EIR+ +LE+D++  ++ 
Sbjct: 322 NANFGWMQHIISKLS--PQG--EAGVVMANGTMTSNT--SGEGEIRKNMLEDDIVSCVIT 375

Query: 393 LPTDLFFRTNIATYLWILSN 412
           LP  LF  T I   +W  + 
Sbjct: 376 LPAQLFRATGIPVCVWFFAG 395


>gi|330874480|gb|EGH08629.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 418

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 82/134 (61%), Gaps = 9/134 (6%)

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + S LF G AGSGES IRR L+ENDL++AI+ LP +LF+ T I TY+W+LS+ K  +RRG
Sbjct: 3   NGSSLFTGDAGSGESNIRRHLIENDLLDAIIQLPNNLFYNTGITTYIWLLSSNKPVQRRG 62

Query: 421 KVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYV--------SRENGKFSRMLDYR 471
           KVQLI+A+ L+  +R N G K      +    I   Y+        +  +G  +++ D R
Sbjct: 63  KVQLIDASLLYRKLRKNLGNKNCEFAPEHIELITQTYLDVASLDRPAGGDGIAAQVFDNR 122

Query: 472 TFGYRRIKVLRPLR 485
            FGY ++ + RP R
Sbjct: 123 DFGYHKVSIERPDR 136



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 11/100 (11%)

Query: 575 TDVNGEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           +D  GEWI    +++L + E++P  +SI  +F  EV PHV +A+I+         E  ++
Sbjct: 311 SDKAGEWITYESNSDLRDSESIPLADSIHHFFKAEVQPHVEEAWINL--------ESVKI 362

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI+FN++FY++QP R + ++  E+  +E Q   L+ E+
Sbjct: 363 GYEISFNKYFYKHQPLRSMDEVAREIVALEQQAEGLIAEI 402


>gi|89075002|ref|ZP_01161447.1| type I restriction-modification system, M subunit [Photobacterium
           sp. SKA34]
 gi|89049241|gb|EAR54805.1| type I restriction-modification system, M subunit [Photobacterium
           sp. SKA34]
          Length = 521

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 188/465 (40%), Gaps = 61/465 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE---- 70
           +W   +   G    + +   +L    L+ +    +  +  V E    FG +   +E    
Sbjct: 31  VWSACDTFRGTVDPSIYKDFVLTMLFLKYIS---DVRQDKVEELTAQFGDNQAMIEAMLA 87

Query: 71  --SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
             SF    G +F++  E+       +     L +         K +F+D  F++     E
Sbjct: 88  SQSFKIPTGSTFWDLYEHRFEAGNGSRIDQALHAIEEENGTKLKGVFQDISFNTDKLGDE 147

Query: 129 KA--GLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           K    +L  + ++F    + L P  V    V+ N YE LI+ F +   + A +F TP +V
Sbjct: 148 KQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEFLIKHFAASSGKSAGEFYTPPEV 207

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             L + +L           P     + DP CG+G  L      +       K   +    
Sbjct: 208 SDLLSIIL----------EPQQGDEICDPACGSGSLLMKCGKQIQKNFGGSKQYALF--- 254

Query: 244 GQELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
           GQE    T ++    M +      R+E  D  R+       G  L  D+ T        +
Sbjct: 255 GQEAIGSTWSLAKMNMFLHGEDNHRIEWGDTIRNPKLQDANGGLLHFDVVT--------A 306

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPF   KW  +    E +H     GRF  G+P  + G   F+ H+   L+ P  G  R 
Sbjct: 307 NPPFSLDKWGHED--AESDH----FGRFRRGIPPKTKGDYAFISHMIETLK-PETG--RM 357

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF     S E +IR+ L++ +L++ ++ LP  LFF T I   + +    KT+
Sbjct: 358 GVVVPHGVLFRA---SSEGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILLFKKHKTD 414

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
               KV  I+A+  + S    GK +  +  D  ++I+D Y +R+N
Sbjct: 415 ---NKVLFIDASREFKS----GKNQNALTSDNIQKIVDTYKARKN 452


>gi|271968782|ref|YP_003342978.1| Site-specific DNA-methyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270511957|gb|ACZ90235.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptosporangium roseum DSM 43021]
          Length = 544

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 136/311 (43%), Gaps = 44/311 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+   YE+ + RF     + A +F TP  VV L   +L +P +            +YDP 
Sbjct: 178 VLGETYEYFLERFARAEGKRAGEFYTPASVVRLLVEIL-EPYEG----------RVYDPC 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   V           I V +GQE    T  +    + I  +  DP+    
Sbjct: 227 CGSGGMFVQAGKFVTAHAGRDHTHDIAV-YGQETNERTWRLAKMNLAIHGM--DPK---G 280

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T   D     +  + ++NPPF    W +          N    R+  G+P  S
Sbjct: 281 VGDRWADTFDDDKLPDLKADFVMANPPFNLSDWAR----------NVGDRRWMYGVPPQS 330

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+  KL       G A +VL++  + + +  SGE EIR  L++ DL+  +VA
Sbjct: 331 NANYAWLQHIVFKL----GERGSAGVVLANGSMASKQ--SGEGEIRTKLVQADLVACMVA 384

Query: 393 LPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           LP +LF  T I   LW L+  KT        ERRG+V  I+A +L T +    +  RI+ 
Sbjct: 385 LPGNLFRTTAIPACLWFLTKDKTPQGAKALAERRGEVLFIDARNLGTMV---DRTERILT 441

Query: 446 DDQRRQILDIY 456
           D+   +I D Y
Sbjct: 442 DEDLARIADTY 452


>gi|150401947|ref|YP_001329241.1| N-6 DNA methylase [Methanococcus maripaludis C7]
 gi|150032977|gb|ABR65090.1| N-6 DNA methylase [Methanococcus maripaludis C7]
          Length = 501

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 143/311 (45%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +   +F TP  +V L   ++           P   R +YDP 
Sbjct: 153 ILGRVYEYFLGQFASAEGKKGGEFYTPDCIVKLLVEMI----------EPYKGR-VYDPC 201

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     KI  I + +GQE  P T  +    + IR +E+D      
Sbjct: 202 CGSGGMFVQSEKFVIEHSG--KINDISI-YGQESNPTTWKLANMNLAIRGIEAD------ 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+ G +   DL    +  + L+NPPF    W  +    +K        R+  G+P   
Sbjct: 253 --IKFGDSFHNDLHPDLKADFILANPPFNISDWGGNLLTDDK--------RWKHGVPPTG 302

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ + L       G A  VL++  + +    S E EIR  ++   L++AIVA
Sbjct: 303 NANFAWVQHMIHHLSTT----GIAGFVLANGSMSSNT--SSEGEIRTNIINAGLVDAIVA 356

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP+ LF+ T I   LW +  R  E R+G+   I+A ++   I    +K R + ++  ++I
Sbjct: 357 LPSQLFYNTQIPACLWFI-RRGKEVRKGETLFIDAREMGEMI---SRKNRSLTEEDIKKI 412

Query: 453 LDIYVSRENGK 463
             +Y S  NG+
Sbjct: 413 AGVYHSWRNGE 423


>gi|295136495|ref|YP_003587171.1| type I restriction-modification system DNA methylase [Zunongwangia
           profunda SM-A87]
 gi|294984510|gb|ADF54975.1| type I restriction-modification system DNA methylase [Zunongwangia
           profunda SM-A87]
          Length = 540

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 196/480 (40%), Gaps = 76/480 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---------LAFGGS 65
           +WK A +L G      +   ILP   L+ +    E  +  +++K          L     
Sbjct: 16  LWKAANELRGAVAENQYKDYILPLIFLKHISERYEMRKDEIKKKLNDQTSDYYTLDEEEQ 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------------LESYIASFSDNAKA 113
           N  LE   +    + Y   E +       N   +            L+  +A+   + K 
Sbjct: 76  NYVLEDPDEYLSKNVYIIPEKATFQYLQDNAEQDNIKVLVDEAFDILDETLAANRPDLKG 135

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I       S +   + AGL+  +       + +PD+    ++  +YE+ I +F      G
Sbjct: 136 ILPRIFVKSQLTAKQVAGLINLLSNPKLSEKENPDS---DILGRVYEYYIGKFAIAEGSG 192

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  F TP  +V L   L+ +P +            ++D  CG+GG    ++  +   G  
Sbjct: 193 AGQFFTPGSIVRLLVELI-EPYEG----------KIFDAACGSGGMFVQSLKFLQAHGGD 241

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K   I   +GQE    T  +C   + +R        DLS +++ G +L +D F   +  
Sbjct: 242 KKNISI---YGQERYDGTLRLCKMNLALR--------DLSFDVRLGDSLLQDKFPDLKAD 290

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS------MLFLMHLANKLE 347
           + + NPPF       +D  E + +      FGP     +DG+        F  HL++K  
Sbjct: 291 FIIVNPPFNVSQWHPEDLPENDPR-----LFGPKEEFTTDGNANYMWMQTFWHHLSDK-- 343

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G AA+V+++  + +     GE  +R+ ++E ++++ IV LP  LF  T I   +
Sbjct: 344 ------GTAAVVMANGAMTSN--NKGEKNVRQLMVEKNMVDCIVRLPDKLFLTTGIPACI 395

Query: 408 WILS-NRKTEE-----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +ILS NR  ++     R G++  I+ + + T    E +K R+ N+    +I D Y +  N
Sbjct: 396 FILSKNRDGKDGIHRKRTGEILFIDTSKMGTM---ESRKLRVFNEQDINKITDTYHAWRN 452


>gi|288563204|pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
 gi|288563205|pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
          Length = 542

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 142/320 (44%), Gaps = 39/320 (12%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T +      A          TLYD T 
Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLXTQI------AFLGREDKQGFTLYDATX 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +        + P  +V  GQEL   T+ +     ++  +  +     ++
Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARXNXILHGVPIE-----NQ 278

Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +    TL +D  T +   F   L NPP+  KW     A      +     FG   PK S
Sbjct: 279 FLHNADTLDEDWPTQEPTNFDGVLXNPPYSAKWS----ASSGFXDDPRFSPFGKLAPK-S 333

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 334 KADFAFLLHGYYHLK---QDNGVXAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 387

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +    ++GK + I  D    +I
Sbjct: 388 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEF----DKGKNQNIXTDAHIEKI 440

Query: 453 LDIYVSREN-GKFSRMLDYR 471
           L+ Y SRE+  KF+ +  + 
Sbjct: 441 LNAYKSREDIDKFAHLASFE 460


>gi|160946887|ref|ZP_02094090.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270]
 gi|158447271|gb|EDP24266.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270]
          Length = 526

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 165/382 (43%), Gaps = 59/382 (15%)

Query: 105 ASFSDNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL------HPDTVPDR 153
           A   D+ K +FED D +S     T+A  EK   L  I    + I        H D   D 
Sbjct: 133 AESEDDIKGLFEDVDTTSNRLGGTVA--EKNKRLRDILTGIAQINFENFKDNHIDAFGDA 190

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
                YE+LI  + S   +   +F TP+ V  L   +++D  +         I  +YDPT
Sbjct: 191 -----YEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKEK--------INKVYDPT 237

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L        D    H I       GQE+      +    M +  +  +     +
Sbjct: 238 CGSGSLLLQMKKQFDD----HIIEEGFF--GQEINMTNFNLARMNMFLHNVNYN-----N 286

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL   L   ++ F   +SNPP+  KW  + D            RF P   L  
Sbjct: 287 FSIKRGDTLLNPLHNDEKPFDAIVSNPPYSIKWIGEADPTLINDV-----RFAPAGKLAP 341

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N+ I+ +
Sbjct: 342 KSYADYAFIMHSLSYL----SSNGRAAIVCFPGIFY--RKGA-ERTIRKYLIDNNFIDCV 394

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T+IAT + +++  KTE    KV  I+A+  +    N      I+ +    
Sbjct: 395 IQLPENLFFGTSIATCVLVIAKNKTE---NKVLFIDASKEFKKETN----NNILEEKNIS 447

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
            I++ + +R + ++     YRT
Sbjct: 448 AIVEEFRNRTDKEYFSRYVYRT 469


>gi|255324373|ref|ZP_05365491.1| type I restriction-modification system, M subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298560|gb|EET77859.1| type I restriction-modification system, M subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 374

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 53/316 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  + YE+L+R + S       +  TP++V  +  A+      A+ + S   IR  YDP 
Sbjct: 32  VFGDAYEYLLRMYASNAGRSGGEHFTPQEVSEILAAI------AVNRRS--TIRRAYDPC 83

Query: 214 CGTGGFL-----TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+G  L        ++++ D             +GQE+ P  HA+    M +  +  + 
Sbjct: 84  TGSGSLLFRFAKVLGIDNITDG-----------LYGQEINPTNHALARMNMFLHGVPFE- 131

Query: 269 RRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326
                 +I++G TL   L    + F   +SNPP+ +KW    D            RF P 
Sbjct: 132 ----KFDIKRGDTLENPLHLEVQPFDAIVSNPPYSQKWPGKDDVTLINDP-----RFAPA 182

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F MH+ + LE      G AAIV     L+ G A   E  IR++L++N+
Sbjct: 183 GALAPKSYSDLAFTMHMLHHLE----EDGVAAIVEFPGILYRGGA---EKTIRQYLVDNN 235

Query: 386 LIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++A++ LP +LFF T+I+T + +L  NR+T +    V  ++A   +  ++N  K    +
Sbjct: 236 FVDAVIQLPPNLFFGTSISTVILVLKKNRETND----VLFVDAAAHF--VKNGAKN--TL 287

Query: 445 NDDQRRQILDIYVSRE 460
           N+D ++ ILD+Y + E
Sbjct: 288 NEDNQQAILDLYFNHE 303


>gi|88707229|ref|ZP_01104916.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
 gi|88698522|gb|EAQ95654.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
          Length = 262

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 130/285 (45%), Gaps = 38/285 (13%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P+  + N YE+LI++F  +    A++F T R +VHL   +L           P     +
Sbjct: 1   MPEDELGNGYEYLIKQFADDSGHTAQEFYTNRTLVHLMAQML----------EPKAGEII 50

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPTCGTGG L   +  V       +   +   +GQEL   T A+    +++  +     
Sbjct: 51  YDPTCGTGGMLISCLAEVKRTSGDTRTMGL---YGQELINITAAIARMNLVLHGVSD--- 104

Query: 270 RDLSKNIQQGSTLSKD-LFTGKR---FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF 324
                +I+ G+TL +  L  G R   F   L+NPP+  KKW +         ++ + GR 
Sbjct: 105 ----FDIRSGNTLHEPALIEGDRLKTFDVVLANPPYSIKKWNR------VAWQSDQWGRN 154

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P        F  H+   ++ P  G  R AI+     LF       E+++R  L+E 
Sbjct: 155 FLGTPPQGRADYAFFQHILKSMD-PQTG--RCAILFPHGVLFRNE----EADMRTKLIEA 207

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           DL+E ++ L  +LF+ + +   + I    K  ERRGK+  INA +
Sbjct: 208 DLLECVLGLGPNLFYNSPMEACVLICRTSKLSERRGKILFINALN 252


>gi|302190880|ref|ZP_07267134.1| type I restriction-modification system DNA methylase [Lactobacillus
           iners AB-1]
          Length = 432

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 150/324 (46%), Gaps = 45/324 (13%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I++  +   + ++   YE+ I +F  +  +   +F TP  +V    ++L   D+      
Sbjct: 72  IDMSDNKQSEDLLGRTYEYCIAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----- 126

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 +YD  CG+GG    +   + A  G+   I      +GQE   +T  +    M I
Sbjct: 127 -----RVYDCCCGSGGMFVQSAKFIRAHSGNRGSISI----YGQEANADTWKMAKMNMAI 177

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKN 318
           R +++D          Q  T + DL    +  + L+NPPF    W ++K  D V      
Sbjct: 178 RGIDAD------LGPYQADTFTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV------ 225

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G P   + +  ++ H+ +   L PNG  +  +VL++  L +   G GE  IR
Sbjct: 226 ----RWKYGTPPAGNANYAWIQHMIH--HLAPNG--KIGLVLANGALSSQNCGEGE--IR 275

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + ++E+DLIE I++LP  LF+  +I   LW +S  K ++++GK   I+A  +   +    
Sbjct: 276 QKIIEDDLIEGIISLPPKLFYSVSIPVTLWFIS--KNKKQKGKTVFIDARKMGHMV---D 330

Query: 439 KKRRIINDDQRRQILDIYVSRENG 462
           +K R   ++  +++ D + + +NG
Sbjct: 331 RKHRDFTEEDIQKLADTFEAFQNG 354


>gi|84387345|ref|ZP_00990365.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01]
 gi|84377794|gb|EAP94657.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01]
          Length = 505

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 173/402 (43%), Gaps = 44/402 (10%)

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           ++ +SF    G +F++  E        +     L +   +     K +F+D  F++    
Sbjct: 70  METQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQDISFNTDKLG 129

Query: 127 LEKA--GLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F TP 
Sbjct: 130 DEKQKNDILRHLLEDFGKETLNLRPSRVGTLDVIGNAYEYLIKHFAAGSGKSAGEFYTPP 189

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  L + +L           P    T+ DP CG+G  L      V +  +  K   +  
Sbjct: 190 EVSDLLSIIL----------EPQQGDTICDPACGSGSLLMKCGKQVQNNFAGSKQYALF- 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNP 299
             GQE    T ++    M +   E + R +    I+      KD   G   H+    +NP
Sbjct: 239 --GQEAIGSTWSLAKMNMFLHG-EDNHRIEWGDTIRNPKLQDKD---GGLLHFDVVTANP 292

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF   KW  +      +  N   GRF  G+P  + G   F+ H+   L+ P  G  R  +
Sbjct: 293 PFSLDKWGFE------DAGNDHFGRFRRGIPPKTKGDYAFISHMIETLK-PQTG--RMGV 343

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF     S E +IR+ L++ +L++ ++ LP  LFF T I   + +   +K +  
Sbjct: 344 VVPHGVLFRA---SSEGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILLFKKQKDDN- 399

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             KV  I+A+  + S    GK +  +  D  ++I+D Y +RE
Sbjct: 400 --KVLFIDASREFKS----GKNQNQLTPDNIQKIVDTYKARE 435


>gi|320536229|ref|ZP_08036275.1| type I restriction-modification system, M subunit [Treponema
           phagedenis F0421]
 gi|320146931|gb|EFW38501.1| type I restriction-modification system, M subunit [Treponema
           phagedenis F0421]
          Length = 526

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 168/392 (42%), Gaps = 60/392 (15%)

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELH 146
            N   ++ES    F   ++ K +FED D +S     T+A  EK   L  I    S I   
Sbjct: 120 ANIFKSIESSAVGFKSENDIKGLFEDVDTTSNRLGGTVA--EKNSRLADILIGISEINFG 177

Query: 147 PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                D     + YE+LI  + S   +   +F TP+ V  L   L++D            
Sbjct: 178 NFQDNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMD--------GKTN 229

Query: 206 IRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           +  +YDPTCG+G  L         H+ D G            GQE+      +    M +
Sbjct: 230 VNKVYDPTCGSGSLLLQMKKQFEEHIIDEGFF----------GQEINMTNFNLARMNMFL 279

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +  +     + +I++G TL   L   ++ F   +SNPP+  KW  D D          
Sbjct: 280 HNVNYN-----NFSIKRGDTLLNPLHNNEKPFDAIVSNPPYSIKWIGDDDPTLIND---- 330

Query: 321 LGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             RF P   L   S     F+MH  + L    +  GRAAIV      +  R G+ E  IR
Sbjct: 331 -ARFAPAGKLAPKSYADYAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-ELTIR 382

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++L++N+ I+ I+ LP +LFF T+IAT + +++  KTE    K   I+A   +    N  
Sbjct: 383 KYLVDNNFIDCIIQLPENLFFGTSIATCVLVMAKNKTE---NKTLFIDAGKEFKKETN-- 437

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469
               I+ D    +I+  +  R N + FSR++D
Sbjct: 438 --NNILEDKNIEKIVAEFRDRTNIEYFSRLVD 467


>gi|158315560|ref|YP_001508068.1| N-6 DNA methylase [Frankia sp. EAN1pec]
 gi|158110965|gb|ABW13162.1| N-6 DNA methylase [Frankia sp. EAN1pec]
          Length = 564

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 141/336 (41%), Gaps = 48/336 (14%)

Query: 141 SGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           +G+     T P R V+  +YE+ + RF     +   +F TP  VV L   +L +P +   
Sbjct: 186 AGVPTEAATRPARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVL-EPYEG-- 242

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                    +YDP CG+GG    A   V A  G  H     +  +GQE    T  +    
Sbjct: 243 --------RVYDPCCGSGGMFVQAEKFVVAHRGLTHSGD--IAVYGQESNERTWRLAKMN 292

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHK 317
           + I  +  D       + +   T   D     R  + L+NPPF    W +  D       
Sbjct: 293 LAIHGITGD------LSARWDDTFRNDRHPDLRADFILANPPFNMSDWARTVDDQ----- 341

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                R+  G P   + +  +L H+  KL       G A +V+++  + + +  SGE EI
Sbjct: 342 -----RWRYGTPPTGNANFAWLQHIIAKL----GSRGTAGVVMANGSMSSKQ--SGEGEI 390

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERRGKVQLINATDL 430
           R  L+E DL+  ++ALP  LF  T I   LW  +  K +       ERRG+   I+A D+
Sbjct: 391 RAALVEADLVACMIALPPQLFRTTQIPACLWFFAKDKGQLGARWLAERRGETLFIDARDM 450

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            T I    +  RI+ D    +I D Y +    K +R
Sbjct: 451 GTMI---DRTERILTDGDLEKITDTYRAWRGAKSAR 483


>gi|124265198|ref|YP_001019202.1| type I restriction-modification system, M subunit [Methylibium
           petroleiphilum PM1]
 gi|124257973|gb|ABM92967.1| type I restriction-modification system, M subunit [Methylibium
           petroleiphilum PM1]
          Length = 528

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 127/283 (44%), Gaps = 38/283 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ +  F S   +    F TPR +V    A+L          +P   + +YDP 
Sbjct: 164 VLGQVYEYFLGMFASAEGKRGGQFYTPRSIVKTLVAVL----------APHHGK-VYDPC 212

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + +  GQE  P T  +    + IR +      D +
Sbjct: 213 CGSGGMFVQSEEFILSHGG--KLGDVAI-FGQEANPTTWRLAAMNLAIRGI------DFN 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +   T +K+ F   R  + L+NPPF     W        + H          G P  
Sbjct: 264 LGREPADTFTKNQFPDLRADFILANPPFNISDWWHASLTGDARWHY---------GDPPQ 314

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+ + L+     GGRA IVL++  + + +  + E +IR   +E D++E ++
Sbjct: 315 GNANYAWLQHMLHHLKP----GGRAGIVLANGSMSSSQ--NNEGQIRAATVEADVVEVMI 368

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           ALP  LFF T I   LW L   K  +RRG+V  I+A  L T I
Sbjct: 369 ALPGQLFFNTQIPACLWFLVKDK-RQRRGEVLFIDARKLATMI 410


>gi|304320736|ref|YP_003854379.1| type I restriction-modification system, M subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299638|gb|ADM09237.1| type I restriction-modification system, M subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 504

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 171/371 (46%), Gaps = 52/371 (14%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSG--IELHPDTVPD-RVM 155
           E+ IA   D    +F+D  F+S     E  K  LL ++ ++F+   + L P  +    ++
Sbjct: 107 EANIAKLRD----VFQDISFNSNKLGEEAHKNELLKELLEDFAKDKLNLRPSRIGKLDII 162

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N YE LI++F ++    A +F TP +V  L   L+          +P     + DPTCG
Sbjct: 163 GNAYEFLIKQFAADSGRKAGEFYTPPEVSELMAELV----------APKEGDEICDPTCG 212

Query: 216 TGGFLTDAMNHVADCGSHHKI----PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           +G  L         CG   +I          +GQE    T A+    M +   E + R +
Sbjct: 213 SGSLLMK-------CGKRVQIENKGSKKYALYGQEAIGSTWALAKMNMFLHG-EDNHRIE 264

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               I+    L  +  + K F   ++NPPF  +KW       +K        RF  G+P 
Sbjct: 265 WGDTIRNPKLLDGE-DSLKHFDVVVANPPFSLEKWGHGTAEGDK------FSRFRRGIPP 317

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F++H+   ++ P +G  R A+V     LF G   S E +IR+ L+E +L++A+
Sbjct: 318 KTKGDYAFILHMVETMK-PKSG--RMAVVAPHGVLFRG---STEGKIRQKLVEENLLDAV 371

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + IL  +K++     V  I+A+  + S    GK +  ++++   
Sbjct: 372 IGLPEKLFYGTGIPATILILRKKKSDRN---VLFIDASREFIS----GKNQNQLSNNHIA 424

Query: 451 QILDIYVSREN 461
           +I++ Y +R++
Sbjct: 425 KIVETYQARKS 435


>gi|226225587|ref|YP_002759693.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
 gi|226088778|dbj|BAH37223.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
          Length = 519

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 199/469 (42%), Gaps = 66/469 (14%)

Query: 7   SAASLANF-----IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           SAA+ AN      +W  A+ L  +    ++  V+L    L+ +  A E   + +  ++ A
Sbjct: 10  SAATSANIGFEAKLWAAADALRNNMDAAEYKHVVLGLIFLKYISDAFEIKHAELASQH-A 68

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            G    D + +   A   F+  +E     L +    N  +  + +  D+A A  E  D  
Sbjct: 69  DGADPEDPDEYR--ADNIFWVPAEARWQFLKA----NAPQPGVGTMVDDAMAAIER-DNP 121

Query: 122 STIARLEK----AGL----LYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSE 172
           S    L K     GL    L +I    S IEL       +  +  +YE+ + RF S   +
Sbjct: 122 SLKGVLPKDYARPGLDKQRLGQIINLVSDIELGSSADKSKDTLGRVYEYFLSRFASAEGK 181

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCG 231
               F TP  VV +   +L          +P   R +YDP CG+GG    +   + A  G
Sbjct: 182 SGGQFYTPSYVVRVLVEML----------APYKGR-VYDPCCGSGGMFVQSEKFIEAHAG 230

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K+  I + +GQE    T  +    + IR +++         I  G TL  D     +
Sbjct: 231 ---KLDDISI-YGQESNYTTWRLAKMNLAIRGIDA--------QIGHGDTLHDDKHPDLK 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF      D D   +  K+ +  R+  G P   + +  ++ H  + L   P 
Sbjct: 279 ADYVLANPPF-----NDSDWRGELLKDDQ--RWAYGAPPAGNANFAWVQHFIHHLS--PT 329

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G   A  VL++  + + +  SGE EIR+ ++E DL++ +VALP  LF+ T I   LW L+
Sbjct: 330 G--LAGFVLANGSMSSNQ--SGEGEIRKTIVEADLVDCMVALPGQLFYSTQIPVCLWFLA 385

Query: 412 ----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
               N +  +RRG V  I+A  L +      + RR + D     I D Y
Sbjct: 386 RNKRNGRFRDRRGHVLFIDARKLGSMAD---RVRRELTDADIANIADTY 431


>gi|307637539|gb|ADN79989.1| typeI restriction-modification system DNA-methyltransferase subunit
           M [Helicobacter pylori 908]
 gi|325996129|gb|ADZ51534.1| Type I restriction-modification system/DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
          Length = 581

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 166/367 (45%), Gaps = 61/367 (16%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 193 ENVKGLFADLDVNSNKLGSSHQNRVEK---LTKILQAIGGMQLGDYQQSGID-VFGDAYE 248

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG+G  L
Sbjct: 249 YLMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCGSGSLL 300

Query: 221 TDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQ 278
                 + D         +L  + GQE+   T+ +C   M +  +      + SK +I  
Sbjct: 301 LQFSKVLGD-------KNVLKGYFGQEINLTTYNLCHINMFLHDI------NYSKFHIAH 347

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAV----EKEHKNGELGRFGPGLPKISD 333
           G TL          F   +SNPP+  KW  D + +    E+  K G L       PK + 
Sbjct: 348 GDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMNDERFSKAGALA------PK-NA 400

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L    +  G AAIV     L+ G A   E +IR +L++ + I+ ++AL
Sbjct: 401 ADLAFTMHMLSYL----SNQGAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIAL 453

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF TNIAT + +L   K ++       I+A+  +     EGKK + +    R +IL
Sbjct: 454 PENLFFGTNIATCILVLKRNKKDDT---TLFIDASKEFVK---EGKKNK-LKAHNREKIL 506

Query: 454 DIYVSRE 460
             Y  R+
Sbjct: 507 QTYTERK 513


>gi|296119614|ref|ZP_06838172.1| type I restriction-modification system, M subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967497|gb|EFG80764.1| type I restriction-modification system, M subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 518

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 167/363 (46%), Gaps = 51/363 (14%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEH 161
           D+ K +F+D D +ST  RL     ++   L K+ +    + L    D   D V  + YE+
Sbjct: 128 DDLKGLFDDLDVNST--RLGNSVAKRNATLVKLLEAIGDLPLGDWSDNTID-VFGDAYEY 184

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   ++ TP++V  L T + +     + K S   +  +YDP  G+G  L 
Sbjct: 185 LMGMYASSAGKSGGEYYTPQEVSELLTRITV-----VGKTS---VNKVYDPAVGSGSLLL 236

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                +   G  +         GQE+   T+ +    M +  +          NI  G T
Sbjct: 237 KFEKVLGKGGVRNGY------FGQEINLTTYNLARINMFLHNVNY-----ADFNIALGDT 285

Query: 282 LSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L+    +  + F   +SNPP+  KWE D + V          R+ P   L   S   + F
Sbjct: 286 LTDPKHWDDEPFEAIVSNPPYSIKWEGDANPVLINDP-----RYSPAGVLAPKSKADLAF 340

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            MH+ + L +     G AAIV     L+  RAG+ E +IR++L++N+ I+AI+ LP DLF
Sbjct: 341 AMHILSWLAV----NGTAAIVSFPGVLY--RAGA-EKKIRKYLIDNNYIDAIIQLPPDLF 393

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L   K  ++   V  I+A++ +    N+ K    + ++ +  ILD ++ 
Sbjct: 394 FGTTIGTCIMVL---KKSKKDNSVLFIDASEQFVRSGNKNK----LAEENQATILDAFID 446

Query: 459 REN 461
           RE+
Sbjct: 447 RED 449


>gi|208434761|ref|YP_002266427.1| type I restriction enzyme M protein [Helicobacter pylori G27]
 gi|208432690|gb|ACI27561.1| type I restriction enzyme M protein [Helicobacter pylori G27]
          Length = 531

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 166/365 (45%), Gaps = 51/365 (13%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  D +     V  + YE
Sbjct: 143 ENVKGLFADLDVNSNKLGSSHKIRVEK---LTKILQAIGGMQL-GDYLKSGIDVFGDAYE 198

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 199 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLL 250

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + +K +I  G
Sbjct: 251 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYTKFHIALG 298

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            TL          F   +SNPP+  KW  D   + K+ +     + G   PK +   + F
Sbjct: 299 DTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNSPLLKDDE--RFRKAGVLAPK-NAADLAF 355

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LF
Sbjct: 356 TMHMLSYL----SNQGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLF 408

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+IAT + +L   K ++       I+A+  +     EGKK + +    R +IL  Y+ 
Sbjct: 409 FGTSIATCILVLKKNKKDDT---TLFIDASKEFVK---EGKKNK-LKAHNREKILQTYIE 461

Query: 459 RENGK 463
           R+  K
Sbjct: 462 RKEVK 466


>gi|148976278|ref|ZP_01813002.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
 gi|145964372|gb|EDK29627.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
          Length = 515

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 174/405 (42%), Gaps = 51/405 (12%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           +SF    G +F++  E        +     L +   +     K +F+D  F++     EK
Sbjct: 78  QSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQDISFNTDKLGDEK 137

Query: 130 A--GLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
               +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F TP +V 
Sbjct: 138 QKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPPEVS 197

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L + +L           P    ++ DP CG+G  L      V    +  K   +    G
Sbjct: 198 DLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQKNFAGSKQYALF---G 244

Query: 245 QELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           QE    T ++    M +      R+E  D  R+     ++G  L  D+ T        +N
Sbjct: 245 QEAIGSTWSLAKMNMFLHGEDNHRIEWGDTIRNPKLQDKEGGLLHFDVVT--------AN 296

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--GGR 355
           PPF   KW  +      +  N   GRF  G+P    G   F+ H+   L+    G  GGR
Sbjct: 297 PPFSLDKWGFE------DAGNDHFGRFRRGIPPKIKGDYAFISHMIETLKPASQGKKGGR 350

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +V+    LF  RA S E +IR+ L++ +L++ ++ LP  LFF T I   + I   +K 
Sbjct: 351 MGVVVPHGVLF--RASS-EGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILIFKKQKD 407

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +    KV  I+A+  + S    GK +  +  +  ++I+D Y +RE
Sbjct: 408 DN---KVLFIDASREFKS----GKNQNQLTPENIQKIVDTYKARE 445


>gi|34764861|ref|ZP_00145228.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27885799|gb|EAA23174.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 353

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T + L             +  +YDP CG+G 
Sbjct: 18  YEYLMGMYASNAGKSGGEYYTPQEVSELLTKITL--------VGKTEVNKVYDPACGSGS 69

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 70  LLLKFAKILGKNNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 118

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 119 GDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKSKAD 173

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L       G AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 174 LAFIMHSLSWLA----SNGTAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDGIIQLPD 226

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K      DD    I++ 
Sbjct: 227 NLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNKMTEKHIDD----IVEK 279

Query: 456 YVSRENGKF-SRMLDYR 471
           +  REN ++ S +++Y 
Sbjct: 280 FTKRENIEYISNLIEYE 296


>gi|148982142|ref|ZP_01816609.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
 gi|145960647|gb|EDK25994.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
          Length = 510

 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 176/403 (43%), Gaps = 52/403 (12%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           +SF    G +F++  E        +     L +   +     K +F+D  F++     EK
Sbjct: 78  QSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQDISFNTDKLGDEK 137

Query: 130 A--GLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
               +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F TP +V 
Sbjct: 138 QKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPPEVS 197

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L + +L           P    ++ DP CG+G  L      V +  S  K   +    G
Sbjct: 198 DLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQNNFSGSKQYALF---G 244

Query: 245 QELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           QE    T ++    M +      R+E  D  R+     ++G  L  D+ T        +N
Sbjct: 245 QEAIGSTWSLAKMNMFLHGEDNHRIEWGDTIRNPKLQDKEGGLLHFDVVT--------AN 296

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF   KW  +      +  N   GRF  G+P  + G   F+ H+   L+ P +G  R  
Sbjct: 297 PPFSLDKWGFE------DAGNDHFGRFRRGIPPKTKGDYAFISHMIETLK-PESG--RMG 347

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+    LF  RA S E +IR+ L++ +L++ ++ LP  LFF T I   + I   +K + 
Sbjct: 348 VVVPHGVLF--RASS-EGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILIFKKQKDDN 404

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              KV  I+A+  + S    GK +  +  +  R+I+D Y +RE
Sbjct: 405 ---KVLFIDASREFKS----GKNQNQLTPENIRKIVDTYKARE 440


>gi|148827354|ref|YP_001292107.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittGG]
 gi|148718596|gb|ABQ99723.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittGG]
          Length = 514

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 196/484 (40%), Gaps = 76/484 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA--------- 111
              D+++  +K  GY  Y +  +    +  GS  N   +L+       ++A         
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNLAANAGSNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + +   +   +F TP+ V  L   + +             +  +YDP  G+G  L
Sbjct: 182 YLISNYAANAGKSGGEFFTPQSVSKLIAQIAM--------HGQTSVNKIYDPAAGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A          H I       GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGN 282

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S     
Sbjct: 283 TLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  +L
Sbjct: 338 FILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 391 FFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 443

Query: 458 SREN 461
            +++
Sbjct: 444 DKQD 447


>gi|313672539|ref|YP_004050650.1| site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939295|gb|ADR18487.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 509

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 204/478 (42%), Gaps = 59/478 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +  S    +WK A+ L  +    ++  V+L    LR +  A E     +++   
Sbjct: 1   MAEQKQNIESFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISDAFEDLYEKLKKGEG 60

Query: 61  AFGGSNI-DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-------NAK 112
            + G++  D++ +   A   F+   E   S L +      +   I    D       + K
Sbjct: 61  EYSGADPEDVDEYK--AENVFFIPPEARWSYLKAHAKSPEIGKIIDRAMDLIEKENPSLK 118

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +         I  +   GL+  +  N +  E    T    ++ +++E+ + +F     +
Sbjct: 119 GVLPKVYARGNIDPISIGGLI-DLFNNMAINEAKEKT--SDILGHVFEYFLGQFALAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR VV L   +L           P   R ++DP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPRSVVELLVEML----------EPYKGR-VFDPCCGSGGMFVQSEKSVQE--H 222

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             KI  I + +GQE    T  +C   + IR ++S       K   +GS L+ D     + 
Sbjct: 223 QGKINDISI-YGQESNQTTWRLCKMNLAIRGIDSSQ----VKWNPEGSFLN-DAHKDLKA 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLPKISDGSMLFLMHLANKLEL 348
            + ++NPPF      D D       +GEL     R+  G+P   + +  ++ H      L
Sbjct: 277 DFVIANPPFN-----DSDW------SGELLRKDVRWKYGVPPEGNANYAWIQHFI--FHL 323

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            P+G  +A  VL+   L   +  + E EIR+ ++++D+I+ IV LP  LF  T I   LW
Sbjct: 324 SPSG--KAGFVLAKGSLTTKQ--NAEYEIRKNMIQDDIIDCIVNLPPKLFLNTQIPACLW 379

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKF 464
            +   KT  ++G++  I+A D+   I    +++R++ +D  R+I D Y    +E+G +
Sbjct: 380 FIRKNKT-TKKGQILFIDARDMGQLIN---RRQRVLTEDDIRKIADTYHKWQKEDGSY 433


>gi|254374065|ref|ZP_04989547.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548]
 gi|151571785|gb|EDN37439.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548]
          Length = 538

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 185/430 (43%), Gaps = 58/430 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGG 64
            +  S+   +W +A  L G  + +++  ++L    L+ +    E  R   + E   AF  
Sbjct: 8   ANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLITEGKEAF-- 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFED 117
             ID+  F  +    FY   E   + +     ++++        S I   + + K    D
Sbjct: 66  --IDMVEFYTMENV-FYLPEESRWTYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPD 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     + K   L     N + I    + +  RV    YE+ + +F     +G  +F
Sbjct: 123 NYFSRLGLDVSKLSSLIDTINNINTIADKGNDIVGRV----YEYFLSKFAIAEGKGKGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V+L  A +++P              +YDP CG+GG    ++  +     + K  
Sbjct: 179 YTPKSIVNL-IANMIEPYKG----------KIYDPACGSGGMFVQSIKFIEAHKGNKKDI 227

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYC 295
            I   +GQE    T+ +    + IR         +S N+      T  KD     +  + 
Sbjct: 228 SI---YGQEYTGTTYKLAKMNLAIR--------GISANLGDVPADTFFKDQHPDLKADFI 276

Query: 296 LSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF +K W    + ++           G  +P  S+ +  +++++ +KL    +  G
Sbjct: 277 MANPPFNQKDWRGANELLDDPR------WAGYDVPPKSNANYGWILNIVSKL----SQNG 326

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L++  L     G  E +IR+ L+ENDL+EAIV LP ++F+ T+I+  +WIL+  K
Sbjct: 327 VAGFILANGAL---SGGGEEYKIRKKLIENDLVEAIVILPRNMFYTTDISVTIWILNANK 383

Query: 415 TE---ERRGK 421
            +   E+ GK
Sbjct: 384 KQREFEQNGK 393


>gi|301168868|emb|CBW28459.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 10810]
          Length = 514

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 195/484 (40%), Gaps = 76/484 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYS--LSTLGST-NTRNNLESYIASFSDNA--------- 111
              D+++  +K  GY  Y +  +    +  GS  N   +L+       ++A         
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP+ V  L   + +             +  +YDP  G+G  L
Sbjct: 182 FLISNYAANAGKSGGEFFTPQSVSKLIAQIAM--------HGQTSVNKIYDPAAGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A          H I       GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGN 282

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S     
Sbjct: 283 TLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  +L
Sbjct: 338 FILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   QIL ++ 
Sbjct: 391 FFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQILKLFA 443

Query: 458 SREN 461
            +E+
Sbjct: 444 DKED 447


>gi|229553103|ref|ZP_04441828.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|258540282|ref|YP_003174781.1| type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|229313600|gb|EEN79573.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151958|emb|CAR90930.1| Type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 549

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 53/364 (14%)

Query: 112 KAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           + IF D +       SST AR +    + ++   F     + D     ++ ++YE+LI +
Sbjct: 139 RGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFE----YNDKQGRDILGDVYEYLIAQ 194

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     + A +F TP  V  +   L+     AL  +    I T+YDPT G+G  L    +
Sbjct: 195 FAGNSGKKAGEFYTPHQVSKVLAKLV-----ALGVQKDQEIFTVYDPTMGSGSLLLTVRD 249

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +        +  ++  HGQEL   T  +    +++  +   P  ++S  ++   TL  D
Sbjct: 250 ELPAT-----VKAVMF-HGQELNTTTFNLARMNLMMHNV---PYTNMS--LRNADTLEDD 298

Query: 286 LFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              G        + F   ++NPP+   W    D  E + K+     FG   PK S     
Sbjct: 299 WPDGVVGGVDSPRSFDAVVANPPYSIHW----DNSENKLKDPRFKPFGALAPK-SKADFA 353

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ H    L    N  G  AIVL    LF G A   E +IR+ ++E + ++A++ +P  L
Sbjct: 354 FVEHGLYHL----NDTGTMAIVLPHGVLFRGAA---EGKIRKAIIEKNYLDAVIGMPAGL 406

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +    +T      +  I+A++ +     +GK + I+ D    +I++ Y 
Sbjct: 407 FFSTGIPTVVLVFKKNRTNR---DIFFIDASNNF----EKGKNQNILRDSDIDKIIEAYS 459

Query: 458 SREN 461
            RE+
Sbjct: 460 KRED 463


>gi|167626409|ref|YP_001676909.1| type I restriction-modification system methyltransferase
           subunit-like protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596410|gb|ABZ86408.1| type I restriction-modification system methyltransferase subunit
           like protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 531

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 214/494 (43%), Gaps = 65/494 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +  S+   +W +A  L G  + +++  ++L    L+ +    E  R    E+ +A G  
Sbjct: 8   ANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERR----EQLIAEGKE 63

Query: 66  N-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFED 117
             ID+  F  +    FY   E   S +     ++++        S I   + + K    D
Sbjct: 64  AFIDMVEFYTMENV-FYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPD 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     + K   L     N + I    + +  RV    YE+ + +F     +G  +F
Sbjct: 123 NYFSRLGLDVSKLSSLIDTINNINTIADKGNDIVGRV----YEYFLSKFAIAEGKGKGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V+L  A +++P              +YDP CG+GG    ++  +     + K  
Sbjct: 179 YTPKSIVNL-IANMIEPYKG----------KIYDPACGSGGMFVQSIKFIEAHKGNKKDI 227

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYC 295
            I   +GQE    T+ +    + I          +S N+      T  KD     +  + 
Sbjct: 228 SI---YGQEYTGTTYKLAKMNLAIC--------GISANLGDVPADTFFKDQHPDLKADFI 276

Query: 296 LSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF +K W    + ++           G  +P  S+ +  +++++ +KL    +  G
Sbjct: 277 MANPPFNQKDWRGVNELLDDPR------WAGYDVPPKSNANYGWILNIVSKL----SQNG 326

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
            A  +L++  L     G  E +IR+ L+ENDL+EAI+ LP ++F+ TNI+  +WIL +N+
Sbjct: 327 VAGFILANGAL---SGGGEEYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWILNANK 383

Query: 414 KTEERRGKVQLINATD-----LWTSIRNEGK--KRRIINDDQR--RQILDIYVSRENGKF 464
           K  E     +  N  D     L+  +R +G   +++ I  D++  ++I + Y + ++   
Sbjct: 384 KQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEKKFIQFDEKNIQEISNTYHTWQSIGG 443

Query: 465 SRMLDYRTFGYRRI 478
              +D  + GY+ I
Sbjct: 444 HSKIDSESQGYKDI 457


>gi|183981973|ref|YP_001850264.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium marinum M]
 gi|183175299|gb|ACC40409.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium marinum M]
          Length = 484

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 182/452 (40%), Gaps = 73/452 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REKYLAFGGS 65
           L + +WK AE L G    + +  VIL    L+ +  A +  +  V     R + LA    
Sbjct: 9   LKDTLWKGAEKLRGSIPASQYKDVILGLVFLKFVSDARDGRKPFVVPPEARWEALAGNAK 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D+   +  A  S    +    +TL                      ++   D      
Sbjct: 69  SPDIGQLIDTAMLSVMTANPSLAATL--------------------PQLYHKVDQRRLGE 108

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +E  G        FSG    P      +M  +YE+ +  F         +F TP  VV 
Sbjct: 109 LVEVLG-----AARFSG---RPSHRARDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVR 160

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   +L        + S G I   YDP CG+GG        +    +H   P  +  +GQ
Sbjct: 161 VIVEIL--------EPSSGRI---YDPCCGSGGMFVQTERFIC---AHDGDPAQISIYGQ 206

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KK 304
           E   +T  +    + +  ++     D     + G T + D   G    Y ++NPPF  K 
Sbjct: 207 ESVEQTWRMAKMNLAVHGID-----DAGLGARWGDTFATDQHDGVPMDYVMANPPFNIKD 261

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W +D    E++ +     RFG   P  ++ +  ++ H+ +KL   P G  +A +V+++  
Sbjct: 262 WARD----EQDPR----WRFG--TPPAANANFAWIQHILSKLA--PTG--QAGVVMANGS 307

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           + +    +GE  IR  +++ DL+  +VALPT LF  T I   LW  +  K + R G+V  
Sbjct: 308 MSS--KTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIPVCLWFFAKDK-KARSGQVLF 364

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           I+A  L + +    +  R + DD   +I D Y
Sbjct: 365 IDARGLGSMVD---RCERTLTDDDVARIGDTY 393


>gi|315586486|gb|ADU40867.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 529

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 201/483 (41%), Gaps = 77/483 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID- 68
           L N IWK A +L G     DF + +L     R + E          RE  L+F  + +  
Sbjct: 19  LHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINRQEREHDLSFDYALLSD 78

Query: 69  ------LESFVKVAGYSFYNTSEYSLSTLGST-----------NTRNNLESYIASFS--D 109
                  E  +   G+ F   S    + L +            N  N +E     F   +
Sbjct: 79  EEAEGAKEGLIVEKGF-FIPPSALFCNVLKNAPNNGDLNVTLQNIFNEIEKSSLGFKSEE 137

Query: 110 NAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           N K +F D D       SS   R+EK   L KI +    ++L  +  +  D V  + YE+
Sbjct: 138 NVKGLFADLDVNSNKLGSSHKNRVEK---LNKIIQAIGDMQLGDYQKSGID-VFGDAYEY 193

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L 
Sbjct: 194 LMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLL 245

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
                + D              GQE+   T+ +C   M +  +      + SK +I  G 
Sbjct: 246 QFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGD 293

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL          F   +SNPP+  +W  DK+ +    +     RF P   L       + 
Sbjct: 294 TLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPILINDE-----RFSPAGVLAPKKTADLA 348

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +L
Sbjct: 349 FTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPDNL 401

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y 
Sbjct: 402 FFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILKTYT 454

Query: 458 SRE 460
            R+
Sbjct: 455 ERK 457


>gi|219669968|ref|YP_002460403.1| type I restriction-modification system, M subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|219540228|gb|ACL21967.1| type I restriction-modification system, M subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 525

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 165/364 (45%), Gaps = 45/364 (12%)

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +F+D D +ST       ++   + ++ K    I+L        V+ + YE+LI +F + 
Sbjct: 128 GLFDDVDLASTKLGANAQQRNVTITEVIKALDEIDLFGHD--GDVIGDAYEYLIGQFAAG 185

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  + + ++     A+ +E       +YDPT G+G  + +    V +
Sbjct: 186 AGKKAGEFYTPQAVSKIISEIV-----AIGQEETAPFH-IYDPTMGSGSLMLNIRRFVKN 239

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G  H        HGQEL   T+ +    +++  +E    R     ++ G TL +D  T 
Sbjct: 240 PGQVHY-------HGQELNTTTYNLARMNLILHNVEQSQMR-----LRNGDTLDEDWPTD 287

Query: 290 K--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F+  + NPP+   W  D     K   +    ++G   PK S     FL+H    L 
Sbjct: 288 EPYLFNAVVMNPPYSANWSADG----KFLSDPRFEQYGKLAPK-SKADFSFLLHGFYHL- 341

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   IVL    LF G   + E  IR+ LL+   IEA++ LP ++F+ T+I T +
Sbjct: 342 ---NEKGTMGIVLPHGVLFRG---ASEGVIRKTLLDMGAIEAVIGLPANIFYGTSIPTVV 395

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSR 466
            IL  +K   +R  V  I+A+  +   +N+      I     R+I+D Y  R +  +++ 
Sbjct: 396 LIL--KKNRAKR-DVLFIDASKAFEKQKNQ----NCIRSQDIRKIVDTYKKRSSSPQYAH 448

Query: 467 MLDY 470
           + DY
Sbjct: 449 LADY 452


>gi|296110699|ref|YP_003621080.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154]
 gi|295832230|gb|ADG40111.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154]
          Length = 514

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 42/367 (11%)

Query: 99  NLESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           NLE  +      D+ + +F D D  S       + ++         I+   D     V+ 
Sbjct: 116 NLEQSVKGHKSEDDFEGLFSDIDLDSNRLGKNPSQVMNDTITALKDIDFDSDR---DVLG 172

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F     + A +F TPR V  +   ++        ++    IR++YDP  G+
Sbjct: 173 DAYEYLISEFAMSAGKKAGEFYTPRTVSEIIARIVAKG----HEDGDNQIRSVYDPAMGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      V    +       +  HGQEL   T  +    +++  +  +       ++
Sbjct: 229 GSLLLTVAGQVTGNKT-------IAYHGQELNTTTFNLARMNLMLHGVSFE-----DIHV 276

Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D    +  +F   + NPP+   W  D+  +  E +  + G+  P     S  
Sbjct: 277 RNGDTLDNDWPAQEPYQFDAVVMNPPYSAHWNNDESRL-SEPRFRDYGKLAPK----SKA 331

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H      L P+G     IVL    LF G A   E +IR+ L+++++I+A++ LP
Sbjct: 332 DYAFLLH--GLYHLKPSG--TMGIVLPHGVLFRGAA---EGKIRQQLIDSNMIDAVIGLP 384

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + IL   K  +    V  I+A + +T    +GK + +++++   +I+ 
Sbjct: 385 ANIFYSTSIPTVILILKKNKATK---DVLFIDAINQFT----KGKNQNVLSEENIDKIVS 437

Query: 455 IYVSREN 461
            Y  R++
Sbjct: 438 TYDKRQD 444


>gi|326569343|gb|EGE19403.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis BC8]
          Length = 545

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 198 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSGR-VYDPA 246

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  + V  M IR +  D      
Sbjct: 247 MGSGGFFVQTDRFIQ---AHQGNRNAISVYGQESNPTTRKLAVMNMAIRGIPFD------ 297

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   TL   L   K+  + ++NPPF  K+W  +  A +         R+  G P   
Sbjct: 298 FGDKPEDTLLNPLHIDKKMDFVMANPPFNMKEWWSESLAGDP--------RWAYGTPPQG 349

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + ++ +L H+     L P G  + A++L++  +      SGE EIR+ ++  DL+EA++A
Sbjct: 350 NANLAWLQHMI--YHLSPKG--KMALLLANGSM--SSQTSGEGEIRKNIITADLVEAMIA 403

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +WI++  K + R+G+V  INAT +
Sbjct: 404 LPNQLFTNTQIPACIWIIN--KAKARKGEVLFINATQI 439


>gi|325578338|ref|ZP_08148473.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160074|gb|EGC72203.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 514

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 197/496 (39%), Gaps = 100/496 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW+ A D+ G     DF + +L  TL  R         S     Y+  G  ++D
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLG-TLFYRF-------ISENFANYIEGGDDSVD 60

Query: 69  LESF--------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             +F              +K  GY  Y  S+   + + + NT  NL + + +        
Sbjct: 61  YSTFNDDDPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKNIFTAIENS 119

Query: 108 ------SDNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL------HPDTV 150
                   + K +F DFD +S     T+A  +K   L  + K  + ++       H D  
Sbjct: 120 ATGYPSEQDIKGLFADFDTTSSRLGNTVA--DKNSRLADVLKGVAELDFGDFEDNHIDLF 177

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D      YE LI  + +   +   +F TP+ V  L   L L   D + K        +Y
Sbjct: 178 GDA-----YEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IY 224

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L  A          H I       GQE+   T+ +    M +  +  D   
Sbjct: 225 DPAAGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF- 277

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG 327
               +I  G+TL    F   K F   +SNPP+  KW    D   +  E       RF P 
Sbjct: 278 ----DIALGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPA 326

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+
Sbjct: 327 GVLAPKSKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNN 379

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            +E ++AL  +LFF T+IA  + +LS  K   +    Q I+A+ L+    N   +   I 
Sbjct: 380 YVETVIALAPNLFFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKPDTNNSLEPEHI- 435

Query: 446 DDQRRQILDIYVSREN 461
                QIL ++  +E+
Sbjct: 436 ----EQILKLFADKED 447


>gi|237742577|ref|ZP_04573058.1| type I restriction-modification system [Fusobacterium sp. 4_1_13]
 gi|229430225|gb|EEO40437.1| type I restriction-modification system [Fusobacterium sp. 4_1_13]
          Length = 520

 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T + L             +  +YDP CG+G 
Sbjct: 185 YEYLMGMYASNAGKSGGEYYTPQEVSELLTKITL--------VGKTEVNKVYDPACGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 237 LLLKFAKILGKNNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 285

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 286 GDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L       G AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 341 LAFIMHSLSWLA----SNGTAAIVCFPEVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPD 393

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K      DD    I++ 
Sbjct: 394 NLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNKMTEKHIDD----IVEK 446

Query: 456 YVSRENGKF-SRMLDYR 471
           +  REN ++ S +++Y 
Sbjct: 447 FTKRENIEYISNLIEYE 463


>gi|51598167|ref|YP_072358.1| type I site-specific deoxyribonuclease LldI chain hs... [Yersinia
           pseudotuberculosis IP 32953]
 gi|186897391|ref|YP_001874503.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51591449|emb|CAH23120.1| putative type I site-specific deoxyribonuclease LldI chain hs
           [Yersinia pseudotuberculosis IP 32953]
 gi|186700417|gb|ACC91046.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 507

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 41/347 (11%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRV---- 154
           E+      D +K++F++  F++     EK    +L ++ ++F+  EL+    P RV    
Sbjct: 107 EANGTKLKDGSKSVFQEISFNTNKLGDEKQKNLILKQLLEDFTHPELN--LKPSRVGGLD 164

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + N YE+LI +F +   + A ++ TP +V  L  ALL DP        PG   ++ DPT
Sbjct: 165 VIGNAYEYLIGKFAANSGQKAGEYYTPPEVSDLLAALL-DP-------QPG--ESICDPT 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+   L      VA+   H K   +   +GQE    T ++    M +   E + + +  
Sbjct: 215 CGSASLLMKCGKWVAE-KYHSKNYEL---YGQEAIGSTWSLAKMNMFLHG-EDNHKIEWG 269

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+    L K+      F    +NPPF  +KW  D      +  + +  RF  GLP  +
Sbjct: 270 DTIRNPKLLDKNA-NLMLFDVVTANPPFSLEKWGID------DVSDDQFSRFRRGLPPKT 322

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G   F++H+   +E      GR  +V+    LF G   S E +IR+ L++ +L++A++ 
Sbjct: 323 KGDYAFILHM---IETMKPKTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIG 376

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LP  LFF T I   + I    K ++    V  I+A+  + S +N+ +
Sbjct: 377 LPEKLFFGTGIPAAILIFKKSKVDDN---VLFIDASREFNSGKNQNQ 420


>gi|45656820|ref|YP_000906.1| type I restriction enzyme [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600056|gb|AAS69543.1| type I restriction enzyme [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 513

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 201/479 (41%), Gaps = 70/479 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A+L   IW+ A D+ G     DF + +L     R         +E   S+++  Y     
Sbjct: 8   AALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ--YSKLND 65

Query: 65  SNIDLE---SFVKVAGYSFYNTSEYS-LSTLGSTNTRNN---------LESYIASF--SD 109
             I  E     +K  GY  Y +  ++ + T    N R N         +ES    F    
Sbjct: 66  KKITKEIKDDAIKTRGYFIYPSQLFANIVTKADKNERLNTDLAGIFKDIESSANGFPSEH 125

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLI 163
           + K +F DFD +S   RL     +K   L  + K  + ++    D+    +  + YE LI
Sbjct: 126 DIKGLFADFDTTSN--RLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAYEFLI 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   L      A+ K++   I  +YDP CG+G  L  A
Sbjct: 184 SNYAANAGKSGGEFFTPQHVSKLIARL------AIHKQT--RINKIYDPACGSGSLLLQA 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL 
Sbjct: 236 KKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIELGNTLI 284

Query: 284 KDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                 ++ F   +SNPP+   W+   D      +     RF P   L   S     F++
Sbjct: 285 DPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +  GRAAIV      +  R+G+ E +IR++L+ N+ +E +++L  +LFF 
Sbjct: 340 HALSYL----SSKGRAAIVCFPGIFY--RSGA-EQKIRQYLVGNNFVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T IA  + +LS  KT+      Q I+A+ L+    N      I+ +D   +I+  + S+
Sbjct: 393 TTIAVNILVLSKHKTDTN---TQFIDASGLFKKETN----NNILTEDHIERIMQTFDSK 444


>gi|149196779|ref|ZP_01873832.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Lentisphaera araneosa
           HTCC2155]
 gi|149139889|gb|EDM28289.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Lentisphaera araneosa
           HTCC2155]
          Length = 862

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 158/329 (48%), Gaps = 51/329 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI +F +   + A +F TP +V     +LL+    A   +    I  +YDPT
Sbjct: 164 VLGFIYEYLIEKFAANAGKKAGEFYTPHEV-----SLLMSEITAHHLKGNETIE-IYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +    VA    + +    +  + QEL+  T+ +    +++R +       L 
Sbjct: 218 SGSGSLLINIGTSVA---KYIENKDSIKYYAQELKGNTYNLTRMNLIMRGI-------LP 267

Query: 274 KNIQ--QGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            NI+   G TL +D            +   R    +SNPP+ +KW    D+V KE  +  
Sbjct: 268 NNIEVRNGDTLEEDWPYFDDNDPHGSYRHLRVDAVVSNPPYSQKW----DSVNKE-TDPR 322

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             RFG   PK +     FL+H  +   + P+G    +IVL    LF  R G  E EIR+ 
Sbjct: 323 YARFGLA-PK-TKADFAFLLH--DLYHVKPDG--IMSIVLPHGVLF--RVGE-EGEIRKQ 373

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+EN+ IE I+ LP ++FF T I T + +L  +    R+G   LI   D       EGK 
Sbjct: 374 LIENNHIETIIGLPANIFFGTGIPTIILVLRQK----RQGDDVLI--VDASKHFIKEGKS 427

Query: 441 RRIINDDQRRQILDIYVSREN-GKFSRML 468
            ++   D +R ++D  ++R++  KFSR++
Sbjct: 428 NKLQASDIKR-VVDTVINRDDRDKFSRLV 455


>gi|322411067|gb|EFY01975.1| type I restriction-modification system M protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 531

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 40/321 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F S+  + A +F TP+ V HL T ++        ++  GM  TLYDPT
Sbjct: 175 ILGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVF----VGREDKKGM--TLYDPT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +     +       +   GQE+   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKRYSNQAST-------VSYFGQEVITSTYNLARMNMMLHGVPIE-----N 276

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++++ G TL  D  T +   F   L NPP+  KW      ++    +     FG   PK 
Sbjct: 277 QHLRNGDTLDADWPTTEPTDFDGVLMNPPYSMKWSGAAGFLQ----DPRFSAFGVLAPK- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ ++
Sbjct: 332 SKADFAFLLHGYYHLK----HSGVMAIVLPHGVLFRGAA---EKKIRQHLLEEGAIDTVI 384

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++F+ T+I T + IL   +T +    V  I+A+  +   +N+      + D    +
Sbjct: 385 GLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFIKNKNQNN----MTDAHIEK 437

Query: 452 ILDIYVSREN-GKFSRMLDYR 471
           IL  Y +RE+  KF+ +  + 
Sbjct: 438 ILKTYEAREDVDKFAHLASFE 458


>gi|89898854|ref|YP_521325.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89343591|gb|ABD67794.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 544

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 133/283 (46%), Gaps = 40/283 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +IYE+ +  F     +   +F TP+ +V +   +L +P +            +YDP 
Sbjct: 188 ILGHIYEYFLGEFSIAAGKRGGEFYTPKSIVSVIVEML-EPFEG----------RVYDPC 236

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GGF   +   V + G   KI  + + +GQE  P T  +    M IR L+ D  +   
Sbjct: 237 CGSGGFFVQSERFVLEHGG--KIGQLSI-YGQEFNPTTWRLASMNMAIRGLDFDFGK--- 290

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +  ST ++      R  + ++NPPF  K W        KE    +  R+  G+P   
Sbjct: 291 ---EPASTYTRPQHPDLRADFIMANPPFNMKAW--------KEGVKDDDPRWKYGVPPDG 339

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +   L P+G    A++L++  + +    + E EIR+ L+E DL+E +VA
Sbjct: 340 NANFAWMQHMIH--HLAPHGS--MALLLANGSMSSNT--NNEGEIRKALIEADLVECMVA 393

Query: 393 LPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQLINATDL 430
           LP  LF  T I   +W L+  K E      R G+V  I+A  L
Sbjct: 394 LPGQLFTNTQIPACIWFLTRSKAERKAKRSRHGEVLFIDARQL 436


>gi|111224380|ref|YP_715174.1| restriction enzyme subunit M (methylation) [Frankia alni ACN14a]
 gi|111151912|emb|CAJ63633.1| Restriction enzyme subunit M (methylation) [Frankia alni ACN14a]
          Length = 806

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 181/439 (41%), Gaps = 57/439 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++  A+ L G    ++F + I     L+R     E     V  + +A G S  D 
Sbjct: 10  QLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEERVIAQLIAEGRSRADA 69

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA------------KAIFED 117
           E   +    + Y  + Y          R+ +   +    + A            + + + 
Sbjct: 70  EQ--RATARARYRDTLYVPEEARWARLRDQVHHNVGDELNKALLALEECNNTALEGVVQH 127

Query: 118 FDFSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGA 174
            DF+ T+ +       L  +  +F+ + L  +    PD ++   YE+LI  F     +  
Sbjct: 128 IDFTRTVGQSRIPDRKLRDLIAHFNTVRLRNEDFEFPD-LLGAAYEYLIGEFADSAGKKG 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV +  AL+ DP        P M   +YDP  G+ G L  A + VA+ G   
Sbjct: 187 GEFYTPRAVVRMMVALV-DP-------KPKM--EIYDPCSGSAGMLILARDWVAEHGGD- 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
             P  L   GQE      ++    +L+  +          +I+ G TL++ +       +
Sbjct: 236 --PRDLRLAGQEYNGGVWSISKMNLLLHGIPD-------ADIRNGDTLAEPMHVSGGELE 286

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   LSNPPF   +   ++ +E+E++     R+G          ++F+ H+   L    
Sbjct: 287 RFDRVLSNPPFSLNY--SREGMERENRF----RWGWAPEGGKKADLMFVQHMVAVL---- 336

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA V+    LF G     E +IR  LL +D+IEA++ L  +LF+ T I   + +L
Sbjct: 337 RANGVAATVMPHGVLFRG---GTERDIRTALLNDDVIEAVIGLAPNLFYGTGIPACVLVL 393

Query: 411 S--NRKTEERRGKVQLINA 427
                K  ER GKV  INA
Sbjct: 394 RAPGAKPAERAGKVLFINA 412


>gi|317131471|ref|YP_004090785.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
 gi|315469450|gb|ADU26054.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
          Length = 501

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 40/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   YE+ + RF  +  + A +F TP  VV    A++  P D            +YDP 
Sbjct: 152 MLGRTYEYCLGRFAEQEGKLAGEFYTPASVVRTLVAVI-KPFDG----------RVYDPC 200

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    +H      L  +GQ+  P T  +C   + I  +++D      
Sbjct: 201 CGSGGMFVQSAEFVK---AHAGNIRNLSVYGQDSNPTTWKLCRMNLAIHGIDADLGE--- 254

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T   D     +  Y L+NPPF    W  DK A ++  K G+        P   
Sbjct: 255 ---AAADTFFNDRHPTMKADYILANPPFNLSGWGADKLADDQRWKYGQ--------PPAG 303

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+        +  GR  +VL++  L       GE  IR+ ++E+DL+E I+A
Sbjct: 304 NANFAWMQHMI----FHTSAKGRIGMVLANGSL--ASQNGGEGAIRKAIVEDDLVEGIIA 357

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P  LF+ T I   LW L   K +   GK+  I+A  + T +    ++ R +  +   +I
Sbjct: 358 MPPQLFYTTQIPVSLWFLDRAKKQP--GKMLFIDARHMGTMV---SRRLREMTKEDISKI 412

Query: 453 LDIYVSRENG 462
            D + + ENG
Sbjct: 413 SDTFEAFENG 422


>gi|121583502|ref|YP_973928.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596752|gb|ABM40186.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 517

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 43/293 (14%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +P T  D V+  +YE+ +  F S   +    F TP  +V    A+L  P           
Sbjct: 157 NPSTARD-VLGQVYEYFLGMFASAEGKRGGQFYTPASIVKTLVAIL-GPHSG-------- 206

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR + 
Sbjct: 207 --KVYDPCCGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQEANPTTWRLAAMNLAIRGI- 260

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL--- 321
                D +   + G T +++     R  + L+NPPF    W            +G L   
Sbjct: 261 -----DFNLGKEPGDTFTRNQHPDLRADFILANPPFNISDW-----------WHGSLMGD 304

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P   + +  +L H+ + L+  P G  RA IVL++  + + +  + E +IR  +
Sbjct: 305 ARWVHGDPPPGNANYAWLQHMLHHLK--PTG--RAGIVLANGSMSSSQ--NSEGQIRAAM 358

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           +E D++E +VALP  LFF T I   LW L  +KT  R+G+V  I+A  L T I
Sbjct: 359 VEADVVEVMVALPGQLFFNTQIPACLWFLVKQKT-HRKGEVLFIDARKLATMI 410


>gi|153829663|ref|ZP_01982330.1| type I restriction-modification system, M subunit [Vibrio cholerae
           623-39]
 gi|148874839|gb|EDL72974.1| type I restriction-modification system, M subunit [Vibrio cholerae
           623-39]
          Length = 510

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 168/365 (46%), Gaps = 53/365 (14%)

Query: 109 DNAKAIFEDFDFSSTIARL----EKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEH 161
           D+ K++F+D  F++   RL    +K  +L  + + F+  EL+  P  V    V+ N YE+
Sbjct: 115 DSGKSVFQDISFNTD--RLGEDKQKNNILRYLLEVFAKPELNLKPSRVSTLDVIGNAYEY 172

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI+ F     + + +F TP +V  L T LL        +  PG   ++ DPTCG+G  L 
Sbjct: 173 LIKNFAVSSGKKSGEFYTPPEVSDLITELL--------EPQPG--DSICDPTCGSGSLLI 222

Query: 222 DAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
              N V    D  ++         +GQE+   T +     M +   E + + +    I+ 
Sbjct: 223 KCGNKVRTKFDSKNY-------ALYGQEMNGSTWSRAKMNMFLHG-EDNHKIEWGDTIRN 274

Query: 279 GSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              L K  DL     F    +NPPF       +DA     +N +  RF  G+P  + G  
Sbjct: 275 PKLLDKNGDLML---FDIVAANPPFSVDQWGHEDA-----ENDKFNRFRRGIPPKTKGDY 326

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H+   L+ P  G  R  +++    LF G   S ES+IR+ L++ +L++A++ LP  
Sbjct: 327 AFILHMIETLK-PKTG--RMGVIVPHGVLFRG---STESKIRQQLIDENLLDAVIGLPDK 380

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I   + I    K ++    V  I+A+  +      GK +  ++ D   +I+  Y
Sbjct: 381 LFYGTGIPAVILIFKKEKVDDN---VLFIDASHEFKP----GKNQNQLSADNIAKIVATY 433

Query: 457 VSREN 461
            + EN
Sbjct: 434 KANEN 438


>gi|332308206|ref|YP_004436057.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175535|gb|AEE24789.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 535

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 137/295 (46%), Gaps = 48/295 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F +   +G  +F TP+ +V L  A +++P              +YDP 
Sbjct: 168 LVGRVYEYFLGKFAASEGKGGGEFYTPKSIVSL-IAEMIEPYKG----------KIYDPC 216

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    ++  +    SH      +  +GQE    T+ +    + +R         +S
Sbjct: 217 CGSGGMFVQSLKFI---DSHKGNKKDISIYGQEYTNTTYKLAKMNLAVR--------GIS 265

Query: 274 KNIQQ--GSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPK 330
            N+ +  G T  KD     +  + ++NPPF +K W  + + V+    +G        +P 
Sbjct: 266 ANLGEVAGDTFFKDQHPDLKADFIMANPPFNQKQWRGENELVDDPRWSG------FDVPP 319

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  ++MH+ +KL    +  G A  VL++  + +    SGE EIR+ ++E DL++ +
Sbjct: 320 TGNANYAWIMHMISKL----SEHGTAGFVLANGSMSSNT--SGEGEIRKKIIEKDLVDCM 373

Query: 391 VALPTDLFFRTNIATYLWILSNRKT-----------EERRGKVQLINATDLWTSI 434
           +ALP  LF+ T I   LW +S  K              R+G+   I+A ++ + +
Sbjct: 374 IALPGQLFYTTQIPVCLWFISKNKKAVDASEDFAKRRNRQGETLFIDAREMGSMV 428


>gi|325202378|gb|ADY97832.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240149]
          Length = 513

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 189/467 (40%), Gaps = 83/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y +  + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 KF-----HIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +
Sbjct: 377 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFF 420


>gi|229165871|ref|ZP_04293637.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH621]
 gi|228617576|gb|EEK74635.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH621]
          Length = 538

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 213/497 (42%), Gaps = 88/497 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR-------------RLECALEPTRS 53
           +A  + + +W+ A  L G    +++   ILPF   R              LE   E T  
Sbjct: 3   NATDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNDLEEFYEVTDD 62

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTR-NNLESYIASFSDN 110
             +E YL         E   K  GY+     T +  +S + +   + ++ +    SF+ N
Sbjct: 63  TEKEDYL---------EEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTN 113

Query: 111 AK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155
           AK           +F D +   T  RL     E+A  L  I    +      D+  D ++
Sbjct: 114 AKRNAIAEADFANVFSDVNLGDT--RLGSSTNERAKALNDIVLMINEFTFKDDSGHD-IL 170

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTC 214
            ++YE+LI +F +   +   +F TP +V   LA  + +D          G    +YDPT 
Sbjct: 171 GDVYEYLIGQFAANAGKKGGEFYTPHEVSQVLAKIVTIDA------AGTGDQFRVYDPTM 224

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L    N + +      +      +GQEL   T+ +    +++  +     R++  
Sbjct: 225 GSGSLLLTVQNELPNGDEEGSVEF----YGQELNTTTYNLARMNLMMHGVN---YRNME- 276

Query: 275 NIQQGSTLSKDL-FTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-G 325
            +++  TL  D  F  K       +F   ++NPP+ +KW  D   V++E       RF G
Sbjct: 277 -LKRADTLDADWPFAEKDGTQIPLKFDAVVANPPYSQKW--DTKDVDREKDT----RFKG 329

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+   S     F++H    L+      G  AIVL    LF G   + E  IR+ +++N+
Sbjct: 330 YGVAPASKADYAFILHGLYHLD----KAGTMAIVLPHGVLFRG---ASEGRIRKNIIDNN 382

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRII 444
           L++ ++ LP +LF+ T I T + +   R  E R+ K +  I+A++ +   +N+ K    +
Sbjct: 383 LLDTVIGLPANLFYGTGIPTCVLVFKGR--EARKNKDILFIDASNEFEKGKNQNK----L 436

Query: 445 NDDQRRQILDIYVSREN 461
           + +   +I++ Y  RE+
Sbjct: 437 SAENINKIIETYSIRED 453


>gi|315641380|ref|ZP_07896455.1| type I restriction-modification system DNA-methyltransferase
           [Enterococcus italicus DSM 15952]
 gi|315482873|gb|EFU73394.1| type I restriction-modification system DNA-methyltransferase
           [Enterococcus italicus DSM 15952]
          Length = 535

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 41/309 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F SE  + A +F TP+ +  L T + +D  +    +  G   ++YDPT
Sbjct: 174 ILGDAYEYLISQFASESGKKAGEFYTPQPISELMTRIAIDGKE----DQKGF--SVYDPT 227

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +      + G        +   GQEL   T  +    M++  ++S      +
Sbjct: 228 MGSGSLLLNVRRFSNEKG-------FINYFGQELNTSTFNLARMNMILHGVDS-----AN 275

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++++ G TL  D  T +   F   L NPP+  KW  +K  ++    +     +G   PK 
Sbjct: 276 QHLRNGDTLDGDWPTEEPTNFDAVLMNPPYSAKWSGEKGFLD----DPRFSMYGVLAPK- 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AI+L    LF G +   E +IR  LL N  I+ ++
Sbjct: 331 SKADFAFLLHGYYHLK----ESGVMAIILPHGVLFRGNS---EGKIREILLRNGAIDTVI 383

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP ++FF T+I T + IL  NR  ++    V  I+A++ +T    +GK + ++  +   
Sbjct: 384 GLPANIFFSTSIPTTVIILKKNRPNQD----VLFIDASNGFT----KGKNQNVLEPNHIE 435

Query: 451 QILDIYVSR 459
            I+D Y  R
Sbjct: 436 AIIDTYQKR 444


>gi|167756438|ref|ZP_02428565.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402]
 gi|167703846|gb|EDS18425.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402]
          Length = 516

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 200/490 (40%), Gaps = 86/490 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L + IWK A ++ G     DF + +L  TL  R         S     Y+  G  +I+
Sbjct: 8   AELQSQIWKIANEVRGSVDGWDFKQYVLG-TLFYRF-------ISENFSNYIEGGDDSIN 59

Query: 69  L-------------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FS------ 108
                         E  +K  GY  Y  S+   +   + NT ++L + +A  FS      
Sbjct: 60  YAELDDSIITKEIKEDAIKTKGYFIY-PSQLFCNIAKNANTNDSLNTDLAKIFSAIESSA 118

Query: 109 ------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156
                  + K +F DFD +S   RL     +K   L  + K   G+     +     +  
Sbjct: 119 SGYPSESDIKGLFADFDTTSN--RLGNTVKDKNSRLAAVIKGVEGLSFGKFEENQIDLFG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L +             I  +YDP  G+
Sbjct: 177 DAYEFLISNYAANAGKSGGEFFTPQSVSKLIAKLAM--------HGQSTINKIYDPAAGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A          H I       GQE+   T+ +    M +  +  D       NI
Sbjct: 229 GSLLLQAKKQF----DEHIIEDGFF--GQEINHTTYNLARMNMFLHNVNYDKF-----NI 277

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G+TL    F  ++ F   +SNPP+   W  + D            RF P   L   S 
Sbjct: 278 ALGNTLLNPQFGDEKPFDAIVSNPPYSIPWIGNSDPTLINDV-----RFAPAGVLAPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +EA+++L
Sbjct: 333 ADFAFVLHALSYL----SSRGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVEAVISL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQ 451
             +LFF T+IA  + +LS  KTE    K Q I+A+  D +    N      I+ ++    
Sbjct: 386 APNLFFGTSIAVNILVLSKHKTET---KTQFIDASGEDYFKKETN----NNILTEEHINA 438

Query: 452 ILDIYVSREN 461
           IL+++ ++++
Sbjct: 439 ILELFANKKD 448


>gi|15611853|ref|NP_223504.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4155366|gb|AAD06378.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 528

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 208/485 (42%), Gaps = 81/485 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPT---RSAVR 56
           L N IWK A +L G     DF + +L     R +           E  ++P     S   
Sbjct: 22  LHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKIDPNFDYASLSD 81

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------DN 110
           E+      S I+ + F       F N  + + +      T  N+ + I   S      +N
Sbjct: 82  EEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFNEIEKSSLGTPSEEN 141

Query: 111 AKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
            K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE+L
Sbjct: 142 VKGLFADLDVNSNKLGSSHQNRVEK---LTKILQAIGGMQLGDYQQSGID-VFGDAYEYL 197

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   ++ TP++V  L   + L   +         I  +YDP CG+G  L  
Sbjct: 198 MAMYASNAGKSGGEYFTPQEVSELLAKITLHNQEN--------INKVYDPCCGSGSLLLQ 249

Query: 223 AMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
               + D         +L  + GQE+   T+ +C   M +  +      + SK +I  G 
Sbjct: 250 FSKVLGD-------KNVLKGYFGQEINLTTYNLCRINMFLHDI------NYSKFHIALGD 296

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAV----EKEHKNGELGRFGPGLPKISDGS 335
           TL          F   +SNPP+  KW  D + +    E+ +K G L       PK +   
Sbjct: 297 TLLDPKHEDDEPFDAIVSNPPYSTKWIGDNNPLLMNDERFNKAGALA------PK-NAAD 349

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F MH+ + L    +  G AAIV     L+  R+G+ E +IR +L++ + I+ ++ALP 
Sbjct: 350 LAFTMHMLSYL----SNQGAAAIVEFPGVLY--RSGA-EKKIREYLVKENFIDCVIALPE 402

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF TNIAT + +L   K ++       I+A+  +     EGKK + +    R +IL  
Sbjct: 403 NLFFGTNIATCILVLKKNKKDDT---TLFIDASKEFLK---EGKKNK-LKAHNREKILQT 455

Query: 456 YVSRE 460
           Y+ R+
Sbjct: 456 YIERK 460


>gi|227529075|ref|ZP_03959124.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351087|gb|EEJ41378.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
          Length = 550

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 118/499 (23%), Positives = 212/499 (42%), Gaps = 87/499 (17%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPTRSAVR 56
           A  + N IW+ A  L G+   +++   IL F   R L           E        +V 
Sbjct: 4   AQKITNKIWEMANRLRGNMDASEYRDYILGFMFYRYLSEHQEKYLVKNEVVFPEEGQSVN 63

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTL---------GSTNTRNNLESYIAS 106
           + YL         ++   +AG   Y  + +Y+ +T+          +++ ++  +S+  +
Sbjct: 64  DAYLTQVPEEDLNDALADIAGSLGYAIAPQYTWATIVDKVHDNKIAASDYQDMFDSFNHN 123

Query: 107 FSDNAKA------IFEDFDFSS------TIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            + NA +      +F+D + ++      T AR   A  L  I      IE   +   D +
Sbjct: 124 LNLNANSKMDFTGVFDDMNLNNSRLGNNTAAR---AKALTNIIDLVDEIEYRDENGKD-I 179

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IY +LI  F S   + A +F TP  V  +   L+ +  D           ++YD  C
Sbjct: 180 LGDIYTYLIAEFASNSGKKAGEFFTPHQVSEVLAKLVTENLDKNITRP-----SVYDFAC 234

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDL 272
           G+G  L              ++P  +V H  GQEL   T+ +    +++  +     R  
Sbjct: 235 GSGSLL---------LTVSEQLPSNMVVHYHGQELNTSTYNLARMNLMMHDV-----RYE 280

Query: 273 SKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           + +++   TL  D   G         + F   ++NPP+  +W+ + + +    K+     
Sbjct: 281 NMDLRNADTLEMDWPDGVDEHGVDHPRSFDMVVANPPYSARWDNNDNKL----KDPRFKE 336

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +G   PK +     FL+H    L+      G  AIVL    LF G   + E++IR+ LLE
Sbjct: 337 YGALAPK-TKADYAFLLHGLYHLK----QDGTMAIVLPHGVLFRG---AKEAKIRQALLE 388

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-- 441
            + I+AI+ LP +LF+ T I T + +L  +K +E +  V  I+A+  +   +N+   R  
Sbjct: 389 KNQIDAIIGLPANLFYSTGIPTVVLVL--KKNKENKD-VLFIDASKDFEKGKNQNTLRKE 445

Query: 442 ---RIINDDQRRQILDIYV 457
              +IIN  + R+ +D Y 
Sbjct: 446 DIDKIINTYKERKDVDKYA 464


>gi|295091335|emb|CBK77442.1| type I restriction system adenine methylase (hsdM) [Clostridium cf.
           saccharolyticum K10]
          Length = 520

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 188/477 (39%), Gaps = 72/477 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL----- 69
           IW  A++L G     DF   +L     R +    E   + +     A G S+ D      
Sbjct: 17  IWAIADELRGAVDGWDFKNYVLGTMFYRYIS---ENLCNYINSGEAAAGNSDFDFAKMPD 73

Query: 70  -------ESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKA------ 113
                  +  V+  G+    +  +      + N  N    LE       ++AK       
Sbjct: 74  EDAEEARDGLVEEKGFFILPSELFCNVRANAANDENLNETLERVFRHIEESAKGSEAEND 133

Query: 114 ---IFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRF 166
              +F+D+D +S       A    K+ K  +G+ E+    V D       + YE+L+  +
Sbjct: 134 FAGLFDDYDVNSNKLGSTVAKRNEKLAKLLNGVGEMKLGDVKDHSIDAFGDAYEYLMMMY 193

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   +   +F TP DV  L T L               I  +YDP CG+G  L  A   
Sbjct: 194 ASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGSGSLLLKAEKI 245

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKD 285
           +      +        +GQE+   T+ +C   M +  +  D       NI    TL S  
Sbjct: 246 LGRDAIRNGF------YGQEINITTYNLCRINMFLHDVGFDKF-----NIACEDTLISPQ 294

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLA 343
            +  + F   +SNPP+  KW  D + +          RF P   L   S   M F+MH  
Sbjct: 295 HWDDEPFELIVSNPPYSIKWVGDDNPLLINDP-----RFAPAGVLAPKSKADMAFIMHSL 349

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ LP++LFF T+I
Sbjct: 350 SWLA----SNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCIIQLPSNLFFGTSI 402

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           AT + ++   K +    K   I+AT     + N  K    +  +    I+D +  RE
Sbjct: 403 ATCIMVMKKNKAD---NKTLFIDATRECVKVTNNNK----LTPENIDHIVDAFAKRE 452


>gi|152991448|ref|YP_001357170.1| type I restriction-modification system, M subunit [Nitratiruptor
           sp. SB155-2]
 gi|151423309|dbj|BAF70813.1| type I restriction-modification system, M subunit [Nitratiruptor
           sp. SB155-2]
          Length = 510

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 197/469 (42%), Gaps = 59/469 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  S    +WK A+ L  +    ++  V+L    LR +  A E     ++    
Sbjct: 1   MAKKKQNGDSFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISEAFEDLYEKLKRGEG 60

Query: 61  AFGGSNI-DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            + G++  D++ +   A   F+   E   S L         +  I    DNA  + E  +
Sbjct: 61  EYAGADPEDIDEYR--AENVFFIPPEARWSHLKEKAK----DPEIGKIIDNAMELIEKKN 114

Query: 120 --FSSTIARLEKAGLLYKICKN-----FSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVS 171
                 + ++   G +  I        FS I ++        ++ +++E+ +  F     
Sbjct: 115 PSLKGVLPKVYARGNIDPIALGGLIDLFSNIAINEAKEKTSDILGHVFEYFLGEFALAEG 174

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR VV L   +L           P   R ++DP CG+GG    +   V +  
Sbjct: 175 KKGGQFYTPRSVVELLVEML----------EPYRGR-VFDPCCGSGGMFVQSEKFVQE-- 221

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              KI  I + +GQE    T  +C   + IR ++S   R       +GS L+ D     +
Sbjct: 222 HQGKINDISI-YGQESNQTTWRLCKMNLAIRGIDSSQVR----WNPEGSFLN-DAHKDLK 275

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLPKISDGSMLFLMHLANKLE 347
             + ++NPPF      D D       +GEL     R+  G+P   + +  ++ H      
Sbjct: 276 SDFVIANPPFN-----DSDW------SGELLREDARWKYGVPPAGNANYAWIQHFI--FH 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           L P+G  +A  VL+   L   +    E EIR+ ++E+D+++ IV LP  LF  T I   L
Sbjct: 323 LAPHG--KAGFVLAKGALTTKQ--KDEYEIRKNMIEDDIVDCIVNLPAKLFLNTQIPASL 378

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           W L   KT  R+G++  I+A D+   I    +++RI+  +  ++I D Y
Sbjct: 379 WFLRKNKT-TRKGQILFIDARDMGKLIN---RRQRILTPEDIKKIADTY 423


>gi|300775817|ref|ZP_07085678.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300505844|gb|EFK36981.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 516

 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 178/402 (44%), Gaps = 64/402 (15%)

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           G +N  LE   K+        +   LST+G+ +  +        F D    +F D D +S
Sbjct: 103 GDNNFILEDLQKI-------LTNIQLSTMGTQSEED--------FED----LFSDMDLNS 143

Query: 123 T-IARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             + R   A   L+ K+ K+   I+   +     V+ + YE+LI +F S   + A +F T
Sbjct: 144 NNLGRTADARNTLIVKVLKHLDEIDFKLNDTELDVLGDAYEYLIGQFASGAGKKAGEFYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P++V  +   ++    + L        +++YDPTCG+G  L      V D  +       
Sbjct: 204 PQEVSKILAKIVTTGKNRL--------KSVYDPTCGSGSLLLRVAREVKDVNNF------ 249

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSN 298
              +GQE+   T+ +    M++  +     R    +I+Q  TL          F   ++N
Sbjct: 250 ---YGQEMNRTTYNLARMNMILHGVHY---RQF--DIKQEDTLEHPQHLNDMPFEAIVAN 301

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  KW  +   +  + +  + G+  P     S     F+ H+   L       G  AI
Sbjct: 302 PPFSAKWSANPLFL-NDDRFSQYGKLAPS----SKADFAFVQHMIYHLA----ENGTMAI 352

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           VL    LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I T   IL  +K +E
Sbjct: 353 VLPHGVLFRGAA---ELHIRKYLIEQKNYLDAVIGLPANIFYGTSIPT--CILVFKKCKE 407

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               +  I+A+  +  ++N+     ++ ++   +I++ Y +R
Sbjct: 408 DPDHILFIDASKEFEKVKNQN----MLREEHIDKIVETYRNR 445


>gi|257465468|ref|ZP_05629839.1| type I restriction-modification system, M subunit [Actinobacillus
           minor 202]
 gi|257451128|gb|EEV25171.1| type I restriction-modification system, M subunit [Actinobacillus
           minor 202]
          Length = 503

 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 165/370 (44%), Gaps = 49/370 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRV---- 154
           E+      D  K++F+D  F++     EK    +L ++ ++F+  EL  D  P +V    
Sbjct: 105 EANGTKLKDAGKSVFQDISFNTDKLGEEKQKNTILRELLEDFAKPEL--DLKPSKVGTLD 162

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + N YE+LI+ F +   + A +F TP +V  L   LL           P M  ++ DP 
Sbjct: 163 IIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDLIAELL----------DPQMGDSICDPA 212

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      V    +H      L  +GQE    T ++    M +   E + R +  
Sbjct: 213 CGSGSLLMKCGQKVVK--NHQSKNYAL--YGQEAIGSTWSLAKMNMFLHS-EDNHRIEWG 267

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+    L    +L T   F    +NPPF   KW  D+ + ++        RF  GLP 
Sbjct: 268 DTIRNPKLLDSNGELIT---FDIVTANPPFSLDKWGYDEVSQDR------FQRFEHGLPP 318

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            + G   F+ H+   L+      GR  +V+    LF G A   E +IR+ L++ +L++A+
Sbjct: 319 KTKGDYAFISHMIKTLK---EKTGRMGVVVPHGVLFRGAA---EGKIRQKLIDENLLDAV 372

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LF+ T I   + I    KT++    V  I+A++ +      GK +  +  +   
Sbjct: 373 IGLPEKLFYGTGIPAAILIFRKNKTDD---TVLFIDASNEFKP----GKNQNTLTVENIE 425

Query: 451 QILDIYVSRE 460
           +I+  Y +R+
Sbjct: 426 KIVRTYRTRQ 435


>gi|145631985|ref|ZP_01787737.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982369|gb|EDJ89949.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 338

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 137/310 (44%), Gaps = 49/310 (15%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G 
Sbjct: 4   YEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGS 55

Query: 219 FLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
            L  A      H+ + G            GQE+   T+ +    M +  +  D       
Sbjct: 56  LLLQAKKQFDEHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF----- 100

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G+TL    F   K F   +SNPP+  KW    D      +     RF P   L   
Sbjct: 101 DIALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGVLAPK 155

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ ++A++
Sbjct: 156 SKADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVI 208

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           AL  +LFF T+IA  + +LS  K   +    Q I+A+ L+ S  N      I+ ++   Q
Sbjct: 209 ALAPNLFFGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNILEEEHIEQ 261

Query: 452 ILDIYVSREN 461
           IL ++  +E+
Sbjct: 262 ILKLFADKED 271


>gi|229526954|ref|ZP_04416351.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae 12129(1)]
 gi|229335566|gb|EEO01046.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae 12129(1)]
          Length = 507

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 51/367 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRV---- 154
           E+      D  K++F+D  F++     EK    +L  + ++F+  EL  +  P RV    
Sbjct: 107 EANGTKLKDAGKSVFQDISFNTDKLGEEKQKNTILRHLLEDFAKPEL--NLKPSRVGTLD 164

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + N YE+LI+ F +   + A +F TP +V  L  A LLDP        PG   ++ DP 
Sbjct: 165 VIGNAYEYLIKNFAASGGQKAGEFYTPPEVSDL-IAELLDP-------QPG--DSICDPA 214

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+G  L      V A+ GS          +GQE    T ++    M +   E + + + 
Sbjct: 215 CGSGSLLMKCGRKVVANHGSKQ-----YALYGQEAIGSTWSLAKMNMFLHG-EDNHKIEW 268

Query: 273 SKNIQQGSTLSK--DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLP 329
              I+    L K  DL     F    +NPPF   KW  D    E EH   +  RF  G+P
Sbjct: 269 GDTIRNPKLLDKNGDLML---FDIVTANPPFSLDKWGHD----EAEHD--KFSRFRRGVP 319

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             + G   F++H+   L+ P +G  R  +V+    LF G   S E +IR+ L++ +L++ 
Sbjct: 320 PKTKGDYAFILHMIETLK-PKSG--RMGVVVPHGVLFRG---SSEGKIRQQLIDENLLDT 373

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP  LF+ T I   + +    K+++    V  I+A+  + +    GK + ++  +  
Sbjct: 374 VIGLPEKLFYGTGIPAAILLFKKNKSDDN---VMFIDASRDFKA----GKNQNLLTQENI 426

Query: 450 RQILDIY 456
            +I+  Y
Sbjct: 427 AKIVATY 433


>gi|283795955|ref|ZP_06345108.1| ribosomal protein L11 [Clostridium sp. M62/1]
 gi|291076600|gb|EFE13964.1| ribosomal protein L11 [Clostridium sp. M62/1]
 gi|295090949|emb|CBK77056.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 500

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 140/329 (42%), Gaps = 40/329 (12%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I++        ++   YE+ +  F  +  +   +F TP  VV     +L        
Sbjct: 138 FTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTLVEVL-------- 189

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K   G +   YDP CG+GG    +   V +   H      +  +GQ+  P T  +    +
Sbjct: 190 KPFKGRV---YDPCCGSGGMFVQSAKFVEN---HSGNISNISIYGQDSNPTTWKLAQMNL 243

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
            IR +E D             T  KD     R  Y ++NPPF    W  DK    KE + 
Sbjct: 244 AIRGIEPD------LGPYAADTFLKDCHPTLRADYIMANPPFNLSDWGLDK---LKEDQ- 293

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G P   + +  +L H+     L P   GR  +VL++  L       GE EIR
Sbjct: 294 ----RWKYGTPPAGNANFAWLQHMI--YHLAP--AGRIGMVLANGSL--SSQSGGEGEIR 343

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + ++  DL+E IVA+PT LF+ T I   LW ++ +K  ++ GK   I+A  + T +    
Sbjct: 344 KNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQK--KQSGKTLFIDARKMGTMVN--- 398

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +K R + D    +I D Y +  +G    +
Sbjct: 399 RKLRELTDADINKISDTYEAFVDGTLENI 427


>gi|302668597|ref|YP_003833045.1| type I restriction modification system M subunit HsdM [Butyrivibrio
           proteoclasticus B316]
 gi|302397561|gb|ADL36463.1| type I restriction modification system M subunit HsdM [Butyrivibrio
           proteoclasticus B316]
          Length = 531

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 38/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ N YE+LI +F SE  + A +F TP     +   +      A+  +       +YDP 
Sbjct: 172 VLGNAYEYLIGQFASETGKKAGEFYTPHGPAQILCRI------AMLGQEEKKGLQVYDPC 225

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  +         C  + K P  +  +GQEL P T+ +    M +  +  +     +
Sbjct: 226 MGSGSLMLS-------CMHYSKEPDYIKYYGQELMPSTYNLARMNMFLHGVLPE-----N 273

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++++ G TL  D  T +   F     NPP+   W     A E   ++     +G  L   
Sbjct: 274 QHLRNGDTLDADWPTDEETEFDVVTMNPPYSANWS----AAEGFKQDERFMDYGGVLAPK 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H      L PNG    AIVL    LF G   + E  IR  LL+N  I A++
Sbjct: 330 SKADYAFLLH--GFYHLKPNG--TMAIVLPHGVLFRG---ASEGAIREILLKNGSIYAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++F+ T+I T + +L  +K  E R  V  I+A+  +     + KK+ ++ ++    
Sbjct: 383 GLPSNMFYNTSIPTCIIVL--KKHREGR-DVLFIDASQHF----EKEKKQNVMKEEHIDH 435

Query: 452 ILDIYVSREN 461
           +L++Y +R++
Sbjct: 436 VLELYKNRQS 445


>gi|99078524|ref|YP_611782.1| type I restriction-modification system, M subunit [Ruegeria sp.
           TM1040]
 gi|99035662|gb|ABF62520.1| type I restriction-modification system; M subunit [Ruegeria sp.
           TM1040]
          Length = 499

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 163/364 (44%), Gaps = 57/364 (15%)

Query: 114 IFEDFDFSSTIARLE--KAGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F+S     E  K  +L  + ++F  + ++L P  V +  ++   YE+LI RF +
Sbjct: 115 VFQDISFNSNKLGDEEQKNDILRHLLEDFAKTALDLRPSRVGNLDIIGGAYEYLISRFAA 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L  A L+DP        PG    + DPTCG+   L      + 
Sbjct: 175 TAGKKAGEFYTPAEVSEL-MARLVDP-------QPG--DDICDPTCGSASLLMKCGRLIR 224

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------ 282
           + GS           GQE    T A+    + +   E+         I+ G T+      
Sbjct: 225 EGGSK-----AYALFGQEAIGSTWALAKMNLFLHGEEN-------HQIEWGDTIRNPKLR 272

Query: 283 -SKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            S D+   + F   ++NPPF   KW  +    +K        RF  G+P  + G   F++
Sbjct: 273 TSDDML--RHFDVVVANPPFSLDKWGVESAEADK------FARFRRGIPPKTKGDYAFIL 324

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+ P  G  R A+V+    LF G   S E +IR  L+E++L++A++ LP  LFF 
Sbjct: 325 HMIETLK-PKTG--RMAVVVPHGVLFRG---SSEGKIRHKLIEDNLLDAVIGLPEKLFFG 378

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK-----RRIINDDQRRQILDI 455
           T I + + +    K ++    V  ++A+  + +  N+         +I+   Q RQ ++ 
Sbjct: 379 TGIPSAILVFRKDKADD---SVLFVDASREFVAGTNQNALDMTLIEKIVATHQTRQTVEK 435

Query: 456 YVSR 459
           Y  R
Sbjct: 436 YAYR 439


>gi|229819004|ref|YP_002880530.1| type I restriction-modification system, M subunit [Beutenbergia
           cavernae DSM 12333]
 gi|229564917|gb|ACQ78768.1| type I restriction-modification system, M subunit [Beutenbergia
           cavernae DSM 12333]
          Length = 524

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 53/365 (14%)

Query: 109 DNAKAIFEDFDFSS-----TIA-RLEKAGLLYKICKNFSGIELHPDTVPDR---VMSNIY 159
           D+ K +F+D D +S     T+A R EK   L ++      + L   T  +       + Y
Sbjct: 131 DDLKGLFDDVDVNSNKLGPTVAKRNEK---LVRLLDAIGDLNLGNGTFSENKIDAFGDAY 187

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L++ + S   +   ++ TP++V  L   + +     + K S   +  +YDP CG+G  
Sbjct: 188 EYLMQMYASAAGKSGGEYYTPQEVSELLARITV-----VGKTS---VNKVYDPACGSGSL 239

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +   G            GQE+   T+ +C   M +  +  +       +I  G
Sbjct: 240 LLKFRKVLGKGGVRQGY------FGQEINLTTYNLCRINMFLHDVGFE-----HFDIAHG 288

Query: 280 STLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL   + +  + F   +SNPP+  KW  D + +          RF P   L   S   +
Sbjct: 289 DTLIDPMHWDDEPFEAIVSNPPYSIKWAGDANPLLINDP-----RFAPAGVLAPKSKADL 343

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A++ LP D
Sbjct: 344 AFTMHMLSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRKYLIDNNFVDAVIQLPPD 396

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IAT + +L   K +     V  I+A+         G K ++   +Q+R ILD +
Sbjct: 397 LFFGTAIATCIIVLKKSKADN---GVLFIDAS---AQFVRGGNKNKLTEANQQR-ILDAF 449

Query: 457 VSREN 461
            +R++
Sbjct: 450 TTRDD 454


>gi|149185165|ref|ZP_01863482.1| type I restriction-modification system, M subunit [Erythrobacter
           sp. SD-21]
 gi|148831276|gb|EDL49710.1| type I restriction-modification system, M subunit [Erythrobacter
           sp. SD-21]
          Length = 517

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 140/318 (44%), Gaps = 43/318 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+   Y +LI RF S+  + A +F TPR V  L    L DP        PG    + DP 
Sbjct: 165 VIGETYIYLISRFASDAGKKAGEFFTPRKVSEL-LVRLADP-------QPG--NKILDPA 214

Query: 214 CGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+   L  A  +VA   G  H         GQE   +T A+    M +  L+       
Sbjct: 215 CGSSTLLVRAAEYVAGIEGKEHASQANAQVFGQEATNQTQALARMNMFLHGLD------- 267

Query: 273 SKNIQQGSTLSKDLFTGK----RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
           +  I+ G TL+   F       RF   ++NPPF  KKW  +    ++        R+  G
Sbjct: 268 NARIEWGDTLTNPKFVNGDALMRFDRIIANPPFSLKKWGHEVAGDDR------FNRYHRG 321

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  S G   F+ H+   +E      GR A++     LF  R+G+ E +IR+ L+E +L+
Sbjct: 322 VPPKSRGDYAFISHM---VESAKPREGRVAVIAPHGVLF--RSGA-EGKIRQALIEENLL 375

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + +V LP  LF  T I   + I    +      E    V  I+A+  +      GKK+  
Sbjct: 376 DGVVGLPAQLFPSTGIPVCMVIFDRAREKGGAREDADDVLFIDASREFVP----GKKQNE 431

Query: 444 INDDQRRQILDIYVSREN 461
           ++ D   +I+D + +RE+
Sbjct: 432 LSKDHLNKIVDTWRARED 449


>gi|126665439|ref|ZP_01736421.1| putative type I restriction-modification system, M subunit
           [Marinobacter sp. ELB17]
 gi|126630067|gb|EBA00683.1| putative type I restriction-modification system, M subunit
           [Marinobacter sp. ELB17]
          Length = 533

 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 188/454 (41%), Gaps = 68/454 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDLESFV 73
           +W  A+ L G  + +++  V+L    L+ +    E  + A + E   A+    +D+  F 
Sbjct: 19  LWDTADKLRGTVESSEYKHVVLSLIFLKFVSDKFEARKQALIAEGQEAY----VDMVEFY 74

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
            +    FY       +TL     ++++          I   + + K    D  FS     
Sbjct: 75  TMKNV-FYLPEHARWNTLQKQAKQDDIAIKIDTALYAIEKLNPSLKGALPDNYFSRMGLE 133

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPD----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           + K   L     N + +       PD     ++  +YE+ + +F +   +G  +F TP+ 
Sbjct: 134 VSKLAALIDSINNIATVSDQSSAGPDGNEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKC 193

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L  A +++P              +YDP CG+GG    ++  + +   + K   I   
Sbjct: 194 IVNL-LAEMIEPYQG----------KIYDPCCGSGGMFVQSVKFLRNHEGNQKDISI--- 239

Query: 243 HGQELEPETHAVCVAGMLIRRLESD----PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +GQE    T+ +    + IR + S+    P     KN  Q   L  D        + ++N
Sbjct: 240 YGQEYTATTYKLAKMNLAIRGIASNLGDVPADTFFKN--QHPDLKAD--------FIMAN 289

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K  +  D +  + +       G   P   + +  +++H+ +KL    +  G A  
Sbjct: 290 PPFNMKAWRGADELSTDPRWA-----GYDAPPTGNANYAWILHMVSKL----SAQGTAGF 340

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE- 417
           V+++  +      SGE  IR+ L+ENDL++ ++ALP  LF+ T I   LW ++  K  + 
Sbjct: 341 VMANGSMSTNT--SGEGVIRQKLIENDLVDCMIALPGQLFYTTQIPVCLWFVTKNKKAQA 398

Query: 418 -----------RRGKVQLINATDLWTSIRNEGKK 440
                      R G+   I+A ++ + I    K+
Sbjct: 399 IAGHSDSNHRNREGETLFIDARNMGSMISRTHKE 432


>gi|297587128|ref|ZP_06945773.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
 gi|297575109|gb|EFH93828.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
          Length = 500

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 153/344 (44%), Gaps = 40/344 (11%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ ++L        ++   YE+ I +F S   + A +F TP  +V     +L 
Sbjct: 131 LGEVVDLFNNLKLKEHGNSKDILGRTYEYTIAQFASLEGKNAGEFYTPTSIVKTLVEIL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
           +P +            +YDP CG GG    +   V +     +I  I + +GQE    T 
Sbjct: 190 EPYEG----------RVYDPCCGAGGMFVQSAKFVEN--HQGRINEISI-YGQEYNTNTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDA 311
            +    + I  LE D     +       T  KD  +  +  + L+NPPF  K+W  DK +
Sbjct: 237 KLAQMNLAIHGLEGDLGHGAA------DTFFKDQHSSLKADFILANPPFNLKEWGGDKLS 290

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                   E  R+  G P   + +  ++ H+   L+   +  G+  +VL++  L    A 
Sbjct: 291 --------EDSRWKYGTPPQGNANYAWMQHMIYHLD---DNTGKMGLVLANGSL---SAS 336

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E EIR  ++++DL+E I+A+P  LF+ T I+  LWIL+  K ++++ K   ++  +L 
Sbjct: 337 GKEGEIRENIIKDDLVECIIAMPDRLFYSTGISVSLWILN--KNKQQKNKTLFLDCRNLG 394

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
             I    +  R ++++   +I   Y +  NGK    L Y    Y
Sbjct: 395 HMID---RAHRDLSEEDIAKITTTYKNFVNGKDIEELGYAHAAY 435


>gi|326561037|gb|EGE11402.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis 7169]
 gi|326564412|gb|EGE14640.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis 12P80B1]
          Length = 545

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 198 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSGR-VYDPA 246

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  + V  M IR +  D      
Sbjct: 247 MGSGGFFVQTDRFIQ---AHQGNRNAISVYGQESNPTTRKLAVMNMAIRGIPFD------ 297

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   TL   L   K+  + ++NPPF  K+W  +  A +         R+  G P   
Sbjct: 298 FGDKPEDTLLNPLHIDKKMDFVMANPPFNMKEWWSESLAGDP--------RWAYGTPPQG 349

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L P G  + A++L++  +      SGE EIR+ ++  DL+EA++A
Sbjct: 350 NANFAWLQHMI--YHLSPKG--KMALLLANGSM--SSQTSGEGEIRKNIITADLVEAMIA 403

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +WI++  K + R+G+V  INAT +
Sbjct: 404 LPNQLFTNTQIPACIWIIN--KAKARKGEVLFINATQI 439


>gi|291515049|emb|CBK64259.1| Type I restriction-modification system methyltransferase subunit
           [Alistipes shahii WAL 8301]
          Length = 517

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 37/303 (12%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I +H       ++   YE+ + +F     + A +F TP  +V     +L 
Sbjct: 139 LGEVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAEGKLAGEFYTPACIVKTLVNVL- 197

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   + +   +  I  I V +GQ+  P T 
Sbjct: 198 ---------QPYKGR-VYDPCCGSGGMFVQSAQFIENHSGN--INNISV-YGQDSNPTTW 244

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDA 311
            +    + IR +E+D  +          T   D     +  + ++NPPF    W  DK A
Sbjct: 245 KMAQMNLAIRGIEADLGQ------YNADTFFNDCHPTLKADFVMANPPFNLSDWGADKLA 298

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            +         R+  G P   + +  ++ H+ +   L P G  RA +VL++  L      
Sbjct: 299 DDV--------RWKYGTPPNGNANFAWIQHIIH--HLAPTG--RAGVVLANGSL--SSQS 344

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            GE EIRR L+E DL++ ++A+P  LF+ T I   +W  +  K ++++GK   I+A +L 
Sbjct: 345 GGEGEIRRKLVEADLVDCVIAMPPQLFYTTQIPVSIWFFN--KNKQQKGKTLFIDARNLG 402

Query: 432 TSI 434
           T +
Sbjct: 403 TMV 405


>gi|228475644|ref|ZP_04060362.1| N-6 DNA methylase [Staphylococcus hominis SK119]
 gi|228270426|gb|EEK11861.1| N-6 DNA methylase [Staphylococcus hominis SK119]
          Length = 238

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 103/175 (58%), Gaps = 14/175 (8%)

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            I+ +   LF+G  G GES IR++++END +E I+ L  DLF+ T I+TY+WI++  K+ 
Sbjct: 2   TIIHNGFALFSGNPGGGESLIRQYVIENDWLEDIIQLSNDLFYNTEISTYIWIITKNKSP 61

Query: 417 ERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKF--------SRM 467
           +R+GKVQLI+A++++ +  +N GKKR  I+   R  I+  Y   +N ++        S++
Sbjct: 62  KRQGKVQLIDASNMYENRHKNIGKKRVDISKACREMIVQAYGEFDNKEYRFDDRTVESKI 121

Query: 468 LDYRTFGYRRIKVLRPLRM---SFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           L+  +FG+ R+ + RP R    + +  K G   +  D + R    +++ F  +++
Sbjct: 122 LNNESFGFTRVTIERPERNENGNIVYKKNG--NMSIDTSLRDTEDINEYFQREVI 174


>gi|160894140|ref|ZP_02074918.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50]
 gi|156864173|gb|EDO57604.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50]
          Length = 500

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 142/332 (42%), Gaps = 40/332 (12%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I++        ++   YE+ +  F  +  +   +F TP  VV     +L        
Sbjct: 138 FTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTLVEVL-------- 189

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K   G +   YDP CG+GG    +   + +   H      +  +GQ+  P T  +    +
Sbjct: 190 KPFKGRV---YDPCCGSGGMFVQSAKFIEN---HSGNISNISIYGQDSNPTTWKMAQMNL 243

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
            IR +E D             T   D     R  Y ++NPPF    W  DK    KE + 
Sbjct: 244 AIRGIEPD------LGTYAADTFLDDRHPTLRADYIMANPPFNLSDWGLDK---LKEDQ- 293

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G+P   + +  +L H+     L P   GR  +VL++  L       GE EIR
Sbjct: 294 ----RWKYGIPPAGNANFAWLQHMI--YHLAP--AGRIGMVLANGSL--SSQSGGEGEIR 343

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + ++  DL+E IVA+PT LF+ T I   LW ++ +K  ++ G+   I+A  +   +    
Sbjct: 344 KNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQK--KQPGRTLFIDARKMGKMV---S 398

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           +K R + DD  ++I D Y +  +G    +  Y
Sbjct: 399 RKLRELTDDDIKKISDTYEAFVDGTLENVKGY 430


>gi|310659274|ref|YP_003936995.1| type I restriction modification system protein hsdmi [Clostridium
           sticklandii DSM 519]
 gi|308826052|emb|CBH22090.1| Type I restriction modification system protein HsdMI [Clostridium
           sticklandii]
          Length = 515

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 204/510 (40%), Gaps = 105/510 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L + IWK A D+ G     DF + +L  TL  R         S    KY+  G  +I+
Sbjct: 8   AELQSQIWKIANDVRGSVDGWDFKQYVLG-TLFYRF-------ISENFSKYIEAGDESIN 59

Query: 69  LESF-------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SD 109
                            +K  GY  Y +  +  +   + NT  +L + +A+       S 
Sbjct: 60  YAELPDDIITSEIKDDAIKTKGYFIYPSQLFE-NIAKTANTNESLNTDLAAIFSAIESSA 118

Query: 110 NA-------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVP 151
           N        K +F DFD +S   RL     +K   L  + K  +G++       H D   
Sbjct: 119 NGYPSELDIKGLFADFDTTSN--RLGNTVKDKNSRLAAVIKGVAGLKFGEFEDNHIDLFG 176

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D      YE LI  + +   +   +F TP+ V +L   L +             I  +YD
Sbjct: 177 DA-----YEFLISNYAANAGKSGGEFFTPQSVSNLIAKLAI--------HGQSSINKIYD 223

Query: 212 PTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           P  G+G  L  A      H+ + G +          GQE+   T+ +    M +  +  D
Sbjct: 224 PAAGSGSLLLQAKKQFDEHIIEDGFY----------GQEINHTTYNLARMNMFLHNINYD 273

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   I  G+TL    +   K F   +SNPP+   W    D            RF P
Sbjct: 274 KFH-----IALGNTLLDPHYGDDKPFDAIVSNPPYSVNWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N
Sbjct: 324 AGVLAPKSKADFAFVLHSLSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDN 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRR 442
           + +E + +L  +LFF T+IA  + +LS  KT+    K Q I+A+  D +    N      
Sbjct: 377 NFVETVTSLAPNLFFGTSIAVNILVLSKHKTD---NKTQFIDASGADFYKKETN----NN 429

Query: 443 IINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           ++ +    +I+ I+ ++E+    ++ +DY 
Sbjct: 430 VLTEKHIEEIMTIFDTKEDIPHVAKCIDYE 459


>gi|188532536|ref|YP_001906333.1| Type I restriction-modification system, M subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188027578|emb|CAO95425.1| Type I restriction-modification system, M subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 494

 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 179/400 (44%), Gaps = 56/400 (14%)

Query: 77  GYSFYN-TSEYSLSTLGS-TNTRNNL--ESYIASFSDNAKAIFEDFDFSSTIARLEKA-- 130
           G SFY+ +SE +   +G   NT  +   E+   S       IF D DF+S   RL  A  
Sbjct: 72  GMSFYSISSEINHGGIGERINTALSCYDEAIFQSLYKCDSRIFSDIDFTSD--RLGPARG 129

Query: 131 --GLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
               L ++   F+  E   +   D    +S I   L  +  SE      DF TP  V  L
Sbjct: 130 RDAFLSELMHIFNSREFQFNYYNDGADRISLICSILFEKTASEAGLRGGDFYTPHGVSAL 189

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN---HVADCGSHHKIPPILVPH 243
            + L+          SP    ++YDP CGTG  L  A++   ++  C +H+        +
Sbjct: 190 LSELV----------SPRAGDSIYDPACGTGSLLLSAVHKIPYIEKCQNHN-------VY 232

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           GQE+   +  +    M +  + S   +  D+ +N Q  ++ S+      +F   LSNPPF
Sbjct: 233 GQEIIKVSWNIAYINMFLHGVYSCKIKWGDVFQNPQFKNSKSE----LAKFDVVLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                 +K+A+     +   GRF  G+P  S     F++H+   L+   +  GR A+V+ 
Sbjct: 289 SMSNWGNKEAL-----SDRFGRFAMGVPPQSKADYAFILHMIASLK---DDTGRMAVVVP 340

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G   + E+ IR  L++ +L++A++ LP  LF  TNI+T + I    K +     
Sbjct: 341 HGVLFRG---ANEALIRMNLIKENLLDAVIGLPERLFLSTNISTAILIFRKNKMD---SN 394

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           V  I++T L+ +     K R  I  +  ++IL  +  R++
Sbjct: 395 VLFIDSTILFEN----SKGRNYITGEHIKRILKAFHERQD 430


>gi|255525760|ref|ZP_05392691.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|255510583|gb|EET86892.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 412

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 166/371 (44%), Gaps = 67/371 (18%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + IF D +   +  RL     E+A  L  I K   GIE   D   D ++  IYE+LI +F
Sbjct: 19  RGIFNDINLGDS--RLGSSTNERAKSLNNIVKLVDGIEYKGDDGKD-ILGEIYEYLIGQF 75

Query: 167 GSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   +   +F TP  V  +   ++   ++  D  F         LYDPT G+G  L   
Sbjct: 76  AASAGKKGGEFYTPHQVSKILAKVVTSGVEKSDEFF--------NLYDPTMGSGSLLLTV 127

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN---IQQGS 280
              +   G+  K        GQEL   T+ +    +++         D+S N   +    
Sbjct: 128 GQELP-KGTPMKY------FGQELNTTTYNLARMNLMMH--------DVSYNNMVLNNAD 172

Query: 281 TLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           TL  D   G         + F   ++NPP+  KW+ D+  + K+ +  + G+  P     
Sbjct: 173 TLESDWPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSDYGKLAPA---- 227

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H    L    N  G  AIVL    LF G A   E +IR+ L+E + ++ ++
Sbjct: 228 SKADYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLIEKNYLDTVI 280

Query: 392 ALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP +LF+ T+I T + +   NRKT++    +  I+A++ +     +GK +  +ND+   
Sbjct: 281 GLPANLFYGTSIPTTILVFKKNRKTKD----ILFIDASNDFE----KGKNQNNLNDENID 332

Query: 451 QILDIYVSREN 461
           +I++ +  R++
Sbjct: 333 KIINTFKERKD 343


>gi|229542843|ref|ZP_04431903.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229327263|gb|EEN92938.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 854

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 143/317 (45%), Gaps = 51/317 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F  E  + A +F TPR V  +   ++    D         I+++YDPT
Sbjct: 179 VLGDAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIVARTSD---------IKSIYDPT 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L     H+ +    +     L  +GQE    T+ +    +L+  +     R   
Sbjct: 230 VGSGSLLLTVGKHLDEDAQKN-----LSYYGQEKNTATYNLTRMNLLLHGV-----RPEK 279

Query: 274 KNIQQGSTLSKDL-------FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFG 325
             I+ G TLS+D          G +F   + NPP+  K W +    V          RF 
Sbjct: 280 MTIKNGDTLSQDWPEDPERPNEGVQFDAVVMNPPYSAKNWNRSGLKVSDP-------RFE 332

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               LP  S G   FL+H      L  NG    AIVL    LF G   S E EIR+ LL+
Sbjct: 333 VAGVLPPDSKGDFAFLLH--GLFHLGQNG--TMAIVLPHGVLFRG---SAEGEIRKRLLQ 385

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            + I+AI+ LP++LF  T I   + IL  NRK ++    V +I+A+  +  +     K+ 
Sbjct: 386 KNYIDAIIGLPSNLFTNTGIPVVVIILKKNRKFDD---PVLIIDASHSFIKV----GKQN 438

Query: 443 IINDDQRRQILDIYVSR 459
           ++ +    +I+D YV R
Sbjct: 439 VLQEKDIAKIVDTYVER 455


>gi|306843200|ref|ZP_07475813.1| type I restriction-modification system, M subunit [Brucella sp.
           BO2]
 gi|306286610|gb|EFM58183.1| type I restriction-modification system, M subunit [Brucella sp.
           BO2]
          Length = 741

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 183/412 (44%), Gaps = 62/412 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPD---DALFKESPGMIR 207
           D ++ + YE+L+R F +E  +    F TP +V   LA  + ++ D   DA          
Sbjct: 60  DDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVIGINKDTKRDA---------- 109

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+YDPTCG+G  L    +           P  L  +GQE E  T A+    M++   +SD
Sbjct: 110 TVYDPTCGSGSLLLKVNDEA---------PNGLSLYGQEKEQATVALARMNMILHGSDSD 160

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL 321
                   + Q  TLS   +  K      F + ++NPPF  K W       + E +    
Sbjct: 161 -------ELWQDDTLSAPHWRDKNGKLRTFDFAVANPPFSLKSWSNGFTPSDDEFE---- 209

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RF  G P   +G   FL+H+   L+      GR A++L    LF G A   E++IRR L
Sbjct: 210 -RFEYGQPPEKNGDYAFLLHIIKSLK----STGRGAVILPHGVLFRGNA---EADIRRNL 261

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +    I+ I+ LP +LF+ T I   + I+ ++ T      + +I+A+        +G K 
Sbjct: 262 VRQGYIKGIIGLPANLFYGTGIPACI-IVIDKSTAGPERPIFMIDAS---KGFVKDGNKN 317

Query: 442 RIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYR---RIKVLRPLRMSFILDKTGL- 495
           R+   D  + I+D++ +R+    ++SR++ Y     +    + + R +  S   D   L 
Sbjct: 318 RLRAQDIHK-IVDVF-NRQLVVDRYSRLVPYDEIAKKNDFNLNIPRYIDASEPEDIHDLD 375

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
           A L   I  R +  L +++W D+   + + ++  G    + K  I+S   K 
Sbjct: 376 AHLNGGIPDRDIEAL-KAYW-DVFPSLRKTLFADGARPGYAKALIESRAIKA 425


>gi|11500027|ref|NP_071277.1| type I restriction-modification enzyme, M subunit [Archaeoglobus
           fulgidus DSM 4304]
          Length = 508

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 168/373 (45%), Gaps = 43/373 (11%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  +   + + +  DF       +   +L ++ + FSG+ L      D ++ + YE LI
Sbjct: 111 LAEKNPELQGVVDRLDFLEFTRARDNFDILVQLFELFSGLNLG--RASDSILGDAYEWLI 168

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             F  + ++  E F TP +VV L   ++           P  + ++YDP  G    L  A
Sbjct: 169 GYFAPQKAKEGEVF-TPSEVVELIVRIV----------DPKPMDSVYDPAAGYARMLIRA 217

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            ++V +     ++  + + +GQE+ P T+A+     ++  +     +D+  N+  G TL 
Sbjct: 218 YDYVKEKYGEEEVRKLFL-YGQEVNPTTYAIAKMNAIVHGI-----KDI--NLVVGDTLK 269

Query: 284 KDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKISDGSML 337
              F    T ++F   ++NPP    W +D    E+E K  E    RF  G          
Sbjct: 270 NPRFKEGETFRKFDIVIANPP----WNQDGYG-EEELKKAEFYDERFRYGFTPKQSADWA 324

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+        +   +  +V+ +  LF G     E  IR+ ++E+DLIE ++ LP  L
Sbjct: 325 WIQHML------ASAKKKVGVVIDNGCLFRG---GKEGAIRKAVVEDDLIECVILLPEKL 375

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T     + I + +K E R+GK+  INA++ +     E +K   + +    +I+  Y 
Sbjct: 376 FYNTGAPGAIIIFNKQKPESRKGKILFINASNEYEK-HPEVRKLNRLGEKHIEKIVSAYR 434

Query: 458 SRENGK-FSRMLD 469
             ++G  F R++D
Sbjct: 435 EFKDGDGFCRVVD 447


>gi|78046069|ref|YP_362244.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034499|emb|CAJ22144.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 538

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 173/387 (44%), Gaps = 68/387 (17%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFS----GIELHPDTVPDRVMS 156
           SF    + +F + + +S     +K G  Y     K+C   S    G+ L   T     + 
Sbjct: 133 SFESEFQGLFSEINLAS-----DKLGRKYDDRNAKLCSIISEIARGMALSTKT---DSLG 184

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESP-GMIRTLYDPTC 214
           + YE+LI +F +   + A +F TP+++ ++ +A++ LD  +   K  P G + +++D  C
Sbjct: 185 DAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEP--KTGPRGKLDSVFDFAC 242

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +  N +   G       I   +GQE    T+ +    ML+  +     +D   
Sbjct: 243 GSGSLLLNIRNRMTSSGG-----SIGKIYGQEYNVTTYNLARMNMLLHGV-----KDTEF 292

Query: 275 NIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKD----KDAVEKEHKNGELG 322
            I  G TL  D             RF   ++NPPF  +WE      +DA  K H      
Sbjct: 293 EIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQDARFKNH------ 346

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   S     FL+H    L+      G  AI+L    LF G     E++IRR LL
Sbjct: 347 ----GVAPKSAADFAFLLHGLQYLK----DDGVMAIILPHGVLFRG---GKEADIRRKLL 395

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA + +T     GK++ 
Sbjct: 396 DDGHIDTVIGLPPNLFYSTGIPVCILVLKKCKKPD---DVLFINACEQFT----RGKRQN 448

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRML 468
            + D+  ++I+D Y +R E  ++S+ +
Sbjct: 449 QLTDEHIKRIVDTYKNRDEQERYSKRI 475


>gi|57790490|gb|AAW56185.1| Cj81-126 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 149

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 90/144 (62%), Gaps = 5/144 (3%)

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + S LFN  + SG   IR+ ++END +EAIVALPT++F+ T I T++WI++N+K E +
Sbjct: 2   VHNGSSLFN--SDSGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKPEHK 59

Query: 419 RGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +GKVQLINAT  + ++ ++   G K+  +  +   +I  +++   + K  ++LD   FGY
Sbjct: 60  KGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGY 119

Query: 476 RRIKVLRPLRMSFILDKTGLARLE 499
            +I + +P  +  + D    A+L+
Sbjct: 120 TKIIIEKPKSIEALKDDEKFAKLK 143


>gi|270157704|ref|ZP_06186361.1| putative type I restriction-modification system M subunit
           [Legionella longbeachae D-4968]
 gi|269989729|gb|EEZ95983.1| putative type I restriction-modification system M subunit
           [Legionella longbeachae D-4968]
          Length = 531

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 144/317 (45%), Gaps = 43/317 (13%)

Query: 143 IELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           I  H D +  + ++ ++YE+ + +F +   +    F TP+ +V+L   ++ +P    FK 
Sbjct: 170 IPFHYDGMKSKDILGHVYEYFLGQFAAAEGKKGGQFYTPKSIVNLIVEMV-EP----FK- 223

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  +YDP  G+GGF   +   + +   H      +  +GQE  P T  +    M I
Sbjct: 224 -----GRVYDPAMGSGGFFISSEKFIEE---HQGRLGDISVYGQESNPTTWRLAAMNMAI 275

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNG 319
           R +      D +   +   T +KD     R  + L+NPPF  K  W+   D         
Sbjct: 276 RGI------DFNFGKEPADTFTKDQHPDLRADFVLANPPFNMKEWWDGSLDGD------- 322

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              R+  G P  ++ +  ++ H+ +     PNG     +VL++  L +    SGE E+R 
Sbjct: 323 --SRWKYGQPAENNANFAWMQHMLH--HTSPNG--VVGLVLANGSLSSNT--SGEKEVRE 374

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +++ DL+EAIVALP+ LF  T I   +WIL+  K ++   K   I+A      I    +
Sbjct: 375 SIIKADLVEAIVALPSQLFSNTTIPACIWILNKNKAQKE--KTLFIDARQFGYMI---DR 429

Query: 440 KRRIINDDQRRQILDIY 456
           K+R   D+   +I  ++
Sbjct: 430 KQRAFTDNDIHEIAKVF 446


>gi|331087343|ref|ZP_08336411.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408369|gb|EGG87844.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 520

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 155/355 (43%), Gaps = 45/355 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRRFGS 168
            +F+D+D +S       A    K+ K  +G+ E++   V D       + YE+L+  + S
Sbjct: 136 GLFDDYDVNSNKLGATVAKRNEKLVKLLNGVGEMNLGDVKDHSIDAFGDAYEYLMTMYAS 195

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP DV  L T L               I  +YDP CG+G  L  A   + 
Sbjct: 196 NAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGSGSLLLKAEKILG 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLF 287
                +        +GQE+   T+ +C   M +  +  D       NI  + + L+   +
Sbjct: 248 KDAIRNGF------YGQEINITTYNLCRINMFLHDVGFDKF-----NIACEDTLLAPQHW 296

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANK 345
             + F   +SNPP+  KW    + +          RF P   L   S   M F+MH  + 
Sbjct: 297 DDEPFELIVSNPPYSIKWAGTDNPLLINDP-----RFSPAGVLAPKSKADMAFIMHSLSW 351

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L   PNG   AAIV     ++ G A   E +IR++L++N+ ++ I+ LP++LFF T+IAT
Sbjct: 352 L--APNG--TAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCIIQLPSNLFFGTSIAT 404

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + ++   K +    K   I+AT     + N  K    +  +   +I+D +  RE
Sbjct: 405 CIMVMKKNKAD---NKTLFIDATSECVKVTNNNK----LTPENIDRIVDGFAKRE 452


>gi|325129941|gb|EGC52740.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis OX99.30304]
          Length = 513

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 188/467 (40%), Gaps = 83/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y +  + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 KF-----HIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +
Sbjct: 377 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGSFF 420


>gi|188527305|ref|YP_001909992.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188143545|gb|ACD47962.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 529

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 162/364 (44%), Gaps = 55/364 (15%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 137 ENVKGLFADLDVNSNKLGSSHKNRVEK---LNKILQAIGGMQLGDYQKSGID-VFGDAYE 192

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L
Sbjct: 193 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLL 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQG 279
                 + D              GQE+   T+ +C   M +  +      + SK +I  G
Sbjct: 245 LQFSKVLGDKNVSKGY------FGQEINLTTYNLCHINMFLHDI------NYSKFHIAHG 292

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL          F   +SNPP+  KW  + + +    +     RF P   L   +   +
Sbjct: 293 DTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPILINDE-----RFSPAGVLAPKNAADL 347

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ + I+ ++ALP +
Sbjct: 348 AFTMHMLSYL----SNSGTCAIVEFPGVLYRGNA---EAKIREHLVKENFIDCVIALPDN 400

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y
Sbjct: 401 LFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILQTY 453

Query: 457 VSRE 460
             R+
Sbjct: 454 TERK 457


>gi|325200488|gb|ADY95943.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
          Length = 513

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 188/467 (40%), Gaps = 83/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHH 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 -----QFHIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +
Sbjct: 377 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFF 420


>gi|156978013|ref|YP_001448919.1| type I restriction enzyme M protein [Vibrio harveyi ATCC BAA-1116]
 gi|156529607|gb|ABU74692.1| hypothetical protein VIBHAR_06810 [Vibrio harveyi ATCC BAA-1116]
          Length = 526

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 52/404 (12%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           +SF   AG +F++  E        +     L +   +     K +F+D  F++     EK
Sbjct: 94  QSFKIPAGSTFWDLYEARFEAGNGSRIDQALHAIEEANGTKLKGVFQDISFNTDKLGDEK 153

Query: 130 A--GLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
               +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F TP +V 
Sbjct: 154 QKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPPEVS 213

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L + +L           P    ++ DP CG+G  L      V       K   +    G
Sbjct: 214 DLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQKNFGGSKQYALF---G 260

Query: 245 QELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           QE    T ++    M +      R+E  D  R+       G  L  D+ T        +N
Sbjct: 261 QEAIGSTWSLAKMNMFLHGEDNHRIEWGDTIRNPKLQDSNGGLLHFDVVT--------AN 312

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF   KW  +      + +N   GRF  G+P  + G   F+ H+   L+ P  G  R  
Sbjct: 313 PPFSLDKWGHE------DAENDHFGRFRRGVPPKTKGDYAFISHMIETLK-PETG--RMG 363

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+    LF     S E +IR+ L+E +L++A++ LP  LFF T I   + I   +K   
Sbjct: 364 VVVPHGVLFRA---SSEGKIRKQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKKKKD-- 418

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
               V  I+A+  + S    GK + ++  +   +I+  Y S +N
Sbjct: 419 -TNDVMFIDASREFKS----GKNQNVLTAENIDKIVKTYRSGDN 457


>gi|47459121|ref|YP_015983.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
 gi|47458450|gb|AAT27772.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
          Length = 524

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 140/313 (44%), Gaps = 40/313 (12%)

Query: 112 KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRF 166
           K +F+D + +S+       E+   L K+  N   ++L    D   D    + YE+L+  +
Sbjct: 138 KGLFDDINLNSSKLGSTVNERNEKLTKLINNIGEMKLGNFKDNSID-AFGDAYEYLMSMY 196

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   +   ++ TP++V  L T + L   +         I  +YDP CG+G  L   +N 
Sbjct: 197 ASNAGKSGGEYYTPQEVSELLTKITLIGKNE--------INKVYDPACGSGSLL---LNF 245

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
               G            GQE+   T+ +C   M +  +  +       NI QG TL+  L
Sbjct: 246 AKILGKEKVRQGFF---GQEINQTTYNLCRINMFLHDINYNKF-----NISQGDTLTNPL 297

Query: 287 FTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLA 343
               + F   +SNPP+  KW    + +          RF P   L   S   + F+MH  
Sbjct: 298 HNKFEPFEAIVSNPPYSIKWAGKSNPLLINDP-----RFSPAGVLAPESKADLAFVMHSL 352

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L       G AAIV     ++  R G+ E +IR++L++N+ I+AI+ LP +LFF T+I
Sbjct: 353 SYLA----SNGTAAIVTFPGVMY--RKGA-EEKIRKYLIDNNFIDAIIQLPENLFFGTSI 405

Query: 404 ATYLWILSNRKTE 416
           AT + +L   K E
Sbjct: 406 ATCVLVLKKNKKE 418


>gi|308389007|gb|ADO31327.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha710]
 gi|325135951|gb|EGC58561.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M0579]
 gi|325207870|gb|ADZ03322.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 514

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 189/467 (40%), Gaps = 83/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L  TL  R         S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y +  + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGSFF 421


>gi|237755861|ref|ZP_04584457.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691972|gb|EEP60984.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 506

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 154/330 (46%), Gaps = 50/330 (15%)

Query: 140 FSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           F  IEL  + V ++   ++  ++E+ + +F     +    F TP+ VV L   ++     
Sbjct: 140 FDNIEL--EAVKEKSADILGYVFEYFLGQFALAEGKKGGQFYTPKSVVELLVEMI----- 192

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P   R ++DP CG+GG    +   V       KI  I + +GQE    T  +C 
Sbjct: 193 -----QPFKGR-VFDPCCGSGGMFVQSEKFV--LAHQGKIDDISI-YGQESNQTTWKLCK 243

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             + IR ++S   +  S    +GS L+ D     +  Y L+NPPF +K E  ++ +E + 
Sbjct: 244 MNLAIRHIDSSQVKWNS----EGSLLN-DAHKDLKADYILANPPFNQK-EWGREYLENDP 297

Query: 317 KNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                 R+  G+P   + +      F+ HL+NK        G+A  VL+   L + +   
Sbjct: 298 ------RWQYGIPPAGNANYAWIQHFIYHLSNK--------GKAGFVLAKISLTSKQ--K 341

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E EIR+ L+E DL+E IV LP  LF    I   LW ++  K ++R+G++  I+A D+  
Sbjct: 342 EEYEIRKNLIEADLVECIVNLPGKLFLNAPIPVCLWFIN--KNKKRKGQILFIDARDMGE 399

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            I    ++ R++  +  R+I D Y   + G
Sbjct: 400 LI---NRRLRVLRPEDIRKIADTYHEWQKG 426


>gi|309972663|gb|ADO95864.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae
           R2846]
          Length = 514

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 198/490 (40%), Gaps = 88/490 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A D+ G     DF + +L     R         +E    +V    L    
Sbjct: 9   AELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAQLPDEI 68

Query: 65  SNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASF--SDNA 111
              D+++  +K  GY  Y +  +      + N  N          ++E+    F    + 
Sbjct: 69  ITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSATGFPSEQDI 128

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYE 160
           K +F DFD +S   RL     +K   L  + K  + ++       H D   D      YE
Sbjct: 129 KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA-----YE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L
Sbjct: 182 YLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLL 233

Query: 221 TDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
             A      H+ + G            GQE+   T+ +    M +  +  D       +I
Sbjct: 234 LQAKKQFDEHIIEEGFF----------GQEINHTTYNLARMNMFLHNINYDKF-----DI 278

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKI 331
             G+TL    F   K F   +SNPP+  KW    D   +  E       RF P   L   
Sbjct: 279 ALGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-------RFAPAGVLAPK 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++
Sbjct: 332 SKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVI 384

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           AL  +LF+ T+IA  + +LS  K   +    Q I+A+ L+ S  N      ++ ++   Q
Sbjct: 385 ALAPNLFYGTSIAVNILVLSKHKPNTQ---TQFIDASGLFKSATN----NNLLEEEHIEQ 437

Query: 452 ILDIYVSREN 461
           IL ++  +E+
Sbjct: 438 ILKLFADKED 447


>gi|325144135|gb|EGC66442.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240013]
 gi|325203906|gb|ADY99359.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240355]
 gi|325206332|gb|ADZ01785.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M04-240196]
          Length = 513

 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 187/467 (40%), Gaps = 83/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEIQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTR--NNLESYI 104
             G S+ID  +              VKV GY  Y    + +++     N     NL+   
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNVAAKAHQNEELNTNLKEIF 111

Query: 105 ASFSDNA---------KAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
            +   +A         K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 -----QFHIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +
Sbjct: 377 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFF 420


>gi|48477150|ref|YP_022856.1| type I restriction-modification system methylation subunit
           [Picrophilus torridus DSM 9790]
 gi|48429798|gb|AAT42663.1| type I restriction-modification system methylation subunit
           [Picrophilus torridus DSM 9790]
          Length = 576

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 173/370 (46%), Gaps = 43/370 (11%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           IA  + + K + ++ DF +     E + +L ++ + FS  EL+ +  PD ++ + YE ++
Sbjct: 186 IAEMNPDLKNVIDNIDFMTFTTNSENSQILRQLVELFSEQELN-NVSPD-ILGDAYEWIL 243

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F  + ++  E + TPR+V+ L   LL DP        PG    +YDP CGT G L  A
Sbjct: 244 RYFLPQKAKEGEIY-TPREVIKLLMNLL-DP-------KPG--DYIYDPACGTAGMLITA 292

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL- 282
             +V D         + + +GQE     +AV    + I  ++         N+  G TL 
Sbjct: 293 YYYVKDKYGKDYANKLFL-YGQEANTTIYAVSKMNLYIHGIDD-------TNLSSGDTLL 344

Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLM 340
             K++   K F   ++NPP    W +D    E   K GE L R+  G    S     ++ 
Sbjct: 345 HPKNIDENK-FDIVVANPP----WNQDG-YDENVLKTGEYLNRYKYGFTNSSSADWAWIQ 398

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+            +  I+L +  LF  R+G  E  IR  +++ND +E+++ LP  +F+ 
Sbjct: 399 HML------YTSKSKVGIILDTGSLF--RSGK-ELAIRSKIIDNDFVESVILLPEKIFYN 449

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T   + + IL+  K ++ R K+  I+A+  +     E +K   ++DD   +I + Y   +
Sbjct: 450 TGSPSVIIILN--KNKKIRNKILFIDASKEFIK-HPEIRKLNTLSDDNINKITEAYKQFK 506

Query: 461 N-GKFSRMLD 469
           N   F+ ++D
Sbjct: 507 NIDNFASVVD 516


>gi|219870605|ref|YP_002474980.1| Type I restriction-modification system methyltransferase subunit
           [Haemophilus parasuis SH0165]
 gi|219690809|gb|ACL32032.1| Type I restriction-modification system methyltransferase subunit
           [Haemophilus parasuis SH0165]
          Length = 562

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 214 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML----------EPYKGR-IYDPA 262

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       + +   H      +   GQE  P T  +    M IR +E D  +   
Sbjct: 263 MGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKG-- 317

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T S      K+  + ++NPPF  K W  +  A +         R+  G+P   
Sbjct: 318 ----NADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDP--------RWQYGIPPEG 365

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  R A++L++  + +    + E EIR+ +L+ DL+EA++A
Sbjct: 366 NANFAWLQHMI--YHLSPNG--RMALLLANGSMSSNT--NNEGEIRKNILKADLVEAMIA 419

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP+ LF  T I   +WIL+  K + R+G+V  I+A  L
Sbjct: 420 LPSQLFTNTQIPACIWILN--KNKARKGEVLFIDARQL 455


>gi|2581810|gb|AAC25972.1| N6 adenine methylation (M) subunit homolog [Mycoplasma pulmonis]
          Length = 520

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 172/384 (44%), Gaps = 50/384 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDF----DFSS-TIARL--EKAGLLYKICKNFSGIELHPDTV 150
           N +ES  +  +D  K  F+D     DFS+  +  +  EK   +  I +  + + L  D V
Sbjct: 114 NKIESINSELNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIEEINTLNLSMDEV 173

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 N YE+L+  F S+  + A +F TP  V  L   ++              I   Y
Sbjct: 174 DH--FGNTYEYLLSEFASDAGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAY 223

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L    N V   G ++KI      +GQE++  T+ +     ++R +   P  
Sbjct: 224 DPACGSGSLLIKLANKV---GKYNKI------YGQEVKTATYNLARMNFILRGV---PFS 271

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            L  +++ G TL   L   +   F   ++NPPF +KW   ++  +    N       P L
Sbjct: 272 KL--DLRSGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNP-----YPSL 324

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL H+     +  + G  A++   S  + +  +   E +IR+++++ + I+
Sbjct: 325 APKSYADFAFLQHML--FHVNKDNGIIASVF--SLGILSRISPKAEEDIRKYIIDKNYID 380

Query: 389 AIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            I+ LP +LF+ T I + + +   N+ T ++R  + +INAT  + +     KK+  ++D+
Sbjct: 381 TIIFLPPNLFYNTGIESCIIVARKNKPTNDKR--IFMINATKEFQN----AKKQNTLSDE 434

Query: 448 QRRQILDIYVS-RENGKFSRMLDY 470
              +I   +   RE   FS+ + Y
Sbjct: 435 NINRIFSAWKEKREEENFSKYISY 458


>gi|189426563|ref|YP_001953740.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189422822|gb|ACD97220.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 486

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 128/287 (44%), Gaps = 57/287 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++   +   GA  + TPR ++    A +           P  ++T+ DP CG
Sbjct: 127 GDLYEGLLQKNAEDTKSGAGQYFTPRHLIDAMVACI----------RPEPLKTIADPACG 176

Query: 216 TGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           TGGF   A   +   GS           HK       HG E+ P T  +C+  + +  + 
Sbjct: 177 TGGFFLGAHKWLTRPGSSLDKKQKEFLRHK-----TFHGNEIVPNTRRLCLMNLFLHNI- 230

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEH 316
                D   N+ +   L  +    +RF Y L+NPPFGKK          E+DKDA+  E 
Sbjct: 231 --GELDGEPNVDRSDALIAE--PKQRFDYVLANPPFGKKSSMTFTNEEGEEDKDALTYER 286

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           ++             S+  + FL H+A+ L+      G+AA+VL  + LF G AG    +
Sbjct: 287 QD--------FWETTSNKQLNFLQHIASMLK----ETGKAAVVLPDNVLFEGGAG---EK 331

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           IR+ LLEN  +  ++ LPT +F+   +   +     R    + GK+Q
Sbjct: 332 IRKKLLENCDVHTVLRLPTGIFYAQGVKANVVFFDARP---KDGKIQ 375


>gi|255011913|ref|ZP_05284039.1| type I restriction-modification system methylation subunit
           [Bacteroides fragilis 3_1_12]
 gi|313149747|ref|ZP_07811940.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138514|gb|EFR55874.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 512

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 179/436 (41%), Gaps = 59/436 (13%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNIDLES 71
           +F+W  A  L G      + + I P    +R+ +   E     V E  + + G  ++   
Sbjct: 22  SFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGKQVEDLP 81

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNL-ESYIASFSDNA------------KAIFEDF 118
                G  + +  E +       N  N L E++IA    N             + IF   
Sbjct: 82  IRIPEGAHWRDVREVT------ENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++  + ++  + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPDS-IITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G   +   
Sbjct: 195 TNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGDEWQSVQ 244

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
           +    GQE+   T ++    + +  +E     D S  I    TL    F      ++F  
Sbjct: 245 VF---GQEVNGLTSSIARMNLYLNGVE-----DFS--IVCADTLEHPAFLDGSHLRKFDI 294

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPP+  K+W ++K        N + GR   G P        F+ H+   +       
Sbjct: 295 VLANPPYSIKEWNREK------FMNDKWGRNFLGTPPQGRADYAFIQHILASMN---EKN 345

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR AI+L    LF       E +IR+ L+ +D +EA++ L  +LF+ + +   +   +  
Sbjct: 346 GRCAILLPHGILFRQE----EKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACILFCNKN 401

Query: 414 KTEERRGKVQLINATD 429
           K +  + K+  INA +
Sbjct: 402 KPQHLKDKIIFINAIN 417


>gi|237654635|ref|YP_002890949.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625882|gb|ACR02572.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 356

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 18/161 (11%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL- 186
           E+AGLLY + + F+ IE HP  V +  M  ++E LIR+F    +E A +  TPR+++ L 
Sbjct: 58  EQAGLLYLVVEKFAHIEPHPRRVDNVHMGLVFEELIRKFAEISNETAGEHFTPRELIRLM 117

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-HKIPP--ILVPH 243
            + L ++ D+AL K  PG++RT+YDPT GTG   T  M  VA  G H H+I P   L   
Sbjct: 118 VSPLFIEDDEALSK--PGIVRTIYDPTAGTG---TGRMLSVA--GEHLHEIKPGARLTMF 170

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           GQEL PE++A+C A MLI+  +        ++I  G+TLS+
Sbjct: 171 GQELNPESYAICKADMLIKGQD-------VRSIVLGNTLSE 204



 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 8/86 (9%)

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + ENVP  E +Q +F REV  H PDA+ID       DK   R+GYEI  NR FY ++P
Sbjct: 278 LRDAENVPLFEDVQAWFEREVLSHAPDAWIDH------DKT--RIGYEIPLNRHFYVFEP 329

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMA 672
            R L +IDA+LK    +I  ++E +A
Sbjct: 330 PRPLAEIDADLKRSMDRIKQMIEGLA 355



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 37/46 (80%)

Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
          +L+  IW  A+ L GDFK +++G+VILPFT+LRRL+C L PT++AV
Sbjct: 5  ALSALIWSVADLLRGDFKQSEYGRVILPFTVLRRLDCVLAPTKAAV 50


>gi|15676726|ref|NP_273871.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|7226064|gb|AAF41241.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|316984502|gb|EFV63470.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
 gi|325140020|gb|EGC62549.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis CU385]
          Length = 514

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 188/467 (40%), Gaps = 83/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHH 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 -----QFHIELGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFF 421


>gi|170025887|ref|YP_001722392.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|169752421|gb|ACA69939.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
          Length = 910

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 123/499 (24%), Positives = 216/499 (43%), Gaps = 80/499 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    TR  +  E   A    + 
Sbjct: 53  LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDA 112

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE     
Sbjct: 113 DTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTT 172

Query: 120 FSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSE 172
             + +++L E AG   K  K  S +     ++P        V+  IYE+L+ +F +   +
Sbjct: 173 LETGLSKLGESAG---KRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANAGK 229

Query: 173 GAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            A +F TP +V  L + ++   L   D +          +YDPT G+G  L   +N    
Sbjct: 230 KAGEFYTPHEVSVLMSNIIAHELKHKDTI---------KIYDPTSGSGSLL---INIGEA 277

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286
              + K    +  + QEL+  T+ +    +++R +++   +      + G TL +D    
Sbjct: 278 FEKYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEEDWPYF 332

Query: 287 --------FTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                   +        +SNPP+ + W+   KD D            RFG   PK +   
Sbjct: 333 DDSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDP--------RYSRFGLA-PK-TKAD 382

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H  +   L P+G    AIVL    LF G     E +IR+ L+E + I+ ++ LP 
Sbjct: 383 FAFLLH--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGQIRKQLIEQNHIDTVIGLPA 435

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T I T + IL  ++   +   V +++A+        EGK  ++   D +R I D 
Sbjct: 436 NIFFGTGIPTVILILKQKR---QNTDVLVVDAS---KHFMKEGKNNKLQASDIKR-ITDA 488

Query: 456 YVSREN-GKFSRMLDYRTF 473
            ++RE+  KFS+++  +T 
Sbjct: 489 VINRESIDKFSQLVSKQTL 507


>gi|121610070|ref|YP_997877.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121554710|gb|ABM58859.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 518

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 208/470 (44%), Gaps = 86/470 (18%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           ++K A+ L G+ + +D+  V L    L+ +  A E      R   L    +    +    
Sbjct: 17  LFKTADKLRGNMEPSDYKHVALGLIFLKYISDAFE-----ARHAQLLAEDAAAAEDKDEY 71

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTI-----AR-- 126
           +A   F+   E   S L +    N  +S I +  D+A +AI  D +    +     AR  
Sbjct: 72  LADNIFWVPREARWSHLQA----NAKQSSIGTLIDDAMRAIERDNESLKGVLPKDYARPA 127

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVV 184
           L K  +L ++    SGI L+      + V+  +YE+ + +F G+E   G E F TPR VV
Sbjct: 128 LNKV-MLGELIDLISGIALNEGNDKSKDVLGRVYEYFLGQFAGAEGKRGGE-FYTPRSVV 185

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                +L           P   R +YDP CG+GG    +   VA+ G   +I  I + +G
Sbjct: 186 RTLVEML----------EPYTGR-VYDPCCGSGGMFVQSEKFVAEHGG--RIGDIAI-YG 231

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--- 301
           QE    T  +    + +R ++SD + +      +GS   KD     +  + L+NPPF   
Sbjct: 232 QESNYTTWRLAKMNLAVRGIDSDIKWN-----NEGS-FHKDELRDLKADFILANPPFNIS 285

Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
              G +  +D              R+  G P   + +  +L H+ +   L P+G   A +
Sbjct: 286 DWGGGRLREDV-------------RWAFGAPPAGNANYAWLQHIFH--HLSPHG--FAGV 328

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS------- 411
           VL++  + + +  SGE +IR+ ++E ++++ +VALP  LF+ T I   LWILS       
Sbjct: 329 VLANGSMSSQQ--SGEGDIRKAMIEANVVDCMVALPGQLFYSTQIPACLWILSKDRSNGL 386

Query: 412 --NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               K  +RRG+V  I+A           +K  ++ D  RR++ +  + R
Sbjct: 387 VKKTKLRDRRGEVLFIDA-----------RKMGVLVDRTRRELTNEEIGR 425


>gi|254804703|ref|YP_003082924.1| putative type I restriction-modification system DNA methylase
           [Neisseria meningitidis alpha14]
 gi|254668245|emb|CBA05075.1| putative type I restriction-modification system DNA methylase
           [Neisseria meningitidis alpha14]
          Length = 514

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 200/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEIQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y +  + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L  G+ F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDGRPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +  GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SSRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKD---NTDIQFIDASSFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|167855556|ref|ZP_02478317.1| putative type I modification enzyme [Haemophilus parasuis 29755]
 gi|167853302|gb|EDS24555.1| putative type I modification enzyme [Haemophilus parasuis 29755]
          Length = 443

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 95  ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML----------EPYKGR-IYDPA 143

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       + +   H      +   GQE  P T  +    M IR +E D  +   
Sbjct: 144 MGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKG-- 198

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T S      K+  + ++NPPF  K W  +  A +         R+  G+P   
Sbjct: 199 ----NADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDP--------RWQYGIPPEG 246

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  R A++L++  + +    + E EIR+ +L+ DL+EA++A
Sbjct: 247 NANFAWLQHMI--YHLSPNG--RMALLLANGSMSSNT--NNEGEIRKNILKADLVEAMIA 300

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP+ LF  T I   +WIL+  K + R+G+V  I+A  L
Sbjct: 301 LPSQLFTNTQIPACIWILN--KNKARKGEVLFIDARQL 336


>gi|291167073|gb|EFE29119.1| type I restriction-modification system, M subunit [Filifactor
           alocis ATCC 35896]
          Length = 510

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 174/425 (40%), Gaps = 53/425 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW  A  LWG     ++ KVI+    LR +  A E      R + L   G   + +    
Sbjct: 15  IWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEK-----RYEELLKEGDGFENDRDAY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFDFSSTIAR------L 127
                F+   E   S + S      + + I    D  +AI  E+    + + +      L
Sbjct: 70  AEENIFFVPKEARWSKISSAAHTPEIGTVI---DDAMRAIEKENITLKNVLPKNYASPDL 126

Query: 128 EKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +K  +L ++   F+  +++        ++   YE+ I +F +       +F TP  +V  
Sbjct: 127 DKR-VLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKT 185

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             A+L           P     +YDP CG+GG    +   V    +H      +  +GQE
Sbjct: 186 IVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQ---AHSDNRGNISVYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW 305
              +T  +    M IR +      D +       T   D+    +  + ++NPPF    W
Sbjct: 233 SNADTWKMAKMNMAIRGI------DANFGSYHADTFFNDIHKTLKSDFIMANPPFNLSNW 286

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             DK          E  R+  G P   + +  ++ H+ + L       G+  +VL++  L
Sbjct: 287 GADKLK--------EDVRWKYGTPPSGNANYAWIQHMIHHLA----ANGKIGLVLANGAL 334

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++  K ++++GK   I
Sbjct: 335 --SSQSSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFIT--KNKKQKGKTLFI 390

Query: 426 NATDL 430
           +A  +
Sbjct: 391 DARKM 395


>gi|239629954|ref|ZP_04672985.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527566|gb|EEQ66567.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 532

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 162/355 (45%), Gaps = 46/355 (12%)

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +FED D  S        ++  ++  + K  S ++L      D ++ + YE+LI +F S+
Sbjct: 132 GLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQNTND-ILGDAYEYLIGQFASD 190

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  L T +      A+  +      T+YDPT G+G  L +A  +   
Sbjct: 191 SGKNAGEFYTPQSVSRLITQI------AMHGKEDVRGFTIYDPTMGSGSLLLNARRY--- 241

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LF 287
             S+ ++   +   GQEL   T+ +    M++  +  +     ++++    TL +D  + 
Sbjct: 242 --SNERLS--INYFGQELNTSTYNLARMNMILHGVPIN-----NQHLHNADTLDQDWPIE 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
               F   + NPP+   W+  K   E +       RF   GL   S     FL+H    L
Sbjct: 293 EPTNFDAVVMNPPYSAHWQPSK-GTEND------PRFVSYGLAPKSKADFAFLLHGYYHL 345

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G   IVL    LF G A   E  IR+ LLEN  I+ ++ LP ++FF T+I T 
Sbjct: 346 K----DTGVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVIGLPANIFFNTSIPTT 398

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + +L   +T      V  I+A+  +   +N+      + DD  ++IL+ Y++R++
Sbjct: 399 VTVLKKSRTTR---DVLFIDASKEFEKAKNQNH----LTDDNIQKILETYINRKD 446


>gi|307150615|ref|YP_003885999.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822]
 gi|306980843|gb|ADN12724.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7822]
          Length = 526

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 129/290 (44%), Gaps = 47/290 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TPR VV L   +L           P   R +YDP 
Sbjct: 161 ILGRVYEYFLGQFASAEGKKGGQFYTPRCVVELLVDML----------EPYKGR-VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V   G   KI  I + +GQE  P T  +C   + IR +      D +
Sbjct: 210 CGSGGMFVQSEKFVEAHGG--KIGDISI-YGQESNPTTWKLCKMNLAIRGI------DGN 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   +   DL    +  Y L+NPPF    W         +H   E  R+  G P + 
Sbjct: 261 LGAKNADSFRNDLHKELKADYILANPPFNVSDWGG-------QHLR-EDSRWIYGTPPVG 312

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++  +     L PNG   A  VL++  + + +  SGE EIR+ L+E DL++ +VA
Sbjct: 313 NANYAWIQQIIT--HLAPNG--IAGFVLANGSMSSNQ--SGEGEIRKALVEADLVDCMVA 366

Query: 393 LPTDLFFRTNIATYLWILSNRKTE------------ERRGKVQLINATDL 430
           LP  LF+ T I   LW L+  K +            +R+G+   I+A  L
Sbjct: 367 LPGQLFYNTQIPACLWFLTRNKGQSPLTLLNKGGMRQRKGETLFIDARKL 416


>gi|24215896|ref|NP_713377.1| type I restriction enzyme [Leptospira interrogans serovar Lai str.
           56601]
 gi|24197104|gb|AAN50395.1| type I restriction enzyme [Leptospira interrogans serovar Lai str.
           56601]
          Length = 513

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 200/479 (41%), Gaps = 70/479 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A+L   IW+ A D+ G     DF + +L     R         +E   S+++  Y     
Sbjct: 8   AALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ--YSKLND 65

Query: 65  SNIDLE---SFVKVAGYSFYNTSEYS-LSTLGSTNTRNN---------LESYIASF--SD 109
             I  E     +K  GY  Y +  ++ +      N R N         +ES    F    
Sbjct: 66  KKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSANGFPSEH 125

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLI 163
           + K +F DFD +S   RL     +K   L  + K  + ++    D+    +  + YE LI
Sbjct: 126 DIKGLFADFDTTSN--RLGNTVKDKNSRLTAVLKRVAELDFGDFDSSHIDLFGDAYEFLI 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   L      A+ K++   I  +YDP CG+G  L  A
Sbjct: 184 SNYAANAGKSGGEFFTPQHVSKLIARL------AIHKQT--RINKIYDPACGSGSLLLQA 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D    H I       GQE+   T+ +    M +  +  D       +I+ G+TL 
Sbjct: 236 KKQFDD----HIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIELGNTLI 284

Query: 284 KDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                 ++ F   +SNPP+   W+   D      +     RF P   L   S     F++
Sbjct: 285 DPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +  GRAAIV      +  R+G+ E +IR++L+ N+ +E +++L  +LFF 
Sbjct: 340 HALSYL----SSKGRAAIVCFPGIFY--RSGA-EQKIRQYLVGNNFVETVISLAPNLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T IA  + +LS  KT+      Q I+A+ L+    N      I+ +D   +I+  + S+
Sbjct: 393 TTIAVNILVLSKHKTDTN---TQFIDASGLFKKETN----NNILTEDHIERIMQTFDSK 444


>gi|119715342|ref|YP_922307.1| type I restriction-modification system, M subunit [Nocardioides sp.
           JS614]
 gi|119536003|gb|ABL80620.1| type I restriction-modification system, M subunit [Nocardioides sp.
           JS614]
          Length = 519

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 127/521 (24%), Positives = 217/521 (41%), Gaps = 74/521 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVRE-----KYLAFGGS 65
           IW+ A DL G     DF   +L     R     L   L     A        ++L+   +
Sbjct: 14  IWRIANDLRGSVDGWDFKAYVLGMLFYRFISENLTAYLNKQERAAGNPDFDYRHLSNADA 73

Query: 66  NIDLESFVKVAGYS------FYNTSEYSL--STLGSTNTR--NNLE--SYIASFSDNAKA 113
               E  VK  G+       F N  E +     L  T  R   N+E  S  A   ++ K 
Sbjct: 74  EFGREETVKEKGFYILPQDLFANVRERARHDENLNETLARVFRNIEASSIGADSEEDFKG 133

Query: 114 IFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F+D D       ST+A+  +   L K+      + L  +        + YE+L+  + +
Sbjct: 134 LFDDLDVNSSKLGSTVAKRNEK--LVKLLDAVGDLRLGHNGNTIDAFGDAYEYLMGMYAA 191

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                  ++ TP++V  L   +      A+  ++   +  +YDP CG+G  L        
Sbjct: 192 NAGRSGGEYYTPQEVSELLARI------AVVGKTE--VNKVYDPACGSGSLLL----KFD 239

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-F 287
               H  +       GQE+   T+ +C   M +  +  +       +I  G TL+    +
Sbjct: 240 KVLGHENVRQGYF--GQEINLTTYNLCRINMFLHDINYE-----KFDIAHGDTLTDPAHW 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANK 345
             + F   +SNPP+  KW  D D +          RF P   L   S   + F MH+ + 
Sbjct: 293 DDEPFEAIVSNPPYSTKWAGDADPLLINDP-----RFAPAGVLAPKSKADLAFTMHILSW 347

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L +     G AAIV     L+  R+G+ E +IR++L++N+ ++ ++ LP DLFF T IAT
Sbjct: 348 LAV----NGTAAIVEFPGVLY--RSGA-EQKIRKYLVDNNYVDTVIQLPPDLFFGTTIAT 400

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +L   K +    K   I+A+        +G K ++   +Q+R ILD + +RE+   F
Sbjct: 401 CIIVLKKSKAD---NKTLFIDAS---AEFIRQGNKNKMPAANQQR-ILDAFSAREDVAHF 453

Query: 465 SRMLDYRTF---GYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +++++       GY  + V   +   +I +   +  L A+I
Sbjct: 454 AKLIENAALEANGY-NLAVSSYVEAEYIREAVDIRELNAEI 493


>gi|289450588|ref|YP_003474820.1| putative type I restriction-modification system, M subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185135|gb|ADC91560.1| putative type I restriction-modification system, M subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 501

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 131/283 (46%), Gaps = 40/283 (14%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           +L  +   F+ +++  DT  +R V+   YE+ I +F  +  +G  +F TP  +V+   A+
Sbjct: 130 ILGNVVDLFTNMDMS-DTEGNRDVLGRTYEYCIAQFAEKEGKGGGEFYTPSSIVNTLVAI 188

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L           P     +YD  CG+GG    +   +    +H      +  +GQE  P+
Sbjct: 189 L----------KPYANCRVYDCCCGSGGMFVQSAKFIQ---AHSGNRGSISIYGQEANPD 235

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD- 308
           T  + +  + IR L++D             T + DL    +  + L+NPPF    W ++ 
Sbjct: 236 TWKMAIMNLTIRGLDAD------LGAYHADTFTNDLHPTLKADFILANPPFNYNPWGQED 289

Query: 309 -KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            KD V          R+  G+P  S+ +  ++ H+ +   L P+G  +  +VL++  L  
Sbjct: 290 LKDDV----------RWKYGVPPASNANYAWIQHMIH--HLAPSG--KIGLVLANGAL-- 333

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
                GE EIR+ ++E+DLIE I+A+P  LF+   I   LW +
Sbjct: 334 SSQNGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFI 376


>gi|51594888|ref|YP_069079.1| type I restriction-modification system, methyltransferase subunit
           (N-6 DNA methylase) [Yersinia pseudotuberculosis IP
           32953]
 gi|51588170|emb|CAH19777.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Yersinia pseudotuberculosis
           IP 32953]
          Length = 863

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 215/494 (43%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    TR  +  E   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE     
Sbjct: 66  DTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNF----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + +++L E AG   K   +       I ++ +   D V+  IYE+L+ +F +   + A
Sbjct: 126 LETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLLEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L + ++     A   +    I+ +YDPT G+G  L   +N       + 
Sbjct: 185 GEFYTPHEVSVLMSNII-----AYELKHKDTIK-IYDPTSGSGSLL---INIGEAFEKYA 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------- 286
           K    +  + QEL+  T+ +    +++R +++   +      + G TL  D         
Sbjct: 236 KNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEDDWPFFDDSDP 290

Query: 287 ---FTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +        +SNPP+ + W+   KD D            RFG   PK +     FL+
Sbjct: 291 QGSYYALHVDAVVSNPPYSQNWDPSFKDSDP--------RYSRFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G    AIVL    LF G     E +IR+ L+E + I+ I+ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGQIRKQLIEQNHIDTIIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I T + +L  ++   +   V +++A+        EGK  ++   D +R I D  + RE
Sbjct: 394 TGIPTVILVLKQKR---QNTDVLVVDAS---KHFMKEGKNNKLQASDIKR-ITDAVIKRE 446

Query: 461 N-GKFSRMLDYRTF 473
           +  KFS+++  +T 
Sbjct: 447 SIDKFSQLVSKQTL 460


>gi|257883803|ref|ZP_05663456.1| DNA-methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819641|gb|EEV46789.1| DNA-methyltransferase [Enterococcus faecium 1,231,501]
          Length = 538

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 210/502 (41%), Gaps = 98/502 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + + + +W  A  L G    +++   ILPF   R L        S  ++ YL   G  
Sbjct: 3   NTSEITSKLWAMANKLRGTMDASEYKNYILPFMFYRYL--------SENQDDYLKKNG-- 52

Query: 67  IDLESFVKVA--------------GYSFYNTSEYSLSTL-----GSTNTRNNLESYIASF 107
             LE + +V               G  +    EY+   L           ++ +    SF
Sbjct: 53  --LEEYYEVTDPEEKEDYLQEISRGIGYAIAPEYTWEQLVKKIENHQIKASDFQDLFDSF 110

Query: 108 SDNAK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           + NAK           +F D +   T  RL     E+A  L  I    +   +  D    
Sbjct: 111 NANAKRNPLAEDDFANVFSDINLGDT--RLGSNTNERAKALNDIVLMINDF-VFKDEAGH 167

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL---DPDDALFKESPGMIRTL 209
            ++ ++YE+LI +F +   +   +F TP +V  +   ++    + +D  F+        +
Sbjct: 168 DILGDVYEYLIGQFAANAGKKGGEFYTPHEVSQVLAKIVTSDANVEDNQFR--------V 219

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L      +        +      +GQEL   T+ +    +++  +     
Sbjct: 220 YDPTMGSGSLLLTVKKELPAGDKSGSVDF----YGQELNTTTYNLARMNLMMHGINYQ-- 273

Query: 270 RDLSKNIQQGSTLSKDL-FTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
              + N+++  TL  D  F  K       +F   ++NPP+  KW  D   V++E      
Sbjct: 274 ---NMNLRRADTLDADWPFAEKEGMQIPLKFDAVVANPPYSAKW--DIKDVDREKDT--- 325

Query: 322 GRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            RF G G+   S     F++H    L+      G  AIVL    LF G A   E +IR+ 
Sbjct: 326 -RFKGYGVAPASKADYAFVLHGLYHLD----KSGTMAIVLPHGVLFRGAA---EGKIRKN 377

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGK 439
           +++N+L++A++ +P +LF+ T+I T + +   R  E R+ K +  I+A+  +   +N+ K
Sbjct: 378 IIDNNLLDAVIGMPANLFYGTSIPTTVLVFKGR--EARKTKDILFIDASSEFVKGKNQNK 435

Query: 440 KRRIINDDQRRQILDIYVSREN 461
               ++DD   +I++ Y  RE+
Sbjct: 436 ----LSDDNINKIIETYEKRED 453


>gi|134294136|ref|YP_001117871.1| N-6 DNA methylase [Burkholderia vietnamiensis G4]
 gi|134137293|gb|ABO53036.1| N-6 DNA methylase [Burkholderia vietnamiensis G4]
          Length = 528

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 48/310 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F +   +    F TP  VV +   +L          +P   R +YDP 
Sbjct: 161 LLGEVYEYFLGQFATAEGKKGGQFYTPASVVRVLVEVL----------APHQGR-VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +    SH      +  +GQE  P T  +    + IR   +D    L 
Sbjct: 210 CGSGGMFVQSEKFIE---SHGGRADDISIYGQEANPTTWRLVAMNLAIRGFAAD----LG 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K  +   T  +D     R  Y L+NPPF    W  ++ A ++        R+  G P   
Sbjct: 263 K--EPADTFHRDQHPDLRADYVLANPPFNISDWGGERLADDR--------RWAHGTPPAG 312

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+ + L   P+G  +A +VL++  + + +  + E +IRR ++E D+I+ +VA
Sbjct: 313 NANYAWLQHILHHLS--PHG--QAGVVLANGSMTSNQ--NSEGDIRRAMVEADVIDVMVA 366

Query: 393 LPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINATDLWTSIRNEGKKRR 442
           LP  LF  T I   LW L+  K+           +RRG+V  I+A  L    R E +  R
Sbjct: 367 LPPQLFLNTQIPACLWFLTKDKSGAPIAGAKPGRDRRGEVLFIDARKLG---RMESRVVR 423

Query: 443 IINDDQRRQI 452
           + +++   +I
Sbjct: 424 VFDEEHISKI 433


>gi|47459119|ref|YP_015981.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
 gi|47458448|gb|AAT27770.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
          Length = 526

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 135/305 (44%), Gaps = 41/305 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+  + S   +   ++ TP++V  L   + L             I  +YDP CG+G
Sbjct: 191 VYEYLMSMYASNAGKSGGEYYTPQEVSELLAKITL--------VGKKEINKVYDPACGSG 242

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L   +N     G            GQE    T+ +C   M +  +  +       NI 
Sbjct: 243 SLL---LNFAKILGKEKVRNGFF---GQETNQTTYNLCRINMFLHDINYNKF-----NIS 291

Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           QG TL+  L    + F   +SNPP+  KW    + +          RF P   L   S  
Sbjct: 292 QGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPLLINDP-----RFSPAGVLAPESKA 346

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L +     G AAIV     ++ G A   E +IR++L++N+ I+AI+ LP
Sbjct: 347 DLAFIMHSLSYLAV----NGTAAIVTFPGVMYRGGA---EQKIRKYLVDNNFIDAIIQLP 399

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + +L   K  +    +  I+A+  +  I N  K    ++ +   +IL+
Sbjct: 400 ENLFFGTSIATCILVL---KKNKLVNDILFIDASKEFQKITNSNK----LSKENISKILN 452

Query: 455 IYVSR 459
            Y  R
Sbjct: 453 TYEKR 457


>gi|312880991|ref|ZP_07740791.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784282|gb|EFQ24680.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 548

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 169/387 (43%), Gaps = 78/387 (20%)

Query: 109 DNAKAIFEDFDFSS-----TIA-RLEKAGLLYKICKNFSGIELH------PDTVPDRVMS 156
           D+ K +F+D D +S     T+A R EK   L K+      + L        D   D +  
Sbjct: 153 DDFKGLFDDLDVNSGKLGPTVAKRNEK---LVKLLDAIGDLPLAGGGGGFADNTID-LFG 208

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDV----VHLATALLLDPDDALFKESPGMIRTLYDP 212
           + YE+L++ + S   +   +F TP++V     H+A A                +  +YDP
Sbjct: 209 DAYEYLMQMYASTAGKSGGEFYTPQEVSELLAHIAAA------------GKREVNKVYDP 256

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG---QELEPETHAVCVAGMLIRRLESDPR 269
            CG+G  L   +  +          P  V  G   QE+   T+ +C   M +  +  +  
Sbjct: 257 ACGSGSLLLQFLKVLG---------PDRVRQGFFGQEINLTTYNLCRINMFLHDVNYE-- 305

Query: 270 RDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
                +I  G TL+         F   +SNPP+  +WE D + +          RF P  
Sbjct: 306 ---KFHIAHGDTLTDPAHGDDEPFEAIVSNPPYSIRWEGDANPLLINDP-----RFAPAG 357

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S   + F MH+ + L +     G AAIV     L+ G A   E++IRR+L++N+ 
Sbjct: 358 VLAPKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRRYLIDNNY 410

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNEGKKRRI 443
           ++A++ LP DLFF T IAT + +L   K +         NAT   D        G K R 
Sbjct: 411 VDAVIQLPADLFFGTTIATCVIVLKKSKGD---------NATLFLDASGECVRSGNKNR- 460

Query: 444 INDDQRRQILDIYVSREN-GKFSRMLD 469
           ++ + R++IL  Y +R +   F+R++D
Sbjct: 461 LDPEHRQKILQAYRARRDVPHFARLVD 487


>gi|163737287|ref|ZP_02144705.1| Type I restriction-modification system methylation subunit
           [Phaeobacter gallaeciensis BS107]
 gi|161389891|gb|EDQ14242.1| Type I restriction-modification system methylation subunit
           [Phaeobacter gallaeciensis BS107]
          Length = 821

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 184/452 (40%), Gaps = 63/452 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   ++  A+ L G    ++F + I     L+R     E  R  V +K +A G +   
Sbjct: 6   AQLERHLFSAADILRGKMDASEFKEYIFGMLFLKRCSDVFEQARLEVVQKRIASGVAPEQ 65

Query: 69  LESFVKVAGY-----SFYNTSEYSLSTL---GSTNTRNNLESYIASF-SDNA--KAIFED 117
                +   +     +F+   +     L      N  + L   +    S+N   + + + 
Sbjct: 66  AAEEAENKVWYGRSGTFWVPPQSRFGHLVDEAHENIGDKLNKALGGVESENIALEGVLDH 125

Query: 118 FDFSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGA 174
            DF+  + + + +   L ++  +F  I L  +    PD ++   YE+LI  F     +  
Sbjct: 126 IDFTRKVGQSKISDQKLRQLINHFGEIRLRNEDFEFPD-LLGAAYEYLIGEFADSAGKKG 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV +   LL           P +   +YDP CG+GG L  A +++ + G   
Sbjct: 185 GEFYTPRSVVRMMVRLL----------KPTLEHDIYDPCCGSGGMLIAAKDYIDEHGQDG 234

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +   +    GQE      ++    ML+  + S    DL      G     +    +RF  
Sbjct: 235 RRANLF---GQENSGTVWSIAKMNMLLHGINS---ADLRNEDTLGEPQHVEDGELRRFDR 288

Query: 295 CLSNPPFGKKW-EKDKDAVEKEHKNGELG-------RFGPGLPKISD-GSMLFLMHLANK 345
            L+NPPF   W  KDKD      ++GE         RF   +P  S    ++FL H+   
Sbjct: 289 ILTNPPFSINWGSKDKD------RSGEYTWQPKFRERFFHEVPLGSKKADLMFLQHML-- 340

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                  GG  A V+    LF G     E +IR+ ++E+D +EA++ L   LF+ T I  
Sbjct: 341 --AVSRDGGMIATVMPHGVLFRG---GDEGKIRQKIIESDQVEAVIGLGPQLFYGTGIPA 395

Query: 406 YLWILSNR----------KTEERRGKVQLINA 427
            + +L  R          K  ER+GKV  INA
Sbjct: 396 CVIVLRQRVHHGANLVSGKPAERQGKVLFINA 427


>gi|224538865|ref|ZP_03679404.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519519|gb|EEF88624.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 528

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 187/449 (41%), Gaps = 56/449 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IWK A+ L G+   +++  V+L    L+ +    E    A     L   G   + +    
Sbjct: 36  IWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFETKYQA-----LIAEGDGFEEDKDEY 90

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE 128
            +   F+   E   S +  T     + + I    DNA  + E  +           AR E
Sbjct: 91  TSENIFFVPQEARWSMIAKTAHAPEIGTVI----DNAMRLIEKENTRLKGILPKNFARPE 146

Query: 129 -KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L  +   F+ I++        ++   YE+ + +F     + A +F TP  +V   
Sbjct: 147 LDKRRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKLAGEFYTPACIVRTL 206

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L           P   R +YDP CG+GG    +   +     H      +   GQ+ 
Sbjct: 207 VEVL----------QPYSGR-VYDPACGSGGMFVQSAKFIE---RHQGNINSISVFGQDS 252

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE 306
            P T  +    + IR +E+D    L K      T   D     +  Y L+NPPF    W 
Sbjct: 253 NPTTWKMAQMNLAIRGIEAD----LGKF--NADTFFDDQHPTLKADYILANPPFNLSDWG 306

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            DK         G++ R+  G+P   + +  +L H+ +   L P G  R  +VL++  L 
Sbjct: 307 VDK-------LQGDV-RWKFGIPPAGNANFAWLQHMIH--HLSPKG--RIGMVLANGSL- 353

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                 GE +IR  +++ DL+E IVALP+ LF+ T I   LW L+  +T+++ GK+  ++
Sbjct: 354 -SSQSGGEGKIRENIIKADLVEGIVALPSQLFYTTGIPVSLWFLN--RTKKQTGKILFVD 410

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           A ++ T +    +K R ++D +  +  DI
Sbjct: 411 ARNMGTMVT---RKLRELSDSEEGEKGDI 436


>gi|218767944|ref|YP_002342456.1| putative type I restriction-modification system protein [Neisseria
           meningitidis Z2491]
 gi|121051952|emb|CAM08258.1| putative type I restriction-modification system protein [Neisseria
           meningitidis Z2491]
          Length = 514

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 198/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEIQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|313896491|ref|ZP_07830042.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974915|gb|EFR40379.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 501

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 180/425 (42%), Gaps = 44/425 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNI 67
           + L +++W +A+ L G      + + I P    +RL +   E T  AV+E        + 
Sbjct: 8   SELESYLWGSADILRGKMDAGSYKQYIFPLLFFKRLNDVYEEETAKAVKENGEEAAEWD- 66

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           ++ S+    G+ + +      S +G         +   + S+    IF D  +++   RL
Sbjct: 67  EIHSYRIPDGFHWDDVRNVP-SDVGKA-IVTAFRAMEKANSEKLTGIFGDGTWTNK-NRL 123

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
               LL  + ++FS   L  +  P+  +   YE+LI++F  +    A++F T R VVHL 
Sbjct: 124 PDR-LLKDLMEHFSKYTLSLENCPEDELGQGYEYLIKQFADDSGHTAQEFYTNRTVVHLM 182

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           T +L           P    ++YDPTCG+ G L  A+ H+   G   +   +    GQE+
Sbjct: 183 TEIL----------QPKSGESIYDPTCGSAGMLISAIAHLKRSGKEWRNVSLF---GQEI 229

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG- 302
              + A+    + +  +E          I  G TL+   FT     ++F   ++NPP+  
Sbjct: 230 NLLSSAIGRMNLFLHGIE-------DFEIVNGDTLANPAFTKNGKLRQFDMIVANPPYSV 282

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            +W +     +K       GR   G+P  +     F  H+   ++   +  GR AI+   
Sbjct: 283 NQWSRAAFEFDK------YGRNILGVPPQARADYAFFQHILVSMK---DKTGRCAILFPH 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E  +R  L+ +D ++ ++ L  +LF+ + +   + I    K +  +  V
Sbjct: 334 GVLFRNE----ERAMREKLVHSDWVDCVIGLGANLFYNSPMEACIVICRTEKPDTHKNHV 389

Query: 423 QLINA 427
             INA
Sbjct: 390 LFINA 394


>gi|259507945|ref|ZP_05750845.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
 gi|259164440|gb|EEW48994.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
          Length = 523

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 197/475 (41%), Gaps = 71/475 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A    R+ + ++ +A G ++    
Sbjct: 4   LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTDDQTA 63

Query: 71  SFV----KVAGYSFYNTS-----EY-SLSTLGSTNTRNNLESYIASFSDNA--KAIFEDF 118
             +    +  G+  +        EY + +  G +    N    I    D+A    +  + 
Sbjct: 64  MLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIMVANP 123

Query: 119 DFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
             S+T+ R+         + G L  +          P    D ++  +YE+ + +F    
Sbjct: 124 ALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARD-LLGEVYEYFLEKFARAE 182

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +                P   R +YDP CG+GG        +   
Sbjct: 183 GKRGGEFYTPAGVVRVLVE----------VLEPTSGR-VYDPCCGSGGMFVQTEKFL--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFT 288
            +H+K    +  +GQEL   T  +    + I  L ++  PR         G T ++DL  
Sbjct: 229 DAHNKDRTAIAVYGQELNERTWRMAKMNLAIHGLNANLGPR--------WGDTFARDLHP 280

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +  Y ++NPPF  K W +          N E  R+  G+P  ++ +  ++ H+ +KL 
Sbjct: 281 EMQADYIMANPPFNIKDWAR----------NEEDPRWRYGVPPKNNANYAWIQHIISKLA 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A +V+++  + +   G G+  IR  L+E DL+  +VALPT LF  T I   +
Sbjct: 331 P----GGSAGVVMANGSMSSNSGGEGK--IRAELVEADLVSCMVALPTQLFRSTGIPVCV 384

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           W  +  KT       +R G+V  I+A +L   I    +  R ++D+   +I D +
Sbjct: 385 WFFAKDKTVGDQGAIDRTGQVLFIDARNLGHMID---RAERALSDEDIAKIADTF 436


>gi|240949256|ref|ZP_04753600.1| Type I restriction-modification system methyltransferase subunit
           [Actinobacillus minor NM305]
 gi|240296372|gb|EER47016.1| Type I restriction-modification system methyltransferase subunit
           [Actinobacillus minor NM305]
          Length = 561

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 213 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML----------EPYKGR-IYDPA 261

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       + +   H      +   GQE  P T  +    M IR +E D  +   
Sbjct: 262 MGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKG-- 316

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T S      K+  + ++NPPF  K W     A +         R+  G+P  S
Sbjct: 317 ----NADTFSNPQHRDKKMDFVMANPPFNMKDWWHPSLAQDL--------RWQYGIPPES 364

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  R A++L++  + +    + E EIR+ +L+ DL+EA++A
Sbjct: 365 NANFAWLQHMI--YHLSPNG--RMALLLANGSMSSNT--NNEGEIRKNILKADLVEAMIA 418

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP+ LF  T I   +WIL+  K + R+G+V  I+A  L
Sbjct: 419 LPSQLFTNTQIPACIWILN--KDKARKGEVLFIDARQL 454


>gi|319410193|emb|CBY90529.1| putative type I restriction-modification system M protein
           [Neisseria meningitidis WUE 2594]
          Length = 514

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 199/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L  TL  R         S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHH 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|25028883|ref|NP_738937.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|23494170|dbj|BAC19137.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
          Length = 536

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 197/475 (41%), Gaps = 71/475 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A    R+ + ++ +A G ++    
Sbjct: 17  LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTDDQTA 76

Query: 71  SFV----KVAGYSFYNTS-----EY-SLSTLGSTNTRNNLESYIASFSDNA--KAIFEDF 118
             +    +  G+  +        EY + +  G +    N    I    D+A    +  + 
Sbjct: 77  MLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIMVANP 136

Query: 119 DFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
             S+T+ R+         + G L  +          P    D ++  +YE+ + +F    
Sbjct: 137 ALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARD-LLGEVYEYFLEKFARAE 195

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +                P   R +YDP CG+GG        +   
Sbjct: 196 GKRGGEFYTPAGVVRVLVE----------VLEPTSGR-VYDPCCGSGGMFVQTEKFL--- 241

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFT 288
            +H+K    +  +GQEL   T  +    + I  L ++  PR         G T ++DL  
Sbjct: 242 DAHNKDRTAIAVYGQELNERTWRMAKMNLAIHGLNANLGPR--------WGDTFARDLHP 293

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +  Y ++NPPF  K W +          N E  R+  G+P  ++ +  ++ H+ +KL 
Sbjct: 294 EMQADYIMANPPFNIKDWAR----------NEEDPRWRYGVPPKNNANYAWIQHIISKLA 343

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A +V+++  + +   G G+  IR  L+E DL+  +VALPT LF  T I   +
Sbjct: 344 P----GGSAGVVMANGSMSSNSGGEGK--IRAELVEADLVSCMVALPTQLFRSTGIPVCV 397

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           W  +  KT       +R G+V  I+A +L   I    +  R ++D+   +I D +
Sbjct: 398 WFFAKDKTVGDQGAIDRTGQVLFIDARNLGHMI---DRAERALSDEDIAKIADTF 449


>gi|325108024|ref|YP_004269092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
 gi|324968292|gb|ADY59070.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
          Length = 524

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 43/321 (13%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  R+E   +L  + KNFS IE+  D   D+    IYE+ +  F     +   +F TP  
Sbjct: 120 TFNRIENT-ILVSLLKNFSQIEM--DDEGDK-FGKIYEYFLGNFARAEGQKGGEFFTPTS 175

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++           P   R ++DP+CG+GG    + + +    +H+K P   + 
Sbjct: 176 LVKLIVEII----------EPYHGR-IFDPSCGSGGMFAQSADFIK---AHNKKPADEIS 221

Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPP 300
            +GQE   ET  +C+  M +  L  D        I+ G++  +D+   + RF + ++NPP
Sbjct: 222 CYGQERVAETRQLCMMNMAVHALSGD--------IRLGNSYYEDMHESQGRFDFVMANPP 273

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F      + D V+K+    +  RF  G+P+  + + L++    + L    N  GRA  V+
Sbjct: 274 F------NVDKVDKDRLKDD-PRFPFGMPRNDNANYLWIELFYSAL----NETGRAGFVM 322

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERR 419
           ++S      A   E EIR+ LL +  ++ +VA+  + F+   +   LW     ++  +R+
Sbjct: 323 ANSA---ADARQSEQEIRKKLLRSHAVDVMVAIGPNFFYTVTLPCTLWFFDKGKQNTDRK 379

Query: 420 GKVQLINATDLWTSIRNEGKK 440
            KV  I+A   +  +    +K
Sbjct: 380 DKVLFIDARHTFRQVDRAHRK 400


>gi|15609893|ref|NP_217272.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Rv]
 gi|148662598|ref|YP_001284121.1| putative type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|148823944|ref|YP_001288698.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis F11]
 gi|167968583|ref|ZP_02550860.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|218754497|ref|ZP_03533293.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|253798162|ref|YP_003031163.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 1435]
 gi|254551815|ref|ZP_05142262.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553459|ref|ZP_06442669.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 605]
 gi|289762928|ref|ZP_06522306.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|297635365|ref|ZP_06953145.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 4207]
 gi|297732363|ref|ZP_06961481.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN R506]
 gi|306777037|ref|ZP_07415374.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu001]
 gi|306780940|ref|ZP_07419277.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu002]
 gi|306785567|ref|ZP_07423889.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu003]
 gi|306790162|ref|ZP_07428484.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu004]
 gi|306794246|ref|ZP_07432548.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu005]
 gi|306798664|ref|ZP_07436966.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu006]
 gi|306804519|ref|ZP_07441187.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu008]
 gi|306807440|ref|ZP_07444108.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu007]
 gi|306973152|ref|ZP_07485813.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu010]
 gi|307080861|ref|ZP_07490031.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu011]
 gi|307085452|ref|ZP_07494565.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu012]
 gi|313659695|ref|ZP_07816575.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN V2475]
 gi|2624278|emb|CAA15552.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM
           (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148506750|gb|ABQ74559.1| putative type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|148722471|gb|ABR07096.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis F11]
 gi|253319665|gb|ACT24268.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438091|gb|EFD20584.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 605]
 gi|289710434|gb|EFD74450.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|308214548|gb|EFO73947.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu001]
 gi|308326196|gb|EFP15047.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu002]
 gi|308329750|gb|EFP18601.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu003]
 gi|308333357|gb|EFP22208.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu004]
 gi|308337381|gb|EFP26232.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu005]
 gi|308341044|gb|EFP29895.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu006]
 gi|308346170|gb|EFP35021.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu007]
 gi|308348850|gb|EFP37701.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu008]
 gi|308357414|gb|EFP46265.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu010]
 gi|308361366|gb|EFP50217.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu011]
 gi|308364976|gb|EFP53827.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu012]
 gi|328457935|gb|AEB03358.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 4207]
          Length = 540

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 179/447 (40%), Gaps = 63/447 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G     +E
Sbjct: 18  LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEESQIE 77

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
             +    +  GY  +     +     + NT+           +  + I E  D       
Sbjct: 78  DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP 137

Query: 120 -FSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
               T+ RL         + G L  +  N +      +     +M  +YE+ +  F    
Sbjct: 138 TLGGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGEHRARDLMGEVYEYFLGNFARAE 196

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +   +L        + S G +   YDP CG+GG        + + 
Sbjct: 197 GKRGGEFFTPPSVVKVIVEVL--------EPSSGRV---YDPCCGSGGMFVQTEKFIYE- 244

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H   P  +  +GQE   ET  +    + I  +++          +   T ++D     
Sbjct: 245 --HDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNK-----GLGARWSDTFARDQHPDV 297

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  Y ++N PF  K W           +N E  R+  G+P  ++ +  ++ H+  KL   
Sbjct: 298 QMDYVMANLPFNIKDW----------ARNEEDPRWRFGVPPANNANYAWIQHILYKLAP- 346

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRA +V+++  + +    +GE +IR  ++E DL+  +VALPT LF  T I   LW 
Sbjct: 347 ---GGRAGVVMANGSMSSN--SNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCLWF 401

Query: 410 LSNRKTE------ERRGKVQLINATDL 430
            +  K        +R G+V  I+A +L
Sbjct: 402 FAKDKAAGKQGSIDRCGQVLFIDAREL 428


>gi|83815070|ref|YP_445227.1| putative type i restriction enzyme hindviip m protein [Salinibacter
           ruber DSM 13855]
 gi|83756464|gb|ABC44577.1| putative type i restriction enzyme hindviip m protein [Salinibacter
           ruber DSM 13855]
          Length = 522

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 137/306 (44%), Gaps = 53/306 (17%)

Query: 154 VMSNIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+  +YE+ I  F  +E S+G E F TPR VV  A   +L+P+D            ++DP
Sbjct: 168 VLGRVYEYFITNFADTEGSKGGE-FFTPRSVVQ-ALVAMLEPEDG---------SKIFDP 216

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    A     D  S       L  +GQE   +   +C   +L+         DL
Sbjct: 217 ACGSGGMFVQAAEFTDDKES-------LSFYGQESVDQNLRLCKMNLLMH--------DL 261

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG---- 327
             +++ G +L  D   G +  Y ++NPPF  + W  D+         G+  R   G    
Sbjct: 262 QGDLESGDSLLNDKHEGLKADYVIANPPFNIRSWGADE-------IPGDDPRLQVGDRRL 314

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P  S+ + +++MH  + LE     GG A  V+++  +    + + E  +R+ L++   +
Sbjct: 315 QPTDSNANYMWMMHFLHHLE----DGGTAGYVMANGSMTT--SLTNEEPVRKALVDERFV 368

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRK-----TEERRGKVQLINATDLWTSIRNEGKKRR 442
           + IV LP  LFF T I   LW LS  +       ER  ++  ++  D+        + +R
Sbjct: 369 DCIVQLPDKLFFGTGIPACLWFLSRNRDGSNGERERSDEILFLDGRDMGELPE---RAKR 425

Query: 443 IINDDQ 448
           ++ DD+
Sbjct: 426 VLTDDE 431


>gi|254672640|emb|CBA06429.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha275]
          Length = 514

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 199/496 (40%), Gaps = 89/496 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L  TL  R         S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLG-TLFYRF-------ISENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIE-LH 146
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E  H
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDYH 172

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D   D      YE+LI  + +   +   +F TP+ V  L   L +   + + K      
Sbjct: 173 IDLFGDA-----YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------ 221

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  
Sbjct: 222 --IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNY 273

Query: 267 DPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +       +I+ G TL+   L   K F   +SNPP+   W    D            RF 
Sbjct: 274 NKF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFA 323

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E
Sbjct: 324 PAGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVE 376

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      +
Sbjct: 377 GNYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNV 429

Query: 444 INDDQRRQILDIYVSR 459
           + ++   +I+ ++  +
Sbjct: 430 LTEEHIAEIVKLFADK 445


>gi|308189189|ref|YP_003933320.1| Type I restriction-modification system methyltransferase subunit
           [Pantoea vagans C9-1]
 gi|308059699|gb|ADO11871.1| Type I restriction-modification system methyltransferase subunit
           [Pantoea vagans C9-1]
          Length = 863

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 217/494 (43%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYL-AFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    T+  +  K + A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPKDIKALNEEDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +V+      +A  + ++T     S    +N R+ L ++    S N K +FE     
Sbjct: 66  DTVKYVQDNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPNYKKLFEGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNF----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + +++L E AG   K   +       I ++ +   D V+  IYE+LI +F +   + A
Sbjct: 126 LETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQGYD-VLGYIYEYLIEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L + ++    +   KE+      +YDPT G+G  L +    V     + 
Sbjct: 185 GEFYTPHEVSVLMSHII--AHELKHKETI----KIYDPTSGSGSLLINIGEAVE---KYA 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------- 286
           K    +    QEL+  T+ +    +++R +++   +      + G TL  D         
Sbjct: 236 KSKDSITYFAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEDDWPYFDDSDP 290

Query: 287 ---FTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +        +SNPP+ + W+   KD D            RFG   PK +     FL+
Sbjct: 291 QGSYYTLHVDAVVSNPPYSQNWDPSFKDSDP--------RYSRFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G    AIVL    LF G     E +IR+ L+E + I+ ++ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGQIRKQLIEQNHIDTVIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +L  ++   +   V +++A+        EGK  ++   D +R I D  ++RE
Sbjct: 394 TSIPTVILVLKQKR---QNTDVLVVDAS---RHFMKEGKSNKLQASDIKR-ITDAVINRE 446

Query: 461 N-GKFSRMLDYRTF 473
           +  KFS+++  +T 
Sbjct: 447 SIDKFSQLVSKQTL 460


>gi|308063356|gb|ADO05243.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Sat464]
          Length = 529

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 200/483 (41%), Gaps = 77/483 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYLAFGGSNID- 68
           L N IWK A +L G     DF + +L     R + E          R++  +F  + +  
Sbjct: 19  LHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERKRDPSFDYAKLSD 78

Query: 69  ------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SD 109
                  E  +K  G+ F   S    + L +  T  +L   + +               +
Sbjct: 79  EEAEGAKEGLIKEKGF-FIPPSALFCNVLKNARTNEDLNVTLQNIFNEIEKSSLGFESEE 137

Query: 110 NAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           N K +F D D       SS   R+EK   L KI +    ++L  +  +  D V  + YE+
Sbjct: 138 NVKGLFADLDVNSNKLGSSHKNRVEK---LAKILQAIGDMQLGDYQKSGID-VFGDAYEY 193

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L 
Sbjct: 194 LMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLL 245

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
                + D              GQE+   T+ +C   M +  +      + SK +I  G 
Sbjct: 246 QFSKVLGDKNVSKGY------FGQEINLTTYNLCRINMFLHDI------NYSKFHIAHGD 293

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL          F   +SNPP+  KW  + + +    +     RF P   L   +   + 
Sbjct: 294 TLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPILINDE-----RFSPAGVLAPKNAADLA 348

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ + I+ ++ALP +L
Sbjct: 349 FTMHMLSYL----SNSGTCAIVEFPGVLYRGNA---EAKIREHLVKENFIDCVIALPDNL 401

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IAT + +L   K ++       I+A+  +     EGKK + + +  R +IL  Y 
Sbjct: 402 FFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK---EGKKNK-LKEHNREKILQTYT 454

Query: 458 SRE 460
            R+
Sbjct: 455 ERK 457


>gi|329114039|ref|ZP_08242803.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
 gi|326696578|gb|EGE48255.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
          Length = 537

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+  +YE+ +  F G+E   G E F TP  VV    ++L           P   R +YDP
Sbjct: 177 VLGRVYEYFLGGFAGAEGKRGGE-FYTPSSVVRTLVSML----------EPYKGR-VYDP 224

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    +   V   G   K+  I + +GQE    T  +    + +R + +D R + 
Sbjct: 225 CCGSGGMFVQSERFVETHGG--KLGDIAI-YGQESNHTTWRLARMNLAVRGIGADIRWN- 280

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPK 330
                +GS L +D     RF Y L+NPPF     W    +         E  R+  G P 
Sbjct: 281 ----NEGSFL-RDELKDLRFDYILANPPFNVSDWWNASLE---------EDPRWQYGKPP 326

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  +L H+     L P+G   A +VL++  + + +  + E EIRR ++E D+++ +
Sbjct: 327 AGNANYAWLQHIL--WHLAPDG--TAGVVLANGSMSSNQ--NSEGEIRRRMVEADVVDCM 380

Query: 391 VALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  LF+ T I   LW L+  K +    +RRG++  I+A  L   +    + RR + D
Sbjct: 381 VALPGQLFYSTQIPACLWFLTRTKKQKGWRDRRGEILFIDARKLGKLV---DRTRRELTD 437

Query: 447 DQRRQILDIY 456
           +   +I D Y
Sbjct: 438 EDVARIADTY 447


>gi|261492504|ref|ZP_05989058.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496910|ref|ZP_05993278.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307434|gb|EEY08769.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311867|gb|EEY13016.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 552

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 128/278 (46%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L        K   G I   YDP 
Sbjct: 205 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML--------KPYSGRI---YDPA 253

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF   A   +    +H      +  +GQE  P T  + V  M IR +  D      
Sbjct: 254 MGSGGFFVQADRFIQ---AHQGNRNAISVYGQESNPNTRKLAVMNMAIRGIPFD------ 304

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   TL   L   K+    ++NPPF +K W  +  A +         R+  G P   
Sbjct: 305 FGDKPEDTLLNPLHIDKKMDVVMANPPFNQKAWWSESLANDP--------RWAYGTPPQG 356

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L P G  + A++L++  +      SGE +IR+ +++ DL+EA++A
Sbjct: 357 NANFAWLQHMI--YHLSPKG--KMALLLANGSM--SSQTSGEGDIRKNIVQADLVEAMIA 410

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +WI++  K + R+ +V  INAT +
Sbjct: 411 LPNQLFTNTQIPACIWIIN--KAKARKKEVLFINATQI 446


>gi|153948702|ref|YP_001402490.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960197|gb|ABS47658.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 863

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 215/494 (43%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    TR  +  E   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE     
Sbjct: 66  DTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNF----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + +++L E AG   K   +       I ++ +   D V+  IYE+L+ +F +   + A
Sbjct: 126 LETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLLEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L + ++     A   +    I+ +YDPT G+G  L   +N       + 
Sbjct: 185 GEFYTPHEVSVLMSNII-----AYELKHKDTIK-IYDPTSGSGSLL---INIGEAFEKYA 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------- 286
           K    +  + QEL+  T+ +    +++R +++   +      + G TL  D         
Sbjct: 236 KNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEDDWPFFDDSDP 290

Query: 287 ---FTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +        +SNPP+ + W+   KD D            RFG   PK +     FL+
Sbjct: 291 QGSYYALHVDAVVSNPPYSQNWDPSFKDSDP--------RYSRFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G    AIVL    LF G     E +IR+ L+E + I+ I+ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGQIRKQLIEQNHIDTIIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I T + +L  ++   +   V +I+A+        EGK  ++   D +R I D  ++RE
Sbjct: 394 TGIPTVILVLKQKR---QNTDVLVIDAS---KHFMKEGKNNKLQASDIKR-ITDAVINRE 446

Query: 461 N-GKFSRMLDYRTF 473
           +  KFS+ +  +T 
Sbjct: 447 SIDKFSQRVSKQTL 460


>gi|91775530|ref|YP_545286.1| XRE family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91709517|gb|ABE49445.1| transcriptional regulator, XRE family [Methylobacillus flagellatus
           KT]
          Length = 519

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 44/322 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D  PD  +   YE+L+R+F     + A +F TP +V  L   +L        +  PG   
Sbjct: 161 DVQPD-FLGRAYEYLLRKFAEGSGQSAGEFFTPTEVGFLMAHIL--------RPKPG--E 209

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T +D  CG+ G L        +     ++P  L   GQEL+ E++AV     +I      
Sbjct: 210 TCHDYACGSAGLLIKLQLVARELDPTSRVP--LKLSGQELQAESYAVAQMNAIIH----- 262

Query: 268 PRRDLSKNIQQGSTLSKDLF---TGK-RFH-YCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              D+   + +G T+    F   +GK R H   ++NP + + +  D  A      N    
Sbjct: 263 ---DMEVELARGDTMINPKFREASGKIRGHDIVVANPMWNQPFAADLFA------NDPFD 313

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IR 378
           RF   G      G   +L H    +    N  GRAA+VL +  +  G     E +   IR
Sbjct: 314 RFRTAGGITSGKGDWAWLQHTLACM----NDHGRAAVVLDTGAVTRGSGSKNEDKERTIR 369

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           +W +E DLI+ ++ LP +LF+ T  A  + +LS RK   R+GK+ L+NA+  +     +G
Sbjct: 370 KWFVEQDLIDGVILLPENLFYNTTAAGVIVVLSRRKPAARKGKIVLLNASRRF----KKG 425

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
           + +  + ++  R +  +Y+  E
Sbjct: 426 RPKNYLPEEDIRPLAAMYLKGE 447


>gi|91785554|ref|YP_560760.1| Type I restriction-modification system, M subunit [Burkholderia
           xenovorans LB400]
 gi|91689508|gb|ABE32708.1| Type I restriction-modification system, M subunit [Burkholderia
           xenovorans LB400]
          Length = 519

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 36/282 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +    F TP  +V    A+L          +P   + +YDP 
Sbjct: 164 VLGQVYEYFLGQFASAEGKKGGQFYTPASIVKTLVAVL----------APHHGK-VYDPC 212

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR ++ +  R   
Sbjct: 213 CGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQESNPTTWRLAAMNLAIRGIDYNLGR--- 266

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKIS 332
              +   T  ++     R  + L+NPPF        +  +  H + E   R+  G P   
Sbjct: 267 ---EPADTFVRNQHPDLRADFVLANPPF--------NVSDWWHGSLEGDPRWVYGTPPQG 315

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  RA IVL++  + + +  + E +IRR +++ D++E +VA
Sbjct: 316 NANYAWLQHML--YHLKPNG--RAGIVLANGSMSSSQ--NSEGDIRRAMVDADVVEVMVA 369

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           LP  LFF T I   LW L+ +KT  R+G+V  I+A  L + I
Sbjct: 370 LPGQLFFNTQIPACLWFLAKQKT-TRKGEVLFIDARKLGSMI 410


>gi|328471218|gb|EGF42120.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 10329]
          Length = 544

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 159/362 (43%), Gaps = 53/362 (14%)

Query: 112 KAIFEDFDFSSTIARLEKAG----LLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRR 165
           + +F + DF+S  A L K       L  +  +F+   +++ P  V + V+ N Y +LI R
Sbjct: 141 EGVFRNIDFNSE-ANLGKTKDRNRRLKTLLDDFNKPALDMSPSRVSEDVIGNTYIYLIER 199

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           FGS+  + A +F TP  V  L   L           +P     + DP CG+ G L +A  
Sbjct: 200 FGSDAGKKAGEFYTPHKVSELVARL----------SAPKSGARICDPACGSAGLLIEAAR 249

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSK 284
            V D   ++ +      +G E+   T A+    M +    SD  R +    +   + +  
Sbjct: 250 QVGD--RNYSL------YGMEVNGSTWALARMNMFLHG--SDFARIEWCNTLTSPALVEN 299

Query: 285 DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           D     +F   ++NPPF   KW  D D  E  +      R+  GLP  S     F+ H+ 
Sbjct: 300 DRLM--KFDNVVANPPFSLDKWGAD-DVTEDRY-----NRYWRGLPPKSKADFAFISHM- 350

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             +E      GR A+V+    LF G A   E  IR+ L+E +L++A++ LP +LF  T I
Sbjct: 351 --VEAAVEKEGRIAVVVPHGVLFRGAA---EGRIRQKLIEENLLDAVIGLPGNLFPSTGI 405

Query: 404 ATYLWILSNRK----TEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYV 457
              + I    +      E R  V  ++A+  D + +    GK + I+ D+   +I+    
Sbjct: 406 PVAILIFDRSREKGGANENRKDVLFVDASGKDHYQA----GKNQNILLDEHLDKIVAAVT 461

Query: 458 SR 459
           +R
Sbjct: 462 AR 463


>gi|309379401|emb|CBX21968.1| putative DNA adenine methyltransferase subunit of Type I
           restriction/modification system [Neisseria lactamica
           Y92-1009]
          Length = 513

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 197/495 (39%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEIQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+       R F   +SNPP+   W    D            RF P
Sbjct: 274 KF-----HIELGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 377 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 429

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 430 TEEHIAEIVKLFADK 444


>gi|308378090|ref|ZP_07668665.1| putative type I restriction-modification system, M subunit
           [Mycobacterium tuberculosis SUMu009]
 gi|308353571|gb|EFP42422.1| putative type I restriction-modification system, M subunit
           [Mycobacterium tuberculosis SUMu009]
          Length = 718

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 179/447 (40%), Gaps = 63/447 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G     +E
Sbjct: 196 LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEESQIE 255

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
             +    +  GY  +     +     + NT+           +  + I E  D       
Sbjct: 256 DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP 315

Query: 120 -FSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
               T+ RL         + G L  +  N +      +     +M  +YE+ +  F    
Sbjct: 316 TLGGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGEHRARDLMGEVYEYFLGNFARAE 374

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  VV +   +L        + S G +   YDP CG+GG        + + 
Sbjct: 375 GKRGGEFFTPPSVVKVIVEVL--------EPSSGRV---YDPCCGSGGMFVQTEKFIYE- 422

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H   P  +  +GQE   ET  +    + I  +++          +   T ++D     
Sbjct: 423 --HDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNK-----GLGARWSDTFARDQHPDV 475

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  Y ++N PF  K W +          N E  R+  G+P  ++ +  ++ H+  KL   
Sbjct: 476 QMDYVMANLPFNIKDWAR----------NEEDPRWRFGVPPANNANYAWIQHILYKLA-- 523

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRA +V+++  + +    +GE +IR  ++E DL+  +VALPT LF  T I   LW 
Sbjct: 524 --PGGRAGVVMANGSMSSN--SNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCLWF 579

Query: 410 LSNRKTE------ERRGKVQLINATDL 430
            +  K        +R G+V  I+A +L
Sbjct: 580 FAKDKAAGKQGSIDRCGQVLFIDAREL 606


>gi|327401776|ref|YP_004342615.1| adenine-specific DNA-methyltransferase [Archaeoglobus veneficus
           SNP6]
 gi|327317284|gb|AEA47900.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Archaeoglobus veneficus SNP6]
          Length = 509

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 162/359 (45%), Gaps = 42/359 (11%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  +   + + +  DF       +   +L ++ + FSG+ L      D ++ + YE ++
Sbjct: 112 LAEKNPELQGVVDRLDFLEFTRHRDNFDILVQLFELFSGLNL--GRTSDSILGDAYEWIV 169

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             F  + ++  E F TP +VV L   ++          +P  + ++YDP  G    L  A
Sbjct: 170 GYFAPQKAKEGEVF-TPSEVVELIVKIV----------APKPLESVYDPAAGYARMLIRA 218

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            ++V +     +   + + +GQE+ P T+A+     ++  +     +D+  N+  G TL 
Sbjct: 219 YDYVKEKYGEEEAKKLFL-YGQEVNPTTYAIAKMNAIVHGI-----KDI--NLVVGDTLK 270

Query: 284 ----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKISDGSML 337
               KD  + +RF   ++NPP    W +D    E E K  E    RF  G P  +     
Sbjct: 271 NPRFKDGESFRRFDVVIANPP----WNQDGYG-EVELKKAEFYEERFKYGYPPNNSADWA 325

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+        +      +V+ +  LF G     E  IR+ +L +DL+E ++ LP  L
Sbjct: 326 WIQHML------ASAKRCVGVVIDNGCLFRG---GKEKTIRKAILMDDLLECVILLPEKL 376

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F+ T     + I + +K EER+ KV  INA++ +     E +K   + D+   +I++ Y
Sbjct: 377 FYNTGAPGAILIFNKQKPEERKSKVLFINASNEYEK-HPEVRKLNRLGDEHIEKIVNAY 434


>gi|269115295|ref|YP_003303058.1| Type I restriction enzyme M protein [Mycoplasma hominis]
 gi|268322920|emb|CAX37655.1| Type I restriction enzyme M protein [Mycoplasma hominis ATCC 23114]
          Length = 520

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 47/326 (14%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T +      A+F +    +  +YDP CG+G 
Sbjct: 184 YEYLMSMYASNAGKSGGEYFTPQEVSELLTKI------AVFNKKK--VNRVYDPACGSGS 235

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L   +  +               +GQE+   T+ +C   M +  +  D       NI  
Sbjct: 236 LLLQTIKVLGKENIKDGF------YGQEVNLTTYNLCRINMFLHDIGFDKF-----NIYN 284

Query: 279 GSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           G TL   S +    + F   +SNPP+  KWE + + +    +     RF P   L   S 
Sbjct: 285 GDTLLSPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPLLINDQ-----RFSPAGILAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L       G AAIV     ++ G A   E +IR++L+EN+ I+AI+ L
Sbjct: 340 ADFAFILHSLSWLATD----GVAAIVCFPGIMYRGGA---EQKIRQYLVENNFIDAIIQL 392

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+I+T + +L   K +     +  I+A+  +  + N  K    +       I+
Sbjct: 393 PSNLFFGTSISTCIMVLKKSKID---NNILFIDASQEFLKVTNNNK----LTSQNINNII 445

Query: 454 DIYVSREN----GKFSRMLDYRTFGY 475
           D Y  R++     K + + D ++  Y
Sbjct: 446 DYYGQRKDISYISKLASVEDIKSNSY 471


>gi|258513099|ref|YP_003189355.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635002|dbj|BAI00976.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638057|dbj|BAI04024.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641111|dbj|BAI07071.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644166|dbj|BAI10119.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647221|dbj|BAI13167.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650274|dbj|BAI16213.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653265|dbj|BAI19197.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656318|dbj|BAI22243.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 537

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+  +YE+ +  F G+E   G E F TP  VV    ++L           P   R +YDP
Sbjct: 177 VLGRVYEYFLGGFAGAEGKRGGE-FYTPSSVVRTLVSML----------EPYKGR-VYDP 224

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    +   V   G   K+  I + +GQE    T  +    + +R + +D R + 
Sbjct: 225 CCGSGGMFVQSERFVETHGG--KLGDIAI-YGQESNHTTWRLARMNLAVRGIGADIRWN- 280

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPK 330
                +GS L +D     RF Y L+NPPF     W    +         E  R+  G P 
Sbjct: 281 ----NEGSFL-RDELKDLRFDYILANPPFNVSDWWNASLE---------EDPRWQYGKPP 326

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  +L H+     L P+G   A +VL++  + + +  + E EIRR ++E D+++ +
Sbjct: 327 AGNANYAWLQHIL--WHLAPDG--TAGVVLANGSMSSNQ--NSEGEIRRRMVEADVVDCM 380

Query: 391 VALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  LF+ T I   LW L+  K      +RRG++  I+A  L   +    + RR + D
Sbjct: 381 VALPGQLFYSTQIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLV---DRTRRELTD 437

Query: 447 DQRRQILDIY 456
           +   +I D Y
Sbjct: 438 EDVARIADTY 447


>gi|239998596|ref|ZP_04718520.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae 35/02]
 gi|240112514|ref|ZP_04727004.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae MS11]
 gi|240127799|ref|ZP_04740460.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 513

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 198/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++
Sbjct: 377 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVL 429

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 430 TEEHIAEIVKLFADK 444


>gi|90580558|ref|ZP_01236363.1| hsdM site-specific DNA-methyltransferase, type I modification
           [Vibrio angustum S14]
 gi|90438216|gb|EAS63402.1| hsdM site-specific DNA-methyltransferase, type I modification
           [Photobacterium angustum S14]
          Length = 567

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 149/332 (44%), Gaps = 44/332 (13%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +H D     ++ ++YE+++ +F     +    F TP  +V L   ++ +P +        
Sbjct: 184 VHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMI-EPFEG------- 235

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGM 259
               +YDP  G+GGF   +   +    +  +I P+     +  +GQE    T  +    M
Sbjct: 236 ---RVYDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQKISIYGQEYNHTTWQLAAMNM 292

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
            IR L+ D  +      +  ST +       R  + ++NPPF  K+W    D  +     
Sbjct: 293 AIRGLDYDFGK------EPASTYTNVQHPDLRADFIMANPPFNMKEWNTGVDDNDP---- 342

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               RF  G P + + +  ++ H+ + L    +  G  A++L++  +      + E  IR
Sbjct: 343 ----RFKYGQPPVGNANFAWMQHMLHHL----SADGSQALLLANGSM--SSTTNNEGTIR 392

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--ERRG-KVQLINATDLWTSIR 435
           + L+E DLIE +VALP  LF  T I   +W L+  KT   ++ G K++      L+  +R
Sbjct: 393 QALIEKDLIECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRARKGEVLFIDVR 452

Query: 436 NEG-KKRRIIND---DQRRQILDIYVSRENGK 463
           N G  K R++ D   D   ++ D+Y + + G+
Sbjct: 453 NLGYMKDRVLRDFTRDDIEKVADLYHAWKTGE 484


>gi|46143389|ref|ZP_00135350.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126208115|ref|YP_001053340.1| putative type I modification enzyme [Actinobacillus
           pleuropneumoniae L20]
 gi|126096907|gb|ABN73735.1| putative type I modification enzyme [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 521

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L +P +            +YDP 
Sbjct: 174 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-EPYEG----------RIYDPA 222

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       + +   H   P  +  +GQE  P T  +    M IR L  D  +   
Sbjct: 223 MGSGGFFVQTERFIRE---HQGNPNRVSIYGQEFNPTTWKLAAMNMAIRGLSFDFGKG-- 277

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T S      KR  + ++NPPF   +W     A +         R+  G P  S
Sbjct: 278 ----NADTFSNPQHLDKRMDFVMANPPFNMNEWWNQSLANDP--------RWKFGTPPSS 325

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+   L    +  G+ A++L++  + +    + E EIRR ++  DL+EA++A
Sbjct: 326 NANFAWLQHMIYHL----SEKGKMALLLANGSMSSNT--NNEGEIRRNIVRADLVEAMIA 379

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP+ LF  T I   +W+L+  K + R+G+V  I+A  L
Sbjct: 380 LPSQLFTNTQIPACIWVLN--KAKPRKGEVLFIDARQL 415


>gi|329113898|ref|ZP_08242666.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
 gi|326696764|gb|EGE48437.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
          Length = 537

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 46/310 (14%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+  +YE+ +  F G+E   G E F TP  VV    ++L           P   R +YDP
Sbjct: 177 VLGRVYEYFLGGFAGAEGKRGGE-FYTPSSVVRTLVSML----------EPYKGR-VYDP 224

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    +   V   G   K+  I + +GQE    T  +    + +R + +D R + 
Sbjct: 225 CCGSGGMFVQSERFVETHGG--KLGDIAI-YGQESNHTTWRLARMNLAVRGIGADIRWN- 280

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPK 330
                +GS L +D     RF Y L+NPPF     W    +         E  R+  G P 
Sbjct: 281 ----NEGSFL-RDELKDLRFDYILANPPFNVSDWWNASLE---------EDPRWQYGKPP 326

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  +L H+     L P+G   A +VL++  + + +  + E EIRR ++E D+++ +
Sbjct: 327 AGNANYAWLQHIL--WHLAPDG--TAGVVLANGSMSSNQ--NSEGEIRRRMVEADVVDCM 380

Query: 391 VALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  LF+ T I   LW L+  K      +RRG++  I+A  L   +    + RR + D
Sbjct: 381 VALPGQLFYSTQIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLV---DRTRRELTD 437

Query: 447 DQRRQILDIY 456
           +   +I D Y
Sbjct: 438 EDVARIADTY 447


>gi|59800848|ref|YP_207560.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae FA 1090]
 gi|254493318|ref|ZP_05106489.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae 1291]
 gi|268594456|ref|ZP_06128623.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae 35/02]
 gi|268598584|ref|ZP_06132751.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae MS11]
 gi|268686196|ref|ZP_06153058.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|293399447|ref|ZP_06643600.1| type I restriction-modification system, M subunit [Neisseria
           gonorrhoeae F62]
 gi|59717743|gb|AAW89148.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae FA 1090]
 gi|226512358|gb|EEH61703.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae 1291]
 gi|268547845|gb|EEZ43263.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae 35/02]
 gi|268582715|gb|EEZ47391.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae MS11]
 gi|268626480|gb|EEZ58880.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291610016|gb|EFF39138.1| type I restriction-modification system, M subunit [Neisseria
           gonorrhoeae F62]
          Length = 514

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 198/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|206603733|gb|EDZ40213.1| N-6 DNA methylase [Leptospirillum sp. Group II '5-way CG']
          Length = 524

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 45/288 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TPR VV +   +L     A +K        +YDP 
Sbjct: 161 MLGRVYEYFLSQFASAEGKKGGQFYTPRSVVRVLVEML-----APYKGR------VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   +I  I + +GQE    T  +    + IR + ++    L 
Sbjct: 210 CGSGGMFVQSEKFIEVHGG--RIGDISI-YGQESNHTTWKLAAMNLAIRGIAAN----LG 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K  +   +  +DL    +  Y L+NPPF    W  D+   ++        R+  G+P + 
Sbjct: 263 K--ENADSFHRDLHPDLKADYILANPPFNSSDWGGDRLREDR--------RWVYGVPPVG 312

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H  +   L PNG   A  VL++  L + +  SGE EIR+ ++E D+++ IVA
Sbjct: 313 NANFAWVQHFIS--HLAPNG--VAGFVLANGSLSSNQ--SGEGEIRKNMVEGDIVDCIVA 366

Query: 393 LPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINATDL 430
           LP  LF+ T I   LW +S  K            +R G++  I+A  L
Sbjct: 367 LPGQLFYSTQIPVSLWFVSRNKKNGKGQEGHALRDRSGEILFIDARKL 414


>gi|196037385|ref|ZP_03104696.1| type I restriction-modification system, M subunit [Bacillus cereus
           NVH0597-99]
 gi|196031627|gb|EDX70223.1| type I restriction-modification system, M subunit [Bacillus cereus
           NVH0597-99]
          Length = 526

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 144/325 (44%), Gaps = 47/325 (14%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
           AS SD  K +F D D +S   RL     EK   L  I    + I+  H +        + 
Sbjct: 135 ASESD-IKGLFADLDTTSN--RLGGIVAEKNKRLADILCGIAEIDFGHFEDNDIDAFGDA 191

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + S   +   +F TP+ V  L   L++D            I  +YDPTCG+G 
Sbjct: 192 YEYLISNYASNAGKSGGEFFTPQSVSRLLARLVMD--------GKVKINKVYDPTCGSGS 243

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L        +    H I      +GQE+      +    M +  +  +       +I++
Sbjct: 244 LLLQMKKQFEE----HIIEDGF--YGQEINITNFNLARMNMFLHNINYNHF-----SIKR 292

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKW--EKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           G TL   +   ++ F   +SNPP+  KW    D   +  E       RF P   L   S 
Sbjct: 293 GDTLLNPMHNDEKPFDAIVSNPPYSIKWVGADDPTLINDE-------RFAPAGKLAPKSK 345

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F+MH  + L    +  GRAAIV      +  RAG+ E  IR++L++N+ ++ ++AL
Sbjct: 346 ADFAFIMHSLSYL----SSKGRAAIVCFPGIFY--RAGA-EQTIRKYLVDNNFVDCVIAL 398

Query: 394 PTDLFFRTNIATYLWILSNRKTEER 418
           P +LFF T+IAT + +L+  K E +
Sbjct: 399 PENLFFGTSIATNILVLAKNKIENK 423


>gi|114567766|ref|YP_754920.1| type I restriction-modification system, M subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338701|gb|ABI69549.1| type I restriction-modification system, M subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 891

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 141/324 (43%), Gaps = 46/324 (14%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           PD ++   YE+LI+ F     +   +F TP +VV L   L            P    T+Y
Sbjct: 178 PD-LLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVQLT----------KPEAGNTIY 226

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPT G+GGFL  +  +V + G     P  L   GQ+      ++C   M++  +      
Sbjct: 227 DPTVGSGGFLIQSYQYVEEQGQD---PNDLALFGQDSNGTVWSICNMNMILHNI------ 277

Query: 271 DLSKNIQQGSTLSKDLFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                I+ G TL   L   K     F   L+NPPF + + +               RF  
Sbjct: 278 -TRFTIENGDTLEDPLILDKGKIRTFERVLANPPFSQNYSRANMKFS--------NRFWE 328

Query: 327 GLPKISD-GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             P+      ++F+ H+   L+  P+G    A ++    LF G     E  IR  L+ +D
Sbjct: 329 WCPETGKKADLMFVQHMLASLK--PDG--HMATIMPHGVLFRG---GKEKLIREILINDD 381

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +IEAI++LP  LF+ T I   + + +  K +  + KV  INA   +     EGK +  + 
Sbjct: 382 VIEAIISLPPGLFYGTGIPACILVCNKSKPDSLKNKVLFINADREYA----EGKAQNKLR 437

Query: 446 DDQRRQILDIYVSR-ENGKFSRML 468
            +   +I  ++ ++ E  K+SR++
Sbjct: 438 PEDIEKIDFVFTNKLEIPKYSRLV 461


>gi|260771741|ref|ZP_05880660.1| type I restriction-modification system M subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260613325|gb|EEX38525.1| type I restriction-modification system M subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 869

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 145/609 (23%), Positives = 255/609 (41%), Gaps = 114/609 (18%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---ECALEPTRSAVREKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   +      +    E   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQQVQFVTKQGMTPEDIKALNEEDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +++      +A  + ++T          +N R+ L ++    S   K +FE     
Sbjct: 66  DTVKYIQDNLGYFIAYDNLFSTWIDPTHDFDESNVRDALSAFSRLISPTYKKLFEGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSE 172
               +++L E AG   K  K  S +     ++P        V+  IYE+LI +F +   +
Sbjct: 126 LEKGLSQLGESAG---KRTKAISDLLHLIKSIPMNGKQGYDVLGYIYEYLIEKFAANAGK 182

Query: 173 GAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            A +F TP +V  L + ++   L   D +          +YDPT G+G  L   +N    
Sbjct: 183 KAGEFYTPHEVSVLMSHIIAHELKHKDTI---------EIYDPTSGSGSLL---INIGEA 230

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
            G + K    +  + QEL+ +T+ +    +++R +++   +      + G TL  D    
Sbjct: 231 VGKYAKNKDSITYYAQELKDKTYNLTRMNLIMRGIKASNIK-----TRNGDTLEDDWPYF 285

Query: 286 -------LFTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                   +        +SNPP+ + W+   KD D            RFG   PK +   
Sbjct: 286 DENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDP--------RYSRFGLA-PK-TKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H  +   L P+G     IVL    LF G     E EIR+ L+E + I+AI+ LP+
Sbjct: 336 FAFLLH--DLYHLKPDG--IMTIVLPHGVLFRG---GEEGEIRKQLIEQNHIDAIIGLPS 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T I T + +L  ++   +   V +++A+  +     EGK  ++   D +R I+D 
Sbjct: 389 NIFFGTGIPTVIIVLKQKR---QNTDVLIVDASKHFV---KEGKNNKLQASDIKR-IVDA 441

Query: 456 YVSREN-GKFSRMLDYRTF---GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            ++R++  KFS+++   T    GY        L +   +D +  A+     +W     LH
Sbjct: 442 VINRDSIDKFSQVVSKATLRDNGYN-------LNIPRYVDSSPAAQ-----SW----DLH 485

Query: 512 QSFWLDILKPMMQQIYPYGWA------ESFVKESIKSNEAKTLK----VKASKS-----F 556
            +    I    + Q++PY  A        FV +S   +E    K    VK +++     F
Sbjct: 486 ATMLGGIPNSEIAQLHPYWQAFPQLHDALFVAKSAAYSELAIAKQDVNVKITQNAQVGDF 545

Query: 557 IVAFINAFG 565
           I AF +AF 
Sbjct: 546 IRAFNSAFA 554


>gi|221195101|ref|ZP_03568157.1| type I restriction-modification system, M subunit [Atopobium rimae
           ATCC 49626]
 gi|221185004|gb|EEE17395.1| type I restriction-modification system, M subunit [Atopobium rimae
           ATCC 49626]
          Length = 859

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 64/335 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-----T 208
           V+  IYE+LI  F +   + A +F TP +V  L + ++            G ++      
Sbjct: 164 VLGYIYEYLISNFAANAGKKAGEFYTPHEVSLLMSEIV-----------AGHLKGRHEIE 212

Query: 209 LYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +YDPT G+G  L +    VA   G+   I      + QEL+  T+ +    +++R +++ 
Sbjct: 213 IYDPTSGSGSLLVNIGQAVAKRSGNKDSIKY----YAQELKENTYNLTRMNLVMRGIKA- 267

Query: 268 PRRDLSKNI--QQGSTLSKD---LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKE 315
                  NI  + G TL  D      G    Y        +SNPP+ ++W+     V+  
Sbjct: 268 ------SNIIARNGDTLEDDWPWFSEGHPETYQPLFVDAVVSNPPYSQRWDPTDKEVDP- 320

Query: 316 HKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                  RF G GL   S     FL+H  +   L P+G     IVL    LF G     E
Sbjct: 321 -------RFNGFGLAPKSKADYAFLLH--DLYHLRPDG--IMTIVLPHGVLFRG---GEE 366

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            EIR+ L+E D I+AI+ LP ++FF T I T + +L  ++T   R  V +I+A+  +   
Sbjct: 367 GEIRKNLIERDHIDAIIGLPANIFFGTGIPTIVMVLKKQRT---RSDVLIIDASKGYV-- 421

Query: 435 RNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
             EGK  ++   D RR I+D Y  RE+  +F R++
Sbjct: 422 -KEGKNNKLRASDIRR-IVDAYECREDIERFCRLV 454


>gi|257076849|ref|ZP_05571210.1| type I restriction-modification system methylation subunit
           [Ferroplasma acidarmanus fer1]
          Length = 507

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 159/358 (44%), Gaps = 39/358 (10%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           IA  +     +    DF       E   LL ++   F         +    M + YEH++
Sbjct: 110 IAKQNKELDGVVNRIDFIDFTKTRENRILLEQLFALFDKYNFSNKCIEGDAMGDAYEHIL 169

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            RF  E ++  E + TPR+VV L   +L DP        PGM  ++YDP CG+GG L +A
Sbjct: 170 MRFAPEKAKEGEVY-TPREVVRLMVDIL-DP-------QPGM--SVYDPACGSGGMLIEA 218

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTL 282
             HV       K   + + +G+E  P T+A+     ++         D+S+ +++ G +L
Sbjct: 219 YEHVKSRMGVDKANRVGL-YGEERSPTTYALAKMNTIL--------HDISESHLEVGDSL 269

Query: 283 SKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
               F      + F + L+NPP+ +K   +    + E K+    R+  G      G   +
Sbjct: 270 LYPKFKTASGLRHFDFVLANPPWSQKGYGEDTLKQAEFKD----RYAYGFVPQRYGDWAW 325

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+            + A+++    LF  R+ S E  IR+ +++  L++++  LP  +F
Sbjct: 326 IEHML------YTSKSKVAVIMDQGALF--RSNS-EKIIRQKIVDEKLLDSVTLLPEKIF 376

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + T  A  + I +  K EE R KV  I+A+  +     + +K  II +D   +I+  Y
Sbjct: 377 YNTGAAGAILIFNKEKQEEYRDKVLFIDASREYGK-HPDMRKLNIITNDNIDRIVSAY 433


>gi|117676179|ref|YP_863755.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117615003|gb|ABK50456.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 567

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 58/329 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +IYE+ + +F     +    F TP  +V L   ++ +P +            +YDP 
Sbjct: 193 ILGHIYEYFLGQFALAEGKKGGQFYTPASIVSLIVEMI-EPFEG----------RVYDPA 241

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +    +  +I P+     +  +GQE    T  +    M IR L+ D 
Sbjct: 242 MGSGGFFVQSEKFIERRANQKEIDPLTQKQRISIYGQEYNYTTWQLAAMNMAIRGLDYDF 301

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
            +      +  ST + D     R  + ++NPPF  K+W    D  +         R+  G
Sbjct: 302 GK------EPASTYTNDQHPDLRADFIMANPPFNMKEWNTGVDDNDP--------RWVYG 347

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+     L P+G    A++L++  +      + E EIR  L+ENDL+
Sbjct: 348 TPPSGNANFAWMQHML--YHLAPDGS--QALLLANGSM--SSTTNNEGEIRAALVENDLV 401

Query: 388 EAIVALPTDLFFRTNIATYLWIL----------SNRKTEERRGKVQLINATDLWTSIRNE 437
           E +VALP  LF  T I   +W L          S RK  +R+G+V  I+A       RN 
Sbjct: 402 ECMVALPGQLFTNTQIPACIWFLAKNKKARTDKSGRKLRDRKGEVLFIDA-------RNL 454

Query: 438 G-KKRRIIND---DQRRQILDIYVSRENG 462
           G  K R++ D   D  +++ D+Y + + G
Sbjct: 455 GYMKDRVLRDFTQDDIQKVADLYHAWKTG 483


>gi|258651342|ref|YP_003200498.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Nakamurella multipartita DSM 44233]
 gi|258554567|gb|ACV77509.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Nakamurella multipartita DSM 44233]
          Length = 548

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 189/469 (40%), Gaps = 77/469 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G    + +  VIL    L+ +  A +  R  +R +  A G     ++
Sbjct: 28  LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGIDEDQID 87

Query: 71  SFV----KVAGYS-FYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            F+    +  G+  F+   +   S L     G     N     +    D A     D + 
Sbjct: 88  GFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDYLMDANP 147

Query: 121 S--STIARL--------EKAGLLYKI--CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           S  +T+ R+         + G L  +     F+G      T    ++  +YE+ + +F  
Sbjct: 148 SLRATLPRIYNRDNVDQRRLGELLDLFNSARFTG---QGATKARDLLGEVYEYFLEKFAK 204

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP  VV +                P   R +YDP CG+GG        + 
Sbjct: 205 AEGKRGGEFYTPASVVRVLVE----------VLEPTRGR-VYDPCCGSGGMFVQTEKFLE 253

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDL 286
              +HH+    +  +GQEL   T  +    + I  L  +  PR         G T ++D+
Sbjct: 254 ---AHHREGSEISVYGQELNERTWRMAKMNLAIHGLSGNLGPR--------WGDTFARDI 302

Query: 287 FTGKRFHYCLSNPPFG-KKWEK-DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               +  Y L+NPPF  K W + DKD            R+  G+P   + +  ++ H+ +
Sbjct: 303 HPDVQADYVLANPPFNIKDWARNDKDP-----------RWKFGVPPAGNANYAWIQHIIS 351

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GG A +V+++  +       GE  IR  L+E DL+  +VALPT LF  T I 
Sbjct: 352 KLAP----GGSAGVVMANGSMST--QSGGEGAIRAQLVEADLVSCMVALPTQLFRSTGIP 405

Query: 405 TYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             LW  +  KT       +R G+V  I+A  +   +    +  R ++DD
Sbjct: 406 VCLWFFAKDKTVGTGGSVDRSGRVLFIDARSMGNMVD---RAERSLSDD 451


>gi|325283701|ref|YP_004256242.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus
           proteolyticus MRP]
 gi|324315510|gb|ADY26625.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus
           proteolyticus MRP]
          Length = 522

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 148/327 (45%), Gaps = 42/327 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATAL 190
           LL  + K+F+  +L      D     ++E+ +  F  +E S+G E F TP+ +V L   +
Sbjct: 124 LLAGMLKSFTFSDLTAGLQGD-AFGRVFEYFLGEFARNEGSKGGE-FYTPQSLVKLMVEI 181

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           + +P              +YDP CG+GG    +   V            L  +GQE   E
Sbjct: 182 M-EP----------FHGKIYDPACGSGGMFVQSARFVEQ--HQRSAADDLSVYGQEKTSE 228

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDK 309
           T  +    + I  L  D        I+QG+T  +DL     +F + ++NPPF  K     
Sbjct: 229 TARLARMNLAIHGLSGD--------IKQGNTFYEDLHASPGKFDFAMANPPFNVK----- 275

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             V+KE  + +  R   G P   + + L+L ++A+ L    N GGRA +V+++S      
Sbjct: 276 -GVDKERISNDQKRLPYGTPSTDNANYLWLQYIASSL----NSGGRAGVVMANSA---SD 327

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINAT 428
           A   E  IR+ ++E+ +++ +VA  ++LF+   +   LW +   +K   R   V  I+A 
Sbjct: 328 ARGSEQLIRQRMIEDGVVDVMVATSSNLFYTVTLPATLWFMDKGKKGTPREDTVLFIDAR 387

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDI 455
           + +  +    +  R + DDQ   + +I
Sbjct: 388 NTYQQVT---RAIRELRDDQVELLANI 411


>gi|241888682|ref|ZP_04775989.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864705|gb|EER69080.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
          Length = 526

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 41/266 (15%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + S   +   +F TP+ V  L   +++D  D         I  +YDPTCG+G 
Sbjct: 191 YEYLISNYASNAGKSGGEFFTPQTVSRLLAKIVVDGKDK--------INKVYDPTCGSGS 242

Query: 219 FLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            L              K   + +    +GQE+    + +    M +  +  +   D S  
Sbjct: 243 LLL----------QMRKFECVEIEEGYYGQEINMTNYNLARMNMFLHNVNYN---DFS-- 287

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL       +R F   +SNPP+  KW  D D       N E  RF P   L   S
Sbjct: 288 IKRGDTLLNPYHGEERPFDAIVSNPPYSIKWIGDADPT---LINDE--RFAPAGKLAPKS 342

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N+ ++ ++ 
Sbjct: 343 YADYAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-EKTIRKYLVDNNFVDCVIQ 395

Query: 393 LPTDLFFRTNIATYLWILSNRKTEER 418
           LP +LFF T+IAT + +L+  KTE +
Sbjct: 396 LPDNLFFGTSIATCVLVLAKNKTENK 421


>gi|237807983|ref|YP_002892423.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas
           auensis DSM 9187]
 gi|237500244|gb|ACQ92837.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas
           auensis DSM 9187]
          Length = 567

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 56/329 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +IYE+ +  F     +    F TP  +V L   ++ +P +            +YDP 
Sbjct: 193 ILGHIYEYFLGEFALAEGKKGGQFYTPASIVTLIVEMI-EPFEG----------RVYDPA 241

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +      + I P+     +  +GQE    T  +    M IR L+ D 
Sbjct: 242 MGSGGFFVQSEKFIERYAGKNNIDPLTQKQKISIYGQEYNYTTWQLAAMNMAIRGLDYDF 301

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
            +      +  ST + D     R  + ++NPPF  K+W+   D  +   K G+       
Sbjct: 302 GK------EPASTYTNDQHPDLRADFIMANPPFNMKEWDAGVDDNDPRWKYGK------- 348

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+     L PNG    A++L++  +      + E EIR+ L+ NDLI
Sbjct: 349 -PPSGNANFAWLQHML--YHLAPNGS--QALLLANGSM--SSTTNNEGEIRKNLVTNDLI 401

Query: 388 EAIVALPTDLFFRTNIATYLWILSN----------RKTEERRGKVQLINATDLWTSIRNE 437
           E +VALP  LF  T I   +W L+N          RK   R+G+V  I+A  L       
Sbjct: 402 ECMVALPGQLFTNTQIPACIWFLTNNKGERTDKAGRKLRNRKGEVLFIDARQLGYM---- 457

Query: 438 GKKRRIIND---DQRRQILDIYVSRENGK 463
             K R++ D   D  +++ DI+ + + G+
Sbjct: 458 --KDRVLRDFTMDDIQKVADIFHAWKMGE 484


>gi|297250308|ref|ZP_06864065.2| type I restriction-modification system, M subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296839226|gb|EFH23164.1| type I restriction-modification system, M subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 514

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 199/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+       R F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV  S P    R G+ E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIV--SFPGIFYRGGT-EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|170017258|ref|YP_001728177.1| Type I restriction-modification system, M subunit [Leuconostoc
           citreum KM20]
 gi|169804115|gb|ACA82733.1| Type I restriction-modification system, M subunit [Leuconostoc
           citreum KM20]
          Length = 531

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 167/370 (45%), Gaps = 49/370 (13%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D  K +F D D +ST       ++   + ++ +    I+L        V+ + YE+LI +
Sbjct: 125 DQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHD--GDVIGDAYEYLIGQ 182

Query: 166 FGSEVSEGAEDFMTPRDVVHLAT--ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           F +   + A +F TP+ V  + +  A +   D A F         +YDPT G+G  + + 
Sbjct: 183 FAAGAGKKAGEFYTPQAVSRIISEIAAIGQEDRAPFH--------IYDPTMGSGSLMLNI 234

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             ++++       P  +  HGQEL   T+ +    +++  ++ D       N+  G TL 
Sbjct: 235 RRYLSN-------PKQVHYHGQELNTTTYNLARMNLILHGVDQD-----RMNLNNGDTLD 282

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            D  T +  +F   + NPP+  KW     A +K   +    RFG   PK S     FL+H
Sbjct: 283 ADWPTEEPHQFDAVVMNPPYSAKWS----AADKFLSDQRFERFGKLAPK-SKADFAFLLH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F+ T
Sbjct: 338 GFYHLK----DSGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFYGT 390

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I T + IL   ++      V  I+A+  +    ++ K + +++    ++I+  Y  R +
Sbjct: 391 SIPTTVIILKKNRSSR---DVLFIDASQDF----DKQKTQNVLSPKHIQKIVSAYKERTD 443

Query: 461 NGKFSRMLDY 470
             K+S +  Y
Sbjct: 444 TEKYSHVASY 453


>gi|254303926|ref|ZP_04971284.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324118|gb|EDK89368.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 520

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 144/317 (45%), Gaps = 42/317 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T L L             +  +YDP CG+G 
Sbjct: 185 YEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTL--------VGKTEVNKVYDPACGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +      +         GQE+   T+ +C   M +  ++ D       +I  
Sbjct: 237 LLLKFAKILGKDNVRNGF------FGQEINITTYNLCRINMFLHDIDFDKF-----DIAH 285

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL +   +  + F   +SNPP+  KWE D   +          RF P   L   S   
Sbjct: 286 GDTLIEPAHWDDEPFEAIVSNPPYSIKWEGDSSQILIND-----SRFSPAGVLAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH  + L       G AAIV     ++  R+G+ E +IR++L++N+ I+ I+ LP 
Sbjct: 341 LAFIMHSLSWLA----SNGTAAIVCFPGVMY--RSGA-EQKIRKYLIDNNYIDCIIQLPD 393

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K      DD    I++ 
Sbjct: 394 NLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNKMTEKHIDD----IVEK 446

Query: 456 YVSRENGKF-SRMLDYR 471
           +  RE+ ++ S +++Y 
Sbjct: 447 FTKREDIEYISNLVEYE 463


>gi|313668698|ref|YP_004048982.1| type I restriction-modification system protein [Neisseria lactamica
           ST-640]
 gi|313006160|emb|CBN87622.1| putative type I restriction-modification system protein (ec
           2.1.1.72) [Neisseria lactamica 020-06]
          Length = 514

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 199/495 (40%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEIQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +    + K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+       R F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV  S P    R G+ E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIV--SFPGIFYRGGT-EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|238917453|ref|YP_002930970.1| type I restriction enzyme M protein [Eubacterium eligens ATCC
           27750]
 gi|238872813|gb|ACR72523.1| type I restriction enzyme M protein [Eubacterium eligens ATCC
           27750]
          Length = 892

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 48/310 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R+F +E  +    F TP +V  +   ++                T+ D
Sbjct: 152 DDIIGDAYEYLMRKFATESGKSKGQFYTPAEVSRILANVVG------ISHCTDASATVCD 205

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A++           P  ++ +GQE E  T     AG+   ++ +   R 
Sbjct: 206 PACGSGSLLIRAIDAA---------PFPIMGYGQEKESTT-----AGLA--KMNAVLHRK 249

Query: 272 LSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
               I+ G+T S   +  K       RF Y ++NPPF  K  +D  A        E GRF
Sbjct: 250 AEIIIKSGNTFSNPQYMDKSDNSVLERFDYIVANPPFSMKNWRDGIA------GKEYGRF 303

Query: 325 -GPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            G G +P   +G   +LMH+   L+      G+AA++L    LF G A   E+ IR  ++
Sbjct: 304 EGYGDMPPEKNGDYAWLMHILKTLK----SNGKAAVILPHGVLFRGNA---EATIRETII 356

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   I+ I++LP +LF+ T IA  + ++       R+G + +I+A+  +     +G K R
Sbjct: 357 KKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQG-IFMIDASRGYVK---DGNKNR 412

Query: 443 IINDDQRRQI 452
           +   D  R I
Sbjct: 413 LRERDIYRII 422


>gi|169823773|ref|YP_001691384.1| type I restriction-modification system specificity subunit
           [Finegoldia magna ATCC 29328]
 gi|167830578|dbj|BAG07494.1| type I restriction-modification system specificity subunit
           [Finegoldia magna ATCC 29328]
          Length = 828

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 149/328 (45%), Gaps = 38/328 (11%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+ + +F  E  +    F TP +V  + + L+   D    + SP    TL+D
Sbjct: 137 DDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRVISRLIGIGD---IENSPNKKWTLHD 193

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L  A +      +   I  I   +GQE   +T  +     ++    +     
Sbjct: 194 PAAGSGSLLIRAADEAPVDSNGDSIVTI---YGQEKYSDTAGLAKMNFILHNKGTGE--- 247

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRF- 324
               +   +TLS   +T      ++F + + NPPF  K W     A E  +      RF 
Sbjct: 248 ----VHSDNTLSAPYYTDDFGELRKFDFIVMNPPFSDKDWSDGIKADEDTYH-----RFD 298

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           G G+P   +G   + +H+   L    N  G+A I+L    LF G A   E  IR+ +L+ 
Sbjct: 299 GYGIPPEKNGDYAWFLHVLKAL----NENGKAGIILPHGVLFRGNA---EETIRKEILKR 351

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ IV LP++LF+ T I   + I+     ++R G + +I+A+D     + +G K R+ 
Sbjct: 352 KYIKGIVGLPSNLFYGTGIPACIIIIDKENADKREG-LFMIDASD---GFKKDGDKNRLR 407

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYR 471
             D  + I+ ++ ++   K +SR + Y+
Sbjct: 408 EQDIEK-IVQVFTNKTEIKGYSRFIAYK 434


>gi|296121477|ref|YP_003629255.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
 gi|296013817|gb|ADG67056.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
          Length = 533

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 48/326 (14%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T +++E   L+  + KN S I   P          IYE+ +  F     +   +F TP  
Sbjct: 124 TYSKIENTTLV-SLLKNLSSI---PVDAEGDTFGKIYEYFLGNFARAEGQKGGEFFTPTS 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++           P   R +YDP CG+GG    + + +    +HH  P + + 
Sbjct: 180 LVKLIVEII----------QPYHGR-IYDPACGSGGMFVQSADFIK---AHHNNPAVEIS 225

Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
            +GQE   ET  +C   + +  L  D        I+QG+T  +D      +F + ++NPP
Sbjct: 226 IYGQERVDETRQLCQMNLAVHGLSGD--------IRQGNTYYEDPHESVGKFDFVMANPP 277

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F      + D V+KE K  E  RF  G+P+  + + L++    + L    N  GRA  V+
Sbjct: 278 F------NVDKVDKE-KLKEDPRFPLGMPRADNANYLWIELFYSSL----NATGRAGFVM 326

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++S      A   E EIR+ LL+  +++ ++A+  + F+   +   LW L   K+     
Sbjct: 327 ANSA---ADARQSEMEIRQKLLKAHVVDVMIAIGPNFFYTVTLPCTLWFLDKGKSNLSGK 383

Query: 416 -EERRGKVQLINATDLWTSIRNEGKK 440
             +R+ +V  I+A  ++  +    +K
Sbjct: 384 GSQRKEQVLFIDARHIFRQVDRAHRK 409


>gi|219870941|ref|YP_002475316.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
 gi|219691145|gb|ACL32368.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
          Length = 515

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 195/485 (40%), Gaps = 81/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A ++ G     DF + +L     R      +  +E    +V   Y  F  
Sbjct: 9   AELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN--YAQFSD 66

Query: 65  SNIDLESF----VKVAGYSFYNTSEY-SLSTLGSTNTRNNLE--SYIASFSDNA------ 111
            +  LE      +K  GY  Y +  + ++     TN   N+E     A   ++A      
Sbjct: 67  DDPILEQIKDDTIKSKGYFIYPSQLFENVVKNAHTNPALNIELAEIFADIENSANGYPSE 126

Query: 112 ---KAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSN 157
              K +F DFD       +T+A  +K   L  + K    ++       H D   D     
Sbjct: 127 QDIKGLFADFDTRSNRLGNTVA--DKNKRLTAVLKGVEELDFGKFEDNHIDLFGDA---- 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP++V  L   L L             +  +YDP  G+G
Sbjct: 181 -YEFLISNYAANAGKSGGEFFTPQNVSKLIAQLAL--------HGQKTVNKIYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D    H I       GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDD----HVIEDGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIA 280

Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   K F   +SNPP+  +W  D++      +     RF P   L   S  
Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPTLINDE-----RFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+ L+    N      ++ D+   +I+ 
Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441

Query: 455 IYVSR 459
           ++  +
Sbjct: 442 LFSEK 446


>gi|300869811|ref|YP_003784682.1| type-I restriction-modification system HsdM [Brachyspira pilosicoli
           95/1000]
 gi|300687510|gb|ADK30181.1| type-I restriction-modification system, HsdM [Brachyspira
           pilosicoli 95/1000]
          Length = 529

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 201/488 (41%), Gaps = 83/488 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVRE-KYLAFGGSNI 67
           IWK A+DL G     DF + +L     R +   L          S  +E  Y      ++
Sbjct: 17  IWKIADDLRGSVDGWDFKQYVLGMLFYRYISEHLANYLNQNEWDSGNKEFNYADLDDKDV 76

Query: 68  -DLES-FVKVAGYSFY------------NTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            D++S  +K  G+  Y            N  +    +    N    L+       ++AK 
Sbjct: 77  EDVKSDIIKEQGFFIYPSELFENIRKEANNQDSKKDSKEKHNLNEKLQKIFKDIENSAKG 136

Query: 114 ---------IFEDFDFSS------TIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMS 156
                    +F+D D +S       I R E+   L K+    + IEL    D   D    
Sbjct: 137 TKSETKIAGLFDDIDVNSNKLGPTVIKRNER---LRKLINGIADIELGDFKDHSID-AFG 192

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP++V  L T + +             I+ +YDP CG+
Sbjct: 193 DAYEYLMGMYASSAGKSGGEFFTPQEVSELLTKITI--------TGKSEIKRVYDPACGS 244

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      + D     KI       GQE+   T+ +C   M +  +  +       +I
Sbjct: 245 GSLLLKFKRILKD--EEKKIHYF----GQEINITTYNLCRINMFLHDIGFEKF-----DI 293

Query: 277 QQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL++    + + F   +SNPP+  KWE + + +          R+ P   L   S 
Sbjct: 294 AHGDTLTEPKHLSDEPFDAIVSNPPYSIKWEGEDNTLLINDP-----RYSPAGILAPKSK 348

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L+        AAIV     ++ G A   E +IR++L++N+ IE I+ L
Sbjct: 349 ADFAFILHSLSWLDT----AALAAIVCFPGIMYRGGA---EQKIRKYLIDNNYIECIIQL 401

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T+IAT + +LS  K +    K   I+A++ +    N  K    ++D     IL
Sbjct: 402 PDNLFYGTSIATCIMVLSKSKID---SKTLFIDASEDYEKATNNNK----LSDKNIEDIL 454

Query: 454 DIYVSREN 461
             + +RE+
Sbjct: 455 SYFKARES 462


>gi|295107442|emb|CBL04985.1| Type I restriction-modification system methyltransferase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 493

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 122/271 (45%), Gaps = 28/271 (10%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L++R   +   GA  + TPR +++     +           P   +T+ DP 
Sbjct: 125 VKGDIYEGLLQRIAEDTKSGAGQYFTPRPLINTIIKCV----------QPKPEKTVCDPC 174

Query: 214 CGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CG+GGFL  A +++ +         K       HG E+ P T  +C+  + +  +     
Sbjct: 175 CGSGGFLLAAKSYIEEAYQLDADQKKFLKNEAFHGWEIVPATRRLCLMNLFLHNIGD--F 232

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-EHKNGELGRFGPGL 328
            D+    +  + LS     G RF Y L+NPPFGKK      A E  E  + EL       
Sbjct: 233 NDVPPITRNDALLSD---PGMRFDYVLTNPPFGKKATLKAAAGEDGELVDEELSYSRQDF 289

Query: 329 PKISDGSML-FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              S    L F+ H+   L+     GG AA+V+  + LF G  G+GE+ +RR LLE   +
Sbjct: 290 WATSSNKQLNFVQHIHTILKT----GGTAAVVVPDNVLFEG--GAGET-VRRKLLETANL 342

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEER 418
             I+ LPT +F++  +   +    NR   ER
Sbjct: 343 HTILRLPTGIFYKPGVKANVIFFENRPGSER 373


>gi|294101456|ref|YP_003553314.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261]
 gi|293616436|gb|ADE56590.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261]
          Length = 493

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 66/460 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LAFGGSNIDLESF 72
           +W+ A+ L G+ + +D+  V+L    L+ +  + E       EKY  L       + +  
Sbjct: 11  LWEMADKLRGNIQPSDYKDVVLGLIFLKYISDSFE-------EKYNELVAEEEGFEEDRD 63

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIAR 126
             VA   FY         +     +N  +S I    D+A    E  +           AR
Sbjct: 64  AYVAENIFYVPPSARWDFI----KKNAKQSTIGQIIDDAMITIERENRNLKGVLPKNYAR 119

Query: 127 --LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             L+KA L  ++   FS    + +     ++  +YE+ + +FGS  SEG  +F TP  +V
Sbjct: 120 PELDKAKL-GELVDLFSFNLGNKEAKAQDILGRVYEYFLGKFGS--SEG--EFYTPPSIV 174

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   ++           P   R +YDP CG+GG    +   V +   H      +   G
Sbjct: 175 KLLVGMI----------EPYKGR-VYDPCCGSGGMFVQSSRFVEE---HQGRKDDIHIFG 220

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T  +C   + IR +      D +   +   T   DL    R  Y L+NPPF   
Sbjct: 221 QEYTATTWRLCKMNLAIRGI------DGNLGARDADTFGNDLHKNIRADYILANPPFNVS 274

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D   +  +       R+  G+P   + +  ++ H+ +KL    +  G A  VL++  
Sbjct: 275 ---DYTLIPDD------ARWKYGIPPEKNANYAWIEHIISKL----SPTGVAGFVLANGS 321

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           +        E+EIR+ ++E  L++ IV +P +LF+   I   LW +S +K E ++ K+  
Sbjct: 322 M--STTTKAEAEIRKNIIEAGLVDCIVTMPPNLFYNVTIPVCLWFIS-KKRENKQDKILF 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGK 463
           I+A  + T +    +K R  +D +  +I D Y + R+N K
Sbjct: 379 IDARKMGTMVT---RKHREFSDGEIAKIYDTYHNWRDNKK 415


>gi|302528797|ref|ZP_07281139.1| type I restriction-modification system, M subunit [Streptomyces sp.
           AA4]
 gi|302437692|gb|EFL09508.1| type I restriction-modification system, M subunit [Streptomyces sp.
           AA4]
          Length = 541

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 190/480 (39%), Gaps = 80/480 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L + +WK A+ L G      +  VIL    L+ +  A +  R A+R    A G     + 
Sbjct: 18  LKDTLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAYDERREAIRADLTAEGYDAEQIA 77

Query: 71  SFV----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYI----ASFSDNAKAIFEDFD--- 119
             +    +  GY  +         +  T   + L  Y     A  ++ AK I +  D   
Sbjct: 78  DLIDDPEEYQGYGVF--------VVPPTAQWDYLAQYAKGKPAEGTEPAKNIGQLIDEAM 129

Query: 120 ---------FSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                       T+ RL         + G L  +  N +      +     +M  +YE+ 
Sbjct: 130 DLVMKTNPALQGTLPRLYNKDNIDQRRLGELIDLF-NSARFSRQGEHRARDLMGEVYEYF 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  F     +   +F TP  VV +   +L        + S G +   YDP CG+GG    
Sbjct: 189 LGNFARSEGKRGGEFFTPPSVVRVIVEVL--------EPSSGRV---YDPCCGSGGMFVQ 237

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + +   H+  P  +   GQE   ET  +    + I  +E+          + G T 
Sbjct: 238 TEKFIYE---HNGDPKDVSIFGQESLEETWRMAKMNLAIHGIENK-----GLGARWGDTF 289

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           ++D     +  Y ++NPPF  K+           +N E  R+  G+P  ++ +  ++ H+
Sbjct: 290 ARDQHADLQMDYVMANPPFNIKYWS---------RNTEDPRWKFGVPPATNANYAWIQHI 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             KL      GG A +V+++  + +    +GE  IR  ++E DL+  +VALPT LF  T 
Sbjct: 341 LYKLAP----GGSAGVVMANGSMSSN--SNGEGAIRAQIVEADLVSCMVALPTQLFRSTG 394

Query: 403 IATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           I   +W  +  K        +R G+V  I+A +L   +    +  R ++++   +I D Y
Sbjct: 395 IPVCVWFFAKDKRAGKHGAVDRSGQVLFIDARELGYMV---DRAERTLSNEDIAKIADTY 451


>gi|28868301|ref|NP_790920.1| type I restriction-modification system subunit M [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851538|gb|AAO54615.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 576

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 38/283 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TP  +V    A+L +P              +YDP 
Sbjct: 218 LLGQVYEYFLGQFASAEGKRGGQFYTPASIVKTLVAVL-NPHHG----------KVYDPC 266

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR +      D +
Sbjct: 267 CGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQESNPTTWRLAAMNLAIRGM------DFN 317

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +   +  ++  +  R  + L+NPPF     W    D            R+  G P  
Sbjct: 318 LGKEPADSFIRNQHSDLRADFVLANPPFNISDWWHGSLDGDS---------RWVYGTPPQ 368

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+   L+      GRA IVL++  + + +  + E +IRR ++E D++E +V
Sbjct: 369 GNANYAWLQHMLFHLK----SSGRAGIVLANGSMSSSQ--NSEGDIRRAMVEADVVEVMV 422

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           ALP  LFF T I   LW L+ +K  +R G+V  I+A  L T+I
Sbjct: 423 ALPGQLFFNTQIPACLWFLAKQKN-KRPGEVLFIDARKLGTNI 464


>gi|309809689|ref|ZP_07703545.1| type I restriction-modification system, M subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308170049|gb|EFO72086.1| type I restriction-modification system, M subunit [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 353

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 39/304 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   +F TP DV  L T L               +  +YDP CG+G 
Sbjct: 18  YEYLMTMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEVNKVYDPACGSGS 69

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  ++  +   G  +        +GQE+   T+ +C   M +  +E D + D++    +
Sbjct: 70  LLLKSLKVLGKEGVRNGF------YGQEINITTYNLCRINMFLHDVEFD-KFDVA---CE 119

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            +  S   +  + F   +SNPP+  KW+ D + +          RF P   L   S   +
Sbjct: 120 DTLTSPQHWDDEPFELIVSNPPYSIKWDGDANPLLINDP-----RFAPAGVLAPKSKADL 174

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP++
Sbjct: 175 AFIMHSLAWLA----SNGTAAIVCFPGIMYRGGA---EKKIRQYLVDNNFIDCIIQLPSN 227

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IAT + ++   K + R      I+A++    + N  K    +  +   +I+DI+
Sbjct: 228 LFFGTPIATCIMVIKKNKIDNR---TLFIDASNECVKVTNNNK----LTPENIDRIVDIF 280

Query: 457 VSRE 460
             RE
Sbjct: 281 TKRE 284


>gi|167854665|ref|ZP_02477445.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus parasuis 29755]
 gi|167854202|gb|EDS25436.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus parasuis 29755]
          Length = 515

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 195/485 (40%), Gaps = 81/485 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW+ A ++ G     DF + +L     R      +  +E    +V   Y  F  
Sbjct: 9   AELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN--YAQFSD 66

Query: 65  SNIDLESF----VKVAGYSFYNTSEY-SLSTLGSTNTRNNLE--SYIASFSDNA------ 111
            +  LE      +K  GY  Y +  + ++     TN   N+E     A   ++A      
Sbjct: 67  DDPILEQIKDDTIKSKGYFIYPSQLFENVVKDAHTNPTLNIELAEIFADIENSANGYPSE 126

Query: 112 ---KAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSN 157
              K +F DFD       +T+A  +K   L  + K    ++       H D   D     
Sbjct: 127 QDIKGLFADFDTRSNRLGNTVA--DKNKRLTAVLKGVEELDFGKFEDNHIDLFGDA---- 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP++V  L   L L             +  +YDP  G+G
Sbjct: 181 -YEFLISNYAANAGKSGGEFFTPQNVSKLIAQLAL--------HGQKTVNKIYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D    H I       GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDD----HVIEDGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIA 280

Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   K F   +SNPP+  +W  D++      +     RF P   L   S  
Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPTLINDE-----RFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+ L+    N      ++ D+   +I+ 
Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441

Query: 455 IYVSR 459
           ++  +
Sbjct: 442 LFSEK 446


>gi|229496095|ref|ZP_04389817.1| type I restriction-modification system, M subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316991|gb|EEN82902.1| type I restriction-modification system, M subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 823

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 49/328 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L++ F +E       F TP +V  +   +L         E     +T+YD
Sbjct: 137 DDLLGDAYEYLMKNFAAESGRRKGQFYTPAEVSRVMAKVLR------IHELDRGEQTIYD 190

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A+   ++        P +   GQE +  T A+    ML+  + +     
Sbjct: 191 PTCGSGSLLLRALAEASN--------PRVSICGQEKDGTTAALAKMNMLLHGISN----- 237

Query: 272 LSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKK-W---EKDKDAVEKEHKNGELGR 323
               I+ G TL     K +     F  C++NPPF +K W     +KD  E+  K  EL  
Sbjct: 238 --SEIKVGDTLGDPQFKQMGILSTFDVCVANPPFSEKEWFSPALEKDTYERWTK--EL-- 291

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               LP    G   FLMHL   ++   +  GR A +L    LF G A   E  IR+ ++ 
Sbjct: 292 ----LPPAKCGDYAFLMHLIASMK---SEEGRGACILPHGVLFRGNA---EYTIRKDIIR 341

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              I+ I+ LP +LFF T I   + ++  +  + R+G +  I+A + +     +G K R+
Sbjct: 342 KRYIKGIIGLPANLFFGTGIPASIIVIDKKDRDSRKG-IFFIDAKEGYM---KDGAKNRL 397

Query: 444 INDDQRRQILDIYVSREN-GKFSRMLDY 470
              D +R I+D + +++    + RM+++
Sbjct: 398 REQDIKR-IVDAWEAQQPIPHYCRMVEW 424


>gi|298253166|ref|ZP_06976958.1| type I restriction system adenine methylase (hsdM) [Gardnerella
           vaginalis 5-1]
 gi|297532561|gb|EFH71447.1| type I restriction system adenine methylase (hsdM) [Gardnerella
           vaginalis 5-1]
          Length = 561

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 50/364 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVM---SNIYEHLI 163
           S + K +F D+D ++        G   +  K    I E+   +V + V+    + YE+L+
Sbjct: 159 SGDFKGLFSDYDVNNIKLADTVEGRNKRFVKLLQVISEMKLGSVNNNVIEAFGDAYEYLM 218

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL--T 221
             + S   +   ++ TP +V  L T L               I ++YDP CG+G  L  T
Sbjct: 219 GLYASNAGKSGGEYFTPAEVSMLLTRL--------GTTGKSSISSVYDPACGSGSLLLKT 270

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +  + +             +GQE    ++ +C   M +  +  +        I  G T
Sbjct: 271 KKVLGIENINGGF--------YGQEKNVTSYNLCRMNMFLHDVNFNKFE-----ITCGDT 317

Query: 282 L-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L +  +   K+F   +SNPP+   WE D + +          RF P   L   S   M F
Sbjct: 318 LINPQIDANKKFELVVSNPPYSTSWEGDSNPLMINDP-----RFAPAGVLAPKSKADMAF 372

Query: 339 LMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++H LA+  E      G AAIV     ++ G A   E +IR++L+E++ ++ ++ LP++L
Sbjct: 373 VLHCLAHLAE-----DGAAAIVCFPGIMYRGGA---EQKIRQYLIEHNAVDCVIQLPSNL 424

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IAT + +L  RK ++    +  ++A+  +    N  K    ++D+   QI+  Y 
Sbjct: 425 FFGTSIATCIMVL--RKNKQNDTSILFVDASQQFVKSTNSNK----LSDENIEQIVKWYT 478

Query: 458 SREN 461
           SR++
Sbjct: 479 SRQD 482


>gi|194098143|ref|YP_002001191.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae NCCP11945]
 gi|193933433|gb|ACF29257.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae NCCP11945]
          Length = 514

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 197/495 (39%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|240016160|ref|ZP_04722700.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA6140]
 gi|260440928|ref|ZP_05794744.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
          Length = 513

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 197/495 (39%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 377 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 429

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 430 TEEHIAEIVKLFADK 444


>gi|241762572|ref|ZP_04760646.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372833|gb|EER62530.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 495

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 43/308 (13%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+  +YE+ +  F G+E   G E F TP  VV    ++L           P   R +YDP
Sbjct: 140 VLGRVYEYFLGGFAGAEGKRGGE-FYTPSSVVRTLVSML----------EPYKGR-VYDP 187

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    +   V   G   K+  I + +GQE    T  +    + +R + +D R + 
Sbjct: 188 CCGSGGMFVQSERFVETHGG--KLGDIAI-YGQESNHTTWRLARMNLAVRGIGADIRWN- 243

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                +GS L +D     RF Y L+NPPF      D +A  +E    + G+     P   
Sbjct: 244 ----NEGSFL-RDELKDLRFDYILANPPFNVS---DWNASLEEDPRWQYGK-----PPAG 290

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L P+G   A +VL++  + + +  + E EIRR ++E D+++ +VA
Sbjct: 291 NANYAWLQHIL--WHLAPDG--TAGVVLANGSMSSNQ--NSEGEIRRRMVEADVVDCMVA 344

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF+ T I   LW L+  K +    +R G++  I+A  L   +    + RR + D+ 
Sbjct: 345 LPGQLFYSTQIPACLWFLTRTKKQKGWRDRGGEILFIDARKLGKLV---DRTRRELTDED 401

Query: 449 RRQILDIY 456
             +I D Y
Sbjct: 402 VARIADTY 409


>gi|260903741|ref|ZP_05912063.1| type I restriction-modification system, M subunit [Brevibacterium
           linens BL2]
          Length = 523

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 194/481 (40%), Gaps = 68/481 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSAVREKYLA 61
           A L   IW+ A DL G     DF   +L     R +   L       E     V   Y  
Sbjct: 11  AELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNKNEHDAGEVSFDYRL 70

Query: 62  FGGSNIDLESFVKVAGYSFY--------NTSEYSLS--TLGSTNTR--NNLESYI--ASF 107
              S+ +      VA   FY        N  + +     L  T  R  NN+E+       
Sbjct: 71  AADSDAEFARDEVVAEKGFYILPSDLFANVRDRAAGDENLNETLERVFNNIEASAMGTDS 130

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYEHL 162
            D+ K +F+D D +S       A    K+ K    I   P     D   D +  + YE+L
Sbjct: 131 EDDIKGLFDDLDVNSNKLGSTVAKRNQKLVKLLDAIGDLPLGRWEDNSID-LFGDAYEYL 189

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++ + +   +   ++ TP++V  L   + +             +  +YDP  G+G  L  
Sbjct: 190 MQMYAANAGKSGGEYYTPQEVSELLARITV--------AGKKQVNKVYDPAVGSGSLLLK 241

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +               +GQE+   T+ +    M +  +          N+  G TL
Sbjct: 242 FDKVLGKNNVRQGF------YGQEINLTTYNLARINMFLHDVNY-----ADFNLAHGDTL 290

Query: 283 SK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
           +    +  + F   +SNPP+  KW+ D + +    +     RF P   L   S   + F 
Sbjct: 291 TDPQHWDDEPFEAIVSNPPYSIKWDGDANPLLINDE-----RFAPAGVLAPKSKADLAFT 345

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ I+ ++ LP DLFF
Sbjct: 346 MHMLSWLAV----NGTAAIVEFPGVLYRGGA---ERKIRQYLVDNNYIDTVIQLPPDLFF 398

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IAT + +L   K  ++ G V  I+A+      +  G K +++ + Q R IL+ + +R
Sbjct: 399 GTTIATCILVL---KKSKKTGDVLFIDAS---AEFKRVGNKNKLLEEHQAR-ILEAFTTR 451

Query: 460 E 460
           E
Sbjct: 452 E 452


>gi|251772354|gb|EES52922.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 522

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 45/288 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TPR VV +   +L          +P   R +YDP 
Sbjct: 161 MLGRVYEYFLSQFASAEGKRGGQFYTPRSVVRVLVEML----------APYKGR-VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   +I  I + +GQE    T  +    + IR + ++  +   
Sbjct: 210 CGSGGMFVQSEKFIEVHGG--RIGDISI-YGQESNHTTWKLAAMNLAIRGIAANLGQ--- 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   +  KDL    +  Y L+NPPF    W  D+   ++        R+  G+P + 
Sbjct: 264 ---ENADSFHKDLHPDLKADYILANPPFNSSDWGGDRLREDR--------RWVYGVPPVG 312

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H  +   L PNG   A  VL++  L + +  SGE EIR+ ++E D+++ IVA
Sbjct: 313 NANFAWVQHFIS--HLAPNG--VAGFVLANGSLSSNQ--SGEGEIRKNMVEADVVDCIVA 366

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----------ERRGKVQLINATDL 430
           LP  LF+ T I   LW +S  K            +R G++  I+A  L
Sbjct: 367 LPGQLFYSTQIPVSLWFVSRNKKNGKGLEGKPLRDRSGEILFIDARKL 414


>gi|307353814|ref|YP_003894865.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanoplanus petrolearius DSM 11571]
 gi|307157047|gb|ADN36427.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanoplanus petrolearius DSM 11571]
          Length = 500

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 44/310 (14%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ I++        ++   YE+ + +F  +  + A +F TP  VV     +L 
Sbjct: 131 LGEVVDLFTNIQMADHGDSKDILGRAYEYCLAKFAEQEGKLAGEFYTPACVVKTIVEVL- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   + +   H      +  +GQ+  P T 
Sbjct: 190 ---------QPCQGR-VYDPCCGSGGMFVQSAIFIEN---HRGNINNISVYGQDSNPTTW 236

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDA 311
            +    + IR +E+D    L K      T   DL    +  + ++NPPF    W  DK A
Sbjct: 237 KMAQMNLAIRGIEAD----LGKF--SADTFYNDLHPTLKADFIMANPPFNLSNWGADKLA 290

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            +         R+  G+P   + +  ++ H+     L P G  R  +VL++  L      
Sbjct: 291 DDP--------RWKYGIPPSGNANFAWMQHMI--YHLAPKG--RLGLVLANGSL--SSQS 336

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            GE EIR+ ++E DL+E IVA+P  LF+ T I   LW ++  K ++R+          L+
Sbjct: 337 GGEGEIRKNIVEADLVECIVAMPPQLFYTTQIPVSLWFINRDKKQKRK---------TLF 387

Query: 432 TSIRNEGKKR 441
              RN+G+ R
Sbjct: 388 IDARNKGEMR 397


>gi|291044252|ref|ZP_06569961.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
 gi|291011146|gb|EFE03142.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
 gi|317163870|gb|ADV07411.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 514

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 197/495 (39%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      + G A   E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|225873158|ref|YP_002754617.1| putative type I restriction-modification system, M subunit
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793577|gb|ACO33667.1| putative type I restriction-modification system, M subunit
           [Acidobacterium capsulatum ATCC 51196]
          Length = 539

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 134/307 (43%), Gaps = 37/307 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL +I K  S I   P T+       IYE+ +  F     +G  +F TP  +V L T ++
Sbjct: 140 LLSEILKMISEI---PATLDYDAFGRIYEYFLGEFARTEGQGGGEFYTPSAIVRLLTEVI 196

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P   R L DP CG+GG    +   VA+    H     L  HG E   ET
Sbjct: 197 ----------EPYHGRIL-DPACGSGGMFVSSARFVAE--HKHNPSAELSIHGVEKTDET 243

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +C   + +  LE   +   + N       +    TGK F + L+NPPF      + DA
Sbjct: 244 GRLCRMNLAVHGLEGTIKHGGNVNTYYDDPHAA---TGK-FDFVLANPPF------NVDA 293

Query: 312 VEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           V+KE     +G   RF  GLP++ + + L++    + L    N  GRA  V+++S     
Sbjct: 294 VDKERLKDAVGPNRRFPFGLPRVDNANYLWIQLFYSAL----NDKGRAGFVMANSA---S 346

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQLINA 427
            A S E EIRR L+E   ++ +VA+  ++F+   +   LW     K    R   V  ++A
Sbjct: 347 DARSSEQEIRRELIEAGAVDVMVAVGPNMFYTVTLPCTLWFFDRGKAATPRADTVLFLDA 406

Query: 428 TDLWTSI 434
             ++  I
Sbjct: 407 RHIYRQI 413


>gi|225076051|ref|ZP_03719250.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens
           NRL30031/H210]
 gi|224952611|gb|EEG33820.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens
           NRL30031/H210]
          Length = 871

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 212/483 (43%), Gaps = 63/483 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREKYLA--FGGS 65
            LA  IW++A  +    +  ++   IL F   + L   LE       + +   A     S
Sbjct: 5   QLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADELTES 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLST-------LGSTNTRNNLESYIASFSDNAKAIFEDF 118
           N +L + VK     ++ + E+  ST           + R  + ++  + +DN  A+F+  
Sbjct: 65  NGELVNHVK-RNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTAVFDGI 123

Query: 119 DFSSTIARLEKAGLLYKICKN--------FSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            F +  + L K G       N         + I +      D V+  IYE+LI  F +  
Sbjct: 124 -FKTLESGLSKLGDTAVSQTNAVKDLFVLIADIPMDGKQGYD-VLGFIYEYLISMFAANA 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++ D      K+   +  ++YDPT G+G  L +  + VA  
Sbjct: 182 GKKAGEFYTPHEVSLLMSEIIADH----LKDREEI--SIYDPTSGSGSLLINIGHSVA-- 233

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTG 289
             H K    +  + QEL+  T+ +    +++R +   P    ++N     TL  D    G
Sbjct: 234 -KHLKSADSIKYYAQELKENTYNLTRMNLVMRGIL--PSNIFTRN---ADTLEDDWPLEG 287

Query: 290 KRFHY--CLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           +  +    +SNPP+ + W  KDK+       +    RFG      +D    FL+H  +  
Sbjct: 288 EPLYLDAVVSNPPYSQPWNPKDKEG------DIRYKRFGVAPQAKAD--FAFLLH--DLF 337

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESE-IRRWLLENDLIEAIVALPTDLFFRTNIAT 405
            L P+G     IVL    LF G    GE E IR+ L+E + I+AI+ LP ++FF T I T
Sbjct: 338 HLKPDG--IMTIVLPHGVLFRG----GEEEKIRKNLIEYNHIDAIIGLPANIFFGTGIPT 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            + +L   + E  R  V +I+A+  +  +   GK   +   D +R +  +   RE  KFS
Sbjct: 392 IIIVL---RQERERNDVLMIDASKHFIKV---GKNNHLQASDIKRIVDCVTHRRELPKFS 445

Query: 466 RML 468
           R++
Sbjct: 446 RIV 448


>gi|121534614|ref|ZP_01666436.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
 gi|121306866|gb|EAX47786.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
          Length = 518

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 143/315 (45%), Gaps = 43/315 (13%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  RL+   L+  + K FS +   P  V   V  N+YE+ +  F     +   +F TP  
Sbjct: 123 TYTRLDNDTLI-ALLKIFSEV---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFYTPTS 178

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++           P   R L DP CG+GG    +   V +   H K P   + 
Sbjct: 179 LVKLIVEVI----------EPYQGRIL-DPACGSGGMFVQSARFVQN---HKKNPSSEIS 224

Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
            +GQE   ET  +C   + +  L  D        I+Q +T  +++     RF + ++NPP
Sbjct: 225 IYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCLNRFDFVMANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F      + D V+KE K  +  R+  GLP I + + +++    + L    N  GRA  V+
Sbjct: 277 F------NVDGVDKE-KIKDDPRYPFGLPTIDNANYIWIQEFYSAL----NDKGRAGFVM 325

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ++S      A   E EIR+ L+++ +++ ++A+  + F+   +   LW     K +  RG
Sbjct: 326 ANSA---SDARGSELEIRKKLIQDRVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQTERG 382

Query: 421 -KVQLINATDLWTSI 434
            KV  I+A +++  +
Sbjct: 383 DKVLFIDARNIYRQV 397


>gi|282918215|ref|ZP_06325956.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317912|gb|EFB48280.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 318

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 131/286 (45%), Gaps = 42/286 (14%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L          G   K
Sbjct: 2   EFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLR-------VGKEAK 46

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   
Sbjct: 47  VYRYF---GQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDAV 98

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L+      G 
Sbjct: 99  IANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD----DEGT 149

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T   IL  +K
Sbjct: 150 MAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CILVFKK 204

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             ++   V  I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 205 CRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTYKRKE 246


>gi|159904435|ref|YP_001548097.1| N-6 DNA methylase [Methanococcus maripaludis C6]
 gi|159885928|gb|ABX00865.1| N-6 DNA methylase [Methanococcus maripaludis C6]
          Length = 501

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 41/311 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +   +F TP  +V L   ++           P   R +YDP 
Sbjct: 153 ILGRVYEYFLGQFASAEGKKGGEFYTPDCIVKLLVEMI----------GPYKGR-VYDPC 201

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     +I  I + +GQE  P T  +    + IR +E+D      
Sbjct: 202 CGSGGMFVQSEKFVIEHSG--RINDISI-YGQESNPTTWKLANMNLAIRGIEAD------ 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+ G +   DL    +  + L+NPPF    W  +    +K        R+  G P   
Sbjct: 253 --IKFGDSFHNDLHPDLKADFILANPPFNISDWGGNLLTDDK--------RWKYGTPPTG 302

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ + L       G A  VL++  + +    S E EIR  ++   L++AIVA
Sbjct: 303 NANFAWVQHMIHHLSTT----GIAGFVLANGSMSSNT--SSEGEIRTNIINAGLVDAIVA 356

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP+ LF+ T I   LW +  R  + R G+   I+A ++   I    +K R + ++  ++I
Sbjct: 357 LPSQLFYNTQIPACLWFV-RRGKDVRNGETLFIDAREMGEMIS---RKNRSLTEEDIKKI 412

Query: 453 LDIYVSRENGK 463
             +Y S  NG+
Sbjct: 413 AGVYHSWRNGE 423


>gi|297625332|ref|YP_003687095.1| Type I restriction-modification system DNA methylase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921097|emb|CBL55644.1| Type I restriction-modification system DNA methylase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 522

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 197/496 (39%), Gaps = 72/496 (14%)

Query: 1   MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPT 51
           MTE T  +  A L   IW+ A DL G     DF   +L     R +   L       E  
Sbjct: 1   MTESTKESERAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYINKGEHA 60

Query: 52  RSAVREKYLAFGGSN--------IDLESFVKVAGYSFYNTSEYSLST--LGST--NTRNN 99
              V   Y     S+        +D + F  +    F N    +     L  T  N   N
Sbjct: 61  AGDVDFNYADLPDSDAAMALRETVDEKGFFILPSDLFENVRHDAPHNPNLNETLANAFAN 120

Query: 100 LESYIASFSDNA--KAIFEDFDFSS------TIARLEKAGLLYKICKNFSGIELHPDTVP 151
           +E+  A  S     K +F+D D +S       + R EK   L     +         T+ 
Sbjct: 121 IENSAAGTSSEGDLKGLFDDLDVNSNRLGNSVMQRNEKLVKLLDAVGDLPLGNFGEHTI- 179

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L+  + S   +   +F TP++V  L T + +             +  +YD
Sbjct: 180 -DLFGDAYEYLMTMYASSAGKSGGEFYTPQEVSELLTRITV--------VGKTHVNKVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L      +   G            GQE+   T+ +C   M +  +       
Sbjct: 231 PACGSGSLLLKFGQVLGQGGVRKGY------FGQEINLSTYNLCRINMFLHGINYS---- 280

Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL++   +  + F   +SNPP+   W  + +            RF P   L
Sbjct: 281 -DFDIALGDTLTEPKHWDEEPFEAIVSNPPYSIHWAGNDNPTLINDP-----RFSPAGVL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++
Sbjct: 335 APKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---ERKIRKYLIDNNFVD 387

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP DLFF T I T + +L   K  +R   V  ++ +  +    N+ K    ++D  
Sbjct: 388 TVIQLPPDLFFGTTIGTCIIVL---KKSKRDNSVLFVDGSAEFVRPGNKNK----LDDAN 440

Query: 449 RRQILDIYVSRENGKF 464
           R++ILD + +RE+  +
Sbjct: 441 RQKILDAFTAREDADY 456


>gi|220930107|ref|YP_002507016.1| type I restriction-modification system, M subunit [Clostridium
           cellulolyticum H10]
 gi|220000435|gb|ACL77036.1| type I restriction-modification system, M subunit [Clostridium
           cellulolyticum H10]
          Length = 525

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 44/322 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F +   + A +F TP+ V  + + ++     ++ +E       +YDP 
Sbjct: 170 VIGDAYEYLIGQFAAGAGKKAGEFYTPQTVSKIISEIV-----SIGQEEVAPFH-IYDPA 223

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +    V +    H        HGQEL   T+ +    +++  +E    R   
Sbjct: 224 MGSGSLMLNIRQFVKNPWKVHY-------HGQELNTTTYNLARMNLILHNVEQSQMR--- 273

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             ++ G TL +D  + +   F+  + NPP+   W  D    +K   +    R+G   PK 
Sbjct: 274 --LRNGDTLDEDWPSDEPYLFNAVVMNPPYSANWSAD----DKFLSDPRFERYGKLAPK- 326

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L    N  G   IVL    LF G   + E  IR+ LLE   I+A++
Sbjct: 327 SKADFSFLLHGFYHL----NENGTMGIVLPHGVLFRG---ASEGVIRKTLLEMGAIDAVI 379

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK--VQLINATDLWTSIRNEGKKRRIINDDQR 449
            LP ++F+ T+I T + I+     ++ RGK  V  I+A+  +   +N+   R+    +  
Sbjct: 380 GLPANIFYGTSIPTTVLIM-----KKNRGKRDVLFIDASKDFEKQKNQNNLRK----EDI 430

Query: 450 RQILDIYVSREN-GKFSRMLDY 470
           ++I+D Y  RE+  K++ + DY
Sbjct: 431 QKIVDTYKKRESIHKYAHLADY 452


>gi|21229943|ref|NP_635860.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766819|ref|YP_241581.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111454|gb|AAM39784.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572151|gb|AAY47561.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 538

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 174/390 (44%), Gaps = 68/390 (17%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFS----GIELHPDTVPDRVMS 156
           SF    + +F + + +S     +K G  Y     K+C   S    G+ L   T     + 
Sbjct: 133 SFESEFQGLFSEINLAS-----DKLGRKYDDRNAKLCSIISEIARGMALSAKT---DSLG 184

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESP-GMIRTLYDPTC 214
           + YE+LI +F +   + A +F TP+++ ++ +A++ LD  +   K  P G + +++D  C
Sbjct: 185 DAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEP--KTGPRGKLDSVFDFAC 242

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +  N + + G       I   +GQE    T+ +    ML+  +     +D   
Sbjct: 243 GSGSLLLNIRNRMTNSGG-----SIGKIYGQEYNVTTYNLARMNMLLHGV-----KDTEF 292

Query: 275 NIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKD----KDAVEKEHKNGELG 322
            I  G TL  D             RF   ++NPPF  +WE      +DA  K H      
Sbjct: 293 EIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQDARFKNH------ 346

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   S     FL+H    L+      G  AI+L    LF G     E++IRR LL
Sbjct: 347 ----GVAPKSAADFAFLLHGLQYLK----DDGVMAIILPHGVLFRG---GKEADIRRKLL 395

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA   +     +GK++ 
Sbjct: 396 DDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAGHFA----KGKRQN 448

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYR 471
            + D+  ++I++ Y +R +  ++SR +  +
Sbjct: 449 QLTDEHIQRIVNTYQNRNKQDRYSRCVSMK 478


>gi|116511952|ref|YP_809168.1| Type I restriction-modification system methyltransferase subunit
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107606|gb|ABJ72746.1| Type I restriction-modification system methyltransferase subunit
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 462

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 165/365 (45%), Gaps = 45/365 (12%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D+   +F D +   T    +  E+A  L  I    +      D   D V+ ++YE+LI +
Sbjct: 47  DDFANVFSDVNLGDTRLGTSTNERAKALNDIVLMINDFAFKDDNGHD-VLGDVYEYLIGQ 105

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP +V  +   ++     A    S    R +YDP  G+G  L     
Sbjct: 106 FAANAGKKGGEFYTPHEVSQILAKIVT----ADAHRSQEQFR-VYDPAMGSGSLLLTVQK 160

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +        +       GQEL   T+ +    +++  +     R++  N+++  TL  D
Sbjct: 161 ELPGGEREGSVEFF----GQELNTTTYNLARMNLMMHDVNY---RNM--NLRRADTLDAD 211

Query: 286 --------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
                       ++F   ++NPP+ +KWE      EK+       RF G G+   S    
Sbjct: 212 WPYDEKEGTQIPRKFDAVVANPPYSQKWETKTIDREKDV------RFKGYGVAPASKADY 265

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L+      G  AIVL    LF G   + E +IR+ +++N+L++A++ LP +
Sbjct: 266 AFVLHGLYHLD----NKGTMAIVLPHGVLFRG---ASEGKIRKNIIDNNLLDAVIGLPAN 318

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I T + +    +  ++R  V  I+A++ +   +N+ K    +++D  R I++ Y
Sbjct: 319 LFYGTSIPTCILVFKGIEARQKR-DVLFIDASNDFVKGKNQNK----LSEDNLRTIIETY 373

Query: 457 VSREN 461
            SR++
Sbjct: 374 TSRKD 378


>gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
          Length = 610

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 42/321 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D  PD  +   YE+L+R+F     + A +F TP +V  L   +L        +  PG   
Sbjct: 258 DVQPD-FLGRAYEYLLRKFAEGSGQSAGEFFTPTEVGFLMAHIL--------RPKPG--E 306

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T +D  CG+ G L        +     ++P  L   GQEL+ E++AV     +I      
Sbjct: 307 TCHDYACGSAGLLIKLQLVARELDPTSRVP--LKLSGQELQAESYAVAQMNAIIH----- 359

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              D+   + +G T+    F       ++    ++NP + + +  D  A    H   +  
Sbjct: 360 ---DMEVELARGDTMINPKFRNADGSIRQHDIVVANPMWNQSFAPDIFA----HDPFDRF 412

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRR 379
           R   G+     G   +L H    +    N  GRAA+VL +  +  G     E +   IR+
Sbjct: 413 RTAGGITS-GKGDWAWLQHTLACM----NDHGRAAVVLDTGAVTRGSGSKNEDKERTIRK 467

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           W +E DLI+ ++ LP +LF+ T  A  + +L+ RK   R+GK+ L+NA+  ++    +G+
Sbjct: 468 WFVEQDLIDGVILLPENLFYNTTAAGVIVVLNKRKPAARKGKIVLLNASRHFS----KGR 523

Query: 440 KRRIINDDQRRQILDIYVSRE 460
            +  + ++  R +  +Y+  E
Sbjct: 524 PKNYLPEEDLRPLAAMYLKGE 544


>gi|182679587|ref|YP_001833733.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635470|gb|ACB96244.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 814

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 48/320 (15%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIR 207
           T  D ++ + YE+L+R F +E  +    F TP +V   +A A+ +         +    +
Sbjct: 134 TEGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKAIGMG-------SARSAAQ 186

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+YDPTCG+G  L  A         H + P  L  +GQE +  T A+    M++    + 
Sbjct: 187 TIYDPTCGSGSLLLKA---------HDEAPFDLTIYGQEKDVATRALAKMNMVLHDCPT- 236

Query: 268 PRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL 321
                   I + +TLS   F     T K F + ++NPPF  K W    D  E   K    
Sbjct: 237 ------AEIWRDNTLSAPHFVNNDGTLKTFDFVVANPPFSDKAWGTGLDPAEDRFK---- 286

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RF  G+P   +G   +L+H+   L+      G+ AI++    LF G A +G   IR  +
Sbjct: 287 -RFEDGVPPAKNGDFAYLLHVVASLK----STGKGAIIMPHGVLFRGNAEAG---IREKI 338

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +   +I+ I+ LP +LF+ T I   + +L       R G + +I+A+  +    N+ + R
Sbjct: 339 IRKGIIKGIIGLPANLFYGTGIPACIVVLDKENAHARTG-IFMIDASKGFVKDGNKNRLR 397

Query: 442 -----RIINDDQRRQILDIY 456
                +I++   ++ I+D Y
Sbjct: 398 AQDIHKIVDTFTKQLIIDRY 417


>gi|254360726|ref|ZP_04976874.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153091296|gb|EDN73270.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 604

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 130/279 (46%), Gaps = 39/279 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 255 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSGR-IYDPA 303

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+GGF   A   + A  G+ + I      +GQE    T  + V  M IR +  D     
Sbjct: 304 MGSGGFFVQADRFIQAHAGNRNAISV----YGQESNSTTRKLAVMNMAIRGIPFD----- 354

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKI 331
               +   TL   L   K+    ++NPPF +K W  +  A +         R+  G P  
Sbjct: 355 -FGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESLANDP--------RWAYGTPPQ 405

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+     L P G  + A++L++  +      SGE +IR+ +++ DL+EA++
Sbjct: 406 GNANFAWLQHMI--YHLSPKG--KMALLLANGSM--SSQTSGEGDIRKNIVQADLVEAMI 459

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           ALP  LF  T I   +WI++  K + R+G+V  INAT +
Sbjct: 460 ALPNQLFTNTQIPACIWIIN--KAKARKGEVLFINATQI 496


>gi|315453997|ref|YP_004074267.1| type I restriction-modification system [Helicobacter felis ATCC
           49179]
 gi|315133049|emb|CBY83677.1| type I restriction-modification system [Helicobacter felis ATCC
           49179]
          Length = 557

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 41/310 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  + YE L+  + S+  +   +F TP++V  L   L+L             I  +YDP 
Sbjct: 216 VFGDAYEFLMGMYASDAGKSGGEFFTPQEVSELLAKLVL--------HGQKDINKVYDPC 267

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L   +      G  +         GQE+   T+ +C A M +  +E +      
Sbjct: 268 CGSGSLL---LKFAKILGKENIKQGFF---GQEINLTTYNLCRANMFLHNIEYN-----Q 316

Query: 274 KNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL +  L   + F   +SNPP+  KW  D D +          RF P   L  
Sbjct: 317 FDIAHGDTLLNPQLEDFEPFDAIVSNPPYSTKWVGDDDPLLINDP-----RFAPAGVLAP 371

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                + F MH+ + L +     G  AIV     L+ G A   E++IR+ L++ + ++ +
Sbjct: 372 CKYADLAFTMHMLSWLSVK----GTCAIVQFPGVLYRGGA---EAKIRQHLIDRNFVDGV 424

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           +AL  DLFF TNI T + IL   K ++R   V  ++A+  +  +R + K +  +      
Sbjct: 425 IALAPDLFFGTNIPTCVLILRKNKPDDR---VLFVDASAEF--VRQDTKNK--LAPSNIA 477

Query: 451 QILDIYVSRE 460
           +IL +Y SRE
Sbjct: 478 KILKVYESRE 487


>gi|253569550|ref|ZP_04846960.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841569|gb|EES69650.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 512

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 181/442 (40%), Gaps = 63/442 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           S   L +F+W  A  L G      + + I P    +R+    +       E Y+  GG  
Sbjct: 16  SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQF----EGYVCEGGIE 71

Query: 65  -SNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA----------- 111
            +N   +  V ++   + +         +G    +  +E++IA    N            
Sbjct: 72  YANAQAQELVIRIPDGAHWRDVRECTENVG----QRLVEAFIAIEQANPGEHADGRVIGG 127

Query: 112 -KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            + IF   D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  + 
Sbjct: 128 LEGIFGPKDGWTNKAKMPDH-IITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDA 186

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              A++F T R VV L   +L        +  PG   ++YDPTCG+GG L   ++ +   
Sbjct: 187 GNTAQEFYTNRTVVDLMAEIL--------QPRPG--ESIYDPTCGSGGMLVKCLDFLRKK 236

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G   +   +    GQE+   T A+    + +  +E     D S  I +  TL+   F   
Sbjct: 237 GEPWQGVKVF---GQEINALTSAIARMNLYLNGVE-----DFS--IVREDTLAHPAFVDG 286

Query: 290 ---KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              ++F   L+NPP+  K W ++         N + GR   G P        F  H+   
Sbjct: 287 SRLRKFDIVLANPPYSIKTWNREA------FMNDKWGRNFLGTPPQGRADYAFFQHILAS 340

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++   +  GR AI+     LF       E  +R  L+++D++E ++ L  +LF+ + +  
Sbjct: 341 MD---DKTGRCAILFPHGVLFRDE----EQSLREKLIKSDVVECVIGLGANLFYNSPMEA 393

Query: 406 YLWILSNRKTEERRGKVQLINA 427
            + I +N+K    + K+  INA
Sbjct: 394 CILICNNQKRSTLKNKIIFINA 415


>gi|296100300|ref|YP_003620470.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154]
 gi|295831617|gb|ADG39501.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154]
          Length = 530

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 162/385 (42%), Gaps = 59/385 (15%)

Query: 94  TNTRNNLESYIASFSDNAKA----IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE 144
           TN  + L  +       AKA    IF+D D +S+  RL      +   L         IE
Sbjct: 101 TNVADALVHFNQGIQQGAKATFEGIFDDMDLTSS--RLGSNTQTRTKTLMDWISLIDQIE 158

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L  D     V+ ++YE+LI  F +     A +F TP  V  +   +L     A  ++ P 
Sbjct: 159 LDEDA---DVLGDLYEYLIGMFAANSGAKAGEFYTPHQVSDIMARILT----AGREDMP- 210

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              +LYDP  G+G  L    +++ + G    I      +GQE+   T+ +    +++  +
Sbjct: 211 -TYSLYDPAMGSGSLLLTTASYMQNDGVRGAIKY----YGQEVITTTYNLGRINLMMHGV 265

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           E +       +I    TLS D   G        + F   ++NPP+  KW+ D    +   
Sbjct: 266 EYN-----DIHIHNADTLSSDWPDGVQSGVDSPRMFDAVMANPPYSLKWDNDNREDDP-- 318

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 RF  G+   S     FL H    L+      GR AIVL    LF G A   E  
Sbjct: 319 ------RFKSGIAPKSKADFAFLQHGLYHLK----QDGRMAIVLPHGVLFRGAA---EGR 365

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ LLEN  I A++ LP  +F  T I T + IL   +T +    V  I+A+  +   +N
Sbjct: 366 IRQALLENRNISAVIGLPEKIFTNTGIPTIIMILEKNRTTD---DVLFIDASKGFEKQKN 422

Query: 437 EGKKRRIINDDQRRQILDIYVSREN 461
             K R+    +    I++ ++ RE+
Sbjct: 423 NNKLRQ----EDVDLIVETFLKRED 443


>gi|240013720|ref|ZP_04720633.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI18]
 gi|240080302|ref|ZP_04724845.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|240117541|ref|ZP_04731603.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID1]
 gi|240120790|ref|ZP_04733752.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID24-1]
 gi|240123095|ref|ZP_04736051.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID332]
          Length = 513

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 196/495 (39%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 1   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 51

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 52  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 111

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 112 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 171

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 172 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 220

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 221 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 273

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 274 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 323

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      +    G  E +IR++L+E 
Sbjct: 324 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFY---CGGAEQKIRQYLVEG 376

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 377 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 429

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 430 TEEHIAEIVKLFADK 444


>gi|315506715|ref|YP_004085602.1| type i restriction-modification system, m subunit [Micromonospora
           sp. L5]
 gi|315413334|gb|ADU11451.1| type I restriction-modification system, M subunit [Micromonospora
           sp. L5]
          Length = 522

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 163/370 (44%), Gaps = 50/370 (13%)

Query: 109 DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
           D+ K +F+D D +S     T+AR  +   L K+      ++L   +        + YE+L
Sbjct: 132 DDLKGLFDDLDVNSGKLGNTVARRNEK--LVKLLNAVGDLKLGDFNNHAIDAFGDAYEYL 189

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   +F TP++V  L   + +     + K+S   +  +YDP CG+G  L  
Sbjct: 190 MTMYASSAGKSGGEFFTPQEVSELLARITV-----VGKKS---VNKVYDPACGSGSLLLQ 241

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +                GQE+   T+ +    M +  +  +       NI  G TL
Sbjct: 242 FAKVLGQKNVRQGF------FGQEINLTTYNLARINMFLHDIGYE-----QFNIAHGDTL 290

Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
                +  + F   +SNPP+  KW  D + +          RF P   L   S   + F 
Sbjct: 291 LDPAHWDEEPFEAIVSNPPYSTKWPGDSNPLLINDP-----RFSPAGVLAPKSKADLAFT 345

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+   L +     G AAIV     L+ G A   E +IR++L++N+ ++ ++ LP DLFF
Sbjct: 346 MHMLRWLAV----NGTAAIVEFPGVLYRGGA---EQKIRKYLVDNNYVDTVIQLPPDLFF 398

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              IAT + +L   K +     V  I+A+  +  + N+ K    +  + R+ ILD +V+R
Sbjct: 399 GVTIATCIIVLKKSKNDN---NVLFIDASAEFKRVGNKNK----LLPEHRKMILDAFVAR 451

Query: 460 EN-GKFSRML 468
            +   F+R++
Sbjct: 452 RSVDHFARLV 461


>gi|313674352|ref|YP_004052348.1| site-specific DNA-methyltransferase (adenine-specific) [Marivirga
           tractuosa DSM 4126]
 gi|312941050|gb|ADR20240.1| Site-specific DNA-methyltransferase (adenine-specific) [Marivirga
           tractuosa DSM 4126]
          Length = 504

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 29/266 (10%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +  S+   GA  + TPR ++    A +          +P  +++++DP+
Sbjct: 138 VKGDIYEGLLEKNASDTKSGAGQYFTPRSLIQAMVACV----------APEPMKSIHDPS 187

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRL-ESDP 268
           CGTGGF   A +++      +K     + +    G E+   T  +C+  M +  + E D 
Sbjct: 188 CGTGGFFLAAYDYIIKNHELNKEQKAFLKNSTFSGNEIVAGTRRLCLMNMFLHNIGEIDG 247

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              +S N      L  D   G R  Y L+NPPFGKK        E E +  EL       
Sbjct: 248 ETFISPN----DALIAD--EGNRVDYVLANPPFGKKSSMTITNEEGEQEKQELSYNRQDF 301

Query: 329 PKISDGSML-FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              S    L FL H+ + L++     G AA+VL  + LF G  GSGE+ +R+ L++   +
Sbjct: 302 WATSSNKQLNFLQHIRSLLKI----NGEAAVVLPDNVLFEG--GSGET-VRKELMKTTEL 354

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR 413
             I+ LPT +F+   +   +    N+
Sbjct: 355 HTILRLPTGIFYAHGVKANVLFFDNK 380


>gi|300114420|ref|YP_003760995.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299540357|gb|ADJ28674.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 499

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 35/308 (11%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+    +++    LY++ K   G++     +   +  +IYE L+ +   +   GA  + T
Sbjct: 93  FTKAQNKIQDPAKLYRLIKMVDGVQW--VMIGADIKGDIYEGLLEKNAEDTKSGAGQYFT 150

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR ++      +        +  PG  +T+ DP CGTGGF   A + ++D   H+ +   
Sbjct: 151 PRALIKAMVECV--------RPEPG--KTIADPACGTGGFFLAAYDFLSDP-KHYSLDKA 199

Query: 240 LVP-------HGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                     HG E+   T  +C+  M +  + E D    +S N    +       +G+ 
Sbjct: 200 QKAFLKHQTFHGNEIVANTRRLCLMNMFLHNIGEIDGESAISPNDALVAP------SGQS 253

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELPP 350
           + Y L+NPPFGKK        E E ++ +L           S+  + F+ H+   L+   
Sbjct: 254 YDYVLANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWATTSNKQLNFVQHIRALLK--- 310

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA+V+  + LF G  G+GE+ IRR LLEN  +  I+ LPT +F+   +   +   
Sbjct: 311 -STGKAAVVVPDNVLFEG--GAGET-IRRKLLENTDLHTILRLPTGIFYAKGVKANVLFF 366

Query: 411 SNRKTEER 418
            NR+   R
Sbjct: 367 DNREASPR 374


>gi|167761133|ref|ZP_02433260.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
 gi|167661252|gb|EDS05382.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
          Length = 890

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 52/311 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R+F +E  +    F TP +V  +   ++                T+ D
Sbjct: 152 DDIIGDAYEYLMRKFATESGKSKGQFYTPAEVSRILANVVG------ISRCTDSSATVCD 205

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A++           P  ++ +GQE E  T  +     ++ R     + +
Sbjct: 206 PACGSGSLLIRAIDAA---------PIPIMGYGQEKESTTAGLAKMNAVLHR-----KAE 251

Query: 272 LSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
           ++  I+ G+T S   +  K       RF Y ++NPPF  K W   +D ++      E GR
Sbjct: 252 IT--IKSGNTFSNPQYLDKSDNSILERFDYIVANPPFSMKNW---RDGLK------EYGR 300

Query: 324 F-GPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F G G  P   +G   +LMH+   L+      G+AA++L    LF G A   E+ IR  +
Sbjct: 301 FEGYGDTPPEKNGDYAWLMHILKTLK----SNGKAAVILPHGVLFRGNA---EATIREAI 353

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           ++   I+ I++LP +LF+ T IA  + ++       R+G + +I+A+  +     +G K 
Sbjct: 354 IKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQG-IFMIDASRGYVK---DGNKN 409

Query: 442 RIINDDQRRQI 452
           R+   D  R I
Sbjct: 410 RLRERDIYRII 420


>gi|294790580|ref|ZP_06755738.1| type I restriction-modification system, M subunit [Scardovia
           inopinata F0304]
 gi|294458477|gb|EFG26830.1| type I restriction-modification system, M subunit [Scardovia
           inopinata F0304]
          Length = 566

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 204/494 (41%), Gaps = 90/494 (18%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEP-------- 50
           E    A +L++ +W  A DL G    ++F   IL F   R    R E  LE         
Sbjct: 12  EKNNQAGNLSSQLWAMANDLRGKMDASEFRDYILGFIFYRYLSDRQEHYLESSGTVDIEE 71

Query: 51  --------TRSAVREKYLAFGGSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTR-NN 99
                   TR + RE      G  +  E      GY+    +T +  L  + +   R  +
Sbjct: 72  GESLNDAYTRCSKRE------GIELYREDLSNELGYAIDPADTWQSLLDKIQNQRIRPED 125

Query: 100 LESYIASFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELH 146
            ++    F  NA          + +F+D + S++    +   +A  L  I +  + ++  
Sbjct: 126 FQNIFDHFKRNALLNPNSEKDFRDVFDDINLSNSSLGTSTAARAKALAAIVEKINEVDFL 185

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +   D ++ ++YE+LI +F     + A +F TP +V  +   L+         ES  +I
Sbjct: 186 DEGGRD-ILGDVYEYLIEKFAGSSGKKAGEFYTPHEVSKVLAKLVTYAAPDASDESKDVI 244

Query: 207 R------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET--------- 251
                  T+YDPT G+G  L      +       ++      +GQEL   T         
Sbjct: 245 NNEDSTFTIYDPTMGSGSLLLTVQKELTGLDHRSRVHF----YGQELNRTTFNLARMNLL 300

Query: 252 -HAVCVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            H V    M +R    LESD    +     QG  ++  LF    F   ++NPP+ +KW+ 
Sbjct: 301 MHGVGYQSMFLRNADTLESDWPDGVDA---QG--INHPLF----FDAVVANPPYSQKWDN 351

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           +   + K+ +  E G+  P     S     F+ H    ++L     GR AIVL    LF 
Sbjct: 352 NATKM-KDPRFKEYGKLAPK----SAADFAFVEHCLYHMKLT----GRMAIVLPHGVLFR 402

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G A   E  IR+ LLE + ++A++ LP++LF+ T IAT + +    KT +    V  I+A
Sbjct: 403 GGA---EGIIRKALLEKNYLDAVIGLPSNLFYSTGIATVVLVFRKDKTTD---NVLFIDA 456

Query: 428 TDLWTSIRNEGKKR 441
           +  +   +N+   R
Sbjct: 457 SQHFEKRKNQNTLR 470


>gi|300087356|ref|YP_003757878.1| type I restriction-modification system subunit M [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527089|gb|ADJ25557.1| type I restriction-modification system, M subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 523

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 122/502 (24%), Positives = 200/502 (39%), Gaps = 87/502 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVRE-KYLA 61
           A+L   IW+ A D+ G     DF + +L     R +   L      E  RS  ++  Y  
Sbjct: 13  AALHRTIWQIANDMRGSVDGWDFKQYVLGMLFYRFISENLTSYLNREERRSGNQDFDYTR 72

Query: 62  FGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASF------------- 107
                 +      V    FY   SE  ++  G      NL   +A+              
Sbjct: 73  LPDEQAEFGRADTVKEKGFYILPSELFVNVCGKARLDANLNETLATVFRNIENSAKGADS 132

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVM---SNIYEHLI 163
            D+ K +F+D D +S+           K+ +    I EL      D  +    + YE L+
Sbjct: 133 EDDLKGLFDDLDVNSSKLGNTVEKRNQKLTRLIEAIGELRLGNYSDNTIDAFGDAYEFLM 192

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   L               +  +YDP CG+G  L   
Sbjct: 193 TMYASNAGKSGGEFFTPQEVSELLARLA--------TVGKKEVNKVYDPACGSGSLLL-- 242

Query: 224 MNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKN- 275
                      K   IL          GQE+   T+ +C   M +         D++ N 
Sbjct: 243 -----------KFAKILGKENVRIGFFGQEINITTYNLCRINMFLH--------DINYNH 283

Query: 276 --IQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
             I  G TL+    +  + F   +SNPP+  KWE D + +          RF P   L  
Sbjct: 284 FEIAHGDTLTDPKHWDDEPFDAIVSNPPYSTKWEGDSNPLLINDP-----RFSPAGVLAP 338

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L       G AAIV     L+ G A   E +IR++L++N+ I+ +
Sbjct: 339 KSKADLAFTMHMLSWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNYIDTV 391

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF   IAT + +L   K  ++  K   I+A+  +    N+ K    + +D   
Sbjct: 392 IQLPPDLFFGVTIATCIIVL---KKSKKDNKTLFIDASTEFVRGGNKNK----LTEDNLA 444

Query: 451 QILDIYVSRENGK-FSRMLDYR 471
           +IL+ + +R + + F++++D +
Sbjct: 445 KILEAFTNRTDVEYFAKLVDNK 466


>gi|189467605|ref|ZP_03016390.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM
           17393]
 gi|189435869|gb|EDV04854.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 185/451 (41%), Gaps = 60/451 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IWK A+ L G+   +++  V+L    L+ +    E    A+ ++     G   + +    
Sbjct: 15  IWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFEAKYQALIDE-----GDGFEEDKDEY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE 128
            +   F+   E   S +        + + I    DNA  + E  +           AR E
Sbjct: 70  TSENIFFVPQEARWSMIAKAAHAPEIGTVI----DNAMRLIEKENTRLKGILPKNFARPE 125

Query: 129 -KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L  +   F+ I++        ++   YE+ + +F     + A +F TP  +V   
Sbjct: 126 LDKRRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKLAGEFYTPACIVRTL 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L           P   R +YDP CG+GG    +   +     H      +   GQ+ 
Sbjct: 186 VEVL----------QPYSGR-VYDPACGSGGMFVQSAKFIE---RHQGNINNISVFGQDS 231

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE 306
            P T  +    + IR +E+D    L K      T   D     +  Y L+NPPF    W 
Sbjct: 232 NPTTWKMAQMNLAIRGIEAD----LGKF--NADTFFDDQHPTLKADYILANPPFNLSDWG 285

Query: 307 KDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            DK  D V          R+  G+P   + +  +L H+ +   L P G  R  +VL++  
Sbjct: 286 VDKLQDDV----------RWKFGIPPAGNANFAWLQHMIH--HLSPKG--RIGMVLANGS 331

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L       GE +IR  +++ DLIE IVALP+ LF+ T I   LW L+  K  ++ GK+  
Sbjct: 332 L--SSQSGGEGKIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRAK--KQTGKILF 387

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++A ++ T +    +K R ++D +  +  DI
Sbjct: 388 VDARNMGTMVT---RKLRELSDSEEGEKGDI 415


>gi|323700559|ref|ZP_08112471.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. ND132]
 gi|323460491|gb|EGB16356.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 540

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 169/377 (44%), Gaps = 60/377 (15%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTVPDR 153
           ES+ ++FS     +F + +  S     EK G  Y     K+C   + I   L   T    
Sbjct: 132 ESFESTFS----GLFSEINLGS-----EKLGKTYQNRNDKLCTIITKIADGLADFTTDSD 182

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESP-GMIRTLYD 211
            + + YE+LI +F +   + A +F TP+ +  + +A++ LD  D   K  P   + ++ D
Sbjct: 183 TLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDGQDP--KTGPRKKLASVMD 240

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + + + G       + + +GQE    T+ +C   ML+  +     +D
Sbjct: 241 FACGSGSLLLNVRHKMVNAGG-----SVGMIYGQEKNITTYNLCRMNMLLHGV-----KD 290

Query: 272 LSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL+ D    +         F   ++NPPF  +WE ++         GE  R
Sbjct: 291 SEFEIFHGDTLTNDWDKLREQNPAKKPTFDAVVANPPFSYRWEPNEAL-------GEDMR 343

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF G     E+ IRR LL
Sbjct: 344 FKNYGLAPKSAADFAFLLHGFHYLK----DEGVMAIILPHGVLFRG---GKEAAIRRKLL 396

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+  I+ ++ LP +LF+ T I   + +L   K  +    V +INA + +     +GK++ 
Sbjct: 397 EDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLIINAAEHF----EKGKRQN 449

Query: 443 IINDDQRRQILDIYVSR 459
            +N +   +I+D Y  R
Sbjct: 450 YLNAEHIDKIIDTYQQR 466


>gi|289423461|ref|ZP_06425263.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156095|gb|EFD04758.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 535

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 111/490 (22%), Positives = 208/490 (42%), Gaps = 70/490 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---------ECALEPTRSAVREKYL 60
           S+ + +W  A +L G+   ++F   IL F   R L         E  +  +   +    +
Sbjct: 7   SITSKLWAMANELRGNMDASEFKNYILAFMFYRYLSEHQENYMVEYGIIDSEDGMSNNEV 66

Query: 61  AFGGSNIDLESFVK-VA---GYSFY--NTSEYSLSTLGSTN-TRNNLESYIASFSDNAK- 112
               S  DL++F+K +A   GY+ Y  +T E   + +       ++ +  + +F++NA+ 
Sbjct: 67  YKRDSAGDLDTFIKDIADELGYAIYPDDTWESLCNKIDEGKIVPSDYQKLLDNFNNNARI 126

Query: 113 ---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                     +F D +   +    +   +A  L  I K    +E   +   D ++  IYE
Sbjct: 127 NERAEEDFSGVFNDINLGDSKLGASATARARSLNNIVKLVDEVEYKGEDGKD-ILGEIYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F +   +   +F TP  V  +   ++        + +      LYDPT G+G  L
Sbjct: 186 YLIGQFAASAGKKGGEFYTPHQVSQILAKIV-----TTGRVASKKTFNLYDPTMGSGSLL 240

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               + +        +      +GQEL   T+ +    +++  +E    +++S  ++ G 
Sbjct: 241 LTVRDELPGGDRVGAMDF----YGQELNTTTYNLARMNLMMHGVE---YKNMS--LKNGD 291

Query: 281 TLSKDL---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           TL +D             K F   ++NPP+  KW+ ++  ++    NG  G+  P     
Sbjct: 292 TLEEDWPIDTDKNGKMEPKWFDAVVANPPYSAKWDNNERKIKDPRFNG-YGKLAPA---- 346

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAI 390
           S     F++H    L+      G  AIVL    LF G A   E  IR+ L+E D  ++A+
Sbjct: 347 SKADFAFILHSVYHLK----EDGTMAIVLPHGVLFRGAA---EGVIRKTLIEKDNYLDAV 399

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+I T + +    +T      V  I+A+  +     +GK +  + D+   
Sbjct: 400 IGLPANLFYGTSIPTTILVFKKDRTARGVSDVLFIDASSDFV----KGKNQNTLTDEFID 455

Query: 451 QILDIYVSRE 460
           +I+  Y  R+
Sbjct: 456 KIVSTYRYRK 465


>gi|268596452|ref|ZP_06130619.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|268603244|ref|ZP_06137411.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID1]
 gi|268681724|ref|ZP_06148586.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID332]
 gi|268550240|gb|EEZ45259.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|268587375|gb|EEZ52051.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID1]
 gi|268622008|gb|EEZ54408.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID332]
          Length = 514

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 196/495 (39%), Gaps = 87/495 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +        S     Y+
Sbjct: 2   MTEMQ-QRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYM 52

Query: 61  AFGGSNIDLESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN------- 99
             G S+ID  +              VKV GY  Y    + +++     N   N       
Sbjct: 53  QAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIF 112

Query: 100 --LESYIASF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHP 147
             +ES  + +      K +F+DFD       ST+A   K  A +L  + + +F   E H 
Sbjct: 113 TAIESSASGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHR 172

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+LI  + +   +   +F TP+ V  L   L +   + + K       
Sbjct: 173 IDL----FGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK------- 221

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A          H I       GQE+   T+ +    M +  +  +
Sbjct: 222 -IYDPACGSGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYN 274

Query: 268 PRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+ G TL+   L   K F   +SNPP+   W    D            RF P
Sbjct: 275 KF-----HIELGDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAP 324

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H  N L    +G GRAAIV      +    G  E +IR++L+E 
Sbjct: 325 AGVLAPKSKADFAFILHALNYL----SGRGRAAIVSFPGIFY---CGGAEQKIRQYLVEG 377

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +E ++AL  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++
Sbjct: 378 NYVETVIALAPNLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVL 430

Query: 445 NDDQRRQILDIYVSR 459
            ++   +I+ ++  +
Sbjct: 431 TEEHIAEIVKLFADK 445


>gi|94272596|ref|ZP_01292153.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
 gi|93450073|gb|EAT01432.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
          Length = 480

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 141/324 (43%), Gaps = 40/324 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ R  SEV  GA  + TPR V+      +          +P +  ++ DP 
Sbjct: 125 VKGEIYEGLLERNASEVKSGAGQYFTPRPVIETIVKCV----------NPRIGESVCDPA 174

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +H+ +     +    L      G ++  E   +C   + +  L +    
Sbjct: 175 CGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHGLGNG--- 231

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK------WEKDKDAVEKEHKNGELGRF 324
                ++Q   L+ D   G RF+  L+NPPFGKK       E      E+EH   E  +F
Sbjct: 232 --GSPVEQRDALAGD--NGHRFNVVLTNPPFGKKSSYKVVGEDGAVTSEREHYEREDFKF 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN-GRAGSGESEIRRWLLE 383
                  S+    FL H+   LE      GRA +VL  + LF  GRAG G   IR+ LLE
Sbjct: 288 -----TTSNKQFNFLQHIMTILE----AHGRAGVVLPDNVLFEAGRAGEG---IRKRLLE 335

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
                 ++ LPT +++   +   + +  +++   R  + + +   DL T+I    K +R+
Sbjct: 336 GFNFHTLLRLPTGIWYSPGVKANV-LFFDKRPASREVQTRELWVYDLRTNIHKTLKTKRL 394

Query: 444 INDDQRRQILDIYVSRENGKFSRM 467
            + D    I   +  +E  +F R 
Sbjct: 395 THADFDDFIHCYHQRKETERFRRF 418


>gi|253576957|ref|ZP_04854281.1| type I restriction-modification system [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843688|gb|EES71712.1| type I restriction-modification system [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 885

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 65/404 (16%)

Query: 88  LSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-- 143
           L+ +G+ N    ++  IA  ++  N + + ++  F+    +L K   +        GI  
Sbjct: 74  LALIGNKNIGEEMDKIIAKLAEANNLRGVIDNAHFNDE-DKLGKGKEMVDKLSELLGIFR 132

Query: 144 ELHPD-----TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           +L PD        D ++ + YE+L+R F +E  +    F TP +V  +   ++       
Sbjct: 133 DLMPDFSRHSADGDDIIGDAYEYLMRNFATESGKSKGQFYTPSEVSRILAKVVG------ 186

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            + +     TLYDP CG+G  L  A             P  +  +GQE E  T  +    
Sbjct: 187 IEHAKAGDTTLYDPACGSGSLLIRAAEAA---------PVDVAIYGQEKEGTTAGLARMN 237

Query: 259 MLIRRLESDPRRDLSKNIQQG-STLSKDLFTG-------KRFHYCLSNPPFG-KKWEKDK 309
           +++    +         I+ G ST S   F         ++F + ++NPPF  K W    
Sbjct: 238 LVLHNRAT-------AEIKGGYSTFSDPQFKNPNDDGALRQFDFVVANPPFSDKNWT--- 287

Query: 310 DAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                 H   E GRF G G  P   +G   +L+H+   L+      G+AA++L    LF 
Sbjct: 288 ------HGLKEYGRFDGYGDRPPRKNGDFAWLLHVIKSLKR----NGKAAVILPHGVLFR 337

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G A   E+ IR+ L++  LI+ I+ LP +LF+ T I   + ++     +ER G + +I+A
Sbjct: 338 GNA---EATIRQSLIDKGLIKGIIGLPANLFYGTGIPACVIVIDKENADERDG-IFMIDA 393

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDY 470
           +        +G K R+   D  + I  ++  R E   +SR + Y
Sbjct: 394 S---RDFIKDGNKNRLREQDVYK-ITTVFNQRIELPNYSRFVPY 433


>gi|238760352|ref|ZP_04621493.1| Restriction-modification system, modification (Methylase) subunit
           [Yersinia aldovae ATCC 35236]
 gi|238701412|gb|EEP93988.1| Restriction-modification system, modification (Methylase) subunit
           [Yersinia aldovae ATCC 35236]
          Length = 776

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 215/494 (43%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVREKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L      +    E   A    ++
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPEDIKALNEEDV 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE     
Sbjct: 66  DTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNF----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + +++L E AG   K   +       I ++ +   D V+  IYE+L+ +F +   + A
Sbjct: 126 LETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLLEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L + ++     A   +    I+ +YDPT G+G  L   +N       + 
Sbjct: 185 GEFYTPHEVSVLMSNII-----AHELKHKNTIK-IYDPTSGSGSLL---INIGEAFEQYA 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------- 286
           K    +    QEL+  T+ +    +++R +++   +      + G TL +D         
Sbjct: 236 KNKDSITYFAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEEDWPYFDDSDP 290

Query: 287 ---FTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +        +SNPP+ + W+   KD D            RFG   PK +     FL+
Sbjct: 291 LGSYYALHVDAVVSNPPYSQNWDPSFKDSDP--------RYSRFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G    AIVL    LF G     E +IR+ L+E + I+ ++ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGQIRKQLIEQNHIDTVIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I T + +L   K + +   V +++A+  +     EGK  ++   D +R I D  ++RE
Sbjct: 394 TGIPTVILVL---KQKRQNTDVLVVDASKHFMK---EGKNNKLQASDIKR-ITDAVINRE 446

Query: 461 N-GKFSRMLDYRTF 473
           +  KFS+ +  +T 
Sbjct: 447 SIDKFSQRVSKQTL 460


>gi|261380921|ref|ZP_05985494.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria
           subflava NJ9703]
 gi|284796174|gb|EFC51521.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria
           subflava NJ9703]
          Length = 871

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 154/320 (48%), Gaps = 41/320 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++ D      K+   +  ++YDPT
Sbjct: 165 VLGFIYEYLISMFAANAGKKAGEFYTPHEVSLLMSEIIADH----LKDREEI--SIYDPT 218

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +  + VA    H K    +  + QEL+  T+ +    +++R +   P    +
Sbjct: 219 SGSGSLLINIGHSVA---KHLKSADSIKYYAQELKENTYNLTRMNLVMRGIL--PSNIFT 273

Query: 274 KNIQQGSTLSKDL-FTGKRFHY--CLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLP 329
           +N     TL  D    G+  +    +SNPP+ + W  KDK++      +    RFG    
Sbjct: 274 RN---ADTLEDDWPLEGEPLYLDAVVSNPPYSQPWNPKDKES------DIRYKRFGVAPQ 324

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE-IRRWLLENDLIE 388
             +D    FL+H  +   L P+G     IVL    LF G    GE E IR+ L+E + I+
Sbjct: 325 AKAD--FAFLLH--DLFHLKPDG--IMTIVLPHGVLFRG----GEEEKIRKNLIEYNHID 374

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           AI+ LP ++FF T I T + +L   + E  R  V +I+A+  +  +   GK   +   D 
Sbjct: 375 AIIGLPANIFFGTGIPTIIVVL---RQERERNDVLMIDASKYFIKV---GKNNHLQASDI 428

Query: 449 RRQILDIYVSRENGKFSRML 468
           +R +  +   RE  KFSR++
Sbjct: 429 KRIVDCVTHRRELPKFSRIV 448


>gi|91217919|ref|ZP_01254872.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
 gi|91183896|gb|EAS70286.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
          Length = 505

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 50/311 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   Y +L+ +F S   +   +F TP++V  L   L+          SP     ++DPT
Sbjct: 164 ILGEAYMYLLEKFASGAGKKGGEFFTPKEVSGLLAKLV----------SPKEGDRIFDPT 213

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--D 271
           CG+G  L        D   +         +GQE   +T A+      +  ++S      D
Sbjct: 214 CGSGSLLIKVAEETKDAKGN--TTNNFAIYGQESNGDTWALSKMNCFLHTMDSAQIEWCD 271

Query: 272 LSKN--IQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGE---LGRFG 325
              N  +++G  L K       F   ++NPPF   KW          H+N E     RF 
Sbjct: 272 TINNPKLKEGDALMK-------FDIVVANPPFSLDKWG---------HENAEADRYKRFL 315

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P  S G   F++H+  +  LP    G+  +++    LF G   S E +IR+ L+E +
Sbjct: 316 RGVPPKSKGDYAFILHMI-ETTLPT---GKVGVIVPHGVLFRG---SAEQKIRQKLIEEN 368

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+EA++ LPT+LF+ T I   + I +  KT E    +  ++A+  +    ++GKK+ ++ 
Sbjct: 369 LLEAVIGLPTNLFYGTGIPAAILIFNKAKTTE---DILFMDASKEF----DDGKKQNVLR 421

Query: 446 DDQRRQILDIY 456
                +I+  Y
Sbjct: 422 TQDINKIVTTY 432


>gi|118580277|ref|YP_901527.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
 gi|118502987|gb|ABK99469.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
          Length = 540

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 127/283 (44%), Gaps = 38/283 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TP  +V    A+L  P              +YDP 
Sbjct: 164 ILGQVYEYFLGQFASAEGKRGGQFYTPASIVRTLVAILA-PHHG----------QVYDPC 212

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   +I  + + +GQE  P T  +    + IR +      D +
Sbjct: 213 CGSGGMFVQSEKFIEAHGG--RIGDVSI-YGQESNPTTWRLAAMNLAIRGI------DFN 263

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +   T  ++     R  + L+NPPF     W    +            R+  G P  
Sbjct: 264 LGKEPADTFVRNQHPDLRADFVLANPPFNVSDWWHPSLEGDP---------RWEYGTPPQ 314

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+   L+  P G  RA IVL++  + + +  + E EIRR L+E D +E +V
Sbjct: 315 GNANYAWLQHMLYHLK--PTG--RAGIVLANGSMSSSQ--NSEGEIRRALVEADKVEVMV 368

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           A+P  LFF T I   LW L+ +K+  R+G+V  I+A  L T I
Sbjct: 369 AMPGQLFFNTQIPACLWFLAKQKS-VRQGEVLFIDARKLGTMI 410


>gi|302345836|ref|YP_003814189.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302149936|gb|ADK96198.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 501

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 188/458 (41%), Gaps = 60/458 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IWK A+ L G+   +++  V+L    L+ +    E      + + L   G   + +    
Sbjct: 15  IWKAADLLRGNLDASEYKSVVLGLIFLKYISDKFE-----TKYQELVNNGEGFEEDRDEY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS------STIARLE 128
           +A   F+   E   S +        + + I    DNA  + E  +           AR E
Sbjct: 70  MADNIFFVPQEARWSVVAKAAHTPEIGTII----DNAMRLIEKENLRLKGILPKNFARPE 125

Query: 129 -KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L  +   F+ I++        ++   YE+ + +F     + A +F TP  +V   
Sbjct: 126 LDKRRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGKLAGEFYTPACIVQTL 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L        K   G +   YDP CG+GG    +   +     H      +  +GQ+ 
Sbjct: 186 VEVL--------KPYHGRV---YDPACGSGGMFVQSAKFIE---RHQGNIKDISVYGQDS 231

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE 306
            P T  +    + IR +E+D    L K      T   D     +  + ++NPPF    W 
Sbjct: 232 NPTTWKMAQMNLAIRGIEAD----LGKF--NADTFFDDQHPTLKADFIMANPPFNLSDWG 285

Query: 307 KDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            DK  D V          R+  G+P   + +  +L H+ +   L P G  +  +VL++  
Sbjct: 286 ADKLQDDV----------RWKFGIPPSGNANFAWLQHMIH--HLSPKG--KIGMVLANGS 331

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L +   G G   IR  +++ DLIE IVALP+ LF+ T I   LW L+  K  +++ K+  
Sbjct: 332 LSSQTGGEGT--IRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNREK--KQKDKILF 387

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           ++A ++ T +    +K R + +   R+I D +    +G
Sbjct: 388 VDARNMGTMVT---RKLRELQEADIRKIADTFDKYSDG 422


>gi|94265469|ref|ZP_01289219.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
 gi|93454011|gb|EAT04352.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
          Length = 480

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 143/333 (42%), Gaps = 41/333 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ R  SEV  GA  + TPR V+      +          +P +  ++ DP 
Sbjct: 125 VKGEIYEGLLERNASEVKSGAGQYFTPRPVIETIVKCV----------NPQIGESVCDPA 174

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +H+ +     +    L      G ++  E   +C   + +  L +    
Sbjct: 175 CGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHGLGNG--- 231

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK------WEKDKDAVEKEHKNGELGRF 324
                ++Q   L+ D   G RF+  L+NPPFGKK       E      E+EH   E  +F
Sbjct: 232 --GSPVEQRDALAGD--NGHRFNVVLTNPPFGKKSSYKVVGEDGAVTSEREHYEREDFKF 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN-GRAGSGESEIRRWLLE 383
                  S+    FL H+   LE      GRA +VL  + LF  GRAG G   IR+ LLE
Sbjct: 288 -----TTSNKQFNFLQHIMTILE----AHGRAGVVLPDNVLFEAGRAGEG---IRKRLLE 335

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
                 ++ LPT +++   +   + +  +++   R  + + +   DL T+I    K +R+
Sbjct: 336 GFNFHTLLRLPTGIWYSPGVKANV-LFFDKRPASREVQTRELWVYDLRTNIHKTLKTKRL 394

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
            + D     +  Y  R+  +  R   Y+    R
Sbjct: 395 THAD-FDDFIHCYHKRQETERFRRFSYQELAKR 426


>gi|291296826|ref|YP_003508224.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
 gi|290471785|gb|ADD29204.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
          Length = 538

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 185/463 (39%), Gaps = 80/463 (17%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  T +       +WK A+ L G     ++  V+L    L+ +  A E     + E   A
Sbjct: 11  TPTTAATVGYEAELWKMADTLRGSMDAAEYKHVVLGLIFLKYISDAFEELHRKL-EAERA 69

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-- 119
            G    D + +   A   F+   E   + L +       +  I    DNA A  E  +  
Sbjct: 70  QGADPEDPDEYR--AQNIFWVPPEARWAHLKAQAR----QPTIGQLVDNAMACIERDNPA 123

Query: 120 ----FSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSE 172
                    AR  L+K   L ++    S I++  +    + V+  +YE+ + +F S   +
Sbjct: 124 LKGVLPKEYARPALDKT-RLGQLIDLISNIKVGDEEARAKDVLGRVYEYFLSQFASAEGK 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVA 228
              +F TPR VV L   +L           P   R +YDP CG+ G    ++     H  
Sbjct: 183 KGGEFYTPRCVVKLLVEML----------EPYHGR-VYDPCCGSAGMFVQSVEFIRAHAT 231

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G+  +    +  +GQE    T  +    + IR +E          I  G T   D F 
Sbjct: 232 GNGNGGRAKADISIYGQESNYTTWRLAKMNLAIRGIEG--------QIAHGDTFHNDKFP 283

Query: 289 GKRFHYCLSNPPF------GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             +  + L+NPPF      G++   DK             R+  G+P + + +  ++ H+
Sbjct: 284 DLKADFILANPPFNVSDWGGERLRDDK-------------RWQYGVPPVGNANFAWVQHI 330

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                L P G   A  VL++  + + +  SGE EIR+ L+E  L++ +VALP  LF+ T 
Sbjct: 331 V--YHLSPTG--VAGFVLANGSMSSNQ--SGEGEIRKNLIEAGLVDCMVALPGQLFYSTQ 384

Query: 403 IATYLWILSNRKT---------------EERRGKVQLINATDL 430
           I   LW L+  ++                +RRG++  I+A  +
Sbjct: 385 IPACLWFLARDRSSRPYGAAGAAPGGKFRDRRGEILFIDARKM 427


>gi|332983357|ref|YP_004464798.1| N-6 DNA methylase [Mahella australiensis 50-1 BON]
 gi|332701035|gb|AEE97976.1| N-6 DNA methylase [Mahella australiensis 50-1 BON]
          Length = 894

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 144/328 (43%), Gaps = 40/328 (12%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+ + +F  E  +    F TP +V  +   L+   +    K+ P    TLYD
Sbjct: 135 DDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRIIARLIGIGN---IKQMPTKKWTLYD 191

Query: 212 PTCGTGGFLTDAMNH--VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  G+G  L  A +   V + G       I+   GQE +  T  +    +++    +   
Sbjct: 192 PAAGSGSLLIRAADEAPVDENGDS-----IVTIFGQEKDIATAGLARMNLILHHKGTG-- 244

Query: 270 RDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
                 I++G+TL    FT      K+F + + NPPF  K W     A E ++K     R
Sbjct: 245 -----EIKKGNTLVSPAFTDDFGELKKFDFIVMNPPFSDKSWSDGIKATEDKYK-----R 294

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F G G+P   +G   + +H+   L    +  G+A I++    LF G +   E  IR  +L
Sbjct: 295 FDGYGIPPEKNGDYAWFLHVLKSL----DDNGKAGIIMPHGILFRGNS---EETIRIAIL 347

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
               I+ I++LP +LF+ T I   + I+     + R G + LI+A+      + +G K R
Sbjct: 348 RKRYIKGIISLPANLFYGTGIPACIVIIDKENADTRDG-IFLIDAS---RGFKKDGNKNR 403

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDY 470
           +   D  + +       E   +SR + Y
Sbjct: 404 LREQDIEKIVRTFINQEEIEGYSRFVKY 431


>gi|116669552|ref|YP_830485.1| N-6 DNA methylase [Arthrobacter sp. FB24]
 gi|116609661|gb|ABK02385.1| N-6 DNA methylase [Arthrobacter sp. FB24]
          Length = 527

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 139/307 (45%), Gaps = 43/307 (14%)

Query: 148 DTVPDRVMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           D   D V+  +YE+ + +F G E  + A  F TPR VV     +L           P   
Sbjct: 164 DHGSDDVLGRVYEYFLGQFAGKETGKDAGAFYTPRSVVKTLVEML----------EPFHG 213

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           R +YDP CG+GG    +   V   G       +   +GQE    T  +    + +R +E+
Sbjct: 214 R-VYDPACGSGGMFVQSAEFVTAHGGERTDISV---YGQEFTDTTWKLAKMNLALRGIEA 269

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG 325
           D         +   + ++DL    R  + ++NPPF    W   K A +         R+ 
Sbjct: 270 D------LGDRSADSFTQDLHRDLRADFIIANPPFNVSNWWNAKLADDP--------RWK 315

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  ++ H  +   L P G   A  VLS+  L +  +G GE  IRR L+E D
Sbjct: 316 YGTPPEGNANFAWVQHFLH--HLSPKG--TAGFVLSNGSLSSKSSGEGE--IRRKLVEAD 369

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKR 441
           L++ IVA+P  LFF T I   LW +S  +       R+G+V  I+A+ L    R E ++ 
Sbjct: 370 LVDCIVAMPDKLFFNTGIPVSLWFISKERHGNGHRARQGEVLFIDASKLG---RMENRRL 426

Query: 442 RIINDDQ 448
           R+++DD+
Sbjct: 427 RVLDDDR 433


>gi|312870866|ref|ZP_07730971.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093556|gb|EFQ51895.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 3008A-a]
          Length = 502

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 170/432 (39%), Gaps = 77/432 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIE---- 107

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MSNIYEHL 162
                  E   L   + KN++  +L    + D V                  +   YE+ 
Sbjct: 108 ------AENKTLKDVLPKNYASPDLAKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYC 161

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F  +  +   +F TP  +V    ++L   D+            +YD  CG+GG    
Sbjct: 162 IAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQ 211

Query: 223 AMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   + A  G+   I      +GQE   +T  +    M IR +++D          Q  T
Sbjct: 212 SAKFIRAHSGNRGSISI----YGQEANADTWKMAKMNMAIRGIDAD------LGPYQADT 261

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            + DL    +  + L+NPPF    W ++K  D V          R+  G P   + +  +
Sbjct: 262 FTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNANYAW 311

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+ +   L PNG  +  +VL++  L + + G GE  IR+ ++E+DLIE I+++P+ LF
Sbjct: 312 IQHMIH--HLAPNG--KIGLVLANGALSSQKCGEGE--IRQKIIEDDLIEGIISMPSKLF 365

Query: 399 FRTNIATYLWIL 410
           +   ++  LW +
Sbjct: 366 YSVTLSVTLWFI 377


>gi|17230180|ref|NP_486728.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
 gi|17131781|dbj|BAB74387.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
          Length = 657

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 149/314 (47%), Gaps = 47/314 (14%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F ++  +    F TP +V  + + ++          +    +T+YDPTCG+G  L  
Sbjct: 1   MRNFATQSGKSKGQFYTPAEVSRVISQVIG------VNSAQSQSQTIYDPTCGSGSLLLK 54

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + +  A+ G        L  +GQE++  T A+    M+   L   P    +  I Q +TL
Sbjct: 55  SADE-AERG--------LTIYGQEMDNATRALARMNMI---LHGHP----TAEIWQDNTL 98

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP-GLPKISDGS 335
           S   F       K F + ++NPPF  K W    D  + E +     RF   G+P   +G 
Sbjct: 99  SSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKDEFQ-----RFDNYGIPPAKNGD 153

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H+   L+      G+ AI+L    LF G A   E+EIR+ L+   +I+ I+ LP 
Sbjct: 154 YAFLLHMVCSLK----SNGKGAIILPHGVLFRGNA---EAEIRKNLISKGIIKGIIGLPP 206

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T I   + +L     E R+G + +I+A+  +     +G K R+   D  + I+D+
Sbjct: 207 NLFYGTGIPACIIVLDKEDAENRQG-IFMIDASKGFVK---DGNKNRLREQDIHK-IVDV 261

Query: 456 YVSR-ENGKFSRML 468
           +  + E  K+SRM+
Sbjct: 262 FNKQLEVAKYSRMV 275


>gi|329919647|ref|ZP_08276625.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners SPIN 1401G]
 gi|328937299|gb|EGG33723.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners SPIN 1401G]
          Length = 502

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 169/432 (39%), Gaps = 77/432 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +      R + L
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDK-----RYQEL 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+   E    T+        + S I    DNA    E    
Sbjct: 56  VAEGDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSII----DNAMRAIE---- 107

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MSNIYEHL 162
                  E   L   + KN++  +L    + D V                  +   YE+ 
Sbjct: 108 ------AENKTLKDVLPKNYASPDLAKQVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYC 161

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F  +  +   +F TP  +V    ++L   D+            +YD  CG+GG    
Sbjct: 162 IAKFAEKEGKSGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQ 211

Query: 223 AMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   + A  G+   I      +GQE   +T  +    M IR +++D          Q  T
Sbjct: 212 SAKFIRAHSGNRGSISI----YGQEANADTWKMAKMNMAIRGIDAD------LGPYQADT 261

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            + DL    +  + L+NPPF    W ++K  D V          R+  G P   + +  +
Sbjct: 262 FTNDLHPTLKADFILANPPFNYSPWNQEKLLDDV----------RWKYGTPPAGNANYAW 311

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+ +   L PNG  +  +VL++  L       GE EIR+ ++E+DLIE I+++P++LF
Sbjct: 312 IQHMIH--HLAPNG--KIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISMPSNLF 365

Query: 399 FRTNIATYLWIL 410
           +   ++  LW +
Sbjct: 366 YSVTLSVTLWFI 377


>gi|260887979|ref|ZP_05899242.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|330838539|ref|YP_004413119.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260862230|gb|EEX76730.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|329746303|gb|AEB99659.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 525

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 192/483 (39%), Gaps = 74/483 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRSAVREKY 59
           A L   IW+ A DL G     DF + +L     R +   L         E   +A     
Sbjct: 10  AELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTNYLNREAQEAGDAAFDYAA 69

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA------ 113
           L+   +  + E+ V+  GY F   SE   +   S  T  NL   +     N +A      
Sbjct: 70  LSDEEAETERENLVEEQGY-FILPSELFANVRKSAPTNENLNETLEKVFHNIEASATGTA 128

Query: 114 -------IFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
                  +FED D +S        E+   L K+      ++L  + D   D    + YE+
Sbjct: 129 SENDLAGLFEDLDVNSNKLGATVKERNAKLVKLLDGIGEMQLGHYRDNTID-AFGDAYEY 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   ++ TP++V  L T L +             +  +YDP CG+G  L 
Sbjct: 188 LMGMYASNAGKSGGEYYTPQEVSELLTRLTVI--------GKARVNKVYDPACGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                +      +        +GQE+   T+ +C   M +  +  D       +I +G T
Sbjct: 240 KFAKILGKENVRNGF------YGQEINITTYNLCRINMFLHDINFD-----DFDIARGDT 288

Query: 282 LS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           L+    D F  + F   +SNPP+  +W   ++ +          RF P   L   S    
Sbjct: 289 LTDPQHDAF--EPFEAIVSNPPYSIRWAGKENPLLINDP-----RFAPAGVLAPPSKADF 341

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L       G AAIV     ++ G A   E +IR++L++++ ++A++ LP +
Sbjct: 342 AFILHALAWLA----ANGTAAIVCFPGIMYRGGA---EKKIRQYLIDSNFVDAVIQLPDN 394

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L   K +        I+A+     + N  K    +  +    IL +Y
Sbjct: 395 LFFGTSIATCIMVLKKSKADT---TTLFIDASKECIKVTNNNK----LTQENIEHILQMY 447

Query: 457 VSR 459
             R
Sbjct: 448 TDR 450


>gi|117676102|ref|YP_863678.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
 gi|117614926|gb|ABK50379.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
          Length = 874

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 146/606 (24%), Positives = 255/606 (42%), Gaps = 105/606 (17%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    T+  +  E   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALNEEDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +++      +A  + + T          +N R+ L ++    S   K +FE     
Sbjct: 66  DTVKYIQDNLGYFIAYDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDR------VMSNIYEHLIRRFGSEVSE 172
             + +++L E AG   K  K  S +     ++P        V+  IYE+LI +F +   +
Sbjct: 126 LETGLSKLGESAG---KRTKAISDLLHLIKSIPMNGKQGYDVLGYIYEYLIEKFAANAGK 182

Query: 173 GAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            A +F TP +V  L + ++   L   D +          +YDPT G+G  L +    V  
Sbjct: 183 KAGEFYTPHEVSVLMSHIIAHELKHKDTI---------EIYDPTSGSGSLLINIGEAVE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
              + K    +  + QEL+  T+ +    +++R +++   +      + G TL  D    
Sbjct: 233 --KYAKSKDSITYYAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEDDWPYF 285

Query: 286 -------LFTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                   +        +SNPP+ + W+   KD D            RFG   PK +   
Sbjct: 286 DENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDP--------RYSRFGLA-PK-TKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H  +   L P+G     IVL    LF G     E EIR+ L+E + I+AI+ LP 
Sbjct: 336 FAFLLH--DLYHLKPDG--IMTIVLPHGVLFRG---GEEGEIRKQLIEQNHIDAIIGLPA 388

Query: 396 DLFFRTNIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           ++FF T I T + +L  ++   ++ +  V +++A+  +     EGK  ++   D +R I+
Sbjct: 389 NIFFGTGIPTVILVLKQKRGSIDKPQNDVLIVDASKHFVK---EGKNNKLQASDIKR-IV 444

Query: 454 DIYVSREN-GKFSRMLDYRTF---GYR----RIKVLRPLRMSFILDKTGLARLEADITWR 505
           D  ++R++  KFS+++  +T    GY     R     P   S+ L  T L      I   
Sbjct: 445 DAVINRDSIEKFSQVVSKQTLRDNGYNLNIPRYVDSSPAAESWDLHATML----GGIPNS 500

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK--VKAS---KSFIVAF 560
           +++ LHQ +W         Q +P      FV +S   +E    K  V A+    S +V F
Sbjct: 501 EIAQLHQ-YW---------QAFPQLHDALFVAKSAAHSELAIAKRDVNATITQHSQVVEF 550

Query: 561 INAFGR 566
           + A+ +
Sbjct: 551 VTAYNQ 556


>gi|329948021|ref|ZP_08294922.1| type I restriction-modification system, M subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328523160|gb|EGF50261.1| type I restriction-modification system, M subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 519

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 200/465 (43%), Gaps = 62/465 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVRE--------KYL 60
           +L   IW+ A DL G     DF   +L F   R + E   E   +  RE        ++L
Sbjct: 9   ALHRAIWRVANDLRGSVDGWDFKAYVLGFLFYRFISENLTEYINAGEREAGDPDFDYRFL 68

Query: 61  AFGGSN------IDLESFVKVAGYSFYNTSEYSL--STLGSTNTR--NNLESYIASFSDN 110
           +   +       I+ + F    G  F N  E +     L  T +R   ++E+        
Sbjct: 69  SHADAEGARDGIIEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFKSIEASATGTGSE 128

Query: 111 A--KAIFEDFDFSST-IARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           +  + +F+D D +ST + R   ++   L ++ +    ++L           + YE L+  
Sbjct: 129 SDLRGLFDDVDVNSTKLGRTVAQRNDKLTRLMQAIGDLDLSYGESSIDTFGDAYEFLMTM 188

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + S   +   +F TP+++  +   + +     + K+S   +  +YDP CG+G  L   + 
Sbjct: 189 YASNAGKSGGEFFTPQEISEVLARITV-----MGKKS---VNRVYDPACGSGSLL---LK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                G  +         GQE+   T+ +C   M +  +      D S  I  G TL+  
Sbjct: 238 FAKVLGKENVRGGFF---GQEINLTTYNLCRINMFLHDINF---ADFS--IVHGDTLTDP 289

Query: 286 L-FTGKRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +  + F   +SNPP+  KW  KD  A+  + +    G   P     S   + F MH+ 
Sbjct: 290 AHWDDEPFEAIVSNPPYSTKWIGKDDPALVNDPRFSPAGVLAPK----SRADLAFTMHML 345

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L +     G AAIV     LF G A   E++IR++L+EN+ ++A++ LP DLFF T I
Sbjct: 346 SWLAVD----GTAAIVEFPGVLFRGAA---EAKIRQYLVENNYVDAVIQLPPDLFFGTQI 398

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           AT + +L   K +     V  ++A+  +     EG K ++  ++Q
Sbjct: 399 ATCIIVLKKSKQDN---SVLFVDASKQFV---REGNKNKLSAENQ 437


>gi|291530635|emb|CBK96220.1| type I restriction system adenine methylase (hsdM) [Eubacterium
           siraeum 70/3]
          Length = 534

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 200/491 (40%), Gaps = 75/491 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFG 63
           A  L+N +W  A DL G    + F   IL     R L    E     + +     Y    
Sbjct: 12  AQELSNKLWAIANDLRGTMDASKFKDYILGIIFYRFLSEKTEKYMEEILKNDGITYADAL 71

Query: 64  GSNIDLESFVKVAGYSFYNTS-----EYSLSTL---------GSTNTRNNLESYIASFSD 109
            SN D E    +  YS  N       EYS   +         G   + + LE  IAS   
Sbjct: 72  ASN-DEELLAALDKYSLDNLGYIIRPEYSFGYIVNMIANKYDGKVFSVDYLEKAIASIQQ 130

Query: 110 N-----AKAIFE---------DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           +     ++A F+         D D    ++  ++   + K+    + IE   D     V+
Sbjct: 131 STLGQKSEAAFDGIFDAMDLKDKDLGKEVS--DRTKQIAKVINRVNDIEFSYDDAQFDVL 188

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM--IRTLYDPT 213
              Y  LI  F S+  +   +F TP  V  L + L           + G+  ++ + DPT
Sbjct: 189 GTAYMILIGLFASDSGKKGGEFFTPSAVSELCSKL----------ATVGLKSVKNVCDPT 238

Query: 214 CGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CG+   L +    V   G    H +      +GQEL   T+ +    ML+  +   P + 
Sbjct: 239 CGSASMLLEVRKAVIANGGTDEHAVGHY---YGQELNGTTYNLARMNMLMHDV---PYQY 292

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              N+   +TL KD F   +F   ++NPP+  KW      ++    +G  G+  P     
Sbjct: 293 F--NLFNDNTLEKDNFGATKFTVQVANPPYSAKWSASSSFLDDPRFSGA-GKLAPS---- 345

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S     F+ H+   ++      GR A++L    LF  R+GS E  IRR+L+++ ++++A+
Sbjct: 346 SKADFAFVEHMVYHMD----DDGRIAVLLPHGVLF--RSGS-EDTIRRYLIKDLNVLDAV 398

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF  T I     +L   +     G +  I+A+  +T     GK    ++ +   
Sbjct: 399 IGLPANLFHGTGIPVCCLVLRKYRN-GNAGNICFIDASKYYTP----GKNMNQLSAEDID 453

Query: 451 QILDIYVSREN 461
           +I++ YV R++
Sbjct: 454 RIVNAYVERKD 464


>gi|94970784|ref|YP_592832.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345]
 gi|94552834|gb|ABF42758.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345]
          Length = 511

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 178/427 (41%), Gaps = 58/427 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A+ L  +    ++  V+L    L+ +  A E   + + +K +  G    D + +  
Sbjct: 14  LWSMADALRNNMDAAEYKHVVLGLIFLKYISDAFEAKHAELEQK-MDQGADPEDPDEYRA 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK----A 130
           V+   F+   E   + L      N  +  I +  D+A A  E  D  S    L K     
Sbjct: 73  VS--IFWVPREARWAHL----KDNAPQPKIGTLVDDAMAAIER-DNQSLKGVLPKDYARP 125

Query: 131 GL----LYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           GL    L ++    SGI L  P      ++  +YE+ + +F S   +    F TP  VV 
Sbjct: 126 GLDKQRLGQLINLVSGIGLGTPAARAKDILGRVYEYFLAQFASAEGKKGGQFYTPSHVVR 185

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   +L     A +K        +YDP CG+GG    +   +    +H      +  +GQ
Sbjct: 186 ILVEML-----APYKGR------VYDPCCGSGGMFVSSEKFIE---AHSGKLGDISIYGQ 231

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK- 304
           E    T  +    + IR +++         IQ G T   D     +    L+NPPF    
Sbjct: 232 ESNYTTWRLAKMNLAIRGIDA--------QIQHGDTFHNDRHPDLKADCVLANPPFNDSD 283

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  +   + KE K     R+  G+P   + +  ++ H      L P G   A  VL++  
Sbjct: 284 WRGE---LLKEDK-----RWVFGVPPAGNANFAWIQHFI--YHLAPTG--LAGFVLANGS 331

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRG 420
           +      SGE EIR+ ++E+DL++ +VALP  LF+ T I   LW ++  K+      RRG
Sbjct: 332 MSTNT--SGEGEIRKGIIESDLVDCMVALPGQLFYSTGIPVCLWFVARSKSSGRFRNRRG 389

Query: 421 KVQLINA 427
           +   I+A
Sbjct: 390 ETLFIDA 396


>gi|91787817|ref|YP_548769.1| N-6 DNA methylase [Polaromonas sp. JS666]
 gi|91697042|gb|ABE43871.1| N-6 DNA methylase [Polaromonas sp. JS666]
          Length = 535

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 38/288 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +V   ++  +YE+ +  F S   +    F TP  +V    A+L +P              
Sbjct: 159 SVARDILGQVYEYFLGMFASAEGKRGGQFYTPASIVKTLVAVL-NPHSG----------K 207

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+GG    +   +   G       I   +GQE  P T  +    + IR +    
Sbjct: 208 VYDPCCGSGGMFVQSEKFIEAHGGKLGDASI---YGQEANPTTWRLAAMNLAIRGI---- 260

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP 326
             D +   +   T  ++     R  + L+NPPF     W             G+  R+  
Sbjct: 261 --DFNLGREPADTFVRNQHPDLRADFILANPPFNISDWWHASL--------TGD-ARWQY 309

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+ + L+  P G  RA IVL++  + + +  + E +IR  ++E D+
Sbjct: 310 GDPPTGNANYAWLQHMLHHLK--PTG--RAGIVLANGSMSSSQ--NSEGQIRAAMVEADV 363

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           +E ++ALP  LFF T I   LW L  +KT  R+G+V  I+A  L T I
Sbjct: 364 VEVMIALPGQLFFNTQIPACLWFLVKKKT-RRQGEVLFIDARKLATMI 410


>gi|148927366|ref|ZP_01810897.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
 gi|147887265|gb|EDK72726.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
          Length = 675

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 39/287 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ +F S+   GA  + TPR ++   T  L           P   +T+ D  
Sbjct: 125 VKGEIYEGLLEKFASDTKTGAGQYFTPRPLIQAMTECL----------RPEPSKTMADFA 174

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269
            GTGGF     +++A+    +K     + +    G E+ P T  +C+  + +  +     
Sbjct: 175 AGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTFTGNEIVPATARLCLMNLFLHNIGD--- 231

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE---KDKDAVE-KEHKNGELGRFG 325
            D    I    +L+ D  +GKRF Y L NPPFGKK      ++D  + KE    E   F 
Sbjct: 232 MDSKPPIHLTDSLASD--SGKRFDYILMNPPFGKKSSITVSNEDGTQSKESLTYERQDF- 288

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S+  + F+ H+ ++L++     G+AA+++  + LF G  G+GE+ IR+ LL+  
Sbjct: 289 --WTTTSNKQLNFVQHICSQLKV----DGKAAVIVPDNVLFEG--GAGET-IRKKLLQTT 339

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            I  I+ LPT +F+   +   +    NR   +       +   D+W 
Sbjct: 340 EIHTILRLPTGIFYANGVKANVIFFDNRPASKE------VQTKDVWV 380


>gi|77164707|ref|YP_343232.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|254433310|ref|ZP_05046818.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|76883021|gb|ABA57702.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|207089643|gb|EDZ66914.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 499

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 37/306 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+    +++    LY++ K   G++     +   +  +IYE L+ +   +   GA  + T
Sbjct: 93  FTKAQNKIQDPAKLYRLIKMVDGVQW--VMMGADIKGDIYEGLLEKNAEDTKSGAGQYFT 150

Query: 180 PRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGG-------FLTDAMNHVADCG 231
           PR ++  +   +  +PD           RT+ DP CGTGG       FL+D  ++  D  
Sbjct: 151 PRALIKAIVECVRPEPD-----------RTIADPACGTGGFFLAAYDFLSDPKHYSLDKA 199

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H +      HG E+   T  +C+  M +  + E D    +S N    +       +G+
Sbjct: 200 QKHFLKHETF-HGNEIVANTRRLCLMNMFLHHIGEIDGESAISPNDALVAP------SGQ 252

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELP 349
            + Y L+NPPFGKK        E E ++ +L           S+  + F+ H+   L+  
Sbjct: 253 SYDYVLANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWATTSNKQLNFVQHIRTLLKTT 312

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+AA+V+  + LF G  G+GE+ IRR LLEN  +  I+ LPT +F+   +   +  
Sbjct: 313 ----GKAAVVVPDNVLFEG--GAGET-IRRKLLENTDLHTILRLPTGIFYAHGVKANVLF 365

Query: 410 LSNRKT 415
             NR+ 
Sbjct: 366 FDNREA 371


>gi|116495552|ref|YP_807286.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei ATCC 334]
 gi|116105702|gb|ABJ70844.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei ATCC 334]
          Length = 532

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 161/355 (45%), Gaps = 46/355 (12%)

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +FED D  S        ++  ++  + K  S ++L      D ++ + YE+LI +F S+
Sbjct: 132 GLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQNTND-ILGDAYEYLIGQFASD 190

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  L T +      A+  +      T+YDPT G+G  L +A  +   
Sbjct: 191 SGKNAGEFYTPQSVSRLITQI------AMHGKEDVRGFTIYDPTMGSGSLLLNARRY--- 241

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LF 287
             S+ ++   +   GQEL   T+ +    M++  +  +     ++++    TL +D  + 
Sbjct: 242 --SNERLS--INYFGQELNTSTYNLARMNMILHGVPIN-----NQHLHNADTLDQDWPIE 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
               F   + NPP+   W+  K   E +       RF   GL   S     FL+H    L
Sbjct: 293 EPTNFDAVVMNPPYSAHWQPSK-GTEND------PRFVSYGLAPKSKADFAFLLHGYYHL 345

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G   IVL    LF G A   E  IR+ LLEN  I+ ++ LP ++FF T+I T 
Sbjct: 346 K----DTGVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVIGLPANIFFNTSIPTT 398

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + +L   +T      V  I+A+  +   +N+      + DD  ++IL+  ++R++
Sbjct: 399 VTVLKKSRTTR---DVLFIDASKEFEKAKNQNH----LTDDNIQKILETCINRKD 446


>gi|332983076|ref|YP_004464517.1| type I restriction-modification system, M subunit [Mahella
           australiensis 50-1 BON]
 gi|332700754|gb|AEE97695.1| type I restriction-modification system, M subunit [Mahella
           australiensis 50-1 BON]
          Length = 521

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 47/338 (13%)

Query: 112 KAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
           K +F+D D       ST+A+  +   L ++  + + ++L  + D   D    + YE+L+ 
Sbjct: 135 KGLFDDLDVNSNKLGSTVAKRNEK--LAQLLDSIAEMKLGDYKDNTID-AFGDAYEYLMG 191

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S   +   ++ TP++V  L T L L             +  +YDP CG+G  L    
Sbjct: 192 MYASNAGKSGGEYYTPQEVSELLTRLTL--------VGKTEVNKVYDPACGSGSLLLKFA 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +       K    L   GQE+   T+ +C   M +  ++ D       NI  G TL+ 
Sbjct: 244 KILG------KDNVRLGFFGQEINITTYNLCRINMFLHDIDYDKF-----NIALGDTLTD 292

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
                   F   +SNPP+   W+ D D +          RF P   L   S   + F+MH
Sbjct: 293 PKHRDNEPFEAIVSNPPYSISWKGDSDPILINDP-----RFAPAGVLAPKSKADLAFIMH 347

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP +LF+ T
Sbjct: 348 CLAWLA----ANGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNYIDCIIQLPDNLFYGT 400

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +IAT + +L   K  +R      I+A+  +    N  K
Sbjct: 401 SIATCIMVL---KKSKRDNSTLFIDASKEFVKATNNNK 435


>gi|253681576|ref|ZP_04862373.1| type I restriction-modification system, M subunit [Clostridium
           botulinum D str. 1873]
 gi|253561288|gb|EES90740.1| type I restriction-modification system, M subunit [Clostridium
           botulinum D str. 1873]
          Length = 538

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 122/500 (24%), Positives = 210/500 (42%), Gaps = 94/500 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A  + + +W+ A  L G    +++   ILPF   R L        S  +++YL   G  
Sbjct: 3   NAKDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYL--------SENQDEYLKVNG-- 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLS-----TLGSTNTRNNLESYIA--------------SF 107
             LE F +V            +S      +    T N + S I               SF
Sbjct: 53  --LEEFYEVTDEDEKEEYLEEISKGIGYAIDPAYTWNKIVSKIEDHKIKASDFQDMFDSF 110

Query: 108 SDNAK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           + NAK           +F D +   T  RL     E+A  L  I    +      D+  D
Sbjct: 111 NTNAKRNAVAEADFANVFSDVNLGDT--RLGSSTNERAKALNDIVLMINEFNFKDDSGRD 168

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYD 211
            ++ ++YE+LI +F +   +   +F TP +V   LA  + +D          G    +YD
Sbjct: 169 -ILGDVYEYLIGQFAANAGKKGGEFYTPHEVSQILAKIVTVDA------HRTGNQFRVYD 221

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L      +        +       GQEL   T+ +    +++  +     R+
Sbjct: 222 PTMGSGSLLLTVQKELPYGDEEGSVEFF----GQELNTTTYNLARMNLMMHGVN---YRN 274

Query: 272 LSKNIQQGSTLSKDL-FTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +   +++  TL  D  F  K       +F   ++NPP+ +KW       EK+       R
Sbjct: 275 ME--LKRADTLDADWPFAEKDGTQIPLKFDAVVANPPYSQKWNTKDVDREKDI------R 326

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F G G+   S     F++H    L+      G  AIVL    LF  R+ S E +IR+ ++
Sbjct: 327 FKGYGVAPASKADYAFVLHGLYHLD----KAGTMAIVLPHGVLF--RSAS-EGKIRKNII 379

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           +N+L++ ++ LP++LF+ T+I T + +   R  E R+ K V  I+A++ +   +N+ K  
Sbjct: 380 DNNLLDTVIGLPSNLFYGTSIPTCVLVFKGR--EARKNKDVLFIDASNEFEKGKNQNK-- 435

Query: 442 RIINDDQRRQILDIYVSREN 461
             +  D   +I+D Y +R++
Sbjct: 436 --LTPDNINKIIDTYHNRQD 453


>gi|291288454|ref|YP_003505270.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885614|gb|ADD69314.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 525

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ I  F S+      +F TP+ VV L   ++           P   R +YDP 
Sbjct: 157 LLGRVYEYFIGMFASKEGRSGGEFYTPQSVVQLLVEMI----------EPYKGR-VYDPC 205

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +     + G   ++  I V +GQE    T  +    + IR +E++      
Sbjct: 206 CGSGGMFVQSEKFAEEHGG--RLRDISV-YGQEYNATTWRLAKMNLAIRGIEAN------ 256

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T + DL    +  + L+NPPF    W  +K       KN    R+  G P  +
Sbjct: 257 LGAEWADTFTNDLHKDLKSDFILANPPFNMSDWGGNK------LKNDV--RWKYGTPPDN 308

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H  +   L PNG   A  VL++  + +    SGE EIR+ ++E DL++ ++A
Sbjct: 309 NANYAWIQHFIH--HLAPNG--VAGFVLANGSMSSNT--SGEGEIRKNIIEADLVDCMIA 362

Query: 393 LPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF+ T I   LW L+  K +    ER+G+   I+A  +    R E +  R++  + 
Sbjct: 363 LPGQLFYTTQIPVCLWFLARNKGKNGHRERKGETLFIDARKMG---RLEDRVHRVLVPED 419

Query: 449 RRQILDIY 456
            ++I   Y
Sbjct: 420 IQKIASTY 427


>gi|225871247|ref|YP_002747194.1| type I restriction-modification system M protein [Streptococcus
           equi subsp. equi 4047]
 gi|225700651|emb|CAW95219.1| type I restriction-modification system M protein [Streptococcus
           equi subsp. equi 4047]
          Length = 514

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 39/268 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + S   +   +F TP+ V  L   +++     L K+    I  +YDP 
Sbjct: 173 LFGDAYEFLISNYASNAGKSGGEFFTPQSVSRLLARIVM-----LGKDEKNKINKIYDPA 227

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A        + H I      +GQE+   T+ +    M +  +  D      
Sbjct: 228 CGSGSLLLQAKKQF----TEHIIEDGF--YGQEINMTTYNLARMNMFLHNINYDKF---- 277

Query: 274 KNIQQGST-LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G+T L       K F   +SNPP+  KW    D            RF P   L  
Sbjct: 278 -SIERGNTLLDPKHGNDKPFDAIVSNPPYSIKWVGSDDPTLINDD-----RFAPAGILAP 331

Query: 331 ISDGSMLFLMH----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            S     F+MH    L+NK        GRAAIV      + G A   E +IR++L++ + 
Sbjct: 332 KSKADFAFIMHSLSYLSNK--------GRAAIVTFPGIFYRGGA---EQKIRQYLVDGNF 380

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRK 414
           +E ++ LP +L F T+IAT + IL+  K
Sbjct: 381 VETVIQLPDNLLFGTSIATCILILAKNK 408


>gi|154496690|ref|ZP_02035386.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC
           29799]
 gi|150273942|gb|EDN01042.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC
           29799]
          Length = 524

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 140/324 (43%), Gaps = 57/324 (17%)

Query: 117 DFDFSSTIARLE-KAGLLYKICKNFSGIELHPD-------TVPDRVMSNIYEHLIRRFGS 168
           D++  + +  L+ K  +L  + ++F  + L P         VP  V+ + YE++I +F S
Sbjct: 116 DYNSENALGTLDHKKAILRDLLEDFESLSLRPSEIEVKAGQVPADVIGDAYEYMIGQFAS 175

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A  F TP  V  +  A ++D         PG    +YDPTCG+G  L  A     
Sbjct: 176 MAGKKAGSFYTPAAVSEI-MARIVDV-------QPG--ERVYDPTCGSGSLLIKAAKK-- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               + K   I   +GQE+   + A+    M I  +     RD    I  G TL+  LF 
Sbjct: 224 ---QNSKEVSI---YGQEVNGSSVAMAKMNMYIHEI-----RD--AKIAWGDTLANPLFL 270

Query: 289 GKR-----FHYCLSNPPFGK-KWE-----------KDKDAVEKEHKNGELGRFGPGLPKI 331
                   F   ++N PF K KW            K K   + E    +  RF  G+P  
Sbjct: 271 DSDGNLLLFDAIVANMPFSKDKWASGFNPGGESSGKGKKEFKMEASLDKFHRFDWGVPPA 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S G   FL+H+   L +     GR A V     LF G A   E  IR+ ++E +L++A++
Sbjct: 331 SKGDWAFLLHMIASLSV----NGRIAAVAPHGVLFRGAA---EGRIRQKVIEENLLDAVI 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKT 415
            LP +LF+ T+I   + +    +T
Sbjct: 384 GLPENLFYGTSIPACILVFKKNRT 407


>gi|325997725|gb|ADZ49933.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2017]
          Length = 495

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 148/324 (45%), Gaps = 54/324 (16%)

Query: 109 DNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYE 160
           +N K +F D D       SS   R+EK   L KI +   G++L  +  +  D V  + YE
Sbjct: 193 ENVKGLFADLDVNSNKLGSSHQNRVEK---LTKILQAIGGMQLGDYQQSGID-VFGDAYE 248

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG+G  L
Sbjct: 249 YLMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCGSGSLL 300

Query: 221 TDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQ 278
                 + D         +L  + GQE+   T+ +C   M +  +      + SK +I  
Sbjct: 301 LQFSKVLGD-------KNVLKGYFGQEINLTTYNLCHINMFLHDI------NYSKFHIAH 347

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAV----EKEHKNGELGRFGPGLPKISD 333
           G TL          F   +SNPP+  KW  D + +    E+  K G L       PK + 
Sbjct: 348 GDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMNDERFSKAGALA------PK-NA 400

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L    +  G AAIV     L+ G A   E +IR +L++ + I+ ++AL
Sbjct: 401 ADLAFTMHMLSYL----SNQGAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIAL 453

Query: 394 PTDLFFRTNIATYLWILSNRKTEE 417
           P +LFF TNIAT + +L   K ++
Sbjct: 454 PENLFFGTNIATCILVLKRNKKDD 477


>gi|325066640|ref|ZP_08125313.1| type I restriction-modification system, M subunit [Actinomyces oris
           K20]
          Length = 519

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 206/477 (43%), Gaps = 63/477 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVRE--------KY 59
           A+L   IW+ A DL G     DF   +L F   R + E   E   +  RE        ++
Sbjct: 8   AALHQTIWRVANDLRGSLDGWDFKAYVLGFLFYRFISENLTEYINAGEREAGDPDFDYRF 67

Query: 60  LAFGGSNIDLESFVKVAGY------SFYNTSEYSL--STLGSTNTR--NNLESYIASFSD 109
           L+   +    E  V+  G+       F N  E +     L  T +R   ++E+       
Sbjct: 68  LSHADAEGAREGIVEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFKSIEASATGTGS 127

Query: 110 NA--KAIFEDFDFSST-IARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +  + +F+D D +ST + R   ++   L ++ +    ++L           + YE+L+ 
Sbjct: 128 ESDLRGLFDDVDVNSTKLGRTVAQRNDKLTRLMQAIGDLDLSYGESSIDTFGDAYEYLMT 187

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S   +   +F TP++V  +   + +     + K S   +  +YDP CG+G  L   +
Sbjct: 188 MYASNAGKSGGEFFTPQEVSEVLARITV-----MGKTS---VNRVYDPACGSGSLL---L 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G  +         GQE+   T+ +C   M +  +      D S  I  G TL+ 
Sbjct: 237 KFAKVLGKDNVRGGFF---GQEINLTTYNLCRINMFLHDINF---ADFS--IAHGDTLTD 288

Query: 285 DL-FTGKRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
              +  + F   +SNPP+  KW  KD  A+  + +    G   P     S   + F MH+
Sbjct: 289 PAHWDDEPFEAIVSNPPYSTKWIGKDDPALINDPRFSPAGVLAPK----SKADLAFTMHM 344

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L +     G AAIV     LF G A   E++IR++L+E + ++A++ LP DLFF TN
Sbjct: 345 LSWLAVD----GTAAIVEFPGVLFRGGA---EAKIRQYLVEYNYVDAVIQLPPDLFFGTN 397

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           I T + +L   K +     V  ++A+  +  +R + K +  ++ + ++ IL+    R
Sbjct: 398 IRTCVIVLKKSKQD---NNVLFVDASKQF--VREDNKNK--LSAENQKMILETLAKR 447


>gi|227533895|ref|ZP_03963944.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188457|gb|EEI68524.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 532

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 160/355 (45%), Gaps = 46/355 (12%)

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +FED D  S        ++  ++  + K  S ++L      D ++ + YE+LI +F S+
Sbjct: 132 GLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQNTND-ILGDAYEYLIGQFASD 190

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  L T +      A+  +      T+YDPT G+G  L +A  +   
Sbjct: 191 SGKNAGEFYTPQSVSRLITQI------AMHGKEDVRGFTIYDPTMGSGSLLLNARRY--- 241

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LF 287
             S+ ++   +   GQEL   T+ +    M++  +  +     ++++    TL +D  + 
Sbjct: 242 --SNERLS--INYFGQELNTSTYNLARMNMILHGVPIN-----NQHLHNADTLDQDWPIE 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
               F   + NPP+   W   K   E +       RF   GL   S     FL+H    L
Sbjct: 293 EPTNFDAVVMNPPYSAHWRPSK-GTEND------PRFVSYGLAPKSKADFAFLLHGYYHL 345

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G   IVL    LF G A   E  IR+ LLEN  I+ ++ LP ++FF T+I T 
Sbjct: 346 K----DTGVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVIGLPANIFFNTSIPTT 398

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + +L   +T      V  I+A+  +   +N+      +  D  ++IL+ Y++R++
Sbjct: 399 VTVLKKSRTTR---DVLFIDASKEFEKAKNQNH----LTGDNIQKILETYINRKD 446


>gi|187729921|ref|YP_001853815.1| type I restriction-modification system [Vibrio tapetis]
 gi|182894480|gb|ACB99645.1| type I restriction-modification system N6-methylase [Vibrio
           tapetis]
          Length = 864

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 193/425 (45%), Gaps = 75/425 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI +F +   + A +F TP +V  L + ++ D      K+   +   +YDPT
Sbjct: 164 VLGFIYEYLISQFAANAGKKAGEFYTPHEVSVLMSEIMADH----LKDREKI--QIYDPT 217

Query: 214 CGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  L +    V +  G  + I        QEL+  T+ +    + +R +   P   +
Sbjct: 218 SGSGSLLINIGQSVENRLGGENNIRYF----AQELKKNTYNLTRMNLFMRGIL--PNDII 271

Query: 273 SKNIQQGSTLSKD--LFTGK-----RFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELG 322
           ++N     TL  D  + + K     R    +SNPP+ +KW+   KDKD            
Sbjct: 272 TRN---ADTLEDDWPIDSNKTHEPLRVDAVVSNPPYSQKWDPEFKDKDP----------- 317

Query: 323 RFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           R+ P GL   +     FL+H  +   + P+G     IVL    LF G     E +IR  L
Sbjct: 318 RYSPFGLAPKTKADYAFLLH--DLYHIKPDG--IMTIVLPHGVLFRG---GDEGKIRENL 370

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E + I+AI+ LP ++FF T I T + +L   +  +    V +I+A+  +     EGK  
Sbjct: 371 IEKNHIDAIIGLPANVFFGTGIPTIVLVLKQTRNND---DVLIIDASKGFVK---EGKNN 424

Query: 442 RIINDDQRRQILDIYVSRENG-KFSRMLDYRTF---GYRRIKVLRPLRMSFILDKTGLAR 497
           ++   D +R I+D  VSR++  KFS +++ +T    GY        L +   +D +  A 
Sbjct: 425 KLRACDIKR-IVDTVVSRQSQLKFSALVNRQTIRENGYN-------LNIPRYVDSSDEAE 476

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI---KSNEAKTLKVKASK 554
                +W     ++ S + DI    +  + PY  A   +K S+    S+E   L V+  K
Sbjct: 477 -----SW----DIYASMFGDIPNSELAALSPYWQAMPSLKASLFTATSSEYSALSVEDVK 527

Query: 555 SFIVA 559
           + I A
Sbjct: 528 AAITA 532


>gi|88854447|ref|ZP_01129114.1| type I restriction-modification system DNA methylase [marine
           actinobacterium PHSC20C1]
 gi|88816255|gb|EAR26110.1| type I restriction-modification system DNA methylase [marine
           actinobacterium PHSC20C1]
          Length = 522

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 115/490 (23%), Positives = 197/490 (40%), Gaps = 69/490 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLA 61
           A L   IW+ A DL G     DF   +L     R +   L    +    K       Y +
Sbjct: 11  AELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYVNTGERKAGSADFDYRS 70

Query: 62  FGGSNIDLESFVKVAGYSFY-------------NTSEYSLSTLGSTNTRNNLESYIASFS 108
              S+ +      V+   FY                + +L+    T  RN   S + + S
Sbjct: 71  LSDSDAEFGRQETVSEKGFYILPSELFVNVQHKAQQDENLNETLHTVFRNIEGSAVGTDS 130

Query: 109 -DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYEHL 162
            D+ K +F D D +S       A    K+ K    I   P     D   D +  + YE+L
Sbjct: 131 EDDLKGLFHDLDVNSPKLGQTVAKRNEKLVKLLDAIGDLPLGNFDDNTID-LFGDAYEYL 189

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++ + S   +   ++ TP++V  L   + +             +  +YDP  G+G  L  
Sbjct: 190 MQMYASSAGKSGGEYYTPQEVSELLARITV--------VGKTEVNKVYDPAVGSGSLLLK 241

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +               +GQE+   T+ +    M +  +  +       N+  G TL
Sbjct: 242 FAKVLGKENVRQGF------YGQEINLTTYNLARINMFLHDVNYEKF-----NLAHGDTL 290

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
           +     G   F   +SNPP+  KW+ D + +          RF P   L   S   + F 
Sbjct: 291 TDPAHWGDEPFEAIVSNPPYSIKWDGDANPLLINDP-----RFAPAGVLAPKSKADLAFT 345

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+ + L +     G AAIV     L+ G A   E++IR++L++N+ ++A++ LP DLFF
Sbjct: 346 MHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVDAVIQLPPDLFF 398

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IAT + +L   K +     V  I+A+  +    N G  +  + +  + +ILD + +R
Sbjct: 399 GTTIATCIIVLKKSKVDN---SVLFIDASAEF----NRGGSKNKLAEANQAKILDTFTTR 451

Query: 460 -ENGKFSRML 468
            +   F++++
Sbjct: 452 VDTAHFAKLV 461


>gi|54308990|ref|YP_130010.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium
           profundum SS9]
 gi|46913420|emb|CAG20208.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium
           profundum SS9]
          Length = 500

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 141/319 (44%), Gaps = 51/319 (15%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +L++  A    N +       FS     ++   LL ++    + I+   DT    +  +I
Sbjct: 89  DLKNLTAPIDKNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDTDERHLFGDI 147

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   S  + G  +F TPR +      +            P +  ++ DP CGTGG
Sbjct: 148 YEQILKDLQSAGNAG--EFYTPRAITKFIVKVT----------DPKLGESIMDPACGTGG 195

Query: 219 FLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           FL  + +HV +      G H  +   +  HG E +   H +C   ML+  +E      + 
Sbjct: 196 FLACSFDHVQNNYVKSAGDHKTLQSQI--HGVEKKQLPHLLCTTNMLLHGIE------IP 247

Query: 274 KNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+ G+TL+K L +  ++    ++NPPFG     ++D +EK           P   +  
Sbjct: 248 VQIKHGNTLAKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTR 295

Query: 333 DGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEA 389
           + + LFL  +   L  P NG  GGRAA+VL    LF    G G +++I++ L E   +  
Sbjct: 296 ETADLFLQLIIEILASPVNGQKGGRAAVVLPDGTLF----GEGVKTKIKKMLTEECNLHT 351

Query: 390 IVALPTDLF-----FRTNI 403
           IV LP  +F      +TNI
Sbjct: 352 IVRLPNGVFNPYTGIKTNI 370


>gi|298528585|ref|ZP_07015989.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512237|gb|EFI36139.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 516

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 139/306 (45%), Gaps = 42/306 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ K  + +   P  +       IYE+ +  F     +   +F TP  +V L   ++
Sbjct: 128 LLKELLKTMNSV---PMDIEGDAFGKIYEYFLGNFARAEGQKGGEFFTPTAIVKLIVGII 184

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPE 250
                      P   R +YDP CG+GG    + + V +   H K P   L  +GQE   E
Sbjct: 185 ----------EPYHGR-IYDPACGSGGMFVQSAHFVEE---HRKNPGSELSIYGQEKVAE 230

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDK 309
           T  +    + +  L  D        I+QG+   +DL   K +F Y ++NPPF      + 
Sbjct: 231 TVRLGKMNLAVHGLGGD--------IRQGNAYYEDLHNSKAKFEYVMANPPF------NV 276

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V+K+    +  RF  GLPK  + + L++    + L    N  GRA  V+++S      
Sbjct: 277 DRVDKDRLKDD-PRFPFGLPKPDNANFLWIQMFYSAL----NDKGRAGFVMANSA---SD 328

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-NRKTEERRGKVQLINAT 428
           A   E +IR+ L+E++ ++ +VA+ ++ F+   +   LW L   +K  +R  KV  I+A 
Sbjct: 329 ARGSELDIRKQLIESNSVDVMVAVGSNFFYTVTLPCTLWFLDRGKKNTDRADKVLFIDAR 388

Query: 429 DLWTSI 434
            ++  I
Sbjct: 389 HIYRQI 394


>gi|148927363|ref|ZP_01810894.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147887262|gb|EDK72723.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 347

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 141/318 (44%), Gaps = 39/318 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L  +F S+   GA  + TPR ++   T  L           P   +T+ D  
Sbjct: 20  VKGEIYEGLFEKFASDTKTGAGQYFTPRPLIQAMTECL----------RPEPSKTMADFA 69

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269
            GTGGF     +++A+    +K     + +    G E+ P T  +C+  + +  +     
Sbjct: 70  AGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTFTGNEIVPATARLCLMNLFLHNIGD--- 126

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE---KDKDAVE-KEHKNGELGRFG 325
            D    I    +L+ D  +GKRF Y L NPPFGKK      ++D  + KE    E   F 
Sbjct: 127 MDSKPPIHLTDSLASD--SGKRFDYILMNPPFGKKSSITVSNEDGTQSKESLTYERQDF- 183

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S+  + F+ H+ ++L++     G+AA+++  + LF G  G+GE+ IR+ LL+  
Sbjct: 184 --WTTTSNKQLNFVQHICSQLKVD----GKAAVIVPDNVLFEG--GAGET-IRKKLLQTT 234

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I  I+ LPT +F+   +   +    NR   +       +   D+W       +   ++ 
Sbjct: 235 EIHTILRLPTGIFYANGVKANVIFFDNRPASKE------VQTKDVWVYDMRTNQHFTLLT 288

Query: 446 DDQRRQILDIYVSRENGK 463
            D R   +++ +  + G+
Sbjct: 289 ADGRCIPIEVGLGEKTGR 306


>gi|212716798|ref|ZP_03324926.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660276|gb|EEB20851.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM
           16992]
          Length = 853

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 210/491 (42%), Gaps = 72/491 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSA--VREKYLAFGGSN 66
            LA+ IW++A  +    +  ++   IL F   + L E  L   +++    +        N
Sbjct: 5   QLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETELMRLKASDFTEDDLPQLTEDN 64

Query: 67  IDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D+  FV+      +A  + ++T     +    +N R+ L ++  + +   K +F+   F
Sbjct: 65  PDIVEFVQGECGYFIAYDNLFSTWIKQGNDFEISNVRDALSAFSRNINPAHKKVFDGI-F 123

Query: 121 SSTIARLEKAGL----LYKICKNFSGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVS 171
            +    L K G       K  ++   I L  D   D      V+  IYE+LI  F +   
Sbjct: 124 DTLQTGLSKLGTDARSQSKAARDL--IYLIKDIPMDGRQDYDVLGFIYEYLISNFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + ++     A   +    I+ +YDPT G+G  L      VA   
Sbjct: 182 KKAGEFYTPSEVSQLMSEIV-----AWHLQGREQIK-IYDPTSGSGSLLIHIGQAVARRN 235

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKD---- 285
            +   P  ++ + QEL+  T+ +    +++R +       L  NI  + G TL  D    
Sbjct: 236 GN---PDSIMYYAQELKENTYNLTRMNLVMRGI-------LPDNIVARNGDTLEDDWPWF 285

Query: 286 -LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                K   Y        +SNPP+ + W    D  +KE       RF  G+   S     
Sbjct: 286 DTLENKEETYNPLFVDAVVSNPPYSQNW----DPTDKEID----PRFSYGIAPKSKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L       G   IVL    LF G     E +IR+ L+EN  I+AI+ LP ++
Sbjct: 338 FLLHDLYHLR----ADGIMTIVLPHGVLFRG---GEEGQIRKNLIENRHIQAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L  ++ ++R   V +++A+  +     +GK  ++   D +R +  +  
Sbjct: 391 FFGTGIPTIVMVLRKKRDDDR---VLIVDASKHFIK---DGKNNKLQASDIKRIVDVVSN 444

Query: 458 SRENGKFSRML 468
           +R   KFSR++
Sbjct: 445 NRTVPKFSRLV 455


>gi|321310228|ref|YP_004192557.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
 gi|319802072|emb|CBY92718.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
          Length = 513

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 142/313 (45%), Gaps = 41/313 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE LI R+ S   +   +F TP  V  L + +++   + + K        +YDPTC
Sbjct: 174 LGDVYEFLISRYASNGGKKGGEFYTPARVSELLSKIVIFEKEKVSK--------VYDPTC 225

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           G+G  L   M     D G        +  +GQE    T+ +C   M I  +  +      
Sbjct: 226 GSGSLLLKFMKMYGRDKG--------VKVYGQENNVTTYNLCRMNMFIHGMSFNDF---- 273

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +I  G TL +   T +   F   +SNPP+  KW+ D D   K+  N    R   G    
Sbjct: 274 -DICLGDTLGEPCLTHEEGMFDVVISNPPYSLKWKSDGD---KQIANDSRFRDQGGFAPK 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 F+ H  ++L+      G AAIV ++  L   R G  E  IR++L+EN+ + A++
Sbjct: 330 DKADFAFIQHALSRLKKD----GVAAIVCATGIL--TRMGR-EENIRKFLVENNYVHAVI 382

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +  DLF+ T I T + +L   K ++   KV  I+AT  +    N+      ++ +   +
Sbjct: 383 HMAKDLFYGTGIETVILVLKKEKLDD---KVLFIDATQKFIKSSNKND----LSLENVEE 435

Query: 452 ILDIYVSRENGKF 464
           IL +Y  R++ +F
Sbjct: 436 ILRLYGDRKSEEF 448


>gi|297617310|ref|YP_003702469.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145147|gb|ADI01904.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 523

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 142/315 (45%), Gaps = 43/315 (13%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  RL+   L+  + K FS I   P  V   V  N+YE+ +  F     +   +F TP  
Sbjct: 122 TYTRLDNDTLI-ALLKTFSEI---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFYTPTS 177

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++           P   R L DP CG+GG    +   V +   H K P   + 
Sbjct: 178 LVKLIVEVI----------EPYRGRIL-DPACGSGGMFVQSARFVQN---HKKNPSSEIS 223

Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
            +GQE   ET  +C   + +  L  D        I+Q +T  +++     RF + ++NPP
Sbjct: 224 IYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCIGRFDFVMANPP 275

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F      + D V+KE K  +  R+  GLP + + + +++    + L    N  GRA  V+
Sbjct: 276 F------NVDGVDKE-KIKDDPRYPFGLPTVDNANYIWIQEFYSAL----NDTGRAGFVM 324

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ++S      A   E EIR+ L+++ +++ ++ +  + F+   +   LW     K +  RG
Sbjct: 325 ANSA---SDARGSELEIRKKLIQDRVVDVMITIGPNFFYTVTLPCTLWFFDKGKRQTERG 381

Query: 421 -KVQLINATDLWTSI 434
            KV  I+A +++  +
Sbjct: 382 NKVLFIDARNIYRQV 396


>gi|288926748|ref|ZP_06420659.1| type I restriction-modification system, M subunit [Prevotella
           buccae D17]
 gi|288336478|gb|EFC74853.1| type I restriction-modification system, M subunit [Prevotella
           buccae D17]
          Length = 515

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 186/447 (41%), Gaps = 68/447 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L   IWK A ++ G     DF + +L  TL  R             ++ + +  S  ++
Sbjct: 9   ALQTAIWKIANEVRGAVDGWDFKQFVLG-TLFYRFISENFTNFIEAGDESVNYAQSPDEV 67

Query: 70  ------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-------------N 110
                 +  +K  GY  Y  S+  ++     N   NL + +A+  D             +
Sbjct: 68  ITPEIKDDAIKTKGYFIY-PSQLFVNIAKDANGNPNLNTDLAAIFDAIESSASGYASEHD 126

Query: 111 AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164
            K +F DFD +S   RL     EK   L  + K    ++    +     +  + YE LI 
Sbjct: 127 IKGLFADFDTTSN--RLGNTVEEKNKRLAAVIKGVESLDFSNFENNEIDLFGDAYEFLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP++V  L   L +   D++ K        +YDP CG+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQNVSSLIARLAMYGQDSVNK--------IYDPACGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLS 283
                    H I       GQE+   T+ +    M +  +      + +K +I  G+TL 
Sbjct: 237 KQF----DAHLIEEGFF--GQEINHTTYNLARMNMFLHNI------NYAKFDIALGNTLL 284

Query: 284 KDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
              +  ++ F   +SNPP+   W    D            RF P   L   S     F++
Sbjct: 285 NPQYGDQKPFDAIVSNPPYSVNWVGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++LP +LF+ 
Sbjct: 340 HALSYL----SARGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINA 427
           T+IA  + +LS  KT+ +    Q I+A
Sbjct: 393 TSIAVNILVLSKHKTDTQ---TQFIDA 416


>gi|260061349|ref|YP_003194429.1| type I restriction-modification system DNA methylase [Robiginitalea
           biformata HTCC2501]
 gi|88785481|gb|EAR16650.1| type I restriction-modification system DNA methylase [Robiginitalea
           biformata HTCC2501]
          Length = 531

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 194/480 (40%), Gaps = 76/480 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS----AVREKYLAFGGSNIDLE 70
           +W  A +L G      +   +LP   L+ +    E  R     A  ++   + G + D  
Sbjct: 14  LWNAANELRGAVAENQYKDYVLPLIFLKHMSERYEMRRDELMDAFEDEASNYYGLSEDDR 73

Query: 71  SFVKVAGYSFYNTSEYSLST------LGSTNTRNN-----------LESYIASFSDNAKA 113
           ++V      + + + Y +        L     R+N           L+  + +F    K 
Sbjct: 74  NYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDTLDETLGAFRPELKG 133

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I       S +   +  GL+  +      ++ +P++    ++  +YE+ I +F      G
Sbjct: 134 ILPRIFVKSQLTSRQVGGLINLLSHPKLSVKENPES---DILGRVYEYYIGKFAIAEGSG 190

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  F TP  +V L   ++ +P              ++D  CG+GG    ++  +   G  
Sbjct: 191 AGQFFTPGSIVRLMVEMI-EPYKG----------KIFDAACGSGGMFVQSLKFLEAHGGD 239

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +   I   +GQE    T  +C   + +R        DLS +++ G +L +D F      
Sbjct: 240 KRNISI---YGQERYSGTLRLCKMNLALR--------DLSFDVRLGDSLLQDKFPDLEAD 288

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS------MLFLMHLANKLE 347
           Y L NPPF       +D  +K+ +      FGP     +DG+        F  HL+N   
Sbjct: 289 YILVNPPFNVSQWHPEDLPDKDPR-----LFGPKEEFTTDGNANYMWMQTFWSHLSNT-- 341

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G AA+V+++  +  G    GE  +R+ +++  +I+AIV LP  LF  T I   +
Sbjct: 342 ------GTAAVVMANGAMTTG--NKGEKNVRQHMVDEGMIDAIVRLPDKLFLTTGIPACI 393

Query: 408 WILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +ILS  +        ER+ ++  I+ + +    R E ++ R+ ++    + ++ Y +  N
Sbjct: 394 FILSKNRDGKDGVHRERKEEILFIDMSKMG---RMESRRLRVFDEADLIKAVEAYHAWRN 450


>gi|304440530|ref|ZP_07400417.1| type I restriction-modification system DNA-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371008|gb|EFM24627.1| type I restriction-modification system DNA-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 528

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 145/333 (43%), Gaps = 53/333 (15%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
           D+ K +FED D  S   RL     EK   L  I    + I        D     + YE+L
Sbjct: 139 DDIKGLFEDVDTKSN--RLGGNVPEKNKRLADILTGIAEINFGEFQKNDIDAFGDAYEYL 196

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + S   +   +F TP+ V  L   +++D            I   YDPTCG+G  L  
Sbjct: 197 ISNYASNAGKSGGEFFTPQTVSKLLARIVMD--------GKTSINKAYDPTCGSGSLLLQ 248

Query: 223 AMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                  H+ D G            GQE+      +    M +  +  +     + +I++
Sbjct: 249 MKKQFEEHIIDEGFF----------GQEINMTNFNLARMNMFLHNVNYN-----NFSIKR 293

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL +     ++ F   +SNPP+  KW  D D       N E  RF P   L   S   
Sbjct: 294 GDTLLQPKHKDEKPFDAIVSNPPYSIKWIGDADPT---LINDE--RFAPAGKLAPKSYAD 348

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      +  R G+ E  IR++L++N+ I+ ++ LP 
Sbjct: 349 YAFILHSLSYL----SSKGRAAIVCFPGIFY--RKGA-EKTIRQYLVDNNFIDCVIQLPE 401

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           +LFF T+IAT + +++  KTE    K+  I+A+
Sbjct: 402 NLFFGTSIATCILVMAKNKTE---NKILFIDAS 431


>gi|282907755|ref|ZP_06315596.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328366|gb|EFB58638.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 270

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 42/282 (14%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L              K
Sbjct: 2   EFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV----------GK 43

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   
Sbjct: 44  ETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAV 98

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L+      G 
Sbjct: 99  IANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD----DEGT 149

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T   IL  +K
Sbjct: 150 MAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CILVFKK 204

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 205 CRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 242


>gi|326319451|ref|YP_004237123.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376287|gb|ADX48556.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 520

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 128/283 (45%), Gaps = 37/283 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            V   V+  +YE+ +  F S   +    F TP  +V    A+L          +P   + 
Sbjct: 159 AVARDVLGQVYEYFLGMFASAEGKRGGQFYTPASIVKTLVAVL----------APHHGK- 207

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR +    
Sbjct: 208 VYDPCCGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQEANPTTWRLAAMNLAIRGI---- 260

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D +   +   T + +     R  Y L+NPPF    W     A +         R+  G
Sbjct: 261 --DFNLGREPADTFTHNQHPDLRADYILANPPFNISDWWHGSLAGD--------ARWHYG 310

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+ + L+  P G  RA IVL++  + + +  + E  IR  +++ D++
Sbjct: 311 DPPQGNANYAWLQHMLHHLK--PTG--RAGIVLANGSMSSSQ--NNEGVIRAAMVDADVV 364

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           E +VALP  LFF T I   LW LS RK  +R+G+V  I+A  L
Sbjct: 365 EVMVALPGQLFFNTQIPACLWFLSQRK--KRKGEVLFIDARKL 405


>gi|282919573|ref|ZP_06327308.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317383|gb|EFB47757.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 318

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 42/282 (14%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L              K
Sbjct: 2   EFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRV----------GK 43

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   
Sbjct: 44  ETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAV 98

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPP+  KW  D      E  +G    +G   PK S     F+ H+ + L+      G 
Sbjct: 99  IANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD----DEGT 149

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A+VL    LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T   IL  +K
Sbjct: 150 MAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CILVFKK 204

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             ++   V  I+A++ +     +GK +  ++D Q  +I+D Y
Sbjct: 205 CRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIIDTY 242


>gi|313664976|ref|YP_004046847.1| type I restriction-modification system, M subunit [Mycoplasma
           leachii PG50]
 gi|312949714|gb|ADR24310.1| putative type I restriction-modification system, M subunit
           [Mycoplasma leachii PG50]
          Length = 355

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 159/328 (48%), Gaps = 46/328 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F S   + A +F TP +V  L + ++     A   ++  +I ++YDPT
Sbjct: 59  ILGFIYEYLIAQFASSAGKKAGEFYTPHEVSDLMSKIV-----AHHLKNRSII-SVYDPT 112

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L   +N   +   ++K    +  + QEL+ ET  +    +++R +         
Sbjct: 113 SGSGSLL---LNIGDEFKKYNKGSSPVSYYAQELKTETFNLTRMNLIMRNINPS-----E 164

Query: 274 KNIQQGSTL--------SKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            ++++G TL        ++DL T KR      +SNPP+ + W  +K   +  +       
Sbjct: 165 IHVRRGDTLEQDWPIFENEDLSTYKRLTVDAVVSNPPYSQSWNSEKHTNDPRY------- 217

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+   +     FL+H  +   + P G    AIVL    LF G +   E +IR+ L+E
Sbjct: 218 VEYGIAPKTKADYAFLLH--DLYHIDPEG--IMAIVLPHGVLFRGNS---EKQIRQKLIE 270

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              I+ I+ LP+++FF T I T + IL   K ++    +  ++A+ L+     EGK  + 
Sbjct: 271 KGQIDTIIGLPSNMFFGTGIPTIIMIL---KKQKPINDILFVDASQLYIK---EGKNNK- 323

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDY 470
            +  Q ++I D+  +R E  KFSR++ +
Sbjct: 324 FSQSQIKKIADVVNNRIEVEKFSRIVKF 351


>gi|239621716|ref|ZP_04664747.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515591|gb|EEQ55458.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 855

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 144/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 ARNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEAG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G  AIVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMAIVLPHGVLFRG---GEEGAIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +T    EGK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDH---VLVVDASKYFTK---EGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDAVTGNRDIDKFSRLV 455


>gi|95929209|ref|ZP_01311953.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684]
 gi|95134707|gb|EAT16362.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684]
          Length = 550

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           H       ++ ++YE+ + +F     +    F TP+ +V L   +L           P  
Sbjct: 186 HASLQAKDILGHVYEYFLGQFALAEGKKGGQFYTPKSIVSLIVEML----------QPFS 235

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            R +YDP  G+GGF   +   + + G   K+  + + +GQE    T  +    M+IR L 
Sbjct: 236 GR-VYDPAMGSGGFFVQSEQFIKEHGG--KLGNVSI-YGQEYNHTTWQLAAMNMVIRGL- 290

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE---KDKDAVEKEHKNGEL 321
                D +   +  +T + D     R  + ++NPPF  K+W+   KD D           
Sbjct: 291 -----DFNFGKEPANTFTNDQHPDLRADFVMANPPFNMKEWDTGVKDDDP---------- 335

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P   + +  +L H+     L P  GG   ++L++  + +    + E +IRR L
Sbjct: 336 -RWHYGKPPSGNANFAWLQHML--YHLAP--GGSMGLLLANGSMSSNT--NTEGDIRRAL 388

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDL 430
           +E+DL+E +VALP  LF  T I   +W L+  K       +R GKV  I+A +L
Sbjct: 389 VEHDLVECMVALPGQLFTNTQIPACIWFLTRNKKARGNLADRSGKVLFIDARNL 442


>gi|19881311|gb|AAM00901.1|AF486570_2 HsdM [Campylobacter jejuni subsp. jejuni ATCC 33560]
 gi|19698527|gb|AAL93191.1| type I restriction enzyme M protein [Campylobacter jejuni]
          Length = 509

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 156/356 (43%), Gaps = 45/356 (12%)

Query: 112 KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           K +F+D D  S        E+   + KI +  S ++LH +        + YE L+  + S
Sbjct: 125 KGLFDDLDLYSNKLGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMYAS 184

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP++V  L   + L  +       P  +   YDP CG+G  L      + 
Sbjct: 185 NAGKSGGEFFTPQEVSKLLVEITLYNN-----AKPNKV---YDPACGSGSLLLQYKKSL- 235

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKD 285
                 K  P     GQE+   T+ +    M +  +    R D    I  G TL   S++
Sbjct: 236 ------KSDPKKGYFGQEINITTYNLARMNMFLHDVNY-TRFD----IAHGDTLINPSEN 284

Query: 286 LFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               + F   +SNPP+  KWE KD   +  + +  + G   P     S   + F+MH  +
Sbjct: 285 HKELEPFDAIVSNPPYSTKWEGKDNALLINDERFNKAGVLAP----TSKADLAFVMHSLS 340

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L    +  G AAIV     ++ G A   E +IR++++E + ++ +++L  +LFF T+IA
Sbjct: 341 WL----SEKGSAAIVCFPGVMYRGGA---ERDIRKYMIEENFVDCVISLAPNLFFGTSIA 393

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             + +L   KT++       INA + +  + N    + +++ +    IL +Y  R+
Sbjct: 394 VCILVLRKNKTDKN---TLFINANEEFIKVTN----KNMLSKENLENILKLYKDRK 442


>gi|154487133|ref|ZP_02028540.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis
           L2-32]
 gi|154084996|gb|EDN84041.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis
           L2-32]
          Length = 853

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 149/329 (45%), Gaps = 51/329 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++     A   +    I+ +YDPT
Sbjct: 164 VLGFIYEYLISNFAANAGKKAGEFYTPSEVSQLMSEIV-----AWHLQGREQIK-IYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      VA     +  P  ++ + QEL+  T+ +    +++R +       L 
Sbjct: 218 SGSGSLLIHIGQSVA---RRNGNPNSIMYYAQELKENTYNLTRMNLVMRGI-------LP 267

Query: 274 KNI--QQGSTLSKD-----LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNG 319
            NI  + G TL  D         K   Y        +SNPP+ + W    D  +KE    
Sbjct: 268 DNIVARNGDTLEDDWPWFDTLENKEETYNPLFVDAVVSNPPYSQNW----DPTDKEID-- 321

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              RF  G+   S     FL+H    L       G   IVL    LF G     E +IR+
Sbjct: 322 --PRFSYGIAPKSKADYAFLLHDLYHLR----ADGIMTIVLPHGVLFRG---GEEGQIRK 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L  ++ ++   KV +++A+  +     +GK
Sbjct: 373 NLIENRHIQAIIGLPANIFFGTGIPTIVMVLRKKRDDD---KVLIVDASKHFIK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R   KFSR++
Sbjct: 427 NNKLQASDIKRIVDVVSNNRTVPKFSRLV 455


>gi|153951493|ref|YP_001398800.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938939|gb|ABS43680.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 489

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 158/356 (44%), Gaps = 45/356 (12%)

Query: 112 KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           + +F+D D  S        E+   + KI +  S ++LH +        + YE L+  + S
Sbjct: 105 RGLFDDLDLYSNKLGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMYAS 164

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP++V  L   + L  +       P  +   YDP CG+G  L      + 
Sbjct: 165 NAGKSGGEFFTPQEVSKLLVEITLHNN-----AKPNKV---YDPACGSGSLLLQYKKSL- 215

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKD 285
                 K  P     GQE+   T+ +    M +  +    R D    I  G TL   S++
Sbjct: 216 ------KSDPKKGYFGQEINITTYNLARMNMFLHDVNY-TRFD----IAHGDTLISPSEN 264

Query: 286 LFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               + F   +SNPP+  KWE KD   +  + +  + G   P     S   + F+MH  +
Sbjct: 265 HKELEPFDAIVSNPPYSTKWEGKDNALLINDERFNKAGVLAP----TSKADLAFVMHSLS 320

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L    +  G AAIV     ++  R+G+ E EIR++++E + ++ +++L  +LFF T+IA
Sbjct: 321 WL----SEKGSAAIVCFPGVMY--RSGA-EKEIRKYIIEENFVDCVISLAPNLFFGTSIA 373

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             + +L   KT++       INA + +  + N    + +++ +    IL +Y  R+
Sbjct: 374 VCILVLRKNKTDKN---TLFINANEEFIKVTN----KNMLSKENLENILKLYKDRK 422


>gi|282850456|ref|ZP_06259835.1| type I restriction-modification system, M subunit [Veillonella
           parvula ATCC 17745]
 gi|282579949|gb|EFB85353.1| type I restriction-modification system, M subunit [Veillonella
           parvula ATCC 17745]
          Length = 533

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 196/497 (39%), Gaps = 80/497 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTRSAVR 56
           A ++++ +W  A DL G    + F   ILPF   + L    E               +V 
Sbjct: 6   AQNISSQLWAIANDLRGTMDASSFKDYILPFLFYKYLSIHQEEYLVNSDLVDISDGKSVN 65

Query: 57  EKYLAF---GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDN 110
           E Y       G    L       GY+      ++  T    N     ++ +    +F+ N
Sbjct: 66  EAYKELVEDAGLEACLIDIAGTLGYAINPEDTWASLTESIHNGSVIPSDYQRLFENFNKN 125

Query: 111 A----------KAIFE-----DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           A          + IF      D    ST A   K   L  +      IE   +   D ++
Sbjct: 126 AEINKEAAADFRGIFNYINLGDSGLGSTTAGRTKT--LNAVVTKIDEIEYKDENGKD-IL 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             IYE+LI +F +   +   +F TP +V  +   ++         +S     T+YDPT G
Sbjct: 183 GEIYEYLIGKFAANAGKKGGEFYTPHEVSKILAKIVTGN-----IKSQNDTFTVYDPTMG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L    N + D      +      +GQEL   T+ +    +++  +  +     +  
Sbjct: 238 SGSLLLTVRNELPDGSRQGAVSF----YGQELNTVTYNLARMNLMMHGVTYN-----NMT 288

Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +    TL  D   G         + F   ++NPP+  KW+  +  + K+ +  + G+  P
Sbjct: 289 LNNADTLESDWPDGPDRDGIDRPRSFDAVVANPPYSAKWDNSESKL-KDPRFSDYGKLAP 347

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S     F++H    L    N  G  AIVL    LF G A   E +IR+ ++E + 
Sbjct: 348 A----SKADYAFILHSLYHL----NNEGTMAIVLPHGVLFRGAA---EGKIRQTIIEKNY 396

Query: 387 IEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKR---- 441
           ++A++ LP +LF+ T+I T + +   NR T +    V  I+A++ +   +N+        
Sbjct: 397 LDAVIGLPANLFYGTSIPTTILVFKKNRTTRD----VLFIDASNEFEKGKNQNNLSKENI 452

Query: 442 -RIINDDQRRQILDIYV 457
            +II   Q RQ +D Y 
Sbjct: 453 TKIIETYQNRQDVDKYA 469


>gi|121608535|ref|YP_996342.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121553175|gb|ABM57324.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 519

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 40/290 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D  PD  +   YE+L+R+F     + A +F TP +V  L   +L        +  PG   
Sbjct: 161 DVQPD-FLGRAYEYLLRKFAEGSGQSAGEFFTPTEVGFLMAHIL--------RPRPG--E 209

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T +D  CG+ G L        +     ++P  L   GQEL+ E++AV     +I      
Sbjct: 210 TCHDYACGSAGLLIKLQLVARELDPTSRVP--LQLSGQELQAESYAVAQMNAIIH----- 262

Query: 268 PRRDLSKNIQQGSTLSKDLF---TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              D+   + +G T+    F    GK  R    ++NP + + +  D  A      N    
Sbjct: 263 ---DMEVTLARGDTMINPKFREANGKLRRHDVVVANPMWNQPFAPDLFA------NDPFD 313

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IR 378
           RF   G      G   +L H    L       GRAA+VL +  +  G     E +   IR
Sbjct: 314 RFRTAGGVTSGKGDWAWLQHTLACLA----ADGRAAVVLDTGAVTRGSGSKNEDKERNIR 369

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           +W ++ D I+ ++ LP +LF+ T  A  + +L+ RK+  R+GK+ L+NA+
Sbjct: 370 KWFVDKDTIDGVILLPENLFYNTTAAGVIVVLNKRKSTARKGKITLLNAS 419


>gi|304438089|ref|ZP_07398032.1| type I restriction-modification system DNA-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368862|gb|EFM22544.1| type I restriction-modification system DNA-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 525

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 194/486 (39%), Gaps = 80/486 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IW+ A DL G     DF + +L     R +   L    +A   +    G ++ D
Sbjct: 10  AELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREA---GDTDFD 66

Query: 69  L------------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
                        ++ V++ G+ F   SE   + L    T  +L   +            
Sbjct: 67  YAALPDDEAMAEKDNIVQILGF-FIPPSELFQNVLARAETNESLNETLEQVFRHIESSAT 125

Query: 108 ----SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                D+   +F++FD +S+       E+   L K+      + L H          + Y
Sbjct: 126 GTPSQDDLTGLFDEFDVNSSKLGATVKERNAKLTKLLSGVGAMRLGHYQNNTIDAFGDAY 185

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+R + S   +   ++ TP++V  L T L +             +  +YDP CG+G  
Sbjct: 186 EYLMRMYASNAGKSGGEYYTPQEVSELLTRLTV--------IGKTQVNKVYDPACGSGSL 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +      +        +GQ+     + +C   M +  +  D       +I  G
Sbjct: 238 LLKFAKVIGRENVRNGF------YGQDENITAYNLCRINMFLHDINFD-----DFDIAHG 286

Query: 280 STL-SKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL +   +  + F   +SNPP+ KKW  KD   +  + +    G   P    +S     
Sbjct: 287 DTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPLLINDPRYAPAGVLAP----VSKSDFA 342

Query: 338 FLMH----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           F+MH    LAN         G AAIV     ++  R+G+ E +IR++L++++ ++A++ L
Sbjct: 343 FIMHALAWLANN--------GTAAIVCFPGIMY--RSGA-ERKIRQYLVDSNYVDAVIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T IAT + +L   K +        I+A+     + N  K    ++ +    IL
Sbjct: 392 PDNLFFGTTIATCIMVLKKSKPDT---TTVFIDASKECVKVTNSNK----LSQENIENIL 444

Query: 454 DIYVSR 459
            +Y  R
Sbjct: 445 KLYTDR 450


>gi|296132420|ref|YP_003639667.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           sp. JR]
 gi|296030998|gb|ADG81766.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           potens JR]
          Length = 518

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 142/315 (45%), Gaps = 43/315 (13%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  RL+   L+  + K FS I   P  V   V  N+YE+ +  F     +   +F TP  
Sbjct: 123 TYTRLDNDTLI-ALLKIFSEI---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFYTPTS 178

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++           P   R L DP CG+GG    +   V +   H K P   + 
Sbjct: 179 LVKLIVEVI----------EPYKGRIL-DPACGSGGMFVQSARFVQN---HKKNPSSEIS 224

Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
            +GQE   ET  +C   + +  L  D        I+Q +T  +++     RF + ++NPP
Sbjct: 225 IYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCINRFDFVMANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F      + D V+KE K  +  R+  GLP   + + +++    + L    N  GRA  V+
Sbjct: 277 F------NVDGVDKE-KIKDDPRYPFGLPSNDNANYIWIQEFYSAL----NDKGRAGFVM 325

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ++S      A   E EIR+ L+++ +++ ++A+  + F+   +   LW     K +  RG
Sbjct: 326 ANSA---SDARGSELEIRKKLIQDKVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQTERG 382

Query: 421 -KVQLINATDLWTSI 434
            KV  I+A +++  +
Sbjct: 383 DKVLFIDARNIYRQV 397


>gi|75909704|ref|YP_324000.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75703429|gb|ABA23105.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 694

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 191/444 (43%), Gaps = 61/444 (13%)

Query: 15  IWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID---L 69
           +W++A+ L    D K +++   ++    L+  +       + ++++Y A  G+  +    
Sbjct: 13  LWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQEYEALKGTRREKAIA 72

Query: 70  ESFVKVAGYSFYNTSEYS--LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           E  ++  G+   + + Y+  L+     +    +++ + S  ++ K   +D        RL
Sbjct: 73  EIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSI-ESYKPELKDTLPQDEYFRL 131

Query: 128 EKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +   G+  ++ KNFS I   P+     +   IYE+ +  F     +G  +F TPR VV 
Sbjct: 132 TRTDKGIPKQLLKNFSNI---PENATGDMFGQIYEYFLGNFALSEGQGGGEFFTPRSVVR 188

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPH 243
           L   ++ +P             T++DP CG+GG    +   + +     +      L  +
Sbjct: 189 LMVEII-EPHQG----------TVFDPACGSGGMFVQSAQFIEEQRKKLNQSAADDLFVY 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302
           GQE   ET  +    + +  L  D R        Q +T  +D F    +F Y L+NPPF 
Sbjct: 238 GQEKTLETVKLAKMNIAVNGLRGDVR--------QTNTYYEDPFGSFGKFDYVLANPPFN 289

Query: 303 KKWEKDKDAVEKEHKNGELGRFG------------PGLPKISDGSMLFLMHLANKLELPP 350
                D   + +   +     +G             G   + + + L++   A  L+   
Sbjct: 290 V----DDVNLSRVEIDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWINLFATSLK--- 342

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRAA+V+++S      A   E++IR+ L+E +LI  ++ LP+++F+   +   LW  
Sbjct: 343 -PKGRAALVMANSA---SDARHSEADIRQKLIEENLIYGMLTLPSNMFYTVTLPATLWFF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSI 434
              KT++   K+  I+A +++T +
Sbjct: 399 DRGKTDD---KILFIDARNIFTQV 419


>gi|225351808|ref|ZP_03742831.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157055|gb|EEG70394.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 853

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 149/329 (45%), Gaps = 51/329 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++     A   +    I+ +YDPT
Sbjct: 164 VLGFIYEYLISNFAANAGKKAGEFYTPSEVSQLMSEIV-----AWHLQGREQIK-IYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      VA    +   P  ++ + QEL+  T+ +    +++R +       L 
Sbjct: 218 SGSGSLLIHIGQAVARRNGN---PDSIMYYAQELKENTYNLTRMNLVMRGI-------LP 267

Query: 274 KNI--QQGSTLSKD-----LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNG 319
            NI  + G TL  D         K   Y        +SNPP+ + W    D  +KE    
Sbjct: 268 DNIVARNGDTLEDDWPWFDTLENKEETYNPLFVDAVVSNPPYSQNW----DPTDKEID-- 321

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              RF  G+   S     FL+H    L       G   IVL    LF G     E +IR+
Sbjct: 322 --PRFSYGIAPKSRADYAFLLHDLYHLR----ADGIMTIVLPHGVLFRG---GEEGQIRK 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L  ++ ++R   V +++A+  +     +GK
Sbjct: 373 NLIENRHIQAIIGLPANIFFGTGIPTIVMVLRKKRDDDR---VLIVDASKHFIK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R   KFSR++
Sbjct: 427 NNKLQASDIKRIVDVVSNNRTVPKFSRLV 455


>gi|52548302|gb|AAU82151.1| type I restriction-modification system DNA methylase [uncultured
           archaeon GZfos11A10]
          Length = 704

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 52/344 (15%)

Query: 145 LHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           L+PD    V   V   IYE+ + +F  + +    +F TP  +V L  A +LDP+      
Sbjct: 143 LNPDELKRVSGDVFGRIYEYFLTQFADQKAHDGGEFFTPISLVSL-IAHVLDPESG---- 197

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 T+ DP CG+GG    +   VA+ G +      L   G E    T  +    + +
Sbjct: 198 ------TVLDPACGSGGMFVQSARIVAEHGQNPT--DRLTFRGLEKNATTIRLAKMNLAV 249

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             LE D        IQ+  T  +D     GK   + ++NPPF    E D D V+ +    
Sbjct: 250 HGLEGD--------IQKAITYYEDPHELVGKA-DFVMANPPFNVD-EIDADKVKTD---- 295

Query: 320 ELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              R   GLP      K+S+G+ +++ +  + L    N  GRA  V+SS       AG G
Sbjct: 296 --VRLPFGLPGVNKKDKVSNGNYVWISYFYSYL----NEKGRAGFVMSSQA---SSAGGG 346

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E+++R+ L+E   ++ +VA+ ++ F+   +   LW L+  K E  R KV +I+A +++  
Sbjct: 347 EAKVRQKLVETGDVDVMVAIRSNFFYTRTVPCELWFLNRDKPEAHRDKVLMIDARNIY-- 404

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            R   +K    + +Q++ +L I V    G+  + LD  + GY R
Sbjct: 405 -RKVTRKIYDFSPEQQQNLLAI-VWLYRGQTEKYLDLVS-GYCR 445


>gi|149176155|ref|ZP_01854771.1| type I restriction-modification system, M subunit, putative
           [Planctomyces maris DSM 8797]
 gi|148845022|gb|EDL59369.1| type I restriction-modification system, M subunit, putative
           [Planctomyces maris DSM 8797]
          Length = 104

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 4/88 (4%)

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           LSNPPFG +W+K +  ++KEH ++G  GRFGPGLP++SDGS+LFL+   +K+    +GG 
Sbjct: 2   LSNPPFGVEWKKIQKEIKKEHEQDGFNGRFGPGLPRVSDGSLLFLI---SKMRPAKDGGS 58

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R  IVL+ SPLF G AGSGESEIRR+ L
Sbjct: 59  RFGIVLNGSPLFTGNAGSGESEIRRYPL 86


>gi|315222635|ref|ZP_07864524.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
 gi|315188321|gb|EFU22047.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
          Length = 325

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 31/229 (13%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTGG L +A+ H+ D     K       +GQE    T A+    + +    SD +     
Sbjct: 32  GTGGMLIEAIRHIGD-----KQMTYGRIYGQENNLSTSAIARMNLFLHG-ASDFK----- 80

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLP 329
            + QG TL    F      ++F+  L+NPPFG+ KW  D    +K       GR   G P
Sbjct: 81  -VAQGDTLRTPKFIEHGQLQKFNCVLANPPFGQEKWGADSFESDK------YGRNMWGCP 133

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIE 388
             S+    +L H+   ++ P +G  + A+VL    LF NG+    E +IR  L+++DLIE
Sbjct: 134 SDSNADFAWLQHMIKSMK-PMDG--KVAVVLPQGVLFHNGK----EGDIREQLIKSDLIE 186

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           A+VAL   +F+ T ++  +  L+N K  E +GKV LI+AT+++T  R +
Sbjct: 187 AVVALAGGVFYGTGVSACILFLNNHKRPEHKGKVCLIDATNIYTPKRAQ 235


>gi|315172562|gb|EFU16579.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1346]
          Length = 537

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F S   + A +F TP+ V  + + +      ++ +E+      +YDP 
Sbjct: 177 VIGDAYEYLIGEFASSAGKKAGEFYTPQAVSKIMSEIT-----SIGQETRAPFH-IYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 231 MGSGSLMLNIRRYLTNPDQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 279 MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 334 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 387 GLPANIFFGTSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 439

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 440 IVSTYKKRED 449


>gi|145630827|ref|ZP_01786605.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
 gi|144983709|gb|EDJ91169.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
          Length = 555

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 207 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 255

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +A   +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 256 MGSGGFFVQTERFIA---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 312

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 313 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 358

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 359 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 412

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +W L+  K  +R+G+V  I+A  +
Sbjct: 413 LPGQLFTNTQIPACIWFLNRNK--KRQGEVLFIDARQI 448


>gi|163803500|ref|ZP_02197371.1| N-6 DNA methylase [Vibrio sp. AND4]
 gi|159172718|gb|EDP57568.1| N-6 DNA methylase [Vibrio sp. AND4]
          Length = 573

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 150/338 (44%), Gaps = 58/338 (17%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +H D     ++ ++YE+++ +F     +    F TP  +V L   ++ +P +        
Sbjct: 190 VHADLNSKDILGHVYEYMLGQFALAEGKRGGAFYTPASIVSLIVEMI-EPFEG------- 241

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGM 259
               +YDP  G+GGF   +   +    +  ++ P+     +  +GQE    T  +    M
Sbjct: 242 ---RVYDPAMGSGGFFVQSEKFIERRANQKEVDPLTQKQKISIYGQEYNHTTWQLAAMNM 298

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
            IR L+ D  +      +  ST +       R  + ++NPPF  K+W    D  +     
Sbjct: 299 AIRGLDYDFGK------EPASTYTNVQHPDLRADFIMANPPFNMKEWNTGVDDNDP---- 348

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G P   + +  ++ H+     L P+G    A++L++  +    + + E EIR
Sbjct: 349 ----RWIYGNPPSGNANFAWMQHML--YHLAPDGS--QALLLANGSM--SSSTNNEGEIR 398

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINAT 428
             L+ENDL+E +VALP  LF  T I   +W L+  KT           +R+G+V  I+A 
Sbjct: 399 ASLIENDLVECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRDRKGEVLFIDA- 457

Query: 429 DLWTSIRNEG-KKRRIIND---DQRRQILDIYVSRENG 462
                 RN G  K R++ D   D  +++ D+Y + + G
Sbjct: 458 ------RNLGYMKDRVLRDFTRDDIQKVADLYHAWKTG 489


>gi|146291272|ref|YP_001181696.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens CN-32]
 gi|145562962|gb|ABP73897.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens CN-32]
          Length = 506

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 165/401 (41%), Gaps = 46/401 (11%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + FV   G SF++  E              L +   +     K +F+D  F++     EK
Sbjct: 74  QRFVLPEGASFWDLYEKRYEAGNGERIDKALHAIEEANGSKLKNVFQDISFNTDRLGQEK 133

Query: 130 A--GLLYKICKNFSGIELHPDTVPDRVMS-----NIYEHLIRRFGSEVSEGAEDFMTPRD 182
               LL  + ++F    L+  T  +RV S     N YE+LI+ F +     A ++ TP +
Sbjct: 134 QKNDLLRHLLEDFGKDILNLST--ERVGSLDIIGNAYEYLIKHFAAGSGATAGEYYTPPE 191

Query: 183 V-VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           V   LATAL            P     + DP  G+G  L      V       K      
Sbjct: 192 VSTLLATAL-----------EPVEGDQICDPCTGSGSLLLKCGAMVRKNSGSKKYALF-- 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE    T A+    M +   E + R +    I+      KD      F    +NPPF
Sbjct: 239 --GQEAIGSTWALAKMNMFLHG-EDNHRIEWGDTIRNPLLKEKDGNGLLHFDVVTANPPF 295

Query: 302 G-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
              KW  D      +  N   GRF  G+P  + G   F+ H+   L+ P  G  R  +V+
Sbjct: 296 SLDKWGHD------DASNDPYGRFRRGIPPKTKGDYAFITHMIETLK-PETG--RMGVVV 346

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF     S E +IR+ L+E +L++ ++ LP  LFF T I   + I    KT++   
Sbjct: 347 PHGVLFRA---SSEGKIRKQLIEENLLDTVIGLPEKLFFGTGIPAAILIFKKHKTDKN-- 401

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            V  I+A+  +      GK +  + D+  ++I+D Y +RE+
Sbjct: 402 -VLFIDASREFKP----GKNQNQLTDENIQKIIDTYKARES 437


>gi|42525885|ref|NP_970983.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|41815935|gb|AAS10864.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
          Length = 871

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 131/287 (45%), Gaps = 49/287 (17%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L++ F +E  +    F TP +V  +  A ++  + A   ES     TLYD
Sbjct: 137 DDIIGDAYEYLMKNFATESGKSKGQFYTPAEVSRI-LAHVIGIEKAKSGES-----TLYD 190

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A             PP +   GQE +  T  +    +++  + +     
Sbjct: 191 PACGSGSLLIRAAETA---------PPNVAVFGQEKDITTAGLAKMNLVLHNVAT----- 236

Query: 272 LSKNIQQGSTLSK-------DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
               I+ G+T S+       D    ++F + + NPPF  K W          H   + GR
Sbjct: 237 --AEIKSGNTFSEPKYKKHDDETALRQFDFAVVNPPFSDKNWT---------HGLQDFGR 285

Query: 324 FG--PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F      P   +G   +L+H+   L+      G+AA++L    LF G A   E+ IR+ L
Sbjct: 286 FDGYEERPPEKNGDFAWLLHVIKSLK----RNGKAAVILPHGVLFRGNA---EASIRKAL 338

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           ++   I+ I+ LP +LF+ T I   + ++     E+R+G + +I+A+
Sbjct: 339 IKKGFIKGIIGLPPNLFYGTGIPACIIVIDKENAEKRKG-IFIIDAS 384


>gi|126090304|ref|YP_001041759.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125999935|gb|ABN64004.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 863

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 213/495 (43%), Gaps = 72/495 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVREKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L      +    E   A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFLTNQGMTPEDIKALDEDDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +   +V+      +A  + ++T     S    +N R+ L ++      N K +F+   F+
Sbjct: 66  ETREYVQSNLGYFIAYDNLFSTWIDPKSDFDESNVRDALSAFSRLIHTNHKKLFDGI-FT 124

Query: 122 STIARLEKAG--------LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    L K G         +  +      I ++ +   D V+  IYE+LI +F +   + 
Sbjct: 125 TLETGLSKLGESPSKRTKAISDLLHLIKSIPMNSNQGYD-VLGYIYEYLIEKFAANAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD---AMNHVADC 230
           A +F TP +V     +LL+    A   +    I  +YDPT G+G  L +   A+   AD 
Sbjct: 184 AGEFYTPHEV-----SLLMSHITAHELQHKENIE-IYDPTSGSGSLLINIGQALAQYADK 237

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS------- 283
             +      +  + QEL+  T+ +    +++R +++   +      + G TL        
Sbjct: 238 ADN------ITYYAQELKANTYNLTRMNLIMRGIKATNIK-----TRNGDTLEDDWPYFD 286

Query: 284 ----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
               K+ +        +SNPP+ + W    D   KE  +    RFG   PK +     FL
Sbjct: 287 ESDPKETYNALYVDAVVSNPPYSQSW----DPTHKE-SDPRYSRFGLA-PK-TKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  +   L P+G     IVL    LF G     E +IR  L+EN+ I+ I+ LP ++FF
Sbjct: 340 LH--DLYHLKPDG--IMTIVLPHGVLFRG---GEEGKIRTQLIENNHIDTIIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L  ++   +   V +++A+  +     EGK  ++   D +R I D  ++R
Sbjct: 393 GTGIPTVILVLKQKR---QNTDVLIVDASKHFIK---EGKNNKLQASDIKR-ITDAVINR 445

Query: 460 ENG-KFSRMLDYRTF 473
           ++  KFS++++  T 
Sbjct: 446 QSCPKFSQLVEKSTI 460


>gi|295107662|emb|CBL05205.1| Type I restriction-modification system methyltransferase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 526

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 180/450 (40%), Gaps = 83/450 (18%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG----- 63
           A L   IW  A+DL G     DF + IL  TL  R       T  A +E   +F      
Sbjct: 11  AELHKTIWSIADDLRGSVDGWDFKQYILC-TLFYRFVSENLCTYLAEQEGDASFDYASMS 69

Query: 64  --------GSNIDLESFVKVAGYSFYNTSEY-------------SLSTLGSTNTRNNLES 102
                   G  +  + F  +    F N  ++              L+ L S   +N   S
Sbjct: 70  DDQAEWGRGETVKEKGFFILPSELFCNILKHVDKDGMRLTEDGQDLNELLSQTFKNIEGS 129

Query: 103 YIASFSD-NAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIEL---HPDTVPDRVM 155
            + + S+ + K +F+D D +S     + +E+   L K+      ++      D   D   
Sbjct: 130 AVGTESEGDLKGLFDDMDVNSAKLGNSVIERNKKLVKLISKIGSLDFGGAFQDNSID-AF 188

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP++V  L   + +    ++ K        +YDP CG
Sbjct: 189 GDAYEYLMTMYASNAGKSGGEFFTPQEVGELLARIAIGDRKSVNK--------VYDPCCG 240

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           +GG L              K   IL          GQE+   T+ +    M +  +  D 
Sbjct: 241 SGGLLL-------------KFAKILGKENVRNGYFGQEINLTTYNLARINMFLHDVNFDK 287

Query: 269 RRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL +   +  + F   +SNPP+  KWE   + +     N    RF P 
Sbjct: 288 F-----DIALGDTLKEPAHWDDEPFDAIVSNPPYSIKWEGKANPL-----NINDARFSPA 337

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F MH+ + L       G AAIV     L+ G A   E +IR +L+ N+
Sbjct: 338 GVLAPASKADLAFTMHMLSWLSTE----GTAAIVEFPGVLYRGGA---EGKIRDYLVRNN 390

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            +EA++ LP DLFF T IAT + +L   KT
Sbjct: 391 FVEAVIQLPADLFFGTTIATCIIVLKKNKT 420


>gi|296270473|ref|YP_003653105.1| site-specific DNA-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296093260|gb|ADG89212.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobispora bispora DSM 43833]
          Length = 540

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 194/476 (40%), Gaps = 71/476 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L + +WK A+ L G      +   +L    L+ +  A E  R A+RE+ L  G   
Sbjct: 19  TMADLRDTLWKAADKLRGSMDAAQYKDFVLGLVFLKYVSDAFEERREAIREEILEQGIPE 78

Query: 67  IDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNN--------LESYIASFSDNAKA 113
             L+ F+      +    F+   E   S L +              +++ + S    A  
Sbjct: 79  SRLDMFLDDKDEYIGHGVFWVPEEARWSHLAAHAKSEGIGELIDRAMDAIMKSNQSLAGV 138

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + + F+  +   R  + G L  +  +  F+G   H D     V+  +YE+ + +F     
Sbjct: 139 LPKIFNRDNVDQR--RLGELVDLIGDARFTG---HGDRPARDVLGEVYEYFLEKFARAEG 193

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADC 230
           +   +F TP  VV L   +L           P   R +YDP CG+GG    A   V A  
Sbjct: 194 KRGGEFYTPASVVKLLVEVL----------EPYAGR-VYDPCCGSGGMFVQAEKFVIAHR 242

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFT 288
           G  HK    +  +GQE    T  +    + I  +  +  PR           T  +D   
Sbjct: 243 GIQHKDD--IAVYGQESNERTWRLAKMNLAIHGISGNLGPR--------WADTFREDKHP 292

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +  + L+NPPF    W +  D            R+  G P  ++ +  +L H+ +KL 
Sbjct: 293 DLKADFVLANPPFNMSDWSRQVDDP----------RWRFGTPPANNANFAWLQHIISKLA 342

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G A +VL++  + + +  SGE EIR  ++E DL+  +VALP  LF  T I   L
Sbjct: 343 ----ERGTAGVVLANGSMSSKQ--SGEGEIRAAIVEADLVSCMVALPPQLFRTTQIPACL 396

Query: 408 WILSNRKTEE-------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           W     K+ +       RRG+V  I+A ++ T +    +  R++  D   +I D Y
Sbjct: 397 WFFDKDKSPQGAKRLADRRGEVLFIDARNMGTMV---DRTERVLTADDIARIADTY 449


>gi|145633239|ref|ZP_01788970.1| type I modification enzyme [Haemophilus influenzae 3655]
 gi|144986085|gb|EDJ92675.1| type I modification enzyme [Haemophilus influenzae 3655]
          Length = 571

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 223 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 271

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 272 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 328

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 329 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPTKG 374

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 375 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 428

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP+ LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 429 LPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 461


>gi|292491020|ref|YP_003526459.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291579615|gb|ADE14072.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 519

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 111/471 (23%), Positives = 192/471 (40%), Gaps = 68/471 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK+A+ L  +    ++  V+L    L+ +  A E   + + E    + G++ +  
Sbjct: 16  LQKSLWKSADRLRKNMDAAEYKHVVLGLIFLKYISDAFEELHAKLSEGLGEYAGADPEDA 75

Query: 71  S--------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                    FV       Y  +   L  +G  +    +E+ I   +   K +        
Sbjct: 76  DEYRAENVFFVPEGARWSYLQARAKLPGIGK-DVDEAMEA-IEKENPTLKGVLPKQYARQ 133

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            + +     L+  + K    I L   T   R ++  +YE+ +  F +   +    F TP 
Sbjct: 134 NLDKASLGALIDLLGK----IGLGDATARSRDILGRVYEYFLGEFAAAEGKKGGQFYTPA 189

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L           P   R +YDP CG+GG    +   V     H      + 
Sbjct: 190 AIVKLLVNML----------EPYKGR-VYDPCCGSGGMFVQSEKFVE---VHQGRIDDIS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ---QGSTLSKDLFTGKRFHYCLSN 298
            +GQE    T+ +C   + IR ++         N++   +GS L+ D     +  Y ++N
Sbjct: 236 IYGQESNQTTYRLCRMNLAIRGIDG-------SNVRWNGEGSFLN-DAHKDMKAEYIIAN 287

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGP----GLPKISDGSMLFLMHLANKLELPPNGGG 354
           PPF      D D       +GEL R  P    G+P + + +  ++ H+     L PNG  
Sbjct: 288 PPF-----NDSDW------SGELLRDDPRWQFGVPPVGNANFAWMQHMI--YHLAPNG-- 332

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS--- 411
              +VL++  L +   G GE  IR+ ++E  L++ IVALP  LF+ T I   LW +S   
Sbjct: 333 TLGLVLANGSLSSNSGGEGE--IRKAIIEAKLVDCIVALPDKLFYNTGIPACLWFISHDR 390

Query: 412 -NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            N     R  ++  I+A +L   I    ++ R  +D+   +I D Y +  N
Sbjct: 391 RNHNFRNREDEILFIDARNLGQMIT---RRNRDFSDEDIARIADTYHAWRN 438


>gi|329116119|ref|ZP_08244836.1| type I restriction-modification system, M subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326906524|gb|EGE53438.1| type I restriction-modification system, M subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 531

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  + + +      ++ +ES      +YDP 
Sbjct: 171 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRAPFH-IYDPA 224

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 225 MGSGSLMLNIRRYLINPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 272

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 273 MNLNNGDTLDADWPSEEPYQFDSVIMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 327

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 328 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 380

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 381 GLPANIFFGTSIPTTIIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 433

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 434 IVSTYKKRED 443


>gi|145634363|ref|ZP_01790073.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittAA]
 gi|229845102|ref|ZP_04465237.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 6P18H1]
 gi|145268343|gb|EDK08337.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittAA]
 gi|229811938|gb|EEP47632.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 6P18H1]
          Length = 558

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 210 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 258

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 259 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 315

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 316 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPTKG 361

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 362 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 415

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP+ LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 416 LPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 448


>gi|254670657|emb|CBA06718.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha153]
          Length = 512

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 195/487 (40%), Gaps = 84/487 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   IWK A+++ G     DF + +L     R +        S     Y+  G S+ID
Sbjct: 5   AQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI--------SENFTDYMQAGDSSID 56

Query: 69  LESF-------------VKVAGYSFYNTSEY-SLSTLGSTNTRNN---------LESYIA 105
             +              VKV GY  Y    + +++     N   N         +ES  +
Sbjct: 57  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 116

Query: 106 SF--SDNAKAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHPDTVPDRVM 155
            +    + K +F+DFD       ST+A   K  A +L  + + +F   E H   +     
Sbjct: 117 GYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDL----F 172

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  + +   +   +F TP+ V   + + L+     L       +  +YDP CG
Sbjct: 173 GDAYEYLISNYAANAGKSGGEFFTPQSV---SVSKLIA---RLAVHGQEKVNKIYDPACG 226

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A          H I       GQE+   T+ +    M +  +  +       +
Sbjct: 227 SGSLLLQAKKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYNKF-----H 275

Query: 276 IQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I+ G TL+   L   K F   +SNPP+   W    D            RF P   L   S
Sbjct: 276 IELGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKS 330

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++A
Sbjct: 331 KADFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIA 383

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I
Sbjct: 384 LAPNLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEI 436

Query: 453 LDIYVSR 459
           + ++  +
Sbjct: 437 VKLFADK 443


>gi|319945007|ref|ZP_08019269.1| type I modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319741577|gb|EFV94002.1| type I modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 571

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 130/290 (44%), Gaps = 45/290 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 206 ILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEML----------QPFKGR-VYDPA 254

Query: 214 CGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            G+GGF   +   +   G   ++ K   I V +GQE  P T  +    M IR +      
Sbjct: 255 MGSGGFFVQSEEFIEQHGGKATNGKSGQISV-YGQESNPTTWRLAAMNMAIRGI------ 307

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLP 329
           D +       TL  DL    R  + ++NPPF  K+W  +K A +         R+  G P
Sbjct: 308 DFNFGSGPADTLLNDLHPDLRADFVMANPPFNMKEWWNEKLAADP--------RWIAGTP 359

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              + +  +L H+     L P G    A++L++  + +    + E EIR+ L+E+D +E 
Sbjct: 360 PQGNANFAWLQHML--WHLAPTGS--MALLLANGSMSSNT--NNEGEIRKRLVEDDYVEC 413

Query: 390 IVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           +VALP  LF  T I   +W L+         ++K  +RRGK   I+A  +
Sbjct: 414 MVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGKFLFIDARQM 463


>gi|258515812|ref|YP_003192034.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779517|gb|ACV63411.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 584

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 148/325 (45%), Gaps = 46/325 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDP 212
           ++ N YE+LI +F S   + A +F TP+ + + L+  ++LD  D    + P  I  L D 
Sbjct: 229 LLGNAYEYLIGQFASGSGKKAGEFYTPQQISNILSRIVILDSQDPSTGKKP-YINNLLDF 287

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+   L +   H+      + I  I   +GQE    T+ +    ML+ R      +D 
Sbjct: 288 ACGSASLLINVKKHL----EPNSISQI---YGQEKNITTYNLARMNMLLHRF-----KDS 335

Query: 273 SKNIQQGSTLSKD------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G +L  D      +   K+      ++NPPF  +WE +    E         RF
Sbjct: 336 EFQIFHGDSLLNDWDILNEMNPAKKLKCDAVVANPPFSYRWEPNDTLAED-------FRF 388

Query: 325 GP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR  LLE
Sbjct: 389 KSYGLAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGA---EEKIRTKLLE 441

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ I+ LP +LFF T I   + +L   K   +   V  INA++ +    ++GK++ I
Sbjct: 442 DGNIDTIIGLPANLFFSTGIPVCILVLKKCK---KFDDVLFINASEYF----DKGKRQNI 494

Query: 444 INDDQRRQILDIYVSR--ENGKFSR 466
           +  +   +I+D Y  R  E+ K+SR
Sbjct: 495 LLPEHIDKIVDTYQFRKEEDKKYSR 519


>gi|300070273|gb|ADJ59673.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 539

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  + + +      ++ +ES      +YDP 
Sbjct: 171 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRAPFH-IYDPA 224

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 225 MGSGSLMLNIRRYLINPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 272

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 273 MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 327

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 328 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 380

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 381 GLPANIFFGTSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 433

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 434 IVSTYKKRED 443


>gi|257064463|ref|YP_003144135.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792116|gb|ACV22786.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 503

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 132/308 (42%), Gaps = 47/308 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F+ +++        ++   YE+ + +F     + A +F TP  VV     ++ 
Sbjct: 134 LGEVVDLFTNVQMAEKGDTRDILGRTYEYCLSKFAEAEGKNAGEFYTPACVVRTLVEII- 192

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P   R +YDP CG+GG    +   V +   H      L  +GQE  P T 
Sbjct: 193 ---------EPYRGR-VYDPCCGSGGMFVQSAQFVKN---HQGRIDDLSVYGQESNPTTW 239

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF------GKKWE 306
            + +  + IR +++D             T   D+   +RF + L+NPPF      G++ +
Sbjct: 240 KMAMMNLAIRGIDADL------GTFNADTFFNDIHKNERFDFVLANPPFNMSDWGGEQLK 293

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           +D              R+  G P   + +  ++ H+ + L       GR  +VL++  L 
Sbjct: 294 EDP-------------RWDFGTPPAGNANFAWMQHMIHHLA----DDGRMGMVLANGSL- 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                + E  IR+ +++  L+E IVA+P  LF+ T I   LWI+S     +RR     ++
Sbjct: 336 -SSQTNNEGAIRQKIVDAGLVEGIVAMPDRLFYSTGIPVSLWIISKESNRQRR--TLFVD 392

Query: 427 ATDLWTSI 434
           A ++ T +
Sbjct: 393 AREMGTMV 400


>gi|311033111|ref|ZP_07711201.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus sp. m3-13]
          Length = 538

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 211/499 (42%), Gaps = 92/499 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A  + + +W+ A  L G    +++   ILPF   R L        S  +E+YL      
Sbjct: 3   NARDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYL--------SENQEEYLKVN--- 51

Query: 67  IDLESFVKVA--------------GYSFYNTSEYSLSTLGST--NTR---NNLESYIASF 107
            DLE F +V               G  +     Y+   + S   N +   ++ +    SF
Sbjct: 52  -DLEEFYEVTDDTEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSF 110

Query: 108 SDNAK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           + NAK           +F D +   T  RL     E+A  L  I    +      D+  D
Sbjct: 111 NTNAKRNAVAEADFANVFSDVNLGDT--RLGSSTNERAKALNDIVLMINEFTFKDDSGRD 168

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ ++YE+LI +F +   +   +F TP +V  +   ++ +  D       G    +YDP
Sbjct: 169 -ILGDVYEYLIGQFAANAGKKGGEFYTPHEVSQILAKIVTNDADG-----TGDQFRVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L      + +      +      +GQEL   T+ +    +++  +     R++
Sbjct: 223 TMGSGSLLLTVQKELPNGDKEGSVEF----YGQELNTTTYNLARMNLMMHGVN---YRNM 275

Query: 273 SKNIQQGSTLSKDL-FTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              +++  TL  D  F  K       +F   +SNPP+ + W  D   V++E       RF
Sbjct: 276 E--LKRADTLDADWPFAEKDGTQIPLKFDAVVSNPPYSQNW--DTKDVDREKDT----RF 327

Query: 325 -GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            G G+   S     F++H    L+      G  AIVL    LF G   + E +IR+ +++
Sbjct: 328 KGFGVAPASKADYAFVLHGLYHLD----KAGTMAIVLPHGVLFRG---ASEGKIRKNIID 380

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRR 442
           N+L++ ++ LP +LF+  +I T + +   R  E R+ K +  I+A+  +     +GK + 
Sbjct: 381 NNLLDTVIGLPPNLFYGASIPTCVLVFKGR--EARKSKDILFIDASKEFK----KGKSQN 434

Query: 443 IINDDQRRQILDIYVSREN 461
            +  +   +I+  Y +R++
Sbjct: 435 KLTAENINKIIGTYSNRKD 453


>gi|90411353|ref|ZP_01219365.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Photobacterium profundum 3TCK]
 gi|90327882|gb|EAS44213.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Photobacterium profundum 3TCK]
          Length = 567

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 58/339 (17%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +H D     ++ ++YE+++ +F     +    F TP  +V L   ++ +P +        
Sbjct: 184 VHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVTLIVEMI-EPFEG------- 235

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGM 259
               +YDP  G+GGF   +   +    +  ++  I     +  +GQE    T  +    M
Sbjct: 236 ---RVYDPAMGSGGFFVQSEKFIERHANEKQVDAITQKQKISIYGQEYNHTTWQLAAMNM 292

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
            IR L+ D  +      +  ST +       R  + ++NPPF  K+W    D  +     
Sbjct: 293 AIRGLDYDFGK------EPASTYTNVQHPDLRADFIMANPPFNMKEWNTGVDDNDP---- 342

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               RF  G P   + +  ++ H+ +   L P G    A++L++  +      + E  IR
Sbjct: 343 ----RFKYGQPPAGNANFAWMQHMLH--HLAPEGS--QALLLANGSM--SSTTNNEGTIR 392

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILS----------NRKTEERRGKVQLINAT 428
           + L+ENDLIE +VALP  LF  T I   +W L+           RK   R+G+V  I+A 
Sbjct: 393 QALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKKPRVDKAGRKLRGRKGEVLFIDA- 451

Query: 429 DLWTSIRNEG-KKRRIIND---DQRRQILDIYVSRENGK 463
                 RN G  K R++ D   D  +++ D++ + + G+
Sbjct: 452 ------RNLGYMKDRVLRDFSFDDVKRVADLFHAWKTGE 484


>gi|240171167|ref|ZP_04749826.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium kansasii ATCC 12478]
          Length = 520

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 44/284 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +M  +YE+ +  F     +   +F TP  VV +   +L           P   R +YDP 
Sbjct: 161 LMGEVYEYFVGNFARAEGKRGGEFFTPASVVKVIVEVL----------EPSRGR-VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A     +   H      +  +GQE   ET  +    + +  +++       
Sbjct: 210 CGSGGMFVQAEKFAYE---HSGDVNDICIYGQESVEETWRMAKMNLAVHGIDN------- 259

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K ++ G T   D   G R  Y ++NPPF  K W +D    EK+ +     RFG  +P  +
Sbjct: 260 KGLRWGDTFVCDQHAGVRMDYVMANPPFNIKDWARD----EKDPR----WRFG--VPPAN 309

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+ +KL      GGRA +V+++  + +    +GE  IR  +++ DL+  +VA
Sbjct: 310 NANYAWIQHILSKLAP----GGRAGVVMANGSMSSNS--NGEGIIRAHIVDADLVSCMVA 363

Query: 393 LPTDLFFRTNIATYLWILSNRKTE------ERRGKVQLINATDL 430
           LP  LF  T I   LW  +  K        +R G+V  I+A + 
Sbjct: 364 LPAQLFRSTGIPVCLWFFAMDKKAGCQGAIDRSGQVLFIDAREF 407


>gi|291320531|ref|YP_003515795.1| type I restriction modification system Hsdm modification
           (methylase) protein [Mycoplasma agalactiae]
 gi|290752866|emb|CBH40841.1| Modification (Methylase) protein of type Irestriction modification
           system HsdM [Mycoplasma agalactiae]
          Length = 892

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 47/332 (14%)

Query: 147 PDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           P T  D  V+  IYE+LI RF S   + A +F TP +V  L + ++     A   +   +
Sbjct: 182 PSTNQDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIV-----AYHLKDREV 236

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           I+ +YDPT G+G  L   + H     ++   P  +  + QEL+ E   +    ++++ + 
Sbjct: 237 IK-VYDPTSGSGSLLI-TIGHEFKKYNNGDSP--VSYYAQELKTEVFNLTRMNLIMKNIS 292

Query: 266 SDPRRDLSKNIQQGSTLSKD--LFTGKRFH--------YCLSNPPFGKKWEKDKDAVEKE 315
             P    ++N   G TL +D  +F    F           +SNPP+ +KW   + +++  
Sbjct: 293 --PTEIHARN---GDTLEQDWPMFENNDFSSYKHLSVDAVVSNPPYSQKWNSKEHSLDPR 347

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +          G+   S     FL+H  +   + P+G    AIVL    LF G +   E 
Sbjct: 348 Y-------VEYGIAPESKADYAFLLH--DLYHVQPDG--IMAIVLPHGVLFRGNS---EG 393

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ L++   I+ I+ LP ++F+ T I T + IL  R++E+    +  ++A+ L+    
Sbjct: 394 QIRKNLIQKQQIDTIIGLPINMFYSTEIPTIIMILKKRRSEK---DILFVDASKLYV--- 447

Query: 436 NEGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
            +G K+   +    ++I D+  +R E   FSR
Sbjct: 448 -KGDKKNKFSKSHVKKIADVVNNRIEIENFSR 478


>gi|32455489|ref|NP_862615.1| hypothetical protein pAH82_p16 [Lactococcus lactis subsp. lactis]
 gi|7767522|gb|AAF69138.1|AF228680_2 HsdM [Lactococcus lactis]
 gi|9789463|gb|AAF98315.1|AF243383_16 HsdM [Lactococcus lactis subsp. lactis]
          Length = 537

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  + + +      ++ +ES      +YDP 
Sbjct: 177 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRAPFH-IYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 231 MGSGSLMLNIRRYLINPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 279 MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 334 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 387 GLPANIFFGTSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 439

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 440 IVSTYKKRED 449


>gi|25026813|ref|NP_736867.1| putative restriction enzyme subunit M [Corynebacterium efficiens
           YS-314]
 gi|259506125|ref|ZP_05749027.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
 gi|23492092|dbj|BAC17067.1| putative restriction enzyme subunit M [Corynebacterium efficiens
           YS-314]
 gi|259166299|gb|EEW50853.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
          Length = 800

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 43/357 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSE 169
            + +  DF+  I +   +   L ++  +F+ + L       PD ++   YE+LIR F   
Sbjct: 119 GVLQHIDFNRKIGQSSMSDKKLRELIMHFNKVPLRQQDFEFPD-LLGAAYEYLIRDFADS 177

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TPRDVV L   +  DP        PGM  ++YDP  G+GG L  +  +V +
Sbjct: 178 AGKKGGEFYTPRDVVRLMVQIA-DP-------RPGM--SVYDPCTGSGGMLILSKEYVEE 227

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G   +    L   GQE +    A+    ML+  +   P  DL +N   G+        G
Sbjct: 228 SGGDGRN---LALAGQEKDGSVWAISKMNMLLHGI---PDADL-RNNDDGTLEDPAHIAG 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              +RF   ++NPPF   +  D     +  + G    + P   K +D  ++F+ H+   +
Sbjct: 281 GELQRFDRVITNPPFSMNYSADAIPFSERFRYG----YTPEKGKKAD--LMFVQHML-AV 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
             P   GG    V+    LF G     E +IR   L +DL+EA++ L   LF+ T I   
Sbjct: 334 TRP---GGLVTTVMPHGVLFRG---GDEGKIRTGFLNDDLLEAVIGLGPQLFYGTGIPAC 387

Query: 407 LWILS--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + +L     K + R  KV  INA   +     EG+ +  +  +   +I+  Y + E+
Sbjct: 388 ILVLRPLGSKPQHREDKVLFINADRDY----REGRAQNYLEPEHIEKIVSAYRAFED 440


>gi|310287614|ref|YP_003938872.1| HsdM-like protein of Type I restriction-modification system
           [Bifidobacterium bifidum S17]
 gi|309251550|gb|ADO53298.1| HsdM-like protein of Type I restriction-modification system
           [Bifidobacterium bifidum S17]
          Length = 855

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 143/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 ARNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEAG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +T    EGK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRDDDH---VLIVDASKYFTK---EGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDAVTGNRDVDKFSRLV 455


>gi|326407943|gb|ADZ65012.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. lactis CV56]
          Length = 531

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  + + +      ++ +ES      +YDP 
Sbjct: 171 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRAPFH-IYDPA 224

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 225 MGSGSLMLNIRRYLINPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 272

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 273 MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 327

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 328 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 380

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 381 GLPANIFFGTSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 433

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 434 IVSTYKKRED 443


>gi|167904493|ref|ZP_02491698.1| Type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei NCTC 13177]
          Length = 832

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 184/451 (40%), Gaps = 62/451 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L   ++K A+ L G    ++F + I     L+R     +  R  V    +  G S  + 
Sbjct: 7   QLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVVGLEMQAGKSEAEA 66

Query: 70  ESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFED 117
               + + +     SF+  S+     L   +   N+  Y       I + + +   + E 
Sbjct: 67  RQSAENSRWYKKEGSFWVPSQSRYEFL-INDAHQNVGDYLNKALTGIETANTSLYDVLEH 125

Query: 118 FDFSSTIARLEKAGL-LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGA 174
            DF+  + + +   + L ++  +F+   L  +    PD ++   YE+LI  F     +  
Sbjct: 126 IDFTRKVGQSKIPDIKLRQLITHFAKHRLRNEDFEFPD-LLGAAYEYLIGEFADSAGKKG 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV +   L+           P +   +YDP CG+GG L  A  ++ + G   
Sbjct: 185 GEFYTPRSVVRMMVRLV----------KPELKHDVYDPCCGSGGMLIAAKEYIDEHGEDG 234

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRF 292
           +   +    GQE      ++    ML+  + +        N+Q   TL+  + +  G+  
Sbjct: 235 RKANLF---GQEFNGTVWSIAKMNMLLHGIST-------TNLQNDDTLADPQHVEGGELM 284

Query: 293 HY--CLSNPPFGKKW---EKDKDAVEK-EHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           H+   ++NPPF   W   E++ D       K  E  ++G          ++FL H+    
Sbjct: 285 HFDRVITNPPFSLPWGNTERNTDGTPAWAPKFPERFKYGQVPLGAKKADLMFLQHML--- 341

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG  A V+    LF G     E  IR  ++++DL+EA++ +  +LF+ T I   
Sbjct: 342 -AVTRDGGMVATVMPHGVLFRG---GEERAIRAGIIDDDLLEAVIGVAPNLFYGTGIPAC 397

Query: 407 LWILSNR----------KTEERRGKVQLINA 427
           + +L  R          K  +R+GKV  INA
Sbjct: 398 ILVLRQRVQNGANRVSGKPVKRQGKVLFINA 428


>gi|224283254|ref|ZP_03646576.1| hypothetical protein BbifN4_05435 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140400|ref|ZP_07802593.1| HsdM [Bifidobacterium bifidum NCIMB 41171]
 gi|313132910|gb|EFR50527.1| HsdM [Bifidobacterium bifidum NCIMB 41171]
          Length = 855

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 143/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 ARNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEAG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +T    EGK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRDDDH---VLIVDASKYFTK---EGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDAVTGNRDVDKFSRLV 455


>gi|300173281|ref|YP_003772447.1| type I restriction-modification system subunit M [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887660|emb|CBL91628.1| type I restriction-modification system, M subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 531

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 166/369 (44%), Gaps = 47/369 (12%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D  K +F D D +ST       ++   + ++ +    I+L        V+ + YE+LI +
Sbjct: 125 DQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEH--DGDVIGDAYEYLIGQ 182

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F +   + A +F TP+ V  + + +  +  +D     +P  I   YDPT G+G  + +  
Sbjct: 183 FAAGAGKKAGEFYTPQAVSRIISEITSIGQED----RTPFHI---YDPTMGSGSLMLNIR 235

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            ++++       P  +  HGQEL   T+ +    +++  ++ +       N+  G TL  
Sbjct: 236 RYLSN-------PKQIHYHGQELNTTTYNLARMNLILHGVDQE-----RMNLNNGDTLDS 283

Query: 285 DLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           D  T +  +F   + NPP+  KW     A +K   +    RFG   PK S     FL+H 
Sbjct: 284 DWPTEEPYQFDAVVMNPPYSAKWS----AADKFLSDQRFERFGKLAPK-SKADFAFLLHG 338

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F+ T+
Sbjct: 339 FYHLK----DTGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFYGTS 391

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I T + IL   +       V  I+A    +S  ++ K + I+      +I+  Y  RE+ 
Sbjct: 392 IPTTVIILKKHRATR---DVLFIDA----SSDFDKQKNQNILLPAHIEKIVKAYKQREDA 444

Query: 463 -KFSRMLDY 470
            K+S +  +
Sbjct: 445 DKYSHVASF 453


>gi|125623518|ref|YP_001032001.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124492326|emb|CAL97260.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis
           subsp. cremoris MG1363]
          Length = 545

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  + + +      ++ +ES      +YDP 
Sbjct: 177 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRAPFH-IYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 231 MGSGSLMLNIRRYLINPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 279 MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 334 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 387 GLPANIFFGTSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 439

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 440 IVSTYKKRED 449


>gi|261210086|ref|ZP_05924384.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|297580647|ref|ZP_06942573.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
 gi|260840851|gb|EEX67393.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|297535063|gb|EFH73898.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
          Length = 546

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 39/317 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           ++ + YE+LI  F +   + A +F TP+ +  + + ++ LD  +    +   + R L D 
Sbjct: 186 ILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKKKNLNRVL-DF 244

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L +   H+   G       I   +GQE    T+ +    ML+  +     +D 
Sbjct: 245 TCGSGSLLLNVRKHITSAGG-----SIGKIYGQEKNITTYNLARMNMLLHGV-----KDT 294

Query: 273 SKNIQQGSTLSKD--LFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G TL  D  L   K      +F   ++NPPF  +WE D+   +++       RF
Sbjct: 295 EFEIFHGDTLLNDWDLLNEKNPAKKLKFDAVVANPPFSYRWESDRAEFKEDF------RF 348

Query: 325 -GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+   S     FL+H  + L    +  G  AI+L    LF  R GS E  IR  LL+
Sbjct: 349 KNHGIAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLF--RGGS-EQRIRSKLLK 401

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ ++ LP++LFF T I   + +L   K  ++   V  INA+D       +GK++  
Sbjct: 402 DGHIDTVIGLPSNLFFSTGIPVCILVL---KKCKKYDDVLFINASD--EENFEKGKRQNK 456

Query: 444 INDDQRRQILDIYVSRE 460
           +  D  ++I+D Y  R+
Sbjct: 457 LRPDDIQKIVDTYRFRD 473


>gi|241895015|ref|ZP_04782311.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Weissella paramesenteroides ATCC 33313]
 gi|241871733|gb|EER75484.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Weissella paramesenteroides ATCC 33313]
          Length = 533

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 152/365 (41%), Gaps = 55/365 (15%)

Query: 94  TNTRNNLESYIASFSDNAKA----IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE 144
           TN  ++L  +       AK     IF+D D +S+  RL      +   L         IE
Sbjct: 101 TNVADSLTHFNQGIQQGAKGTFEGIFDDMDLASS--RLGSNTQTRTKTLMDWISLIDQIE 158

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L   +    V+ ++YE+LI  F +     A +F TP +V  +   +L    + + + S  
Sbjct: 159 LDESS---DVLGDLYEYLIGMFAANSGAKAGEFYTPHEVSDIMARILTAGREDMAEYS-- 213

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               LYDP  G+G  L    +++ + G    I      +GQE+   T+ +    +++  +
Sbjct: 214 ----LYDPALGSGSLLLTTASYMHNDGVRGAIKY----YGQEVITTTYNLARINLMMHGV 265

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           E +       +I    TL+ D   G        + F   ++NPP+  KW    D   +E 
Sbjct: 266 EYN-----DIHIHNADTLNMDWPDGVVEGVDSPRMFDAVMANPPYSLKW----DNTNRED 316

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 RF  G+   S     FL H    L+      GR AIVL    LF G A   E  
Sbjct: 317 D----PRFKSGIAPKSKADFAFLQHCLYHLK----QDGRMAIVLPHGVLFRGAA---EGR 365

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ LLEN  I A++ LP  +F  T I T + +L   +T +    V  I+A+  +   +N
Sbjct: 366 IRKQLLENHNISAVIGLPEKIFTNTGIPTIIMVLEKNRTSD---DVLFIDASKGFEKQKN 422

Query: 437 EGKKR 441
             K R
Sbjct: 423 NNKLR 427


>gi|229822392|ref|YP_002883918.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229568305|gb|ACQ82156.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 541

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 47/286 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F +   +   +F TP  VV +                P   R +YDP 
Sbjct: 183 VLGEVYEYFLGKFAAAEGKRGGEFYTPPGVVRVLVE----------VLEPYRGR-VYDPC 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRD 271
           CG+GG    A   +     H + P  +  +GQEL   T  +    + +  L +   PR  
Sbjct: 232 CGSGGMFVQAEKFIE---RHGEDPQAISVYGQELNERTWRMAKMNLAVHGLTAQLGPR-- 286

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                  G T ++D+    +  + ++NPPF  K W           +N E  R+  G+P 
Sbjct: 287 ------WGDTFARDVHPDVQMDFVMANPPFNIKDW----------ARNAEDARWKFGVPP 330

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  ++ H+ +KL      GG A +V+++  + +   G GE  IR  L+E DL+  +
Sbjct: 331 AGNANYAWIQHILSKLAP----GGSAGVVMANGSMSSNSVGEGE--IRAALVEVDLVSCM 384

Query: 391 VALPTDLFFRTNIATYLWILSNRKTE------ERRGKVQLINATDL 430
           VALPT LF  T I   +W  +  K        +R G+V  I+A +L
Sbjct: 385 VALPTQLFRSTGIPVCVWFFAKSKAAGASGSVDRTGQVLFIDARNL 430


>gi|323340759|ref|ZP_08081011.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091882|gb|EFZ34502.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 556

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 208/508 (40%), Gaps = 96/508 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALE-------PTRSA---- 54
           +A  + N IW  A +L G+   +++   IL F   R L E  L        P  +     
Sbjct: 3   TAEDIKNKIWAMANELRGNMDASEYRDYILGFMFYRFLSEHQLNWQSENEFPDLAGKKLE 62

Query: 55  -VREKYL--AFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGSTNTRN----NLESY 103
            + ++Y   A G    DL  ++K      GY+      + +S +   N R+      +  
Sbjct: 63  KINQRYAKEAIGD---DLTEYLKDIADALGYAIEPKFTW-ISIVERVNDRSFAPSEFQEM 118

Query: 104 IASFSDNAK----------AIFEDFDFSSTIARLE-----KAGLLYKICKNFSGIELHPD 148
              F++NAK           +F D +  ++  RL      +A  L  I    + IE + D
Sbjct: 119 FDKFANNAKLNPNAVNDFTGVFSDINLGNS--RLGDSTNVRAKTLLDIVNLVNEIE-YKD 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGM 205
                ++ +IYE+LI  F     +   +F TP  V  +   ++   +DP+     E P  
Sbjct: 176 EAGHDILGDIYEYLIAEFAGNAGKKGGEFFTPHQVSLVLAKIIAANMDPE----IEHP-- 229

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YD  CG+G  L    + +   GS  +    +  +GQEL    + +    +++  ++
Sbjct: 230 --EVYDFACGSGSLLLTVEDELQIPGSQKRRR--VRYYGQELNTTNYNMARMNLMMHGVD 285

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                    +++   TL  D   G           F   ++NPP+  +W+   + ++   
Sbjct: 286 YQ-----MMDLRNADTLENDWPDGVGNDNIDHPHFFDAVVANPPYSSRWDNSANKIKD-- 338

Query: 317 KNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                 RF   GL   +     FL+H    L    N  G  AIVL    LF G A   E 
Sbjct: 339 -----ARFKDYGLAPKTKADYAFLLHGLYHL----NSRGTMAIVLPHGVLFRGNA---EG 386

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTS 433
           +IR+ LLE + I+AI+ LP  LFF T I T + +L   KT +    V  I+A+  D +  
Sbjct: 387 KIRKALLEKNQIDAIIGLPAGLFFSTGIPTIIMVLKKNKTNK---DVLFIDASGEDHYEK 443

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSREN 461
           I    KK+  + ++    I+D Y  RE+
Sbjct: 444 I----KKQNFLREEDINLIIDTYKKRED 467


>gi|68250154|ref|YP_249266.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 86-028NP]
 gi|68058353|gb|AAX88606.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 86-028NP]
          Length = 556

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 208 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 256

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 257 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 313

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 314 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 359

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 360 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 413

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 414 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 446


>gi|238926418|ref|ZP_04658178.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Selenomonas flueggei ATCC 43531]
 gi|238885822|gb|EEQ49460.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Selenomonas flueggei ATCC 43531]
          Length = 525

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 192/480 (40%), Gaps = 68/480 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRSAVREKY 59
           A L   IW+ A DL G     DF + +L     R +   L         E   +A     
Sbjct: 10  AELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREAGDTAFDYAA 69

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           L    +  + ++ V++ G+ F   SE   + L    T  +L   +               
Sbjct: 70  LPDDEAMAEKDNIVQILGF-FIPPSELFQNVLARAETNESLNETLEQVFRHIESSATGTP 128

Query: 108 -SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
             D+   +F++FD +S+       E+   L K+      + L  + D   D    + YE+
Sbjct: 129 SQDDLTGLFDEFDVNSSKLGATVKERNAKLTKLLSGVGAMRLGHYQDNTID-AFGDAYEY 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+R + S   +   ++ TP++V  L T L +             +  +YDP CG+G  L 
Sbjct: 188 LMRMYASNAGKSGGEYYTPQEVSELLTRLTV--------IGKTQVNKVYDPACGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                +      +        +GQ+     + +C   M +  +  D       +I  G T
Sbjct: 240 KFAKVIGRENVRNGF------YGQDENITAYNLCRINMFLHDINFD-----DFDIAHGDT 288

Query: 282 L-SKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L +   +  + F   +SNPP+ KKW  KD   +  + +    G   P     S     F+
Sbjct: 289 LINPHHWDDEPFEAIVSNPPYSKKWAGKDNPLLINDPRYAPAGVLAP----TSKSDFAFI 344

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L       G AAIV     ++  R+G+ E +IR++L++++ ++A++ LP +LFF
Sbjct: 345 LHSLAWLA----ASGTAAIVCFPGIMY--RSGA-EKKIRQYLVDSNYVDAVIQLPDNLFF 397

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IAT + +L   K +        I+A+     + N  K    ++ +    IL +Y  R
Sbjct: 398 GTTIATCIMVLKKSKPDT---TTVFIDASKECVKVTNSNK----LSQENIENILKLYTDR 450


>gi|85859881|ref|YP_462083.1| type I restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
 gi|85722972|gb|ABC77915.1| type I restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
          Length = 515

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 52/330 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +  F +   +    F TP+ +V L   ++ +P    FK        +YDP 
Sbjct: 157 LLGRVYEYFLGEFANAEGKKGGQFYTPKSIVRLMVEMI-EP----FK------GRVYDPC 205

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     K+  I +  GQE    T+ +C   + IR ++        
Sbjct: 206 CGSGGMFIMSERFVEN--HQGKVDDISI-FGQESNQTTYRLCRMNLAIRGIDGSQ----V 258

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP----GLP 329
           K   +GS L+ D+    +  + L+NPPF      D D       +G+L +  P    G+P
Sbjct: 259 KWNTEGSFLN-DVHKDLKSDFILANPPF-----NDSDW------SGQLLQSDPRWKYGVP 306

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + ++ +  +L H+     L P G    A VL++  L      + E EIR+ L+ENDL++ 
Sbjct: 307 QAANANFAWLQHMI--YHLSPKG--IMACVLANGSL--SSQTNNEGEIRKSLVENDLVDC 360

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           IVALP  LF+ T I   LW LS ++      +R  ++  I+A++       E +  R  +
Sbjct: 361 IVALPKQLFYNTGIPACLWFLSRKRAGNGDRKRSSEILFIDASEEGFM---EDRTHRAFS 417

Query: 446 DDQRRQILDIYVS--RENGKFSRMLDYRTF 473
           DD   +I   Y    ++ GK+    D R F
Sbjct: 418 DDDIAKIAGTYHEWRKQGGKYE---DVRGF 444


>gi|311064527|ref|YP_003971252.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
 gi|310866846|gb|ADP36215.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 855

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 143/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 ARNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEAG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +T    EGK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRDDDH---VLIVDASKYFTK---EGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDAVTGNRDVDKFSRLV 455


>gi|332288722|ref|YP_004419574.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330431618|gb|AEC16677.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 483

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ +  F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 136 ILGHVYEYFLGEFALAEGKKGGQYFTPKSIVTLIVEML----------QPYQGR-IYDPA 184

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR +E D  +  +
Sbjct: 185 MGSGGFFVQTEKFIE---AHQGNINQVSIYGQESNPTTWKLAAMNMAIRGIEFDFGKSNA 241

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            + +Q   + K      +  + ++NPPF  K W  +    +         R+  G+P   
Sbjct: 242 DSFKQPQHIDK------KMDFVMANPPFNMKDWWNESLQDDP--------RWQYGIPPEG 287

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  R  ++L++  +       GE EIR+ LLE DL+E +VA
Sbjct: 288 NANFAWLQHML--YHLSPNG--RMGLLLANGSM--SSQTGGEGEIRQRLLEADLVECMVA 341

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +W L+  K + R  +V  I+A ++
Sbjct: 342 LPGQLFTNTQIPACIWFLN--KNKPRAKEVLFIDAREI 377


>gi|145638854|ref|ZP_01794462.1| transcription elongation factor NusA [Haemophilus influenzae
           PittII]
 gi|145271826|gb|EDK11735.1| transcription elongation factor NusA [Haemophilus influenzae
           PittII]
          Length = 576

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 228 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 276

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 277 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 333

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 334 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 379

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 380 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 433

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 434 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 466


>gi|21228842|ref|NP_634764.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907365|gb|AAM32436.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 508

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 37/290 (12%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P  +       IYE+ + +F     +   +F TP  +V L   ++           P   
Sbjct: 146 PTDIQGDAFGKIYEYFLGKFAMAEGQKGGEFFTPISLVKLIVEII----------EPYHG 195

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + L DP CG+GG    + + V +   H K    +  +GQE   +T  +C   + +  L  
Sbjct: 196 KIL-DPACGSGGMFVQSAHFVEN--HHRKASSEISVYGQEKVADTVRLCKMNLAVHGLSG 252

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           D        I++G+T  +++      F + ++NPPF  K       V+ E   G+  R  
Sbjct: 253 D--------IKEGNTYYENIHNSVDAFDFVMANPPFNVK------KVDFEKVKGD-KRLP 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + + L++ H  + L    N  GRA  V+++S      A   E+EIR+ L+E++
Sbjct: 298 LGTPSTDNANYLWIQHFWSAL----NEKGRAGFVMANSA---SDARGTEAEIRKQLIESN 350

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDLWTSI 434
            ++ +V++ ++ F+   +   LW L   K + +R+ K+  I+A +++T +
Sbjct: 351 AVDIMVSIGSNFFYTVTLPCALWFLDKSKASTDRKDKILFIDAREIFTQV 400


>gi|73670137|ref|YP_306152.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72397299|gb|AAZ71572.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 508

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 41/305 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  + K F   +L P+   D     IYE+ + +F     +   +F TP  +V L   ++
Sbjct: 135 LLVALLKAF---KLPPEIKGD-AFGKIYEYFLGKFAMAEGQKGGEFFTPTSLVRLIVEII 190

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P   R L DP CG+GG    + + V +   H +    +  +GQE   +T
Sbjct: 191 ----------EPYHGRIL-DPACGSGGMFVQSAHFVEN--QHKEASSEISIYGQEKVADT 237

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKD 310
             +C   + +  L  D        I++G+T  +D+      F + ++NPPF  K      
Sbjct: 238 VRLCKMNLAVHGLSGD--------IKEGNTYYEDIHNSVDAFDFVMANPPFNVK------ 283

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            V+ E   G+  R   G P   + + L++ H  + L    N  GRA  V+++S      A
Sbjct: 284 KVDFEKVKGD-KRVPLGTPSTDNANYLWIQHFWSTL----NEKGRAGFVMANSA---SDA 335

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATD 429
              E+EIR+ L+E + ++ +V++ ++ F+   +   LW L   K    R+ K+  I+A +
Sbjct: 336 RGTEAEIRKQLIEGNAVDVMVSIGSNFFYTVTLPCTLWFLDKGKARTSRKDKILFIDARE 395

Query: 430 LWTSI 434
           ++T +
Sbjct: 396 IFTQV 400


>gi|268611918|ref|ZP_06145645.1| type I restriction-modification system methylation subunit
           [Ruminococcus flavefaciens FD-1]
          Length = 534

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 147/310 (47%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F SE  + A +F TP+ V  + T + +   +    +  G++  +YD  
Sbjct: 175 VLGDAYEYLIGQFASETGKKAGEFYTPQAVSQILTRVAIQGQE----DKQGLL--VYDAA 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A          HK P  +   GQEL   T+ +    M +  +  DP    +
Sbjct: 229 MGSGSLLLNARKF------SHK-PDYIRYFGQELSTTTYNLARMNMFLHGV--DPE---N 276

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + ++   TL  D  T +   F   L NPP+  KW     A +    +     +G   PK 
Sbjct: 277 QTLRNADTLDADWPTDEETDFDMVLMNPPYSAKWS----AAQGFLNDSRFSDYGVLAPK- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AI+L    LF G A   E +IR+ L+++  I A++
Sbjct: 332 SKADYAFLLHGFYHLK----NTGTMAIILPHGVLFRGAA---EGKIRQKLIDSGAIYAVI 384

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LF+ T+I T   I++ +K  + R  +  I+A+  +     +GKK+  ++ +    
Sbjct: 385 GLPANLFYNTSIPT--TIIALKKNRDGR-DILFIDASQQFV----KGKKQNSMSPENIDH 437

Query: 452 ILDIYVSREN 461
           I+++Y +R++
Sbjct: 438 IIELYTARQD 447


>gi|145629353|ref|ZP_01785152.1| transcription elongation factor NusA [Haemophilus influenzae
           22.1-21]
 gi|144978856|gb|EDJ88579.1| transcription elongation factor NusA [Haemophilus influenzae
           22.1-21]
          Length = 586

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 238 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 286

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 287 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 343

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 344 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 389

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 390 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 443

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 444 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 476


>gi|223042077|ref|ZP_03612253.1| putative type I restriction-modification system, methyltransferase
           subunit [Actinobacillus minor 202]
 gi|223017152|gb|EEF15588.1| putative type I restriction-modification system, methyltransferase
           subunit [Actinobacillus minor 202]
          Length = 840

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 212/489 (43%), Gaps = 74/489 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID- 68
            LA  +W +A DL G    +++   IL F   + L    E   + + +  ++F   + D 
Sbjct: 5   QLAATLWASANDLRGKMDASEYKNYILGFLFYKFLS---EHQENYLVQNEVSFEELDSDS 61

Query: 69  LESFVKVAGYSFYNTSEYS--LSTLGS--------TNTRNNL-ESYIASFSDNAKAIFED 117
           +E+  +  GY       Y   L+ +G         T+  N+  E+   S  D+ + +F D
Sbjct: 62  IETIKEDLGYFIAQEDLYRTWLTNIGENKWKLSHVTDAINHFNENLYDSQKDDFEGVFSD 121

Query: 118 FDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            + +S   +L     +K   + K+ +  +GI++  ++  D V   IYE+LI +F     +
Sbjct: 122 LNLTSE--KLGKNLSDKESAVKKLIELLNGIKITDNSEYD-VFGYIYEYLIAQFAMASGK 178

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  +   ++   D+   KE   +    YDPT G+G  L      V++  +
Sbjct: 179 KAGEFYTPNQVSRIMAEIV--ADELRQKEQCAV----YDPTAGSGSLLLT----VSEAVN 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
            ++    +   GQE    T+ +    +L+R ++  P   + +N     TL  D   G+  
Sbjct: 229 RNEHRDNIQFFGQEENNTTYNIARMNLLMRGVK--PANMILRN---ADTLKSDWPYGEIN 283

Query: 291 -----RFHYCL-SNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                 F  C+ +NPP+  KW+    DKD   KE+          G    +     FL+H
Sbjct: 284 GEDTPLFVDCVVANPPYSAKWDTERADKDVRFKEY----------GTAPATKADYAFLLH 333

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G   + E +IR  LL+   I+AI+ LP  +F  T
Sbjct: 334 SLYHLK----SDGIMAIVLPHGMLFRG---NEEEKIRTKLLQRRQIDAIIGLPAGIFTNT 386

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            I T + IL   + + +   V  I+A+      R E K   ++ +   ++ILD+Y  RE 
Sbjct: 387 GIPTIVMIL---RKQPKHNNVLFIDAS---QGFRKE-KNSNVLRERDIKKILDVYRKREV 439

Query: 461 NGKFSRMLD 469
              FS + D
Sbjct: 440 QAGFSHLAD 448


>gi|2865243|gb|AAC15897.1| type IC modification subunit [Lactococcus lactis]
          Length = 531

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 165/372 (44%), Gaps = 54/372 (14%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL-----YKICKNFSGIELHPDTVPD 152
           N LE     FS     +F D D +ST  +L    LL      ++ +    I+L       
Sbjct: 118 NELERQGEEFS----GLFADIDLNST--KLGSNALLRNVTITEVLRALDEIDLFEHN--G 169

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ + YE+LI  F S   + A +F TP+ V  + + +      ++ +E+      +YDP
Sbjct: 170 DVIGDAYEYLIGEFASSAGKKAGEFYTPQAVSKIMSEIT-----SIGQETRAPFH-IYDP 223

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +     
Sbjct: 224 AMGSGSLMLNIRRYLNNPDQVHY-------HGQELNTTTFNLARMNLILHGIDKE----- 271

Query: 273 SKNIQQGSTLSKDLFTGKRFHY---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             N+  G TL  D  + + + +   C+ NPP+  KW     A ++   +    RFG   P
Sbjct: 272 RMNLNNGDTLDADWPSEEPYQFDSVCM-NPPYSAKWS----AADQFLSDPRFERFGKLAP 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A
Sbjct: 327 K-SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDA 378

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   ++   R  V  I+A+  +   +N+     ++ D+  
Sbjct: 379 VIGLPANIFFGTSIPTTVIILKRNRS---RRDVLFIDASQDFEKRKNQN----VLLDEHI 431

Query: 450 RQILDIYVSREN 461
            +I+ I+  RE+
Sbjct: 432 DKIVSIHKKRED 443


>gi|150391750|ref|YP_001321799.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149951612|gb|ABR50140.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 150/328 (45%), Gaps = 37/328 (11%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+ + +F  E  +    F TP +V  +   L+   D    K+  G   TL+D
Sbjct: 137 DDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRIIARLIGIGD---IKQETGKKWTLHD 193

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L  A +        + I  I   +GQE  P+T  +     ++          
Sbjct: 194 PAAGSGSLLIRAADEAPTDEDGNSIVSI---YGQEKYPDTAGLAKMNFILHN-------K 243

Query: 272 LSKNIQQGSTLS----KDLFTG-KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRF- 324
            +  I+  +TL+    KD F G ++F + + NPPF  K W       E + K     RF 
Sbjct: 244 GTGEIKSANTLANPAYKDDFGGLRKFDFIVMNPPFSDKDWTDGIKPSEDKFK-----RFD 298

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           G G+P   +G   + +H+   L+   +  G+A I+L    L    A   E  IR+ +L+ 
Sbjct: 299 GYGIPPEKNGDYAWFLHVLKALD---SQRGKAGIILPHGVLSRPNA---EETIRKAVLDK 352

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ IV LP +LF+ T I   + I+     ++R G + +INA+      + +G K R+ 
Sbjct: 353 RYIKGIVGLPANLFYGTGIPACIIIIDKEDADKREG-IFMINAS---RGFKKDGNKNRLR 408

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYR 471
             D  + I+  ++++E  + +S+ + Y+
Sbjct: 409 EQDIEK-IVQTFINKEEIEGYSKFVTYK 435


>gi|294788779|ref|ZP_06754020.1| type I restriction-modification system, M subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483261|gb|EFG30947.1| type I restriction-modification system, M subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 547

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 199 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 247

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 248 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 304

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 305 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 350

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 351 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 404

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 405 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 437


>gi|295090549|emb|CBK76656.1| type I restriction system adenine methylase (hsdM) [Clostridium cf.
           saccharolyticum K10]
          Length = 816

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 44/326 (13%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE L+R+F  +  +    F TP +V  +  A ++  D A     P M  T+YD
Sbjct: 136 DDILGDAYEFLMRKFAQDSGKSKGQFYTPGEVSRI-MAKVIGIDKAT---DPSM--TVYD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A +           P  +  +GQE +  T  +    +++        + 
Sbjct: 190 PACGSGSLLIRAADEA---------PCEISIYGQEKDNSTAGLARMNLVLHN------KG 234

Query: 272 LSKNIQQGSTLSKDLFTG-------KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
               +   STLS   +         K F+Y + NPPF  K W    D +      G    
Sbjct: 235 AGVIVGNKSTLSAPQYKDENNPELLKTFNYIVVNPPFSDKSW---MDGITIPDSYGRYSE 291

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+P   +G   +L+H+   L+      G+AAI+L    LF G A   E++IR+ +++
Sbjct: 292 AVLGVPPEKNGDYAWLLHVLKSLK----STGKAAIILPHGVLFRGNA---EADIRKRIID 344

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              I+ I+ LP +LF+ T I   + +L      +R G + +I+A+  +     +G K R+
Sbjct: 345 RGYIKGIIGLPANLFYGTGIPACILVLDKEDAADRTG-IFMIDASKGYV---KDGNKNRL 400

Query: 444 INDDQRRQILDIYVSRENG-KFSRML 468
              D  + +       E+  K++R +
Sbjct: 401 REQDIHKIVTTFLTMDESDPKYARFV 426


>gi|1747491|gb|AAC44666.1| ALXA and HSDM [Mannheimia haemolytica]
          Length = 616

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 45/282 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 267 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSGR-IYDPA 315

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE---SDPR 269
            G+GGF   A   + A  G+ + I      +GQE    T  + V  M IR +     D  
Sbjct: 316 MGSGGFFVQADRFIQAHAGNRNAISV----YGQESNSTTRKLAVMNMAIRGIPFDFGDKP 371

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGL 328
            D         TL   L   K+    ++NPPF +K W  +  A +         R+  G 
Sbjct: 372 ED---------TLLNPLHIDKKMDVVMANPPFNQKEWWNESLANDP--------RWAYGT 414

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  +L H+     L P G  + A++  +  +      SGE +IR+ +++ DL+E
Sbjct: 415 PPQGNANFAWLQHMI--YHLSPKG--KMALLPRNGSM--SSQTSGEGDIRKNIVQADLVE 468

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           A++ALP  LF  T I   +WI++  K + R+G+V  INAT +
Sbjct: 469 AMIALPNQLFTNTQIPACIWIIN--KAKARKGEVLFINATQI 508


>gi|323344377|ref|ZP_08084602.1| type I restriction-modification system [Prevotella oralis ATCC
           33269]
 gi|323094504|gb|EFZ37080.1| type I restriction-modification system [Prevotella oralis ATCC
           33269]
          Length = 542

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 186/415 (44%), Gaps = 61/415 (14%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEK---------AGLLYKICKNFSGIELHPDTVPDRVMS 156
           SF  + K +F + + +S   +L K         A ++ KI +  S +    DT+ D    
Sbjct: 137 SFETSFKGLFSEINLNS--EKLGKNYAERNALLAKVINKIKEGVSKLNTTTDTLGD---- 190

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
             YE+LI +F +   + A +F TP+ +  + + ++ LD  D    +   + + L D TCG
Sbjct: 191 -AYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVTLDCQDPKSGKKKKISKVL-DFTCG 248

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +  + +   G       I   +GQE    T+ +    ML+  +     +D    
Sbjct: 249 SGSLLLNVRHEMGANG-------IGKIYGQEKNITTYNLARMNMLLHEV-----KDTEFE 296

Query: 276 IQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           I  G TL  D      +   K+  F   ++NPPF  +WE      E+  K+    R+G  
Sbjct: 297 IHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEPK----EETAKDFRFSRYGLA 352

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            PK S     FL+H  + L    +G G  AI+L    LF G     E  IR+ LL +D I
Sbjct: 353 -PK-SAADFAFLLHGFHYL----SGDGTMAIILPHGVLFRG---GKEETIRKKLLSDDNI 403

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP +LF+ T I   + +L   K   R   +  INA+        +GK++  +  +
Sbjct: 404 DAVIGLPANLFYSTGIPVCILVL---KKCRRTDDILFINASS--EEHYEKGKRQNSLRPE 458

Query: 448 QRRQILDIYVSR-ENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
              +I++ Y  R E  +++R   M + +  GY  + + R + +S   +K  LA +
Sbjct: 459 DINKIVETYQFRIEENRYARKVYMREIKDNGY-NLNISRYVNLSKEEEKIDLAEV 512


>gi|240949222|ref|ZP_04753566.1| type I restriction-modification system [Actinobacillus minor NM305]
 gi|240296338|gb|EER46982.1| type I restriction-modification system [Actinobacillus minor NM305]
          Length = 840

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 211/489 (43%), Gaps = 74/489 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID- 68
            LA  +W +A DL G    +++   IL F   + L    E   + + +  ++F   + D 
Sbjct: 5   QLAATLWASANDLRGKMDASEYKNYILGFLFYKFLS---EHQENYLVQNEVSFEELDSDS 61

Query: 69  LESFVKVAGY-----SFY-----NTSEYSLSTLGSTNTRNNL-ESYIASFSDNAKAIFED 117
           +E+  +  GY       Y     N SE        T+  N+  E+   S  D+ + +F D
Sbjct: 62  IETIKEDLGYFIAQEDLYRTWIVNISENKWKLSHVTDAINHFNENLYDSQKDDFEGVFSD 121

Query: 118 FDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            + +S   +L     +K   + K+ +  +GI++  ++  D V   IYE+LI +F     +
Sbjct: 122 LNLTSE--KLGKNLSDKESAVKKLIELLNGIKITDNSEYD-VFGYIYEYLIAQFAMASGK 178

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  +   ++   D+   KE   +    YDPT G+G  L      V++  +
Sbjct: 179 KAGEFYTPHQVSRIMAEIV--ADELRQKEQCAV----YDPTAGSGSLLLT----VSEAVN 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
            ++    +   GQE    T+ +    +L+R ++  P   + +N     TL  D   G+  
Sbjct: 229 RNEHRDNIQFFGQEENNTTYNIARMNLLMRGVK--PANMILRN---ADTLKSDWPYGEIN 283

Query: 291 -----RFHYCL-SNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                 F  C+ +NPP+  KW+    DKD   KE+          G    +     FL+H
Sbjct: 284 GEDTPLFVDCVVANPPYSAKWDTERADKDVRFKEY----------GTAPATKADYAFLLH 333

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G   + E +IR  LL+   I+AI+ LP  +F  T
Sbjct: 334 SLYHLK----SDGIMAIVLPHGVLFRG---NEEEKIRTKLLQRRQIDAIIGLPAGIFTNT 386

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            I T + IL   + + +   V  I+A+      R E K   ++ +   ++ILD+Y  RE 
Sbjct: 387 GIPTIVMIL---RKQPKHNNVLFIDAS---QGFRKE-KNSNVLRERDIKKILDVYRKREV 439

Query: 461 NGKFSRMLD 469
              FS + D
Sbjct: 440 RAGFSHLAD 448


>gi|301156219|emb|CBW15690.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 556

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 122/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 208 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 256

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 257 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 313

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 314 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 359

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 360 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 413

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K   R+G+V  I+A
Sbjct: 414 LPGQLFTNTQIPACIWFLNRNKA--RKGEVLFIDA 446


>gi|170717884|ref|YP_001784939.1| type I restriction-modification system, M subunit [Haemophilus
           somnus 2336]
 gi|168826013|gb|ACA31384.1| type I restriction-modification system, M subunit [Haemophilus
           somnus 2336]
          Length = 537

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 209/502 (41%), Gaps = 100/502 (19%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------CALEPTRSAVREKYL-- 60
           +W  A +L G    +++   IL F   R L               +EP++S V + YL  
Sbjct: 11  LWAMANELRGTMDASEYKNYILAFMFYRYLSKHQELYLVDNHILDIEPSQS-VNDAYLTQ 69

Query: 61  AFGGSNID-LESFVKVAGYSF-------------YNT----SEYSLSTLGSTNTRNNL-E 101
           A G    D L+      GY+              YN     S+Y  +   + N   NL E
Sbjct: 70  ATGEELQDYLQDISASLGYAINPEDTWDSLMRKIYNAEVMPSDYQ-ALFDNFNQNANLNE 128

Query: 102 SYIASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             +  F    + +F D +  ++    +  E+A  L  I K    IE   D   D ++  I
Sbjct: 129 DAVLDF----RGVFNDLNLGASHLGNSTNERAKSLGNIVKLVDEIEYKDDDGRD-ILGEI 183

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           YE+LI +F +   +   +F TP  V   LA  + LD  D   +E+      +YDPT G+G
Sbjct: 184 YEYLIGQFAANAGKKGGEFYTPHQVSKILAKLVTLDVADN--QET----FLVYDPTMGSG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L    N +          PI   +GQEL   T+ +    +++  +        +  + 
Sbjct: 238 SLLLTVGNELPQS------KPIKY-YGQELNTTTYNLARMNLMMHGVSYK-----NMTLS 285

Query: 278 QGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              TL  D   G           RF   ++NPP+  KW    D  E++ K+     FG  
Sbjct: 286 NADTLESDWPEGLDAQGIDQPLCRFDAVVANPPYSAKW----DNHERKLKDARFQPFGAL 341

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----- 382
            P  S     F++H    L       G  AIVL    LF G A   E +IR+ L+     
Sbjct: 342 APA-SKADYAFILHSLYHL----GEHGTMAIVLPHGVLFRGAA---EGKIRKALIGDNTS 393

Query: 383 --ENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGK 439
             + + ++A++ LP +LF+ T+I T + +   NRK ++    +  I+A+  +    ++GK
Sbjct: 394 NAQGNYLDAVIGLPANLFYGTSIPTTILVFKKNRKNKD----ILFIDASQDF----DKGK 445

Query: 440 KRRIINDDQRRQILDIYVSREN 461
            +  + D+  ++I+D Y +R+N
Sbjct: 446 NQNRLTDEHVQKIIDTYQARQN 467


>gi|17232089|ref|NP_488637.1| type I restriction-modification system DNA methylase [Nostoc sp.
           PCC 7120]
 gi|17133734|dbj|BAB76296.1| type I restriction-modification system DNA methylase [Nostoc sp.
           PCC 7120]
          Length = 527

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 55/316 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F     +    F TP  +V L   +L +P +            ++DP 
Sbjct: 161 VLGRVYEYFLGQFALAEGKKGGQFYTPESIVKLLVEML-EPYNG----------RVFDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H      +  +GQE    T+ +C   + IR ++        
Sbjct: 210 CGSGGMFVQSEKFVKN---HQGRLDDISIYGQESNETTYKLCRMNLAIRGIDG------- 259

Query: 274 KNIQ---QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGP 326
            NI+   +GS L+ D     +  + ++NPPF      D D        GEL    GR+  
Sbjct: 260 SNIKWNPEGSFLN-DAHKDLKADFVIANPPF-----NDSDW------GGELLRNDGRWLD 307

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              +P + + +  ++ H      L P G   A  VLS+  L +    SGE +IR+ L++ 
Sbjct: 308 KDLVPPVGNANFAWVSHFI--YHLAPTG--SAGFVLSNGSLSSNT--SGEGDIRKALVQK 361

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDLWTSIRNEGKK 440
           DL++ IV LPT LF+ T I   LW LS      K  +R G+V  I+A++L   +    + 
Sbjct: 362 DLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRDRHGEVLFIDASELGYMVN---RS 418

Query: 441 RRIINDDQRRQILDIY 456
            R   + +  +I D Y
Sbjct: 419 SRAFTEAEISKIADTY 434


>gi|217980318|ref|YP_002364294.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500955|gb|ACK48927.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 567

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 148/346 (42%), Gaps = 58/346 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +H D     ++ ++YE+++ +F     +    F TP  +V L   ++ +P +        
Sbjct: 184 VHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMI-EPFEG------- 235

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAGM 259
               +YDP  G+GGF   +   +       ++  +   H     GQE    T  +    M
Sbjct: 236 ---RVYDPAMGSGGFFVQSEKFIERHAHEKQVDALTQKHKISIYGQEYNYTTWQLAAMNM 292

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKN 318
            IR L+ D  +      +  ST +       R  + ++NPPF  K+W    D  +     
Sbjct: 293 AIRGLDYDFGK------EPASTYTNVQHPDLRADFIMANPPFNMKEWNTGVDDNDP---- 342

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               RF  G P   + +  ++ H+ +   L P G    A++L++  +      + E  IR
Sbjct: 343 ----RFKYGQPPSGNANFAWMQHMLH--HLAPEGS--QALLLANGSM--SSTTNNEGTIR 392

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILS----------NRKTEERRGKVQLINAT 428
           + L+ENDLIE +VALP  LF  T I   +W L+           RK   R+G+V  I+A 
Sbjct: 393 QALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKNPRVDKAGRKLRGRKGEVLFIDA- 451

Query: 429 DLWTSIRNEG-KKRRIIND---DQRRQILDIYVSRENGKFSRMLDY 470
                 RN G  K R++ D   +  +++ D++ + + G+    + Y
Sbjct: 452 ------RNLGYMKDRVLRDFSFEDIQKVADVFHAWKTGETVNGVTY 491


>gi|2689699|gb|AAB91416.1| modification subunit [Lactococcus lactis subsp. lactis bv.
           diacetylactis]
          Length = 531

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 141/310 (45%), Gaps = 39/310 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F     + A +F TP+ V  + + +      ++ +ES      +YDP 
Sbjct: 171 VIGDAYEYLIGMFAEGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRAPFH-IYDPA 224

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQEL   T  +    +++  ++ +      
Sbjct: 225 MGSGSLMLNIRRYLLNPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----R 272

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG   PK 
Sbjct: 273 MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK- 327

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 328 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 380

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +
Sbjct: 381 GLPANIFFGTSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDK 433

Query: 452 ILDIYVSREN 461
           I+  Y  RE+
Sbjct: 434 IVSTYKKRED 443


>gi|303239473|ref|ZP_07326000.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
 gi|302593036|gb|EFL62757.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
          Length = 494

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 117/265 (44%), Gaps = 27/265 (10%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE L+ +   +V  GA  + TPR ++      L           P  ++T+ DP 
Sbjct: 128 IKGQIYEGLLEKNAEDVKSGAGQYFTPRPLIKGIVKCL----------RPEPMKTISDPA 177

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL  A +++    S  K     + +    G E+   T  + +  M +  +     
Sbjct: 178 CGTGGFLLAAYDYIVQNYSLDKEQKHFLKYKTFFGNEIVANTRRLALMNMFLHNIGD--- 234

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL- 328
            D    I    +L  D  TG R  Y L+NPPFGKK        E E +  +L        
Sbjct: 235 IDSDNFISSADSLIAD--TGLRVDYVLTNPPFGKKSSMTFTNEEGEQETDDLTYNRQDFW 292

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S+  + F+ H+   L+      GRAA+VL  + LF G  G+GE+ +R+ LLE   + 
Sbjct: 293 ATTSNKQLNFVQHIRTLLK----SDGRAAVVLPDNVLFEG--GAGET-VRKKLLETTELH 345

Query: 389 AIVALPTDLFFRTNIATYLWILSNR 413
            I+ LPT +F++  +   +    N+
Sbjct: 346 TILRLPTGIFYKPGVKANVIFFDNK 370


>gi|78189087|ref|YP_379425.1| type I restriction-modification system specificity subunit
           [Chlorobium chlorochromatii CaD3]
 gi|78171286|gb|ABB28382.1| type I restriction-modification system specificity subunit
           [Chlorobium chlorochromatii CaD3]
          Length = 527

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 126/287 (43%), Gaps = 43/287 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR VV L   +L           P   R ++DP 
Sbjct: 163 VLGHVFEYFLGEFALAEGKKGGQFYTPRSVVELLVEML----------EPYKGR-VFDPC 211

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     K+  I + +GQE    T  +C   + IR ++S       
Sbjct: 212 CGSGGMFVHSETFVTE--HQGKVNDISI-YGQESNQTTWRLCKMNLAIRGIDSSQ----V 264

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K   +GS L+ D     +  Y ++NPPF    W  D    +        GR+  G P   
Sbjct: 265 KWNNEGSFLN-DAHKDLKADYIIANPPFNVSDWGGDLMRSD--------GRWQYGTPPTG 315

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H      L PNG  +A +VL+   L +    SGE +IR+ L+EN LI+ IV 
Sbjct: 316 NANFAWMQHFI--YHLAPNG--QAGVVLAKGALTS--KTSGEGDIRKALVENGLIDCIVN 369

Query: 393 LPTDLFFRTNIATYLWIL---------SNRKTEERRGKVQLINATDL 430
           LP  LF  T I   LW L         +N K  +R  ++  I+  +L
Sbjct: 370 LPAKLFLNTQIPAALWFLRRDAKFFVSTNGKFRDRSNEILFIDTRNL 416


>gi|224437017|ref|ZP_03657998.1| type I restriction-modification system specificity subunit
           [Helicobacter cinaedi CCUG 18818]
 gi|313143489|ref|ZP_07805682.1| type I restriction-modification system [Helicobacter cinaedi CCUG
           18818]
 gi|313128520|gb|EFR46137.1| type I restriction-modification system [Helicobacter cinaedi CCUG
           18818]
          Length = 500

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 46/334 (13%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I L+ +   D ++ +I+E+ +  F     +    F TP+ VV L  A+L +P +      
Sbjct: 139 ISLNQENTSD-ILGHIFEYFLGEFALSEGKKGGQFYTPKSVVELLVAML-EPYNG----- 191

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 ++DP CG+GG    +   V +     KI  I + +GQE    T  +    + +R
Sbjct: 192 -----RVFDPCCGSGGMFVQSERFVRE--HQGKISDISI-YGQESNQTTWRLAKMNLALR 243

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGEL 321
           +++S   +  S    +GS L+ D     +  + ++NPPF    W    +A+E +      
Sbjct: 244 KIDSSSLKWNS----EGSFLN-DAHKDLKADFIIANPPFNATDW--GSEALEND------ 290

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P  ++ +  ++ H  +   L P G  RA  VL+   L +    S E +IR+ L
Sbjct: 291 VRWQYGTPPSTNANYAWISHFIH--HLAPKG--RAGFVLAKGSLTSNT--STEGQIRKNL 344

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E++LIE IV LP  LF  T I   LW +   K          I+A  L   I    +K 
Sbjct: 345 IESNLIECIVNLPAKLFLNTQIPACLWFIKRNKP---HNNTLFIDARSLGELI---NRKN 398

Query: 442 RIINDDQRRQILDIY-----VSRENGKFSRMLDY 470
           RI+N D   +I + Y        +NG +S +L +
Sbjct: 399 RILNKDDIDKITETYHKWQKAQEQNGDYSDILGF 432


>gi|257093459|ref|YP_003167100.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045983|gb|ACV35171.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 515

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 130/278 (46%), Gaps = 36/278 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +    F TP  +V    A+L          +P   + +YDP 
Sbjct: 162 VLGQVYEYFLGQFASAEGKKGGQFYTPASIVKTLVAVL----------APHHGK-VYDPC 210

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V   G   K+  + + +GQE  P T  +    + IR +      D +
Sbjct: 211 CGSGGMFVQSEKFVEAHGG--KLGNVSI-YGQESNPTTWRLAAMNLAIRGI------DFN 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKIS 332
              +   T +++     R  + L+NPPF        +  +  H + E   R+  G P   
Sbjct: 262 LGREPADTFTRNQHPDLRADFILANPPF--------NVSDWWHGSLEGDPRWEFGTPPQG 313

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+   L+  P+G  RA IVL++  + + +  + E +IRR +++ D++E ++A
Sbjct: 314 NANYAWLQHMLYHLK--PSG--RAGIVLANGSMSSSQ--NSEGDIRRAMVDADVVEVMIA 367

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LFF T I   LW L+  K   R G+V  I+A  L
Sbjct: 368 LPGQLFFNTQIPACLWFLTKHKA-ARPGEVLFIDARKL 404


>gi|30248402|ref|NP_840472.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Nitrosomonas europaea ATCC 19718]
 gi|30138288|emb|CAD84296.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Nitrosomonas europaea ATCC 19718]
          Length = 571

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 159/368 (43%), Gaps = 75/368 (20%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVS 171
           A+F D DF++               K + G    P ++  R ++ ++YE+ + +F     
Sbjct: 182 ALFSDTDFAA---------------KTYKG---QPLSLQSRDILGHVYEYFLGQFALAEG 223

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    + TP+ +V L   +L           P   R +YDP  G+GGF   +   +   G
Sbjct: 224 KKGGQYYTPKSIVTLIVEML----------QPFKGR-VYDPAMGSGGFFVQSEEFIGQHG 272

Query: 232 ---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              ++ K   I V +GQE  P T  +    M IR +      D +       TL  DL  
Sbjct: 273 GKAANGKSGQISV-YGQESNPTTWRLAAMNMAIRGI------DFNFGSGPADTLLNDLHP 325

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             R  + ++NPPF  K+W  +K A +         R+  G P   + +  +L H+     
Sbjct: 326 DLRADFVMANPPFNMKEWWNEKLANDP--------RWIAGTPPQGNANFAWLQHML--WH 375

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           L P G    A++L++  + +    + E EIR+ L E+D +E +VALP  LF  T I   +
Sbjct: 376 LAPTGS--MALLLANGSMSSNT--NSEGEIRKRLTEDDYVECMVALPGQLFTNTQIPACI 431

Query: 408 WILS---------NRKTEERRGKVQLINATDLWTSIRNEG-KKRRIIND---DQRRQILD 454
           W L+         ++K  +RRG+   I+A       R  G  K R++ D   D  ++I D
Sbjct: 432 WFLTRDKQNGFALDKKKRDRRGEFLFIDA-------RQMGYMKDRVLRDFTVDDIQKIAD 484

Query: 455 IYVSRENG 462
            + + + G
Sbjct: 485 TFHAWQQG 492


>gi|145641328|ref|ZP_01796907.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
 gi|145273871|gb|EDK13738.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 22.4-21]
          Length = 357

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 36/278 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 8   ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 56

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 57  MGSGGFFVQTERFIT---AHQGNINNVSIYGQESNPTTWKLAAMNMAIRGIDYDFGKYNA 113

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NP F  K W  +  A +         R+  G+P   
Sbjct: 114 DSFTQPQHIDK------KMDFIMANPHFNDKDWWNESLADDP--------RWAYGIPPKG 159

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+     L PNG  R   VL++  + + +  S E EIR+ ++E DL+EA+VA
Sbjct: 160 NANYAWIQHMI--YHLSPNG--RMGFVLANGSMSSSQTNS-EIEIRKAIIEADLVEAMVA 214

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF    ++  +W L+  K  +R+G+V  I+A  +
Sbjct: 215 LPDKLFTNVELSACIWFLNRNK--KRKGEVLFIDARQI 250


>gi|94263933|ref|ZP_01287736.1| Type I restriction-modification system M subunit [delta
           proteobacterium MLMS-1]
 gi|93455678|gb|EAT05857.1| Type I restriction-modification system M subunit [delta
           proteobacterium MLMS-1]
          Length = 868

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 185/451 (41%), Gaps = 67/451 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN---- 66
           L + + +  +DL G    +++ + I     L+R     +  R  +R++    G S+    
Sbjct: 10  LESLLLRACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRREELRQELKQKGMSDADIA 69

Query: 67  IDLESFVKVAGYSFY---------------------NTSEYSLSTLGSTNTRNNLESYIA 105
           I+L+     +G  FY                      T +         N    L   +A
Sbjct: 70  IELDDPDHYSGKYFYVPPRARWNQPWQEEVVEGGEKKTVQRPALKHVKENVGTTLNKALA 129

Query: 106 SFSDNAKAIFED----FDFSSTIA-RLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNI 158
           +  D      +D     +F+  I  R      L     NF  I L  D    PD ++   
Sbjct: 130 AIEDANPDALQDVLSGINFNRKIGQRTLDDDTLADFVTNFEKIPLRDDDFEFPD-LLGAA 188

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI+ F     + A +F TP +VV L   +  DP++ +         ++YDPT G+GG
Sbjct: 189 YEWLIKFFADSAGKKAGEFYTPWEVVRLCVEIC-DPEEGM---------SIYDPTVGSGG 238

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQ 277
            L    + + + G        L   GQE    T ++C   ML+  +  +D R++ +    
Sbjct: 239 MLIQMRDFLREKGGDAGE---LALFGQEKIGTTWSICKMNMLLHGISHADIRQEDTLREP 295

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM 336
           Q    S +L   +R+   ++NPPF + +      ++K+ K    GRF   +P K     +
Sbjct: 296 QHLDDSNEL---RRYDRVVANPPFSQNY------IKKDLKFS--GRFPVMMPEKGKKADL 344

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +F+ H+   L+      GR A V+    LF G     E   R++ +++  +EA++ LP +
Sbjct: 345 MFVQHMLAVLK----HDGRMATVMPHGVLFRG---GEERAARKYFIDHGYLEAVIGLPGN 397

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LF+ T I   L +L N+     R  V  INA
Sbjct: 398 LFYGTGIPACLLVL-NKAGSANRDHVLFINA 427


>gi|307287470|ref|ZP_07567522.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306501516|gb|EFM70815.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
          Length = 343

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 43/291 (14%)

Query: 174 AEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           A +F TP  V  + A  L LD  +  F        +++DPT G+G  + +  N++     
Sbjct: 5   AGEFYTPHMVSDMMAQILTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYLTH--- 54

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
               P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +  
Sbjct: 55  ----PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPY 105

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+   
Sbjct: 106 TFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK--- 157

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G  AIVL    LF G A  G   IR+ LLE+  I A++ +P +LFF T+I T + +L
Sbjct: 158 -ETGTMAIVLPHGVLFRGAAEGG---IRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVL 213

Query: 411 -SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             NR+T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R+
Sbjct: 214 KKNRQTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERK 256


>gi|218261758|ref|ZP_03476493.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223772|gb|EEC96422.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii
           DSM 18315]
          Length = 553

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 215/508 (42%), Gaps = 89/508 (17%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKY---------- 59
           L   +W+ A+DL G     DF   +L F  LR + +  +E  R  +   Y          
Sbjct: 9   LGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYISDNYIEAARKELGRDYPDKAPEELKE 68

Query: 60  --------LAFGGSNIDLESFVK--------VAGYSFYNTSEYSLSTLGSTNTRNNLES- 102
                   L +G +  D+  F K        V    +  T+ Y L+   + +    LE  
Sbjct: 69  HGVSTPLQLWYGENPADVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDDLLKTLEKG 128

Query: 103 --YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYK-ICKNFSGI-ELHPDTVP 151
             YI   SF    + +F + + +S   +L     E+  LL K I K   GI +   DT  
Sbjct: 129 FKYIENESFDRAFQGLFSEINLNSD--KLGKNYDERNALLCKVITKIAEGIAQFSTDT-- 184

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM-IRTL 209
             ++ + YE+LI  F +   + A +F TP+ +  + + ++ LD  D   K  P   +  +
Sbjct: 185 -DILGDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTHDP--KSGPKKKLENV 241

Query: 210 YDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            D  CG+G  L +  + + A+ GS  KI      +GQE    T+ +    ML+  +    
Sbjct: 242 LDFACGSGSLLLNVRHRMKANGGSIGKI------YGQEKNITTYNLARMNMLLHGV---- 291

Query: 269 RRDLSKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            +D    I  G +L  D      +   K+  F   ++NPPF  +WE  ++        G+
Sbjct: 292 -KDSEFEIHHGDSLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPTEEM-------GK 343

Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR 
Sbjct: 344 DFRFKNYGLAPKSAADFAFLLHGFHFLK----QDGTMAIILPHGVLFRGGA---EERIRT 396

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+A++ LP +LFF T I   + +L   K  +    V  INA+D       +GK
Sbjct: 397 KLLKDGNIDAVIGLPANLFFSTGIPVCILVLKKCKKSD---DVLFINASD--KENFEKGK 451

Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSR 466
           K+  +      +I+D Y  R E  ++SR
Sbjct: 452 KQNKLQTKDIDKIIDTYKQRKEEERYSR 479


>gi|330991916|ref|ZP_08315865.1| Putative type I restriction enzyme HindVIIP M protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760937|gb|EGG77432.1| Putative type I restriction enzyme HindVIIP M protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 536

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 54/318 (16%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+  +YE+ +  F G+E   G E F TP  VV    ++L           P   R +YDP
Sbjct: 176 VLGRVYEYFLGGFAGAEGRRGGE-FYTPSSVVRTLVSML----------EPYKGR-VYDP 223

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GG    +   V   G   K+  I + +GQE    T  +    + +R + +D R + 
Sbjct: 224 CCGSGGMFVQSEQFVESHGG--KLGDIAI-YGQESNYTTWRLAKMNLAVRGIGADIRWN- 279

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                +GS L +D     RF   L+NPPF   + W    +         E  R+  G P 
Sbjct: 280 ----NEGSFL-RDALKDLRFDTILANPPFNVSEWWNASLE---------EDPRWQYGKPS 325

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  +L H+     L P+G   A +VL++  + + +  +GE +IRR ++  D+++ +
Sbjct: 326 AGNANYAWLQHIL--WHLAPDG--MAGVVLANGSMSSDQ--NGEGDIRRRMVGADVVDCM 379

Query: 391 VALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           VALP  LF+ T I   LW L+  K      +RRG++  I+A           +K  I+ D
Sbjct: 380 VALPGQLFYSTQIRACLWFLARNKNPKGWRDRRGEILFIDA-----------RKLGIMVD 428

Query: 447 DQRRQILDIYVSRENGKF 464
             RR++ D  V+   G +
Sbjct: 429 RTRRELTDADVALIAGTY 446


>gi|157372316|ref|YP_001480305.1| type I restriction-modification system, M subunit [Serratia
           proteamaculans 568]
 gi|157324080|gb|ABV43177.1| type I restriction-modification system, M subunit [Serratia
           proteamaculans 568]
          Length = 863

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 212/494 (42%), Gaps = 70/494 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAV-REKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    TR  +  E        + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLNEEDT 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--D 119
           D   +V+      +A  + ++T     S    +N R+ L ++    S   K +F+     
Sbjct: 66  DTVEYVQSNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDGIFTT 125

Query: 120 FSSTIARL-EKAGLLYKICKNF----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + +++L E AG   K   +       I ++ +   D V+  IYE+L+ +F +   + A
Sbjct: 126 LETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQGYD-VLGYIYEYLLEKFAANAGKKA 184

Query: 175 EDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            +F TP +V  L + ++   L   D +          +YDPT G+G  L   +N      
Sbjct: 185 GEFYTPHEVSVLMSNIIAHELKHKDTI---------KIYDPTSGSGSLL---INIGEAFE 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----- 286
            + K    +    QEL+  T+ +    +++R +++   +      + G TL +D      
Sbjct: 233 KYAKNKDSITYFAQELKANTYNLTRMNLIMRGIKASNIK-----TRNGDTLEEDWPYFDD 287

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                 +        +SNPP+ + W    D   KE  +    RFG   PK +     FL+
Sbjct: 288 SDPQGSYYALHVDAVVSNPPYSQNW----DPSFKE-SDPRYSRFGLA-PK-TKADFAFLL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G    AIVL    LF G     E +IR+ L+E + IE ++ LP ++FF 
Sbjct: 341 H--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGQIRKQLIEQNHIETVIGLPANIFFG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I T + +L  ++   +   V +++A+        EGK  ++   D +R I D  ++RE
Sbjct: 394 TGIPTVILVLRQKR---QNTDVLVVDAS---KHFMKEGKNNKLQASDIKR-ITDAVINRE 446

Query: 461 N-GKFSRMLDYRTF 473
           +  KFS+++   T 
Sbjct: 447 SIDKFSQLVSKETL 460


>gi|268600937|ref|ZP_06135104.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae PID18]
 gi|268683951|ref|ZP_06150813.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae SK-92-679]
 gi|268585068|gb|EEZ49744.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae PID18]
 gi|268624235|gb|EEZ56635.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae SK-92-679]
          Length = 401

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 139/327 (42%), Gaps = 49/327 (14%)

Query: 112 KAIFEDFD-----FSSTIARLEK--AGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHLI 163
           K +F+DFD       ST+A   K  A +L  + + +F   E H   +      + YE+LI
Sbjct: 16  KGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDL----FGDAYEYLI 71

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  L  A
Sbjct: 72  SNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLLLQA 123

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     H I       GQE+   T+ +    M +  +  +       +I+ G TL+
Sbjct: 124 KKQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNVNYNKF-----HIELGDTLT 172

Query: 284 K-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
              L   K F   +SNPP+   W    D            RF P   L   S     F++
Sbjct: 173 NPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFIL 227

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +LF+ 
Sbjct: 228 HALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNLFYG 280

Query: 401 TNIATYLWILSNRKTEERRGKVQLINA 427
           T IA  + +LS  K       +Q I+A
Sbjct: 281 TCIAVNILVLSKHKDNT---DIQFIDA 304


>gi|219871811|ref|YP_002476186.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
 gi|219692015|gb|ACL33238.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
          Length = 537

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 144/316 (45%), Gaps = 40/316 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            + + YE+LI +F S   + A +F TP+ V  + + ++ LD  +    +   +   L D 
Sbjct: 181 ALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKRKKLDSVL-DF 239

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +  + +A+ G H     I   +GQE    T+ +    ML+  +     +D 
Sbjct: 240 ACGSGSLLLNVRHQMAENGGH-----IGKIYGQEKNITTYNLARMNMLLHGV-----KDT 289

Query: 273 SKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G +L  D      +   ++  F   ++NPPF  +W+  +D       NG     
Sbjct: 290 EFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDPKEDLANDFRFNG----- 344

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR+ LL +
Sbjct: 345 -YGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRKKLLND 396

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+A++ LP +LF+ T I   + +L   K E+    +  INA D +     +GK++  +
Sbjct: 397 GNIDAVIGLPANLFYSTGIPVCILVLKKCKKED---DILFINAADAF----EKGKRQNRL 449

Query: 445 NDDQRRQILDIYVSRE 460
            D+   +I++ Y  R+
Sbjct: 450 TDEHIAKIIEHYQYRK 465


>gi|145637804|ref|ZP_01793453.1| transcription elongation factor NusA [Haemophilus influenzae
           PittHH]
 gi|145268997|gb|EDK08951.1| transcription elongation factor NusA [Haemophilus influenzae
           PittHH]
          Length = 572

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 223 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 271

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 272 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 328

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 329 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 374

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 375 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKGIINADLVECMVA 428

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 429 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 461


>gi|116754514|ref|YP_843632.1| type I restriction-modification system specificity subunit
           [Methanosaeta thermophila PT]
 gi|116665965|gb|ABK14992.1| type I restriction-modification system specificity subunit
           [Methanosaeta thermophila PT]
          Length = 196

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 21/186 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            G    + NFIW  A+D+  D +    +  VILP T++RRL+  LEPT+ AV +   +  
Sbjct: 3   NGQITWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLDMKASLD 62

Query: 64  GSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE----SYIASFSDNAKAIFED 117
            + I  +  +  + AG +FYNTS ++L  L +  +R  LE    +Y+  FS N + I ++
Sbjct: 63  KAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIIDN 122

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLI 163
           F+F + I RL KA  L  + + F    I L P  V             +  M  I+E L+
Sbjct: 123 FEFRNQIPRLAKADALGTLIEKFLDPSINLSPYPVLNSDGSVRLPGLDNHAMGTIFEELV 182

Query: 164 RRFGSE 169
           RRF  E
Sbjct: 183 RRFNEE 188


>gi|119477797|ref|ZP_01617920.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143]
 gi|119448958|gb|EAW30199.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143]
          Length = 707

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 155/359 (43%), Gaps = 62/359 (17%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++ KNFS I   P      ++  IYE+ +  F     +G   F TP  VV L   ++ +P
Sbjct: 141 QLLKNFSNI---PRDASGDILGKIYEYFLGNFALAEGQGGGQFFTPTSVVKLMVEII-EP 196

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-------CGSHHKIPPILVPHGQEL 247
                        T+YDP CG+GG    + ++V          G  H+   + V +GQE 
Sbjct: 197 YKG----------TVYDPACGSGGMFVQSQHYVEQHRDELKALGELHEEDQLYV-YGQEK 245

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWE 306
             +T  +    + +  L  +        I+Q ++ S+D   G  +F + ++NPPF     
Sbjct: 246 TLDTVKLAKMNLAVNGLRGE--------IKQANSYSEDPHNGFGKFDFVMANPPFNV--- 294

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK--------------ISDGSMLFLMHLANKLELPPNG 352
            D   +     +     +G  +P+              + + + L++   A  L+     
Sbjct: 295 -DDVPIATVEADTRFNTYG--IPRKKTKAKAADKGKETVPNANYLWISLFATSLKDNSKD 351

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRAA+V+++S      A   E++IR+ L+EN+LI  ++ LP+++F+   +   LW    
Sbjct: 352 SGRAALVMANSA---SDARHSEADIRQSLIENNLIYGMLTLPSNMFYTVTLPATLWFFDK 408

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--FSRMLD 469
            K ++   K+  I+A + +T I    +  R  N+ Q   I  I    +  +  F R++D
Sbjct: 409 NKQDD---KLLFIDARNTFTQI---DRAHREFNEQQIHNIAIISKLHKGNRQAFVRLVD 461


>gi|291542118|emb|CBL15228.1| type I restriction system adenine methylase (hsdM) [Ruminococcus
           bromii L2-63]
          Length = 511

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 145/325 (44%), Gaps = 44/325 (13%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+A  L +I K     +   D   D ++  IYE LI RF +   +   +F TP +V  + 
Sbjct: 133 ERAKSLNRIVKLVDSTQYKSDDGKD-ILGEIYEFLIGRFAATAGKKGGEFYTPHEVSKVL 191

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++ D      KES  +  ++YDPTCG+G  L    + V    +   +      +GQEL
Sbjct: 192 AKIVTDD----VKESDSVF-SVYDPTCGSGSLLLTVQDEVPGGNNTGAVKF----YGQEL 242

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSN 298
              T+ +    +++  +        + ++    TL  D   G         + F   ++N
Sbjct: 243 NTTTYNLARMNLMMHGVSFQ-----NMSLSNADTLESDWPDGPDVKGIDHPRSFDAVVAN 297

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+   W    D  E + K+     +G   PK +     F++H    L    N  G  AI
Sbjct: 298 PPYSAHW----DNSETKLKDPRFKDYGKLAPK-TKADYSFVLHGLYHL----NEEGTMAI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLEN---DLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           VL    LF G A   E  IR+ L+E+   + I AI+ LP++LF+ T I T + +L  ++T
Sbjct: 349 VLPHGVLFRGAA---EGTIRQNLIEHPSGNRIYAIIGLPSNLFYGTGIPTIIMVLKKKRT 405

Query: 416 EERRGK-VQLINATDLWTSIRNEGK 439
               GK +  I+A++ +   +N+ K
Sbjct: 406 ----GKDILFIDASNDFKKEKNQNK 426


>gi|14520514|ref|NP_125989.1| type i restriction modification enzyme, subunit m [Pyrococcus
           abyssi GE5]
 gi|5457729|emb|CAB49220.1| hsdM type I restriction modification enzyme, subunit M [Pyrococcus
           abyssi GE5]
          Length = 623

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 153/322 (47%), Gaps = 33/322 (10%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE ++  F  + ++  E + TPR+V+ L   LL D +D            + DP 
Sbjct: 264 ILGDAYEWILSYFAPQKAKEGEVY-TPREVIRLLVELL-DIEDG---------SDILDPA 312

Query: 214 CGTGGFLTDAMNHVADCGSHHKI--PPILVPHGQELEPETHAVCVAGML---IRRLESDP 268
            G+GG L +A  +V +          P ++ +GQEL   T A+    ++   I+  +   
Sbjct: 313 SGSGGMLIEAYRYVKEKLKKEGFDEEPAIMLYGQELNEVTAALSKLNLILHGIQEFKIFE 372

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             D   N Q    L ++     +  Y ++NPP+ +    +    ++  K+  + ++G   
Sbjct: 373 GADSLVNPQWEEELKRNGIEDGKVDYVIANPPWNQDGYDETRLSDRRIKH--IYKYGYTS 430

Query: 329 PKISDGSMLFLM-HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            + +D + + LM + A +         +  IVL +  LF G A   E  IR+ ++E+DLI
Sbjct: 431 KQSADWAWVQLMLYYARR---------KVGIVLDTGALFRGGA---EKAIRQGIVEDDLI 478

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EAI+ LP  LF+       + +L+  K EER+GK+  INA+  +     E +K   + D+
Sbjct: 479 EAIILLPEKLFYNAAAPGIIMVLNPNKPEERKGKILFINASREFRK-HPEVRKLNQLADE 537

Query: 448 QRRQILDIYVS-RENGKFSRML 468
             R+I+D Y   +E   FSR++
Sbjct: 538 HIRKIVDAYREFKEIEGFSRVV 559


>gi|320326658|gb|EFW82706.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 574

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 131/283 (46%), Gaps = 38/283 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TP  +V    A+L +P              +YDP 
Sbjct: 216 LLGQVYEYFLGQFASAEGKRGGQFYTPASIVKTLVAVL-NPHQG----------KVYDPC 264

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR +      D +
Sbjct: 265 CGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQESNPTTWRLAAMNLAIRGI------DFN 315

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +   +  ++  +  R  + L+NPPF     W     ++E +       R+  G P  
Sbjct: 316 LGKEPADSFVRNQHSDLRADFVLANPPFNVSDWWHG---SLEDDP------RWVYGTPPP 366

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+   L+      GRA IV+++  + + +  + E +IRR ++E D++E +V
Sbjct: 367 GNANYAWLQHMLFHLK----STGRAGIVMANGSMSSSQ--NSEGDIRRAMIEADVVEVMV 420

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           ALP  LFF T I   LW L+ +K  +R G+V  I+A  L  ++
Sbjct: 421 ALPGQLFFNTQIPACLWFLAKQKN-KRPGEVLFIDARKLGRNV 462


>gi|160893874|ref|ZP_02074656.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50]
 gi|156864461|gb|EDO57892.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50]
          Length = 338

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 131/306 (42%), Gaps = 40/306 (13%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +  +   +F TP  VV     +L        K   G +   YDP CG+GG    +  
Sbjct: 2   FAEQEGKRGGEFFTPSCVVRTLVEVL--------KPFKGRV---YDPCCGSGGMFVQSAK 50

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +   H      +  +GQ+  P T  +    + IR +E D             T   D
Sbjct: 51  FIEN---HSGNISNISIYGQDSNPTTWKMAQMNLAIRGIEPD------LGTYAADTFLDD 101

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                R  Y ++NPPF    W  DK    KE +     R+  G+P   + +  +L H+  
Sbjct: 102 RHPTLRADYIMANPPFNLSDWGLDK---LKEDQ-----RWKYGIPPAGNANFAWLQHMI- 152

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
              L P   GR  +VL++  L       GE EIR+ ++  DL+E IVA+PT LF+ T I 
Sbjct: 153 -YHLAP--AGRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIP 207

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             LW ++ +K  ++ G+   I+A  +   +    +K R + DD  ++I D Y +  +G  
Sbjct: 208 VSLWFINKQK--KQPGRTLFIDARKMGKMV---SRKLRELTDDDIKKISDTYEAFVDGTL 262

Query: 465 SRMLDY 470
             +  Y
Sbjct: 263 ENVKGY 268


>gi|30995437|ref|NP_439439.2| type I modification enzyme [Haemophilus influenzae Rd KW20]
          Length = 576

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     + +  + TP+ +V L   +L           P   R +YDP 
Sbjct: 228 ILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 276

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 277 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 333

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NP F  K+W  +  A +         R+  G P   
Sbjct: 334 DSFTQPQHIDK------KMDFIMANPHFNDKEWWNESLADDP--------RWAYGTPPKG 379

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 380 NANFAWLQHMI--YHLSPNG--KIALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 433

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 434 LPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDA 466


>gi|295401703|ref|ZP_06811670.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976323|gb|EFG51934.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 493

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 121/286 (42%), Gaps = 50/286 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  SEV  GA  + TPR        +L+D    L    PG     +DP  
Sbjct: 122 LGDLYEGLLEKNASEVKSGAGQYFTPR--------VLIDVIVELVNPQPG--ERCHDPAA 171

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A  HV +    +        +        G EL  +TH + +   L+     
Sbjct: 172 GTFGFMIAADRHVREQTDDYFDLSQEEIEFQKYKAFSGVELVRDTHRLAIMNALL----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+   I  G TLS    + K +   L+NPPFG K            K GE      
Sbjct: 227 ---HDIHGEILLGDTLSSLGESLKNYDVILTNPPFGTK------------KGGERATRTD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L+  PNG  RAA+V+  + LF G  G   ++IRR L++   
Sbjct: 272 FTFTTSNKQLNFLQHIYRALK--PNGKARAAVVVPDNVLFEGGVG---ADIRRDLMDKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           +  I+ LPT +F+   + T +   +       RGK  + N  ++W 
Sbjct: 327 LHTILRLPTGIFYAQGVKTNVLFFT-------RGKTDVGNTKEVWV 365


>gi|283477075|emb|CAY72970.1| type I restriction-modification system DNA methylase [Erwinia
           pyrifoliae DSM 12163]
          Length = 566

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 42/285 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 204 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYQGR-VYDPA 252

Query: 214 CGTGGFLTDA---MNHVADCGSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +   AD   ++       +V +GQE  P T  +    M IR +    
Sbjct: 253 MGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQESNPTTWRLAAMNMAIRGI---- 308

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D     +   TL  D     R  + ++NPPF  K+W   K  +E +       R+  G
Sbjct: 309 --DFDFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAK--LENDV------RWQYG 358

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G    A++L++  + +    + E EIRR L+E DL+
Sbjct: 359 TPPQGNANFAWMQHMIH--HLAPQGS--MALLLANGSMSSNT--NNEGEIRRKLVEADLV 412

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINA 427
           E +VALP  LF  T I   +W+L+  K+       R+G+V  I+A
Sbjct: 413 ECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRKGEVLFIDA 457


>gi|253995602|ref|YP_003047666.1| adenine-specific DNA-methyltransferase [Methylotenera mobilis JLW8]
 gi|253982281|gb|ACT47139.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylotenera mobilis JLW8]
          Length = 513

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 144/321 (44%), Gaps = 56/321 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR VV L   +L +P +            ++DP 
Sbjct: 158 VLGHVFEYFLGEFALAEGKQGGQFYTPRSVVELLVEML-EPYNG----------RVFDPC 206

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +AD     K+  I + +GQE    T  +    + IR +E+       
Sbjct: 207 CGSGGMFVQSEKFIAD--HQGKVNDISI-YGQESNQTTWRLAKMNLAIRGIEASQ----V 259

Query: 274 KNIQQGSTLS---KDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL----GRFG 325
           K   +GS L+   KDL    +  Y ++NPPF    W            +GEL    GR+ 
Sbjct: 260 KWNNEGSFLNDSHKDL----KADYIIANPPFNVSDW------------SGELLRNDGRWQ 303

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN- 384
            G+P   + +  +L H    L    N  G+A IVL+   L +    SGE +IR+ L+E  
Sbjct: 304 FGVPPAGNANFAWLQHFIYHL----NPTGQAGIVLAKGALTS--KTSGEGDIRKALIEQG 357

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDLWTSIRNEGKK 440
           ++I+ IV LP  LF  T I   LW +S    N K   R  ++  I+A +L   I    ++
Sbjct: 358 NVIDCIVNLPAKLFLNTQIPAALWFMSRNRTNGKFRNRSNEILFIDARNLGHLIN---RR 414

Query: 441 RRIINDDQRRQILDIYVSREN 461
            + ++    +QI D Y +  N
Sbjct: 415 TKELSHTDIKQITDTYHNWRN 435


>gi|307288976|ref|ZP_07568944.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306500067|gb|EFM69416.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
          Length = 343

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 140/291 (48%), Gaps = 43/291 (14%)

Query: 174 AEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           A +F TP  V  + A  + LD      KE P    +++DPT G+G  + +  N++     
Sbjct: 5   AGEFYTPHMVSDMMAQIVTLDQ-----KERP--FFSVFDPTMGSGSLMLNVRNYLTH--- 54

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
               P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +  
Sbjct: 55  ----PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPY 105

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+   W  D   ++    +    R+G   PK S     FL+H    L+   
Sbjct: 106 TFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK-SKADFAFLLHGFYHLK--- 157

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L
Sbjct: 158 -ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVL 213

Query: 411 -SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             NR+T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R+
Sbjct: 214 KKNRQTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERK 256


>gi|138894434|ref|YP_001124887.1| Type I restriction enzyme StySPI M protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265947|gb|ABO66142.1| Type I restriction enzyme StySPI M protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 493

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 121/286 (42%), Gaps = 50/286 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  SEV  GA  + TPR        +L+D    L    PG     +DP  
Sbjct: 122 LGDLYEGLLEKNASEVKSGAGQYFTPR--------VLIDVIVELVNPQPG--ERCHDPAA 171

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A  HV +    +        +        G EL  +TH + V   L+     
Sbjct: 172 GTFGFMIAADRHVREQTDDYFDLSQEEIEFQKYKAFSGVELVRDTHRLAVMNALL----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+   I  G TLS    + K +   L+NPPFG K            K GE      
Sbjct: 227 ---HDIHGEILLGDTLSSLGESLKNYDVILTNPPFGTK------------KGGERATRTD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L+  PNG  RAA+++  + LF G  G   ++IRR L++   
Sbjct: 272 FTFTTSNKQLNFLQHIYRALK--PNGKARAAVIVPDNVLFEGGVG---ADIRRDLMDKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           +  I+ LPT +F+   + T +   +       RGK  + N  ++W 
Sbjct: 327 LHTILRLPTGIFYAQGVKTNVLFFT-------RGKTDVGNTKEVWV 365


>gi|322420369|ref|YP_004199592.1| adenine-specific DNA-methyltransferase [Geobacter sp. M18]
 gi|320126756|gb|ADW14316.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacter
           sp. M18]
          Length = 539

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 136/308 (44%), Gaps = 39/308 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ K  S I   P ++       IYE+ +  F     +G  +F TP  +V L   ++
Sbjct: 140 LLKELLKKVSEI---PASLDYDAFGRIYEYFLGAFAMTEGQGGGEFYTPSSIVKLLAEVI 196

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPE 250
                      P   R L DP CG+GG    +   VA+   H K P   L   G E   E
Sbjct: 197 ----------EPFHGRIL-DPACGSGGMFVQSARFVAE---HQKNPAAELAICGVEKTDE 242

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +C   + +  LE D R   + N       S    TG+ F + L+NPPF      + +
Sbjct: 243 TGRLCRLNLAVHGLEGDIRHGGNVNSYYDDPHSA---TGQ-FDFVLANPPF------NVN 292

Query: 311 AVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           AV+KE     +G   RF  GLP+  + + L++    + L    N  GRA  V+++S    
Sbjct: 293 AVDKERLKDMVGAGRRFPCGLPRSDNANYLWIQLFYSAL----NATGRAGFVMANSA--- 345

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQLIN 426
             A S E E+R+ L+E   ++ +VA+  ++F+   +   LW     K + +R   V  I+
Sbjct: 346 SDARSSEQELRQKLIEARAVDVMVAVGPNMFYTVTLPCTLWFFDKGKAKTKRADTVLFID 405

Query: 427 ATDLWTSI 434
           A  ++  +
Sbjct: 406 ARHIYRQV 413


>gi|303326058|ref|ZP_07356501.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863974|gb|EFL86905.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 535

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 207/509 (40%), Gaps = 96/509 (18%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------------ECALEPTRS 53
           L   +W  A+ L G     DF   +L F  LR L                 +   +P  +
Sbjct: 9   LGAVLWSIADTLRGAMDADDFRDYMLAFLFLRYLSDNYEVAAKKELGNEYPDAGTQPGVT 68

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLES------YI 104
            +R  Y A      D E  ++   + +    EY   S++ +  T     L++      YI
Sbjct: 69  PLRIWYAANQADVPDFEKLMRRRVH-YVIKPEYLWDSIAEMARTQNGELLKTLQDGFKYI 127

Query: 105 A--SFSDNAKAIFEDFDFSS------TIARLEK-AGLLYKICKNFSGIELHPDTVPDRVM 155
              SF    + +F + + +S         R EK   ++ KI +  S      DT+ D   
Sbjct: 128 ENESFDSTFQGLFSEINLTSEKLGKRNAERNEKLCDIIKKIAEGLSSFSSEGDTLGD--- 184

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM-----IRTL 209
              YE+LI +F +   + A +F TP ++  + + ++ LD  D      PG      + ++
Sbjct: 185 --AYEYLIDKFAAGSGKKAGEFYTPHEISSILSGIVTLDSQD------PGTGPKKHLASV 236

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D  CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     
Sbjct: 237 LDFACGSGSLLLNVRGRMGAQG-------IGKIYGQEKNVTTYNLARMNMLLHGV----- 284

Query: 270 RDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +D    I  G TL+ D    +         F   ++NPPF  +W   +         GE 
Sbjct: 285 KDSEFEIFHGDTLTNDWDMLRETNPAKKPYFDAVVANPPFSYRWNPSEAL-------GED 337

Query: 322 GRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IRR 
Sbjct: 338 VRFKNYGLAPKSAADFAFLLHGFHYLKRE----GTMAIILPHGVLFRGGA---EERIRRK 390

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  I+ I+ LP +LF+ T I   + +L   K  +    V  INA++ +     +GK+
Sbjct: 391 LLEDGNIDTIIGLPANLFYSTGIPVCVLVLKKCKKSD---DVLFINASEHF----EKGKR 443

Query: 441 RRIINDDQRRQILDIYVSR-ENGKFSRML 468
           +  ++ +  ++I+D Y  R E  ++S+ +
Sbjct: 444 QNRLSTEHIKKIVDTYQFRTEEERYSKCV 472


>gi|259907263|ref|YP_002647619.1| Type I restriction modification DNA modification domain protein
           [Erwinia pyrifoliae Ep1/96]
 gi|224962885|emb|CAX54366.1| Type I restriction modification DNA modification domain protein
           [Erwinia pyrifoliae Ep1/96]
          Length = 568

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 42/285 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 204 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYQGR-VYDPA 252

Query: 214 CGTGGFLTDA---MNHVADCGSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +   AD   ++       +V +GQE  P T  +    M IR +    
Sbjct: 253 MGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQESNPTTWRLAAMNMAIRGI---- 308

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D     +   TL  D     R  + ++NPPF  K+W   K  +E +       R+  G
Sbjct: 309 --DFDFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAK--LENDV------RWQYG 358

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G    A++L++  + +    + E EIRR L+E DL+
Sbjct: 359 TPPQGNANFAWMQHMIH--HLAPQGS--MALLLANGSMSSNT--NNEGEIRRKLVEADLV 412

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINA 427
           E +VALP  LF  T I   +W+L+  K+       R+G+V  I+A
Sbjct: 413 ECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRKGEVLFIDA 457


>gi|21228300|ref|NP_634222.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906762|gb|AAM31894.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 505

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 36/281 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR VV L   +L +P +            ++DP 
Sbjct: 150 VLGHVFEYFLGEFALAEGKKGGQFYTPRSVVELLVEML-EPYNG----------RVFDPC 198

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   VAD     KI  I + +GQE    T  +    + IR ++S       
Sbjct: 199 CGSGGMFVQSEKFVAD--HQGKINDISI-YGQESNQTTWRLAKMNLAIRSIDSSQ----V 251

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           K   +GS L+ D+    +  Y ++NPPF    +   D + K+      GR+  G+P   +
Sbjct: 252 KWNNEGSFLN-DVHKDLKADYVIANPPFNDS-DWSGDLLRKD------GRWKYGVPPAGN 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  ++ H      L P+G  +A  VL+   L +    SGE +IR+ L+E  L++ IV L
Sbjct: 304 ANYAWIQHFL--YHLGPSG--QAGFVLAKGSLTS--KSSGEGDIRKELVEARLVDCIVNL 357

Query: 394 PTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDL 430
           P  LF  T I   LW LS    N K   R  ++  I+A ++
Sbjct: 358 PPKLFLNTQIPASLWFLSRNKANGKHRNRTDEILFIDARNM 398


>gi|319896988|ref|YP_004135183.1| type i restriction enzyme hindviip m protein [Haemophilus
           influenzae F3031]
 gi|317432492|emb|CBY80849.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae F3031]
          Length = 586

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 238 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 286

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 287 MGSGGFFVQTERFIT---AHQGNINNMSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 343

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 344 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 389

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EI + ++  DL+E +VA
Sbjct: 390 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIHKGIINADLVECMVA 443

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 444 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 476


>gi|258517330|ref|YP_003193552.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781035|gb|ACV64929.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 527

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/448 (22%), Positives = 177/448 (39%), Gaps = 69/448 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW+ A    G     ++   ILP   ++ L  +       + +KY      N  + +   
Sbjct: 12  IWRGANTFRGAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKY------NDPVRAERA 65

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDNAK---AIFEDFDFSSTIA- 125
           +    F    ++  S L      +NL   I         DN      +F + DF+S    
Sbjct: 66  INRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVFRNIDFNSEAML 125

Query: 126 --RLEKAGLLYKICKNFSGIELHPDTV-PDR------VMSNIYEHLIRRFGSEVSEGAED 176
               +K   L ++ ++F  ++L P  + P+        + + YE++I  F  +  + A  
Sbjct: 126 GNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGEFARQAGKKAGS 185

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  L   ++          +P +  T+YDPTCG+G  L        +    +  
Sbjct: 186 FFTPSEVSELIARIV----------NPKISDTMYDPTCGSGSLLIRTGKKAIE--KENGN 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KR 291
              L  +GQE+   + ++    M +  +       +   I  G +L+  +         +
Sbjct: 234 IKTLALYGQEMNGSSWSMAKMNMFLHEI-------MDARIAWGDSLANPMHLDPDGNLMQ 286

Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGE----------LGRFGPGLPKISDGSMLFLM 340
           F   ++N PF + KW    +   +    G+            RF  G+P  S G   FL+
Sbjct: 287 FDVIVANMPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVPPASKGDWAFLL 346

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+     GGR A V     LF G   + E  IR+ ++E +L++A++ LP +LF+ 
Sbjct: 347 HMIASLK----SGGRIAAVAPHGVLFRG---ASEGRIRQAVIERNLLDAVIGLPANLFYG 399

Query: 401 TNIATYLWILSNRKTEERRGKVQLINAT 428
           T I   + +    K    R  V  I+A+
Sbjct: 400 TGIPACILVF---KKNRNRNDVLFIDAS 424


>gi|160939174|ref|ZP_02086525.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438137|gb|EDP15897.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC
           BAA-613]
          Length = 496

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 150/340 (44%), Gaps = 42/340 (12%)

Query: 120 FSSTIARLEKAGLLYKICK---NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F   + ++  A +LY++ +   N   + +  D     V   IYE L+++   ++  GA  
Sbjct: 95  FKGAVNKISNAAILYRVVQMINNEKWVAMSSD-----VKGEIYEGLLQKNAEDIKSGAGQ 149

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           + TPR ++      L           P  ++T+ DP CG+GGF   A + +AD  ++   
Sbjct: 150 YFTPRPLIRAMVRCL----------RPEPMKTIADPCCGSGGFFLAAQSFLADPNNYALD 199

Query: 234 HKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
            +    L     +G E+ P T+   +  + +  +      D+  N+    TL   L T  
Sbjct: 200 REQKGFLKNETFYGNEIVPATYKTALMNLYLHNI-----GDIYGNVP--ITLGDALLTDP 252

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-FLMHLANKLE 347
           G R  Y ++NPPFGKK        E E ++ +L          S    L F+ H+   L+
Sbjct: 253 GYRVDYVMTNPPFGKKSSITFTNEEGEQEDEDLVYNRQDFWTTSSNKQLNFVQHINTILK 312

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AA+V+  + LF G  G+GE  +R+ LLE   +  I+ LPT +F++  +   +
Sbjct: 313 ----ATGKAAVVVPDNVLFEG--GAGEV-VRKKLLETTDLHTILRLPTGIFYKPGVKANV 365

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
                R    +R + + +   DL T+I    K+  + + D
Sbjct: 366 LFFDKRPASAQR-QTKEVWIYDLRTNIHFTLKQHPMTDAD 404


>gi|22416339|emb|CAC87150.1| restriction-modification enzyme type I M subunit [Streptococcus
           thermophilus]
          Length = 531

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 203/481 (42%), Gaps = 66/481 (13%)

Query: 8   AASLANFIWKNAEDLWG-----DFKHTDFGKVILPFTLLRRLECALE---------PTRS 53
           A SL   +W +A+ L G     ++K+   G +   +   ++L    E         P RS
Sbjct: 2   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDKQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            +   ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 62  TLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 112 K------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +       +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +      ++ +ES      +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRVPFH-IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++      H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLIHPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG   PK S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK-SKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDKIVSTYKKRE 442

Query: 461 N 461
           +
Sbjct: 443 D 443


>gi|331018716|gb|EGH98772.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 576

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 38/283 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TP  +V    A+L +P              +YDP 
Sbjct: 218 LLGQVYEYFLGQFASAEGKRGGQFYTPASIVKTLVAVL-NPHHG----------KVYDPC 266

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR +      D +
Sbjct: 267 CGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQESNPTTWRLAAMNLAIRGI------DFN 317

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +   T   +  +  R  + L+NPPF     W     ++E +       R+  G P  
Sbjct: 318 LGREPADTFIYNQHSDLRADFVLANPPFNVSDWWHG---SLEGDP------RWVYGTPPQ 368

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + +  +L H+   L+      GRA IVL++  + + +  + E +IRR ++E D++E +V
Sbjct: 369 GNANYAWLQHMLFHLK----SSGRAGIVLANGSMSSTQ--NTEDDIRRAMVEADVVEVMV 422

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           ALP  LFF T I   LW L+ +K   R G+V  I+A  L +++
Sbjct: 423 ALPGQLFFNTQIPACLWFLAKQKV-TRPGEVLFIDARKLGSNV 464


>gi|241763494|ref|ZP_04761547.1| N-6 DNA methylase [Acidovorax delafieldii 2AN]
 gi|241367335|gb|EER61666.1| N-6 DNA methylase [Acidovorax delafieldii 2AN]
          Length = 516

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 136/299 (45%), Gaps = 38/299 (12%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           G L ++    S I    D    R V+  +YE+ +  F S   +    F TP  +V    A
Sbjct: 140 GKLGELVDLVSTIGFGEDAAIARDVLGQVYEYFLGMFASAEGKRGGQFYTPASIVKTLVA 199

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L  P +            +YDP CG+GG    +   +   G   K+  + + +GQE  P
Sbjct: 200 IL-SPHEG----------KVYDPCCGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQEANP 245

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD 308
            T  +    + IR ++ +  R      +   T +++     R  Y L+NPPF    W   
Sbjct: 246 TTWRLAAMNLAIRGIDYNLGR------EPADTFTRNQHPDLRADYILANPPFNISDWWHG 299

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             ++E +       R+  G P   + +  +L H+ + L+  P G  RA IVL++  + + 
Sbjct: 300 --SLEGDP------RWEFGDPPHGNANYAWLQHMLHHLK--PTG--RAGIVLANGSMSSS 347

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           +  + E  IR  +++ D++E +VALP  LFF T I   LW L+ +K   R+G+V  I+A
Sbjct: 348 Q--NNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACLWFLAKQKA--RKGEVLFIDA 402


>gi|10956197|ref|NP_051026.1| type IC modification subunit [Streptococcus thermophilus]
 gi|6137148|gb|AAF04357.1| type IC modification subunit [Streptococcus thermophilus]
          Length = 531

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 203/481 (42%), Gaps = 66/481 (13%)

Query: 8   AASLANFIWKNAEDLWG-----DFKHTDFGKVILPFTLLRRLECALE---------PTRS 53
           A SL   +W +A+ L G     ++K+   G +   +   ++L    E         P RS
Sbjct: 2   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDKQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            +   ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 62  TLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 112 K------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +       +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFSDIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +      ++ +ES      +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRVPFH-IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++      H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLIHPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG   PK S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGKLAPK-SKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDKIVSTYKKRE 442

Query: 461 N 461
           +
Sbjct: 443 D 443


>gi|256832724|ref|YP_003161451.1| type I restriction-modification system, M subunit [Jonesia
           denitrificans DSM 20603]
 gi|256686255|gb|ACV09148.1| type I restriction-modification system, M subunit [Jonesia
           denitrificans DSM 20603]
          Length = 521

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 163/358 (45%), Gaps = 52/358 (14%)

Query: 112 KAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
           K +F+D D +S     T+AR  +   L K+      + L    D   D +  + YE+L++
Sbjct: 135 KGLFDDLDVNSSKLGNTVARRNEK--LVKLLDAIGDLPLGNFEDNSID-LFGDAYEYLMQ 191

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S+  +   ++ TP++V  +   + +             +  +YDP  G+G  L   +
Sbjct: 192 MYASQAGKSGGEYYTPQEVSEVLARIAV--------AGKKRVNKVYDPAAGSGSLL---L 240

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                 G  +    +   +GQE+   T+ +    M +  +  +       ++  G TL+ 
Sbjct: 241 KFAKVLGKEN----VGGFYGQEINLTTYNLARINMFLHDVNYE-----KFSLAHGDTLTD 291

Query: 285 -DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
              +  + F   +SNPP+  KWE D + +    +     RF P   L   S   + F MH
Sbjct: 292 PQHWDDEPFEAIVSNPPYSIKWEGDANPLLINDE-----RFAPAGVLAPKSKADLAFTMH 346

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + + L +     G AAIV     L+ G A   E++IR++L++N+ ++A++ LP DLFF T
Sbjct: 347 ILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVDAVIQLPPDLFFGT 399

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            IAT + +L   K +     V  ++A++ +  +   G K +++ D Q + ILD    R
Sbjct: 400 TIATCIIVLKKSKAD---NAVLFVDASNEFKRV---GNKNKLLPDHQ-KNILDALEQR 450


>gi|194467963|ref|ZP_03073949.1| type I restriction-modification system, M subunit [Lactobacillus
           reuteri 100-23]
 gi|194452816|gb|EDX41714.1| type I restriction-modification system, M subunit [Lactobacillus
           reuteri 100-23]
          Length = 549

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 206/502 (41%), Gaps = 95/502 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--AFGGS 65
           A  + + +W+ A  L  +   +++   IL F   R L    E  +S V  K +  A G S
Sbjct: 4   AQEITSQLWEMANRLRSNMDASEYRNYILGFMFYRYLSEHQE--KSMVENKLIDVAEGQS 61

Query: 66  NID--------------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIAS 106
             D              LE      GY+     EY+ +T+      N +     +  + S
Sbjct: 62  VNDAYKEQASGEDLNDYLEEIASSLGYAI--APEYTWATIVDKVNNNTIAPSDYQDMLDS 119

Query: 107 FSDNAK----------AIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           F+ N             IF+D +       +ST AR   A  L  I      IE   +  
Sbjct: 120 FNHNLNLNRNAKMDFHGIFDDMNLGNSRLGNSTSAR---AKALTDIVNLVDQIEYKDENG 176

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIR-T 208
            D ++ +IY +LI  F     + A +F TP  V   LA  + L+ D       PG+    
Sbjct: 177 HD-ILGDIYTYLIAEFAGNSGKKAGEFYTPHQVSEILAKLVTLNLD-------PGIKNPE 228

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YD  CG+G  L    + V +          L   GQEL   T+ +    +++  +    
Sbjct: 229 VYDFACGSGSLLLTVQDQVPNRR--------LKYAGQELNTTTYNLARMNLMMHDV---- 276

Query: 269 RRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            R  +  ++   TL  D   G           F   ++NPP+  +W+ + + +    K+ 
Sbjct: 277 -RYQNMTLKNADTLEMDWPDGIDEHGVDHPHSFDMVVANPPYSARWDNNDNKL----KDP 331

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               +G   PK +     FL+H    L+      G  AIVL    LF G   + E++IR+
Sbjct: 332 RFKEYGALAPK-TKADYAFLLHGLYHLK----QDGTMAIVLPHGVLFRG---AKEAQIRK 383

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LLE + I+AI+ LP +LF+ T I T + +L  +K +E +  V  I+A+  +     +GK
Sbjct: 384 ALLEKNQIDAIIGLPANLFYSTGIPTVVLVL--KKNKENK-DVLFIDASKNFE----KGK 436

Query: 440 KRRIINDDQRRQILDIYVSREN 461
            + ++  +   +I+  Y  R++
Sbjct: 437 NQNVLRKEDIDKIIGTYKERKD 458


>gi|329118872|ref|ZP_08247568.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465063|gb|EGF11352.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 577

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 134/306 (43%), Gaps = 49/306 (16%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           GL+    +N    + H       ++ ++YE+ + RF     +    + TP+ +V L  AL
Sbjct: 207 GLIQLFSQN--TFQSHGTLTAKDILGHVYEYFLGRFALAEGKRGGQYFTPKAIVSLIVAL 264

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L           P   R +YDP  G+GGF       +    +H      +  +GQE    
Sbjct: 265 L----------EPYQGR-VYDPAMGSGGFFIQTERFIR---AHQGNTGNISIYGQEKNRT 310

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPF-GKK 304
           T  +    M I  LE         N  +G+    D FT      ++  + ++NPPF    
Sbjct: 311 TWKLAAMNMAIHGLEY--------NFGKGNA---DTFTAPQHLDQKMDFVMANPPFNASD 359

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  ++ A +         R+  G P   + +  +L H+ + L       GR A++L++  
Sbjct: 360 WWSEELAGDP--------RWQYGTPPEGNANYAWLQHMLHHLA----PAGRMALLLANGS 407

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           +      SGE +IRR L++ DL+EA++ALP  LF  T I   +WIL   K + ++G+   
Sbjct: 408 M--SSQSSGEGDIRRALIQADLVEAMIALPGQLFTNTQIPACIWIL--HKAKPQKGQTLF 463

Query: 425 INATDL 430
           I+A ++
Sbjct: 464 IDARNM 469


>gi|291614892|ref|YP_003525049.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1]
 gi|291585004|gb|ADE12662.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1]
          Length = 689

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 140/315 (44%), Gaps = 52/315 (16%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++ + F+ I   P      +   IYE+ +  F     +   +F TPR VV L   ++ +P
Sbjct: 141 QLLRTFADI---PADATGDLFGQIYEYFLSEFARSEGQKGGEFFTPRSVVRLMVEII-EP 196

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                         ++DP CG+GG    +   +A+             H +EL+     V
Sbjct: 197 HGG----------KVFDPACGSGGMFVQSAQFIAE-------------HRKELKGSESGV 233

Query: 255 CVAGM-LIRRLESDPRRDLSKN-----IQQGSTLSKDLFTG-KRFHYCLSNPPFG----- 302
            V G    R   +  + +L+ N     I+Q +T  +D +     F Y L+NPPF      
Sbjct: 234 YVCGQEKTRDTVNLAKMNLAVNGLRGEIKQANTYYEDPYQSFGAFDYVLANPPFNVDDVS 293

Query: 303 -KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
               EKDK  +         ++ +   G   + +G+ L++   A  L+      GRAA+V
Sbjct: 294 LSSVEKDKRFNTYGIPRNKSKVKKADAGKETVPNGNYLWINLFATSLK----AQGRAALV 349

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +++S      A   E++IR+ L+E +LI A++ LP+++F+   +   LW     KT++  
Sbjct: 350 MANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTLPATLWFFDKAKTDD-- 404

Query: 420 GKVQLINATDLWTSI 434
            K+  I+A +++T I
Sbjct: 405 -KILFIDARNIFTQI 418


>gi|224023386|ref|ZP_03641752.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM
           18228]
 gi|224016608|gb|EEF74620.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM
           18228]
          Length = 502

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 186/453 (41%), Gaps = 66/453 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IWK A+ L G+   +++  V+L    L+ +       R  V+   L   G   + +    
Sbjct: 16  IWKAADLLRGNLDASEYKSVVLGLIFLKYIS-----DRFEVKYHELLEEGDGFEEDKDEY 70

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE 128
            +   F+   E   + +    T+      I +  DNA  + E  +           AR E
Sbjct: 71  TSENIFFVPQEARWTVV----TKAAHTPEIGTAIDNAMRLIEKENPRLKGILPKNFARPE 126

Query: 129 -KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L  +   F+ I++        ++   YE+ + +F     + A +F TP  +V   
Sbjct: 127 LDKRRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGKLAGEFYTPACIVRTL 186

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L           P   R +YDP CG+GG    +   + +   H      +   GQ+ 
Sbjct: 187 VEVL----------QPYSGR-VYDPCCGSGGMFVQSAKFINE---HQGNINNISVFGQDS 232

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDLFTGKRFHYCLSNPPFG-KK 304
            P T  +    + IR +E+D  +  +      Q  TL  D        Y L+NPPF    
Sbjct: 233 NPTTWKMAQMNLAIRGIEADLGKFAADTFFDDQHPTLKAD--------YILANPPFNLSD 284

Query: 305 WEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           W  DK  D V          R+  G+P   + +  ++ H+ +   L P+G  R  +VL++
Sbjct: 285 WGADKLQDDV----------RWKYGIPPSGNANFAWIQHMIH--HLSPHG--RIGMVLAN 330

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L       GE  IR  +++ DL+E IV +P+ LF+ T I   LW L+  +++++ GK+
Sbjct: 331 GAL--SSQSGGEGTIRENIIKADLVECIVTMPSQLFYTTGIPVSLWFLN--RSKKQIGKI 386

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
             I+A  + T +      R++   D+++ I  I
Sbjct: 387 LFIDARQMGTMV-----TRKLRELDEKKDIQRI 414


>gi|313678340|ref|YP_004056080.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
 gi|312950090|gb|ADR24685.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
          Length = 892

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 171/377 (45%), Gaps = 51/377 (13%)

Query: 106 SFSDNAKAIFEDF--DFSSTIARL--EKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYE 160
           S +D  K++F+D    F   +++L  +      KI      I   P T  D  V+  IYE
Sbjct: 137 SVNDEHKSLFKDLFVKFERDLSKLGSDTNEQTKKISSLLDIINDIPSTNQDYDVLGYIYE 196

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI RF S   + A +F TP  V  L + ++     A   +   +I+ +YDPT G+G  L
Sbjct: 197 YLIARFASSAGKKAGEFYTPHKVSELMSKII-----AYHLKDREVIK-VYDPTSGSGSLL 250

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
              + H     ++   P  +  + QEL+ E   +    ++++ +   P    ++N   G 
Sbjct: 251 I-TIGHEFKKYNNGDSP--VSYYAQELKAEVFNLTRMNLIMKNIS--PTEIHARN---GD 302

Query: 281 TLSKD--LFTGKRFHY--------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           TL +D  +F    F           +SNPP+ +KW   + +++  +          G+  
Sbjct: 303 TLEQDWPMFEDNDFSSYKHLSVDAVVSNPPYSQKWNSKEHSLDPRY-------VEYGIAP 355

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H  +   + P+G    AIVL    LF G +   E +IR+ L++   I+AI
Sbjct: 356 ESKADYAFLLH--DLYHVQPDG--IMAIVLPHGVLFRGNS---EGQIRKNLIQKQQIDAI 408

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T I T + IL   ++E+    +  ++A+ L+     +G K+        +
Sbjct: 409 IGLPVNMFYGTEIPTIIMILKKHRSEK---DILFVDASKLYV----KGDKKNEFTKSHVK 461

Query: 451 QILDIYVSR-ENGKFSR 466
           +I D+   R E   FSR
Sbjct: 462 KIADVVNHRIEIENFSR 478


>gi|148827015|ref|YP_001291768.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittGG]
 gi|148718257|gb|ABQ99384.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittGG]
          Length = 558

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 210 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 258

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 259 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 315

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 316 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 361

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+     L PNG  + A++L++  +      + E EIR+ ++  DLIE +VA
Sbjct: 362 NANYAWIQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLIECMVA 415

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 416 LPGQLFTNTQIPACIWFLNCNK--KRKGEVLFIDA 448


>gi|46019874|emb|CAE52400.1| putative restriction-modification enzyme type I M subunit
           [Streptococcus thermophilus]
          Length = 537

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 203/481 (42%), Gaps = 66/481 (13%)

Query: 8   AASLANFIWKNAEDLWG-----DFKHTDFGKVILPFTLLRRLECALE---------PTRS 53
           A SL   +W +A+ L G     ++K+   G +   +   ++L    E         P RS
Sbjct: 8   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDKQLREVYEQENGKTDTFPERS 67

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            +   ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 68  TLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNELE 127

Query: 112 K------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +       +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 128 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 185

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +      ++ +ES      +YDP  G+G  + +
Sbjct: 186 IGMFAAGAGKKAGEFYTPQAVSRIMSEIT-----SIGQESRVPFH-IYDPAMGSGSLMLN 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++      H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 240 IRRYLIHPNQVHY-------HGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 287

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG   PK S     FL+
Sbjct: 288 DADWPSEEPYQFDSVVMNPPYSVKWS----AADKFLSDPRFERFGKLAPK-SKADFAFLL 342

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 343 HGFYHLK----ESGTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIFFG 395

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL  +K   RR  V  I+A+  +   +N+     ++ D+   +I+  Y  RE
Sbjct: 396 TSIPTTVIIL--KKNRSRR-DVLFIDASQDFEKQKNQN----VLLDEHIDKIVSTYKKRE 448

Query: 461 N 461
           +
Sbjct: 449 D 449


>gi|330723247|gb|AEC45617.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis MCLD]
          Length = 906

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 125/520 (24%), Positives = 218/520 (41%), Gaps = 98/520 (18%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  T +   L N IW+ A ++ G  + T++   +L     + +    E       E +L 
Sbjct: 11  TNKTFTKQELGNKIWEAANEMRGSLEITEYKNFLLELIFYKTISQRFE-------EWFLK 63

Query: 62  FGGSNIDL---------------------------ESFVKVAGYSFYNTSEYSLSTLGST 94
           + G+  D+                           ES  K  GY  +   +Y  S+    
Sbjct: 64  YNGNIEDIQWLNDDYYEDNSSIKSPYSKNEYEEIKESANKNLGY--FIQHQYLYSSWMKD 121

Query: 95  NTRNN----LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG-------- 142
           N RN     L   I SF  N +   E+  F +    L  +  LYK+  N +         
Sbjct: 122 NARNFSASLLNRSINSFDSNLRGKSENL-FENIFKTL--SDELYKLSTNEAEQTKKLKKL 178

Query: 143 IELHPDTVPDR-----VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           IE+  D +P +     ++  +YE+LI +F S   +   +F TP ++     +LL+    A
Sbjct: 179 IEIIKD-IPVKKGQYDILGFVYEYLIGKFASSAGKKGGEFYTPHEI-----SLLMAEIVA 232

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
              +    I+ +YDPT G+G  L   +N        +K    +  + QE+   T+ +   
Sbjct: 233 FHLKHKDNIK-IYDPTSGSGSLL---LNIGEVFQKFNKKKHSVTYYAQEINESTYKLTKM 288

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKD 310
            +++  +            +   TL +D    K       R    +SNPP+  KW+ +  
Sbjct: 289 NLILHGVNVSEIH-----ARNADTLKQDWPIDKINSTEPLRVDSVVSNPPYSLKWDTENA 343

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             +K  ++  +       PK +     FL+H  +   + P+G    AIVL    LF    
Sbjct: 344 ESDKRFRSYAVA------PK-AKADFAFLLH--DLYHISPDGI--VAIVLPHGVLF---R 389

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           G  E  IR  L+EN  I++I+ LP+D+F+ T+I+T + IL  RKT + + ++  ++A+ L
Sbjct: 390 GGNEKIIRERLIENAEIDSIIGLPSDIFYGTSISTIIVILK-RKTNDEKNQILFVDASKL 448

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
           +     EGKK + +     ++I D   ++ E   FSR++D
Sbjct: 449 FVK---EGKKNK-LEISHIKKIADTVNNKIELKDFSRLVD 484


>gi|89902764|ref|YP_525235.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89347501|gb|ABD71704.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 514

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 50/345 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR +V L   ++L+P              ++DP 
Sbjct: 161 VLGHVFEYFLGEFALAEGKQGGQFYTPRSIVEL-LVVMLEPYKG----------RVFDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     +I  I +  GQE    T  +    + IR +++       
Sbjct: 210 CGSGGMFVQSEKFVTE--HQGRINDISI-FGQESNQTTWRLAKMNLAIRGIDASQ----V 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL----GRFGPGL 328
           K   +GS L+ D     +  + ++NPPF    W            NGEL    GR+  G+
Sbjct: 263 KWNNEGSFLN-DAHKDVKADFIIANPPFNVSDW------------NGELLRKDGRWQYGV 309

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLI 387
           P   + +  +L H  +   L PNG  RA +VL+   L +    SGE +IR+ ++ + +LI
Sbjct: 310 PPTGNANFAWLQHFNH--HLAPNG--RAGVVLAKGALTS--KSSGEGDIRKAMVVDGNLI 363

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           + IV LP  LF  T I   LW ++  +     R+G++  I+A +L   I    ++ R ++
Sbjct: 364 DCIVNLPAKLFLNTQIPAGLWFMNRARNNGHPRKGEILFIDARNLGHLIN---RRTRELS 420

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
           D+  +++  +Y +   G+ S   D + F    + + R   + ++L
Sbjct: 421 DEDIQKVASVYHAWRTGE-SEYADEKGF-CASVPLARVAELDYVL 463


>gi|150389394|ref|YP_001319443.1| type I restriction-modification system, M subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949256|gb|ABR47784.1| type I restriction-modification system, M subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 858

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 139/317 (43%), Gaps = 49/317 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F  E  + A +F TP  V  +   ++    +         I+++YDPT
Sbjct: 179 ILGDAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIVAKTTE---------IKSIYDPT 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L     H++           L  +GQE    T+ +    +L+  +     R   
Sbjct: 230 VGSGSLLLTVKKHLSKDRQKD-----LSYYGQEKNTATYNLTRMNLLLHGV-----RPEK 279

Query: 274 KNIQQGSTLSKDL-------FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRF- 324
             I+ G TL  D          G +F   + NPP+  + W K    V          RF 
Sbjct: 280 MTIKNGDTLGNDWPEDPENPNEGVQFDAVVMNPPYSAQNWNKAGLKVSDP-------RFE 332

Query: 325 -GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            G  LP  S G   FL+H    L       G   IVL    LF G   S E EIR+ L++
Sbjct: 333 IGGTLPPDSKGDYAFLLHGLYHL----GTKGTMGIVLPHGVLFRG---SSEGEIRKKLID 385

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            + I+A++ LP++LF  T I   + IL  +K       V +I+A++ +  +     K+ +
Sbjct: 386 KNQIDAVIGLPSNLFTNTGIPVAIIIL--KKNRNISDPVLMIDASNNFIKV----GKQNV 439

Query: 444 INDDQRRQILDIYVSRE 460
           + +    QI+D+Y+S++
Sbjct: 440 LQERDIAQIVDVYISKD 456


>gi|329123370|ref|ZP_08251934.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116]
 gi|327470952|gb|EGF16407.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116]
          Length = 443

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 35/277 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 95  ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-MYDPA 143

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 144 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 200

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            +  Q   + K      +  + ++NPPF       +  V+         R+  G P   +
Sbjct: 201 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLVDDP-------RWAYGTPPKGN 247

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VAL
Sbjct: 248 ANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVAL 301

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           P  LF  T I   +W L+  K  +R+G+V  I+A  +
Sbjct: 302 PGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQI 336


>gi|291320525|ref|YP_003515789.1| type I restriction modification system modification (methylase)
           protein [Mycoplasma agalactiae]
 gi|290752860|emb|CBH40835.1| Modification (Methylase) protein of type Irestriction modification
           system [Mycoplasma agalactiae]
          Length = 892

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 140/568 (24%), Positives = 248/568 (43%), Gaps = 83/568 (14%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFS 141
           S+    N +    ++  S +D  K++F+D    F   +++L     E+  ++  +    +
Sbjct: 120 SSFNIQNFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGAETNEQTKVISDLLDIIN 179

Query: 142 GIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            I   P T  D  V+  IYE+LI RF S   + A +F TP +V  L + ++     A   
Sbjct: 180 DI---PSTNQDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIV-----AYHL 231

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           +    I+ +YDPT G+G  L           S +   P+   + QEL+ E   +    ++
Sbjct: 232 KDREFIK-VYDPTSGSGSLLLTIGQEFKKYNSGN--SPV-SYYAQELKAEVFNLTRMNLI 287

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFH--------YCLSNPPFGKKWEKDKD 310
           ++ +   P    ++N   G TL +D  +F    +           +SNPP+ + W  +K 
Sbjct: 288 MKNIS--PTEIHARN---GDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKH 342

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            ++  +          G+   +     FL+H  +   + P+G    AIVL    LF G +
Sbjct: 343 TLDPRY-------IEYGIAPKTKADYAFLLH--DLYHVQPDG--IMAIVLPHGVLFRGNS 391

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              E +IR+ L++   I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L
Sbjct: 392 ---EGQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKL 445

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSR--MLDYRTFGYRRIKVLRPLRMS 487
           +     EGK  +  +    ++I D+  +R E   FSR  +LD        + + R +   
Sbjct: 446 YVK---EGKNNK-FSKSHIKKIADVVNNRIEIENFSRRVLLDEIVANDYNLNISRYIDNF 501

Query: 488 FILDKTGLARL-EADITWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAE-SFVKESIKSNE 544
              ++  L  L    I+  +L  L   F L   LK  + +I    + E    KE I S  
Sbjct: 502 KKQEQHDLYSLMHGGISKEELEKLDNFFGLFTGLKDKLFKINANNYYELKVAKEDINS-- 559

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPR-----ADPVTDVNGEWIPDTNLTEYENVPYLESI 599
             T+K   +   +  +IN+F +K  +      + VT V  E     NL E+E     E++
Sbjct: 560 --TIKGDWN---VSEYINSFDKKGTKFLKFFKNFVTSV--EQFEHINLVEFE-----EAL 607

Query: 600 QDYFVREV-SPHVPDAY-IDKIFIDEKD 625
            DY    + S  + DAY I +IF++  D
Sbjct: 608 TDYIFENMDSIPLVDAYDIYQIFVNNFD 635


>gi|295107905|emb|CBL21858.1| type I restriction system adenine methylase (hsdM) [Ruminococcus
           obeum A2-162]
          Length = 852

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 41/273 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI +F S   + A +F TP +V  L + ++     A        I+ +YDPT
Sbjct: 162 VLGFIYEYLIEKFASNAGKKAGEFYTPHEVSFLMSEIV-----AHHLRDRNEIK-IYDPT 215

Query: 214 CGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  L +    VA   GS + I      + QEL+  T+ +    +++R ++  P   +
Sbjct: 216 SGSGSLLINIGRSVAKYVGSDNNIKY----YAQELKENTYNLTRMNLIMRGIK--PDNIV 269

Query: 273 SKNIQQGSTLSKD-----------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           ++N   G TL +D            +        +SNPP+ + W    D   KEH +   
Sbjct: 270 TRN---GDTLEEDWPFFDDNDPVNTYDPVYVDAVVSNPPYSQVW----DPANKEH-DPRY 321

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RFG   PK       FL+H  +   + P+G     IVL    LF G     E EIR+ L
Sbjct: 322 SRFGLA-PK-GKADYAFLLH--DLFHMKPDG--VMTIVLPHGVLFRG---GEEGEIRKKL 372

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +EN+ I+ I+ LP ++F+ T I T + +L  ++
Sbjct: 373 IENNHIDTIIGLPANIFYGTGIPTIVMVLKQKR 405


>gi|262198182|ref|YP_003269391.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium
           ochraceum DSM 14365]
 gi|262081529|gb|ACY17498.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium
           ochraceum DSM 14365]
          Length = 860

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 132/292 (45%), Gaps = 41/292 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   YE+LI  F     +   +F TPR VV L    L DP        PGM   +YDP 
Sbjct: 180 MLGAAYEYLIGEFADSAGKKGGEFYTPRPVVRL-IVRLSDP-------RPGM--RVYDPC 229

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GG L  A  +V +   H      L  +GQE       +    ML+  +         
Sbjct: 230 SGSGGMLILARQYVQE---HGGDAGSLGLYGQEDNGGVWTISQMNMLLHGVSD------- 279

Query: 274 KNIQQGSTLSKDLF----TGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +I+ G TL + L     +G+  RF   ++NPPF + +  D+  + +  + G      P 
Sbjct: 280 ADIRNGDTLHEPLHIDPASGELLRFDRIITNPPFAQNYSPDELPLPERFRFG----MCPH 335

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K +D   ++  H+   L      GG A  V+    LF G     E  IR  +LE DL+
Sbjct: 336 AGKKAD--WMYAQHMLAAL----APGGMAVTVMPHGVLFRGGV---EQAIRSRVLEADLV 386

Query: 388 EAIVALPTDLFFRTNIATYLWILS--NRKTEERRGKVQLINATDLWTSIRNE 437
           EA++ LP +LF+ T+I   + +L     K  ER+G+V  ++A+D + + R +
Sbjct: 387 EAVIGLPPNLFYGTSIPACVLVLRAPEAKPPERQGRVLFVDASDEFHAARAQ 438


>gi|251771139|gb|EES51722.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 525

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 187/443 (42%), Gaps = 75/443 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W+ A+ L  +    ++  V+L    L+ +  A E     +    +A      D + +  
Sbjct: 21  LWQAADKLRNNMDAAEYKHVVLGLIFLKYVSDAFEEFHDRLISTEIAAEADPEDPDEYR- 79

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNA--KAIFEDFDFSSTIARL 127
            A   F+   E   STL +   R  +     ++ +A   +N   KAI    D++ T    
Sbjct: 80  -AENIFWVPPEARWSTLQAHAKRPEIGKIIDDAMVAIERENKSLKAILPK-DYARTSLDK 137

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++ G L  +     G+    D     ++  +YE+ + +F S   +    F TPR VV + 
Sbjct: 138 QRLGELVDLVGTI-GLG-QKDHRSKDILGRVYEYFLSQFASAEGKRGGQFYTPRSVVSVL 195

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L          +P   R ++DP CG+GG    +   +   G   +I  I + +GQE 
Sbjct: 196 VEML----------APYKGR-VFDPCCGSGGMFVQSEKFIEAHGG--RIGDISI-YGQES 241

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF------ 301
              T  +    + +R +E++    L K  +   +  +DL    +  Y L+NPPF      
Sbjct: 242 NNTTWKLAAMNLALRGIEAN----LGK--ENDDSFHRDLHPDLKADYILANPPFNSSDWG 295

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGRAA 357
           G++  +DK             R+  G+P   + +      F+ HLA      PNG   A 
Sbjct: 296 GERLREDK-------------RWVYGVPPTGNANYAWVQNFIYHLA------PNG--VAG 334

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS------ 411
            VL++  L + +  S E EIR+ ++E D+++ IVA+P  LF+ T I   LW +S      
Sbjct: 335 FVLANGSLSSNQ--SNEGEIRKSMVEADIVDCIVAMPGQLFYSTQIPVSLWFVSRNKKNG 392

Query: 412 ----NRKTEERRGKVQLINATDL 430
                R   +R G++  I+A  L
Sbjct: 393 KGVEGRPLRDRSGEILFIDARKL 415


>gi|156932818|ref|YP_001436734.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531072|gb|ABU75898.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894]
          Length = 569

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 53/332 (15%)

Query: 139 NFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           NFS  E + + +  +   ++ ++YE+ + +F     +    + TP+ +V L   +L    
Sbjct: 187 NFSNPEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML---- 242

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHH----KIPPILVPHGQELEPE 250
                  P   R +YDP  G+GGF   +   + +  G  H    +    +  +GQE  P 
Sbjct: 243 ------QPYNGR-VYDPAMGSGGFFVSSDRFIEEHAGEKHYNAAEQKQKISVYGQESNPT 295

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK 309
           T  +    M IR +      D +   +   TL  D     R  + ++NPPF  K+W   K
Sbjct: 296 TWRLAAMNMAIRGI------DFNFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAK 349

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             +E +       R+  G P   + +  ++ H+ +   L P G    A++L++  + +  
Sbjct: 350 --LENDV------RWKYGTPPQGNANFAWMQHMIH--HLAPKGS--MALLLANGSMSSNT 397

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQL 424
             + E EIRR L+E DL+E +VALP  LF  T I   +W L+  KT       R+G+V  
Sbjct: 398 --NNEGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWFLTKDKTGGNGKAHRKGEVLF 455

Query: 425 INATDLWTSIRNEG-KKRRIINDDQRRQILDI 455
           I+A       R  G  K R++ D  R  I  I
Sbjct: 456 IDA-------RKIGFMKDRVLRDFTREDIAKI 480


>gi|254415510|ref|ZP_05029270.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177691|gb|EDX72695.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 513

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 120/261 (45%), Gaps = 49/261 (18%)

Query: 149 TVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           T PD +  +S+IYE L++R GSE ++ A +F TPR V+     ++           P + 
Sbjct: 153 TNPDDIYTVSHIYEDLLKRLGSE-NKMAGEFYTPRSVIRFMVEVI----------DPQIG 201

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRR 263
            T+YDP CGT GFL +A  H        K   IL  H   GQE +P    +    M++  
Sbjct: 202 ETVYDPACGTCGFLLEAFLHTQKQEKTAKDREILQRHTFVGQEKKPLPALLGTMNMVLHG 261

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +       L  +I++ +TL++D+  G     + F   L+NPPFG K              
Sbjct: 262 V-------LVPDIRRRNTLAEDIRDGSGLFDETFDVILTNPPFGGK-------------- 300

Query: 319 GELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
            E  R     P K +   +LFL H+  KL+  P  G R  IV+    LF G A +    +
Sbjct: 301 -ENARIQKNFPVKANATELLFLQHVMKKLK--PKQGARCGIVVPEGTLFRGGAFAT---V 354

Query: 378 RRWLLENDLIEAIVALPTDLF 398
           ++ LL +  +  +V+LP   F
Sbjct: 355 KKELLHDFNLFMVVSLPPGTF 375


>gi|260581409|ref|ZP_05849223.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae RdAW]
 gi|12643776|sp|Q57168|T1MH_HAEIN RecName: Full=Putative type I restriction enzyme HindVIIP M
           protein; Short=M.HindVIIP
 gi|1574745|gb|AAC22936.1| type I modification enzyme (hsdM) [Haemophilus influenzae Rd KW20]
 gi|260091951|gb|EEW75900.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae RdAW]
          Length = 443

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     + +  + TP+ +V L   +L           P   R +YDP 
Sbjct: 95  ILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 143

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 144 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 200

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NP F  K+W  +  A +         R+  G P   
Sbjct: 201 DSFTQPQHIDK------KMDFIMANPHFNDKEWWNESLADDP--------RWAYGTPPKG 246

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 247 NANFAWLQHMI--YHLSPNG--KIALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 300

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +W L+  K  +R+G+V  I+A  +
Sbjct: 301 LPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQI 336


>gi|296454640|ref|YP_003661783.1| type I restriction system adenine methylase HsdM [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184071|gb|ADH00953.1| type I restriction system adenine methylase HsdM [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 855

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 142/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 ARNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEAG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+E   I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +T    EGK
Sbjct: 373 NLVEKHHIQAIIGLPANIFFGTGIPTIVMVLRKHRDDDH---VLIVDASKYFTK---EGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDAVTGNRDVDKFSRLV 455


>gi|91773202|ref|YP_565894.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91712217|gb|ABE52144.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 519

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 142/313 (45%), Gaps = 41/313 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +++E+ +  F     +    F TPR VV L   +L +P +            ++DP 
Sbjct: 159 ILGHVFEYFLGEFALAEGKRGGQFYTPRSVVELLVEML-EPYNG----------RVFDPC 207

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   VAD     K+  I + +GQE    T  +    + IR ++S       
Sbjct: 208 CGSGGMFVQSEKFVAD--HRGKVNDISI-YGQESNQTTWRLAKMNLAIRGIDSSQ----V 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K   +GS L+ D     +  Y ++NPPF    W  D   + K+      GR+  G+P   
Sbjct: 261 KWNNEGSFLN-DSHKDLKADYVIANPPFNDSDWSGD--LLRKD------GRWKYGVPPAG 311

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H      L PNG  +A  VL+   L +    SGE +IR+ L+E+ +++ IV 
Sbjct: 312 NANYAWIQHFL--YHLSPNG--QAGFVLAKGSLTS--KSSGEGDIRKELVESRMVDCIVN 365

Query: 393 LPTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           LP  LF  T I   LW LS    N K   R  ++  I+A ++   I    ++ R  + + 
Sbjct: 366 LPPKLFLNTQIPASLWFLSRNKANGKYRNRTDEILFIDARNMGHLIN---RRTREFSPED 422

Query: 449 RRQILDIYVSREN 461
            +++ D Y +  N
Sbjct: 423 IQKVADTYHNWRN 435


>gi|268323495|emb|CBH37083.1| putative type I restriction-modification system DNA methylase (M
           protein) [uncultured archaeon]
          Length = 517

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 43/314 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +++E+ +  F     +    F TPR VV L   +L +P +            ++DP 
Sbjct: 159 ILGHVFEYFLGEFALAEGKKGGQFYTPRSVVQLLVEML-EPYNG----------RVFDPC 207

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   VA    H      +  +GQE    T  +C   + IR  +S       
Sbjct: 208 CGSGGMFVHSEKFVA---QHQGQVNDISIYGQESNQTTWRLCKMNLAIRSTDSSQ----V 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           K   +GS L+ D     +  Y ++NPPF    +   D + K+      GR+  G+P   +
Sbjct: 261 KWNNEGSFLN-DAHKDLKADYVIANPPFNDS-DWSGDLLRKD------GRWNYGVPPTGN 312

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  ++ H      L P+G  +   VL+   L +  AG GE  IR+ L+E  LI+ IV L
Sbjct: 313 ANYAWIQHFL--YHLSPSG--QTGFVLAKGALTSKTAGEGE--IRKELVEARLIDCIVNL 366

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRNEG----KKRRIINDD 447
           P  LF  T I   LW LS  K     GK +  N TD  L+   RN G    ++ R  + +
Sbjct: 367 PPKLFLNTQIPASLWFLSRNKA---NGKYR--NRTDELLFIDARNMGHLINRRTREFSKE 421

Query: 448 QRRQILDIYVSREN 461
           +  +I + Y +  N
Sbjct: 422 EIEKIAETYHNWRN 435


>gi|322689708|ref|YP_004209442.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461044|dbj|BAJ71664.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 855

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 TRNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEPG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +     +GK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDH---VLVVDASKYFAK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDTVSENRDVDKFSRLV 455


>gi|331654119|ref|ZP_08355119.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
 gi|331047501|gb|EGI19578.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
          Length = 535

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 129/511 (25%), Positives = 217/511 (42%), Gaps = 86/511 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECALE------- 49
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E A +       
Sbjct: 1   MTEF--DKQKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58

Query: 50  PTRSAVREK---YLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLGST------N 95
           P +   + +    L +  +  D+  F K+     +   E      S++ +  T      N
Sbjct: 59  PKQKEGKRQPPLTLWYEQNEQDISEFEKLMRRKVHYVIEPQYLWTSIAEMARTQHVKLLN 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LH 146
           T      YI   SF+   + +F + + +S     EK G  Y     ++CK    I   L 
Sbjct: 119 TLQAGFKYIEEESFASVFRGLFSEINLAS-----EKLGKTYGERNDRLCKIIKEIADGLK 173

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM 205
             +     + + YE+LI +F +   + A +F TP+ +  + +A++ LD  +    +    
Sbjct: 174 QFSTNSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQR-SH 232

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           I +++D  CG+G  L +    +      H I  I   +GQE    T+ +    ML+  + 
Sbjct: 233 IDSVFDFACGSGSLLLNIRKRMG----QHGIGKI---YGQEKNITTYNLARMNMLLHGV- 284

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKD-AVEKEH 316
               +D   +I  G TL  D    +        +F   ++NPPF  +WE  +  A +   
Sbjct: 285 ----KDSEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPSETLADDVRF 340

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           KN        GL   S     FL+H  + L+      G  AI+L    LF  R+G+ E+ 
Sbjct: 341 KN-------YGLAPKSAADFAFLLHGFHFLK----EDGVMAIILPHGVLF--RSGT-EAR 386

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  LL++  I+ I+ LP +LFF T I   + +L   K  +    +  INA + +    +
Sbjct: 387 IRTKLLKDGHIDTIIGLPANLFFSTGIPVCILVLKKCKKPD---DILFINAAEHF----D 439

Query: 437 EGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
           +GK++  I+ D  ++I+D Y  R E  +++R
Sbjct: 440 KGKRQNQISSDHIKKIIDAYKFRKEEPRYAR 470


>gi|23466326|ref|NP_696929.1| hypothetical protein BL1782 [Bifidobacterium longum NCC2705]
 gi|23327081|gb|AAN25565.1| HsdM [Bifidobacterium longum NCC2705]
          Length = 855

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 TRNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEPG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +     +GK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDH---VLVVDASKYFAK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDTVSENRDVDKFSRLV 455


>gi|227546693|ref|ZP_03976742.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212839|gb|EEI80718.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 855

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 TRNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEPG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +     +GK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDH---VLVVDASKYFAK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDTVSENRDVDKFSRLV 455


>gi|49658897|emb|CAF28523.1| putative HsdM-like N-methyl transferase [Yersinia
           pseudotuberculosis]
          Length = 568

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 130/288 (45%), Gaps = 42/288 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 204 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYKGR-VYDPA 252

Query: 214 CGTGGFLTDAMNHVADCGS--HHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   + +     H+ +      +  +GQE  P T  +    M IR +    
Sbjct: 253 MGSGGFFVSSDRFIEEHAGEKHYNVAEQKRNISVYGQESNPTTWKLAAMNMAIRGI---- 308

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D +   +   TL  D     R  + ++NPPF  K+W   K         G++ R+  G
Sbjct: 309 --DFNFGKKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAK-------LEGDV-RWQYG 358

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G    A++L++  + +    + E EIRR L+E DL+
Sbjct: 359 TPPQGNANFAWMQHMIH--HLAPKGS--MALLLANGSMSSNT--NNEGEIRRNLIEADLV 412

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDL 430
           E +VALP  LF  T I   +W+L+  KT       R+G+V  I+A  +
Sbjct: 413 ECMVALPGQLFTNTQIPACIWLLTKDKTGGNGKAHRKGEVLFIDARQI 460


>gi|187933312|ref|YP_001886270.1| type I restriction-modification system, M subunit [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721465|gb|ACD22686.1| type I restriction-modification system, M subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 529

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 158/368 (42%), Gaps = 59/368 (16%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F D +   +  RL     E+A  L  I K    IE   +   D ++  IYE+LI +F
Sbjct: 136 RGVFNDINLGDS--RLGNSTNERAKSLNNIVKLVDSIEYKGNDGKD-ILGEIYEYLIGQF 192

Query: 167 GSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   +   +F TP  V  +   ++   ++  D LF        ++YDPT G+G  L   
Sbjct: 193 AASAGKKGGEFYTPHQVSKILAKVVTEGVEKSDELF--------SVYDPTMGSGSLLLT- 243

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  G        +   GQEL   T+ +    +++  +  +     +  +    TL 
Sbjct: 244 ------VGQELPKGTPMKYFGQELNTTTYNLARMNLMMHGISYN-----NMVLSNADTLE 292

Query: 284 KDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            D   G         + F   ++NPP+  KW+ D+  + K+ +  E G+  P     S  
Sbjct: 293 SDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSEYGKLAPA----SKA 347

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H    L    N  G  AIVL    LF G A   E +IR  L+  + ++ I+ LP
Sbjct: 348 DYAFILHSIYHL----NKTGTMAIVLPHGVLFRGAA---EGKIREALIGKNYLDTIIGLP 400

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L  +K  E +  +  I+A++ +   +N+   R    D+   +I+ 
Sbjct: 401 ANLFYGTSIPTVILVL--KKNRENK-DILFIDASNDFEKNKNQNNLR----DEDIDKIIK 453

Query: 455 IYVSRENG 462
            Y  R++ 
Sbjct: 454 TYKERKDA 461


>gi|229846817|ref|ZP_04466924.1| type I modification enzyme [Haemophilus influenzae 7P49H1]
 gi|229810306|gb|EEP46025.1| type I modification enzyme [Haemophilus influenzae 7P49H1]
          Length = 576

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 228 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 276

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 277 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 333

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 334 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 379

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  +L+E +VA
Sbjct: 380 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKGIINANLVECMVA 433

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 434 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 466


>gi|163814568|ref|ZP_02205957.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759]
 gi|158450203|gb|EDP27198.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759]
          Length = 889

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 140/311 (45%), Gaps = 52/311 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+L+R F SE  +    F TP +V  +  A ++  D     ++     T+ D
Sbjct: 151 DDIIGDAYEYLMRNFASESGKSKGQFYTPAEVSRI-LAKIIGIDKCTDHDA-----TVCD 204

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A+            P  +  +GQE +  T  +        ++ +     
Sbjct: 205 PACGSGSLLIRALAEA---------PFEISGYGQEKDGSTAGLA-------KMNAVLHNK 248

Query: 272 LSKNIQQGSTLSKDLFTG-------KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
            +  I  G+T S   F         +RF+Y ++NPPF  K W    D ++      E GR
Sbjct: 249 ATIRIMAGNTFSDPQFMKTDNPSELERFNYIVANPPFSLKNWS---DGLK------EFGR 299

Query: 324 F-GPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F G G  P   +G   +LMH+   L+      G+AA++L    LF G A   E+ IR+ +
Sbjct: 300 FSGYGDRPPEKNGDYAWLMHILKTLK----STGKAAVILPHGVLFRGNA---EATIRQTI 352

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           ++   I+ I++LP +LF+ T I   + ++     E R G + +I+A   +     +G K 
Sbjct: 353 VDKGWIKGIISLPPNLFYGTGIPACILVIDKEGAENRAG-IFMIDAGKGYV---KDGSKN 408

Query: 442 RIINDDQRRQI 452
           R+   D  R +
Sbjct: 409 RLREQDIYRIV 419


>gi|323526112|ref|YP_004228265.1| adenine-specific DNA-methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383114|gb|ADX55205.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. CCGE1001]
          Length = 480

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 66/294 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR        +L+D   +L K  P +  T+ DP  
Sbjct: 124 LGDLYEGLLEKNANEKKSGAGQYFTPR--------VLIDSIVSLMK--PKLGETIQDPAA 173

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQELEPETHAVCVAGMLIRRLE 265
           GTGGFL  A +++     H+ +  +         L  HG E+    H + +  +++  L+
Sbjct: 174 GTGGFLIAANHYIR---KHNDLEALSEAAYKKYRLQFHGMEIVQAAHRLGLMNLMLHDLD 230

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           SD     +  I+ G +LS +     +    ++NPPFG K                    G
Sbjct: 231 SDE----TGGIRYGDSLSSEGQQLPKADLIITNPPFGTKK-------------------G 267

Query: 326 PGLPK-------ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            GLP         S+  + FL H+   L+     GGRAA+VL  + LF    G+   +IR
Sbjct: 268 GGLPTRDDFTFPTSNKQLAFLQHIYRALK----PGGRAAVVLPDNVLFESNVGA---DIR 320

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           R L++   +  I+ LPT +F+   + T +   +       RGK    N T LW 
Sbjct: 321 RDLMDKCYLHTILRLPTGIFYAQGVKTNVLFFT-------RGKTDKGNTTGLWV 367


>gi|23335512|ref|ZP_00120747.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Bifidobacterium longum DJO10A]
 gi|189440821|ref|YP_001955902.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum DJO10A]
 gi|189429256|gb|ACD99404.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum DJO10A]
          Length = 855

 Score = 90.5 bits (223), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 TRNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEPG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +     +GK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDH---VLVVDASKYFAK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDTVSENRDIDKFSRLV 455


>gi|91216783|ref|ZP_01253747.1| type I restriction-modification system DNA methylase [Psychroflexus
           torquis ATCC 700755]
 gi|91184944|gb|EAS71323.1| type I restriction-modification system DNA methylase [Psychroflexus
           torquis ATCC 700755]
          Length = 546

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 108/478 (22%), Positives = 199/478 (41%), Gaps = 64/478 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECALEPTRSAVREKYLAFGGSNIDLE 70
           +WK A +L G      +   ILP   L+ +    E   E    A+ +K   +  ++ + +
Sbjct: 16  LWKAANELRGAVAENQYKDYILPLIFLKHISEKYEVRKEELFQALNDKGSDYYTNDTEEQ 75

Query: 71  SFV----------------KVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           ++V                K A + +   N  + ++  L   N  + L+  +A F    K
Sbjct: 76  NYVLEDPDEYLSKNTYIIPKEATWQYLQDNAEQDNIKVL-VDNAFDLLDDTLAEFRPELK 134

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I       S +   + AGL+  + K     + +P +    ++  +YE+ I +F      
Sbjct: 135 GILPRIFVKSQLTPKQVAGLINLLAKPKLSEKENPGS---DILGRVYEYYIGKFAIAEGS 191

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           GA  F TP  +V L   ++ +P              ++D  CG+GG    ++  +   G 
Sbjct: 192 GAGQFFTPSSIVRLLVEMI-EPYQG----------KIFDNACGSGGMFIQSLKFLQAHGG 240

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K   I   +GQE    T  +C   + +R        DLS +++ G +L +D F     
Sbjct: 241 DKKNISI---YGQERYDGTLRLCKMNLALR--------DLSFDVRLGDSLLQDKFPDLEA 289

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPP 350
            + + NPPF       +D  E + +      FG      +DG+   +++    N L    
Sbjct: 290 DFIIVNPPFNVSQWHPEDLPENDPR-----LFGTKEEFTTDGNANYMWMQTFWNHL---- 340

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G AA+V+++  + +     GE  +R+ ++++ +++ IV LP  LF  T I   ++IL
Sbjct: 341 SDTGTAAVVMANGAMTSNT--KGEKNVRQHMVDHGMVDCIVRLPDKLFLTTGIPACIFIL 398

Query: 411 S-NR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           S NR  K  + R +   +   DL    R E +K R+ ++   ++  D Y +  N K S
Sbjct: 399 SKNRDGKDGKHRKRDNEVLFIDLSKHGRMESRKLRVFDEADLQKATDTYHAWRNIKDS 456


>gi|317481749|ref|ZP_07940780.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916806|gb|EFV38197.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 855

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 59/329 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F S   + A +F TP +V  L + ++     A        I  +YDPT G+G
Sbjct: 168 IYEYLISNFASNAGKKAGEFYTPSEVSQLMSEIV-----AWHLAGREEI-NIYDPTSGSG 221

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI- 276
             L      VA    +   P  +  + QEL+  T+ +    +++R +       L  NI 
Sbjct: 222 SLLIHIGQAVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIV 271

Query: 277 -QQGSTLSKD----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            + G TL  D                LF        +SNPP+ + WE          + G
Sbjct: 272 TRNGDTLKSDWPWFDTDETKDETYEPLFVDA----VVSNPPYSQNWEP--------PEPG 319

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR
Sbjct: 320 EDIRFEYGIAPKSKADYAFLLHDLYHLR----DDGIMTIVLPHGVLFRG---GEEGTIRR 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+EN  I+AI+ LP ++FF T I T + +L   + ++    V +++A+  +     +GK
Sbjct: 373 NLVENHHIQAIIGLPANIFFGTGIPTIVMVLRKHRNDDH---VLVVDASKYFAK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
             ++   D +R +  +  +R+  KFSR++
Sbjct: 427 NNKLRASDIKRIVDAVSENRDVDKFSRLV 455


>gi|56476900|ref|YP_158489.1| Type I site-specific deoxyribonuclease, methylase subunit
           [Aromatoleum aromaticum EbN1]
 gi|56312943|emb|CAI07588.1| Type I site-specific deoxyribonuclease,methylase subunit
           [Aromatoleum aromaticum EbN1]
          Length = 543

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 60/374 (16%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFS----GIELHPDTVPDRVMS 156
           SF  N + +F + + +S     +K G  Y     K+C   S    G+ L   +     + 
Sbjct: 136 SFQSNFQGLFSEINLAS-----DKLGRKYEDRNDKLCSIISELARGMSLF--STDTDTLG 188

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESP-GMIRTLYDPTC 214
           + YE+LI +F +   + A +F TP+ +  + +A++ LD  +   KE P   +  ++D  C
Sbjct: 189 DAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEP--KEGPRKKLENVFDFAC 246

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +  + +   G       I   +GQE    T+ +    ML+  +     +D   
Sbjct: 247 GSGSLLLNVRHRMKKAGG-----TIGKIYGQEYNVTTYNLARMNMLLHGV-----KDTEF 296

Query: 275 NIQQGSTLS------KDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-G 325
            I  G TL+      ++    K+  F   ++NPPF  +W+   DA+ ++       RF  
Sbjct: 297 EIYHGDTLANTWDSLRETNPAKKPQFDAVVANPPFSYRWDLG-DAMSEDM------RFKN 349

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+   S     FL+H  + L+      G  AI+L    LF G A   E  IRR LL + 
Sbjct: 350 HGVAPKSAADFAFLLHGLHYLK----DDGVMAIILPHGVLFRGGA---EERIRRKLLIDG 402

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ +V LP +LF+ T I   + +L   K  +    V  INA + +     +GK++  ++
Sbjct: 403 HIDTVVGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHF----EKGKRQNQLS 455

Query: 446 DDQRRQILDIYVSR 459
           D+  ++I+D Y  R
Sbjct: 456 DEHIQRIIDTYQQR 469


>gi|119357295|ref|YP_911939.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354644|gb|ABL65515.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 495

 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 27/255 (10%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ +   +   GA  + TPR ++ +    +           P   +T+ DP 
Sbjct: 127 VKGEIYEGLLEKNAEDTKSGAGQYFTPRALIEIMVKCV----------RPEPRKTIGDPA 176

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGF   A + +       +     + H    G E+ P T  +C+  M +  +     
Sbjct: 177 CGTGGFFLKAYDFITTRYKLDRDEKEFLKHRTFGGNEIVPGTRRLCLMNMFLHNIG---- 232

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +L  N+   ST +     G R+ Y L+NPPFGKK        E+E +   L        
Sbjct: 233 -ELDGNVAVSSTDALVADNGVRYDYVLTNPPFGKKSSMTFTNDEEEQEKESLVYNRQDFW 291

Query: 330 KISDGSML-FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            I+    L FL H+   L++     G+AA+VL  + LF G  G+GE  +R+ LLE   + 
Sbjct: 292 AITANKQLNFLQHIHTILKV----YGQAAVVLPDNVLFEG--GAGEL-VRKKLLETTELH 344

Query: 389 AIVALPTDLFFRTNI 403
            I+ LPT +F+   +
Sbjct: 345 TILRLPTGIFYAQGV 359


>gi|95928603|ref|ZP_01311350.1| type I restriction-modification system, M subunit [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135393|gb|EAT17045.1| type I restriction-modification system, M subunit [Desulfuromonas
           acetoxidans DSM 684]
          Length = 868

 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 203/482 (42%), Gaps = 69/482 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVREKYLAFGGSN 66
            LA  IW++A  +    +  ++   IL F   + L   LE    ++    E   A    +
Sbjct: 5   QLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKLEQFAKSQDFSAEDIRALSEDD 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLST-------LGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            +   F+K     ++   E+  ST           + R+ L ++      + K +FE   
Sbjct: 65  TETVDFIK-RNLGYFIAHEHLFSTWIEQGGDFEVAHVRDALSAFSRLIHTDHKDLFEGI- 122

Query: 120 FSSTIARLEKAG-LLYKICKNFSG-IELHPDTVPD-----RVMSNIYEHLIRRFGSEVSE 172
           F +    L K G    K  K  S  I+L  D   D      V+  IYE+LI  F +   +
Sbjct: 123 FKTLETGLSKLGDTAAKQTKAISELIQLIKDIPMDGRQGYDVLGFIYEYLISMFAANAGK 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + ++   D    KE       +YD T G+G  L +    +A    
Sbjct: 183 KAGEFYTPHEVSVLMSEII--ADHVKGKEKI----DIYDSTSGSGSLLLNIGKSIA---K 233

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------ 286
           H      +    QEL+  T+ +    +++R +   P   +++N   G TL  D       
Sbjct: 234 HMGNQGTIKYFAQELKENTYNLTRMNLVMRGIL--PTNIVTRN---GDTLEDDWPFFDDN 288

Query: 287 -----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFL 339
                +        +SNPP+ ++W+ D       HK+ +    RFG  L   S     FL
Sbjct: 289 DPVNSYEPLYLDAVVSNPPYSQQWDPD-------HKDSDPRYSRFG--LAPKSKADYAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  +   L P+G    AIVL    LF G     E EIR+ L+E++ ++ I+ LP ++FF
Sbjct: 340 LH--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGEIRKNLIEDNHLDTIIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L  ++   ++  V +++A+        EGK  ++   D ++ I D  + R
Sbjct: 393 GTGIPTIILVLKQKR---QKNDVLIVDAS---KGFAKEGKNNKLRACDIKK-ICDTVIKR 445

Query: 460 EN 461
           ++
Sbjct: 446 QS 447


>gi|315127914|ref|YP_004069917.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913]
 gi|315016428|gb|ADT69766.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913]
          Length = 559

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 51/300 (17%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +H       ++ ++YE+++ +F     +    F TP+ +V L   ++ +P    FK    
Sbjct: 189 VHASLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPKSIVSLMVQMM-EP----FKGR-- 241

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF   + + +       KI  + + +GQE    T  +    M IR +
Sbjct: 242 ----VYDPAMGSGGFFVQSEHFI--NAHKGKIGDVSI-YGQEYNHTTWQLASMNMAIRGI 294

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWE---KDKDAVEKEHKNGE 320
                 D +   +  +T + D     R  + ++NPPF  K+W+    D D          
Sbjct: 295 ------DFNFGKEPANTYTNDQHPDLRADFVMANPPFNMKEWDVGVSDDDP--------- 339

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R+  G P   + +  +L H+       PNG     ++L++  + +    + E  IR+ 
Sbjct: 340 --RWAYGTPPSGNANFAWLQHML--YHTAPNGS--VGLLLANGSMSSNT--NNEGAIRKA 391

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWIL----------SNRKTEERRGKVQLINATDL 430
           L+E DL+E +VALP  LF  T I   +W L          S R+  +RRGKV  I+A +L
Sbjct: 392 LIEQDLVECMVALPGQLFTNTQIPACIWFLTKNKNARVSASGRQLTDRRGKVLFIDARNL 451


>gi|167856382|ref|ZP_02479108.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis 29755]
 gi|167852488|gb|EDS23776.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis 29755]
          Length = 537

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 143/316 (45%), Gaps = 40/316 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            + + YE+LI +F S   + A +F TP+ V  + + ++ LD  +    +   +   L D 
Sbjct: 181 ALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKKKKLDSVL-DF 239

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +  + +A+ G H     I   +GQE    T+ +    ML+  +     +D 
Sbjct: 240 ACGSGSLLLNVRHQMAENGGH-----IGKIYGQEKNITTYNLARMNMLLHGV-----KDT 289

Query: 273 SKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G +L  D      +   ++  F   ++NPPF  +W+  +D       NG     
Sbjct: 290 EFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDPKEDLANDFRFNG----- 344

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR+ LL +
Sbjct: 345 -YGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRKKLLND 396

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+A++ LP +LF+ T I   + +L   K E+    +  INA D +     + K++  +
Sbjct: 397 GNIDAVIGLPANLFYSTGIPVCILVLKKCKKED---DILFINAADAF----EKSKRQNRL 449

Query: 445 NDDQRRQILDIYVSRE 460
            D+   +I++ Y  R+
Sbjct: 450 TDEHIAKIIEHYQYRK 465


>gi|302336438|ref|YP_003801645.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella
           uli DSM 7084]
 gi|301320278|gb|ADK68765.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella
           uli DSM 7084]
          Length = 494

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 125/270 (46%), Gaps = 35/270 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+++   +   GA  + TPR ++    + ++D      +  PG  +T+ DP 
Sbjct: 126 VKGDIYEGLLQKVAEDTKSGAGQYFTPRALI----SAMVD----CVQPQPG--KTVVDPC 175

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH--------GQELEPETHAVCVAGMLIRRLE 265
           CG+GGFL  A +++ D  S H        H        G E+ P T+ +C+  + +  + 
Sbjct: 176 CGSGGFLLAAKDYIED--SEHYTLDRDQRHFLRYSTFAGWEIVPSTYKLCLMNLFLHNIS 233

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGR 323
                +    I +  +L  D   G R+ Y L+NPPFGKK  +    D   +E + G   R
Sbjct: 234 D---FNGEPPIYRNDSLLAD--PGTRYDYVLTNPPFGKKSSYSFTNDEGLQEEEEGTYNR 288

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   S+  + F+ H+   L       G AA+V+  + LF G  G+GE+ +RR LLE
Sbjct: 289 -RDFWAVTSNKQLNFVQHIHTILR----QDGHAAVVVPDNVLFEG--GAGET-VRRKLLE 340

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR 413
              +  I+ LPT +F+   +   +    NR
Sbjct: 341 TTNLHTILRLPTGIFYAQGVKANVIFFDNR 370


>gi|126667032|ref|ZP_01738007.1| N-6 DNA methylase [Marinobacter sp. ELB17]
 gi|126628438|gb|EAZ99060.1| N-6 DNA methylase [Marinobacter sp. ELB17]
          Length = 498

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 121/268 (45%), Gaps = 31/268 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +   +   GA  + TPR ++      L        +  PG  +T+ DP 
Sbjct: 127 VKGDIYEGLLEKNAEDTKSGAGQYFTPRALIRAMVDCL--------RPEPG--KTIADPA 176

Query: 214 CGTGGFLTDAMNHVADCGSHH--KIPPILVPH----GQELEPETHAVCVAGMLIRRL-ES 266
           CGTGGF   A + + D  ++   K     + H    G E+   T  +C+  M +  + E 
Sbjct: 177 CGTGGFFLAAYDFLTDTQNYQLDKAQKSFIKHDTFFGNEIVANTRRMCLMNMFLHNIGEI 236

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D    +S N    +       + + F Y L+NPPFGKK        E E +  +L     
Sbjct: 237 DGDSLVSPNDALVAA------SPQSFDYVLANPPFGKKSSMSFTNEEGEQETDDLTYNRQ 290

Query: 327 GL-PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S+  + F+ H+ + L+      G+AA+V+  + LF G  G+GE+ IRR LL+N 
Sbjct: 291 DFWATTSNKQLNFVQHIRSMLKTT----GKAAVVVPDNVLFEG--GAGET-IRRKLLKNT 343

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNR 413
            +  I+ LPT +F+   +   +    N+
Sbjct: 344 DLHTILRLPTGIFYAHGVKANILFFDNQ 371


>gi|270719566|ref|ZP_06223326.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus
           influenzae HK1212]
 gi|270315414|gb|EFA27679.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus
           influenzae HK1212]
          Length = 219

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 28/210 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFG 63
           L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+       LAF 
Sbjct: 9   LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEELAF- 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFED 117
            + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I   
Sbjct: 68  -TELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIINC 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIR 164
           F     I  +    +L  + + F    I L P    D             M  ++E LIR
Sbjct: 127 FKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELIR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +F  E +E A +  TPR+V+ L T L+ DP
Sbjct: 187 KFNEENNEEAGEHFTPREVIELMTHLVFDP 216


>gi|148377828|ref|YP_001256704.1| modification (methylase) protein of type irestriction-modification
           system [Mycoplasma agalactiae PG2]
 gi|148291874|emb|CAL59265.1| Modification (Methylase) protein of type Irestriction modification
           system [Mycoplasma agalactiae PG2]
          Length = 892

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 178/397 (44%), Gaps = 57/397 (14%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFS 141
           S+    N +    ++  S +D  K++F+D    F   +++L     E+  ++  +    +
Sbjct: 120 SSFNIQNFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGADTNEQTKVISDLLDIIN 179

Query: 142 GIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            I   P T  D  V+  IYE+LI RF S   + A +F TP +V  L + ++     A   
Sbjct: 180 DI---PSTNQDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIV-----AYHL 231

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           +    I+ +YDPT G+G  L           S +   P+   + QEL+ E   +    ++
Sbjct: 232 KDREFIK-VYDPTSGSGSLLLTIGQEFKKYNSGN--SPV-SYYAQELKAEVFNLTRMNLI 287

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFH--------YCLSNPPFGKKWEKDKD 310
           ++ +   P    ++N   G TL +D  +F    +           +SNPP+ + W  +K 
Sbjct: 288 MKNIS--PTEIHARN---GDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKH 342

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            ++  +          G+   +     FL+H  +   + P+G    AIVL    LF G +
Sbjct: 343 TLDPRY-------IEYGIAPKTKADYAFLLH--DLYHVQPDG--IMAIVLPHGVLFRGNS 391

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              E +IR+ L++   I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L
Sbjct: 392 ---EGQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKL 445

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
           +     EGK  +  +    ++I D+  +R E   FSR
Sbjct: 446 YVK---EGKNNK-FSKSHIKKIADVVNNRIEIKNFSR 478


>gi|326314828|ref|YP_004232500.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371664|gb|ADX43933.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 483

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 155/358 (43%), Gaps = 48/358 (13%)

Query: 112 KAIFEDFDF-SSTIARLE-KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGS 168
           + +F D  F S+ +   E +  +L      F G+E  + D      ++   E LI    +
Sbjct: 98  QGVFHDVSFDSAALGNPEQRQRILSDWLDQFGGLEFDYRDENAAESVAFACETLISEVAA 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                  +F TP  V  L  A +L P+     ES G      DP CG+G  L  A +  A
Sbjct: 158 ASGRRGAEFFTPPQVSRL-IAQILQPEAG---ESVG------DPCCGSGTLLL-ACSAFA 206

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              S ++   +    GQE    T A+    ML+         +L+  ++ G TL      
Sbjct: 207 RARSGYEGCQLF---GQEKNGSTWALAKINMLVHG-------ELTAQLEWGDTLKDPRLV 256

Query: 289 G----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                + F   +SNPPF  K W ++  A      N   GR+  G+P        FL H+ 
Sbjct: 257 ADGRLREFDVVVSNPPFNVKDWGQEAAA------NDLYGRYRRGIPPRGTADYAFLSHMV 310

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+    G GR A+V+S   LF  R+G+ E +IRR LLE  L++A++ALPT L   T +
Sbjct: 311 ETLK---PGRGRMAVVVSHGVLF--RSGA-ELQIRRQLLEEGLVDAVIALPTKLLPNTPL 364

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              L +L   K++ R   V  I A+  +      GK +  + D+   QI   YV+R +
Sbjct: 365 PIALLVLRKDKSDRR---VLFIKASRQF----EHGKTQNRLRDEDLAQIEATYVARAD 415


>gi|108800737|ref|YP_640934.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119869876|ref|YP_939828.1| N-6 DNA methylase [Mycobacterium sp. KMS]
 gi|108771156|gb|ABG09878.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119695965|gb|ABL93038.1| N-6 DNA methylase [Mycobacterium sp. KMS]
          Length = 429

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 142/317 (44%), Gaps = 54/317 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE L+ +  S+   GA  + TPRD++     ++           P +  T+ DP CGT
Sbjct: 65  DAYEELLAKGASDKGSGAGQYFTPRDLIRAIVDVI----------DPSVADTVVDPACGT 114

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
           GGFL  A  HVA+     K+ P    H       G EL   T  +    +L+  + +   
Sbjct: 115 GGFLLVAHEHVAEEAG--KLTPTQRNHLRDKFVTGYELVDGTARLAAMNLLLHGIGT--- 169

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEHKNGE 320
            D    I+    L  D   G+R+   LSNPPFG+K           + +D VE E ++  
Sbjct: 170 ADGPSLIEVRDALIAD--PGQRWSVVLSNPPFGRKSSLTMVGADGREARDDVEIERQD-- 225

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  +   S+  + FL H+   L++     GRAA+VL  + LF G  G+GE+ +RR 
Sbjct: 226 ------FVVTTSNKQLNFLQHIMTILDI----NGRAAVVLPDNVLFEG--GAGET-LRRK 272

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL++  +  ++ LPT +F+   +   +     R+  E+    +L    DL T+     K+
Sbjct: 273 LLDDFDLHTMLRLPTGIFYAQGVKANVLFFDKRQANEQPWTSKLW-VYDLRTNQHFTLKQ 331

Query: 441 RRIINDDQRRQILDIYV 457
            R+     RR  LD +V
Sbjct: 332 NRL-----RRHHLDGFV 343


>gi|139438170|ref|ZP_01771723.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC
           25986]
 gi|133776367|gb|EBA40187.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC
           25986]
          Length = 853

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 204/490 (41%), Gaps = 72/490 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTL---LRRLECALEPTRSAVREKYLAFGGSNI 67
           LA+ IW++A  +    +  ++   IL F     L   E A    R    E   +    + 
Sbjct: 6   LASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVARLKARDFAEEDLPSLVEDDE 65

Query: 68  DLESFVK-VAGY--SFYNTSEYSLSTLGS---TNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +   FVK   GY  ++ N     +S  G    +N R+ L ++  +     K +F+   F 
Sbjct: 66  ETVEFVKGECGYFIAYENLFSTWVSKGGDFEISNVRDALNAFSRNIDPARKRVFDGI-FD 124

Query: 122 STIARLEKAGL----LYKICKNFSGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSE 172
           +    L K G       K  ++   I L  D   D      V+  IYE+LI  F +   +
Sbjct: 125 TLRTGLSKLGTDARSQSKAARDL--IYLIKDIPMDGRQDYDVLGFIYEYLISNFAANAGK 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + ++       +  +     T+YDPT G+G  L +    VA    
Sbjct: 183 KAGEFYTPHEVSMLMSEIVS------WHLAGRENITIYDPTSGSGSLLINIGKAVA---R 233

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKD----- 285
            +  P  +  + QEL+  T+ +    +++R +       L  NI  + G TL  D     
Sbjct: 234 RNGDPDSIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIVARNGDTLEDDWPWFD 286

Query: 286 LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
               K   Y        +SNPP+ + W+ +   ++         RF  G+   S     F
Sbjct: 287 TVENKDETYDPLFVDAVVSNPPYSQNWDPEDKELDP--------RFKFGVAPKSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H  +   L P+G     IVL    LF G     E  IR+ L+EN  I+AI+ LP ++F
Sbjct: 339 LLH--DLYHLRPDG--IMCIVLPHGVLFRG---GEEGTIRKNLVENRHIQAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L  RK  E    V +++A+  +     EGK  ++   D RR +  +   
Sbjct: 392 FGTGIPTIVMVL--RKQRE-SSDVLIVDASKHFV---KEGKNNKLRASDIRRIVDAVTTG 445

Query: 459 RENGKFSRML 468
               KFSR++
Sbjct: 446 ATVDKFSRLV 455


>gi|325832722|ref|ZP_08165485.1| type I restriction-modification system, M subunit [Eggerthella sp.
           HGA1]
 gi|325485861|gb|EGC88322.1| type I restriction-modification system, M subunit [Eggerthella sp.
           HGA1]
          Length = 524

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 45/381 (11%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
           GST  + +  ++   F+D      +D D   T+A  E+  L+ K+    S I+       
Sbjct: 128 GSTMGQASEAAFNGLFNDMK---LQDPDLGDTVA--ERTALISKVIVKISEIDFSLSDSQ 182

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLY 210
             V+   Y  LI  F S+  + + +F TP     L AT   +  D+A         +T+ 
Sbjct: 183 FDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA---------KTVG 233

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D TCG+   L +   H+      H        +GQE    T+ +    ML+  ++     
Sbjct: 234 DCTCGSASMLLEVQKHLTTGRVGHF-------YGQENNATTYNLARMNMLMHGVDYQ--- 283

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + +I +G TL +D +   +    + NPP+  K++ +   ++    +G        LP 
Sbjct: 284 --NFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDANPALLDDPRYSG-----AGKLPP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389
            S     F+ H+   ++   +  GR A++L    LF G A   E  IR++++++ + ++A
Sbjct: 337 KSHADYAFVEHMIYHMD---DDDGRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRLDA 390

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ L  +LF  T+I   L +L  ++     G V  I+A+  +      GK +  + D+  
Sbjct: 391 VIGLAPNLFHGTSIPVCLLVLKTKRNG-NSGNVLFIDASKEFKP----GKNQNTLEDEHI 445

Query: 450 RQILDIYVSREN-GKFSRMLD 469
           ++I+D YV RE+  KF+ + D
Sbjct: 446 QKIVDAYVKREDVDKFAHVAD 466


>gi|149199876|ref|ZP_01876905.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155]
 gi|149137047|gb|EDM25471.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155]
          Length = 502

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 158/365 (43%), Gaps = 59/365 (16%)

Query: 112 KAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRV-----MSNIYEHLIR 164
           + +F+D  F+S     EK     L  + + F+  EL  D  P RV     + N YE+LI 
Sbjct: 114 RGVFQDISFNSDKLGEEKQKNEHLKDLLEVFAEAEL--DLRPSRVGKLDIIGNAYEYLIA 171

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +     A  F TP +V  L  A +LDP +            + DP  G+G  +    
Sbjct: 172 KFAAGGGSTAGQFFTPPEVSDL-MAEILDPQEG---------DEMCDPCTGSGSLIMKCG 221

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-----RLE-SDPRRDLSKNIQQ 278
             V     +H         GQE    T A+    M +      R+E  D  R+      Q
Sbjct: 222 RKVQ---QNHNGSKNYALFGQESIGSTWALAKMNMFLHGEDNHRIEWGDTLRNPKLIDSQ 278

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G  L  D+ T        +NPPF   KW  D  + +K       GRF  G+P  + G   
Sbjct: 279 GQLLQYDIVT--------ANPPFSLDKWGHDGASDDK------FGRFRRGIPPKTKGDYA 324

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ H+   L+ P +G  R A+V+    LF G   S E +IR  L+E +L++ ++ LP +L
Sbjct: 325 FISHMIETLK-PQSG--RMAVVVPHGVLFRG---SSEGKIRTKLIEENLLDTVIGLPANL 378

Query: 398 FFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-----KRRIINDDQRRQ 451
           FF T I A  L+    +  +    KV  I+A+  + S +N+ K      ++II     R+
Sbjct: 379 FFGTGIPAAILYFKKKKDDK----KVLFIDASREFDSGKNQNKLSSENVKKIIKTFNDRE 434

Query: 452 ILDIY 456
            +D Y
Sbjct: 435 AIDKY 439


>gi|164688286|ref|ZP_02212314.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM
           16795]
 gi|164602699|gb|EDQ96164.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM
           16795]
          Length = 317

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 29/251 (11%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+GG    ++  V +   H      +  +GQE  P T  +    M IR +E++ 
Sbjct: 12  VYDPACGSGGMFVQSLKFVEE---HSGNAFDISVYGQESNPTTWKLAKMNMAIRGIENNL 68

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPG 327
               SKN     T  +DL    +  + L+NPPF +  W +     +         R+  G
Sbjct: 69  G---SKN---ADTFHEDLHKNLKADFILANPPFNQSDWGQPLLLDDP--------RWKWG 114

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +KL       G+A +VL++  L +    S E +IR+ +L NDL+
Sbjct: 115 TPPAGNANYGWIEHMLDKLSQK----GKAGVVLANGSLSSNT--SNEGKIRKTILNNDLV 168

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + IVALP  LF+ T I   +W  +  K  + +G+   I+A  +   +    ++ R ++D+
Sbjct: 169 DCIVALPDKLFYTTGIPVCIWFFNRDK--KHKGQTLFIDARKMGDMVN---RRLRELSDE 223

Query: 448 QRRQILDIYVS 458
             ++I D Y+S
Sbjct: 224 DIKKIADTYIS 234


>gi|254428124|ref|ZP_05041831.1| N-6 DNA Methylase family [Alcanivorax sp. DG881]
 gi|196194293|gb|EDX89252.1| N-6 DNA Methylase family [Alcanivorax sp. DG881]
          Length = 571

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           FSG +L+  +    ++ ++YE+ +  F     +    + TP+ +V L   +L        
Sbjct: 191 FSGEKLNLHS--KDILGHVYEYFLGEFALAEGKQGGQYYTPKSIVTLIVEML-------- 240

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAV 254
              P   R +YDP  G+GGF   +   + +  S            +  +GQE  P T  +
Sbjct: 241 --QPYSGR-VYDPAMGSGGFFVSSDKFIENHASEQHYDAAEQKKHISVYGQEANPTTWKL 297

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVE 313
               M IR +      D +   +  +T + D     R  + ++NPPF  K W  +  A +
Sbjct: 298 AAMNMAIRGI------DFNFGTKNANTFTNDQHPDLRADFVMANPPFNMKDWWSESLADD 351

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    R+  G P   + +  ++ H+ +   L P G    A++L++  +      + 
Sbjct: 352 --------ARWQYGTPPKGNANFGWMQHMLH--HLAPTGS--MALLLANGSM--SSKTNN 397

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQL 424
           E EIR+ L+E D +E +VALP  LF  T I   +W L+         N K  +RRG+   
Sbjct: 398 EGEIRKRLIEEDRVECMVALPGQLFTNTQIPACIWFLTKDKTNGMVRNEKKRDRRGEFLF 457

Query: 425 INATDL 430
           I+A +L
Sbjct: 458 IDARNL 463


>gi|153000502|ref|YP_001366183.1| N-6 DNA methylase [Shewanella baltica OS185]
 gi|151365120|gb|ABS08120.1| N-6 DNA methylase [Shewanella baltica OS185]
          Length = 500

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 139/318 (43%), Gaps = 50/318 (15%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +L++  A    N +       FS     ++   LL ++    + I+   D+    +  ++
Sbjct: 89  DLKNLTAPIDKNPRGYVVKAAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDL 147

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   S  + G  +F TPR +     A+            P +  ++ DP CGTGG
Sbjct: 148 YEQILKDLQSAGNAG--EFYTPRAITKFIVAVT----------DPKLGESIMDPACGTGG 195

Query: 219 FLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           FL  A +H     V     H  +   +  HG E +   H +C   M++  +E      + 
Sbjct: 196 FLACAFDHVKANYVKTADDHQTLQQQI--HGVEKKQLPHLLCTTNMMLHGIE------VP 247

Query: 274 KNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+ G+TL+K L +  +     ++NPPFG     ++D +EK           P   +  
Sbjct: 248 VQIKHGNTLNKPLSSWDEDIDVIITNPPFGG---TEEDGIEKNF---------PSEFQTR 295

Query: 333 DGSMLFLMHLANKLELPPNG-GGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAI 390
           + + LFL  +   L    NG GGRAA+VL    LF    G G +++I++ LLE   +  I
Sbjct: 296 ETADLFLQLIIEVLAPATNGKGGRAAVVLPDGTLF----GEGVKTKIKKMLLEECNLHTI 351

Query: 391 VALPTDLF-----FRTNI 403
           V LP  +F      +TNI
Sbjct: 352 VRLPNGVFNPYTGIKTNI 369


>gi|187779296|ref|ZP_02995769.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC
           15579]
 gi|187772921|gb|EDU36723.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC
           15579]
          Length = 529

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 157/367 (42%), Gaps = 59/367 (16%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F D +   +  RL     E+A  L  I K    IE   +   D ++  IYE+LI +F
Sbjct: 136 RGVFNDINLGDS--RLGSSTNERAKSLNNIVKLVDSIEYKGNDGKD-ILGEIYEYLIGQF 192

Query: 167 GSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   +   +F TP  V  +   ++   ++  D LF         +YDPT G+G  L   
Sbjct: 193 AASAGKKGGEFYTPHQVSKILAKVVTEAVEKSDELF--------NVYDPTMGSGSLLLT- 243

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  G        +   GQEL   T+ +    +++  +  +     +  +    TL 
Sbjct: 244 ------VGQELPKGTPMKYFGQELNTTTYNLARMNLMMHGISYN-----NMVLSNADTLE 292

Query: 284 KDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            D   G         + F   ++NPP+  KW+ D+  + K+ +  E G+  P     S  
Sbjct: 293 SDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSEYGKLAPA----SKA 347

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H    L    N  G  AIVL    LF G A   E +IR  L+  + ++ I+ LP
Sbjct: 348 DYAFILHSIYHL----NKTGTMAIVLPHGVLFRGAA---EGKIRETLIGKNYLDTIIGLP 400

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L  +K  E +  +  I+A++ +   +N+   R    D+   +I+ 
Sbjct: 401 ANLFYGTSIPTVILVL--KKNRENK-DILFIDASNDFEKNKNQNNLR----DEDIDKIIK 453

Query: 455 IYVSREN 461
            Y  R++
Sbjct: 454 TYKERKD 460


>gi|148825871|ref|YP_001290624.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE]
 gi|148716031|gb|ABQ98241.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE]
          Length = 443

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 95  ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 143

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 144 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 200

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 201 DSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 246

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  +L+E +VA
Sbjct: 247 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKGIINANLVECMVA 300

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           LP  LF  T I   +W L+  K  +R+G+V  I+A  +
Sbjct: 301 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQI 336


>gi|146294608|ref|YP_001185032.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566298|gb|ABP77233.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 549

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 167/338 (49%), Gaps = 60/338 (17%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPT 213
           + I+E+LI+ + S       ++ TP  V  +   +L+       K   G +R +  YDP+
Sbjct: 183 ATIFEYLIKDYNSNAGGKYAEYFTPHAVARIMAEILVP------KAQRGTVRNVSCYDPS 236

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRR 270
            G+G  L +  + + +  C            + Q++ +  ++ + +  +L   + S P  
Sbjct: 237 AGSGTLLMNVAHAIGENRCS----------IYTQDISQKSSNLLRLNLILNNLVHSIP-- 284

Query: 271 DLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               N+ QG+T+        +KD    KRF Y +SNPPF   +   +D ++ +  N    
Sbjct: 285 ----NVIQGNTIQHPYHVESTKDGKALKRFDYIVSNPPFKLDFSDYRDELDSKANNE--- 337

Query: 323 RFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-E 374
           RF  G+PK             LFL H+   L+  PNG  +AA+V+ +  +    A SG +
Sbjct: 338 RFFAGIPKAPPKDKDKMAIYSLFLQHIIASLK--PNG--KAAVVVPTGFI---TAQSGID 390

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTS 433
            +IR  L++N ++  +V++P+++F  T    + L+I +N K     GKV LI+A++L   
Sbjct: 391 KKIREHLVKNKMLAGVVSMPSNIFATTGTNVSILFIDANNK-----GKVVLIDASNLGEK 445

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
           I++   ++ +++ ++ ++I+D++  ++  + FS  +DY
Sbjct: 446 IKDGKNQKTVLSYEEEQRIIDVFNFKDAEEGFSVAVDY 483


>gi|332285463|ref|YP_004417374.1| Type I restriction-modification system, M subunit [Pusillimonas sp.
           T7-7]
 gi|330429416|gb|AEC20750.1| Type I restriction-modification system, M subunit [Pusillimonas sp.
           T7-7]
          Length = 520

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 38/299 (12%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           G L ++    S I    D    R ++  +YE+ + +F S   +    F TP  +V+   A
Sbjct: 140 GKLGELVDMISTIGFGGDANTARDILGQVYEYFLGQFASAEGKKGGQFYTPASIVNTLVA 199

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L  P              +YDP CG+GG    +   +   G +     I   +GQE  P
Sbjct: 200 VLA-PHKG----------QVYDPCCGSGGMFVQSEKFIEAHGGNIGDVSI---YGQESNP 245

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKD 308
            T  +    + IR +      D +   +   T +++     R  + L+NPPF    W   
Sbjct: 246 TTWRLAAMNLAIRGI------DFNLGKEPADTFTRNQHPDLRADFILANPPFNISDWWHG 299

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             ++E +       R+  G P   + +  +L H+ + L+  P G  RA IVL++  + + 
Sbjct: 300 --SLEGDP------RWQYGDPPKGNANYAWLQHMLHHLK--PTG--RAGIVLANGSMSSS 347

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           +  + E  IR  +++ D++E ++ALP  LFF T I   LW L+ +K  +R+G+V  I+A
Sbjct: 348 Q--NNEGVIRAAMVDADVVEVMIALPGQLFFNTQIPACLWFLAKQK--KRKGEVLFIDA 402


>gi|167771559|ref|ZP_02443612.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM
           17241]
 gi|167666199|gb|EDS10329.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM
           17241]
          Length = 495

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 134/306 (43%), Gaps = 41/306 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSG---IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F     ++  A +LY+I +       + +  D     V   IYE L+++   +V  GA  
Sbjct: 95  FKGATNKINNAAILYRIVQMIDKEKWVSMSTD-----VKGEIYEGLLQKNAEDVKSGAGQ 149

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-- 234
           + TPR ++      +           P  ++T+ DP CG+GGFL  A +++ D   ++  
Sbjct: 150 YFTPRPLIQAMVKCI----------RPEPMKTVADPCCGSGGFLLAAQSYLTDPQYYNLD 199

Query: 235 -KIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
            +    L      G E+ P T  + +  + +  +      DL   +    TL   L T  
Sbjct: 200 REAKEFLKKEAFRGWEIVPATFKMSLMNLYLHNI-----GDLYGQVP--ITLGDALLTDP 252

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-FLMHLANKLE 347
           G+RF Y L+NPPFGKK        E E +  +L          S    L FL H+   L+
Sbjct: 253 GERFDYVLTNPPFGKKSALTFTNEEGEQEGEDLVYNRQDFWTTSSNKQLNFLQHINTLLK 312

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AA+V+  + LF G  GSGE+ IR+ LLE   +  I+ LPT +F++  +   +
Sbjct: 313 ----ATGKAAVVVPDNVLFEG--GSGET-IRKKLLETCDLHTILRLPTGIFYKPGVKANV 365

Query: 408 WILSNR 413
                R
Sbjct: 366 IFFDKR 371


>gi|332297066|ref|YP_004438988.1| type I restriction-modification system, M subunit [Treponema
           brennaborense DSM 12168]
 gi|332180169|gb|AEE15857.1| type I restriction-modification system, M subunit [Treponema
           brennaborense DSM 12168]
          Length = 866

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 114/472 (24%), Positives = 201/472 (42%), Gaps = 72/472 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---ECALEPTRSAVREKYLAFGGSNI 67
           LA  IW++A ++    +  ++   IL F   + L   E                F  ++ 
Sbjct: 6   LATKIWESANEMRSKIEANEYKDYILGFIFYKYLSETELRFAKKNGCTDADIKKFSENDA 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +  +++K      +A  + ++T          +N R+ L ++    +   K +F+   F+
Sbjct: 66  ETATYIKSNIGYFIAYENLFSTWITKGKDFDVSNVRDALSAFSRLINPAHKKVFDGI-FN 124

Query: 122 STIARLEKAG--------LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +  + L K G         + K+    + I +      D V+  +YE+LI  F +   + 
Sbjct: 125 TLQSGLSKLGETAASQTSAISKLLALINDIPMDGKQDYD-VLGFVYEYLISMFAANAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP +V     +LL+    A   ++   I+ +YDPT G+G  L +    VA    H
Sbjct: 184 AGEFYTPHEV-----SLLMSEVIAFHLKNRKEIK-IYDPTSGSGSLLINIGRSVA---KH 234

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRR-------------LESD-PRRDLSKNIQQG 279
                 +  + QEL+  T+ +    +++R              LESD P  D +  +   
Sbjct: 235 IDNKNNIKYYAQELKQNTYNLTRMNLIMRNILPDNIVTRNADTLESDWPYFDENDPVHTY 294

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLF 338
             L  D          +SNPP+ +KW    D+  KE+      R+   GL   S     F
Sbjct: 295 DPLYVDA--------VVSNPPYSQKW----DSTNKEND----PRYSNYGLAPKSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H  +   + P+G     IVL    LF G     E EIR+ L+E D I+AI+ LP ++F
Sbjct: 339 LLH--DLYHVKPDG--IMTIVLPHGVLFRG---GEEGEIRKKLIEKDQIQAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           F T I T + +L  ++T+     V +++A+  +     EGK  ++ + D +R
Sbjct: 392 FGTGIPTVIIVLRQKRTD---SDVLIVDASKGYIK---EGKNNKLRSSDIKR 437


>gi|89073170|ref|ZP_01159709.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
 gi|89051123|gb|EAR56580.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
          Length = 529

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 164/370 (44%), Gaps = 48/370 (12%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           A  +D+   +F++ D +S   +L K       L+ K+ ++   I+ H +     ++ + Y
Sbjct: 127 ADSADDFDGLFDELDLTSN--KLGKTPDARNKLIAKVLEHLDNIDFHLENSEIDILGDAY 184

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F S   + A +F TP+ +  L   L+      L  E    I ++YDPTCG+G  
Sbjct: 185 EYLIGMFASGAGKKAGEFYTPQILSKLLAKLV-----TLGNED---IESVYDPTCGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +          +  +GQE  P T+ +    M++  L+ D       +I+  
Sbjct: 237 LLQAARESRNLD--------VKCYGQEQNPNTYNLARMNMIMHGLDYD-----GFDIKNA 283

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TL        RF   ++NPPF   W         + +  E G+  P     +     F+
Sbjct: 284 DTLHAPQHLNLRFDAIVANPPFSMHWSPTP-LYMSDPRFAESGKLAPK----TKADYAFI 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398
            H+  +L    +  G  A+V+    LF   A   E  IR++L+++ + ++ ++ LP+++ 
Sbjct: 339 QHMLYQL----SDTGTMAVVVPHGVLFRSLA---EGHIRKFLIKDKNYLDMVIGLPSNIV 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T +   + IL  +K+ +    V  I+A+  +     +GK    + ++  ++IL+    
Sbjct: 392 LGTGVP--VCILVFKKSRKVDDNVLFIDASQHF----EKGKNANYLREEDLQRILNAVSK 445

Query: 459 REN-GKFSRM 467
           REN  +FS +
Sbjct: 446 RENIDQFSHL 455


>gi|154490803|ref|ZP_02030744.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC
           43184]
 gi|154088551|gb|EDN87595.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC
           43184]
          Length = 862

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 177/389 (45%), Gaps = 60/389 (15%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG----LLYKICK 138
            SE+S++ L        L S+    S N + ++E+  F +  A L K G       +  K
Sbjct: 97  NSEFSVADLSGA-----LNSFDRLISPNYRHVYENV-FKTLQAGLSKLGENTTSQTRALK 150

Query: 139 NFSGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           N   I+L  D   D      V+  +YE+LI  F +   + A +F TP +V  L + ++  
Sbjct: 151 NL--IKLIKDIPTDGSQDYDVLGYVYEYLISNFAANAGKKAGEFYTPHEVAILMSEIV-- 206

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
              A   ++   I  +YDPT G+G  L      V   G H +    +  + QEL+  T+ 
Sbjct: 207 ---AEHHKNKDKIE-IYDPTSGSGSLLITIGKSV---GRHIEDKNKVKYYAQELKENTYN 259

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFT-----GKRFHY--CLSNPPFGKK 304
           +    +++R ++ D     + N +   +L +D  L T     GK  +    +SNPP+ ++
Sbjct: 260 LTRMNLVMRGIKPD-----NINTRCADSLEEDWPLQTDGGDIGKPLYVDAVVSNPPYSQQ 314

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W+ +   ++   K+        G+   S     FL+H  + L+  P+G     IVL    
Sbjct: 315 WDANDRELDARFKD-------YGVAPKSKADYAFLLHELHHLK--PDG--ILTIVLPHGV 363

Query: 365 LFNGRA---GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           LF G A     GE +IRR L+E + I+AI+ LP ++FF T I T + +L   +  +    
Sbjct: 364 LFRGDADENSEGEGKIRRNLIEKNNIDAIIGLPANIFFGTGIPTLIMVLKQHRDND---D 420

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRR 450
           V +I+A+  +     EGK  ++   D +R
Sbjct: 421 VLIIDASKGFVK---EGKNNKLRECDIKR 446


>gi|330992550|ref|ZP_08316498.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1]
 gi|329760749|gb|EGG77245.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1]
          Length = 149

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 8/97 (8%)

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
             G+ +PD++L + ENVP  E I  YF REV PH PDA+ID+      DK   ++GYEI 
Sbjct: 61  AKGKPVPDSSLRDTENVPLDEDIHTYFKREVLPHAPDAWIDE------DKT--KIGYEIP 112

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FNR+FY ++P R L++IDA+LK V A+I  +L E++ 
Sbjct: 113 FNRYFYVFEPPRPLEEIDADLKEVTAKIMAMLGELSA 149


>gi|310765245|gb|ADP10195.1| Type I restriction modification DNA modification domain protein
           [Erwinia sp. Ejp617]
          Length = 568

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 42/285 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 204 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYQGR-VYDPA 252

Query: 214 CGTGGFLTDA---MNHVADCGSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +   AD   ++       +V +GQE  P T  +    M IR +    
Sbjct: 253 MGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQESNPTTWRLAAMNMAIRGI---- 308

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D     +   TL  D     R  + ++NPPF  K+W   K  +E +       R+  G
Sbjct: 309 --DFEFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWNAK--LENDV------RWQYG 358

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G    A+ L  +        + E EIRR L+E DL+
Sbjct: 359 TPPQGNANFAWMQHMIH--HLAPKG----AMALLLANGSMSSNSNNEGEIRRKLVEADLV 412

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINA 427
           E +VALP  LF  T I   +W+L+  K+       R+G+V  I+A
Sbjct: 413 ECMVALPGQLFTNTQIPACIWLLTKDKSGGNGKAHRKGEVLFIDA 457


>gi|302346748|ref|YP_003815046.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302150375|gb|ADK96636.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 558

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 152/341 (44%), Gaps = 54/341 (15%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  LL +I + F  I   P+ +   +   IYE+ +  F     +G   F TP  VV   
Sbjct: 135 EEPELLSRIVRVFKDI---PENISIDIFGQIYEYFLGNFALAEGQGGGAFYTPASVVQYM 191

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L        + + G  + L DP CG+GG    A  ++    + ++       +G E 
Sbjct: 192 VEVL--------QPATGDKKFL-DPACGSGGMFVQAARYMHRHNTSNEQMMNFRCYGVEK 242

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWE 306
           EP+T  +    +L+  +  +        I + ++   D +    +F Y ++NPPF     
Sbjct: 243 EPDTVKLAKMNLLLNNVRGE--------IMEANSFYSDPYNAVGQFDYVMANPPFNV--- 291

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---------------ISDGSMLFLMHLANKLELPPN 351
            D+  VE+   +     +G  +P+               + + + L++ + A  L    N
Sbjct: 292 -DEVVVERVTDDARFNTYG--VPRNKTKSAKKASDKKETVPNANYLWIGYFATAL----N 344

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA+V+++S      AG  E EIR+ ++E+ +I  +V LP+++F    +   LW  +
Sbjct: 345 EQGKAALVMANSA---SDAGGSELEIRKKMIEDGIISQMVTLPSNMFSTVTLPATLWFFN 401

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            ++   ++ ++  I+A +++T +    +  R  +D+Q + +
Sbjct: 402 KKRP--KKDEILFIDARNIFTQV---DRAHRKFSDEQVKNL 437


>gi|251788561|ref|YP_003003282.1| type I restriction-modification system, M subunit [Dickeya zeae
           Ech1591]
 gi|247537182|gb|ACT05803.1| type I restriction-modification system, M subunit [Dickeya zeae
           Ech1591]
          Length = 535

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 125/507 (24%), Positives = 211/507 (41%), Gaps = 91/507 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----------ECALEP 50
           MTEF      L   +W  A+ L G     DF   +L F  LR L          E  ++ 
Sbjct: 1   MTEF--EKQKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58

Query: 51  TRSAVREKY----LAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLGST------N 95
            +    E+     L +  +  D+  F K+     +   E      S++ +  T      N
Sbjct: 59  PKQKEGERQPPLTLWYEQNEQDVPEFEKLMRRKVHYVIEPQYLWTSIAEMARTQHVKLLN 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LH 146
           T      YI   SF+   + +F + + +S     EK G  Y     ++CK    I   L 
Sbjct: 119 TLQAGFKYIEEESFASVFRGLFSEINLAS-----EKLGKTYGERNDRLCKIIKEIADGLK 173

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM 205
             +     + + YE+LI +F +   + A +F TP+ +  + +A++ LD  +    +    
Sbjct: 174 QFSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQR-SH 232

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           + +++D  CG+G  L +    +      H I  I   +GQE    T+ +    ML+  + 
Sbjct: 233 LDSVFDFACGSGSLLLNIRKRMG----QHGIGKI---YGQEKNITTYNLARMNMLLHGV- 284

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDK----DAVE 313
               +D   +I  G TL  D    +        +F   ++NPPF  +WE  +    D   
Sbjct: 285 ----KDSEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPTETLADDVRF 340

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           K H          GL   S     FL+H  + L+      G  AI+L    LF  R+G+ 
Sbjct: 341 KNH----------GLAPKSAADFAFLLHGFHFLK----EDGVMAIILPHGVLF--RSGA- 383

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E+ IR  LL++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +  
Sbjct: 384 EARIRTKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF-- 438

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRE 460
             ++GK++  I+ D  ++I+D Y  R+
Sbjct: 439 --DKGKRQNQISSDHIKEIIDTYKFRK 463


>gi|316932986|ref|YP_004107968.1| adenine-specific DNA-methyltransferase [Rhodopseudomonas palustris
           DX-1]
 gi|315600700|gb|ADU43235.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris DX-1]
          Length = 484

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 42/310 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +P  V  +IYE L+ R   +V  GA  + TPR V+  A   L+DP            +T
Sbjct: 119 ALPVDVKGSIYEGLLARNAEDVKSGAGQYFTPRPVIE-AMVTLVDPKPH---------QT 168

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLI 261
           ++DP CGT GFL  A  H+     H K     V         G ++ PE   +    + +
Sbjct: 169 VHDPACGTAGFLLAAWEHMK---KHPKARDRRVYSELKNKFSGVDIVPEVVRLAAMNLYL 225

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE----KDKDAVEKEHK 317
             +        +K+   G+        GK F   L+NPPFGKK      +D   ++ E +
Sbjct: 226 HGITGVDSIVEAKDALLGAG-------GKSFDVVLTNPPFGKKQSYRIVRDDGEIDSERE 278

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           + +   F       S+  + FL H+     L PN  G AA+VL  + LF G  G+GE+ I
Sbjct: 279 DYDRQDF---FVTTSNKQLNFLQHIMTV--LAPN--GEAAVVLPDNVLFEG--GAGET-I 328

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           RR LL+N     ++ LPT +F++  +   +     +   E     +L    DL T+ R  
Sbjct: 329 RRRLLQNFDFHTLLRLPTGIFYKQGVKANVLFFDKKPPSETASTKELW-IYDLRTNQRFT 387

Query: 438 GKKRRIINDD 447
            K+R ++  D
Sbjct: 388 LKERPMVRAD 397


>gi|210630770|ref|ZP_03296594.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279]
 gi|210160366|gb|EEA91337.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279]
          Length = 919

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 203/490 (41%), Gaps = 72/490 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---ECALEPTRSAVREKYLAFGGSNI 67
           LA+ IW++A  +    +  ++   IL F   + L   E A    R    E   +    + 
Sbjct: 6   LASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVARLKARDFAEEDLPSLVEDDE 65

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +   FVK      +A  + ++T          +N R+ L ++  +     K +F+   F 
Sbjct: 66  ETVEFVKGECGYFIAYDNLFSTWVAKGGDFEISNVRDALSAFSRNIDPARKRVFDGI-FD 124

Query: 122 STIARLEKAGL----LYKICKNFSGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSE 172
           +    L K G       K  ++   I L  D   D      V+  IYE+LI  F +   +
Sbjct: 125 TLQTGLSKLGTDARSQSKAARDL--IYLIKDIPMDGRQDYDVLGFIYEYLISNFAANAGK 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + ++       +  +     T+YDPT G+G  L +    VA    
Sbjct: 183 KAGEFYTPHEVSMLMSEIVS------WHLAGRENITIYDPTSGSGSLLINIGKAVA---R 233

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKD----- 285
            +  P  +  + QEL+  T+ +    +++R +       L  NI  + G TL  D     
Sbjct: 234 RNGDPDSIKYYAQELKENTYNLTRMNLVMRGI-------LPDNIVARNGDTLEDDWPWFD 286

Query: 286 LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
               K   Y        +SNPP+ + W+ +   ++         RF  G+   S     F
Sbjct: 287 TVENKDETYDPLFVDAVVSNPPYSQNWDPEDKELDP--------RFKFGVAPKSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H  +   L P+G     IVL    LF G     E  IR+ L+EN  I+AI+ LP ++F
Sbjct: 339 LLH--DLYHLRPDG--IMCIVLPHGVLFRG---GEEGAIRKNLVENRHIQAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L  RK  E    V +++A+  +     EGK  ++   D RR +  +   
Sbjct: 392 FGTGIPTIVMVL--RKQRE-SSDVLVVDASKHFV---KEGKNNKLRASDIRRIVDAVTAG 445

Query: 459 RENGKFSRML 468
               KFSR++
Sbjct: 446 ATVDKFSRLV 455


>gi|313639655|gb|EFS04450.1| type I restriction-modification system, M subunit [Listeria
           seeligeri FSL S4-171]
          Length = 503

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 158/386 (40%), Gaps = 65/386 (16%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGL---LYKICKNFSG-IELHPD 148
           ++ NN E  IA   D+     +DF   FSS+   L    L   L +  KN    IEL  D
Sbjct: 114 DSLNNFERTIAVSGDS-----DDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQD 168

Query: 149 T-----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F  E  + A +F TPR V  +          A      
Sbjct: 169 LNMVALQKSDVLGDAYEYLIGQFAMESGKKAGEFYTPRQVSEVM---------AQIAAKT 219

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I ++YDPT G+G  L     H+ +     ++   L  +GQE    T+ +    +L+  
Sbjct: 220 SNITSIYDPTVGSGSLLLTVKKHLKE-----EVQKDLNYYGQEKNTATYNLTRMNLLLHG 274

Query: 264 LESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFG-KKWEKDKDAVEKE 315
           +     R    +++ G TLS+D          G  F   + NPP+    W K    V   
Sbjct: 275 V-----RPEKMSVKNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDP 329

Query: 316 HKNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                  RF     LP  S G   FL+H    L       G  AIVL    LF G     
Sbjct: 330 -------RFELAGVLPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRG---GT 375

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E EIR+ LL  + I+ I+ LP +LF  T I   + IL   +T      V +I+A+  +  
Sbjct: 376 EGEIRKRLLNKNYIDTIIGLPGNLFTNTGIPVCVLILKKNRT--ISDPVLVIDASRNFIK 433

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSR 459
           +     K+ ++ +    +I+D YV R
Sbjct: 434 V----GKQNVLQEKDIARIVDTYVER 455


>gi|145223000|ref|YP_001133678.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145215486|gb|ABP44890.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 494

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 48/278 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE L+ +  S+   GA  + TPRD++     ++          +P +  T+ DP CGT
Sbjct: 130 DAYEELLAKGASDKGSGAGQYFTPRDLIRAIVDVI----------NPSVSDTIVDPACGT 179

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
           GGFL  A  HVA+     K+ P    H       G EL   T  +    +L+  + +   
Sbjct: 180 GGFLLVAHEHVAEGAG--KLTPTQRSHLRDKFVTGYELVDGTARLAAMNLLLHGIGTADG 237

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEHKNGE 320
             L   I+    L  D   G+R+   LSNPPFG+K           + +D VE E ++  
Sbjct: 238 ESL---IEVRDALISD--PGQRWSVVLSNPPFGRKSSLTMVGADGREARDDVEIERQD-- 290

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  +   S+  + FL H+   L++     GRAA+VL  + LF G  G+GE+ +RR 
Sbjct: 291 ------FVVTTSNKQLNFLQHIMTILDI----NGRAAVVLPDNVLFEG--GAGET-LRRK 337

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           LL++  +  ++ LPT +F+   +   +     +   E+
Sbjct: 338 LLDDFDLHTMLRLPTGIFYAQGVKANVLFFDRKPAAEQ 375


>gi|124002924|ref|ZP_01687775.1| type I restriction-modification system, M subunit [Microscilla
           marina ATCC 23134]
 gi|123991574|gb|EAY30982.1| type I restriction-modification system, M subunit [Microscilla
           marina ATCC 23134]
          Length = 538

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 44/318 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            + + YE+LI +F +   + A +F TP+ +  + + ++ LD  +    +   +   L D 
Sbjct: 183 ALGDAYEYLIGQFAAGSGKKAGEFYTPQQISGILSEIVTLDCQNPAAGKKKKLEHVL-DF 241

Query: 213 TCGTGGFLTDAMNHVADCG-SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            CG+G  L +    +   G S  KI      +GQE    T+ +    ML+  +     +D
Sbjct: 242 ACGSGSLLLNVRKRMVQAGGSTGKI------YGQEKNVTTYNLARMNMLLHGM-----KD 290

Query: 272 LSKNIQQGSTLSK------DLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              +I  G TL        ++   K+  F   ++NPPF  +W+   D  E         R
Sbjct: 291 TEFDIFHGDTLLNQWGVLNEMNPAKKPKFDAIVANPPFSLRWDSSSDLAED-------FR 343

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F G GL   S     FL+H  + L    +  G   I+L    LF G A   E  IR  LL
Sbjct: 344 FRGYGLAPKSAADFAFLLHGFHYL----SDNGTMTIILPHGVLFRGGA---EERIRTKLL 396

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +++ I+ ++ LP++LF+ T I   + +L   K   R   V  INA++ +    ++GK++ 
Sbjct: 397 KDNHIDTVIGLPSNLFYSTGIPVCILVL---KKCTRANDVLFINASEHF----DKGKRQN 449

Query: 443 IINDDQRRQILDIYVSRE 460
            +N+D   +I+D Y  R+
Sbjct: 450 ALNEDHIAKIIDTYQHRK 467


>gi|254436009|ref|ZP_05049516.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
 gi|207089120|gb|EDZ66392.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
          Length = 541

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 205/504 (40%), Gaps = 86/504 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------R 56
           + L   +W  A+DL G     DF   +L F  LR L    E                  R
Sbjct: 14  SQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDYPKLADDDR 73

Query: 57  EKYLA--FGGSNIDLESFVKVAGYSFYNT--SEY---SLSTLGSTNTRNNLESYIASF-- 107
              LA  +  +  D+ +F K      +     +Y   S++ L  T     L++    F  
Sbjct: 74  RAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQTLAGGFKH 133

Query: 108 --SDNAKAIFEDFDFSSTIARLEKAG------------LLYKICKNFSGIELHPDTVPDR 153
             +++  + F+   FS    R EK G            ++ KI K  +      D     
Sbjct: 134 IENESFASTFQGL-FSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTGSD----- 187

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           ++ + YE+LI +F +   + A +F TP+ V  + + ++ LD  +    +   + R L D 
Sbjct: 188 ILGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVL-DF 246

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +  N +   G       I + +GQE    T+ +    ML+  +     +D 
Sbjct: 247 ACGSGSLLLNVRNQMGPRG-------IGMIYGQEKNITTYNLARMNMLLHGM-----KDT 294

Query: 273 SKNIQQGSTLSKDLFT------GKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G TL  D          K+      ++NPPF  +WE D+         GE  RF
Sbjct: 295 EFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDFRF 347

Query: 325 -GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L    +  G  AIVL    LF G A   E+ IR  LL+
Sbjct: 348 ESHGLAPKSAADFAFLLHGLHFL----SDEGTMAIVLPHGVLFRGGA---EARIRTKLLK 400

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ ++ LP++LFF T I   + +L   K  +    V  INA++ +     +GK++  
Sbjct: 401 DGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKPD---DVLFINASEHF----EKGKRQNA 453

Query: 444 INDDQRRQILDIYVSR-ENGKFSR 466
           +      +I+D Y  R E  +++R
Sbjct: 454 LRPVDIDKIVDTYQYRKEEERYAR 477


>gi|198284106|ref|YP_002220427.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665706|ref|YP_002426761.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248627|gb|ACH84220.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517919|gb|ACK78505.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 537

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 207/506 (40%), Gaps = 84/506 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGG---- 64
            L N +W  A+ L G     DF   +L F  LR L    E   +  +   Y   GG    
Sbjct: 8   QLGNTLWSIADQLRGAMDADDFRDYMLSFLFLRYLSDNYETAAKKELGRDYPDVGGDARK 67

Query: 65  --------SNID-LESFVKVAGYSFYNTSE-----YSLSTLGSTNTRNNLESYIA----- 105
                   +N+D + +F K      +   +      S++ L  T   + L++  A     
Sbjct: 68  VPLALWYANNVDDIPAFEKQMRRKVHYVIQPAHLWNSIANLARTQNPDLLDTLQAGFKYI 127

Query: 106 ---SFSDNAKAIFEDFDFSSTIARLEKA---------GLLYKICKNFSGIELHPDTVPDR 153
              SF    + +F + D SS   +L K+          ++ KI +  +    + D + D 
Sbjct: 128 ETESFESTFQGLFSEIDLSS--PKLGKSYSDRNAKLCTIIQKIAEGLAAFSTNIDALGD- 184

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
                YE+LI +F +   + A +F TP+ +  + +A++          +   + ++ D  
Sbjct: 185 ----AYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLDSVLDFA 240

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L +    V   G       I   +GQE    T+ +    ML+  +     +D  
Sbjct: 241 CGSGSLLLNVRKKVNQAGG-----SIGKIYGQEKNITTYNLARMNMLLHGV-----KDTE 290

Query: 274 KNIQQGSTLSK--DLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF- 324
             I  G TL    D+   +       F   ++NPPF  +WE   DA+  +       RF 
Sbjct: 291 FEIFHGDTLLNEWDMLREQNPARKPSFDAVVANPPFSYRWEP-TDALADD------VRFK 343

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR  LL++
Sbjct: 344 SHGLAPKSAADFAFLLHGFHYLK----DEGVMAIILPHGVLFRGGA---EERIRTKLLKD 396

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ ++ LP +LF+ T I   + +L   K  +    V  INA + +     +GK++  +
Sbjct: 397 GHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHFV----KGKRQNHL 449

Query: 445 NDDQRRQILDIYVSR-ENGKFSRMLD 469
           +D+   +I++ Y  R E  +++R +D
Sbjct: 450 SDEHIAKIIETYQFRTEEPRYARRVD 475


>gi|124010329|ref|ZP_01694979.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC
           23134]
 gi|123983603|gb|EAY24056.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC
           23134]
          Length = 496

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 35/265 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE L+ +  S+V  GA  + TPR ++    A +           P   +T+ DP+CGTG
Sbjct: 136 IYEGLLEKNASDVKSGAGQYFTPRALIQAMVACV----------QPQPNKTIVDPSCGTG 185

Query: 218 GFLTDAMNHVADCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRL-ESDPRRDL 272
           GF   A +++ D     +     +     +G E+   T  +C+  M +  + E D    +
Sbjct: 186 GFFLAAYDYIVDNHELDRDEKKFLKKETFYGNEIVASTRRMCLMNMFLHNIGEIDGASLI 245

Query: 273 SKN---IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL- 328
           S     I QGS         +R  Y L+NPPFGKK        + E +  +L        
Sbjct: 246 SSADALIAQGS---------QRHDYVLANPPFGKKSSMTITNEDGEQERQDLSYNRQDFW 296

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S+  +  L H+ + L++     G AA+VL  + LF G  G+GE+ +R+ LL+   + 
Sbjct: 297 ATTSNKQLNVLQHIKSLLKV----NGEAAVVLPDNVLFEG--GAGET-VRKELLKTTELH 349

Query: 389 AIVALPTDLFFRTNIATYLWILSNR 413
            I+ LPT +F+   +   +    N+
Sbjct: 350 TILRLPTGIFYANGVKANVLFFDNK 374


>gi|77163968|ref|YP_342493.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|76882282|gb|ABA56963.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
          Length = 534

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 209/504 (41%), Gaps = 86/504 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECA----LEPTRSAV----R 56
           + L   +W  A+DL G     DF   +L F  LR L    E A    L P    +    R
Sbjct: 7   SQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDYPKLADDDR 66

Query: 57  EKYLA--FGGSNIDLESFVKVAGYSFYNT--SEY---SLSTLGSTNTRNNLESYIASF-- 107
              LA  +  +  D+ +F K      +     +Y   S++ L  T     L++    F  
Sbjct: 67  RAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQTLAGGFKH 126

Query: 108 --SDNAKAIFEDFDFSSTIARLEKAG------------LLYKICKNFSGIELHPDTVPDR 153
             +++  + F+   FS    R EK G            ++ KI K  +      D     
Sbjct: 127 IENESFASTFQGL-FSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTGSD----- 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           ++ + YE+LI +F +   + A +F TP+ V  + + ++ LD  +    +   + R L D 
Sbjct: 181 ILGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVL-DF 239

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +  N +   G       I + +GQE    T+ +    ML+  +     +D 
Sbjct: 240 ACGSGSLLLNVRNQMGPRG-------IGMIYGQEKNITTYNLARMNMLLHGM-----KDT 287

Query: 273 SKNIQQGSTLSKDLFT------GKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G TL  D          K+      ++NPPF  +WE D+         GE  RF
Sbjct: 288 EFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDFRF 340

Query: 325 -GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L    +  G  AIVL    LF G A   E+ IR  LL+
Sbjct: 341 ESHGLAPKSAADFAFLLHGLHFL----SDEGTMAIVLPHGVLFRGGA---EARIRTKLLK 393

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ ++ LP++LFF T I   + +L   K  +    V  INA++ +     +GK++  
Sbjct: 394 DGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKPD---DVLFINASEHF----EKGKRQNA 446

Query: 444 INDDQRRQILDIYVSR-ENGKFSR 466
           +      +I+D Y  R E  +++R
Sbjct: 447 LRPVDIDKIVDTYQYRKEEERYAR 470


>gi|284048513|ref|YP_003398852.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
 gi|283952734|gb|ADB47537.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
          Length = 857

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 52/322 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI +F +   + A +F TP +V  L + ++     A + +    I ++YDPT
Sbjct: 165 VLGFIYEYLISQFAANAGKKAGEFYTPHEVSQLMSEII-----AHYLQGREEI-SIYDPT 218

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L + + H A    + K    +  + QEL+  T+ +    +++R +   P   ++
Sbjct: 219 SGSGSLLIN-IGHAA--AKYMKDANKIRYYAQELKQNTYNLTRMNLVMRGIL--PANIIA 273

Query: 274 KNIQQGSTLSKD-----------LFTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNG 319
           +N   G TL +D            +        +SNPP+ ++W+   KD D         
Sbjct: 274 RN---GDTLEEDWPYFDDSDPTGTYNPLYVDAVVSNPPYSQQWDPSGKDNDP-------- 322

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              RFG  L   S     FL+H  +   L P+G     IVL    LF G     E  IR+
Sbjct: 323 RYSRFG--LAPKSKADYAFLLH--DLYHLKPDG--IMNIVLPHGVLFRG---GEEGTIRK 373

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+E + I+AI+ LP ++FF T I T + +L  ++       V +++A+  +     EGK
Sbjct: 374 NLVEYNHIDAIIGLPANIFFGTGIPTIIMVLRQKR---ENTDVLIVDASKGFVK---EGK 427

Query: 440 KRRIINDDQRRQILDIYVSREN 461
             ++   D RR I+D  +SR +
Sbjct: 428 NNKLRASDIRR-IVDTVISRRD 448


>gi|120436929|ref|YP_862615.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117579079|emb|CAL67548.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 526

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 30/284 (10%)

Query: 154 VMSNIYEHLIRRF---GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           V   IYE  + +F   G+   EG E F TP  +V+L    +  PD  +          ++
Sbjct: 155 VFGRIYEFFLMKFSMQGAGAQEGGE-FFTPPSLVNLIVNFI-QPDHGI----------IH 202

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+GG    + + + D  + +    I V +G E +     +    + I  +E     
Sbjct: 203 DPACGSGGMFVQSAHFIQDHENRNVNEAITV-YGTEYKSNNTKLAKMNLAIHGIEG---- 257

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
              K I + S  S       +  + ++NPPF       K+    E K    G    G   
Sbjct: 258 ---KIINENSYYSDPHHLVGKCDFVMANPPFNMDKIDAKNKFLAEDKRLPFGPPLTGKGT 314

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           IS+G+ L++ +  + L    N  G+A  V++SS      AG  E  IR  L+E   ++ I
Sbjct: 315 ISNGNYLWIQYFHSYL----NKNGKAGFVMASSAT---DAGHAEKRIREQLVETGDVDCI 367

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           VA+  + F+  ++  +LW     K +E R K+ +I+A +++  +
Sbjct: 368 VAVGNNFFYTRSLPCHLWFFDKGKKKENRDKILMIDARNVYRKV 411


>gi|260582497|ref|ZP_05850288.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094477|gb|EEW78374.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 579

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 37/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ +  F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 231 ILGHVYEYFLGHFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSGR-VYDPA 279

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D  +  +
Sbjct: 280 MGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA 336

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   + K      +  + ++NP F  K W  +  A +         R+  G P   
Sbjct: 337 DSFTQPQHIDK------KMDFIMANPHFNDKDWWNESLADDP--------RWAYGTPPKG 382

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+E +VA
Sbjct: 383 NANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVA 436

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           LP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 437 LPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 469


>gi|86146744|ref|ZP_01065064.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
 gi|85835394|gb|EAQ53532.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
          Length = 340

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 28/212 (13%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+GG    ++  + +   H      +  +GQEL   T+ +    + IR      
Sbjct: 9   IYDPACGSGGMFVQSLKFIKE---HEGRTKDIAIYGQELTSTTYKLAKMNLAIR------ 59

Query: 269 RRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF- 324
              LS N+ +    T   D     +  Y ++NPPF  K W  + +  +         RF 
Sbjct: 60  --GLSGNLGERAADTFFADQHKDLKADYIMANPPFNLKGWRNEAELTDD-------ARFA 110

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           G   P   + +  +++H+ +KL       G A  VL++  +    + SGE EIR+ L+EN
Sbjct: 111 GYRTPPTGNANYGWILHMLSKLSET----GTAGFVLANGSM--SSSTSGEGEIRQQLIEN 164

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           D +E ++ALP  LFF T I   +W ++  KTE
Sbjct: 165 DRVECMIALPGQLFFTTQIPVCIWFITKDKTE 196


>gi|308272900|emb|CBX29504.1| Putative type I restriction enzyme HindVIIP M protein [uncultured
           Desulfobacterium sp.]
          Length = 516

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 129/285 (45%), Gaps = 44/285 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +++E+ +  F     +    F TPR VV L   +L           P   R ++DP 
Sbjct: 160 ILGHVFEYFLGEFALAEGKKGGQFYTPRSVVELLVKML----------EPYKGR-VFDPC 208

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   VAD     K+  I + +GQE    T  +    + IR ++S       
Sbjct: 209 CGSGGMFVQSEKFVAD--HQGKVSDISI-YGQESNHTTWRLARMNLAIRGIDSSQ----V 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLP 329
           K   +GS L+ D     +  Y ++NPPF      D D       +GE+    GR+  G+P
Sbjct: 262 KWNNEGSFLN-DSHKDLKADYVIANPPF-----NDSDW------SGEILKKDGRWKYGIP 309

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              + +  ++ H      L P+G  +A  VL+   L +    SGE +IR+ L+E+ +++ 
Sbjct: 310 PSGNANYAWIQHFL--YHLSPSG--QAGFVLAKGSLTS--KTSGEGDIRKALIEDRMVDC 363

Query: 390 IVALPTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDL 430
           IV LP  LF  T I   LW LS    N K   R  ++  I+A ++
Sbjct: 364 IVNLPAKLFLNTQIPASLWFLSRNRANGKFRNRTNEIFFIDARNM 408


>gi|213971212|ref|ZP_03399330.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv.
           tomato T1]
 gi|301382340|ref|ZP_07230758.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062746|ref|ZP_07254287.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|213924081|gb|EEB57658.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv.
           tomato T1]
          Length = 540

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 164/373 (43%), Gaps = 58/373 (15%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRV--MSNI 158
           SF    + +F + +  S     EK G  Y     K+C     I    +     +  + + 
Sbjct: 136 SFESTFQGLFSEINLGS-----EKLGRTYVDRNAKLCTIIQKIAEGLNEFSSDIDSLGDA 190

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM-IRTLYDPTCGT 216
           YE+LI +F +   + A +F TP+ +  + +A++ LD  +   K  P   + ++ D  CG+
Sbjct: 191 YEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSHEP--KTGPKRRLESVLDFACGS 248

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +    V      H I  I   +GQE    T+ +    ML+  +     +D    I
Sbjct: 249 GSLLLNVRKRVGP----HGIGKI---YGQEKNITTYNLARMNMLLHGV-----KDTEFEI 296

Query: 277 QQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG 327
             G TLS D      L   K+  F   ++NPPF  +W+  +   E         RF   G
Sbjct: 297 YHGDTLSNDWDVLRQLNPAKKPTFDAIVANPPFSYRWDPTEAMAEDV-------RFKNHG 349

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L+      G  AI+L    LF  R+G+ E  IR  LL++  I
Sbjct: 350 LAPKSAADFAFLLHGFHFLK----DDGVMAIILPHGVLF--RSGA-EERIRTKLLKDGHI 402

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP++LF+ T I   + IL   K  +    V  INA D +T    +GK++  + D+
Sbjct: 403 DTVIGLPSNLFYSTGIPVCILILKKCKQTD---DVLFINAADHFT----KGKRQNQLTDE 455

Query: 448 QRRQILDIYVSRE 460
              +I+  Y +RE
Sbjct: 456 HIAKIIKAYQTRE 468


>gi|332535332|ref|ZP_08411131.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035245|gb|EGI71752.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
          Length = 544

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 164/378 (43%), Gaps = 47/378 (12%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLI 163
           SF+ N K +F + + +S       A    K+C     I   +   +    ++ + YE LI
Sbjct: 131 SFNSNFKGLFSEINLNSERLGKTPADRNKKLCSIIQKISEGIAEFSADSDILGDAYEFLI 190

Query: 164 RRFGSEVSEGAEDFMTPRDV-VHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLT 221
            +F +   + A +F TP+ +   L+  ++LD  +   K  P   +  + D  CG+G  L 
Sbjct: 191 SKFAAGSGQKAGEFYTPQPISTILSEIVILDSQEP--KTGPKKKLNKVLDFACGSGSLLL 248

Query: 222 DAMNHVADCG-SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +   H+ D G S  KI      +GQE    T  +    ML+  +     +D   +I  G 
Sbjct: 249 NVRKHIVDAGGSVGKI------YGQEKNVTTFNLARMNMLLHGI-----KDTEFDIHHGD 297

Query: 281 TLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKI 331
           TL  D      +   K+  F   ++NPPF  +W+  +         GE  RF   GL   
Sbjct: 298 TLLNDWDMLSEMNPAKKLKFDAIVANPPFSYRWDPSE-------AQGEDFRFKSHGLAPK 350

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H  + L    +  G  AI+L    LF G A   E  IR  LL +  I+ ++
Sbjct: 351 SAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGA---EQRIRTKLLNDGHIDTVI 403

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR-- 449
            LP +LFF T I   + +L   K  ++   V  INA++ +   + +   R    D+    
Sbjct: 404 GLPANLFFSTGIPVCIIVL---KKCKKYDDVLFINASEHYEKGKRQNTLREGKGDEPNDI 460

Query: 450 RQILDIYVSR-ENGKFSR 466
           ++I++ Y  R E  ++SR
Sbjct: 461 KKIVETYQYRSEEERYSR 478


>gi|182412907|ref|YP_001817973.1| type I restriction-modification system, M subunit [Opitutus terrae
           PB90-1]
 gi|177840121|gb|ACB74373.1| type I restriction-modification system, M subunit [Opitutus terrae
           PB90-1]
          Length = 547

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 116/501 (23%), Positives = 205/501 (40%), Gaps = 84/501 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------------ECALEPTRS 53
           L   +W  A+ L G     DF   +L F  LR L                 + A +  R 
Sbjct: 9   LGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYDVAAKKELGSDYPKFAADDPRV 68

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIA------ 105
            +   Y    G  +D E  ++   +          +++ L  + +   LE+  A      
Sbjct: 69  PLAIWYANNPGDVVDFEKQMRRKVHYVIKPDHLWANIANLARSESDELLETLKAGFDYIE 128

Query: 106 --SFSDNAKAIFEDFD-FSSTIARLEK------AGLLYKICKNFSGIELHPDTVPDRVMS 156
             SF    + +F + + +S  + R +        G++ KI           DT+ D    
Sbjct: 129 NESFQSTFQGLFSEINLYSEKLGRSQSEKNKKLCGIIKKIADGLKEFSTDTDTLGD---- 184

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
             YE+LI +F +   + A +F TP+ +  + + ++ LD  +    + P  + +++D  CG
Sbjct: 185 -AYEYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQEPKTGKVP-HLGSVFDFACG 242

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +    +      H I  I    GQE    T+ +    ML+  +     +D    
Sbjct: 243 SGSLLLNVRKQMG----AHGIGRIF---GQEKNITTYNLARMNMLLHGV-----KDTEFE 290

Query: 276 IQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GP 326
           I  G TL+ D             +F   ++NPPF  +WE  KD +      GE  RF   
Sbjct: 291 IYHGDTLTNDWDFLRETNPAKMPKFDAVVANPPFSLRWEP-KDEL------GEDVRFKNH 343

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+   S     FL+H  + L+      G  AI+L    LF G A   E  IR  LL++  
Sbjct: 344 GIAPKSAADFAFLLHGFHYLK----DQGVMAIILPHGVLFRGGA---EERIRTKLLKDGH 396

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ LP +LF+ T I   + +L   K  +    V  INA + +    ++GK++ ++ +
Sbjct: 397 IDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHF----DKGKRQNVLTE 449

Query: 447 DQRRQILDIY-VSRENGKFSR 466
           +   +I+  Y + +E  ++S+
Sbjct: 450 EHLEKIVATYQLRKEEARYSK 470


>gi|256826762|ref|YP_003150721.1| type I restriction system adenine methylase HsdM [Cryptobacterium
           curtum DSM 15641]
 gi|256582905|gb|ACU94039.1| type I restriction system adenine methylase HsdM [Cryptobacterium
           curtum DSM 15641]
          Length = 856

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 145/325 (44%), Gaps = 45/325 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+L+ +F +   + A +F TP +V  L + ++     A   +S   I  +YDPT
Sbjct: 164 VLGYIYEYLLEKFATNAGKKAGEFYTPHEVSQLISEIV-----AWHLQSRRQIE-IYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +    VA    +   P  +  + QEL+  T+ +    +++R +  D     +
Sbjct: 218 SGSGSLLINIGKAVARRNGN---PDSIKYYAQELKENTYNLTRMNLVMRGILPD-----N 269

Query: 274 KNIQQGSTLSKD-----LFTGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             ++ G TL+ D         K   Y        +SNPP+ + W    D V+KE      
Sbjct: 270 IAVRNGDTLADDWPWFDTVENKDETYKPLFVDAVVSNPPYSQDW----DPVDKEID---- 321

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RF  G+   S     FL+H    L       G   IVL    LF G     E  IRR L
Sbjct: 322 PRFEYGVAPKSKADYAFLLHDLYHL----RNDGIMCIVLPHGVLFRG---GEEGLIRRNL 374

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E+  I+AI+ LP ++FF T I T + +L  ++       V +++A+  +     EGK  
Sbjct: 375 VEHRHIQAIIGLPANIFFGTGIPTIIMVLRKQRA-AGDDNVLVVDASKYFM---KEGKNN 430

Query: 442 RIINDDQRRQILDIYVSRENGKFSR 466
           ++   D +R +  +  + +   FSR
Sbjct: 431 KLRASDIKRIVDAVTTNTDVDSFSR 455


>gi|194335867|ref|YP_002017661.1| type I restriction-modification system, M subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308344|gb|ACF43044.1| type I restriction-modification system, M subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 544

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 179/419 (42%), Gaps = 61/419 (14%)

Query: 106 SFSDNAKAIFEDFDFSS-------TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           SF+   + +F + + SS       T    +   ++ KI +  +G     DT+ D      
Sbjct: 131 SFASTFQGLFSEINLSSEKLGKHYTDRNAKLCTIITKIAEGLAGFSTDSDTLGD-----A 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTG 217
           YE+LI +F +   + A +F TP+ +  + +A++ LD  +    +   +I  L D  CG+G
Sbjct: 186 YEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVTLDSQEPSSGKKKYLISVL-DFACGSG 244

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +    +   G       I   +GQE    T+ +    ML+  +     +D    I 
Sbjct: 245 SLLLNVRKKMGQYG-------IGKIYGQESNITTYNLARMNMLLHGV-----KDSEFEIF 292

Query: 278 QGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGL 328
            G TL  D            K F   ++NPPF  +WE   DA+      G+  RF   GL
Sbjct: 293 HGDTLLNDWEMLREANPAKKKHFDAVVANPPFSYRWEL-TDAL------GDDVRFKNYGL 345

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL+H    L       G  AI+L    LF G     E  IR  LL++  I+
Sbjct: 346 APKSAADFAFLLHGFQYLAKE----GTMAIILPHGVLFRGGV---EERIRTKLLKDGHID 398

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP +LFF T I   + +L   K  +    V  INA++ +     +GK++  +  D 
Sbjct: 399 TVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINASEHF----EKGKRQNRLRQDD 451

Query: 449 RRQILDIYVSR-ENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             +I++ Y  R E  ++SR   M +  + GY  + + R +  +   ++  L  + AD+ 
Sbjct: 452 IDKIVETYQFRTEEERYSRRVSMDEIESNGY-NLNISRYISTATAEEEIDLTAVHADLV 509


>gi|171779403|ref|ZP_02920367.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282020|gb|EDT47451.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 850

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 47/327 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++ +      K+   +   +YDPT
Sbjct: 164 VLGFIYEYLISMFAANAGKKAGEFYTPHEVSLLMSEIVAEH----LKDRESI--KIYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +     +   S+      +  + QEL+  T+ +    +++R +   P   ++
Sbjct: 218 SGSGSLLINIGKSASKYISNK---DNIKYYAQELKQNTYNLTRMNLVMRGIL--PDNIVT 272

Query: 274 KNIQQGSTLSKD--LFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +N   G TL  D   F  K              +SNPP+ + W    D  +KE  +    
Sbjct: 273 RN---GDTLEDDWPYFDDKDPIATYEPLYVDAVVSNPPYSQSW----DPTDKE-TDPRYA 324

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           RFG   PK       FL+H    ++      G   IVL    LF G     E EIR+ L+
Sbjct: 325 RFGLA-PK-GKADYAFLLHDLFHIK----SDGIMTIVLPHGVLFRG---GEEGEIRKNLI 375

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + I+AI+ LP+++FF T I T + IL  ++       V +++A+         GK  +
Sbjct: 376 EQNHIDAIIGLPSNIFFGTGIPTIIMILKQKR---ENTDVLVVDAS---KGFIKSGKNNK 429

Query: 443 IINDDQRRQILDIYVSREN-GKFSRML 468
           +   D +R I+D+ ++REN   FSR++
Sbjct: 430 LRASDIKR-IVDVVINRENVANFSRVV 455


>gi|254932530|ref|ZP_05265889.1| type I restriction-modification system [Listeria monocytogenes
           HPB2262]
 gi|293584085|gb|EFF96117.1| type I restriction-modification system [Listeria monocytogenes
           HPB2262]
 gi|332310721|gb|EGJ23816.1| Type I restriction-modification system, M subunit [Listeria
           monocytogenes str. Scott A]
          Length = 858

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 162/396 (40%), Gaps = 68/396 (17%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGL---LYKICKNFSG-IELHPD 148
           ++ NN E  IA   D+     +DF   FSS+   L    L   L +  KN    IEL  D
Sbjct: 114 DSLNNFERTIAVSGDS-----DDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQD 168

Query: 149 T-----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F  E  + A +F TPR V  +          A      
Sbjct: 169 LNMVALQKSDVLGDAYEYLIGQFAMESGKKAGEFYTPRQVSEVM---------AQIAAKT 219

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I ++YDPT G+G  L     H+ +      +   L  +GQE    T+ +    +L+  
Sbjct: 220 SNITSIYDPTVGSGSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHG 274

Query: 264 LESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFG-KKWEKDKDAVEKE 315
           +     R    +++ G TLS+D          G  F   + NPP+    W K    V   
Sbjct: 275 V-----RPEKMSVKNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDP 329

Query: 316 HKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                  RF     LP  S G   FL+H    L       G  AIVL    LF G     
Sbjct: 330 -------RFEIAGVLPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRG---GT 375

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWT 432
           E EIR+ LL  + I+ I+ LP +LF  T I   + IL  NR   E    V +I+A+  + 
Sbjct: 376 EGEIRKRLLNKNYIDTIIGLPGNLFTNTGIPVCVLILKKNRAISE---PVLVIDASRNFI 432

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
            +   GK+  +   D  R I+D YV R E   +S +
Sbjct: 433 KV---GKQNELQEKDIAR-IVDTYVERAEKAGYSHL 464


>gi|329903168|ref|ZP_08273390.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
 gi|327548463|gb|EGF33135.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
          Length = 475

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 128/282 (45%), Gaps = 36/282 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F S   +    F TP  +V+   ++L  P              +YDP 
Sbjct: 168 LLGQVYEYFLGQFASAEGKRGGQFYTPASIVNTLVSVLA-PHHG----------QVYDPC 216

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K+  + + +GQE  P T  +    + IR +      D +
Sbjct: 217 CGSGGMFVQSEKFIEAHGG--KLGDVSI-YGQEANPTTWRLAAMNLAIRGI------DFN 267

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   T  ++     R  + L+NPPF    W     ++E +       R+  G P   
Sbjct: 268 LGKEPDDTFVRNQHPDLRADFVLANPPFNISDWWHG--SLEGDP------RWVYGTPPQG 319

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+   L+  P G  RA IVL++  + + +  + E +IRR ++E D +E ++A
Sbjct: 320 NANYAWLQHMLYHLK--PTG--RAGIVLANGSMSSSQ--NTEGDIRRAMVEADKVEVMIA 373

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           LP  LFF T I   LW L   K   R+G+V  I+A  L + I
Sbjct: 374 LPGQLFFNTQIPACLWFLVKEK-RARQGEVLFIDARKLGSMI 414


>gi|148377836|ref|YP_001256712.1| modification (methylase) protein of type irestriction-modification
           system HsdM [Mycoplasma agalactiae PG2]
 gi|148291882|emb|CAL59273.1| Modification (Methylase) protein of type Irestriction modification
           system HsdM [Mycoplasma agalactiae PG2]
          Length = 892

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 173/380 (45%), Gaps = 57/380 (15%)

Query: 106 SFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR-VMSN 157
           S +D  K++F+D    F   +++L     E+  ++  +    + I   P T  D  V+  
Sbjct: 137 SINDAHKSLFKDLFVKFERDLSKLGSDTNEQTKVISSLLDIINDI---PSTNQDYDVLGY 193

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI RF S   + A +F TP +V  L + ++     A   +   +I+ +YDPT G+G
Sbjct: 194 IYEYLIARFASSAGKKAGEFYTPHEVSELMSKIV-----AHHLKDRKVIK-VYDPTSGSG 247

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L           S +   P+   + QEL+ E   +    ++++ +   P    ++N  
Sbjct: 248 SLLLTIGQEFKKYNSGN--SPV-SYYAQELKAEVFNLTRMNLIMKNIS--PTEIHARN-- 300

Query: 278 QGSTLSKD--LFTGKRFH--------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            G TL +D  +F    +           +SNPP+ +KW  +K  ++  +          G
Sbjct: 301 -GDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDPRY-------IEYG 352

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   +     FL+H  +   + P+G     IVL    LF G +   E +IR+ L++   I
Sbjct: 353 IAPKTKADYAFLLH--DLYHVQPDG--IITIVLPHGVLFRGNS---EGQIRKTLIQKQQI 405

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+     EGK  +  +  
Sbjct: 406 DTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVK---EGKNNK-FSKS 458

Query: 448 QRRQILDIYVSR-ENGKFSR 466
             ++I D+  +R E   FSR
Sbjct: 459 HIKKIADVVNNRIEIENFSR 478


>gi|90425136|ref|YP_533506.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18]
 gi|90107150|gb|ABD89187.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18]
          Length = 489

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 129/310 (41%), Gaps = 63/310 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L+ +  S+   GA  + TPR ++     L+           P +  T+ DP  
Sbjct: 125 LGTLYEGLLEKNASDKKSGAGQYFTPRPLIDCIVRLM----------KPHVGETVQDPAA 174

Query: 215 GTGGFLTDAMNHVAD-CGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A  ++ D     +K+P   V        +G EL P+TH +C+  +L+  +E 
Sbjct: 175 GTAGFIVAADRYIKDRTDDLYKLPEQQVFFQRHHAFNGAELVPDTHRLCMMNLLLHGIEG 234

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    ++   TLS D     +    L+NPPFG K                    G 
Sbjct: 235 --------GVELADTLSPDGERLSKADLILTNPPFGTK-------------------KGG 267

Query: 327 GLPKISDGS---------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           G P  SD S         + F+ H+   L+     GGRAA+V+  + LF    G    ++
Sbjct: 268 GRPTRSDFSITADTSNKQLAFVEHVVRALK----AGGRAAVVVPDNVLFEDNTGR---DL 320

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R WL++   +  I+ LPT +F+   + T +      KT+  +   + +   DL  ++   
Sbjct: 321 RTWLMDLCSLHTILRLPTGIFYAQGVKTNVLFFQRGKTD--KANTKTVWVYDLRANMPAF 378

Query: 438 GKKRRIINDD 447
           GK R +   D
Sbjct: 379 GKTRPLTAAD 388


>gi|296171676|ref|ZP_06852890.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894037|gb|EFG73800.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 457

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 122/281 (43%), Gaps = 43/281 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +M  +YE+ +  F         +F TP  VV +   +L           P   R +YDP 
Sbjct: 104 LMGELYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEVL----------EPASGR-VYDPC 152

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG        VA+   H      +   GQE   +T  +    + +  ++     D  
Sbjct: 153 CGSGGMFVQTERFVAE---HDGDSAKISFWGQESVEQTWRLAKMNLAVHGID-----DTG 204

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              + G TL  D   G +  Y L+NPPF  K+W +D    E++ +     RFG  +P   
Sbjct: 205 LGARWGDTLLADQHAGIQMDYVLANPPFNIKEWARD----ERDPRW----RFG--VPPAG 254

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEA 389
           + +  ++ H+ +KL      GG+A +V++     NG   S    E EIR  +++ DL+  
Sbjct: 255 NANYAWIQHILSKLAP----GGKAGVVMA-----NGSMSSNALREGEIRARIVDADLVSC 305

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +VALP  LF  T I   LW     K   R G+V  I+A  L
Sbjct: 306 MVALPAQLFRSTPIPVCLWFFDTDKG-TRSGQVLFIDARGL 345


>gi|331650405|ref|ZP_08351477.1| HsdM site-specific DNA-methyltransferase, type I modification
           [Escherichia coli M605]
 gi|331040799|gb|EGI12957.1| HsdM site-specific DNA-methyltransferase, type I modification
           [Escherichia coli M605]
          Length = 568

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 152/341 (44%), Gaps = 59/341 (17%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           ++G++L+  +    ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 192 YNGVKLNLKS--KDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML-------- 241

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHH----KIPPILVPHGQELEPETHAV 254
              P   R +YDP  G+GGF   +   + A     H    +    +  +GQE  P T  +
Sbjct: 242 --QPYNGR-VYDPAMGSGGFFVSSDRFIEAHADEKHYNAAEQKRNISVYGQESNPTTWRL 298

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKW--EKDKDA 311
               M+IR +      D +   Q   T   D     R  + ++NPPF  K+W   K +D 
Sbjct: 299 AAMNMVIRGI------DFNFGKQNADTFLNDQHPDLRADFVMANPPFNMKEWWNAKLEDD 352

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           V          R+  G P   + +  ++ H+ +   L P G    A++L++  + +    
Sbjct: 353 V----------RWQYGTPPQGNANFAWMQHMIH--HLAPKGS--MALLLANGSMSSNT-- 396

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLIN 426
           + E EIRR ++E DL+E +VALP  LF  T I   +W+L+  K+       R+G+V  I+
Sbjct: 397 NSEGEIRRAIIEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGSNGKAHRKGEVLFID 456

Query: 427 ATDLWTSIRNEG-KKRRIIND---DQRRQILDIYVSRENGK 463
           A       R  G  K R++ D   D  ++I D + S +  K
Sbjct: 457 A-------RQIGFMKERVLRDFSTDDIKKIADTFHSWQMDK 490


>gi|118444367|ref|YP_878481.1| type I restriction-modification system DNA methylase [Clostridium
           novyi NT]
 gi|118134823|gb|ABK61867.1| type I restriction-modification system DNA methylase [Clostridium
           novyi NT]
          Length = 705

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 51/332 (15%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ + F+  EL        V   IYE+ + +F    ++   +F TP  +V +   ++
Sbjct: 131 LLRELLRKFNSDELR--NAKGDVFGRIYEYFLNKFAMTGAQEGGEFFTPISLVQMIVNVI 188

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
            +P+  +          + DP CG+ G      + +   G+          +GQE     
Sbjct: 189 -EPEQGI----------VLDPACGSAGMFVQTGHFIQSHGASANDKVTF--YGQEKAELN 235

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDK 309
             +    M +  LE          I +G+T  +D     GK  +Y ++NPPF      + 
Sbjct: 236 TKLARMNMAVHGLEG--------KILEGNTFYEDKHELLGK-CNYVMANPPF------NV 280

Query: 310 DAVEKEH-KNGELGRFG-PGLPK----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           D V+ E  K      FG PG+ K    +S+ + L++ +  + L    N  GRA  V++SS
Sbjct: 281 DGVDSEKIKTDPRLPFGLPGVNKKSKAVSNANYLWIQYFYSYL----NEKGRAGFVMASS 336

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
                 AG GE ++R  L++ + ++ I+++  + F+  ++   LW     K+E+++ KV 
Sbjct: 337 AT---DAGHGEKDVRERLIKTNDVDVIISIGNNFFYTRSLPCTLWFFDKNKSEDKKDKVL 393

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +I+A +++  +       R IND    Q+ +I
Sbjct: 394 MIDARNIFRKV------NRTINDFSEEQLKNI 419


>gi|284055706|pdb|3KHK|A Chain A, Crystal Structure Of Type-I Restriction-Modification
           System Methylation Subunit (Mm_0429) From
           Methanosarchina Mazei.
 gi|284055707|pdb|3KHK|B Chain B, Crystal Structure Of Type-I Restriction-Modification
           System Methylation Subunit (Mm_0429) From
           Methanosarchina Mazei
          Length = 544

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 36/289 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 204 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------EPYKGR-VYDPA 252

Query: 214 CGTGGFLTDA------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            G+GGF   +        +V    +  +   I V +GQE  P T  +    M+IR +   
Sbjct: 253 MGSGGFFVSSDKFIEKHANVKHYNASEQKKQISV-YGQESNPTTWKLAAMNMVIRGI--- 308

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
              D +   +   +   D     R  + ++NPPF  K W  +K A +        G    
Sbjct: 309 ---DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRI 365

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             P   + +  +++H+     L P G    A++L++  + +    + E EIR+ L+E DL
Sbjct: 366 LTPPTGNANFAWMLHML--YHLAPTGS--MALLLANGSMSSNT--NNEGEIRKTLVEQDL 419

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDL 430
           +E +VALP  LF  T I   +W L+  K       +RRG+V  I+A  L
Sbjct: 420 VECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVLFIDARKL 468


>gi|208780344|ref|ZP_03247685.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
 gi|208743712|gb|EDZ90015.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
          Length = 512

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 143/335 (42%), Gaps = 57/335 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 154 VLGHVFEYFLGEFALAEGKQGGQFYTPKSVVELLVKML----------EPYKGR-VFDPC 202

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T  +C   + IR ++S   +  S
Sbjct: 203 CGSGGMFVQSEKFVE---SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNS 259

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL----GRFGPGL 328
               +GS L+ D     +  Y ++NPPF    W            +GEL     R+  G 
Sbjct: 260 ----EGSFLN-DAHKDLKADYIIANPPFNISDW------------SGELLRNDARWQYGT 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  S+ +  ++ H      L P G   A  VL+   L +    SGE +IR+ L+E +L++
Sbjct: 303 PPASNANYAWIQHFL--YHLAPTG--VAGFVLAKGALTSNT--SGEGDIRKALVEANLVD 356

Query: 389 AIVALPTDLFFRTNIATYLWILS-NRKTEERRGKVQLINATDLWTSIRNEGKK-RRIIND 446
            IV LP  LF  T I   LW +   RKT++    +  I+A       RN+G    RI  +
Sbjct: 357 CIVNLPAKLFLNTQIPASLWFIKRGRKTKD----ILFIDA-------RNKGHLINRITKE 405

Query: 447 DQRRQILDIYVSRENGKFS--RMLDYRTFGYRRIK 479
                I +I  +  N K S    LD ++  Y  IK
Sbjct: 406 FSDDDITEIAQTYHNWKLSCHSELDSKSHKYEDIK 440


>gi|21226531|ref|NP_632453.1| type I restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
 gi|20904801|gb|AAM30125.1| type I restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
          Length = 576

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 36/289 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 203 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------EPYKGR-VYDPA 251

Query: 214 CGTGGFLTDA------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            G+GGF   +        +V    +  +   I V +GQE  P T  +    M+IR +   
Sbjct: 252 MGSGGFFVSSDKFIEKHANVKHYNASEQKKQISV-YGQESNPTTWKLAAMNMVIRGI--- 307

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
              D +   +   +   D     R  + ++NPPF  K W  +K A +        G    
Sbjct: 308 ---DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRI 364

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             P   + +  +++H+     L P G    A++L++  + +    + E EIR+ L+E DL
Sbjct: 365 LTPPTGNANFAWMLHML--YHLAPTGS--MALLLANGSMSSNT--NNEGEIRKTLVEQDL 418

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDL 430
           +E +VALP  LF  T I   +W L+  K       +RRG+V  I+A  L
Sbjct: 419 VECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVLFIDARKL 467


>gi|37679000|ref|NP_933609.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37197742|dbj|BAC93580.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 546

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 39/317 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           ++ + YE+LI  F +   + A +F TP+ +  + + ++ LD  +    +   + R L D 
Sbjct: 186 ILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKKNKLNRVL-DF 244

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +   H+   G       I   +GQE    T+ +    ML+  +     +D 
Sbjct: 245 ACGSGSLLLNVRKHITVAGG-----SIGKIYGQEKNITTYNLARMNMLLHGV-----KDT 294

Query: 273 SKNIQQGSTLSKD--LFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +I  G TL  D  L   K      +F   ++NPPF  +WE D+   +++       RF
Sbjct: 295 EFDIFHGDTLFNDWELLNEKNPAKKLKFDAVVANPPFSYRWESDRAEFKEDF------RF 348

Query: 325 -GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+   S     FL+H  + L    +  G  AI+L    LF  R+G+ E  IR  LL+
Sbjct: 349 KNHGIAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLF--RSGA-EQRIRSKLLK 401

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ ++ LP++LFF T I   + +L   K  ++   V  INA+D       +GK++  
Sbjct: 402 DGHIDTVIGLPSNLFFSTGIPVCILVL---KKCKKYDDVLFINASD--EENFEKGKRQNK 456

Query: 444 INDDQRRQILDIYVSRE 460
           +  +  ++I+D Y  R+
Sbjct: 457 LRPEDIQKIVDTYRFRD 473


>gi|256851078|ref|ZP_05556467.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660504|ref|ZP_05861419.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933734|ref|ZP_06339089.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|297205944|ref|ZP_06923339.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus jensenii JV-V16]
 gi|256616140|gb|EEU21328.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548226|gb|EEX24201.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302113|gb|EFA94360.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|297149070|gb|EFH29368.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus jensenii JV-V16]
          Length = 550

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 51/369 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           S + + +F D +   +  RL     ++A  + KI +    IE   +   D ++  IYE+L
Sbjct: 132 SQDFRGVFNDVNLGDS--RLGSNTNDRAKSISKIVQLVDTIEYKDENGKD-ILGTIYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   +   +F TP +V  +   L+     A  K  P     +YDPTCG+G  L  
Sbjct: 189 IGQFAASAGKKGGEFYTPFEVSKVLAKLVT----ANLKGEPEEFE-VYDPTCGSGSLLLT 243

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               V       K P ++  +GQE    T+ +    +++  +E       + ++    TL
Sbjct: 244 VQGEVPGG----KKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEF-----TNIHLSNADTL 294

Query: 283 SKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             D   G            F   ++NPP+   W+ +    E + K+     +G   PK +
Sbjct: 295 EADWPDGLDAQGVDRPKTNFDAVVANPPYSAHWDNN----ENKLKDPRFSAYGKLAPK-T 349

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H      L P G    AIVL    LF G A   E  IR+ ++E + ++A++ 
Sbjct: 350 KADYAFVLH--GLYHLSPEG--TMAIVLPHGVLFRGAA---EGVIRQNIIEKNYLDAVIG 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+  +I T + +    K   +   +  I+A+  +   +N+ K    + ++   +I
Sbjct: 403 LPANLFYGVSIPTIVLVF---KKNRQNKDIFFIDASREFEKGKNQNK----LTEENIDKI 455

Query: 453 LDIYVSREN 461
           +  Y+ RE+
Sbjct: 456 ISTYLKRED 464


>gi|261419106|ref|YP_003252788.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|261375563|gb|ACX78306.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
          Length = 493

 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 129/300 (43%), Gaps = 45/300 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L+ +  SE+  GA  + TPR ++ +    L+DP        PG     +DP  
Sbjct: 122 LGALYEGLLEKNASELKSGAGQYFTPRVLIDVIVE-LVDP-------KPG--ERCHDPAA 171

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A  HV      +        +        G EL  +TH + V   L+     
Sbjct: 172 GTFGFMIAASRHVRAKTDDYFDLSEEEIRFQKYKAFSGVELVRDTHRLAVMNALL----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+  +I  G TLS      K +   L+NPPFG K            K GE      
Sbjct: 227 ---HDVHGDILLGDTLSPLGEQLKGYDVILTNPPFGTK------------KGGERATRTD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L   PNG  RAA+V+  + LF G  G   ++IRR L++   
Sbjct: 272 FTFMTSNKQLNFLQHIYRALR--PNGKARAAVVVPDNVLFEGGVG---ADIRRDLMDKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  I+ LPT +F+   + T +   +  +T+   G  + +   DL T++ + GK+  +  D
Sbjct: 327 VHTILRLPTGIFYAQGVKTNVLFFTRGETD--TGNTKEVWVYDLRTNMPSFGKRNPLTKD 384


>gi|238855187|ref|ZP_04645508.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|282934313|ref|ZP_06339583.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|313472057|ref|ZP_07812549.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 1153]
 gi|238832216|gb|EEQ24532.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|239530086|gb|EEQ69087.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 1153]
 gi|281301597|gb|EFA93871.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
          Length = 550

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 51/369 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           S + + +F D +   +  RL     ++A  + KI +    IE   +   D ++  IYE+L
Sbjct: 132 SQDFRGVFNDVNLGDS--RLGSNTNDRAKSISKIVQLVDTIEYKDENGKD-ILGTIYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   +   +F TP +V  +   L+     A  K  P     +YDPTCG+G  L  
Sbjct: 189 IGQFAASAGKKGGEFYTPFEVSKVLAKLVT----ANLKGEPEEFE-VYDPTCGSGSLLLT 243

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               V       K P ++  +GQE    T+ +    +++  +E       + ++    TL
Sbjct: 244 VQGEVPGG----KKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEF-----TNIHLSNADTL 294

Query: 283 SKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             D   G            F   ++NPP+   W+ +    E + K+     +G   PK +
Sbjct: 295 EADWPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNN----ENKLKDPRFSAYGKLAPK-T 349

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H      L P G    AIVL    LF G A   E  IR+ ++E + ++A++ 
Sbjct: 350 KADYAFVLH--GLYHLSPEG--TMAIVLPHGVLFRGAA---EGVIRQNIIEKNYLDAVIG 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+  +I T + +    K   +   +  I+A+  +   +N+ K    + ++   +I
Sbjct: 403 LPANLFYGVSIPTIVLVF---KKNRQNKDIFFIDASREFEKGKNQNK----LTEENIDKI 455

Query: 453 LDIYVSREN 461
           +  Y+ RE+
Sbjct: 456 ISTYLKRED 464


>gi|315637034|ref|ZP_07892257.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315478570|gb|EFU69280.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 494

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 59/272 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE L++  GS+     E F TPR ++ + T ++          +P + +T+YDP  
Sbjct: 155 LSLIYEKLLKDMGSDGGNSGE-FYTPRPLIKVITDVV----------NPTIGQTIYDPAV 203

Query: 215 GTGGFLTDAMNHV--ADCGSHH---------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G+ GFL +A NH+  AD  ++          K        G E  P ++ + V  M++  
Sbjct: 204 GSCGFLIEAYNHIRYADVQNNKQRDLSTDQLKFLNEDTFFGNEKTPLSYVMGVMNMILHG 263

Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E       S NI + +TL+KD   L    RF   L+NPPFG K        EKE     
Sbjct: 264 IE-------SPNIAKSNTLTKDIRGLEEKDRFDCILANPPFGGK--------EKE----- 303

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+ N L+L    GG+  +V+    LF  +  +    +++
Sbjct: 304 --QIQQNFPIKSNATELLFLQHMMNHLKL----GGKCGVVIPEGVLF--QTNNAFQSVKK 355

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNIATY 406
            LLE   +  I++LP+ +F      +TN+  +
Sbjct: 356 DLLERFNVHTILSLPSGVFLPYSAVKTNVVFF 387


>gi|297530925|ref|YP_003672200.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
 gi|297254177|gb|ADI27623.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
          Length = 493

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 129/300 (43%), Gaps = 45/300 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L+ +  SE+  GA  + TPR ++ +    L+DP        PG     +DP  
Sbjct: 122 LGALYEGLLEKNASELKSGAGQYFTPRVLIDVIVE-LVDP-------KPG--ERCHDPAA 171

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A  HV      +        +        G EL  +TH + V   L+     
Sbjct: 172 GTFGFMIAASRHVRAKTDDYFDLSEEEIRFQKYEAFSGVELVRDTHRLAVMNALL----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+  +I  G TLS      K +   L+NPPFG K            K GE      
Sbjct: 227 ---HDVHGDILLGDTLSPLGEQLKGYDVILTNPPFGTK------------KGGERATRTD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L   PNG  RAA+V+  + LF G  G   ++IRR L++   
Sbjct: 272 FTFMTSNKQLNFLQHIYRALR--PNGKARAAVVVPDNVLFEGGVG---ADIRRDLMDKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  I+ LPT +F+   + T +   +  +T+   G  + +   DL T++ + GK+  +  D
Sbjct: 327 VHTILRLPTGIFYAQGVKTNVLFFTRGETD--TGNTKEVWVYDLRTNMPSFGKRNPLTKD 384


>gi|313894016|ref|ZP_07827582.1| putative type I restriction-modification system, M subunit
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441580|gb|EFR60006.1| putative type I restriction-modification system, M subunit
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 579

 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 53/342 (15%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  LL  I + F  I   P+     +   IYE+ +  F     +    F TP  VV   
Sbjct: 135 EEPELLSNIVRIFKDI---PENSTVDIFGEIYEYFLGNFALAEGKDGGTFYTPATVVRYM 191

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L           PG  + L DP CG+GG    A  ++ +  +          +G E 
Sbjct: 192 VEVL--------NPQPGEKKFL-DPACGSGGMFVQAARYMHNHNASESEQMKFRCYGVEK 242

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWE 306
           EP+T  +    +L+  +  D        I Q ++   D +    +F Y ++NPPF     
Sbjct: 243 EPDTVKLAKMNLLLNNIRGD--------ITQANSFYSDPYNAAGQFDYVMANPPFNV--- 291

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---------------ISDGSMLFLMHLANKLELPPN 351
            D+  VEK   +     +G  +P+               + + + L++ + A  L    N
Sbjct: 292 -DEVVVEKVSDDVRFNTYG--VPRNKSKSTKKKSDKKETVPNANYLWIGYFATAL----N 344

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA+V+++S      A   E +IR+ ++E  +I  +V LP+++F    +   LW   
Sbjct: 345 ENGKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTLPSNMFSSVTLPATLWFFD 401

Query: 412 NRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            +K   +++ ++  I+A +++T +    +  R  +D+Q + +
Sbjct: 402 KQKPNTDKKNEILFIDARNVFTQV---DRAHRKFSDEQIKNL 440


>gi|237751050|ref|ZP_04581530.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
 gi|229373495|gb|EEO23886.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
          Length = 501

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 151/335 (45%), Gaps = 47/335 (14%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I L+ +   D ++ +I+E+ +  F     +    F TP+ VV L  A+L +P +      
Sbjct: 139 ISLNQENTSD-ILGHIFEYFLGEFALSEGKKGGQFYTPKSVVELLVAML-EPYNG----- 191

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 ++DP CG+GG    +   V +     KI  I + +GQE    T  +    + +R
Sbjct: 192 -----RVFDPCCGSGGMFVQSERFVRE--HQGKISDISI-YGQESNQTTWRLAKMNLALR 243

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGEL 321
           +++S   +  S    +GS L+ D     +  + ++NPPF    W    +A+E +      
Sbjct: 244 KIDSSSLKWNS----EGSFLN-DAHKDLKADFIIANPPFNATDW--GSEALEND------ 290

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P  ++ +  ++ H  +   L P G  RA  VL+   L +    S E +IR+ L
Sbjct: 291 VRWQYGTPPSTNANYAWISHFIH--HLAPKG--RAGFVLAKGSLTSNT--STEGQIRKNL 344

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E++LIE IV LP  LF  T I   LW +   K+         I+A  L   I    +K 
Sbjct: 345 IESNLIECIVNLPAKLFLNTQIPACLWFIKRNKS---HNNTLFIDARSLGELI---NRKN 398

Query: 442 RIINDDQRRQILDIY------VSRENGKFSRMLDY 470
           RI+      +I + Y        +++G++S +L +
Sbjct: 399 RILTQSDIAKITETYHKWQKAQEQQSGEYSDILGF 433


>gi|300113975|ref|YP_003760550.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299539912|gb|ADJ28229.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus watsonii C-113]
          Length = 570

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 48/306 (15%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F G +L  D     ++ ++YE+ + +F     +    + TP+ +V L  A+L        
Sbjct: 190 FDGEQL--DLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVAML-------- 239

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAV 254
              P   R +YDP  G+GGF   +   + +    H   P      +  +GQE  P T  +
Sbjct: 240 --EPYSGR-VYDPAMGSGGFFVSSDKFIEEHAKEHHYDPSEQKKHISVYGQESNPTTWRL 296

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVE 313
               M IR +      D +   +   T   D     R  + ++NPPF  K W  +  A +
Sbjct: 297 AAMNMAIRGI------DFNFGKKNADTFLDDQHPDLRADFVMANPPFNMKDWWSESLADD 350

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    R+  G P   + +  ++ H+ +   L P G    A++L++  +      + 
Sbjct: 351 --------ARWQYGTPPKGNANFAWMQHMIH--HLAPTGS--MALLLANGSM--SSHTNN 396

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQL 424
           E  IR+ L+E DL+E + ALP  LF  T I   +W L+         N K  +RR +   
Sbjct: 397 EGGIRQRLVEEDLVECMAALPGQLFTNTQIPACIWFLTRDKANGLVRNEKKRDRREEFLF 456

Query: 425 INATDL 430
           I+A +L
Sbjct: 457 IDARNL 462


>gi|260664498|ref|ZP_05865350.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
 gi|260561563|gb|EEX27535.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
          Length = 550

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 51/369 (13%)

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           S + + +F D +   +  RL     ++A  + KI +    IE   +   D ++  IYE+L
Sbjct: 132 SQDFRGVFNDVNLGDS--RLGSNTNDRAKSISKIVQLVDTIEYKDENGKD-ILGTIYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   +   +F TP +V  +   L+     A  K  P     +YDPTCG+G  L  
Sbjct: 189 IGQFAASAGKKGGEFYTPFEVSKVLAKLVT----ANLKGEPEEFE-VYDPTCGSGSLLLT 243

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               V       K P ++  +GQE    T+ +    +++  +E       + ++    TL
Sbjct: 244 VQGEVPGG----KKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEF-----TNIHLSNADTL 294

Query: 283 SKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             D   G            F   ++NPP+   W+ +    E + K+     +G   PK +
Sbjct: 295 EADWPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNN----ENKLKDPRFSAYGKLAPK-T 349

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H      L P G    AIVL    LF G A   E  IR+ ++E + ++A++ 
Sbjct: 350 KADYAFVLH--GLYHLSPEG--TMAIVLPHGVLFRGAA---EGVIRQNIIEKNYLDAVIG 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+  +I T + +    K   +   +  I+A+  +   +N+ K    + ++   +I
Sbjct: 403 LPANLFYGVSIPTIVLVF---KKNRQNKDIFFIDASREFEKGKNQNK----LTEENIDKI 455

Query: 453 LDIYVSREN 461
           +  Y+ RE+
Sbjct: 456 ISTYLKRED 464


>gi|255693566|ref|ZP_05417241.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260620632|gb|EEX43503.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 494

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 51/336 (15%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           +L  L   N+R      I  +  N    FE      T  RL K   L ++   F  + L 
Sbjct: 90  ALYELEQANSR-----VIEGYEINRAINFESNILGDTDERLSK---LRELLHFFQKLTLT 141

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D      +  +Y  L+  F  E  +   + +TP++V+ L   L+ D  D          
Sbjct: 142 DDAGKLIDIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIGDNKDN--------- 192

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            +L DP  G+G  L +    V   G++          GQE     +A+    +++   + 
Sbjct: 193 NSLCDPVSGSGTLLVEVGKRVGIRGAN--------IFGQEANWNQYALTKMNLMLNGFKD 244

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                       G +LS    T     KRF    S PPF  KW  ++   ++       G
Sbjct: 245 S-------TFFWGDSLSNPKLTDDGGLKRFDIVASIPPFADKWATEEAEFDR------YG 291

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           RF  G+P  S  +  ++ H+   L+  PNG  RA +V+ +  LF     + ES+IR  ++
Sbjct: 292 RFQYGIPPRSQATWAYISHILASLK--PNG--RAVVVVPAGVLFR----TSESKIRHQII 343

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEE 417
           E++L+EA++ LP +LF+   I+T + +   +RKT +
Sbjct: 344 EHNLLEAVIELPQNLFYGAAISTAILVFRKDRKTTQ 379


>gi|229195091|ref|ZP_04321866.1| N-6 DNA methylase [Bacillus cereus m1293]
 gi|228588320|gb|EEK46363.1| N-6 DNA methylase [Bacillus cereus m1293]
          Length = 484

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 47/316 (14%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L KI K+   ++ +        + ++YE L+ +  SE   GA  + TPR ++ +   L+ 
Sbjct: 111 LEKIIKSIDNLDWY--NAEKEGLGDLYEGLLEKNASETKSGAGQYFTPRVLIDVMVKLV- 167

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVPH-------G 244
                     P +     DP  GT GF+  A  ++ +    +  I P            G
Sbjct: 168 ---------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDPEQAEFQKTEAFTG 218

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL  +TH + +   L+  +E          ++QG TLS +    K F   L+NPPFG K
Sbjct: 219 MELVKDTHRLALMNALLHGIEG--------RLEQGDTLSSNGKWIKNFDVILTNPPFGTK 270

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       K GE         + S+  + FL  + N L+   +G  RAA+VL  + 
Sbjct: 271 ------------KGGERATRDDLTFETSNKQLNFLQLIYNALK--DDGNARAAVVLPDNV 316

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  KT+  +   + 
Sbjct: 317 LFEGGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKTD--KNSTKE 371

Query: 425 INATDLWTSIRNEGKK 440
           +   DL T++ + GK+
Sbjct: 372 VWVYDLRTNMPSFGKR 387


>gi|298375955|ref|ZP_06985911.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_19]
 gi|298266992|gb|EFI08649.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_19]
          Length = 549

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 133/507 (26%), Positives = 214/507 (42%), Gaps = 87/507 (17%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKY---------- 59
           L   +W+ A+DL G     DF   +L F  LR L +  +E T+  +   Y          
Sbjct: 9   LGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYLSDNYIEATKKELGGDYPDKAPEELKE 68

Query: 60  --------LAFGGSNIDLESFVK--------VAGYSFYNTSEYSLSTLGSTNTRNNLES- 102
                   L +  +  D+  F K        V    +  T+ Y L+   + +    LE  
Sbjct: 69  RGVSTPLQLWYRENPEDVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDDLLKTLEKG 128

Query: 103 --YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYK-ICKNFSGI-ELHPDTVP 151
             YI   SF    + +F + + +S   +L     E+  LL K I K   GI +   DT  
Sbjct: 129 FKYIENESFDRAFQGLFSEINLNSD--KLGKNYEERNALLCKVITKIAEGIAQFSTDT-- 184

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLY 210
             ++ + YE+LI  F +   + A +F TP+ +  + + ++ LD  D        + R L 
Sbjct: 185 -DILGDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTQDPKSGMKKKLERVL- 242

Query: 211 DPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           D  CG+G  L +  + + A+ G+  KI      +GQE    T+ +    ML+  +     
Sbjct: 243 DFACGSGSLLLNVRHRMKANGGNIGKI------YGQEKNITTYNLARMNMLLHGV----- 291

Query: 270 RDLSKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +D    I  G +L  D      +   K+  F   ++NPPF  +WE  ++        G+ 
Sbjct: 292 KDSEFEIHHGDSLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPTEEM-------GKD 344

Query: 322 GRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR  
Sbjct: 345 FRFNNYGLAPKSAADFAFLLHGFHFLK----QDGTMAIILPHGVLFRGGA---EERIRTK 397

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL++  I+A++ LP +LFF T I   + +L   K  +    V  INA+D       +GK+
Sbjct: 398 LLKDGNIDAVIGLPANLFFSTGIPVCILVLKKCKKSD---DVLFINASD--KENFEKGKR 452

Query: 441 RRIINDDQRRQILDIYVSR-ENGKFSR 466
           +  +      +I+D Y  R E  ++SR
Sbjct: 453 QNKLRTKDIDKIIDTYKQRKEEERYSR 479


>gi|237752774|ref|ZP_04583254.1| type I restriction-modification system [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376263|gb|EEO26354.1| type I restriction-modification system [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 507

 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 151/335 (45%), Gaps = 47/335 (14%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I L+ +   D ++ +I+E+ +  F     +    F TP+ VV L  A+L +P +      
Sbjct: 145 ISLNQENTSD-ILGHIFEYFLGEFALSEGKKGGQFYTPKSVVELLVAML-EPYNG----- 197

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 ++DP CG+GG    +   V +     KI  I + +GQE    T  +    + +R
Sbjct: 198 -----RVFDPCCGSGGMFVQSERFVRE--HQGKISDISI-YGQESNQTTWRLAKMNLALR 249

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGEL 321
           +++S   +  S    +GS L+ D     +  + ++NPPF    W    +A+E +      
Sbjct: 250 KIDSSSLKWNS----EGSFLN-DAHKDLKADFIIANPPFNATDW--GSEALEND------ 296

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P  ++ +  ++ H  +   L P G  RA  VL+   L +    S E +IR+ L
Sbjct: 297 VRWQYGTPPSTNANYAWISHFIH--HLAPKG--RAGFVLAKGSLTSNT--STEGQIRKNL 350

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E++LIE IV LP  LF  T I   LW +   K+         I+A  L   I    +K 
Sbjct: 351 IESNLIECIVNLPAKLFLNTQIPACLWFIKRNKS---HNNTLFIDARSLGELI---NRKN 404

Query: 442 RIINDDQRRQILDIY------VSRENGKFSRMLDY 470
           RI+      +I + Y        +++G++S +L +
Sbjct: 405 RILTQSDIAKITETYHKWQKAQEQKDGEYSDILGF 439


>gi|187476895|ref|YP_784919.1| restriction-modification system, modification (methylase) subunit
           [Bordetella avium 197N]
 gi|115421481|emb|CAJ47989.1| restriction-modification system, modification (methylase) subunit
           [Bordetella avium 197N]
          Length = 924

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 204/490 (41%), Gaps = 72/490 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA---VREKYLAFGGSNI 67
           LA  IW++A  +    +  ++   IL F   + L   L    SA     E + A    + 
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDRLVAFASAEDFTDEDFSAVTEEDT 65

Query: 68  D-LESFVKVAGYSFYNTSEYSL-----STLGSTNTRNNLESYIASFSDNAKAIFEDF--- 118
           + +E F    GY   +   +S      S     + R  L ++      N K +FE     
Sbjct: 66  ETVEHFKSNLGYFIAHKHLFSTWLDQTSDFTVGDVREALSAFSRLIHPNHKRLFEGIFKT 125

Query: 119 ------DFSSTIARLEKA-GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                     T A+  KA G L ++ K+   I +      D V+  IYE+LI  F +   
Sbjct: 126 LETGLSKLGDTAAKQTKAIGDLLQLIKD---IPMDGKQGYD-VLGFIYEYLIGMFAASAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + ++        K+   +   +YD T G+G  L +    +A   
Sbjct: 182 KKAGEFYTPHEVSVLMSEVIAHH----LKDRETI--QIYDSTSGSGSLLLNIGQAIA--- 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----- 286
            H      +  + QEL+  T+ +    +++R +   P   +++N     TL  D      
Sbjct: 233 KHMGDKDSIKYYAQELKENTYNLTRMNLVMRGIL--PGNIVTRN---ADTLEDDWPYFDE 287

Query: 287 ------FTGKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                 +        +SNPP+ +KW+   KDA      +    RFG  L   S     FL
Sbjct: 288 QDPVNSYNPLYLDAVVSNPPYSQKWDPLHKDA------DPRYARFG--LAPKSKADYAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  +   L PNG    AIVL    LF G     E  IR+ L+END +E I+ LP+++FF
Sbjct: 340 LH--DLYHLKPNG--IMAIVLPHGVLFRG---GEEGVIRKQLIENDHLETIIGLPSNIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L  ++       V  ++A+        EGK  ++   D ++ I D+ ++R
Sbjct: 393 GTGIPTVILVLRQKR---ESSDVLFVDAS---KGFAKEGKNNKLRACDIKK-ITDVVIAR 445

Query: 460 EN-GKFSRML 468
                FSR++
Sbjct: 446 ATVPGFSRLV 455


>gi|187931566|ref|YP_001891550.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712475|gb|ACD30772.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 482

 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 257

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 258 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGDK---------------EKATIQTNF 302

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 303 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 356

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 357 HTIVSLPAGVFL 368


>gi|238018337|ref|ZP_04598763.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748]
 gi|237864808|gb|EEP66098.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748]
          Length = 914

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 157/330 (47%), Gaps = 53/330 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+LI +F +   + A +F TP +V  L + ++ +      K+   +   +YDPT
Sbjct: 164 VLGFVYEYLIEKFAANAGKKAGEFYTPHEVSLLMSDIVAEH----LKDRNKI--EIYDPT 217

Query: 214 CGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  + +    V+      +KI      + QEL+  T+ +    +++R +E+D     
Sbjct: 218 SGSGSLMINIGQSVSKYVTGENKIKY----YAQELKRNTYNLTRMNLVMRGIEAD----- 268

Query: 273 SKNI--QQGSTLSKD---------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNG 319
             NI  + G TL +D         L T +  +    +SNPP+ + W  D    E + +  
Sbjct: 269 --NIVTRNGDTLEEDWPYFDENDPLGTYQPLYVDAVISNPPYSQPW--DPSDKETDSRYA 324

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E G    G          FL+H  +   + P+G     IVL    LF G     E  IR+
Sbjct: 325 EYGLAPKG-----KADYAFLLH--DLYHIRPDG--IMNIVLPHGVLFRGNE---EGMIRK 372

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+E + I+AI+ LP ++F+ T+I T + +L  ++       V  I+A+  +     +GK
Sbjct: 373 NLIEKNKIDAIIGLPANIFYGTSIPTIIMVLKQKR---ENTDVLFIDASKGFIK---DGK 426

Query: 440 KRRIINDDQRRQILDIYVSREN-GKFSRML 468
             ++ + D ++ I+D  ++REN  KFSR++
Sbjct: 427 NNKLRSSDIKK-IVDTVINRENIDKFSRVV 455


>gi|262165309|ref|ZP_06033046.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio mimicus VM223]
 gi|262025025|gb|EEY43693.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio mimicus VM223]
          Length = 496

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 49/316 (15%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           NL++  A    N +       F      ++   LL ++    + I+   DT    +  +I
Sbjct: 89  NLKNMAAPVDTNPRGYVVKEAFRDAYNYMKNGTLLRQVINKLNEIDF-TDTQERHLFGDI 147

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++R   S  + G  +F TPR V    T  ++D  D      P +   ++DP+CGTGG
Sbjct: 148 YEQILRDLQSAGNAG--EFYTPRAV----TRFIVDRLD------PKLGENVFDPSCGTGG 195

Query: 219 FLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           FLT A+NH+ + G    S          HG E +   H +C+  +++  +E      +  
Sbjct: 196 FLTCAINHIQEHGKPETSEQYATFQKQFHGVEKKQLPHLLCITNLMLHGIE------VPS 249

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L       +   +NPPFG     ++D +EK           P   +  +
Sbjct: 250 QIKHDNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PAEMQTRE 297

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L+ P N  GRA +VL    LF    G G +++I++ L E   +  IV 
Sbjct: 298 TADLFLQLIIEVLD-PAN--GRAGVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 350

Query: 393 LPTDLF-----FRTNI 403
           LP  +F      +TNI
Sbjct: 351 LPNGVFNPYTGIKTNI 366


>gi|119357510|ref|YP_912154.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354859|gb|ABL65730.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 662

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 126/289 (43%), Gaps = 40/289 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ K  S I   P ++       IYE+ +  F     +G  +F TP  +V L T ++
Sbjct: 140 LLKQLLKKVSEI---PSSMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPVSIVRLLTEVI 196

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHGQELEP 249
                      P   R L DP CG+GG    +   VA     HK  P   L  HG E   
Sbjct: 197 ----------EPYHGRIL-DPACGSGGMFVSSARFVA----QHKQNPSAELSIHGIEKTD 241

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           ET  +C   + +  LE   R     N+        D  TG  F + L+NPPF      + 
Sbjct: 242 ETGRLCRLNLAVHGLEG--RIMHGGNVNSYYDDPHDA-TGN-FDFVLANPPF------NV 291

Query: 310 DAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           +AV+KE     +G   RF  GLP+  + + L++    + L    N  GRA  V+++S   
Sbjct: 292 NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL----NERGRAGFVMANSA-- 345

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              A S E EIRR L+E+  ++ +VA+  ++F+   +   LW     K 
Sbjct: 346 -SDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKA 393


>gi|291485260|dbj|BAI86335.1| hypothetical protein BSNT_04128 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 476

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 60/338 (17%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D S++IA  +    L KI K+   ++ +     +  + N+YE L+ +  SE   GA  + 
Sbjct: 91  DASTSIAEPKN---LEKIIKSIDALDWY--NAKEEGLGNLYEGLLEKNASEKKSGAGQYF 145

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIP 237
           TPR ++ +   L+           P +     DP  GT GF+  A  ++ +    +  I 
Sbjct: 146 TPRVLIDVMVQLI----------DPKIGERCADPAAGTFGFMIAADQYLKNQTDDYFDIE 195

Query: 238 PILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           P            G EL  +TH + +   L+  +E          ++QG TLS +    K
Sbjct: 196 PQEAEFQKKEAFVGMELVKDTHRLALMNALLHNIEG--------RLEQGDTLSGNGKWMK 247

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L+NPPFG K            K GE         + S+  + FL  + N L+   
Sbjct: 248 NFDVILTNPPFGTK------------KGGERVSRDDLTFETSNKQLNFLQLIYNALK--D 293

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +G  RAA++L  + LF    G   S+IRR L+    +  I+ LPT +F+   + T +   
Sbjct: 294 DGNARAAVILPDNVLFESGIG---SQIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFF 350

Query: 411 SNRKTEERRGKVQLINATDLW-----TSIRNEGKKRRI 443
           +       RG     N  D+W     T++ + GK+ ++
Sbjct: 351 T-------RGTTDQDNTKDVWVYDLRTNMTSFGKRNQL 381


>gi|193212615|ref|YP_001998568.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327]
 gi|193086092|gb|ACF11368.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327]
          Length = 488

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 133/287 (46%), Gaps = 49/287 (17%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           K+G L +   N    ++  +T  DR + ++IYE L+    S  + G  ++ TPR V    
Sbjct: 118 KSGTLLRQVINIIEEDVDFNTSGDRHLFNDIYEKLLADLQSAGNAG--EYFTPRAVTQFM 175

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VADCGSHHKIPPILVPH 243
             +L           P +  +L DP CGTGGFLT A+ H    V       KI   L  H
Sbjct: 176 VDML----------DPQLGESLLDPACGTGGFLTCAIEHLNEQVKTVDDREKIQESL--H 223

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPP 300
           G E +P  H + V  M++  +      D+  NI+  +TLS   KD     R    ++NPP
Sbjct: 224 GVEKKPLPHMLAVTNMMLHGI------DVPTNIRHDNTLSRPLKDYSPKDRVDLIITNPP 277

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     ++D +EK        R      + +D  M  +MHL     L P+  G+AA+VL
Sbjct: 278 FGG---MEEDGIEKNFPRQYQTR------ETADLFMALIMHL-----LKPD-TGKAAVVL 322

Query: 361 SSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
               LF    G G ++ +++ LLE+  +  IV LP  +F   T+IAT
Sbjct: 323 PDGFLF----GEGVKTTLKKELLESFDLHTIVRLPKGVFSPYTSIAT 365


>gi|134302158|ref|YP_001122127.1| N-6 DNA methylase family [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049935|gb|ABO47006.1| N-6 DNA Methylase family [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 482

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGIT------ 258

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 259 -SPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 302

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 303 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 356

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 357 HTIVSLPAGVFL 368


>gi|56708241|ref|YP_170137.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670712|ref|YP_667269.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56604733|emb|CAG45804.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321045|emb|CAL09187.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 488

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 162 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 210

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 211 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 263

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 264 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 308

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 309 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 362

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 363 HTIVSLPAGVFL 374


>gi|289433646|ref|YP_003463518.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289169890|emb|CBH26430.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 858

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 157/386 (40%), Gaps = 65/386 (16%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGL---LYKICKNFSG-IELHPD 148
           ++ NN E  I+   D+     +DF   FSS+   L    L   L +  KN    IEL  D
Sbjct: 114 DSLNNFERTISVSGDS-----DDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQD 168

Query: 149 T-----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+ + YE+LI +F  E  + A +F TPR V  +          A      
Sbjct: 169 LNMVALQKSDVLGDAYEYLIGQFAMESGKKAGEFYTPRQVSEVM---------AQIAAKT 219

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I ++YDPT G+G  L     H+ +      +   L  +GQE    T+ +    +L+  
Sbjct: 220 SNITSIYDPTVGSGSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHG 274

Query: 264 LESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFG-KKWEKDKDAVEKE 315
           +     R    +++ G TLS+D          G  F   + NPP+    W K    V   
Sbjct: 275 V-----RPEKMSVKNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDP 329

Query: 316 HKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                  RF     LP  S G   FL+H    L       G  AIVL    LF G     
Sbjct: 330 -------RFEIAGVLPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRG---GT 375

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E EIR+ LL  + I+ I+ LP +LF  T I   + IL   +T      V +I+A+  +  
Sbjct: 376 EGEIRKRLLNKNYIDTIIGLPGNLFTNTGIPVCVLILKKNRT--ISDPVLVIDASRNFIK 433

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSR 459
           +     K+ ++ +    +I+D YV R
Sbjct: 434 V----GKQNVLQEKDIARIVDTYVER 455


>gi|126665697|ref|ZP_01736678.1| type I restriction-modification system methylation subunit
           [Marinobacter sp. ELB17]
 gi|126629631|gb|EBA00248.1| type I restriction-modification system methylation subunit
           [Marinobacter sp. ELB17]
          Length = 570

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 71/335 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 202 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYSGR-VYDPA 250

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +    S            +  +GQE  P T  +    M IR +    
Sbjct: 251 MGSGGFFVSSDKFIEQHASEQHYDAAEQKKHISVYGQESNPTTWKLAAMNMAIRGI---- 306

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D +   +   T   D     R  + ++NPPF  + W  +           E  R+  G
Sbjct: 307 --DFNFGKKNADTFLDDQHPDLRADFVMANPPFNIRDWWNESLT--------EDARWKYG 356

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+ +   L P G    A++LS+  + +    + E EIR+ L+E DL+
Sbjct: 357 TPPKGNANFGWLQHMLH--HLAPTGS--MALLLSNGSMSSNT--NNEGEIRKRLVEEDLV 410

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           E +VALP  LF  T I   +W L+  K                  +IRNE K+ R     
Sbjct: 411 ECMVALPGQLFTNTQIPACIWFLTKDKAN---------------GAIRNEKKRGR----- 450

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            ++++L              +D R  G+ R +VLR
Sbjct: 451 -QKELL-------------FIDARNLGFMRDRVLR 471


>gi|254831874|ref|ZP_05236529.1| N-6 DNA methylase [Listeria monocytogenes 10403S]
          Length = 539

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 176/372 (47%), Gaps = 41/372 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S I+E++I+ +  +      ++ TP  V  + + +L+  D+      P  ++  YDP+ G
Sbjct: 181 STIFEYMIKDYNKDGGGKYAEYYTPHSVAKIMSEILIGDDE------PKSVKA-YDPSAG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G+       +  + Q++  ++  +    +++  L          N
Sbjct: 234 SGTLL---MNVASKIGTDK-----VSIYSQDISQKSSNLLRLNLILNNLSHSIN-----N 280

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+ ++    K+  Y +SNPPF   + + ++ +    +  E  RF  G+P I + +
Sbjct: 281 IVQGNTIIENRHADKKMDYIVSNPPFKLDFSEWREQITTLPEFTE--RFFAGVPNIPNSA 338

Query: 336 -------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                  +LF+ H+   L    N  G+AA+V+ +  +    A SG E +IR+ L++N  +
Sbjct: 339 KDKMAIYLLFIQHIIYSL----NNTGKAAVVVPTGFI---TAQSGIEKKIRKHLIDNRWL 391

Query: 388 EAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           + +V++P+++F  T    + ++I     T++   KV L++A+ L T +++   ++ +++ 
Sbjct: 392 KGVVSMPSNIFATTGTNVSVIFIDKTNNTDD--AKVVLVDASKLGTKVKDGKSQKTLLSS 449

Query: 447 DQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  +QI+  +  +E    FS  + Y     ++  +         ++   L + E +   +
Sbjct: 450 EDEKQIIQAFQMQEARDDFSVTVTYNEIKEKKYSLSASQYFDVKIEYVELTQEEFNNQMK 509

Query: 506 KLSPLHQSFWLD 517
           K     QS +L+
Sbjct: 510 KFQCTLQSLFLE 521


>gi|326406200|gb|ADZ63271.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. lactis CV56]
          Length = 859

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 171/400 (42%), Gaps = 69/400 (17%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGL---LYKI 136
           NT ++ +  +  T++ N+ E  IA   ++A     DF   FSS+   L    L   L + 
Sbjct: 103 NTGDFEVQKV--TDSLNSFEKTIAVTGESA-----DFKGLFSSSTLDLTDTALGSNLNER 155

Query: 137 CKNFSG-IELHPDT-----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            KN    I L  D          V+ + YE+LI +F  E  + A +F TPR V  +   +
Sbjct: 156 SKNIKALINLFADLDMVALQKSDVLGDAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQI 215

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +    +         I+++YDPT G+G  L     H++      ++   L  +GQE    
Sbjct: 216 VAKTSN---------IQSIYDPTVGSGSLLLTVGKHLS-----KEVQKDLSYYGQEKNTA 261

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFG- 302
           T+ +    +L+  +     R     ++   TLS D          G +F   + NPP+  
Sbjct: 262 TYNLTRMNLLLHGV-----RPEKMTVRNADTLSHDWPEDPSRPNVGVQFDAVVMNPPYSL 316

Query: 303 KKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           K W K    +          RF     LP  S G   FL+H      L  NG    AIVL
Sbjct: 317 KDWNKAGLKISDP-------RFEIAGTLPPDSKGDFAFLLH--GLFHLGTNG--TMAIVL 365

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNRKTEERR 419
               LF  R GS E +IR+ LL+ + I+ I+ LP+ +F  T I   + IL  NR   E  
Sbjct: 366 PHGVLF--RGGS-EGDIRQRLLDKNQIDTIIGLPSGMFTNTGIPVIVMILKKNRPVGE-- 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             V +I+A+  +  +     K+ ++ +    +I+D Y SR
Sbjct: 421 -PVLVIDASRSFIKV----GKQNVLQEKDIAKIVDTYSSR 455


>gi|224457359|ref|ZP_03665832.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159467|gb|ADA78858.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 482

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGIT------ 258

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 259 -SPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 302

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 303 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 356

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 357 HTIVSLPAGVFL 368


>gi|254370728|ref|ZP_04986733.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875062|ref|ZP_05247772.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151568971|gb|EDN34625.1| hypothetical protein FTBG_00529 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841061|gb|EET19497.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 487

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 161 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 209

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 210 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 262

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 263 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 307

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 308 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 361

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 362 HTIVSLPAGVFL 373


>gi|3581984|emb|CAA09337.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 396

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 170/425 (40%), Gaps = 65/425 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A L   IW  A ++ G     DF + +L     R         +E    +V  +Y     
Sbjct: 8   AELHRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSV--QYAGMAD 65

Query: 65  SNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-----------ESYIASFSDN 110
           S+I  E     V+  GY F   S+   +     NT ++L           ES  + +   
Sbjct: 66  SDIGDEIKDDAVRTKGY-FIAPSQLFCNVANGANTNDHLNADLNSIFVAIESSASGYPSE 124

Query: 111 A--KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
           A  K +F DFD +S   RL     EK   L  + K   G+ L   D     +  + YE L
Sbjct: 125 ADIKGLFADFDTTSN--RLGSTVKEKNIRLAAVLKGVEGLALGDFDAHQIDLFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L  
Sbjct: 183 ISNYAANGGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H      +H I       GQE+   T  +    M +  +  D       +I+ G+TL
Sbjct: 235 AKKHF----DNHIIEDGFF--GQEINHTTFNLARMNMFLHNINYDKF-----DIRLGNTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
               F  ++ F   +SNPP+  KW    D      +     RF P   L   S     F+
Sbjct: 284 LAPEFKDEKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  N L    +  GRA IV      + G A   E +IR++L++++ +E +++L  +LFF
Sbjct: 339 LHALNYL----SAKGRAPIVCFPGIFYRGGA---EQKIRKYLVDSNYVETVISLAPNLFF 391

Query: 400 RTNIA 404
            T IA
Sbjct: 392 GTTIA 396


>gi|118497742|ref|YP_898792.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella tularensis subsp.
           novicida U112]
 gi|194323713|ref|ZP_03057489.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
 gi|118423648|gb|ABK90038.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella novicida U112]
 gi|194322077|gb|EDX19559.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
          Length = 482

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQVYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 257

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 258 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 302

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 303 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 356

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 357 HTIVSLPAGVFL 368


>gi|212703156|ref|ZP_03311284.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098]
 gi|212673422|gb|EEB33905.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098]
          Length = 517

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 136/316 (43%), Gaps = 46/316 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR +V L  A+L           P   R + DP 
Sbjct: 159 VLGHVFEYFLGEFALAEGKKGGQFYTPRSIVELLVAML----------EPFRGRVM-DPC 207

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H  +   L  +GQE    T  +    + IR ++S   + L 
Sbjct: 208 CGSGGMFVQSEQFVRE---HQGMLEDLSLYGQESNQTTWRLAKMNLAIRAIDSS--QVLW 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKD---KDAVEKEHKNGELGRFGPGLP 329
            N  +GS L  D     R  Y L+NPPF    W  D    DA           R+  G+P
Sbjct: 263 NN--EGSFL-HDAHPDVRVEYILANPPFNDSDWSGDLLQNDA-----------RWQYGVP 308

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              + +  ++ H  + L    +  G+A +VL+   L +   G G+   RR + E +L++ 
Sbjct: 309 PAGNANFAWMQHFIHHL----SPRGQAGVVLAKGSLTSKTNGEGDIR-RRMIEEGNLVDC 363

Query: 390 IVALPTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           IV LP  LF  T I   LW L+    N    +R G++  I+A ++   I    ++ RI+ 
Sbjct: 364 IVNLPAKLFLNTQIPACLWFLARDRKNGPFRDRSGEILFIDARNMGQLIN---RRTRILT 420

Query: 446 DDQRRQILDIYVSREN 461
            +    I + Y +  N
Sbjct: 421 AEDIATISNAYHNWRN 436


>gi|167912941|ref|ZP_02500032.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 112]
          Length = 536

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 132/517 (25%), Positives = 209/517 (40%), Gaps = 98/517 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECALE------- 49
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E A +       
Sbjct: 1   MTEF--EKQQLGKILWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGPDY 58

Query: 50  PTR---SAVREKYLAFGGSNIDLESFVKVAGYSFY-----------------NTSEYSLS 89
           PT+   S      L + G+  D+  F K      +                   S+Y L 
Sbjct: 59  PTQLDSSVSTPLQLWYEGNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAQMAREQSKYLLD 118

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI---------ARLEKAGLLYKICKNF 140
           TL         ES+ ++F    + +F + + +S           ARL K  ++ +I K  
Sbjct: 119 TLQKGFGYIETESFASTF----RGLFSEINLTSDKLGKNYDERNARLCK--IINEIAKGL 172

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALF 199
           +      DT+ D      YE+LI +F +   + A +F TP+ +  + +A++ LD  +   
Sbjct: 173 TQFSTDSDTLGD-----AYEYLIGQFAAGSGKKAGEFYTPQRISSILSAIVTLDGQEPAT 227

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
            +   M   L D  CG+G  L +  + +      H I  I   +GQE    T+ +    M
Sbjct: 228 GQRKHMDSVL-DFACGSGSLLLNVRHRMGP----HGIGKI---YGQEKNITTYNLARMNM 279

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK--DLFTGK------RFHYCLSNPPFGKKWEKDKDA 311
           L+  +     +D    I  G TL    D+          +F   ++NPPF  +WE  +  
Sbjct: 280 LLHGV-----KDSEFEIFHGDTLLNEWDMLRETNPAKIPKFDAVVANPPFSYRWESTEAL 334

Query: 312 VEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                  GE  RF   GL   S     FL+H  + L+      G  AI+L    LF G  
Sbjct: 335 -------GEDVRFKNYGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGV 383

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              E+ IR  LL++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + 
Sbjct: 384 ---EARIRTKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEH 437

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
           +     +GK++  +  +   +I+D Y  R E  ++SR
Sbjct: 438 F----EKGKRQNQLLPEHINKIIDTYQFRKEEARYSR 470


>gi|157157373|ref|YP_001461440.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157079403|gb|ABV19111.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 569

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 42/285 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 205 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYNGR-VYDPA 253

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   + +     +         +  +GQE  P T  +    M IR +    
Sbjct: 254 MGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQESNPTTWKLAAMNMAIRGI---- 309

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D +   +   TL  D     R  + ++NPPF  K+W   K  +E +       R+  G
Sbjct: 310 --DFNFGSKNADTLLDDQHPDLRADFVMANPPFNMKEWWNAK--LENDV------RWKYG 359

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G    A++L++  + +    + E EIRR L++ DL+
Sbjct: 360 TPPQGNANFAWMQHMIH--HLAPKGS--MALLLANGSMSSNT--NNEGEIRRNLIKADLV 413

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQLINA 427
           E +VALP  LF  T I   +W L+  K+       R+G+V  I+A
Sbjct: 414 ECMVALPGQLFTNTQIPACIWFLTKDKSSGNGKAHRKGEVLFIDA 458


>gi|208779806|ref|ZP_03247150.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
 gi|208744261|gb|EDZ90561.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
          Length = 461

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 135 LSQVYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 183

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 184 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 236

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 237 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 281

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 282 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 335

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 336 HTIVSLPAGVFL 347


>gi|332184236|gb|AEE26490.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida 3523]
          Length = 482

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQVYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 257

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 258 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 302

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 303 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 356

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 357 HTIVSLPAGVFL 368


>gi|332678455|gb|AEE87584.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella cf. novicida Fx1]
          Length = 461

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 135 LSQVYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 183

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 184 GTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 236

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 237 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 281

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 282 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 335

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 336 HTIVSLPAGVFL 347


>gi|197336572|ref|YP_002157415.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
 gi|197315275|gb|ACH64723.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
          Length = 515

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 137/304 (45%), Gaps = 40/304 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+   YE  + +F       A  F TP  +V     ++          +P   + LY+P 
Sbjct: 160 VLGQAYEFFLGKFALAEGASAGAFYTPESIVSTIVEVI----------APTKGQ-LYEPA 208

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GG +  +   +   G       +   +GQE    T  +    + IR L+ D  +   
Sbjct: 209 IGSGGMVVCSEKFMERNGGERGDISV---YGQEYTHTTWKMAAMNLTIRGLDFDLGK--- 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +   TL  DL    R  Y ++NPPF + KW   K A       G++ R+  G P  S
Sbjct: 263 ---ENADTLLNDLHKDLRADYIMANPPFNQEKWGAAKVA-------GDV-RWKWGQPSDS 311

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+   L    N  GRA +V+++  + +    + E  IR+ ++E+DL+E +VA
Sbjct: 312 NANYAWIQHMLYHL----NETGRAGVVMANGAMTS--TANNEDAIRKAIIEDDLVECMVA 365

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF  T I + ++  +  K ++R+G+   I+A  L    R E + + + +++   +I
Sbjct: 366 LPPKLFINTQIPSCIFFFN--KNKKRKGETLFIDARHLG---RLESRAQLVFDEEHIMEI 420

Query: 453 LDIY 456
            + Y
Sbjct: 421 ANTY 424


>gi|327330728|gb|EGE72474.1| type I restriction-modification system, M subunit
           [Propionibacterium acnes HL097PA1]
          Length = 522

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 163/363 (44%), Gaps = 62/363 (17%)

Query: 112 KAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIR 164
           K +F D D +S     T+A+  +   L K+      + L    D   D +  + YE+L++
Sbjct: 135 KGLFADLDVNSPRLGATVAQRNRK--LVKVLDAIGDLPLGSFEDNSID-LFGDAYEYLMQ 191

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S+  +   ++ TP++V  +   + +     + K        +YDP  G+G  L    
Sbjct: 192 MYASQAGKSGGEYFTPQEVSEVLARIAVGDKKRIGK--------VYDPAVGSGSLLL--- 240

Query: 225 NHVADCGSHHKIPPILVP------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                     K   +L P      +GQE+   T+ +    M +  +  +       +I  
Sbjct: 241 ----------KFAKLLGPENVKGFYGQEINLTTYNLARINMFLHGINYE-----QFDIVL 285

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           G TL+  +   K  F   +SNPP+  KWE  D   +  + +    G   P     S   +
Sbjct: 286 GDTLTNPMHRDKEPFEAIVSNPPYSTKWEGSDNPLLINDDRYAPAGVLAPK----SKADL 341

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L       G AA+V     L+  R G+ E +IR++L++N+ ++ ++ LP D
Sbjct: 342 AFTMHILSSLAT----NGTAAVVEFPGVLY--RVGA-ERKIRKYLIDNNYVDTVIQLPPD 394

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IAT + +L   K  ++   V  ++A+  ++ +   G K ++++ +Q R I+++ 
Sbjct: 395 LFFGTTIATCVIVL---KKSKKDNSVLFVDASAEFSRV---GNKNKLLSANQDR-IVELV 447

Query: 457 VSR 459
            +R
Sbjct: 448 SAR 450


>gi|312114646|ref|YP_004012242.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219775|gb|ADP71143.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 518

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 35/293 (11%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+ +  F S   +   ++ TP  +V L   ++     A+            DP CG+G
Sbjct: 149 IFEYFMGEFASSFMQKGGEYFTPASIVKLIVEVIEPFHGAIL-----------DPACGSG 197

Query: 218 GFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G    +   V     HHK P   +   G E   +T  +C   + +  L  D R   S   
Sbjct: 198 GMFVHSAEFVR---RHHKAPASEIAVFGVEKMSDTLRLCRMNLAVHGLSGDIREANSYYD 254

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                + K       F + ++NPPF +     K  V    K     RF  GLP +++ + 
Sbjct: 255 DPHKLIGK-------FDFVMANPPFNQPEVDQKRLVNDAGKVD--ARFPLGLPSVNNANY 305

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L++      L    N  GRA  V+++S      AG  E EIRR L+++  ++ IVA+  +
Sbjct: 306 LWINQFFAAL----NATGRAGFVMANSA---SDAGGSEREIRRKLIDSGAVDCIVAVGPN 358

Query: 397 LFFRTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +F+   +   LW L   K T +R  +V  I+A  L+   R E +  R+ + + 
Sbjct: 359 MFYTVTLPVTLWFLDKGKATGKRADEVLFIDARHLF---RQETRAHRVFDPEH 408


>gi|169825229|ref|YP_001692840.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
 gi|167832034|dbj|BAG08950.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
          Length = 579

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 145/342 (42%), Gaps = 53/342 (15%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  LL  I + F  I   P+     +   IYE+ +  F     +    F TP  VV   
Sbjct: 135 EEPELLSNIVRIFKDI---PENSTIDIFGEIYEYFLGNFALAEGKDGGTFYTPATVVRYM 191

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L           PG  + L DP CG+GG    A  ++ +  +          +G E 
Sbjct: 192 VEVL--------NPQPGEKKFL-DPACGSGGMFVQAARYMHNHNASESEQMKFRCYGVEK 242

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWE 306
           EP+T  +    +L+  +  D        I + ++   D +    +F Y ++NPPF     
Sbjct: 243 EPDTVKLAKMNLLLNNVRGD--------ITEANSFYSDPYNAYGQFDYVMANPPFNV--- 291

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---------------ISDGSMLFLMHLANKLELPPN 351
            D+  VEK   +     +G  +P+               + + + L++ + A  L    N
Sbjct: 292 -DEVVVEKVSDDNRFNTYG--VPRNKSKSKKKKSDKKETVPNANYLWIGYFATAL----N 344

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA+V+++S      A   E +IR+ ++E  +I  +V LP+++F    +   LW   
Sbjct: 345 EKGKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTLPSNMFSSVTLPATLWFFD 401

Query: 412 NRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            +K   +++ ++  I+A +++T +    +  R  +D+Q + +
Sbjct: 402 KQKPNTDKKNEILFIDARNVFTQV---DRAHRKFSDEQIKNL 440


>gi|15603402|ref|NP_246476.1| hypothetical protein PM1537 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721926|gb|AAK03621.1| HsdM [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 568

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 56/297 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +   ++ TP+ +V+L   +L           P   R ++DP 
Sbjct: 201 ILGHVYEYFLGKFALAEGKNGGEYYTPKSIVNLIVEML----------QPYQGR-VFDPA 249

Query: 214 CGTGGFLTD---------AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            G+GGF               H A      +I      +GQE    T  + V  M+IR +
Sbjct: 250 MGSGGFFVSNDKFIETHAKEKHYASDEQRRRISI----YGQESTSTTWKLAVMNMVIRGI 305

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELG 322
                 D +   +   + ++D     R  + ++NPPF K   W +       EH      
Sbjct: 306 ------DFNFGKKHADSFTEDQHPDLRADFVMANPPFNKDDWWHE-----SLEHD----A 350

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  G P + + +  ++ H+     L P G    A++L++  + +   G GE  IR+ L+
Sbjct: 351 RWQYGTPPVGNANFAWVQHML--YHLAPTGS--MALLLANGSMSSNTGGEGE--IRKRLI 404

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           + D++E +V+LP  LF  T I   +W L+         ++K   R G+V  I+A  L
Sbjct: 405 DEDVVECMVSLPDKLFTNTRIPACIWFLTKDKKNGVSFDKKKRNRSGEVLFIDARQL 461


>gi|269976584|ref|ZP_06183569.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris
           28-1]
 gi|269935385|gb|EEZ91934.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris
           28-1]
          Length = 469

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 160/392 (40%), Gaps = 62/392 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L KI K+   ++    T  +  + N+YE L+ +  +E   GA  + TPR        +L+
Sbjct: 102 LEKIIKSIDALDWF--TAREEGLGNLYEGLLEKNANEKKSGAGQYFTPR--------VLI 151

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKIPPILVP 242
           D    L K  PG +    DP CGT GF+  A ++V +            +H +I      
Sbjct: 152 DVMVRLTKPQPGEL--CNDPACGTFGFMIAAFDYVREHTDKFFDLNQDEAHFEIQKAFT- 208

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G EL  +TH + +   ++  +E+         I  G TLS      K F   L+NPPFG
Sbjct: 209 -GVELVHDTHRLALMNAMLHSIEAP--------ITLGDTLSPLGKHLKNFDVVLTNPPFG 259

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K            K GE           S+  + FL H+   L+     GGRAA+VL  
Sbjct: 260 TK------------KGGERATRDDLTFPTSNKQLNFLQHIYRSLK----SGGRAAVVLPD 303

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           + LF   A      IR+  ++   +  I+ LPT +F+   + T +      KT+  +G  
Sbjct: 304 NVLF---ADGDGKRIRQDFMDKCNVHTILRLPTGIFYAQGVKTNVLFFQRGKTD--KGNT 358

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           + +   DL T++ + GK+  +     R    D   + E      + D R   Y R ++  
Sbjct: 359 KRVWYYDLRTNMPSFGKRTPLT----REHFTDFETAYEAENREAVNDERWSSYSREEIAT 414

Query: 483 PLRMSFILDKTGLARLEAD-ITWRKLSPLHQS 513
                  LD  GL + E + I W    P  Q+
Sbjct: 415 K---EDTLD-LGLMKQETETIDWNNYDPAEQA 442


>gi|149369905|ref|ZP_01889756.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49]
 gi|149356396|gb|EDM44952.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49]
          Length = 541

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 153/318 (48%), Gaps = 47/318 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + I+E+LI+ + S       ++ TP  V  +  A L+  DD           T YDP+ G
Sbjct: 182 ATIFEYLIKDYNSNSGGKYAEYFTPHAVAKIMAACLVTGDDV-------NNVTCYDPSAG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN     G           + Q++  ++ A+    +++  L    +     N
Sbjct: 235 SGTLL---MNIAHAIGEDK-----CTIYSQDISQKSSALLRLNLILNNLVHSIQ-----N 281

Query: 276 IQQGSTL-----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           I QG+T+      +D    ++F Y +SNPPF   +  D  A      N E  RF  G+PK
Sbjct: 282 IIQGNTILNPYHKQDNGQLEQFDYIVSNPPFKLDFS-DYSADLDSKANKE--RFFAGIPK 338

Query: 331 I---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLL 382
           +      SM    LF+ H+ + L       G+AAIV+ +  +    A SG + +IR+ L+
Sbjct: 339 VPAKKKDSMAIYLLFIQHIMHSL----TAKGKAAIVVPTGFI---TAQSGIDKKIRQKLV 391

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+ ++  +V++P+++F  T     +  L    T++    V L++A++L T +++   ++ 
Sbjct: 392 ESKMLAGVVSMPSNIFATTGTNVSILFLDKTNTKD----VVLVDASNLGTKVKDGKNQKT 447

Query: 443 IINDDQRRQILDIYVSRE 460
           +++ ++ +QI++++ ++E
Sbjct: 448 VLSPEEEQQIINVFNAKE 465


>gi|254414483|ref|ZP_05028249.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178713|gb|EDX73711.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 396

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 39/233 (16%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           ++DP CG GG    +   +A      +I  I + +GQE    T+ +C   + IR ++   
Sbjct: 9   VFDPCCGLGGMFVQSEKFIA--AHQGRIDDISI-YGQESNETTYKLCRMNLAIRWIDG-- 63

Query: 269 RRDLSKNIQ---QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL---- 321
                 NI+   +GS L+ D     +  + ++NPPF      D D        GEL    
Sbjct: 64  -----SNIKWNPEGSFLN-DAHKDLKADFVIANPPF-----NDSDW------GGELLRKD 106

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           GR+  G+P + + +  ++ H      L P G   A  VLS+  L     G GE  IR+ L
Sbjct: 107 GRWRYGVPPVGNANFAWVQHFL--YHLAPTGA--AGFVLSNGSLSLNTGGEGE--IRQAL 160

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILS----NRKTEERRGKVQLINATDL 430
           +E DL++ IV LPT LF+ T I   LW LS      K   R+G+V  I+A++L
Sbjct: 161 VEADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRNRQGEVLFIDASEL 213


>gi|312278102|gb|ADQ62759.1| Putative HsdM [Streptococcus thermophilus ND03]
          Length = 534

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 186/392 (47%), Gaps = 48/392 (12%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY T E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   N
Sbjct: 104 FYETFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKAIIN 160

Query: 140 FSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
                   +T+  +     S ++E++I+ +  +      ++ TP  V  +   +L+  D 
Sbjct: 161 LLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND- 219

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  +  
Sbjct: 220 -----QPSNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLR 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +++  L+         NI QG+T+  +    ++  Y +SNPPF   + + +D VE   
Sbjct: 266 LNLILNGLQHSIH-----NIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETLP 319

Query: 317 KNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +  E  RF  G+PK+   S        LF+ H+     L P   G+AA+VL +  +    
Sbjct: 320 EASE--RFFAGVPKVPAKSKDKMAIYELFVQHII--YSLKPE--GQAAVVLPTGFI---T 370

Query: 370 AGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           A SG + +IR+ L++N ++  +V++P+++F  T     +  +  +     +G V LI+A+
Sbjct: 371 AQSGIDKKIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDAS 426

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +L T ++    ++ +++ ++ ++I++ ++ +E
Sbjct: 427 NLGTKVKEGKNQKTVLSPEEEQKIVETFIKKE 458


>gi|163748971|ref|ZP_02156222.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella
           benthica KT99]
 gi|161331347|gb|EDQ02235.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella
           benthica KT99]
          Length = 495

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 48/317 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +        S     ++   LL ++    + I+   ++    +  ++Y
Sbjct: 90  LKNLYAPLDINPRGFVVKEALSDAFNYMKNGTLLRQVINKLNDIDF-TNSEERHLFGDLY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR +    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAI----TRFIVDRID------PKLGESILDPACGTGGF 196

Query: 220 LTDAMNHVAD--CGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           L  + +HV +    ++    PIL    HG E +   H +C   ML+  +E      +   
Sbjct: 197 LACSFDHVKNNYIKNNTTDLPILQRQIHGVEKKQLPHLLCTTNMLLHGIE------VPTQ 250

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+ G+TLSK L +    +   ++NPPFG     ++D +EK           P   +  + 
Sbjct: 251 IKHGNTLSKPLSSWDDEYDIIVTNPPFGG---TEEDGIEKNF---------PTEYRTRET 298

Query: 335 SMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIV 391
           + LFL  +   L+ P  G  GGRAA+VL    LF    G G +++I++ L E   +  IV
Sbjct: 299 ADLFLQLIIEVLKEPSAGKEGGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIV 354

Query: 392 ALPTDLF-----FRTNI 403
            LP  +F      +TNI
Sbjct: 355 RLPNGVFAPYTSIKTNI 371


>gi|226225491|ref|YP_002759597.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
 gi|226088682|dbj|BAH37127.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
          Length = 538

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 207/509 (40%), Gaps = 74/509 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MTE   +   L N +WK A+DL G     DF   +L F  LR L    E   R  + + Y
Sbjct: 1   MTE--ANQKQLGNTLWKIADDLRGAMDADDFRDYMLSFLFLRYLSDNYEAAARKELGKDY 58

Query: 60  LAFGG-------------SNIDLESFVKVAGYSFYNTSE-----YSLSTLGSTNTRNNLE 101
              GG             +  D+  F K      +   +      S++++  T   + L+
Sbjct: 59  PDTGGDARKVPLELWYANNRDDIPEFEKQMRRKVHYVIKPAHLWNSVASMARTQNEDLLK 118

Query: 102 S------YIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           +      YI   SF    + +F + D  S       A    K+C     I   L+  +  
Sbjct: 119 TLQEGFKYIETESFESTFQGLFSEIDLGSPKLGKTYADRNAKLCTVIQKIAEGLNNFSAD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++          +   +  + D
Sbjct: 179 VDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLENVMD 238

Query: 212 PTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
             CG+G  L +    V+   G+  +I       GQE    T+ +    ML+  +     +
Sbjct: 239 FACGSGSLLLNVRKRVSQADGTIGRI------FGQEKNITTYNLARMNMLLHGV-----K 287

Query: 271 DLSKNIQQGSTLS------KDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           D    I  G TL       ++L   ++  F   ++NPPF  +W+  +         G+  
Sbjct: 288 DTEFEIFHGDTLLNEWDMLRELNPARKPLFDAIVANPPFSYRWDPGESI-------GDDV 340

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR  L
Sbjct: 341 RFKSHGLAPKSAADFAFLLHGFHYLK----DEGVMAIILPHGVLFRGGA---EERIRTKL 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA   +     +GK++
Sbjct: 394 LKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAAHF----EKGKRQ 446

Query: 442 RIINDDQRRQILDIYVSR-ENGKFSRMLD 469
             +  +   +I+D Y  R E  ++SR ++
Sbjct: 447 NQLKPEHIGKIIDTYQHRTEAPRYSRRVE 475


>gi|148976555|ref|ZP_01813251.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3]
 gi|145964131|gb|EDK29388.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3]
          Length = 542

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 148/310 (47%), Gaps = 42/310 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPTCG 215
           I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G I  +  YDP+ G
Sbjct: 184 IFEYLIKDYNSNSGGKYAEYYTPHAVARIMANILV-PE-----EQQGKISNVSCYDPSAG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +  + + +         I       L        +   +   +E D  R    +
Sbjct: 238 SGTLLMNVAHAIGESRCSIFTQDISKKSSNLLRLNLILNNLVHSIPNVIEGDTMR--HPH 295

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDG 334
            + G+ L       K+F Y +SNPPF   + +  + +E KEHK     RF  G+PK+   
Sbjct: 296 HKDGAAL-------KQFDYIVSNPPFKLDFSEIHEELEGKEHKK----RFFAGVPKVPAK 344

Query: 335 S-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +        LFL H+ + L+      G+AA+V+ +  +    A S + +IR+ L++N ++
Sbjct: 345 AKDKMAIYQLFLQHIIHSLK----ENGKAAVVVPTGFI---TAKSIDMKIRKHLIDNKML 397

Query: 388 EAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
             +V++P+++F  T    + L+I +  K     G V L++A++L T I+    ++ +++D
Sbjct: 398 AGVVSMPSNIFATTGTNVSILFIDACNK-----GDVVLVDASNLGTKIKEGKNQKTVLSD 452

Query: 447 DQRRQILDIY 456
            + +QI++++
Sbjct: 453 LEEQQIIEVF 462


>gi|126176533|ref|YP_001052682.1| N-6 DNA methylase [Shewanella baltica OS155]
 gi|125999738|gb|ABN63813.1| N-6 DNA methylase [Shewanella baltica OS155]
          Length = 565

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 46/292 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE+ + +F  + +    +F TP  +V L    +++PD             ++DP 
Sbjct: 155 IFGRIYEYFLTQFADQGAHDGGEFFTPVSLVQLLVN-VIEPDHG----------KIFDPA 203

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    + + +A    H + P  L  +G E    T  +    + +  LE        
Sbjct: 204 CGSGGMFVQSAHFMA---RHAQDPHELTFYGHEKNRVTTRLAKMNLAVHGLEG------- 253

Query: 274 KNIQQGS---TLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            N++ G    T   D   G      Y ++NPPF      + D V+ +   G+  R   GL
Sbjct: 254 -NVEGGESAITYYNDPHEGLFGTVDYVMANPPF------NVDEVDADKIKGDKHRLPFGL 306

Query: 329 P------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           P      K+S+G+ L++ +  + L    N  GRA  V+SS       AG  E+++R  L+
Sbjct: 307 PGVNKNKKVSNGNYLWIQYFYSYL----NDTGRAGFVMSSQA---SSAGRDEAKVREQLV 359

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           +   ++ ++ + ++ F+   +   LW L+  K    + KV +++A +++  +
Sbjct: 360 KTGDVDIMIDIRSNFFYTRTVPCQLWFLNKNKPAHLKDKVLMLDARNVYRKV 411


>gi|254786393|ref|YP_003073822.1| type I restriction-modification system, M subunit [Teredinibacter
           turnerae T7901]
 gi|237686117|gb|ACR13381.1| type I restriction-modification system, M subunit [Teredinibacter
           turnerae T7901]
          Length = 535

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 118/499 (23%), Positives = 197/499 (39%), Gaps = 78/499 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-------------PTRSAVR 56
            L   +W  A+ L G     DF   +L F  LR L    E             P +   R
Sbjct: 8   QLGKTLWDIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGRDYPKPEKDDRR 67

Query: 57  EKYLAFGGSN-IDLESFVKVAGYSFYNTSE-----YSLSTLGSTNTRNNLES------YI 104
                +  +N  D+  F K      +   E      S++ +  T   + L++      YI
Sbjct: 68  APLAIWYQNNPADIADFEKQMRLKTHYVIEPAFLWSSVAEMARTQHTDLLDTLWKGFKYI 127

Query: 105 --ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-----ELHPDTVPDRVMSN 157
              SF+   + +F + +  S     + A    K+C     I     +   DT    ++ +
Sbjct: 128 EEKSFNSTFQGLFSEINLHSEKLGKKPADRNAKLCAIIQKIAEGISQFSTDT---DILGD 184

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ +  + + ++              I+ + D  CG+G
Sbjct: 185 AYEYLIGQFAAGSGKKAGEFYTPQPISQILSEIVTLDSQEPATGKKKKIKQVLDFACGSG 244

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +    +      H I  I   +GQE    T+ +    ML+  +     +D    I 
Sbjct: 245 SLLLNVRKQLGP----HGIGKI---YGQEKNITTYNLARMNMLLHGV-----KDTEFEIH 292

Query: 278 QGSTLSKD------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGL 328
            G TL  D      +   K+  +   ++NPPF  +W   +         GE  RF   GL
Sbjct: 293 HGDTLENDWDILNEMNPAKKMQFDAVVANPPFSLRWSPTEAL-------GEDFRFKNYGL 345

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL+H  + L    +  G  AI+L    LF G A   E  IR  LL++  I+
Sbjct: 346 APKSAADFAFLLHGFHFL----SDDGVMAIILPHGVLFRGGA---EERIRTKLLKDGHID 398

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP +LFF T I   + +L   K  +    V  INA + +     +GK++  + D+ 
Sbjct: 399 TVIGLPANLFFSTGIPVCILVLKRCKKSD---DVLFINAAEHF----EKGKRQNYLEDEH 451

Query: 449 RRQILDIYVSR-ENGKFSR 466
             +I+D Y  R E  +++R
Sbjct: 452 IAKIIDCYQFRKEEERYAR 470


>gi|85711747|ref|ZP_01042803.1| type I restriction-modification system methylation subunit
           [Idiomarina baltica OS145]
 gi|85694362|gb|EAQ32304.1| type I restriction-modification system methylation subunit
           [Idiomarina baltica OS145]
          Length = 571

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 46/292 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 203 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYSGR-VYDPA 251

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   + +               +  +GQE  P T  +    M IR +    
Sbjct: 252 MGSGGFFVSSDKFIEEHAKEQHYDASEQRKHISVYGQESNPTTWRLAAMNMAIRGI---- 307

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D +   +   +   D     R  + ++NPPF  K W  +  A +         R+  G
Sbjct: 308 --DFNFGKKNADSFLNDQHADLRADFVMANPPFNIKDWWNESLADDV--------RWKYG 357

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G     I+L++  + +    + E EIR+ L+E DL+
Sbjct: 358 TPPKGNANFAWVQHMLH--HLAPTGS--MGILLANGSMSSNT--NNEGEIRKRLIEEDLV 411

Query: 388 EAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           E +VALP  LF  T I   +W L+         N K  +RRG+   I+A +L
Sbjct: 412 ECMVALPGQLFTNTQIPACIWFLTKDKANGMVRNEKKRDRRGEFLFIDAREL 463


>gi|172040945|ref|YP_001800659.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852249|emb|CAQ05225.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 865

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 131/290 (45%), Gaps = 50/290 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI +F +   + A +F TP +V  + + ++ D      K    +   +YDPT
Sbjct: 165 VLGYIYEYLIEKFAANAGKKAGEFYTPHEVSLVMSNIVADH----LKGRDEI--QIYDPT 218

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD------ 267
            G+G  L +    VA        P  +    QEL   T+ +    +++R +++D      
Sbjct: 219 SGSGSLLLNIGQAVA---KRMGDPDRIKYFAQELRENTYNLTRMNLVMRGVKADNIVARN 275

Query: 268 --------PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                   P  D S  +Q    L  D          +SNPP+ +KWE +         NG
Sbjct: 276 GDSLAHDWPMFDESDPVQTYQPLYVDA--------VVSNPPYSQKWEPEG--------NG 319

Query: 320 ELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
              RF    L   +     FL+H      + P+G     IVL    LF  R GS E++IR
Sbjct: 320 ADPRFARFALAPKTKADYAFLLH--ELFHVKPDG--ILTIVLPHGVLF--RGGS-EADIR 372

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           R L+E + I+A++ LP+++F+ T IAT + +L   K E  R  V  I+A+
Sbjct: 373 RNLIEANHIDAVIGLPSNIFYGTGIATIIMVL---KQERDRDDVLFIDAS 419


>gi|319765923|ref|YP_004131424.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|317110789|gb|ADU93281.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 493

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 128/300 (42%), Gaps = 45/300 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L+ +  SE+  GA  + TPR ++ +    L+DP        PG     +DP  
Sbjct: 122 LGALYEGLLEKNASELKSGAGQYFTPRVLIDVIVE-LVDP-------KPG--ERCHDPAA 171

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           G  GF+  A  HV      +        +        G EL  +TH + V   L+     
Sbjct: 172 GMFGFMIAASRHVRAKTDDYFDLSEEEIRFQKYKAFSGVELVRDTHRLAVMNALL----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+  +I  G TLS      K +   L+NPPFG K            K GE      
Sbjct: 227 ---HDVHGDILLGDTLSPLGEQLKGYDVILTNPPFGTK------------KGGERATRTD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L   PNG  RAA+V+  + LF G  G   ++IRR L++   
Sbjct: 272 FTFMTSNKQLNFLQHIYRALR--PNGKARAAVVVPDNVLFEGGVG---ADIRRDLMDKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  I+ LPT +F+   + T +   +  +T+   G  + +   DL T++ + GK+  +  D
Sbjct: 327 VHTILRLPTGIFYAQGVKTNVLFFTRGETD--TGNTKEVWVYDLRTNMPSFGKRNPLTKD 384


>gi|218901962|ref|YP_002449796.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820]
 gi|218539137|gb|ACK91535.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820]
          Length = 484

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 137/317 (43%), Gaps = 47/317 (14%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L KI K+   ++ +        + ++YE L+ +  SE   GA  + TPR ++ +   L+ 
Sbjct: 111 LEKIIKSIDNLDWY--NAEKEGLGDLYEGLLEKNASETKSGAGQYFTPRVLIDVMVKLV- 167

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVPH-------G 244
                     P +     DP  GT GF+  A  ++ +    +  + P            G
Sbjct: 168 ---------DPKIGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDVDPEQAEFQKTEAFTG 218

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL  +TH + +   L+  +E          ++QG TLS +    K F   L+NPPFG K
Sbjct: 219 MELVKDTHRLALMNALLHGIEG--------RLEQGDTLSSNGKWIKNFDVILTNPPFGTK 270

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       K GE         + S+  + FL  + N L+   +G  RAA++L  + 
Sbjct: 271 ------------KGGERATRDDLTFETSNKQLNFLQLIYNALK--DDGKARAAVILPDNV 316

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +  KT+  R   + 
Sbjct: 317 LFESGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKTD--RNSTKE 371

Query: 425 INATDLWTSIRNEGKKR 441
           +   DL T++ + GK++
Sbjct: 372 VWVYDLRTNMPSFGKRK 388


>gi|209526221|ref|ZP_03274751.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209493318|gb|EDZ93643.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 485

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 63/304 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N+YE L+ +  +E   GA  + TPR ++     L+           P     + DP  
Sbjct: 129 LGNLYEGLLEKNAAEKKSGAGQYFTPRPLIDCIVRLV----------QPQAGEVIQDPAA 178

Query: 215 GTGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GTGGFL  A  +V +             +        G EL P+TH +C+  +++  +ES
Sbjct: 179 GTGGFLVAADQYVKNQTDDLYTLTQEQGRFQRNEAYRGLELVPDTHRLCLMNLMLHGIES 238

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    +  G +LS D  +  +    L+NPPFG K                    G 
Sbjct: 239 --------VVMCGDSLSPDGESLGKADVILTNPPFGTKK-------------------GG 271

Query: 327 GLPKISDGS---------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           G P  SD S         + F+ H+   L+     GGRAA+VL  + LF    G    ++
Sbjct: 272 GRPTRSDFSVTAETSNKQLAFVEHIYRALK----PGGRAAVVLPDNVLFEDNTG---RKL 324

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ L++   +  I+ LPT +F+   + T +   +  KT+  RG  + +   DL  ++ + 
Sbjct: 325 RQQLMDLCDLHTILRLPTGIFYAQGVKTNVLFFTRGKTD--RGNTKAVWVYDLRANMISF 382

Query: 438 GKKR 441
           GK R
Sbjct: 383 GKTR 386


>gi|91772524|ref|YP_565216.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91711539|gb|ABE51466.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 568

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 137/318 (43%), Gaps = 52/318 (16%)

Query: 133 LYKICKNFSGIELHPDTVPDR--------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L  +  NFS    H     D+        ++ ++YE+ + +F     +    + TP+ +V
Sbjct: 174 LIGLINNFSNTRFHHPEFNDKKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIV 233

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA----MNH--VADCGSHHKIPP 238
            L   +L           P   R +YDP  G+GGF   +     NH  V    +  +   
Sbjct: 234 TLIVEML----------EPYKGR-VYDPAMGSGGFFVSSDKFIENHANVKHYNASEQKKQ 282

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I V +GQE  P T  +    M IR +      D +   +   +   D     R  + ++N
Sbjct: 283 ISV-YGQESNPTTWKLAAMNMAIRGI------DFNFGKKNADSFLDDQHPDLRADFVMAN 335

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF  K+W  +K A +         R+  G P  ++ +  ++ H+ +   L P G    A
Sbjct: 336 PPFNMKEWWHEKLADDP--------RWKYGTPPKNNANFAWMQHMLH--HLAPTGS--MA 383

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L++  +      + E +IR+ L+END++E +VALP  LF  T I   +  L+  K  +
Sbjct: 384 LLLANGSM--SSNTNNEGKIRKTLVENDIVECMVALPGQLFTNTQIPACICFLTKDKAAK 441

Query: 418 -----RRGKVQLINATDL 430
                R G++  I+A +L
Sbjct: 442 DDKRNRHGEILFIDARNL 459


>gi|328676367|gb|AEB27237.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida Fx1]
          Length = 443

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 122/284 (42%), Gaps = 48/284 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 154 VLGHVFEYFLGEFALAEGKQGGQFYTPKSVVELLVKML----------EPYKGR-VFDPC 202

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T  +C   + IR ++S   +  S
Sbjct: 203 CGSGGMFVQSEKFVE---SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNS 259

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL----GRFGPGL 328
               +GS L+ D     +  Y ++NPPF    W            +GEL     R+  G 
Sbjct: 260 ----EGSFLN-DAHKDLKADYIIANPPFNISDW------------SGELLRNDARWQYGT 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  ++ H      L P G   A  VL+   L +    SGE +IR+ L+E +L++
Sbjct: 303 PPAGNANYAWIQHFL--YHLAPTG--VAGFVLAKGALTSNT--SGEGDIRKALVEANLVD 356

Query: 389 AIVALPTDLFFRTNIATYLWILS-NRKTE-----ERRGKVQLIN 426
            IV LP  LF  T I   LW +   RKT+     + R K  LIN
Sbjct: 357 CIVNLPAKLFLNTQIPASLWFIKRGRKTKDILFIDARNKGHLIN 400


>gi|254372254|ref|ZP_04987745.1| hypothetical protein FTCG_01320 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569983|gb|EDN35637.1| hypothetical protein FTCG_01320 [Francisella novicida GA99-3549]
          Length = 503

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 122/284 (42%), Gaps = 48/284 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 154 VLGHVFEYFLGEFALAEGKQGGQFYTPKSVVELLVKML----------EPYKGR-VFDPC 202

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T  +C   + IR ++S   +  S
Sbjct: 203 CGSGGMFVQSEKFVE---SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNS 259

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL----GRFGPGL 328
               +GS L+ D     +  Y ++NPPF    W            +GEL     R+  G 
Sbjct: 260 ----EGSFLN-DAHKDLKADYIIANPPFNISDW------------SGELLRNDARWQYGT 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  ++ H      L P G   A  VL+   L +    SGE +IR+ L+E +L++
Sbjct: 303 PPAGNANYAWIQHFL--YHLAPTG--VAGFVLAKGALTSNT--SGEGDIRKALVEANLVD 356

Query: 389 AIVALPTDLFFRTNIATYLWILS-NRKTE-----ERRGKVQLIN 426
            IV LP  LF  T I   LW +   RKT+     + R K  LIN
Sbjct: 357 CIVNLPAKLFLNTQIPASLWFIKRGRKTKDILFIDARNKGHLIN 400


>gi|241668320|ref|ZP_04755898.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876853|ref|ZP_05249563.1| type I restriction-modification system protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842874|gb|EET21288.1| type I restriction-modification system protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 481

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 46/252 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+            L      G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLAFLNEETFFGKEKTPLSYVMGVMNMILHGI------- 257

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            S NI + +TL KD+ +     R+   L+NPPFG K               E        
Sbjct: 258 TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK---------------EKATIQTNF 302

Query: 329 PKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P  S+ + +LFL H+   L+L    GGR  +V+    LF  +  +    +++ LLEN  +
Sbjct: 303 PIKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNV 356

Query: 388 EAIVALPTDLFF 399
             IV+LP  +F 
Sbjct: 357 HTIVSLPAGVFL 368


>gi|226954358|ref|ZP_03824822.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244]
 gi|226834894|gb|EEH67277.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244]
          Length = 576

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 48/293 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 203 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYKGR-VYDPA 251

Query: 214 CGTGGFLTDAMNHVADCGS--HHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +       H+K       +  +GQE  P T  +    M IR +    
Sbjct: 252 MGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKLAAMNMAIRGI---- 307

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP 326
             D +   +   T   D     R  + ++NPPF  K  W     ++E +       R+  
Sbjct: 308 --DFNFGKKNADTFLDDQHPDLRADFVMANPPFNIKDWWHA---SLESD------VRWKY 356

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  ++ H+ +   L P G    A++L++  + +    + E EIR+ L+E DL
Sbjct: 357 GTPPQGNANFAWMQHMLH--HLSPTGS--MALLLANGSMSSNT--NNEGEIRKNLIEADL 410

Query: 387 IEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           +E IVALP  LF  T I   +W L+         ++K   R GK   I+A +L
Sbjct: 411 VECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLFIDARNL 463


>gi|94263483|ref|ZP_01287295.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93456121|gb|EAT06264.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 517

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 40/270 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE+ + +F +   +   +F TP+ VV L   ++           P   R ++DP C
Sbjct: 159 LGRVYEYFLGKFAAAEGKSGGEFYTPQCVVQLLVEMI----------EPYKGR-VFDPCC 207

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GG    +   V   G   ++  I V +GQE  P T  +    + IR +++D       
Sbjct: 208 GSGGMFVQSERFVEARGG--RLGDIAV-YGQESNPTTWKLAKMNLAIRGIDAD------L 258

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKI 331
                     DL    +  Y L+NPPF    W  D+  D V          R+  G P  
Sbjct: 259 GPHHADCFHNDLHKDLKADYILANPPFNMSDWGSDRLRDDV----------RWKYGTPPA 308

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++ +  ++ H  +   L P+G   A  V+++  +    + S E  IR+ +++ D+I+ +V
Sbjct: 309 NNANYAWIQHFIH--HLAPDG--IAGFVMANGSM--STSTSSEGAIRQAMIDQDMIDCMV 362

Query: 392 ALPTDLFFRTNIATYLWILS-NRKTEERRG 420
           ALP  LF+ T I   LW ++ ++K + +RG
Sbjct: 363 ALPGQLFYTTQIPVCLWFVTRSKKADPKRG 392


>gi|332366399|gb|EGJ44150.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK355]
          Length = 534

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 186/392 (47%), Gaps = 48/392 (12%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY T E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   N
Sbjct: 104 FYETFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKSIIN 160

Query: 140 F-SGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             + ++   D         S ++E++I+ +  +      ++ TP  V  +   +L+  D 
Sbjct: 161 LLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGHD- 219

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  +  
Sbjct: 220 -----QPSNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLR 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +++  L+         NI QG+T++ +    ++  Y +SNPPF   + + +D VE   
Sbjct: 266 LNLILNGLQHSIH-----NIVQGNTITANRHP-EKMDYIVSNPPFKLDFSEWRDRVEALP 319

Query: 317 KNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +  E  RF  G+PK+   S        LF+ H+   L+      G+AA+VL +  +    
Sbjct: 320 EASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLK----DDGQAAVVLPTGFI---T 370

Query: 370 AGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           A SG +  IR+ L++N ++  +V++P+++F  T     +  +  +     +G V LI+A+
Sbjct: 371 AQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDAS 426

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +L T ++    ++ +++ ++ ++I++ ++ +E
Sbjct: 427 NLGTKVKEGKNQKTVLSPEEEQKIIETFIQKE 458


>gi|325981135|ref|YP_004293537.1| N-6 DNA methylase [Nitrosomonas sp. AL212]
 gi|325530654|gb|ADZ25375.1| N-6 DNA methylase [Nitrosomonas sp. AL212]
          Length = 772

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 139/311 (44%), Gaps = 44/311 (14%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++ + F+ I   P      +   IYE+ +  F     +   +F TPR VV L   ++ +P
Sbjct: 141 QLLRTFADI---PANATGDLFGQIYEYFLSEFARSEGQKGGEFFTPRSVVRLMVEII-EP 196

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-IPPILVPHGQELEPETHA 253
                         ++DP CG+GG    +   +A   +  K     +   GQE   +T  
Sbjct: 197 HGG----------KVFDPACGSGGMFVQSAQFIAAHRNELKGADSGVYVCGQEKTQDTVK 246

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAV 312
           +    + +  L  +        I+Q +T  +D +   ++F Y L+NPPF    +    +V
Sbjct: 247 LAKMNLAVNGLRGE--------IKQANTYYEDPYDSFEQFDYVLANPPFNVD-DVSLSSV 297

Query: 313 EKEHKNGELG---------RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           EK+ +    G         +   G   + +G+ L++   A  L+  P G  RAA+V+++S
Sbjct: 298 EKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFATSLK--PQG--RAALVMANS 353

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
                 A   E++IR+ L+E +LI A++ LP+++F+   +   LW     K   R  ++ 
Sbjct: 354 A---SDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTLPATLWFFDKAK---RGDRIL 407

Query: 424 LINATDLWTSI 434
            I+A +++T I
Sbjct: 408 FIDARNIFTQI 418


>gi|295426377|ref|ZP_06819030.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295063936|gb|EFG54891.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 537

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 153/316 (48%), Gaps = 45/316 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S I+E++I+ +         ++ TPR +  +   +L+       K  P  ++ +YDP  G
Sbjct: 181 STIFEYMIQDYNKNGGGNYAEYYTPRTISKIIADILIG------KAKPENVK-VYDPAAG 233

Query: 216 TGGFLTDAMNHVA--DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           +G  L +  N +    C            + Q++  ++  +    +++  L         
Sbjct: 234 SGTLLMNVANRIGVDKC----------TVYSQDISQKSSNLLRLNLILNNLSHSIH---- 279

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI QG+T+  +    ++  Y +SNPPF   +   +D VE    + E+  +  G+PKI +
Sbjct: 280 -NIVQGNTILNNKHP-EKMDYIVSNPPFKLDFSDWRDQVESIPNSSEI--YFAGIPKIPN 335

Query: 334 ---GSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
               SM    LF+ H+ + L    N  G+A +V+ +  L    A SG + +IR++L++N 
Sbjct: 336 KKKNSMAIYELFIQHIIHSL----NDKGKAGVVVPTGFL---TAQSGIDKKIRKFLVDNG 388

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +I+ +V++P+++F  T     +   +  K +++   VQLI+A+ L   I+  G +R  ++
Sbjct: 389 MIDKVVSMPSNVFANTGTNVSVIFFNKVKQDDQ---VQLIDASKLGKKIKENGLQRTALS 445

Query: 446 DDQRRQILDIYVSREN 461
            +  ++I+D  V R++
Sbjct: 446 VEDIKKIVDTAVERKD 461


>gi|260913242|ref|ZP_05919724.1| type I restriction-modification system [Pasteurella dagmatis ATCC
           43325]
 gi|260632829|gb|EEX50998.1| type I restriction-modification system [Pasteurella dagmatis ATCC
           43325]
          Length = 537

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDV-VHLATALLLDPDDALFKESPGMIRTLYDP 212
            + + YE+LI +F S   + A +F TP+ V   L+  + LD  +        +   L D 
Sbjct: 181 ALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTVLSRIVTLDSQNPASGNKIKLDNVL-DF 239

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +  + +A    H     I   +GQE    T+ +    ML+  +     +D 
Sbjct: 240 ACGSGSLLLNVRHQMAQNNGH-----IGKIYGQEKNITTYNLARMNMLLHGV-----KDT 289

Query: 273 SKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGR 323
             +I  G +L  D          K+  F   ++NPPF  +WE K++ A +   KN     
Sbjct: 290 EFSIHHGDSLLNDWDILNETNPAKKLTFDAVIANPPFSYRWEPKEELANDFRFKN----- 344

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L    +  G  AI+L    LF  R+G+ E +IR+ LL+
Sbjct: 345 --YGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLF--RSGA-EEKIRKKLLK 395

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ I+ LP +LF+ T I   + +L   K ++    V  INA D +     +GK++  
Sbjct: 396 DGHIDTIIGLPANLFYSTGIPVCVLVLKKCKKDD---DVLFINAADDF----EKGKRQNR 448

Query: 444 INDDQRRQILDIYVSRE 460
           + D+   +I+D Y  R+
Sbjct: 449 LTDEHIDKIVDCYQFRK 465


>gi|260773573|ref|ZP_05882489.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio metschnikovii CIP 69.14]
 gi|260612712|gb|EEX37915.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio metschnikovii CIP 69.14]
          Length = 510

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 167/397 (42%), Gaps = 66/397 (16%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           EK +  G   +DLES+       FY   +  L+ LG++     +E+ +       KAI+ 
Sbjct: 46  EKLIPKGYRWVDLESYKGDGLLGFY---QEMLTHLGAS-----VENEVV------KAIYA 91

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F +T+     +  L  +    S IE H   V      ++Y  LI +   +   GA  
Sbjct: 92  ---FPTTV--FSHSENLKAVIDGISKIEWH--QVGKDGFGDVYSGLIDKSAQDTRSGAGQ 144

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR +V+    L+           P +   + DP  G+GGFL  A +++ +     K 
Sbjct: 145 YFTPRSLVNTIVRLI----------QPNLGELIQDPATGSGGFLVSADSYIRNKYLREKY 194

Query: 237 ---PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              PP     G E+E  T  +C+    +  L++        NI  G  L+ D+       
Sbjct: 195 KANPPKY--QGVEIEKNTRRICLMNTFLHELDA--------NIIYGDALTDDVAELAEAD 244

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG K    +             R     P ++   + FL H+   L L P  G
Sbjct: 245 VIIANPPFGNKAGGQRPL-----------RNDIPFPNVNK-QLAFLQHIY--LGLKP--G 288

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+VL  + LF   AG G +E+RR L+    +  I+ LPT +F+   + T +   +  
Sbjct: 289 GRAAVVLPDNVLF--EAGVG-TEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFFTKG 345

Query: 414 KTEERRGK---VQLINATDLWTSIRNEGKKRRIINDD 447
             +++  +    Q +   DL T++ + GK+    N D
Sbjct: 346 SVKDKYQEESCTQNVWVYDLRTNMPSFGKRTPFGNSD 382


>gi|296876905|ref|ZP_06900951.1| type I restriction enzyme M protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432097|gb|EFH17898.1| type I restriction enzyme M protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 534

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 186/393 (47%), Gaps = 48/393 (12%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +FY T E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   
Sbjct: 103 TFYETFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKAII 159

Query: 139 NFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           N        +T+  +     S ++E++I+ +  +      ++ TP  V  +   +L+  D
Sbjct: 160 NLLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGDD 219

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                  P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  + 
Sbjct: 220 ------KPQNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLL 264

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              +++  L+         NI QG+T+  +    ++  Y +SNPPF   + + +D VE  
Sbjct: 265 RLNLILNGLQHSIH-----NIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETL 318

Query: 316 HKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +  E  RF  G+PK+   S        LF+ H+     L P+  G+AA+VL +  +   
Sbjct: 319 PEASE--RFFAGVPKVPAKSKDKMAIYELFVQHII--YSLKPD--GQAAVVLPTGFI--- 369

Query: 369 RAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
            A SG +  IR+ L++N ++  +V++P+++F  T     +  +  +     +G V LI+A
Sbjct: 370 TAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDA 425

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           ++L T ++    ++ +++ ++ ++I+  ++ +E
Sbjct: 426 SNLGTKVKEGKNQKTVLSPEEEQKIVGTFIKKE 458


>gi|299822015|ref|ZP_07053902.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Listeria grayi DSM 20601]
 gi|299816643|gb|EFI83880.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Listeria grayi DSM 20601]
          Length = 531

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 46/301 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D  +S+IYE+L+ +F + ++     + TP+++  +   +L       F        ++YD
Sbjct: 165 DDAISDIYEYLVAKFATVLASDMGQYYTPKEISDVMAQILT------FGREEAEHFSIYD 218

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L    +++ +  SH +   ++   GQE +   + +    +++  +E +   D
Sbjct: 219 PTVGSGSLLLTTASYMKN--SHKR--GMIKYFGQEKDATPYRLSRMNLMMHGVEYN---D 271

Query: 272 LSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGE 320
           +S  I    TL  D   G        + F   ++NPP+   W   +++ D   +E+    
Sbjct: 272 VS--INHADTLKSDWPDGVVEGKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREY---- 325

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 G+   +     FL+H    LE      GR AI+L    LF G A   E  IR+ 
Sbjct: 326 ------GVAPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRGAA---EGRIRKA 372

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L++   IEA++  P  LF  T+I   + IL   + E     V  I+A+  +  ++N+ + 
Sbjct: 373 LIDKHQIEAVIGFPDKLFLNTSIPVCVLILRKNRVE---SDVLFIDASKDFEKMKNQKRL 429

Query: 441 R 441
           R
Sbjct: 430 R 430


>gi|225155294|ref|ZP_03723787.1| type I restriction modification system, methyltransferase subunit
           [Opitutaceae bacterium TAV2]
 gi|224803901|gb|EEG22131.1| type I restriction modification system, methyltransferase subunit
           [Opitutaceae bacterium TAV2]
          Length = 413

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 42/279 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  + YE L+ +  ++V  GA  + TPR ++  A   ++ P        PG  +T+ DP 
Sbjct: 126 VKGDAYEGLLEKNAADVKGGAGQYFTPRALIA-AMVEVMAP-------QPG--QTICDPA 175

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +++A           +       HG EL      +C   +++  +  D 
Sbjct: 176 CGTGGFLLAAHDYLARPERKLDKEQKRFLKNGTLHGVELVDSVTRLCAMNLMLHGIGGDS 235

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            + L          ++D  +GK   Y   L+NPPFGK     K +V   ++ GE  +   
Sbjct: 236 DKTL-------PVTTRDALSGKHGEYDIVLANPPFGK-----KSSVTIVNEEGESAKESL 283

Query: 327 GLPK------ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            + +       S+  + FL H+ + L+      GRAA+VL  + LF G  G+GE+ IRR 
Sbjct: 284 VINRDDFWASTSNKQLNFLQHIFSILK----QHGRAAVVLPDNVLFEG--GAGET-IRRQ 336

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LL+   +  ++ LPT +F+   +   +     +   ++R
Sbjct: 337 LLQQADVHTLLRLPTGIFYAQGVKANVLFFDKKPANDKR 375


>gi|313682025|ref|YP_004059763.1| n-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313154885|gb|ADR33563.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 495

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 54/260 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE L++  GS+     E F TPR ++ + T ++          +P + +T+YDP  
Sbjct: 155 LSIIYEKLLKDMGSDGGNSGE-FYTPRPLIKVMTDVV----------NPQVGQTIYDPAV 203

Query: 215 GTGGFLTDAMNHVADC-GSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL +A NH+       +K   I V            G E  P ++ + V  M++  
Sbjct: 204 GSCGFLIEAYNHIRYLDAKENKQRDISVNQLKFLSEDTFFGNEKTPLSYVMGVMNMILHG 263

Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E       S NI + +TL+KD   L    R+   L+NPPFG K        EKE     
Sbjct: 264 IE-------SPNISKTNTLTKDIRGLEEKDRYDIILANPPFGGK--------EKE----- 303

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+ N L++     GR  +V+    LF  +  +    +++
Sbjct: 304 --QIQQNFPIKSNATELLFLQHMMNSLKV----NGRCGVVIPEGVLF--QTNNAFQAVKQ 355

Query: 380 WLLENDLIEAIVALPTDLFF 399
            LLE   +  I++LP+ +F 
Sbjct: 356 ELLERFNVHTILSLPSGVFL 375


>gi|32266922|ref|NP_860954.1| type I restriction-modification system [Helicobacter hepaticus ATCC
           51449]
 gi|32262974|gb|AAP78020.1| type I restriction-modification system [Helicobacter hepaticus ATCC
           51449]
          Length = 475

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 38/273 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ +  +E   GA  + TPR        +L+D    L +  P M   + DP 
Sbjct: 123 VKGAIYEGLLAKNATETKAGAGQYFTPR--------VLIDSIVGLMELKPNM--EVCDPA 172

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A   + A      +I  +      G+++ P   ++C   + +  +  +   
Sbjct: 173 CGTGGFLLSAYEAMKAQTKDKEEIKCLRNERLCGKDITPLVASLCAMNLYLHGIGGEGGI 232

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK------WEKDKDAVEKEHKNGELGRF 324
               +     +LS+     +RF   L+NPPFGKK       E  K   +K+  N E    
Sbjct: 233 IEIGD-----SLSE--LGNRRFDRVLTNPPFGKKSATKILAENGKVKSQKDEYNRE---- 281

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  S+  + FL H+ N L++    GG+AA+VL  + LF   AG+GE ++R+ LLE+
Sbjct: 282 -DFFATTSNKQLNFLQHIMNLLKI----GGKAAVVLPDNVLF--EAGAGE-KVRKKLLED 333

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
             +  I+ LPT +F+   +   +       T E
Sbjct: 334 FNLHTILRLPTGIFYAQGVKANVLFFDKVATSE 366


>gi|313204423|ref|YP_004043080.1| type II restrictioN-modification system, m subunit [Paludibacter
           propionicigenes WB4]
 gi|312443739|gb|ADQ80095.1| type I restriction-modification system, M subunit [Paludibacter
           propionicigenes WB4]
          Length = 546

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 69/388 (17%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYK-----ICKNFSGIE-----LHPDTVPDRVM 155
           SF    + +F + + +S     +K G  Y+     +C   + IE        DT    ++
Sbjct: 136 SFESTFQGLFSEINLNS-----DKLGKTYEERNAELCNIITKIEQGIVKFSKDT---DIL 187

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTC 214
            + YE LI +F ++  + A +F TP+ +  + ++++ LD  +    +   + + + D  C
Sbjct: 188 GDAYEFLIGQFAADSGKKAGEFYTPQQISTILSSIVTLDSQNPAAGKKKKLDKVM-DLAC 246

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +  N +      H I  I   +GQE    T+ +    ML+  +     +D   
Sbjct: 247 GSGSLLLNVRNQLG----KHGIGKI---YGQEKNITTYNLARMNMLLHGV-----KDTEF 294

Query: 275 NIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-G 325
           +I  G TL  D      +   K+  F   ++NPPF  +WE  +         GE  RF  
Sbjct: 295 HIHHGDTLLNDWDILNEMNPAKKMEFDAVVANPPFSLRWEPSEAM-------GEDFRFKN 347

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GL   S     FL+H  + L       G  AI+L    LF G A   E  IR  LL++ 
Sbjct: 348 YGLAPKSAADFAFLLHGFHFLAQE----GTMAIILPHGVLFRGGA---EERIRTKLLKDG 400

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ LP++LFF T I   + +L   K   +   V  INA++ +     +GK++  + 
Sbjct: 401 NIDTVIGLPSNLFFSTGIPVCILVLKKCK---KFDDVLFINASEYF----EKGKRQNRLR 453

Query: 446 DDQR------RQILDIYVSR-ENGKFSR 466
           D +       R+I++ Y  R E  ++SR
Sbjct: 454 DGEEGEPNDIRKIVETYQFRTEEERYSR 481


>gi|237654256|ref|YP_002890570.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|237625503|gb|ACR02193.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 530

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 132/320 (41%), Gaps = 53/320 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ R   E   GA  + TPR ++    +++           P +   + DP  
Sbjct: 142 LGDLYEDLLERNAGEKKSGAGQYFTPRHLIDSIVSVM----------KPQLGDVIQDPAA 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETHAVCVAGMLIRRL 264
           GT GFL  A N++     H+    +             HG EL  +TH + +  ML+  +
Sbjct: 192 GTCGFLIAANNYLR---QHNDFDSLSDEAQRKYRHQTFHGMELVQDTHRLALMNMLLHGI 248

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E          +  G TLS D          LSNPPFG K            K G L   
Sbjct: 249 EG--------GVTYGDTLSDDHKGLPPATLILSNPPFGTK------------KGGGLPTR 288

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           G    + S+    FL H+   L+     GGRAA+VL  + LF    G   ++IRR L++ 
Sbjct: 289 GDLTFETSNKQFAFLQHIYRALK----PGGRAAVVLPDNVLFESNIG---ADIRRDLMDK 341

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  I+ LPT +F+   + T +   +   T+  +G  + +   D+  ++   G KR   
Sbjct: 342 CNLHTILRLPTGIFYAQGVKTNVLFFTRGDTD--KGNTKEVWVYDMRANMPAFG-KRTPF 398

Query: 445 NDDQRRQILDIYVSRENGKF 464
             D  R   D+  S+   KF
Sbjct: 399 TRDYFRTPPDVPASQPRDKF 418


>gi|94263106|ref|ZP_01286924.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93456477|gb|EAT06591.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 517

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 186/441 (42%), Gaps = 70/441 (15%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPT 51
           MTE T + A+L   N +W  A+ + G     ++  V+L    L+ +  A       LE T
Sbjct: 1   MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDELEAT 60

Query: 52  RSAV------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
           R         R++Y A   +NI    +V          +E    T+G T      E+ +A
Sbjct: 61  RDTEYTDPEDRDEYAA---ANI---FWVPKEARWDKVQAEAPQPTIGKTID----EAMVA 110

Query: 106 SFSDNA--KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
              +N   + +    D+S       + G L K   +   ++     V D  +  +YE+ +
Sbjct: 111 LERENPSLRGVLPK-DYSRPALDKTRLGELVKTVGDID-LQARQSGVQD-PLGRVYEYFL 167

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   +   +F TP+ VV L   ++           P   R ++DP CG+GG    +
Sbjct: 168 GKFAAAEGKSGGEFYTPQCVVQLLVEMI----------EPYKGR-VFDPCCGSGGMFVQS 216

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V   G   ++  I V +GQE  P T  +    + IR +++D                
Sbjct: 217 ERFVEARGG--RLGDIAV-YGQESNPTTWKLAKMNLAIRGIDAD------LGPHHADCFH 267

Query: 284 KDLFTGKRFHYCLSNPPFG-KKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            DL    +  Y L+NPPF    W  D+  D V          R+  G P  ++ +  ++ 
Sbjct: 268 NDLHKDLKADYILANPPFNMSDWGGDRLRDDV----------RWKYGAPPANNANYAWIQ 317

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  +   L P+G   A  V+++  +    + S E  IR+ +++ D+I+ +VALP  LF+ 
Sbjct: 318 HFIH--HLAPDG--IAGFVMANGSMST--STSSEGAIRQAMIDRDMIDCMVALPGQLFYT 371

Query: 401 TNIATYLWILS-NRKTEERRG 420
           T I   LW ++ ++K + +RG
Sbjct: 372 TQIPVCLWFVTRSKKADPKRG 392


>gi|262374258|ref|ZP_06067534.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
 gi|262310816|gb|EEY91904.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
          Length = 576

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 48/293 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 203 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYKGR-VYDPA 251

Query: 214 CGTGGFLTDAMNHVADCGS--HHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +       H+K       +  +GQE  P T  +    M IR +    
Sbjct: 252 MGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKLAAMNMAIRGI---- 307

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP 326
             D +   +   +  +D     R  + ++NPPF  K  W     ++E +       R+  
Sbjct: 308 --DFNFGKKNADSFLEDQHPDLRADFVMANPPFNIKDWWHA---SLEND------VRWKY 356

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  ++ H+ +   L P G    A++L++  + +    + E EIR+ L+E DL
Sbjct: 357 GTPPQGNANFAWMQHMLH--HLSPTGS--MALLLANGSMSSNT--NNEGEIRKNLIEADL 410

Query: 387 IEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           +E IVALP  LF  T I   +W L+         ++K   R GK   I+A +L
Sbjct: 411 VECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLFIDARNL 463


>gi|120556287|ref|YP_960638.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120326136|gb|ABM20451.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 570

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 135/338 (39%), Gaps = 77/338 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 202 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYSGR-VYDPA 250

Query: 214 CGTGGFLTD--------AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            G+GGF           A     D G   K   +   +GQE  P T  +    M IR + 
Sbjct: 251 MGSGGFFVSSDKFIEEHASEQHYDAGEQKKHISV---YGQESNPTTWRLAAMNMAIRGI- 306

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF 324
                D +   +   T   D     R  + ++NPPF  K W  +  A +         R+
Sbjct: 307 -----DFNFGKKNADTFLDDQHPDLRADFVMANPPFNIKDWWSESLADDV--------RW 353

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  ++ H+ +   L P G    A++L++  + +    + E EIR+ L+E 
Sbjct: 354 KYGTPPKGNANFGWMQHMLH--HLAPTGS--MALLLANGSMSSNT--NNEGEIRKRLVEE 407

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K                   +RNE K+    
Sbjct: 408 DLVECMVALPGQLFTNTQIPACIWFLTKDKAN---------------GMVRNEKKR---- 448

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
             D+R + L              +D R  G+ R +VLR
Sbjct: 449 --DRREEFL-------------FIDARNLGFMRDRVLR 471


>gi|224023954|ref|ZP_03642320.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM
           18228]
 gi|224017176|gb|EEF75188.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM
           18228]
          Length = 640

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 178/423 (42%), Gaps = 57/423 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +   ++  IYE+ + +F   V+     F TP+ +V +   +L +P+  +         
Sbjct: 159 DEIGGDIIGRIYEYFLSKFAKAVASDDGVFFTPKSLVKMLVNVL-EPEQGV--------- 208

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            ++DP CG+GG      + V   G +      +   GQE       +C+  M +  L   
Sbjct: 209 -MFDPACGSGGMFVQTGDFVNAAGMNANTQ--MTFFGQEKVEYNAQLCLMNMAVHGLNG- 264

Query: 268 PRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             R +S +  + ++   D F    +  Y ++NPPF     K + A          GR   
Sbjct: 265 --RIVSGD--EANSFYHDAFNLAGKCDYVIANPPFNVDKVKSESAFNA-------GRLPF 313

Query: 327 GLP-------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           GLP       ++ + + L++ +    L    N  GRA  V++SS      + + + +IR 
Sbjct: 314 GLPGVNAKTKEVGNANYLWINYFYAYL----NERGRAGFVMASSAT---DSSNKDRDIRE 366

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L++   ++ +V++  + F+  ++   LW     K EE R KV  I+A   +T +     
Sbjct: 367 QLVKTGHVDVMVSVGNNFFYTLSLPCSLWFFDKAKREENRDKVLFIDARKYYTVV----- 421

Query: 440 KRRIINDDQRRQILD----IYVSR-ENGKFSRMLD-YRTFGYRRIKVLRPLRMSF--ILD 491
             R +N+    Q+L+    +++ R E  K+  +L+ Y       +  +    +SF  +LD
Sbjct: 422 -DRTLNEWTEWQLLNLQAIVHLYRGETDKYQALLEKYNQTISEAVNSISEESLSFFPLLD 480

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                +  + +TW   SP +   + ++ + +  QI          +E +K  E K +++ 
Sbjct: 481 SETAGQFNSSLTWLN-SPWNN--YDELSRNLNGQIEQTKSCVRLAEERLKKRELKPMRLA 537

Query: 552 ASK 554
             K
Sbjct: 538 GDK 540


>gi|325697669|gb|EGD39554.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK160]
          Length = 534

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 152/313 (48%), Gaps = 42/313 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND------QPSNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+  +    ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK+   S
Sbjct: 280 IVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKS 336

Query: 336 M-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                   LF+ H+   L+      G+AA+VL +  +    A SG +  IR+ L++N ++
Sbjct: 337 KDKMAIYELFVQHIIYSLK----SDGQAAVVLPTGFI---TAQSGIDKAIRQHLVDNQML 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ +
Sbjct: 390 GGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPE 445

Query: 448 QRRQILDIYVSRE 460
           + ++I+D ++ +E
Sbjct: 446 EEQKIVDTFIKKE 458


>gi|260579031|ref|ZP_05846931.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602832|gb|EEW16109.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
          Length = 388

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 39/252 (15%)

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           M  VAD       P  L  +GQE +  T A+    M++   E+        +I+QG TLS
Sbjct: 1   MIKVADSA-----PNGLSIYGQEKDNATWALSRMNMILHGNET-------HDIRQGDTLS 48

Query: 284 KDLFTG----KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSML 337
              F      + F Y ++NPPF  K W   K+  +KE+     GRF G   P   +G   
Sbjct: 49  DPKFLKGEQLQTFDYFVANPPFSVKTW---KNGFDKEY-----GRFDGFAEPPEKNGDYA 100

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H+   L+      GR A++L    LF G     E+ IR  L+   LI+AI+ LP +L
Sbjct: 101 FLLHMVKSLK----SDGRGAVILPHGVLFRGNT---EAAIREELIRRGLIKAIIGLPANL 153

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T I   + ++  ++   R G + +I+A+        +G K R+   D R+ I+D Y+
Sbjct: 154 FYGTGIPACIIVIDKKEAANRTG-IFMIDAS---KGFEKDGAKNRLRPRDMRK-IIDTYL 208

Query: 458 SREN-GKFSRML 468
           + ++  +++RM+
Sbjct: 209 AGDDVERYARMV 220


>gi|306825748|ref|ZP_07459087.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432109|gb|EFM35086.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 534

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 187/393 (47%), Gaps = 48/393 (12%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +FY T E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   
Sbjct: 103 TFYETFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKAII 159

Query: 139 NF-SGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           N  + ++   D         S ++E++I+ +  +      ++ TP  V  +   +L+  D
Sbjct: 160 NLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGHD 219

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                  P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  + 
Sbjct: 220 ------QPSNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLL 264

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              +++  L+         NI QG+T+  +    ++  Y +SNPPF   + + +D VE  
Sbjct: 265 RLNLILNGLQHSIH-----NIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDRVEIL 318

Query: 316 HKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +  E  RF  G+PK+   S        LF+ H+     L P+  G+AA+VL +  +   
Sbjct: 319 PEASE--RFFAGVPKVPAKSKDKMAIYELFVQHII--YSLKPD--GQAAVVLPTGFI--- 369

Query: 369 RAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
            A SG +  IR+ L++N ++  +V++P+++F  T     +  +  +     +G V LI+A
Sbjct: 370 TAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDA 425

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           ++L T ++    ++ +++ ++ ++I++ ++ +E
Sbjct: 426 SNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKE 458


>gi|281177459|dbj|BAI53789.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 545

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 156/321 (48%), Gaps = 59/321 (18%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPT 213
           + I+E+LI+ + S       ++ TP  V  +   +L+       K   G++R +  YDP+
Sbjct: 183 ATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMAEILVP------KAQQGVVRNVSCYDPS 236

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRR 270
            G+G  L +  + + +  C              Q++ +  +  + +  +L   + S P  
Sbjct: 237 AGSGTLLMNVAHAIGEDRCS----------IFAQDISQKSSSLLRLNLILNNLVHSIP-- 284

Query: 271 DLSKNIQQGSTL----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFG 325
               N+ QG+T+     KD    KRF Y +SNPPF   +   +DA++ KE++     RF 
Sbjct: 285 ----NVIQGNTILHPFHKDGGALKRFDYIVSNPPFKMDFSDFRDALDSKENQQ----RFF 336

Query: 326 PGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEI 377
            G+PKI   +        LFL H+     L P  GG+AA+V+ +  +    A SG +  I
Sbjct: 337 AGIPKIKAKARDKMEIYQLFLQHII--FSLKP--GGKAAVVVPTGFI---TAQSGIDKGI 389

Query: 378 RRWLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           R  L++N ++  +V++P+++F    TN++      SN++      KV LI+A++L   ++
Sbjct: 390 REHLVQNKMLAGVVSMPSNIFATTGTNVSILFIDASNKE------KVVLIDASNLGEKVK 443

Query: 436 NEGKKRRIINDDQRRQILDIY 456
           +   ++ ++ + + ++I + +
Sbjct: 444 DGKNQKTVLTECEEKRICEAF 464


>gi|145301150|ref|YP_001143991.1| type I restriction-modification system M subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853922|gb|ABO92243.1| type I restriction-modification system M subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 478

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 164/397 (41%), Gaps = 66/397 (16%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           EK +  G   IDLES  +     FY   +  L+ LG+         Y+ +  +  +AI+ 
Sbjct: 46  EKLIPKGYRWIDLESHTEDGLLGFY---QEMLTHLGA---------YVEN--EVVRAIYA 91

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F +T+     +  L  +    S IE H   V       +Y  LI +   +   GA  
Sbjct: 92  ---FPTTV--FSHSENLKAVINGISKIEWH--QVGKDGFGELYSGLIDKSAQDTRSGAGQ 144

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR +V+    L+           P +   + DP  G+GGFL  A N++ +     K 
Sbjct: 145 YFTPRSLVNTILRLI----------QPNLGELIQDPATGSGGFLVSADNYIRNKYPREKY 194

Query: 237 ---PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              PP     G E+E  T  +C+    +  L++        NI  G  L+ D+       
Sbjct: 195 KANPPKC--QGVEIEKNTRRICLMNTFLHELDA--------NIIYGDALTDDVAELAEAD 244

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG K    +             R     P  ++  + FL H+   L L P  G
Sbjct: 245 VIIANPPFGNKAGGQRPL-----------RNDIPFPN-ANKQLAFLQHIY--LGLKP--G 288

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+VL  + LF   AG G +E+RR L+    +  I+ LPT +F+   + T +   +  
Sbjct: 289 GRAAVVLPDNVLF--EAGVG-TEVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKG 345

Query: 414 KTEER---RGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +++       Q +   DL T++ + GK+    N D
Sbjct: 346 SAKDKYQEESCTQNVWVYDLRTNMPSFGKRTPFGNSD 382


>gi|295401869|ref|ZP_06811833.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110990|ref|YP_003989306.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294976123|gb|EFG51737.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216091|gb|ADP74695.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 643

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 125/266 (46%), Gaps = 31/266 (11%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YD T G    L DA  +    G    +      +GQE+  E + +    + +  +  +
Sbjct: 164 SVYDGTAGIANILVDAYRYAKGKGKDISV------YGQEINEELYVIGKLNLFVNHILPE 217

Query: 268 PRRDLSKNIQQGSTLS--KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                  +++ G T+   K L  G+  +F Y + N PFG +    + A+   +   EL  
Sbjct: 218 -----QGDMKLGDTIRDPKWLENGRLMQFDYIMMNFPFGLRDWGYEFAINDPYHRFEL-- 270

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               LP  S G   F++H    L    N  G+AA+++    L  G A   E +IR  LL+
Sbjct: 271 --YALPSKSQGDYSFILHALASL----NQEGKAALIVPFGTLVRGAA---ERKIRSILLK 321

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +D+IE+IV+LP +LF  T I   L +L+  K   ++GKVQ INA   +   R +    + 
Sbjct: 322 DDVIESIVSLPNNLFSGTGIQVALLLLNKHKPSHKKGKVQFINAEGDYERTRTQ----KY 377

Query: 444 INDDQRRQILDIYVSRENG-KFSRML 468
           +     ++I++   + EN  K+SR++
Sbjct: 378 LTSKHVQKIIETLEAYENKEKYSRIV 403


>gi|167740610|ref|ZP_02413384.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 14]
          Length = 535

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 170/385 (44%), Gaps = 59/385 (15%)

Query: 102 SYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTVPD 152
           SYI   SF+   + +F + + +S     +K G  Y     ++CK    I   L   +   
Sbjct: 125 SYIENESFASTFRGLFSEINLAS-----DKLGKTYGERNAQLCKIIGEITKGLAAFSTDS 179

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV-VHLATALLLDPDDALFKESPGMIRTLYD 211
             + + YE+LI +F +   + A +F TP+ V   L+T + LD  +    +    + ++ D
Sbjct: 180 DTLGDAYEYLIGQFAAGSGKKAGEFYTPQPVSTILSTIVTLDSQEPATGQR-SHLESVMD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +      H I  I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHRMGT----HGIGKI---YGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D    +        +F   ++NPPF  +WE  +         GE  R
Sbjct: 287 SEFEIFHGDTLFNDWDMLRETNPAKMPKFDAVVANPPFSYRWESTEAM-------GEDVR 339

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF  R+G+ E+ IR  LL
Sbjct: 340 FKNHGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLF--RSGA-EARIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +     +GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEYF----EKGKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSR 466
            +  +   +I+D Y  R E  ++SR
Sbjct: 446 QLLPEHIHKIVDTYKFRKEEARYSR 470


>gi|288947722|ref|YP_003445105.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Allochromatium vinosum DSM 180]
 gi|288898238|gb|ADC64073.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Allochromatium vinosum DSM 180]
          Length = 487

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 51/286 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N+YE L+ +  +E   GA  + TPR ++     L+        K  PG +  + DP  
Sbjct: 128 LGNLYEGLLEKNAAEKKSGAGQYFTPRPLIDCLVRLM--------KPKPGEV--IQDPAA 177

Query: 215 GTGGFLTDAMNHVADCGSHHKI--PPILVPH-----GQELEPETHAVCVAGMLIRRLESD 267
           GTGGFL  A +++        +    IL        G EL P+ H +C+  +++  +E  
Sbjct: 178 GTGGFLVAADHYMKQNDKFFDLDEKEILFQQYSAYKGAELVPDAHRLCLMNLILHGIEG- 236

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +    TLS D     +    LSNPPFG K              G+  R    
Sbjct: 237 -------TVTCSDTLSPDGLALGKADLILSNPPFGTK-----------KGGGKPNRADFS 278

Query: 328 LPK-ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           +    S+  + F+ H+   L+     GGRAA+V+  + LF    G     +R W++E   
Sbjct: 279 ITSDTSNKQLAFVEHIVRALK----KGGRAAVVVPDNVLFEDNTG---RRLRTWMMELCD 331

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           +  I+ LPT +F+   + T +   +       RG+    N   +W 
Sbjct: 332 LHTILRLPTGIFYAQGVKTNVLFFT-------RGQTDKANTESVWV 370


>gi|262377417|ref|ZP_06070640.1| type I restriction-modification system, M subunit [Acinetobacter
           lwoffii SH145]
 gi|262307647|gb|EEY88787.1| type I restriction-modification system, M subunit [Acinetobacter
           lwoffii SH145]
          Length = 576

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 48/293 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 203 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYKGR-VYDPA 251

Query: 214 CGTGGFLTDAMNHVADCGS--HHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +       H+K       +  +GQE  P T  +    M IR +    
Sbjct: 252 MGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKLAAMNMAIRGI---- 307

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELG-RFGP 326
             D +   +   +   D     R  + ++NPPF  K W          H + E   R+  
Sbjct: 308 --DFNFGKKNADSFLDDQHPDLRADFVMANPPFNIKDWW---------HASLESDVRWKY 356

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  ++ H+ +   L P G    A++L++  + +    + E EIR+ L+E DL
Sbjct: 357 GTPPQGNANFAWMQHMLH--HLSPTGS--MALLLANGSMSSNT--NNEGEIRKNLIEADL 410

Query: 387 IEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           +E IVALP  LF  T I   +W L+         ++K   R GK   I+A +L
Sbjct: 411 VECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLFIDARNL 463


>gi|298504591|gb|ADI83314.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter sulfurreducens KN400]
          Length = 716

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 132/313 (42%), Gaps = 46/313 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + +F S   +   +F TPR VV L   ++           P   R +YDP 
Sbjct: 161 VLGRVYEYFLSQFASAEGKKGGEFYTPRCVVRLLVEMI----------EPYKGR-VYDPC 209

Query: 214 CGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CG+ G    ++     H    G+       +  +GQE    T  +    + IR ++    
Sbjct: 210 CGSSGMFVQSVEFIRAHANGNGNSGNAKADISIYGQESNYTTWRLAKMNLAIRGIDG--- 266

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGL 328
                 I  G T   D F   +  + L+NPPF    W  D+   +K        R+  G+
Sbjct: 267 -----QIAHGDTFHNDRFPDLKADFILANPPFNISDWGGDRLRDDK--------RWQYGV 313

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  ++ H+     L P G   A  +L +  L +     GE  IR+ +++ +L++
Sbjct: 314 PPTGNANFAWVQHMI--YHLAPKG--VAGFILGNISLTS--ETGGEDTIRKGIVDANLVD 367

Query: 389 AIVALPTDLFFRTNIATYLWILS-----NRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            IV LP  LF+ T I   +WIL      +R+  +   ++  I+A+ L  S+    +  R 
Sbjct: 368 CIVTLPDRLFYSTPIPAGIWILRRGRDFDREVNKPNREILFIDASRLGKSVT---RTHRE 424

Query: 444 INDDQRRQILDIY 456
           + DD   +I   Y
Sbjct: 425 LTDDDLERIACTY 437


>gi|240146118|ref|ZP_04744719.1| type I restriction-modification system, M subunit [Roseburia
           intestinalis L1-82]
 gi|257201771|gb|EEV00056.1| type I restriction-modification system, M subunit [Roseburia
           intestinalis L1-82]
          Length = 477

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 125/296 (42%), Gaps = 58/296 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N+YE L+ +  +E   GA  + TPR ++ + T L+           P +     DP C
Sbjct: 122 LGNLYEGLLEKNANEKKSGAGQYFTPRVLIDVMTKLM----------KPQVGERCNDPAC 171

Query: 215 GTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           GT GF+  A  +VA+   +          K        G EL  +TH + +   ++    
Sbjct: 172 GTFGFMIAAHQYVAERTDNFFDIADADLAKFEKEEAFTGCELVHDTHRLALMNAML---- 227

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFH---YCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                D++  I  G TLS     GK  H     L+NPPFG K            K GE  
Sbjct: 228 ----HDIAAPITLGDTLSN---IGKSMHDYDLVLTNPPFGTK------------KGGERA 268

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S+  + FL H+   L+   NG  RAA+VL  + LF    G GE +IR  LL
Sbjct: 269 TRDDFTYPTSNKQLNFLQHIYRSLK--NNGKARAAVVLPDNVLF--ADGDGE-KIRLDLL 323

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT-SIRNE 437
           +   +  I+ LPT +F+   + T ++  +       RGK    N  ++W   +RN+
Sbjct: 324 DKCNLHTILRLPTGIFYAQGVKTNVFFFT-------RGKTDKGNTKEVWIYDLRND 372


>gi|187927550|ref|YP_001898037.1| type I restriction-modification system, M subunit [Ralstonia
           pickettii 12J]
 gi|187724440|gb|ACD25605.1| type I restriction-modification system, M subunit [Ralstonia
           pickettii 12J]
          Length = 537

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 170/386 (44%), Gaps = 59/386 (15%)

Query: 102 SYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTVPD 152
           SYI   SF+   + +F + + +S     +K G  Y     ++CK    I   L   +   
Sbjct: 125 SYIETESFASTFRGLFSEINLAS-----DKLGKTYAERNARLCKIIKEIADGLKQFSTDS 179

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
             + + YE+LI +F +   + A +F TP+ +  + +A++ LD  +    +   + R + D
Sbjct: 180 DTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDRVM-D 238

Query: 212 PTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
             CG+G  L +  + + +  G+  KI      +GQE    T+ +    ML+  +     +
Sbjct: 239 LACGSGSLLLNVRHRMKEAKGTIGKI------YGQEKNITTYNLARMNMLLHGV-----K 287

Query: 271 DLSKNIQQGSTLSK--DLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           D    I  G TL    D+          +F   ++NPPF  +WE  +         GE  
Sbjct: 288 DSEFEIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEAL-------GEDV 340

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   S     FL+H    L+      G  AI+L    LF G A   E+ IR  L
Sbjct: 341 RFKNYGLAPKSAADFAFLLHGFQFLK----QDGVMAIILPHGVLFRGGA---EARIRTKL 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +     +GK++
Sbjct: 394 LKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF----EKGKRQ 446

Query: 442 RIINDDQRRQILDIYVSR-ENGKFSR 466
             I  +   +I+D Y  R E  ++SR
Sbjct: 447 NQILPEHIDKIIDTYQFRKEEARYSR 472


>gi|254234630|ref|ZP_04927953.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719]
 gi|126166561|gb|EAZ52072.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719]
          Length = 519

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 34/293 (11%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L P  +       +YE+ +  F  +  +    F TP  +V L   ++           P 
Sbjct: 135 LGPVDLSGDAFGKVYEYFLGNFALKEGQKGGVFYTPESIVKLIVEII----------EPF 184

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRR 263
             R ++DP CG+GG    + + V     HHK     +   G E E  T  +    + +  
Sbjct: 185 HGR-IFDPACGSGGMFAQSADFVK---RHHKTAMEEISIFGTEKEQVTVNLNKMNLAVHG 240

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L  D R   +        +++D   G RF + ++NPPF      +   V+KE   G+L R
Sbjct: 241 LSGDVRIANTYYEDPHEAVTRD---GGRFDFVMANPPF------NVSGVDKERLEGDL-R 290

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F  G+PK  + + L++      L    N  GRA  V+++S    G A   E  IR+ L+E
Sbjct: 291 FPFGVPKTDNANYLWIQLFYASL----NQNGRAGFVMANSA---GDARGSEQVIRQKLIE 343

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWIL--SNRKTEERRGKVQLINATDLWTSI 434
           +  ++ IV++ ++ F+   +   LW    +  +  ER  KV  I+A  ++  I
Sbjct: 344 SGAVDVIVSVGSNFFYTVTLPCTLWFFDRAKERDAERADKVLFIDARHIYRQI 396


>gi|224282780|ref|ZP_03646102.1| putative type I restriction-modification system methyltransferase
           subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313139939|ref|ZP_07802132.1| type I restriction-modification system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132449|gb|EFR50066.1| type I restriction-modification system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 524

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 110/504 (21%), Positives = 205/504 (40%), Gaps = 78/504 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRSAVREKYL 60
            ++   A  L+  +W  A DL G+   T F   IL     R L E   +  +  ++E  L
Sbjct: 5   AKYQAQAGELSQKLWAIANDLRGNMDSTKFRNYILGTIFYRYLSERTKDYMQEILKEDGL 64

Query: 61  AFGGSNIDLESFVKVAGYSF-----------------------------YNTSEYSLST- 90
            +  +  D +    V  +S                              +N  +Y  +  
Sbjct: 65  TYEQAFADDDYRPVVEQWSIEHLGYIIRPENLFGELVRKIVRPDGDADRFNVEDYERAVN 124

Query: 91  --LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             +GST  + +  ++   F+D      +D D   T+A   +  L+ K+    S I+    
Sbjct: 125 ELIGSTMGQASEAAFSGLFNDMK---LQDPDLGDTVA--ARTSLIAKVIVKISEIDFKLA 179

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIR 207
                V+   Y  LI  F S+  + + +F TP     L AT   +  D+A         R
Sbjct: 180 DSQFDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA---------R 230

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ D TCG+   L +   H+      H        +GQE    T+ +    ML+  ++  
Sbjct: 231 TVGDCTCGSASMLLEVQKHLTTGRVGHF-------YGQENNATTYNLARMNMLMHGVDYQ 283

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                  +I +G TL +D +   +    + NPP+  K++ +   ++    +G        
Sbjct: 284 -----HFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDGNPALLDDPRYSG-----AGK 333

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DL 386
           LP  S     F+ H+   ++   +  GR A++L    LF G A   E  IR++++++ + 
Sbjct: 334 LPPKSHADYAFIEHMVYHMD---DNDGRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNR 387

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++A++ L  +LF  T+I   L +L +++     G V  I+A+  +      GK +  + D
Sbjct: 388 LDAVIGLAPNLFHGTSIPVCLLVLKSKRN-GNSGNVLFIDASKEFKP----GKNQNTLED 442

Query: 447 DQRRQILDIYVSREN-GKFSRMLD 469
              ++I++ Y +R +  KF+ + D
Sbjct: 443 AHIQKIVEAYKNRADVDKFAHVAD 466


>gi|262369882|ref|ZP_06063209.1| N-6 DNA methylase [Acinetobacter johnsonii SH046]
 gi|262314921|gb|EEY95961.1| N-6 DNA methylase [Acinetobacter johnsonii SH046]
          Length = 576

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 48/293 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 203 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------QPYKGR-VYDPA 251

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   +       +         +  +GQE  P T  +    M IR +    
Sbjct: 252 MGSGGFFVSSEKFIEQHAQEKRYKASEQKKHISIYGQESNPTTWKLAAMNMAIRGI---- 307

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP 326
             D +   +   +  +D     R  + ++NPPF  K  W     ++E +       R+  
Sbjct: 308 --DFNFGKKNADSFLEDQHPDLRADFVMANPPFNIKDWWHA---SLEND------VRWKY 356

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  ++ H+ +   L P G    A++L++  + +    + E EIR+ L+E DL
Sbjct: 357 GTPPQGNANFAWMQHMLH--HLSPTGS--MALLLANGSMSSNT--NNEGEIRKNLIEADL 410

Query: 387 IEAIVALPTDLFFRTNIATYLWILS---------NRKTEERRGKVQLINATDL 430
           +E IVALP  LF  T I   +W L+         ++K   R GK   I+A +L
Sbjct: 411 VECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLFIDARNL 463


>gi|220911869|ref|YP_002487178.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6]
 gi|219858747|gb|ACL39089.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6]
          Length = 543

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 133/312 (42%), Gaps = 46/312 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F     +   +F TP  VV +                P   R +YDP 
Sbjct: 179 LLGEVYEYFLEKFAKAEGKRGGEFYTPAGVVRVLVE----------VLEPHRGR-VYDPC 227

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   +    +H+     +  +GQEL   T  +    + I  L ++      
Sbjct: 228 CGSGGMFVQAEKFLE---AHNMEGSDISVYGQELNERTWRMAKMNLAIHGLNAN------ 278

Query: 274 KNIQQGSTLSKD----LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGL 328
              + G T ++D    L       + ++NPPF  K W + +             R+  G+
Sbjct: 279 LAARWGDTFARDQHPELTGNTGADFIMANPPFNIKVWSRSESDP----------RWKYGV 328

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  ++ H+ +KL   P  GG A +V+++  + +   G GE  IR  L+E DL+ 
Sbjct: 329 PPAGNANYAWIQHIISKL--AP--GGSAGVVMANGSMSSNSGGEGE--IRAQLVEADLVS 382

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRII 444
            +VALPT LF  T I    W  +  KT  ++G +       L+   RN G    +  R +
Sbjct: 383 CMVALPTQLFRSTGIPVCTWFFAKDKTAGKKGSIDRTGQV-LFIDARNLGYMVDRAERAL 441

Query: 445 NDDQRRQILDIY 456
           +D+   +I + Y
Sbjct: 442 SDEDITKIANTY 453


>gi|262375745|ref|ZP_06068977.1| type I restriction-modification system protein [Acinetobacter
           lwoffii SH145]
 gi|262309348|gb|EEY90479.1| type I restriction-modification system protein [Acinetobacter
           lwoffii SH145]
          Length = 920

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 154/341 (45%), Gaps = 58/341 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++        K+ P +   +YDPT
Sbjct: 164 VLGFIYEYLIGSFAANAGKKAGEFYTPHEVSVLMSEIIAH----YLKDQPEI--KIYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +  + VA    H      +  + QEL+  T+ +    +++R +   P   ++
Sbjct: 218 SGSGSLLINIGSSVA---KHVNDANKIKYYAQELKENTYNLTRMNLVMRGIL--PANIVA 272

Query: 274 KNIQQGSTLSKD-----------LFTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNG 319
           +N     TL  D            +        +SNPP+ + W+   KD D   KE    
Sbjct: 273 RN---ADTLEDDWPFFEDNDPINTYEPLYVDAVVSNPPYSQAWDPANKDADPRYKEF--- 326

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE-IR 378
                  GL   +     FL+H  +   L PNG    AIVL    LF G    GE E IR
Sbjct: 327 -------GLAPKTKADYAFLLH--DLYHLKPNG--IMAIVLPHGVLFRG----GEEERIR 371

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             L++ + I+AI+ LP ++FF T I T + IL   K +     V +++A+        +G
Sbjct: 372 TNLIKKNHIDAIIGLPANIFFGTGIPTVIIIL---KQQRPTTDVLIVDAS---KGFVKQG 425

Query: 439 KKRRIINDDQRRQILDIYVSREN-GKFSRML---DYRTFGY 475
           K   +   + ++ I+D  + R++  +FSR++   + R  GY
Sbjct: 426 KNNHLQASNIKK-IVDAVIERKDVEQFSRLVTQKEIRDQGY 465


>gi|322386251|ref|ZP_08059883.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus cristatus ATCC 51100]
 gi|321269713|gb|EFX52641.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus cristatus ATCC 51100]
          Length = 536

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 153/313 (48%), Gaps = 42/313 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND------QPSNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+  +    ++ +Y +SNPPF   + + +D VE   +  E  RF  G+PK+   S
Sbjct: 280 IVQGNTIIANRHP-EKMNYIVSNPPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKS 336

Query: 336 M-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                   LF+ H+   L+      G+AA+VL +  +    A SG +  IR+ L++N ++
Sbjct: 337 KDKMAIYELFVQHIIYSLK----SDGQAAVVLPTGFI---TAQSGIDKAIRQHLVDNQML 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ +
Sbjct: 390 AGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPE 445

Query: 448 QRRQILDIYVSRE 460
           + ++I++ ++ +E
Sbjct: 446 EEQKIVETFIKKE 458


>gi|150388683|ref|YP_001318732.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149948545|gb|ABR47073.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 472

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 47/332 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +S + + +E+   L KI  +   ++ +  +  +  + N+YE L+ +  +E   GA  + T
Sbjct: 89  YSGSRSNIEEPKNLEKIITSIDALDWY--SAKEEGLGNLYEGLLEKNANEKKSGAGQYFT 146

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------- 231
           PR ++++ T L+          +P       DP CGT GF+  A  +V D          
Sbjct: 147 PRVLINIMTQLI----------APQAGEKCNDPACGTFGFMIAADRYVKDHTDDLFDLSL 196

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  +TH + +   ++         D+   I    TLS      K 
Sbjct: 197 KEQEFQKNKAFTGCELVHDTHRLALMNAML--------HDIEGKILYADTLSNLGKAMKD 248

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K            K GE           S+  + FL H+   L+   N
Sbjct: 249 FDVVLTNPPFGTK------------KGGERTTRDDLTYPSSNKQLNFLQHIYRSLK--TN 294

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+VL  + LF    G G S IR  L++   +  ++ LPT +F+   + T +   +
Sbjct: 295 GKSRAAVVLPDNVLF--ADGDGAS-IRADLMDKCNLHTVLRLPTGIFYAQGVKTNVLFFT 351

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             KTE+   K   +   DL T++++ GK + +
Sbjct: 352 RGKTEKNNTKEVWV--YDLRTNMQSFGKTKAL 381


>gi|319946655|ref|ZP_08020889.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus australis ATCC 700641]
 gi|319746703|gb|EFV98962.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus australis ATCC 700641]
          Length = 457

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 187/392 (47%), Gaps = 48/392 (12%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +FY T E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   
Sbjct: 103 TFYETFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKSII 159

Query: 139 NFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           N        +T+  +     S ++E++I+ +  +      ++ TP  V  +   +L+  D
Sbjct: 160 NLLTRIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGDD 219

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                  P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  + 
Sbjct: 220 ------KPQNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLL 264

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              +++  L+         NI QG+T++ +    ++  Y +SNPPF   + + +D VE  
Sbjct: 265 RLNLILNGLQHSIH-----NIVQGNTITANRHP-EKMDYIVSNPPFKLDFSEWRDQVETL 318

Query: 316 HKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +  E  RF  G+PK+   S        LF+ H+     L P+  G+AA+VL +  +   
Sbjct: 319 PEASE--RFFAGVPKVPAKSKDKMAIYELFVQHII--YSLKPD--GQAAVVLPTGFI--- 369

Query: 369 RAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
            A SG +  IR+ L++N ++  +V++P+++F  T     +  +  +     +G V LI+A
Sbjct: 370 TAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDA 425

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           ++L T ++    ++ +++ ++ ++I++ ++ +
Sbjct: 426 SNLGTKVKEGKNQKTVLSPEEEQKIVETFIKK 457


>gi|268323783|emb|CBH37371.1| putative type I restriction enzyme, N-6 DNA methylase family
           [uncultured archaeon]
          Length = 452

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 117/263 (44%), Gaps = 29/263 (11%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE L+ +   +V  GA  + TPR ++ +A    + P       +PG  +T+ DP CGTG
Sbjct: 130 IYEGLLEKNAEDVKSGAGQYFTPRALI-MAMVECIHP-------APG--KTICDPACGTG 179

Query: 218 GFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GF   + + + +  ++       +        G E+      +C+  M +  +      D
Sbjct: 180 GFFLASYDFLCNPANYRLDKEQKEFLKDRTFSGNEIVASARRMCLMNMFLHNI---GEID 236

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPK 330
               I    +L  D  +G R+ Y L+NPPFGKK        E K+ K   +         
Sbjct: 237 AESPISSADSLVSD--SGARYDYVLTNPPFGKKSSMTFTTEEGKQEKENLVYNRQDFWAT 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+  + FL H+   L+      G AA+VL  + LF G  G+GE+ +R+ +LE   +  I
Sbjct: 295 TSNKQLNFLQHIHTLLK----SDGHAAVVLPDNVLFEG--GAGET-VRKNMLETTNLHTI 347

Query: 391 VALPTDLFFRTNIATYLWILSNR 413
           + L T +F++  +   +    N+
Sbjct: 348 LRLSTGIFYKQGVKANILFFDNK 370


>gi|224826952|ref|ZP_03700050.1| type I restriction-modification system, M subunit [Lutiella
           nitroferrum 2002]
 gi|224600785|gb|EEG06970.1| type I restriction-modification system, M subunit [Lutiella
           nitroferrum 2002]
          Length = 544

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 221/528 (41%), Gaps = 111/528 (21%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECA--------- 47
           MT+F      L N +W  A+ L G     DF   +L F  LR L    E A         
Sbjct: 1   MTDF--EKQKLGNTLWTIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGADY 58

Query: 48  --LEPTRSAVREKYLAF--GGSNIDLESFVKVA----------GYSFYNTSEYS------ 87
             LEP     R   L+F    + +D+  F K             Y + N +E +      
Sbjct: 59  PELEPED---RLSPLSFWYADNAVDVPEFEKQMRRKVHYVIEPQYLWGNIAEMARTQDDE 115

Query: 88  -LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFS 141
            LSTL S       ES+ ++F    + +F + + +S     +K G  Y     ++CK  +
Sbjct: 116 LLSTLQSGFKYIEEESFASTF----RGLFSEINLAS-----DKLGKTYAERNARLCKIIA 166

Query: 142 GIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDD-A 197
            I   L   +     + + YE+LI +F +   + A +F TP+ +  + +A++ LD  + A
Sbjct: 167 EIAKGLGQFSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPA 226

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K S   + ++ D  CG+G  L +  + +      H I  I   HGQE    T+ +   
Sbjct: 227 TGKRS--HLDSVLDFACGSGSLLLNVRHRMGP----HGIGKI---HGQEKNITTYNLARM 277

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDK 309
            ML+  +     +D   +I  G TL  +    +        +F   ++NPPF  +WE  +
Sbjct: 278 NMLLHGV-----KDSEFDIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSE 332

Query: 310 DAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                    GE  RF   GL   S     FL+H  + L+      G  AI+L    LF G
Sbjct: 333 AL-------GEDTRFKNYGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRG 381

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            A   E+ IR  LL +  I+ ++ LP +LFF T I   + +L   K  +    V  INA 
Sbjct: 382 GA---EARIRTKLLNDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAA 435

Query: 429 DLWTSIRNEGKKR-RIINDDQR--------RQILDIYVSR-ENGKFSR 466
           + +     +GK++ +++  D+          +I+D Y  R E  ++SR
Sbjct: 436 EHF----EKGKRQNQLLRTDEMPSGGIGHIEKIIDTYQYRKEEPRYSR 479


>gi|223040255|ref|ZP_03610533.1| type I restriction-modification system, M subunit [Campylobacter
           rectus RM3267]
 gi|222878508|gb|EEF13611.1| type I restriction-modification system, M subunit [Campylobacter
           rectus RM3267]
          Length = 598

 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 46/325 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDP 212
           ++ N YE+LI +F +   + A +F TP+ + + L+  ++LD       +    I  L D 
Sbjct: 243 LLGNAYEYLIGQFAAGSGKKAGEFYTPQQISNILSRIVILDSHKPELGKR-DFINNLLDF 301

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +   H+      + I  I   +GQE    T+ +    ML+        +D 
Sbjct: 302 ACGSGSLLINVKKHL----EPNSISQI---YGQEKNITTYNLARMNMLLHGF-----KDS 349

Query: 273 SKNIQQGSTLSKD------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              I  G +L  D      +   K+      ++NPPF  +WE D    E         RF
Sbjct: 350 EFQIFHGDSLLNDWSLLNEMNPAKKLECDAVVANPPFSYRWEPDDTLAED-------FRF 402

Query: 325 GP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR  LL+
Sbjct: 403 KSYGLAPKSAADFAFLLHGFHFL----SKNGTMAIILPHGVLFRGGA---EEKIRTKLLK 455

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+A++ LP +LFF T I   + +L   K  +    V  INA++ +     +GK++ +
Sbjct: 456 DGNIDAVIGLPANLFFSTGIPVCILVLKKCKEPD---DVLFINASEYYE----KGKRQNV 508

Query: 444 INDDQRRQILDIYVSR--ENGKFSR 466
           +  +   +I++ Y  R  ++ ++SR
Sbjct: 509 LLPEHIDKIVETYQFRREDDKRYSR 533


>gi|295402726|ref|ZP_06812667.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975225|gb|EFG50862.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 485

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 46/272 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +MS++YE L+++ G +     E F TPR VV     ++           P + +T+YDP 
Sbjct: 148 IMSHLYESLLQKMGDDGGNSGE-FYTPRPVVRFMVEMI----------DPQVGKTVYDPA 196

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGT GFL ++  H+    +  +   IL     +GQE  P  + + +  ML+  ++    R
Sbjct: 197 CGTCGFLVESYEHMKKQANTPEKVKILAEKTFYGQEKTPLAYLLGLMNMLLHGIDYPQIR 256

Query: 271 D---LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               L++NI       +++   +++ Y L+NPPFG K +K    ++K             
Sbjct: 257 KTNTLNQNI-------REIDESQKYDYILANPPFGGKEQK---IIQK------------N 294

Query: 328 LPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            P  +  + +LFL ++   L+      G+A ++L    LF  R       ++  LL+   
Sbjct: 295 FPVEAQATELLFLQYIMKTLKF----DGKAGVILPEGVLF--RTNEAYKTVKEELLQKFN 348

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +  IV+LP  +F   +      I  +R T  +
Sbjct: 349 VHTIVSLPAGVFLPYSAVKTSIIFFDRTTSTK 380


>gi|218439053|ref|YP_002377382.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218171781|gb|ACK70514.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 509

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 41/249 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S+ YE+L++R GSE ++ A +F TPR V+     ++           P +  T+YDP 
Sbjct: 160 TVSHTYENLLQRLGSE-NKMAGEFYTPRPVIRFMVEVI----------DPKIGETVYDPA 208

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRR 270
           CGT GFL  A  ++       +   IL  H   GQE +P    +    M++  +      
Sbjct: 209 CGTCGFLVAAYEYMKQWEQTIRDRDILQRHTFFGQEKKPLPALLGTMNMVLHGV------ 262

Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            L  +IQ+ +TL +D  T  K++   L+NPPFG K            +N ++ +  P   
Sbjct: 263 -LVPDIQRKNTLEEDTRTAIKKYDIILTNPPFGGK------------ENKQIQKNFPVSA 309

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             ++  +LFL H+  KL+   N   R  +V+    LF  R+G+  + ++ WLL +  +  
Sbjct: 310 NATE--LLFLEHIIKKLKTDDN--ARCGMVVPEGTLF--RSGAFGT-VKEWLLNDFNLVM 362

Query: 390 IVALPTDLF 398
           +V+LP   F
Sbjct: 363 VVSLPPGTF 371


>gi|282865862|ref|ZP_06274911.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282559186|gb|EFB64739.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 886

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 175/454 (38%), Gaps = 67/454 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGS 65
           A L   ++  A+ L G    +++   I     L+R     E  R  ++E+      F G 
Sbjct: 7   AQLERHLFAAADILRGTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAKRDWGFDGE 66

Query: 66  NID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKAIFE 116
            +D  LE              E +     S  TRN  ES +          ++    +F+
Sbjct: 67  ELDAFLEQEAPYRERDVLFVPEKARWHEISGVTRNINESVLRPALQLLEGQNEKLTGLFD 126

Query: 117 DFDFSSTIARLEKAGL-------LYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFG 167
             DF+        AG        L  +  +F  + L  D    PD ++   YE+LI+ F 
Sbjct: 127 HLDFNRIGGSGAAAGTATLADKRLELLIAHFGRVRLRTDDFEFPD-LIGAAYEYLIKEFA 185

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
                   +F TPR VV +   LL          +P     +YDP  G+GG L  A  +V
Sbjct: 186 DSAGRKGGEFYTPRAVVRMMVELL----------APTQGMRIYDPCVGSGGMLIHAAEYV 235

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            + G        +   GQ+    +  +    M++  +    R DL+     G TL++   
Sbjct: 236 EEHGGDTSD---MFFAGQDANSGSWIMSTMNMVLHGVR---RFDLT----TGDTLARPTH 285

Query: 288 T----GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  RF   LSNPPF      D  A +  H+  E   +G    +     ++FL H+ 
Sbjct: 286 IPTSDADRFDGVLSNPPFSM----DYTATDLAHRT-ERTYYGLTSER-GKADLMFLQHML 339

Query: 344 NKLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              E    G GG    V+    LF G    GE +IR  LL+ D +EA++ L  +LF+ T 
Sbjct: 340 --WETKKEGRGGMVITVMPHGVLFRG---GGEQQIRTKLLDEDAVEAVIGLAPNLFYGTG 394

Query: 403 IATYLWIL---------SNRKTEERRGKVQLINA 427
           I   + +L          + +  ER GKV  INA
Sbjct: 395 IPACILVLRPPGCKGRDRSEREPERAGKVLFINA 428


>gi|149189420|ref|ZP_01867705.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1]
 gi|148836778|gb|EDL53730.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1]
          Length = 504

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 136/318 (42%), Gaps = 51/318 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++Y A    N +       FS     ++   LL ++    + I+   D+    +  +IY
Sbjct: 90  LKNYAAPIDKNPRGFVAKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSNERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V       L           P +  ++ DP  GTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAVTRFIVNRL----------DPKLGESIMDPATGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  + +HV +        H  +   +  HG E +   H +C+  M++  +E      +  
Sbjct: 197 LACSFDHVKNNYVKTAADHQTLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K L +     +   +NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPN--GGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAI 390
            + LFL  +   L+   +   GGRA +VL    LF    G G +++I++ L E   +  I
Sbjct: 297 TADLFLQLIIEVLDEGSDTKSGGRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTI 352

Query: 391 VALPTDLF-----FRTNI 403
           V LP  +F      +TNI
Sbjct: 353 VRLPNGVFNPYTGIKTNI 370


>gi|224417842|ref|ZP_03655848.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253827182|ref|ZP_04870067.1| type I restriction-modification system methyltransferase subunit
           [Helicobacter canadensis MIT 98-5491]
 gi|313141384|ref|ZP_07803577.1| type I restriction-modification system [Helicobacter canadensis MIT
           98-5491]
 gi|253510588|gb|EES89247.1| type I restriction-modification system methyltransferase subunit
           [Helicobacter canadensis MIT 98-5491]
 gi|313130415|gb|EFR48032.1| type I restriction-modification system [Helicobacter canadensis MIT
           98-5491]
          Length = 596

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 164/358 (45%), Gaps = 53/358 (14%)

Query: 136 ICKNFSGIELHPDTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-L 192
           +C+  + I       P+   ++ + YE+LI +F +   + A +F TP+ V  + + ++ L
Sbjct: 221 LCQVITEIAQGLSKFPNETDLLGDAYEYLIGQFAAGSGKKAGEFYTPQQVSTILSRIVSL 280

Query: 193 DPDD-ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           D  D +  K+S   ++ + D  CG+G  L +           + I  I   +GQE    T
Sbjct: 281 DSQDPSTGKKSK--LKNILDFACGSGSLLINVRKQFG----ANSIGQI---YGQEKNITT 331

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGK 303
           + +    ML+  +     +D    I  G +L  D      +   K+  F   ++NPPF  
Sbjct: 332 YNLARMNMLLHGV-----KDSEFQIHHGDSLLNDWNILNEMNPAKKMQFEVVVANPPFSY 386

Query: 304 KWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+  ++  E         RF   GL   S     FL+H  + L    +  G  AI+L  
Sbjct: 387 RWQPKEEMAED-------FRFKNYGLAPKSAADFAFLLHGFHFL----SDDGTMAIILPH 435

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G     E +IR  LLE+  I+AI+ LP +LFF T I   + +L   K  ++   V
Sbjct: 436 GVLFRGGV---EEKIRTKLLEDGNIDAIIGLPANLFFSTGIPVCVLVL---KKCKKYDDV 489

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSR---MLDYRTFGY 475
            +INA++ +     +GK++ I+  +   +I++ Y  R  ++ K+SR   M + +  GY
Sbjct: 490 LIINASEYFE----KGKRQNILLPEHIDKIIETYQYRKEDDKKYSRRVSMKEIKKNGY 543


>gi|119471838|ref|ZP_01614171.1| N-6 DNA methylase [Alteromonadales bacterium TW-7]
 gi|119445328|gb|EAW26617.1| N-6 DNA methylase [Alteromonadales bacterium TW-7]
          Length = 698

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 51/317 (16%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++ K FS I   P      ++  IYE  + +F     +G   F TP  VV L   ++ +P
Sbjct: 141 QLLKTFSDI---PRDATGDILGKIYEFFLGKFALAEGQGGGVFYTPTSVVRLMVEVI-EP 196

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-------CGSHHKIPPILVPHGQEL 247
                        T++DP CG+ G    +   + D        G  H    + V +GQE 
Sbjct: 197 YKG----------TVFDPACGSAGMFVQSQQFIEDHNEELDLLGEKHDENKLFV-YGQEK 245

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWE 306
             +T  +    + +  L  +        I+Q ++  ++ F   ++F Y L+NPPF     
Sbjct: 246 TLDTVKLAKMNIAVNGLRGE--------IKQANSYKENPFDSYQKFDYVLANPPFNVDDV 297

Query: 307 KDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
              D VE + +  E G         +   G   + +G+ L++   A  L+      GRAA
Sbjct: 298 PVAD-VEDDIRFNEYGIPKKKTKAKKKDEGKETVPNGNYLWINLFATSLK----EKGRAA 352

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+++S      A   E++IR+ L+EN+LI  ++ LP+++F+   +   LW     K ++
Sbjct: 353 LVMANSA---SDARHSEADIRQTLIENNLIYGMLTLPSNMFYTVTLPATLWFFDKDKQDD 409

Query: 418 RRGKVQLINATDLWTSI 434
               +  I+A +++T +
Sbjct: 410 N---ILFIDARNVFTQV 423


>gi|315612674|ref|ZP_07887586.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
 gi|315315261|gb|EFU63301.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
          Length = 534

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 187/393 (47%), Gaps = 48/393 (12%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +FY T E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   
Sbjct: 103 TFYETFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKAII 159

Query: 139 NFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           N        +T+  +     S ++E++I+ +  +      ++ TP  V  +   +L+  D
Sbjct: 160 NLLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND 219

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                  P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  + 
Sbjct: 220 ------QPSNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLL 264

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              +++  L+         NI QG+T+  +    ++  Y +SNPPF   + + +D VE  
Sbjct: 265 RLNLILNGLQHSIH-----NIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETL 318

Query: 316 HKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +  E  RF  G+PK+   S        LF+ H+     L P+  G+AA+VL +  +   
Sbjct: 319 PEASE--RFFAGVPKVPAKSKDKMAIYELFVQHII--YSLKPD--GQAAVVLPTGFI--- 369

Query: 369 RAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
            A SG +  IR+ L++N ++  +V++P+++F  T     +  +  +  ++    V LI+A
Sbjct: 370 TAQSGIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKKNKDD----VVLIDA 425

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           ++L T ++    ++ +++ ++ ++I++ ++ +E
Sbjct: 426 SNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKE 458


>gi|298292635|ref|YP_003694574.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya
           novella DSM 506]
 gi|296929146|gb|ADH89955.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya
           novella DSM 506]
          Length = 482

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 136/306 (44%), Gaps = 36/306 (11%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P  V  +IYE L+ R   +V  GA  + TPR V+  A   ++DP+           +T+
Sbjct: 120 LPVDVKGDIYEGLLARNAEDVKSGAGQYFTPRAVID-AMVEVVDPEPQ---------QTV 169

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLE 265
           +DP CGT GFL  A  H+            L       G ++ PE   +    + +  + 
Sbjct: 170 HDPACGTAGFLLAAWEHMKKHPRAQDKATYLALKNKFSGVDIVPEVVRLAAMNLYLHGIT 229

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE----KDKDAVEKEHKNGEL 321
                  +K+   G+        GK +   L+NPPFG+K      +D   ++ E ++ + 
Sbjct: 230 GVDSIVEAKDALLGAG-------GKSYDIILTNPPFGRKQSYRIVRDDGEIDNEREDYDR 282

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F       S+  + FL H+   L   P+  G AA+VL  + LF G  G+GE+ IRR L
Sbjct: 283 QDF---FVTTSNKQLNFLQHIMTVLA--PD--GEAAVVLPDNVLFEG--GAGET-IRRRL 332

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L N     ++ LPT +F++  +   + +  ++K        + +   DL T+ R   K+R
Sbjct: 333 LRNFDFHTLLRLPTGIFYKQGVKANV-LFFDKKPPSDEAATRDLWIYDLRTNQRFTLKER 391

Query: 442 RIINDD 447
            ++  D
Sbjct: 392 PMVRAD 397


>gi|254181647|ref|ZP_04888244.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 1655]
 gi|184212185|gb|EDU09228.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 1655]
          Length = 537

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 207/503 (41%), Gaps = 86/503 (17%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR--------------SAVR 56
           L   +W  A+ L G     DF   +L F  LR L    E                 S   
Sbjct: 9   LGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGPDYPQQIDGSVST 68

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLGSTNTRNNLE------SYI- 104
              L + G+ ID+  F K      +   E      +++ +  T     L+      SYI 
Sbjct: 69  PLQLWYEGNLIDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAALLKTLQRGFSYIE 128

Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTVPDRVMS 156
             SF+   + +F + + +S     +K G  Y     ++CK    I   L   +     + 
Sbjct: 129 NESFASTFRGLFSEINLAS-----DKLGKTYVERNTRLCKIIKEIADGLKQFSTDSDTLG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDD-ALFKESPGMIRTLYDPTC 214
           + YE+LI +F +   + A +F TP+ +  + +A++ LD  + A  K S   + ++ D  C
Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSN--LDSVMDLAC 241

Query: 215 GTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           G+G  L +  + + +  G+  KI      +GQE    T+ +    ML+  +     +D  
Sbjct: 242 GSGSLLLNVRHRMKEAKGTIGKI------YGQEKNITTYNLARMNMLLHGV-----KDSE 290

Query: 274 KNIQQGSTLSK--DLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF- 324
             I  G TL    D+          +F   ++NPPF  +WE  +   E         RF 
Sbjct: 291 FEIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEALSEDV-------RFK 343

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GL   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL++
Sbjct: 344 NYGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLLKD 396

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ ++ LP +LFF T I   + +L   K  +    V  INA + +     +GK++  I
Sbjct: 397 GHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF----EKGKRQNQI 449

Query: 445 NDDQRRQILDIYVSR-ENGKFSR 466
             +   +I+D Y  R E  ++SR
Sbjct: 450 LPEHIDKIIDTYQFRKEEARYSR 472


>gi|153824557|ref|ZP_01977224.1| type I restriction-modification system, M subunit [Vibrio cholerae
           MZO-2]
 gi|149741775|gb|EDM55804.1| type I restriction-modification system, M subunit [Vibrio cholerae
           MZO-2]
          Length = 496

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 132/316 (41%), Gaps = 53/316 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+   D+    +  +IY
Sbjct: 90  LKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   S  + G  +F TPR V       L           P +   + DP CGTGGF
Sbjct: 149 EQILRDLQSAGNAG--EFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +C+  M++  +E      +  
Sbjct: 197 LACAFDHVKENYVTSAADHQTLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K L       +   +NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L+      GRA +VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLD----KNGRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVR 348

Query: 393 LPTDLF-----FRTNI 403
           LP  +F      +TNI
Sbjct: 349 LPNGVFNPYTGIKTNI 364


>gi|301633155|gb|ADK86709.1| type I restriction-modification system, M subunit [Mycoplasma
           pneumoniae FH]
          Length = 543

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 53/374 (14%)

Query: 112 KAIFEDFDFS-----STIA-RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           K +F+DF+ S     ST+  R EK   L          E   +++      + YE LI  
Sbjct: 140 KGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFEKNSID--AFGDAYEFLISM 197

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +     +   +F TP+DV  L   + +   D         +  +YD  CG+G  L   + 
Sbjct: 198 YAQNAGKSGGEFFTPQDVSELLARIAIGKKDT--------VDDVYDMACGSGSLLLQVIK 249

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284
            +       +   ++  +GQE+   T+ +C   M++  ++       + NI    TL+  
Sbjct: 250 VLG-----KEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-----ANFNIINADTLTTK 299

Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDA-VEKEHKNGELGRFGPGLPKISDGSM 336
                  +      F   +SNPP+   W  DK + +  + +  + G   P     S   +
Sbjct: 300 EWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPN----SKADL 355

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L       G AAIV     L+  R G  E  IR++L++ + ++A++ LP++
Sbjct: 356 AFVLHALYVL----GQEGTAAIVCFPGILY--REGK-EQTIRKYLVDQNFVDAVIQLPSN 408

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF  T+IAT + +L  +K  +++  +  I+ ++ +       KK   ++     +I+D +
Sbjct: 409 LFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFV----REKKNNRLSPKNIEKIVDCF 462

Query: 457 VS-RENGKFSRMLD 469
            S +E   F++ ++
Sbjct: 463 NSKKEEANFAKAVE 476


>gi|327490536|gb|EGF22317.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1058]
 gi|332362946|gb|EGJ40735.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK49]
          Length = 534

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 153/313 (48%), Gaps = 42/313 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND------QPSNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+  +    ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK+   S
Sbjct: 280 IVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKS 336

Query: 336 M-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                   LF+ H+     L P+  G+AA+VL +  +    A SG +  IR+ L++N ++
Sbjct: 337 KDKMAIYELFVQHII--YSLKPD--GQAAVVLPTGFI---TAQSGIDKTIRQHLVDNQML 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ +
Sbjct: 390 AGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPE 445

Query: 448 QRRQILDIYVSRE 460
           + ++I++ ++ +E
Sbjct: 446 EEQKIVETFIKKE 458


>gi|229542894|ref|ZP_04431954.1| N-6 DNA methylase [Bacillus coagulans 36D1]
 gi|229327314|gb|EEN92989.1| N-6 DNA methylase [Bacillus coagulans 36D1]
          Length = 476

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 47/332 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +S     + +   L KI K+   ++ +  +  +  + N+YE L+ +  SE   GA  + T
Sbjct: 89  YSDAATSISEPKNLEKIIKSIDALDWY--SAKEEGLGNLYEGLLEKNASEKKSGAGQYFT 146

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPP 238
           PR ++ +   L+           P +     DP  GT GF+  A  ++      +  + P
Sbjct: 147 PRVLIDVMVQLV----------DPKIGERCADPAAGTFGFMIAADRYLKQQTDDYFDLDP 196

Query: 239 ILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +          G EL  +TH + +   L+  +E          I+ G +LS +    K 
Sbjct: 197 QMAEFQRKEAFSGMELVKDTHRLALMNALLHSMEG--------RIEHGDSLSNNGKWMKN 248

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG K            K GE           S+  + FL  + N L+   +
Sbjct: 249 LDVILTNPPFGTK------------KGGERVSRDDLTFDTSNKQLNFLQLIYNALK--DD 294

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+VL  + LF    G   ++IRR L+    +  I+ LPT +F+   + T +   +
Sbjct: 295 GKARAAVVLPDNVLFESGVG---AQIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFT 351

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             KT+  R   + +   DL T++ + GK+ ++
Sbjct: 352 RGKTD--RDNTKEVWVYDLRTNMPSFGKRNQL 381


>gi|284800797|ref|YP_003412662.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5578]
 gi|284993983|ref|YP_003415751.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5923]
 gi|284056359|gb|ADB67300.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5578]
 gi|284059450|gb|ADB70389.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5923]
          Length = 529

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 141/318 (44%), Gaps = 50/318 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S+IYE+L+ +F + ++     + TP+++ ++   +L    + + K S      ++DPT
Sbjct: 167 TVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFS------IFDPT 220

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    +++ + G       ++  +GQE +   + +    +++  +E +      
Sbjct: 221 VGSGSLLLTTASYMKNSGRR----GVIKYYGQEKDATPYRLSRMNLMMHGIEYN-----D 271

Query: 274 KNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELG 322
            NI    TL  D   G        + F   ++NPP+   W   +++ D   +E+      
Sbjct: 272 ININHADTLESDWPDGVVEGKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREY------ 325

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   +     FL+H    LE      GR AI+L    LF G   + E  IR+ L+
Sbjct: 326 ----GVSPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRG---ASEGRIRKALI 374

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   IEAI+  P  LF  T+I   + IL   + E     +  ++A+  +  I    KK+ 
Sbjct: 375 DKHQIEAIIGFPDKLFLNTSIPVCVVILRKNRIE---SDILFVDASKGFEKI----KKQN 427

Query: 443 IINDDQRRQILDIYVSRE 460
            +  +   +I+D  ++R+
Sbjct: 428 NLRSEDVEKIVDTVINRK 445


>gi|325686956|gb|EGD28980.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK72]
          Length = 534

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 151/313 (48%), Gaps = 42/313 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND------QPSNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+  +    ++  Y +SNPPF   + + +D VE      E  RF  G+PK+   S
Sbjct: 280 IVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETLLDASE--RFFAGVPKVPAKS 336

Query: 336 M-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                   LF+ H+   L+      G+AA+VL +  +    A SG +  IR+ L++N ++
Sbjct: 337 KDKMAIYELFVQHIIYSLK----SDGQAAVVLPTGFI---TAQSGIDKAIRQHLVDNQML 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ +
Sbjct: 390 AGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPE 445

Query: 448 QRRQILDIYVSRE 460
           + ++I++ ++ +E
Sbjct: 446 EEQKIVETFIKKE 458


>gi|327472745|gb|EGF18172.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK408]
          Length = 534

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 152/313 (48%), Gaps = 42/313 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND------QPSNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+  +    ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK+   S
Sbjct: 280 IVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDRVETLPEASE--RFFAGVPKVPAKS 336

Query: 336 M-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                   LF+ H+   L+      G+AA+VL +  +    A SG +  IR+ L++N ++
Sbjct: 337 KDKMAIYELFVQHIIYSLK----SDGQAAVVLPTGFI---TAQSGIDKAIRQHLVDNQML 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ +
Sbjct: 390 AGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPE 445

Query: 448 QRRQILDIYVSRE 460
           + ++I++ ++ +E
Sbjct: 446 EEQKIVETFIKKE 458


>gi|16799597|ref|NP_469865.1| hypothetical protein lin0522 [Listeria innocua Clip11262]
 gi|16412962|emb|CAC95754.1| lin0522 [Listeria innocua Clip11262]
          Length = 529

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 141/318 (44%), Gaps = 50/318 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S+IYE+L+ +F + ++     + TP+++ ++   +L    + + K S      ++DPT
Sbjct: 167 TVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFS------IFDPT 220

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    +++ + G       ++  +GQE +   + +    +++  +E +      
Sbjct: 221 VGSGSLLLTTASYMKNSGRR----GVIKYYGQEKDATPYRLSRMNLMMHGIEYN-----D 271

Query: 274 KNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELG 322
            NI    TL  D   G        + F   ++NPP+   W   +++ D   +E+      
Sbjct: 272 ININHADTLESDWPDGVVDGKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREY------ 325

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   +     FL+H    LE      GR AI+L    LF G   + E  IR+ L+
Sbjct: 326 ----GVSPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRG---ASEGRIRKALI 374

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   IEAI+  P  LF  T+I   + IL   + E     +  ++A+  +  I    KK+ 
Sbjct: 375 DKHQIEAIIGFPDKLFLNTSIPVCVVILRKNRIE---SDILFVDASKGFEKI----KKQN 427

Query: 443 IINDDQRRQILDIYVSRE 460
            +  +   +I+D  ++R+
Sbjct: 428 NLRSEDVEKIVDTVINRK 445


>gi|90410147|ref|ZP_01218164.1| DNA methylase M, host modification [Photobacterium profundum 3TCK]
 gi|90329500|gb|EAS45757.1| DNA methylase M, host modification [Photobacterium profundum 3TCK]
          Length = 549

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 136/328 (41%), Gaps = 59/328 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE L+++  +E   GA  + TPR ++     L+           P     + DP  GT
Sbjct: 129 DMYEGLLQKNANETKSGAGQYFTPRSLISTIVKLM----------QPQPREVIQDPAAGT 178

Query: 217 GGFLTDA----------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            GFL +A          ++ +++     ++    V  G EL PET  + +   L+  +E 
Sbjct: 179 AGFLIEADRYIKSHTNDLDDLSEDDQDFQMQRAFV--GLELVPETRRLALMNCLLHDIEG 236

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D  +D    I+ G+TL  D     + +  L+NPPFG                      G 
Sbjct: 237 D--QDKGGAIRLGNTLGSDGEALPKSNVILTNPPFGSA-------------------AGT 275

Query: 327 GLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            + +      S+  + F+ H+   LE     GGRAA+V+  + LF G  G   ++IRR L
Sbjct: 276 NITRTFVHPTSNKQLCFMQHIVESLE----PGGRAAVVIPDNVLFEGGKG---ADIRRDL 328

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNEG 438
           ++   +  ++ LPT +F+   + T +        +      +    T   D+ T++   G
Sbjct: 329 MDKCRLHTVLRLPTGIFYAAGVKTNVLFFQKGTVKNPEQDKKCTTETWVFDMRTNMNTFG 388

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSR 466
            KRR + D      +  Y   +NG+  R
Sbjct: 389 -KRRPLTDKHFDAFIAAYGEDKNGQSPR 415


>gi|59801126|ref|YP_207838.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090]
 gi|254493837|ref|ZP_05107008.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291]
 gi|59718021|gb|AAW89426.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090]
 gi|226512877|gb|EEH62222.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291]
          Length = 533

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+D       G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEDV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGCLKKFDFIVSNPPFKLDFSDFRDRLESD-ENHE--RFFA 325

Query: 327 GLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI        +   LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPTKKEKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAKSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++  
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I + + +++
Sbjct: 435 NQKTVLSCEEEQKICNTFTNKQ 456


>gi|20807981|ref|NP_623152.1| Type I restriction-modification system methyltransferase subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516555|gb|AAM24756.1| Type I restriction-modification system methyltransferase subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 507

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 43/249 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L+RR G+E +  A +F TPR VV     L+           P +   +YDP C
Sbjct: 150 VSQVYEELLRRLGNE-NRLAGEFYTPRPVVRFVVELV----------DPQIGEAVYDPAC 198

Query: 215 GTGGFLTDA---MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL +A   M         H+I       GQE +P    + +  M++  + + PR  
Sbjct: 199 GTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMMLHGV-TVPR-- 255

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + + +TL +++    +RF   ++NPPFG          E  H            P 
Sbjct: 256 ----VMRRNTLEENIRNVSERFDVVVTNPPFG--------GTEGRH-------IQQNFPI 296

Query: 331 ISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            S+ + +LFL H+  KL+  P  G R  +V+    LF G A    +E++R LLE   +  
Sbjct: 297 QSNATELLFLQHIMKKLK--PRDGARCGMVVPEGTLFRGGAF---AEVKRDLLEQFNLHT 351

Query: 390 IVALPTDLF 398
           +V+LP   F
Sbjct: 352 VVSLPPGTF 360


>gi|240014036|ref|ZP_04720949.1| hypothetical protein NgonD_05208 [Neisseria gonorrhoeae DGI18]
 gi|240121602|ref|ZP_04734564.1| hypothetical protein NgonPI_07528 [Neisseria gonorrhoeae PID24-1]
          Length = 533

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+D       G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEDV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDRLESD-ENHE--RFFA 325

Query: 327 GLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI        +   LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPTKKEKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAKSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++  
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I + + +++
Sbjct: 435 NQKTVLSCEEEQKICNTFTNKQ 456


>gi|300361583|ref|ZP_07057760.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
 gi|300354202|gb|EFJ70073.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
          Length = 483

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 47/336 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +++    +++   L KI K+    EL   +  +  + ++YE L+ +  SEV  GA  + T
Sbjct: 92  YANASTAIDEPANLEKIIKDID--ELDWFSAREEGLGDLYEGLMEKNASEVKSGAGQYFT 149

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPP 238
           PR ++++   +            P +     DP  GT GF+  A  ++ D    +  + P
Sbjct: 150 PRVLINMMVKMT----------KPEIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSTLSP 199

Query: 239 ILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G EL P TH + +    + R++          + QG +LS +    K 
Sbjct: 200 DQYDFQVEDAFSGMELVPNTHRLAIMNEYLHRMDG--------RLDQGDSLSANGKWMKG 251

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K            K GE         + S+  + FL  + N L+   +
Sbjct: 252 FDVVLTNPPFGTK------------KGGERATRDDLTYETSNKQLNFLQIIYNSLK--SD 297

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+V+  + LF    G GE +IR+ LL    +  I+ LPT +F+   + T +   +
Sbjct: 298 GKARAAVVVPDNVLF--ADGVGE-KIRQDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFT 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             ++++   K   I   D+   +R+ GK+  + N D
Sbjct: 355 RGESDKDNTKETWI--YDMRHQMRSFGKRNPLNNKD 388


>gi|322517065|ref|ZP_08069950.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124325|gb|EFX95833.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
          Length = 534

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 152/312 (48%), Gaps = 40/312 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIAEILVGND------KPQNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKA-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---S 332
           I +G+T+ ++    ++  Y +SNPPF   + K +D VE   +  E  RF  G+PK    S
Sbjct: 280 IVEGNTILRNRHP-EKMDYIVSNPPFKLDFSKWRDQVETLPEASE--RFFAGVPKTLPKS 336

Query: 333 DGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              M    LF+ H+     L P+  G+AA+VL +   F       + +IR+ L++N ++ 
Sbjct: 337 KDKMAIYELFIQHII--YSLKPD--GQAAVVLPTG--FITAQNGIDKKIRQHLVDNQMMA 390

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +V++P+++F  T     +  +  +     +G V LI+A++L T I+    ++ +++ ++
Sbjct: 391 GVVSMPSNIFATTGTKVSILFIDKK----NKGDVVLIDASNLGTKIKEGKNQKTVLSPEE 446

Query: 449 RRQILDIYVSRE 460
            ++I++ ++ +E
Sbjct: 447 EQKIVETFIKKE 458


>gi|240016476|ref|ZP_04723016.1| hypothetical protein NgonFA_04779 [Neisseria gonorrhoeae FA6140]
          Length = 533

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 157/322 (48%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+D       G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEDV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGCLKKFDFIVSNPPFKLDFSDFRDRLESD-ENHE--RFFA 325

Query: 327 GLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI        +   LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPTKKEKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAKSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++  
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I + + +++
Sbjct: 435 NQKTVLSCEEEQKICNTFTNKQ 456


>gi|254225987|ref|ZP_04919588.1| N-6 DNA Methylase family [Vibrio cholerae V51]
 gi|125621521|gb|EAZ49854.1| N-6 DNA Methylase family [Vibrio cholerae V51]
          Length = 552

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 136/322 (42%), Gaps = 46/322 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     L+        K  P  I  + DP  G
Sbjct: 129 GDMYEGLLQKNANETKSGAGQYFTPRSLISTIVELI--------KPQPREI--IQDPAAG 178

Query: 216 TGGFLTDAMNHV-ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  ++ A      ++P             G EL PET  + +   L+  +E D
Sbjct: 179 TAGFLIEADKYIKAQTNDLDELPLDDQEFQRTKAFVGLELVPETRRLALMNCLLHDIEGD 238

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   I+ G+TL     +  + +  L+NPPFG     +       H  G        
Sbjct: 239 ENEGA---IRLGNTLGSAGESLPKANVILTNPPFGSAASTNITRTFV-HPTG-------- 286

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                +  + F+ H+ + LE     GGRAA+V+  + LF G  G   +EIRR L++   +
Sbjct: 287 -----NKQLCFIQHIYDALE----PGGRAAVVIPDNVLFEGGKG---TEIRRDLMDKCNL 334

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ LPT +F+   + T +        E   + +G  + I   D+ T+I   G KRR +
Sbjct: 335 HTILRLPTGIFYAQGVKTNVLFFQKGTQENPMQDKGCTKEIWVFDMRTNINTFG-KRRPL 393

Query: 445 NDDQRRQILDIYVSRENGKFSR 466
            D      +  Y    NG+  R
Sbjct: 394 TDKHFEAFIAAYGEDPNGQSPR 415


>gi|300313843|ref|YP_003777935.1| Type I restriction-modification system methyltransferase subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300076628|gb|ADJ66027.1| Type I restriction-modification system methyltransferase subunit
           protein [Herbaspirillum seropedicae SmR1]
          Length = 860

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 125/492 (25%), Positives = 205/492 (41%), Gaps = 74/492 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--FGGSNI 67
            LA  IW +A  +    +  ++   IL F   + L   LE  R AV + +      G + 
Sbjct: 5   QLAAKIWASANQMRSKIEANEYKDYILGFIFYKYLSDKLE--RFAVSQDFSKEDIQGLSE 62

Query: 68  DLESFVKV----AGY--SFYNTSEYSLSTLGS---TNTRNNLESYIASFSDNAKAIFEDF 118
           D E  V       GY  S+ N     L+  G     N R  L ++      N K +F+  
Sbjct: 63  DDEEIVNFFKSNLGYFISYPNLFSTWLALGGDFEVANVRVALSAFSRLIHPNHKRLFDGI 122

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGI-ELHPDTVPD-----RVMSNIYEHLIRRFGSEVS 171
            F +    L K G       K  S + +L  D   D      V+  IYE+LI  F +   
Sbjct: 123 -FKTLETGLSKLGESAASQTKAISALLQLIKDIPMDGRQGYDVLGFIYEYLISMFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + ++        K+   +   +YD T G+G  L +    +    
Sbjct: 182 KKAGEFYTPHEVSVLMSEIIAHH----LKDRKTI--QIYDSTSGSGSLLLN----IGQAI 231

Query: 232 SHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
           + H +    + +  QEL+  T+ +    +++R +   P   +++N     TL  D     
Sbjct: 232 AKHMVDKDNIKYFAQELKENTYNLTRMNLVMRGIL--PSNIVTRN---ADTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSML 337
                  +        +SNPP+ +KW+        EHK  +    RFG  L   S     
Sbjct: 287 DQDPVNSYNPLYLDAVVSNPPYSQKWDP-------EHKEADPRYARFG--LAPKSKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H  +   L P+G    AIVL    LF G     E  IR+ L+EN+ +E I+ LP+++
Sbjct: 338 FLLH--DLYHLKPDG--IMAIVLPHGVLFRG---GEEGAIRKTLIENNHLETIIGLPSNI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L  ++       V +++A+        EGK  ++   D ++ I D+  
Sbjct: 391 FFGTGIPTIILVLRQKR---ESSDVLIVDAS---KGFAKEGKNNKLRACDIKK-IADVVT 443

Query: 458 SREN-GKFSRML 468
            R N   +SR++
Sbjct: 444 GRLNVPGYSRLV 455


>gi|313205416|ref|YP_004044073.1| site-specific DNA-methyltransferase (adenine-specific)
           [Paludibacter propionicigenes WB4]
 gi|312444732|gb|ADQ81088.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Paludibacter propionicigenes WB4]
          Length = 491

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 154/371 (41%), Gaps = 61/371 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +   +V  GA  + TPR ++      +           P  ++T+ DP 
Sbjct: 125 VKGDIYEKLLEQNAQDVKSGAGQYFTPRPLIRAMVECI----------QPQPLKTIADPA 174

Query: 214 CGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRR---LES 266
           CGTGGF   A +++          +K   +   +G E+   T  + +  M +     ++S
Sbjct: 175 CGTGGFFLAAYDYLVANNKLDKDQNKFLKLETFYGNEIVASTRRLALMNMFLHNIGDIDS 234

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D     +  +   S+ + D        Y L+NPPFGKK  +     E E +  +L     
Sbjct: 235 DNFISPADALIAASSTTYD--------YVLANPPFGKKSSQTFTNEEGEQEKDDLTYNRQ 286

Query: 327 GL-PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S+  + F+ H+ + L+      G AA+V+  + LF G  G+GE+ +R+ LLE  
Sbjct: 287 DFWATTSNKQLNFVQHIRSMLKTT----GMAAVVVPDNVLFEG--GAGET-VRKKLLETT 339

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            +  I+ LPT +F+   +   + I  + K   +    + +   D  T++ +  KK   +N
Sbjct: 340 DLHTILRLPTGIFYANGVKANV-IFFDNKPASKTPWTKEVWVYDYRTNVHHTLKKNP-LN 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDY----------RTFGYRRIKVLRPLRMSFILDKTGL 495
            D  +  +  Y      +F R   Y          R F Y  I V R        DKT L
Sbjct: 398 IDVLKDFIACY--NPANRFKRTETYNAETNPEGKWRKFSYDEI-VAR--------DKTSL 446

Query: 496 ARLEADITWRK 506
                DITW K
Sbjct: 447 -----DITWLK 452


>gi|239828718|ref|YP_002951341.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239809011|gb|ACS26075.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 629

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 131/301 (43%), Gaps = 44/301 (14%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L   +  E   G E++ +P+ +  L   LL +P             T YD T G GG 
Sbjct: 116 ELLYHSYEWEGVRGGENY-SPKSINQLGIELL-NPISG----------TFYDGTAGFGGT 163

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A+ +        K+      +GQE++  + A+    +L+          L   + QG
Sbjct: 164 LVSALEYSKQNNGELKL------YGQEIDHTSWALAKLNLLLHD-------KLDAELIQG 210

Query: 280 STLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
             L    F      K+F++ + + P    W + ++  E   K  +  RF  G+P      
Sbjct: 211 DALLNPAFIDGDRLKKFNFIMMDFP----WVELRNHYET-LKQDKYNRFIYGIPPRRSAD 265

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+MH    LE      G+A +V+    LF   A   E  IR+ L+  D+IEA++ALP 
Sbjct: 266 FAFIMHTLASLE----SDGKAVLVVPGRTLF---ASGMEQSIRQNLIAADVIEAVIALPA 318

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            L+  T I T L IL+  K+ +R+G++  INA +     + + +  +++  D   +I+  
Sbjct: 319 GLYKHTGIQTNLLILNKNKSLDRKGRILFINAEN---EFQTKQRYLKVLTKDNIDKIIST 375

Query: 456 Y 456
           Y
Sbjct: 376 Y 376


>gi|225573220|ref|ZP_03781975.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039352|gb|EEG49598.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM
           10507]
          Length = 606

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 126/294 (42%), Gaps = 39/294 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D V   ++  IYE+ + +F   ++     F TP+ +V +   ++ +P   +         
Sbjct: 159 DEVGGDIIGRIYEYFLNKFAKNIASDDGVFFTPKSLVKMIVNII-EPKSGI--------- 208

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP CG+GG    + + V   G +      +  +GQE       +C+  M +      
Sbjct: 209 -LLDPACGSGGMFIQSGDFVNHSGMNAN--NTMTFYGQEKVEYNAQLCLMNMAVH----- 260

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYC----LSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               L+  I+ G   +   +     + C    ++NPPF      DK   E     G L  
Sbjct: 261 ---GLTGVIKSGDEANSFYYDAHNLNGCCDYVMANPPFNV----DKVKAESAESAGRLPF 313

Query: 324 FGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             P + K   IS+G+ L++ +  + L    N  GRA  V++SS      +   + +IR  
Sbjct: 314 GTPAVNKNKEISNGNYLWISYFYSYL----NENGRAGFVMASSAT---DSQGKDKDIREK 366

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           L++   ++ +V++  + F+  ++   LW     K+EE + KV  I+A + +T +
Sbjct: 367 LVKTGHVDVMVSVGNNFFYTKSLPCSLWFFDKGKSEETKDKVLFIDARNYYTVV 420


>gi|262280000|ref|ZP_06057785.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262260351|gb|EEY79084.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 491

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 143/324 (44%), Gaps = 51/324 (15%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHL 162
           +A  +D+ +A      FS     ++  GL+ KI      G + +  +       +IYE L
Sbjct: 97  LAVENDDPRARVVQNVFSDAYNYMKSGGLIRKIINQIQKGFDFN-KSKERHAFGDIYEQL 155

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R   +  + G  +F TPR V      ++           P +  ++ DP CGTGGFLT 
Sbjct: 156 LRDLQAAKNSG--EFYTPRAVTTFMAQIV----------DPQLGESVLDPACGTGGFLTS 203

Query: 223 AMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           A+ H            KI    + +G E +P  H +C   M++  +      D+   I++
Sbjct: 204 AIEHKRENYVQTAEDEKILQNSI-YGIEKKPLPHLLCTTNMILHGI------DVPVQIRR 256

Query: 279 GSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +TLS  L    T KR    L+NPPFG   E+    +EK           P   +  + +
Sbjct: 257 DNTLSYPLISWGTDKRVDVVLTNPPFGGTEEQ---GIEKNF---------PSKFQTRETA 304

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALP 394
            LF++ +   L+      GRAA+VL    +F    G G ++ I+  L+E+  +  IV LP
Sbjct: 305 DLFMVLIIQLLK----AHGRAAVVLPDGFMF----GEGIKTAIKEKLMEDCNLHTIVRLP 356

Query: 395 TDLFF-RTNIAT-YLWILSNRKTE 416
             +F   T+I+T  L+    +KTE
Sbjct: 357 KSVFAPYTSISTNILFFTKGKKTE 380


>gi|84390142|ref|ZP_00991404.1| type I restriction-modification system, M subunit [Vibrio
           splendidus 12B01]
 gi|84376796|gb|EAP93671.1| type I restriction-modification system, M subunit [Vibrio
           splendidus 12B01]
          Length = 524

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 137/328 (41%), Gaps = 53/328 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR ++     L+          +P    T+ DP  
Sbjct: 126 LGDLYEGLLEKNANETKSGAGQYFTPRPLIDAIVKLM----------NPQAGETIQDPAA 175

Query: 215 GTGGFLT-------DAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL        D  + + D G   +        +G EL P T  + +   L+  +E 
Sbjct: 176 GTAGFLIAAHEFIKDKTDDLYDLGEKEQGFQKSKAYNGMELVPSTRRLALMNCLLHGIEG 235

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +        I QG+TLS +     + +  LSNPPFG                   G  GP
Sbjct: 236 EGE----GAIHQGNTLSGEGAQLPKVNLILSNPPFGTS----------------KGGGGP 275

Query: 327 GLPKI----SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               +    S+  + FL H+   L+     GGRAA+VL  + LF   AG G+ ++R  L+
Sbjct: 276 TRDDLTYETSNKQLAFLQHIYRHLK----PGGRAAVVLPDNVLF--EAGVGQ-KVRADLM 328

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNEGK 439
               +  I+ LPT +F+   + T +        E +  +     +T   D+ T++   G 
Sbjct: 329 NKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTPENKDQEENCTTSTWVYDMRTNMNTFG- 387

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRM 467
           KRR + +      ++ Y S  NG+  R+
Sbjct: 388 KRRPLTERHFAPFIEAYGSDANGQSPRI 415


>gi|262166148|ref|ZP_06033885.1| type I restriction-modification system M subunit [Vibrio mimicus
           VM223]
 gi|262025864|gb|EEY44532.1| type I restriction-modification system M subunit [Vibrio mimicus
           VM223]
          Length = 860

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 143/318 (44%), Gaps = 50/318 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++ +      K    +   +YDPT
Sbjct: 164 VLGFIYEYLISHFAANAGKKAGEFYTPHEVSVLMSEIMAEH----LKNRKDI--QIYDPT 217

Query: 214 CGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            G+G  L +    V    D  ++ +       + QEL+  T+ +    + +R +   P  
Sbjct: 218 SGSGSLLINIGQSVEKRLDAQNNIRY------YAQELKQNTYNLTRMNLFMRGIL--PNN 269

Query: 271 DLSKNIQQGSTLSKD-------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            +++N     TL  D            R    +SNPP+ +KW+        E KN +  R
Sbjct: 270 IITRN---ADTLEDDWPIDNEKTHEPMRVDAVVSNPPYSQKWDP-------EFKNKD-PR 318

Query: 324 FGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + P GL   +     FL+H  +   L P+G     IVL    LF G     E +IR  L+
Sbjct: 319 YAPFGLAPKTKADYAFLLH--DLYHLKPDG--IMTIVLPHGVLFRG---GDEGKIRENLI 371

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + I+A++ LP ++FF T I T + +L   +T +    V +I+A+        +GK  +
Sbjct: 372 EKNHIDAVIGLPANIFFGTGIPTVILVLKRIRTSD---DVLIIDAS---KGFIKDGKNNK 425

Query: 443 IINDDQRRQILDIYVSRE 460
           +   D RR I+D    R+
Sbjct: 426 LRACDIRR-IVDTVSDRQ 442


>gi|313611002|gb|EFR85913.1| type I restriction enzyme EcoprrI M protein [Listeria monocytogenes
           FSL F2-208]
          Length = 417

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 175/447 (39%), Gaps = 88/447 (19%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRL-ECALEPTRS----------AVREKYL--- 60
           +W  A +L G    + +   +L     + L +  LE  +S           + E+Y+   
Sbjct: 11  LWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGKGQLSEAELVEEYVKDR 70

Query: 61  AFGGSNIDLESFVKVAGY-----SFYNT-------SEYSLSTLGSTNTRNNLESYIASFS 108
           A+ G N+D +    V GY       Y T        E+ +  +   ++ NN E  IA   
Sbjct: 71  AYHGENLD-KMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKV--IDSLNNFERTIAVSG 127

Query: 109 DNAKAIFEDFD--FSSTIARLEKAGL---LYKICKNFSG-IELHPDT-----VPDRVMSN 157
           D+     +DF   FSS+   L    L   L +  KN    IEL  D          V+ +
Sbjct: 128 DS-----DDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMVALQKSDVLGD 182

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F  E  + A +F TPR V  +   +     +         I ++YDPT G+G
Sbjct: 183 AYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAAKTSN---------ITSIYDPTVGSG 233

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L     H+ +      +   L  +GQE    T+ +    +L+  +  +       +++
Sbjct: 234 SLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVHPE-----KMSVK 283

Query: 278 QGSTLSKDL-------FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF--GPG 327
            G TLS+D          G  F   + NPP+    W K    V          RF     
Sbjct: 284 NGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDP-------RFEIAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I
Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRK 414
           + I+ LP +LF  T I   + IL   +
Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNR 416


>gi|304310051|ref|YP_003809649.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301795784|emb|CBL43983.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 713

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 161/396 (40%), Gaps = 70/396 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE+ + +F  + +    +F TP  +V L    +L+PD             ++DP 
Sbjct: 155 IFGRIYEYFLTQFADQGAHDGGEFFTPVSLVQLIVN-VLEPDHG----------KIFDPA 203

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    + + +     H + P  L  +G E    T  +    + +  LE        
Sbjct: 204 CGSGGMFVQSAHFME---RHAQDPHELTFYGHEKNRVTTRLAKMNLAVHGLEG------- 253

Query: 274 KNIQQGS---TLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            N++ G    T   D   G      Y ++NPPF      + D V+ +   G+  R   GL
Sbjct: 254 -NVEGGEAAITYYNDPHEGLFGTVDYVMANPPF------NVDEVDADKIKGDKRRLPFGL 306

Query: 329 P------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           P      K+S+ + L++ +  + L    N  GRA  V+SS       AG  E+++R  L+
Sbjct: 307 PGVNKNKKVSNANYLWIQYFYSYL----NDTGRAGFVMSSQA---SSAGRDEAKVREQLV 359

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   ++ +V +  + F+   +   LW L+  K    + KV +++A +++  +        
Sbjct: 360 KTGHVDIMVDIRGNFFYTRTVPCQLWFLNKNKPAHLKDKVLMLDARNVYRKV-------- 411

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-- 500
                  R+I D    ++    + +  YR  G R +++++      I +     + EA  
Sbjct: 412 ------TRKIYDFSPEQQQNLTAVVWLYRGEGERFVELVQQYIDKSIFEARSCEQSEALA 465

Query: 501 -------DITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                   I   KLS   Q F +D L+     + PY
Sbjct: 466 CEPVPDFIIQLEKLSQAFQPF-MDKLEQNGVSVEPY 500


>gi|257463919|ref|ZP_05628305.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
 gi|317061446|ref|ZP_07925931.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
 gi|313687122|gb|EFS23957.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
          Length = 475

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 131/319 (41%), Gaps = 56/319 (17%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR   
Sbjct: 95  TRIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPR--- 149

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---KIPPILV 241
                +L+D    + K  P +  T+YDP  GT GF+ +A  ++      +      PI  
Sbjct: 150 -----VLIDSIVRMIK--PELGETIYDPAAGTLGFIIEADKYLRKISQDYYGTAENPISE 202

Query: 242 PHGQ---------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
              Q         EL  +TH + +   L+  +E         N  QG TLS+      RF
Sbjct: 203 EVSQKYKKVFSACELVQDTHRLGMMNALLHGIEG--------NFLQGDTLSEFGKQFSRF 254

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              LSNPPFG K            K GE       +   S+  + FL  +   L +   G
Sbjct: 255 DIILSNPPFGTK------------KGGERATRDDLVYATSNKQLNFLEVIYRSLNV--TG 300

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             RAA+VL  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   + 
Sbjct: 301 KARAAVVLPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFT- 356

Query: 413 RKTEERRGKVQLINATDLW 431
                 RG     N  ++W
Sbjct: 357 ------RGTSDTNNTKEIW 369


>gi|293398988|ref|ZP_06643153.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62]
 gi|291610402|gb|EFF39512.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62]
          Length = 533

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 153/321 (47%), Gaps = 48/321 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+D       G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEDV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLESD-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G+PKI            LF+ H+     L  N  G+AAIVL +   F       + +IR 
Sbjct: 326 GIPKIKAKDKDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTG--FITAQSDIDKKIRE 379

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++   
Sbjct: 380 YLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGKN 435

Query: 440 KRRIINDDQRRQILDIYVSRE 460
           ++ +++ ++ ++I + + +++
Sbjct: 436 QKTVLSCEEEQKICNTFTNKQ 456


>gi|20090959|ref|NP_617034.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
 gi|19916043|gb|AAM05514.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
          Length = 498

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 110/251 (43%), Gaps = 27/251 (10%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE L+++   +   GA  + TPR ++ +    L           P  ++T+ DP CGTG
Sbjct: 131 IYEGLLQKNAEDTKSGAGQYFTPRPLIKVMVQCL----------RPEPMKTIGDPCCGTG 180

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GF   A + +       +     + +    G E+   T  + +  M +  +      D  
Sbjct: 181 GFFLAAYDFLTSNYRLDREQSRFLKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGE 237

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKIS 332
             I     L  D   G R+ Y L+NPPFGKK        E E +  +L           S
Sbjct: 238 PMISNSDALIAD--PGYRYDYILTNPPFGKKSSMTFTNEEGEQEKEDLTYNRQDFWTSTS 295

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +  + FL H+   L+     GG+AA+VL  + LF G  G+GE+ IR+ LLE   +  I+ 
Sbjct: 296 NKQLNFLQHIHTILKT----GGQAAVVLPDNVLFEG--GAGET-IRKKLLETTDLHTILR 348

Query: 393 LPTDLFFRTNI 403
           LPT +F+   +
Sbjct: 349 LPTGIFYANGV 359


>gi|304310387|ref|YP_003809985.1| Type I restriction-modification system DNA methyltransferase
           subunit [gamma proteobacterium HdN1]
 gi|301796120|emb|CBL44326.1| Type I restriction-modification system DNA methyltransferase
           subunit [gamma proteobacterium HdN1]
          Length = 731

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 51/310 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE+ + +F    ++   +F TP  +V +   ++           PG    L DP 
Sbjct: 152 VFGRIYEYFLNKFAMSGAQEGGEFFTPPSLVRMIVGVI----------EPGHGLVL-DPA 200

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+ G      + + D   H  +   +  HGQE       +    +++  L++       
Sbjct: 201 CGSAGMFVQTGHFIEDV-RHQVVNDSVTFHGQEKSDTNTKLARMNLVVHGLDA------- 252

Query: 274 KNIQQGSTL--SKDLFTGKRFHYCLSNPPFG------KKWEKDKDAVEKEHKNGELGRFG 325
            NI+QG+T     +   G+   + ++NPPF       KK E   DAV     NG  GR  
Sbjct: 253 SNIRQGNTFYDQAEHLIGQ-CDFVMANPPFNVDGVDTKKVEAQVDAV----ANG--GRLP 305

Query: 326 PGLP-------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            GLP        IS+ + L++ +    L    N  GRA  V++SS      AG+ + +IR
Sbjct: 306 FGLPGTNAKTGAISNANSLWVQYFYAYL----NDTGRAGFVMASSA---SDAGNKDRDIR 358

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             L++   ++ ++A+    F+  ++   LW     K ++ + +V +I+A +++T +    
Sbjct: 359 EQLVKTGHVDVMMAIGNKFFYTRSLPCTLWFFDKGKPQDLQNQVLMIDARNVYTVV---S 415

Query: 439 KKRRIINDDQ 448
            +  +  D+Q
Sbjct: 416 ARSHVFTDEQ 425


>gi|158522247|ref|YP_001530117.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511073|gb|ABW68040.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 528

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 41/285 (14%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ K  + +   P  +       IYE+ +  F     +   +F TP  +V L   ++
Sbjct: 128 LLKELLKTMNSV---PMDIEGDAFGRIYEYFLGNFARAEGQKGGEFFTPTAIVRLIVGII 184

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPE 250
                      P   R +YDP CG+GG    +   VA+   H K P   L  +GQE   E
Sbjct: 185 ----------EPFHGR-IYDPACGSGGMFVQSARFVAE---HKKNPGAELSVYGQEKVAE 230

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDK 309
           T  +    + +  L  D        I++G+   +DL     +F + ++NPPF      + 
Sbjct: 231 TVRLGKMNLAVHGLSGD--------IREGNAYYEDLHRAVNKFDFVMANPPF------NV 276

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D V+K+    +  RF  GLP+  + + L++    + L    N  GR+  V+++S      
Sbjct: 277 DRVDKDRLKDD-PRFPFGLPRTDNANYLWIQIFYSAL----NKTGRSGFVMANSA---SD 328

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           A   E +IRR L+E   ++ +VA+ ++ F+   +   LW     K
Sbjct: 329 ARGSELDIRRQLIEAQAVDVMVAVGSNFFYTVTLPCTLWFFDKGK 373


>gi|226223147|ref|YP_002757254.1| HsdM type IC modification subunit [Listeria monocytogenes
           Clip81459]
 gi|254993315|ref|ZP_05275505.1| HsdM type IC modification subunit [Listeria monocytogenes FSL
           J2-064]
 gi|225875609|emb|CAS04312.1| Putative HsdM type IC modification subunit [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 529

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 50/318 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S+IYE+L+ +F + ++     + TP+++ ++   +L    + + K S      ++DPT
Sbjct: 167 TVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFS------IFDPT 220

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    +++ + G       ++  +GQE +   + +    +++  +E +      
Sbjct: 221 VGSGSLLLTTASYMKNSGRR----GVIKYYGQEKDATPYRLSRMNLMMHGIEYN-----D 271

Query: 274 KNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELG 322
            NI    TL  D   G        + F   ++NPP+   W   +++ D   +E+      
Sbjct: 272 ININHADTLESDWPDGVVDGKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREY------ 325

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   +     FL+H    LE      GR AI+L    LF G   + E  IR+ L+
Sbjct: 326 ----GVSPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRG---ASEGRIRKALI 374

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   IEAI+  P  LF  T I   + IL   + E     V  ++A+  +  I    KK+ 
Sbjct: 375 DKHQIEAIIGFPEKLFLNTPIPVCVVILRKNRIE---SDVLFVDASKGFEKI----KKQN 427

Query: 443 IINDDQRRQILDIYVSRE 460
            +  +   +I+D  ++R+
Sbjct: 428 NLRSEDVEKIVDTVINRK 445


>gi|121610476|ref|YP_998283.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
 gi|121555116|gb|ABM59265.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 535

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 125/510 (24%), Positives = 206/510 (40%), Gaps = 98/510 (19%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------CALEPTRSAVREK 58
           L + +W  A+ L G     DF   +L F  LR L             C      S  R  
Sbjct: 9   LGSILWNIADRLRGAMNADDFRDYMLSFLFLRYLSDNYEAATRKELGCDYPALESEDRRA 68

Query: 59  YLA--FGGSNIDLESFVKV--AGYSFYNTSEY---SLSTLGSTNTRNNLE------SYIA 105
            LA  +  +  D + F +   +   +    +Y   S++ +  T  ++ L       SYI 
Sbjct: 69  PLAVWYEQNPSDTDDFERQMRSKTHYVIRPKYLWGSIAEMARTQDKDLLRTLQESFSYIE 128

Query: 106 --SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTVPDRVMS 156
             SF+     +F + + SS     EK G  Y     K+C     I   L   +V    + 
Sbjct: 129 NESFASTFDGLFSEINLSS-----EKLGKSYTERNAKLCSIIQEIADGLTKFSVDKDTLG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-----IRTLYD 211
           + YE+LI +F +   + A +F TP+ +  + +A++     AL  ++P       + ++ D
Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIV-----ALDSQNPAAGKKKHLNSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGALLLNVRKQLGPNG-------IGRIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG- 322
               I  G TL  D    +        RF   ++NPPF  +W+            G +G 
Sbjct: 287 SEFEIFHGDTLINDWDMLRESNPAKMPRFDAVVANPPFSYRWDP----------TGAMGD 336

Query: 323 --RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR 
Sbjct: 337 DVRFKNHGLAPKSAADFAFLLHGFHYLKQE----GVMAIILPHGVLFRGGA---EERIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +     +GK
Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF----EKGK 442

Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRML 468
           ++  +  +   +I+D Y  R E  +++R +
Sbjct: 443 RQNRLLLEHIDKIIDTYRFRNEEERYARCV 472


>gi|240115789|ref|ZP_04729851.1| hypothetical protein NgonPID1_06019 [Neisseria gonorrhoeae PID18]
 gi|260440393|ref|ZP_05794209.1| hypothetical protein NgonDG_04771 [Neisseria gonorrhoeae DGI2]
 gi|268601467|ref|ZP_06135634.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|291043690|ref|ZP_06569406.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585598|gb|EEZ50274.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|291012153|gb|EFE04142.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 533

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 48/321 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+             L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHVIGEDKCMIYTQDISQKSSNLLRLNLSLNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             N+ QG+T+     KD     K+F + +SNPPF   +   +D +E + +N E  RF  G
Sbjct: 271 -NNVVQGNTILSPYHKDASDRLKKFDFIVSNPPFKLDFSDFRDQLESD-ENRE--RFFAG 326

Query: 328 LPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRR 379
           +PKI            LF+ H+     L  N  G+AAIVL +  +    A SG + +IR 
Sbjct: 327 IPKIKAKDKDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAQSGIDKKIRE 379

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++   
Sbjct: 380 YLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGKN 435

Query: 440 KRRIINDDQRRQILDIYVSRE 460
           ++ +++ ++ ++I + + +++
Sbjct: 436 QKTVLSCEEEQKICNTFTNKQ 456


>gi|13508081|ref|NP_110030.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129]
 gi|12229979|sp|P75436|T1MD_MYCPN RecName: Full=Putative type I restriction enzyme MpnORFDP M
           protein; Short=M.MpnORFDP
 gi|1674186|gb|AAB96142.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129]
          Length = 543

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 161/374 (43%), Gaps = 53/374 (14%)

Query: 112 KAIFEDFDFS-----STIA-RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           K +F+DF+ S     ST+  R EK   L          E   +++      + YE LI  
Sbjct: 140 KGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFEKNSID--AFGDAYEFLISM 197

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +     +   +F TP+D+  L   + +   D         +  +YD  CG+G  L   + 
Sbjct: 198 YAQNAGKSGGEFFTPQDISELLARIAIGKKDT--------VDDVYDMACGSGSLLLQVIK 249

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284
            +       +   ++  +GQE+   T+ +C   M++  ++       + NI    TL+  
Sbjct: 250 VLG-----KEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-----ANFNIINADTLTTK 299

Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDA-VEKEHKNGELGRFGPGLPKISDGSM 336
                  +      F   +SNPP+   W  DK + +  + +  + G   P     S   +
Sbjct: 300 EWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPN----SKADL 355

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L       G AAIV     L+  R G  E  IR++L++ + ++A++ LP++
Sbjct: 356 AFVLHALYVL----GQEGTAAIVCFPGILY--REGK-EQTIRKYLVDQNFVDAVIQLPSN 408

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF  T+IAT + +L  +K  +++  +  I+ ++ +       KK   ++     +I+D +
Sbjct: 409 LFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFV----REKKNNRLSPKNIEKIVDCF 462

Query: 457 VS-RENGKFSRMLD 469
            S +E   F++ ++
Sbjct: 463 NSKKEEANFAKSVE 476


>gi|327459321|gb|EGF05667.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1]
          Length = 534

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 152/313 (48%), Gaps = 42/313 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S ++E++I+ +  +      ++ TP  V  +   +L+  D       P  +R +YDP+ G
Sbjct: 180 STLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND------QPSNVR-IYDPSAG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 233 SGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLLRLNLILNGLQHSIH-----N 279

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I QG+T+  +    ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK+   S
Sbjct: 280 IVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDRVETLPEASE--RFFAGVPKVPAKS 336

Query: 336 M-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
                   LF+ H+   L+      G+AA+VL +  +    A SG +  IR+ L++N ++
Sbjct: 337 KDKMAIYELFVQHIIYSLK----SDGQAAVVLPTGFI---TAQSGIDKTIRQHLVDNQML 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ +
Sbjct: 390 AGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSSE 445

Query: 448 QRRQILDIYVSRE 460
           + ++I++ ++ ++
Sbjct: 446 EEQKIVETFIKKK 458


>gi|254478539|ref|ZP_05091914.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035547|gb|EEB76246.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 476

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 43/249 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L+RR G+E +  A +F TPR VV     L+           P +   +YDP C
Sbjct: 130 VSQVYEELLRRLGNE-NRLAGEFYTPRPVVRFVVELV----------DPQIGEAVYDPAC 178

Query: 215 GTGGFLTDA---MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL +A   M         H+I       GQE +P    + +  M++  + + PR  
Sbjct: 179 GTCGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMVLHGV-TVPR-- 235

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + + +TL +++    +RF   ++NPPFG          E  H            P 
Sbjct: 236 ----VMRRNTLEENIRNVSERFDVVVTNPPFG--------GTEGRH-------IQQNFPI 276

Query: 331 ISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            S+ + +LFL H+  KL+  P  G R  +V+    LF G A    +E++R LLE   +  
Sbjct: 277 QSNATELLFLQHIMKKLK--PRDGARCGMVVPEGTLFRGGAF---AEVKRDLLEQFNLHT 331

Query: 390 IVALPTDLF 398
           +V+LP   F
Sbjct: 332 VVSLPPGTF 340


>gi|32476949|ref|NP_869943.1| type I restriction-modification system DNA methylase
           [Rhodopirellula baltica SH 1]
 gi|32447497|emb|CAD79086.1| type I restriction-modification system DNA methylase
           [Rhodopirellula baltica SH 1]
          Length = 720

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 135/311 (43%), Gaps = 51/311 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE+ + RF  + +    +F TP  +V +   ++ +PD             ++DP 
Sbjct: 166 VFGRIYEYFLARFSIQKAHDNGEFFTPSSLVQMLVNVI-EPDHG----------KVFDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    + + +   G       +   +GQE  P+T  +    + +          L+
Sbjct: 215 CGSGGMFVQSSHFIEHEGGDTAKRAVF--YGQEKNPDTIRIAKMNLAVH--------GLT 264

Query: 274 KNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I +  T  +D   L  G  F   ++NPPF      + D V+ E    +  R   GLP 
Sbjct: 265 GEIGEAITYYEDQHNLVGGADF--VMANPPF------NVDLVDAERIKTDTDRLPFGLPG 316

Query: 330 -----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K+++G+ L++ +  + L    N  GRA  V+SS       AG GE ++R  ++  
Sbjct: 317 VNKQKKVANGNYLWISYFWSYL----NEKGRAGFVMSSQA---SSAGHGEKDVRERIVRT 369

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             ++ ++++ ++ F+  ++   LW     K + +R  V +++A  ++  +       R I
Sbjct: 370 GDVDVMMSIRSNFFYTRSVPCELWFFDRGKPKAQRDHVLMVDARSVYRKV------NRTI 423

Query: 445 NDDQRRQILDI 455
           ND    Q+ ++
Sbjct: 424 NDFAPEQMANL 434


>gi|27365370|ref|NP_760898.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Vibrio vulnificus CMCP6]
 gi|27361517|gb|AAO10425.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Vibrio vulnificus CMCP6]
          Length = 496

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 127/296 (42%), Gaps = 53/296 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+   D+    +  +IYE ++R   S  + G  +F T
Sbjct: 110 FSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDIYEQILRDLQSAGNAG--EFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHH 234
           PR V       L           P +   + DP CGTGGFL  + +HV +        H 
Sbjct: 167 PRAVTRFIVNRL----------DPKLGEQIMDPACGTGGFLACSFDHVKENYVTSAADHQ 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFH 293
            +   +  HG E +   H +C+  M++  +E      +   I+ G+TL+K L +     +
Sbjct: 217 TLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPVQIKHGNTLNKPLSSWDSNIN 268

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     ++D +EK           P   +  + + LFL  +   L+      
Sbjct: 269 VIATNPPFGG---TEEDGIEKNF---------PAEMQTRETADLFLQLIVEVLDKE---- 312

Query: 354 GRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           GRA +VL    LF    G G +++I++ L E   +  IV LP  +F      +TNI
Sbjct: 313 GRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVRLPNGVFNPYTGIKTNI 364


>gi|188585422|ref|YP_001916967.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350109|gb|ACB84379.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 621

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 27/229 (11%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           M  + YD T G    L +A       G   ++      +GQE++P+  A+    ++    
Sbjct: 147 MDGSFYDGTAGLCNTLIEASEFAEQEGGALQL------YGQEIDPKIWALGKINLIFNEC 200

Query: 265 ESD--PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL 321
                 R D  +N    +T   +L   K F Y   N PFG + W      VE E +    
Sbjct: 201 HDVVLEREDSLRNPM--TTEDNNL---KTFDYIGMNIPFGLRDW-----GVE-EARRDLF 249

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           GRF  G+P    G M F++H    L    N  G+AAIV+    LF G     E++IR  L
Sbjct: 250 GRFRYGIPSKQHGDMAFILHALTSL----NRSGKAAIVVPHGVLFRG---GREAKIREKL 302

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           + ND+IE +V LP+ L   TNI   + IL+  K EE   K+ ++NA D+
Sbjct: 303 INNDVIEGVVDLPSGLLAGTNIPVSIIILNKLKPEESTEKIFMVNAKDI 351


>gi|28897162|ref|NP_796767.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361456|ref|ZP_05774515.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus K5030]
 gi|260878069|ref|ZP_05890424.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260896964|ref|ZP_05905460.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|28805371|dbj|BAC58651.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088725|gb|EFO38420.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308090051|gb|EFO39746.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308111003|gb|EFO48543.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus K5030]
          Length = 496

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 53/316 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+   D+    +  +IY
Sbjct: 90  LKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   S  + G  +F TPR V       L           P +   + DP CGTGGF
Sbjct: 149 EQILRDLQSAGNAG--EFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  + +HV +        H  +   +  HG E +   H +C+  M++  +E      +  
Sbjct: 197 LACSFDHVKENYVTSAADHQTLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K L       +   +NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L+      GRA +VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLD----KDGRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVR 348

Query: 393 LPTDLF-----FRTNI 403
           LP  +F      +TNI
Sbjct: 349 LPNGVFNPYTGIKTNI 364


>gi|331006857|ref|ZP_08330112.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
 gi|330419332|gb|EGG93743.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
          Length = 493

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 51/317 (16%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +L++  A    N +       FS     ++   LL ++    + I+    +    +  ++
Sbjct: 89  DLKTLTAPIDSNPRGYVVKEAFSDAFNYMKNGTLLRQVVNKLNEIDF-TSSEERHLFGDL 147

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   S  + G  +F TPR V      ++          +P +  ++ DP CGTGG
Sbjct: 148 YEQILKDLQSAGNAG--EFYTPRAVTRFIVQMI----------NPQLGESVLDPACGTGG 195

Query: 219 FLTDAMNHVAD--CGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           FL  + + ++D   G   K         G E +   H +C   M++  +E      + KN
Sbjct: 196 FLACSADLLSDQVGGDTDKYNLFQESLRGVEKKQLPHLLCTTNMMLHGIE------VPKN 249

Query: 276 IQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I+ G+TLSK L +     +    +SNPPFG     ++D +EK         F P   +  
Sbjct: 250 IRHGNTLSKQLSSIDEDDQVDVVVSNPPFGG---MEEDGIEK---------FFPAEMQTR 297

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIV 391
           + + LFL ++   L    N  GRAA+VL    LF    G G +++I++ LLE   +  +V
Sbjct: 298 ETADLFLQYIVEIL----NEKGRAAVVLPDGTLF----GEGVKTKIKKMLLEECNLHTLV 349

Query: 392 ALPTDLF-----FRTNI 403
            LP  +F      +TNI
Sbjct: 350 RLPNSVFAPYTSIKTNI 366


>gi|124006763|ref|ZP_01691594.1| type I restriction enzyme [Microscilla marina ATCC 23134]
 gi|123987671|gb|EAY27371.1| type I restriction enzyme [Microscilla marina ATCC 23134]
          Length = 539

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 158/329 (48%), Gaps = 50/329 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + I+E+LI+ + +       ++ TP  V  +    ++  + +          T YDP+ G
Sbjct: 182 ATIFEYLIKDYNTNSGGKYAEYFTPHAVAKIMARCMVHGEVSNV--------TCYDPSAG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSK 274
           +G  L   MN     G +         + Q++  ++  +    +++  L  S P      
Sbjct: 234 SGTLL---MNLAHQIGENR-----CTIYSQDISQKSSGLLRLNLILNDLVHSLP------ 279

Query: 275 NIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           NI +G+T+S    K+    ++F Y +SNPPF   +   +DA++ +  N E  RF  G+PK
Sbjct: 280 NIVKGNTISEPYHKEGNALRQFDYIVSNPPFKLDFSDMRDALDTK-ANRE--RFFAGVPK 336

Query: 331 ISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLL 382
           + +         +LFL H+ + L+  PN  G+AAIV+ +  +    A SG + +IR+ L+
Sbjct: 337 VPNKKKESMAIYLLFLQHIMHSLK--PN--GKAAIVVPTGFI---TAQSGIDKKIRQRLV 389

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +  ++  ++++P+++F  T     +  L     +E    V LI+A+ L   ++    +R 
Sbjct: 390 DERMLAGVISMPSNIFANTGTNVSIVFLDRANKDE----VVLIDASGLGEKVKEGKSQRT 445

Query: 443 IINDDQRRQILDIY-VSRENGKFSRMLDY 470
           +++ ++  QI++ +   +E   FS ++ Y
Sbjct: 446 VLSTEEEDQIIETFNAKKELDDFSVIVSY 474


>gi|266619617|ref|ZP_06112552.1| type I restriction-modification system, M subunit [Clostridium
           hathewayi DSM 13479]
 gi|288868819|gb|EFD01118.1| type I restriction-modification system, M subunit [Clostridium
           hathewayi DSM 13479]
          Length = 471

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 115/284 (40%), Gaps = 49/284 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N+YE L+ +  +E   GA  + TPR ++ +   L+           P +     DP C
Sbjct: 122 LGNLYEGLLEKNANEKKSGAGQYFTPRVLIDVMVRLM----------KPQVGERCNDPAC 171

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESD 267
           GT GF+  A  +V +      I   L          G EL  ETH + +   ++      
Sbjct: 172 GTFGFMIAADKYVKEHNDFWGISADLAEFQHKEAFTGCELVHETHRLALMNAML------ 225

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D+   I    TLS      K +   L+NPPFG +            K GE       
Sbjct: 226 --HDIEGQIMLADTLSNAGKQLKGYDLVLTNPPFGTE------------KGGERATRDDF 271

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   S+  + FL H+   L+  PNG  RAA+VL  + LF    G GE  IR  L+E   +
Sbjct: 272 VFSTSNKQLNFLQHIYRSLK--PNGKARAAVVLPDNVLFAD--GDGE-RIRVDLMERCNL 326

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             ++ LPT +F+   + T +   +       RG     N  ++W
Sbjct: 327 HTVLRLPTGIFYAQGVKTNVLFFT-------RGTTDKDNTKEVW 363


>gi|251798709|ref|YP_003013440.1| N-6 DNA methylase [Paenibacillus sp. JDR-2]
 gi|247546335|gb|ACT03354.1| N-6 DNA methylase [Paenibacillus sp. JDR-2]
          Length = 494

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 57/300 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  SE   GA  + TPR ++ + T  L+DP        PG      DP  
Sbjct: 122 LGDLYEGLLEKNASETKSGAGQYFTPRPLIDVITK-LVDP-------QPG--ERCNDPAA 171

Query: 215 GTGGFLTDAMNHV--------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           GT GF+  A  HV              A+   H          G EL  +TH + +   +
Sbjct: 172 GTFGFMIAADRHVRNNTDDYFDLGEKEAEFQKHQAFT------GVELVKDTHRLAMMNAM 225

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +         D+   I  G TLS D    K F   L+NPPFG K            + GE
Sbjct: 226 L--------HDIHGEIILGDTLSDDGTNLKNFDVILTNPPFGTK------------QGGE 265

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                      ++  + FL H+   L+   NG  RAA++L  + LF    G   ++IR  
Sbjct: 266 RPTRDDLTFATTNKQLNFLQHIYRALK--ANGKARAAVILPDNVLFESGVG---TKIRAD 320

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L++   +  I+ LPT +F+   + T +   +  KT+  +   + I   DL T++ + GK+
Sbjct: 321 LMDKCNLNTILRLPTGIFYAQGVKTNVLFFTREKTD--KDSTKNIWVYDLRTNMPSFGKR 378


>gi|320155757|ref|YP_004188136.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio vulnificus MO6-24/O]
 gi|319931069|gb|ADV85933.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio vulnificus MO6-24/O]
          Length = 496

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 126/296 (42%), Gaps = 53/296 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+   D+    +  +IYE ++R   S  + G  +F T
Sbjct: 110 FSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDIYEQILRDLQSAGNAG--EFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH-----VADCGSHH 234
           PR V       L           P +   + DP CGTGGFL  + +H     V +   H 
Sbjct: 167 PRAVTRFIVNRL----------DPKLGEQIMDPACGTGGFLACSFDHVKENYVTNASDHQ 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFH 293
            +   +  HG E +   H +C+  M++  +E      +   I+ G+TL+K L       +
Sbjct: 217 TLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPVQIKHGNTLNKPLSNWDSNIN 268

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     ++D +EK           P   +  + + LFL  +   L+      
Sbjct: 269 VIATNPPFGG---TEEDGIEKNF---------PAEMQTRETADLFLQLIVEVLD----KD 312

Query: 354 GRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           GRA +VL    LF    G G +++I++ L E   +  IV LP  +F      +TNI
Sbjct: 313 GRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVRLPNGVFNPYTGIKTNI 364


>gi|73670715|ref|YP_306730.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72397877|gb|AAZ72150.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 498

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 113/254 (44%), Gaps = 33/254 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE L+++   +   GA  + TPR ++ +    L           PG ++T+ DP CGTG
Sbjct: 131 IYEGLLQKNAEDTKSGAGQYFTPRPLIKVMVQCL----------QPGPLKTIGDPCCGTG 180

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GF   A + +    SH+++              G E+   T  + +  M +  +      
Sbjct: 181 GFFLAAYDFLT---SHYRLDKEQSRFLKNKTFGGNEIVAGTRRLALMNMFLHNI---GEI 234

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-P 329
           D    I     L  D   G R+ Y L+NPPFGKK        E E +  EL         
Sbjct: 235 DGEPMISNSDALIAD--PGYRYDYILTNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWT 292

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+  + FL H+   L+     GG+AA+VL  + LF G  G+GE+ IR+ LLE   +  
Sbjct: 293 TTSNKQLNFLQHIHTILKT----GGQAAVVLPDNVLFEG--GAGET-IRKKLLETTDLHT 345

Query: 390 IVALPTDLFFRTNI 403
           I+ LPT +F+   +
Sbjct: 346 ILRLPTGIFYANGV 359


>gi|328947117|ref|YP_004364454.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328447441|gb|AEB13157.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 580

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 48/340 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  LL  I + F  I   P+ +   +   IYE  +  F  +  +    F TP  VV   
Sbjct: 135 EEPELLSNIMRIFMDI---PENISVDLFGEIYEFFLGEFALQEGKDGGTFYTPATVVRYM 191

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---HG 244
             +L  P +          + + DP CG+GG    A+  +     H+K    ++    +G
Sbjct: 192 VEVL-QPQNGE--------KKILDPACGSGGMFVQAVRFMH---RHNKASDEVMKFRCYG 239

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            E EP+T  +    +L+  +  +        ++  S  S        F Y ++NPPF   
Sbjct: 240 VEKEPDTVKLAKMNLLLNNVRGEI-------VEANSFYSDPHNAVGNFDYVMANPPFNVD 292

Query: 305 ---WEKDKD-------AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
              ++K KD        V K +K+    +       + + + L++ + A+ L    N  G
Sbjct: 293 EVVYDKVKDDPRFNIYGVPK-NKSKTAKKGSDKKETVPNANYLWISYFASSL----NQTG 347

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+V+++S      AG  E EIR+ ++E  +I  +V LP+++F    +   LW    +K
Sbjct: 348 KAALVMANSA---SDAGGSELEIRKKMIEEGIISQMVTLPSNMFSSVTLPATLWFFDKQK 404

Query: 415 TE--ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           T+  +++ K+  I+A  ++T +    +  R  +D+Q + +
Sbjct: 405 TQDAQKKDKILFIDARSIFTQV---DRAHRKFSDEQIKNL 441


>gi|192362278|ref|YP_001984093.1| type I restriction-modification system specificity subunit
           [Cellvibrio japonicus Ueda107]
 gi|190688443|gb|ACE86121.1| type I restriction-modification system specificity subunit
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 50/322 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR +V L  A+L           P   R ++DP 
Sbjct: 161 VLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELLVAML----------EPYKGR-VFDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H      +  +GQE    T  +    + IR +++       
Sbjct: 210 CGSGGMFVQSEKFVEE---HQGRVNDISIYGQESNQTTWRLAKMNLAIRGIDASQ----V 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR------FGP 326
           K   +GS L+ D     +  Y ++NPPF    W            +GEL R      +GP
Sbjct: 263 KWNNEGSFLN-DAHKDVKADYIIANPPFNVSDW------------SGELLRTDGRWKYGP 309

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END 385
             P + + +  +L H      L P G  +A +VL+   L +    SGE EIR+ L+ E +
Sbjct: 310 P-PPLGNANFAWLQHFI--YHLAPKG--KAGVVLAKGALTS--KTSGEGEIRKALIAEGN 362

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKR 441
           LI+ IV LP  LF  T I   LW ++  +    +       +  L+   RN G    ++ 
Sbjct: 363 LIDCIVNLPAKLFLNTQIPAALWFMNRARGSSSKSSGHPRKSEILFIDARNLGHLINRRT 422

Query: 442 RIINDDQRRQILDIYVSRENGK 463
           R ++ D   +I  +Y +   G+
Sbjct: 423 RELSHDDINKIAGVYHNWRTGE 444


>gi|91792593|ref|YP_562244.1| N-6 DNA methylase [Shewanella denitrificans OS217]
 gi|91714595|gb|ABE54521.1| N-6 DNA methylase [Shewanella denitrificans OS217]
          Length = 501

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 138/324 (42%), Gaps = 57/324 (17%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+   D+    +  ++Y
Sbjct: 90  LKNLTAPIDKNPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSNERHLFGDLY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR +     A+            P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAITKFIVAVT----------DPKLGESIMDPACGTGGF 196

Query: 220 LTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +H     V     H  +   +   G E +   H +C   M++  +E      +  
Sbjct: 197 LACAFDHVKANYVKTADDHQTLQQQIF--GVEKKQLPHLLCTTNMMLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHGNTLNKPLSSWDEQVDVIITNPPFGG---TEEDGIEKNF---------PSEFQTRE 296

Query: 334 GSMLFLMHLANKLELPPNG--------GGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
            + LFL  +   L  P  G        GGRAA+VL    LF    G G +++I++ L++ 
Sbjct: 297 TADLFLQLIIEVLAEPSAGNEPSALKSGGRAAVVLPDGTLF----GEGVKTKIKKMLMDE 352

Query: 385 DLIEAIVALPTDLF-----FRTNI 403
             +  IV LP  +F      +TNI
Sbjct: 353 CNLHTIVRLPNGVFNPYTGIKTNI 376


>gi|240080598|ref|ZP_04725141.1| hypothetical protein NgonF_04687 [Neisseria gonorrhoeae FA19]
 gi|240118085|ref|ZP_04732147.1| hypothetical protein NgonPID_06446 [Neisseria gonorrhoeae PID1]
 gi|240123639|ref|ZP_04736595.1| hypothetical protein NgonP_06824 [Neisseria gonorrhoeae PID332]
 gi|268596723|ref|ZP_06130890.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19]
 gi|268603800|ref|ZP_06137967.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268682268|ref|ZP_06149130.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268550511|gb|EEZ45530.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19]
 gi|268587931|gb|EEZ52607.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268622552|gb|EEZ54952.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
          Length = 533

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 153/321 (47%), Gaps = 48/321 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLESD-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G+PKI            LF+ H+     L  N  G+AAIVL +   F       + +IR 
Sbjct: 326 GIPKIKAKDKDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTG--FITAQSDIDKKIRE 379

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++   
Sbjct: 380 YLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGKN 435

Query: 440 KRRIINDDQRRQILDIYVSRE 460
           ++ +++ ++ ++I + + +++
Sbjct: 436 QKTVLSCEEEQKICNTFTNKQ 456


>gi|254507574|ref|ZP_05119707.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio
           parahaemolyticus 16]
 gi|219549461|gb|EED26453.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio
           parahaemolyticus 16]
          Length = 496

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 53/316 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+   D+    +  +IY
Sbjct: 90  LKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   S  + G  +F TPR V       L           P +   + DP CGTGGF
Sbjct: 149 EQILRDLQSAGNAG--EFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  + +HV +        H  +   +  HG E +   H +C+  M++  +E      +  
Sbjct: 197 LACSFDHVKENYVTSTADHQTLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K L       +   +NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L+      GRA +VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLD----KDGRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVR 348

Query: 393 LPTDLF-----FRTNI 403
           LP  +F      +TNI
Sbjct: 349 LPNGVFNPYTGIKTNI 364


>gi|268686736|ref|ZP_06153598.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627020|gb|EEZ59420.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 495

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 153/321 (47%), Gaps = 48/321 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 131 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 184

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 185 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 232

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 233 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLESD-ENRE--RFFA 287

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G+PKI            LF+ H+   L+      G+AAIVL +   F       + +IR 
Sbjct: 288 GIPKIKAKDKDKMEIYQLFIQHILFSLK----ENGKAAIVLPTG--FITAQSDIDKKIRE 341

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+EN ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++   
Sbjct: 342 YLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGKN 397

Query: 440 KRRIINDDQRRQILDIYVSRE 460
           ++ +++ ++ ++I + + +++
Sbjct: 398 QKTVLSCEEEQKICNTFTNKQ 418


>gi|260767610|ref|ZP_05876546.1| N-6 DNA methylase [Vibrio furnissii CIP 102972]
 gi|260617510|gb|EEX42693.1| N-6 DNA methylase [Vibrio furnissii CIP 102972]
          Length = 713

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 148/357 (41%), Gaps = 60/357 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE+ +  F  + +    +F TP  +V L    +L+PD             ++DP 
Sbjct: 155 IFGRIYEYFLTEFADQGAHDGGEFFTPVSLVQLLVN-VLEPDHG----------KIFDPA 203

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +  H  +  + +  P  L  +G E    T  +    + +  LE        
Sbjct: 204 CGSGGMFVQSA-HFMERNAQN--PQELTFYGHEKNRVTTRLAKMNLAVHGLEG------- 253

Query: 274 KNIQQGS---TLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            N++ G    T   D   G      Y ++NPPF    E D D V+K+       R   GL
Sbjct: 254 -NVEGGESAITYYNDPHEGLFGTVDYVMANPPFNVD-EVDADKVKKDQ-----ARLPFGL 306

Query: 329 P------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           P      K+S+ + L++ +  + L    N  GRA  V+SS       AG  E+++R  L+
Sbjct: 307 PGVNKNKKVSNANYLWIQYFYSYL----NDTGRAGFVMSSQA---SSAGRDEAKVREQLV 359

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   ++ +V +  + F+  ++   LW L   K    + KV +++A +++  +        
Sbjct: 360 KTGDVDIMVDVRGNFFYTRSVPCQLWFLDKNKPANLKNKVLMLDARNVYRKV-------- 411

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
                  R+I D    ++    + +  YR  G R I+++R      +L+     ++E
Sbjct: 412 ------TRKIYDFSPEQQKNLTAIVWLYRNEGKRFIELVREYISRSLLEAQQCGKIE 462


>gi|308190348|ref|YP_003923279.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|319777745|ref|YP_004137396.1| n-6 DNA methylase [Mycoplasma fermentans M64]
 gi|307625090|gb|ADN69395.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|318038820|gb|ADV35019.1| N-6 DNA methylase [Mycoplasma fermentans M64]
          Length = 551

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 157/325 (48%), Gaps = 48/325 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--GMIRTLYDP 212
            S I+E+LI  +     + AE + TP+    L+ A+     + L K SP    I  +YDP
Sbjct: 180 FSTIFEYLISDYNIASGKYAE-YFTPQ---TLSKAI----GEILVKMSPIEDKIYEIYDP 231

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  +     H+A+     K       + Q++  ++       ML+  L     ++ 
Sbjct: 232 SAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLNGL-----KES 282

Query: 273 SKNIQQGSTL--------SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             NI +G TL        + D  TG K+F +  SNPPF   +   +D +E   +N E  R
Sbjct: 283 LDNIIEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIELMWQNTE--R 340

Query: 324 FGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ES 375
           F  G+PK+           +LF+ H+   L+     GG+AAIV+ +  +    A SG E 
Sbjct: 341 FFAGIPKVPKTKKDSMAIYLLFIQHILYSLK----EGGKAAIVVPTGFI---TAQSGIEK 393

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IR+++++   ++ ++++P+++F   N  T + +L   KT    G+V L++A+ +    +
Sbjct: 394 TIRQYIIDRKWLKGVISMPSNIF--ANTGTNVSVLFIDKT-NTNGEVLLMDASKMGHKEK 450

Query: 436 NEGKKRRIINDDQRRQILDIYVSRE 460
            +  ++ ++  D+  +I++ +V+ +
Sbjct: 451 VKDLQKTVLTHDELNKIVNDFVNHK 475


>gi|264677645|ref|YP_003277551.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208157|gb|ACY32255.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 142

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG----- 64
           + +FIW  A+D   D F    +  VILP  +LRRL+C LEP++ AV E+ + F       
Sbjct: 9   IVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEE-VRFQREDAEM 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           +++D     + +GY FYNTS ++L +L    +    NL++Y+  FSDN K I E FD  +
Sbjct: 68  ADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLGGFSDNVKEIVEKFDLRN 127

Query: 123 TIARLEKAG 131
            I ++ + G
Sbjct: 128 QIRKMVQHG 136


>gi|154492485|ref|ZP_02032111.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC
           43184]
 gi|254881870|ref|ZP_05254580.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|154087710|gb|EDN86755.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC
           43184]
 gi|254834663|gb|EET14972.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 513

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 37/278 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ +  F  E  +   +F TP  VV     ++      +F           DP 
Sbjct: 156 VLGRVYEYFLGEFAREEGKKGGEFYTPSCVVRTIVEVIQPYKGKIF-----------DPA 204

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +     H      +  +GQEL   T  +    + I  +E++      
Sbjct: 205 CGSGGMFVQSSKFIE---RHRGNINQISVYGQELNSNTWKLAQMNLAICGIEANFGDSF- 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                G +   D     +  + ++NPPF   KW  D+   +         R+  G+P   
Sbjct: 261 -----GDSFHDDKHPFLKADFVMANPPFNISKWGGDQLRDDP--------RWQYGIPPEG 307

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+   L       GR  +VL++  L + + G+ E EIR+ ++  DL+E IVA
Sbjct: 308 NANFAWMQHMLYHLA----DNGRIGLVLANGSL-SSQQGT-EGEIRKNIVNADLVEGIVA 361

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +P+ LF+   I   LW L+ +K +   GK   I+A ++
Sbjct: 362 MPSQLFYNVQIPCCLWFLTKKKAQP--GKTLFIDARNM 397


>gi|53715506|ref|YP_101498.1| type I restriction-modification system DNA methylase [Bacteroides
           fragilis YCH46]
 gi|52218371|dbj|BAD50964.1| type I restriction-modification system DNA methylase [Bacteroides
           fragilis YCH46]
          Length = 271

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 51/260 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE  ++ F     +   +F TP  +V L  A L++P D           T+YDP 
Sbjct: 52  LIGRVYESFLQAFSINADKEEGEFYTPHSIVEL-IASLIEPFDG----------TVYDPC 100

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    A   +   G + K   +   +GQE EP T+ +    + IR +         
Sbjct: 101 CGSGGMFVQAAIFIEAHGGNTKAVNV---YGQESEPATYRLAKMNLAIRGIS------YH 151

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------GP 326
              +  ST S D     +F   ++NP   KK+              E G F       G 
Sbjct: 152 LGDRAVSTFSDDQHKELKFDNTMANPL--KKY-------------AEYGGFETDPRWQGY 196

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE-IRRWLLEND 385
           G+P  S+ +  +++H+ NKL +     G A  +L+     NG  G  +++ IR+ L+E+D
Sbjct: 197 GVPPTSNANYAWILHILNKLNV---SCGIAGFLLA-----NGALGDNDTQGIRKQLIESD 248

Query: 386 LIEAIVALPTDLFFRTNIAT 405
            +EAI+  P ++F+ T+I++
Sbjct: 249 KVEAIIVSPRNMFYSTDISS 268


>gi|78484677|ref|YP_390602.1| N-6 DNA methylase [Thiomicrospira crunogena XCL-2]
 gi|78362963|gb|ABB40928.1| Type I restriction-modification system, M subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 709

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 41/300 (13%)

Query: 145 LHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           L+PD +      +   IYE+ + +F  + +    +F TP  +V +   ++ +PD      
Sbjct: 143 LNPDELKKMDGDIFGRIYEYFLTQFAGQGAHDGGEFFTPISIVQMIVNVI-EPDHG---- 197

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-ILVPHGQELEPETHAVCVAGML 260
                  ++DP CG+GG    + + V    S HK P  +L  +G E    T  +    + 
Sbjct: 198 ------KVFDPACGSGGMFVQSAHLVE---SMHKNPSQLLTFYGHEKNTTTTRLAKMNLQ 248

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +  LE            +  T  KD   G      + ++NPPF    E D D +    KN
Sbjct: 249 VHGLEGQI-----AGGNEAITYYKDPHEGLWGDTDFVMANPPFNVD-EVDADKI----KN 298

Query: 319 GELGRFG-PGL---PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                FG PG+    K+S+G+ L+  +  + L    +  GRA  V+SS       AG  E
Sbjct: 299 DRRLVFGLPGVNKNGKVSNGNYLWASYFYSYL----SDTGRAGFVMSSQA---SSAGGKE 351

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           +E+R+ L++   ++A++ + ++ F+  ++   LW  +  K +E   KV +++A +++  +
Sbjct: 352 AEVRKELVKTGHVDAMIDIRSNFFYTRSVPCQLWFYNKGKPQEHLDKVLMVDARNVFRKV 411


>gi|257094685|ref|YP_003168326.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047209|gb|ACV36397.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 606

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 133/322 (41%), Gaps = 56/322 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     R+    LL  I    +GI     +     +S++YE ++R       +  E F T
Sbjct: 148 FKGVQNRMVSGYLLRDIINKINGIHFR-SSEEIHTLSHLYESMLREMRDAAGDSGE-FYT 205

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKI 236
           PR VV     +            P +  T+ DP CGTGGFL  A +H+A      +  + 
Sbjct: 206 PRPVVRFMVQVT----------DPKLGETVLDPACGTGGFLVGAYDHIAAQVTTPAEWRK 255

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFH 293
                  GQE +P  + +    +L+  LE       +  I  G+TL +   ++  G+R  
Sbjct: 256 LQRETLFGQEAKPLPYMLVQMNLLLHGLE-------APQIAYGNTLDRRINEIGHGERVD 308

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL----- 348
             L+NPPFG            E + G    F P + + ++ + LFL ++  KL +     
Sbjct: 309 VILTNPPFG-----------GEEEVGIKANFPPNM-QTAETTQLFLQYIMRKLRVVGAPV 356

Query: 349 ----PPNGGGRAAIVLSSSPLFNGRAGSGESE-IRRWLLENDLIEAIVALPTDLFFRTNI 403
               P   GGRAA+V+ +  LF    G G S  I+  +L+   +  IV LP  +F     
Sbjct: 357 RGGKPAARGGRAAVVVPNGTLF----GDGISAVIKEEMLKEFRLHTIVRLPQGVF----- 407

Query: 404 ATYLWILSNRKTEERRGKVQLI 425
           A Y  I +N    ER G    I
Sbjct: 408 APYTDIPANLLFFERGGPTDTI 429


>gi|228472619|ref|ZP_04057379.1| type I restriction enzyme EcoKI M protein [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276032|gb|EEK14788.1| type I restriction enzyme EcoKI M protein [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 472

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 49/328 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++   + +E+   L KI K    ++ +  +  +  + N+YE L+ +  +E   GA  + T
Sbjct: 89  YAGAKSNIEEPKNLEKIIKTIDALDWY--SAKEEGLGNLYEGLLEKNANEKKSGAGQYFT 146

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HH 234
           PR ++ + T L            P       DP CGT GF+  A  ++ D          
Sbjct: 147 PRVLIDVMTELT----------HPQAGERCNDPACGTFGFMIAADRYIKDQTDDLFSLSQ 196

Query: 235 KIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           ++    +     G EL  ETH + +   ++         D+   IQ G TLS        
Sbjct: 197 EMQEFQINEAFSGGELVHETHRLALMNAML--------HDIKGPIQLGDTLSSLGKQMTG 248

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPFG K            K GE           S+  + FL H+   L+    
Sbjct: 249 YDVVLTNPPFGTK------------KGGERATRDDLTFPTSNKQLNFLQHIYRSLKR--- 293

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF    G GE  IR+ L+E   +  I+ LPT +F+   + T +    
Sbjct: 294 -GGRAAVVLPDNVLF--VDGDGE-RIRKDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFE 349

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGK 439
              ++  +G  Q +   DL +++ N GK
Sbjct: 350 RGLSD--KGNTQEVWFYDLRSNMPNFGK 375


>gi|254303653|ref|ZP_04971011.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323845|gb|EDK89095.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 498

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 137/312 (43%), Gaps = 46/312 (14%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-V 154
            RN    +I +  D+ ++IF  +   + I ++    +L         I  +P  V D+  
Sbjct: 92  VRNEAFEFIKNLDDDKESIFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +    G   F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLATSGKNGQ--FRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++        A     +K     + HG + +     +    +L+  +++
Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMKT 258

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P+      +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 259 -PK------LKRIDSLSTDYSEENDYTLILANPPF-------KGSVDESLLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLFG--ASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF 398
           +EA++++P+ +F
Sbjct: 355 LEAVISMPSGVF 366


>gi|255523606|ref|ZP_05390573.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|255512661|gb|EET88934.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
          Length = 473

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 140/333 (42%), Gaps = 57/333 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +  +   +++   L KI     G++ +  +  +  + N+YE L+ +  SE   GA  + T
Sbjct: 89  YQGSATNIDEPKNLEKIITTIDGLDWY--SAKEEGLGNLYEGLLEKNASEKKSGAGQYFT 146

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +    L+DP        PG      DP  GT GF+  A +++     ++     
Sbjct: 147 PRVLIDVMVK-LIDP-------KPG--EKCNDPAAGTFGFMIGADHYLKQKYDNYFDLDT 196

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  ETH + +   ++         D+  NI  G TL+ +    K 
Sbjct: 197 DLQEFQRTKAFSGCELVHETHRLALMNAML--------HDIEGNIILGDTLTNEGKKMKD 248

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               LSNPPFG K            K GE           S+  + FL H+   L+   +
Sbjct: 249 LDVVLSNPPFGTK------------KGGERATRDDLTFMTSNKQLNFLQHIYRSLK--AD 294

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+VL  + LF  + G G ++IR  L++   +  I+ LPT +F+   + T +   +
Sbjct: 295 GKARAAVVLPDNVLF--QEGDG-TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 351

Query: 412 NRKTEERRGKVQLINATDLW-----TSIRNEGK 439
                  RG     N  ++W     T+++N GK
Sbjct: 352 -------RGTTDKDNTKEVWFYDLRTNMQNFGK 377


>gi|319788901|ref|YP_004090216.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
 gi|315450768|gb|ADU24330.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
          Length = 476

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 118/285 (41%), Gaps = 50/285 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N+YE L+ +  +E   GA  + TPR ++++ T L+          +P       DP C
Sbjct: 122 LGNLYEGLLEKNATEKKSGAGQYFTPRVLINVMTRLI----------APKAGERCNDPAC 171

Query: 215 GTGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A ++V +             +        G EL  +TH + +   ++     
Sbjct: 172 GTFGFMIAADHYVKEQTDDLFDLSVDEQEFQRTQAFSGCELVHDTHRLALMNAML----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+S  I  G TLS      K F   L+NPPFG K            K GE      
Sbjct: 227 ---HDISGPIYLGDTLSNYGKQMKGFDVVLTNPPFGTK------------KGGERATRDD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L    +G  RAA+VL  + LF    G GE +IRR L++   
Sbjct: 272 LTFPTSNKQLNFLQHIYRSLN--QSGHARAAVVLPDNVLF--ADGDGE-KIRRDLMKKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           +  I+ LPT +F+   + T +   +       RG     N  ++W
Sbjct: 327 LHTILRLPTGIFYAQGVKTNVLFFT-------RGTADKGNTKEVW 364


>gi|238810195|dbj|BAH69985.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 560

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 157/325 (48%), Gaps = 48/325 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--GMIRTLYDP 212
            S I+E+LI  +     + AE + TP+    L+ A+     + L K SP    I  +YDP
Sbjct: 189 FSTIFEYLISDYNIASGKYAE-YFTPQ---TLSKAI----GEILVKMSPIEDKIYEIYDP 240

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  +     H+A+     K       + Q++  ++       ML+  L     ++ 
Sbjct: 241 SAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLNGL-----KES 291

Query: 273 SKNIQQGSTL--------SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             NI +G TL        + D  TG K+F +  SNPPF   +   +D +E   +N E  R
Sbjct: 292 LDNIIEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIELMWQNTE--R 349

Query: 324 FGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ES 375
           F  G+PK+           +LF+ H+   L+     GG+AAIV+ +  +    A SG E 
Sbjct: 350 FFAGIPKVPKTKKDSMAIYLLFIQHILYSLK----EGGKAAIVVPTGFI---TAQSGIEK 402

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IR+++++   ++ ++++P+++F   N  T + +L   KT    G+V L++A+ +    +
Sbjct: 403 TIRQYIIDRKWLKGVISMPSNIF--ANTGTNVSVLFIDKT-NTNGEVLLMDASKMGHKEK 459

Query: 436 NEGKKRRIINDDQRRQILDIYVSRE 460
            +  ++ ++  D+  +I++ +V+ +
Sbjct: 460 VKDLQKTVLTHDELNKIVNDFVNHK 484


>gi|242399586|ref|YP_002995011.1| Type I restriction-modification system methyltransferase subunit
           [Thermococcus sibiricus MM 739]
 gi|242265980|gb|ACS90662.1| Type I restriction-modification system methyltransferase subunit
           [Thermococcus sibiricus MM 739]
          Length = 498

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 98  NNLESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           N L  Y++S   +D    I E F  S+   ++     L +I +N   I  H D     +M
Sbjct: 95  NELWPYLSSLGGTDELNKIGEIF--SNVTVKVHDPHNLLEIFQNIEDI--HKDDEDTHIM 150

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S +YE  +   G E    A ++ TPR +V     ++           P + +T++DP CG
Sbjct: 151 SQLYEETLMLMGRE-GGAAGEYYTPRPIVRFMVKVV----------DPRIGQTVFDPFCG 199

Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           +GGFL +A NH+ +     +    L    +GQEL+ + + +     L+         +++
Sbjct: 200 SGGFLVEAYNHMYEQAKTAEDLRKLDKAFYGQELKTQAYLIANMNTLL--------HNVN 251

Query: 274 KNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             + +  T S+DL   G+ +   L+NPPFG K            K   L      + K  
Sbjct: 252 AKLVKTDTFSEDLHNPGELYDVILTNPPFGGKI-----------KESNLQNL---IVKTR 297

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +  L H+  K       GG+  IVL    L N        ++R+ LLE + + AIV+
Sbjct: 298 STELAALQHVMKK----AKPGGKVGIVLPDGVLSN--VTKAYVKVRKELLEKNNVFAIVS 351

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 352 LPQGVF 357


>gi|300853531|ref|YP_003778515.1| restriction-modification system [Clostridium ljungdahlii DSM 13528]
 gi|300433646|gb|ADK13413.1| restriction-modification system [Clostridium ljungdahlii DSM 13528]
          Length = 901

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 156/357 (43%), Gaps = 69/357 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++     A   ++   I+ +YDPT
Sbjct: 148 VLGFIYEYLISMFAANAGKKAGEFYTPHEVSVLMSEII-----AEHLKNRKQIK-IYDPT 201

Query: 214 CGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  L +  N  A      +KI      + QEL+  T+ +    +++R +        
Sbjct: 202 SGSGSLLINIGNSAAKFIDGENKIDY----YAQELKENTYNLTRMNLVMRGISP-----A 252

Query: 273 SKNIQQGSTLSKD--LF--TGKRFHY-------CLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           + N++ G TL  D   F  T K   Y        +SNPP+ +KW    D  +KE      
Sbjct: 253 NINVRNGDTLEDDWPFFEDTDKDKTYKFIPVDAVVSNPPYSQKW----DPSDKE------ 302

Query: 322 GRFGP-----GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             F P     G+   S     FL+H    L+      G   IVL    LF G     E +
Sbjct: 303 --FDPRYKYYGVAPKSKADYAFLLHDLYHLK----DDGIMTIVLPHGVLFRG---GEEGK 353

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTSIR 435
           IR  L+E + I+AI+ LP ++FF T I T + +L   R T +    V +I+A+  +  + 
Sbjct: 354 IREKLIEKNRIDAIIGLPPNIFFGTGIPTIIMVLKRIRPTSD----VLIIDASKGFEKVG 409

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF---GY-----RRIKVLRP 483
              K R        ++I D   SRE+  K+S ++   T    GY     R +  L P
Sbjct: 410 KNNKLRAC----DIKKIADTVKSRESIEKYSTLVSKETIRENGYNLNIPRYVNSLEP 462


>gi|183600211|ref|ZP_02961704.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827]
 gi|188022508|gb|EDU60548.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827]
          Length = 515

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 194/469 (41%), Gaps = 68/469 (14%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +WK A+ L  +    ++  V+L    L+ +  + E     ++     F G+  D E   
Sbjct: 16  ILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYEKLKAGQGEFAGA--DPEDSD 73

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNL-ESYIASFSDNA-KAIFEDFD-----FSSTIAR 126
           +   Y+ +   E +  T    N  NN  +  I    D+A +AI ED            AR
Sbjct: 74  EYLAYNVFFVPEKARWT----NLLNNAKQPNIGKLVDDAMEAIEEDNPQLKGVLPKVYAR 129

Query: 127 LE-KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
               A +L ++      I L    +    V+ +++E+ +  F     +    F TP+ +V
Sbjct: 130 QNLDATVLGELIDLVGDIALGDAKSRSADVLGHVFEYFLGEFALAEGKQGGQFYTPKSIV 189

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L +P +            ++DP CG+GG    +   V    SH      +  +G
Sbjct: 190 SLLVNML-EPYEG----------RIFDPCCGSGGMFVQSEKFVE---SHQGNIDNISIYG 235

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--- 301
           QE    T  +    + IR + S+      K   +GS L+ D     R  + ++NPPF   
Sbjct: 236 QESNQTTWRLAKMNLAIRGINSEQ----VKWNNEGSFLN-DAHKDLRADFIIANPPFNVS 290

Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
              G++  KD              R+  G P   + +  ++ H      L P G  +A +
Sbjct: 291 DWSGEQLRKD-------------ARWQYGAPPAGNANFAWMQHFL--YHLSPKG--QAGV 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-- 415
           VL+   L +    SGE +IR  L+++ ++I+ IV LP  LF  T I   LW +   +   
Sbjct: 334 VLAKGALTSKT--SGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRNNS 391

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              ++R G++  I+A +L   I    ++ ++++D+  + I D Y +  N
Sbjct: 392 SVYQDRSGEILFIDARNLGYLIN---RRTKVLSDEDIKLISDTYHNWRN 437


>gi|294793237|ref|ZP_06758383.1| putative modification enzyme transmembrane protein [Veillonella sp.
           6_1_27]
 gi|294456182|gb|EFG24546.1| putative modification enzyme transmembrane protein [Veillonella sp.
           6_1_27]
          Length = 616

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 35/307 (11%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL +I + F+   L  D V   ++  IYE+ + +F   ++     F TP+ +V +    +
Sbjct: 145 LLAEILRIFNNSAL--DEVGGDIIGRIYEYFLNKFAKNIASDDGVFFTPKSLVKMIVN-V 201

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           L+P             TL+DP CG+GG    + + V   G +      +  +GQE     
Sbjct: 202 LEPTHG----------TLFDPACGSGGMFIQSGDFVNSHGLNAN--TTMTFYGQEKVEYN 249

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKD 310
             +C+  M +  L       + K+  +G++   D    + R  Y ++NPPF      DK 
Sbjct: 250 AQLCLMNMAVHGLTG-----VIKSGDEGNSFYNDAHQLEGRCDYIMANPPF----NVDKV 300

Query: 311 AVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
             E     G L    PG+ K   I + + L++ +  + L    N  GRA  V++SS    
Sbjct: 301 KSESTQAAGRLPFGMPGVNKNKEIGNANYLWISYFYSYL----NDTGRAGFVMASSAT-- 354

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
             +   +  IR  L++   ++ +V++  + F+  ++   LW     K +    KV  I+A
Sbjct: 355 -DSQGKDKNIRESLVKTGAVDVMVSVGNNFFYTKSLPCSLWFFDRAKPDAIEDKVLFIDA 413

Query: 428 TDLWTSI 434
            + +T +
Sbjct: 414 RNYYTVV 420


>gi|307708292|ref|ZP_07644759.1| type I restriction enzyme [Streptococcus mitis NCTC 12261]
 gi|307615738|gb|EFN94944.1| type I restriction enzyme [Streptococcus mitis NCTC 12261]
          Length = 534

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 187/393 (47%), Gaps = 48/393 (12%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +FY + E +L+ +   N  N++ S + +  D A  +F++   + TI+   K   + K   
Sbjct: 103 TFYESFENTLNQIAIDN--NDIFS-VHTDGDTAIRLFDERLITDTISDSSKRNEVAKAII 159

Query: 139 NFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           N        +++  +     S ++E++I+ +  +      ++ TP  V  +   +L+  D
Sbjct: 160 NLLARVKFDESIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND 219

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                  P  +R +YDP+ G+G  L   MN  +  G           + Q++  ++  + 
Sbjct: 220 ------QPSNVR-IYDPSAGSGTLL---MNLASRIGVDKT-----TVYSQDISQKSSNLL 264

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              +++  L+         NI QG+T+  +    ++  Y +SNPPF   + + +D VE  
Sbjct: 265 RLNLILNGLQHSIH-----NIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDRVESL 318

Query: 316 HKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +  E  RF  G+PK+   S        LF+ H+     L P+  G+AA+VL +  +   
Sbjct: 319 PEASE--RFFAGVPKVPAKSKDKMAIYELFVQHII--YSLKPD--GQAAVVLPTGFI--- 369

Query: 369 RAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
            A SG +  IR+ L+++ ++  +V++P+++F  T     +  +  +     +G V LI+A
Sbjct: 370 TAQSGIDKAIRQHLVDHQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDA 425

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           ++L T ++    ++ +++ ++ ++I++ ++ +E
Sbjct: 426 SNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKE 458


>gi|154245044|ref|YP_001416002.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
 gi|154159129|gb|ABS66345.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
          Length = 486

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 125/307 (40%), Gaps = 69/307 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L+ +  ++   GA  + TPR ++     L+        K  PG I  + DP  
Sbjct: 124 LGTLYEGLLEKNAADKKSGAGQYFTPRPLIDCIVRLM--------KPQPGEI--VQDPAA 173

Query: 215 GTGGFLTDAMNHVAD-----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           GT GFL  A  ++ D            G   +    +   G EL P+TH +C+  +L+  
Sbjct: 174 GTAGFLVAADRYIKDRTDDLFELTEAQGFFQRNNAFV---GAELVPDTHRLCLMNLLLHG 230

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E          ++   TLS D     + H  L+NPPFG K                   
Sbjct: 231 IEG--------GVESMDTLSPDGEGLPKAHLILTNPPFGTK------------------- 263

Query: 324 FGPGLPKISDGS---------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            G G P  +D S         + F+ H+   L      GGRAA+V+  + LF    G   
Sbjct: 264 KGGGRPTRTDFSVTADTSNKQLAFVEHIVRSLR----PGGRAAVVVPDNVLFEDNTG--- 316

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             +R WL+E   +  I+ LPT +F+   + T   +L  R+    +  ++ +   D+  ++
Sbjct: 317 RRLRSWLMELCDLHTILRLPTGIFYAQGVKTN--VLFFRRGTNDKANIKAVWVYDMRANM 374

Query: 435 RNEGKKR 441
              GK R
Sbjct: 375 PAFGKTR 381


>gi|332141624|ref|YP_004427362.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143450|ref|YP_004429188.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551646|gb|AEA98364.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553472|gb|AEB00191.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 713

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 134/320 (41%), Gaps = 50/320 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     R+    LL  +    +GI  +  +     +S +YE ++R       +  E F T
Sbjct: 139 FKGMQNRMINGYLLRDVVDKINGIHFN-SSEEMHTLSRLYETMLREMRDAAGDSGE-FYT 196

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV     ++           P +  ++ DP CGTGGFL +A  H+       +   +
Sbjct: 197 PRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREV 246

Query: 240 LVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           L      G E +   + +    +L+  LE  PR D   +++      +++    R    L
Sbjct: 247 LQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLR---FPLREMGDKDRVDVIL 302

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---G 353
           SNPPFG + EK           G LG F P   + ++   LFL  +  KL+   NG   G
Sbjct: 303 SNPPFGGEEEK-----------GILGNF-PEDMQTAETVQLFLQLIMRKLKRKGNGSVTG 350

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-----FRTNIATY-- 406
           GRAA+V+  S L++G        +R+ LL +  +  I+ LP  +F      ++NI  +  
Sbjct: 351 GRAAVVVPESVLYDGGVA---QRVRKQLLSDFNLHTIIRLPKGVFEPYSDIQSNILFFDR 407

Query: 407 ------LWILSNRKTEERRG 420
                 +W   +    ERRG
Sbjct: 408 NGPTKGVWFYQHEVPVERRG 427


>gi|307720724|ref|YP_003891864.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978817|gb|ADN08852.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
          Length = 495

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 54/260 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE L++  GS+     E F TPR ++ +   ++          +P +  T+YDP  
Sbjct: 156 LSLIYEKLLKDMGSDGGNSGE-FYTPRPLIKVIADVV----------NPVIGETVYDPAA 204

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL +A NH+    +       L              G E  P ++ + V  M++  
Sbjct: 205 GSCGFLIEAYNHIRYINAEENKQRELSTEQLKFLNEDTFFGNEKTPLSYVMGVMNMILHG 264

Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E       S NI + +TL+KD   L   +RF   L+NPPFG    K+ D++++      
Sbjct: 265 IE-------SPNIAKTNTLTKDIRGLEEKERFDCILANPPFGG---KENDSIQQ------ 308

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   P  S+ + +LFL H+ N L+L     G+  +V+    LF  +       +++
Sbjct: 309 ------NFPIKSNATELLFLQHMMNYLKL----NGKCGVVIPEGVLF--QTNKAFQAVKQ 356

Query: 380 WLLENDLIEAIVALPTDLFF 399
            LLE   +  I++LP  +F 
Sbjct: 357 ELLERFNVHTILSLPAGIFL 376


>gi|170724868|ref|YP_001758894.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908]
 gi|169810215|gb|ACA84799.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908]
          Length = 493

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 134/315 (42%), Gaps = 51/315 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+   D+    +  ++Y
Sbjct: 90  LKNLTAPIDKNPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEIDF-TDSKERHLFGDLY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR +     A+            P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAITKFIVAVT----------DPKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           L  A +HV       G  HK     +  G E +   H +C   M++  +E      +   
Sbjct: 197 LACAFDHVKTNYVKSGEDHKTLQQQI-FGVEKKQLPHLLCTTNMMLHGIE------VPVQ 249

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+ G+TL+K L +   +    ++NPPFG     ++D +EK           P   +  + 
Sbjct: 250 IKHGNTLNKPLSSWDDQVDVIITNPPFGG---TEEDGIEKNF---------PSEMQTRET 297

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVAL 393
           + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV L
Sbjct: 298 ADLFLQLIIEVLATK----GRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF-----FRTNI 403
           P  +F      +TNI
Sbjct: 350 PNGVFNPYTGIKTNI 364


>gi|332520739|ref|ZP_08397201.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044092|gb|EGI80287.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix
           algicola 5H-3-7-4]
          Length = 467

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 41/314 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +++    +++   L KI K+    EL      D  +  +YE L+ +  SE   GA  + T
Sbjct: 91  YNNAQTSIQEPANLRKIIKHID--ELDWFEAKDEGLGEMYEGLLEKNASEKKSGAGQYFT 148

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR ++++   L+           P +   L DP CGT GF+  A +++     H+ I  +
Sbjct: 149 PRPLINVMVRLM----------DPKVGERLNDPACGTYGFMIAAHHYIL---KHNDIYNL 195

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLE--SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                  L+ E ++ C       RL   +     +  NI  G +LS    + K     L+
Sbjct: 196 TEEQNNHLQTEQYSGCELVGDTHRLAMMNAFLHGMGGNIALGDSLSSYGESIKNMDLVLA 255

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K            K G+       +   S+  + FL  +   L     GG RAA
Sbjct: 256 NPPFGTK------------KGGDRPTRTDLVYPTSNKQLNFLQGIYRSLH--TRGGARAA 301

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF    G G++ +R+ L+E   +  I+ LPT +F+   + T +          
Sbjct: 302 VVLPDNVLF--EDGDGQN-VRKDLMEKCNLHTILRLPTGIFYAAGVKTNVLFF------- 351

Query: 418 RRGKVQLINATDLW 431
            RGK    N  ++W
Sbjct: 352 ERGKTDKANTKNVW 365


>gi|116871898|ref|YP_848679.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740776|emb|CAK19896.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 529

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 143/325 (44%), Gaps = 51/325 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE+L+ +F + ++     + TP+++ ++   +L    + + K S      ++DPT 
Sbjct: 168 VSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFS------IFDPTV 221

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L    +++ + G       ++  +GQE +   + +    +++  +E +       
Sbjct: 222 GSGSLLLTTASYMKNSGRR----GVIKYYGQEKDATPYRLSRMNLMMHGIEYN-----DI 272

Query: 275 NIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGR 323
           NI    TL  D   G        + F   ++NPP+   W   +++ D   +E+       
Sbjct: 273 NINHADTLESDWPDGVVDGKDTPRMFDVVMANPPYSAHWNNKDREDDPRWREY------- 325

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+   +     FL+H    LE      GR AI+L    LF G   + E  IR+ L++
Sbjct: 326 ---GVSPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRG---ASEGRIRKALID 375

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              IEAI+  P  LF    I   + IL   + E     V  I+A+  +     + KK+  
Sbjct: 376 KHQIEAIIGFPEKLFLNAAIPVCVVILRKNRIE---SDVLFIDASKEF----EKTKKQNS 428

Query: 444 INDDQRRQILDIYVSR-ENGKFSRM 467
           +  +   +I+D  ++R E  K+S +
Sbjct: 429 LRSEDVDKIVDTVINRKEINKYSHV 453


>gi|295697501|ref|YP_003590739.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
 gi|295413103|gb|ADG07595.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
          Length = 502

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 41/249 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S +YE L+RR GSE +  A +F TPR VV     L+          +P +  T+YDP 
Sbjct: 149 TVSQVYEELLRRLGSE-NRLAGEFYTPRPVVRFMVELV----------APQIGETVYDPA 197

Query: 214 CGTGGFLTDA---MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGT GFL  A   M         HK        GQE +P    + +  M++  + + PR 
Sbjct: 198 CGTCGFLAQAYLFMIKSERTLEDHKTLQEKTFFGQEKKPLPALLGLMNMVLHGVTA-PR- 255

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                + + +TL +++    +R+   L+NPPFG          E  H             
Sbjct: 256 -----VMRRNTLEENIRNVTERYDVVLTNPPFG--------GTEGRHIQANFPV------ 296

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + +   +LFL H+  KL+  P  G R  +V+    LF G A    ++++R LLE   +  
Sbjct: 297 QATATELLFLQHIMKKLK--PRDGARCGMVVPEGTLFRGGAF---ADVKRVLLEQFNLHT 351

Query: 390 IVALPTDLF 398
           +V+LP   F
Sbjct: 352 VVSLPPGTF 360


>gi|269797185|ref|YP_003311085.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
 gi|269093814|gb|ACZ23805.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
          Length = 616

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 133/307 (43%), Gaps = 35/307 (11%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL +I + F+   L  D V   ++  IYE+ + +F   ++     F TP+ +V +    +
Sbjct: 145 LLAEILRIFNNSAL--DEVGGDIIGRIYEYFLNKFAKNIASDDGVFFTPKSLVKMIVN-V 201

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           L+P             TL+DP CG+GG    + + V   G +      +  +GQE     
Sbjct: 202 LEPTHG----------TLFDPACGSGGMFIQSGDFVNSHGLNAN--STMTFYGQEKVEYN 249

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKD 310
             +C+  M +  L       + K+  +G++   D    + R  Y ++NPPF      DK 
Sbjct: 250 AQLCLMNMAVHGLTG-----VIKSGDEGNSFYNDAHQLEGRCDYIMANPPF----NVDKV 300

Query: 311 AVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
             E     G L    PG+ K   I + + L++ +  + L    N  GRA  V++SS    
Sbjct: 301 KSESTQAAGRLPFGMPGVNKNKEIGNANYLWISYFYSYL----NDIGRAGFVMASSAT-- 354

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
             +   +  IR  L++   ++ +V++  + F+  ++   LW     K +    KV  I+A
Sbjct: 355 -DSQGKDKNIRESLVKTGAVDVMVSVGNNFFYTKSLPCSLWFFDRAKPDAIEDKVLFIDA 413

Query: 428 TDLWTSI 434
            + +T +
Sbjct: 414 RNYYTVV 420


>gi|91775573|ref|YP_545329.1| type I restriction-modification system, M subunit [Methylobacillus
           flagellatus KT]
 gi|91709560|gb|ABE49488.1| type I restriction-modification system, M subunit [Methylobacillus
           flagellatus KT]
          Length = 540

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 168/380 (44%), Gaps = 59/380 (15%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTVPDRVMSNI 158
           SF+   + +F + + +S     +K G  Y     ++CK  + I   L   +     + + 
Sbjct: 136 SFASTFRGLFSEINLAS-----DKLGKTYTERNARLCKIIAEIAKGLGQFSTDSDTLGDA 190

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDD-ALFKESPGMIRTLYDPTCGT 216
           YE+LI +F +   + A +F TP+ +  + +A++ LD  + A  K S   + +++D  CG+
Sbjct: 191 YEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRS--HLDSVFDFACGS 248

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +    V      H I  I   +GQE    T+ +    ML+  +     +D    I
Sbjct: 249 GSLLLN----VRRLMGPHGIGKI---YGQEKNITTYNLARMNMLLHGV-----KDSEFEI 296

Query: 277 QQGSTLSK--DLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG 327
             G TL    D+          +F   ++NPPF  +WE  +         GE  RF   G
Sbjct: 297 FHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEAL-------GEDVRFKNYG 349

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL++  I
Sbjct: 350 LAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLLKDGHI 402

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++  +  +
Sbjct: 403 DTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF----ERGKRQNQLLPE 455

Query: 448 QRRQILDIYVSR-ENGKFSR 466
              +I+D Y  R E  ++SR
Sbjct: 456 HIDKIIDTYRYRKEEPRYSR 475


>gi|254414884|ref|ZP_05028648.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196178373|gb|EDX73373.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 484

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 118/295 (40%), Gaps = 68/295 (23%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE L+ +  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 123 LGDIYEGLLEKNANEKKAGAGQYFTPRPLI----------DSMVRVMRPTLDDIIQDPAA 172

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGMLIRR 263
           GTGGFL  A  ++ +    H  P                +G E   +TH + +  +++  
Sbjct: 173 GTGGFLIAANRYIRE----HSNPNSWTNKQNNKYHGNTFYGMEHVQDTHRLALMNLILHG 228

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L+S P+      IQ G TLS D          L+NPPFG K                   
Sbjct: 229 LDSAPQ---GAGIQYGDTLSPDGQALPPATLILTNPPFGSK------------------- 266

Query: 324 FGPGLPKISD-------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            G GLP  SD           FL H+   L L P  GGRAA V   + LF    G    +
Sbjct: 267 KGGGLPNRSDFEFPTSNKQFCFLQHIY--LGLKP--GGRAAAVFPDNVLFESNVG---RQ 319

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           IR  L++   +  I+ LP+ +F+   + T +   +       RGK Q  N  ++W
Sbjct: 320 IRTALMDKCNLHTILRLPSGIFYAQGVKTNVLFFT-------RGKKQTGNTKEVW 367


>gi|89891080|ref|ZP_01202588.1| type I restriction-modification enzyme, M subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516724|gb|EAS19383.1| type I restriction-modification enzyme, M  subunit [Flavobacteria
           bacterium BBFL7]
          Length = 495

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 126/295 (42%), Gaps = 45/295 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           VM +IYE L+ +   E   GA  + TPR ++++ T LL          +P +     DP 
Sbjct: 124 VMGDIYESLLEKNAGEKKSGAGQYFTPRPLINIMTQLL----------APKLGERWNDPA 173

Query: 214 CGTGGFLTDA--------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            GT GF+  A         N+ A      K        G EL  + H + +    +  +E
Sbjct: 174 AGTFGFMIAADEYLRSKYENYYALRDKDRKFQKEQAFSGVELVGDAHRLALMNARLHGME 233

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           S+        I  G TL++       +   L+NPPFG K            K GE     
Sbjct: 234 SE--------IILGDTLTEMGKNLNGYDGVLANPPFGTK------------KGGEKPTRD 273

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S+  + FL H+   L+   +G  RAA+VL  + LF    G G+ +IRR L++  
Sbjct: 274 DFTFPTSNKQLNFLQHIYRSLK--KDGKARAAVVLPDNVLF--EDGDGQ-KIRRDLMDKC 328

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            +  I+ LPT +F+   + T +   +  KTE+   K   I   D+ T++ N GK+
Sbjct: 329 DLHTILRLPTGIFYAAGVKTNVLFFTRGKTEKNNTKG--IWFYDMRTNVPNYGKR 381


>gi|148977936|ref|ZP_01814489.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium
           SWAT-3]
 gi|145962882|gb|EDK28154.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium
           SWAT-3]
          Length = 496

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 52/296 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+   D+    +  +IYE +++   S  + G  +F T
Sbjct: 110 FSDAFNYMKNGTLLRQVINKLNEIDF-TDSSERHLFGDIYEQILKDLQSAGNAG--EFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHH 234
           PR V    T  ++D  D      P +  ++ DP  GTGGFL  + +HV D        H 
Sbjct: 167 PRAV----TRFIVDRLD------PKLGESIMDPATGTGGFLACSFDHVKDNYVKTAADHQ 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFH 293
            +   +  HG E +   H +C+  M++  +E      +   I+ G+TL+K L +     +
Sbjct: 217 TLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPVQIKHGNTLNKPLSSWDSNIN 268

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     ++D +EK           P   +  + + LFL  +   +E+     
Sbjct: 269 VIATNPPFGG---TEEDGIEKNF---------PAEMQTRETADLFLQLI---IEVLDENN 313

Query: 354 GRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           GRA +VL    LF    G G +++I++ L E   +  IV LP  +F      +TNI
Sbjct: 314 GRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVRLPNGVFNPYTGIKTNI 365


>gi|110679502|ref|YP_682509.1| type I restriction enzyme methyltransferase subunit, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455618|gb|ABG31823.1| type I restriction enzyme methyltransferase subunit, putative
           [Roseobacter denitrificans OCh 114]
          Length = 480

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 128/305 (41%), Gaps = 52/305 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS    +      L  + +   G+E +        +S++YE  I+R G+    G E + T
Sbjct: 122 FSEITNKFRSGYSLRDVLEIVDGLEFNTQEAKHE-LSDLYESRIKRMGNAGRNGGE-YYT 179

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC---GSHHKI 236
           PR ++     ++           P +  T+YD  CG+ GFL +A  H+       S +  
Sbjct: 180 PRPLIRAMIKVV----------DPKIGETVYDGACGSAGFLCEAYAHMLTTDISASDYST 229

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFH 293
                 +GQE +   + + +  M++  +        + NI++ +TL++   D+    R  
Sbjct: 230 LQTRTFYGQEKKSLAYIIGIMNMILHGI-------TAPNIRRTNTLTENVMDIQEKDRHD 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPN 351
             L+NPPFG               +GE        P I  G M  LF+ H   KL     
Sbjct: 283 VILANPPFG---------------SGERPEVQQNFP-IKSGEMAYLFMQHFIRKL----R 322

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT-YLWIL 410
            GGRAA+V+ ++ L NG A +    +RR LLE   +  ++  P  +F    + T  L+  
Sbjct: 323 AGGRAAVVIKNTFLSNGDAAA----LRRELLETCDLHTVLDCPAKVFQGAGVKTVVLFFE 378

Query: 411 SNRKT 415
             RKT
Sbjct: 379 KGRKT 383


>gi|89076110|ref|ZP_01162469.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp.
           SKA34]
 gi|89048186|gb|EAR53769.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp.
           SKA34]
          Length = 497

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 51/298 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+   D+    +  +IYE +++   S  + G  +F T
Sbjct: 110 FSDAFNYMKNGTLLRQVINKLNEIDF-TDSSERHLFGDIYEQILKDLQSAGNSG--EFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHH 234
           PR V       L           P +   + DP  GTGGFL  + +HV D        H 
Sbjct: 167 PRAVTRFIINRL----------DPKLGEAIMDPATGTGGFLACSFDHVKDNYVKTAADHQ 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFH 293
            +   +  HG E +   H +C+  M++  +E      +   I+ G+TL+K L +     +
Sbjct: 217 TLQKQI--HGVEKKQLPHLLCITNMMLHGIE------VPVQIKHGNTLNKPLSSWDSNIN 268

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPN 351
              +NPPFG     ++D +EK           P   +  + + LFL  +   L+      
Sbjct: 269 VIATNPPFGG---TEEDGIEKNF---------PAEMQTRETADLFLQLIIEVLDEGSETQ 316

Query: 352 GGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
            GGRA +VL    LF    G G +++I++ L E   +  IV LP  +F      +TNI
Sbjct: 317 NGGRAGVVLPDGTLF----GEGVKTKIKKMLTEECNLHTIVRLPNGVFNPYTGIKTNI 370


>gi|312869822|ref|ZP_07729964.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3]
 gi|311094668|gb|EFQ52970.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3]
          Length = 484

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 138/330 (41%), Gaps = 54/330 (16%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N+  I   +D +ST   +++   L KI  +  G++    +     +  +YE L+ +  +E
Sbjct: 86  NSPRINAIYDNAST--SIDEPANLEKIIHDIDGLDWF--SARQEGLGALYEGLLEKNANE 141

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
              GA  + TPR ++++   +            P +   L DP  GT GF+  A +++++
Sbjct: 142 TKSGAGQYFTPRPLINMMVRMT----------KPQVGERLNDPAAGTFGFMVAANDYLSE 191

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL P TH + +    +  +  D R D      QG +
Sbjct: 192 QTDEFFDLSQEDRKFEKEEAFSGMELVPNTHRLALMNQYLHGM--DGRLD------QGDS 243

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           LS      K F   L+NPPFG K            K GE         + S+  + FL  
Sbjct: 244 LSAAGKWMKNFDVVLTNPPFGTK------------KGGERATRDDLTYETSNKQLNFLQI 291

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + N L+   +G GRAA+V+  + LF    G+GE+ IR+ LL    +  I+ LPT +F+  
Sbjct: 292 IYNSLK--TDGHGRAAVVVPDNVLF--ADGTGEA-IRKDLLNKCNLHTILRLPTGIFYAQ 346

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLW 431
            + T +   +       RG     N  ++W
Sbjct: 347 GVQTNVLFFT-------RGASDTDNTKEIW 369


>gi|147920299|ref|YP_685930.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
 gi|110621326|emb|CAJ36604.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
          Length = 485

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 134/307 (43%), Gaps = 46/307 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+++   +   GA  + TPR ++     ++        +  PG   T+ DP 
Sbjct: 127 VKGEIYEGLLQKNAEDTKSGAGQYFTPRPLIKAMVDVI--------RPQPG--ETICDPA 176

Query: 214 CGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL  A ++++          K   +    G+++      +CV  + +  +  D  
Sbjct: 177 CGTGGFLLAAHDYISKKYQLDRDQKKFLKLNTFKGKDIVDNVARLCVMNLYLHGIGGD-- 234

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEHKNGE 320
                 +  G  L  D   G RF   L+NPPFGKK          + D++A+  E ++  
Sbjct: 235 ---ESPVDVGDALVAD--PGDRFDIILTNPPFGKKSSITIVNGDGKGDREALVYERQD-- 287

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                      S+  + FL H+   L++     G+ AIV+  + LF G  G+GE+   + 
Sbjct: 288 ------FWATTSNKQLNFLQHVKTLLKI----NGKCAIVVPDNVLFEG--GAGETVRHKL 335

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+E D +  ++ LPT +F+   +   + +  +R+   +  + Q +   DL T++    K 
Sbjct: 336 LMECD-VHTLLRLPTGIFYAQGVKANV-LFFDRRPASKDPQTQKLWIYDLRTNMHFTLKT 393

Query: 441 RRIINDD 447
             +  DD
Sbjct: 394 NPLKYDD 400


>gi|21227771|ref|NP_633693.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906175|gb|AAM31365.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 498

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 112/254 (44%), Gaps = 33/254 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE L+++   +   GA  + TPR ++ +    L           P  ++T+ DP CGTG
Sbjct: 131 IYEGLLQKNAEDTKSGAGQYFTPRPLIKVMVQCL----------QPEPMKTIGDPCCGTG 180

Query: 218 GFLTDAMNHVADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GF   A + +    SHH++              G E+   T  + +  M +  +      
Sbjct: 181 GFFLAAYDFLT---SHHRLDRDQSRFLKNKTFGGNEIVAGTRRLALMNMFLHNI---GEI 234

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-P 329
           D    I     L  D   G R+ Y L+NPPFGKK        E E +  EL         
Sbjct: 235 DGEPMISNSDALIAD--PGYRYDYILTNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWT 292

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+  + FL H+   L+     GG+AA+VL  + LF G  G+GE+ IR+ LLE   +  
Sbjct: 293 TTSNKQLNFLQHIHTILKT----GGQAAVVLPDNVLFEG--GAGET-IRKKLLETTDLHT 345

Query: 390 IVALPTDLFFRTNI 403
           I+ LPT +F+   +
Sbjct: 346 ILRLPTGIFYANGV 359


>gi|163785377|ref|ZP_02180005.1| type I restriction-modification system specificity subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879355|gb|EDP73231.1| type I restriction-modification system specificity subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 217

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 45/229 (19%)

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI---YP 528
            FGY +I V RPLR+  +L    L   E  I  +K         L++LK + + +   Y 
Sbjct: 2   AFGYYKITVERPLRLKVVLSDENLKSFEEAIKSKKKKKEADYRLLEVLKDISKDLTDEYI 61

Query: 529 YGWAESFVKESIKSNEAKTLKVKA-SKSFIVAFINAFGRKDPRADPVT------------ 575
           Y +      + ++  E K +K+ + +K  I  ++     KD  A PV             
Sbjct: 62  YDF-----NKFLRLIEKKGIKINSENKKLIQKYLT---EKDENAKPVIKEIYKNKEADRL 113

Query: 576 ------DVNG-----EWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPDAYIDKIFID 622
                 D++G     E+ PDT+L   ENVP LE   I+ +F REV P+V DA+I+K  I 
Sbjct: 114 YGFFEIDIDGKKVVVEYEPDTDLRNTENVPLLEEGGIEGFFEREVLPYVTDAWINKDNI- 172

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                  ++GYEI+F ++FY+ +  R+L +I  +LK ++ +   LL+E+
Sbjct: 173 -------KIGYEISFTKYFYKPEKLRELDEIVLDLKNLQEETEGLLDEI 214


>gi|325680236|ref|ZP_08159798.1| type I restriction-modification system, M subunit [Ruminococcus
           albus 8]
 gi|324108053|gb|EGC02307.1| type I restriction-modification system, M subunit [Ruminococcus
           albus 8]
          Length = 875

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 140/328 (42%), Gaps = 51/328 (15%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+LI  F +   + A +F TP +V  L + ++     A        I+ +YDPT G+G
Sbjct: 189 IYEYLIENFAANAGKKAGEFYTPHEVSLLMSEIV-----AYHLRDRKEIK-IYDPTSGSG 242

Query: 218 GFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
             L +     A   G+ + I      + QEL+  T+ +    +++R ++++         
Sbjct: 243 SLLINIGKSAARYMGTGNNI----AYYAQELKQNTYNLTRMNLVMRGIKAN-----MIET 293

Query: 277 QQGSTLSKD---------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           + G TL  D                +        +SNPP+ + W  D D  E + +    
Sbjct: 294 RCGDTLEDDWPYFSEDDKGVKIEGTYDPLYVDAVVSNPPYSQNW--DPDGKENDDRYS-- 349

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
              G G+   S     FL+H    ++      G   I+L    LF G     E EIRR L
Sbjct: 350 ---GYGVAPKSKADYAFLLHDLYHIK----SDGIMTIILPHGVLFRG---GEEGEIRRNL 399

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E + I+AI+ LP ++FF T I T + +L   +  +    V +I+A+         GK  
Sbjct: 400 IERNRIDAIIGLPANIFFGTGIPTIIMVLKKNRIND---DVLIIDAS---KGFEKAGKSN 453

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLD 469
           ++   D RR    +   R+  K+SR ++
Sbjct: 454 KLRASDIRRITDTVIDRRDVPKYSRKVN 481


>gi|237744713|ref|ZP_04575194.1| type I restriction modification system M subunit [Fusobacterium sp.
           7_1]
 gi|229431942|gb|EEO42154.1| type I restriction modification system M subunit [Fusobacterium sp.
           7_1]
          Length = 498

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 137/311 (44%), Gaps = 46/311 (14%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VM 155
           RN    +I +  D+ +++F  +   + I ++    +L         I  +P  V D+   
Sbjct: 93  RNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTK 151

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  +    G   F TP+ ++++   L+           P +   + DP CG
Sbjct: 152 GDLYEYLLSKLSTSGKNGQ--FRTPKHIINMMVELM----------KPTVQDKIIDPACG 199

Query: 216 TGGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL  ++ ++        A     +K     + HG + +     +    +L+  +++ 
Sbjct: 200 TSGFLVSSIEYIKRNFRDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMKT- 258

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           P+      +++  +LS D      +   L+NPPF       K ++++   +  L R    
Sbjct: 259 PK------LKRIDSLSTDFNEENDYTLVLANPPF-------KGSIDESLLSNTLTR---- 301

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ +
Sbjct: 302 VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLFG--ASNAHKNLRKELIENNQL 355

Query: 388 EAIVALPTDLF 398
           EA++++P+ +F
Sbjct: 356 EAVISMPSGVF 366


>gi|169634836|ref|YP_001708572.1| DNA methylase M, host modification [Acinetobacter baumannii SDF]
 gi|169153628|emb|CAP02820.1| DNA methylase M, host modification [Acinetobacter baumannii]
          Length = 509

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 139/346 (40%), Gaps = 55/346 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  +    S IE H   V      ++Y  LI +   +   GA  + TPR +++    L+ 
Sbjct: 103 LKAVIDGISEIEWH--QVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSLINSIIRLI- 159

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI---PPILVPHGQELEP 249
                     P +   + DP  G+GGFL  A +++    S  +    PP     G E+E 
Sbjct: 160 ---------QPNLGDLIQDPATGSGGFLVSADSYIRTKSSQEEYQASPPKY--QGVEIEK 208

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +C+    +  L++        NI  G  L+ D+         L+NPPFG       
Sbjct: 209 NTRRICLMNTFLHHLDA--------NIVYGDALTDDVLKLDDPDIILANPPFG------- 253

Query: 310 DAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 +K G        LP   ++  + FL H+   L+     GGRAA+VL  + LF  
Sbjct: 254 ------NKAGSQRPLRSDLPFPNTNKQLAFLQHIYLSLK----AGGRAAVVLPDNVLFES 303

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
             G   +++R+ L+    +  I+ LPT +F+   + T +   +   T+++    Q  N T
Sbjct: 304 GIG---TDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSTKDKH---QQENCT 357

Query: 429 ------DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                 DL T++ + GK+    N D      D       G F R+ 
Sbjct: 358 ENVWIYDLRTNMPSFGKRTPFGNADIGFLPEDFGTDSHLGAFERVF 403


>gi|313620399|gb|EFR91801.1| type I restriction-modification system, M subunit [Listeria innocua
           FSL S4-378]
          Length = 529

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 51/326 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S+IYE+L+ +F + ++     + TP+++ ++   +L    + + K S      ++DPT
Sbjct: 167 TVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFS------IFDPT 220

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    +++ + G       ++  +GQE +   + +    +++  +E +      
Sbjct: 221 VGSGSLLLTTASYMKNSGRR----GVIKYYGQEKDATPYRLSRMNLMMHGIEYN-----D 271

Query: 274 KNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELG 322
            NI    TL  D   G        + F   ++NPP+   W   +++ D   +E+      
Sbjct: 272 ININHADTLESDWPDGVVDGKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREY------ 325

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   +     FL+H    LE      GR AI+L    LF G   + E  IR+ L+
Sbjct: 326 ----GVSPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRG---ASEGRIRKSLI 374

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   IEAI+  P  LF    I   + IL   + E     V  I+A+  +     + KK+ 
Sbjct: 375 DKHQIEAIIGFPEKLFLNAAIPVCVVILRKNRIE---SDVLFIDASKEF----EKTKKQN 427

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRM 467
            +  +   +I+D  ++R E  K+S +
Sbjct: 428 SLRSEDVDKIVDTVINRKEIDKYSHL 453


>gi|260549263|ref|ZP_05823483.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
 gi|260407669|gb|EEX01142.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
          Length = 492

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 61/318 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L++  G +    A +F TPR VV  A    +DP        PG   T+YD   
Sbjct: 161 LSLVYEGLLQNMG-DAGGYAGEFYTPRPVVR-AMVQAIDP-------KPG--ETIYDAAA 209

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAGMLIRRLESDPR 269
           G+ GFL +A  H+ D  +                G E     + + +  M++  +E    
Sbjct: 210 GSCGFLVEAFEHLRDKKNQLSTEQWDFIQRDTLFGYEKTSLAYVMGMMNMILHGIE---- 265

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              S N+ +G+TL+   +D+    R+   L+NPPFG K               E  +   
Sbjct: 266 ---SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGK---------------EKSQIQQ 307

Query: 327 GLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             P  S+ + +LFL H    L+     GG+AAIV+    LF  +  S   ++++ LLEN 
Sbjct: 308 NFPIQSNATELLFLQHFMKTLK----SGGKAAIVVPEGVLF--QTNSAFKQVKQELLENF 361

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRNEGKKRR 442
            +  I++LP  +F       Y  + +N    ER G       +D+W        +  K +
Sbjct: 362 NLHTILSLPAGVFL-----PYSGVKTNVLFFERSG-----GTSDVWYYECEPEQKLTKNK 411

Query: 443 IINDDQRRQILDIYVSRE 460
            I D+  ++ +++Y SRE
Sbjct: 412 PITDEHLKEFVELYKSRE 429


>gi|323697974|ref|ZP_08109886.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio sp. ND132]
 gi|323457906|gb|EGB13771.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio desulfuricans ND132]
          Length = 478

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 47/294 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR ++ +   L+           P     + DP  
Sbjct: 123 LGDLYEGLLEKNATESKRGAGQYFTPRRLIEVMVELM----------QPQAGEVIQDPAA 172

Query: 215 GTGGFLTDAMNHVAD-CGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLIRRLES 266
           GTGGFL +A  ++ +  G+ + +P             G EL  + H +C+  +++  +E+
Sbjct: 173 GTGGFLINADAYIRERTGNLYNLPESKQNFQRRQAFQGMELVQDVHRLCLMNLMLHGIET 232

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    I  G TL     +  +    L+NPPFG        A    H   E   F  
Sbjct: 233 P--------IALGDTLGPQGASMPKADVILTNPPFGT-------ATGGGHTRREDFTF-- 275

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                ++  + FL H+   L+     GGRAA+VL  + LF    G    +IR  L++   
Sbjct: 276 ---PTNNRQLAFLQHVYRGLK----PGGRAAVVLPDNVLFEDNTG---RKIRTDLMDKCN 325

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +  I+ LPT +F+   + T   +L  ++ E  +G  + +   DL T++ + GK+
Sbjct: 326 LHTILRLPTGIFYAQGVKTN--VLFFQRGETDKGNTKAVWVYDLRTNMPSFGKR 377


>gi|301170025|emb|CBW29629.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 314

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 26/223 (11%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D 
Sbjct: 9   VYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDF 65

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
            +  + +  Q   + K      +  + ++NPPF    W  +  A +         R+  G
Sbjct: 66  GKHNADSFTQPQHIDK------KMDFIMANPPFNISDWWSESLADDP--------RWAYG 111

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+     L PNG  + A++L++  +      + E EIR+ ++  DL+
Sbjct: 112 TPPKGNANFAWLQHMI--YHLSPNG--KMALLLANGSM--SSQTNNEGEIRKAIINADLV 165

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +
Sbjct: 166 ECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQI 206


>gi|282907753|ref|ZP_06315595.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328658|gb|EFB58929.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 237

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 24/218 (11%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  
Sbjct: 19  GQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDAVIANPPYSA 73

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           KW  D      E  +G    +G   PK S     F+ H+ + L+      G  A+VL   
Sbjct: 74  KWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD----DEGTMAVVLPHG 124

Query: 364 PLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            LF G A   E  IRR+L+ E + +EA++ LP ++F+ T+I T   IL  +K  ++   V
Sbjct: 125 VLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CILVFKKCRQQDDNV 179

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             I+A++ +     +GK +  ++D Q  +I+D Y  +E
Sbjct: 180 LFIDASNDFE----KGKNQNHLSDAQVERIIDTYKRKE 213


>gi|126175909|ref|YP_001052058.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125999114|gb|ABN63189.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 547

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 193/499 (38%), Gaps = 72/499 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------------ 58
           L   +W  A+ L G     DF   +L F  LR L    E  ++A +E             
Sbjct: 9   LGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYE--KAAQKELGRDYPILAKDDK 66

Query: 59  ----YLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLGSTNTRNNLESYIA---- 105
                L +     D+  F K      +   E      S++ L  T     L++  A    
Sbjct: 67  TAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTLEAGFKY 126

Query: 106 ----SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIY 159
               SF  + K +F + + +S            K+C     I   +   +    ++ + Y
Sbjct: 127 IEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKLCTIIQKISEGIAEFSTDSDILGDAY 186

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ +  + + ++              +  + D  CG+G  
Sbjct: 187 EYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFACGSGSL 246

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L +   H+ D G       +   +GQE    T  +    ML+  +     +D    I  G
Sbjct: 247 LLNVRKHIVDAGG-----TVGKIYGQEKNITTFNLARMNMLLHGV-----KDTEFEIHHG 296

Query: 280 STLSKD------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK 330
            TL  D      +   K+      ++NPPF  +W+  +         GE  RF   GL  
Sbjct: 297 DTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSE-------AQGEDFRFKSHGLAP 349

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H  + L    +  G  AI+L    LF G A   E  IR+ LL +  I+ +
Sbjct: 350 KSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGA---EQRIRKKLLNDGHIDTV 402

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR- 449
           + LP +LFF T I   + +L   K   +   +  INA++ +   + + K R    D+   
Sbjct: 403 IGLPANLFFSTGIPVCIIVLKKCK---KYDDILFINASEHYEKGKRQNKLREGKGDEPND 459

Query: 450 -RQILDIYVSR-ENGKFSR 466
            ++I++ Y  R E+ ++SR
Sbjct: 460 IKKIVETYQYRSEDERYSR 478


>gi|237729542|ref|ZP_04560023.1| N4/N6-methyltransferase [Citrobacter sp. 30_2]
 gi|226908148|gb|EEH94066.1| N4/N6-methyltransferase [Citrobacter sp. 30_2]
          Length = 515

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 41/314 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ +V L   +L           P   R ++DP 
Sbjct: 159 VLGHVFEYFLGEFALAEGKQGGQFYTPKSIVSLLVNML----------EPYKGR-VFDPC 207

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    +H      +  +GQE    T  +    + IR + S+  R  S
Sbjct: 208 CGSGGMFVQSEKFVE---AHQGNIDDISIYGQESNQTTWRLAKMNLAIRGINSEHVRWNS 264

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
               +GS L+ D     +  + ++NPPF    W         E   G+  R+  G+P   
Sbjct: 265 ----EGSFLN-DAHKDLKSDFIIANPPFNVSDWSG-------EQLRGD-ARWQYGIPPTG 311

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
           + +  ++ H      L P G  +A +VL+   L +    SGE +IR  L+++ ++I+ IV
Sbjct: 312 NANFAWMQHFL--YHLSPKG--QAGVVLAKGALTS--KSSGEGDIRAALVKDANVIDCIV 365

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDD 447
            LP  LF  T I   LW +  R+  E   + +  +   L+   RN G    ++ ++++DD
Sbjct: 366 NLPAKLFLNTQIPAALWFM--RRDRENSSQYRDRSKEILFIDARNLGHLINRRTKVLSDD 423

Query: 448 QRRQILDIYVSREN 461
             + I D Y +  N
Sbjct: 424 DIKTIADTYHNWRN 437


>gi|77165284|ref|YP_343809.1| hypothetical protein Noc_1809 [Nitrosococcus oceani ATCC 19707]
 gi|254434165|ref|ZP_05047673.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|76883598|gb|ABA58279.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090498|gb|EDZ67769.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 849

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 37/268 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 202 ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML----------EPYSGR-VYDPA 250

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDP 268
            G+GGF   +   + +        P      +  +GQE  P T  +    M IR +    
Sbjct: 251 MGSGGFFVSSDKFIEEHAKEQHYDPAEQKKHISVYGQESNPTTWKLAAMNMAIRGI---- 306

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             D +   +   T   D     R  + ++NPPF  K W  +  A +         R+  G
Sbjct: 307 --DFNFGKKNADTFLDDQHPDLRADFVMANPPFNMKDWWSESLADD--------ARWQYG 356

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  ++ H+ +   L P G    A++L++  +      + E +IR+ L+E DL+
Sbjct: 357 TPPKGNANFAWMQHMIH--HLAPTGS--MALLLANGSM--SAHTNNEGKIRQRLIEEDLV 410

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT 415
           E +VALP  LF  T I   +W L+  K 
Sbjct: 411 ECMVALPGQLFTNTQIPACIWFLTKDKA 438


>gi|254787777|ref|YP_003075206.1| typeI restriction-modification system, methylase subunit
           [Teredinibacter turnerae T7901]
 gi|237683921|gb|ACR11185.1| putative TypeI restriction-modification system, methylase subunit
           [Teredinibacter turnerae T7901]
          Length = 716

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 148/355 (41%), Gaps = 66/355 (18%)

Query: 145 LHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           L+PD +      +   IYE+ + +F  + +    +F TP  +V L    +L+PD      
Sbjct: 143 LNPDELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFTPVSLVQLIVN-VLEPDHG---- 197

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  ++DP CG+GG    + + +     H + P  L  +G E    T  +    + +
Sbjct: 198 ------KIFDPACGSGGMFVQSAHFME---RHAQDPHELTFYGHEKNRVTTRLAKMNLAV 248

Query: 262 RRLESDPRRDLSKNIQQGS------TLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVE 313
             LE         N++ G       T +++   G      Y ++NPPF      + D V+
Sbjct: 249 HGLEG--------NVEGGEAAITYYTFAQEPHEGLFGTADYVMANPPF------NVDEVD 294

Query: 314 KEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            E    +  R   GLP      K+S+ + L++ +  + L    N  GRA  V+SS     
Sbjct: 295 AEKIKADKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----NDTGRAGFVMSSQA--- 347

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
             AG  E+++R  L++   ++ +V +  + F+   +   LW L+  K    + KV +++A
Sbjct: 348 SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNKNKPAYLKDKVLMLDA 407

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            +++  +               R+I D    ++    + +  YR  G R I +L+
Sbjct: 408 RNVYRKV--------------TRKIYDFSPEQQQNLTAVVWLYRGEGARFIALLQ 448


>gi|283786953|ref|YP_003366818.1| type I restriction modification system HsdM component [Citrobacter
           rodentium ICC168]
 gi|282950407|emb|CBG90057.1| putative type I restriction modification system HsdM component
           [Citrobacter rodentium ICC168]
          Length = 500

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 44/305 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++++      +GA  + TPR ++  A    +DP+          ++T+ DP 
Sbjct: 126 VKGAIYEGILQKSADTEKKGAGQYFTPRALIE-AIVEAVDPEP---------MQTIADPA 175

Query: 214 CGTGGFLTDAMNHV-----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--LES 266
           CGTGGFLT A +++      +    H         G E+      +C   + +    + S
Sbjct: 176 CGTGGFLTVAHDYIFNKIDKNEVDKHSFLRNSTFSGNEISSSVARLCAMNLYLHEIGIYS 235

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK----WEKDKDAVEKEHKNGELG 322
           +P       I     L       K+    L+NPPFG+K       DK  ++ ++   +  
Sbjct: 236 NP-------ISVSDALESK--PSKKVDIVLANPPFGRKSTFTINIDKSKIDNKYIRDDF- 285

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  + ++  + FL H+ N L+      G+AA+V   + LF+  +G+GE +IRR LL
Sbjct: 286 -----WVETTNKQLNFLQHICNMLK----KDGKAAVVFPDNILFD--SGAGE-KIRRKLL 333

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   +  ++ LPT +F+   +   +    N   +++R + + +   DL TSI    K  +
Sbjct: 334 DEYNLHTVLRLPTGIFYAQGVKANVLFFDNC-IDKKRPRTEKVWFYDLRTSIHKTFKHNK 392

Query: 443 IINDD 447
           +I  D
Sbjct: 393 LIRSD 397


>gi|237798537|ref|ZP_04586998.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021390|gb|EGI01447.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 540

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 202/504 (40%), Gaps = 96/504 (19%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRSAV 55
            L   +W  A+ L G     DF   +L F  LR L    E              PT   V
Sbjct: 8   QLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDYPELPTDVLV 67

Query: 56  REKYLA-----FGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLGSTNTRNNLESYIA 105
           ++         +  +  D+ +F K      +   E      S++ +  T     L +  A
Sbjct: 68  KKGAATPLQVWYQENKADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQNGELLSTLQA 127

Query: 106 --------SFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIE--LHPDTV 150
                   SF    + +F + +  S     +K G  Y     K+C     I   L+  + 
Sbjct: 128 GFKYIETESFESTFQGLFSEINLGS-----DKLGRTYVDRNAKLCTIIQKIAEGLNEFST 182

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM-IRT 208
               + + YE+LI +F +   + A +F TP+ +  + +A++ LD  +   K  P   + +
Sbjct: 183 DIDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEP--KTGPKKRLES 240

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    V      H +  I   +GQE    T+ +    ML+  +    
Sbjct: 241 VLDFACGSGSLLLNVRKRVGP----HGVGKI---YGQEKNITTYNLARMNMLLHGV---- 289

Query: 269 RRDLSKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKW---EKDKDAVE-KEH 316
            +D    I  G TLS D      L   K+  F   ++NPPF  +W   E   D V  K H
Sbjct: 290 -KDTEFEIYHGDTLSNDWDILRELNPAKKPAFDAIVANPPFSYRWNPTEAMADDVRFKNH 348

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                     G+   S     FL+H  + L+      G  AI+L    LF  R+G+ E  
Sbjct: 349 ----------GVAPKSAADFAFLLHGFHFLK----DEGVMAIILPHGVLF--RSGA-EER 391

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  LL++  I+ ++ LP++LF+ T I   + +L   K  +    V  INA + +     
Sbjct: 392 IRTKLLKDGHIDTVIGLPSNLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHFA---- 444

Query: 437 EGKKRRIINDDQRRQILDIYVSRE 460
           +GK++  + ++   +I+  Y +RE
Sbjct: 445 KGKRQNQLTEEHIAKIISTYQTRE 468


>gi|206889888|ref|YP_002249480.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741826|gb|ACI20883.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 485

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 127/280 (45%), Gaps = 49/280 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE L+++   +V  GA  + TPR ++  A    + P+       PG  +T++DP 
Sbjct: 127 IKGEIYEGLLQKNAEDVKGGAGQYFTPRPLIK-AIVECISPE-------PG--QTIHDPA 176

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRL--ESD 267
           CGTGGFL  A  +++      K     + +    G+++      +CV  + +  +  E  
Sbjct: 177 CGTGGFLLAAHEYISKNYRLDKEQKRFLKYNTFSGRDIVDSVVRLCVMNLYLHGIGGEES 236

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEHKN 318
           P       I  G +L  D  TG+R+   L+NPPFGKK          + D++++  E ++
Sbjct: 237 P-------IATGDSLISD--TGERYDIILTNPPFGKKSSITIVNGEGKADRESLTYERRD 287

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                        S+  + FL H+    ++     G+ A+V+  + LF G  G+GE+ IR
Sbjct: 288 --------FWATTSNKQLNFLQHVKTITKI----NGKVAMVVPDNVLFEG--GAGET-IR 332

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           R LL    +  ++ LPT +F+   +   +     +   E+
Sbjct: 333 RKLLAECDVHTLLRLPTGIFYAQGVKANVLFFDRKPASEK 372


>gi|154500306|ref|ZP_02038344.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC
           29799]
 gi|150271038|gb|EDM98312.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC
           29799]
          Length = 622

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 155/371 (41%), Gaps = 46/371 (12%)

Query: 76  AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIAR---LEKA 130
           A Y++      ++   G TN R  + + +    +NA  + E      S  + +   +   
Sbjct: 84  AQYAYLVELPENIPAAGLTNWRGEVMNSLGEVVNNAMELVEQQSEQLSGVLPKDYTMFSD 143

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            LL ++ + F+   L  D V   ++  IYE+ + +F   +++    F TP+ +V +   +
Sbjct: 144 ELLAELLRIFNNSAL--DEVGGDIVGRIYEYFLNKFAKNIAQDDGVFFTPKSLVKMIVNV 201

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L +P   +          L DP CG+GG      + V   G        +  +GQE    
Sbjct: 202 L-EPTQGI----------LLDPACGSGGMFVQTGDFVEHAGMLAN--NTMTFYGQEKVEY 248

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF-HYCLSNPPFGKKWEKDK 309
              +C+  + +  L       + K+  + +T   D    +    Y ++NPPF      + 
Sbjct: 249 NAKLCLMNLAVHGLNG-----IVKSGDEANTFYHDAHNLEGCCDYVMANPPF------NV 297

Query: 310 DAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           D V+ E      GR   GLP      +I +G+ L++ +    L    N  GRA  V++SS
Sbjct: 298 DKVKSESAQSA-GRLPFGLPSVNKNKEIGNGNYLWISYFYAYL----NEQGRAGFVMASS 352

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
                 +   + +IR  L++   +  +V++  + F+  ++   LW     K EE R KV 
Sbjct: 353 AT---DSQGKDKDIREQLVKTGHVAVMVSVGNNFFYTKSLPCSLWFFDKGKREELRDKVL 409

Query: 424 LINATDLWTSI 434
            I+A + +T +
Sbjct: 410 FIDARNYYTVV 420


>gi|120435035|ref|YP_860721.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117577185|emb|CAL65654.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 547

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 161/377 (42%), Gaps = 62/377 (16%)

Query: 106 SFSDNAKAIFEDFDFSS-TIARLEK------AGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           SF      +F + + +S  + + EK        ++ KI +  +      DT+ D      
Sbjct: 137 SFESTFHGLFSEINLNSEKLGKSEKERNDKLCTIIQKIAEGIAEFSTDIDTLGD-----A 191

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESP-GMIRTLYDPTCGT 216
           YE+LI +F +   + A +F TP++V   L+  + LD         P   +  + D  CG+
Sbjct: 192 YEYLIGKFAAGSGKKAGEFYTPQEVSSVLSQIVTLDAQKPDHTSGPKDKLNNVLDFACGS 251

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +    + D G   +I  I   +GQE    T+ +    ML+  +     +D    I
Sbjct: 252 GSLLLNVRRRIKDNGG--RIGKI---YGQENNITTYNLARMNMLLHGM-----KDTEFEI 301

Query: 277 QQGSTLSK------DLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-G 327
             G TL        ++   K+  F   ++NPPF  +WE  +         GE  RF   G
Sbjct: 302 FHGDTLKNQWDILNEMNPSKKVEFDAIVANPPFSLRWEPTETL-------GEDFRFKSYG 354

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L    +  G  AI+L    LF  R+G+ E  IR  LL++  +
Sbjct: 355 LAPKSAADFAFLLHGFHFL----SQNGTMAIILPHGVLF--RSGA-EERIRTKLLKDGNV 407

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LF+ T I   + ++   K   R   V  INA+        EG  ++  N +
Sbjct: 408 DTVIGLPANLFYSTGIPVCILVIKKCK---RESDVLFINAS-------AEGNYKKSKNQN 457

Query: 448 QRRQ-----ILDIYVSR 459
           + R+     I++ Y SR
Sbjct: 458 ELRKSDIKNIIETYKSR 474


>gi|191639033|ref|YP_001988199.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|190713335|emb|CAQ67341.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|327383093|gb|AEA54569.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei LC2W]
 gi|327386277|gb|AEA57751.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei BD-II]
          Length = 329

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 36/257 (14%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+YDPT G+G  L +A  +  +  S +         GQEL   T+ +    M++  +  +
Sbjct: 20  TIYDPTMGSGSLLLNARRYSNERLSINYF-------GQELNTSTYNLARMNMILHGVPIN 72

Query: 268 PRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF- 324
                ++++    TL +D  +     F   + NPP+   W+  K   E +       RF 
Sbjct: 73  -----NQHLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSK-GTEND------PRFV 120

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GL   S     FL+H    L+      G   IVL    LF G A   E  IR+ LLEN
Sbjct: 121 SYGLAPKSKADFAFLLHGYYHLK----DTGVMCIVLPHGVLFRGGA---EGRIRKALLEN 173

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ ++ LP ++FF T+I T + +L   +T      V  I+A+  +   +N+      +
Sbjct: 174 GAIDTVIGLPANIFFNTSIPTTVTVLKKSRTTR---DVLFIDASKEFEKAKNQNH----L 226

Query: 445 NDDQRRQILDIYVSREN 461
            DD  ++IL+ Y++R++
Sbjct: 227 TDDNIQKILETYINRKD 243


>gi|323494429|ref|ZP_08099538.1| type I restriction-modification system methyltransferase subunit
           [Vibrio brasiliensis LMG 20546]
 gi|323311359|gb|EGA64514.1| type I restriction-modification system methyltransferase subunit
           [Vibrio brasiliensis LMG 20546]
          Length = 520

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 43/288 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS    R+    LL  +    +GI  +  +     +S +YE ++R       +  E F T
Sbjct: 139 FSGLHNRMLNGYLLRDVIDKVNGIHFN-SSEEMHTLSRLYETMLREMRDAAGDSGE-FYT 196

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV     +            P +  ++ DP CGTGGFL +A++++       +   +
Sbjct: 197 PRPVVRFMVEV----------TKPKLGESVLDPACGTGGFLVEALSYLEGQCETVEDRAM 246

Query: 240 LVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFH 293
           L      G E +P  + +    +L+  LE          I  G++L    +++    R  
Sbjct: 247 LQGSSIFGGEPKPLPYLLVQMNLLLHGLE-------YPQIDSGNSLRFPLREMGDKDRVD 299

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG- 352
             L+NPPFG + EK           G LG F P   + ++ ++LFL  +  KL+ P  G 
Sbjct: 300 VILTNPPFGGEEEK-----------GILGNF-PDDMQTAETALLFLQLIMRKLKRPGQGS 347

Query: 353 --GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             GGRAA+V+ +  LF    G   + I+  LL+N  +  IV LP  +F
Sbjct: 348 DAGGRAAVVVPNGTLFCDGVG---ARIKEELLKNFNLHTIVRLPEGVF 392


>gi|262373387|ref|ZP_06066666.1| N-6 DNA methylase [Acinetobacter junii SH205]
 gi|262313412|gb|EEY94497.1| N-6 DNA methylase [Acinetobacter junii SH205]
          Length = 491

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 142/325 (43%), Gaps = 51/325 (15%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHL 162
           +A  +D+ +A      F+     ++  GL+ K+      G + +  +       +IYE L
Sbjct: 97  LAVENDDPRARVVQNVFADAYNYMKSGGLIRKVINQIQRGFDFNK-SKERHAFGDIYEQL 155

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R   +  + G  +F TPR V      ++           P +  ++ DP CGTGGFLT 
Sbjct: 156 LRDLQAAKNSG--EFYTPRAVTTFMAQMI----------DPQLGESVLDPACGTGGFLTS 203

Query: 223 AMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           A+ H            KI    + +G E +P  H +C   M++  +      D+   I +
Sbjct: 204 AIEHKRENYVQTAEDEKILQNSI-YGIEKKPLPHLLCTTNMILHGI------DVPVKIIR 256

Query: 279 GSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +TLS  L      KR    L+NPPFG   E+    +EK           P   +  + +
Sbjct: 257 DNTLSYSLNHWVKEKRVDVVLTNPPFGGTEEQ---GIEKNF---------PSKFQTRETA 304

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALP 394
            LF++ +   L+      GRAA+VL    +F    G G ++ I+  L+E+  +  IV LP
Sbjct: 305 DLFMVLIIQLLK----AHGRAAVVLPDGFMF----GEGIKTAIKEKLMEDCNLHTIVRLP 356

Query: 395 TDLFF-RTNIAT-YLWILSNRKTEE 417
             +F   T+I+T  L+    +KTEE
Sbjct: 357 KSVFAPYTSISTNILFFTKGKKTEE 381


>gi|269838109|ref|YP_003320337.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
 gi|269787372|gb|ACZ39515.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
          Length = 507

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 36/278 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+ +   +V  GA  + TPR ++     ++        +  PG   T+ DP CGTGG
Sbjct: 135 YEGLLEKNARDVKGGAGQYFTPRPLIQAIVDVM--------RPQPG--ETICDPACGTGG 184

Query: 219 FLTDAMNHVADCGSH-----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP-RRDL 272
           FL  A N + +   H      K   +    G E+      +C   +L+  +   P   D+
Sbjct: 185 FLLAAHNSIVERYPHLDPEQRKHLKLHALRGVEIVDSVTRLCAMNLLLHGVGPGPAEADI 244

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-- 330
              ++ G +L+        F   L+NPPFG+     K +V   ++ G+  R    + +  
Sbjct: 245 EPPVRTGDSLNS--APSDHFDVVLTNPPFGR-----KSSVLVVNEEGQQEREALTVVRED 297

Query: 331 ----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + F+ H+ + L++     GRAA+V+  + LF G  G+GE+ IRR LL+   
Sbjct: 298 FWATTSNKQLNFVQHVKSLLKI----HGRAAVVVPDNVLFEG--GAGET-IRRKLLQECD 350

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           +  ++ LPT +F+   +   +     +   E+    QL
Sbjct: 351 VHTLLRLPTGIFYAQGVKANVLFFDRKPPREQPWTSQL 388


>gi|327403690|ref|YP_004344528.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319198|gb|AEA43690.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 510

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 147/335 (43%), Gaps = 61/335 (18%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPD 152
           TNT + +  +I S   + K++F  +   +T   + K  +L ++ +    I++ + DT  D
Sbjct: 87  TNTVDGVFPFIRSLGKD-KSLFSVYMRGATFG-ISKPMVLDQVMEKLGNIDMSNQDTKGD 144

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                IYE+L+ +   E    A  F TPR ++ L   L+           P +  T+ DP
Sbjct: 145 -----IYEYLLSKL--EGGGTAGQFRTPRHIIKLMVELM----------RPTLEDTICDP 187

Query: 213 TCGTGGFLT------DAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +CG+ GFL       D  N V D    +HH    +   +G E +     +    + +  +
Sbjct: 188 SCGSAGFLVGAKEYIDKHNSVTDIDRAAHHINTEMF--NGMEFDATMLRIASMNLYLHGV 245

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E         NI     +SKD      +   L+NPPF  K   DKD++            
Sbjct: 246 E-------EPNIIDVDAVSKDNTISDAYTLVLANPPF--KGTIDKDSI------------ 284

Query: 325 GPGLPKISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             GL  ++D S   +LFL  +  +L+     GGR A+++    LF   +G     IR  +
Sbjct: 285 SAGLKNVTDTSKTELLFLALMLRQLK----SGGRCAVIVPDGVLFG--SGKAHKSIREEI 338

Query: 382 LENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           + N+ +EA++++P+ +F     ++T + I +  +T
Sbjct: 339 VANNKLEAVISMPSGVFKPYAGVSTAIMIFTKTET 373


>gi|187736397|ref|YP_001878509.1| type I restriction-modification system, M subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426449|gb|ACD05728.1| type I restriction-modification system, M subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 853

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 148/328 (45%), Gaps = 50/328 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++     A  K+   +   +YDPT
Sbjct: 164 VLGFIYEYLISNFAANAGKKAGEFYTPHEVSLLMSEIVA----AHLKDRQQI--KIYDPT 217

Query: 214 CGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  L +    VA   G    I      + QEL+  T+ +    +++R +   P   +
Sbjct: 218 SGSGSLLINIGKCVARYMGGGDNIKY----YAQELKENTYNLTRMNLVMRGIL--PNNIV 271

Query: 273 SKNIQQGSTLSKD-----------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           ++N   G TL +D            +        +SNPP+ + W    +  +KE      
Sbjct: 272 TRN---GDTLEEDWPYFDDNDPVNTYDPLYVDAVVSNPPYSQSW----NPADKESD---- 320

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  GL         FL+H  +   L P+G     IVL    LF G     E  IRR L
Sbjct: 321 PRYRFGLAPKGKADYAFLLH--DLYHLKPDG--IMTIVLPHGVLFRG---GTEGAIRRNL 373

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E + I+AI+ LP ++FF T I T + +L   K +     V +++A+  +  +     K 
Sbjct: 374 VEYNHIDAIIGLPANIFFGTGIPTIIMVL---KQKRENTDVLIVDASKGFAKV----GKN 426

Query: 442 RIINDDQRRQILDIYVSREN-GKFSRML 468
            ++     ++I+D+  +R +  KF++++
Sbjct: 427 NVLRACDIKKIVDVVSARADVEKFAKVV 454


>gi|257465993|ref|ZP_05630304.1| Type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917149|ref|ZP_07913389.1| type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691024|gb|EFS27859.1| type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 475

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 137/320 (42%), Gaps = 48/320 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + +   R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + T
Sbjct: 90  YRNAQTRIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFT 147

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR        +L+D    + K  P +  T+YDP  GT GF+ +A  ++ +  S       
Sbjct: 148 PR--------VLIDAIVRMIK--PELGETIYDPAAGTLGFIIEADKYLRNI-SQDYYGTA 196

Query: 240 LVPHGQELEPETHAVCVAGMLIR---RLESDPR--RDLSKNIQQGSTLSKDLFTGKRFHY 294
             P  +EL  +   V  A  L++   RL S       +  N  QG TLS+    GK+F +
Sbjct: 197 ENPISEELSQKYKKVFSACELVQDTHRLGSMNALLHGIGGNFLQGDTLSE---FGKQFSH 253

Query: 295 ---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               LSNPPFG K            K GE       +   S+  + FL  +   L +   
Sbjct: 254 FDIILSNPPFGTK------------KGGERATRDDLVYATSNKQLNFLEVIYRSLNV--T 299

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+V+  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +
Sbjct: 300 GKARAAVVVPDNVLFEGGVG---KEIRQDLLNKCDVHTILRLPTGIFYSQGVKTNVLFFT 356

Query: 412 NRKTEERRGKVQLINATDLW 431
                  RG     N  ++W
Sbjct: 357 -------RGTSDTNNTKEIW 369


>gi|325989583|ref|YP_004249282.1| putative type I restriction-modification system DNA methylase, HsdM
           [Mycoplasma suis KI3806]
 gi|323574668|emb|CBZ40321.1| probable type I restriction-modification system DNA methylase, HsdM
           [Mycoplasma suis]
          Length = 614

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 54/300 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE+ +  F  E       F TP+ +V++   +L           P   + L DP C
Sbjct: 162 LGEVYEYFLGHFSLEEKGDEGVFFTPKSLVNMIVNIL----------QPKGGKAL-DPFC 210

Query: 215 GTGGF---LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+GG    +   M    D   +       V  G EL P    +C   + +  ++      
Sbjct: 211 GSGGMFVGIKKYMERETDSTCNQD----FVFRGYELLPANVNICNMNLFMHNIQ------ 260

Query: 272 LSKNIQQGSTLSKDLFTGK-RFHYCLSNPPF---GKKWEKDKDAVEKEHKNGELGRFGPG 327
           ++  I+Q +T   DL   + +  Y LSNPPF   G   E+ K A          GR    
Sbjct: 261 INSVIKQCNTFENDLLDLEGKCDYVLSNPPFCVKGVNIERAKRA----------GRIPFA 310

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           LP+      ++   L + +  + L    N  G+A  V+  + L    A +G+ EIR+ ++
Sbjct: 311 LPRGNNESFTNADYLCIQYFYSYL----NDRGKAGFVMGKNSL----ASTGDKEIRKQII 362

Query: 383 ENDLIEAIVALPTDLFFRTNIA--TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           E   ++ I+ +  D FF++       LW  + +K EE+R K+  I+A++ ++ +++  K+
Sbjct: 363 ETKHVDIIIGV-ADKFFQSGFTGEVCLWFFNKQKIEEQRDKILFIDASNYFSQVKDNPKQ 421


>gi|241762635|ref|ZP_04760707.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372773|gb|EER62485.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 487

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 134/339 (39%), Gaps = 65/339 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     RL K   L  +  N   ++    +  +  + N+YE L+ +  S+   GA  + T
Sbjct: 90  FIDAQTRLRKPTNLKALTSNIDQLDWF--SAREEGLGNLYEGLLEKNASDKKSGAGQYFT 147

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA----MNHVADCGSHHK 235
           PR ++     L+           P     + DP  GT GFL  A     +H  D  +  K
Sbjct: 148 PRPLIDCIVRLM----------RPQAGEVIQDPAAGTAGFLVAADRYIKDHTDDLYTLTK 197

Query: 236 IPPILVPH----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  H    G EL P+TH + +  +L+  +E          ++   TLS D     +
Sbjct: 198 EQASFQRHNAFCGAELVPDTHRLSMMNLLLHGIEG--------GVENIDTLSPDGEALPK 249

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---------MLFLMHL 342
            +  L+NPPFG K                    G G P  SD S         + F+ H+
Sbjct: 250 ANLILTNPPFGTK-------------------KGGGRPTRSDFSITADTSNKQLAFVEHI 290

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L    + GGRAA+V+  + LF    G     +R WL++   +  I+ LPT +F+   
Sbjct: 291 VRAL----SPGGRAAVVIPDNVLFEDNTG---RRLRTWLMDLCDMHTILRLPTGIFYAQG 343

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           + T +      K++  +G  + +   D+  ++   GK R
Sbjct: 344 VKTNVLFFQRGKSD--KGNTKAVWFYDMRANMPAFGKTR 380


>gi|161870101|ref|YP_001599271.1| hypothetical protein NMCC_1140 [Neisseria meningitidis 053442]
 gi|161595654|gb|ABX73314.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 533

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLEGE-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI            LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKAKDTDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAQSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             L+EN ++  +V++P+++F  T     +  +     +  + KV LI+A+ L   I++  
Sbjct: 379 EHLVENKMLAGVVSMPSNIFATTGTNVSILFID----KANKDKVVLIDASGLGEKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I + +  ++
Sbjct: 435 NQKTVLSREEEQKICNTFTHKQ 456


>gi|313668371|ref|YP_004048655.1| Type I restriction-modification system DNA methylase [Neisseria
           lactamica ST-640]
 gi|313005833|emb|CBN87288.1| putative Type I restriction-modification system DNA methylase
           [Neisseria lactamica 020-06]
          Length = 533

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 153/322 (47%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLEGE-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI            LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKAKDTDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAQSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   K    +  V LI+A+ L   I++  
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKA--NKDNVVLIDASGLGKKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I + +  ++
Sbjct: 435 NQKTVLSREEEQKICNTFTHKQ 456


>gi|260221109|emb|CBA29345.1| Type I restriction enzyme StySJI M protein [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 484

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 142/360 (39%), Gaps = 59/360 (16%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++ K+  GI+    +     + ++YE L+ +  SE   GA  + TPR         L+
Sbjct: 107 LEQLVKSLDGIDWF--SARQDGLGDLYEGLLEKNASETKSGAGQYFTPRP--------LI 156

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----------SHHKIPPILV 241
           D    L +  PG   T+ DP  GT GFL  A  ++ D             S  +    L 
Sbjct: 157 DAIVQLMQPQPG--ETVQDPAAGTAGFLIAADRYIKDHTDDLYNLTEKQRSFQRNQAFL- 213

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL   T  + +   L+  +E D        +  G+TL +      + H  LSNPPF
Sbjct: 214 --GMELVGSTRRLALMNCLLHGMEGDD----EGVVHVGNTLGQAGAALPKCHLSLSNPPF 267

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKI----SDGSMLFLMHLANKLELPPNGGGRAA 357
           G                   G  GP    +    S+  + FL H+   L      GGRAA
Sbjct: 268 GTA----------------KGGGGPTRDDLTFATSNKQLAFLQHIVRHLR----DGGRAA 307

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF    G   +++RR L++   +  I+ LPT +F+   + T + +   + ++ 
Sbjct: 308 VVLPDNVLFEAGVG---ADVRRDLMDKCRLHTILRLPTGIFYAQGVKTNV-LFFEKVSQA 363

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
             G    +   D+  +    G KR  + D      +  Y +  NGK  R        +RR
Sbjct: 364 ATGSTSAVWVYDMRANAPKFG-KRTPLTDAHFADFITAYGTDPNGKAERQDQGEQGRFRR 422


>gi|325973139|ref|YP_004250203.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
 gi|323651741|gb|ADX97823.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
          Length = 614

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 48/297 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE+ +  F  E       F TP+ +V++   +L           P   + L DP C
Sbjct: 162 LGEVYEYFLGHFSLEEKGDEGVFFTPKSLVNMIVNIL----------QPKGGKAL-DPFC 210

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GG     +    +  +        V  G EL P    +C   + +  ++      ++ 
Sbjct: 211 GSGGMFV-GIKKYMERETDSTCNQDFVFRGYELLPANVNICNMNLFMHNIQ------INS 263

Query: 275 NIQQGSTLSKDLFTGK-RFHYCLSNPPF---GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            I+Q +T   DL   + +  Y LSNPPF   G   E+ K A          GR    LP+
Sbjct: 264 VIKQCNTFENDLLDLEGKCDYVLSNPPFCVKGVNIERAKRA----------GRIPFALPR 313

Query: 331 -----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 ++   L + +  + L    N  G+A  V+  + L    A +G+ EIR+ ++E  
Sbjct: 314 GNNESFTNADYLCIQYFYSYL----NDRGKAGFVMGQNSL----ASTGDKEIRKQIIETK 365

Query: 386 LIEAIVALPTDLFFRTNIA--TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            ++ I+ +  D FF++       LW  + +K EE+R K+  I+A++ ++ +++  K+
Sbjct: 366 HVDIIIGV-ADKFFQSGFTGEVCLWFFNKQKIEEQRDKILFIDASNYFSQVKDNPKQ 421


>gi|148927925|ref|ZP_01811332.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147886728|gb|EDK72291.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 339

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 33/238 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ +F S+   GA  + TPR ++   T  L           P   +T+ D  
Sbjct: 125 VKGEIYEGLLEKFASDTKTGAGQYFTPRPLIQAMTECL----------RPEPSKTMADFA 174

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269
            GTGGF     +++A+    +K     + +    G E+ P T  +C+  + +  +     
Sbjct: 175 AGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTFTGNEIVPATARLCLMNLFLHNIGD--- 231

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE---KDKDAVE-KEHKNGELGRFG 325
            D    I    +L+ D  +GKRF Y L NPPFGKK      ++D  + KE    E   F 
Sbjct: 232 MDSKPPIHLTDSLASD--SGKRFDYILMNPPFGKKSSITVSNEDGTQSKESLTYERQDF- 288

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 S+  + F+ H+ ++L++     G+AA+++  + LF G  G+GE+ IR+ LL+
Sbjct: 289 --WTTTSNKQLNFVQHICSQLKV----DGKAAVIVPDNVLFEG--GAGET-IRKKLLQ 337


>gi|268592727|ref|ZP_06126948.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131]
 gi|291311501|gb|EFE51954.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131]
          Length = 490

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 51/315 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+   ++    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-NSTERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   S  + G  +F TPR V       +           P +  ++ DP CGTGGF
Sbjct: 149 EQILRDLQSAGNAG--EFYTPRAVTRFMVNRI----------DPRLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           L  A +HV +        HK     +  G E +   H +C   ML+  +E      +   
Sbjct: 197 LACAFDHVKEHYVKTTEDHKTLQQQI-FGVEKKQLPHLLCTTNMLLHGIE------VPVQ 249

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+  +TL+K L    ++F   ++NPPFG     ++D +EK           P   +  + 
Sbjct: 250 IRHDNTLNKPLSAWDEQFDVIITNPPFGG---TEEDGIEKNF---------PAEMQTRET 297

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVAL 393
           + LFL  +   L    +  GRAA+VL    LF    G G +++I++ L E   +  IV L
Sbjct: 298 ADLFLQLIIEVL----SDKGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF-----FRTNI 403
           P  +F      +TNI
Sbjct: 350 PNGVFNPYTGIKTNI 364


>gi|261392483|emb|CAX50032.1| putative type I restriction-modification system M protein
           [Neisseria meningitidis 8013]
          Length = 533

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 160/333 (48%), Gaps = 51/333 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+D       G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEDV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGCLKKFDFIVSNPPFKLDFSDFRDRLESD-ENHE--RFFA 325

Query: 327 GLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI        +   LF+ H+   L+      G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPTKKEKMEIYQLFIQHILFSLK----ENGKAAIVLPTGFI---TAKSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   K    + KV LI+A+ L   I    
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKV--NKDKVVLIDASGLGEKISIND 434

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
            ++ +++ ++ ++I + + +++  + FS ++ Y
Sbjct: 435 NQKTVLSCEEEQKICNTFTNKQAVEDFSVVIGY 467


>gi|57168617|ref|ZP_00367749.1| HsdM [Campylobacter coli RM2228]
 gi|305432345|ref|ZP_07401508.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter coli JV20]
 gi|57019898|gb|EAL56578.1| HsdM [Campylobacter coli RM2228]
 gi|304444693|gb|EFM37343.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter coli JV20]
          Length = 495

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP C
Sbjct: 155 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIR-AMVEVIDPKAK---------ERIYDPAC 203

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+  +  + +K   + V            G+E  P ++A+ V  M++  
Sbjct: 204 GSCGFLVESFLHILYEDRNKNKKANLSVEELEFLQNDALFGKEKTPLSYAMGVMNMILHE 263

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++       S NI + +TL+K   D+   +++   L+NPPFG K        EKE     
Sbjct: 264 VK-------SPNIIKTNTLNKKITDITQSEKYEVILANPPFGGK--------EKE----- 303

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L    N  GR AI++    LF  +  +    +++
Sbjct: 304 --QIQNNFPVKSNATELLFLQHILKSL----NNNGRCAIIVPEGVLF--QNSNAFVSVKK 355

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LLEN  +E +++LP+ +F      +TN+
Sbjct: 356 DLLENFNLECVLSLPSGVFLPYSAVKTNV 384


>gi|114048354|ref|YP_738904.1| N-6 DNA methylase [Shewanella sp. MR-7]
 gi|113889796|gb|ABI43847.1| N-6 DNA methylase [Shewanella sp. MR-7]
          Length = 500

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 129/296 (43%), Gaps = 47/296 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + ++   D+    +  +IYE ++R   S  + G  +F T
Sbjct: 110 FSDAFNYMKNGTLLRQVINKLNEVDF-TDSSERHLFGDIYEQILRDLQSAGNAG--EFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR V       +          +P +   + DP CGTGGFL  A+ H+    S       
Sbjct: 167 PRAVTKFMVNRI----------NPQLGEKVLDPACGTGGFLACAVEHLKAQVSTAAQHQQ 216

Query: 240 LVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCL 296
           L    HG E +   H +C   ML+  +E      +   I+ G+TLS+ L +        +
Sbjct: 217 LQQQIHGVEKKQLPHLLCTTNMLLHGIE------VPVQIKHGNTLSQPLSSWDNDVDVII 270

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNG-G 353
           +NPPFG     ++D +EK           P   +  + + LFL  +   L+     NG G
Sbjct: 271 TNPPFGG---TEEDGIEKNF---------PADMQTRETADLFLQLIIEVLKDGSASNGKG 318

Query: 354 GRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           GRAA+VL    LF    G G +++I++ L E   +  IV LP  +F      +TNI
Sbjct: 319 GRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRLPNGVFAPYTGIKTNI 370


>gi|291167082|gb|EFE29128.1| type I restriction-modification system, M subunit [Filifactor
           alocis ATCC 35896]
          Length = 503

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 153/368 (41%), Gaps = 63/368 (17%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           KVA YS +NT    L +L     +   E  I  F ++ +   +   + +    +E+   L
Sbjct: 81  KVAEYS-WNT----LVSLSGIELKKYYERIIHLFGEHCRGHIKSI-YHNARTNIEEPKNL 134

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            KI +  + ++ +  ++ +    ++YE L+ +  +E   GA  + TPR ++ + T L+  
Sbjct: 135 EKIIRTMNNLDWY--SIDEEGFGDLYEGLLEKNANEKKSGAGQYFTPRVLIDVMTRLI-- 190

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---------- 243
                    P +     DP CGT GF+  A  +V +   HH    +              
Sbjct: 191 --------QPKVGERCNDPACGTFGFMIAAKRYVNE---HHDEFSLSKEEYDFQKEKAFT 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G EL  +TH + +   +I  +ES+        I    TLS    +   +   L+NPPFG 
Sbjct: 240 GCELVSDTHRLALMNAMIHGIESE--------ILCADTLSNIGKSMSGYDVVLTNPPFGT 291

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K            K GE           S+  + FL H+   L++  +G  RAA+VL  +
Sbjct: 292 K------------KGGERATRDDFTFPTSNKQLNFLQHIYRSLKV--DGKARAAVVLPDN 337

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF   A    ++IR  L++   +  I+ LPT +F+   + T +   +       RG  +
Sbjct: 338 VLF---ADGDGAKIREDLMDKCNLNMILRLPTGIFYAQGVKTNVLFFT-------RGTRE 387

Query: 424 LINATDLW 431
             N  ++W
Sbjct: 388 KENTKEVW 395


>gi|189423705|ref|YP_001950882.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189419964|gb|ACD94362.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 545

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 163/333 (48%), Gaps = 56/333 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPTCG 215
           ++E+LI+ +  +      ++ TP  V  +  A+L+ P+     E  G ++ +  YDP+ G
Sbjct: 185 LFEYLIKDYNKDSGGKYAEYYTPHAVAKIMAAILV-PE-----EQRGTVKNVSCYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRRDLSK 274
           +G  L   MN     G             Q++ +  +  + +  +L   + S P      
Sbjct: 239 SGTLL---MNLAHAIGEQR-----CAIFSQDISQKSSSLLRLNLILNNLVHSIP------ 284

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEK-EHKNGELGRFGPGLP 329
           NI QG+TL+          K+F Y +SNPPF   +   ++ ++  EH+     RF  G+P
Sbjct: 285 NIIQGNTLTHPYHRNGKALKKFDYIVSNPPFKMDFSDFRNELDATEHQE----RFFAGVP 340

Query: 330 KISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
            I   ++       LFL H+   L+     GGRAA+V+ +  +    A SG + +IR  L
Sbjct: 341 NIPKQAVEKMAIYQLFLQHIIYSLK----PGGRAAVVVPTGFI---TAQSGIDRKIREKL 393

Query: 382 LENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           ++  ++  +V++P+++F    TN++      SN      + KV LI+A+ L T +++   
Sbjct: 394 VDERMLAGVVSMPSNIFATTGTNVSILFIDASN------KDKVVLIDASSLGTKVKDGKN 447

Query: 440 KRRIINDDQRRQILDIYVSRENGK-FSRMLDYR 471
           ++ ++++++  +I+  + SR+  + FS +++Y+
Sbjct: 448 QKTLLSEEEEDRIIATFNSRQAVEDFSVVVEYQ 480


>gi|238918025|ref|YP_002931539.1| type I restriction-modification system, M subunit [Edwardsiella
           ictaluri 93-146]
 gi|238867593|gb|ACR67304.1| type I restriction-modification system, M subunit [Edwardsiella
           ictaluri 93-146]
          Length = 495

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 126/296 (42%), Gaps = 53/296 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+   D+    +  +IYE ++R   S  + G  +F T
Sbjct: 111 FSDAFNYMKNGTLLKQVINKLNEIDF-TDSSERHLFGDIYEQILRDLQSAGNAG--EFYT 167

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHH 234
           PR V       +           P +   + DP CGTGGFL  A +HV +        H 
Sbjct: 168 PRAVTRFMVNRI----------DPKLGERVMDPACGTGGFLACAFDHVKEHYVETAADHQ 217

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFH 293
            +   ++  G E +   H +C   ML+  +E      +   I+ G+TL K L +      
Sbjct: 218 TLQQQIL--GVEKKQLPHLLCTTNMLLHGIE------VPVQIRHGNTLDKPLSSWDSDID 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     ++D +E+           P   +  + + LFL  +   L+     G
Sbjct: 270 VILTNPPFGG---TEEDGIEQNF---------PADLRTRETADLFLQLIIEALK----KG 313

Query: 354 GRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           GRAA+VL    LF    G G +++I++ L     +  IV LP  +F      +TNI
Sbjct: 314 GRAAVVLPDGTLF----GEGVKTKIKQLLTSECNLHTIVRLPNGVFAPYTGIKTNI 365


>gi|167571302|ref|ZP_02364176.1| N-6 DNA methylase [Burkholderia oklahomensis C6786]
          Length = 528

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 49/324 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ + +F +   +    F TP  VV +   +L          +P   R +YDP 
Sbjct: 161 LLGEVYEYFLGQFATAEGKKGGQFYTPASVVKVLVEVL----------APHQGR-VYDPC 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   +   G   K   I + +GQE  P T  +    + IR   +D    L 
Sbjct: 210 CGSGGMFVQSEKFIEAHGG--KADDISI-YGQEANPTTWRLVAMNLAIRGFAAD----LG 262

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K  +   T  +D     R  Y L+NPPF    W  ++   ++        R+  G P  +
Sbjct: 263 K--EPADTFHRDQHPDLRADYVLANPPFNISDWGGERLTEDR--------RWSYGSPPAA 312

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L H+ + L   P G  +A +VL++  +   +  + E +IRR +++ D+++ +VA
Sbjct: 313 NANYAWLQHIVHHLS--PRG--QAGVVLANGSMSTNQ--NSEGDIRRAMVDADVVDVMVA 366

Query: 393 LPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINATDLWTSIRNEGKKRR 442
           LP  LFF T I   LW L+  K+           +RR ++  I+A  L    R E +  R
Sbjct: 367 LPPQLFFNTTIPACLWFLAKDKSGGAVPGGKRGRDRRNEMLFIDARKLG---RMETRVVR 423

Query: 443 IIND-DQRRQILDIYVSRENGKFS 465
           + +D D  R    ++  R +G+ S
Sbjct: 424 VFDDEDIARIAATVHRWRADGEDS 447


>gi|254430934|ref|ZP_05044637.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001]
 gi|197625387|gb|EDY37946.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001]
          Length = 487

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 127/297 (42%), Gaps = 49/297 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++   E   GA  + TPR ++    A++           P +   + DP  
Sbjct: 128 LGDLYEGLLQKNAEEKKSGAGQYFTPRPLIDAMVAVM----------QPQLGDVIQDPAA 177

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETHAVCVAGMLIRRL 264
           GTGGFL  A   + +   H  I  +             +G E   +TH + +  +++  L
Sbjct: 178 GTGGFLIAAQRWIRE---HQDISELDEAQQQRFYQRTFYGMEHVQDTHRLALMNLMLHGL 234

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL-GR 323
           +S         I+ G T+S D     +    L+NPPFG K            K G L GR
Sbjct: 235 DSVSGEG---GIRYGDTMSSDGEGLPKASLILTNPPFGTK------------KGGGLPGR 279

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                P  S+    FL H+   L +P   GGRAA+VL  + LF G  G    +IR  L++
Sbjct: 280 NDFTFP-TSNKQFCFLQHIYRAL-VP---GGRAAVVLPDNVLFEGNVG---KQIRADLMD 331

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
              +  I+ LPT +F+   + T +   S  +    +G  + +   DL  ++   GK+
Sbjct: 332 KCNLHTILRLPTGIFYAQGVKTNVLFFS--RGTSAKGNTKAVWVYDLRANMPAFGKR 386


>gi|261401230|ref|ZP_05987355.1| type I restriction enzyme M protein [Neisseria lactamica ATCC
           23970]
 gi|269208818|gb|EEZ75273.1| type I restriction enzyme M protein [Neisseria lactamica ATCC
           23970]
          Length = 533

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 151/322 (46%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLEGE-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI            LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKAKDTDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAQSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T     +  +     +  +  V LI+A+ L   I++  
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATTGTNVSILFID----KANKDNVVLIDASGLGKKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I + +  ++
Sbjct: 435 NQKTVLSREEEQKICNTFTHKQ 456


>gi|37678450|ref|NP_933059.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37197190|dbj|BAC93030.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 530

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 37/285 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     R+    LL  +    +GI  +  +     +S +YE ++R       +  E F T
Sbjct: 144 FKGMQNRMINGYLLRDVVDKINGIHFN-SSEEMHTLSRLYETMLREMRDAAGDSGE-FYT 201

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV     ++           P +  ++ DP CGTGGFL +A  H+       +   +
Sbjct: 202 PRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREV 251

Query: 240 LVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           L      G E +   + +    +L+  LE  PR D   +++      +++    R    L
Sbjct: 252 LQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLR---FPLREMGDKDRVDVIL 307

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---G 353
           +NPPFG + EK           G LG F P   + ++ +MLFL  +  KL+ P +G   G
Sbjct: 308 TNPPFGGEEEK-----------GILGNF-PEDMQTAETAMLFLQLIMRKLKRPGHGSDNG 355

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GRAA+V+ +  LF   +    + I+  LL+N  +  IV LP  +F
Sbjct: 356 GRAAVVVPNGTLF---SDGISARIKEELLKNFNLHTIVRLPEGVF 397


>gi|284037968|ref|YP_003387898.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma
           linguale DSM 74]
 gi|283817261|gb|ADB39099.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma
           linguale DSM 74]
          Length = 502

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 51/297 (17%)

Query: 129 KAGL-LYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           K+G+ + KIC   + I+ +  +  DR +  ++YE +++   S    G  +F TPR V   
Sbjct: 119 KSGINIRKICNKLNEIDFN--SSEDRHLFGDLYEGILKELQSAGDSG--EFYTPRAVTQF 174

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPH 243
            T ++          +P +   ++DP CGTGGFL +A+ H+          ++       
Sbjct: 175 MTEMV----------NPRLGEIIFDPACGTGGFLVNAIEHIRQREVNSVDDRLTLQKTIR 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPP 300
           G E +P  + + +  +++  +E         NI+ G +L ++  + +   R    L+NPP
Sbjct: 225 GCEYKPLPYELALTNLILHDIE-------VPNIEYGDSLGREYSSIRDRDRVDVILANPP 277

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG               NG  G F P   +  + + LFL+ + N L       GRAA+VL
Sbjct: 278 FGGT-----------VANGNEGNF-PANFRTRESADLFLVLIVNLLRT----NGRAALVL 321

Query: 361 SSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
               L     G G +  +R+ LLE+  +  IV LP  +F     +AT L     ++T
Sbjct: 322 PDGSL----TGEGVKQRVRQKLLEDCDLHTIVRLPNSVFQPYATVATNLLFFEKKRT 374


>gi|257451600|ref|ZP_05616899.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_5R]
 gi|317058168|ref|ZP_07922653.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_5R]
 gi|313683844|gb|EFS20679.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_5R]
          Length = 328

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 37/207 (17%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG G  L+   + V   G    I P+ + + +E  P  H                
Sbjct: 39  VYDPTCGHGSLLSVFGDEVKKYG--QDINPVAIEYIKENFPHFH---------------- 80

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                  ++ G T+ +D F+ K+F   L+NPPF  K+E +++ +  + +  + G   P  
Sbjct: 81  -------VELGDTIQEDKFSEKKFKVILANPPFSVKYEPNEEML-LDKRFKDCGILSPA- 131

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S    +F +H+ +KL+   NG    A+V++   +   +   GE  IR+WL+EN+ I+
Sbjct: 132 ---SKADYMFNLHILHKLK--ENG---IAVVMNFPGILYRKNKEGE--IRKWLIENNYID 181

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKT 415
            IV +    F  TNIAT L I    K 
Sbjct: 182 TIVHIAGKKFEDTNIATCLIIYRKNKV 208


>gi|293603337|ref|ZP_06685765.1| type I restriction-modification system DNA-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818247|gb|EFF77300.1| type I restriction-modification system DNA-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 535

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 162/380 (42%), Gaps = 62/380 (16%)

Query: 102 SYIA--SFSDNAKAIFEDFDFSSTI---------ARLEKAGLLYKICKNFSGIELHPDTV 150
           SYI   SF+   + +F + + +S           ARL K  ++ +I    S      DT+
Sbjct: 125 SYIETESFASTFRGLFSEINLASDKLGKTYTERNARLCK--IIMEIADGLSQFSTDSDTL 182

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTL 209
            D      YE+LI +F +   + A +F TP+ +  + +A++ LD  +    +   +   L
Sbjct: 183 GD-----AYEYLIGQFAAGSGKKAGEFYTPQPISTILSAIVTLDGQEPATGQRSHLDNVL 237

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D  CG+G  L +  + +      H I  I   HGQE    T+ +    ML+  +     
Sbjct: 238 -DFACGSGSLLLNVRHRMGP----HGIGKI---HGQEKNITTYNLSRMNMLLHGV----- 284

Query: 270 RDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +D   +I  G TL  +    +        +F   ++NPPF  +W+      E        
Sbjct: 285 KDSEFDIFHGDTLLNEWDALRETNPAKMPKFDAVVANPPFSYRWDSSASLAEDM------ 338

Query: 322 GRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  
Sbjct: 339 -RFKNYGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTK 390

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL +  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +     +GK+
Sbjct: 391 LLRDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF----EKGKR 443

Query: 441 RRIINDDQRRQILDIYVSRE 460
           +  +  +   +I+D Y  R+
Sbjct: 444 QNQLLPEHIDKIIDTYQFRK 463


>gi|254518116|ref|ZP_05130172.1| type I restriction-modification system DNA methylase [Clostridium
           sp. 7_2_43FAA]
 gi|226911865|gb|EEH97066.1| type I restriction-modification system DNA methylase [Clostridium
           sp. 7_2_43FAA]
          Length = 705

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 139/324 (42%), Gaps = 53/324 (16%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  + + F+  EL   T    V   IYE+ + +F    ++   +F TP  +V +   ++
Sbjct: 131 LLADLIRIFNSDELQRAT--GDVFGRIYEYFLNKFAMSGAQEGGEFFTPISLVQMIVNVI 188

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                    E  G I  ++DP CG+ G      + V   G++      +  +GQE     
Sbjct: 189 ---------EPEGGI--VFDPACGSAGMAVQTGHFVESHGNNANDK--ITFYGQEKADLN 235

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDK 309
             +    + +          L+  + QG+T  +D     GK   + ++NPPF      + 
Sbjct: 236 TKLAKMNLAVH--------GLNGKVIQGNTFYEDKHELLGK-CDFVMANPPF------NV 280

Query: 310 DAVEKEHKNGELGRFGPGLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           D V+ E    +  R   GLP IS       +G+ L++ +    L    N  GRA  V++S
Sbjct: 281 DGVDSEKIKAD-PRLKYGLPGISSKGKSVSNGNYLWIQYFNTYL----NKTGRAGFVMAS 335

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           S      AG  E +IR  L+ +  ++ I+++  + F+  ++   LW     K E+ + KV
Sbjct: 336 SAT---DAGGKEKDIRESLVRSGDVDVIISIGNNFFYTRSLPCTLWFFDKNKLEKNKDKV 392

Query: 423 QLINATDLWTSIRNEGKKRRIIND 446
            +I+A +++  +       R IND
Sbjct: 393 LMIDARNIFRKV------NRTIND 410


>gi|332995832|gb|AEF05887.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas sp. SN2]
          Length = 512

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 37/285 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     R+    LL  +    +GI  +  +     +S +YE ++R       +  E F T
Sbjct: 129 FKGMQNRMINGYLLRDVVDKINGIHFN-SSEEMHTLSRLYETMLREMRDAAGDSGE-FYT 186

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV     ++           P +  ++ DP CGTGGFL +A  H+       +   +
Sbjct: 187 PRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREV 236

Query: 240 LVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           L      G E +   + +    +L+  LE  PR D   +++      +++    R    L
Sbjct: 237 LQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLR---FPLREMGDKDRVDVIL 292

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---G 353
           +NPPFG + EK           G LG F P   + ++ +MLFL  +  KL+ P +G   G
Sbjct: 293 TNPPFGGEEEK-----------GILGNF-PEDMQTAETAMLFLQLIMRKLKRPGHGSDNG 340

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GRAA+V+ +  LF   +    + I+  LL+N  +  IV LP  +F
Sbjct: 341 GRAAVVVPNGTLF---SDGISARIKEELLKNFNLHTIVRLPEGVF 382


>gi|257452212|ref|ZP_05617511.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
 gi|317058755|ref|ZP_07923240.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
 gi|313684431|gb|EFS21266.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
          Length = 475

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 137/320 (42%), Gaps = 48/320 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + +   R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + T
Sbjct: 90  YRNAQTRIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFT 147

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR        +L+D    + K  P +  T+YDP  GT GF+ +A  ++ +  S       
Sbjct: 148 PR--------VLIDAIVRMIK--PELGETIYDPAAGTLGFIIEADKYLRNI-SQDYYGTA 196

Query: 240 LVPHGQELEPETHAVCVAGMLIR---RLESDPR--RDLSKNIQQGSTLSKDLFTGKRFHY 294
             P  +EL  +   V  A  L++   RL S       +  N  QG TLS+    GK+F +
Sbjct: 197 ENPISEELSQKYKKVFSACELVQDTHRLGSMNALLHGIGGNFLQGDTLSE---FGKQFSH 253

Query: 295 ---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               LSNPPFG K            K GE       +   S+  + FL  +   L +   
Sbjct: 254 FDIILSNPPFGTK------------KGGERATRDDLVYATSNKQLNFLEVIYRSLNV--T 299

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+V+  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +
Sbjct: 300 GKARAAVVVPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFT 356

Query: 412 NRKTEERRGKVQLINATDLW 431
                  RG     N  ++W
Sbjct: 357 -------RGISDTNNTKEIW 369


>gi|304373126|ref|YP_003856335.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis HUB-1]
 gi|304309317|gb|ADM21797.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis HUB-1]
          Length = 931

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 146/330 (44%), Gaps = 47/330 (14%)

Query: 154 VMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           V+  +YE LI +F S  +  +G E F TP +V  L + ++ +      K     I+ +YD
Sbjct: 212 VLGYVYEFLIAKFASSNTGKKGGE-FYTPHEVSLLMSEIVANH----LKNKNYEIK-VYD 265

Query: 212 PTCGTGGFLT---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            T G+G  L    D    + +   +      +  + QEL   T  +    ++I  + +  
Sbjct: 266 STSGSGSLLRSIGDMYKKITNNDDNS-----VKYYAQELNSSTCKLTKMNLIINGIATK- 319

Query: 269 RRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               S  +Q   TL  D          +    +SNPP+   W  +      EHKN    R
Sbjct: 320 ----SICVQNADTLKDDWPMKNDEETLKVDAVVSNPPYSMSWNAE------EHKND--IR 367

Query: 324 FGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   G+   S     FL+H    +E     GG  AIVL    LF  R GS E +IR  L+
Sbjct: 368 FEEYGIAPRSKADFAFLLHDLYHVE----DGGILAIVLPHGVLF--REGS-EKQIREKLV 420

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKK 440
               I+AI+ LP  +F+ T I+T + IL   K  E  +   +  ++A++L+   + EGK 
Sbjct: 421 RKANIKAIIGLPDKMFYGTEISTIIMILKKDKYYEKTKENNILFVDASNLY---KQEGKM 477

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           ++ +    ++ +  +   RE   FS+++++
Sbjct: 478 KKFLASHIKKIVDTVINKREILGFSKIVNF 507


>gi|93007189|ref|YP_581626.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92394867|gb|ABE76142.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 526

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 123/287 (42%), Gaps = 35/287 (12%)

Query: 154 VMSNIYEHLIRRF---GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           +   IYE  + +F   G+   EG E F TP  +V+L    +  PD  +          ++
Sbjct: 154 IFGRIYEFFLMKFSMQGAGAQEGGE-FFTPPSLVNLIVNFI-QPDHGI----------IH 201

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+GG      + +     +  +   +  +G EL+     +    + +  +E     
Sbjct: 202 DPACGSGGMFVQTAHFIQGHMPNKSVNEAITVYGTELKSNNTKLAKMNLAVHGIEGAI-- 259

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I+  S  +       +  + ++NPPF       K+    E  +  L  FG  L K
Sbjct: 260 -----IESNSFYTNPHDLNGKCDFVMANPPFNVSGIDGKNKFLTE--DARL-PFGAPLTK 311

Query: 331 ---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              I +G+ L++ +  + L    N  GRA  V++SS      AG  E  IR+ L+E   +
Sbjct: 312 GGTIGNGNYLWIQYFHSYL----NKTGRAGFVMASSAT---DAGHAEKLIRQQLIETGDV 364

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           E IV++  + F+  ++  ++W  +  K  E + K+ +I+A + +  +
Sbjct: 365 ECIVSIANNFFYTRSLPCHVWFFNKEKKAENKDKILMIDARNTYRKV 411


>gi|319950292|ref|ZP_08024212.1| N-6 DNA methylase [Dietzia cinnamea P4]
 gi|319436048|gb|EFV91248.1| N-6 DNA methylase [Dietzia cinnamea P4]
          Length = 504

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 115/260 (44%), Gaps = 36/260 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE L+ +   +   GA  + TPR ++     ++           P +  T+ DP 
Sbjct: 127 IQGDAYESLLAKGAQDKGSGAGQYFTPRPLIQAIVDVI----------QPTIEDTVVDPA 176

Query: 214 CGTGGFLTDAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           CGTGGFL  A  H A   S       HK+       G EL   T  +    +L+  + + 
Sbjct: 177 CGTGGFLLVAHEHAAGTASSMTPTQRHKLQEKFAT-GFELVDGTARLAAMNVLLHGMGTA 235

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE----KEHKNGELGR 323
               L   I+    L  D   G R+   L+NPPFG+K      A +    +E +  E   
Sbjct: 236 NGESL---IEVRDALVAD--PGHRWSVVLTNPPFGRKSSVTMVAADGSQTREDREIERQD 290

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F   +   S+  + F+ H+   L+      GRAA+VL  + LF G  G+GE+ IRR LL+
Sbjct: 291 F---VATTSNKQLNFVQHIMTILDT----NGRAAVVLPDNVLFEG--GAGET-IRRKLLD 340

Query: 384 NDLIEAIVALPTDLFFRTNI 403
           +  +  ++ LPT +F+   +
Sbjct: 341 DFDLHTMLRLPTGIFYAQGV 360


>gi|256617125|ref|ZP_05473971.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
 gi|256596652|gb|EEU15828.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
          Length = 304

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 33/250 (13%)

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T+ +    +++  ++++      
Sbjct: 1   MGSGSLMLNVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----E 48

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK 
Sbjct: 49  MNLRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK- 103

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 104 SKADFAFLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVI 156

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + +L  +K  + R  V  I+A+  +   +N+ K    ++++  ++
Sbjct: 157 GMPANLFFGTSIPTTVIVL--KKNRQNR-DVLFIDASREFVKGKNQNK----LSEENIQK 209

Query: 452 ILDIYVSREN 461
           IL+ Y  R++
Sbjct: 210 ILENYAERKD 219


>gi|229548133|ref|ZP_04436858.1| possible adenine specific DNA-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|256958291|ref|ZP_05562462.1| type I restriction enzyme M protein [Enterococcus faecalis DS5]
 gi|257091258|ref|ZP_05585619.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|307274413|ref|ZP_07555597.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2134]
 gi|312905317|ref|ZP_07764432.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|229306739|gb|EEN72735.1| possible adenine specific DNA-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|256948787|gb|EEU65419.1| type I restriction enzyme M protein [Enterococcus faecalis DS5]
 gi|257000070|gb|EEU86590.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|295114355|emb|CBL32992.1| type I restriction system adenine methylase (hsdM) [Enterococcus
           sp. 7L76]
 gi|306508923|gb|EFM78009.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2134]
 gi|310631341|gb|EFQ14624.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|315036579|gb|EFT48511.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0027]
 gi|315145850|gb|EFT89866.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2141]
 gi|315162496|gb|EFU06513.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0645]
 gi|315578596|gb|EFU90787.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0630]
          Length = 530

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D  +S+IYE+L+ +F + ++     + TP+++ ++   +L    +   +ES     ++YD
Sbjct: 165 DDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTSGREE--EES----FSIYD 218

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L    +++ +  SH +   ++   GQE +   + +    +++  +E +   D
Sbjct: 219 PTVGSGSLLLTTASYMKN--SHKR--GMIKYFGQEKDATPYRLSRMNLMMHGVEYN---D 271

Query: 272 LSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGE 320
           +S  I    TL  D   G        + F   ++NPP+   W   +++ D   +E+    
Sbjct: 272 IS--INHADTLESDWPDGVVDGKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREY---- 325

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 G+   +     FL+H    LE      GR AI+L    LF G A   E  IR+ 
Sbjct: 326 ------GIAPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRGAA---EGRIRKA 372

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           L++   IE ++  P  LF  T+I   + IL   +T
Sbjct: 373 LIDKHQIETVIGFPDKLFLNTSIPVCVLILRKNRT 407


>gi|194443867|ref|YP_002043769.1| type I restriction-modification system M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194402530|gb|ACF62752.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 489

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 46/285 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+         +  +IYE ++R    + +  A +F T
Sbjct: 110 FSDAYNYMKNGTLLRQVINKLNEIDF-TRASERHLFGDIYEQILRDL--QAAGNAGEFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HK 235
           PR V                +  P +  ++ DP CGTGGFL  A +HV +  +H    H+
Sbjct: 167 PRAVTRFMVE----------RVDPKLGESIMDPACGTGGFLACAFDHVKNHYAHTVTDHQ 216

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHY 294
           I    + HG E +   H +C   ML+  +E      +   I+  +TL+K L +  ++   
Sbjct: 217 ILQKQI-HGVEKKQLPHLLCTTNMLLHGIE------VPVQIRHDNTLNKPLSSWDEQMDV 269

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFG     ++D +EK           P   +  + + LFL  +   L       G
Sbjct: 270 IITNPPFGG---TEEDGIEKNF---------PSDMQTRETADLFLQLIIEVLA----KNG 313

Query: 355 RAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           RAA+VL    LF    G G +++I++ L E   +  IV LP  +F
Sbjct: 314 RAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRLPNGVF 354


>gi|313610497|gb|EFR85650.1| type I restriction-modification system, M subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 529

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 142/326 (43%), Gaps = 51/326 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S+IYE+L+ +F + ++     + TP+++ ++   +L    + + K S      ++DPT
Sbjct: 167 TVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFS------IFDPT 220

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    +++ + G       ++  +GQE +   + +    +++  +E +      
Sbjct: 221 VGSGSLLLTTASYMKNSGRR----GVIKYYGQEKDATPYRLSRMNLMMHGIEYN-----D 271

Query: 274 KNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELG 322
            NI    TL  D   G        + F   ++NPP+   W   +++ D   +E+      
Sbjct: 272 ININHADTLESDWPDGVVDGKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREY------ 325

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   +     FL+H    LE      GR AI+L    LF    G+ E  IR+ L+
Sbjct: 326 ----GVSPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFR---GASEGRIRKALI 374

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +   IE I+  P  LF    I   + IL   + E     V  I+A+  +     + KK+ 
Sbjct: 375 DKHQIETIIGFPEKLFLNAAIPVCVVILRKNRIE---SDVLFIDASKEF----EKTKKQN 427

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRM 467
            +  +   +I+D  ++R E  K+S +
Sbjct: 428 SLRSEDVDKIVDTVINRKEIDKYSHI 453


>gi|257088129|ref|ZP_05582490.1| type I restriction enzyme M protein [Enterococcus faecalis D6]
 gi|256996159|gb|EEU83461.1| type I restriction enzyme M protein [Enterococcus faecalis D6]
 gi|315026886|gb|EFT38818.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2137]
          Length = 530

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D  +S+IYE+L+ +F + ++     + TP+++ ++   +L    +   +ES     ++YD
Sbjct: 165 DDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTSGREE--EES----FSIYD 218

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L    +++ +  SH +   ++   GQE +   + +    +++  +E +   D
Sbjct: 219 PTVGSGSLLLTTASYMKN--SHKR--GMIKYFGQEKDATPYRLSRMNLMMHGVEYN---D 271

Query: 272 LSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGE 320
           +S  I    TL  D   G        + F   ++NPP+   W   +++ D   +E+    
Sbjct: 272 IS--INHADTLESDWPDGVVDGKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREY---- 325

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 G+   +     FL+H    LE      GR AI+L    LF G A   E  IR+ 
Sbjct: 326 ------GIAPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRGAA---EGRIRKA 372

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           L++   IE ++  P  LF  T+I   + IL   +T
Sbjct: 373 LIDKHQIETVIGFPDKLFLNTSIPVCVLILRKNRT 407


>gi|312110992|ref|YP_003989308.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y4.1MC1]
 gi|311216093|gb|ADP74697.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y4.1MC1]
          Length = 515

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 55/312 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   YE+ I  F +       +F TP  +V L  A+L +P   +          ++DP 
Sbjct: 166 ILGRTYEYFISSFAASEGNRGGEFFTPSSIVKLLVAML-EPKSGI----------VFDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +  +  +  +       L  +GQE    T  +    +L+  + ++      
Sbjct: 215 CGSGGMFIQSEEYAPNKHA-------LSFYGQENVVTTVRLGKMNVLLHGINAE------ 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP---GLP 329
             I+ G +L  D F   +  Y ++NPPF +K W  D+           L +  P   G  
Sbjct: 262 --IRLGDSLLNDQFPDLKADYVIANPPFNQKDWGADR-----------LSKNDPRLIGPV 308

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+ + +++ H    L    N  G A  V+++  +        E E+R+ L++   I+ 
Sbjct: 309 TNSNANYMWMQHFLYHL----NDTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDC 362

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRII 444
           IV LP  LFF T I   L+ LS  +        R+ ++  I+A  + T +    +K++ +
Sbjct: 363 IVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKAL 419

Query: 445 NDDQRRQILDIY 456
           + ++  QI  +Y
Sbjct: 420 SKEEIDQIAAVY 431


>gi|300861380|ref|ZP_07107466.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849172|gb|EFK76923.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TUSoD Ef11]
          Length = 530

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D  +S+IYE+L+ +F + ++     + TP+++ ++   +L    +   +ES     ++YD
Sbjct: 165 DDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTSGREE--EES----FSIYD 218

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L    +++ +  SH +   ++   GQE +   + +    +++  +E +   D
Sbjct: 219 PTVGSGSLLLTTASYMKN--SHKR--GMIKYFGQEKDATPYRLSRMNLMMHGVEYN---D 271

Query: 272 LSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGE 320
           +S  I    TL  D   G        + F   ++NPP+   W   +++ D   +E+    
Sbjct: 272 IS--INHADTLESDWPDGVVDGKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREY---- 325

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 G+   +     FL+H    LE      GR AI+L    LF G A   E  IR+ 
Sbjct: 326 ------GIAPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRGAA---EGRIRKA 372

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           L++   IE ++  P  LF  T+I   + IL   +T
Sbjct: 373 LIDKHQIETVIGFPDKLFLNTSIPVCVLILRKNRT 407


>gi|11387194|sp|Q47282|T1ME_ECOLX RecName: Full=Type I restriction enzyme EcoEI M protein;
           Short=M.EcoEI
 gi|304897|gb|AAD15049.1| EcoE type I restriction modification enzyme M subunit [Escherichia
           coli]
          Length = 490

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 133/315 (42%), Gaps = 51/315 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   S  + G  +F TPR V       +           P +  ++ DP CGTGGF
Sbjct: 149 EQILRDLQSAGNAG--EFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           L  A +HV D        HK     + +G E +   H +C   ML+  +E      +   
Sbjct: 197 LACAFDHVKDNYVKTTEDHKTLQQQI-YGVEKKQLPHLLCTTNMLLHGIE------VPVQ 249

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  + 
Sbjct: 250 IRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRET 297

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVAL 393
           + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV L
Sbjct: 298 ADLFLQLIIEVLA----DKGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF-----FRTNI 403
           P  +F      +TNI
Sbjct: 350 PNGVFNPYTGIKTNI 364


>gi|253998801|ref|YP_003050864.1| adenine-specific DNA-methyltransferase [Methylovorus sp. SIP3-4]
 gi|253985480|gb|ACT50337.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylovorus sp. SIP3-4]
          Length = 497

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 155/358 (43%), Gaps = 78/358 (21%)

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED---FD 119
           G +  +L  FV +     + T +  L  +G T  R  +           + +FED   + 
Sbjct: 73  GMTGDELSDFVNL---QLFPTLKTKLILIGPTGERAKV----------IRNVFEDAYNYM 119

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFM 178
            S T+ R     ++ KIC      E++ +   DR    +IYE +++   S  + G  +F 
Sbjct: 120 KSGTLMR----QVINKIC------EINFNNTQDRHTFGSIYEQILKDLQSAGNAG--EFY 167

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR V    T  ++D  D      P +  ++ DP CGTGGFL   ++H  +    +    
Sbjct: 168 TPRAV----TKFIVDRVD------PQLAESVLDPACGTGGFLACTIDHKREKYVKNAADE 217

Query: 239 ILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----KDLFTGKR 291
            L+    HG E +   H +C   M++  +      D    I+  + LS    KD     R
Sbjct: 218 ALLVASIHGVEKKALPHMLCTTNMILHGI------DTPTQIEHDNMLSRRAYKDYGDADR 271

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            H  ++NPPFG     ++D VE +          P   +  + + LF M L  KL L P+
Sbjct: 272 VHVIVTNPPFGG---MEEDGVENQF---------PATLRTRETADLF-MALVVKL-LKPH 317

Query: 352 GGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
             GRAA+VL    LF    G G ++ +++ LLE   +  IV LP  +F      +TNI
Sbjct: 318 --GRAAVVLPDGFLF----GEGMKTRLKQMLLEQCHLHTIVRLPNGVFNPYTGIKTNI 369


>gi|293363461|ref|ZP_06610218.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
 gi|292552981|gb|EFF41734.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
          Length = 229

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 17/191 (8%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F   +SNPP+  KWE   + +    +   +    P     S   M F+MH+ N L   
Sbjct: 6   KPFDIIVSNPPYSTKWEGKNNPLNANDERFSVTTLAPN----SKADMAFVMHMINHLS-- 59

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G AAIV     L+  R G+ E +IR +L++ +LI+ IV LP +LFF T+I T + +
Sbjct: 60  --SSGSAAIVEFPGVLY--RCGA-EKDIREYLVKENLIDTIVKLPNNLFFGTSIYTCILL 114

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           L  RK +  +G +  ++A+  +  I+N GKK ++   +  + I  I   +E   FS ++D
Sbjct: 115 L--RKNKNEQG-IFFVDASKEF--IKN-GKKNKLSKQNLEKIIEIIRYKKEIEDFSILID 168

Query: 470 YRTFGYRRIKV 480
           + T   +  K+
Sbjct: 169 HETIANKNFKL 179


>gi|294676509|ref|YP_003577124.1| type I restriction-modification system RcaSBIP subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294475329|gb|ADE84717.1| type I restriction-modification system RcaSBIP, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 489

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 136/339 (40%), Gaps = 54/339 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+     L KA  L  +      ++ +     +  + ++YE L+ R  SE    A  + T
Sbjct: 100 FTDAKTSLTKATALTSLITTIDTVDWY--AAEEDGLGDLYEGLLERTTSERKSKAGQYFT 157

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPP 238
           PR ++     L+           P +   + DP  GTGGFL  A   +  D      +P 
Sbjct: 158 PRPLIETIIHLM----------KPKVGEVIQDPAAGTGGFLIAAHRAIMRDTDDLTTVPK 207

Query: 239 ILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +          G EL   TH +    +L+  ++        + I     L+ D      
Sbjct: 208 DVAFAQRNGKYQGAELITGTHRLNTMNLLLHGID--------QPIDPIDALTSDAKKFDP 259

Query: 292 FHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               L+NPPF K  E   +D   +  E + G L                F+ H+   L++
Sbjct: 260 ADLILTNPPFNKFPESVARDDFVITAEARKGPLP---------------FVEHVIRGLKV 304

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRAAIV+  + LF    G    ++R W+++   +  I+ LPT +F+   + T + 
Sbjct: 305 ----GGRAAIVVPDNTLFEDSMGR---DLRNWMMDLCDLHTILRLPTGIFYAQGVKTNVI 357

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            L+ +K+EER G  + +   DL   + N GK R +   D
Sbjct: 358 FLT-KKSEERVGATKAVWFYDLRAQMPNFGKTRTLTTAD 395


>gi|192360754|ref|YP_001981159.1| type I restriction-modification system subunit M [Cellvibrio
           japonicus Ueda107]
 gi|190686919|gb|ACE84597.1| type I restriction-modification system, M subunit [Cellvibrio
           japonicus Ueda107]
          Length = 490

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 45/260 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  + G  ++ TPR V       +          +P +  +++DP
Sbjct: 143 HLFNDIYEKILADLQSAGNAG--EYYTPRAVTQFIVDTI----------NPQLGESIFDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A+ H+            L    HG E +P  H + +  M++  +E     
Sbjct: 191 ACGTGGFLTCAIEHLKSQAKTTADKKRLQKSIHGVEKKPLPHMLAITNMMLHGIE----- 245

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TLS   KD     R    ++NPPFG     ++D +EK        R    
Sbjct: 246 -VPTQIRHDNTLSRPYKDYGPRDRVDIIITNPPFGG---MEEDGIEKNFLAKHQTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + +D  M  +MHL     L P   GRAA+VL    LF    G G ++ ++R LLE+  
Sbjct: 298 --ETADLFMALIMHL-----LKPT--GRAAVVLPDGFLF----GEGVKTTLKRELLEDFN 344

Query: 387 IEAIVALPTDLFF-RTNIAT 405
           +  IV LP  +F   T+IAT
Sbjct: 345 LHTIVRLPKGVFAPYTSIAT 364


>gi|42779917|ref|NP_977164.1| type I restriction-modification system, M subunit [Bacillus cereus
           ATCC 10987]
 gi|42735835|gb|AAS39772.1| type I restriction-modification system, M subunit [Bacillus cereus
           ATCC 10987]
          Length = 484

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 133/316 (42%), Gaps = 47/316 (14%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L KI K+   ++ +        + ++YE L+ +  SE   GA  + TPR ++ +   L+ 
Sbjct: 111 LEKIIKSIDNLDWY--NAEKEGLGDLYEGLLEKNASETKSGAGQYFTPRVLIDVMVKLV- 167

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVPH-------G 244
                     P +     DP  GT GF+  A  ++ +    +  I P            G
Sbjct: 168 ---------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDPEQAEFQKTEAFTG 218

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL  +TH + +   L+  +E          ++ G TLS +          L+NPPFG K
Sbjct: 219 MELVKDTHRLALMNALLHGIEG--------RLEHGDTLSSNGKWLTSLDVILTNPPFGTK 270

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       K GE         + S+  + FL  + N L+   +G  RAA++L  + 
Sbjct: 271 ------------KGGERATRDDLTFETSNKQLNFLQLIYNALK--DDGNARAAVILPDNV 316

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF    G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+  R   + 
Sbjct: 317 LFESGIGA---QIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKTD--RDSTKE 371

Query: 425 INATDLWTSIRNEGKK 440
           +   DL T++ + GK+
Sbjct: 372 VWVYDLRTNMPSFGKR 387


>gi|327540217|gb|EGF26806.1| type I restriction-modification system, M subunit [Rhodopirellula
           baltica WH47]
          Length = 497

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 134/323 (41%), Gaps = 57/323 (17%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +A+     F      ++   L+ ++    + I+ + ++    V  ++YE +++   S 
Sbjct: 99  NPRAVVIRSAFDDANQYMKNGTLMRQVINKINEIDFN-NSKDRHVFGDVYEQILKDLQSA 157

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            + G  +F TPR V                + +P +   + DP CGTGGFLT  ++++ D
Sbjct: 158 GNAG--EFYTPRAVTQFMVQ----------QTAPQLGERVLDPACGTGGFLTAVIDYIRD 205

Query: 230 CGSHHKIPPILVPHGQELEPETHAV---------CVAGMLIRRLESDPRRDLSKNIQQGS 280
                K P     H +EL+   H V         C   +L+  +      D+   I+  +
Sbjct: 206 EAKQVKSP----THEEELQASIHGVEKKHLPHILCTTNLLLHGI------DVPSQIRHDN 255

Query: 281 TLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           TLS   +D     R    ++NPPFG   E   D +E         R      + +D  ++
Sbjct: 256 TLSRPLRDYGPKDRVDVIVTNPPFGGMEE---DGIELNFPKAFQTR------ETADLFLV 306

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTD 396
            +MHL  +       GGR AIVL    LF    G G ++ I+  LL+   +  IV LP  
Sbjct: 307 LIMHLLKE-------GGRGAIVLPDGTLF----GEGVKTRIKERLLDECNLHTIVRLPNG 355

Query: 397 LFF-RTNIATYLWILSNRKTEER 418
           +F   T I T L   +   T ++
Sbjct: 356 VFNPYTGIKTNLLFFTKGPTGKK 378


>gi|229082883|ref|ZP_04215307.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock4-2]
 gi|228700421|gb|EEL52983.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock4-2]
          Length = 584

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 166/383 (43%), Gaps = 64/383 (16%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKI-----CKNFSGIELHPDTVPDR--VMSNI 158
           SF    + +F + +  S     +K G  Y++     C   + I       P+   ++ + 
Sbjct: 179 SFDSTFRGLFSEVNLDS-----DKLGKNYELRNTTLCSIITAIAEGLSEFPNESDLLGDA 233

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGM---IRTLYDPTC 214
           YE+LI +F +   + A +F TP+ +  + + ++ LD  D     S G    ++ + D  C
Sbjct: 234 YEYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQDP----STGKKERLKNILDFAC 289

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +    +      + I  I   +GQE    T+ +    ML+  L     +D   
Sbjct: 290 GSGSLLINVRKQLG----ANSIGQI---YGQEKNITTYNLARMNMLLHGL-----KDSEF 337

Query: 275 NIQQGSTLSKD------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            I  G +L  D      +   K+      ++NPPF  +WE +    E         RF  
Sbjct: 338 KIFHGDSLLNDWDILTEMNPAKKLECDAVVANPPFSYRWEPNDTLAED-------FRFKS 390

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR  LL++ 
Sbjct: 391 YGLAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGA---EEKIRTKLLKDG 443

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LFF T I   + +L   K   +   V  INA++ +    + GK++ ++ 
Sbjct: 444 NIDTIIGLPANLFFSTGIPVCILVLKKCK---KFDDVLFINASEYY----DRGKRQNVLM 496

Query: 446 DDQRRQILDIYVSR--ENGKFSR 466
            +   +I++ Y  R  ++ K+SR
Sbjct: 497 PEHIDKIVETYKYRKEDDKKYSR 519


>gi|85711477|ref|ZP_01042535.1| N-6 DNA methylase [Idiomarina baltica OS145]
 gi|85694629|gb|EAQ32569.1| N-6 DNA methylase [Idiomarina baltica OS145]
          Length = 520

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 176/433 (40%), Gaps = 53/433 (12%)

Query: 12  ANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GSNID 68
           A  +W  A+ LW +   K  +F   +L    L+  +       SA  EK    G G    
Sbjct: 7   AKRLWAAADQLWANTGLKPAEFSAPVLGLIFLKYAD----KKYSAAEEKLGPVGSGGRRK 62

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFSS----T 123
           +     +A    +       S L S    +N+   I   +D  KAI  E+ D       T
Sbjct: 63  VSKDDYLAEGVIFLPETARFSHLLSLTEGDNIGKAI---NDAMKAIEDENPDLKGALPRT 119

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RLE   +L ++ K  + ++L  D         +YE+ +  F  +  +    F TP  +
Sbjct: 120 YTRLENW-VLQELLKQLAPVDLSGDA-----FGKVYEYFLGNFALKEGQKGGVFYTPESI 173

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP- 242
           V L   ++           P   R ++DP CG+GG    + + V     HHK     +  
Sbjct: 174 VKLIVEII----------EPYHGR-IFDPACGSGGMFVHSADFVE---RHHKTAMDEISI 219

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E +  T  +    + +  L  D R   +        + K+      F + ++NPPF 
Sbjct: 220 FGTEKDQTTVNLNKMNLAVHGLSGDVRVSNTYYEDPHGAVYKN--GDGFFDFVMANPPF- 276

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                +   V+KE   G+  RF  G+PK  + + L++      L+  P G  RA  V+++
Sbjct: 277 -----NVSGVDKERLEGDP-RFPFGVPKTDNANYLWIQLFYASLK--PTG--RAGFVMAN 326

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGK 421
           S    G A   E  +R+ L+E+  ++ IV++  + F+   +   LW     K+E ERR K
Sbjct: 327 SA---GDARGSEQVVRQKLIESGAVDVIVSVGPNFFYTVTLPCTLWFFDRAKSETERRDK 383

Query: 422 VQLINATDLWTSI 434
           V  I+A  ++  I
Sbjct: 384 VLFIDARHIYNQI 396


>gi|108797003|ref|YP_637200.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119866087|ref|YP_936039.1| N-6 DNA methylase [Mycobacterium sp. KMS]
 gi|108767422|gb|ABG06144.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119692176|gb|ABL89249.1| N-6 DNA methylase [Mycobacterium sp. KMS]
          Length = 495

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 41/281 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE  +  F ++  +G  ++ TP  +V L   +L           P   R ++DP CG+G
Sbjct: 172 IYEDFLSNFAAQEGKGGGEYFTPYSIVRLIVEIL----------EPFHGR-VFDPACGSG 220

Query: 218 GFLTDAMNHVA--DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           G        V   +  ++ K    L   G E   +T  +    + +  L  D        
Sbjct: 221 GMFVQCAKFVERHNESANRK----LSIFGAEKTDDTVPLAKMNLALHGLSGD-------- 268

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+Q ++  +D       F Y ++NPPF      + D V+K    G+  RF  G+PK  + 
Sbjct: 269 IRQANSYYEDPHKAVGAFDYVMANPPF------NVDKVKKGQLAGD-KRFPFGIPKPDNA 321

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           + L++      L       GRA  V+++S    G AG  E EIR+ ++E+ +++ +VA+ 
Sbjct: 322 NYLWIQQFYAAL----GPKGRAGFVMANSA---GDAGHSEKEIRKQIIESGVVDVMVAIS 374

Query: 395 TDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSI 434
           ++ F+   +   LW +   K   +R   V  ++A   +  I
Sbjct: 375 SNFFYTVTLPVTLWFMDKAKAGTQREDAVLFLDARHTYRQI 415


>gi|168262424|ref|ZP_02684397.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205348666|gb|EDZ35297.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 489

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 123/284 (43%), Gaps = 44/284 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+         +  +IYE ++R    + +  A +F T
Sbjct: 110 FSDAYNYMKNGTLLRQVINKLNEIDF-TRASERHLFGDIYEQILRDL--QAAGNAGEFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR V                +  P +  ++ DP CGTGGFL  A +HV +  +H      
Sbjct: 167 PRAVTRFMVE----------RVDPKLGESIMDPACGTGGFLACAFDHVKNHYAHTVTDHQ 216

Query: 240 LVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYC 295
           L+    HG E +   H +C   ML+  +E      +   I+  +TL+K L +  ++    
Sbjct: 217 LLQRQIHGVEKKQLPHLLCTTNMLLHGIE------VPVQIRHDNTLNKPLSSWDEQMDVI 270

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPFG     ++D +EK           P   +  + + LFL  +   L       GR
Sbjct: 271 ITNPPFGG---TEEDGIEKNF---------PSDMQTRETADLFLQLIIEVLA----KNGR 314

Query: 356 AAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           AA+VL    LF    G G +++I++ L E   +  IV LP  +F
Sbjct: 315 AAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRLPNGVF 354


>gi|50122044|ref|YP_051211.1| subunit M of type I restriction-modification system [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612570|emb|CAG76020.1| subunit M of type I restriction-modification system [Pectobacterium
           atrosepticum SCRI1043]
          Length = 490

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 133/315 (42%), Gaps = 51/315 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   S  + G  +F TPR V       +           P +  ++ DP CGTGGF
Sbjct: 149 EQILRDLQSAGNAG--EFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           L  A +HV D        HK     + +G E +   H +C   ML+  +E      +   
Sbjct: 197 LACAFDHVKDNYVITTEDHKTLQKQI-YGVEKKQLPHLLCTTNMLLHGIE------VPVQ 249

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  + 
Sbjct: 250 IRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRET 297

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVAL 393
           + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV L
Sbjct: 298 ADLFLQLIIEVLA----DKGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF-----FRTNI 403
           P  +F      +TNI
Sbjct: 350 PKGVFNPYTSIKTNI 364


>gi|161507779|ref|YP_001577743.1| Type I restriction modification system [Lactobacillus helveticus
           DPC 4571]
 gi|160348768|gb|ABX27442.1| Type I restriction modification system [Lactobacillus helveticus
           DPC 4571]
          Length = 484

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 143/335 (42%), Gaps = 48/335 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +++    +++   L KI K+ + ++    +  +  + ++YE L+ +  +EV  GA  + T
Sbjct: 92  YANASTAIDEPANLEKIIKDINDLDWW--SAREEGLGDLYEGLMEKNANEVKSGAGQYFT 149

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------CG 231
           PR ++++   +            P +     DP  GT GF+  A  ++ D          
Sbjct: 150 PRVLINMMVKMT----------KPKIGDRCNDPAAGTFGFMVAADQYLKDKTDDYSELSE 199

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             +         G EL P TH + +    +  ++          ++QG +LS +    K 
Sbjct: 200 EKYDFQVKEAFSGMELVPNTHRLAIMNEYLHGMDG--------RLEQGDSLSANGKWMKN 251

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K            K GE         + S+  + FL  + N L+   +
Sbjct: 252 FDVVLTNPPFGTK------------KGGERVTRDDLTYETSNKQLNFLQIIYNSLK--RD 297

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+V+  + LF    G GE EIR+ LL    +  I+ LPT +F+   + T +   +
Sbjct: 298 GKARAAVVVPDNVLF--ADGVGE-EIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFT 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
             + EE +   +     D+   +R+ G KR  +ND
Sbjct: 355 --RGEEDKDNTKETWIYDMRHQMRSFG-KRNPLND 386


>gi|78357541|ref|YP_388990.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219946|gb|ABB39295.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 488

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 48/262 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  + G  ++ TPR V      +L           P + +T+ DP
Sbjct: 143 HLFNDIYEKILSDLQSAGNAG--EYYTPRAVTQFMVDML----------DPQLGQTILDP 190

Query: 213 TCGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFLT A+ H    V       ++   +  HG E +P  H + +  M++  +    
Sbjct: 191 ACGTGGFLTCAIEHLNKQVKTAEDRKRLQECI--HGVEKKPLPHMLAMTNMMLHGI---- 244

Query: 269 RRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D+  N++  +TLS   KD     R    ++NPPFG     ++D +E         R  
Sbjct: 245 --DVPTNVRHDNTLSRPLKDYGPRDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
               + +D  M  +MHL        +  G+AA+VL    LF    G G ++ I+R LLE 
Sbjct: 298 ----ETADLFMALIMHLLK------HDTGKAAVVLPDGFLF----GEGVKTTIKRELLEE 343

Query: 385 DLIEAIVALPTDLFF-RTNIAT 405
             +  IV LP  +F   T+IAT
Sbjct: 344 FNLHTIVRLPKGVFSPYTSIAT 365


>gi|297209067|ref|ZP_06925467.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886338|gb|EFH25271.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 266

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 20/188 (10%)

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           +I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S  
Sbjct: 26  DIRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKA 80

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVAL 393
              F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ L
Sbjct: 81  DFAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGL 133

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQ 448
           P ++F+ T+I T   IL  +K  ++   V  I+A++ +   +N+      +  RIIN  +
Sbjct: 134 PANIFYGTSIPT--CILVFKKCRQQEDYVLFIDASNDFEKGKNQNHLTDAQVERIINTYK 191

Query: 449 RRQILDIY 456
           R++ +D Y
Sbjct: 192 RKETIDKY 199


>gi|262067420|ref|ZP_06027032.1| putative type I restriction-modification system, M subunit
           [Fusobacterium periodonticum ATCC 33693]
 gi|291378863|gb|EFE86381.1| putative type I restriction-modification system, M subunit
           [Fusobacterium periodonticum ATCC 33693]
          Length = 498

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 136/312 (43%), Gaps = 46/312 (14%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-V 154
            RN    +I +  ++  ++F  +   + I ++    +L         I  +P  V D+  
Sbjct: 92  VRNEAFEFIKNLDEDKNSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +    G   F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSGKNGQ--FRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++        A     +K     + HG + +     +    +L+  +++
Sbjct: 199 GTSGFLVSSIEYIKKNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMKT 258

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P+      +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 259 -PK------LKRIDSLSTDYSEENEYTLILANPPF-------KGSVDEALLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF       L++    GGRAA+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VAKTKKTELLFNALFLRLLKI----GGRAAVIVPDGVLFG--ASNAHRNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF 398
           +EAI+++P+ +F
Sbjct: 355 LEAIISMPSGVF 366


>gi|240169988|ref|ZP_04748647.1| N-6 DNA methylase [Mycobacterium kansasii ATCC 12478]
          Length = 497

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 122/278 (43%), Gaps = 48/278 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE L+ +  S+   GA  + TPRD++  A   ++DP  A           + DP CGT
Sbjct: 130 DAYEALLSKGASDKGSGAGQYFTPRDLIR-AIVDVIDPTPA---------DEVVDPACGT 179

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
           GGFL  A  H      +  + P    H       G EL   T  +    +L+  + +   
Sbjct: 180 GGFLLVAHEHAVQGAEN--LTPTKRKHLRDDFVTGYELVDATARLAAMNLLLHGIGT--- 234

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEHKNGE 320
            D    I+    L  D   G+R+   L+NPPFG+K           + ++ VE E ++  
Sbjct: 235 ADGDSLIEVRDALISD--PGRRWSVVLTNPPFGRKSSLTMVGADGREVREDVEIERQD-- 290

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  +   S+  + FL H+   L++     GRAA+VL  + LF G  G+GE+ +RR 
Sbjct: 291 ------FVVTTSNKQLNFLQHIMTILDI----NGRAAVVLPDNVLFEG--GAGET-LRRK 337

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           LL +  +  I+ LPT +F+   +   +     +   E+
Sbjct: 338 LLADFDLHTILRLPTGIFYAQGVKANVLFFDRKPASEQ 375


>gi|240125823|ref|ZP_04738709.1| hypothetical protein NgonSK_06352 [Neisseria gonorrhoeae SK-92-679]
 gi|268684422|ref|ZP_06151284.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268624706|gb|EEZ57106.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 533

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLESD-ENHE--RFFA 325

Query: 327 GLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI        +   LF+ H+   L+      G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPTKKEKMEIYQLFIQHILFSLK----ENGKAAIVLPTGFI---TAKSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   K    + KV LI+A+ L   I    
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKV--NKDKVVLIDASGLGEKISIND 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I   +  ++
Sbjct: 435 NQKTVLSHEEEQKICHTFTHKQ 456


>gi|218441052|ref|YP_002379381.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173780|gb|ACK72513.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 503

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 130/314 (41%), Gaps = 47/314 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L+ + G + ++G + F TPR++V     ++          +P +   +YDP C
Sbjct: 168 ISQVYEGLLLKMGEKNNDGGQ-FFTPREIVRAMIKII----------NPKVGEKIYDPAC 216

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP------HGQELEPETHAVCVAGMLIRRLESDP 268
           GTGGFL  +  ++ D       P  L P      +G+E E   + + +A +++  +  D 
Sbjct: 217 GTGGFLAQSYEYIRDNLGDDITPEQLEPLKLNTFYGREKENLIYPIALANLVLHGI--DL 274

Query: 269 RRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 N   G     DLF      F   L+NPPFG           KEHK  +  +F  
Sbjct: 275 PHLWHGNTLNGEVTYGDLFKDAPPLFDIILTNPPFGG----------KEHKTVQ-AQFD- 322

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K S   +LFL H+   L      GGR  IVL    LF         + +R LL +  
Sbjct: 323 --YKTSATQVLFLQHVIKSLA----PGGRCGIVLDEGVLFRTNE-KAFVQTKRKLLNDCN 375

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  I++LP   F          IL   K E    K+   + +D+  +      KR+ +N 
Sbjct: 376 LYCIISLPAGTFKAAGGGVKANILFFSKGEPTE-KIWYYDLSDISVT------KRKPLNL 428

Query: 447 DQRRQILDIYVSRE 460
               +   ++ SRE
Sbjct: 429 SDFEEFFKLFPSRE 442


>gi|323466193|gb|ADX69880.1| Site-specific DNA-methyltransferase (Adenine-specific)
           [Lactobacillus helveticus H10]
          Length = 484

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 143/335 (42%), Gaps = 48/335 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +++    +++   L KI K+ + ++    +  +  + ++YE L+ +  +EV  GA  + T
Sbjct: 92  YANASTAIDEPANLEKIIKDINDLDWW--SAREEGLGDLYEGLMEKNANEVKSGAGQYFT 149

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------CG 231
           PR ++++   +            P +     DP  GT GF+  A  ++ D          
Sbjct: 150 PRVLINMMVKMT----------EPKIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSELSE 199

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             +         G EL P TH + +    +  ++          ++QG +LS +    K 
Sbjct: 200 EKYDFQVKEAFSGMELVPNTHRLAIMNEYLHGMDG--------RLEQGDSLSANGKWMKN 251

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K            K GE         + S+  + FL  + N L+   +
Sbjct: 252 FDVVLTNPPFGTK------------KGGERVTRDDLTYETSNKQLNFLQIIYNSLK--RD 297

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+V+  + LF    G GE EIR+ LL    +  I+ LPT +F+   + T +   +
Sbjct: 298 GKARAAVVVPDNVLF--ADGVGE-EIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFT 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
             + EE +   +     D+   +R+ G KR  +ND
Sbjct: 355 --RGEEDKDNTKETWIYDMRHQMRSFG-KRNPLND 386


>gi|288932530|ref|YP_003436590.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642]
 gi|288894778|gb|ADC66315.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642]
          Length = 581

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 128/286 (44%), Gaps = 38/286 (13%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P  V+ + Y  ++  F  + ++  E++ TP ++V L   LL    D    E  G++ T+
Sbjct: 228 LPYDVIGDAYMWILNYFAPQKAKEGENY-TPIEIVKLVVNLL----DIEVDEESGVV-TV 281

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DP  G+G  L  + ++V +         +L+ +GQE       +    +++  +++   
Sbjct: 282 LDPALGSGSMLIVSRDYVREKYGKEG-EDVLMLYGQERNEIMGVIAKMNLILHDIKN--- 337

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA---VEKEHKNGELGRFGP 326
                 I  G +L+   F   +  Y ++NPP    W +D +    +E         +F  
Sbjct: 338 ----YEIFIGDSLANPRFP--QCDYVVANPP----WNQDYNVNGLIEDPKVKKIYTQFTS 387

Query: 327 GLP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            LP    +  G +  +++ A K         +  I+L +  LF G     E  IR  ++ 
Sbjct: 388 TLPPKNSMDWGWIQLMLYFARK---------KVGIILDNGALFRG---GSEKRIREAIVR 435

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
            DLIEA+V LP  LF+ T     + I +  K EER+GK+  INA++
Sbjct: 436 RDLIEAVVLLPEKLFYNTGAPGCVIIFNKNKPEERKGKILFINASN 481


>gi|330999088|ref|ZP_08322811.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
 gi|329575609|gb|EGG57143.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
          Length = 473

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 134/323 (41%), Gaps = 80/323 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   +YE ++++ G +   GA  + TPR ++     ++          SP +  T+ DP 
Sbjct: 126 VKGALYEAILQKNGQDKKSGAGQYFTPRPLIDAIVDVI----------SPKIGETVIDPA 175

Query: 214 CGTGGFLTDAMNHVADCG--------------SHHKIPPILVPHGQELEPETHAVCVAGM 259
           CGT GFL  A N++                    + I P++V  G  +    H V     
Sbjct: 176 CGTAGFLLSAFNYMKGQSMDTDLNIKLRNSSLKGYDITPLVVTLGS-MNLYLHGVG---- 230

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW----EKDKDAVEKE 315
               L S P       + Q S + +     K++   L+NPPFG +     E  +    KE
Sbjct: 231 ----LNSSPI------VCQDSLIKE---PDKKYDIVLANPPFGARAAGSVEIHRSDFIKE 277

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            KN ++                FL H+ + L+     GGRA +VL  + LF     SGE 
Sbjct: 278 TKNNQIN---------------FLQHIMSLLK----SGGRAGVVLPDNVLFES---SGE- 314

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           E+R+ LL +  +  I+ LPT +F+   + T +         E++GK +     +LW    
Sbjct: 315 EVRKKLLTDFNLHTILRLPTGIFYANGVQTNVLFF------EKKGKTK-----ELWVYDY 363

Query: 436 NEGKKRRIINDDQRRQILDIYVS 458
             G K  +  +  +R+ LD +VS
Sbjct: 364 RSGIKHTLATNPLKREDLDDFVS 386


>gi|260655883|ref|ZP_05861352.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella
           anthropi E3_33 E1]
 gi|260629499|gb|EEX47693.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella
           anthropi E3_33 E1]
          Length = 854

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 36/323 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V     +LL+    A   +    I+ +YDPT
Sbjct: 164 VLGFIYEYLISNFAANAGKKAGEFYTPHEV-----SLLMSEIVAHHLKDRQEIK-IYDPT 217

Query: 214 CGTGGFLTDAMNHVAD-CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  L +     A   GS   I    + + QEL+  T+ +    +++R +  D     
Sbjct: 218 SGSGSLLINIGKCAARYIGSEDNI----LYYAQELKENTYNLTRMNLVMRGIIPDNITTR 273

Query: 273 SKNIQQGSTLSKDLFTGKRFH------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           + +  +      D     R +        +SNPP+ + W    + V KE+ +     FG 
Sbjct: 274 NADTLEDDWPYFDDDDPTRTYNPLYVDAVVSNPPYSQAW----NPVGKEN-DPRYSNFGI 328

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             PK       FL+H  +   + P+G     IVL    LF G     E  IRR L+E + 
Sbjct: 329 A-PK-GKADYAFLLH--DLFHVKPDG--IMTIVLPHGVLFRG---GEEGTIRRNLIEGNY 379

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+A++ LP ++FF T I T + +L           V +++A+  +     +  K  ++  
Sbjct: 380 IDAVIGLPANIFFGTGIPTIIMVLKQPHGRADYTDVLIVDASKGF----EKAGKNNVLRA 435

Query: 447 DQRRQILDIYVSREN-GKFSRML 468
              ++I+D+  SR +  KFSR++
Sbjct: 436 CDIKKIVDVVTSRTSVPKFSRVV 458


>gi|302874006|ref|YP_003842639.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
 gi|307689745|ref|ZP_07632191.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
 gi|302576863|gb|ADL50875.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
          Length = 472

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 47/328 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +  +   +E+   L KI     G++ +  +  +  + N+YE L+ +  SE   GA  + T
Sbjct: 89  YQGSATNIEEPKNLEKIITTIDGLDWY--SAKEEGLGNLYEGLLEKNASEKKSGAGQYFT 146

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +    L+DP        PG      DP  GT GF+  A +++ +   ++     
Sbjct: 147 PRVLIDVMVK-LIDP-------RPG--EKCNDPAAGTFGFMIGADHYLKEKTDNYFDLDT 196

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  ETH + +   ++  +E         NI  G TL+       +
Sbjct: 197 DLAEFQRTKAFSGCELVHETHRLALMNAMLHGIEG--------NIILGDTLTNVGKQMNQ 248

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               LSNPPFG K            K GE           S+  + FL H+   L+   +
Sbjct: 249 LDVVLSNPPFGTK------------KGGERATRDDLTYMTSNKQLNFLQHIYRSLK--AD 294

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              RAA+VL  + LF  + G G ++IR  L++   +  I+ LPT +F+   + T +   +
Sbjct: 295 NKARAAVVLPDNVLF--QEGDG-TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 351

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGK 439
             K  E +G  + +   DL T++ + GK
Sbjct: 352 RGK--EDKGNTKEVWFYDLRTNMPSFGK 377


>gi|4210349|emb|CAA10699.1| HsdM protein [Escherichia coli]
          Length = 325

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 32/220 (14%)

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTG 289
           SH      +  +GQEL   T+ +    + IR         LS N+ +    T   D    
Sbjct: 14  SHQGKSRDIALYGQELTATTYKLAKMNLAIR--------GLSANLGERPADTFFSDQHPD 65

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLE 347
            +  Y L+NPPF  K W  + +  +         RF G  +P   + +  +++H+ +KL 
Sbjct: 66  LKADYILANPPFNLKDWRNEAELTKDP-------RFAGYRMPPTGNANYGWILHMLSKL- 117

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +  G A  VL++  + +    SGE EIR  ++ENDLI+ ++ALP  LF+ T I   L
Sbjct: 118 ---SANGTAGFVLANGSMSSNT--SGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCL 172

Query: 408 WILSNRKT-------EERRGKVQLINATDLWTSIRNEGKK 440
           W ++  K         +R+G+   I+A +L T I    K+
Sbjct: 173 WFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTKE 212


>gi|188586602|ref|YP_001918147.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351289|gb|ACB85559.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 479

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 50/285 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L+ +  +E   GA  + TPR ++     L  DP+       PG      DP  
Sbjct: 122 LGALYEGLLEKNANETKTGAGQYFTPRPLIDTIVELT-DPE-------PG--ERCNDPAA 171

Query: 215 GTGGFLTDAMNHVADCGSHH-----KIPPILVPH---GQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A  HV      +     K     V     G EL  + H + +   ++  LE 
Sbjct: 172 GTFGFMIAADRHVRKKTDDYFSLSQKEAEFQVKEAFTGCELVKDVHRLGLMNAMLHELEG 231

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +        I  G TLS+     K +   L+NPPFG K            K+GE      
Sbjct: 232 E--------IILGDTLSEAGKNLKNYDVVLTNPPFGTK------------KSGERPTRDD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                ++  + FL H+   L+  PNG  RAA+VL  + LF    G   ++IR  L+E   
Sbjct: 272 LTYTTTNKQLNFLQHIYRSLK--PNGKARAAVVLPDNVLFEDNTG---AKIRNDLMEKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           +  I+ LPT +F+   + T +   +       RG+    N  ++W
Sbjct: 327 LHTILRLPTGIFYAQGVKTNVLFFT-------RGQTDKDNTKEVW 364


>gi|329730505|gb|EGG66894.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 240

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 19/186 (10%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 1   IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 55

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 56  FAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 108

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 109 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 162

Query: 455 IYVSRE 460
            Y  +E
Sbjct: 163 TYKRKE 168


>gi|218709368|ref|YP_002416989.1| type I restriction enzyme EcoKI M subunit [Vibrio splendidus LGP32]
 gi|218322387|emb|CAV18540.1| Type I restriction enzyme EcoKI, M subunit [Vibrio splendidus
           LGP32]
          Length = 484

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 154/370 (41%), Gaps = 57/370 (15%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRV-MSNIYEHLIRRFGSE 169
           +AIF++ + + T     +   L ++  N   +E    DT   R    ++YE L+++  +E
Sbjct: 87  RAIFQNVNTTIT-----QPAQLTELVDNMDKLEWFDGDTGKSRDDFGDMYEGLLQKNANE 141

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
              GA  + TPR ++     ++           P     + DP  GT GFL +A  ++  
Sbjct: 142 TKSGAGQYFTPRSLISTIIKVM----------QPQPREVIQDPAAGTAGFLIEADKYIKS 191

Query: 230 ----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                          ++    V  G EL PET  + +   L+  +E D        I+ G
Sbjct: 192 RTNDLDDLDDDDQEFQMTKAFV--GLELVPETRRLALMNCLLHDIEGDAEEGA---IRLG 246

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +TL     T  + +  L+NPPFG     +       H  G             +  + F+
Sbjct: 247 NTLGSAGETLPQANVILTNPPFGSASSTNITRTFV-HPTG-------------NKQLCFM 292

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H+ + LE     GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+
Sbjct: 293 QHIYDALE----PGGRAAVVIPDNVLFEGGKG---ADIRRDLMDKCNLHTILRLPTGIFY 345

Query: 400 RTNIATYLWIL---SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              + T +      + +   + +G  +     D+ T++   G KRR + +      ++ Y
Sbjct: 346 AAGVKTNVLFFQKGTQQDPNQDKGCTKETWVFDMRTNMNTFG-KRRPLTEKHFDVFVNAY 404

Query: 457 VSRENGKFSR 466
            S  NG  +R
Sbjct: 405 GSDTNGLSAR 414


>gi|237739318|ref|ZP_04569799.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           2_1_31]
 gi|229422926|gb|EEO37973.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           2_1_31]
          Length = 474

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 118/297 (39%), Gaps = 57/297 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCG 215
           ++YE L+ +  SE   GA  + TPR ++           D + K + P +   + DP  G
Sbjct: 125 DLYEGLLEKNASEKKSGAGQYFTPRVLI-----------DTIVKVTKPQLKERICDPASG 173

Query: 216 TGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GF+  A  ++ +            +           EL P+TH + +   L+  +E  
Sbjct: 174 TLGFIISANRYIKEKNDDYYGISEEDYAFQKKEAFSACELVPDTHRLGIMNALLHGVEG- 232

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                  N  QG TLS      K F   LSNPPFG K            K GE       
Sbjct: 233 -------NFLQGDTLSATGTQLKNFDLILSNPPFGTK------------KGGERATRDDL 273

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   S+  + FL  +   L L   G  RA +VL  + LF G  G    +IR+ LL    +
Sbjct: 274 VFSSSNKQLNFLEIIYRSLNL--TGRARAGVVLPDNVLFEGGIG---KDIRQDLLNKCNV 328

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW-----TSIRNEGK 439
             I+ LPT +F+   + T +           R K  + N  D+W     T++ N GK
Sbjct: 329 HTILRLPTGIFYAQGVKTNVLFFD-------RAKTDIGNTKDIWFYDLRTNMPNFGK 378


>gi|92112219|ref|YP_572147.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043]
 gi|91795309|gb|ABE57448.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043]
          Length = 495

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 47/276 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +   +   GA  + TPR ++    A +        +  PG  +T+ DP+
Sbjct: 125 VKGDIYESLLEKNAEDTKSGAGQYFTPRALIQAMVACV--------QPQPG--KTIADPS 174

Query: 214 CGTGGFLTDAMNHVADCGS------------HHKIPPILVPHGQELEPETHAVCVAGMLI 261
            GTGGF   A + + +               HH        HG E+   T  +C+  + +
Sbjct: 175 AGTGGFFLAAYDWITEHHGARMDREQKQFLKHHAF------HGNEIVANTRRLCLMNLFL 228

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                    ++ +   Q +    D   G    R+ Y L+NPPFG+K        E E + 
Sbjct: 229 --------HNIGEIDDQPNIAPTDALIGPAPARYDYVLANPPFGRKSSMTVTNEEGEQEK 280

Query: 319 GELGRFGPGL-PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
            +            S+  + F+ H+   L+      G+AA+V+  + LF G  G+GE+ +
Sbjct: 281 EDFVYNRQDFWATTSNKQLNFVQHIRTMLK----ENGQAAVVVPDNVLFEG--GAGET-V 333

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           RR LL    +  I+ LPT +F+   +   +    N+
Sbjct: 334 RRKLLTTTELHTILRLPTGIFYANGVKANVLFFDNK 369


>gi|257083311|ref|ZP_05577672.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein
           [Enterococcus faecalis Fly1]
 gi|256991341|gb|EEU78643.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein
           [Enterococcus faecalis Fly1]
          Length = 454

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D  +S+IYE+L+ +F + ++     + TP+++ ++   +L    +   +ES     ++YD
Sbjct: 89  DDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTSGREE--EES----FSIYD 142

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+G  L    +++ +  SH +   ++   GQE +   + +    +++  +E +   D
Sbjct: 143 PTVGSGSLLLTTASYMKN--SHKR--GMIKYFGQEKDATPYRLSRMNLMMHGVEYN---D 195

Query: 272 LSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGE 320
           +S  I    TL  D   G        + F   ++NPP+   W   +++ D   +E+    
Sbjct: 196 IS--INHADTLESDWPDGVVDGKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREY---- 249

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 G+   +     FL+H    LE      GR AI+L    LF G A   E  IR+ 
Sbjct: 250 ------GIAPKTKADYAFLLHCLYHLE----DNGRMAIILPHGVLFRGAA---EGRIRKA 296

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           L++   IE ++  P  LF  T+I   + IL   +T
Sbjct: 297 LIDKHQIETVIGFPDKLFLNTSIPVCVLILRKNRT 331


>gi|189347939|ref|YP_001944468.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
 gi|189342086|gb|ACD91489.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
          Length = 772

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 134/332 (40%), Gaps = 72/332 (21%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ K  S I   P ++       IYE+ +  F     +G  +F TP  +V L T ++
Sbjct: 140 LLKQLLKKVSEI---PASMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPVSIVRLLTEVI 196

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI----PPILVPH---G 244
                      P   R L DP CG+GG    +   VA   +  ++     P L+P    G
Sbjct: 197 ----------EPYHGRIL-DPACGSGGMFVSSARFVAQQKAKTRLTPPSSPALLPEVEGG 245

Query: 245 QELEPET-------HAVCVAGMLIRRLESDPRRDLS-----KNIQQGSTLSKDL----FT 288
           +E  P +             G  + +   DP R+LS     K  + G     +L      
Sbjct: 246 EEYAPSSTRSLPKVEGGLSVGHDVTQYSGDPNRELSIHGIEKTDETGRLCRLNLAVHGLE 305

Query: 289 GKRFH-------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGP 326
           G+  H                   + L+NPPF      + +AV+KE     +G   RF  
Sbjct: 306 GRIMHGGNVNSYYDDPHEATGNFDFVLANPPF------NVNAVDKERLKDSVGPGRRFPF 359

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP+  + + L++    + L    N  GRA  V+++S      A S E EIRR L+E   
Sbjct: 360 GLPRTDNANYLWIQLFYSAL----NERGRAGFVMANS---ASDARSSEQEIRRQLVEIRA 412

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++ +VA+  ++F+   +   LW     K + R
Sbjct: 413 VDVMVAVGPNMFYTVTLPCTLWFFDKAKAKAR 444


>gi|56419915|ref|YP_147233.1| type I restriction-modification system DNA methylase [Geobacillus
           kaustophilus HTA426]
 gi|56379757|dbj|BAD75665.1| type I restriction-modification system DNA methylase [Geobacillus
           kaustophilus HTA426]
          Length = 503

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 107/484 (22%), Positives = 190/484 (39%), Gaps = 107/484 (22%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +++ A  + G     D+   +LP   LR L    E  R               +LE  VK
Sbjct: 1   MFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRK--------------ELEQIVK 46

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFS---DNAKA--IFEDFDFSSTI 124
             G  +Y   +     + +   +   E+       AS+S    NAK   I E  D  + +
Sbjct: 47  DPGSDWYTEDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILD--NAM 104

Query: 125 ARLEKA-----GLLYKICKNFSGIELHPDTVPD------------------RVMSNIYEH 161
            RLE+      G+L +I   + G  L P+ V                     ++   YE+
Sbjct: 105 KRLEEENPELEGILPRI---YQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEY 161

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I  F +       +F TP  +V L  A+L +P   +          ++DP CG+GG   
Sbjct: 162 FISSFAASEGNRGGEFFTPSSIVKLLVAML-EPKSGI----------VFDPACGSGGMFI 210

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +  +  +  +       L  +GQE    T  +    +L+  + ++        I+ G +
Sbjct: 211 QSEEYAPNKHA-------LSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDS 255

Query: 282 LSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP---GLPKISDGSML 337
           L  D F   +  Y ++NPPF +K W  D+           L +  P   G    S+ + +
Sbjct: 256 LLNDQFPDLKADYVIANPPFNQKDWGADR-----------LSKNDPRLIGPVTNSNANYM 304

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    L    N  G A  V+++  +        E E+R+ L++   I+ IV LP  L
Sbjct: 305 WMQHFLYHL----NDTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDCIVQLPEKL 358

Query: 398 FFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           FF T I   L+ LS  +        R+ ++  I+A  + T +    +K++ ++ ++  +I
Sbjct: 359 FFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKALSKEEIDKI 415

Query: 453 LDIY 456
             +Y
Sbjct: 416 AAVY 419


>gi|194098760|ref|YP_002001822.1| hypothetical protein NGK_1197 [Neisseria gonorrhoeae NCCP11945]
 gi|239999053|ref|ZP_04718977.1| hypothetical protein Ngon3_06190 [Neisseria gonorrhoeae 35/02]
 gi|268594897|ref|ZP_06129064.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02]
 gi|193934050|gb|ACF29874.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268548286|gb|EEZ43704.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02]
 gi|317164346|gb|ADV07887.1| hypothetical protein NGTW08_0919 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 533

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+             L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHVIGEDKCMIYTQDISQKSSNLLRLNLSLNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E + +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGCLKKFDFIVSNPPFKLDFSDFRDRLESD-ENHE--RFFA 325

Query: 327 GLPKIS-------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI        +   LF+ H+   L+      G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPTKKEKMEIYQLFIQHILFSLK----ENGKAAIVLPTGFI---TAKSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T   T + IL   K    + KV LI+A+ L   I    
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKV--NKDKVVLIDASGLGEKISIND 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++ ++ ++I   +  ++
Sbjct: 435 NQKTVLSHEEEQKICHTFTHKQ 456


>gi|149177180|ref|ZP_01855786.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Planctomyces maris DSM 8797]
 gi|148843894|gb|EDL58251.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Planctomyces maris DSM 8797]
          Length = 489

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 61/316 (19%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +V    MS++YE  I+  G+    G E + TPR ++     ++          +P +  T
Sbjct: 151 SVEKHEMSHLYESKIQNMGNAGRNGGE-YYTPRPLIRAIVKVI----------NPQIGET 199

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH------HKIPPILVPH---GQELEPETHAVCVAGM 259
           +YD   G+ GFL +A + ++D  +H      HK   IL      G+E +     +    M
Sbjct: 200 IYDAAVGSAGFLVEAFDFLSDESNHGGKKLSHKDARILQQKTFTGKEKKSLAFIIGTMNM 259

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  +E       + N+   ++L++   D+    RF  CL+NPPFG K  K         
Sbjct: 260 ILHGIE-------APNLIHTNSLTENLADIQEKDRFDICLANPPFGGKERK--------- 303

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
              E+ +  P   K  + + LFL H    L+     GGRA IV+ ++ L N    S    
Sbjct: 304 ---EVQQNFP--IKTGETAFLFLQHFIKLLK----AGGRAGIVIKNTFLSNSDNAS--VS 352

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-----------RGKVQLI 425
           +R+ LLE+  +  I+ LP   F    + T +      K   +            GK   +
Sbjct: 353 LRKQLLESCDLHTILDLPGGTFTGAGVKTVVLFFEKGKATRKIWYYQLNPGRNLGKTNPL 412

Query: 426 NATDLWTSIRNEGKKR 441
           N  DL   ++ + KK+
Sbjct: 413 NEADLAEFVKLQPKKK 428


>gi|309811650|ref|ZP_07705429.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
 gi|308434451|gb|EFP58304.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
          Length = 500

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 133/321 (41%), Gaps = 31/321 (9%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     R+     L ++  +  G E    T  D +  + YE L+ +  S+   GA  + T
Sbjct: 94  FRKAQNRVTDPAKLRRLVVDLIGKENWSQTGTD-INGDAYEGLLAKGASDKGSGAGQYFT 152

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------GSH 233
           PR ++                  PG+   + DP CGTGGFL  A  H +           
Sbjct: 153 PRALIQAIVD----------VVDPGVDDRVTDPACGTGGFLLVAHEHASANVNEMTPNQR 202

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           H +      HG EL   T  +    +L+  + S     L   I    +LS D  TG+R+ 
Sbjct: 203 HNLQHSFA-HGVELVDGTARLAAMNLLLHGMGSSNGDSL---IHVRDSLSAD--TGERWS 256

Query: 294 YCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             LSNPPFG+K        + +E ++         +   S+  + F+ H+   LE     
Sbjct: 257 VVLSNPPFGRKSSVTMMGADGRESRDDREIERQDFVATTSNKQLNFVQHIMTILET---- 312

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRAA+VL  + LF G  G+GE+ IRR LL +  +  ++ LPT +F+   I   +     
Sbjct: 313 NGRAAVVLPDNVLFEG--GAGET-IRRKLLNDYDLHTMLRLPTGIFYAQGIKANVLFFDR 369

Query: 413 RKTEERRGKVQLINATDLWTS 433
           +     R   Q +   DL T+
Sbjct: 370 KMARPGRPWTQKLWVYDLRTN 390


>gi|217968469|ref|YP_002353703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|217505796|gb|ACK52807.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 517

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 168/426 (39%), Gaps = 46/426 (10%)

Query: 15  IWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
           +W  A+ LW +   K ++F   +L    LR  E       + + E  L       ++E F
Sbjct: 12  LWAAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLIESGLGVS----EIEKF 67

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKA 130
              A  + Y       S L       +L   +       +A  E+       +  RL   
Sbjct: 68  DYQAEGALYLPDNAHFSYLLDLAEGQDLGKAVNEAMAAVEAENEELKGVLPRSYGRLPNT 127

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +L ++ +  +G+      V       IYE+ + +F     +    F TP  +V L   +
Sbjct: 128 -VLVELLRVLNGL----GEVEGDAFGKIYEYFLGKFALAEGQKGGVFYTPTSIVKLIVEI 182

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-IPPILVPHGQELEP 249
           + +P              ++DP CG+GG    +   V+    H K     L  +G E   
Sbjct: 183 I-EPFHG----------KIFDPACGSGGMFVQSAQFVS---RHQKRAAEELTVYGTEKAN 228

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           +T  +    + +  L  D R   +        +  +  TGK F + ++NPPF      + 
Sbjct: 229 DTVKLAKMNLAVHGLSGDIRESNTYYEDPHKAVVGN--TGK-FDFVMANPPF------NV 279

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             V+KE    +  RF  G+P   + + L++ H    L    N  GRA  V+++S    G 
Sbjct: 280 SGVDKERVKDD-PRFPFGIPTTDNANYLWIQHFYTAL----NERGRAGFVMANSA---GD 331

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINAT 428
           A   E EIR+ L++   ++ IV++ ++ F+   +   LW     K + ER+ +V  I+A 
Sbjct: 332 ARGTELEIRKKLIQTGGVDVIVSVGSNFFYTVTLPCTLWFFDRAKAKGERKDEVLFIDAR 391

Query: 429 DLWTSI 434
             +  +
Sbjct: 392 GTYRQV 397


>gi|126667623|ref|ZP_01738592.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
 gi|126627892|gb|EAZ98520.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
          Length = 576

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 140/347 (40%), Gaps = 50/347 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR +++   A +           P     + DP  
Sbjct: 170 LGDLYEGLLEKNANETKSGAGQYFTPRALINTMVACI----------KPQAGEMIQDPAA 219

Query: 215 GTGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  A  HV D                      G EL P T  + +   L+  +E 
Sbjct: 220 GTAGFLIAADQHVKDQTDQLFDLNARQQAFQRNDAFVGIELVPSTRRLALMNCLLHGMEG 279

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D        I  G+ L +     K+    L+NPPFG     D      +           
Sbjct: 280 DEE----GVIHLGNALGQQGAGLKKADVILANPPFGTSKGGDASITRDDLTY-------- 327

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K S+  + FL H+   L+     GGRAA+VL  + LF   AG G +E+RR L+    
Sbjct: 328 ---KTSNKQLAFLQHIYRNLK----PGGRAAVVLPDNVLF--EAGVG-TEVRRDLMHKCN 377

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD-LW-----TSIRNEGKK 440
           +  I+ LPT +F+   + T +   +     +++   Q  N+TD +W     T++ + G K
Sbjct: 378 LHTILRLPTGIFYAQGVKTNVLFFTKGSATDKQ---QEENSTDNVWIYDLRTNMTSFG-K 433

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           R    +   +    +Y    NG+  R     +F   +I +   ++++
Sbjct: 434 RTPFGEQHLKPFEAVYGDDSNGQSPRTEGEWSFHSDKIDLPEEIKVT 480


>gi|323157624|gb|EFZ43730.1| hypothetical protein ECEPECA14_0478 [Escherichia coli EPECa14]
          Length = 489

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   K  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMKTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|260858510|ref|YP_003232401.1| type I restriction-modification enzyme M subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757159|dbj|BAI28661.1| type I restriction-modification enzyme M subunit [Escherichia coli
           O26:H11 str. 11368]
          Length = 493

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   K  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMKTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|294782548|ref|ZP_06747874.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481189|gb|EFG28964.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 498

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 136/312 (43%), Gaps = 46/312 (14%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-V 154
            RN    +I +  ++  ++F  +   + I ++    +L         I  +P  V D+  
Sbjct: 92  VRNEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +    G   F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSGKNGQ--FRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++        A     +K     + HG + +     +    +L+  +++
Sbjct: 199 GTSGFLVSSIEYIKKNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMKT 258

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P+      +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 259 -PK------LKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLFG--ASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF 398
           +EA++++P+ +F
Sbjct: 355 LEAVISMPSGVF 366


>gi|167970986|ref|ZP_02553263.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701152|gb|EDU19434.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 367

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 139/317 (43%), Gaps = 30/317 (9%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  + YE+L+  + +   +   +F TP++V  L   L L   +   K+    I  +YDP 
Sbjct: 20  VFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDPC 79

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L            + K+   +  +GQE+   T+ +    M +  +  D      
Sbjct: 80  CGSGSLLL----------KYAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDKF---- 125

Query: 274 KNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +I+ G TL        K F   +SNPP+  KWE   + +    +   + +  P      
Sbjct: 126 -DIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLANDERFHVTQLAPK----G 180

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAIV 391
                F++H+ + L    +  G AAIV+    L+   A   E +IR++L    +++++++
Sbjct: 181 KADFAFVLHILHNL----SSSGTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDSVI 233

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+I+T + +L  RK +        I   D        G K ++ N + ++ 
Sbjct: 234 QLPDNLFFGTSISTCIIVL--RKNKNNNDNANGILFVDASKEFVKSGIKNKLTNANIKKI 291

Query: 452 ILDIYVSRENGKFSRML 468
           +  I   +E   FS+++
Sbjct: 292 VDTIRFKKEVTYFSKLV 308


>gi|84616896|emb|CAJ13790.1| type I restriction-modification system, M subunit [Desulfococcus
           multivorans]
          Length = 488

 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 118/262 (45%), Gaps = 48/262 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  + G  ++ TPR V      +L           P + +T+ DP
Sbjct: 143 HLFNDIYEKILSDLQSAGNAG--EYYTPRAVTQFMVDML----------DPQLGQTILDP 190

Query: 213 TCGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFLT A+ H    V       ++   +  HG E +P  H + +  M++  +    
Sbjct: 191 ACGTGGFLTCAIEHLNKQVKTAEDRKRLQECI--HGVEKKPLPHMLAMTNMMLHGI---- 244

Query: 269 RRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D+  N++  +TLS   KD     R    ++NPPFG     ++D +E         R  
Sbjct: 245 --DVPTNVRHDNTLSRPLKDYGPRDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
               + +D  M  +MHL        +  G+AA+VL    LF    G G ++ ++R LLE 
Sbjct: 298 ----ETADLFMALIMHLLK------HDTGKAAVVLPDGFLF----GEGTKTNLKRELLEE 343

Query: 385 DLIEAIVALPTDLFF-RTNIAT 405
             +  IV LP  +F   T+IAT
Sbjct: 344 FNLHTIVRLPKGVFSPYTSIAT 365


>gi|120601905|ref|YP_966305.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120562134|gb|ABM27878.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 495

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 48/310 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +   +   GA  + TPR ++  A    + P+       PG  +T+ DP 
Sbjct: 125 VKGDIYEGLLEKNAEDTKSGAGQYFTPRPLIK-AIVDCMHPE-------PG--KTISDPA 174

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLES- 266
           CGTGGFL  A + + D   G   K     +      G E+ P T  +C+  +L+  + S 
Sbjct: 175 CGTGGFLLAAYDFILDRYKGQLDKAQVAYLKEGAFTGNEIVPNTRRLCLMNLLLHGIGSI 234

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK----WEKDKDAVEKEHKNGELG 322
           D    +  +    ST S  +       Y L+NPPFGKK       D    EKE       
Sbjct: 235 DGEPPIHPDDALLSTPSSTV------DYVLTNPPFGKKSTMTVTNDDGKQEKEDFVYNRQ 288

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            F        +  + F+ H+ + L+      G+AA+V+  + LF G  G GE+ +R+ L+
Sbjct: 289 DF---WVTTGNKQLNFVQHIRSMLK----STGKAAMVVPDNVLFEG--GGGET-VRKELM 338

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW-----TSIRNE 437
           +   +  I+ LPT +F+   +   +    N++  ++          D+W     T+I + 
Sbjct: 339 KTTNLHTILRLPTGIFYAHGVKANVIFFDNKEASKKPW------TKDIWFYDYRTNIHHT 392

Query: 438 GKKRRIINDD 447
            K++ +  DD
Sbjct: 393 LKRKPLTYDD 402


>gi|282883061|ref|ZP_06291662.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281297118|gb|EFA89613.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 280

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 26/228 (11%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFG 302
           GQE+      +C   M +  +  +     + +I++G TL   L   ++ F   +SNPP+ 
Sbjct: 16  GQEINMTNFNLCRMNMFLHNVNYN-----NFSIKRGDTLLAPLHNDEKPFDAIVSNPPYS 70

Query: 303 KKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            KW  D D  +  + +    G+  P     +     F++H  + L    +  GRAAIV  
Sbjct: 71  IKWVGDNDPTLINDIRFAPAGKLAPK----NYADFAFILHALSYL----SSKGRAAIVCF 122

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
               +  R G+ E  IR++L++N  ++A++ LP +LFF T+IAT + +++  KTE    K
Sbjct: 123 PGIFY--RKGA-EKTIRKYLVDNSFVDAVIQLPENLFFGTSIATCVLVMAKNKTE---NK 176

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
           V  I+A++ +  + N      I+ ++   +I+D +  R E   FSR +
Sbjct: 177 VLFIDASNEFKKVTNNN----ILEEENINKIVDEFRDRKEIEYFSRYV 220


>gi|146281028|ref|YP_001171181.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145569233|gb|ABP78339.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 515

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 158/402 (39%), Gaps = 61/402 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++    RL++   L ++ K+  GI+    +     + ++YE L+ +  SE   GA  + T
Sbjct: 94  YADAQTRLKEPRHLEQLIKSLDGIDWF--SARQDGLGDLYEGLLEKNASETKSGAGQYFT 151

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPP 238
           PR         L+D      K  PG   T+ DP  GT GFL  A  ++      H+ +  
Sbjct: 152 PRP--------LIDSIINCLKPQPG--ETIQDPAAGTAGFLIAADAYIKRHTDDHYDLDA 201

Query: 239 ILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G EL P T  + +   L+  +E D        +  G+ L +      +
Sbjct: 202 KAQAFQRNRAFVGVELVPGTRRLALMNTLLHSMEGDEE----GVVHLGNALGQTGANLPK 257

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP----KISDGSMLFLMHLANKLE 347
               LSNPPFG                   G  GP       K S+  + FL H+   L+
Sbjct: 258 VDVILSNPPFGTAK----------------GGGGPTRDDLTYKTSNKQLAFLQHIYRGLK 301

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRAA+VL  + LF   AG G +++RR LL+   +  I+ LPT +F+   + T +
Sbjct: 302 ----PGGRAAVVLPDNVLF--EAGVG-TDVRRDLLDKCNLHTILRLPTGIFYAQGVKTNV 354

Query: 408 WIL---SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                 +     + +G  Q +   DL +++ + G KR        +   D Y    N   
Sbjct: 355 LFFQKGTQDNPRQEQGCTQRVWIYDLRSNMPSFG-KRTPFGAQHLKPFEDAYGEDANSNS 413

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           SR  +    G   +   R     FI ++        DI+W K
Sbjct: 414 SRAENVEGIG--ELSRFRVFTRDFIRERGD----SLDISWLK 449


>gi|224419061|ref|ZP_03657067.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253828001|ref|ZP_04870886.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142569|ref|ZP_07804762.1| HsdM [Helicobacter canadensis MIT 98-5491]
 gi|253511407|gb|EES90066.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131600|gb|EFR49217.1| HsdM [Helicobacter canadensis MIT 98-5491]
          Length = 499

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 57/268 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L++  GS+     E F TPR +V +   ++          +P     +YDP C
Sbjct: 154 LGDVYEKLLKDMGSDGGNSGE-FYTPRALVKVMVEVI----------NPKPKERIYDPAC 202

Query: 215 GTGGFLTDAMNHV--ADCGSHHKIPPIL---------VPHGQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+   D     K    +            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYEDRAKGQKANLSVEELEFLQKDALFGKEKTPLSYAMGVMNMILHG 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++       S NI + +TLSK   D+   +R+   L+NPPFG K        EKE   G 
Sbjct: 263 IK-------SPNIIKTNTLSKRITDITESERYEVILANPPFGGK--------EKEQIQGN 307

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  +   +   +LFL H+   L+      GR AI++    LF  +  +   ++++ 
Sbjct: 308 F------IVPSNATELLFLQHILKSLK----TNGRCAIIVPEGVLF--QNSNAFVKVKQD 355

Query: 381 LLENDLIEAIVALPTDLFF-----RTNI 403
           L+EN  +E +++LP+ +F      +TN+
Sbjct: 356 LIENYNLECVLSLPSGVFLPYSAVKTNV 383


>gi|153833416|ref|ZP_01986083.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01]
 gi|148870304|gb|EDL69234.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01]
          Length = 528

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 135/324 (41%), Gaps = 50/324 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     ++           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRSLISTIIKVM----------QPQPREIIQDPAAG 177

Query: 216 TGGFLTDA----------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           T GFL +A          +  ++D     ++    V  G EL PET  + +   L+  +E
Sbjct: 178 TAGFLIEADKYIKANTNDLEDLSDDDQEFQMKKAFV--GLELVPETRRLALMNCLLHDIE 235

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D   D    I+ G+TL        +    L+NPPFG     +       H  G      
Sbjct: 236 GD---DNEGAIRLGNTLGSAGENLPKADVILTNPPFGSAASTNITRTFV-HPTG------ 285

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                  +  + F+ H+ + LE     GGRAA+V+  + LF G  G   ++IRR L++  
Sbjct: 286 -------NKQLCFMQHIYDALE----PGGRAAVVIPDNVLFEGGKG---TDIRRDLMDKC 331

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRR 442
            +  I+ LPT +F+   + T +        E   + +G        D+ T++   G KRR
Sbjct: 332 NLHTILRLPTGIFYAAGVKTNVLFFQKGTPENPQQDKGCTVDTWVFDMRTNMNTFG-KRR 390

Query: 443 IINDDQRRQILDIYVSRENGKFSR 466
            + +      ++ Y + +NG+  R
Sbjct: 391 PLTEKHFDAFVNAYGADKNGQSVR 414


>gi|289423012|ref|ZP_06424832.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156586|gb|EFD05231.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 292

 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 28/232 (12%)

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPF 301
           +GQE+   T+ +C   M +  +  D       NI    TL +   +  + F   +SNPP+
Sbjct: 27  YGQEINITTYNLCRINMFLHDIGFDKF-----NIACEDTLIAPAHWDDEPFELIVSNPPY 81

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             KW  D + +          RF P   L   S   + F+MH  + L       G AAIV
Sbjct: 82  SIKWAGDNNPLLINDP-----RFSPAGVLAPKSKADLAFIMHSLSWLA----SNGTAAIV 132

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
                ++ G A   E +IR++L++N+ ++ I+ LP +LFF T+IAT + ++   K +   
Sbjct: 133 CFPGIMYRGGA---EKKIRKYLIDNNFVDCIIQLPPNLFFGTSIATCIMVMKKNKAD--- 186

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDY 470
            K   I+A++    + N  K    +  D   +I++ + +R E   FS +  Y
Sbjct: 187 NKTLFIDASNECVKVTNNNK----LTQDNMDKIVECFANRSEIAHFSHLATY 234


>gi|290474453|ref|YP_003467333.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii
           SS-2004]
 gi|289173766|emb|CBJ80546.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii
           SS-2004]
          Length = 534

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 59/291 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE+L+ +  +    G   F TPR ++     L+          +P    T+ DP 
Sbjct: 157 VKGDIYEYLLSKLTTAGINGQ--FRTPRHIIDAMIELI----------NPQPTDTVCDPA 204

Query: 214 CGTGGFLTDAMNHVA------------DCGSHHKIPPILVPH----------GQELEPET 251
           CGT GFLT  M ++             D G+ H    +L P+          G + +   
Sbjct: 205 CGTAGFLTRIMEYLNRVHSSEFGILEDDDGNKHYTGDLLEPYRDHINKKMFWGFDFDTTM 264

Query: 252 HAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             V    M +  +       +  LSK+I++     ++ F    F   L+NPPF       
Sbjct: 265 LRVSSMNMALHGVNGANILYQDSLSKSIKENFPQQEENF----FDVILANPPF------- 313

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K ++++ + N ++     GL K     +LF+ H+   L+L    GGRAA+++    LF  
Sbjct: 314 KGSLDETNTNPDV----LGLVKTKKTELLFVAHILRALKL----GGRAAVIVPDGVLFG- 364

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
            +     ++R+ L+EN+ +E IV+LP+ +F   T ++T + + +   + ER
Sbjct: 365 -SSKAHQQLRQELIENNQLEGIVSLPSGVFKPYTGVSTAILMFTKGGSTER 414


>gi|262066435|ref|ZP_06026047.1| type I restriction enzyme StySPI M protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379862|gb|EFE87380.1| type I restriction enzyme StySPI M protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 474

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 118/297 (39%), Gaps = 57/297 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCG 215
           ++YE L+ +  SE   GA  + TPR ++           D + K + P +   + DP  G
Sbjct: 125 DLYEGLLEKNASEKKSGAGQYFTPRVLI-----------DTIVKVTKPQLKERICDPASG 173

Query: 216 TGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GF+  A  ++ +            +           EL P+TH + +   L+  +E  
Sbjct: 174 TLGFIISANRYIKEKNDDYYGISEEDYAFQKKEAFSACELVPDTHRLGIMNALLHGVEG- 232

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                  N  QG TLS      K F   LSNPPFG K            K GE       
Sbjct: 233 -------NFLQGDTLSATGTQLKNFDLILSNPPFGTK------------KGGERATRDDL 273

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   S+  + FL  +   L L   G  RA +VL  + LF G  G    +IR+ LL    +
Sbjct: 274 VFSSSNKQLNFLEIIYRSLNLT--GRARAGVVLPDNVLFEGGIG---KDIRQDLLNKCNV 328

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW-----TSIRNEGK 439
             I+ LPT +F+   + T +           R K  + N  D+W     T++ N GK
Sbjct: 329 HTILRLPTGIFYAQGVKTNVLFFD-------RAKSDIGNTKDIWFYDLRTNMPNFGK 378


>gi|158335391|ref|YP_001516563.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
 gi|158305632|gb|ABW27249.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
          Length = 486

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 116/264 (43%), Gaps = 51/264 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L++      + G  +F TPR V   A          + + +P +   + DP 
Sbjct: 151 LFGDMYEQLLKDLQGAGNAG--EFYTPRAVTQFA----------IDRVNPQLGERVLDPA 198

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CGTGGFLT A  H+     GS           G E +P  H +CV  ML+  LE      
Sbjct: 199 CGTGGFLTCAFEHLKQQVQGSQDLEQAKQGVWGVEKKPLPHLLCVTNMLVHGLE------ 252

Query: 272 LSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +  N++  +TL K   D     +    ++NPPFG     ++D +E+            G 
Sbjct: 253 VPTNVRHDNTLRKPLRDYARADQVDVVVTNPPFGG---MEEDGIER------------GF 297

Query: 329 P---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
           P   +  + + LFL+ +   L+     GGRAAIVL    LF    G G ++ I+  LL  
Sbjct: 298 PTEFRTRETADLFLVLVMELLK----AGGRAAIVLPDGTLF----GEGIKTRIKEKLLRE 349

Query: 385 DLIEAIVALPTDLFF-RTNIATYL 407
             +  IV LP  +F   T+I T L
Sbjct: 350 CNLHTIVRLPNGVFAPYTSIKTNL 373


>gi|326802758|ref|YP_004320576.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650095|gb|AEA00278.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 287

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 26/220 (11%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPF 301
           GQE+   T+ +    M++  + +D ++     ++ G TL  D  T +   F   L NPP+
Sbjct: 9   GQEINTSTYNLAKMNMMLHGVPTDHQK-----LRNGDTLDADWPTDEPTNFDIVLMNPPY 63

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +KW  DK  ++    +     +G  LP  S     FL+H    L       G   IVL 
Sbjct: 64  SQKWSADKGFLD----DPRFAAYG-VLPPKSRADFAFLLHGFYHLR----TDGTMCIVLP 114

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G   + E ++R+ +LEN  I+ ++ LP +LF+ T+I T + +L   +T      
Sbjct: 115 HGVLFRG---ASEGKLRQAMLENGYIDTVIGLPENLFYNTSIPTTIIVLKKNRTSR---D 168

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           V  I+A+  +  +    K + I+  +   +I+D Y  RE+
Sbjct: 169 VFFIDASKEFEKV----KTQNILTKEHIDKIIDTYNKRED 204


>gi|254227051|ref|ZP_04920609.1| N-6 DNA Methylase family [Vibrio cholerae V51]
 gi|125620426|gb|EAZ48802.1| N-6 DNA Methylase family [Vibrio cholerae V51]
          Length = 492

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 61/318 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L++  G +    A +F TPR VV  A    +DP            +T+YD   
Sbjct: 161 LSLVYEGLLQNMG-DAGGYAGEFYTPRPVVR-AMIKAIDPQAG---------QTIYDAAA 209

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAGMLIRRLESDPR 269
           G+ GFL +A +H+    S                G E     + + +  M++  +E    
Sbjct: 210 GSCGFLVEAFDHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMGMMNMILHGIE---- 265

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              S N+ +G+TL+   +D+    R+   L+NPPFG    K+KD +++            
Sbjct: 266 ---SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGG---KEKDQIQQ------------ 307

Query: 327 GLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             P K +   +LF+ H    L+     GG+AAIV+    LF  +  S   ++++ LLEN 
Sbjct: 308 NFPVKANATELLFMQHFMKTLK----SGGKAAIVVPEGILF--QTNSAFKQVKQELLENF 361

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRNEGKKRR 442
            +  I++LP  +F       Y  + +N    ER G       +++W        +  K +
Sbjct: 362 NLHTILSLPAGVFL-----PYSGVKTNVLFFERSG-----GTSEVWYYECEPEQKLTKNK 411

Query: 443 IINDDQRRQILDIYVSRE 460
            I DD  ++ +++Y SRE
Sbjct: 412 PITDDHLKEFVELYSSRE 429


>gi|15672633|ref|NP_266807.1| type I restriction enzyme M protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12723556|gb|AAK04749.1|AE006298_2 type I restriction enzyme M protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|3057062|gb|AAC38346.1| HsdM [Lactococcus lactis]
          Length = 515

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 148/366 (40%), Gaps = 55/366 (15%)

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELH 146
           T G  N +   E+      D+ + IF+   F S+        +A ++  + +  S  E  
Sbjct: 106 TFGHFNQQIAFEA-----KDDFEGIFDGMRFDSSDLGSNAQARASVMISMIELLSAPEFD 160

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             T  D V S+IYE+L+ +F + ++     + TP+++  +   +L       F ++    
Sbjct: 161 LSTGGDTV-SDIYEYLLEKFATVLASDMGQYYTPKEISEVMARILT------FGKADEDN 213

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            ++YDP  G+   L    +H+        I       GQE +   + +    +++  +E 
Sbjct: 214 FSIYDPAVGSASLLITTASHMKHSNQRGAIKYF----GQEKDATPYRLARMNLMMHNIEY 269

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKW---EKDKDAVEKE 315
           +  +     I    TL  D   G        + F   ++NPP+   W   +++ D   +E
Sbjct: 270 NDIQ-----IHHADTLESDWPDGVIEGKDTPRMFDAVMANPPYSAHWNNKDREDDPRFRE 324

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +          G+   +     FL+H     +      GR AI+L    LF G A   E 
Sbjct: 325 Y----------GIAPKTKADYSFLLHCLYHTK----ESGRVAIILPHGVLFRGAA---EG 367

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IR+ L++   IEA++  P  LF  T I   + IL   K       +  ++A+  +  ++
Sbjct: 368 RIRKALIDKHQIEAVIGFPDKLFLNTGIPVCVLIL---KKNRANSDILFVDASQGFEKMK 424

Query: 436 NEGKKR 441
           N+ + R
Sbjct: 425 NQKQLR 430


>gi|295401867|ref|ZP_06811831.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976121|gb|EFG51735.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 515

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 133/312 (42%), Gaps = 55/312 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   YE+ I  F +       +F TP  +V L  A+L +P   +          ++DP 
Sbjct: 166 ILGRTYEYFISSFAASEGNRGGEFFTPSSIVKLLVAML-EPKSGI----------VFDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +  +  +  +       L  +GQE    T  +    +L+  + ++      
Sbjct: 215 CGSGGMFIQSEEYAPNKHA-------LSFYGQENVVTTVRLGKMNVLLHGINAE------ 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP---GLP 329
             I+ G +L  D F   +  Y ++NPPF +K W  D+           L +  P   G  
Sbjct: 262 --IRLGDSLLNDQFPDLKADYVIANPPFNQKDWGADR-----------LSKNDPRLIGPV 308

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+ + +++ H    L    N  G A  V+++  +        E E+R+ L++   I+ 
Sbjct: 309 TNSNANYMWMQHFLYHL----NDTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDC 362

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRII 444
           IV LP  LFF T I   L+ LS  +        R+ ++  I+A  + T +    +K++ +
Sbjct: 363 IVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKAL 419

Query: 445 NDDQRRQILDIY 456
           + ++  +I  +Y
Sbjct: 420 SKEEIDKIAAVY 431


>gi|296535589|ref|ZP_06897770.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
 gi|296264105|gb|EFH10549.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
          Length = 483

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 122/272 (44%), Gaps = 41/272 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE L+ R  S+   GA  + TPR V+  A   ++DP        PG  +T+ DP 
Sbjct: 125 VKGAIYESLLERTASDTKSGAGQYFTPRPVIQ-ACVEVVDP-------RPG--QTICDPA 174

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE--THAVCVAGM-----LIRRLES 266
           CGT GFL  A  H+       K        G+ +  E  T    VAG+     +   L  
Sbjct: 175 CGTAGFLLAAFEHM-----RQKPEARDRETGRRMREEGFTGYDIVAGVARLAAMNLYLHG 229

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-----WEKDKDAVEKEHKNGEL 321
             R D++  I +   L  D   G+R+   L+NPPFG++     +  D +A E E ++ + 
Sbjct: 230 LGRADVTP-IHRADALLAD--PGRRWDVILTNPPFGRRQSIQVFTGDGEA-ETEREDYQR 285

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F        +  + F+ H+   L      GG AA+VL  + LF G  G+GE +IRR L
Sbjct: 286 PDFN---VTTGNKQLNFVQHIMTVLA----PGGVAAVVLPDNVLFEG--GAGE-KIRRRL 335

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           L+      ++ LPT +F+R  +   +     R
Sbjct: 336 LDEFECHTLLRLPTGIFYRQGVKANVLFFEAR 367


>gi|323141887|ref|ZP_08076748.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067]
 gi|322413634|gb|EFY04492.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067]
          Length = 470

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 45/293 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N+YE L+ +  +E   GA  + TPR ++ + T L+          +P       DP C
Sbjct: 122 LGNLYEGLLEKNANEKKSGAGQYFTPRVLIDVMTRLV----------APKAGERCNDPAC 171

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A N V +  +          +        G EL  +TH + +   ++     
Sbjct: 172 GTFGFMIAASNFVREQTNDFFDLDEETAEFEYTQAFTGCELVHDTHRLALMNAML----- 226

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+   I  G TLS      + +   L+NPPFG K            K GE      
Sbjct: 227 ---HDIQSKIILGDTLSNVGKEMQGYDVVLTNPPFGTK------------KGGERATRDD 271

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + FL H+   L+   +G  RAA+VL  + LF    G GE  IR  L++   
Sbjct: 272 FTYPTSNKQLNFLQHIYRSLK--ADGKARAAVVLPDNVLFAD--GDGE-RIRVDLMDKCN 326

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +  I+ LPT +F+   + T +   +  KT++   K   +   DL T++ + GK
Sbjct: 327 LHTILRLPTGIFYAQGVKTNVLFFTREKTDKDSTKA--VWFYDLRTNMPSFGK 377


>gi|53729078|ref|ZP_00348313.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126208662|ref|YP_001053887.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|126097454|gb|ABN74282.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 550

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 160/333 (48%), Gaps = 54/333 (16%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPT 213
           + I+E+LI+ + +       ++ TP  V  +  A+L+ P++       G ++ +  YDP+
Sbjct: 183 ATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILV-PENV-----RGQLQNVSCYDPS 236

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRR 270
            G+G  L +  + + +  C            + Q++ +  ++ + +  +L   + S P  
Sbjct: 237 AGSGTLLMNIAHAIGEKKC----------TIYTQDISQKSSNLLRLNLILNNLVASIP-- 284

Query: 271 DLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKW-EKDKDAVEKEHKNGELGRFG 325
               N+ QG+T++          ++F Y +SNPPF   + E  ++  E  HK     RF 
Sbjct: 285 ----NVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREELAETAHK----ARFF 336

Query: 326 PGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            G+P +           +LF+ H+ + L+      G+AA+VL +   F       + +IR
Sbjct: 337 AGVPNVPKAKKEGMKIYLLFVQHIIHSLK----ADGKAAVVLPTG--FITDQSKIDKKIR 390

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+   ++  +V++P+++F  T     +  L +R  +E    V LI+A++L   I+   
Sbjct: 391 EFLVNEKMLAGVVSMPSNIFATTGTNVSILFL-DRANQEN---VVLIDASNLGEKIKEGK 446

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
            ++ +++ ++ ++I+D++  ++  + FS ++ Y
Sbjct: 447 NQKTVLSAEEEQRIIDVFNQKKAEEDFSVVVSY 479


>gi|268599116|ref|ZP_06133283.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268583247|gb|EEZ47923.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11]
          Length = 359

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 48/315 (15%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPTCGTGG 218
           +LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP+ G+G 
Sbjct: 1   YLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDPSAGSGT 54

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L   MN VA      K         Q+             L+  L          N+ Q
Sbjct: 55  LL---MN-VAHVIGEDKCMIYTQDISQKSSNLLRLNLSLNNLVHSLN---------NVVQ 101

Query: 279 GSTL----SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           G+T+     KD     K+F + +SNPPF   +   +D +E + +N E  RF  G+PKI  
Sbjct: 102 GNTILSPYHKDASDRLKKFDFIVSNPPFKLDFSDFRDQLESD-ENRE--RFFAGIPKIKA 158

Query: 334 GS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
                     LF+ H+   L+      G+AAIVL +  +    A SG + +IR +L+EN 
Sbjct: 159 KDKDKMEIYQLFIQHILFSLK----ENGKAAIVLPTGFI---TAQSGIDKKIREYLVENK 211

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++  +V++P+++F  T   T + IL   KT   + KV LI+A+ L   I++   ++ +++
Sbjct: 212 MLAGVVSMPSNIFATT--GTNVSILFIDKT--NKDKVVLIDASGLGEKIKDGKNQKTVLS 267

Query: 446 DDQRRQILDIYVSRE 460
            ++ ++I + + +++
Sbjct: 268 CEEEQKICNTFTNKQ 282


>gi|258546308|ref|ZP_05706542.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC
           15826]
 gi|258518452|gb|EEV87311.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC
           15826]
          Length = 536

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 149/322 (46%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+        G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEAV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLEGE-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI            LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKAKDTDKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAQSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             L+EN ++  +V++P+++F  T     +  +     +  + KV LI+A+ L   I++  
Sbjct: 379 EHLVENKMLAGVVSMPSNIFATTGTNVSILFID----KANKNKVVLIDASGLGEKIKDGK 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++  + ++I + +  ++
Sbjct: 435 NQKTVLSRAEEQKICNTFTHKQ 456


>gi|237740355|ref|ZP_04570836.1| type I restriction modification system M subunit [Fusobacterium sp.
           2_1_31]
 gi|229422372|gb|EEO37419.1| type I restriction modification system M subunit [Fusobacterium sp.
           2_1_31]
          Length = 498

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 136/312 (43%), Gaps = 46/312 (14%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-V 154
            RN    +I +  ++  ++F  +   + I ++    +L         I  +P  V D+  
Sbjct: 92  VRNEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +    G   F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSGKNGQ--FRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++        A     +K     + HG + +     +    +L+  +++
Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMKT 258

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P+      +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 259 -PK------LKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLFG--ASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF 398
           +EA++++P+ +F
Sbjct: 355 LEAVISMPSGVF 366


>gi|330937291|gb|EGH41302.1| Type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 313

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLS 283
           H    GS   +P     +GQE   ET  +C+  + +  L+         NI Q  GST +
Sbjct: 12  HAKQLGSKGDLPI----YGQEKMAETRRLCLMNLAVHGLDG--------NIGQTYGSTFT 59

Query: 284 KDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            D     R  Y L+NPPF    WE +K   +         R+  G+P   + +  +L H+
Sbjct: 60  NDQHKTLRADYILANPPFNISDWEGEKLKGDP--------RWAHGIPPKGNANYAWLQHI 111

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             +L    +  GRA +VL++  +   +  SGE  IR+ ++  D++E +VALP  LF  T 
Sbjct: 112 LARL----SSRGRAGVVLANGSMSTQQ--SGEDIIRQSMVIKDVVECMVALPGQLFSNTQ 165

Query: 403 IATYLWILSNRKTEERRGKV 422
           I   LW LS  K     GK 
Sbjct: 166 IPACLWFLSKDKRIGPNGKT 185


>gi|153838493|ref|ZP_01991160.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|149748116|gb|EDM58975.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AQ3810]
          Length = 494

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 61/318 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L++  G +    A +F TPR VV  A    +DP            +T+YD   
Sbjct: 163 LSLVYEGLLQNMG-DAGGYAGEFYTPRPVVR-AMIKAIDPQAG---------QTIYDAAA 211

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAGMLIRRLESDPR 269
           G+ GFL +A +H+    S                G E     + + +  M++  +E    
Sbjct: 212 GSCGFLVEAFDHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMGMMNMILHGIE---- 267

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              S N+ +G+TL+   +D+    R+   L+NPPFG K        EKE       +   
Sbjct: 268 ---SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGK--------EKE-------QIQQ 309

Query: 327 GLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             P K +   +LF+ H    L+     GG+AA+V+    LF  +  S   ++++ LLEN 
Sbjct: 310 NFPIKANATELLFMQHFMKTLK----SGGKAAVVVPEGVLF--QTNSAFKQVKQELLENF 363

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRNEGKKRR 442
            +  I++LP  +F       Y  + +N    ER G       +D+W        +  K +
Sbjct: 364 NLHTILSLPAGVFL-----PYSGVKTNVLFFERSG-----GTSDVWYYECEPEQKLTKNK 413

Query: 443 IINDDQRRQILDIYVSRE 460
            I DD  ++ +++Y SRE
Sbjct: 414 PITDDHLKEFVELYSSRE 431


>gi|167837438|ref|ZP_02464321.1| type I restriction modification system, methyltransferase subunit
           [Burkholderia thailandensis MSMB43]
          Length = 494

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 42/277 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +  +E  +GA  + TPR+++           DA+    P    T+ DP 
Sbjct: 128 VKGDIYEGLLSKSAAESPKGAGQYFTPRELIKAIV-------DAM---QPAPSDTVCDPA 177

Query: 214 CGTGGFLTDAMNHVADCGSHH--KIPPILVPH-------GQELEPETHAVCVAGMLIRRL 264
           CGTGGFL  A+++V     H+   + P    H       G EL P T  + +  + +  +
Sbjct: 178 CGTGGFLMQAIDYV---NRHYGADLDPDQKKHLRNGFVQGGELVPATARLAIMNLYLHGV 234

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE----KDKDAVEKEHKNGE 320
           +S   +D        S  S+     +RF   L+NPPFGKK       ++  +EKE +  E
Sbjct: 235 QS---QDCPIRSGVDSLASQ---PSERFSMVLTNPPFGKKSSISVVNEEGELEKEEQAYE 288

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              F        +  + F+ H+ + L++     GRAA+VL  + LF G  G+GE+ IR+ 
Sbjct: 289 RTDF---WTTTKNKQLNFVQHIKSLLKI----HGRAAVVLPDNVLFEG--GAGET-IRKN 338

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           LL+   +  ++ LPT +F+   +   +     +  +E
Sbjct: 339 LLQQFDVHTLLRLPTGIFYAQGVKANVLFFDAKPAQE 375


>gi|212639883|ref|YP_002316403.1| type I restriction-modification system methyltransferase subunit
           [Anoxybacillus flavithermus WK1]
 gi|212561363|gb|ACJ34418.1| Type I restriction-modification system methyltransferase subunit
           [Anoxybacillus flavithermus WK1]
          Length = 515

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 133/312 (42%), Gaps = 55/312 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   YE+ I  F +       +F TP  +V L  A+L +P   +          ++DP 
Sbjct: 166 ILGRTYEYFISSFAASEGNRGGEFFTPSSIVKLLVAML-EPKSGI----------VFDPA 214

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +  +  +  +       L  +GQE    T  +    +L+  + ++      
Sbjct: 215 CGSGGMFIQSEEYAPNKHA-------LSFYGQENVVTTVRLGKMNVLLHGINAE------ 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP---GLP 329
             I+ G +L  D F   +  Y ++NPPF +K W  D+           L +  P   G  
Sbjct: 262 --IRLGDSLLNDQFPDLKADYIIANPPFNQKDWGADR-----------LSKNDPRLIGPV 308

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+ + +++ H    L    N  G A  V+++  +        E E+R+ L++   I+ 
Sbjct: 309 TNSNANYMWMQHFLYHL----NDTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDC 362

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRII 444
           IV LP  LFF T I   L+ LS  +        R+ ++  I+A  + T +    +K++ +
Sbjct: 363 IVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKAL 419

Query: 445 NDDQRRQILDIY 456
           + ++  +I  +Y
Sbjct: 420 SKEEIDKIAAVY 431


>gi|307824354|ref|ZP_07654580.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacter tundripaludum SV96]
 gi|307734734|gb|EFO05585.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacter tundripaludum SV96]
          Length = 594

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 50/268 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+R   S  + G  +F TPR V      ++          +P +   + DP 
Sbjct: 143 LFGDMYEQLLRDLQSAGNAG--EFYTPRAVTEFMVRMV----------NPRLGEKVLDPA 190

Query: 214 CGTGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL+ ++ H     V       ++   +   G E +P  H +C   M++  +    
Sbjct: 191 CGTGGFLSCSIEHIRKQDVLTVDDEARLQASIF--GIEKKPMPHLLCTTNMILHGI---- 244

Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D+  NI+  +TL++ L +    +R    ++NPPFG     ++D +E            
Sbjct: 245 --DVPSNIRHDNTLARPLISWGPKERVDVVVTNPPFGG---MEEDGIETNF--------- 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
           P   +  + + LFL+ +   L+     GGRAA+VL    LF    G G ++ I+  LLE 
Sbjct: 291 PATFRTRETADLFLVLIMQMLK----AGGRAALVLPDGFLF----GEGIKTRIKEKLLEE 342

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILS 411
             +  IV LP  +F   T I T L   S
Sbjct: 343 CNLHTIVRLPNGVFAPYTGIKTNLLFFS 370


>gi|329724457|gb|EGG60965.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 240

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 19/182 (10%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 1   IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 55

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 56  FAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 108

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 109 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQNHLSDAQVERIID 162

Query: 455 IY 456
            Y
Sbjct: 163 TY 164


>gi|323477547|gb|ADX82785.1| type 1 restriction modification enzyme, subunit m [Sulfolobus
           islandicus HVE10/4]
          Length = 586

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 154/323 (47%), Gaps = 47/323 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + Y +++ +F     +  E + TP +V+ L   L+ DP+       PG    + DP  
Sbjct: 239 IGDAYMYILAQFAPTKGKEGEVY-TPHEVIKLLIRLI-DPE-------PG--SDILDPAM 287

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  ++ +     K+       GQE  P+  A+     ++  +E++       
Sbjct: 288 GSGAMLIEAYKYIKEKNGGVKL------FGQEYNPDMAAIAKLNFILHGIENNLVE---- 337

Query: 275 NIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGL 328
            +Q G +L K  F+     +  Y ++NPP    W +D   ++++  +    ++ ++G   
Sbjct: 338 -VQIGDSLRKLKFSENSQFQVDYVVANPP----WNQDGYGEESIGNDISLRKIFKYGFTP 392

Query: 329 PKISDGSMLFLM-HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              +D + + LM + A K         +  +VL    L   R G  E  IR  ++  DLI
Sbjct: 393 NNTADWAWVQLMLYYAKK---------KVGVVLDQGAL--SREGK-ERTIRERIVNEDLI 440

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EAI+ LP  LF+ T ++  + IL+  K +ER+GK+  I+ATDL+     E +K   ++D+
Sbjct: 441 EAIILLPEKLFYNTQVSGIIMILNKEKEKERKGKILFIDATDLYIK-HPEVRKLNKLDDE 499

Query: 448 QRRQILDIYVS-RENGKFSRMLD 469
             +QI++ Y   +    FSR++D
Sbjct: 500 HIQQIVETYREFKTVLSFSRVVD 522


>gi|17231112|ref|NP_487660.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
 gi|17132753|dbj|BAB75319.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
          Length = 484

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 45/252 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           +  S IYE +++   S  + G  ++ TPR V    T  ++D      +  P +   ++DP
Sbjct: 141 KQFSEIYEKILKDLQSAGNAG--EYYTPRAV----TKFIVD------RIKPQLGEIVFDP 188

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A++++        +P IL     G E +P  + +C+  +++  ++     
Sbjct: 189 ACGTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPYNLCITNLILHGID----- 243

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +  +TL+   +D    +R    ++NPPFG   E   D +E            P 
Sbjct: 244 --VPEAEHDNTLARPLRDYSPHERVDVIITNPPFGGMEE---DGIEDNF---------PA 289

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL+ +A+ L+     GGR AIVL    LF    G G ++ I+  LL++  
Sbjct: 290 TFRTRETADLFLVLIAHLLK----EGGRGAIVLPDGTLF----GEGVKTRIKEKLLQDCN 341

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 342 LHTIVRLPNGVF 353


>gi|168749491|ref|ZP_02774513.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|195937622|ref|ZP_03083004.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|261226706|ref|ZP_05940987.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256909|ref|ZP_05949442.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. FRIK966]
 gi|188016186|gb|EDU54308.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|320190534|gb|EFW65184.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. EC1212]
 gi|320638730|gb|EFX08388.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320649760|gb|EFX18284.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320654810|gb|EFX22779.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660662|gb|EFX28123.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|326346809|gb|EGD70543.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. 1044]
          Length = 489

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|24115564|ref|NP_710074.1| putative restriction modification enzyme M subunit (methylase)
           [Shigella flexneri 2a str. 301]
 gi|24054895|gb|AAN45781.1| putative restriction modification enzyme M subunit (methylase)
           [Shigella flexneri 2a str. 301]
          Length = 501

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 102 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 160

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 161 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 208

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 209 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 260

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 308

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 309 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 360

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 361 LPNGVF 366


>gi|227885168|ref|ZP_04002973.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300980748|ref|ZP_07175163.1| N-6 DNA Methylase [Escherichia coli MS 45-1]
 gi|301048309|ref|ZP_07195340.1| N-6 DNA Methylase [Escherichia coli MS 185-1]
 gi|227837997|gb|EEJ48463.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300299817|gb|EFJ56202.1| N-6 DNA Methylase [Escherichia coli MS 185-1]
 gi|300409163|gb|EFJ92701.1| N-6 DNA Methylase [Escherichia coli MS 45-1]
 gi|307556580|gb|ADN49355.1| type I restriction-modification system, M subunit [Escherichia coli
           ABU 83972]
 gi|315293300|gb|EFU52652.1| N-6 DNA Methylase [Escherichia coli MS 153-1]
          Length = 501

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 102 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 160

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 161 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 208

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 209 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 260

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 308

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 309 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 360

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 361 LPNGVF 366


>gi|218698187|ref|YP_002405854.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli 55989]
 gi|218703040|ref|YP_002410669.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli IAI39]
 gi|300815958|ref|ZP_07096181.1| N-6 DNA Methylase [Escherichia coli MS 107-1]
 gi|218354919|emb|CAV02127.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli 55989]
 gi|218373026|emb|CAR20915.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli IAI39]
 gi|281603674|gb|ADA76658.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 2002017]
 gi|300531165|gb|EFK52227.1| N-6 DNA Methylase [Escherichia coli MS 107-1]
 gi|324005095|gb|EGB74314.1| N-6 DNA Methylase [Escherichia coli MS 57-2]
          Length = 501

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 102 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 160

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 161 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 208

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 209 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 260

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 308

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 309 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 360

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 361 LPNGVF 366


>gi|313681903|ref|YP_004059641.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154763|gb|ADR33441.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 478

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 134/303 (44%), Gaps = 49/303 (16%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162
           +A  + N +AI     F      ++   ++ ++    +  E++ ++  DR M  +IYE +
Sbjct: 95  LALGTTNKRAILVREVFEGNNNYMKSGTIIRQVINKLN--EVNFNSSEDRHMFGDIYETI 152

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++   S    G  +F TPR + +  T           +  P +   ++DP CGTGGFLT 
Sbjct: 153 LKELQSAGDSG--EFYTPRAITNFITD----------RVDPKLGEIVFDPACGTGGFLTS 200

Query: 223 AMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           A+ H+      +    + +     G EL+P  H + +  +++  +E         NI+  
Sbjct: 201 AIEHIRQKEVKNIDDRLTLQKSIKGVELKPLPHMLALTNLVLHDIE-------VPNIEYD 253

Query: 280 STLSKDL--FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             LSK+L   T K R    L+NPPFG       D +E            P + +  + + 
Sbjct: 254 DALSKELSSITQKDRVDVILANPPFGGNV---TDGMEMNF---------PMIYRTKESAD 301

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPT 395
           LFL+ +   L+     GGRA IVL    L     G G ++ IR+ LLE+  +  I+ LP 
Sbjct: 302 LFLILIIQYLK----DGGRAGIVLPDGSL----TGEGVKARIRQKLLEDCNLHTIIRLPN 353

Query: 396 DLF 398
            +F
Sbjct: 354 SVF 356


>gi|297207477|ref|ZP_06923913.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887813|gb|EFH26710.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 266

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 19/182 (10%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G    +G   PK S   
Sbjct: 27  IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSG----YGKLAPK-SKAD 81

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+ E + +EA++ LP
Sbjct: 82  FAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 134

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK +  ++D Q  +I+D
Sbjct: 135 ANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDFE----KGKNQNHLSDAQVERIID 188

Query: 455 IY 456
            Y
Sbjct: 189 TY 190


>gi|320644442|gb|EFX13507.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H- str. 493-89]
          Length = 489

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|15804921|ref|NP_290963.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 EDL933]
 gi|15834561|ref|NP_313334.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187775912|ref|ZP_02798948.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|189010373|ref|ZP_02806644.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402076|ref|ZP_02779925.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189402859|ref|ZP_02791636.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189403850|ref|ZP_02785602.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189404614|ref|ZP_02809998.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189405571|ref|ZP_02822927.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208808458|ref|ZP_03250795.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811917|ref|ZP_03253246.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821806|ref|ZP_03262126.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398363|ref|YP_002273871.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324963|ref|ZP_03441047.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796346|ref|YP_003081183.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. TW14359]
 gi|291285728|ref|YP_003502546.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|12519367|gb|AAG59530.1|AE005666_2 putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364785|dbj|BAB38730.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770320|gb|EDU34164.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|189000682|gb|EDU69668.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357931|gb|EDU76350.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364319|gb|EDU82738.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368976|gb|EDU87392.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374878|gb|EDU93294.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189379424|gb|EDU97840.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208728259|gb|EDZ77860.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733194|gb|EDZ81881.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741929|gb|EDZ89611.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159763|gb|ACI37196.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217321184|gb|EEC29608.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595746|gb|ACT75107.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. TW14359]
 gi|290765601|gb|ADD59562.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|326345337|gb|EGD69080.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. 1125]
          Length = 493

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|254167129|ref|ZP_04873982.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|197623985|gb|EDY36547.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
          Length = 573

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 141/308 (45%), Gaps = 44/308 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + Y  ++  F  + ++  E++ TP+++V L   LL D  +           T+ DP 
Sbjct: 231 VIGDAYMWILNYFAPQKAKEGENY-TPQEIVKLLVNLL-DIQNG---------STVLDPA 279

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L ++  +V D     +    ++ +GQE       V    +++  +++       
Sbjct: 280 LGSGSMLIESWMYVRDNNKEAE----MMLYGQERNEIMGIVAKMNLILHDIKN------- 328

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            +I  G +L+   F  +   Y ++NPP+  K+  +    +   K       G G P  S 
Sbjct: 329 YDIYIGDSLANPRF--QSCDYVIANPPWNLKYNVNALKQDPRVKKIYTTFVGNGFP--SK 384

Query: 334 GSM-----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SM       +++ +NK         +  I+L +  LF G     E +IR  +++ DLIE
Sbjct: 385 NSMDWAWIQLMLYFSNK---------KVGIILDNGALFRG---GKEKKIREGIVKKDLIE 432

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP  LF+ T+ A  + I +  K E+R+ KV +INA++ +     E ++   + D+ 
Sbjct: 433 AVILLPEKLFYNTSAAGAVIIFNKNKPEDRKRKVIIINASNEYEK-HPEVRRLNKLGDEH 491

Query: 449 RRQILDIY 456
            ++I+  Y
Sbjct: 492 IKKIVKAY 499


>gi|332749354|gb|EGJ79775.1| hypothetical protein SF434370_4721 [Shigella flexneri 4343-70]
 gi|332768711|gb|EGJ98890.1| hypothetical protein SF293071_0006 [Shigella flexneri 2930-71]
          Length = 476

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+         +  +IY
Sbjct: 77  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDF-TSASERHLFGDIY 135

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 136 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 183

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 184 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 235

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 236 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 283

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 284 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 335

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 336 LPNGVF 341


>gi|298248251|ref|ZP_06972056.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
 gi|297550910|gb|EFH84776.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 68/323 (21%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           EK G+L +       I  +  +  + +M +I+E+L+    +    G   F TPR ++   
Sbjct: 167 EKGGMLERALIQVDNIFKYIGSANEDIMGDIFEYLLSEIEASGKNGQ--FRTPRHIIRFM 224

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----------CGSHHKI 236
             LL    D  F E       + DP  G+GGFL +++ HV              G+ H+I
Sbjct: 225 IELL----DPQFNE------LICDPAAGSGGFLINSIQHVLKKYSEDTVIYEWNGTPHRI 274

Query: 237 ---PPILVP-----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              PP   P      G + +     +    M++  +E +PR  L         LS+ +  
Sbjct: 275 YGVPPKPYPTPESCTGYDNDRTMVRIGWMNMILHGIE-NPRMILR------DALSQRMED 327

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK--------ISDGS-MLFL 339
             R+   L+NPPF  +               ++G   P LP+        I+D S +LFL
Sbjct: 328 QDRYDVVLANPPFAGQ--------------VDVGDVHPDLPRHPNNRHRPITDKSDLLFL 373

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 L+     GGRAA++L    LF   + +   E+RR LL  ++++ +++LP  +F 
Sbjct: 374 WQTLRILK----NGGRAAVILPEGVLFG--STNAHKELRRQLLLENIVDGVISLPAGVFS 427

Query: 400 -RTNIATYLWILSNRKTEERRGK 421
             T + T + I    K E R G+
Sbjct: 428 PYTGVKTSILIFHKHKGEYRAGQ 450


>gi|110644784|ref|YP_672514.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536]
 gi|110346376|gb|ABG72613.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536]
          Length = 501

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 102 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 160

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 161 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRID------PKLGESIMDPACGTGGF 208

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 209 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 260

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 308

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 309 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 360

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 361 LPNGVF 366


>gi|300992648|ref|ZP_07179962.1| N-6 DNA Methylase [Escherichia coli MS 200-1]
 gi|52420940|emb|CAH55819.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli]
 gi|300305269|gb|EFJ59789.1| N-6 DNA Methylase [Escherichia coli MS 200-1]
 gi|324014075|gb|EGB83294.1| N-6 DNA Methylase [Escherichia coli MS 60-1]
          Length = 501

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 102 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 160

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 161 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRID------PKLGESIMDPACGTGGF 208

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 209 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 260

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 308

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 309 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 360

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 361 LPNGVF 366


>gi|313113033|ref|ZP_07798671.1| type I restriction-modification system, M subunit [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624647|gb|EFQ07964.1| type I restriction-modification system, M subunit [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 848

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 66/335 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI  F +   + A +F TP +V  L + ++     A   +    I+ +YDPT
Sbjct: 164 VLGFIYEYLISNFAANAGKKAGEFYTPHEVSLLMSEIV-----AYHLKDREEIK-IYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G+G  L     ++  C + +      + +  QEL+  T+ +    +++R +       L
Sbjct: 218 SGSGSLLI----NIGQCAARYMGNGNNIKYYAQELKENTYNLTRMNLVMRGI-------L 266

Query: 273 SKNI--QQGSTLSKD---------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             NI  + G TL +D               LF        +SNPP+ + W  +    +KE
Sbjct: 267 PDNIVTRNGDTLEEDWPYFEENDPVNTYDPLFVDA----VVSNPPYSQAWNPN----DKE 318

Query: 316 HKNGELGRFGPGLPKISDGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           + N     +G      +D + L   L H+ N         G   IVL    LF G     
Sbjct: 319 N-NPRFSDYGLAPKGKADYAFLLHDLYHIRN--------DGIVTIVLPHGVLFRG---GE 366

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E  IR+ L++++ I+AI+ LP ++FF T I T + +L   K   +   V +I+A+     
Sbjct: 367 EGTIRKNLIDHNNIDAIIGLPANIFFGTGIPTIIMVLRKNK---KDSDVLIIDAS---KG 420

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENG--KFSR 466
              +GK  ++   D +R I+D Y  R     KF+R
Sbjct: 421 FEKDGKNNKLRACDIKR-IVDAYKERPEKIEKFAR 454


>gi|320665589|gb|EFX32635.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 489

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|194435169|ref|ZP_03067401.1| type I restriction-modification system, M subunit [Shigella
           dysenteriae 1012]
 gi|194416587|gb|EDX32724.1| type I restriction-modification system, M subunit [Shigella
           dysenteriae 1012]
 gi|320179361|gb|EFW54319.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella boydii ATCC 9905]
          Length = 493

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|83943083|ref|ZP_00955543.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp.
           EE-36]
 gi|83846091|gb|EAP83968.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 118/283 (41%), Gaps = 46/283 (16%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  +    + IE H D   DR    IYE LI +   +V  GA  + TPR +V+    ++ 
Sbjct: 103 LRAVIDGITEIEWH-DLSDDR-FGQIYEGLIEKSSQDVRSGAGQYFTPRPLVNSMVKVM- 159

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEP 249
                     P +   + DP  G+GGFL  A   +    S   + K PP     G E+E 
Sbjct: 160 ---------RPRLGEMIQDPAAGSGGFLIAADQFIRSGNSDSAYSKNPPKY--QGAEIEK 208

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +C+    +  L+++        +  G  L+ D    +  +  L+NPPFG       
Sbjct: 209 NTRRICLMNTFLNGLDAE--------VFYGDALTDDGAGFQSANLVLANPPFG------- 253

Query: 310 DAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 +K G   +    +P   ++  + FL H+   LE     GGRAA+VL  + LF  
Sbjct: 254 ------NKAGSRRKLRADIPYPNANKQLAFLQHIYLCLET----GGRAAVVLPDNALFEE 303

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G     +RR L+E+  +  ++ LP  +F    + T +   S
Sbjct: 304 GVG---KLVRRDLMESCNLHTVLRLPKGIFSSAGVKTNVLFFS 343


>gi|157159201|ref|YP_001463944.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157081231|gb|ABV20939.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 515

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 136/314 (43%), Gaps = 41/314 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ +V L   +L           P   R ++DP 
Sbjct: 159 VLGHVFEYFLGEFALAEGKQGGQFYTPKSIVSLLVNML----------EPYKGR-VFDPC 207

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    +H      +  +GQE    T  +    + IR + S+  R   
Sbjct: 208 CGSGGMFVQSEKFVE---AHQGNIDDISIYGQESNQTTWRLAKMNLAIRGINSEHVR--- 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
               +GS L+ D     +  + ++NPPF    W         E   G+  R+  G+P   
Sbjct: 262 -WNNEGSFLN-DAHKDLKSDFIIANPPFNVSDWSG-------EQLRGD-ARWQYGIPPAG 311

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
           + +  ++ H      L P G  +A +VL+   L +    SGE +IR  L+++ ++I+ IV
Sbjct: 312 NANFAWMQHFL--YHLSPKG--QAGVVLAKGALTS--KSSGEGDIRAALVKDANVIDCIV 365

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDD 447
            LP  LF  T I   LW +  R+  E     +  +   L+   RN G    ++ ++++D+
Sbjct: 366 NLPAKLFLNTQIPAALWFM--RRDRENSSHYRDRSKEILFIDARNLGHLINRRSKVLSDE 423

Query: 448 QRRQILDIYVSREN 461
             + I D Y +  N
Sbjct: 424 DIKTIADTYHNWRN 437


>gi|15964352|ref|NP_384705.1| putative modification enzyme transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15073529|emb|CAC45171.1| Putative modification enzyme transmembrane protein [Sinorhizobium
           meliloti 1021]
          Length = 526

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 129/303 (42%), Gaps = 43/303 (14%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL P  +      ++YE+ +  F  E  +   +F TP  +V L   ++           P
Sbjct: 135 ELQPLKISGDAFGHVYEYFMGNFAKETMQKGGEFYTPSSIVRLIVEII----------EP 184

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHGQELEPET-----HAVCV 256
              R L DP CG+GG       H AD    H+  P   L  +G E   ET       + V
Sbjct: 185 YHGRIL-DPACGSGGMFV----HSADFVKRHQREPDKELSIYGVERTRETWRLAQMNLAV 239

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGK-RFHYCLSNPPFGKKWEKDKDAV 312
            G+  + L++D  RD    + +  T  KD    + G   F + ++NPPF  K E DK  +
Sbjct: 240 HGLSGKILDADTYRD---PVFEEVTPKKDKDGRYEGSGGFDFVMANPPFNVK-ELDKSKL 295

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                     RF  G+P   + + L++    ++L    N  GRA  V+++S      A  
Sbjct: 296 LDVAN-----RFPFGVPSADNANYLWIQFFWSRL----NETGRAGFVMANSA---ADARG 343

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDLW 431
            E EIRR L+E+  ++ IV++  + F    +   LW     K T  R  +V  ++A  ++
Sbjct: 344 TEQEIRRKLIESGSVDVIVSVGPNFFLTVTLPCTLWFFDKGKATGPRADEVLFLDARHIF 403

Query: 432 TSI 434
             I
Sbjct: 404 RQI 406


>gi|293408035|ref|ZP_06651875.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354]
 gi|291472286|gb|EFF14768.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354]
          Length = 493

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|26251230|ref|NP_757270.1| putative restriction modification enzyme M subunit [Escherichia
           coli CFT073]
 gi|26111663|gb|AAN83844.1|AE016772_22 Putative restriction modification enzyme M subunit [Escherichia
           coli CFT073]
          Length = 507

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 108 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 166

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 167 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 214

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 215 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 266

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 267 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 314

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 315 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 366

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 367 LPNGVF 372


>gi|13357655|ref|NP_077929.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170762197|ref|YP_001752181.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|183508500|ref|ZP_02689853.2| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|11357066|pir||E82933 type I restriction enzyme M protein, truncated homolog UU098
           [imported] - Ureaplasma urealyticum
 gi|6899053|gb|AAF30504.1|AE002110_2 type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827774|gb|ACA33036.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|182675928|gb|EDT87833.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 348

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 137/312 (43%), Gaps = 30/312 (9%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + +   +   +F TP++V  L   L L   +   K+    I  +YDP CG+G 
Sbjct: 6   YEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDPCCGSGS 65

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L            + K+   +  +GQE+   T+ +    M +  +  D       +I+ 
Sbjct: 66  LLL----------KYAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDKF-----DIKL 110

Query: 279 GSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G TL        K F   +SNPP+  KWE   + +    +   + +  P           
Sbjct: 111 GDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLANDERFHVTQLAPK----GKADFA 166

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTD 396
           F++H+ + L    +  G AAIV+    L+   A   E +IR++L    +++++++ LP +
Sbjct: 167 FVLHILHNL----SSSGTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDSVIQLPDN 219

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I+T + +L  RK +        I   D        G K ++ N + ++ +  I 
Sbjct: 220 LFFGTSISTCIIVL--RKNKNNNDNANGILFVDASKEFVKSGIKNKLTNANIKKIVDTIR 277

Query: 457 VSRENGKFSRML 468
             +E   FS+++
Sbjct: 278 FKKEVTYFSKLV 289


>gi|260438000|ref|ZP_05791816.1| type I restriction-modification system, M subunit [Butyrivibrio
           crossotus DSM 2876]
 gi|292809479|gb|EFF68684.1| type I restriction-modification system, M subunit [Butyrivibrio
           crossotus DSM 2876]
          Length = 475

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 42/301 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++ + G +   GA  + TPR ++      ++D  D      P +  T+ DP CGT 
Sbjct: 133 IYESILEKNGQDKKSGAGQYFTPRALIQA----MVDVTD------PQITETVADPACGTA 182

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           GFL  A  H+     +      L  +       T  V     +   L  D     S  + 
Sbjct: 183 GFLLAAYEHMKKQAKNSNQLTNLKNNALFGADNTPLVVTLASMNLYLH-DIGTHTSPIVC 241

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           Q S L     + K +   L+NPPFG +             +GE+        K SD  + 
Sbjct: 242 QDSLLDT---SDKMYDVILANPPFGTR----------PQGSGEVSAVRSDFIKTSDNQVN 288

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL H+ + ++     GGR A+VL  + L +G A    +++R  LL++  +  I+ LPT +
Sbjct: 289 FLQHIMSIVKT----GGRVAVVLPDNVLTDGNA---TAKVREKLLKDFNLHTILRLPTGI 341

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+   + T +         E           D+W      G K  ++     R+ LD +V
Sbjct: 342 FYANGVKTNVLFFEKGSPTE-----------DIWVYDYRIGIKHTLVQKPLTREHLDDFV 390

Query: 458 S 458
           S
Sbjct: 391 S 391


>gi|188492484|ref|ZP_02999754.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|188487683|gb|EDU62786.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
          Length = 489

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|110808125|ref|YP_691645.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 5 str. 8401]
 gi|110617673|gb|ABF06340.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 5 str. 8401]
          Length = 496

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 97  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 155

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 156 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 203

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 204 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 255

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 256 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 304 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 355

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 356 LPNGVF 361


>gi|333010422|gb|EGK29855.1| hypothetical protein SFVA6_0215 [Shigella flexneri VA-6]
          Length = 486

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|331666164|ref|ZP_08367045.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli TA271]
 gi|331066375|gb|EGI38252.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli TA271]
          Length = 489

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|218692732|ref|YP_002400944.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli ED1a]
 gi|218430296|emb|CAV18172.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli ED1a]
          Length = 501

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 102 LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 160

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 161 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 208

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 209 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 260

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 308

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 309 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 360

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 361 LPNGVF 366


>gi|26991424|ref|NP_746849.1| type I restriction-modification system, M subunit [Pseudomonas
           putida KT2440]
 gi|24986496|gb|AAN70313.1|AE016672_4 type I restriction-modification system, M subunit [Pseudomonas
           putida KT2440]
          Length = 489

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 49/251 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N+YE L+R   +  + G  +F TPR V      ++           P +   + DP CGT
Sbjct: 146 NLYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLAEKVMDPACGT 193

Query: 217 GGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GGFLT A+ H     V        +   +   G E +P  H +    M++  +E      
Sbjct: 194 GGFLTCAIEHKRRRYVKTAEDERTLQASIF--GVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLSK L +    +R H  ++NPPFG     ++D +E            P  
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNF---------PAA 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
            +  + + LFL+ +   L+     GGRAA+VL    LF    G G +S I+  LL    +
Sbjct: 294 FRTRETADLFLVLIMQLLK----DGGRAAVVLPDGFLF----GEGIKSRIKEKLLTECNL 345

Query: 388 EAIVALPTDLF 398
             IV LP  +F
Sbjct: 346 HTIVRLPNGVF 356


>gi|331000343|ref|ZP_08324024.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
 gi|329572139|gb|EGG53804.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
          Length = 701

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 129/298 (43%), Gaps = 45/298 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI +F S   + A +F TP +V  L   ++        K+   +  ++YDPT
Sbjct: 7   VLGFIYEYLIGQFASSAGKKAGEFYTPHEVSELMAEIVAYS----LKDRERI--SVYDPT 60

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP----- 268
            G+G  L      +   G   K    +    QE+   T+ +    +++R +  D      
Sbjct: 61  SGSGSLLITIGKAIEKQG---KSTDSIRYFAQEIIEATYNLIRMNLVMRGIIRDNISTSN 117

Query: 269 ----RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
               R D  +N  +   L  D          +SNPP+  KW  D  A +   +N      
Sbjct: 118 NDTLRNDWPRNTLKDEPLLVDA--------VVSNPPYSLKWNPDGMAADPRFQNY----- 164

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE-IRRWLLE 383
             GL   S     FL+H    L+      G   IVL    LF G    GE E IR  LL+
Sbjct: 165 --GLAPKSAADFAFLLHDLYHLKY----DGILTIVLPHGVLFRG----GEEERIRTQLLK 214

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            + I+A++ LP ++FF T I T + +L  RK+ E++  V  I+A+  +  +  + K R
Sbjct: 215 LNQIDAVIGLPPNIFFGTGIPTIIMVL--RKSREQKD-VLFIDASKGFEKVTAKNKLR 269


>gi|313646314|gb|EFS10776.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332749087|gb|EGJ79510.1| hypothetical protein SFK671_5131 [Shigella flexneri K-671]
 gi|332749700|gb|EGJ80116.1| hypothetical protein SF274771_5150 [Shigella flexneri 2747-71]
 gi|333009052|gb|EGK28508.1| hypothetical protein SFK218_0156 [Shigella flexneri K-218]
 gi|333022253|gb|EGK41491.1| hypothetical protein SFK304_0030 [Shigella flexneri K-304]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|333011301|gb|EGK30715.1| hypothetical protein SFK272_0256 [Shigella flexneri K-272]
 gi|333012197|gb|EGK31579.1| hypothetical protein SFK227_5291 [Shigella flexneri K-227]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|222036089|emb|CAP78834.1| restriction modification enzyme Msubunit [Escherichia coli LF82]
 gi|312948975|gb|ADR29802.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRID------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|17230967|ref|NP_487515.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
 gi|17132608|dbj|BAB75174.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
          Length = 480

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 45/252 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           +  S IYE +++   S  + G  ++ TPR V    T  ++D      +  P +   ++DP
Sbjct: 141 KQFSEIYEKILKDLQSAGNAG--EYYTPRAV----TKFIVD------RIKPQLGEIVFDP 188

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A++++        +P IL     G E +P    +CV  +++  ++     
Sbjct: 189 ACGTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILNGID----- 243

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               + +  +TL+   +D    +R    ++NPPFG     ++D +E            P 
Sbjct: 244 --VPSAEHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PA 289

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL+ +A+ L+     GGR AIVL    LF    G G ++ I+  LL++  
Sbjct: 290 TFRTRETADLFLVLIAHLLK----EGGRGAIVLPDGTLF----GEGVKTRIKEKLLQDCN 341

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 342 LHTIVRLPNGVF 353


>gi|313500655|gb|ADR62021.1| HsdM [Pseudomonas putida BIRD-1]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 49/251 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N+YE L+R   +  + G  +F TPR V      ++           P +   + DP CGT
Sbjct: 146 NLYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLAEKVMDPACGT 193

Query: 217 GGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GGFLT A+ H     V        +   +   G E +P  H +    M++  +E      
Sbjct: 194 GGFLTCAIEHKRSRYVKTAEDERTLQASIF--GVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLSK L +    +R H  ++NPPFG     ++D +E            P  
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNF---------PAA 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
            +  + + LFL+ +   L+     GGRAA+VL    LF    G G +S I+  LL    +
Sbjct: 294 FRTRETADLFLVLIMQLLK----DGGRAAVVLPDGFLF----GEGIKSRIKEKLLTECNL 345

Query: 388 EAIVALPTDLF 398
             IV LP  +F
Sbjct: 346 HTIVRLPNGVF 356


>gi|191170740|ref|ZP_03032292.1| type I restriction-modification system, M subunit [Escherichia coli
           F11]
 gi|190908964|gb|EDV68551.1| type I restriction-modification system, M subunit [Escherichia coli
           F11]
          Length = 493

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRID------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|332083324|gb|EGI88555.1| hypothetical protein SB521682_5204 [Shigella boydii 5216-82]
 gi|332083825|gb|EGI89043.1| hypothetical protein SD15574_5337 [Shigella dysenteriae 155-74]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|146396|gb|AAA23984.1| restriction-modification enzyme type I M subunit [Escherichia coli]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNKYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|291086066|ref|ZP_06354740.2| type I restriction-modification system, M subunit [Citrobacter
           youngae ATCC 29220]
 gi|291069286|gb|EFE07395.1| type I restriction-modification system, M subunit [Citrobacter
           youngae ATCC 29220]
          Length = 493

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+         +  +IY
Sbjct: 94  LKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDF-TSASERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNNYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|201067988|ref|ZP_03217840.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004432|gb|EDZ04944.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 140

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 6/129 (4%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           + NFIW  A+DL  D +    +  VILP T++RR++  LEPT+  V + Y  +     +L
Sbjct: 9   IVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENL 68

Query: 70  ESFV---KVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ES +   +     F+N S+++L TL +   N R N E+Y+  FS+N K I   F F + +
Sbjct: 69  ESLLGGKQGNNLGFFNYSQFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQL 128

Query: 125 ARLEKAGLL 133
             LE++ +L
Sbjct: 129 DTLEESNIL 137


>gi|325498693|gb|EGC96552.1| type I restriction-modification system, M subunit [Escherichia
           fergusonii ECD227]
          Length = 493

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNKYVKSIADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|322615695|gb|EFY12615.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618756|gb|EFY15645.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322621830|gb|EFY18680.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627555|gb|EFY24346.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630862|gb|EFY27626.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637920|gb|EFY34621.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322643846|gb|EFY40394.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651075|gb|EFY47460.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656669|gb|EFY52957.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659906|gb|EFY56149.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322661885|gb|EFY58101.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666369|gb|EFY62547.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672788|gb|EFY68899.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676217|gb|EFY72288.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680702|gb|EFY76740.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684404|gb|EFY80408.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323194258|gb|EFZ79455.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197405|gb|EFZ82545.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201478|gb|EFZ86542.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205992|gb|EFZ90954.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213004|gb|EFZ97806.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215377|gb|EGA00121.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223293|gb|EGA07630.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226180|gb|EGA10397.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228833|gb|EGA12962.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236556|gb|EGA20632.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239944|gb|EGA23991.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242009|gb|EGA26038.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247843|gb|EGA31780.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251517|gb|EGA35388.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258116|gb|EGA41793.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263741|gb|EGA47262.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265665|gb|EGA49161.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270110|gb|EGA53558.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 489

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+         +  +IY
Sbjct: 90  LKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDF-TSASERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNNYVQSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIVEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|167917015|ref|ZP_02504106.1| N-6 DNA methylase [Burkholderia pseudomallei BCC215]
          Length = 485

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 154/367 (41%), Gaps = 64/367 (17%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNL 100
           ++LE   +  RS +  K L +     D E     A  +F NT  +  L  L  T    N 
Sbjct: 44  QQLEVMQDGYRSPI-PKALQWRTWAADPEGITGDALIAFINTELFPQLKELPVTGKNANR 102

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
              +       + +FED         ++   L+ ++    SG++ + D    +   +IYE
Sbjct: 103 SRVV-------RGVFED-----AYNYMKSGQLMRQVVNKISGVDFN-DLAERKHFGDIYE 149

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+    S  + G  ++ TPR V    TA ++D  D      PG I  L+DP+ GTGGFL
Sbjct: 150 QLLNDLQSAGNAG--EYYTPRAV----TAFMVDRIDP----KPGEI--LFDPSVGTGGFL 197

Query: 221 TDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           T ++ H+ D           +   L    ++  P  H +CV  ML+  +E DP       
Sbjct: 198 TCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLP--HMLCVTNMLLHGIE-DP-----SF 249

Query: 276 IQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           ++  +TL++   +     R    L+NPPFG K E   D +E            P   +  
Sbjct: 250 VRHDNTLARPYISYGQADRVDIILTNPPFGGKEE---DGIESNF---------PAHLRTK 297

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIV 391
           + + LFL      L+     GGRA IVL    LF    G G ++ ++  LLE   +  IV
Sbjct: 298 ETADLFLALFIRLLK----PGGRAGIVLPDGSLF----GEGVKTRLKAQLLEECNLHTIV 349

Query: 392 ALPTDLF 398
            LP  +F
Sbjct: 350 RLPNSVF 356


>gi|46143840|ref|ZP_00133970.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 252

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 22/185 (11%)

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G TL K  F   K F   +SNPP+  KW  D D      +     RF P   L   
Sbjct: 14  DITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPTLINDE-----RFAPAGVLAPK 68

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++
Sbjct: 69  SKADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVI 121

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +
Sbjct: 122 SLAPNLFFGTSIAVNILVLSKNKTD---SKTQFIDASGIFKKETN----NNVLTDEHIAE 174

Query: 452 ILDIY 456
           IL ++
Sbjct: 175 ILKLF 179


>gi|75909478|ref|YP_323774.1| putative RNA methylase [Anabaena variabilis ATCC 29413]
 gi|75703203|gb|ABA22879.1| Putative RNA methylase [Anabaena variabilis ATCC 29413]
          Length = 479

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 45/252 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           +  S IYE +++   S  + G  ++ TPR V    T  ++D      +  P +   ++DP
Sbjct: 141 KQFSEIYEKILKDLQSAGNAG--EYYTPRAV----TKFIVD------RIKPQLGEIVFDP 188

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A++++        +P IL     G E +P    +CV  +++  ++     
Sbjct: 189 ACGTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILHGID----- 243

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               + +  +TL+   +D    +R    ++NPPFG     ++D +E            P 
Sbjct: 244 --VPSAEHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PA 289

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL+ +A+ L+     GGR AIVL    LF    G G ++ I+  LL++  
Sbjct: 290 TFRTRETADLFLVLIAHLLK----EGGRGAIVLPDGTLF----GEGVKTRIKEKLLQDCN 341

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 342 LHTIVRLPNGVF 353


>gi|330879393|gb|EGH13542.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 489

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 108/252 (42%), Gaps = 49/252 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N+YE L+R   +  + G  +F TPR V      ++           P +   + DP CG
Sbjct: 145 GNLYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLDEKVMDPACG 192

Query: 216 TGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           TGGFLT A+ H     V        +   +   G E +P  H +    M++  +E     
Sbjct: 193 TGGFLTCAIEHKRSRYVKTAEDERTLQASIF--GVEKKPLPHLLATTNMILHGIE----- 245

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TLSK L +    +R H  ++NPPFG     ++D +E         R    
Sbjct: 246 -VPSQIKHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNFPAAFRTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL    
Sbjct: 298 --ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GDGIKSRIKEKLLTECN 344

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 345 LHTIVRLPKGVF 356


>gi|300718521|ref|YP_003743324.1| type I restriction enzyme EcoEI M protein [Erwinia billingiae
           Eb661]
 gi|299064357|emb|CAX61477.1| Type I restriction enzyme EcoEI M protein [Erwinia billingiae
           Eb661]
          Length = 490

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 51/315 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L+S IA    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 90  LKSMIAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFSSSS-ERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R   +  + G  +F TPR V       +           P +  ++ DP CGTGGF
Sbjct: 149 EQILRDLQNAGNAG--EFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           L  + +HV +        HK     +  G E +   H +C   ML+  +E      +   
Sbjct: 197 LACSFDHVKEHYVKTTEDHKTLQKQI-FGVEKKQLPHLLCTTNMLLHGIE------VPVQ 249

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  + 
Sbjct: 250 IRHDNTLNKPLSSWDEQVDVFVTNPPFGG---TEEDGIEKNF---------PAEMQTRET 297

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVAL 393
           + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV L
Sbjct: 298 ADLFLQLIIEVLA----DKGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF-----FRTNI 403
           P  +F      +TNI
Sbjct: 350 PNGVFNPYTGIKTNI 364


>gi|189463332|ref|ZP_03012117.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136]
 gi|189429951|gb|EDU98935.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136]
          Length = 477

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 120/272 (44%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIKAMVDCI----------APQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++ D  ++ +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKDQSANKEKRDFLRNKALHGVDNTPLVVTLASMNLYLHGVGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
           +  I+ LPT +F+   + A  L+    + T+E
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFTKGQPTKE 361


>gi|1841495|emb|CAA71895.1| StySKI methylase [Salmonella enterica]
          Length = 493

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 132/306 (43%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+    +    +  +IY
Sbjct: 94  LKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFTSAS-ERHLFGDIY 152

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 153 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 200

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 201 LACAFDHVKNNYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 300

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 301 TADLFLQLIIEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 352

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 353 LPNGVF 358


>gi|117923445|ref|YP_864062.1| type I restriction-modification system, M subunit [Magnetococcus
           sp. MC-1]
 gi|117607201|gb|ABK42656.1| type I restriction-modification system, M subunit [Magnetococcus
           sp. MC-1]
          Length = 537

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 202/505 (40%), Gaps = 82/505 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL----ECA----LEPTRSAVREK-- 58
           + L   +W  A+DL G     DF   +L F  LR L    E A    L P    ++E   
Sbjct: 7   SQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDYPKLQEDDR 66

Query: 59  -------YLAFGGSNIDLESFVKVAGY----------SFYNTSEYSLSTLGSTNTRNNLE 101
                  Y A      DLE  ++   +          S Y  +    + L  T  R    
Sbjct: 67  RTPLAVWYAANTEDIPDLEKQMRRKMHYVIHPDYLWSSIYERARTQDAELLQTLQRGFKY 126

Query: 102 SYIASFSDNAKAIFEDFDFSST------IARLEK-AGLLYKICKNFSGIELHPDTVPDRV 154
               SF+   + +F + +  S       + R +K   ++ K+ +  +      D     +
Sbjct: 127 IENESFASAFQGLFSELNLHSEKLGRTPVDRNKKLCAIITKVAEGIAQFSTDSD-----I 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F +   + A +F TP+ +  + + ++              +  + D  C
Sbjct: 182 LGDAYEYLIGQFAAGSGKKAGEFYTPQSLSTILSRIVTLDSQEPATGKKRKLSCVLDFAC 241

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L   +N     G+H     I + +GQE    T+ +    ML+  +     +D   
Sbjct: 242 GSGSLL---LNVRKQMGTH----GIGMIYGQEKNITTYNLARMNMLLHGV-----KDSGF 289

Query: 275 NIQQGSTLSKD------LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-G 325
            I  G +L  D      +   K+      ++NPPF  +WE ++         GE  RF  
Sbjct: 290 QIHHGDSLINDWDMLSEMNPAKKVKCDAIVANPPFSYRWEPNEAL-------GEDFRFKS 342

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GL   S     FL+H  + L    +  G  AI+L    LF G     ES IR  LL++ 
Sbjct: 343 HGLAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGV---ESRIRTKLLKDG 395

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ LP +LFF T I   + +L   K  +    V  INA++ +     +GK++  + 
Sbjct: 396 HIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINASEYF----EKGKRQNQLL 448

Query: 446 DDQRRQILDIYVSR-ENGKFSRMLD 469
            +    I++ Y  R E  +++R ++
Sbjct: 449 PEHIDNIVETYQYRKEEERYARRVE 473


>gi|264677662|ref|YP_003277568.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208174|gb|ACY32272.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 253

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 19/107 (17%)

Query: 578 NGEWI---PDTNLTEYENVPYL--------ESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
            GE+I   PD+ L + ENVP            I DYF+REV PHV +A+I        DK
Sbjct: 149 TGEYIEYEPDSELRDTENVPLALDTSLSASSVIHDYFIREVRPHVDEAWI------AIDK 202

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +  +GYEI+FN++FYQ++P R L+++ AE+  +EA+   LL+++ +
Sbjct: 203 TV--IGYEISFNKYFYQHKPLRSLEEVTAEILALEAETDGLLKQLVS 247


>gi|227878602|ref|ZP_03996525.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256843208|ref|ZP_05548696.1| type I restriction modification system [Lactobacillus crispatus
           125-2-CHN]
 gi|256850434|ref|ZP_05555862.1| type I restriction modification system [Lactobacillus crispatus
           MV-1A-US]
 gi|262046415|ref|ZP_06019377.1| type I restriction modification system [Lactobacillus crispatus
           MV-3A-US]
 gi|293382103|ref|ZP_06628049.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|312977434|ref|ZP_07789182.1| type I restriction-modification system, M subunit [Lactobacillus
           crispatus CTV-05]
 gi|227861808|gb|EEJ69404.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256614628|gb|EEU19829.1| type I restriction modification system [Lactobacillus crispatus
           125-2-CHN]
 gi|256712831|gb|EEU27824.1| type I restriction modification system [Lactobacillus crispatus
           MV-1A-US]
 gi|260573286|gb|EEX29844.1| type I restriction modification system [Lactobacillus crispatus
           MV-3A-US]
 gi|290921338|gb|EFD98394.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|310895865|gb|EFQ44931.1| type I restriction-modification system, M subunit [Lactobacillus
           crispatus CTV-05]
          Length = 483

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 142/336 (42%), Gaps = 46/336 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++     + K   L KI K+   ++    +  D  + ++YE L+ +  SEV  GA  + T
Sbjct: 92  YADASTSIHKPADLEKIIKDIDALDWW--SARDEGLGDLYEGLMEKNASEVKSGAGQYFT 149

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------CG 231
           PR ++++   +            P +     DP  GT GF+  A  ++ D          
Sbjct: 150 PRVLINMMVRMT----------QPKIGDRCNDPAAGTFGFMVAADRYLKDQTDDYSTLSA 199

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL   TH + +    +  ++          ++ G +LS +    K 
Sbjct: 200 DKEEFQVKEAFSGMELVETTHRLAMMNEYLHGMDG--------RLELGDSLSSNGKWMKD 251

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K   D D+V ++              K S+  + FL  + N L+   N
Sbjct: 252 FDVVLTNPPFGTKKGSD-DSVSRDDLT----------YKTSNKQLNFLQIIYNSLK--HN 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G  RAA+V+  + LF    G GE+ IR+ LL    +  I+ LPT +F+   + T +   +
Sbjct: 299 GKARAAVVVPDNVLF--ADGVGEA-IRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFT 355

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             ++++   K   I   D+   +R+ GK+  + + D
Sbjct: 356 RGESDKDNTKETWI--YDMRHQMRSFGKRNPLSDKD 389


>gi|317486936|ref|ZP_07945746.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316921811|gb|EFV43087.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 144/345 (41%), Gaps = 52/345 (15%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +A  S+N      +  +   ++ +++   L KI  + + ++ +  +  +  + N+YE L+
Sbjct: 74  LAELSENGTGRVREI-YQGAVSNIDEPKNLEKIISSINALDWY--SAQEEGLGNLYEGLL 130

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  +E   GA  + TPR ++ +   L+           P +     DP CGT GF+  A
Sbjct: 131 EKNANEKKSGAGQYFTPRVLIDVMVRLM----------KPQVGELCNDPACGTFGFMIAA 180

Query: 224 MNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
             ++ D    +                 G EL  +TH + +   ++  +E +        
Sbjct: 181 DRYLKDQTDDYFDLDEDQAAFQKQRAFTGCELVHDTHRLALMNAMLHGIEGE-------- 232

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I    TLS      K +   L+NPPFG K            K GE           S+  
Sbjct: 233 ILLADTLSTAGKAMKGYDLVLTNPPFGTK------------KGGERATRDDFAFATSNKQ 280

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALP 394
           + FL H+   L+     GGRAA+VL  + LF +G  G     IR  L++   +  ++ LP
Sbjct: 281 LNFLQHIYRSLKR----GGRAAVVLPDNVLFADGDGG----RIRADLMDKCTLHTVLRLP 332

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           T +F+   + T +   +  +++  RG  + +   DL T++ + GK
Sbjct: 333 TGIFYAQGVKTNVLFFTRGQSD--RGNTKEVWFYDLRTNMPSFGK 375


>gi|302877623|ref|YP_003846187.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302580412|gb|ADL54423.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 143/335 (42%), Gaps = 69/335 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+R    + +  A +F TPR V      +           +P +   + DP 
Sbjct: 143 LFGDMYEQLLRDL--QAAGNAGEFYTPRAVTEFMVRMT----------NPRLGEKVMDPA 190

Query: 214 CGTGGFLTDAMNHV--ADCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL+ ++ H+   D  +      +     G E +P  H +C   M++  +      
Sbjct: 191 CGTGGFLSCSIEHIRRQDVKTVDDEAALQASIFGIEKKPMPHLLCTTNMILHGI------ 244

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           D+  NI+  +TL++ L +    +R    ++NPPFG     ++D +E            P 
Sbjct: 245 DVPSNIRHDNTLARPLISWTPKERVDVVVTNPPFGG---MEEDGIETNF---------PA 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL+ +   L+     GGRAA+VL    LF    G G ++ I+  LLE   
Sbjct: 293 AFRTRETADLFLVLIMQLLK----AGGRAALVLPDGFLF----GEGIKTRIKEKLLEECN 344

Query: 387 IEAIVALPTDLF-----FRTNI--------ATYLW---------ILSNRKTEERRGKVQL 424
           +  IV LP  +F      +TN+          ++W         + S  KT+    K++ 
Sbjct: 345 LHTIVRLPNGVFAPYTGIKTNLLFFSKGAPTQHIWFYEHPYPAGVKSYNKTKPM--KIEE 402

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +    W  + ++G   R+ N+   +  LD   +R
Sbjct: 403 FDVEAAWWGVESDGFSHRVENEQAWKVSLDDIKAR 437


>gi|200387513|ref|ZP_03214125.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238910689|ref|ZP_04654526.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|199604611|gb|EDZ03156.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 489

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 48/306 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L++  A    N +       FS     ++   LL ++    + I+         +  +IY
Sbjct: 90  LKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDF-TSASERHLFGDIY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +++   S  + G  +F TPR V    T  ++D  D      P +  ++ DP CGTGGF
Sbjct: 149 EQILKDLQSAGNAG--EFYTPRAV----TRFMVDRVD------PKLGESIMDPACGTGGF 196

Query: 220 LTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           L  A +HV +        H  +   +  HG E +   H +    ML+  +E      +  
Sbjct: 197 LACAFDHVKNNYVKSVADHQTLQQQI--HGVEKKQLPHLLATTNMLLHGIE------VPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L       GRAA+VL    LF    G G +++I++ L E   +  IV 
Sbjct: 297 TADLFLQLIIEVLA----KNGRAAVVLPDGTLF----GEGVKTKIKKLLTEECNLHTIVR 348

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 349 LPNGVF 354


>gi|167892258|ref|ZP_02479660.1| N-6 DNA methylase [Burkholderia pseudomallei 7894]
          Length = 472

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 155/367 (42%), Gaps = 64/367 (17%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNL 100
           ++LE   +  RS +  K L +     D E     A  +F NT  +  L  L  T    N 
Sbjct: 31  QQLEVMQDGYRSPI-PKALQWRTWAADPEGITGDALIAFINTELFPQLKELPVTGKNANR 89

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
              +       + +FED         ++   L+ ++    SG++ + D    +   +IYE
Sbjct: 90  SRVV-------RGVFED-----AYNYMKSGQLMRQVVNKISGVDFN-DLAERKHFGDIYE 136

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+    S  + G  ++ TPR V    TA ++D  D      PG I  L+DP+ GTGGFL
Sbjct: 137 QLLNDLQSAGNAG--EYYTPRAV----TAFMVDRIDP----KPGEI--LFDPSVGTGGFL 184

Query: 221 TDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           T ++ H+ D           +   L    ++  P  H +CV  ML+  +E DP       
Sbjct: 185 TCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLP--HMLCVTNMLLHGIE-DP-----SF 236

Query: 276 IQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           ++  +TL++   +     R    L+NPPFG    K++D +E            P   +  
Sbjct: 237 VRHDNTLARPYISYGQADRVDIILTNPPFGG---KEEDGIESNF---------PAHLRTK 284

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIV 391
           + + LFL      L+     GGRA IVL    LF    G G ++ ++  LLE   +  IV
Sbjct: 285 ETADLFLALFIRLLK----PGGRAGIVLPDGSLF----GEGVKTRLKAQLLEECNLHTIV 336

Query: 392 ALPTDLF 398
            LP  +F
Sbjct: 337 RLPNSVF 343


>gi|330978665|gb|EGH77946.1| N-6 DNA methylase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 328

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 122/289 (42%), Gaps = 57/289 (19%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           AIF  F   + I    K   L ++    S I L  DT  D     +YE L+++   +   
Sbjct: 75  AIF--FKAQNKIQDPAKLSRLVQLIDAESWISLGADTKGD-----LYEGLLQKNAEDTKS 127

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG- 231
           GA  + TPR ++    A +           P  ++ + DP CGTGGF   A N +   G 
Sbjct: 128 GAGQYFTPRALIETIVACV----------RPEPMKIIADPACGTGGFFLGAYNWLTRPGA 177

Query: 232 ----SHHKIPPILVPHGQELEPETHAVCVAGMLIR---RLESDPRRDLSKNIQQGSTLSK 284
               +  +       HG E+   T  +C+  + +     L+ +P    S  +     L  
Sbjct: 178 TLNKAQKEFLRDKTFHGNEIVSNTRRMCLMNLFLHNVGELDGEPLVARSDALITEPKLKV 237

Query: 285 DLFTGKRFHYCLSNPPFGKK---------WEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           D        Y L+NPPFGKK          ++DK+A+  E ++             S+  
Sbjct: 238 D--------YVLANPPFGKKSSMTISNEEGDEDKEALTYERQD--------FWETTSNKQ 281

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           + FL H+ + L++     G+AA+VL  + LF G AG    +IRR LL+N
Sbjct: 282 LNFLQHIVSMLKVD----GKAAVVLPDNVLFEGGAG---EKIRRKLLDN 323


>gi|294850060|ref|ZP_06790798.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus A9754]
 gi|294823194|gb|EFG39625.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus A9754]
          Length = 311

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 131/333 (39%), Gaps = 66/333 (19%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +     R  + +
Sbjct: 234 SGSLLLRV----------GKETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           I+   TL    F G  F   ++NPP+  KW  D
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTAD 311


>gi|322515486|ref|ZP_08068472.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322118453|gb|EFX90704.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 552

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 160/334 (47%), Gaps = 56/334 (16%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPT 213
           + I+E+LI+ + +       ++ TP  V  +  A+L+ P++       G ++ +  YDP+
Sbjct: 185 ATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILV-PENV-----RGQLQNVSCYDPS 238

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRR 270
            G+G  L +  + + +  C          + + Q++ +  ++ + +  +L   + S P  
Sbjct: 239 AGSGTLLMNIAHAIGEKKC----------IIYTQDISQKSSNLLRLNLILNNLVASIP-- 286

Query: 271 DLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEK-EHKNGELGRFG 325
               N+ QG+T++          ++F Y +SNPPF   + + ++ +    HK+    RF 
Sbjct: 287 ----NVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREELAMPAHKD----RFF 338

Query: 326 PGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEI 377
            G+P +            LF+ H+ + L+      G+AA+VL +  +    A SG + +I
Sbjct: 339 AGVPNVPKAKKEKMAIYQLFVQHIIHSLK----ADGKAAVVLPTGFI---TAQSGIDKKI 391

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R +L+   ++  +V++P+++F  T     +  L     E     V LI+A++L   I+  
Sbjct: 392 REFLVNEKMLAGVVSMPSNIFATTGTNVSILFLDRANKE----NVVLIDASNLGEKIKEG 447

Query: 438 GKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDY 470
             ++ +++ ++ ++I+D++  ++    FS ++ Y
Sbjct: 448 KNQKTVLSAEEEQRIIDVFNQKKAEDDFSVVVSY 481


>gi|302880109|ref|YP_003848673.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302582898|gb|ADL56909.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 143/335 (42%), Gaps = 69/335 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+R    + +  A +F TPR V      +           +P +   + DP 
Sbjct: 143 LFGDMYEQLLRDL--QAAGNAGEFYTPRAVTEFMVRMT----------NPRLGEKVMDPA 190

Query: 214 CGTGGFLTDAMNHV--ADCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL+ ++ H+   D  +      +     G E +P  H +C   M++  +      
Sbjct: 191 CGTGGFLSCSIEHIRRQDVKTVDDEAALQASIFGIEKKPMPHLLCTTNMILHGI------ 244

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           D+  NI+  +TL++ L +    +R    ++NPPFG     ++D +E            P 
Sbjct: 245 DVPSNIRHDNTLARPLISWTPKERVDVVVTNPPFGG---MEEDGIETNF---------PA 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL+ +   L+     GGRAA+VL    LF    G G ++ I+  LLE   
Sbjct: 293 AFRTRETADLFLVLIMQLLK----AGGRAALVLPDGFLF----GEGIKTRIKEKLLEECN 344

Query: 387 IEAIVALPTDLF-----FRTNI--------ATYLW---------ILSNRKTEERRGKVQL 424
           +  IV LP  +F      +TN+          ++W         + S  KT+    K++ 
Sbjct: 345 LHTIVRLPNGVFAPYTGIKTNLLFFSKGAPTQHIWFYEHPYPAGVKSYNKTKPM--KIEE 402

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +    W  + ++G   R+ N+   +  LD   +R
Sbjct: 403 FDVEAAWWGVESDGFAHRVENEQAWKVSLDDIKAR 437


>gi|145589316|ref|YP_001155913.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047722|gb|ABP34349.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 490

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 45/252 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+R    + +  A +F TPR V      ++          +P +   + DP 
Sbjct: 143 LFGDMYEQLLRDL--QAAGNAGEFYTPRAVTEFMVQMV----------NPRLGEKVMDPA 190

Query: 214 CGTGGFLTDAMNHV--ADCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL+ ++ H+   D  +      +     G E +P  H +C   M++  +      
Sbjct: 191 CGTGGFLSCSIEHIRKQDVKTLEDEAQLQGSIFGIEKKPMPHLLCTTNMILHGI------ 244

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           D+  NI+  +TL++ L +    +R    ++NPPFG     ++D +E            P 
Sbjct: 245 DVPSNIRHDNTLARPLISWGPSERVDVVVTNPPFGG---MEEDGIETNF---------PA 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL+ +   L+     GGRAA+VL    LF    G G ++ I+  LLE   
Sbjct: 293 AFRTRETADLFLVLIMQMLK----PGGRAAVVLPDGFLF----GEGIKTRIKEKLLEECN 344

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 345 LHTIVRLPKGVF 356


>gi|317009085|gb|ADU79665.1| type I restriction enzyme M protein [Helicobacter pylori India7]
          Length = 544

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 35/296 (11%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ + +       ++ TP  +  +   LL+          P     +YDP+ GTG
Sbjct: 190 IFEYLIKDYNNNSGGTYAEYYTPLSIASIIAKLLV--------SVPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLKNAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD F GK   Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKD-FKGK-MDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  +V 
Sbjct: 350 IYTLFFQHCLNML----SHKGKGAIIVPTGFI---SAKSGIENKIVRHLVDEKLVYGVVC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT     +V LI+A+ L      N+ KK R+  +D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKTPSENEEVILIDASKLGEEYTENKNKKTRLRKND 456


>gi|254435715|ref|ZP_05049222.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
 gi|207088826|gb|EDZ66098.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
          Length = 398

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 123/267 (46%), Gaps = 48/267 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  + G  ++ TPR V      +L           P + +++ DP
Sbjct: 143 HLFNDIYEKILADLQSAGNAG--EYYTPRAVTQFMVDIL----------DPQLGQSILDP 190

Query: 213 TCGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFLT A+ H    V +     ++   +  HG E +P  H + +  +++  +    
Sbjct: 191 ACGTGGFLTCAIEHLNKQVKNNDDRQRLQDSI--HGVEKKPLPHMLAMTNVMLHGI---- 244

Query: 269 RRDLSKNIQQGSTLSKDL--FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D+  NI+  +TLS+ L  ++ K R    ++NPPFG   E   D +E         R  
Sbjct: 245 --DVPTNIRHDNTLSRPLKNYSPKERVDIIITNPPFGGMEE---DGIENNFPRKYQTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
               + +D  M  +MHL        +  G+AA+VL    LF    G G ++ ++R LLE 
Sbjct: 298 ----ETADLFMALIMHLLK------HDTGKAAVVLPDGFLF----GEGTKTTLKRELLEE 343

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWIL 410
             +  IV LP  +F   T+IAT   +L
Sbjct: 344 FNLHTIVRLPKGVFAPYTSIATIFCLL 370


>gi|186684991|ref|YP_001868187.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467443|gb|ACC83244.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 489

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 135/340 (39%), Gaps = 53/340 (15%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           S   +AIF +   S  I R+ K   L            H D   D     +YE L+++  
Sbjct: 84  SQRVQAIFVNAQTSLKIPRILKK--LVTSIDELDWFSEHRDEFGD-----LYEGLLQKNA 136

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E   GA  + TPR ++    AL+        K  PG +  + DP  GTGGFL     ++
Sbjct: 137 DEKKSGAGQYFTPRPLIDCMVALI--------KPQPGEL--IQDPAAGTGGFLIAGDRYI 186

Query: 228 AD-------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                      +          +G EL  + H + +  M++  +E          +  G 
Sbjct: 187 RQYHDPFEWTEAQQSFQQYQAFYGMELVQDAHRLMLMNMMLHGIEG--------AVDLGD 238

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TLS       +    L+NPPFG K            K G L          S+  + FL 
Sbjct: 239 TLSSQGQRLAKADVILTNPPFGTK------------KGGGLPSRDDFTYSTSNKQLAFLQ 286

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+  P   GRAA+VL  + LF    G G+S IR  L+    +  I+ LPT +F+ 
Sbjct: 287 HIYRSLK--PE--GRAAVVLPDNVLFED--GQGKS-IRADLMNKCNLHTILRLPTGIFYA 339

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
             + T +       TE  +G  + +   D+ T++ + GK+
Sbjct: 340 QGVKTNVLFFQRGTTE--KGNTKAVWFYDMRTNMPSFGKR 377


>gi|160934947|ref|ZP_02082333.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753]
 gi|156866400|gb|EDO59772.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753]
          Length = 507

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 142/358 (39%), Gaps = 51/358 (14%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
            YN S   L+TL     +N     ++           D  ++  ++ +E+   L KI   
Sbjct: 87  LYNYSWEYLTTLEGIELKNYYMKLLSELGSTGIPKISDI-YTKAVSSIEEPKNLQKIISE 145

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            + ++          + ++YE L+++   E   GA  + TPR ++ + T L+        
Sbjct: 146 INKLDWFE--AKQEGLGDLYEGLLQKNADEKKSGAGQYFTPRVLIDVMTNLI-------- 195

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP------HGQELEPETHA 253
             SP      +DP CGT GF+  A  H  +    + +    +       +G EL  + H 
Sbjct: 196 --SPKFGEKCFDPACGTFGFMISAYQHTTNGVDLYSLSDQEMAAFQDSFYGVELVHDAHR 253

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +    +  + +        +I    +LS      K F   L+NPPFG K         
Sbjct: 254 LALMNAYLHNVPA--------HIFCEDSLSPSAKRLKGFDVILTNPPFGTK--------- 296

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              K GE         + S+  + FL  +   L+   +G  R A+VL  + LF    G G
Sbjct: 297 ---KGGERTSRDDISFQTSNKQLNFLQVIYRSLK--ADGNARCAVVLPDNVLFAD--GDG 349

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            S +RR L++   +  I+ LPT +F+   + T +   +       RGK +  N  ++W
Sbjct: 350 VS-VRRELMDFCNLHTILRLPTGIFYAQGVKTNVLFFT-------RGKTEKDNTKEVW 399


>gi|227114146|ref|ZP_03827802.1| subunit M of type I restriction-modification system [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 490

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 51/295 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     ++   LL ++    + I+    +    +  +IYE ++R   S  + G  +F T
Sbjct: 110 FSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGDIYEQILRDLQSAGNAG--EFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHK 235
           PR V       +           P +  ++ DP CGTGGFL  A +HV     +    HK
Sbjct: 167 PRAVTRFMVNRI----------DPKLGESIMDPACGTGGFLACAFDHVKEHYVNTTEDHK 216

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHY 294
                + +G E +   H +C   ML+  +E      +   I+  +TL+K L +  ++   
Sbjct: 217 TLQKQI-YGVEKKQLPHLLCTTNMLLHGIE------VPVQIRHDNTLNKPLSSWDEQLDV 269

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFG     ++D +EK           P   +  + + LFL  +   L       G
Sbjct: 270 IVTNPPFGG---TEEDGIEKNF---------PAEMQTRETADLFLQLVIEVLA----DKG 313

Query: 355 RAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           RAA+VL    LF    G G +++I++ L E   +  IV LP  +F      +TNI
Sbjct: 314 RAAVVLPDGTLF----GEGVKTKIKKLLTEACNLHTIVRLPNGVFNPYTGIKTNI 364


>gi|242278889|ref|YP_002991018.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242121783|gb|ACS79479.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 489

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 141/331 (42%), Gaps = 62/331 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-ESPGMIRTLYDPT 213
           +S++YE  I+  G+    G E + TPR ++            A+ K  SP +  T+YD  
Sbjct: 157 LSHLYETKIKNMGNAGRNGGE-YYTPRPLIR-----------AMIKVASPTIGETIYDGA 204

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRR 263
           CG+ GFL ++ +H+   GS  K   + V           +G+E +   + + +  M++  
Sbjct: 205 CGSAGFLCESYDHLR-YGSDGKEAKLSVDQLRSLQTSTFYGKEKKSLAYVIAIMNMILHG 263

Query: 264 LESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++       + NI   +TL+    D+    R+   L+NPPFG K  K            E
Sbjct: 264 ID-------TPNILHTNTLADNLADVQEKDRYDIILANPPFGGKERK------------E 304

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           + +  P   K  + + LFL H    L+     GGRAA+V+ ++ L N    S    +R+ 
Sbjct: 305 IQQNFP--IKTGETAFLFLQHFIKYLK----AGGRAAVVIKNTFLSNSDNAS--KSLRKE 356

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  +  ++  P   F    + T +          +    QL     L         K
Sbjct: 357 LLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAATRKTWYYQLDPGRSL--------GK 408

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
              +NDD  ++ +++   ++  + S ++D++
Sbjct: 409 TNPLNDDDLKEFIELQKDQQESEKSWVVDFK 439


>gi|261415743|ref|YP_003249426.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372199|gb|ACX74944.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325604|gb|ADL24805.1| type I restriction-modification system, M subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 624

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 43/314 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K  LL ++ + F+   L  D V   VM  IYE+ + +F   ++     F TP+ +V +  
Sbjct: 144 KDNLLAELLRTFNNNAL--DDVGGDVMGRIYEYFLSKFAKNIASDDGVFFTPKSLVKMIV 201

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L        + S G+   L DP CG+GG      + V   G        +  +GQE  
Sbjct: 202 NVL--------EPSYGV---LLDPACGSGGMFVQTGDFVNAAGMASN--ETMTFYGQEKV 248

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWE 306
                +C+  M +  L       + K+  + ++   D    TG +  Y ++NPPF     
Sbjct: 249 EYNAQLCLMNMAVHGLTG-----VVKSGDEANSFYHDAHNLTG-QCDYVMANPPF----- 297

Query: 307 KDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            + D V+ E      GR   GLP      +I +G+ L++ +  + L    N  GRA  V+
Sbjct: 298 -NVDKVKAESCQSA-GRLPFGLPAVNKDKEIGNGNYLWISYFYSYL----NEKGRAGFVM 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ++S      + S + +IR  L+    ++ ++++  + F+  ++   LW     K +  + 
Sbjct: 352 AASAT---DSQSKDKDIREKLVATGHVDCMISVGNNFFYTKSLPCTLWFFDKCKKKNIKD 408

Query: 421 KVQLINATDLWTSI 434
           KV  I+A + +T +
Sbjct: 409 KVLFIDARNYYTVV 422


>gi|148262629|ref|YP_001229335.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146396129|gb|ABQ24762.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 541

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 136/304 (44%), Gaps = 53/304 (17%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S I+E+LI+ +  +      ++ TP  V  +  A+L+D         P    T YDP+ G
Sbjct: 183 STIFEYLIKDYNKDGGGKYAEYYTPHAVSKIMAAILVD--------KPVKNVTCYDPSAG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   MN     G           + Q++  ++       ML   L  +      +N
Sbjct: 235 SGTLL---MNLAHAIGEDR-----CTIYSQDISQKS-----TSMLRLNLILNNLVHSIQN 281

Query: 276 IQQGSTL-------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           I QG+T+          L T   F Y +SNPPF   +   ++ +E +       RF  G+
Sbjct: 282 IIQGNTMLTPYHKSGDKLMT---FDYVVSNPPFKLDFSDFRNDLETKQNR---DRFFAGI 335

Query: 329 PKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRW 380
           PKI +         +LF+ H+   L    +  G+AAIV+ +  +    A SG E +IR  
Sbjct: 336 PKIPNKDKDKMAIYLLFIQHIMFSL----SAKGKAAIVVPTGFI---TAQSGIEKKIREK 388

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+   ++  +V++P+++F  T     +  L    T   +G + L++A+ L T+++ EGK 
Sbjct: 389 LVVAKMLRGVVSMPSNIFATTGTNVSVLFLDKTNT---KGDIVLMDASKLGTTVK-EGKN 444

Query: 441 RRII 444
           ++ +
Sbjct: 445 QKTV 448


>gi|300725853|ref|ZP_07059318.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP)
           [Prevotella bryantii B14]
 gi|299776866|gb|EFI73411.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP)
           [Prevotella bryantii B14]
          Length = 598

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 40/310 (12%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ + F+   L  D +   V+  IYE+ + +F   V+     F TP+ +V +   +L
Sbjct: 137 LLRELLRIFNNKTL--DEIGGDVIGRIYEYFLSKFAKAVASDDGVFFTPKSLVKMLVNVL 194

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
            +P+  +          + DP CG+GG      + V   G +      +  +GQE     
Sbjct: 195 -EPEQGV----------MLDPACGSGGMFVQTGDFVNAGGMNANTQ--MTFYGQEKVEYN 241

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +C+  M +  L     R +S +             GK   Y ++NPPF      + D 
Sbjct: 242 AQLCLMNMAVHGLNG---RIVSGDEANSFYHDAHNLAGK-CDYVMANPPF------NVDK 291

Query: 312 VEKEHKNGELGRFGPGLP-------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           V+ E  +   GR   GLP       +IS+ + L++ +    L    N  GRA  V++SS 
Sbjct: 292 VKAESASAA-GRLPFGLPGVNAKTKEISNANYLWISYFYAYL----NDHGRAGFVMASSA 346

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
                + + + +IR  L+    ++ +V++  + F+  ++   LW     K  E + +V  
Sbjct: 347 T---DSANKDRDIREKLVLTGDVDVMVSVGNNFFYTLSLPCSLWFFDKAKRLENKNRVLF 403

Query: 425 INATDLWTSI 434
           I+A + +T +
Sbjct: 404 IDARNYYTVV 413


>gi|301059619|ref|ZP_07200528.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300446265|gb|EFK10121.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 601

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 126/282 (44%), Gaps = 58/282 (20%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED--FMTPRDVVHLATALLLDPDDALFKE 201
           +L   +V   +M +I+E+L+     EV E  ++  F TPR V+     LL          
Sbjct: 146 QLDTRSVNSDIMGDIFEYLL----EEVKESGKNGQFRTPRHVIRFMVQLL---------- 191

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQEL-- 247
            P + +T+ DP CG+GGFL +++ H                G+ H   P+  P G++   
Sbjct: 192 EPELGKTILDPACGSGGFLLNSLLHWKAANTDEGVLRLEWDGAPHDTFPVW-PQGKQYNF 250

Query: 248 -------EPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCL 296
                  + +   V +A M  ++  LE+         + Q  +LSK L   +   + Y L
Sbjct: 251 SSFFRGYDNDRTMVRIAWMNLILHDLEA-------PEVHQLDSLSKRLSDDESGAYDYIL 303

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++D D  E   +     R G G   ++  S L  + L   L +    GGRA
Sbjct: 304 ANPPFTGNVDRD-DLSENWQR---FPRSGKGAVPLTTKSELLFVWLMLDLLI---NGGRA 356

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           A+++    LF   +     E+RR LL  + +EA+V+LP ++F
Sbjct: 357 AVIVPDGVLFG--STKAHRELRRQLLFENTLEAVVSLPPNMF 396


>gi|24375749|ref|NP_719792.1| type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
 gi|24350692|gb|AAN57236.1|AE015859_5 type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
          Length = 537

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 48/299 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR ++          D  +   +P     + DP  
Sbjct: 140 LGDLYEGLLEKNANETKSGAGQYFTPRALI----------DSMVRVINPQAGEVIQDPAA 189

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  A   + +  ++  +    + H       G EL P T  + +   L+  +E D
Sbjct: 190 GTAGFLIAAHEFIKNADNYDDLTLKEIEHLRNKAFIGVELVPSTRRLALMNCLLHGMEGD 249

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +  G++L +   +  +    L+NPPFG    K  DA         + R    
Sbjct: 250 DE----GVVHLGNSLGQVGMSLPKADIILANPPFGTS--KGGDA--------SITRDDLT 295

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P  S+  + FL H+   L+     GGRAA+VL  + LF   AG G +++RR L+    +
Sbjct: 296 YP-TSNKQLAFLQHIYRNLK----PGGRAAVVLPDNVLF--EAGVG-TDVRRDLMYKCNL 347

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT------DLWTSIRNEGKK 440
             I+ LPT +F+   + T +   +     +   K+Q  N T      DL T++ N GK+
Sbjct: 348 HTILRLPTGIFYAAGVKTNVLFFTKGSEAD---KLQEENCTTNTWVYDLRTNMPNFGKR 403


>gi|163858307|ref|YP_001632605.1| type I restriction modification enzyme M subunit [Bordetella petrii
           DSM 12804]
 gi|163262035|emb|CAP44337.1| type I restriction modification enzyme M subunit [Bordetella
           petrii]
          Length = 492

 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 134/310 (43%), Gaps = 54/310 (17%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           K+G L +   N    ++  ++  DR + +++YE ++    S  + G  ++ TPR V    
Sbjct: 118 KSGTLLRQVINTIEEDVDFNSSSDRHLFNDVYEKILSDLQSAGNAG--EYYTPRAVTQFI 175

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP--HGQ 245
             +L           P +  ++ DP CGTGGFLT A+ H+           +L    HG 
Sbjct: 176 VDIL----------DPKLGESILDPACGTGGFLTCAIEHLKKQVKTPDDNRLLQENIHGV 225

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFG 302
           E +P  H + +  M++  +      D+   I+  +TLS   KD     R    ++NPPFG
Sbjct: 226 EKKPLPHMLAMTNMMLHGI------DVPTRIRHDNTLSRPFKDYGPRDRVDIIITNPPFG 279

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                ++D +EK        R      + +D  M  + HL        +  GRAA+VL  
Sbjct: 280 G---MEEDGIEKNFLAKHQTR------ETADLFMALITHLLK------HDTGRAAVVLPD 324

Query: 363 SPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             LF    G G ++ ++R LLE   +  IV LP  +F     A Y  I +N    E+ G 
Sbjct: 325 GFLF----GEGVKTTLKRELLEEFNLHTIVRLPKGVF-----APYTSIATNILFFEKGGP 375

Query: 422 VQLINATDLW 431
            Q     D+W
Sbjct: 376 TQ-----DVW 380


>gi|120552975|ref|YP_957326.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120322824|gb|ABM17139.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 539

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 132/323 (40%), Gaps = 44/323 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR +++     L        K  PG    + DP  
Sbjct: 136 LGDLYEGLLEKNANETKSGAGQYFTPRALINTMVRCL--------KPQPG--ERIQDPAA 185

Query: 215 GTGGFLTDAMNHVA-------DCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLES 266
           GT GFL  A  ++        D  +  K       + G EL P T  + +   L+  +E 
Sbjct: 186 GTAGFLIAAHEYIKGQTDDLYDLTTEQKAFQTTKAYVGIELVPGTRRLALMNCLLHGMEG 245

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D        +  G+ L +     ++    L+NPPFG     D      +           
Sbjct: 246 DAE----GVVHLGNALGQTGAGLEKADVILANPPFGTSKGGDASITRDDLTY-------- 293

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K S+  + FL H+   L+     GGRAA+VL  + LF   AG G +++RR L+    
Sbjct: 294 ---KTSNKQLAFLQHIYRNLK----PGGRAAVVLPDNVLF--EAGVG-TDVRRDLMNKCN 343

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK---VQLINATDLWTSIRNEGKKRRI 443
           +  I+ LPT +F+   + T +   +     ++  +    + +   DL T++ + G KR  
Sbjct: 344 LHTILRLPTGIFYAQGVKTNVLFFTKGSAADKYQEEHCTEHVWVYDLRTNMPSFG-KRTP 402

Query: 444 INDDQRRQILDIYVSRENGKFSR 466
             D   +   D+Y    NG   R
Sbjct: 403 FGDQHLKPFEDVYGDSPNGDSER 425


>gi|71906938|ref|YP_284525.1| N-6 DNA methylase [Dechloromonas aromatica RCB]
 gi|71846559|gb|AAZ46055.1| N-6 DNA methylase [Dechloromonas aromatica RCB]
          Length = 529

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 39/280 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+ + +F     +    F TP  +V L   ++ +P              ++DP CG+G
Sbjct: 164 IYEYFLGKFALAEGQKGGVFYTPTSIVKLIVEII-EPFHG----------QIFDPACGSG 212

Query: 218 GFLTDAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G    +   V   G H K     L   G E   +T  +    + +  L  D        +
Sbjct: 213 GMFVQSAMFV---GRHKKRAAEELTVFGTEKSNDTVKLAKMNLAVHGLSGD--------V 261

Query: 277 QQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           ++ +T  +D      RF + ++NPPF      +   V+KE    +  RF  G+P   + +
Sbjct: 262 RESNTYYEDPHKAVGRFDFVMANPPF------NVSGVDKERIKDD-PRFPFGVPTTDNAN 314

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L++    + L    N  GRA  V+++S    G A   E EIR+ L+ +  +EAIV++  
Sbjct: 315 YLWIQLFYSAL----NNTGRAGFVMANSA---GDARGAELEIRKKLILSGGLEAIVSVGP 367

Query: 396 DLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSI 434
           + F+   +   LW     K + ER+ KV  I+A   +  +
Sbjct: 368 NFFYTVTLPCTLWFFDKTKAKRERKDKVLFIDARGYYRQV 407


>gi|254881455|ref|ZP_05254165.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           4_3_47FAA]
 gi|319642841|ref|ZP_07997479.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A]
 gi|254834248|gb|EET14557.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           4_3_47FAA]
 gi|317385585|gb|EFV66526.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A]
          Length = 472

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 145/361 (40%), Gaps = 66/361 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAVVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+E            +W        K  +  
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE------------IWFYDYRTDIKHTLAT 377

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   R  LD +VS  N +        T   R  K   P+      DKT L     DITW 
Sbjct: 378 NKLERHHLDDFVSCYNNRVETYDAENTPQGRWRKY--PVDEILTRDKTSL-----DITWI 430

Query: 506 K 506
           K
Sbjct: 431 K 431


>gi|301057181|ref|ZP_07198312.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300448739|gb|EFK12373.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 326

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 120/272 (44%), Gaps = 43/272 (15%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++ KNFS I   P+     +   IYE+ +  F     +G  +F TPR VV L    +++P
Sbjct: 86  QLLKNFSDI---PEDAAGDMFGQIYEYFLGNFAMAEGQGGGEFFTPRSVVRLMVE-IIEP 141

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPET 251
                        T++DP CG+GG    +   +      H++      L  +GQE   ET
Sbjct: 142 HRG----------TVFDPACGSGGMFVQSAKFIRR--HRHEMANGNGDLFVYGQEKTLET 189

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG------KK 304
             +    + +  L  D        I+Q +T  +D F    +F Y L+NPPF       K+
Sbjct: 190 VKLAKMNLAVNGLRGD--------IRQANTYYEDPFESFGQFDYVLTNPPFNVDDVSLKR 241

Query: 305 WEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            E DK  +      K  +  +   G   + + + L++   A  L+  P   GRAA+V+++
Sbjct: 242 VETDKRFNTYGIPRKKTKAKKKDQGNETVPNANYLWINLFATSLK--PE--GRAALVMAN 297

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           S      A   E+EIR+ L+ N+LI   + LP
Sbjct: 298 SA---SDARHSEAEIRKTLIRNNLIYGTLTLP 326


>gi|118578795|ref|YP_900045.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
 gi|118501505|gb|ABK97987.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
          Length = 488

 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 48/262 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  + G  ++ TPR V      +L           P + +T+ DP
Sbjct: 143 HLFNDIYEKILSDLQSAGNAG--EYYTPRAVTRFMVDML----------DPQLGQTILDP 190

Query: 213 TCGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFLT A+ H    V       ++   +   G E +P  H + +  M++  +    
Sbjct: 191 ACGTGGFLTCAIEHLNHQVKTAADRTRLQECIF--GVEKKPLPHMLAMTNMMLHGI---- 244

Query: 269 RRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D+  N++  +TLS   KD     R    ++NPPFG     ++D +E         R  
Sbjct: 245 --DVPTNVRHDNTLSRPLKDYGPKDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
               + +D  M  +MHL        +  G+AA+VL    LF    G G ++ ++R LLE 
Sbjct: 298 ----ETADLFMALIMHLLK------HDTGKAAVVLPDGFLF----GEGTKTNLKRELLEE 343

Query: 385 DLIEAIVALPTDLFF-RTNIAT 405
             +  IV LP  +F   T+IAT
Sbjct: 344 FNLHTIVRLPKGVFSPYTSIAT 365


>gi|158520840|ref|YP_001528710.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509666|gb|ABW66633.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 493

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 127/299 (42%), Gaps = 61/299 (20%)

Query: 112 KAIFED---FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFG 167
           + +FED   +  S T+ R     ++ KIC      E+  +T  DR    +IYE +++   
Sbjct: 109 RNVFEDAYNYMKSGTLMR----QVINKIC------EIDFNTQKDRHTFGHIYEQILKDLQ 158

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S  + G  +F TPR V                +  P +  T+ DP CGTGGFLT  + H 
Sbjct: 159 SAGNAG--EFYTPRAVTQFIVN----------RVDPKLSETVLDPACGTGGFLTGTIKHK 206

Query: 228 AD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            D         KI    +  G E +   H +CV  M++  +      D   +I+  +TLS
Sbjct: 207 RDHYVKTTEDEKILQASI-SGVEKKALPHMLCVTNMILNGV------DTPVSIRHDNTLS 259

Query: 284 ---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KD     R +  ++NPPFG   E   D +E            P   +  + + LFL 
Sbjct: 260 RPYKDYGEKDRVNVIVTNPPFGGMEE---DGIENNF---------PATFRTRETADLFLA 307

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
            +   L+     GGRAAIVL    LF    G G ++ ++  LL    +  IV LP  +F
Sbjct: 308 LIIKLLK----KGGRAAIVLPDGFLF----GEGMKTRLKETLLAECNLHTIVRLPNGVF 358


>gi|126463982|ref|YP_001045095.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105793|gb|ABN78323.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 481

 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 58/297 (19%)

Query: 112 KAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           + +FED ++F      ++   LL ++    +G++ + +    +   +IYE L+    +  
Sbjct: 104 RDVFEDAYNF------MKSGQLLRQVINKINGVDFN-NLTERQHFGDIYEQLLNDLQNAG 156

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           + G  ++ TPR V    TA ++   D      PG I  L DP CGTGGFLT AM H+ D 
Sbjct: 157 NAG--EYYTPRAV----TAFMVQQIDP----RPGEI--LMDPACGTGGFLTCAMRHMRD- 203

Query: 231 GSHHKIPP-----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             H ++P             E +P  H +CV  ML+  +E          ++  +TL++ 
Sbjct: 204 -RHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVEE------PHFVRHDNTLARP 256

Query: 286 LFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           L +    +R    L+NPPFG    K++D +E                +  + + LFL  +
Sbjct: 257 LTSWTRDERVDIVLTNPPFGG---KEEDGIENNFPTF----------RTRETADLFLALI 303

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
              L+     GGRAA+VL    LF    G G ++ ++  L+    +  IV LP  +F
Sbjct: 304 IRLLK----PGGRAAVVLPDGSLF----GEGIKTRLKEHLMAECNLHTIVRLPNSVF 352


>gi|148654895|ref|YP_001275100.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148567005|gb|ABQ89150.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 534

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 118/251 (47%), Gaps = 44/251 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  YE L+ R G E ++ A +F TPR ++     ++           P +  T+YDP 
Sbjct: 165 TITRFYEDLLARMGQE-NQIAGEFHTPRPIIRFMVEVI----------DPQIGETVYDPA 213

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL---EPETHAVCVAGM-LIRRLESDPR 269
           CG+ GFL  A  H+    + H +  +     +     E +  A  +  M LI    + P 
Sbjct: 214 CGSAGFLAQA--HLWMEKNAHTLEDLETLQQRTFYGREKKALAALLGTMNLILHGVTTP- 270

Query: 270 RDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                NI + +TL + + TG  +RF   L+NPPFG           KE ++ +     PG
Sbjct: 271 -----NIVRANTLEESVKTGVAERFDIVLTNPPFGG----------KEGRHIQQNFPVPG 315

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +   +LFL H+  KL+  P    RAA+V+    LF  R+G+  +E++R LL++  +
Sbjct: 316 ----NATELLFLQHIIKKLK--PTANARAAVVVPEGTLF--RSGAF-AEVKRMLLDDFHL 366

Query: 388 EAIVALPTDLF 398
            A+++LP   F
Sbjct: 367 FAVISLPPGAF 377


>gi|281421792|ref|ZP_06252791.1| type I restriction-modification system, M subunit [Prevotella copri
           DSM 18205]
 gi|281404150|gb|EFB34830.1| type I restriction-modification system, M subunit [Prevotella copri
           DSM 18205]
          Length = 477

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 128/313 (40%), Gaps = 59/313 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      L           P +  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIKAMVDCL----------QPQIGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++ +   +      L     HG ++ P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDYMKEQSQNRDKLDFLNNKALHGNDITPLVVTLASMNLYLHGIGTDHSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK----WEKDKDAVEKEHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     E ++     E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVEINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF G AG     IR+ LL +  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLFEGNAG---ETIRKKLLSDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+            ++W      G K  +  
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFTKGQPTK------------NIWFYDYRTGVKHTLAT 377

Query: 446 DDQRRQILDIYVS 458
           +   R  LD +V+
Sbjct: 378 NKLERHHLDDFVT 390


>gi|217980300|ref|YP_002364276.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500937|gb|ACK48909.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 492

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 139/318 (43%), Gaps = 61/318 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L++  G +    A +F TPR VV  A    +DP            +T+YD   
Sbjct: 161 LSLVYEGLLQNMG-DAGGYAGEFYTPRPVVR-AMIKAIDPQAG---------QTIYDAAA 209

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAGMLIRRLESDPR 269
           G+ GFL +   H+    S                G E     + + +  M++  +E    
Sbjct: 210 GSCGFLVEVFEHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMGMMNMILHGIE---- 265

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              S N+ +G+TL+   +D+    R+   L+NPPFG    K+KD +++            
Sbjct: 266 ---SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGG---KEKDQIQQ------------ 307

Query: 327 GLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             P  ++ + +LFL H    L+     GG+AAIV+    LF  +  S   ++++ LLEN 
Sbjct: 308 NFPIRANATELLFLQHFMKTLK----SGGKAAIVVPEGVLF--QTNSAFKQVKQELLENF 361

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRNEGKKRR 442
            +  I++LP  +F       Y  + +N    ER G       +D+W        +  K +
Sbjct: 362 NLHTILSLPAGVFL-----PYSGVKTNVLFFERSG-----GTSDVWYYECEPEKKLTKNK 411

Query: 443 IINDDQRRQILDIYVSRE 460
            I D+  ++ +++Y SRE
Sbjct: 412 PITDEHLKEFVELYRSRE 429


>gi|22299771|ref|NP_683018.1| type I site-specific deoxyribonuclease modification subunit
           [Thermosynechococcus elongatus BP-1]
 gi|22295955|dbj|BAC09780.1| type I site-specific deoxyribonuclease modification subunit
           [Thermosynechococcus elongatus BP-1]
          Length = 543

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 56/375 (14%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDR--VMSNI 158
           SFS + + +F + +  S     +K G  YK     +C     I       P    ++ + 
Sbjct: 131 SFSSSFQGLFSEINLDS-----DKLGKTYKQRNERLCTIIGRIAEGLAEFPQERDLLGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTG 217
           YE+LI +F +   + A +F TP+ +  + +A++ LD  D    +   + + +YD  CG+G
Sbjct: 186 YEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLDAQDPANGKREKLGK-VYDFACGSG 244

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +    +   G       +   +GQE    T+ +    ML+  L     +D    I 
Sbjct: 245 SLLLNVGRRMGRYG-------VGKLYGQEKNITTYNLARMNMLLHGL-----KDTEFEIF 292

Query: 278 QGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GL 328
            G +L  +    +         F   ++NPPF  +WE  ++  E         RF   GL
Sbjct: 293 HGDSLLNEWLLLREENPAKKIEFDAVVANPPFSLRWEPGEELAED-------FRFKDYGL 345

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL+H  + L    +  G  AI+L    LF G     E +IR+ LL +  I+
Sbjct: 346 APKSAADFAFLLHGFHFL----HKEGTMAIILPHGVLFRGNV---EEKIRKKLLLDGNID 398

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ L  +LF+ T I   + +L   K   +   V  INA +L+     +GK++  +  + 
Sbjct: 399 TVIGLAPNLFYSTGIPVCILVLKKCK---KFDDVLFINAAELY----EKGKRQNQLLPEH 451

Query: 449 RRQILDIYVSRENGK 463
             +I++ Y  R   K
Sbjct: 452 IDKIVETYQFRREVK 466


>gi|302035529|ref|YP_003795851.1| type I restriction endonuclease, M subunit [Candidatus Nitrospira
           defluvii]
 gi|300603593|emb|CBK39923.1| Type I restriction endonuclease, M subunit (modular protein)
           [Candidatus Nitrospira defluvii]
          Length = 647

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 123/286 (43%), Gaps = 64/286 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S +YE L+ + G + S+G + F TPR+V+    A++   D       P + +T+YDP 
Sbjct: 199 TLSQVYEDLLLKMGEKNSDGGQ-FFTPREVIR---AMVHTVD-------PSLGQTVYDPC 247

Query: 214 CGTGGFLTDAMNHVA------------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           CGTGGFL  A  H+A            D   H          G+E E     + +A +++
Sbjct: 248 CGTGGFLAIAYEHIARKLGKRANSTDLDTLKHDTF------FGREKENLVFPIALANLVL 301

Query: 262 RRLESDPRRDLSKNIQQGSTLSK-----DLF--TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             ++         N+  G+ L+K      LF    ++F   L+NPPFG K  KD      
Sbjct: 302 HGID-------RPNLWHGNALTKRATYAALFEQAPRQFDVILTNPPFGGKEGKDA----- 349

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             KN           + S   +LFL  +    EL PN  G  A+VL    LF     S  
Sbjct: 350 -QKNFAF--------ETSATQVLFLQDILA--ELAPN--GTCAMVLDEGLLFRTNE-SAF 395

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEER 418
            E +R L++   + AIV+LP  +F      + T L   +  K  +R
Sbjct: 396 VETKRKLVDECDLWAIVSLPGGVFSTAGAGVKTNLLFFTKGKKTQR 441


>gi|218440827|ref|YP_002379156.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173555|gb|ACK72288.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 356

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 43/235 (18%)

Query: 145 LHPD--TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           L+PD   V D  +   IYE+ + +F +  +    +F TP  +V L  A +L+PD  +   
Sbjct: 143 LNPDELKVADGDIFGRIYEYFLTQFANLKAHDNGEFFTPISLVTL-IANILEPDQGI--- 198

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  ++DP CG+GG    + + V      HK P +L   G E  P T  +    + +
Sbjct: 199 -------IFDPACGSGGMFVQSAHFVE---KQHKNPQMLTFRGLEKNPTTIRLAKMNLAV 248

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             LE D        IQ+  T  +D F  + +  Y ++NPPF    E D D V+K+     
Sbjct: 249 HGLEGD--------IQKAITYYEDPFQMEGKADYVMANPPFNVD-EVDADKVKKD----- 294

Query: 321 LGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             R   GLP      K+S+G+ L++ +  + L    N  G+A  V+SS     GR
Sbjct: 295 -SRLPFGLPGTNKNKKVSNGNYLWISYFYSYL----NERGKAGFVMSSQASSAGR 344


>gi|159026886|emb|CAO89137.1| hsdM [Microcystis aeruginosa PCC 7806]
          Length = 495

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 42/273 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE L+ +   +   GA  + TPR ++      L           P  + T+ DP 
Sbjct: 125 VKGDIYEGLLEKNAEDTKSGAGQYFTPRPLIWSMVECL----------RPQPMATIADPA 174

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGF   A N +       +     +     HG E+   T  + +  M +  +     
Sbjct: 175 CGTGGFFLAAYNFLVKNYPLDREQKEFLKKSTFHGNEIVANTRRLALMNMFLHNIG---- 230

Query: 270 RDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                N +Q    S D           Y L+NPPFGK     K ++   +++GE  R   
Sbjct: 231 ---DINDEQCFIASTDALIAPSPFSVDYVLANPPFGK-----KSSLTFTNEDGEQDREDL 282

Query: 327 GLPK------ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              +       S+  + F+ H+ + L+      G+AA+V+  + LF G  G+GE+ +R+ 
Sbjct: 283 TYNRQDFWATTSNKQLNFVQHIRSMLK----SRGQAAVVVPDNVLFEG--GAGET-VRKQ 335

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           LL    +  I+ LPT +F++  +   +    N+
Sbjct: 336 LLSTTDLHTILRLPTGVFYKQGVKANVIFFDNK 368


>gi|317405483|gb|EFV85792.1| type I restriction modification enzyme M subunit [Achromobacter
           xylosoxidans C54]
          Length = 492

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 54/310 (17%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           K+G L +   N    ++  ++  DR + ++IYE ++    S  + G  ++ TPR V    
Sbjct: 118 KSGTLLRQVINTIEEDVDFNSSSDRHLFNDIYEKILADLQSAGNAG--EYYTPRAVTQFM 175

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP--HGQ 245
             +L           P +  ++ DP CGTGGFLT A+ H+           +L    HG 
Sbjct: 176 VDIL----------DPKLGESILDPACGTGGFLTCAIEHLKKQVKTPDDNRLLQENIHGV 225

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFG 302
           E +P  H + +  M++  +      D+   I+  +TLS   KD     R    ++NPPFG
Sbjct: 226 EKKPLPHMLALTNMMLHGI------DVPTRIRHDNTLSRPFKDYGPRDRVDIIITNPPFG 279

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                ++D +EK        R      + +D  M  +M+L        +  GRAA+VL  
Sbjct: 280 G---MEEDGIEKNFLAKHQTR------ETADLFMALIMYLLR------HDTGRAAVVLPD 324

Query: 363 SPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             LF    G G ++ ++R LLE   +  +V LP  +F     A Y  I++N    E+ G 
Sbjct: 325 GFLF----GEGVKTTLKRELLEEFNLHTVVRLPKGVF-----APYTSIVTNILFFEKGGP 375

Query: 422 VQLINATDLW 431
            +     D+W
Sbjct: 376 TK-----DVW 380


>gi|149203576|ref|ZP_01880545.1| N-6 DNA methylase [Roseovarius sp. TM1035]
 gi|149142693|gb|EDM30735.1| N-6 DNA methylase [Roseovarius sp. TM1035]
          Length = 495

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 135/334 (40%), Gaps = 54/334 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+  I  L +   L  +  N   I+    T  +  + ++YE L+++  S+    A  + T
Sbjct: 94  FTDAITHLREPKDLKTLTTNIDKIDWF--TAREDGLGDMYEGLMQKVMSDTKSKAGQYFT 151

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR         L+D    L +  PG +  + DP  GTGGFL  A  ++ D          
Sbjct: 152 PR--------ALIDSIIRLIQPQPGEV--IQDPATGTGGFLIAADRYIKDATDDLFKLSE 201

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G E  P+T  +CV  ML+  +ES    + S    QG  L        R
Sbjct: 202 DQGRFQRRQAFRGHEWVPDTRRLCVMNMLLHGIESLVGCEDS-CAPQGEALG-------R 253

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMHLANKLELPP 350
               L+NPPF K        V +       G R GP         M FL H    L+   
Sbjct: 254 ADVILTNPPFNKM----PGGVNRPDFTLTAGERVGP---------MPFLEHAIRMLK--- 297

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGR AIV+  + LF    G+   E+RR+L+ N  +  I+ LPT +F+   + T +   
Sbjct: 298 -PGGRCAIVMPDNILFGDGLGT---ELRRFLMVNCNLHTILRLPTGIFYAQGVKTNVMFF 353

Query: 411 S--NRKTEERRGKVQLINAT---DLWTSIRNEGK 439
           +    K      KVQ   A    DL T++ + GK
Sbjct: 354 TRVTDKVYPANHKVQGTQAVWFYDLRTNMPSFGK 387


>gi|330814745|ref|YP_004362920.1| N-6 DNA methylase [Burkholderia gladioli BSR3]
 gi|327374737|gb|AEA66088.1| N-6 DNA methylase [Burkholderia gladioli BSR3]
          Length = 474

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 129/305 (42%), Gaps = 52/305 (17%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV- 227
           E    ++D  TP ++  + + ++          SP    T+ DP CG G FL      V 
Sbjct: 153 EARRRSDDSFTPTEIAGVVSRIV----------SPVQGETVCDPCCGVGTFLVACQRRVD 202

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            D G            GQE++  T A+    + +R         L + I+ G TL     
Sbjct: 203 GDLGLF----------GQEMDGRTWAIAKMNLFMRG-------QLEQQIEWGDTLRYPRL 245

Query: 288 TG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  ++F   +S PP G +    ++A+   +     GR+  G+P        F+ H+
Sbjct: 246 LDSEGKLRKFDVVVSMPPLGARAWGQEEAIYDHY-----GRYRRGIPPRFSPEFAFISHM 300

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+ P +G  R A+V+    LF G A   E +IR  LL  +L++A++ALP  L   T+
Sbjct: 301 VETLD-PLHG--RLAVVVPFGVLFRGAA---EKQIRERLLRENLVDAVIALPPRLLGHTS 354

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I   + +L   +T      V  I+A   + +    GK R ++ +    +I   Y  R++ 
Sbjct: 355 IPLAIMVL---RTGRAVSDVFFIDAGRAYEA----GKTRNVLTEQHIERIEHTYRERQDV 407

Query: 462 GKFSR 466
            +F+R
Sbjct: 408 PRFAR 412


>gi|297192313|ref|ZP_06909711.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719705|gb|EDY63613.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 519

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 34/263 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI R  S+   GA  + TPR ++      +           P    T+ DP CGTGG
Sbjct: 140 YEALIARSASDTKAGAGQYFTPRALIESIVRCM----------RPTPYDTITDPACGTGG 189

Query: 219 FLTDAMNHVA-DCGSH------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           FL  A  ++  + G        H++    +  G E+ P T  +     L+  L  DP  +
Sbjct: 190 FLIAAYEYITREYGDDLPDEDLHRLRTESI-WGHEIVPATARLAAMNCLLHSL-GDPTGE 247

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW-------EKDKDAVEKEHKNGELGRF 324
               I  G  L+K     +     L+NPPFG+K        E + +A ++++       F
Sbjct: 248 --PIIDVGDALAKP--PERHASLVLANPPFGRKSGINVSGKEAEAEADDRDNVTYNRPDF 303

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G    ++  + FL H+  +L       GRAA+++    L+ G AGS    +RR LL  
Sbjct: 304 WVGEQTTTNKQLNFLQHIGTQL----TDKGRAAVIVPDGVLYEGGAGSVGDLVRRELLTG 359

Query: 385 DLIEAIVALPTDLFFRTNIATYL 407
             +  ++ LP ++F+   +  ++
Sbjct: 360 YNLHTMLRLPENIFYAGGVKAHV 382


>gi|325268989|ref|ZP_08135610.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella multiformis DSM 16608]
 gi|324988610|gb|EGC20572.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella multiformis DSM 16608]
          Length = 176

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS----- 65
           LAN IW   E +   +  ++   VILPFTLLRRL+C LE     + E   A  G+     
Sbjct: 6   LANVIWDIKEVIRNYYDDSEVEDVILPFTLLRRLDCVLEDKYDVILE---ALDGTPAEMR 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF----- 118
              LES ++  G +F+N S  SL  L ++  +  +  ++YI  F+ N K I  +F     
Sbjct: 63  KYKLESLMRQNGLTFFNLSGLSLRKLLNSPDQIGDAFKTYIEGFTPNVKDILANFVHEDG 122

Query: 119 -----DFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSN 157
                D S   ARLE+   L+ +   F    +LHP  V + ++ N
Sbjct: 123 DSGIVDLSKIYARLERGNKLFAVVMQFVEKADLHPSKVSNAMVRN 167


>gi|189424479|ref|YP_001951656.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420738|gb|ACD95136.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 477

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 43/294 (14%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGS 168
           N +A+     F  T   ++   ++ ++    + I+   ++  DR +  +IYE ++R   S
Sbjct: 100 NKRALIIREIFEGTNNYMKNGTVIRQVLNELNQIDF--NSSDDRHIFGDIYETILRDLQS 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV- 227
             + G  +F TPR +    TA++          +P +   + DP CGTGGFLT A+ ++ 
Sbjct: 158 AGNYG--EFYTPRALTEFMTAII----------NPRLGEKVLDPACGTGGFLTCAIENIR 205

Query: 228 -ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             D  +   +  +    HG E +P    + V  M++  +E  P  D + ++ +  T    
Sbjct: 206 RQDVKNVEDLQTLQSTIHGMEFKPLPFMLSVTNMILHDIEV-PNVDYTDSLNREYT---S 261

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +    R    L+NPPFG       D VE            P   + ++ + LFL+ +   
Sbjct: 262 IGAKDRVDVILANPPFGASV---TDGVETNF---------PLNYRTTESADLFLLLMIRY 309

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           L+     GGRAAIVL    L     G G +  IR+  LE   +  IV LP  +F
Sbjct: 310 LK----DGGRAAIVLPDGSL----TGDGVKQRIRQHWLEGCNLHTIVRLPNSVF 355


>gi|10717099|gb|AAG22013.1|AF288037_2 putative HsdM [Streptococcus thermophilus]
          Length = 535

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 145/312 (46%), Gaps = 39/312 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S I+E++I+ +  +      ++ TP  V  +   +L+  D+       G    +++P   
Sbjct: 180 STIFEYMIKDYNKDGGGTYAEYYTPHSVAKIIADILVGNDNPQNVRIYGTHLLVWEPCL- 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
                   MN  +  G           + Q++  ++  +    +++  L+         N
Sbjct: 239 --------MNLASRIGVDKA-----TVYSQDISQKSSNLLRFNLILNGLQHSIH-----N 280

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---S 332
           I +G+T+ ++    ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK     
Sbjct: 281 IVEGNTILRNRHP-EKMDYIVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKTPKSK 337

Query: 333 DGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             SM    LF+ H+   L+      G+AA+VL +   F       + +IR+ L++N ++ 
Sbjct: 338 KNSMAIYELFVQHIIYSLK----SDGQAAVVLPTG--FITAQNGIDKKIRQHLVDNQMLA 391

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ +++ ++
Sbjct: 392 GVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKESKNQKTVLSPEE 447

Query: 449 RRQILDIYVSRE 460
            ++I++ ++ +E
Sbjct: 448 EQKIVETFIQKE 459


>gi|260776598|ref|ZP_05885493.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607821|gb|EEX34086.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
          Length = 510

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 128/311 (41%), Gaps = 54/311 (17%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           V +  + ++YE L+     EV  GA  + TPR +++    L+           P +   +
Sbjct: 124 VKNEGLGDMYEGLLEINAQEVKSGAGQYFTPRVLINAMVELM----------KPTLKDVI 173

Query: 210 YDPTCGTGGFLTDAMNH--------VADCGSH-HKIPPILVPHGQELEPETHAVCVAGML 260
            DP  GTGGFL  A NH        + +  S  +K        G E  P T  + +  M+
Sbjct: 174 VDPAAGTGGFLVSA-NHYMYPDKKKIKELSSKDYKKYQSGTYFGMEFVPMTRRLAMMNMM 232

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +  +   D    +  G TLS +          L+NPPFG K                
Sbjct: 233 LHDIAVN---DDKSGVLFGDTLSNEGKDLPDATLILANPPFGNK---------------- 273

Query: 321 LGRFGPGLPKISD------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
               G G+P   D         L  +HL     L P  GGRAA++L  + LF   +G G+
Sbjct: 274 ---MGGGVPTRDDLEHYTGNKQLAFLHLMYHKILKP--GGRAAVILPDNALF--ESGIGK 326

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTS 433
           + IR  L++   +  I+ LPT +F+   + T +   S     ++ +G+ + +   DL  +
Sbjct: 327 T-IRSDLMDKCNLHTILRLPTGIFYAAGVKTNILFFSKPSDVKKDKGQTKNVWVYDLRAN 385

Query: 434 IRNEGKKRRII 444
           +   GK+  +I
Sbjct: 386 MPKFGKRTTLI 396


>gi|307566324|ref|ZP_07628763.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
 gi|307344901|gb|EFN90299.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
          Length = 301

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 43/307 (14%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +   G       I   +GQE    T+ +    ML+  +    
Sbjct: 1   MLDFACGSGSLLLNVRHEMGTNG-------IGKIYGQEKNITTYNLARMNMLLHGV---- 49

Query: 269 RRDLSKNIQQGSTLSKD------LFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            +D    I  G TL  D      +   K+  F   ++NPPF  +WE  ++      K+  
Sbjct: 50  -KDTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEPKEETA----KDFR 104

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R+G   PK S     FL+H  + L    +G G  AI+L    LF G     E  IR+ 
Sbjct: 105 FSRYGLA-PK-SAADFAFLLHGFHYL----SGDGTMAIILPHGVLFRG---GKEETIRKK 155

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL +D I+A++ LP +LF+ T I   + +L   K   R   +  INA+        +GK+
Sbjct: 156 LLSDDNIDAVIGLPANLFYSTGIPVCILVL---KKCRRTDDILFINASS--EEHYEKGKR 210

Query: 441 RRIINDDQRRQILDIYVSR-ENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           + ++      +I++ Y  R E  +++R   M + +  GY  + + R + +S   +K  LA
Sbjct: 211 QNLLRPKDINKIVETYQFRIEENRYARKVYMREIKDNGY-NLNISRYVNLSKEEEKIDLA 269

Query: 497 RLEADIT 503
            +   + 
Sbjct: 270 EVHRQLV 276


>gi|117921401|ref|YP_870593.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117613733|gb|ABK49187.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 530

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 136/337 (40%), Gaps = 45/337 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  SE   GA  + TPR +++     +           P     + DP  
Sbjct: 146 LGDLYEGLLEKNASETKSGAGQYFTPRVLINSMVRCI----------KPQAGEYIQDPAA 195

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  A  ++     +  +    +         G EL P T  + +   L+  +E D
Sbjct: 196 GTAGFLIAAHEYIKAQPEYDDLSLKQIDFQRYHAYVGVELVPNTRRLALMNCLLHGMEGD 255

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +  G+ L     + K     L+NPPFG              K GE       
Sbjct: 256 D----DGVVHLGNALGNVGQSLKPADVILANPPFGTS------------KGGEASITRDD 299

Query: 328 LP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           L    S+  + FL H+   L+     GGRAA+VL  + LF   AG G ++IRR L++   
Sbjct: 300 LTFDTSNKQLAFLQHIYRNLK----PGGRAAVVLPDNVLF--EAGKG-TDIRRDLMDKCN 352

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNEGKKRRI 443
           +  I+ LPT +F+   + T +   +    +++  + Q        DL T++ + G KR  
Sbjct: 353 LHTILRLPTGIFYAQGVKTNVLFFTKGSAKDKHQQEQCTENVWVYDLRTNMPSFG-KRTP 411

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
            +D+       +Y     G   R     +FG  ++++
Sbjct: 412 FSDNHLAPFEQVYGEHAGGLSPRTEGEYSFGAEQVEI 448


>gi|167627756|ref|YP_001678256.1| N-6 DNA methylase family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597757|gb|ABZ87755.1| N-6 DNA methylase family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 315

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 45/231 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGS 232
           +F TPR +V     ++          +P   +T+YDP  GT GFL DA  H+       +
Sbjct: 10  EFYTPRPLVKAIVDVV----------NPQTGQTVYDPAAGTCGFLIDAYEHMYSKELSTT 59

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---G 289
             K        G+E  P ++ + V  M++  +        S NI + +TL KD+ +    
Sbjct: 60  QLKFLNEETFFGKEKTPLSYVMGVMNMILHGIT-------SPNINKANTLVKDIRSLEEK 112

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLEL 348
            R+   L+NPPFG K               E        P  S+ + +LFL H+   L+L
Sbjct: 113 DRYDIILANPPFGGK---------------EKATIQTNFPIKSNATELLFLQHIYKSLKL 157

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               GGR  +V+    LF  +  +    +++ LLEN  +  IV+LP  +F 
Sbjct: 158 ----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFL 202


>gi|325913562|ref|ZP_08175927.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
 gi|325477141|gb|EGC80288.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
          Length = 606

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 150/366 (40%), Gaps = 47/366 (12%)

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFSSTIARLEKAGL 132
           ++  S  N   +S+++LG     NN    I   S+    +      DFS  I        
Sbjct: 96  ISSASLVNKDGHSMNSLGEV--VNNAMQLIEDQSEQLIGVLPKSYTDFSDEI-------- 145

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++ + F+   L  D +   ++  IYE+ + +F   ++     F TP+ +V +   ++ 
Sbjct: 146 LSELLRIFNNSAL--DEIDGDIIGRIYEYFLNKFAKNIASDDGVFFTPKSLVKMIVNII- 202

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
           +P   +          L DP CG+GG    + + V   G +      +  +GQE      
Sbjct: 203 EPKSGV----------LLDPACGSGGMFIQSGDFVNAAGMNAN--RTMTFYGQEKVEYNA 250

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDA 311
            +C+  M +  L       + K+  + ++   D         Y ++NPPF      DK  
Sbjct: 251 QLCLMNMAVHGLTG-----VIKSGDEANSFYHDAHNLDGCCDYVMANPPFNV----DKVK 301

Query: 312 VEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            E       L    PG+ K   + + + L++ +  + L    N  GRA  V++SS     
Sbjct: 302 AEACESAKRLPFGMPGINKNKEVGNANYLWISYFYSYL----NKKGRAGFVMASSAT--- 354

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            +   +  IR  L++   ++ ++++  + F++  +   LW    RK E  + KV  I+A 
Sbjct: 355 DSQGKDKTIREKLVKTGHVDVMISVGKNFFYKKTLPCSLWFFDKRKAEPIKDKVLFIDAR 414

Query: 429 DLWTSI 434
           + +T +
Sbjct: 415 NYYTVV 420


>gi|304396444|ref|ZP_07378325.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp.
           aB]
 gi|304355953|gb|EFM20319.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp.
           aB]
          Length = 529

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 128/309 (41%), Gaps = 58/309 (18%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL        K  P  I  + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL--------KPQPREI--VQDPAAG 177

Query: 216 TGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           T GFL +A  +V                 +I    V  G EL P T  + +   L+  +E
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDNDTQDFQIHRAFV--GLELVPGTRRLALMNCLLHDIE 235

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +   D    I+ G+TL  D  T    H   +NPPFG                      G
Sbjct: 236 GN--LDHGGAIRLGNTLGSDGETLPMAHVVATNPPFGSA-------------------AG 274

Query: 326 PGLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             + +      S+  + F+ H+   L LP   GGRAA+V+  + LF G  G   ++IRR 
Sbjct: 275 TNITRTFVHPTSNKQLCFMQHIVETL-LP---GGRAAVVVPDNVLFEGGKG---TDIRRD 327

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSN---RKTEERRGKVQLINATDLWTSIRNE 437
           L++   +  I+ LPT +F+   + T +   +     K  + +     +   DL T++ + 
Sbjct: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAKPTQDKNCTDDVWVYDLRTNMPSF 387

Query: 438 GKKRRIIND 446
           GK+    +D
Sbjct: 388 GKRTPFTDD 396


>gi|307748413|gb|ADN91683.1| HsdM [Campylobacter jejuni subsp. jejuni M1]
          Length = 496

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIK-AMVEVIDPKPK---------ERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+   +++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEQEKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|194336313|ref|YP_002018107.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308790|gb|ACF43490.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 544

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 157/326 (48%), Gaps = 40/326 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++++E+LI+ +  +      ++ TP  V  +  ++L+ P+    K +     + YDP+ G
Sbjct: 183 ASLFEYLIKDYNKDSGGKYAEYYTPHAVAKIMASILV-PEVQRGKVTNA---SCYDPSSG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRRDLSK 274
           +G  L   MN     G           + Q++ +  +  + +  +L   + S P      
Sbjct: 239 SGTLL---MNLAHAIGEQR-----CTIYSQDISQKSSSLLRLNLILNNLVHSIP------ 284

Query: 275 NIQQGSTL----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           NI QG+TL     K+    K+F Y +SNPPF   +   ++ ++   ++       P +PK
Sbjct: 285 NIIQGNTLLHPYHKEGKALKKFDYIVSNPPFKMDFSDFRNELDTREQHERFFAGIPNVPK 344

Query: 331 ISDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
            +   M    LFL H+   L+     GG+AA+V+ +  +    A SG + +IR  L++  
Sbjct: 345 QATDKMAIYQLFLQHIIYSLK----PGGKAAVVVPTGFI---TAQSGIDRKIRERLVDGK 397

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++  +V++P+++F  T     +  + +   ++    V LI+A+ L T ++    ++ +++
Sbjct: 398 MLAGVVSMPSNIFATTGTNVSILFIDDGNKDD----VVLIDASSLGTKVKEGKNQKTVLS 453

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDY 470
           +D+   I+  + S+E  + FS +++Y
Sbjct: 454 EDEEDWIITTFNSKEAEEDFSVVVNY 479


>gi|167628749|ref|YP_001679248.1| type i restriction-modification system, m subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167591489|gb|ABZ83237.1| type i restriction-modification system, m subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 478

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 130/302 (43%), Gaps = 45/302 (14%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN-IYEHLIRRFGSEVSEGAEDF 177
           D    +    K+G L +   N    +++ D V    + N IYE +++   S    G  +F
Sbjct: 105 DVMEGVNNFMKSGTLLRQVINKINADINFDEVKTAHLFNGIYESMLKDLQSAGKAG--EF 162

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--VADCGSHHK 235
            TPR V    T  ++D      K +P +   + DP CGTGGFLT  ++   +     +  
Sbjct: 163 YTPRPV----TRFIVD------KVNPQLGEIVLDPACGTGGFLTSVIDRFDIKTADEYRT 212

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +   +   G E +P    +CV  ++   ++      L ++     T + D     +    
Sbjct: 213 LQKTI--RGIEKKPFPFLLCVTNLIAHGIDV----PLIRHDNTLRTPTTDYSLADKVDVI 266

Query: 296 LSNPPFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPFG   EK    +V  E +N E                LFL+H+   L+     GG
Sbjct: 267 VTNPPFGGAEEKAISQSVPAELRNTETAD-------------LFLVHIMALLK----DGG 309

Query: 355 RAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           R  +VL    LF    G+G ++ I++ LLE + +  IV LP D+F   TNI T L   + 
Sbjct: 310 RCGMVLPDGFLF----GTGVKAAIKKKLLEENNLHTIVRLPKDVFAPYTNINTNLLFFTK 365

Query: 413 RK 414
            K
Sbjct: 366 GK 367


>gi|325287952|ref|YP_004263742.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489]
 gi|324323406|gb|ADY30871.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489]
          Length = 499

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 55/265 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE+L++  GS+     E F TPR ++      +++  D    +      T+YD   
Sbjct: 158 LSQVYENLLKSMGSDGGNSGE-FYTPRAII----KAMVETTDIKVGD------TIYDGAV 206

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLIRRLESD 267
           G+GGFL +A + +       K+              GQE     + + +  M++  +E  
Sbjct: 207 GSGGFLVEAFDFLTAGDKKEKLSAKDWETIQNDTFFGQEKTSLGYVMGMMNMILHGIE-- 264

Query: 268 PRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                S N+ +G+TL+   +D     R    L+NPPFG K +K               + 
Sbjct: 265 -----SPNVYKGNTLTQNIRDYQEKDRHDVILANPPFGGKEKK---------------QI 304

Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P  S+ + +LF+ H    L+L     GRAAIV+    LF  +  +  +++++ LLE
Sbjct: 305 QQNFPVESNATEILFMQHFMKMLKLE----GRAAIVVPEGVLF--QTNNAFTKVKQTLLE 358

Query: 384 NDLIEAIVALPTDLFF-----RTNI 403
           N  +  IV+LP+ +F      +TNI
Sbjct: 359 NFNVHTIVSLPSGVFLPYSGVKTNI 383


>gi|148925705|ref|ZP_01809393.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845715|gb|EDK22806.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 494

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIK-AMVEVIDPKPK---------ERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+   +++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEQEKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|281424445|ref|ZP_06255358.1| type I restriction-modification system, M subunit [Prevotella oris
           F0302]
 gi|281401431|gb|EFB32262.1| type I restriction-modification system, M subunit [Prevotella oris
           F0302]
          Length = 473

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 148/376 (39%), Gaps = 68/376 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +           P +  T+ DP 
Sbjct: 129 VKGAIYEGILEKNGQDKKSGAGQYFTPRPLIQAIVDCV----------QPKIGETVCDPA 178

Query: 214 CGTGGFLT---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL    D M   +      +       HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDCMKQQSQDKDKREFLNNKALHGVDNTPLVVTLASMNLYLHGIGTD--- 235

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
                I    +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 236 --RSPIACEDSLEKEPDT--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF G  G+GE+ IR+ LL +  
Sbjct: 288 -----------FLQHIMLMLK----AGGRAAVVLPDNVLFEG--GAGET-IRKKLLSDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+ +  + T+            D+W        K  +  
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFVKGQPTK------------DIWFYDYRTDVKHTLAT 377

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL--DKTGLARLEADIT 503
           +  RR  LD +V+       R+  Y+    R  +  R   +  I+  DKT L     DIT
Sbjct: 378 NKLRRHHLDDFVASYTAN-PRVETYKEDTARDGR-WRKYTVEDIIARDKTSL-----DIT 430

Query: 504 WRKLSPLHQSFWLDIL 519
           W K     + F LD L
Sbjct: 431 WIKAGGEEEQFTLDEL 446


>gi|146318349|ref|YP_001198061.1| HsdM [Streptococcus suis 05ZYH33]
 gi|146320544|ref|YP_001200255.1| HsdM [Streptococcus suis 98HAH33]
 gi|145689155|gb|ABP89661.1| putative HsdM [Streptococcus suis 05ZYH33]
 gi|145691350|gb|ABP91855.1| putative HsdM [Streptococcus suis 98HAH33]
          Length = 299

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 22/194 (11%)

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           NI QG+T+  +    ++  Y +SNPPF   + + +D VE    + E  RF  G+PKI + 
Sbjct: 44  NIVQGNTILNNRHV-EKMDYIVSNPPFKLDFSEWRDQVESLPNSSE--RFFAGVPKIPNK 100

Query: 335 S-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
                    LF+ H+ + L+      G+AAIVL +  +    A SG + +IR+ L++  +
Sbjct: 101 KKESMAIYQLFIQHIIHSLK----EDGQAAIVLPTGFI---TAQSGIDKKIRQHLVDEKM 153

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  +V++P+++F  T     +  +  +  ++    V LI+A++L T ++    ++ +++ 
Sbjct: 154 LAGVVSMPSNIFATTGTNVSILFIDKKNKDD----VVLIDASNLGTKVKEGKNQKTVLSP 209

Query: 447 DQRRQILDIYVSRE 460
           D+  QI+  ++++E
Sbjct: 210 DEESQIIQTFINKE 223


>gi|187939950|gb|ACD39086.1| type I restriction-modification system methyltransferase subunit
           [Pseudomonas aeruginosa]
          Length = 527

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 59/291 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE+L+ +  +    G   F TPR ++     L+          +P     + DP 
Sbjct: 150 VKGDIYEYLLSKLTTAGING--QFRTPRHIIDAMIELI----------APQPTEVICDPA 197

Query: 214 CGTGGFLTDAMNHVA------------DCGSHHKIPPILVPHGQELEPETH--------- 252
           CGT GFL   M ++             + G+ H    +L P+ Q +  +           
Sbjct: 198 CGTAGFLARTMEYLNRVHSSPEGTFSDEDGNRHYSGDLLEPYRQHINSQMFWGFDFDTTM 257

Query: 253 -AVCVAGMLIRRLESDPRR---DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             V    M++  +     R    LSK+I++     +  F    F   L+NPPF       
Sbjct: 258 LRVSSMNMMLHGVNGANIRYQDSLSKSIKEHYPRQEQNF----FDVVLANPPF------- 306

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K ++++ + N ++     GL K     +LF+ H+   L+L    GGR+A+++    +F  
Sbjct: 307 KGSLDETNTNPDV----LGLVKTKKTELLFVAHILRSLKL----GGRSAVIVPDGVVFG- 357

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
            +     ++R+ LL+N+ +E IV+LP+ +F     ++T + I +   T ER
Sbjct: 358 -SSKAHQQLRQELLDNNQLEGIVSLPSGVFKPYAGVSTAILIFTKGGTTER 407


>gi|320321658|gb|EFW77757.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 494

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 112/261 (42%), Gaps = 50/261 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N+YE L+R      + G  +F TPR V     +++           P +   L DP CGT
Sbjct: 146 NLYEQLLRDLQEAGNAG--EFYTPRPVTEFMVSMV----------DPKLDEKLMDPACGT 193

Query: 217 GGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GGFLT  + H     V        +   +   G E +P  H +    M++  +E      
Sbjct: 194 GGFLTCTIEHKRSRYVKTAEDERTLQASIF--GVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLSK L +    +R H  ++NPPFG     ++D +E            P  
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNF---------PAA 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
            +  + + LFL+ +   L+      GRAA+VL    +F    G G +S I+  LL    +
Sbjct: 294 FRTRETADLFLVLIMQLLK----DNGRAAVVLPDGFMF----GDGIKSRIKEKLLTECNL 345

Query: 388 EAIVALPTDLFF-RTNIATYL 407
             IV LP  +F   T IAT L
Sbjct: 346 HTIVRLPKGVFNPYTPIATNL 366


>gi|298384307|ref|ZP_06993867.1| type I restriction-modification system, M subunit [Bacteroides sp.
           1_1_14]
 gi|298262586|gb|EFI05450.1| type I restriction-modification system, M subunit [Bacteroides sp.
           1_1_14]
          Length = 472

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 145/361 (40%), Gaps = 66/361 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDYMKVQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+E            +W        K  +  
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE------------IWFYDYRTDVKHTLAT 377

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   R  LD ++S  N +            R  K   P+    + DKT L     DITW 
Sbjct: 378 NKLERHHLDDFISCYNNRVETYDAENNPQGRWRKY--PIEDILVRDKTSL-----DITWI 430

Query: 506 K 506
           K
Sbjct: 431 K 431


>gi|295692968|ref|YP_003601578.1| type i restriction-modification enzyme, m subunit [Lactobacillus
           crispatus ST1]
 gi|295031074|emb|CBL50553.1| Type I restriction-modification enzyme, M subunit [Lactobacillus
           crispatus ST1]
          Length = 485

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 136/330 (41%), Gaps = 46/330 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++     + K   L KI K+  G++    +  D  + ++YE L+ +  +EV  GA  + T
Sbjct: 92  YADASTSIHKPASLEKIIKDIDGLDWW--SARDEGLGDLYEGLMEKNANEVKSGAGQYFT 149

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++++   +            P +     DP  GT GF+  A  ++ D    +     
Sbjct: 150 PRVLINMMVRMT----------RPKLGDRCNDPAAGTFGFMVAADQYLKDKNDDYSSLSE 199

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL   TH + +    +  +           ++ G +LS +    K 
Sbjct: 200 EKGEFQVNEAFSGMELVETTHRLALMNQYLHGMNG--------RLELGDSLSANGNWMKN 251

Query: 292 FHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   L+NPPFG K   D D A  ++    E           S+  + FL  + N L+   
Sbjct: 252 FDVVLTNPPFGTKKGIDNDKAASRDDITFE----------TSNKQLNFLQIIYNSLK--H 299

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +G  RAA+V+  + LF    G     IR+ LL    +  I+ LPT +F+   + T +   
Sbjct: 300 DGKARAAVVVPDNVLFADSVGEA---IRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFF 356

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +  ++++   K   I   D+   +R+ GK+
Sbjct: 357 TRGESDKDNTKETWI--YDMRHQMRSFGKR 384


>gi|288560185|ref|YP_003423671.1| type I restriction-modification system M subunit HsdM
           [Methanobrevibacter ruminantium M1]
 gi|288542895|gb|ADC46779.1| type I restriction-modification system M subunit HsdM
           [Methanobrevibacter ruminantium M1]
          Length = 634

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 137/318 (43%), Gaps = 49/318 (15%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +F    S+ A DF TP DV  L + L+     A        I ++YDP CG+  
Sbjct: 296 FEYLLDKFSLNASKSA-DFYTPNDVSVLVSKLVATNKRA--------IDSVYDPCCGSSS 346

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +   HV+          + +  GQE+    + +    M++  +     +D   +I+Q
Sbjct: 347 MLLELNKHVS----------LNLICGQEVNAYYYNISRQNMILHNIHF---KDF--DIKQ 391

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G +L      G  +F   +S  PF   W   K  +  +        +    P++      
Sbjct: 392 GDSLDSPHHIGYDKFDVVVSQIPFNVSWTAKKSFLNDQR----FKEYNALAPRVK-AEYA 446

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTD 396
           F+ H+   L+      G   ++     LF  R+ S ES IR+ ++   + ++A++ LP++
Sbjct: 447 FIQHMLYHLD----DDGIMVVIAPHGVLF--RSASEES-IRKIIVSKMNYLDAVIGLPSN 499

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI--RNEGKKRRIINDDQRRQILD 454
           +F+ TN    + I   +K       V  I+A+  +  I  RN  +K  I       +I+ 
Sbjct: 500 MFYSTNSPACVLIF--KKNRRYDDDVLFIDASKNFNKIKLRNNLRKEDI------NKIVG 551

Query: 455 IYVSR-ENGKFSRMLDYR 471
            YVSR E  K+SR +  R
Sbjct: 552 TYVSRAEVDKYSRRVSLR 569


>gi|261416114|ref|YP_003249797.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372570|gb|ACX75315.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327814|gb|ADL27015.1| putative type I restriction-modification system, M subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 481

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 55/275 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           MS++YE  IRR G+    G E + TPR ++     ++           P +  T+ DP C
Sbjct: 157 MSHLYEDKIRRMGNAGRNGGE-YYTPRPLIRTIVRII----------DPKIGETVLDPAC 205

Query: 215 GTGGFLTDA-------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           G+ GFL +A       +  VAD  +  K       +GQE +   + + +  M++  +   
Sbjct: 206 GSAGFLCEAYAYMKQKVKSVADRETLQK----KTFYGQEKKGLAYIIGIMNMILHGVN-- 259

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                + NI   +TLS+++   +   R    ++NPPFG K               E    
Sbjct: 260 -----APNILHTNTLSENMANVEQKMRKDVIIANPPFGGK---------------ERAEV 299

Query: 325 GPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P K S+ + LF+ +    L+     GGRA IV+ ++ L N    S    +R+ LLE
Sbjct: 300 QQNFPIKTSETAYLFMQYFVKLLK----AGGRAGIVIKNTFLSNTDNAS--VMLRKELLE 353

Query: 384 NDLIEAIVALPTDLFFRTNIAT-YLWILSNRKTEE 417
           N  +  I+ LP+ +F    + T  L+    R TE+
Sbjct: 354 NCDLHTILDLPSGVFTGAGVKTVVLFFEKGRPTEK 388


>gi|78188778|ref|YP_379116.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Chlorobium chlorochromatii CaD3]
 gi|78170977|gb|ABB28073.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Chlorobium chlorochromatii CaD3]
          Length = 486

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 120/264 (45%), Gaps = 45/264 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G + + TPR ++     ++          +P +   +YD  C
Sbjct: 158 LSHLYETKIKNMGNAGRNGGQ-YYTPRPLIRAIINVV----------NPQIGEKVYDAAC 206

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++ +      ++ K       +G+E +   + + V  M++  +E+    
Sbjct: 207 GSAGFLCEAYSYMYERMEKTTTNLKTLQENTFYGKEKKNLAYIIGVMNMILHGIEA---- 262

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL+   +D+    R+H  L+NPPFG K  K+        +N ++      
Sbjct: 263 ---PNIFHTNTLTENIRDIQEKDRYHVILANPPFGGKERKEV------QQNFDI------ 307

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K  + + LFL H    L+     GGRA IV+ ++ L N  A +    +R+ LLE+  +
Sbjct: 308 --KTGETASLFLQHFIKSLK----AGGRAGIVIKNTFLSN--ADNASVSLRKHLLESCNL 359

Query: 388 EAIVALPTDLFFRTNIATYLWILS 411
             I+ +P   F    + T +   +
Sbjct: 360 HTILDMPAGTFLGAGVKTVVLFFT 383


>gi|332289273|ref|YP_004420125.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330432169|gb|AEC17228.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 539

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 133/316 (42%), Gaps = 51/316 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +++    L++   L +I K F  ++    ++    + ++YE L+ +  +E   GA  + T
Sbjct: 106 YANASTSLKEPKHLEQIIKAFDAMDWF--SMQKDGLGDLYEGLLEKNATETKSGAGQYFT 163

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-------ADCGS 232
           PR ++++    +           P +   + DP  GT GFL  A  +V        D G 
Sbjct: 164 PRALINVMVRCI----------QPKVGEIVQDPAAGTAGFLIAADQYVRHQSDDYLDLGD 213

Query: 233 HH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFT 288
              K    +   G EL   T  + +   L+  +E          + QG+TL    KDL  
Sbjct: 214 EERKFQNEVAFQGVELVENTRRLALMNCLLHGIEGGEE----GAVIQGNTLGSAGKDLPN 269

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLE 347
               +  L+NPPFG              K GE       L  + S+  + FL H+   L+
Sbjct: 270 A---NVILANPPFGSS------------KGGEAAITRDDLTFETSNKQLAFLQHIYRNLQ 314

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRAA+VL  + LF    G   +EIR+ L+    +  I+ LPT +F+   + T +
Sbjct: 315 ----EGGRAAVVLPDNVLFEANKG---TEIRQDLMSKCNVHTILRLPTGIFYAQGVKTNV 367

Query: 408 WILSNRKTEERRGKVQ 423
            +  N+ T+ +   V+
Sbjct: 368 -LFFNKATQSQTISVK 382


>gi|47779389|gb|AAT38618.1| predicted HsdM [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 475

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 129/299 (43%), Gaps = 50/299 (16%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E   +L  +     GIE    +  D  +S++YE  I++ G+  +   + + TPR +++ 
Sbjct: 124 VESGNILRDVLDEIDGIEFFKSSESDE-LSDLYEESIKQMGNSGTSAGQ-YYTPRPLINS 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVP 242
               +          +P +  T+ DP CG+GGFL     H+ +          I      
Sbjct: 182 IVKAV----------NPTLGETVLDPACGSGGFLISTFEHILNKKELTAKEFNILQKDTV 231

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNP 299
            GQE      A+ +  M++  +E       + NI + +TLS    DL    R    ++NP
Sbjct: 232 LGQEKIGIPFAIGIMNMIMHGIE-------TPNIIRDNTLSTNTLDLQDKDRVDVIVANP 284

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG          E+E              + S+ + LF+ +   KL++    GGRA ++
Sbjct: 285 PFG--------GSEREEIKSNFA------IQSSETAYLFMQYFLKKLKI----GGRAGLI 326

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY-LWILSNRKTEE 417
           + ++ L N  A S    +R+ LL+   +  IV LP  +F  T + T  L+    +KT++
Sbjct: 327 IKNTFLSNPDAAS----LRQLLLKECNLHTIVDLPK-VFGTTGVQTVALFFEKGKKTKD 380


>gi|94995116|ref|YP_603214.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548624|gb|ABF38670.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 267

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 22/201 (10%)

Query: 273 SKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           ++++    TL  D  T +   F   L NPP+  KW     A      +     +G   PK
Sbjct: 15  NQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWS----ATAGFLTDPRFSSYGVLAPK 70

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 71  -SKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 122

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +    ++GK +  + D   +
Sbjct: 123 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF----DKGKNQNTMTDSHIK 175

Query: 451 QILDIYVSRENG-KFSRMLDY 470
           +ILD Y SR+N  KFS +  +
Sbjct: 176 KILDAYKSRDNSDKFSYLASF 196


>gi|253569705|ref|ZP_04847114.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840086|gb|EES68168.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
           +  I+ LPT +F+   + A  L+    + T+E
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE 361


>gi|57238568|ref|YP_179699.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni RM1221]
 gi|19881230|gb|AAM00841.1|AF486549_3 HsdM [Campylobacter jejuni]
 gi|57167372|gb|AAW36151.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni RM1221]
 gi|315059002|gb|ADT73331.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Campylobacter jejuni subsp. jejuni S3]
          Length = 494

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIK-AMVEVIDPKPK---------ERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++S        NI + +TL+K   D+   +++   L+NPPFG K        EKE     
Sbjct: 263 VKS-------PNIIKTNTLNKKITDITQSEKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|29349926|ref|NP_813429.1| putative type I restriction enzyme StySJI M protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|81842076|sp|Q89Z59|T1M_BACTN RecName: Full=Probable type I restriction enzyme BthVORF4518P M
           protein; Short=M.BthVORF4518P
 gi|29341837|gb|AAO79623.1| putative type I restriction enzyme M.BthVORF4518P [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
           +  I+ LPT +F+   + A  L+    + T+E
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE 361


>gi|294668323|ref|ZP_06733426.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309641|gb|EFE50884.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 457

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 141/304 (46%), Gaps = 51/304 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+        G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PEGV-----RGKIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSLN------- 271

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 272 --NVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLEGE-ENRE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI            LF+ H+   L+      G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKAKDTDKMEIYQLFIQHILFSLKEK----GKAAIVLPTGFI---TAQSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+EN ++  +V++P+++F  T     +  +     +  + KV LI+A+ L   I+ +G
Sbjct: 379 EYLVENKMLAGVVSMPSNIFATTGTNVSILFID----KANKDKVVLIDASGLGEKIK-DG 433

Query: 439 KKRR 442
           K ++
Sbjct: 434 KNQK 437


>gi|77164668|ref|YP_343193.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|76882982|gb|ABA57663.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
          Length = 238

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 21/171 (12%)

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +F   ++NPPF   KW  D      E +     RF  GLP  S G   F+ H+   +E  
Sbjct: 2   KFDNVVANPPFSLDKWGAD------EAEGDIYNRFWRGLPPKSKGDYAFISHM---IEAA 52

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+V     LF G A   E  IRR L+E++L++A++ LP +LF  TNI   + I
Sbjct: 53  VAKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILI 109

Query: 410 LSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
               +      E R +V  I+A++ + S    GK +  + D    +I+ +Y
Sbjct: 110 FDCSREKGGVNEARKEVFFIDASNEYQS----GKNQNTLGDAHIHRIIQVY 156


>gi|212691149|ref|ZP_03299277.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855]
 gi|237712399|ref|ZP_04542880.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           9_1_42FAA]
 gi|212666381|gb|EEB26953.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855]
 gi|229453720|gb|EEO59441.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           9_1_42FAA]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
           +  I+ LPT +F+   + A  L+    + T+E
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE 361


>gi|225376200|ref|ZP_03753421.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM
           16841]
 gi|225211846|gb|EEG94200.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM
           16841]
          Length = 549

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 147/325 (45%), Gaps = 38/325 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTC 214
           + I+E+LI+ +  +  + AE + TP  +  +   +++         S G+   T+YDP  
Sbjct: 184 ATIFEYLIKDYNKDFGKYAE-YYTPHSIASIIARIMV---------SEGVQNVTVYDPAA 233

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  +    + + +         I     + L        +   L   +  D       
Sbjct: 234 GSGTLVLALAHEIGESNCTIYTQDISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQH 293

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKI- 331
             +Q + L K       F Y +SNPPF   +  ++D +      G++   RF  G+P + 
Sbjct: 294 LNRQKNGLMK-------FDYIVSNPPFNVDFSDNRDTLA-----GDIYKERFWAGVPNVP 341

Query: 332 ---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
               D   ++ M L + +      GGRAA+V+ +  L    AG+G   +IR  ++E+ ++
Sbjct: 342 NKKKDSMAIYQMFLQHIIFSMKENGGRAAVVVPTGFL---TAGTGIPKKIRERIVEDRML 398

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IIND 446
             +V++P+++F  T     +  L N K  E+     L++A+ L T ++ +GK +R +++ 
Sbjct: 399 RGVVSMPSNIFATTGTNVSVLFLDNSKKYEQ---AILMDASKLGTKVKVDGKNQRTVLSP 455

Query: 447 DQRRQILDIYVSRE-NGKFSRMLDY 470
           ++   I++ + + E    FS ++DY
Sbjct: 456 EEIEDIINTFNNFEPKDDFSVVVDY 480


>gi|254433647|ref|ZP_05047155.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|207089980|gb|EDZ67251.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 244

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 21/171 (12%)

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +F   ++NPPF   KW  D      E +     RF  GLP  S G   F+ H+   +E  
Sbjct: 8   KFDNVVANPPFSLDKWGAD------EAEGDIYNRFWRGLPPKSKGDYAFISHM---IEAA 58

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+V     LF G A   E  IRR L+E++L++A++ LP +LF  TNI   + I
Sbjct: 59  VAKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILI 115

Query: 410 LSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
               +      E R +V  I+A++ + S    GK +  + D    +I+ +Y
Sbjct: 116 FDCSREKGGVNEARKEVFFIDASNEYQS----GKNQNTLGDAHIHRIIQVY 162


>gi|261867041|ref|YP_003254963.1| hypothetical protein D11S_0333 [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412373|gb|ACX81744.1| hypothetical protein D11S_0333 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 534

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 153/323 (47%), Gaps = 52/323 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--LYDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P D       G IR+  +YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PQDV-----RGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           + G+G  L +  + + +  C          + + Q++  ++  +    +++  L      
Sbjct: 223 SAGSGTLLMNVAHAIGEDKC----------MIYTQDISQKSSNLLRLNLVLNNLVHSLN- 271

Query: 271 DLSKNIQQGSTL----SKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
               N+ QG+T+     KD +   K+F + +SNPPF   +   +D ++   +N E  RF 
Sbjct: 272 ----NVIQGNTILSPYHKDKVGRLKKFDFIVSNPPFKLDFSDFRDQLDSA-ENRE--RFF 324

Query: 326 PGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEI 377
            G+PKI            LF+ H+     L  N  G+A+IVL +  +    A SG + +I
Sbjct: 325 AGIPKIKAKDKDKMEIYQLFIQHIL--FSLKEN--GKASIVLPTGFI---TAQSGIDRKI 377

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R +L+EN +   +V++P+++F  T     +  +     +  + +V LI+A+ L   I++ 
Sbjct: 378 REYLVENKMFAGVVSMPSNIFATTGTNVSILFID----KANKDQVVLIDASGLGEKIKDG 433

Query: 438 GKKRRIINDDQRRQILDIYVSRE 460
             ++ +++ ++ ++I   +  ++
Sbjct: 434 KNQKTVLSREEEQKICQTFTDKQ 456


>gi|237726589|ref|ZP_04557070.1| type I restriction enzyme StySJI M protein [Bacteroides sp. D4]
 gi|265752107|ref|ZP_06087900.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           3_1_33FAA]
 gi|229435115|gb|EEO45192.1| type I restriction enzyme StySJI M protein [Bacteroides dorei
           5_1_36/D4]
 gi|263236899|gb|EEZ22369.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           3_1_33FAA]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
           +  I+ LPT +F+   + A  L+    + T+E
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE 361


>gi|19881250|gb|AAM00858.1|AF486552_4 HsdM [Campylobacter jejuni]
          Length = 494

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIK-AMVEVIDPKPK---------ERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++S        NI + +TL+K   D+   +++   L+NPPFG K        EKE     
Sbjct: 263 VKS-------PNIIKTNTLNKKITDITQSEKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|150006642|ref|YP_001301386.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|294775332|ref|ZP_06740854.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|149935066|gb|ABR41764.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|294450789|gb|EFG19267.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 472

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAIVDCI----------NPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
           +  I+ LPT +F+   + A  L+    + T+E
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE 361


>gi|293393085|ref|ZP_06637400.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM
           4582]
 gi|291424231|gb|EFE97445.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM
           4582]
          Length = 529

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 145/368 (39%), Gaps = 73/368 (19%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +   E+YL  G    DL+S +      FY               RN L    A      +
Sbjct: 43  TGQEEEYLPVGYRWDDLKSRIGQEQLQFY---------------RNLLVHLGADEQKLVQ 87

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEV 170
           A+F+  +  +TI + ++   L ++  N   ++ +   D        ++YE L+++  +E 
Sbjct: 88  AVFQSVN--TTITQPKQ---LTELVSNMDSLDWYNGSDGKSRDDFGDMYEGLLQKNANET 142

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
             GA  + TPR ++     LL        K  P  I  + DP  GT GFL +A  +V   
Sbjct: 143 KSGAGQYFTPRPLIKTIVHLL--------KPQPREI--VQDPAAGTAGFLIEADRYVKSQ 192

Query: 231 --------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                   G            G EL P T  + +   L+  +E +   D    I+ G+TL
Sbjct: 193 TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN--LDHGGAIRLGNTL 250

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-----ISDGSML 337
             D     + H  ++NPPFG                      G  + +      S+  + 
Sbjct: 251 GSDGENLPQAHVVMTNPPFGSA-------------------AGTNITRTFVHPTSNKQLC 291

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ H+   L      GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +
Sbjct: 292 FMQHIIETLR----PGGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGI 344

Query: 398 FFRTNIAT 405
           F+   + T
Sbjct: 345 FYAQGVKT 352


>gi|153808177|ref|ZP_01960845.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185]
 gi|149129080|gb|EDM20296.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185]
          Length = 472

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 143/361 (39%), Gaps = 66/361 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +           P M  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------HPQMGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++    +  +    L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGVGTDRSP 238

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 239 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF   AG+GE+ IR+ LL +  
Sbjct: 288 -----------FLQHMMLTLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLRDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+E            +W        K  +  
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE------------IWFYDYRTDIKHTLAT 377

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   R  LD +VS  N +            R  K   P+    + DKT L     DITW 
Sbjct: 378 NKLERHHLDDFVSCYNNRVETYDAENNPQGRWRKY--PVHEIIVRDKTSL-----DITWI 430

Query: 506 K 506
           K
Sbjct: 431 K 431


>gi|197104449|ref|YP_002129826.1| type I restriction-modification system, M subunit [Phenylobacterium
           zucineum HLK1]
 gi|196477869|gb|ACG77397.1| type I restriction-modification system, M subunit [Phenylobacterium
           zucineum HLK1]
          Length = 485

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 143/339 (42%), Gaps = 59/339 (17%)

Query: 68  DLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           D E     A  SF N   + +L  L  T  R +    +       +++FED         
Sbjct: 69  DREGMTGDALLSFINNELFPALKNLPITGPRRHRAIVV-------RSVFED-----AYNY 116

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++    L K+      ++ + D    +   +IYE L+    S  + G  ++ TPR V   
Sbjct: 117 MKSGHQLRKVVNKIDDVDFN-DLSERQHFGDIYEQLLNDLQSAGNAG--EYYTPRAV--- 170

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---H 243
            TA + D  D      PG I  L+DP CGTGGFLT AM H+ +          L+     
Sbjct: 171 -TAFMTDRIDP----KPGEI--LFDPACGTGGFLTCAMRHMRERYVKRPEDEALMQASLR 223

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPP 300
             E +P  H + V  ML+  +E DP       ++  +TL++   +     R    L+NPP
Sbjct: 224 AVEKKPLPHMLAVTNMLLHGVE-DP-----SFLRHDNTLARPYISWGQSDRVDIVLTNPP 277

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG    +++D +E            P   +  + + LFL  +   L+     GGRAA+VL
Sbjct: 278 FGG---QEEDGIETNF---------PAHFRTRETADLFLALIVRLLK----PGGRAAVVL 321

Query: 361 SSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
               LF    G G ++ ++  L+E   +  IV LP  +F
Sbjct: 322 PDGTLF----GEGMKTRLKEHLMEECNLHTIVRLPNSVF 356


>gi|19881269|gb|AAM00874.1|AF486555_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKSKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|282932148|ref|ZP_06337601.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281303727|gb|EFA95876.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 203

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 21/157 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE+ +++F S   +   +F TPR VV     ++ +P    FK       T+YDP 
Sbjct: 51  ILGRVYEYFLQKFASNEKKNGGEFYTPRSVVKTLVEMV-EP----FK------GTVYDPC 99

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +   H      L  +GQE  P T  +    + IR +      D +
Sbjct: 100 CGSGGMFVQSEQFVQE---HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNN 150

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDK 309
               Q  T + DL  G  F Y L+NPPF  KKW  +K
Sbjct: 151 FGAHQADTFTNDLHKGTHFDYILANPPFNVKKWGGEK 187


>gi|88812208|ref|ZP_01127459.1| Putative restriction modification enzyme M subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790459|gb|EAR21575.1| Putative restriction modification enzyme M subunit [Nitrococcus
           mobilis Nb-231]
          Length = 483

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 57/292 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDF 177
           F+     ++   LL ++     +GI+ H  +  +R ++ +IYE +++   S  + G  +F
Sbjct: 110 FADAFNYMKNGTLLRQVVNRIEAGIDFH--SAKERHLLGDIYEQILKDLQSAGNAG--EF 165

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR V    T  ++D  D      P +   + DP CGTGGFLT  + H+      H + 
Sbjct: 166 YTPRAV----TQFMVDIID------PQLGEQVMDPACGTGGFLTCTVEHI----RKHYVQ 211

Query: 238 PILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLF 287
            +           G E +   H +C   ML+  LE   R      I+  +TL+   +D  
Sbjct: 212 TVAAEATLQEQVQGFEKKQLPHLLCTTNMLLHGLEVPTR------IRHDNTLARPLRDWG 265

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +R    L+NPPFG     ++D  E            P   +  + + LFL  +   L+
Sbjct: 266 PRERVDAVLTNPPFGG---MEEDGTELNF---------PQATRTRETADLFLQLVIQILK 313

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
             PN  GRAAIVL    LF    G G +++I+  LL    +  IV LP  +F
Sbjct: 314 --PN--GRAAIVLPDGTLF----GEGVKTKIKEKLLTECNLHTIVRLPNGVF 357


>gi|298346416|ref|YP_003719103.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236477|gb|ADI67609.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 646

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 135/331 (40%), Gaps = 73/331 (22%)

Query: 152 DRVMSNI-----YEHLIRRF-GSEVSEGAED------FMTPRDVVHLATALL-LDPDDAL 198
           +RV  NI      E  I RF G  +S    D       +TPR +  L   LL +  DD +
Sbjct: 294 ERVFKNIKYQKTSEDFIGRFYGEFMSYSGGDGQTLGIILTPRHITDLMCELLDIKIDDVV 353

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVC 255
                       DPTCGTGGFL  AM+    +AD     K       HG EL+    AV 
Sbjct: 354 L-----------DPTCGTGGFLISAMHRMLSMADTDVQRKSIKKKQLHGFELQSNMFAVA 402

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVE 313
            A M++       R+D + N++    L K+      K     L NPP+ +  + D +  E
Sbjct: 403 AANMIL-------RKDGNSNLECCDFLRKNTAQVQLKGATVGLMNPPYSQGTKADTEQYE 455

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                                 + F+ HL + L +    G RAA+++  S +  G++   
Sbjct: 456 ----------------------LSFIEHLLDSLTV----GARAAVIVPQSSM-TGKS-KA 487

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E + +  +L+   +E ++   ++ F+   +   + I +  +  ++R   + I+  D    
Sbjct: 488 EKQFKNSILDKHTLEGVITCNSETFYGVGVNPVIAIFTANEKHDKRKVCKFIDFRDDGYE 547

Query: 434 IRN-----EGKKRRIINDDQRRQILDIYVSR 459
           +R      EG   +    D+R+ +LD++  R
Sbjct: 548 VRAHVGLLEGDSAK----DKRQHLLDVWFGR 574


>gi|304409997|ref|ZP_07391616.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|307302290|ref|ZP_07582048.1| N-6 DNA methylase [Shewanella baltica BA175]
 gi|304351406|gb|EFM15805.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|306914328|gb|EFN44749.1| N-6 DNA methylase [Shewanella baltica BA175]
          Length = 640

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 131/296 (44%), Gaps = 62/296 (20%)

Query: 144 ELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           E++ D V D+    +S +YE L+ + G + S+G + F TPR+V+      +         
Sbjct: 186 EINIDHVDDQHFFTLSQVYEDLLLKMGEKNSDGGQ-FFTPREVIRAMVHTV--------- 235

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPH----GQELEPETHAV 254
             P + +T+YDP CGTGGFL  A  H+A           L  + H    G+E E     +
Sbjct: 236 -KPELGQTVYDPCCGTGGFLAIAYEHIARQLGQSPTSTDLDTLKHDTFFGREKENLVFPI 294

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSK-----DLF--TGKRFHYCLSNPPFGKKWEK 307
            +A +++  ++         N+  G++L++      LF     +F   L+NPPFG K  K
Sbjct: 295 ALANLVLHGID-------QPNLWHGNSLTRRATYAGLFEQAPTQFDVILTNPPFGGKEGK 347

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D        KN           + S   +LF+  +    EL P   G  AIVL    LF 
Sbjct: 348 DA------QKNFAF--------ETSSTQVLFVQDIL--AELAPK--GTCAIVLDEGLLFR 389

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF------FRTNIATYLWILSNRKTEE 417
               S   E +R L++   + AI++LP  +F       +TN+   L+    +KTE+
Sbjct: 390 TNE-SAFVETKRKLVDECDLWAILSLPGGVFSTAGAGVKTNL---LFFTKGKKTEK 441


>gi|167461218|ref|ZP_02326307.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381544|ref|ZP_08055522.1| type I restriction-modification system methyltransferase
           subunit-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154502|gb|EFX46800.1| type I restriction-modification system methyltransferase
           subunit-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 485

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 132/308 (42%), Gaps = 48/308 (15%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   +  + +  +     I ++    +L KI     GI++           +
Sbjct: 89  NGIFPFIKNLHQDGDSAYSKY-MEDAIFKIPTPQMLTKIVDGIDGIDMEKRDAK----GD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +    G   F TPR ++ +   L+        K SP  +  + DP  G+ 
Sbjct: 144 LYEYLLSKVATAGMNGQ--FRTPRHIIEMMVRLM--------KPSPSDV--IADPAMGSA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  +V +  +   +   L  H       G +++     +    ML+  ++     
Sbjct: 192 GFLVAAQEYVKEHHADLFLHAGLKKHFNQDMFYGFDMDRTMLRIGAMNMLLHGVDQ---- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               NI+   +LS+     +++   L+NPPF  K   D DAV K+            + K
Sbjct: 248 ---PNIEYKDSLSEQNGDQEKYTMILANPPF--KGSLDYDAVSKDLLK---------ITK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L+L    GGR+A ++  S LF   +     EIR+ L++N  +EA+
Sbjct: 294 TKKTELLFLALILRSLKL----GGRSATIVPDSVLFG--SSKAHKEIRKELVDNHKLEAV 347

Query: 391 VALPTDLF 398
           +++P+ +F
Sbjct: 348 ISMPSGVF 355


>gi|146279551|ref|YP_001169709.1| EcoEI R domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557792|gb|ABP72404.1| EcoEI R, C-terminal domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 481

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 58/297 (19%)

Query: 112 KAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           + +FED ++F      ++   LL ++    +G++ + +    +   +IYE L+    +  
Sbjct: 104 RDVFEDAYNF------MKSGQLLRQVINKINGVDFN-NLTERQHFGDIYEQLLNDLQNAG 156

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           + G  ++  PR V    TA ++   D      PG I  L DP CGTGGFLT AM H+ D 
Sbjct: 157 NAG--EYYDPRAV----TAFMVQQIDP----RPGEI--LMDPACGTGGFLTCAMRHMRD- 203

Query: 231 GSHHKIPP-----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             H ++P             E +P  H +CV  ML+  +E          ++  +TL++ 
Sbjct: 204 -RHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVEE------PHFVRHDNTLARP 256

Query: 286 LFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           L +    +R    L+NPPFG    K++D +E                +  + + LFL  +
Sbjct: 257 LTSWSRDERVDIVLTNPPFGG---KEEDGIENNFPTF----------RTRETADLFLALI 303

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
              L+     GGRAA+VL    LF    G G ++ ++  L+    +  IV LP  +F
Sbjct: 304 IRLLK----PGGRAAVVLPDGSLF----GEGIKTRLKEHLMAECNLHTIVRLPNSVF 352


>gi|330941027|gb|EGH43949.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 494

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 111/261 (42%), Gaps = 50/261 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N+YE L+R      + G  +F TPR V      ++           P +   L DP CGT
Sbjct: 146 NLYEQLLRDLQEAGNAG--EFYTPRPVTEFMVRMV----------DPKLDEKLMDPACGT 193

Query: 217 GGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GGFLT  + H     V        +   +   G E +P  H +    M++  +E      
Sbjct: 194 GGFLTCTIEHKRSRYVKTAEDERTLQASIF--GVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLSK L +    +R H  ++NPPFG     ++D +E            P  
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNF---------PAA 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
            +  + + LFL+ +   L+      GRAA+VL    +F    G G +S I+  LL    +
Sbjct: 294 FRTRETADLFLVLIMQLLK----DNGRAAVVLPDGFMF----GDGIKSRIKEKLLTECNL 345

Query: 388 EAIVALPTDLFF-RTNIATYL 407
             IV LP  +F   T IAT L
Sbjct: 346 HTIVRLPKGVFNPYTPIATNL 366


>gi|19881275|gb|AAM00879.1|AF486556_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFMSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|302879962|ref|YP_003848526.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2]
 gi|302582751|gb|ADL56762.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2]
          Length = 540

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 130/305 (42%), Gaps = 70/305 (22%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +++  +L ++     G+ L  D        +++EH++R+       G   F TPR V+  
Sbjct: 134 IDEPTVLTQVVNLVDGLRL--DQADADTKGDLFEHVLRQIKQAGELG--QFRTPRHVIR- 188

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHKI 236
           A   +LDP          +  T+YDP  GT GFL  A NH+          +D  S  K+
Sbjct: 189 AIVEMLDPK---------IGETIYDPAAGTAGFLAAAYNHIRLANSSPSGISDAESDGKL 239

Query: 237 PPILVP----------------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               +                 +G +++P+   +    + +R L      ++   ++ G 
Sbjct: 240 QKRGIGDKLSAAQVSVLQNSTFYGNDVDPKMVRLATMNLTLRGLP-----NVRIQLRNGL 294

Query: 281 TLSKD-------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           T ++D           + +H  L+NPPF  +   DKD +  E K G            + 
Sbjct: 295 TTTQDNERKAELGLPLEGYHVVLANPPFSGR--VDKDRIVDEVKVG----------TSTA 342

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL ++ + L      GGR  +++    LF G  G+   E+RR L+EN+ +EA+++L
Sbjct: 343 TEILFLKYMMDCLR----PGGRCGVIIPEGVLF-GSTGA-HKELRRQLIENNTVEAVLSL 396

Query: 394 PTDLF 398
           P  +F
Sbjct: 397 PGGVF 401


>gi|157415771|ref|YP_001483027.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|19881217|gb|AAM00831.1|AF486546_5 HsdM [Campylobacter jejuni]
 gi|19881257|gb|AAM00864.1|AF486553_5 HsdM [Campylobacter jejuni]
 gi|157386735|gb|ABV53050.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315931059|gb|EFV10034.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 494

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|86152925|ref|ZP_01071130.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|19881263|gb|AAM00869.1|AF486554_5 HsdM [Campylobacter jejuni]
 gi|85843810|gb|EAQ61020.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 494

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|254467344|ref|ZP_05080755.1| subunit M of type I restriction-modification system
           [Rhodobacterales bacterium Y4I]
 gi|206688252|gb|EDZ48734.1| subunit M of type I restriction-modification system
           [Rhodobacterales bacterium Y4I]
          Length = 481

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 58/298 (19%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSE 169
            +++FED         ++   L+ ++    S ++   +++ +R    ++YE L+    + 
Sbjct: 103 VRSVFED-----AYNYMKSGQLMRQVINKISEVDF--NSLSERQHFGDVYEQLLNDLQNA 155

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            + G  ++ TPR V       L DP        PG I  L DP CGTGGFLT AM H+ D
Sbjct: 156 GNAG--EYYTPRAVTAFMVQQL-DP-------QPGEI--LMDPACGTGGFLTCAMRHMRD 203

Query: 230 -----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     K+   L     E +P  H +C   ML+  +E          ++  +TL++
Sbjct: 204 RYVKRPEDEAKMQASL--RAVEKKPLPHMLCTTNMLLHNIEE------PSWVKHDNTLAR 255

Query: 285 DLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            L +    +R    LSNPPFG    K++D +E         +F     K  + + LFL  
Sbjct: 256 PLISWTKDERVDIILSNPPFGG---KEEDGIE-----NNFPQF-----KTRETADLFLAL 302

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L+      GRAA+VL    LF    G G ++ ++  LL    +  IV LP  +F
Sbjct: 303 IIRLLK----KNGRAAVVLPDGSLF----GEGIKTRLKEHLLTECNLHTIVRLPNSVF 352


>gi|253583389|ref|ZP_04860587.1| type I restriction enzyme StySPI M protein [Fusobacterium varium
           ATCC 27725]
 gi|251833961|gb|EES62524.1| type I restriction enzyme StySPI M protein [Fusobacterium varium
           ATCC 27725]
          Length = 479

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 140/338 (41%), Gaps = 62/338 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + +   ++E+   L KI    + I+ +  +V    + ++YE L+ +  SE   GA  + T
Sbjct: 90  YRNAQTKIEEPANLKKIFNEINKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFT 147

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKI 236
           PR        +L+D    + K  P +   + DP  GT GF+ +A  ++    D     K 
Sbjct: 148 PR--------VLIDSIVRIIK--PELGERICDPAAGTFGFIIEADKYLRRKYDDYFGTKE 197

Query: 237 PPILVPHGQ----------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            P+     +          EL P+TH + +   L+          ++ N  QG +LS+  
Sbjct: 198 RPVTDEEREFQATEAFSACELVPDTHRLGIMNALLH--------GINGNFIQGDSLSETG 249

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + F   LSNPPFG K            K GE       + + S+  + FL  +   L
Sbjct: 250 KQLRNFDLILSNPPFGTK------------KGGERVTRDDLVHETSNKQLNFLQIIYRSL 297

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +    G  RAA+++  + LF G  G    +IR  LL    +  ++ LPT +F+   + T 
Sbjct: 298 K--TTGKARAAVIIPDNVLFEGGVG---KDIRMDLLNKCNLHTVLRLPTGIFYAQGVKTN 352

Query: 407 LWILSNRKTEERRGKVQLINATDLW-----TSIRNEGK 439
           +           RG+  + N  + W     T++ N GK
Sbjct: 353 VLFFE-------RGRTDVNNTKETWYYDLRTNMPNFGK 383


>gi|19881226|gb|AAM00838.1|AF486548_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|296273009|ref|YP_003655640.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299]
 gi|296097183|gb|ADG93133.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299]
          Length = 483

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 51/286 (17%)

Query: 139 NFSGIELHPDTVPDRV------MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           N   I  + D +P R       +S++YE  I+  G+    G + + TPR ++     ++ 
Sbjct: 134 NLREILAYADELPFRSSKDKHELSHLYETKIKNMGNAGRNGGQ-YYTPRPLIRAMIDVI- 191

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPILVPHGQELE 248
                     P +   +YD   G+ GFL +A +++ +  + +    KI      +G+E +
Sbjct: 192 ---------DPQIGEKVYDGAVGSAGFLCEAYDYMYERMNKNVDNLKILQERTFYGKEKK 242

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKW 305
              + + +  M++  +E+        NI+  +TL    +D+    R+H  L+NPPFG K 
Sbjct: 243 NLAYVIGIMNMILHGIEA-------PNIKHTNTLGELIRDIQEKDRYHVILANPPFGGKE 295

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            K+        +N ++        K  + + LFL H    L+     GGRAAIV+ ++ L
Sbjct: 296 RKEV------QQNFDI--------KTGETAFLFLQHFIKSLK----AGGRAAIVIKNTIL 337

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            N    S    +R+ LLE+  +  I+ +P   F    + T +   +
Sbjct: 338 SNSDNAS--IALRKHLLESCNLHTILDMPAGTFTGAGVKTVVLFFT 381


>gi|158313868|ref|YP_001506376.1| N-6 DNA methylase [Frankia sp. EAN1pec]
 gi|158109273|gb|ABW11470.1| N-6 DNA methylase [Frankia sp. EAN1pec]
          Length = 775

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 92/204 (45%), Gaps = 26/204 (12%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           ++DP C  G FL  A +H+   G+     P L   GQE+ P    +    +L+  L ++ 
Sbjct: 262 VHDPFCRAGEFLVGAADHIRSRGTGS---PKLTVSGQEINPSLRWLARMNLLLHNLGAE- 317

Query: 269 RRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +++ G  LS  D   G  F   L NPPF     +D D            R+G  
Sbjct: 318 ------DLRAGWALSSPDPQPGGPFEVVLVNPPFNVSGWRDGD-----QNPDSSWRYG-- 364

Query: 328 LPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           +P   + +  +L H LA   E     GGRA +V+ +       A   ES IR  ++E  +
Sbjct: 365 VPPGHNANYAWLQHALACLAE-----GGRAVVVMPAG--AGSSANLQESAIRAAMVEEGV 417

Query: 387 IEAIVALPTDLFFRTNIATYLWIL 410
           ++A+VALP  LF  T+I   LW+L
Sbjct: 418 VDAVVALPPRLFVSTSIPVTLWVL 441


>gi|332969661|gb|EGK08677.1| type I restriction-modification system DNA-methyltransferase
           [Desmospora sp. 8437]
          Length = 474

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 129/307 (42%), Gaps = 52/307 (16%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L KI ++  G++ +  +  +  + N+YE L+ +  SE   GA  + TPR ++++    L+
Sbjct: 103 LEKIIRSIDGLDWY--SAREEGLGNLYEGLLEKNASEKKSGAGQYFTPRPLINVMVK-LI 159

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPP-------ILVPHG 244
           DP        PG      DP  GT GF+  A +++ +    ++ + P            G
Sbjct: 160 DP-------RPG--EKCNDPAAGTFGFMIAADHYLKEKYDEYYDLEPEERTFQKYEAFTG 210

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL  ETH + +    +  +E          I  G TLS            L+NPPFG K
Sbjct: 211 CELVQETHRLALMNARLHGIEG--------KIHLGDTLSSLGKEMGDMDVILTNPPFGTK 262

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       + GE           ++  + FL H+   L+   NG  RAA+VL  + 
Sbjct: 263 ------------RGGERPTRDDFTYPSTNKQLNFLQHIYRALK--ANGKARAAVVLPDNV 308

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF  + G G+S IR  L++   +  I+ LPT +F+   + T +           RG   +
Sbjct: 309 LF--QDGDGKS-IRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFE-------RGTTDI 358

Query: 425 INATDLW 431
            N  ++W
Sbjct: 359 GNTEEVW 365


>gi|67920717|ref|ZP_00514236.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
 gi|67856834|gb|EAM52074.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
          Length = 333

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 126/279 (45%), Gaps = 45/279 (16%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +L++   S S+N K+      F      ++   L+ ++    + I+ + ++    +   I
Sbjct: 89  SLKNLDLSTSNNPKSRILKEAFEDGFNFMKNGTLIRQVINKINEIDFN-NSQDKHLFGEI 147

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   +  + G  ++ TPR V      ++           P +   + DP CGTGG
Sbjct: 148 YEKILKDLQNAGNAG--EYYTPRAVTQFMVNMI----------KPQLGERILDPACGTGG 195

Query: 219 FLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           FLT A+NH    V       K+  +++  G E +P  H +C+  +L+  +++ P+     
Sbjct: 196 FLTCALNHLRKQVKTVEEREKLSHLIM--GVEKKPLPHLLCITNLLLHEIDA-PK----- 247

Query: 275 NIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +++ +TL+  L       +    L+NPPFG K E   D +E        G F P   + 
Sbjct: 248 -VRRDNTLANPLRNYQPSDKVEVILTNPPFGGKEE---DGIE--------GGF-PKAYQT 294

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            + + LFL+ + + LE+    GGR  IVL    +  GR+
Sbjct: 295 KETADLFLVLIIHLLEV----GGRGGIVLPDGNIIWGRS 329


>gi|268322725|emb|CAX37460.1| Pseudogene of Type I restriction enzyme mprotein (N-terminal part)
           [Mycoplasma hominis ATCC 23114]
          Length = 388

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 42/287 (14%)

Query: 113 AIFEDFDFSST-IARL--EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFG 167
            +F D D +S  + R   E+   L  I +  + ++L  + D   D    + YE+L+  + 
Sbjct: 134 GLFNDVDVNSQKLGRSVDERNKKLAAILQEIAAMKLGNYQDNSID-AFGDAYEYLMSMYA 192

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +   ++ TP++V  L T +      A+F +    +  +YDP CG+G  L   +  +
Sbjct: 193 SNAGKSGGEYFTPQEVSELLTKI------AVFNKKK--VNRVYDPACGSGSLLLQTIKVL 244

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SK 284
                          +GQE+   T+ +C   M +  +  D       NI  G TL   S 
Sbjct: 245 GKENIKDGF------YGQEVNLTTYNLCRINMFLHDIGFDKF-----NIYNGDTLLSPSP 293

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
           +    + F   +SNPP+  KWE + + +    +     RF P   L   S     F++H 
Sbjct: 294 EHQRKEPFDVIVSNPPYSIKWEGEDNPLLINDQ-----RFSPAGILAPKSKADFAFILHS 348

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            + L       G AAIV     ++ G A   E +IR++L+EN+ I+A
Sbjct: 349 LSWLATD----GVAAIVCFPGIMYRGGA---EQKIRQYLVENNFIDA 388


>gi|329115887|ref|ZP_08244604.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020]
 gi|326906292|gb|EGE53206.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020]
          Length = 202

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 22/195 (11%)

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPP 300
           HGQ+L   T  +    +++  ++ +       N+  G TL  D  + + + +   + NPP
Sbjct: 23  HGQKLNTTTFNLARMNLILHVVDKE-----RMNLNNGDTLDADWPSEEPYQFDSVVMNPP 77

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +  KW     A +K   +    RFG   PK S     FL+H    L+      G   IVL
Sbjct: 78  YSAKWS----AADKFLSDPRFERFGKLAPK-SKADFAFLLHGFYHLK----ESGTMGIVL 128

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E  IR+ LLE   I+A++ LP ++FF T+I +    + N K    R 
Sbjct: 129 PHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFGTSIPS---TVINLKKNRSRR 182

Query: 421 KVQLINATDLWTSIR 435
            V  I+A+  WT+++
Sbjct: 183 DVLFIDASQDWTNVK 197


>gi|327191125|gb|EGE58171.1| N-6 DNA methylase [Rhizobium etli CNPAF512]
          Length = 484

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 51/288 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   L+ ++    S ++ +  T   +    IYE ++    S  + G  ++ T
Sbjct: 110 FEDAYNYMKSGQLIRQVVNKISDVDFNSLT-ERQHFGEIYEQILNDLQSAGNAG--EYYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-----NHVADCGSHH 234
           PR +    T+ ++D  D     +PG   TL+DP CGTGGFL+ A+     NHV       
Sbjct: 167 PRAL----TSFMVDRIDP----TPG--ETLFDPACGTGGFLSCAIRHMERNHVRTPEQRE 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GK--R 291
           ++   L     E +P  H +CV  ML+  +E DP       ++  +TL++ L + GK  R
Sbjct: 217 RMQAGL--RAVEKKPLPHMLCVTNMLLHGIE-DP-----SFVRHDNTLARPLISWGKDER 268

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG    +++D +E                +  + + LFL  +   L+    
Sbjct: 269 VDIILTNPPFGG---REEDGIENNFPTF----------RTKETADLFLALIVRLLK---- 311

Query: 352 GGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
            GGRAA+VL    LF    G G ++ ++  LL    +  IV LP  +F
Sbjct: 312 PGGRAAVVLPDGSLF----GEGTKTRLKEHLLGECNLHTIVRLPNSVF 355


>gi|298369796|ref|ZP_06981112.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281256|gb|EFI22745.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 432

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 58/330 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+        E  G IR++  YDP
Sbjct: 60  FATIFEYLIKDYNSNSGGTYGEYYTPHAVARIMADILVPA------EVRGQIRSVDVYDP 113

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 114 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 161

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+  G+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 162 -NNVVHGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSAYRDQLEGE-ENRE--RFFA 216

Query: 327 GLPKISDGS---------------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           G+PK  +                 +LF+ H+   L+      G+AAIVL +  +    A 
Sbjct: 217 GIPKTPNHEDKIKEKESRKKMPIFLLFIQHILFSLK----ENGKAAIVLPTGFI---TAQ 269

Query: 372 SG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           SG +  IR +L+EN ++  +V++P+++F  T     +  +     +E    V LI+A+ L
Sbjct: 270 SGIDKRIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDKANKDE----VVLIDASGL 325

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              I++   ++ +++  + ++I + +  ++
Sbjct: 326 GEKIKDGKNQKTVLSRAEEQKICNTFTHKQ 355


>gi|167767091|ref|ZP_02439144.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1]
 gi|167711066|gb|EDS21645.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1]
 gi|291559574|emb|CBL38374.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 547

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 144/322 (44%), Gaps = 32/322 (9%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + I+E+LI+ +  +  + AE + TP  +  +   +++       K +  +  T+YDP  G
Sbjct: 184 ATIFEYLIKDYNKDFGKYAE-YYTPHSIASIIARIMVP------KGTQNV--TVYDPAAG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  +    + + +         I     + L        +   L   +  D        
Sbjct: 235 TGTLVLALAHEIGENNCTIYTQDISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQHL 294

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---- 331
             Q + L K       F Y +SNPPF   +  ++D +  ++      RF  G+P +    
Sbjct: 295 NHQKNGLMK-------FDYIVSNPPFNVDFSDNRDTLAGDNYK---ERFWAGVPNVPNKK 344

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAI 390
            D   ++ M L + +       GRAAIV+ +  L    A +G    IR ++++  ++  +
Sbjct: 345 KDSMAIYQMFLQHIIFSMKENSGRAAIVVPTGFL---TAATGIPKRIREYIVKERMLRGV 401

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQR 449
           V++P+++F  T     +  L N K   +  K  L++A+ L T ++ +GK +R I++ ++ 
Sbjct: 402 VSMPSNIFATTGTNVSVIFLDNSK---KYDKAILMDASKLGTKVKVDGKNQRTILSFEEI 458

Query: 450 RQILDIYVSRENGK-FSRMLDY 470
             I++ + + EN + FS ++DY
Sbjct: 459 ENIINTFNNLENKEDFSVVVDY 480


>gi|325917800|ref|ZP_08179982.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535974|gb|EGD07788.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 489

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 107/253 (42%), Gaps = 47/253 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   S  + G  +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQSAGNAG--EFYTPRPVTEFMVRMV----------DPKLHEKVMDPA 190

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFLT A+ H             I    +  G E +P  H +    M++  +E    
Sbjct: 191 CGTGGFLTCAIEHKRQRYVRTSEDEAILQASI-FGVEKKPLPHLLATTNMVLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             +   I+  +TL++ L +   G+R    ++NPPFG     ++D +E         R   
Sbjct: 246 --VPSQIKHDNTLARPLISWGPGERVDCIVANPPFGG---MEEDGIESNFPAAFRTR--- 297

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
              + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL   
Sbjct: 298 ---ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLTEC 343

Query: 386 LIEAIVALPTDLF 398
            +  IV LP  +F
Sbjct: 344 NLHTIVRLPNGVF 356


>gi|261417778|ref|YP_003251460.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|319767409|ref|YP_004132910.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
 gi|261374235|gb|ACX76978.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|317112275|gb|ADU94767.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
          Length = 634

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 102/225 (45%), Gaps = 29/225 (12%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            YD   G  G L  A    ++    H     L  +GQE+     A+   G L  RL    
Sbjct: 159 FYDGASGLSGTLCAA----SEYARRHHCEVAL--YGQEINQRAWAL---GKL--RLLFHD 207

Query: 269 RRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           R D    + +G TL++  F      K+F Y + N PFG +    +  +   +     GR 
Sbjct: 208 RTD--ARLAKGDTLTEPAFVEGNKLKKFDYIMMNFPFGMRINSYEQLMNDRYDRFVYGR- 264

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              LP+ S   M F++H  + L+      G+A +V+++  LF G     E+ IR  LL  
Sbjct: 265 ---LPRTS-ADMAFILHALSSLK----ENGKAVLVVTNGTLFRG---GPEAVIREHLLAA 313

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           DLIE+++ALP+ L     I   L +L+  K+ ER G +  INA +
Sbjct: 314 DLIESVIALPSSLLDGAAIQINLLVLNKNKSAEREGNILFINAEN 358


>gi|205356615|ref|ZP_03223377.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345472|gb|EDZ32113.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 473

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 133 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 181

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 182 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 241

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG K        EKE     
Sbjct: 242 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFGGK--------EKE----- 281

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 282 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 333

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 334 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 362


>gi|32476612|ref|NP_869606.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica
           SH 1]
 gi|32447158|emb|CAD76984.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica
           SH 1]
          Length = 507

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 150/393 (38%), Gaps = 93/393 (23%)

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           DLES   V   +FY      L T GS                  +++F D + S     L
Sbjct: 57  DLESKDGVEQLAFYRAMLVHLGTEGSPRV---------------QSVFADANTS-----L 96

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +   L K+ ++   ++ +     +  + ++YE L+ R  SE   GA  + TPR ++   
Sbjct: 97  RQPKNLSKLVQDLDELDWY--VAREEGLGDMYEGLLERNASEKKSGAGQYFTPRPLIECM 154

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHKI-PPI 239
              +        +  PG +  + DP  GTGGFL  A  ++        D  +  ++    
Sbjct: 155 VNCM--------RPQPGEV--IQDPAAGTGGFLIAAHQYICNQTDDLFDLDADEQVFQKQ 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRL-----ESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              H  EL P+TH + V   ++  +       D    + +N+     +            
Sbjct: 205 QAYHAVELVPDTHRLLVMNCMLHGVGGHLASGDSMGSIGQNLPNADVI------------ 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-------GSMLFLMHLANKLE 347
            L+NPPFG K                    G G P   D         + FL H+   L+
Sbjct: 253 -LTNPPFGTKR-------------------GGGKPTRDDFTFVTGNKQLAFLQHIYRGLK 292

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRAA+VL  + LF    G   + IR  L++   +  I+ LPT +F+   + T +
Sbjct: 293 P----GGRAAVVLPDNVLFEEGVG---TRIRADLMDKCNLHTILRLPTGIFYAQGVKTNV 345

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
              +  KT+   G  +     DL T++   GK+
Sbjct: 346 LFFTRGKTDT--GNTKQTWVYDLRTNMPAFGKR 376


>gi|146319438|ref|YP_001199150.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
 gi|145690244|gb|ABP90750.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
          Length = 237

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 91/173 (52%), Gaps = 21/173 (12%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   ++NPP+  KW+ ++++  K+ +  E G+  P     S     F++H    L   
Sbjct: 16  RSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKLAPA----SKADFAFILHSLYHL--- 67

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  G  AIVL    LF G A   E  IR+ ++E + ++A++ LP +LF+ T I T + +
Sbjct: 68  -NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEKNYLDAVIGLPANLFYGTGIPTTILV 123

Query: 410 L-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              NR+T++    V  I+A+  +     +GK +  ++DD   +I++ Y +R++
Sbjct: 124 FKKNRQTKD----VFFIDASKEF----EKGKNQNHLSDDMVEKIVETYHNRQS 168


>gi|332673287|gb|AEE70104.1| type I restriction enzyme M protein [Helicobacter pylori 83]
          Length = 487

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +   +   ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKSYNNASGDTYAEYYTPLSIASIIAKLLVN--------EPTQNVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTNS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     R  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGRMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    N  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----NNKGKGAIVVPTGFI---SAKSGIENKIVRHLVDKRLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + ++  +KT     +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSVIFFKKTPS-VNEVVLIDASKLGEEYTENKNKKTRL 451


>gi|307289959|ref|ZP_07569887.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498983|gb|EFM68473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 330

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 27/191 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDP 212
           V+ + YE LI +F SE  + A +F TP  V   +A  + LD      KE P    +++DP
Sbjct: 155 VIGDAYEFLISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQ-----KERP--FFSVFDP 207

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  + +  N++    +H   P  +  HGQEL   T+ +    +++  ++++     
Sbjct: 208 TMGSGSLMLNVRNYL----TH---PDNVKYHGQELNTTTYNLAKMNLILHGVDAE----- 255

Query: 273 SKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             NI+ G TL+KD  T +   F   + NPP+   W  D   ++    +    R+G   PK
Sbjct: 256 EMNIRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGKLAPK 311

Query: 331 ISDGSMLFLMH 341
            S     FL+H
Sbjct: 312 -SKADFAFLLH 321


>gi|291528113|emb|CBK93699.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 545

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 144/325 (44%), Gaps = 38/325 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPT 213
           + I+E+LI+ +  +  + AE + TP  +  +   +++          P  ++  T+YDP 
Sbjct: 184 ATIFEYLIKDYNKDFGKYAE-YYTPHSIASIIARIMV----------PEGVQNVTVYDPA 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  +    + + +         I     + L        +   L   +  D      
Sbjct: 233 AGSGTLVLALAHEIGESNCTIYTQDISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQ 292

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKI 331
              +Q + L K       F Y +SNPPF   +  ++D +      G++   RF  G+P +
Sbjct: 293 HLNRQKNGLMK-------FDYIVSNPPFNVDFSDNRDTLA-----GDIYKERFWAGVPNV 340

Query: 332 ----SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                D   ++ M L + +      GGRAA+V+ +  L  G       +IR  ++E+ ++
Sbjct: 341 PNKNKDSMAIYQMFLQHIIFSMKENGGRAAVVVPTGFLTAGTRIP--KKIRERIVEDRML 398

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IIND 446
             +V++P+++F  T     +  L N K  E+     L++A+ L T I+ +GK +R +++ 
Sbjct: 399 RGVVSMPSNIFATTGTNVSVLFLDNSKKYEQ---AILMDASKLGTKIKVDGKNQRTVLSP 455

Query: 447 DQRRQILDIYVSREN-GKFSRMLDY 470
           ++   I+D + + E    FS ++DY
Sbjct: 456 EEIENIIDTFNNFETKDDFSVVVDY 480


>gi|257467221|ref|ZP_05631532.1| type I restriction-modification system M protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 283

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 15/146 (10%)

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL   L   ++ F   +SNPP+  KW  D D       N E  RF P   L   S
Sbjct: 43  IKRGDTLLNPLHNEEKPFDAIVSNPPYSIKWVGDADPT---LINDE--RFAPAGKLAPKS 97

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N+ ++ ++ 
Sbjct: 98  YADYAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-ERTIRKYLVDNNFVDCVIQ 150

Query: 393 LPTDLFFRTNIATYLWILSNRKTEER 418
           LP +LFF T+IAT + +++  KTE R
Sbjct: 151 LPDNLFFGTSIATCILVMAKNKTENR 176


>gi|308063301|gb|ADO05188.1| type I restriction enzyme M protein [Helicobacter pylori Sat464]
          Length = 543

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  + ++   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIANIIAKLLVN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKDL    +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKDL--KGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SDKGKGAIIVPTGFI---SAKSGVENKIVRHLVDKKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW-TSIRNEGKKRRI 443
           +P+ +F   N  T + ++  +KT     KV LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSVIFFKKT-PSANKVVLIDASKLGEECTENKNKKTRL 451


>gi|166711014|ref|ZP_02242221.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 489

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 47/253 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   S  + G  +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQSAGNAG--EFYTPRPVTEFMVRMV----------DPKLHEKVMDPA 190

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFLT A+ H             I    +  G E +P  H +    M++  +E    
Sbjct: 191 CGTGGFLTCAIEHKRQRYVRTAEDEAILQASI-FGVEKKPLPHLLATTNMVLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             +   I+  +TL++ L +   G+R    ++NPPFG     ++D +E         R   
Sbjct: 246 --VPSQIKHDNTLARPLISWGPGERVDCIVANPPFGG---MEEDGIESNFPAAFRTR--- 297

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
              + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL   
Sbjct: 298 ---ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLTEC 343

Query: 386 LIEAIVALPTDLF 398
            +  +V LP  +F
Sbjct: 344 NLHTVVRLPNGVF 356


>gi|330881904|gb|EGH16053.1| Type I restriction-modification system DNA methyltransferase
           subunit [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 482

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 137/331 (41%), Gaps = 65/331 (19%)

Query: 138 KNFSGIE--LHPDTV-----------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           KN+ G+E  L PD +              V   IYE+ +  F    ++   +F TP  +V
Sbjct: 132 KNYHGLERDLLPDLIKIFNRPALQNTSGDVFGRIYEYFLNEFAKSGAQEGGEFFTPPSLV 191

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--PILVP 242
            +   ++ +PD            T+ DP CG+ G      + + D    HK+     +  
Sbjct: 192 RMIVKVI-EPDHG----------TVLDPACGSAGMFVQTGHFMEDV--RHKLTHDADITF 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNP 299
           +GQE       +    + +  LE          I  G+T  +D   L  G  F   ++NP
Sbjct: 239 YGQEKAEVNSKLARLNLAVHGLEG--------KILLGNTFYEDQHQLVGGCDF--VMANP 288

Query: 300 PF---GKKWEKDKDAVEKEHKNGELGRFGPGLP-------------KISDGSMLFLMHLA 343
           PF   G +  K K  V     N    R   GLP              IS+G+ L++ +  
Sbjct: 289 PFNVDGVQVAKIKSQVGTLEDNPP-KRLPFGLPGTAGKSRGKDATETISNGNSLWIQYFY 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L    N  GRA  V+++S      AG+ + +IR+ L+E   ++ ++++    F+  ++
Sbjct: 348 SYL----NATGRAGFVMAASA---SDAGNKDRDIRQQLIETGHVDVMMSIGPKFFYTRSL 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSI 434
              LW     K +ER   V +I+A +++T +
Sbjct: 401 PCTLWFYDKSKPKERLDGVLMIDARNVYTVV 431


>gi|325982846|ref|YP_004295248.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
 gi|325532365|gb|ADZ27086.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
          Length = 549

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 36/275 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TPR +V L   +L           P   R ++DP 
Sbjct: 158 VLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELLVNML----------EPYQGR-VFDPC 206

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V +     +I  I + +GQE    T  +    + IR ++S       
Sbjct: 207 CGSGGMFVQSEKFVEE--HQGRIDDISI-YGQESNQTTWRLAKMNLAIRGIDSSQ----V 259

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           K   +GS L+ D     +  + ++NPPF    W         E   G+  R+  G P   
Sbjct: 260 KWNNEGSFLN-DAHKDLKADFIIANPPFNVSDWSG-------EQLRGD-ARWQYGTPPPG 310

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIV 391
           + +  +L H      L P G   A +VL+   L +    SGE +IR+ L+ + +LI+ IV
Sbjct: 311 NANFAWLQHFI--YHLSPTG--IAGVVLAKGALTS--KTSGEGDIRKRLITDGNLIDCIV 364

Query: 392 ALPTDLFFRTNIATYLWILS-NRKTEERRGKVQLI 425
            LP  LF  T I   LW L+ NR   +  G  + I
Sbjct: 365 NLPAKLFLNTQIPAALWFLNRNRAGMDIGGHAKTI 399


>gi|188577907|ref|YP_001914836.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522359|gb|ACD60304.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 489

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 47/253 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   S  + G  +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQSAGNAG--EFYTPRPVTEFMVRMV----------DPKLHEKVMDPA 190

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFLT A+ H             I    +  G E +P  H +    M++  +E    
Sbjct: 191 CGTGGFLTCAIEHKRQRYVRTAEDEAILQASI-FGVEKKPLPHLLATTNMVLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             +   I+  +TL++ L +   G+R    ++NPPFG     ++D +E         R   
Sbjct: 246 --VPSQIKHDNTLARPLISWGPGERVDCIVANPPFGG---MEEDGIESNFPAAFRTR--- 297

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
              + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL   
Sbjct: 298 ---ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLTEC 343

Query: 386 LIEAIVALPTDLF 398
            +  +V LP  +F
Sbjct: 344 NLHTVVRLPNGVF 356


>gi|91213999|ref|YP_543985.1| DNA methylase M [Escherichia coli UTI89]
 gi|117626661|ref|YP_859984.1| DNA methylase M [Escherichia coli APEC O1]
 gi|91075573|gb|ABE10454.1| DNA methylase M [Escherichia coli UTI89]
 gi|115515785|gb|ABJ03860.1| DNA methylase M [Escherichia coli APEC O1]
 gi|294493863|gb|ADE92619.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           IHE3034]
 gi|307629516|gb|ADN73820.1| DNA methylase M [Escherichia coli UM146]
 gi|323950567|gb|EGB46445.1| N-6 DNA methylase [Escherichia coli H252]
          Length = 529

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|324115279|gb|EGC09243.1| N-6 DNA methylase [Escherichia fergusonii B253]
          Length = 529

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|16132170|ref|NP_418769.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655]
 gi|89111058|ref|AP_004838.1| DNA methylase M [Escherichia coli str. K-12 substr. W3110]
 gi|238903437|ref|YP_002929233.1| DNA methylase M [Escherichia coli BW2952]
 gi|331650830|ref|ZP_08351858.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia
           coli M718]
 gi|135200|sp|P08957|T1MK_ECOLI RecName: Full=Type I restriction enzyme EcoKI M protein;
           Short=M.EcoKI
 gi|322812245|pdb|2Y7C|B Chain B, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812246|pdb|2Y7C|C Chain C, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812250|pdb|2Y7H|B Chain B, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812251|pdb|2Y7H|C Chain C, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|41753|emb|CAA29792.1| unnamed protein product [Escherichia coli K-12]
 gi|537191|gb|AAA97246.1| CG Site No. 621; alternate gene names hs, hsm, hsp, rm [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1790808|gb|AAC77305.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655]
 gi|85677089|dbj|BAE78339.1| DNA methylase M [Escherichia coli str. K12 substr. W3110]
 gi|238860824|gb|ACR62822.1| DNA methylase M [Escherichia coli BW2952]
 gi|260450838|gb|ACX41260.1| N-6 DNA methylase [Escherichia coli DH1]
 gi|315138904|dbj|BAJ46063.1| DNA methylase M [Escherichia coli DH1]
 gi|331051284|gb|EGI23333.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia
           coli M718]
          Length = 529

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|167991323|ref|ZP_02572422.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205330316|gb|EDZ17080.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261249610|emb|CBG27480.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996883|gb|ACY91768.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301161008|emb|CBW20545.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132867|gb|ADX20297.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991334|gb|AEF10317.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 529

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|15645091|ref|NP_207261.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313567|gb|AAD07525.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 487

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLIN--------EPTRNVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRNAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD F GK   Y +SNPPF   +  +   + +   +  LG   P +PK +   M 
Sbjct: 294 TNPYHSKD-FKGK-MDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNNKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  +V 
Sbjct: 350 IYTLFFQHCLNML----SNKGKGAIIVPTGFI---SAKSGVENKIIRHLVDERLVYGVVC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVVLIDASKLGEEYTENKNKKTRL 451


>gi|317180666|dbj|BAJ58452.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 543

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + S+      ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNSDKGGKYAEYYTPLSIASIIAKLLIN--------EPTQNVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTNS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    N  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----NNKGKGAIVVPTGFI---SAKSGIENKIVRHLVDERLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKT-PSANEVVLIDASKLGEEYTENKNKKTRLRESD 455


>gi|315918351|ref|ZP_07914591.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692226|gb|EFS29061.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 322

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 15/146 (10%)

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL   L   ++ F   +SNPP+  KW  D D       N E  RF P   L   S
Sbjct: 82  IKRGDTLLNPLHNEEKPFDAIVSNPPYSIKWVGDADPT---LINDE--RFAPAGKLAPKS 136

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N+ ++ ++ 
Sbjct: 137 YADYAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-ERTIRKYLVDNNFVDCVIQ 189

Query: 393 LPTDLFFRTNIATYLWILSNRKTEER 418
           LP +LFF T+IAT + +++  KTE R
Sbjct: 190 LPDNLFFGTSIATCILVMAKNKTENR 215


>gi|218708016|ref|YP_002415535.1| DNA methylase M [Escherichia coli UMN026]
 gi|293403007|ref|ZP_06647104.1| DNA methylase M [Escherichia coli FVEC1412]
 gi|298378534|ref|ZP_06988418.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           FVEC1302]
 gi|300899293|ref|ZP_07117559.1| N-6 DNA Methylase [Escherichia coli MS 198-1]
 gi|301646865|ref|ZP_07246711.1| N-6 DNA Methylase [Escherichia coli MS 146-1]
 gi|218435113|emb|CAR16069.1| DNA methylase M [Escherichia coli UMN026]
 gi|291429922|gb|EFF02936.1| DNA methylase M [Escherichia coli FVEC1412]
 gi|298280868|gb|EFI22369.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           FVEC1302]
 gi|300357072|gb|EFJ72942.1| N-6 DNA Methylase [Escherichia coli MS 198-1]
 gi|301074918|gb|EFK89724.1| N-6 DNA Methylase [Escherichia coli MS 146-1]
          Length = 529

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|256810223|ref|YP_003127592.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793423|gb|ACV24092.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 502

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 53/269 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           +V+S IYE ++   GSE     E F TPR V+     ++           P +   ++DP
Sbjct: 170 QVLSQIYEEILLNMGSEAGWSGE-FYTPRPVIRFIVKII----------KPKVGEKIFDP 218

Query: 213 TCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             G+ GFL +A  ++ D           +I      +G E +P  + +    M++  +  
Sbjct: 219 FGGSAGFLVEAYKYIKDKLGDKITVQEEEILQRETFYGHEKKPLPYLLGTMNMILHGI-- 276

Query: 267 DPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                L+ N  + ++L +D+      +++   ++NPPFG K          E+K  +   
Sbjct: 277 -----LTPNYYRRNSLMEDVHNVPEHEKYDVIMTNPPFGGK----------ENKIVQNNF 321

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             P    +     L L ++  KL+     GGRAA++L    +  G  G    EIRR LLE
Sbjct: 322 PYP----VQATEALALQYIMRKLK----DGGRAAVILPEGQIMFG--GGKFKEIRRELLE 371

Query: 384 NDLIEAIVALPTDLF------FRTNIATY 406
              + AIV+LP  +F       +TNI  +
Sbjct: 372 KFNVFAIVSLPQGVFSQMGAGVKTNIVFF 400


>gi|253775030|ref|YP_003037861.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|301022251|ref|ZP_07186149.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
 gi|146398|gb|AAA23985.1| restriction-modification enzyme type I M subunit [Escherichia coli]
 gi|242379864|emb|CAQ34698.1| host modification; DNA methylase M, subunit of EcoKI
           restriction-modification system [Escherichia coli
           BL21(DE3)]
 gi|253326074|gb|ACT30676.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980326|gb|ACT45996.1| DNA methylase M [Escherichia coli BL21(DE3)]
 gi|299881301|gb|EFI89512.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
          Length = 529

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|16767769|ref|NP_463384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197262701|ref|ZP_03162775.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|730886|sp|P40813|T1M_SALTY RecName: Full=Type I restriction enzyme StySJI M protein;
           Short=M.StySJI
 gi|154130|gb|AAA19429.1| restriction-modification enzyme type I M subunit [Salmonella
           enterica]
 gi|16423092|gb|AAL23343.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197240956|gb|EDY23576.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|312915622|dbj|BAJ39596.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222501|gb|EFX47573.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 529

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|254164266|ref|YP_003047376.1| DNA methylase M [Escherichia coli B str. REL606]
 gi|253976169|gb|ACT41840.1| DNA methylase M [Escherichia coli B str. REL606]
          Length = 529

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 108/263 (41%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL        K  P  +  + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL--------KSQPREV--VQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|19881281|gb|AAM00884.1|AF486557_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 59/269 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++     ++           P     +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIKTMVEVI----------DPKPKERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+    ++   L+NPPFG          EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEKDKYEVILANPPFG--------GXEKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +     P  S+ + +LFL H+   L+      GR AI++    LF  +  +    +++
Sbjct: 303 --QIQENFPIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKK 354

Query: 380 WLLENDLIEAIVALPTDLFF-----RTNI 403
            LL++  +E +++LP+ +F      +TN+
Sbjct: 355 DLLDDFNLECVLSLPSGVFLPYSAVKTNV 383


>gi|327480083|gb|AEA83393.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 488

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 49/252 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N+YE L+R   +  + G  +F TPR V      ++           P +   + DP CG
Sbjct: 145 GNLYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLDEKVMDPACG 192

Query: 216 TGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           TGGFLT  + H     V        +   +  +G E +P  H +    M++  +E     
Sbjct: 193 TGGFLTCTIEHKRSRYVKTADDERTLQASI--YGVEKKPLPHLLATTNMILHGIE----- 245

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TL++ L +    +R    ++NPPFG     ++D +E         R    
Sbjct: 246 -VPNQIRHDNTLARPLISWGPKERVDCIVANPPFGG---MEEDGIETNFPAAFRTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + +D  ++ +MHL  +       GGRAA+VL    LF    G G +S I+  LL    
Sbjct: 298 --ETADLFLVLIMHLLKE-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLTECN 344

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 345 LHTIVRLPNGVF 356


>gi|323139525|ref|ZP_08074571.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242]
 gi|322395204|gb|EFX97759.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242]
          Length = 717

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 128/326 (39%), Gaps = 57/326 (17%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI------ELHPDTVPDR 153
           L S  +S  DN + +     F     R++   LL  I     GI      ELH       
Sbjct: 124 LRSLSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIVNKVGGIHFTSSDELH------- 175

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  +YE ++R       +  E F TPR VV     +            P +  T+ DP 
Sbjct: 176 TLGALYESMLREMRDAAGDSGE-FYTPRAVVRFMVEV----------TDPRLGETVLDPA 224

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GTGGFL +A NH    V       ++    +  G E +   + +C   +L+  L+    
Sbjct: 225 SGTGGFLVEAYNHLEKQVKTVADRKRLQNDTI-SGCEPKSLPYLLCQMNLLLHGLD---- 279

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              +  I  G+ L     ++   +R    L+NPPFG + EK           G  G F P
Sbjct: 280 ---APQIDPGNALRFKLSEIGEKERVDVILTNPPFGGEEEK-----------GIQGNF-P 324

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + ++ ++LFL  +  KL+  P   GR A      P  +  +      IR  LL +  
Sbjct: 325 EDRQTAETALLFLQLIMRKLKRQPTLAGRPARAAVVVPHGSLSSPGVAKRIRETLLGDFN 384

Query: 387 IEAIVALPTDLFFRTNIATYLWILSN 412
           I AIV LP ++F     A Y  I SN
Sbjct: 385 ITAIVRLPHNVF-----APYTDIQSN 405


>gi|317179168|dbj|BAJ56956.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 543

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 128/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIASIIAKLLIN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SDKGKGAIVVPTGFI---SAKSGIENKIVRHLVDKKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT    G V LINA+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKTPSEDG-VVLINASKLGEEYTENKNKKTRLRGSD 455


>gi|168243977|ref|ZP_02668909.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194450433|ref|YP_002048548.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194408737|gb|ACF68956.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205336978|gb|EDZ23742.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 529

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|160885909|ref|ZP_02066912.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483]
 gi|156108722|gb|EDO10467.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483]
          Length = 221

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 19/169 (11%)

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  KW  D   ++ E +  E+G+  P     S     F++ + +KL++     G 
Sbjct: 5   IANPPFSAKWSADVSFMDDE-RFSEVGKLAPK----SKADYAFVLDIVHKLDV----TGI 55

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           AAIVL    LF G A   E  IRR+L+E+ + I+A++ LP ++F+ T+I T + ++   +
Sbjct: 56  AAIVLPHGVLFRGAA---EGVIRRFLIEDKNCIDAVIGLPANIFYGTSIPTCILVIKKCR 112

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            E+    +  I+A+  +  ++N+      ++D+Q  +I+  +  R+  K
Sbjct: 113 KEDEN--ILFIDASKDFEKLKNKNS----LSDEQIDKIVQTFQERKEIK 155


>gi|260425081|ref|ZP_05734132.2| type I restriction enzyme M protein [Dialister invisus DSM 15470]
 gi|260404084|gb|EEW97631.1| type I restriction enzyme M protein [Dialister invisus DSM 15470]
          Length = 561

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 148/356 (41%), Gaps = 31/356 (8%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++E+LI+ +  +  + AE + TP  +  +   +++ PD A          T+YDP  G+G
Sbjct: 202 VFEYLIKDYNKDFGKYAE-YYTPHSIASIIAKIMV-PDGA-------QNVTVYDPAAGSG 252

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             +    + + +         I     + L        +   L   +  D        + 
Sbjct: 253 TLVLALAHEIGEDNCTIYTQDISQKSNEFLRLNLILNNLVHSLGNVVHGDT-------LL 305

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
           Q   L+K      +F Y +SNPPF   +  ++D +  E          P +PK    SM 
Sbjct: 306 QPEHLNKQKNGLMKFDYIVSNPPFNMDFSDNRDTLAGEKYKERFWAGVPNIPKKKKDSMD 365

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL H+   L+      G+A IV+ +   F   A   + +IR  ++   ++  ++++
Sbjct: 366 IYLLFLQHILFSLK----DTGKAGIVVPTG--FLTTATGIQKKIREKIISEKMLRGVISM 419

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQI 452
           P+++F  T     +  L  +K ++   KV L++A+ +   I+ +GK +R ++ D +  QI
Sbjct: 420 PSNIFATTGTNVSIMFLDAQKQQD---KVMLMDASSMGQKIKVDGKNQRTVLRDFEIEQI 476

Query: 453 LDIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           +  +    E   FS M+        +  +      +F L    ++  E D   ++L
Sbjct: 477 ISTFNCEIETDDFSVMVSLDQISKNKFSLSAGQYFTFKLPYVEISEAEFDKEMQRL 532


>gi|110834691|ref|YP_693550.1| type I restriction-modification system, M subunit [Alcanivorax
           borkumensis SK2]
 gi|110647802|emb|CAL17278.1| type I restriction-modification system, M subunit [Alcanivorax
           borkumensis SK2]
          Length = 533

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 59/291 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE+L+ +  +    G   F TPR ++  A   L+DP              + DP 
Sbjct: 156 VKGDIYEYLLSKLTTAGING--QFRTPRHIID-AMVELIDPQPT---------DVICDPA 203

Query: 214 CGTGGFLTDAMNHVA------------DCGSHHKIPPILVPH----------GQELEPET 251
           CGT GFL  AM ++             + G+ H    +L P+          G + +   
Sbjct: 204 CGTAGFLARAMEYLNRVHSSEAGTFEDEDGNKHYTGDLLEPYREHINKQMFWGFDFDTTM 263

Query: 252 HAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             V    M++  +       +  L+K++++     ++ F    F   L+NPPF       
Sbjct: 264 LRVSSMNMMLHGVNGANILYQDSLNKSVKENYPEQEEDF----FDIILANPPF------- 312

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K ++++ + N ++     GL K     +LF+ H+   L+L    GGRAA+++    LF  
Sbjct: 313 KGSLDETNTNPDV----LGLVKTKKTELLFVAHILRALKL----GGRAAVIVPDGVLFG- 363

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
            +     ++R  L+EN+ +E IV+LP+ +F     ++T + + +   + ER
Sbjct: 364 -SSKAHQQLRTELIENNQLEGIVSLPSGVFKPYAGVSTAILLFTKGGSTER 413


>gi|158521272|ref|YP_001529142.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510098|gb|ABW67065.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 55/258 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+S IYE L++R  ++ +  A +F T R ++     ++           P     +YDP 
Sbjct: 154 VLSEIYEDLLKRVAADSAGYAGEFYTQRHIIRAMVEVV----------QPKPKDKVYDPC 203

Query: 214 CGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GT GFL +A +++       G           +G E++P T+ +    M++  +E    
Sbjct: 204 FGTAGFLGEAADYIRRNNTLSGPQLDALQKKTFYGLEIKPLTYLLGTMNMILHGIE---- 259

Query: 270 RDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                N++  +TL   S+++    R+   LSNPP+G                   G+   
Sbjct: 260 ---GANLELTNTLEIHSQNVGEKARYDVILSNPPYG-------------------GKMAS 297

Query: 327 GLP-----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G+      + S    LFL H+   L      GGRA +V+    LF    G  + ++R+ L
Sbjct: 298 GMQTNFRVRSSATECLFLQHIMANLA----KGGRAGVVIPEGVLFR---GGPDQKVRKEL 350

Query: 382 LENDLIEAIVALPTDLFF 399
           LE   +  I++LP   F 
Sbjct: 351 LEQFNVHTILSLPAGCFL 368


>gi|218550388|ref|YP_002384179.1| DNA methylase M [Escherichia fergusonii ATCC 35469]
 gi|218357929|emb|CAQ90573.1| DNA methylase M [Escherichia fergusonii ATCC 35469]
          Length = 529

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     + H   +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|152987952|ref|YP_001351361.1| type I restriction-modification system subunit M [Pseudomonas
           aeruginosa PA7]
 gi|150963110|gb|ABR85135.1| type I restriction-modification system, M subunit [Pseudomonas
           aeruginosa PA7]
          Length = 489

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 47/251 (18%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+R   +  + G  +F TPR V      ++           P +   + DP CG
Sbjct: 145 GDMYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLDEKVMDPACG 192

Query: 216 TGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TGGFLT  + H            ++    +  G E +P  H +    M++  +E      
Sbjct: 193 TGGFLTCTIEHKRSRYVKTAEDERVLQASI-FGVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLS+ L +   G+R    ++NPPFG     ++D +E         R     
Sbjct: 246 VPSQIKHDNTLSRPLISWGPGERVDCIVANPPFGG---MEEDGIETNFPAAFRTR----- 297

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
            + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL    +
Sbjct: 298 -ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLTECNL 345

Query: 388 EAIVALPTDLF 398
             IV LP  +F
Sbjct: 346 HTIVRLPNGVF 356


>gi|167750092|ref|ZP_02422219.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702]
 gi|167656965|gb|EDS01095.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702]
          Length = 621

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 41/310 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ + F+   L  D V   ++  IYE+ + +F   ++     F TP+ +V +   ++
Sbjct: 145 LLAELLRIFNNSAL--DDVGGDIIGRIYEYFLNKFAKNIASDDGVFFTPKSLVKMIVNII 202

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
            +P   +          L D  CG+GG    + + V   G +      +  +GQE     
Sbjct: 203 -EPKQGV----------LLDCACGSGGMFVQSGDFVNAAGMNAN--STMTFYGQEKVEYN 249

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKD 310
             +C+  M +  L       + K+  + +T   D         Y ++NPPF      + D
Sbjct: 250 AQLCLMNMAVHGLTG-----VIKSGDEANTFYHDAHNLNGCCDYIMANPPF------NVD 298

Query: 311 AVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            V+ E      GR   GLP      ++ + + L++ +  + L    N  GRA  V++SS 
Sbjct: 299 KVKAESCESA-GRLPFGLPSVNKNKEVGNANYLWISYFYSYL----NEHGRAGFVMASSA 353

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
                +   + +IR  L+    ++ ++++  + F+  ++   LW     K E  R KV  
Sbjct: 354 T---DSQGKDKDIREKLIGTGHVDVMISVGNNFFYTKSLPCSLWFFDKAKGEAIRDKVLF 410

Query: 425 INATDLWTSI 434
           I+A + +T +
Sbjct: 411 IDARNYYTVV 420


>gi|256810723|ref|YP_003128092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus fervens AG86]
 gi|256793923|gb|ACV24592.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus fervens AG86]
          Length = 577

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 138/307 (44%), Gaps = 36/307 (11%)

Query: 154 VMSNIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           ++ + YE  +  F  ++  EG  +  TP +V  L   L+   DD            + DP
Sbjct: 229 ILGDAYEWTLNYFAPTKAKEG--EVYTPIEVSKLIAHLVEPRDD----------EVILDP 276

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRD 271
            CG+G  L +        GS+    P +V  GQE    T  +     ++  +   D +  
Sbjct: 277 ACGSGSMLIEQYRF---AGSN----PNIVLVGQERNDVTAVLAKLNFILHGINLKDAKVF 329

Query: 272 LSKNI--QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +  ++   +  +  K++    +    ++NPP+ +    D+D ++   K   + ++G    
Sbjct: 330 IGDSLLNPKFESFIKEVKKIDKADKVVANPPWNQDG-YDEDTLKVNEKYNYIYKYGFPNK 388

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             +D + + L++   +         +A IVL S  LF  R+G  E  IR+  +++DLIEA
Sbjct: 389 NSADWAWVQLINYYTE--------KKAGIVLDSGALF--RSGR-EKTIRKKFVDDDLIEA 437

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +V LP  LF+       + IL+  K EER+GK+  INA++ +     E KK   ++D+  
Sbjct: 438 VVLLPEKLFYNCPAPGIILILNKNKPEERKGKILFINASNEYVK-HPEVKKLNKLSDENI 496

Query: 450 RQILDIY 456
            +I   Y
Sbjct: 497 EKIAKAY 503


>gi|312115848|ref|YP_004013444.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220977|gb|ADP72345.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 482

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 131/311 (42%), Gaps = 54/311 (17%)

Query: 145 LHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           LH  T  D+  +S +YE  IRR G+    G E + TPR ++     ++          +P
Sbjct: 145 LHFKTQADKHELSALYETRIRRMGNAGRNGGE-YYTPRPLIRAMIRVV----------AP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            +  T+YD   G+ GFL +A +++       S ++       +GQE +   + + +  M+
Sbjct: 194 KIGETIYDGAVGSAGFLCEAYDYLRRPNISASDYETLQRRTFYGQEKKSLAYIIGIMNMI 253

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +E       + NI + ++L++++   +   R    L+NPPFG               
Sbjct: 254 LHGIE-------APNIVRTNSLNENVLDYQEKDRHDIVLANPPFG--------------- 291

Query: 318 NGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            GE        P K  + + LFL H   KL      GGRAA+V+ ++ L N    S    
Sbjct: 292 GGERREVQQNFPIKSGETAYLFLQHFIRKLR----AGGRAAVVIKNTFLSNTDNAS--VA 345

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +RR LLE+  +  I+  P   F    + T +      +   R    QL+         R+
Sbjct: 346 LRRELLESCNLHTILDCPQGTFQGAGVKTVVLFFQKGEATRRIWYYQLVPG-------RS 398

Query: 437 EGKKRRIINDD 447
            GK   + +DD
Sbjct: 399 MGKTNPLNDDD 409


>gi|14518368|ref|NP_116851.1| putative hsdm of type i restriction-modification system
           [Microscilla sp. PRE1]
 gi|14485003|gb|AAK62885.1| MS163, putative HsdM of type I restriction-modification system
           [Microscilla sp. PRE1]
          Length = 362

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 41/224 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+ I RF      GA  F TP  +V L   LL           P   R ++DP 
Sbjct: 169 ILGRIYEYYIGRFAMAEGSGAGQFFTPGSIVRLLVELL----------EPYKGR-IFDPA 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+ G    ++  V + G +     I   +GQE+  +T  +C+  +++        R+LS
Sbjct: 218 CGSWGMFVQSLKFVKEHGGNKSDISI---YGQEMTAQTLRLCLMNLML--------RELS 266

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            +I+ G++L  D F   +  + ++NPPF       +D  E     G+   FGP     +D
Sbjct: 267 FDIKLGNSLLDDKFPDLKVDFIIANPPFNVSNWHPEDLPE-----GDPRLFGPKEEFTTD 321

Query: 334 GS------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           G+        F  HL++         G A IV+++  + +   G
Sbjct: 322 GNANYMWMQTFWHHLSDT--------GTAGIVMANGAMTSNTKG 357


>gi|319951808|ref|YP_004163075.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237]
 gi|319420468|gb|ADV47577.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237]
          Length = 552

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 142/359 (39%), Gaps = 82/359 (22%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDR- 153
           RNN+  +I   +D   + F  +   + +  +EK  LL +  K    I  E+  D    + 
Sbjct: 126 RNNVFPHIKDLNDETSS-FTKY-MKNAVFIIEKPSLLVEAIKKVDEIFLEIAEDAKDGKQ 183

Query: 154 ----VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               +  ++YE L++   +    G   F TPR ++ L   L            P +   +
Sbjct: 184 SFQDIQGDVYEMLLKEIATAGKNGQ--FRTPRHLIKLLAELT----------EPKLGHKI 231

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP--------------------------H 243
            DP CGTGGFL  A  ++       K P +LV                           +
Sbjct: 232 ADPACGTGGFLLGAYQYILSDLVRQKEPDLLVADEDGFERASISSVLDKKNKQILNDSFY 291

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G +++     + +  +++  ++       + +I+   +LSK+      +   L+NPPF  
Sbjct: 292 GFDIDTTMVRLGLMNLMMHGID-------NPHIEYKDSLSKNYNETGDYDIVLANPPFTG 344

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLS 361
           K +K              G   P L  I  GS  +LFL  ++  L      GG+AA+++ 
Sbjct: 345 KLDK--------------GDVNPDL-GIDTGSTELLFLARISKML----RAGGKAAVIIP 385

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-----FRTNIATYLWILSNRKT 415
              LF G     +   R  LL+++ +EA+++LP   F      +T I  +  +  + KT
Sbjct: 386 EGVLFGG--SKAQKATREILLKDNQLEAVISLPAGAFKPYTGVKTAILVFTKVEEDSKT 442


>gi|198282969|ref|YP_002219290.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666304|ref|YP_002425172.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247490|gb|ACH83083.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518517|gb|ACK79103.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 489

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 138/323 (42%), Gaps = 68/323 (21%)

Query: 111 AKAIFED---FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRF 166
            +++FED   +  S T+ R     ++ KIC      E+  +   DR    +IYE ++R  
Sbjct: 108 VRSVFEDAYNYMKSGTLMR----QVINKIC------EIDFNNSGDRHTFGSIYEQILRDL 157

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S  + G  +F TPR V                + +P +  T+ DP CGTGGFLT A++H
Sbjct: 158 QSAGNAG--EFYTPRAVTRFIVN----------RVNPRLEETVLDPACGTGGFLTCAIDH 205

Query: 227 VADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
             +    H +         +    G E +   H + V  M++  +      D   +I+  
Sbjct: 206 KRE----HYVKTREDEETLVNTIRGFEKKALPHMLAVTNMILHGI------DTPTHIRHD 255

Query: 280 STLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +TLS   KD     R +  ++NPPFG     ++D +E            P   +  + + 
Sbjct: 256 NTLSRPYKDYGNADRVNVIITNPPFGG---MEEDGIENNF---------PAHLRTRETAD 303

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPT 395
           LF+  +   L+      GRAAIVL    LF    G G ++ +++ LLE   +  IV LP 
Sbjct: 304 LFMALVIKLLK----DQGRAAIVLPDGFLF----GEGMKTRLKQILLEECNLHTIVRLPN 355

Query: 396 DLFF-RTNIATYLWILSNRKTEE 417
            +F   T I T L   +  K  E
Sbjct: 356 GVFAPYTGIKTNLLFFTKGKPTE 378


>gi|304383190|ref|ZP_07365663.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella marshii DSM 16973]
 gi|304335661|gb|EFM01918.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella marshii DSM 16973]
          Length = 473

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 146/376 (38%), Gaps = 68/376 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +           P +  T+ DP 
Sbjct: 129 VKGAIYEGILEKNGQDKKSGAGQYFTPRPLIQAMVDCI----------KPKIGETVCDPA 178

Query: 214 CGTGGFLT---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL    D M   +      +       HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDCMKQQSQDKDKREFLNNKALHGVDNTPLVVTLASMNLYLHGIGTD--- 235

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
                I    +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 236 --RSPIACEDSLEKEPDT--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+VL  + LF G  G+GE+ IR+ LL +  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVLPDNVLFEG--GAGET-IRKKLLSDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+            D+W        K  +  
Sbjct: 330 LHTILRLPTGIFYAQGVKANVLFFTKGQPTK------------DIWFYDYRTDVKHTLAT 377

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL--DKTGLARLEADIT 503
           +  +R  LD +V+       R+  Y     R  +  R   +  IL  DKT L     DIT
Sbjct: 378 NKLQRHHLDDFVACYTAN-PRVETYNEDTARDGR-WRKYEVEDILARDKTSL-----DIT 430

Query: 504 WRKLSPLHQSFWLDIL 519
           W K     + F LD L
Sbjct: 431 WIKAGGEEEQFTLDEL 446


>gi|298674148|ref|YP_003725898.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287136|gb|ADI73102.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 482

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 136/328 (41%), Gaps = 60/328 (18%)

Query: 112 KAIFEDFDFSST-IARLEKAGLLYK-ICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGS 168
           K +F+  DF S  +  +     ++K I  + S IEL+ + + P+     ++         
Sbjct: 98  KGVFDSLDFESNELGNVHHKNEIWKSIIDSLSSIELYNENLEPNYDFERLF--------- 148

Query: 169 EVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
                  D  TPR + +L   LL +D D            T+Y+P C  G FL  + N++
Sbjct: 149 -------DVFTPRKLAYLVVKLLNIDKD-----------MTVYEPFCTLGTFLVRSGNYI 190

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST------ 281
            +C      P +   +GQ    E     +  +                ++ G+       
Sbjct: 191 KECTGEFDEPYL---YGQSPNKEYRLTTMLNLYFNDF-------FKAQVKSGNLIFNPQF 240

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L++D    ++F   L + P  K W  +        K     RF  G+P    G   ++ H
Sbjct: 241 LTEDGDGVRKFDRVLGSYPIIKDWGYEF------AKYDPYRRFSYGVPPQKKGDYAYIEH 294

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFR 400
           +   L+      G   +++ ++ L   R    E++I++ +L+ +DLIE++++LP  +   
Sbjct: 295 MVASLK----KDGMMGVLVPNNSL--SRTNEKETKIKQLMLKRDDLIESVISLPPKVLRS 348

Query: 401 TNIATYLWILSNRKTEERRGKVQLINAT 428
           T  +  L I++  K EERR +V  I+A+
Sbjct: 349 TATSYSLLIINKNKREERRNQVLFIDAS 376


>gi|207092295|ref|ZP_03240082.1| type I restriction enzyme M protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 543

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + S+      ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNSDKGGKYAEYYTPLSIASIIAKLLIN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLKNAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD + GK   Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKD-YKGK-MDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SHKGKGAIIVPTGFI---SAKSGVENKIVRHLVDERLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKT-PSEDEVVLIDASKLGEEYTENKNKKTRLRTSD 455


>gi|319955096|ref|YP_004166363.1| site-specific DNA-methyltransferase (adenine-specific)
           [Cellulophaga algicola DSM 14237]
 gi|319423756|gb|ADV50865.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Cellulophaga algicola DSM 14237]
          Length = 476

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 48/299 (16%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           + S  AK I   FD   T   ++   L  ++    + I+ + D+    V +++YE +++ 
Sbjct: 97  TLSPQAKIIRSVFD--DTYNFMKNGTLFRQVINVINQIDFN-DSKESHVFNDLYETILKD 153

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             S  S G  ++ TPR V      ++          +P +  ++ DP CGTGGFLT  ++
Sbjct: 154 LQSAGSSG--EYYTPRAVTQFMVDII----------NPQLGESVLDPACGTGGFLTCTID 201

Query: 226 HVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           HV +    +    +L     G E +P  H +C   +++         DL   +++ + LS
Sbjct: 202 HVRNQVKDYTQRDVLQKSIRGIEKKPLPHLLCTTNLMLHGF------DLPV-VRRDNLLS 254

Query: 284 K---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           K   D     +    LSNPPFG         VE++   G    F P   +  + + LFL 
Sbjct: 255 KPYADWGAKDKLDIILSNPPFG--------GVEED---GTETNF-PKKFRTKETADLFLA 302

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
            +   L+      GR AIVL    LF    G G ++ ++  LL+   +  IV LP  +F
Sbjct: 303 LIIKLLK----DKGRCAIVLPDGTLF----GEGMKTRLKEELLDKCNLHTIVRLPNGVF 353


>gi|307638193|gb|ADN80643.1| typeI restriction-modification system DNA-methyl transferase
           subunit M [Helicobacter pylori 908]
 gi|325996788|gb|ADZ52193.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
 gi|325998380|gb|ADZ50588.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           2017]
          Length = 301

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 56/336 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L + +W  A+ L G    +++   +L    L                KY++    N +
Sbjct: 6   SELYSSLWAGADSLRGGMDASEYKNYVLNLLFL----------------KYISDKAKNNN 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFEDFDFSSTIAR 126
             S ++V    FY   E  L+  G     + L   IA  +  ++ K + +  DF+     
Sbjct: 50  F-SEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNTKL 105

Query: 127 LEKAGL---LYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   +   L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 106 GEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L + L          E+    +++YDPTCG+G  L  A +     G        L  
Sbjct: 166 VSLLLSLL------LGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKKG--------LTI 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----KRFHYCL 296
           +GQE +  T A+C   M++           + +I +G  STLS  LF      K F Y +
Sbjct: 212 YGQEKDISTTALCKMNMIL-------HNSATADIAKGGFSTLSNPLFIKNGMLKTFDYVV 264

Query: 297 SNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLP 329
           +NPPF  K   D  +++ + K        RF  G P
Sbjct: 265 ANPPFSLKNWTDGLSIDPKSKAVVGDSFNRFEDGTP 300


>gi|251791238|ref|YP_003005959.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           zeae Ech1591]
 gi|247539859|gb|ACT08480.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           zeae Ech1591]
          Length = 533

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 107/269 (39%), Gaps = 48/269 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  SE   GA  + TPR +++     +           P     + DP  
Sbjct: 136 LGDLYEGLLEKNASETKSGAGQYFTPRPLINSMVRCI----------KPQAGEVIQDPAA 185

Query: 215 GTGGFLTDAMNHVADCGS--------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  A   +    +          +        G EL P T  + +   L+  +E 
Sbjct: 186 GTAGFLIAADQFIKQLTNSLYELDLKQQEFQRKKAFIGIELVPSTRRLALMNCLLHNMEG 245

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRF---HYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           D        + QG+ L      G R       L+NPPFG              K GE   
Sbjct: 246 DDE----GVVHQGNALG---MAGSRLPNADVILANPPFGTS------------KGGEASI 286

Query: 324 FGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               L  K S+  + FL H+   L+     GGRAA+VL  + LF   AG G ++IRR L+
Sbjct: 287 TRDDLTFKTSNKQLAFLQHIYRNLK----PGGRAAVVLPDNVLF--EAGVG-TDIRRDLM 339

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILS 411
               +  I+ LPT +F+   + T +   S
Sbjct: 340 NKCNLHTILRLPTGIFYAQGVKTNVLFFS 368


>gi|15669405|ref|NP_248215.1| type I restriction-modification enzyme 1 subunit M
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2496162|sp|Q58617|Y1220_METJA RecName: Full=Uncharacterized adenine-specific methylase MJ1220
 gi|1592326|gb|AAB99225.1| type I restriction-modification enzyme 1, M subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 578

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 36/307 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE  +  F    ++  E + TP +V  L   L+   DD            + DP 
Sbjct: 229 ILGDAYEWTLNYFAPTKAKEGEVY-TPIEVSKLIAHLVEPKDD----------EVILDPA 277

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--- 270
           CG+G  L +        GS+    P +V  GQE    T  +     ++  +     +   
Sbjct: 278 CGSGSMLIEQYRF---AGSN----PNIVLVGQERNDVTAVLAKLNFILHGINLKDAKVFI 330

Query: 271 -DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            D   N +  S + +   TGK     ++NPP+ +    D++ ++   K  ++  +G    
Sbjct: 331 GDSLLNPKFESFIXEVKGTGKA-DKVVANPPWNQDG-YDENTLKVNEKYKDIYMYGFPNK 388

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             +D + + L++   +         +A IVL S  LF G     E  IR+  +++DLIEA
Sbjct: 389 NSADWAWVQLINYYTE--------KKAGIVLDSGALFRG---GKEKTIRKRFVDDDLIEA 437

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +V LP  LF+       + IL+  K EER+GK+  INA++ +     E KK   ++D+  
Sbjct: 438 VVLLPEKLFYNCPAPGIILILNKNKPEERKGKILFINASNEYIK-HPEVKKLNKLSDENI 496

Query: 450 RQILDIY 456
            +I   Y
Sbjct: 497 EKIAKAY 503


>gi|300114984|ref|YP_003761559.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299540921|gb|ADJ29238.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 483

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 44/259 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +   +YD   
Sbjct: 157 LSHLYETKIKNMGNAGRNGGE-YYTPRPLIRALIQVI----------QPKIGERIYDGAV 205

Query: 215 GTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+ GFL +A  H+   AD  S  +       +G+E +   + + +  M++  +E+     
Sbjct: 206 GSAGFLCEAYEHLRPQADSVSQLQTLQSRTFYGKEKKSLAYVIGIMNMILHGIEA----- 260

Query: 272 LSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              NI   +TL+   +D     RF   L+NPPFG K  K            E+ +  P  
Sbjct: 261 --PNILHTNTLAENIRDWQEKDRFEVILANPPFGGKERK------------EVQQNFP-- 304

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K  + + LFL H    L+     GGRAA+V+ ++ L N    S    +R+ LLE+  + 
Sbjct: 305 IKTGETAFLFLQHFIKTLK----AGGRAAVVIKNTFLSNSDNAS--RALRKELLESCNLH 358

Query: 389 AIVALPTDLFFRTNIATYL 407
            ++  P   F    + T +
Sbjct: 359 TVLDCPGGTFLGAGVKTVV 377


>gi|255527615|ref|ZP_05394477.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296187658|ref|ZP_06856052.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
 gi|255508687|gb|EET85065.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296047615|gb|EFG87055.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
          Length = 498

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 129/305 (42%), Gaps = 66/305 (21%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           +    +  + K  LL +  +   GI +   DT  D     +YE+L+ +    VS     F
Sbjct: 106 EMKDAVFMIPKPSLLQESVRIIDGINMEDADTKGD-----LYEYLLSKLA--VSGVNGQF 158

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----- 232
            TPR ++ +   L+          +P     + DP CGT GFL  ++ ++ +  +     
Sbjct: 159 RTPRHIIRMMVELM----------NPCAEDKICDPACGTAGFLVSSLEYILEKYTKPESI 208

Query: 233 --------HHKIPPILVP-----------HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
                   H+KI  ++             +G + +P    +    +++  ++       +
Sbjct: 209 FTDEEGVVHNKIGDMMSSEEWEHFRTSMFYGFDFDPSMVRIASMNLMLHSID-------N 261

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N+ Q  TLSK      ++   L+NPPF       K +++K    G++ +        + 
Sbjct: 262 PNMVQNDTLSKRYEEENKYTLVLANPPF-------KGSIDK----GDISKSLAAGASTTK 310

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+  +   L+L    GGR A+++    LF   +     +IR+ L+EN+ +E ++++
Sbjct: 311 TELLFMKLINRILDL----GGRCAVIVPDGVLFG--STKAHKDIRKNLIENNALEGVISM 364

Query: 394 PTDLF 398
           P+ +F
Sbjct: 365 PSGVF 369


>gi|126031631|pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
           Protein (Np_813429.1) From Bacteroides Thetaiotaomicron
           Vpi-5482 At 2.20 A Resolution
 gi|126031632|pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
           Protein (Np_813429.1) From Bacteroides Thetaiotaomicron
           Vpi-5482 At 2.20 A Resolution
          Length = 445

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 143/361 (39%), Gaps = 66/361 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      +          +P    T+ DP 
Sbjct: 130 VKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAXVDCI----------NPQXGETVCDPA 179

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A ++     +  +    L     HG +  P    +    + +  + +D   
Sbjct: 180 CGTGGFLLTAYDYXKGQSASKEKRDFLRDKALHGVDNTPLVVTLASXNLYLHGIGTDRSP 239

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
            + ++     +L K+  T       L+NPPFG +     D        E KN +L     
Sbjct: 240 IVCED-----SLEKEPST--LVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN---- 288

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H    L+     GGRAA+VL  + LF   AG+GE+ IR+ LL++  
Sbjct: 289 -----------FLQHXXLXLKT----GGRAAVVLPDNVLF--EAGAGET-IRKRLLQDFN 330

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+E            +W        K  +  
Sbjct: 331 LHTILRLPTGIFYAQGVKANVLFFSKGQPTKE------------IWFYDYRTDIKHTLAT 378

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   R  LD +VS  N +   + D       R +   P+      DKT L     DITW 
Sbjct: 379 NKLERHHLDDFVSCYNNRV-EIYDAENNPQGRWRKY-PVDEIIARDKTSL-----DITWI 431

Query: 506 K 506
           K
Sbjct: 432 K 432


>gi|146281848|ref|YP_001172001.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145570053|gb|ABP79159.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 440

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 49/252 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N+YE L+R   +  + G  +F TPR V      ++           P +   + DP CG
Sbjct: 97  GNLYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLDEKVMDPACG 144

Query: 216 TGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           TGGFLT  + H     V        +   +  +G E +P  H +    M++  +E     
Sbjct: 145 TGGFLTCTIEHKRSRYVKTAEDERTLQASI--YGVEKKPLPHLLATTNMILHGIE----- 197

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TL++ L +    +R    ++NPPFG     ++D +E         R    
Sbjct: 198 -VPNQIRHDNTLARPLISWGPKERVDCIVANPPFGG---MEEDGIETNFPAAFRTR---- 249

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL    
Sbjct: 250 --ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLTECN 296

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 297 LHTIVRLPNGVF 308


>gi|332661883|ref|YP_004451353.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332337380|gb|AEE54480.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 606

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 168/427 (39%), Gaps = 51/427 (11%)

Query: 11  LANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           L + +W  A+ L  +   K +++   IL    LR      +  +  +  +  A   S + 
Sbjct: 9   LEDTLWSAADKLRAESNLKSSEYATPILGLIFLRFASIRYQRVKPEIEAELKAQANSRMQ 68

Query: 69  L-ESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFS 121
             E+ + +A   FY   E    Y LS     +    ++  + +       + +    D  
Sbjct: 69  QPEAEIAIAKCGFYLPPEAQYDYLLSLPEEADIAKAIKHAMEAIEQYKPELLDSLPKDEY 128

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             +   E   L   + K F+ I   P+     V   +YE+ +  F     +G  +F TP 
Sbjct: 129 FKLYTTEDRSLPKSLLKIFANI---PEDASGDVFGKVYEYFLAEFALAEGQGGGEFFTPT 185

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPPI 239
            VV L   ++ +P             T++DP CG+GG    +   V       H      
Sbjct: 186 SVVKLMVEVI-EPYQG----------TIFDPACGSGGMFVQSSYFVDRRRAELHDTDTKD 234

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSN 298
           L+ +G E   +T  +    + +  L  +        I+  ++  +D +    RF Y L+N
Sbjct: 235 LMVYGVEKTADTVKLARMNLAVNGLRGE--------IRPANSYYEDPYDSLGRFDYVLAN 286

Query: 299 PPFGK--------KWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLEL 348
           PPF          K +   +A       G+  + G    +  + + + L++   A  L+ 
Sbjct: 287 PPFNVDDVNLDRVKHQPRFNAYGIPQNKGKSSKKGQDKDVNTVPNANYLWINLFATSLK- 345

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRAA+V+++S      A + E++IR+ L+ + +I+A++ LP ++F+   +   LW
Sbjct: 346 ---PTGRAALVMANSA---SDARNSEADIRQNLIRSGVIDAMLTLPKNMFYTVTLPATLW 399

Query: 409 ILSNRKT 415
                + 
Sbjct: 400 FFDKSRA 406


>gi|325677597|ref|ZP_08157254.1| hypothetical protein CUS_4322 [Ruminococcus albus 8]
 gi|324110707|gb|EGC04866.1| hypothetical protein CUS_4322 [Ruminococcus albus 8]
          Length = 113

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 13 NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
          NFIW  A  L G ++   +  VI+P  ++RR ECALE T+ AV E+Y          ++ 
Sbjct: 22 NFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYKK--NPAYPAKAM 79

Query: 73 VKVAGYSFYNTSEYSLSTL 91
           +V+GY F+NTSEY+L+ L
Sbjct: 80 CRVSGYQFFNTSEYTLAEL 98


>gi|184155502|ref|YP_001843842.1| putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum IFO 3956]
 gi|183226846|dbj|BAG27362.1| putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum IFO 3956]
 gi|299783284|gb|ADJ41282.1| Putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum CECT 5716]
          Length = 457

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 38/237 (16%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YD T G GG L +    + +      +       GQEL  + +  C   M++  L+ D 
Sbjct: 168 IYDSTSGWGGSLLEMRRVIPNSRKVRLL-------GQELNAKAYLFC--EMVLGLLDDD- 217

Query: 269 RRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEK--EHKNGELGRFG 325
             + S  +  G  L  D  F        +++PP+  +W  D + +E+   HK G L    
Sbjct: 218 --NTSHALNNGDALVADWPFGDSGADVIINDPPYSMRWNPDPNLLERGIYHKIGVL---- 271

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
              P  S     F++H    L    N  G   I L    LF G   S E++IR++LLE +
Sbjct: 272 ---PPKSRADFAFVLHGLAHL----NDNGTMVIQLPHGVLFRG---SAEAKIRQYLLERN 321

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            IEA++ LP +L   T I T + +L  RK  +R+  V  I+A+D      +E KK R
Sbjct: 322 YIEAVIGLPANLQSTTAIPTMILVL--RKNRKRKD-VLFIDASD------DEVKKAR 369


>gi|317177250|dbj|BAJ55039.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 543

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIASIIAKLLIN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SNKGKGAIVVPTGFI---SAKSGIENKIVRHLVDEKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +KT    G V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKTPSEDGVV-LIDASKLGEEYTENKNKKTRL 451


>gi|91217497|ref|ZP_01254456.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Psychroflexus torquis ATCC 700755]
 gi|91184382|gb|EAS70766.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Psychroflexus torquis ATCC 700755]
          Length = 485

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 135/314 (42%), Gaps = 53/314 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G + + TPR ++     ++           P +   +YD   
Sbjct: 157 LSHLYETKIKNMGNAGRNGGQ-YYTPRPLIRAMIKVV----------DPQIGEKVYDAAA 205

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++         + K       +G+E +   + + +  M++  +E+    
Sbjct: 206 GSCGFLVEAYDYMYQRMDKTTDNLKTLQEDTLYGKEKKNLAYVIGIMNMILHGIEA---- 261

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL    +D+    R+H  L+NPPFG K E+ +     + K GE       
Sbjct: 262 ---PNIVHTNTLGENIRDIQEKNRYHVILANPPFGGK-ERAEVQQNFDIKTGETAS---- 313

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                    LFL H    L++    GG+AAIV+ ++ L N  A +    +R+ LLE+  +
Sbjct: 314 ---------LFLQHFIKSLKI----GGKAAIVIKNTFLSN--ADNASISLRKHLLESCNL 358

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             I+ +P+  F    + T +      +  ++    QL        + RN GK    +ND+
Sbjct: 359 HTILDMPSGTFTGAGVKTVVLFFQKGEPTKKIWYYQL-------DAGRNMGKTNP-LNDE 410

Query: 448 QRRQILDIYVSREN 461
              + + IY  + N
Sbjct: 411 DMAEFITIYKEKSN 424


>gi|730885|sp|P07989|T1M_SALPO RecName: Full=Type I restriction enzyme StySPI M protein;
           Short=M.StySPI
 gi|154132|gb|AAA27143.1| restriction-modification enzyme type I M subunit [Salmonella
           enterica]
          Length = 529

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 55/265 (20%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           T GFL +A  +V                 +I    V  G EL P T  + +   L+  +E
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDAQDFQIKKAFV--GLELVPGTRRLALMNCLLHDIE 235

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +   D    I+ G+TL  D     +     +NPPFG                      G
Sbjct: 236 GN--LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA-------------------AG 274

Query: 326 PGLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             + +      S+  + F+ H+     LPP  GGRAA V+  + LF G  G   ++IRR 
Sbjct: 275 TNITRTFVHPTSNKQLCFMQHIIET--LPP--GGRAAAVVPDNVLFEGGKG---TDIRRD 327

Query: 381 LLENDLIEAIVALPTDLFFRTNIAT 405
           L++   +  I+ LPT +F+   + T
Sbjct: 328 LMDKCHLHTILRLPTGIFYAQGVKT 352


>gi|319757929|gb|ADV69871.1| putative HsdM [Streptococcus suis JS14]
          Length = 240

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 94/175 (53%), Gaps = 21/175 (12%)

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKL 346
           Y +SNPPF   + + +D VE    + E  RF  G+PKI +          LF+ H+ + L
Sbjct: 3   YIVSNPPFKLDFSEWRDQVESLPNSSE--RFFAGVPKIPNKKKESMAIYQLFIQHIIHSL 60

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +      G+AAIVL +  +    A SG + +IR+ L++  ++  +V++P+++F  T    
Sbjct: 61  K----EDGQAAIVLPTGFI---TAQSGIDKKIRQHLVDEKMLAGVVSMPSNIFATTGTNV 113

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            +  +  +  ++    V LI+A++L T ++    ++ +++ D+  QI+  ++++E
Sbjct: 114 SILFIDKKNKDD----VVLIDASNLGTKVKEGKNQKTVLSPDEESQIIQTFINKE 164


>gi|240047533|ref|YP_002960921.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae
           HRC/581]
 gi|239985105|emb|CAT05098.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae]
          Length = 546

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 153/327 (46%), Gaps = 57/327 (17%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++++E+L++ + +       ++ TP+ +  +   LL+       KE   +   +YDP+ G
Sbjct: 180 ADMFEYLLKDYNTNGGGKYAEYYTPQSIAKIMAKLLIGEQ----KEFNSI--EIYDPSAG 233

Query: 216 TGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TG  +  A++H   +  C            + Q++  +++ +    +++  L S  +   
Sbjct: 234 TGTLVM-ALSHSIGIDRC----------TIYTQDISQKSNKMLKFNLILNGLVSSLQ--- 279

Query: 273 SKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N  QG TL      S D  + ++F + +SNPPF   + + ++ +    +     RF  
Sbjct: 280 --NAIQGDTLTSPYHRSDDNKSLRQFDFVVSNPPFKLDFSETREKLSTMPE-----RFWG 332

Query: 327 GLPKI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G+PK+      SM    LF+ H+ N L+   N  G+ AIV+ +      ++G  ES+I +
Sbjct: 333 GVPKVPPTKKDSMAIYTLFIQHVINSLK---NETGKGAIVIPTG-FITSKSGV-ESKILK 387

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EG 438
            +++  ++   V++P+++F  T     +    N +  +   KV LI+A+ L    ++ + 
Sbjct: 388 RIVDEKIVYGCVSMPSNVFANTGTNVTVLFFDNARNHD---KVILIDASKLGEDYKDGKN 444

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFS 465
           KKRR+   D     +D+ ++  N K S
Sbjct: 445 KKRRLTEKD-----IDLIINTFNNKES 466


>gi|217033265|ref|ZP_03438696.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10]
 gi|216944206|gb|EEC23631.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10]
          Length = 543

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 129/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIASIIAKLLVN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
             S  SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNSYHSKE--CKGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    N  G+ A+V+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----NNKGKGAMVVPTGFI---SAKSGIENKIVRHLVDKKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + ++  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSVIFFKKT-PSEDEVILIDASKLGEEYTENKNKKTRLRGSD 455


>gi|219850152|ref|YP_002464585.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485]
 gi|219544411|gb|ACL26149.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485]
          Length = 537

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 117/290 (40%), Gaps = 50/290 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  + E    +F S          TPR VV L    L DP              + DP 
Sbjct: 168 VLGRVDEEGRSQFASAEGTQRGALTTPRCVVKLPVERL-DPYRG----------RVDDPC 216

Query: 214 CGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CG+ G    ++     H    G+  K    +  +GQE    T  +    + IR ++    
Sbjct: 217 CGSAGMFVQSVEFIRAHANGNGNGGKTGADISIYGQESNYTTWRLAKMNLAIRGIDG--- 273

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGL 328
                 I  G T   D F   +  + L+NPPF  K W  ++   +K        R+  G+
Sbjct: 274 -----QIAHGDTFHNDRFPDLKADFILANPPFNVKDWGGERLRDDK--------RWKYGV 320

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P + + +  ++  + +   L P G   A  VL++  + + R  SGE EIR+ ++E DL++
Sbjct: 321 PPVGNANFAWVQRIIH--HLAPTG--YAGFVLANGSMSSNR--SGEGEIRKHIIEADLVD 374

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKT-----------EERRGKVQLINA 427
            +VALP      T I   LW  S R T             RRG V+ I+A
Sbjct: 375 CMVALPGRRCSATQIPACLW-FSARDTSGRGGFGPHPSRNRRGHVRFIDA 423


>gi|261820962|ref|YP_003259068.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium wasabiae WPP163]
 gi|261604975|gb|ACX87461.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium wasabiae WPP163]
          Length = 529

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 41/258 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDA-------MNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A        N + D  +  +   I     G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKLQTNDLEDLDTDTQDFQIRRAFVGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D       H   +NPPFG                  + R    
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPLAHIVATNPPFGSA------------AGTNITR--TF 281

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   S+  + F+ H+   L    + GGRAA+V+  + LF G  G   ++IRR L+    +
Sbjct: 282 IHPTSNKQLCFMQHIIETL----HPGGRAAVVVPDNVLFEGGRG---TDIRRDLMNKCRL 334

Query: 388 EAIVALPTDLFFRTNIAT 405
             I+ LPT +F+   + T
Sbjct: 335 HTILRLPTGIFYAQGVKT 352


>gi|188527247|ref|YP_001909934.1| type I restriction enzyme M protein [Helicobacter pylori Shi470]
 gi|188143487|gb|ACD47904.1| type I restriction enzyme M protein [Helicobacter pylori Shi470]
          Length = 543

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLVN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKDL    +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKDL--KGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SDKGKGAIVVPTGFI---SAKSGIENKIVRHLVDEKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +KT     +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKT-PSANEVVLIDASKLGEEYTENKNKKTRL 451


>gi|308061791|gb|ADO03679.1| type I restriction enzyme M protein [Helicobacter pylori Cuz20]
          Length = 543

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIARIIAKLLIN--------EPTKSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKDL    +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKDL--KGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SDKGKGAIIVPTGFI---SAKSGVENKIVRHLVDEKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +KT     +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKT-PSANEVVLIDASKLGEEYTENKNKKTRL 451


>gi|294676867|ref|YP_003577482.1| type I restriction-modification system RcaSBIIIP subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294475687|gb|ADE85075.1| type I restriction-modification system RcaSBIIIP, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 481

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 50/252 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE L+    +  + G  ++ TPR V    TA +++  D      PG I  + DP CG
Sbjct: 142 GDIYEQLLNDLQNAGNAG--EYYTPRAV----TAFMVERIDP----RPGEI--VMDPACG 189

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-----EPETHAVCVAGMLIRRLESDPRR 270
           TGGFLT AM H+     H ++P       + L     +P  H +CV  ML+  +E     
Sbjct: 190 TGGFLTCAMRHMR--ARHIRLPEHEDAMQRSLRAVEKKPLPHMLCVTNMLLNGIEE---- 243

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                ++  +TL++ L +    +R    L+NPPFG    K++D +E              
Sbjct: 244 --PHFVRHDNTLARPLTSWTRDERVDIVLTNPPFGG---KEEDGIENNFPTF-------- 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL  +   L+     GGRAA+VL    LF    G G ++ ++  L+    
Sbjct: 291 --RTRETADLFLALIIRLLK----PGGRAAVVLPDGSLF----GEGIKTRLKEHLMAECN 340

Query: 387 IEAIVALPTDLF 398
           +  IV LP  +F
Sbjct: 341 LHTIVRLPNSVF 352


>gi|169347006|ref|ZP_02865948.1| 3D domain protein [Clostridium perfringens C str. JGS1495]
 gi|169296689|gb|EDS78818.1| 3D domain protein [Clostridium perfringens C str. JGS1495]
          Length = 487

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 137/310 (44%), Gaps = 47/310 (15%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +N +  +I +   N ++ +  +     I ++    +L KI    +GIE   +   +   
Sbjct: 88  VQNKVFPFIKNLHGNKESAYAKY-MGDAIFKIPTPLMLSKIVDGINGIEFKKE---NDTK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  S  + G   F TPR ++ +   L+        K +P  I  + DP  G
Sbjct: 144 GDLYEYLLSKLSSAGTNGQ--FRTPRHIIDMIVKLM--------KPTPEDI--IVDPAAG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  +  ++ D  +       L  H       G +++     +    M++  +++  
Sbjct: 192 SAGFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVDN-- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 NI+   +LS+     ++F   L+NPPF       K +++ E  + EL +    +
Sbjct: 250 -----PNIEYKDSLSEVNTDKEKFTLVLANPPF-------KGSLDYEAVSAELLK----V 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGR A ++    LF   +  G ++IR+ ++EN  +E
Sbjct: 294 TKTKKTELLFLALFLRILKT----GGRCASIVPDGVLFG--STKGHNDIRKEIVENHKLE 347

Query: 389 AIVALPTDLF 398
           AI+++P+ +F
Sbjct: 348 AIISMPSGVF 357


>gi|254425432|ref|ZP_05039150.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
 gi|196192921|gb|EDX87885.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
          Length = 524

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 141/319 (44%), Gaps = 47/319 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPT 213
           + I+E+LI+ +  +      ++ TP  V  +  A+L+ P+        G I+ +  YDP+
Sbjct: 183 ATIFEYLIKDYNKDSGGKYAEYYTPHAVAKIMAAILV-PE-----HQRGKIQNVSCYDPS 236

Query: 214 CGTGGFLTDAMNHVAD--CGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPR 269
            G+G  L +  + + +  C         + P    Q+         +   L+  ++    
Sbjct: 237 AGSGTLLMNIAHAIGEERCS--------IFPQDISQKSSSLLRLNLILNNLVHSIQ---- 284

Query: 270 RDLSKNIQQGSTL----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                N+ QG+TL     KD    K F Y +SNPPF   +   +D ++ +          
Sbjct: 285 -----NVIQGNTLLQPYHKDGKKLKLFDYIVSNPPFKMDFSDFRDDLDSDKNKKRFFAGI 339

Query: 326 PGLPKISDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           P +PK +   M    LFL H+     L P   G+AA+V+ +  L   +AG  + +IR  L
Sbjct: 340 PNVPKKAVNKMAIYQLFLQHII--FSLKPE--GKAAVVVPTGFL-TAQAGI-DKKIRMKL 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           ++  ++  +V++P+++F  T     +  +     E+    V LI+A+ L  + +    ++
Sbjct: 394 IDEKMLAGVVSMPSNIFATTGTNVSIVFIDKANKED----VVLIDASGLGETAKEGKNQK 449

Query: 442 RIINDDQRRQILDIYVSRE 460
            ++ + +  +I+  +  +E
Sbjct: 450 TVLTETEEEKIIATFNEKE 468


>gi|254517361|ref|ZP_05129418.1| type I restriction-modification system, M subunit [gamma
           proteobacterium NOR5-3]
 gi|219674199|gb|EED30568.1| type I restriction-modification system, M subunit [gamma
           proteobacterium NOR5-3]
          Length = 489

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 54/297 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   +  ++   L+ ++    + I+ + +T       +IYE +++   S  + G  +F T
Sbjct: 111 FDGALNFMKSGTLMRQVINKINEIDFN-NTENRHTFGDIYEKILKDLQSAGNAG--EFYT 167

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VADCGSHHK 235
           PR V    T L++D      + +P +   ++DP CGTGGFL+ A++H    V        
Sbjct: 168 PRAV----TRLIID------RLNPQLDEIVFDPACGTGGFLSCAIDHKQQFVRTSADRET 217

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRF 292
           +   L   G E +     +C+  M++  +      D    I   +TL+   KD     R 
Sbjct: 218 LARTL--RGVEKKSMPFNLCITNMILHGI------DTPTGIAHDNTLARPFKDYGDKDRV 269

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           H   +NPPFG     ++D +E            P   +  + + LF+  +   L +    
Sbjct: 270 HVIATNPPFGG---MEEDGIENNF---------PAQYRTRETADLFMALIIKLLRV---- 313

Query: 353 GGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
            GRA ++L    LF    G G +S I++ L+E   +  I+ LP  +F      +TNI
Sbjct: 314 NGRAGVILPDGFLF----GEGTKSSIKKDLIETCNLHTIIRLPGGVFNPYTGIKTNI 366


>gi|91217329|ref|ZP_01254289.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
 gi|91184437|gb|EAS70820.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
          Length = 479

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 51/306 (16%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           NL+  I+  +   +A+F+D     T   ++   L  ++    + I+ + ++    + +++
Sbjct: 93  NLDITISPQARIIRAVFDD-----TYNYMKNGTLFRQVINVINEIDFN-NSTDSHLFNDL 146

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   S  S G  ++ TPR V      ++          +P +  ++ DP CGTGG
Sbjct: 147 YETILKELQSAGSSG--EYYTPRAVTQFMVDMV----------NPQLGESVLDPACGTGG 194

Query: 219 FLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           FLT  ++HV           +L     G E +P  H +C   +++         DL   +
Sbjct: 195 FLTCTIDHVRAQVKDATDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGF------DLPV-V 247

Query: 277 QQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           ++ + LSK   D  T  +    LSNPPFG         VE++   G    F P   +  +
Sbjct: 248 RRDNLLSKPYADWGTKDKLDIILSNPPFG--------GVEED---GTETNF-PAKFRTKE 295

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
            + LFL  +   L+      GR AIVL    LF    G G ++ ++  LL+   +  IV 
Sbjct: 296 TADLFLALIIKLLK----NKGRCAIVLPDGTLF----GEGMKTRLKEELLDKCNLHTIVR 347

Query: 393 LPTDLF 398
           LP  +F
Sbjct: 348 LPNGVF 353


>gi|325973636|ref|YP_004250700.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
 gi|323652238|gb|ADX98320.1| type I restriction-modification system, N-6 DNA Methylase family
           protein [Mycoplasma suis str. Illinois]
          Length = 613

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 50/313 (15%)

Query: 135 KICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           KI K    I  H D T  D  + +IYE+ + +F S V      F TP  +V++    +L+
Sbjct: 141 KILKGLLEIFDHEDITWEDDKLGSIYEYFLEQFASYVKGEEGIFFTPPSLVNIIVN-ILE 199

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEP 249
           P             T+ DP CG+GG           H  +C  H      +   G E   
Sbjct: 200 PTQG----------TVLDPACGSGGMFIAIKQYMDKHNLNCNEH------ITFWGHEKVE 243

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
               +C+  + I  L S     ++      S  +       +  Y L+NPPF      + 
Sbjct: 244 HNARLCLMNIFIHHLGSGK---IAGGDDANSYYNDHWGLNGKCDYVLANPPF------NI 294

Query: 310 DAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             V  E      GR   GLP++S     + + L++ +  + L    N  G+A  V+ S  
Sbjct: 295 VGVNAEAAEAA-GRLPFGLPQVSKLEIKNANFLWISYFYSYL----NSTGKAGFVMPSIT 349

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +    +G+ + EIR  ++E   I+ ++ +    F   F+ +    LW  + +K +E   K
Sbjct: 350 M----SGTVDKEIRSKVVETKHIDLLINVAPKFFKSKFKGDCC--LWFFNKQKPQEYENK 403

Query: 422 VQLINATDLWTSI 434
           V  I+A++ +  +
Sbjct: 404 VLFIDASNYYVPV 416


>gi|325980942|ref|YP_004293344.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
 gi|325530461|gb|ADZ25182.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
          Length = 489

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 54/270 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+R    + +  A +F TPR V                + +P +   + DP 
Sbjct: 143 LFGDMYEQLLRDL--QAAGNAGEFYTPRAVTEFMVR----------RVNPRLGEKIMDPA 190

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  A+ H+      H +  +           G E +P  H +C   M++  +  
Sbjct: 191 CGTGGFLACAIEHM----RKHDVKTVDDETQLQASIFGIEKKPLPHLLCTTNMILHGI-- 244

Query: 267 DPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               D+   I+  ++LS+ L +    +R    ++NPPFG     ++D +E    +    R
Sbjct: 245 ----DVPITIRHDNSLSRPLISWTPKERVDVVVTNPPFGG---MEEDGIETNFPSAFRTR 297

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLL 382
                 + +D  ++ +M L     L P  GGRAA+VL    LF    G G ++ I+  LL
Sbjct: 298 ------ETADLFLVLIMQL-----LKP--GGRAALVLPDGFLF----GEGIKTRIKEKLL 340

Query: 383 ENDLIEAIVALPTDLFF-RTNIATYLWILS 411
           +   +  IV LP  +F   T I T L   S
Sbjct: 341 QECNLHTIVRLPNGVFSPYTGIKTNLLFFS 370


>gi|75675446|ref|YP_317867.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
 gi|74420316|gb|ABA04515.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
          Length = 484

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 115/255 (45%), Gaps = 50/255 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           R     YE L+    S  + G  ++ TPR V      ++ DP        PG I  L+DP
Sbjct: 142 RHFGEFYEQLLNDLQSAGNAG--EYYTPRAVTAFMVQMI-DP-------HPGEI--LFDP 189

Query: 213 TCGTGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            CGTGGFL+ A+NH     V       K+   L    ++  P  H +CV  ML+  +E D
Sbjct: 190 ACGTGGFLSCAINHMEANYVRTPKQREKMQGGLRAVEKKQLP--HMLCVTNMLLHGIE-D 246

Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           P       ++  +TL++ L +    +R    ++NPPFG    K++D +E           
Sbjct: 247 P-----SFVKHDNTLARPLISWSKDERVDIVVTNPPFGG---KEEDGIENNFPTF----- 293

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLE 383
                +  + + LFL  +   L+  P+  GRAA+VL    LF    G G ++ ++  L+E
Sbjct: 294 -----RTKETADLFLALIVRLLK--PD--GRAAVVLPDGTLF----GEGVKTRLKEHLME 340

Query: 384 NDLIEAIVALPTDLF 398
              +  IV LP  +F
Sbjct: 341 ECNLHTIVRLPNSVF 355


>gi|315608531|ref|ZP_07883516.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315249779|gb|EFU29783.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 505

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 141/317 (44%), Gaps = 59/317 (18%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
            K +FED +      +  K G+L +   N    E+  D   DR M  +IYE +++   S 
Sbjct: 113 VKEVFEDLN------QYMKNGILLRQVVNVIN-EIEFDDAADRHMFGDIYEGILKDLQSA 165

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-- 227
            + G  +F TPR +       L          SP +  T+ D T GTGGFLT A+N++  
Sbjct: 166 GNAG--EFYTPRALTDFIIQQL----------SPVLGETVGDFTSGTGGFLTSALNYLHK 213

Query: 228 ----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D G  ++   I    GQE +P  + + +  +L+  +E       S NI+   +L 
Sbjct: 214 QVKTTDDGRLYQQAVI----GQEWKPLPYLLSITNLLLHDVE-------SPNIRHCDSLG 262

Query: 284 ---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               D     + +    NPP+G       DA  K +   EL        + S+ + LF++
Sbjct: 263 TKMSDFKEEDKVNVIAMNPPYGGS----TDAASKSNFPMEL--------RSSETADLFMV 310

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
            +  +L+      GRAA+++    LF G  G+ +  I++ +L +  +  I+ LP  +F  
Sbjct: 311 LIMYRLK----ANGRAAVIVPDGFLF-GTDGA-KLAIKQKMLRDFNLHTIIRLPGSIFAP 364

Query: 400 RTNIATYLWILSNRKTE 416
            T+IAT +   +N + E
Sbjct: 365 YTSIATNILFFNNERAE 381


>gi|148549814|ref|YP_001269916.1| N-6 DNA methylase [Pseudomonas putida F1]
 gi|148513872|gb|ABQ80732.1| N-6 DNA methylase [Pseudomonas putida F1]
          Length = 489

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 49/254 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   +  + G  +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQNAGNAG--EFYTPRPVTEFMVRMV----------DPKLDEKVMDPA 190

Query: 214 CGTGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFLT ++ H     V        +   +   G E +P  H +    M++  +E   
Sbjct: 191 CGTGGFLTCSIEHKRKRYVQTAEDERALQASIF--GVEKKPLPHLLATTNMILHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
              +   I+  +TL + L +    +R    ++NPPFG     ++D +E         R  
Sbjct: 246 ---VPNQIKHDNTLGRPLISWGPAERVDCIVANPPFGG---MEEDGIETNFPTAFRTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
               + +D  ++ +MHL          GGRAA+VL    LF    G G +S I+  LL  
Sbjct: 298 ----ETADLFLVLIMHLLKD-------GGRAAVVLPDGFLF----GEGIKSRIKEKLLAE 342

Query: 385 DLIEAIVALPTDLF 398
             +  IV LP  +F
Sbjct: 343 CNLHTIVRLPNGVF 356


>gi|116250871|ref|YP_766709.1| type I restriction enzyme modification methylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255519|emb|CAK06596.1| putative type I restriction enzyme modification methylase subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 411

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 54/298 (18%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++   E   GA  + TPR ++ L   L+        +  PG +  + DP  G
Sbjct: 155 GDLYEGLLQKNAEETKRGAGQYFTPRVLIELLVRLM--------QPKPGEV--IQDPAAG 204

Query: 216 TGGFLTDA---MNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TGGFL  A   M  V D          +       HG E  P T  + +  + +  ++SD
Sbjct: 205 TGGFLIAADRYMRAVTDNYFDLGRKQQEFQKRHAFHGMENVPGTLRLLLMNLYLHNIDSD 264

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRF 324
                  ++  G TLS       R +  L+NPPFG       +D  +V            
Sbjct: 265 -------HVDLGDTLSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSVTA---------- 307

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLE 383
                 +S   + F+ H    L+     GGRAAIV+  + LF +GR      ++R+ +++
Sbjct: 308 -----TVSSYQLPFVEHCIRALQ----PGGRAAIVVPDNVLFEDGRG----RQLRQMMMD 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
              +  I+ LPT +F+   + T +  L+  KTE   G  +   +T      RN  + R
Sbjct: 355 WCDVHTILRLPTGIFYAQGVKTNVIFLTRAKTET--GTQRPCGSTTCAPRCRNLARPR 410


>gi|315586430|gb|ADU40811.1| type I restriction enzyme M protein [Helicobacter pylori 35A]
          Length = 543

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 130/295 (44%), Gaps = 42/295 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIASIIAKLLIN--------EPTQNVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +     
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAI----- 288

Query: 278 QGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           +G+TL+    + K      Y +SNPPF   +  +   + +   +  LG   P +PK    
Sbjct: 289 EGNTLTNPYHSKKCKGEMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKS 346

Query: 335 SM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEA 389
            M    LF  H  N L    N  G+ AIV+ +  +    A SG E++I R L++  L+  
Sbjct: 347 KMPIYTLFFQHCLNML----NNKGKGAIVVPTGFI---SAKSGVENKIVRHLVDEKLVYG 399

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           ++ +P+ +F   N  T + ++  +KT     +V LI+A+ L      N+ KK R+
Sbjct: 400 VICMPSQVF--ANTGTNVSVIFFKKT-PSANEVVLIDASKLGEEYTENKNKKMRL 451


>gi|227511525|ref|ZP_03941574.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085259|gb|EEI20571.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
          Length = 343

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 26/173 (15%)

Query: 109 DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           D+ K +FED D +S     T+A  E++ L+ K+  N + I+ H + +   V+ + YE+LI
Sbjct: 133 DDFKGLFEDMDLASSRLGSTVA--ERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLI 190

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +  TP+ V  + + L+      L +E    +RT+YDPT G+G  L   
Sbjct: 191 GQFAATAGKKAGELYTPQQVSKVLSQLV-----TLNREE---VRTVYDPTMGSGSLLL-- 240

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
                  G + K+      +GQEL   T+ +    ML+  +    R DL + I
Sbjct: 241 -----RVGDYAKVAEY---YGQELNGTTYNLARMNMLMHGINY-SRFDLRQEI 284


>gi|154244736|ref|YP_001415694.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
 gi|154158821|gb|ABS66037.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
          Length = 710

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 124/298 (41%), Gaps = 51/298 (17%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFG 167
           D   A+F D    +T      +G + +   N    ++H D+  D + +  +YE L+R   
Sbjct: 136 DVVSAVFRDLRNYAT------SGYVLRDVINLVN-DIHFDSTEDIQTLGRMYETLLREMR 188

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +  E F TPR VV     ++           P +  T+ DP CGTGGFL  A +H+
Sbjct: 189 DAAGQNGE-FYTPRPVVRFMVQVI----------DPKLSETVLDPACGTGGFLAAAFDHM 237

Query: 228 ---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
              AD     +I       G E       +    +L+  LE       + +I+ G+ L  
Sbjct: 238 KPSADTVEKREILQRSTLRGGEDSSLPFLLAQMNLLLHGLE-------APDIEFGNALRF 290

Query: 284 --KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              ++    R    L+NPPFG            E + G L  F P   + ++ ++LFL  
Sbjct: 291 KLTEIGERDRVEVILTNPPFG-----------GEEEAGILTNF-PDDRRTAETALLFLQL 338

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           +  +L+    G GRA +V+ +  LF    G G  + I+  LLE   +  IV LP   F
Sbjct: 339 IMRRLKR--GGHGRAGVVVPNGILF----GDGIAARIKADLLEQFNLHTIVRLPEGTF 390


>gi|75674467|ref|YP_316888.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
 gi|74419337|gb|ABA03536.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
          Length = 519

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 128/316 (40%), Gaps = 60/316 (18%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI------ELHPDTVPDR 153
           L +  +S  DN + +     F     R++   LL  I     GI      ELH       
Sbjct: 124 LRALSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIINKVGGIHFTSSDELH------- 175

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  +YE ++R       +  E F TPR VV     +            P +  T+ DP 
Sbjct: 176 TLGALYESMLREMRDAAGDSGE-FYTPRAVVRFMVEVT----------DPRLGETVLDPA 224

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GTGGFL +  NH    V       ++    +  G E +   + +C   +L+  L+    
Sbjct: 225 SGTGGFLVETYNHLEKQVKTVADRKRLQDETI-TGCEPKSLPYLLCQMNLLLHGLD---- 279

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              +  I  G+ L     ++   +R    L+NPPFG + EK           G  G F P
Sbjct: 280 ---APQIDPGNALRFKLSEIGEKERVDVILTNPPFGGEEEK-----------GIQGNF-P 324

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGE-SEIRRWLL 382
              + ++ ++LFL  +  KL+  P   G   RAA+V+ +  LF    G G  + I+  LL
Sbjct: 325 EDRQTAETALLFLQLIMRKLKRQPTSVGRPARAAVVVPNGTLF----GDGVCARIKEELL 380

Query: 383 ENDLIEAIVALPTDLF 398
           ++  +  IV LP  +F
Sbjct: 381 KDFNLHTIVRLPNGVF 396


>gi|167854766|ref|ZP_02477544.1| glucose-inhibited division protein B [Haemophilus parasuis 29755]
 gi|167854064|gb|EDS25300.1| glucose-inhibited division protein B [Haemophilus parasuis 29755]
          Length = 515

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 155/381 (40%), Gaps = 74/381 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+ +  +E   GA  + TPR +++     +          +P +   + DP  
Sbjct: 139 LGDLYEGLLEKNATETKSGAGQYFTPRALINSMVRCI----------NPVVGEVIQDPAA 188

Query: 215 GTGGFL----------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           GT GFL          TD    +++   H +I       G EL   T  + +   L+  +
Sbjct: 189 GTAGFLIAADQYMRNKTDDYFDLSEQDRHFQIHEAF--KGVELVTNTRRLALMNCLLHGI 246

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD----KDAVEKEHKNGE 320
           E          + QG++L       K     L+NPPFG     D    +D +  E  N +
Sbjct: 247 EGGSE----GAVIQGNSLGDVGKNLKPADIILANPPFGTSKGGDAVITRDDLTFETTNKQ 302

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L                FL H+   L+     GGRAA+VL  + LF   AG G ++IR+ 
Sbjct: 303 LA---------------FLQHIYRNLK----EGGRAAVVLPDNVLF--EAGKG-TDIRKD 340

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L++   +  I+ LPT +F+   + T + +  ++ + +     Q     DL T++ + GK+
Sbjct: 341 LMDKCHLHTILRLPTGIFYAQGVKTNV-LFFDKVSNDAENSTQKTWVYDLRTNMPSFGKR 399

Query: 441 -----------RRIIN----DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
                       ++ N    D  +  I  I  +R+ G++S     +T    R K      
Sbjct: 400 TPFTEKYLEAFEKVFNPTELDVNKANITMILSARQEGEWSYTEGEQTAENSRWKC---FD 456

Query: 486 MSFILDKTGLARLEADITWRK 506
            ++I D  G +    DI+W K
Sbjct: 457 RTYIRDVKGDS---LDISWLK 474


>gi|197334342|ref|YP_002156837.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
 gi|197315832|gb|ACH65279.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
          Length = 485

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 115/269 (42%), Gaps = 53/269 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P + +T+YD   
Sbjct: 156 LSHLYETKIKNMGNAGRNGGE-YYTPRPLIRAMIDVI----------QPKIGQTIYDGAA 204

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLES 266
           G+ GFL +A +++   G+  K               + +E +   + + +  M++  +E+
Sbjct: 205 GSAGFLCEAFDYLRKGGAEKKKLTTAELDTLQKRTFYAKEKKSLAYVIAIMNMILHGIEA 264

Query: 267 DPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                   N+   +TL+   KDL   +R+   L+NPPFG           KE K  ++  
Sbjct: 265 -------PNVVHTNTLAENIKDLQDSQRYDIVLANPPFGG----------KERKEVQM-- 305

Query: 324 FGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                P K  + + LFL H    L      GG+AAIV+ ++ L N  A    + +R+ LL
Sbjct: 306 ---NFPIKTGETAFLFLQHFIKTLR----PGGQAAIVIKNTFLSNSDA----TAVRKELL 354

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILS 411
           +   +  ++  P   F    + T +   +
Sbjct: 355 QTCNLHTVLDCPAKTFLGAGVKTVVLFFT 383


>gi|307945076|ref|ZP_07660412.1| type I restriction-modification system DNA methylase [Roseibium sp.
           TrichSKD4]
 gi|307770949|gb|EFO30174.1| type I restriction-modification system DNA methylase [Roseibium sp.
           TrichSKD4]
          Length = 722

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 128/297 (43%), Gaps = 45/297 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE+ +  F  + +    +F TP  +V      +++PD  +          ++DP 
Sbjct: 156 VFGRIYEYFLAEFSKQGAHDNGEFFTPPSIVQTIVN-VIEPDHGI----------IFDPA 204

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR---- 269
           CG+GG    + + +   G        +  +G E    T  +    + +  L+   +    
Sbjct: 205 CGSGGMFVQSSHFIEHEGK--DTMKRVTFYGHEKNETTAKLAQINLAVHGLQGSIQAGNE 262

Query: 270 -----RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGR 323
                +D  + IQ     + D   GK   + ++NPPF      + D V+ E  KN     
Sbjct: 263 AITYYKDPHELIQHDK--NADRVIGK-CDFVMANPPF------NVDEVDAEKVKNDPRLP 313

Query: 324 FG-PGL---PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           FG PG+    K+S+ + L++ +  N L+      GRA +V+SS       AG  E+++R+
Sbjct: 314 FGLPGVNKAKKVSNANFLWMSYFYNYLK----DTGRAGVVMSSQA---SSAGRDEAKVRQ 366

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT--EERRGKVQLINATDLWTSI 434
            L+E   ++ ++ +  + F+   +   LW     K   E R+  V +++A +++  +
Sbjct: 367 KLVETGAVDVMIDIRGNFFYTRTVPCQLWFFDRAKEADEARKDHVLMLDARNIYRKV 423


>gi|291526086|emb|CBK91673.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale DSM 17629]
          Length = 486

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 49/284 (17%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I ++  A +L KI      +EL  +        ++YE+L+ +  +  + G   F TPR 
Sbjct: 114 AIFKIPTAAMLSKIVDGIDKLELGDEDSK----GDLYEYLLSKVATAGTNGQ--FRTPRH 167

Query: 183 VVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           ++ +   L+   PDD           T+ DP  G+ GFL +A +++ +      +    +
Sbjct: 168 IIKMMVELVKPSPDD-----------TIIDPAMGSAGFLIEAQSYLRENHPELFLHKESL 216

Query: 242 PH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            H       G +++     +    ML+  +E+        NI    +LS+     +++  
Sbjct: 217 EHFNNTMFYGNDMDRTMLRIGAMNMLLHGVEN-------PNISYRDSLSEQNTDVEKYSL 269

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF       K +++ E  + +L +    + K     +LFL      L+     GG
Sbjct: 270 VLANPPF-------KGSLDYEAVSADLLK----VTKTKKTELLFLALFLRILK----KGG 314

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           RAA+++    LF   +     +IR+ ++EN+ ++A++++P+ +F
Sbjct: 315 RAAVIVPDGVLFG--SSKAHKQIRKEIIENNKLDAVISMPSGVF 356


>gi|294677466|ref|YP_003578081.1| type I restriction-modification system RcaSBIV subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294476286|gb|ADE85674.1| type I restriction-modification system RcaSBIV, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 482

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 46/271 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE  IRR G+    G E + TPR ++    A++           P +  T+YD   
Sbjct: 156 LSALYETRIRRMGNAGRNGGE-YYTPRPLIRAMIAVV----------DPQIGETIYDGAV 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+ GFL +A +++       S ++       +GQE +   + + +  M++  +E      
Sbjct: 205 GSAGFLCEAYDYLRRPDLSASDYETLQRRTFYGQEKKSLAYVIGIMNMVLHGIE------ 258

Query: 272 LSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            + NI   ++L++   D+    R    L+NPPFG                GE        
Sbjct: 259 -APNIVHTNSLNENVLDIQEKDRHDIVLANPPFG---------------GGERREVQQNF 302

Query: 329 P-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           P K  + + LFL H   KL      GGRAA+V+ ++ L N    S    +RR LL+   +
Sbjct: 303 PIKSGETAYLFLQHFIRKL----RAGGRAAVVIKNTFLSNTDNAS--VALRRELLDTCNL 356

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEER 418
             ++  P   F    + T +         ER
Sbjct: 357 HTVLDCPQGTFQGAGVKTVVLFFEKGAPTER 387


>gi|58583086|ref|YP_202102.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58427680|gb|AAW76717.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 514

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 120/303 (39%), Gaps = 54/303 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIHCIKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDALYGPDVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +     +  I+ G++L          +  LSNPPFG                   G  
Sbjct: 237 HGEG----AGPIRLGNSLGTAGRDLPPANIILSNPPFGTAK----------------GGG 276

Query: 325 GPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           GP       K S+  + FL H+   L      GGRAA+VL  + LF   AG G +EIRR 
Sbjct: 277 GPTRDDLTYKTSNKQLAFLQHIYRGL----TPGGRAAVVLPDNVLF--EAGLG-TEIRRD 329

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE 437
           L++   +  ++ LPT +F+   + T +           R       AT   DL +++ N 
Sbjct: 330 LMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAANPRQDTGCTQATWVYDLRSNMPNF 389

Query: 438 GKK 440
           GK+
Sbjct: 390 GKR 392


>gi|283797241|ref|ZP_06346394.1| type I restriction-modification system DNA methylase [Clostridium
           sp. M62/1]
 gi|291075091|gb|EFE12455.1| type I restriction-modification system DNA methylase [Clostridium
           sp. M62/1]
          Length = 214

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 14/142 (9%)

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            + + L+   +  + F   +SNPP+  KWE D + V          RF P   L   S  
Sbjct: 73  HEDTLLNPQHWDDEPFEVIVSNPPYSIKWEGDDNPVLINDP-----RFSPAGVLAPKSKA 127

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP
Sbjct: 128 DLAFIMHSLAWLAT----NGTAAIVCFPGIMYRGGA---EKKIRQYLIDNNFIDCIIQLP 180

Query: 395 TDLFFRTNIATYLWILSNRKTE 416
           ++LFF T+IAT + +L   K +
Sbjct: 181 SNLFFGTSIATCIMVLKRNKAD 202


>gi|325990089|ref|YP_004249788.1| type I restriction-modification system, modification subunit
           [Mycoplasma suis KI3806]
 gi|323575174|emb|CBZ40836.1| Type I restriction-modification system, modification subunit
           [Mycoplasma suis]
          Length = 613

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 48/312 (15%)

Query: 135 KICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           KI K    I  H D T  D  + +IYE+ + +F S V      F TP  +V++    +L+
Sbjct: 141 KILKGLLEIFDHEDITWEDDKLGSIYEYFLEQFASYVKGEEGIFFTPPSLVNMIVN-ILE 199

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEP 249
           P             T+ DP CG+GG           H  +C  H      +   G E   
Sbjct: 200 PTQG----------TVLDPACGSGGMFIAIKQYMDKHNLNCNEH------ITFWGHEKVE 243

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
               +C+  + I  L S     ++      S  +       +  Y L+NPPF      + 
Sbjct: 244 HNARLCLMNIFIHHLGSGK---IAGGDDANSYYNDHWGLNGKCDYVLANPPF------NI 294

Query: 310 DAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             V  E      GR   GLP++S     + + L++ +  + L    N  G+A  V+ S  
Sbjct: 295 VGVNAEAAEAA-GRLPFGLPQVSKLEIKNSNFLWISYFYSYL----NSTGKAGFVMPSIT 349

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA--TYLWILSNRKTEERRGKV 422
           +    +G+ + EIR  ++E   I+ ++ +    FF++       LW  + +K +E   KV
Sbjct: 350 M----SGTVDKEIRSKVVETKHIDLLINVAPK-FFKSKFKGDCCLWFFNKQKPKEYENKV 404

Query: 423 QLINATDLWTSI 434
             I+A++ +  +
Sbjct: 405 LFIDASNYYVPV 416


>gi|320088960|emb|CBY98716.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 529

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 106/265 (40%), Gaps = 55/265 (20%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           T GFL +A  +V                 +I    V  G EL P T  + +   L+  +E
Sbjct: 178 TAGFLIEADRYVKSQTHDLDDLDGDAQDFQIKKAFV--GLELVPGTRRLALMNCLLHDIE 235

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +   D    I+ G+TL  D     +     +NPPFG                      G
Sbjct: 236 GN--LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA-------------------AG 274

Query: 326 PGLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             + +      S+  + F+ H+   L      GGRAA+V+  + LF G  G   ++IRR 
Sbjct: 275 TNITRTFVHPTSNKQLCFMQHIIETLR----PGGRAAVVVPDNVLFEGGKG---TDIRRD 327

Query: 381 LLENDLIEAIVALPTDLFFRTNIAT 405
           L++   +  I+ LPT +F+   + T
Sbjct: 328 LMDKCHLHTILRLPTGIFYAQGVKT 352


>gi|223983263|ref|ZP_03633456.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM
           12042]
 gi|223964756|gb|EEF69075.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM
           12042]
          Length = 500

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 48/255 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+ +  +    G   F TPR ++ +   L+          +P    T+ DP 
Sbjct: 154 IRGDVYEYLLSKIATAGRNGQ--FRTPRHIIEMMVKLV----------NPKPEDTICDPA 201

Query: 214 CGTGGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           CGT GFL +A  ++ D              H +  +   HG +++     +    M+   
Sbjct: 202 CGTAGFLVEASTYLIDTYKNDILMNKQNRDHYMNHMF--HGFDMDRTMLRIGAMNMMTHG 259

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E       S  I+   +LS       ++   L+NPPF       K  ++ E  + +L +
Sbjct: 260 VE-------SPFIEYRDSLSDQNLDQDKYSLVLANPPF-------KGTLDAESVSSDLLK 305

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L++    GGR A ++    LF   + +   +IR+ L+E
Sbjct: 306 ----VAKTKKTELLFLALFIRMLKI----GGRCACIVPDGVLFG--SSNAHVQIRKALIE 355

Query: 384 NDLIEAIVALPTDLF 398
            + +EA++++P+ +F
Sbjct: 356 ENRLEAVISMPSGVF 370


>gi|205359887|ref|ZP_02833022.2| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342263|gb|EDZ29027.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 533

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 106/264 (40%), Gaps = 55/264 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  GT
Sbjct: 133 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAGT 182

Query: 217 GGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            GFL +A  +V                 +I    V  G EL P T  + +   L+  +E 
Sbjct: 183 AGFLIEADRYVKSQTHDLDDLDGDAQDFQIKKAFV--GLELVPGTRRLALMNCLLHDIEG 240

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +   D    I+ G+TL  D     +     +NPPFG                      G 
Sbjct: 241 N--LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA-------------------AGT 279

Query: 327 GLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            + +      S+  + F+ H+   L      GGRAA+V+  + LF G  G   ++IRR L
Sbjct: 280 NITRTFVHPTSNKQLCFMQHIIETLR----PGGRAAVVVPDNVLFEGGKG---TDIRRDL 332

Query: 382 LENDLIEAIVALPTDLFFRTNIAT 405
           ++   +  I+ LPT +F+   + T
Sbjct: 333 MDKCHLHTILRLPTGIFYAQGVKT 356


>gi|258592717|emb|CBE69026.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [NC10 bacterium
           'Dutch sediment']
          Length = 503

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 45/277 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++++YE ++R       +  E F TPR V+ L    +          +P +   + DP 
Sbjct: 159 TLAHLYESMLREMRDAAGDSGE-FYTPRPVIRLIVQQV----------NPRLGERVLDPA 207

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GTGGFL ++  H    V       ++    +  G E +P  + + +  +L+  L+   R
Sbjct: 208 AGTGGFLVESYEHLKAQVKSVEDRRRLQEDTL-FGIEKKPMPYLLGMMNLLLHGLD---R 263

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +L ++    + L +   +G R+H  ++NPPFG + EK           G    F P   
Sbjct: 264 PNLLRDNALRNPLVQITDSGARYHVIMTNPPFGGEEEK-----------GVQDNF-PDAT 311

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-SEIRRWLLENDLIE 388
           + S+ ++LFL  +   L+     GGR  +V+ +  LF    G G  + +++ LLE+  + 
Sbjct: 312 RTSETALLFLQFIMRSLK----RGGRCGMVVPNGTLF----GDGVCARVKKELLEHFNLH 363

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
            IV LP  +F     A Y  I +N    +R G  + I
Sbjct: 364 TIVRLPNGVF-----APYTSIPTNLLFFDRSGPTKEI 395


>gi|75766307|pdb|2AR0|A Chain A, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
 gi|75766308|pdb|2AR0|B Chain B, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
          Length = 541

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 103/264 (39%), Gaps = 51/264 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE L+++  +E   GA  + TPR ++     LL           P     + DP  
Sbjct: 129 FGDXYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAA 178

Query: 215 GTGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL +A  +V           G            G EL P T  + +   L+  +E 
Sbjct: 179 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALXNCLLHDIEG 238

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +   D    I+ G+TL  D     + H   +NPPFG                      G 
Sbjct: 239 N--LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-------------------AGT 277

Query: 327 GLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            + +      S+  + F  H+   L    + GGRAA+V+  + LF G  G   ++IRR L
Sbjct: 278 NITRTFVHPTSNKQLCFXQHIIETL----HPGGRAAVVVPDNVLFEGGKG---TDIRRDL 330

Query: 382 LENDLIEAIVALPTDLFFRTNIAT 405
            +   +  I+ LPT +F+   + T
Sbjct: 331 XDKCHLHTILRLPTGIFYAQGVKT 354


>gi|332524592|ref|ZP_08400795.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2]
 gi|332107904|gb|EGJ09128.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2]
          Length = 613

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 61/273 (22%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI---- 143
           L +LGS   + +    IA+             F     R+    LL  I    +GI    
Sbjct: 134 LRSLGSRGAKGSQREVIANV------------FKGVQNRMVSGYLLRDILNKINGIHFSA 181

Query: 144 --ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             E+H        +S++YE ++R       +  E F TPR VV      +          
Sbjct: 182 SEEIH-------TLSHLYESMLREMRDAAGDSGE-FYTPRPVVRFMVQAM---------- 223

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAG 258
            P +  T+ DP CGTGGFL +A +H+A    +      L      GQE +P  + +    
Sbjct: 224 DPQLGETVLDPACGTGGFLVEAFHHMAGQVKNPDQRRTLQRSSLFGQEAKPLPYMLAQMN 283

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           +L+  LE       +  I  G+TL +   ++   +R    L+NPPFG            E
Sbjct: 284 LLLHGLE-------APQIAYGNTLERRINEIGHSERVDVILTNPPFG-----------GE 325

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            + G    F P + + ++ ++LFL ++  KL +
Sbjct: 326 EEAGIKNNFPPNM-QTAETALLFLQYIMRKLRV 357


>gi|210134633|ref|YP_002301072.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210132601|gb|ACJ07592.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 543

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 34/291 (11%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ +     E   ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLIKDYNKAGGETYAEYYTPLSIASIIAKLLIN--------EPTQSVKIYDPSTGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTTS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CHGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LF  H  N L    +  G+ AI++ +   F       E++I R L++  L+  +V +
Sbjct: 350 IYTLFFQHCLNML----SNKGKGAIIVPTG--FISTKSGVENKIVRHLVDGRLVYGVVCM 403

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK  +
Sbjct: 404 PSQVF--ANTGTNVSIIFFQKTPSAK-EVVLIDASKLGEEYTENKNKKTHL 451


>gi|164687376|ref|ZP_02211404.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM
           16795]
 gi|164603800|gb|EDQ97265.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM
           16795]
          Length = 486

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 134/308 (43%), Gaps = 47/308 (15%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   + ++ +  +     I ++  A +L KI      +E+      D    +
Sbjct: 89  NEVFPFIKNLHGDGESAYSKY-MGDAIFKIPTALMLAKIIDGIDKLEIDN---KDDNKGD 144

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  + G   F TPR ++ +  +L+           P    T+ DP  G+ 
Sbjct: 145 LYEYLLSKVATAGTNGQ--FRTPRHIIDMIVSLM----------KPTPQDTIVDPAAGSA 192

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +   +   L  H       G +++     +    M++  +++    
Sbjct: 193 GFLVSSQQYLRDNHADLFLVQSLKEHFNNDMFYGFDMDRTMLRIGAMNMMLHGVDN---- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               NI+   +LS+     +++   L+NPPF  K   D +AV            G  L K
Sbjct: 249 ---PNIEYKDSLSEVNTDSEKYSLVLANPPF--KGSLDYEAV------------GADLLK 291

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           ++      L+ LA  L +   GG R A ++    LF   +  G  +IR+ ++EN+ +EAI
Sbjct: 292 VTKTKKTELLFLALFLRILKKGG-RCASIVPDGVLFG--STKGHKDIRKEIVENNKLEAI 348

Query: 391 VALPTDLF 398
           +++P+ +F
Sbjct: 349 ISMPSGVF 356


>gi|298483407|ref|ZP_07001584.1| type I restriction-modification system, M subunit [Bacteroides sp.
           D22]
 gi|299148888|ref|ZP_07041950.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_23]
 gi|298270355|gb|EFI11939.1| type I restriction-modification system, M subunit [Bacteroides sp.
           D22]
 gi|298513649|gb|EFI37536.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_23]
          Length = 476

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 125/315 (39%), Gaps = 63/315 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++     +            P +  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRSLISAMVDV----------TRPQIGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++            L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDYMKKQSQDKGKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP 238

Query: 271 DLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRF 324
            + ++     +L K  D+      +  L+NPPFG +     D        E KN +L   
Sbjct: 239 IICQD-----SLEKEPDILV----NVILANPPFGTRPSGSVDINRSDFYVETKNNQLN-- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                        FL H+   L+     GGRAA+VL  + LF G  G+GE  IR+ LL  
Sbjct: 288 -------------FLQHIMLSLKT----GGRAAVVLPDNVLFEG--GAGEV-IRKKLLSE 327

Query: 385 DLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +  I+ LPT +F+   + A  L+     +T+            D+W        K  +
Sbjct: 328 FNLHTILRLPTGIFYAQGVKANVLFFTKGSRTK------------DIWFYDYRTDVKHTL 375

Query: 444 INDDQRRQILDIYVS 458
             +  +R  LD +VS
Sbjct: 376 ATNPMQRHHLDDFVS 390


>gi|307325247|ref|ZP_07604450.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
 gi|306889051|gb|EFN20034.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
          Length = 573

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 105/256 (41%), Gaps = 43/256 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L+ R  +  +    + MT   +  +  A     DDA    S   I T+YDP CG G
Sbjct: 127 LYADLVERCIASTTRSGGEPMTTLALERIVAAFTGSADDA-AGASDRTIGTVYDPACGIG 185

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+      G+H         +GQEL P T A+        R   D R   +  + 
Sbjct: 186 TLLLTAVP-----GAHR--------YGQELNPATAAIAEF-----RARLDGR---TATLA 224

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            G +L KD F   R    + +PP G   W +D   ++         R+  G+P  S+  +
Sbjct: 225 CGDSLRKDAFPDLRADLVVCDPPVGVPDWGRDDLLLDP--------RWELGVPPRSESEL 276

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLF--NGRAGSGESEIRRWLLENDLIEAIVALP 394
            ++ H           GGRA +VL SS  +   GR       IR  L+   L+ ++VALP
Sbjct: 277 AWVQHCYAHTAP----GGRALLVLPSSVAYRKTGR------RIRAELVRRGLLASVVALP 326

Query: 395 TDLFFRTNIATYLWIL 410
             L    +   +LWIL
Sbjct: 327 PGLMSSHSQPVHLWIL 342


>gi|208434384|ref|YP_002266050.1| type I restriction enzyme M protein [Helicobacter pylori G27]
 gi|208432313|gb|ACI27184.1| type I restriction enzyme M protein [Helicobacter pylori G27]
          Length = 537

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL+D         P     +YDP+ GTG
Sbjct: 184 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLID--------EPTQNVKIYDPSAGTG 235

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 236 TLLM-ALAHQIGTNS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 287

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 288 TNPYHSKE--CHGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 343

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  +V 
Sbjct: 344 IYTLFFQHCLNML----SNKGKGAIIVPTGFI---SAKSGVENKIVRHLVDERLVYGVVC 396

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+   D
Sbjct: 397 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVVLIDASKLGEEYTENKNKKTRLRTSD 449


>gi|86141513|ref|ZP_01060059.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Leeuwenhoekiella
           blandensis MED217]
 gi|85832072|gb|EAQ50527.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Leeuwenhoekiella
           blandensis MED217]
          Length = 516

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 64/319 (20%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           TN+ + +  +I S   + K++F  +   ++   + KA  L ++ +    +++    +   
Sbjct: 88  TNSVDGIFPFIRSLG-SEKSLFSTYMKDASFG-INKAATLDQVMEKLERLDMSNQDIK-- 143

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              +IYE+L+ +   E    A  F TPR ++ L   ++           P +  T+ DP+
Sbjct: 144 --GDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVEMM----------QPKLEDTICDPS 189

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQELEPETHAVCVAGMLIRRL 264
            GT GFL  A  ++     H+ I  +          + +G E +     +    + +  +
Sbjct: 190 AGTAGFLVAAKEYI---DKHYDITELDRNKEHINKHMFNGTEFDATMLRIASMNLFLHGV 246

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E         NI     +SKD      +   L+NPPF       K  ++KE         
Sbjct: 247 E-------EPNIVDVDAVSKDNEVSDAYTLVLANPPF-------KGTIDKE-------SI 285

Query: 325 GPGLPKISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES--EIRR 379
            PGL  ++  +   +LFL  +  +L+     GGRAA ++    LF    GSG++   IR 
Sbjct: 286 APGLSNVTKTTKTELLFLALMLRQLK----KGGRAAAIVPDGVLF----GSGKAFKSIRS 337

Query: 380 WLLENDLIEAIVALPTDLF 398
            ++ N  +EA+++LP+ +F
Sbjct: 338 EIVNNHKLEAVISLPSGVF 356


>gi|332975816|gb|EGK12695.1| type I restriction-modification system DNA-methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 491

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 50/262 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE L+R   S  + G  +F TPR V    T  ++D  D      P +   + DP
Sbjct: 142 HLFGDIYEQLLRDLQSAGNAG--EFYTPRAV----TRFIVDRVD------PKLGERIMDP 189

Query: 213 TCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFL  + +HV     +    H+I    +  G E +   H +C   M++  +E   
Sbjct: 190 ACGTGGFLACSFDHVKNNYVETAEDHQILQKQI-LGVEKKQLPHLLCTTNMMLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +        ++NPPFG   E     +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDSDIDVIVTNPPFGGTEEH---GIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             +  + + LFL  +   L       GRAA+VL    LF    G G ++++++ L E   
Sbjct: 291 EFQTRETADLFLQLIIEVLA----EKGRAAVVLPDGTLF----GEGVKTKLKKMLTEECN 342

Query: 387 IEAIVALPTDLF-----FRTNI 403
           +  IV LP  +F      +TNI
Sbjct: 343 LHTIVRLPNGVFNPYTGIKTNI 364


>gi|291527177|emb|CBK92763.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 486

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 49/284 (17%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I ++  A +L KI      +EL  +        ++YE+L+ +  +  + G   F TPR 
Sbjct: 114 AIFKIPTAAMLSKIVDGIDKLELGDEDSK----GDLYEYLLSKVATAGTNGQ--FRTPRH 167

Query: 183 VVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           ++ +   L+   PDD           T+ DP  G+ GFL +A +++ +      +    +
Sbjct: 168 IIKMMVELVKPAPDD-----------TIIDPAMGSAGFLIEAQSYLRENHPELFLHQESL 216

Query: 242 PH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            H       G +++     +    ML+  +E+        NI    +LS+     +++  
Sbjct: 217 QHFNNTMFYGNDMDRTMLRIGAMNMLLHGVEN-------PNISYRDSLSEQNTDVEKYSL 269

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF       K +++ E  + +L +    + K     +LFL      L+     GG
Sbjct: 270 VLANPPF-------KGSLDYEAVSADLLK----VTKTKKTELLFLALFLRILK----KGG 314

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           RAA+++    LF   +     +IR+ ++EN+ ++A++++P+ +F
Sbjct: 315 RAAVIVPDGVLFG--SSKAHKQIRKEIIENNKLDAVISMPSGVF 356


>gi|149200913|ref|ZP_01877888.1| type I restriction-modification system DNA methylase [Roseovarius
           sp. TM1035]
 gi|149145246|gb|EDM33272.1| type I restriction-modification system DNA methylase [Roseovarius
           sp. TM1035]
          Length = 700

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 43/291 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE+ +  F  + +    +F TP  +V     ++ +PD  +          ++DP 
Sbjct: 156 VFGRIYEYFLAEFSKQGAHDNGEFFTPPSIVQTIVNVI-EPDHGI----------VFDPA 204

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    + + + D G        +  +G E    T  +    + +  L+   R    
Sbjct: 205 CGSGGMFVQSSHFIEDAG--QDTMKRVTFYGHEKNETTAKLAQINLAVHGLQGTIRAG-- 260

Query: 274 KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-- 329
                  T  KD     GK   + ++NPPF    E D D V+ +       R   GLP  
Sbjct: 261 ---NDAITYYKDPHELVGK-CDFVMANPPFNVD-EVDADKVKGDK------RLPFGLPGV 309

Query: 330 ----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               K+S+ + L++ +  + L    N  GRA +V+SS       AG  E+ +R+ L+E  
Sbjct: 310 NKAKKVSNANYLWMSYFYSYL----NENGRAGVVMSSQA---SSAGRDEAVVRQKLIETG 362

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTE--ERRGKVQLINATDLWTSI 434
            ++ ++ +  + F+   +   LW     K    ER   V +++A + +  +
Sbjct: 363 AVDVMIDIRGNFFYTRTVPCQLWFFDRAKERDPERADHVLMLDARNNYRKV 413


>gi|254976626|ref|ZP_05273098.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-66c26]
 gi|255094011|ref|ZP_05323489.1| type I restriction modification system M subunit [Clostridium
           difficile CIP 107932]
 gi|255315762|ref|ZP_05357345.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-76w55]
 gi|255518423|ref|ZP_05386099.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-97b34]
 gi|255651541|ref|ZP_05398443.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-37x79]
 gi|260684596|ref|YP_003215881.1| type i restriction enzyme m subunit [Clostridium difficile CD196]
 gi|260688254|ref|YP_003219388.1| type i restriction enzyme m subunit [Clostridium difficile R20291]
 gi|306521356|ref|ZP_07407703.1| type I restriction enzyme M protein [Clostridium difficile
           QCD-32g58]
 gi|260210759|emb|CBA65674.1| type i restriction enzyme m subunit [Clostridium difficile CD196]
 gi|260214271|emb|CBE06583.1| type i restriction enzyme m subunit [Clostridium difficile R20291]
          Length = 487

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 135/310 (43%), Gaps = 47/310 (15%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +N +  +I     N ++ +  +     I ++    +L KI    S +EL  D       
Sbjct: 88  VQNEVFPFIKKLHGNKESAYAKY-MGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  +  + G   F TPR ++ +   L+        K +P  I  + DP  G
Sbjct: 144 GDLYEYLLSKVATAGTNGQ--FRTPRHIIDMIVRLI--------KPTPEDI--IVDPAAG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  +  ++ D  S   +   L  H       G +++     +    M++  +++  
Sbjct: 192 SAGFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVDN-- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 NI+   +LS+      +F   L+NPPF       K +++ E  + +L +    +
Sbjct: 250 -----PNIEYKDSLSEVNTDKDKFTLVLANPPF-------KGSLDYEAVSADLLK----V 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L++    GGR A ++    LF G  G G   IR+ +++N  +E
Sbjct: 294 TKTKKTELLFLALFLRVLKI----GGRCACIVPDGVLF-GSTG-GHKSIRKEIVDNHKLE 347

Query: 389 AIVALPTDLF 398
           AI+++P+ +F
Sbjct: 348 AIISMPSGVF 357


>gi|300933508|ref|ZP_07148764.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 315

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 16/165 (9%)

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           LS +I+Q ++  +D  +    F Y ++NPPF      + D ++K+   G+  R   GLPK
Sbjct: 44  LSGDIRQANSYYEDPHSAVGAFDYVMANPPF------NVDKIKKDQLAGD-KRLPFGLPK 96

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             +G+ L++      L   P G  RA  V+++S    G AG  E EIR+ L+E+  ++ +
Sbjct: 97  ADNGNFLWIQQFYAALS--PEG--RAGFVMANSA---GDAGYSEKEIRKQLIESGTVDVM 149

Query: 391 VALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSI 434
           VA+  + F+   +   LW L   K    R   V  I+A  ++  I
Sbjct: 150 VAISPNFFYTVTLPVTLWFLDKAKVGTPREDTVLFIDARHIFRQI 194


>gi|182626301|ref|ZP_02954057.1| type I restriction enzyme M subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177908399|gb|EDT70941.1| type I restriction enzyme M subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 487

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 136/310 (43%), Gaps = 47/310 (15%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +N +  +I +   N ++ +  +     I ++    +L KI    +GIE   +   +   
Sbjct: 88  VQNKVFPFIKNLHGNKESAYAKY-MEDAIFKIPTPLMLSKIVDGINGIEFKKE---NDTK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  S  + G   F TPR ++ +   L+        K +P  I  + DP  G
Sbjct: 144 GDLYEYLLSKLSSAGTNGQ--FRTPRHIIDMIVKLM--------KPTPEDI--IVDPAAG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  +  ++ D  +       L  H       G +++     +    M++  +++  
Sbjct: 192 SAGFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVDN-- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 NI+   +LS+     ++F   L+NPPF       K +++ E  + +L +    +
Sbjct: 250 -----PNIEYKDSLSEVNTDKEKFTLVLANPPF-------KGSLDYEAVSADLLK----V 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGR A ++    LF   +  G  +IR+ ++EN  +E
Sbjct: 294 TKTKKTELLFLALFLRILKT----GGRCASIVPDGVLFG--STKGHKDIRKEIVENHKLE 347

Query: 389 AIVALPTDLF 398
           AI+++P+ +F
Sbjct: 348 AIISMPSGVF 357


>gi|308182610|ref|YP_003926737.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4]
 gi|308064795|gb|ADO06687.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4]
          Length = 543

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 128/292 (43%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ + +       ++ TP  +  +   LL+          P     +YDP+ GTG
Sbjct: 190 IFEYLIKDYNNAGGGKYAEYYTPLSIASIIAKLLV--------SEPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+ F GK   + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE-FKGK-MDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AIV+ +  +    A SG E++I R L++  L+  +V 
Sbjct: 350 IYTLFFQHCLNML----SDKGKGAIVVPTGFI---SAKSGIENKIVRHLVDEKLVYGVVC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVILIDASKLGEEYTENKNKKTRL 451


>gi|166368339|ref|YP_001660612.1| Type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
 gi|166090712|dbj|BAG05420.1| Type I restriction enzyme EcoEI M protein homolog [Microcystis
           aeruginosa NIES-843]
          Length = 677

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 97/247 (39%), Gaps = 37/247 (14%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V LA  ++           P     + DP CG+GGFL  A+NHV        
Sbjct: 163 EFFTPHPIVRLAVEMI----------DPKPNEKIIDPACGSGGFLIQAINHVRQNNPEFD 212

Query: 236 IPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           I   +     G E  P+   V ++GM+    E          I   + L +D      F 
Sbjct: 213 IASFVQESITGIEFNPD---VALSGMIRLVFEGGT----GSEIICTNALIEDEKLNNSFD 265

Query: 294 YCLSNPPFGKKWEKDKDAVEKE-------HKNGELG-RFGPGLPKISDGSMLFLMHLANK 345
             L+NPPFG K + +   + K        HK+   G    P +       +LF+      
Sbjct: 266 VILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNGWEVSPTVLAGQSPDILFIEKSIKL 325

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403
           L      GGR AI+L    L N   G     IR WL     I  +V++P + F  + T I
Sbjct: 326 LR----AGGRMAIILPDGLLQNISNGP----IRHWLRSQTKILGVVSIPPEAFVPYGTGI 377

Query: 404 ATYLWIL 410
            T L ++
Sbjct: 378 KTSLLVV 384


>gi|121594953|ref|YP_986849.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607033|gb|ABM42773.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 492

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 141/329 (42%), Gaps = 67/329 (20%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           S + + N   Y+       + +FED         ++   LL ++    + I+ +      
Sbjct: 95  SADPQRNPRGYVV------RGVFED-----AYNYMKSGHLLRQVVNKLNAIDFNRQAERH 143

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           +  +++YE ++R   S  + G  +F TPR V    T  ++D        +P +  ++ DP
Sbjct: 144 Q-FNDLYEKILRDLQSAGNAG--EFYTPRAV----TQFMVD------MTNPQLGESVMDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRR 270
             GTGGFL  A+ H+     + +   +L     G E +   H +CV  +L+  +E     
Sbjct: 191 ATGTGGFLVCAIEHLRKQVHNAEQEAVLQNSIRGVEKKQLPHMLCVTNLLLHGIE----- 245

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I   +TL+   +D     R +  L+NPPFG   E   +A               G
Sbjct: 246 -VPSQIVHDNTLARPLRDYTAADRVNVILTNPPFGGIEEPGIEA---------------G 289

Query: 328 LP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLE 383
            P   +  + + LFL+ + + L+     GGRAA+VL    LF    G G ++ I+  LL+
Sbjct: 290 FPADVRTKETADLFLVLIQHLLK----PGGRAAVVLPDGFLF----GEGVKARIKEQLLQ 341

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSN 412
           +  +  IV LP  +F     A Y  I +N
Sbjct: 342 HCNLHTIVRLPGGVF-----APYTGIKTN 365


>gi|167644296|ref|YP_001681959.1| N-6 DNA methylase [Caulobacter sp. K31]
 gi|167346726|gb|ABZ69461.1| N-6 DNA methylase [Caulobacter sp. K31]
          Length = 657

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 154/377 (40%), Gaps = 72/377 (19%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138
           F+ ++       G    +  ++    +  ++  AIF+  D    +  L+   L Y + + 
Sbjct: 226 FFASANERTGINGPLKVKKRIDGLFDAVKEDYPAIFQAND----VVALKPPVLAYIVSQL 281

Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             +S +E   D     V  + YE ++   GS +     +F TPR++ ++A ++L DP + 
Sbjct: 282 QMYSLLESDVD-----VKGHAYEEIV---GSNLRGDRGEFFTPRNICNMAVSML-DPSEG 332

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQEL 247
                    +T+ DP CGTGGFL  AMNHV +           G + +  P +     + 
Sbjct: 333 ---------QTILDPACGTGGFLISAMNHVIEKIRVAELEKWKGDYGRADPKIAARISKF 383

Query: 248 EPETHAVCVAGM-----LIR--RLESDPRRDLSKNIQQGSTLS---------KDLFTGKR 291
                  C+ G+     L++  ++      D +  + Q ++L          +D      
Sbjct: 384 A----GACIVGLDFNPELVKATKMNMVMNNDGAGGLYQANSLESPATWEEALRDRKLIGS 439

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPGLPKISDGSMLFLMHL 342
                +NPPFG K   D  A+ +++  G    +            + K     +LF+   
Sbjct: 440 VDLIFTNPPFGSKIPVDDPAILEKYDLGHSWSYNEEIDSWTMNESIQKSQPPEILFIERC 499

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+    G GR A+VL    L  G  G G   +R W+L+N  + A + L  D  F+ N
Sbjct: 500 VKFLK---PGTGRVAMVLPDGIL--GSPGLG--YVREWILKNTWVLASIDLHPDT-FQPN 551

Query: 403 IATYLWILS-NRKTEER 418
           ++    +L   RKT+E+
Sbjct: 552 VSVQTSVLVLQRKTDEQ 568


>gi|332292347|ref|YP_004430956.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170433|gb|AEE19688.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 552

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 164/410 (40%), Gaps = 88/410 (21%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDR- 153
           RNN+  +I   +D   + F  +   + +  ++K  LL +  K    I  E+  D    + 
Sbjct: 126 RNNVFPHIKDLNDETSS-FTKY-MKNAVFIIQKPSLLVEAVKKVDEIFIEIEEDAKDGKQ 183

Query: 154 ----VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               +  ++YE L++   +    G   F TPR ++ L   L            P +   +
Sbjct: 184 SFQDIQGDVYEMLLKEIATAGKNGQ--FRTPRHLIKLLAELT----------EPKLGHKI 231

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP--------------------------H 243
            DP CGT GFL  A N++       K P +L                            +
Sbjct: 232 ADPACGTSGFLLGAYNYILSDLVRKKEPELLQIDEDGFERATISSVLTEENKQILNDSFY 291

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G +++     + +  +++  +++        +I+   TLSK+      +   L+NPPF  
Sbjct: 292 GFDIDTTMVRLGLMNLMMHGIDN-------PHIEYKDTLSKNYNESGNYDIVLANPPFTG 344

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLS 361
           K +K              G   P L  I  GS  +LFL  ++  L      GG+AA+++ 
Sbjct: 345 KLDK--------------GDVNPDL-GIDTGSTELLFLARISKML----RAGGKAAVIIP 385

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420
              LF   A   +   R  LL ++ +EA+++LP   F   T + T + + +  K EE   
Sbjct: 386 EGVLFG--ASKAQKATREILLRDNQLEAVISLPAGAFKPYTGVKTAILVFT--KVEEDSK 441

Query: 421 KVQLINATDLWTSI-RNEG----KKRRIINDDQRRQILDIYVSRENGKFS 465
           K    +   +W  +  N+G      RR + ++    +   Y++R++ +++
Sbjct: 442 K---WHTDKVWFYVLENDGYSLDDNRRKLKENPLPLVKSNYIARKSAEYT 488


>gi|168232880|ref|ZP_02657938.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471895|ref|ZP_03077879.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458259|gb|EDX47098.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332905|gb|EDZ19669.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 529

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     +     +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L      GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETLR----PGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|238924766|ref|YP_002938282.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Eubacterium rectale ATCC
           33656]
 gi|238876441|gb|ACR76148.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Eubacterium rectale ATCC
           33656]
          Length = 486

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 129/283 (45%), Gaps = 47/283 (16%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I ++  A +L KI      +EL  +        ++YE+L+ +  +  + G   F TPR 
Sbjct: 114 AIFKIPTAAMLSKIVDGIDKLELGDEDSK----GDLYEYLLSKVATAGTNGQ--FRTPRH 167

Query: 183 VVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           ++ +   L+   PDD           T+ DP  G+ GFL +A +++ +   +H   P L 
Sbjct: 168 IIKMMVELVKPAPDD-----------TIIDPAMGSAGFLIEAQSYLRE---NH---PELF 210

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDL------SKNIQQGSTLSKDLFTGKRFHYC 295
            H + LE   + +     + R +      ++      + NI    +LS+     +++   
Sbjct: 211 LHQESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHGVENPNISYRDSLSEQNTDVEKYSLV 270

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF       K +++ E  + +L +    + K     +LFL      L+     GGR
Sbjct: 271 LANPPF-------KGSLDYEAVSADLLK----VTKTKKTELLFLALFLRILK----KGGR 315

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           AA+++    LF   +     +IR+ ++EN+ ++A++++P+ +F
Sbjct: 316 AAVIVPDGVLFG--SSKAHKQIRKEIIENNKLDAVISMPSGVF 356


>gi|325678123|ref|ZP_08157755.1| putative type I restriction-modification system, M subunit
           [Ruminococcus albus 8]
 gi|324110179|gb|EGC04363.1| putative type I restriction-modification system, M subunit
           [Ruminococcus albus 8]
          Length = 542

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 46/316 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ + +       ++ TP  +  +   LL+  D  L           YDP+ GTG
Sbjct: 184 IFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDDADLHNIE------CYDPSAGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H    G             Q++   ++ +    +++  L S     +     
Sbjct: 238 TLLM-ALGH--QIGEDR-----CTIFAQDISQRSNKMLKLNLILNGLVSSLDHAI----- 284

Query: 278 QGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           QG TL      S D  + + F Y +SNPPF   +   ++ +          RF  G+PK+
Sbjct: 285 QGDTLVAPYHKSDDGQSLRTFDYVVSNPPFKMDFSDTREKIA-----AMPARFWAGVPKV 339

Query: 332 ---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                 SM     F+ H+ N L+      G+ AIV+ +   F     S E  + + L+E+
Sbjct: 340 PAKKKESMAIYTCFIQHVVNSLK----KTGKGAIVVPTG--FLTAKSSVEGAVLKKLVED 393

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++   V++P+++F  T     +    N +T +R   V LI+A+ L    ++   ++R +
Sbjct: 394 HIVYGAVSMPSNVFANTGTNVSVLFFDNSRTADR---VVLIDASKLGEEYKDGNLQKRRL 450

Query: 445 NDDQRRQILDIYVSRE 460
             ++  +I+  + ++E
Sbjct: 451 RPEEIEKIITTFRNKE 466


>gi|293369116|ref|ZP_06615710.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
 gi|292635699|gb|EFF54197.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
          Length = 384

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 111/274 (40%), Gaps = 51/274 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++     +            P +  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRSLISAMVDV----------TRPQIGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++            L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDYMKKQSQDKGKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP 238

Query: 271 DLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRF 324
            + ++     +L K  D+      +  L+NPPFG +     D        E KN +L   
Sbjct: 239 IICQD-----SLEKEPDILV----NVILANPPFGTRPSGSVDINRSDFYVETKNNQLN-- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                        FL H+   L+     GGRAA+VL  + LF G AG     IR+ LL  
Sbjct: 288 -------------FLQHIMLSLKT----GGRAAVVLPDNVLFEGGAG---EVIRKKLLSE 327

Query: 385 DLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEE 417
             +  I+ LPT +F+   + A  L+     +T++
Sbjct: 328 FNLHTILRLPTGIFYAQGVKANVLFFTKGSRTKD 361


>gi|257451972|ref|ZP_05617271.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|317058521|ref|ZP_07923006.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|313684197|gb|EFS21032.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
          Length = 256

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 15/146 (10%)

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL   L   ++ F   +SN P+  KW  D D       N E  RF P   L   S
Sbjct: 43  IKRGDTLLNPLHNEEKPFDAIVSNRPYSIKWVGDADPT---LINDE--RFAPAGKLAPKS 97

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  + L    +  GRAAIV      +  R G+ E  IR++L++N+ ++ ++ 
Sbjct: 98  YADYAFIMHSLSYL----SSKGRAAIVCFPGIFY--RKGA-ERTIRKYLVDNNFVDCVIQ 150

Query: 393 LPTDLFFRTNIATYLWILSNRKTEER 418
           LP +LFF T+IAT + +++  KTE R
Sbjct: 151 LPDNLFFGTSIATCILVMAKNKTENR 176


>gi|332663456|ref|YP_004446244.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332270|gb|AEE49371.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 487

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 56/279 (20%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           LL ++ +  S I++      DR    ++YE+L+ +  S    G   F TPR ++ L   +
Sbjct: 124 LLAQVVEMLSNIDMS-----DRDTKGDVYEYLLSKIASAGQNG--QFRTPRHIIRLMVDM 176

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPILV 241
           +           P +   + DP+ GT GFLT A  ++         AD    H    + +
Sbjct: 177 V----------QPTLEDFICDPSAGTCGFLTGAGEYIREHYANELYADGAQEHFQNHMFM 226

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G E +P    +    +++  +E+   RD+    +  +  +      +R    L+NPPF
Sbjct: 227 --GMEFDPTMIRIGAMNLILHGIENPQLRDVDALSEANTDFT------ERATLVLANPPF 278

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIV 359
             K   D++AV+           G  L  +      +LFL  +   L+L    GGRAA++
Sbjct: 279 --KGSLDREAVD-----------GKILQTVDSKKTELLFLALILKGLKL----GGRAAVI 321

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    LF   +     +IR  L+E   ++A++++P+ +F
Sbjct: 322 VPDGVLFG--SSKAHQQIRTELIERQRLQAVISMPSGVF 358


>gi|255102190|ref|ZP_05331167.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-63q42]
          Length = 487

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 134/310 (43%), Gaps = 47/310 (15%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +N +  +I     N  + +  +     I ++    +L KI    S +EL  D       
Sbjct: 88  VQNEVFPFIKKLHGNKDSAYAKY-MGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  +  + G   F TPR ++ +   L+        K +P  I  + DP  G
Sbjct: 144 GDLYEYLLSKVATAGTNGQ--FRTPRHIIDMIVRLI--------KPTPEDI--IVDPAAG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  +  ++ D  S   +   L  H       G +++     +    M++  +++  
Sbjct: 192 SAGFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVDN-- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 NI+   +LS+      +F   L+NPPF       K +++ E  + +L +    +
Sbjct: 250 -----PNIEYKDSLSEVNTDKDKFTLVLANPPF-------KGSLDYEAVSADLLK----V 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L++    GGR A ++    LF G  G G   IR+ +++N  +E
Sbjct: 294 TKTKKTELLFLALFLRVLKI----GGRCACIVPDGVLF-GSTG-GHKSIRKEIVDNHKLE 347

Query: 389 AIVALPTDLF 398
           AI+++P+ +F
Sbjct: 348 AIISMPSGVF 357


>gi|166711006|ref|ZP_02242213.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 514

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 54/303 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIHCIKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDELYGPDVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +     +  I+ G++L          +  LSNPPFG                   G  
Sbjct: 237 HGEG----AGPIRLGNSLGTAGRDLPPANIILSNPPFGTAK----------------GGG 276

Query: 325 GPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           GP       K S+  + FL H+   L      GGRAA+VL  + LF   AG G +EIRR 
Sbjct: 277 GPTRDDLTYKTSNKQLAFLQHIYRGL----TPGGRAAVVLPDNVLF--EAGLG-TEIRRD 329

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE 437
           L++   +  ++ LPT +F+   + T +           R       AT   DL +++ + 
Sbjct: 330 LMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAANPRQDTGCTQATWVYDLRSNMPSF 389

Query: 438 GKK 440
           GK+
Sbjct: 390 GKR 392


>gi|161617830|ref|YP_001591795.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367194|gb|ABX70962.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 529

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 51/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     +     +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L      GGRAA+V+  + LF G  G   ++IRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETLR----PGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 330 DKCHLHTILRLPTGIFYAQGVKT 352


>gi|152997208|ref|YP_001342043.1| N-6 DNA methylase [Marinomonas sp. MWYL1]
 gi|150838132|gb|ABR72108.1| N-6 DNA methylase [Marinomonas sp. MWYL1]
          Length = 545

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 59/291 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE+L+ +  +    G   F TPR ++     ++           P    T+ DP+
Sbjct: 155 VKGDIYEYLLSKLTTAGINGQ--FRTPRHIIDAMIEII----------DPQPWDTICDPS 202

Query: 214 CGTGGFLTDAMNHVA------------DCGSHHKIPPILVPH----------GQELEPET 251
           CGT GFL   M ++             + G+ H    +L  +          G + +   
Sbjct: 203 CGTAGFLARTMEYLNRKHTSPENIWTDEEGNQHYPGDLLENYREHISDDMFWGFDFDTTM 262

Query: 252 HAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             V    M++  +       +  L+K+I++     ++ F    F   L+NPPF       
Sbjct: 263 LRVSSMNMMLHGVNGSNVLYQDTLNKSIRENFPQQEENF----FDVILANPPF------- 311

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K ++++ + N EL      + K     +LF+ H+   L+L    GGRAA+++    LF  
Sbjct: 312 KGSLDETNTNPEL----LSMVKTKKTELLFVAHILRSLKL----GGRAAVIVPDGVLFG- 362

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
            +     ++R+ L+EN+ +E I++LP+ +F     ++T + + +   T ER
Sbjct: 363 -SSKAHQQLRQELIENNQLEGIISLPSGVFKPYAGVSTAILLFTKGGTTER 412


>gi|305665032|ref|YP_003861319.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Maribacter sp. HTCC2170]
 gi|88709784|gb|EAR02016.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Maribacter sp. HTCC2170]
          Length = 707

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 135/325 (41%), Gaps = 58/325 (17%)

Query: 103 YIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV----- 154
           Y+A F   +DN K I  ++      + L+      K   N   I  + D +P R      
Sbjct: 102 YLAEFKQKADNPKTI--EYKIGEIFSELKNK---IKSGYNLREILEYADELPFRASTDKH 156

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S++YE  I+  G+    G + + TPR ++     ++           P +   +YD  
Sbjct: 157 ELSHLYESKIKNMGNAGRNGGQ-YYTPRPLIRAMINVI----------DPQIGEKIYDGA 205

Query: 214 CGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            G+ GFL +   ++ +       + K       +G+E +   + + V  M++  +E+   
Sbjct: 206 AGSCGFLCETYEYMYERMEKTTGNLKTLQEETLYGKEKKNLAYVIGVMNMILHGIEA--- 262

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                NI   +TL    +D+    R+H  L+NPPFG K  K+        +N ++     
Sbjct: 263 ----PNIIHTNTLGENVRDIQEKNRYHVILANPPFGGKERKEV------QQNFDI----- 307

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K  + + LFL H    L+     GGRAAIV+  S L N       S +R+ LL +  
Sbjct: 308 ---KTGETASLFLQHFIKSLKT----GGRAAIVIKDSFLSNNTE-KAYSTLRKNLLGSCE 359

Query: 387 IEAIVALPTDLFFRTNIATYLWILS 411
           +  I+ LP   F+   + T +   +
Sbjct: 360 LNCILDLPRGTFYGAGVKTVVLFFT 384


>gi|317012278|gb|ADU82886.1| type I restriction enzyme M protein [Helicobacter pylori
           Lithuania75]
          Length = 543

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLIN--------EPTKSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLKNAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD + GK   Y +SNPPF   +  +   + + + +  LG   P +PK     M 
Sbjct: 294 INPYHSKD-YHGK-MDYIVSNPPFKLDFSNEHAEISQNNNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+  +V 
Sbjct: 350 IYTLFFQHCLNML----SDKGKGAIIVPTGFI---SAKSGIENKIIRHLVDERLVYGVVC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKT-PSANEVILIDASKLGEEYTENKNKKTRLRTSD 455


>gi|255308059|ref|ZP_05352230.1| type I restriction modification system M subunit [Clostridium
           difficile ATCC 43255]
          Length = 487

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 134/310 (43%), Gaps = 47/310 (15%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +N +  +I     N  + +  +     I ++    +L KI    S +EL  D       
Sbjct: 88  VQNEVFPFIKKLHGNKDSAYAKY-MGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  +  + G   F TPR ++ +   L+        K +P  I  + DP  G
Sbjct: 144 GDLYEYLLSKVATAGTNGQ--FRTPRHIIDMIVRLI--------KPTPEDI--IVDPAAG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  +  ++ D  S   +   L  H       G +++     +    M++  +++  
Sbjct: 192 SAGFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVDN-- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 NI+   +LS+      +F   L+NPPF       K +++ E  + +L +    +
Sbjct: 250 -----PNIEYKDSLSEVNTDKDKFTLVLANPPF-------KGSLDYEAVSADLLK----V 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L++    GGR A ++    LF G  G G   IR+ +++N  +E
Sbjct: 294 TKTKKTELLFLALFLRVLKI----GGRCACIVPDGVLF-GSTG-GHKSIRKEIVDNHKLE 347

Query: 389 AIVALPTDLF 398
           AI+++P+ +F
Sbjct: 348 AIISMPSGVF 357


>gi|15611483|ref|NP_223134.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4154948|gb|AAD05994.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 543

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 127/291 (43%), Gaps = 34/291 (11%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNNSGGTYAEYYTPLSIASIIAKLLVN--------KPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRHAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD     +  + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKD--HKGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LF  H  N L   P G G  AI++ +    + ++G  E++I R L++  L+  ++ +
Sbjct: 350 IYTLFFQHCLNMLS--PKGKG--AIIVPTG-FISAKSGV-ENKIVRHLVDERLVYGVICM 403

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+
Sbjct: 404 PSQVF--ANTGTNVSIIFFQKTPSAK-EVILIDASKLGEEYTENKNKKTRL 451


>gi|254779131|ref|YP_003057236.1| Type I restriction enzyme M protein [Helicobacter pylori B38]
 gi|254001042|emb|CAX28986.1| Type I restriction enzyme M protein [Helicobacter pylori B38]
          Length = 543

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLIN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTTS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD + GK   Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 INPYHSKD-YKGK-MDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I + L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SHKGKGAIIVPTGFI---SAKSGIENKIVKHLVDERLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVILIDASKLGEEYTENKNKKTRLRTSD 455


>gi|163801595|ref|ZP_02195493.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174512|gb|EDP59314.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 639

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 120/281 (42%), Gaps = 54/281 (19%)

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE   F     R+    +LY +      I+L  D   D     +  ++I+  GS    G
Sbjct: 111 IFEQIPF-----RIRSNKILYLVIHKLEEIDLFEDIEVD--FDYLLLNMIKDSGSS---G 160

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  + +PR ++    + L          +P  + T+YDP  GTGGF  +A+ HV +    
Sbjct: 161 A--YYSPRPLIKAMVSAL----------NPEPLTTVYDPAMGTGGFFVEAIKHVKNKSYF 208

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           + +  I    G +L P  H + +  +L+  +      D+S      S L++D    +++ 
Sbjct: 209 NDLNFI----GNDLSPFAHLIGMLNLLLNDI------DISGVSISDSLLNRDC---QQYD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + +S  PFGK  E  K        +G L               +FL H  +KL      G
Sbjct: 256 FVISGVPFGKVNELTKYEYYYHGYSGSL-------------EAMFLKHTMDKLA----KG 298

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           GRAAIV+    LF G A S   E++R LL    +  +++LP
Sbjct: 299 GRAAIVIPDGILF-GNA-SHLDELKRQLLTQFNLHTVLSLP 337


>gi|325926905|ref|ZP_08188186.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325926912|ref|ZP_08188193.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325542721|gb|EGD14182.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325542728|gb|EGD14189.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
          Length = 514

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 120/303 (39%), Gaps = 54/303 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIHCIKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDDLYGPEVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + +     +  I+ G++LS            LSNPPFG                   G  
Sbjct: 237 DGEG----AGPIRLGNSLSNAGRELPPADIILSNPPFGTAK----------------GGG 276

Query: 325 GPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           GP       K S+  + FL H+   L+     GGRAA+VL  + LF    G   ++IRR 
Sbjct: 277 GPTRDDLTYKTSNKQLAFLQHIYRGLK----PGGRAAVVLPDNVLFEAGVG---TDIRRD 329

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE 437
           L++   +  ++ LPT +F+   + T +           R       AT   DL +++ + 
Sbjct: 330 LMDKCNLHTLLRLPTGIFYAQGVKTNVLFFQKGTAANPRQDTGCTQATWVYDLRSNMPSF 389

Query: 438 GKK 440
           GK+
Sbjct: 390 GKR 392


>gi|256962776|ref|ZP_05566947.1| N-6 DNA methylase [Enterococcus faecalis HIP11704]
 gi|256953272|gb|EEU69904.1| N-6 DNA methylase [Enterococcus faecalis HIP11704]
          Length = 438

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 48/307 (15%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G +   TP  ++ +A+ +L            G  R+  D   GTGG          D  
Sbjct: 65  KGKKQDFTPDGIIRVASGVL------------GATRSNADICAGTGGLTIKRYAENPDAQ 112

Query: 232 ------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                 S   +P +L           +AV + G  + R E      L+K+ +  S    D
Sbjct: 113 FYCEEFSDRALPFLLFNLAIR---NINAVVLHGDSLSR-EFKAIYKLTKSTEFSSIEIVD 168

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             +  +    + NPP+   W   K+ +E+E        F    PK S     FL+   ++
Sbjct: 169 EVSATKSETVIMNPPYSLPWNPLKEYLEQER----FSDFDVLAPK-SKADYAFLLQGIHQ 223

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T
Sbjct: 224 LK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPT 276

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR---IINDDQRRQILDIYVSREN- 461
            L +L   +          +N   L+    NE KK +   ++ D+   +IL+++ SR+  
Sbjct: 277 VLLVLKKNR----------LNKDILFIDASNEFKKEKAWNVLEDEHVAKILEVFQSRKAV 326

Query: 462 GKFSRML 468
            KFS ++
Sbjct: 327 DKFSSVV 333


>gi|108562863|ref|YP_627179.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107836636|gb|ABF84505.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 543

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 44/300 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +  +    ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGTGKYAEYYTPLSIASIIAKLLIN--------EPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L         KN  
Sbjct: 242 TLLM-ALAHQIGTNS-------CTLYAQDISQKSLRMLKLNLILNDLTHSL-----KNAI 288

Query: 278 QGSTLSKDLFTGKRFH----YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +G+TL+ + +  K  H    + +SNPPF   +  +   + +   +  LG   P +PK   
Sbjct: 289 EGNTLT-NPYHSKECHGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDK 345

Query: 334 GSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIE 388
             M    LF  H  N L    +  G+ AI++ +  +    A SG E++I R L++  L+ 
Sbjct: 346 SKMPIYTLFFQHCLNML----SHKGKGAIIVPTGFI---SAKSGVENKIVRHLVDERLVY 398

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
            +V +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+   D
Sbjct: 399 GVVCMPSQVF--ANTGTNVSIIFFQKTPSAK-EVVLIDASKLGEEYTENKNKKTRLRTSD 455


>gi|237721637|ref|ZP_04552118.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4]
 gi|229449433|gb|EEO55224.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4]
          Length = 476

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 124/315 (39%), Gaps = 63/315 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++     +            P +  T+ DP 
Sbjct: 129 VKGAIYESILEKNGQDKKSGAGQYFTPRSLISAMVDV----------TRPQIGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++            L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDYMKKQSQDKGKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP 238

Query: 271 DLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRF 324
            + ++     +L K  D+      +  L+NPPFG +     D        E KN +L   
Sbjct: 239 IICQD-----SLEKEPDILV----NVILANPPFGTRPSGSVDINRSDFYVETKNNQLN-- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                        FL H+   L+     GGRAA+VL  + LF G  G+GE  IR+ LL  
Sbjct: 288 -------------FLQHIMLSLKT----GGRAAVVLPDNVLFEG--GAGEV-IRKKLLSE 327

Query: 385 DLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +  I+ LPT +F+   + A  L+      T+            D+W        K  +
Sbjct: 328 FNLHTILRLPTGIFYAQGVKANVLFFTKGSGTK------------DIWFYDYRTDVKHTL 375

Query: 444 INDDQRRQILDIYVS 458
             +  +R  LD +VS
Sbjct: 376 ATNPMQRHHLDDFVS 390


>gi|289664156|ref|ZP_06485737.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 514

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 128/332 (38%), Gaps = 61/332 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIHCVKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDDLYGPGVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRF---HYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +     +  I+ G++L      G+     +  LSNPPFG                   
Sbjct: 237 NGEG----AGPIRLGNSLG---IAGRDLPPANIILSNPPFGTAK---------------- 273

Query: 322 GRFGPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           G  GP       K S+  + FL H+   L+     GGRAA+VL  + LF    G   ++I
Sbjct: 274 GGGGPTRDDLTYKTSNKQLAFLQHIYRGLK----PGGRAAVVLPDNVLFEAGVG---TDI 326

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSI 434
           RR L++   +  ++ LPT +F+   + T +           R       AT   DL +++
Sbjct: 327 RRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAANPRQDTGCTQATWVYDLRSNM 386

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            + G KR        +   D Y +  NG   R
Sbjct: 387 PSFG-KRTPFGPTHLKPFEDAYGTDPNGASPR 417


>gi|32263452|gb|AAP78480.1| M.AhdI [Aeromonas hydrophila]
          Length = 532

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 45/273 (16%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           V  G   + TP++V+     ++          SP +   + DP CG+G FLT A+++V +
Sbjct: 260 VRSGMGQYFTPKEVIDFIICMM----------SPNVRELVVDPFCGSGHFLTSALDYVRN 309

Query: 230 CGSHHKIPPILVPHGQELE-PETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTL---- 282
             SH K   +      E      H +  +  ++R   +D R   D   NI+    L    
Sbjct: 310 --SHGKADKLF----HEFAFTRLHGIEKSDRMVRIAMTDMRLHGDGHSNIRCTDALLPFD 363

Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-- 339
              DL+  + F   ++NPPFG     D            L +FGP    +   + + L  
Sbjct: 364 NYPDLYR-ETFDLVVTNPPFGVDLPADA-----------LHQFGPFELALDRKTAISLEI 411

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
           + L   L+L    GGR AIV+    L N         +R WL+E+ +I AIV+LP + F 
Sbjct: 412 VALERCLQL-LKPGGRMAIVIPDGVLSN----KNTQYVRDWLVEHAVIRAIVSLPIETFS 466

Query: 399 -FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            F  NI T + +L   +  E   K++ +  +++
Sbjct: 467 PFGANIKTSVLVLRKLRPNEDISKLRKVFMSEI 499


>gi|167851733|ref|ZP_02477241.1| N-6 DNA methylase [Burkholderia pseudomallei B7210]
          Length = 489

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 49/264 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            +++YE +++   S  + G  +F TPR V    T  ++D      + +P +   + DP C
Sbjct: 145 FNDLYEKILKDLQSAGNAG--EFYTPRAV----TQFMVD------QVNPRLGERVLDPAC 192

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFL  A+ H+     H +   +L     G E +   H +CV  ML+  ++      +
Sbjct: 193 GTGGFLACAIEHLKAQRKHVEDDAVLQNSIFGVEKKQLPHLLCVTNMLLHGIQ------V 246

Query: 273 SKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              I+  +TLS+   D          L+NPPFG   E     +E            P   
Sbjct: 247 PSLIRHDNTLSRPLVDYSNRDMMDVILTNPPFGGTEEP---GIENNF---------PADV 294

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIE 388
           +  + + LFL+ +   L+  PN  GRAA+VL    LF    G G +S I+  LL    + 
Sbjct: 295 RTRETADLFLVLIIELLK--PN--GRAAVVLPDGTLF----GEGVKSRIKERLLAECNLH 346

Query: 389 AIVALPTDLFFRTNIATYLWILSN 412
            IV LP  +F     A Y  I +N
Sbjct: 347 TIVRLPNGVF-----APYTGIKTN 365


>gi|307268427|ref|ZP_07549805.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|306515234|gb|EFM83771.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 230

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 19/164 (11%)

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  KW  D   ++    +    R+G   PK S     FL+H    L+      G  A
Sbjct: 2   NPPYSAKWSADASFLD----DSRFNRYGKLAPK-SKADFAFLLHGYYHLK----DSGTMA 52

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + IL  +K  +
Sbjct: 53  IVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFGTSIPTTVIIL--KKNRD 107

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            R  V  I+A+  +T  +N+ K    +  +   +I+  Y+ R++
Sbjct: 108 NR-DVLFIDASKEFTKGKNQNK----LAPEHIDKIVSTYIERQD 146


>gi|261378715|ref|ZP_05983288.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685]
 gi|269144869|gb|EEZ71287.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685]
          Length = 533

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 50/322 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDP 212
            + I+E+LI+ + S       ++ TP  V  +   +L+ P+     E  G IR++  YDP
Sbjct: 169 FATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV-PE-----EVRGQIRSVDVYDP 222

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L   MN VA      K         Q+         +   L+  L        
Sbjct: 223 SAGSGTLL---MN-VAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSL-------- 270

Query: 273 SKNIQQGSTL----SKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             N+ QG+T+     KD  +G  K+F + +SNPPF   +   +D +E E +N E  RF  
Sbjct: 271 -NNVVQGNTILSPAHKDA-SGRLKKFDFIVSNPPFKLDFSDFRDQLEDE-ENCE--RFFA 325

Query: 327 GLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIR 378
           G+PKI            LF+ H+     L  N  G+AAIVL +  +    A SG + +IR
Sbjct: 326 GIPKIKPKKKEKMEIYQLFIQHIL--FSLKEN--GKAAIVLPTGFI---TAQSGIDKKIR 378

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             L+EN ++  +V++P+++F  T   T + IL   K    +  V LI+A+ L T    + 
Sbjct: 379 EHLVENKMLAGVVSMPSNIFATT--GTNVSILFIDKA--NKDGVVLIDASGLGTKTSVDE 434

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            ++ +++  + ++I + +  ++
Sbjct: 435 NQKTVLSRVEEQKICNTFTHKQ 456


>gi|84624925|ref|YP_452297.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368865|dbj|BAE70023.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 514

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 54/303 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIHCIKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDALYGPDVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +     +  I+ G++L          +  LSNPPFG                   G  
Sbjct: 237 HGEG----AGPIRLGNSLGTAGRDLPPANIILSNPPFGTAK----------------GGG 276

Query: 325 GPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           GP       K S+  + FL H+   L      GGRAA+VL  + LF   AG G +EIRR 
Sbjct: 277 GPTRDDLTYKTSNKQLAFLQHIYRGL----TPGGRAAVVLPDNVLF--EAGLG-TEIRRD 329

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE 437
           L++   +  ++ LPT +F+   + T +           R       AT   DL +++ + 
Sbjct: 330 LMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAANPRQDTGCTQATWVYDLRSNMPSF 389

Query: 438 GKK 440
           GK+
Sbjct: 390 GKR 392


>gi|188577915|ref|YP_001914844.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522367|gb|ACD60312.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 514

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 119/303 (39%), Gaps = 54/303 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIHCIKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDALYGPDVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +     +  I+ G++L          +  LSNPPFG                   G  
Sbjct: 237 HGEG----AGPIRLGNSLGTAGRDLPPANIILSNPPFGTAK----------------GGG 276

Query: 325 GPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           GP       K S+  + FL H+   L+     GGR+A+VL  + LF    G   ++IRR 
Sbjct: 277 GPTRDDLTYKTSNKQLAFLQHIYRGLK----PGGRSAVVLPDNVLFEAGVG---TDIRRD 329

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE 437
           L++   +  ++ LPT +F+   + T +           R       AT   DL +++ N 
Sbjct: 330 LMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAANPRQDTGCTQATWVYDLRSNMPNF 389

Query: 438 GKK 440
           GK+
Sbjct: 390 GKR 392


>gi|167010572|ref|ZP_02275503.1| hypothetical protein Ftulh_07629 [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 322

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 24/156 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+L++  GS+     E F TPR +V     ++          +P   +T+YDP  
Sbjct: 156 LSQIYENLLKEMGSDGGNSGE-FYTPRPLVKAIVDVV----------NPQAGQTVYDPAA 204

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +       
Sbjct: 205 GTCGFLIDAYEHMYSKELSTTQLKFLNKETFFGKEKTPLSYVMGVMNMILHGIT------ 258

Query: 272 LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKK 304
            S NI + +TL KD+ +     R++  L+NPPFG K
Sbjct: 259 -SPNINKANTLVKDIRSLEEKDRYNIILANPPFGGK 293


>gi|159026847|emb|CAO89098.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 677

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 99/246 (40%), Gaps = 35/246 (14%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V LA  ++ DP              + DP CG+GGFL  A+NHV        
Sbjct: 163 EFFTPHPIVRLAVEMI-DPKPN---------EKIIDPACGSGGFLIQAINHVRQNNPEFN 212

Query: 236 IPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           I   +     G E  P+   V ++GM+    E          I   + L +D      F 
Sbjct: 213 IATFVQESITGIEFNPD---VALSGMIRLVFEGGT----GSEIICTNALIEDEKLNNSFD 265

Query: 294 YCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             L+NPPFG K + +   +        K HK+          P I  G    ++ +   +
Sbjct: 266 VILTNPPFGNKGKVEDQKILQSYLLARKWHKSA--SNSWEASPTILAGQSPDILFIEKSI 323

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIA 404
           +L    GGR AIVL    L N   G     IR WL     I  +V++P + F  + T I 
Sbjct: 324 KL-LRAGGRMAIVLPDGLLQNISNGP----IRHWLRSQTKILGVVSIPPEAFVPYGTGIK 378

Query: 405 TYLWIL 410
           T L ++
Sbjct: 379 TSLLVV 384


>gi|58616450|ref|YP_195579.1| Type I restriction-modification system (specificity subunit)
           [Azoarcus sp. EbN1]
 gi|56315912|emb|CAI10555.1| Type I restriction-modification system (specificity subunit)
           [Aromatoleum aromaticum EbN1]
          Length = 540

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 64/285 (22%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LH D        +++EH++R+       G   F TPR ++  A   ++DP          
Sbjct: 150 LHLDRADADTKGDLFEHVLRQIKQAGELG--QFRTPRHIIR-AIVEIIDPK--------- 197

Query: 205 MIRTLYDPTCGTGGFLTDAMNHV------------------------ADCGSHHKIPPIL 240
           +  T+YDP  GT GFL  A NH+                         D  S  ++  + 
Sbjct: 198 IGETIYDPAAGTAGFLVAAYNHIRLANSSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQ 257

Query: 241 VP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-----LFTGKRFH 293
                G +++P+   +    + +R L +     L +N+   +TL  +         + +H
Sbjct: 258 SKTFFGNDVDPKMVRLATMNLTLRGLPN--VHILLRNVLT-TTLDNERKADLCLPQEGYH 314

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPF  +   DKD +  + K G            +   +LFL ++ + L      G
Sbjct: 315 VVLANPPFSGR--VDKDRIVDDVKIG----------TTTATELLFLKYMMDSLR----PG 358

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GR  +++    LF G  G+   E+RR L+EN+ +EA+++LP  +F
Sbjct: 359 GRCGVIVPEGVLF-GSTGA-HKELRRQLIENNRVEAVMSLPGGVF 401


>gi|307825359|ref|ZP_07655578.1| nucleotidyltransferase substrate binding protein, HI0074 family
           [Methylobacter tundripaludum SV96]
 gi|307733534|gb|EFO04392.1| nucleotidyltransferase substrate binding protein, HI0074 family
           [Methylobacter tundripaludum SV96]
          Length = 623

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 45/260 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +  ++YD   
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRAIVQVV----------QPKIGESIYDGAV 205

Query: 215 GTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++   G+     H I      +G+E +   + + +  M++  +E+    
Sbjct: 206 GSAGFLCEAFDYLTAQGNLTTGDHNILQTRTFYGKEKKSLAYVIAIMNMILHGIET---- 261

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL++   D+    R+   L+NPPFG K  K            E+ +  P 
Sbjct: 262 ---PNIIHTNTLAENLADIQDKDRYDIVLANPPFGGKERK------------EVQQNFP- 305

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL H    L      GGR  +V+ ++ L N    S    +R+ LLE+  +
Sbjct: 306 -IRTGETAFLFLQHFIKMLR----AGGRGGVVIKNTFLSNTDNAS--VSLRKLLLESCNL 358

Query: 388 EAIVALPTDLFFRTNIATYL 407
             I+  P   F    + T +
Sbjct: 359 HTILDCPGGTFQGAGVKTVV 378


>gi|307827039|ref|ZP_07656760.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
 gi|307732328|gb|EFO03271.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
          Length = 172

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 33/198 (16%)

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +           P  L   GQE++  T A+      +      P+  
Sbjct: 1   PTCGSGSLLLKASDEA---------PRGLTIFGQEMDNATSALARMNSRVSTTTLPPK-- 49

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFG 325
               I +G+T++   +       K F + ++NPPF  K W    +  E E       RF 
Sbjct: 50  ----IWKGNTIADPQWKDGNGKLKTFDFAVANPPFSNKNWTSGINPQEDEFD-----RFV 100

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P   +G   FL+H+   L+      G+ A++L    LF   A   E+ IR  L++  
Sbjct: 101 WGIPPEKNGDYTFLLHILKSLK----STGKGAVILPHGVLFRSNA---EARIRENLIKQG 153

Query: 386 LIEAIVALPTDLFFRTNI 403
            I+ I+ LP +LF+ T I
Sbjct: 154 YIKGIIGLPANLFYGTGI 171


>gi|207859654|ref|YP_002246305.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|206711457|emb|CAR35842.1| putative Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 421

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 42/221 (19%)

Query: 208 TLYDPTCGTGGFLTDAM-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + +DP CG+G F+++ + N VA  GS + +  +              +    ML+  L  
Sbjct: 158 SFFDPACGSGEFISEIIKNQVAISGSEYDVDRL-------------KISKMKMLVNDL-- 202

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P         +G  L K+      F   LSNPPF  K   D           E+     
Sbjct: 203 SPSNISPSYFTEGHNLKKN------FDIILSNPPFSLKIPFD----------MEMHFCMY 246

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P  S+    FL +    L+      GRAAI+L    LF  R G  E EIR+ +++N+ 
Sbjct: 247 GKPPTSNADFAFLQYCIFMLK----DNGRAAIILPDGILF--REGK-EYEIRKKIIKNNH 299

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           I AI+ LP  +F  T IAT + +    K +++   + +IN 
Sbjct: 300 ISAIIYLPKGMFKTTAIATNIIVF---KKKQKTNDILMINV 337


>gi|308184243|ref|YP_003928376.1| type I restriction enzyme M protein [Helicobacter pylori SJM180]
 gi|308060163|gb|ADO02059.1| type I restriction enzyme M protein [Helicobacter pylori SJM180]
          Length = 543

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 127/296 (42%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL+          P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLV--------SEPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD     +  + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKD--HKGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N   L P G G  AIV+ +  +    A SG E++I R L++  L+  +V 
Sbjct: 350 IYTLFFQHCLNM--LSPKGKG--AIVVPTGFI---SAKSGVENKIVRHLVDERLVYGVVC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVILIDASKLGEEYTENKNKKTRLRTSD 455


>gi|260592886|ref|ZP_05858344.1| type I restriction-modification system, M subunit [Prevotella
           veroralis F0319]
 gi|260535175|gb|EEX17792.1| type I restriction-modification system, M subunit [Prevotella
           veroralis F0319]
          Length = 508

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 137/312 (43%), Gaps = 49/312 (15%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
            K +FED +      +  K G+L +   N    E+  D   DR M  +IYE +++   S 
Sbjct: 113 VKEVFEDLN------QYMKNGILLRQVVNVIN-EIEFDDATDRHMFGDIYEGILKDLQSA 165

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--- 226
            + G  +F TPR +       L          SP +  T+ D T GTGGFLT A+N+   
Sbjct: 166 GNAG--EFYTPRALTDFIIQQL----------SPVLGETVGDFTSGTGGFLTSALNYLQK 213

Query: 227 -VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V            ++  G E +P  + + +  +L+  +ES   R        G+ +S D
Sbjct: 214 QVKTTDDRRLFQKAVI--GHEWKPLPYLLSITNLLLHDVESPNIRHCD---SLGTKMS-D 267

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              G + +    NPP+G       DA  K +   E         + S+ + LF++ +  +
Sbjct: 268 FKEGDKVNVIAMNPPYGGS----TDAASKSNFPMEF--------RSSETADLFMVLIMYR 315

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+      GRAA+++    LF G  G+ +  I++ +L +  +  I+ LP  +F   T+IA
Sbjct: 316 LK----ANGRAAVIVPDGFLF-GTDGA-KLAIKQKMLRDFNLHTIIRLPGSIFAPYTSIA 369

Query: 405 TYLWILSNRKTE 416
           T +   +N + E
Sbjct: 370 TNILFFNNERAE 381


>gi|7467226|pir||T28670 hypothetical protein - Salmonella choleraesuis
 gi|1679865|emb|CAA68056.1| unnamed protein product [Salmonella enterica]
          Length = 417

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 42/221 (19%)

Query: 208 TLYDPTCGTGGFLTDAM-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + +DP CG+G F+++ + N VA  GS + +  +              +    ML+  L  
Sbjct: 154 SFFDPACGSGEFISEIIKNQVAISGSEYDVDRL-------------KISKMKMLVNDL-- 198

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P         +G  L K+      F   LSNPPF  K   D           E+     
Sbjct: 199 SPSNISPSYFTEGHNLKKN------FDIILSNPPFSLKIPFDM----------EMHFCMY 242

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P  S+    FL +    L+      GRAAI+L    LF  R G  E EIR+ +++N+ 
Sbjct: 243 GKPPTSNADFAFLQYCIFMLK----DNGRAAIILPDGILF--REGK-EYEIRKKIIKNNH 295

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           I AI+ LP  +F  T IAT + +    K +++   + +IN 
Sbjct: 296 ISAIIYLPKGMFKTTAIATNIIVF---KKKQKTNDILMINV 333


>gi|291613558|ref|YP_003523715.1| restriction modification system DNA specificity domain protein
           [Sideroxydans lithotrophicus ES-1]
 gi|291583670|gb|ADE11328.1| restriction modification system DNA specificity domain protein
           [Sideroxydans lithotrophicus ES-1]
          Length = 815

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 49/254 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++     ++ DP              + DP C
Sbjct: 135 LGDAFEYLLSVLGSQGDAG--QFRTPRHIIDFMVEIV-DPQKG---------ERILDPAC 182

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  H+    +   +   L P          HG ++ P+   + +  + +   
Sbjct: 183 GTAGFLISAWKHILKHNTKKNLGDQLTPEQRAYIAANVHGYDISPDMVRLSLVNLYLHGF 242

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +DP      ++ +  TL+ +    +     L+NPPF       K  + K HK     RF
Sbjct: 243 -TDP------HVVEYDTLTSEEKWNETADVILANPPF----MSPKGGI-KPHK-----RF 285

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                + +   +LF+ ++A  L   PN  GRAAI++    +F  ++GS   ++R+ L++N
Sbjct: 286 S---VQATRSEVLFVDYIAEHLS--PN--GRAAIIVPEGIIF--QSGSAYKQLRQMLVKN 336

Query: 385 DLIEAIVALPTDLF 398
            L+ A+++LP+ +F
Sbjct: 337 SLV-AVISLPSGVF 349


>gi|168464564|ref|ZP_02698467.1| N-6 DNA Methylase family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632954|gb|EDX51408.1| N-6 DNA Methylase family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 417

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 42/221 (19%)

Query: 208 TLYDPTCGTGGFLTDAM-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + +DP CG+G F+++ + N VA  GS + +  +              +    ML+  L  
Sbjct: 154 SFFDPACGSGEFISEIIKNQVAISGSEYDVDRL-------------KISKMKMLVNDL-- 198

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P         +G  L K+      F   LSNPPF  K   D           E+     
Sbjct: 199 SPSNISPSYFTEGHNLKKN------FDIILSNPPFSLKIPFD----------MEMHFCMY 242

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P  S+    FL +    L+      GRAAI+L    LF  R G  E EIR+ +++N+ 
Sbjct: 243 GKPPASNADFAFLQYCIFMLK----DNGRAAIILPDGILF--REGK-EYEIRKKIIKNNH 295

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           I AI+ LP  +F  T IAT + +    K +++   + +IN 
Sbjct: 296 ISAIIYLPKGMFKTTAIATNIIVF---KKKQKTNDILMINV 333


>gi|302553244|ref|ZP_07305586.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302470862|gb|EFL33955.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 374

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 39/229 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-VCVAGMLIRRLES 266
           T+ DP CGTGGFL  A  +            IL  +G +L PE    +   G+    L  
Sbjct: 40  TITDPACGTGGFLLAAAEY------------ILHEYGNQLTPEQRQDLSSGGIWGTELVR 87

Query: 267 DPRRDLSKNI-------QQGSTL--SKDLFTG---KRFHYCLSNPPFGKKWE----KDKD 310
           +  R  + N+         G  L  +KD       KR    L+NPPFGKK       D  
Sbjct: 88  NTARLAAMNLFLHGIGQPTGPALVRTKDALAAPPDKRASLVLANPPFGKKSSITVYGDDG 147

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           +  +E    E   F       ++  + F+ H+A+ LE+     GRAA+V+  + LF G  
Sbjct: 148 SAAREAIAYERRDF---WVTTTNKQLNFVQHIASLLEI----HGRAAVVVPDNVLFEG-- 198

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           G+GE+ IRR LL+   +  ++ LPT +F+   +   +     ++    R
Sbjct: 199 GAGET-IRRRLLKEYDVHTLLRLPTGIFYAGGVKANVLFFERKQARPER 246


>gi|197121942|ref|YP_002133893.1| N-6 DNA methylase [Anaeromyxobacter sp. K]
 gi|196171791|gb|ACG72764.1| N-6 DNA methylase [Anaeromyxobacter sp. K]
          Length = 486

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 59/329 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE  I+R G+    G E + TPR ++     ++          +P +   +YDP C
Sbjct: 157 LSMLYEEKIKRMGNAGRNGGE-YYTPRPLIRAMVQVV----------APKVGERIYDPAC 205

Query: 215 GTGGFLTDAMNHV-ADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++    G   K    L      G+E +   + + +  M++  +E     
Sbjct: 206 GSAGFLCEAFDYLKGKPGLTTKDLKTLQEKTFFGKEKKSLAYVIGIMNMILHGIE----- 260

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH--KNGELGRFG 325
             + NI   +TL++   D+    R    L+NPPFG K  K+   V++    ++GE     
Sbjct: 261 --APNILHTNTLAENLADIQEKDRVDVILANPPFGGKERKE---VQQNFAIRSGET---- 311

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLEN 384
                    + LFL H    L+     GGRA IV+ ++ L  N  A  G   +R+ LLE 
Sbjct: 312 ---------AFLFLQHFIKMLK----AGGRAGIVIKNTFLSGNDNASVG---LRKLLLET 355

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  ++  P   F    + T +          +    QL        + RN GK    +
Sbjct: 356 CNLHTVLDCPAGTFQGAGVKTVVLFFEKGAPTRKIWFYQL-------DAGRNLGKTNP-L 407

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           NDD     L +  ++     S +LD +T 
Sbjct: 408 NDDDLVDFLRLEKTKAESAKSWVLDTKTL 436


>gi|254447352|ref|ZP_05060818.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
 gi|198262695|gb|EDY86974.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
          Length = 498

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 48/272 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE +++   S  + G  +F TPR V       +           P +  T+ DP C
Sbjct: 144 LGTMYEQILKDLQSAGNAG--EFYTPRAVTQFMVNRV----------DPKLEDTVMDPAC 191

Query: 215 GTGGFLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GTGGFLT A++    H  +           +  G E +P  H +    +++  +E     
Sbjct: 192 GTGGFLTCAIDYKRKHYVETPEQEATLQNTIA-GVEKKPLPHLLATTNLILHGIE----- 245

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TL+   +D    +R    ++NPPFG    +++D +E    +    R    
Sbjct: 246 -VPDQIKHDNTLARPLRDWGPKERVDVIVANPPFGG---QEEDGIETNFPSAFRTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + +D  M   +HL          GGRAA+VL    LF    G G ++ ++  LLE   
Sbjct: 298 --ETADLFMTLFIHLLRD-------GGRAAVVLPDGFLF----GEGMKTRLKEKLLEECN 344

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           +  IV LP  +F   T I T L   +  K  E
Sbjct: 345 LHTIVRLPNGVFNPYTGIKTNLLFFTKGKPTE 376


>gi|284108605|ref|ZP_06386423.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829885|gb|EFC34174.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 271

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 28/178 (15%)

Query: 133 LYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L K+   F  ++ H +    D ++ + YE+L+R F +E  +    F TP +V  +   ++
Sbjct: 115 LSKLVAIFESLDFHANRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKVV 174

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
               D          +T+YDPTCG+G  L  A +           P  +  +GQE++  T
Sbjct: 175 GIGSDTR------QDQTIYDPTCGSGSLLLKAADEA---------PNGITVYGQEMDNAT 219

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKK 304
           +++    M+   L + P  DL      G+TL+   F       K F + ++NPPF  K
Sbjct: 220 YSLARMNMI---LHNHPTADL----WHGNTLAAPYFKNQNGSLKTFDFAVANPPFSAK 270


>gi|257457514|ref|ZP_05622682.1| type I restriction-modification system [Treponema vincentii ATCC
           35580]
 gi|257445137|gb|EEV20212.1| type I restriction-modification system [Treponema vincentii ATCC
           35580]
          Length = 480

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 37/264 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++ + G +   GA  + TPR +++    ++           P +  T+ DP CGTG
Sbjct: 136 IYESILEKNGQDKKSGAGQYFTPRPLINAMVDVV----------QPKITETVADPACGTG 185

Query: 218 GFLT---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL    D M   +D  S  +        G ++ P    +    + +  + +D     + 
Sbjct: 186 GFLLAAYDYMRKQSDEQSKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGAD-----TT 240

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I+   +L  +          L+NPPFG +      +V+      +L      +   S+ 
Sbjct: 241 PIKCEDSLEHE--PEHLVDVLLANPPFGAR---PAGSVDISTMRSDL------IVTTSNN 289

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + FL H+   L+     GGRA IVL  + LF    G+GE  +R+ LL++  +  I+ LP
Sbjct: 290 QLNFLQHIMVMLK----DGGRAGIVLPDNVLFAD--GAGEI-LRKKLLKDFNLHTILRLP 342

Query: 395 TDLFFRTNI-ATYLWILSNRKTEE 417
           T +F+   + A  L+    + T+E
Sbjct: 343 TGIFYANGVKANVLFFEKGKPTQE 366


>gi|313207213|ref|YP_004046390.1| n-6 DNA methylase [Riemerella anatipestifer DSM 15868]
 gi|312446529|gb|ADQ82884.1| N-6 DNA methylase [Riemerella anatipestifer DSM 15868]
 gi|315022985|gb|EFT36006.1| type I restriction enzyme M protein [Riemerella anatipestifer
           RA-YM]
 gi|325335341|gb|ADZ11615.1| Type I restriction-modification system methyltransferase subunit
           [Riemerella anatipestifer RA-GD]
          Length = 515

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 43/249 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +     + G   F TPR ++ +   L+           P    T+ DP  GT
Sbjct: 151 DLYEYMLSKIAEAGTNG--QFRTPRHIIRMMVELM----------QPQQEDTVCDPAMGT 198

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL     ++ +      +           + HG E++P    +    + +  +ES   
Sbjct: 199 AGFLVATGEYLHERHQDWFLDKTFRRHFSEDMFHGIEIDPSMMRIASMNLQLHGIES--- 255

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                NI  GS L++      ++   L+NPPF       K A+  +     L +    + 
Sbjct: 256 ----PNITGGSALAESNTITGKYSLILANPPF-------KGALNYDEVESSLLQ----VT 300

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L+L    GGRAA+++    LF     +    IR+ L+EN  ++ 
Sbjct: 301 KTKKTELLFLSLILRMLKL----GGRAAVIVPDGVLFGN--STAHKNIRKELIENHQLQG 354

Query: 390 IVALPTDLF 398
           ++++P+ +F
Sbjct: 355 VISMPSGVF 363


>gi|298375501|ref|ZP_06985458.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19]
 gi|298268001|gb|EFI09657.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19]
          Length = 558

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 142/323 (43%), Gaps = 49/323 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S I+EHL++ F +       ++ TPR +  +   LL+  D+A  +   G+  T YDP+ 
Sbjct: 185 FSRIFEHLLKGFNNAGGGKYAEYYTPRAIAQVMARLLV-GDNADLR---GV--TCYDPSA 238

Query: 215 GTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTG  L    + + +  C            + Q++  ++  +    +++  L +      
Sbjct: 239 GTGTLLMALAHQIGEDRCS----------IYSQDISEKSSEMLRLNLILNSLSASL---- 284

Query: 273 SKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             N+ QG+TL++   T      K+F + +SNPPF   + + +D +       +  RF  G
Sbjct: 285 -PNVVQGNTLTEPSHTELSGALKKFDFIVSNPPFKLDFPEYRDTLA-----ADTIRFWAG 338

Query: 328 LP----KISDGS------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           +P    KI+         + FL H+ N L+   + G  A +V +       R       I
Sbjct: 339 VPNKVKKINPEKPQMGIYLCFLQHVINSLK---DTGKSAVVVPTGFITSKKRNNVVAYNI 395

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            + +++  ++   +++PT++F  T     +       T +   KV LI+A+ L    +  
Sbjct: 396 LQKIVDEHIVCGCISMPTNVFATTGTNVSVIFFDKSATAD---KVILIDASKLGEEYKEG 452

Query: 438 GKKRRIINDDQRRQILDIYVSRE 460
             ++R + D++   I++ + ++E
Sbjct: 453 NNQKRRLLDNEIDLIVNTFRNKE 475


>gi|270292633|ref|ZP_06198844.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
 gi|270278612|gb|EFA24458.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
          Length = 497

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 56/314 (17%)

Query: 104 IASFSDNAKAIFEDFDFS----STIARLEKAGLLYKICKNF-------SGIELHPDTVPD 152
           I  F  N K   +D  FS      I ++ K   L K+           SGI+   DT   
Sbjct: 92  IFPFMKNLKGDTDDTAFSRYMREAIFQINKPATLQKVISILDEFPTRDSGIDFDSDTQGI 151

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP
Sbjct: 152 NDIGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDP 199

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLE 265
             G+ GFL  A  ++       +  P  +        HG + +     +    M++  +E
Sbjct: 200 AMGSAGFLVSASRYLKRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMMLHGVE 259

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  +  I    +LS+D     ++   L+NPPF    + D  +      N  L    
Sbjct: 260 -------NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTS------NDLLATV- 305

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLEN 384
               K     +LFL      L+     GGRAA+++    LF + +A  G   IR+ ++EN
Sbjct: 306 ----KTKKTELLFLALFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG---IRQEIVEN 354

Query: 385 DLIEAIVALPTDLF 398
             ++A++++P+ +F
Sbjct: 355 HKLDAVISMPSGVF 368


>gi|109947644|ref|YP_664872.1| type I restriction enzyme M protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714865|emb|CAJ99873.1| type I restriction enzyme M protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 543

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 127/295 (43%), Gaps = 34/295 (11%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P   + +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLVN--------EPVKSKKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLI-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKNAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD + GK   Y +SNPPF   +  +   +     +  LG   P +PK     M 
Sbjct: 294 TNPYHSKD-YKGK-MDYIVSNPPFKLDFSNEHATISNNKSDFSLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LF  H  + L    N   + AIV+ +    + ++G   ++I R L++  L+  ++ +
Sbjct: 350 IYTLFFQHCLSML----NPKSKGAIVVPTG-FISAKSGVA-NKIVRHLVDEKLVYGVICM 403

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           P+ +F   N  T + ++  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 404 PSQVF--ANTGTNVSVIFFQKT-PSENEVILIDASKLGEEYTENKNKKTRLRTSD 455


>gi|323481373|gb|ADX80812.1| Type I restriction-modification system methylation subunit
           [Enterococcus faecalis 62]
          Length = 343

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 38/277 (13%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIFEDFDF 120
           + + V + GY+   + EY  + L           N  N     +AS  +    +F+D D 
Sbjct: 81  IATIVDILGYAI--SPEYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDL 138

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F
Sbjct: 139 QSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 196

Query: 178 MTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            TP  V   +A  + LD  +  F        +++DPT G+G  + +  N++    +H   
Sbjct: 197 YTPHMVSDMMAQIVTLDQKERRF-------FSVFDPTMGSGSLMLNVRNYL----TH--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
           P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F  
Sbjct: 243 PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDA 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            + NPP+   W  D   ++    N   G+  P   +I
Sbjct: 298 VVMNPPYSANWSADTTFLDDSRFN-RYGKLAPNPKQI 333


>gi|254470280|ref|ZP_05083684.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062]
 gi|211960591|gb|EEA95787.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062]
          Length = 519

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 48/272 (17%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++   E  +GA  + TPR        +L+D    L +  PG    + DP  G
Sbjct: 155 GDLYEGLLQKNAEETKKGAGQYFTPR--------VLIDVIVDLMQPQPG--ERIQDPATG 204

Query: 216 TGGFL----------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           TGGFL          TD    + + G+  +       HG E   +T+ + +  + +   +
Sbjct: 205 TGGFLIAADRYMKARTDGYYDLGEEGAKFQKEQAF--HGMENVRDTYRLLLMNLYLHDFD 262

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  + +I  G TLS      ++    L+NPPFG    K       E  N       
Sbjct: 263 -------TSHILAGDTLSPKGEGMEKVDVILTNPPFGPAGGKPTRDDLSETAN------- 308

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                +S   + F+ H    L+     GGRAAIV+  + LF    G G++  ++ + E D
Sbjct: 309 -----VSSYQLPFVEHCIRGLK----PGGRAAIVIPDNVLFED--GRGKALRQKMMRECD 357

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            +  I+ LPT +F+   + T +  L    T E
Sbjct: 358 -VHTILRLPTGIFYAQGVKTNVIFLKKSTTVE 388


>gi|283853809|ref|ZP_06371031.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283570796|gb|EFC18834.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 501

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 137/339 (40%), Gaps = 72/339 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +  T+YD  C
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRAMVRVI----------KPKIGETIYDGAC 205

Query: 215 GTGGFLTDAMNHV----------ADCGSHHKIPPILVPH-----GQELEPETHAVCVAGM 259
           G+ GFL +A +++             GS   +  +         G+E +   + + +  M
Sbjct: 206 GSAGFLCEAFDYLRYGPDGKESENGNGSTLTVDQLRALQTSTFFGKEKKSLAYVIAIMNM 265

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  +E+        NI   +TL+++L   +   R+   L+NPPFG K            
Sbjct: 266 ILHGIEA-------PNIIHTNTLAENLADVQEKDRYDIILANPPFGGK------------ 306

Query: 317 KNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
              E G      P K  + + LFL H    L+     GGRAA+V+ ++ L N    S   
Sbjct: 307 ---ERGEIQQNFPIKTGETAFLFLQHFIKYLK----AGGRAAVVIKNTFLSNSDNAS--R 357

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LL++  +  I+  P   F    + T +       +  +           +W    
Sbjct: 358 ALRQELLQSCNLFTILDCPGGTFLGAGVKTVVLFFQKGASTRK-----------VWYYTL 406

Query: 436 NEGK---KRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           + G+   K   +NDD   + + +  +  + + S ++D +
Sbjct: 407 DPGRKMGKTTALNDDDLAEFVSLQATFADSEKSWIMDVK 445


>gi|332662758|ref|YP_004445546.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331572|gb|AEE48673.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 511

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 114/267 (42%), Gaps = 54/267 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           MS++YE  I+  G+    G E + TPR ++     ++          +P + +T+YD   
Sbjct: 170 MSHLYEDKIKNMGNAGRNGGE-YYTPRPLIKTIVKVV----------APKIGQTIYDGAV 218

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRL 264
           G+ GFL +A  ++ + G+  + P +             +G+E +   + + +  M++  +
Sbjct: 219 GSAGFLVEAFEYLKNGGADGR-PNLSTKDVETLQKRTFYGKEKKSLAYIIGIMNMILHGV 277

Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           E       + NI   +TL++   D+    R+   L+NPPFG K               E 
Sbjct: 278 E-------APNIVHTNTLAENLSDIQEKDRYDIILANPPFGGK---------------ER 315

Query: 322 GRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P K  + + LFL H    L+     GG+A +V+ ++ L N    S    +R+ 
Sbjct: 316 AEVQQNFPIKTGETASLFLQHFIKILK----AGGKAGVVIKNTFLSNTDNAS--ISLRKL 369

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYL 407
           LLE   +  ++ LP   F    + T +
Sbjct: 370 LLETCNLHTVLDLPGGTFTGAGVKTVV 396


>gi|315154176|gb|EFT98192.1| N-6 DNA Methylase [Enterococcus faecalis TX0031]
          Length = 411

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 22/178 (12%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPP+  KW    DA      +     +    PK +     FL+H   +L+      G
Sbjct: 178 VISNPPYSAKW----DASPTLLDDPRFSHYEKLAPK-TKADFAFLLHGFYRLK----DSG 228

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SNR 413
             A+VL    LF G A   E  IR+ LLE+  I+A++ LP +LFF T+I T + +L  NR
Sbjct: 229 TMAVVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGLPANLFFGTSIPTVIIVLKKNR 285

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
           +T +    V  I+++  +    ++GK +  ++DD   +I+  Y  R++  K++ +  Y
Sbjct: 286 QTRD----VMFIDSSKEF----DKGKNQNSLSDDHINKIIHTYKERKDIEKYAHLASY 335


>gi|237721953|ref|ZP_04552434.1| type I restriction-modification system [Bacteroides sp. 2_2_4]
 gi|229448822|gb|EEO54613.1| type I restriction-modification system [Bacteroides sp. 2_2_4]
          Length = 490

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 125/283 (44%), Gaps = 45/283 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++Y  L+  F  E  +   + +TP +VV L T L+    D   K +      L DP  
Sbjct: 146 VGDLYNQLLYIFAEEAGKKINNVLTPTEVVSLITKLI----DGDRKNA-----CLCDPAS 196

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +    +   G+          +GQE+    +A+    +++   +         
Sbjct: 197 GSGTLLVEVGKKMGIRGTE--------LYGQEVNWNLYALTKMNLMLNGFKG-------A 241

Query: 275 NIQQGSTLS--KDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               G +LS  K L  G  ++F   +S PPF  KW     A E+ + +    RF  G+P 
Sbjct: 242 TFLWGDSLSNPKLLDHGGLRKFDIVVSVPPFADKW-----AAEEAYSDF-YKRFKYGIPP 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S  +  ++ H+   L       G+A +V+    LF     + ES+IR  ++E++L+EA+
Sbjct: 296 KSQVTWAYISHILASLR----NDGQAVVVVPVGVLFR----NTESKIREQIIEHNLLEAV 347

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           + LP +LF+   I+T + +    + E  R +   ++A   + S
Sbjct: 348 IELPPNLFYGAAISTAILVF---RKERMRTQTLFVDARKGYIS 387


>gi|289667521|ref|ZP_06488596.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 514

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 119/303 (39%), Gaps = 54/303 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE L+++  +E   GA  + TPR ++          D  +    P +   + DP  
Sbjct: 127 LGDLYEGLLQKNANETKSGAGQYFTPRALI----------DSIIRCIKPQLGDVIQDPAA 176

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  ++         P +              G EL P T  + +   L+  +
Sbjct: 177 GTAGFLIAADAYIKAQHDDLYGPGVTAKKRSFQREKAFVGMELVPGTRRLALMNCLLHGM 236

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +     +  I+ G++L          +  LSNPPFG                   G  
Sbjct: 237 NGEG----AGPIRLGNSLGAAGRDLPPANIILSNPPFGTAK----------------GGG 276

Query: 325 GPGLP----KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           GP       K S+  + FL H+   L+     GGRAA+VL  + LF    G   ++IRR 
Sbjct: 277 GPTRDDLTYKTSNKQLAFLQHIYRGLK----PGGRAAVVLPDNVLFEAGVG---TDIRRD 329

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRNE 437
           L++   +  ++ LPT +F+   + T +           R       AT   DL +++ + 
Sbjct: 330 LMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTATNPRQDTSCTQATWVYDLRSNMPSF 389

Query: 438 GKK 440
           GK+
Sbjct: 390 GKR 392


>gi|126179042|ref|YP_001047007.1| N-6 DNA methylase [Methanoculleus marisnigri JR1]
 gi|125861836|gb|ABN57025.1| N-6 DNA methylase [Methanoculleus marisnigri JR1]
          Length = 505

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 133/331 (40%), Gaps = 68/331 (20%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            + R+ +  +I S  +  K +F        +  + K  LL +       + +   T  +R
Sbjct: 85  VHVRDKVFPFIQSLHNGEKTLFAQ-QMRDAVFMIPKPSLLQEAVALIDEMNI---TAQNR 140

Query: 154 -VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +IYE+L+ +  +    G   F TPR ++ +   L+ DPD         +   + DP
Sbjct: 141 DTQGDIYEYLLSQLSTAGKNGQ--FRTPRHIIRMIVELV-DPD---------ITDRICDP 188

Query: 213 TCGTGGFLTDAMNH------------VADCGSHHKIPPILVP-------------HGQEL 247
            CGT GFL ++  H            V D G +H +    +              +G + 
Sbjct: 189 ACGTAGFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWEKLWSDTFYGFDF 248

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  +++  +++        +I+   TLSK     +R+   L+NPPF      
Sbjct: 249 DSTMTRISLMNLMLHGIKA-------PHIELKDTLSKRYTEEERYTVVLANPPF------ 295

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            K +++K   N  L          S G+    + L  ++      GG+  +++    LF 
Sbjct: 296 -KGSIDKSDINDSL----------SLGTTKTELLLVERMIQLLTIGGKCGVIVPDGVLFG 344

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +     E+RR LLE + +E IV++P+ +F
Sbjct: 345 --SSRAHKELRRMLLEENQLEGIVSMPSGIF 373


>gi|159897811|ref|YP_001544058.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890850|gb|ABX03930.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 481

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 130/300 (43%), Gaps = 52/300 (17%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           ++ AKA+ +   F      ++   LL ++    + I+ +  +    + +++YE L+    
Sbjct: 96  TNQAKAMIQSV-FEDAYNYMKNGTLLRQVINKINEIDFN-RSADRHLFNDVYEKLLSDL- 152

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            + +  A ++ TPR V      +L           P +  +L DP  GTGGFL  A+ ++
Sbjct: 153 -QAAGNAGEYYTPRTVTQFMIEML----------KPRLGESLLDPAAGTGGFLVSAVEYI 201

Query: 228 ADCGSHHKIPPILVP-----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                H   P  L        G E +P  H + +  +++  +          N+Q  +TL
Sbjct: 202 RRNDVH--TPSDLETLQANIRGIEKKPLPHLLGITNLILHGIN-------LPNLQHANTL 252

Query: 283 SKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           ++   +     +     +NPPFG    +++D +E            P L +  + + LFL
Sbjct: 253 ARSYSSYGVDDQVDIIATNPPFGG---QEEDGIENNF---------PELFRTRETADLFL 300

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           + +   L+  PN  GRAA++L    LF    G G ++ I+  LL+N  +  IV LP  +F
Sbjct: 301 VLIMRLLK--PN--GRAALILPDGTLF----GEGIKTRIKEELLKNCNLHTIVRLPNGVF 352


>gi|325958864|ref|YP_004290330.1| N-6 DNA methylase [Methanobacterium sp. AL-21]
 gi|325330296|gb|ADZ09358.1| N-6 DNA methylase [Methanobacterium sp. AL-21]
          Length = 505

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 52/261 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+L+    +    G   F TPR ++ +   ++           P +   + DP CGT
Sbjct: 143 DIYEYLLSELKTSGKNGQ--FRTPRHIIQMMVKIV----------DPKVNEIICDPACGT 190

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-- 274
            GFL ++  H+    +  ++  I    GQE   +   +  +  L  +  S    D  +  
Sbjct: 191 AGFLVNSYRHILKANTSQELIKI-DDEGQEYNFKGDKLSKSEYLALKNNSLFGFDFDQTM 249

Query: 275 ----------------NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                            I Q +T+S        F   L+NPPF       K ++ K+  N
Sbjct: 250 VRISLMNLMMHGISNPQIDQINTISMRYNQNPNFDVVLANPPF-------KGSINKDELN 302

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEI 377
            +           +   +LFL  + N L    N GGR A+++    LF N RA      I
Sbjct: 303 DDFS------INTTKTEILFLELMYNIL----NIGGRCAVIVPQGVLFGNSRA---HKSI 349

Query: 378 RRWLLENDLIEAIVALPTDLF 398
           R+ LLE+  ++A++++P+ +F
Sbjct: 350 RKKLLEDCRLDAVISMPSGVF 370


>gi|317505570|ref|ZP_07963481.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella salivae DSM 15606]
 gi|315663318|gb|EFV03074.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella salivae DSM 15606]
          Length = 505

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 143/332 (43%), Gaps = 62/332 (18%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
            K +FED +      +  K G+L +   N    E+  D   DR M  +IYE +++   S 
Sbjct: 113 VKEVFEDLN------QYMKNGILLRQVINIIN-EIEFDDADDRHMFGDIYEGILKDLQSA 165

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-- 227
            + G  +F TPR +       L          +P +  T+ D T GTGGFLT A+N++  
Sbjct: 166 GNAG--EFYTPRALTDFIIQQL----------NPKLGETVGDFTSGTGGFLTSALNYLNK 213

Query: 228 ----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                + G   +   +    GQE +P  + + +  +L+  +E       S NI+   +LS
Sbjct: 214 QIKTTNDGRLFQNAAV----GQEWKPLPYLLSITNLLLHDVE-------SPNIRHCDSLS 262

Query: 284 ---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               D     +      NPP+G       DA  K +         P   + S+ + LF++
Sbjct: 263 TKMSDFKESDKVDVIAMNPPYGGS----TDASVKSN--------FPMAFRSSETADLFMV 310

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
            +  +L+      GRAA+++    LF   A   +  I+  LL+   +  I+ LP  +F  
Sbjct: 311 LIMYRLK----KDGRAAVIVPDGFLFG--ADGAKLAIKSELLKKFNLHTIIRLPGSIFAP 364

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            T+IAT +   +N K +   G  + ++  D+W
Sbjct: 365 YTSIATNILFFNNEKAD---GAEEGLSTKDIW 393


>gi|304311154|ref|YP_003810752.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301796887|emb|CBL45099.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 475

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 57/258 (22%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   IYE  +    S  + G  +F TPR +    T ++          +P    T+ DP
Sbjct: 142 HLFGQIYETFLSELQSAGTLG--EFYTPRAITQFMTEMV----------APKQGETVLDP 189

Query: 213 TCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            CGTGGF+T  + H+    S         H +       G E +P  + +    +++  +
Sbjct: 190 ACGTGGFITAVIEHLKASASSVAEREAIGHNV------RGWEYKPLPYMLANTNLILHDI 243

Query: 265 ESDPRRDLSKNIQQGSTLSKDL--FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                  ++ +IQ G +L + L  ++ K R    ++NPPFG         V   ++N   
Sbjct: 244 -------ITPSIQFGDSLQRPLSEYSRKDRVDVIIANPPFG-------GVVSNNNENNFP 289

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRW 380
             +     + +D  ++ +MHL          GGRAAIVL    L     G G +  IR+ 
Sbjct: 290 QSYRT--KESADLFLILMMHLMKD-------GGRAAIVLPDGSL----TGDGVKQRIRQK 336

Query: 381 LLENDLIEAIVALPTDLF 398
           LLE+  +  IV LP  +F
Sbjct: 337 LLEDCNLHTIVRLPNSVF 354


>gi|86130654|ref|ZP_01049254.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819329|gb|EAQ40488.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 544

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 109/251 (43%), Gaps = 48/251 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +I+E+++ +     + G   F TPR ++ L   L+           P +  T+ DP+ GT
Sbjct: 144 DIFEYMLSKMEGGGTSGQ--FRTPRHIIRLMVELM----------QPTLEDTICDPSAGT 191

Query: 217 GGFLTDAMNHVADCGSHHKIPP---------ILVPHGQELEPETHAVCVAGMLIRRLESD 267
            GFL  A  ++    +H+ +            ++ +G E +     +    + +  +E  
Sbjct: 192 AGFLVGAKEYI---DTHYDVMEREAAKEHIDTMMFNGMEFDATMLRIASMNLFLHGVE-- 246

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                + NI     +SKD      +   L+NPPF  K   DK+++  + K          
Sbjct: 247 -----APNIIDVDAVSKDNDIADAYTLVLANPPF--KGTIDKESIASDLKT--------- 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   S   +LFL  +  ++++    GGRAA+++    LF   +      IR  ++ N  +
Sbjct: 291 VTSTSKTELLFLALMLRQMKM----GGRAAVIVPDGVLFG--SSKAHKSIREEIVANHKL 344

Query: 388 EAIVALPTDLF 398
           EA++++P+ +F
Sbjct: 345 EAVISMPSGVF 355


>gi|317485044|ref|ZP_07943926.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923579|gb|EFV44783.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 486

 Score = 64.3 bits (155), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 47/272 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDP 212
              +IYE +++   S  S G  +F TPR +   +A  + L   D            + D 
Sbjct: 143 AFGSIYESILKLLQSAGSSG--EFYTPRALTDFMARHVGLKLGD-----------KVADF 189

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFL  A   +      +    IL    HG E +P  + +CV  +L+  ++ +P  
Sbjct: 190 ACGTGGFLNSARAWLEGQAKTNAQREILARSFHGTEKKPLPYLLCVTNLLLNGVD-EPL- 247

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                I+ G++L+K   D     +F   L NPP+G     ++  +++           P 
Sbjct: 248 -----IRYGNSLTKSTGDYTEADKFDVVLMNPPYGGS---EQLTIQQNF---------PS 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + ++ + LFL+ +  +L+      GRAA+V+    LF    G  ++EI+R LL N  +
Sbjct: 291 NMRSAETADLFLILIMARLK----ATGRAAVVIPDGFLF---GGGNKTEIKRELLSNFNL 343

Query: 388 EAIVALPTDLFF-RTNIAT-YLWILSNRKTEE 417
             IV LPT +F   T+IAT  L+   N  T+E
Sbjct: 344 HTIVRLPTSVFSPYTSIATNVLFFDGNGPTKE 375


>gi|254777457|ref|ZP_05218973.1| type I restriction-modification system, M subunit [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 474

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 128/318 (40%), Gaps = 62/318 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           F  T  R+    LL  +    + I     D +    M+++YE ++R       +  E F 
Sbjct: 104 FKETYNRMLSGYLLRDVVNKVNEINFASSDDI--HTMAHLYESMLREMRDAAGDSGE-FY 160

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------ 232
           TPR ++               +  P +   + DP CGTGGFL +A+ H++   +      
Sbjct: 161 TPRPIIRFIVQ----------QVDPRLGEVILDPACGTGGFLVEALEHLSPKVTTTAQLR 210

Query: 233 --HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
             H  +       G E +P    + +  +++  +          NI +G+ L++ +    
Sbjct: 211 ALHENL------RGIEKKPLPFLLGMMNLVLHGVG-------QPNITRGNALAESITQIS 257

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +R    L+NPPFG + EK   A            F P   + ++ + LFL  +   L+
Sbjct: 258 KARRVDVILTNPPFGGEEEKSIQA-----------NF-PADKQTAETAWLFLQLVIRMLK 305

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGR  IV+ +  LF G  G   + I++ LL    +  IV LP   F     A Y 
Sbjct: 306 ----DGGRCGIVVPNGLLFGGGVG---ARIKKQLLTECNLHTIVRLPDGAF-----APYT 353

Query: 408 WILSNRKTEERRGKVQLI 425
            I SN    ++ G+ + I
Sbjct: 354 DIPSNLLFFDKTGRTKEI 371


>gi|159901787|ref|YP_001548032.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894826|gb|ABX07904.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 571

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 110/248 (44%), Gaps = 38/248 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S  YE L+ R  SE +  A +F TPR V+     L+          +P +  T+YDP 
Sbjct: 167 TISLFYEDLLERMSSE-NRTAGEFHTPRAVIRFMVELM----------APQIGETVYDPA 215

Query: 214 CGTGGFLTDA---MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            G+ GFL  A   M   A     H         G E +  +  +    M++  + + P+ 
Sbjct: 216 YGSAGFLVQAFLFMQPFARTIEEHTSLHEQTFFGIEKKALSALLGTMNMVLHGVNA-PKL 274

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  +++  ++  D  +G+R+   L+NPPFG          E  H             K
Sbjct: 275 LRANTLEE--SMQGD--SGQRYDVVLTNPPFG--------GTEGAHIQQNFA------VK 316

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            +   +LFL H+  KL+  PN   RAAIV+    LF  R+G+  +E+++ LL+   + A+
Sbjct: 317 ANATELLFLQHIIKKLKRTPN--ARAAIVVPEGTLF--RSGAF-AEVKQDLLQQFHLFAV 371

Query: 391 VALPTDLF 398
            +LP   F
Sbjct: 372 FSLPPGTF 379


>gi|118466595|ref|YP_884147.1| type I restriction-modification system, M subunit [Mycobacterium
           avium 104]
 gi|118167882|gb|ABK68779.1| type I restriction-modification system, M subunit [Mycobacterium
           avium 104]
          Length = 495

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 117/283 (41%), Gaps = 59/283 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            M+++YE ++R       +  E F TPR ++               +  P +   + DP 
Sbjct: 158 TMAHLYESMLREMRDAAGDSGE-FYTPRPIIRFIVQ----------QVDPRLGEVILDPA 206

Query: 214 CGTGGFLTDAMNHVADCGS--------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           CGTGGFL +A+ H++   +        H  +       G E +P    + +  +++  + 
Sbjct: 207 CGTGGFLVEALEHLSPKVTTTAQLRALHENL------RGIEKKPLPFLLGMMNLVLHGVG 260

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    NI +G+ L++ +      +R    L+NPPFG + EK   A           
Sbjct: 261 -------QPNITRGNALAESITQISKARRVDVILTNPPFGGEEEKSIQA----------- 302

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            F P   + ++ + LFL  +   L+     GGR  IV+ +  LF G  G   + I++ LL
Sbjct: 303 NF-PADKQTAETAWLFLQLVIRMLK----DGGRCGIVVPNGLLFGGGVG---ARIKKQLL 354

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
               +  IV LP   F     A Y  I SN    ++ G+ + I
Sbjct: 355 TECNLHTIVRLPDGAF-----APYTDIPSNLLFFDKTGRTKEI 392


>gi|315187185|gb|EFU20942.1| N-6 DNA methylase [Spirochaeta thermophila DSM 6578]
          Length = 552

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 49/256 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +    YE+L+++FG    E AE + TPR +V     ++           P +  T+YDP 
Sbjct: 165 IFGRAYEYLLQKFGQN-KEFAE-YFTPRHIVDRMVQII----------DPEIGETIYDPA 212

Query: 214 CGTGGFLTDAMNHV---------ADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIR 262
           CGTGGF+  A   V         +       +  +   H  G E  P    + +  M++ 
Sbjct: 213 CGTGGFIVRAFEWVRAKIERKTISAAEKERLLRNLKEKHLIGVEHVPIVFKLALMNMILH 272

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +  S     L +N    S  ++D+   K +   L+NPPFG              K   L 
Sbjct: 273 KDGS----SLLQNDDSLSNKAQDIHKNK-YDVILANPPFGPT------------KQERLA 315

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +F      I     LF+ H+ N L      GGRAA+VL    LF+ +       I R L+
Sbjct: 316 QFE---YHIKLYEALFIQHMMNAL----RPGGRAAVVLKEGLLFDSKKML--RAICRKLV 366

Query: 383 ENDLIEAIVALPTDLF 398
           E   + A+++LP  +F
Sbjct: 367 EQFEVLAVISLPNGVF 382


>gi|291547735|emb|CBL20843.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 544

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 147/340 (43%), Gaps = 58/340 (17%)

Query: 139 NFS---GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           NFS     E H D   D     I+E+LI+ + +       ++ TP  +  +   LL+   
Sbjct: 169 NFSFEEAFEKHYDFFAD-----IFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGNA 223

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-PPILVPHGQELEPETHAV 254
             L           YDP+ GTG  L             HKI         Q++   ++ +
Sbjct: 224 TDLHSIE------CYDPSAGTGTLL---------MALAHKIGEDKCTIFAQDISQRSNKM 268

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKD 308
               +++  L S     +     QG TL      S +    + F Y +SNPPF   +   
Sbjct: 269 LKLNLILNSLVSSLDHAI-----QGDTLIAPYHKSDNGQELRTFDYVVSNPPFKMDFSDT 323

Query: 309 KDAVEKEHKNGELGRFGPGLPKI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLS 361
           ++ +          RF  G+PK+      SM    LF+ H+ N L+      G+ AIV+ 
Sbjct: 324 RERIA-----AMPVRFWAGVPKVPAKKKESMAIYTLFIQHVLNSLK----STGKGAIVVP 374

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRG 420
           +      ++G  E +I + +++  ++   +++P+++F  T    + L+  ++RKT+    
Sbjct: 375 TG-FVTAKSGV-EKKILQHIVDEHIVYGCISMPSNVFANTGTNVSVLFFDNSRKTD---- 428

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           KV LI+A+ L    ++   ++R + D +  +I+D ++++E
Sbjct: 429 KVVLIDASKLGEEYKDGNNQKRRLRDFEIDKIVDTFLNKE 468


>gi|325912651|ref|ZP_08175034.1| type I restriction-modification system, M subunit [Lactobacillus
           iners UPII 60-B]
 gi|325478072|gb|EGC81201.1| type I restriction-modification system, M subunit [Lactobacillus
           iners UPII 60-B]
          Length = 895

 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 142/325 (43%), Gaps = 31/325 (9%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++ + YE+ + +F  E  +    F TP +V      L+   +  +  +   M   L+D
Sbjct: 137 DDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRTIARLIGIGNIDVNVQRHYM---LHD 193

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L  A +   +    + I  I   +GQE   +T  +     ++          
Sbjct: 194 PAAGSGSLLIRAADEAPNRADGNSIVDI---YGQEKYTDTAGLAKMNFILHN-------K 243

Query: 272 LSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            +  I+  +TLS   +  +     +F + + NPPF  K   D   V  E K      +G 
Sbjct: 244 ATGEIKAANTLSDPQYIDEFGELTKFDFIVMNPPFSDKDWTDGIKV-SEDKFKRFDGYG- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +P   +G   + +H+   L+  P G  +A I+L    LF G A   E  IR+ +++   
Sbjct: 302 AIPPEKNGDYAWFLHVLKALK--PTG--KAGIILPHGILFRGNA---EETIRKAIIKKKW 354

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ IV+LP +LF+ T I   + IL +++  ++R  +  I+A+D +   + +G K R+   
Sbjct: 355 IKGIVSLPANLFYGTGIPACI-ILVDKENADKREGIFFIDASDGY---KKDGNKNRLREQ 410

Query: 447 DQRRQILDIYVSRENGKFSRMLDYR 471
           D  + +       E   +SR + + 
Sbjct: 411 DIEKIVQTFNNRTEIKGYSRFVSFE 435


>gi|293570791|ref|ZP_06681840.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E980]
 gi|291609144|gb|EFF38417.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E980]
          Length = 489

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 112/258 (43%), Gaps = 50/258 (19%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE  ++   S  + G  +F TPR V       +           P +   + D  CGTG
Sbjct: 150 IYESFLKDLQSAGNAG--EFYTPRAVTDFMVKAV----------KPVLGDKIGDFACGTG 197

Query: 218 GFLTDAMN----HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GFLT A+N     V +   + +I    V +G E +   H +CV  MLI  ++ DP     
Sbjct: 198 GFLTSALNELDKQVGNSLENREIYNKSV-YGIEKKSLPHMLCVTNMLIHDID-DP----- 250

Query: 274 KNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            NI  G+ L    K+L   + F   L NPP+G     +KD+V+            P   +
Sbjct: 251 -NILHGNALETDYKELRKMEPFDVVLMNPPYGG---SEKDSVKVNF---------PTELR 297

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GRAA++L    LF     +G+  I++ L     +  +
Sbjct: 298 SSETADLFMNVIMYRLK----KNGRAAVILPDGFLFG--TDNGKFNIKKKLFSEFNLHTV 351

Query: 391 VALPTDLF-----FRTNI 403
           V +P  +F      RTNI
Sbjct: 352 VRMPHSVFAPYTPIRTNI 369


>gi|254491510|ref|ZP_05104689.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010]
 gi|224462988|gb|EEF79258.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 49/286 (17%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           V    +S++YE  I+  G+    G E + TPR ++     +            P +  T+
Sbjct: 152 VEKHELSHLYETKIKNMGNAGKNGGE-YYTPRPLIRAMIDVT----------KPKIGETI 200

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVPHGQELEPETHAVCVAGMLI 261
           YD   G+ GFL +A +++   G   K               + +E +   + + +  M++
Sbjct: 201 YDGAAGSAGFLCEAYDYLRQGGREKKQLSTNDLKTLQERTFYAKEKKSLAYVIAIMNMIL 260

Query: 262 RRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +E       + N+   +TL+   +D+    +    L+NPPFG K  K           
Sbjct: 261 HGIE-------TPNVMHTNTLAENLQDIQPSNQHDIILANPPFGGKERK----------- 302

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E+ +  P   K  + + LFL H    L+     GGRAAIV+ ++ L N    +    +R
Sbjct: 303 -EVQQNFP--IKTGETAFLFLQHFMKTLK----PGGRAAIVIKNTFLSN--TDNAAIALR 353

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           + LLEN  +  ++  P   F    + T +   +  +  ++    QL
Sbjct: 354 KELLENHNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTQKVWNYQL 399


>gi|291615456|ref|YP_003522564.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
 gi|291582518|gb|ADE16974.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
          Length = 486

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 52/254 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +    G   F TPR ++ +   L+          +P    T+ DP CGT
Sbjct: 144 DLYEYMLSKIATAGQNG--QFRTPRHIIKMMVELV----------APTPQDTIADPACGT 191

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPETHAVCVAGMLIRRL 264
            GFL  A  ++ +   HH  P I             + HG + +     +    M +  +
Sbjct: 192 CGFLVAAGEYLRE---HH--PDIFHDAALRQHFNHGLFHGTDFDSSMLRIGAMNMTLHGV 246

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E    R L    Q+G+ +        R+   L+NPPF       K +++ E    +L R 
Sbjct: 247 EDPDIRGLDSLSQEGTGIR------DRYTVILANPPF-------KGSLDYESVAKDLLR- 292

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L       +LFL     +L+     GGR A ++    LF   +     EIRR L+E+
Sbjct: 293 ---LTSTKKTELLFLALFLCQLK----AGGRCACIVPDGVLFG--SSKAHREIRRHLVED 343

Query: 385 DLIEAIVALPTDLF 398
             ++ ++++P+ +F
Sbjct: 344 HKLDGVISMPSGVF 357


>gi|317013881|gb|ADU81317.1| type I restriction enzyme M protein [Helicobacter pylori
           Gambia94/24]
          Length = 543

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLVN--------KPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD     +  + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 INPYHSKD--HKGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L   P G G  AI++ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNMLS--PKGKG--AIIVPTGFI---SAKSGIENKIVRHLVDERLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVVLIDASKLGEEYTENKNKKTRL 451


>gi|126665709|ref|ZP_01736690.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
 gi|126629643|gb|EBA00260.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
          Length = 494

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 113/273 (41%), Gaps = 50/273 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE +++   S  + G  +F TPR V                +  P +   + DP C
Sbjct: 144 LGDMYEQILKDLQSAGNAG--EFYTPRAVTQFMVN----------RVDPKLEEKVMDPAC 191

Query: 215 GTGGFLTDAMNH-----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           GTGGFLT  ++H     V        +   ++  G E +P  H +    +++  +E    
Sbjct: 192 GTGGFLTCTIDHKRTRYVQTPQDEQTLQRTII--GVEKKPLPHLLATTNLILHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             +   I+  +TL++ L +    +R    ++NPPFG     ++D +E         R   
Sbjct: 246 --VPDQIKHDNTLARPLISWGPKERVDIIIANPPFGG---MEEDGIETNFPAAFRTR--- 297

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
              + +D  M   +HL          GGRAA+VL    LF    G G ++ ++  LL   
Sbjct: 298 ---ETADLFMTLFIHLLRN-------GGRAAVVLPDGFLF----GEGMKTRLKEKLLNEC 343

Query: 386 LIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
            +  IV LP  +F   T I T L   +  K  E
Sbjct: 344 NLHTIVRLPNGVFSPYTGIKTNLLFFTKGKPTE 376


>gi|323136162|ref|ZP_08071244.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocystis sp. ATCC 49242]
 gi|322398236|gb|EFY00756.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocystis sp. ATCC 49242]
          Length = 487

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 129/308 (41%), Gaps = 54/308 (17%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +LH  T       ++YE L+++   E   GA  + TPR ++ L   LL           P
Sbjct: 116 DLHWFTEERDSFGDLYEGLLQKNAEETKRGAGQYFTPRVLIELLVRLL--------APQP 167

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           G I  + DP  GTGGFL  A  ++ A           L P  QE + + HA  + GM   
Sbjct: 168 GEI--IQDPAAGTGGFLIAANRYMRAKTDDFFD----LAPKAQEFQLK-HA--LQGM--E 216

Query: 263 RLESDPRRDL---------SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK-DKDAV 312
            +E   R  L         S +I+ G TLS       +    L+NPPFG    K  +D +
Sbjct: 217 NVEGVYRLLLMNLFLHGVDSWHIELGDTLSPAGAAMNKADVILTNPPFGPAGGKPSRDDI 276

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAG 371
                             +S   + F+ H    L+     GGRAA+V+  + LF +GR  
Sbjct: 277 TV-------------TATVSSYQLPFVEHCIRTLK----PGGRAAVVVPDNVLFEDGRG- 318

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
               E+RR L++   +  I+ LPT +F+   + T +   S  K E   G+ + +   DL 
Sbjct: 319 ---RELRRMLMDYCNLHTILRLPTGIFYAQGVKTNVIFFS--KGEADSGQTKKVWIYDLR 373

Query: 432 TSIRNEGK 439
            ++   GK
Sbjct: 374 ANMPAFGK 381


>gi|300087442|ref|YP_003757964.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527175|gb|ADJ25643.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 484

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 53/264 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++          +P +  T+YD  C
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRSIIKVV----------NPQIGETIYDGAC 205

Query: 215 GTGGFLTDAMNHVA--------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           G+ GFL ++ +++         D  +  K       +G+E +   + + +  M++  +E 
Sbjct: 206 GSAGFLCESFDYLKASNTLTTRDMDTLQKS----TFYGKEKKSLAYVIAIMNMILHGIE- 260

Query: 267 DPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                 + NI   +TL++   D+    R+   ++NPPFG K  K            E+ +
Sbjct: 261 ------APNILHTNTLTENLADIQEKDRYDIIMANPPFGGKERK------------EIQQ 302

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             P   +  + + LFL H    L+     GGRA IV+ ++ L N    S    +R+ L+E
Sbjct: 303 NFP--IRTGETAFLFLQHFIKMLK----AGGRAGIVIKNTFLSNSDNAS--VSLRKLLME 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYL 407
           +  +  I+  P   F    + T +
Sbjct: 355 SCNLHTILDCPGGTFLGAGVKTVV 378


>gi|15668302|ref|NP_247097.1| type I restriction-modification enzyme 2 subunit M
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2495819|sp|Q57596|Y132_METJA RecName: Full=Uncharacterized protein MJ0132
 gi|1592267|gb|AAB98113.1| type I restriction-modification enzyme 2, M subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 220

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 5/116 (4%)

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +  IVL S  LF G     E +IR+ ++E DLIEAI+ LP  LF+       + IL+  K
Sbjct: 48  KVGIVLDSGALFRG---GKEKKIRKEIVEKDLIEAIILLPEKLFYNVTAPGIVMILNKNK 104

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469
            EER+GK+  INA+ L      E ++   + ++   +I+D+Y + E+ + FSR++D
Sbjct: 105 PEERKGKILFINAS-LEFEKHPEVRRLNRLGEENIDKIVDVYENWEDIEGFSRVVD 159


>gi|163756220|ref|ZP_02163335.1| type I restriction-modification system, M subunit [Kordia algicida
           OT-1]
 gi|161323832|gb|EDP95166.1| type I restriction-modification system, M subunit [Kordia algicida
           OT-1]
          Length = 476

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 132/309 (42%), Gaps = 51/309 (16%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           T   L+  I+  +   +++FED     T   ++   L  ++    + I+ +  T    + 
Sbjct: 90  TLKELDITISPQAKIIRSVFED-----TYNYMKNGTLFRQVINVINEIDFN-STTERHLF 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   S  S G  ++ TPR V      ++          +P +  ++ DP CG
Sbjct: 144 NDIYETILKDLQSAGSSG--EYYTPRAVTQFMVDMV----------NPQLGESVLDPACG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  ++ V +     K   +L     G E +P  H +C   +++         DL 
Sbjct: 192 TGGFLTCTIDAVRNQVKTPKDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGF------DLP 245

Query: 274 KNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +++ + LSK   D     +    LSNPPFG         VE++   G    F P   +
Sbjct: 246 V-VRRDNLLSKPYADWGAKDKLDIILSNPPFG--------GVEED---GTETNF-PKKFR 292

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEA 389
             + + LFL  +   L+      GR AIVL    LF    G G ++ ++  LL    +  
Sbjct: 293 TKETADLFLALIIKLLK----DKGRCAIVLPDGTLF----GEGMKTRLKEELLHKCNLHT 344

Query: 390 IVALPTDLF 398
           IV LP  +F
Sbjct: 345 IVRLPNGVF 353


>gi|207109985|ref|ZP_03244147.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 138

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 20/149 (13%)

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGG 354
           SNPP+  KW  D + +    +     RF P   L   +   + F MH+ + L    +  G
Sbjct: 1   SNPPYSTKWVGDSNPLLMNDE-----RFSPAGVLAPKNAADLAFTMHMLSYL----SNSG 51

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LFF T+IAT + +L   K
Sbjct: 52  TAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPENLFFGTSIATCILVLKKNK 108

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRI 443
            ++       I+A+  +     EGKK ++
Sbjct: 109 KDDT---TLFIDASKEFVK---EGKKNKL 131


>gi|219871847|ref|YP_002476222.1| restriction enzyme subunit alpha/N-6 DNA methylase [Haemophilus
           parasuis SH0165]
 gi|219692051|gb|ACL33274.1| restriction enzyme, alpha subunit/N-6 DNA methylase [Haemophilus
           parasuis SH0165]
          Length = 637

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 53/289 (18%)

Query: 178 MTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSH 233
           +TPR +V L   L+ L P D++F           DP CGT GFL  AM+H+    D  + 
Sbjct: 329 LTPRHIVELFCELIDLKPTDSVF-----------DPCCGTAGFLIAAMHHMLQKTDKEAE 377

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKR 291
            +       HG EL+P    +    M++       R D   N++Q   L ++      K 
Sbjct: 378 KRKIRKEQLHGIELQPYMFTIATTNMIL-------RGDGKSNLEQEDFLKQNPAQLQLKG 430

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  + NPP+ +                   +  P L +IS     F  HL + L     
Sbjct: 431 CNVGMMNPPYSQG-----------------SKANPNLFEIS-----FTEHLLDSL----T 464

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +++  S +  G++   E  I+  +L+   +E ++ L  + F+       + + S
Sbjct: 465 ADGKAIVIVPQSSM-TGKSKE-EQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFS 522

Query: 412 NRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                E+   V+ IN   D +   ++ G    I   D+++ +LD++  R
Sbjct: 523 TGIPHEKDKIVKFINFENDGFEVQKHIGLVETISAKDKKQHLLDVWFGR 571


>gi|56416309|ref|YP_153384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365232|ref|YP_002144869.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130566|gb|AAV80072.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096709|emb|CAR62332.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 528

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 52/263 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    I+ G+TL  D     +     +NPPFG                      G  
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA-------------------AGTN 276

Query: 328 LPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           + +      S+  + F+ H+   L      GGRAA+V+  + LF+ R G    EIRR L+
Sbjct: 277 ITRTFVHPTSNKQLCFMQHIIETLR----PGGRAAVVVPDNVLFD-RVG---LEIRRDLM 328

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
           +   +  I+ LPT +F+   + T
Sbjct: 329 DKCHLHTILRLPTGIFYAQGVKT 351


>gi|325677722|ref|ZP_08157372.1| hypothetical protein CUS_4267 [Ruminococcus albus 8]
 gi|324110583|gb|EGC04749.1| hypothetical protein CUS_4267 [Ruminococcus albus 8]
          Length = 114

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
           FIW  A  L G ++   +  VI+P  ++RR ECALE T+ AV E+Y          ++  
Sbjct: 23  FIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYKK--NPAYPAKAMC 80

Query: 74  KVAGYSFYNTSEYSLSTLG------STNTRNNLE 101
           +V+ Y F+NTSEY+L+ L       + N RN +E
Sbjct: 81  RVSRYQFFNTSEYTLAELVNDPDHLAANFRNYIE 114


>gi|261855230|ref|YP_003262513.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Halothiobacillus neapolitanus c2]
 gi|261835699|gb|ACX95466.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Halothiobacillus neapolitanus c2]
          Length = 484

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 45/260 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++          +P +   +YD   
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRAMVRVV----------APQIGERIYDGAV 205

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++        +  K       +G+E +   + + +  M++  +E+    
Sbjct: 206 GSAGFLCEAFDYLKSQPNRTTADIKTLQERTFYGKEKKSLAYVIAIMNMILHGIEA---- 261

Query: 271 DLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL+++L   +   RF   L+NPPFG K  K            E+ +  P 
Sbjct: 262 ---PNIVHTNTLAENLADVQDKDRFDIILANPPFGGKERK------------EVQQNFP- 305

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL H    L+     GGRAA+V+ ++ L N    S    +R+ LLE+  +
Sbjct: 306 -IRTGETAFLFLQHFIKLLK----AGGRAAVVIKNTFLSNTDNAS--VSLRKLLLESCNL 358

Query: 388 EAIVALPTDLFFRTNIATYL 407
             ++ +P   F    + T +
Sbjct: 359 HTVLDMPGGTFLGAGVKTVV 378


>gi|19881220|gb|AAM00833.1|AF486547_2 HsdM [Campylobacter jejuni]
          Length = 348

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 52/227 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP+C
Sbjct: 154 LGEVYEKLLKDMGSDGGNSGE-FYTPRPLIK-AMVEVIDPKPK---------ERIYDPSC 202

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRR 263
           G+ GFL ++  H+     +  K   + V            G+E  P ++A+ V  M++  
Sbjct: 203 GSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHE 262

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + S        NI + +TLSK   D+   +++   L+NPPFG K        EKE     
Sbjct: 263 ISS-------PNIIKTNTLSKKITDITEQEKYEVILANPPFGGK--------EKE----- 302

Query: 321 LGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +     P  S+ + +LFL H+   L+      GR AI++    LF
Sbjct: 303 --QIQENFPIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLF 343


>gi|302037934|ref|YP_003798256.1| type I restriction-modification system, methyltransferase subunit
           [Candidatus Nitrospira defluvii]
 gi|300605998|emb|CBK42331.1| Type I restriction-modification system, methyltransferase subunit
           [Candidatus Nitrospira defluvii]
          Length = 484

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 45/260 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +   +YD  C
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRAMVQVV----------KPKLGERIYDGAC 205

Query: 215 GTGGFLTDAMNHVADCGSHH----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++   G       K       +G+E +   + + +  M++  +E     
Sbjct: 206 GSAGFLCEAYDYLTAKGDLSTKDLKTLQEKTFYGKEKKSLAYVIAIMNMILHGIE----- 260

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             + NI   +TL++   D+    R+   L+NPPFG K  K            E+ +  P 
Sbjct: 261 --APNIIHTNTLTENLADIQEKDRYDVVLANPPFGGKERK------------EVQQNFP- 305

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL H    L+     GGR  +V+ ++ L N    S    +R+ LLE+  +
Sbjct: 306 -IRTGETAFLFLQHFIKSLK----AGGRGGVVIKNTFLSNTDNAS--VSLRKLLLESCNL 358

Query: 388 EAIVALPTDLFFRTNIATYL 407
             ++  P   F    + T +
Sbjct: 359 HTVLDCPGGTFQGAGVKTVV 378


>gi|261837872|gb|ACX97638.1| type I restriction enzyme M protein [Helicobacter pylori 51]
          Length = 543

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + S+      ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNSDKGGKYAEYYTPLSIASIIAKLLIN--------EPTQNVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+        Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGEMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SDEGKGAIVVPTGFI---SAKSGIENKIVRHLVDERLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T +  +  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSAIFFKKT-PSEDEVILIDASKLGEEYTENKNKKTRLKGSD 455


>gi|237751945|ref|ZP_04582425.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430]
 gi|229376512|gb|EEO26603.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430]
          Length = 543

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 147/353 (41%), Gaps = 68/353 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++Y+P CG G +L     H  DC            +G ++ P++  +  A  L+   ++ 
Sbjct: 131 SVYNPCCGLGSWLLHLKLHTKDCAF----------YGADINPKSIRIAKALALLLEFKT- 179

Query: 268 PRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                       S   KD+F     T  +F     +PP             +E K     
Sbjct: 180 -----------CSLSIKDIFSEPFKTESKFDKVFCHPPLLSHLSLK---APRESKLAPYN 225

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +    +P I    M F                +A  ++ +S L     G+GE  + ++LL
Sbjct: 226 KTALEIPFIDYSLMRF--------------SKKAVFIVRTSLL---SKGAGE-RLCKYLL 267

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +N L+E+++ LP ++F     +  + ++SN  T +R      INA D +     EGK  +
Sbjct: 268 KNGLLESVIELPDNIFPYKTESYSILVISN--TNKR---CLFINARDFYI---KEGKYHK 319

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +IN     +ILD+Y S++N K+S  ++Y       + +      +    +  L  L  D 
Sbjct: 320 LIN---LEEILDLYFSKQNTKYSNFVEYAKIKGINLCLFESQNST----QIPLGSL-LDC 371

Query: 503 TWR--KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN--EAKTLKVK 551
            +R  ++   + S  +      ++   PYG++++F   ++K+N  + + LK+K
Sbjct: 372 IYRGARIVSKNDSDLISCYDFGIKDFNPYGFSDNFCDSTLKANSKQLEVLKIK 424


>gi|303243808|ref|ZP_07330148.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1]
 gi|302485744|gb|EFL48668.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1]
          Length = 500

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 137/325 (42%), Gaps = 73/325 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+S IYE L+   G+E   G E F TPR ++     ++           P +  T++DP 
Sbjct: 170 VLSQIYEELLLNMGNEAGWGGE-FYTPRPIIRFIIKVI----------KPKIGETVFDPF 218

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPP--ILVP---HGQELEPETHAVCVAGMLIRRLESDP 268
            G+ GFL + + ++ +   +  +    IL+    +G E +P  + +    M++  +    
Sbjct: 219 GGSAGFLIETLKYIQEELGNITVQENDILMHKTLYGHEKKPFPYLLGTMNMVLHGI---- 274

Query: 269 RRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              L+ N  + ++L      ++   +++   ++NPPFG +  K               + 
Sbjct: 275 ---LTPNYYRRNSLGDEDIHNVPESEKYDIIITNPPFGGRENK---------------KV 316

Query: 325 GPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P KI     L L ++  KL+     GGRA ++L    +  G  G     IR  LL 
Sbjct: 317 QDNFPHKIQSTEALALQYIMRKLK----NGGRAGVILPEGQIMFG--GKKFKSIREELLN 370

Query: 384 NDLIEAIVALPTDLF------FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
              + AIV+LP  +F       +TNI  +          E+ G  + I   +L      E
Sbjct: 371 KFNVFAIVSLPQGVFSQMGAGVKTNIVFF----------EKTGSTKEIWYYEL------E 414

Query: 438 GK--KRRIINDDQRRQILDIYVSRE 460
           GK  K++ I D+  + +L+   +RE
Sbjct: 415 GKYTKKQRIKDEDFKDVLNKIKNRE 439


>gi|213612905|ref|ZP_03370731.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647548|ref|ZP_03377601.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 465

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 104/257 (40%), Gaps = 42/257 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  GT
Sbjct: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAGT 178

Query: 217 GGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL +A  +V           G            G EL P T  + +   L+  +E + 
Sbjct: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN- 237

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             D    I+ G+TL  D     +     +NPPFG                  + R    +
Sbjct: 238 -LDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSA------------AGTNITR--TFV 282

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S+  + F+ H+   L      GGRAA+V+  + LF+ R G    EIRR L++   + 
Sbjct: 283 HPTSNKQLCFMQHIIETLR----PGGRAAVVVPDNVLFD-RVG---LEIRRDLMDKCHLH 334

Query: 389 AIVALPTDLFFRTNIAT 405
            I+ LPT +F+   + T
Sbjct: 335 TILRLPTGIFYAQGVKT 351


>gi|297538978|ref|YP_003674747.1| adenine-specific DNA-methyltransferase [Methylotenera sp. 301]
 gi|297258325|gb|ADI30170.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylotenera sp. 301]
          Length = 484

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 47/261 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     +           +P +  T+YD   
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRAMIQV----------TNPKIGETIYDGAV 205

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++        S          +G+E +   + + +  M++  +E     
Sbjct: 206 GSAGFLCEAFDYLRSQPNLSTSDLATLQTSTFYGKEKKSLAYVIAIMNMILHGIE----- 260

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             + NI   +TL++   D+    R+   L+NPPFG K               E       
Sbjct: 261 --APNIIHTNTLAENISDIQEKDRYDIILANPPFGGK---------------ERAEVQQN 303

Query: 328 LP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            P K  + + LFL H    L      GGRAA+V+ ++ L N    S    +R+ LLE+  
Sbjct: 304 FPIKTGETAFLFLQHFIKSLR----AGGRAAVVIKNTFLSNTDNAS--VSLRKLLLESCN 357

Query: 387 IEAIVALPTDLFFRTNIATYL 407
           +  ++  P   F    + T +
Sbjct: 358 LHTVLDCPGGTFLGAGVKTVV 378


>gi|257421715|ref|ZP_05598705.1| predicted protein [Enterococcus faecalis X98]
 gi|257163539|gb|EEU93499.1| predicted protein [Enterococcus faecalis X98]
          Length = 438

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 126/307 (41%), Gaps = 48/307 (15%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G +   TP  ++ +A+ +L            G  R+  D   GTGG          D  
Sbjct: 65  KGKKQDFTPDGIIRVASGVL------------GATRSNADICAGTGGLTIKRYAENPDAQ 112

Query: 232 ------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                 S   +P +L           +AV + G  + R E      L+K+ +  S    D
Sbjct: 113 FYCEEFSDRALPFLLFNLAIR---NINAVVLHGDSLSR-EFKAIYKLTKSTEFSSIEIVD 168

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +    + NPP+   W   K+ +E+E        F    PK S     FL+   ++
Sbjct: 169 EVPATKSETVIMNPPYSLPWNPLKEYLEQER----FSDFDVLAPK-SKADYAFLLQGIHQ 223

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T
Sbjct: 224 LK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPT 276

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR---IINDDQRRQILDIYVSREN- 461
            L +L   +          +N   L+     E KK +   ++ D+   +IL+++ SR+  
Sbjct: 277 VLLVLKKNR----------LNKDILFIDASKEFKKEKAWNVLEDEHVAKILEVFQSRKTI 326

Query: 462 GKFSRML 468
            KFS ++
Sbjct: 327 DKFSSVV 333


>gi|167768049|ref|ZP_02440102.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1]
 gi|167710378|gb|EDS20957.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1]
 gi|291561046|emb|CBL39846.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 488

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 59/313 (18%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I S   + ++ +  +     I ++    LL K+     G+ L  D+  D     
Sbjct: 90  NGVFPFIKSLHPDGESAYSKY-MGDAIFKIPTPALLTKVIDGIDGLNLEGDSKGD----- 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  S    G   F TPR ++ +   L+        K  P  I  + DP  G+ 
Sbjct: 144 LYEYLLSKLESAGKNGQ--FRTPRHIIQMMVELV--------KPVPSDI--ICDPAMGSA 191

Query: 218 GFLTDAMNHV----------ADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           GFL  A  ++          A+   H  H++      +G +++     +    ML+  ++
Sbjct: 192 GFLMAAQQYLRKNHKDLFLNAEQREHFNHEMF-----YGFDMDRTMLRIGAMNMLLHGVD 246

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            DP      NI+   +LS+     +++   L+NPPF  K   D D V  +          
Sbjct: 247 -DP------NIEYKDSLSEMNTDKEKYSLILANPPF--KGSLDYDGVSADLLK------- 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LFL+     +++    GGRAA+++    LF   +      IR+ L+EN 
Sbjct: 291 --VAKTKKTELLFLVLFLRIMKI----GGRAAVIVPDGVLFG--SSRAHKAIRKELIENH 342

Query: 386 LIEAIVALPTDLF 398
            ++A++++P+ +F
Sbjct: 343 KLDAVISMPSGVF 355


>gi|313673807|ref|YP_004051918.1| site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940563|gb|ADR19755.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 466

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 43/252 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V +  +E L+ +  SE  +GA  + TPR ++  +   ++ PD  + KE       + DP 
Sbjct: 116 VKAQAFEGLLEKAASEGKKGAGQYFTPRVLIQ-SIVRVMKPDPLVNKE-----MKICDPA 169

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  A   + +  +   IP   +        +GQEL      + +  + +  L+ 
Sbjct: 170 CGTGGFLVAAYEWLIE-KTGGAIPVDEIKRIKENTYYGQELVARPRRLALMNLFLHGLKP 228

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    I  G T+ +    G+R+   L+NPPFG K              G++     
Sbjct: 229 --------TIYLGDTIYEP-DRGERYDIVLTNPPFGTK------------GAGQIPTRDD 267

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + F+ H+   L+     GGRAAIVL  + LF  +A     E+ + ++E+  
Sbjct: 268 FTVATSNKQLNFVQHIMTILK----KGGRAAIVLPDNCLFEDKA----VEVFKIVMEDCN 319

Query: 387 IEAIVALPTDLF 398
           +  I+ LP   F
Sbjct: 320 LHTILRLPRGTF 331


>gi|227820720|ref|YP_002824690.1| N-6 DNA methylase [Sinorhizobium fredii NGR234]
 gi|227339719|gb|ACP23937.1| N-6 DNA methylase [Sinorhizobium fredii NGR234]
          Length = 511

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 52/282 (18%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++   E   GA  + TPR ++ +   L+        +  PG +  + DP  G
Sbjct: 155 GDLYEGLLQKNAEETKRGAGQYFTPRVLIRVLVRLM--------QPQPGEV--IQDPAGG 204

Query: 216 TGGFLTDAMNHVA-------DCGS-HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TGGFL  A +++        D G    +       HG E  P T  + +  + +  ++SD
Sbjct: 205 TGGFLIAADHYMRARTDNYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD 264

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRF 324
                  ++  G TLS       R +  L+NPPFG       +D  +V            
Sbjct: 265 -------HVDLGDTLSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSVTA---------- 307

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLE 383
                 +S   + F+ H    L+     GGRAAIV+  + LF +GR      ++R+ +++
Sbjct: 308 -----TVSSYQLPFVEHCIRALK----PGGRAAIVVPDNVLFEDGRG----RQLRQMMMD 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
              +  I+ LPT +F+   + T +  L+  KTE    K   I
Sbjct: 355 WCDLHTILRLPTGIFYAQGVKTNVIFLTRGKTETGNTKATWI 396


>gi|168178056|ref|ZP_02612720.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC
           2916]
 gi|182670476|gb|EDT82450.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC
           2916]
          Length = 485

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 49/275 (17%)

Query: 132 LLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           +L KI      +E+   DT  D     +YE+L+ +  +  + G   F TPR ++ +   L
Sbjct: 122 MLSKIVDAIDNLEIQDKDTKGD-----LYEYLLSKVATAGTNGQ--FRTPRHIIKMMAEL 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------- 243
           +        K +P  I  + DP  GT GFL  A  ++ +  S   +   L  H       
Sbjct: 175 M--------KPTPEDI--IVDPAMGTAGFLVGAEEYLREKHSELFLVQGLKDHFNNKMFN 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G +++     +    M++  +++        NI+   +LS+     +++   L+NPPF  
Sbjct: 225 GFDMDRTMLRIGAMNMMLHGVDN-------PNIEYKDSLSETNKDSEKYTLVLANPPF-- 275

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   D +AV  +            L K+S      L+ LA  L +   GG R A ++   
Sbjct: 276 KGSLDYEAVSAD------------LLKVSKTKKTELLFLALFLRILKTGG-RCASIVPDG 322

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            LF   +  G  +IRR +++N+ +EAI+++P+ +F
Sbjct: 323 VLFG--STKGHKDIRREIVDNNKLEAIISMPSGVF 355


>gi|253752154|ref|YP_003025295.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|253753980|ref|YP_003027121.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|251816443|emb|CAZ52079.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|251820226|emb|CAR46647.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|292558742|gb|ADE31743.1| Type I restriction enzyme EcoEI M protein [Streptococcus suis GZ1]
 gi|319758541|gb|ADV70483.1| type I restriction-modification system M protein [Streptococcus
           suis JS14]
          Length = 487

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 65/279 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   S  + G  +F TPR        +L          +P +  T+ D  CG
Sbjct: 148 NDIYEKILKDIQSAGNSG--EFYTPRAATDFIAEML----------NPQLGETMADLACG 195

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLIRRLESDPRR 270
           TGGFLT  +NH+   G   K    +  + Q     E +   H + V  + +  ++ DP+ 
Sbjct: 196 TGGFLTSTLNHL---GQQRKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-DPK- 250

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                I  G+TL K   D    ++F   + NPPFG                 EL      
Sbjct: 251 -----IIHGNTLEKNVRDYTEDEKFDIIMMNPPFG---------------GSELETIKNN 290

Query: 328 LP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLE 383
            P   + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L+E
Sbjct: 291 FPAELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVE 342

Query: 384 NDLIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
              +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 343 EFNLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|328947988|ref|YP_004365325.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328448312|gb|AEB14028.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 480

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 36/249 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++ + G +   GA  + TPR +++    ++           P +  T+ DP CGTG
Sbjct: 136 IYESILEKNGQDKKSGAGQYFTPRPLINAMVDVI----------QPQITETVADPACGTG 185

Query: 218 GFLT---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL    D M   +D     +        G ++ P    +    + +  + +D     + 
Sbjct: 186 GFLLAAYDFMRKQSDEQDKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGTD-----TT 240

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I+   +L  +          L+NPPFG    +   +V+      +L      +   S+ 
Sbjct: 241 PIKCEDSLEHE--PEHLVDVILANPPFGA---RPAGSVDITTMRNDL------IVTTSNN 289

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + FL H+   L+     GGRA IVL  + LF   AG    ++R+ LL++  +  I+ LP
Sbjct: 290 QLNFLQHMMLMLK----DGGRAGIVLPDNVLFADGAG---EKLRKKLLKDFNLHTILRLP 342

Query: 395 TDLFFRTNI 403
           T +F+   +
Sbjct: 343 TGIFYANGV 351


>gi|288801958|ref|ZP_06407399.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica D18]
 gi|288335393|gb|EFC73827.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica D18]
          Length = 473

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 143/380 (37%), Gaps = 76/380 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   IYE ++ + G +   GA  + TPR ++      L           P +  T+ DP 
Sbjct: 129 VKGAIYEGILEKNGQDKKSGAGQYFTPRPLIQAMIDCL----------QPKIGETVCDPA 178

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +++            L     HG +  P    +    + +  + +D   
Sbjct: 179 CGTGGFLLAAYDYMKGQSQDKGKLDFLNNKALHGVDNTPLVVTLASMNLYLHGIGTD--- 235

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----EHKNGELGRFGP 326
                I    +L K+  T       L+NPPFG++     D        E KN +L     
Sbjct: 236 --RSPIACEDSLEKEPET--LVDVILANPPFGERTAGSVDINRPDFYVETKNNQLN---- 287

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                      FL H+   L+     GGRAA+V+    LF  + G+ E  +R+ LL +  
Sbjct: 288 -----------FLQHMMLMLKT----GGRAAVVIPDDILF--KDGAHEI-VRKKLLTDFN 329

Query: 387 IEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  I+ LPT +F+   + A  L+    + T+            D+W        K  ++ 
Sbjct: 330 LHTILRLPTGIFYANGVKANVLFFTKGQPTK------------DIWFYDYRTNVKHTLVT 377

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRR----IKVLRPLRMSFIL--DKTGLARLE 499
              +R  LD +V+  N         RT  Y          R      IL  DKT L    
Sbjct: 378 TKLQRHHLDDFVACYNAA------TRTETYNEETNPAGRWRKYAADDILARDKTSL---- 427

Query: 500 ADITWRKLSPLHQSFWLDIL 519
            DITW K     + F LD L
Sbjct: 428 -DITWIKAGGAEEQFTLDEL 446


>gi|171057995|ref|YP_001790344.1| N-6 DNA methylase [Leptothrix cholodnii SP-6]
 gi|170775440|gb|ACB33579.1| N-6 DNA methylase [Leptothrix cholodnii SP-6]
          Length = 489

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 127/295 (43%), Gaps = 54/295 (18%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +FED         ++   LL ++    +GI+ +  +   +  +++YE +++   S  +
Sbjct: 108 RGVFED-----AYNYMKSGQLLRQVVNKLNGIDFNRQSERHQ-FNDLYEKILKDLQSAGN 161

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----V 227
            G  +F TPR V      ++          +P +   ++DP  GTGGFL  A+ H    V
Sbjct: 162 AG--EFYTPRAVTQFMVDMV----------NPQLGERVFDPATGTGGFLVCAIEHLRRQV 209

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---K 284
            +     ++   ++  G E +   H +CV  +++  +E      +   ++  +TL+   +
Sbjct: 210 HNTEQEAQLQNSIL--GVEKKQLPHMLCVTNLMLHGIE------VPSQVRHDNTLARPLR 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    L+NPPFG   E     +E+           P   +  + + LFL+ +  
Sbjct: 262 DYGAADRVDVVLTNPPFGGIEEP---GIEQGF---------PADVRTKETADLFLVLIKQ 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
            L+      GRAA+VL    LF    G G ++ I+  LL    +  IV LP  +F
Sbjct: 310 LLK----HNGRAALVLPDGTLF----GEGVKTRIKEQLLAECKLHTIVRLPNGVF 356


>gi|323143494|ref|ZP_08078177.1| putative type I restriction-modification system, M subunit
           [Succinatimonas hippei YIT 12066]
 gi|322416779|gb|EFY07430.1| putative type I restriction-modification system, M subunit
           [Succinatimonas hippei YIT 12066]
          Length = 545

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 129/311 (41%), Gaps = 40/311 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S I+E+L++ + S       ++ TP  V ++   LL+D      K+   M   +YDP  G
Sbjct: 185 STIFEYLLKDYNSNGGGTYAEYYTPHSVANIMARLLVDDG----KDYRSM--KIYDPAAG 238

Query: 216 TGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TG  L    + + +  C            + Q++  ++  + +  +++  +       + 
Sbjct: 239 TGTLLIALAHAIGERKCAV----------YTQDISEKSSTMLMLNLILNGMAESLTHVIK 288

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N         +    K+F + +SNPPF   +    D   +   N    RF  G+PKI +
Sbjct: 289 GNTMTHPFHKDENGKLKQFDFVVSNPPFKLDFS---DYQNQLKTNDPFKRFFAGVPKIPN 345

Query: 334 GS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
                    + F  H+   +       GR AIV+ +  L    A SG   +IR++L++N 
Sbjct: 346 KKKESMEIYLCFFQHVIASIR----DAGRGAIVVPTGFL---TAQSGIPLKIRQYLVDNK 398

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++ +V++P+++F  T     +  +              I+A+ L   I++   K+ ++ 
Sbjct: 399 FLKGVVSMPSNIFANTGTNVSVVFIDKAGVNNPI----FIDASKLGDEIKDGKNKKTVLK 454

Query: 446 DDQRRQILDIY 456
           +    +I+  +
Sbjct: 455 NVDIEKIVSTF 465


>gi|210610695|ref|ZP_03288576.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787]
 gi|210152328|gb|EEA83334.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787]
          Length = 545

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 146/331 (44%), Gaps = 36/331 (10%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + I+E+LI+ +  +  + AE + TP  +  +   +++ P+            T+YDP  G
Sbjct: 184 ATIFEYLIKDYNKDFGKYAE-YYTPHSIASIIARIMV-PEGT-------QNVTVYDPAAG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  +    + + +         I     + L        +   L   +  D        
Sbjct: 235 SGTLVLALAHEIGESNCTIYTQDISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQHL 294

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL--GRFGPGLPKI-- 331
            +Q + L K       F Y +SNPPF   +  ++D +      G++   RF  G+P I  
Sbjct: 295 NRQKNGLMK-------FDYIVSNPPFNVDFSDNRDTLA-----GDIYKERFWAGVPNIPN 342

Query: 332 --SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIE 388
              D   ++ M L + +      G +AA+V+ +  L    AG+G   +IR  +++  ++ 
Sbjct: 343 KKKDSMAIYQMFLQHIIFSMKENGCKAAVVVPTGFL---TAGTGIPKKIRERIVKERMLR 399

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDD 447
            +V++P+++F  T     +  L N K  E+     L++A+ L T ++ +GK +R +++ +
Sbjct: 400 GVVSMPSNIFATTGTNVSVVFLDNTKKYEQ---AILMDASKLGTKVKIDGKNQRTVLSPE 456

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
           +   I+  + + E+   FS ++DY     ++
Sbjct: 457 EIEDIIHTFNNFESKDDFSVVVDYEKIEQKK 487


>gi|160884785|ref|ZP_02065788.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483]
 gi|156109820|gb|EDO11565.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483]
          Length = 490

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 135/308 (43%), Gaps = 53/308 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++Y  L+  F  E  +   + + P +VV L T L+    D   K +      L DP  
Sbjct: 146 VGDLYNQLLYIFAEEAGKKINNVLAPTEVVSLITKLI----DGNRKNA-----CLCDPAS 196

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES------DP 268
           G+G  L +    +   G+          +GQE+    +A+    +++   +       D 
Sbjct: 197 GSGTLLIEVGKKMGIRGTD--------IYGQEVNWNLYALTKMNLMLNGFKGATFLWGDS 248

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            R   K +  G          K+F   +S PPF  KW  + +A +  ++     RF  G+
Sbjct: 249 LRS-PKLLDHGGL--------KKFDIVVSVPPFADKWASE-EAYDDFYR-----RFKYGI 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  S  +  ++ H+   L       G+A +V+    LF     + ES+IR  ++E +L+E
Sbjct: 294 PPKSQVTWAYISHILASLR----NDGQAVVVVPVGVLFR----NTESKIREQIIEYNLLE 345

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP++LF  T I+T + +    + E  R +   ++A   + S  N+G  +  ++D  
Sbjct: 346 AVIELPSNLFHGTAISTAILVF---RKERMRTQTLFVDARKGYIS--NKGLYK--LSDKV 398

Query: 449 RRQILDIY 456
             Q+ +IY
Sbjct: 399 LEQLPNIY 406


>gi|42528246|ref|NP_973344.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|41819516|gb|AAS13263.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|325474564|gb|EGC77750.1| type I restriction-modification system [Treponema denticola F0402]
          Length = 480

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 37/264 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++ + G +   GA  + TPR +++    ++           P +  T+ DP CGTG
Sbjct: 136 IYESILEKNGQDKKSGAGQYFTPRPLINAMVDVV----------QPKITETVADPACGTG 185

Query: 218 GFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +++   +D  S  +        G ++ P    +    + +  +  D     + 
Sbjct: 186 GFLLSAYDYMRKQSDEQSKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGVD-----TT 240

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I+   +L  +          L+NPPFG    +   +V+      +L      +   S+ 
Sbjct: 241 PIKCEDSLEHE--PEHLVDVILANPPFGA---RPAGSVDISTMRSDL------IVTTSNN 289

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + FL H+   L+     GGRA IVL  + LF    G+GE  +R+ LL++  +  I+ LP
Sbjct: 290 QLNFLQHMMVMLK----DGGRAGIVLPDNVLFAD--GAGEI-LRKKLLKDFNLHTILRLP 342

Query: 395 TDLFFRTNI-ATYLWILSNRKTEE 417
           T +F+   + A  L+      T+E
Sbjct: 343 TGIFYANGVKANVLFFEKGSPTQE 366


>gi|313678680|ref|YP_004056420.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
 gi|312950278|gb|ADR24873.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
          Length = 483

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 62/299 (20%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSE 169
            K+ FED      I+   K G L +   N    EL+ D + +  + ++IYE ++++    
Sbjct: 106 VKSAFED------ISNYMKDGTLLRQVINVID-ELNFDNIKEIHLFNDIYETILKK---- 154

Query: 170 VSEGAE-DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + EG   +F TPR +      +L           P + +T+ D  CGTGGFLT  +N V 
Sbjct: 155 IQEGGSGEFYTPRALTDFIAEIL----------DPKLGQTMADLACGTGGFLTSFLNRVN 204

Query: 229 DCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
           +    + +  I       +G E +   + + V  + +  ++ DP      N+  G++L  
Sbjct: 205 E--QKNTLEDIKKYSQSVYGIEKKGFPYLLAVINLFLHNVD-DP------NLLHGNSLEK 255

Query: 284 --KDLFTGKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             KD    ++F   + NPPFG   +K  +    K+ ++ E           +D  ML +M
Sbjct: 256 NVKDYSEDEKFDLIMMNPPFGGSEQKIIQSNFPKDLRSAE----------TADLFMLVIM 305

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF 398
           H   +L++    GG+AA++L    LF    G+G +  I++ L     +  I+ LP  +F
Sbjct: 306 H---RLKM----GGKAAVILPDGFLF----GTGAQKNIKKKLFSEFNVHTIIRLPKTVF 353


>gi|147679037|ref|YP_001213252.1| hypothetical protein PTH_2702 [Pelotomaculum thermopropionicum SI]
 gi|146275134|dbj|BAF60883.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 251

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 31/205 (15%)

Query: 112 KAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + IFE  DF++  A   +     LY + +  S   L    V   ++   YE+L+R+F   
Sbjct: 12  QGIFEQVDFNARAAGQPIIDNDRLYNLIQILSRHRLGLKDVEADILGRAYEYLLRKFAEG 71

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L  AL+L P        PG    +YDP CG+GG L  ++    D
Sbjct: 72  QGQSAGEFYTPSEVAWL-MALILRP-------RPG--DEIYDPACGSGGLLIKSVLACRD 121

Query: 230 C-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G+  +  P+ + +GQE+   T A+      I  LE++        I+ G T+++  FT
Sbjct: 122 AYGTDSQTAPVKI-YGQEINYTTFAMAKMNAFIHDLEAE--------IRLGDTMARPAFT 172

Query: 289 G-----KRFHYCLSNPPFGKKWEKD 308
                 + F    +NP     W +D
Sbjct: 173 NPDGSLRVFDKVTANP----MWNRD 193


>gi|329955592|ref|ZP_08296500.1| putative type I restriction-modification system, M subunit
           [Bacteroides clarus YIT 12056]
 gi|328525995|gb|EGF53019.1| putative type I restriction-modification system, M subunit
           [Bacteroides clarus YIT 12056]
          Length = 560

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 140/319 (43%), Gaps = 44/319 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S I+EHL++ F +       ++ TPR +  +   LL+  +  L     G+  T YDP+ 
Sbjct: 185 FSRIFEHLLKGFNNAGGGKYAEYYTPRAIAQVMARLLVGENTDL----RGV--TCYDPSA 238

Query: 215 GTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTG  L    + + +  C              Q++  ++  +    +++    +      
Sbjct: 239 GTGTLLMALAHQIGEERC----------TIFSQDISEKSSEMLRLNLILNNFAASL---- 284

Query: 273 SKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKN------GEL 321
             N+ QG+TL++          ++F + +SNPPF   + + +D +  +           +
Sbjct: 285 -PNVVQGNTLTEPSHKESNGVLRKFDFIVSNPPFKLDFPEYRDTLASDTIRFWAGVPNAV 343

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            +  P  PK++  +  F+ H+ N L+      G+AAIV+ +      ++G  E  I + +
Sbjct: 344 KKVDPMKPKMAIYT-CFIQHVLNSLKTT----GKAAIVIPTG-FITAKSGV-EKRILQRI 396

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           ++   +  ++++P+++F  T     +         +   KV LI+A+ L    +    ++
Sbjct: 397 VDERWVYGVISMPSNVFATTGTNVSVIFFDKSANHD---KVILIDASKLGEEYKEGNNQK 453

Query: 442 RIINDDQRRQILDIYVSRE 460
           R + D +  QI++ + ++E
Sbjct: 454 RRLRDFEIDQIVNTFQNKE 472


>gi|71275744|ref|ZP_00652029.1| N-6 DNA methylase [Xylella fastidiosa Dixon]
 gi|71163635|gb|EAO13352.1| N-6 DNA methylase [Xylella fastidiosa Dixon]
          Length = 188

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 7/110 (6%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           GRAA+VL +  +  G     E +   IR+W ++ DLI+ ++ LP +LF+ T  A  + +L
Sbjct: 45  GRAAVVLDTGAVTRGSGSKNEDKERSIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVL 104

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           + RK   R+ K+ L+NA+  +     +GK +  + ++  R +  +Y+  E
Sbjct: 105 NKRKPAARKDKIVLLNASRRY----KKGKPKNYLPEEDVRSLAALYLKGE 150


>gi|332829957|gb|EGK02585.1| hypothetical protein HMPREF9455_00835 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 478

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 48/262 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++      ++G  ++ TPR +  L T +            P +   + DP 
Sbjct: 149 IFGDIYESILQELRDAGNKG--EYYTPRAITQLMTQM----------TDPKLGEKILDPA 196

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLIRRLES 266
            GTGGFLT A+ H  D    H +  +           G EL+P  + + +  +++  ++ 
Sbjct: 197 AGTGGFLTAAIEHKRD----HYVKTVDNEATLQSTITGWELKPVAYVLGLTNLILHGIDI 252

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              + +    ++ +++ K      +    L+NPPFG       D VE            P
Sbjct: 253 PDYQYIDSLKKEYNSIDKK----DQVDVILANPPFGASI---ADGVETNF---------P 296

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
            + +  + + LF++ +   L+  P   GRAAIVL    +     G G +S IR  LL + 
Sbjct: 297 AMYRCRESADLFVILMLQMLK--PT--GRAAIVLPDGSI----TGEGVKSRIREKLLTDC 348

Query: 386 LIEAIVALPTDLFFRTNIATYL 407
            +  IV LP   FF   ++T L
Sbjct: 349 NLHTIVRLPQSTFFPATVSTNL 370


>gi|170079467|ref|YP_001736103.1| Type I N6 DNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887136|gb|ACB00848.1| Type I N6 DNA Methyltransferase [Synechococcus sp. PCC 7002]
          Length = 482

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 44/259 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I   G+    G E + TPR ++     ++           P +  T+YD  C
Sbjct: 155 LSDLYETRINNMGNAGRNGGE-YYTPRPLIRAMIRVI----------KPQLGETIYDGAC 203

Query: 215 GTGGFLTDA---MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+ GFL +A   +  +    +  +       +GQE +   + + V  +++  +E      
Sbjct: 204 GSAGFLCEAYEFLRPLVKSAAELERLQTATLYGQEKKGLAYIIGVMNLILHGVE------ 257

Query: 272 LSKNIQQGSTLSKDL--FTGKRFH-YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            + NI Q +TL++++  F  K  H   L+NPPFG K E+++         GE        
Sbjct: 258 -APNIIQMNTLTENIQGFQEKDRHDVILANPPFGGK-EREEIKQNFTIATGET------- 308

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                 + LFL H   +L++    GGRAA+V+ ++ L N  A +    +R+ L  +  + 
Sbjct: 309 ------AFLFLQHFIKRLKV----GGRAAVVIKNTFLSN--ADNASRALRQELTSSCNLH 356

Query: 389 AIVALPTDLFFRTNIATYL 407
            ++  P   F    + T +
Sbjct: 357 TVLDCPAKTFLGAGVKTVV 375


>gi|317181780|dbj|BAJ59564.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 543

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 128/296 (43%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + S+      ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNSDKGGKYAEYYTPLSIASIIAKLLIN--------EPTQNVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTNS-------CTLYAQDISQKSLKMLKLNLILNNLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----SDNGKGAIVVPTGFI---SAKSGIENKIVRHLVDEKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + ++  +KT     +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSVIFFKKT-PSANEVVLIDASKLGEEYTENKNKKTRLRESD 455


>gi|146319106|ref|YP_001198818.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 05ZYH33]
 gi|145689912|gb|ABP90418.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 05ZYH33]
          Length = 487

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 65/279 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   S  + G  +F TPR        +L          +P +  T+ D  CG
Sbjct: 148 NDIYEKILKDIQSAGNSG--EFYTPRAATDFIAEML----------NPQLGETMADLACG 195

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLIRRLESDPRR 270
           TGGFLT  +NH+   G   K    +  + Q     E +   H + V  + +  ++ DP+ 
Sbjct: 196 TGGFLTSTLNHL---GQQRKTSEDVQKYTQAVFGIEKKAFPHLLAVTNLFLHEID-DPK- 250

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                I  G+TL K   D    ++F   + NPPFG                 EL      
Sbjct: 251 -----IIHGNTLEKNVRDYTEDEKFDIIMMNPPFG---------------GSELETIKNN 290

Query: 328 LP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLE 383
            P   + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L+E
Sbjct: 291 FPAELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVE 342

Query: 384 NDLIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
              +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 343 EFNLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|313675493|ref|YP_004053489.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126]
 gi|312942191|gb|ADR21381.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126]
          Length = 524

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 42/249 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  S    G   F TPR ++ +   ++           P    T+ DP+CGT
Sbjct: 150 DLYEYMLSKVASAGQNGQ--FRTPRHIIRMMVDMV----------EPNETDTICDPSCGT 197

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++ D             H       G E +     +    + +  +E +P+
Sbjct: 198 AGFLVAAGEYLHDMHPDWFNDKKFREHYNKEMFTGMEFDSTMLRIGAMNLQLHGIE-NPQ 256

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                ++ +G++  K+     +F   L+NPPF  K   D D V+    N         + 
Sbjct: 257 LIGVDSLSEGNSNIKE-----KFSLVLANPPF--KGSLDYDGVDDALLN---------IV 300

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L+     GGR A+++    LF   +     EIR+ ++E + ++A
Sbjct: 301 KTKKTELLFLALMLRTLKT----GGRCAVIIPDGVLFG--SSKAHKEIRKEIIEKNKLDA 354

Query: 390 IVALPTDLF 398
           ++++P+ +F
Sbjct: 355 VISMPSGVF 363


>gi|295398847|ref|ZP_06808839.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
 gi|294972911|gb|EFG48746.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
          Length = 360

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 29/209 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + + YE+LI +F  +  + A +F TP  V  L T + L    A  ++  G+  T+YDPT
Sbjct: 174 ALGDAYEYLIGQFAEDSGKKAGEFYTPSQVSTLMTRIAL----ANKEDKKGL--TVYDPT 227

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +  +  +       +   GQEL   T+ +    M +  +  DP   + 
Sbjct: 228 MGSGSLLLNASKYSNEAST-------IRYFGQELNTSTYNLARMNMFLHNV--DPENQIL 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +N   G TL  D    +   F   L NPP+  KW   K  ++    +     +G  LP  
Sbjct: 279 RN---GDTLDADWPQDEPTNFDAVLMNPPYSAKWSAAKGFLD----DPRFASYGV-LPPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           S     FL+H    L+      G+ AIVL
Sbjct: 331 SKADFAFLLHGYFHLK----NDGKMAIVL 355


>gi|270668424|ref|ZP_06222532.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270684879|ref|ZP_06222842.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270316193|gb|EFA28164.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270316685|gb|EFA28474.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 117

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%), Gaps = 11/96 (11%)

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I     ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI
Sbjct: 27  GEYILYETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEI 78

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P R L ++  ++  +E Q   L+ E+
Sbjct: 79  SFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEI 114


>gi|270719677|ref|ZP_06223339.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270315394|gb|EFA27667.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 116

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 58/96 (60%), Gaps = 11/96 (11%)

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I     ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI
Sbjct: 26  GEYILYETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEI 77

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY+++P R L ++  ++  +E Q   L+ E+
Sbjct: 78  SFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEI 113


>gi|254426343|ref|ZP_05040059.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
 gi|196187757|gb|EDX82723.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
          Length = 494

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 51/266 (19%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D +P  DR    ++YE+++ +  +  + G   F TPR ++ L  AL+          +PG
Sbjct: 134 DQIPMEDRDTKGDLYEYMLSKLSTAGTNG--QFRTPRHIIKLMVALM----------APG 181

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHA 253
               + DP CGTGGFL  A  +V D         +  P           HG + +     
Sbjct: 182 PNEIICDPACGTGGFLIGAAEYVRDLKDGEGNDVLNAPGNLAHFNDGMFHGFDFDATMLR 241

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           +    +++  +E          I+   +LS+D     + F   L+NPPF       K +V
Sbjct: 242 IGSMNLMLHGIE-------QPAIEARDSLSEDHAGVEEAFTMILANPPF-------KGSV 287

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           EK     +L +      K     M   + L  K       GGRAA+++    LF   +  
Sbjct: 288 EKSTIAKDLAK-AISTKKTELLFMALFLRLLKK-------GGRAAVIVPDGVLFG--SSK 337

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF 398
               +R+ L+E   ++ ++++P+ +F
Sbjct: 338 AHKGLRKLLVEAHKLDGVISMPSGVF 363


>gi|262375870|ref|ZP_06069101.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145]
 gi|262308964|gb|EEY90096.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145]
          Length = 498

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 50/271 (18%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+++ +  S    G   F TPR ++ +   L+           P    T+ DP CGT
Sbjct: 150 DIYEYMLGKIASAGQNG--QFRTPRHIIKMIVELM----------QPKPTDTICDPACGT 197

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A  ++     HH       P            G + +     +    M++  +E
Sbjct: 198 AGFLVAASEYL---NEHHSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVE 254

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +PR +   ++ +  +         +F   L+NPPF    + +  A     KN +     
Sbjct: 255 -NPRIENRDSLSEAHS-----HIESQFSLILANPPFAGSLDYESCA-----KNIQ----- 298

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LFL      L+     GGRAAI++    LF   +     ++R+ ++E  
Sbjct: 299 -AIVKTKKTELLFLALFLRILK----TGGRAAIIVPDGVLFG--SSKAHKDLRQKIVEEQ 351

Query: 386 LIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
            +EAI+++P+ +F     ++T + I +  +T
Sbjct: 352 KLEAIISMPSGVFKPYAGVSTAILIFTKTET 382


>gi|238809498|dbj|BAH69288.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 503

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 44/247 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  + G  +F TPR V      ++          +P +   + D  CGTG
Sbjct: 165 IYETILKSLQSAGNAG--EFYTPRAVTDFMVKMI----------NPKLGEKIADFACGTG 212

Query: 218 GFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPR----RD 271
           GFLT ++ H+ D     +   +     +G E +P  + +C+  MLI  ++ +P+      
Sbjct: 213 GFLTSSLKHLEDQKKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHDVD-EPKIFHDNS 271

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           L K +Q       D     +F   L NPP+G     +K+AV+            P   + 
Sbjct: 272 LEKRVQ-------DYTEADKFDIILMNPPYGG---SEKEAVKNNF---------PADLRS 312

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF+  +  +L+      GR A++L    LF   A + +  I+  LL+   +  I+
Sbjct: 313 SETADLFMNVIMYRLK----KKGRCAVILPDGFLFG--ADNAKVAIKTKLLKEFNLHTII 366

Query: 392 ALPTDLF 398
            +P  +F
Sbjct: 367 RMPHSVF 373


>gi|146321310|ref|YP_001201021.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 98HAH33]
 gi|145692116|gb|ABP92621.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 98HAH33]
          Length = 359

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 119/278 (42%), Gaps = 61/278 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            ++IYE +++   S  + G  +F TPR        +L          +P +  T+ D  C
Sbjct: 19  FNDIYEKILKDIQSAGNSG--EFYTPRAATDFIAEML----------NPQLGETMADLAC 66

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLIRRLESDPR 269
           GTGGFLT  +NH+   G   K    +  + Q     E +   H + V  + +  ++ DP+
Sbjct: 67  GTGGFLTSTLNHL---GQQRKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-DPK 122

Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFG 325
                 I  G+TL K   D    ++F   + NPPF G + E  K+               
Sbjct: 123 ------IIHGNTLEKNVRDYTEDEKFDIIMMNPPFGGSELETIKNNF------------- 163

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
           P   + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L+E 
Sbjct: 164 PAELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVEE 215

Query: 385 DLIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
             +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 216 FNLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 250


>gi|254457532|ref|ZP_05070960.1| type I restriction-modification system, M subunit
           [Campylobacterales bacterium GD 1]
 gi|207086324|gb|EDZ63608.1| type I restriction-modification system, M subunit
           [Campylobacterales bacterium GD 1]
          Length = 484

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 47/261 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           MS++YE  I+  G+    G E + TPR ++     ++          +P +   +YD   
Sbjct: 157 MSHLYEDKIKNMGNAGRNGGE-YYTPRALIKTIVKVV----------APQIGDKIYDGAV 205

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A  ++        +  +I      +G+E +   + +    M++  +E+    
Sbjct: 206 GSAGFLVEAFEYLKHSKNLTTADTEILQKKTFYGKEKKSLAYIIGTMNMILHGVEA---- 261

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL++   D+    R+   L+NPPFG K               E       
Sbjct: 262 ---PNIIHTNTLAENLADIQDKDRYDVILANPPFGGK---------------ERAEVQQN 303

Query: 328 LP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            P K  + + LF+ H    L+     GG+A IV+ ++ L N    S    +R+ LLEN  
Sbjct: 304 FPIKTGETASLFIQHFVKILK----AGGKAGIVIKNTFLSNTDNAS--VSLRKLLLENCN 357

Query: 387 IEAIVALPTDLFFRTNIATYL 407
           +  ++ LP   F    + T +
Sbjct: 358 LHTVLDLPGGTFTGAGVKTVV 378


>gi|319777321|ref|YP_004136972.1| type i restriction-modification system, m subunit [Mycoplasma
           fermentans M64]
 gi|318038396|gb|ADV34595.1| Type I restriction-modification system, M subunit [Mycoplasma
           fermentans M64]
          Length = 500

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 44/247 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  + G  +F TPR V      ++          +P +   + D  CGTG
Sbjct: 162 IYETILKSLQSAGNAG--EFYTPRAVTDFMVKMI----------NPKLGEKIADFACGTG 209

Query: 218 GFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPR----RD 271
           GFLT ++ H+ D     +   +     +G E +P  + +C+  MLI  ++ +P+      
Sbjct: 210 GFLTSSLKHLEDQKKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHDVD-EPKIFHDNS 268

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           L K +Q       D     +F   L NPP+G     +K+AV+            P   + 
Sbjct: 269 LEKRVQ-------DYTEADKFDIILMNPPYGG---SEKEAVKNNF---------PADLRS 309

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF+  +  +L+      GR A++L    LF   A + +  I+  LL+   +  I+
Sbjct: 310 SETADLFMNVIMYRLK----KKGRCAVILPDGFLFG--ADNAKVAIKTKLLKEFNLHTII 363

Query: 392 ALPTDLF 398
            +P  +F
Sbjct: 364 RMPHSVF 370


>gi|315506709|ref|YP_004085596.1| n-6 DNA methylase [Micromonospora sp. L5]
 gi|315413328|gb|ADU11445.1| N-6 DNA methylase [Micromonospora sp. L5]
          Length = 898

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 58/295 (19%)

Query: 173 GAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           G + F TPR VV L   +L   P+D           ++ DP CG GG L  A ++V    
Sbjct: 129 GKQHFGTPRPVVTLMVEMLAPSPED-----------SVADPWCGPGGLLAAASDYVRRTA 177

Query: 232 SHHKIPPILVPHGQELEPETHAVC-VAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTG 289
             +   P    +G E      A+  +AGM +          L   + +     +D L   
Sbjct: 178 GEN---PRQKFYGAE---RNQALMRLAGMNL----------LLHGVGEAELTQRDPLEAP 221

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            RF   ++NPPFG +  +D ++V              GL + +   +L L+  +  L   
Sbjct: 222 GRFSVVMTNPPFGGR--RDIESVPAGLA---------GLVRTTKTELLLLVAASRLL--- 267

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
            + GG+AA+++  S LF   + S   E+RR L+E   ++A+V LP   F     ++  L 
Sbjct: 268 -DAGGKAAVIVPQSVLFG--SSSAHIEVRRLLVEEHRLDAVVILPPGTFLPYAGLSAALL 324

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           + +  K + R G V   +A         +G +R  ++DD    +L ++  R  G+
Sbjct: 325 LFT--KADSRTGDVWFYDAA-------GDG-RRDPLSDDHVADVLKLWERRAGGE 369


>gi|312902303|ref|ZP_07761510.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
 gi|310634274|gb|EFQ17557.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
          Length = 435

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 126/307 (41%), Gaps = 48/307 (15%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G +   TP  ++ +A+ +L            G  R+  D   GTGG          D  
Sbjct: 62  KGKKQDFTPDGIIRVASGVL------------GPTRSNADICAGTGGLTIKRYAENPDAQ 109

Query: 232 ------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                 S   +P +L           +AV + G  + R E      L+K+ +  S    D
Sbjct: 110 FYCEEFSDRALPFLLFNLAIR---NINAVVLHGDSLSR-EFKAIYKLTKSTEFSSIEIVD 165

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +    + NPP+   W   K+ +E+E        F    PK S     FL+   ++
Sbjct: 166 EVPATKSETVIMNPPYSLPWNPLKEYLEQER----FSDFDVLAPK-SKADYAFLLQGIHQ 220

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T
Sbjct: 221 LK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPT 273

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR---IINDDQRRQILDIYVSREN- 461
            L +L   +          +N   L+     E KK +   ++ D+   +IL+++ SR+  
Sbjct: 274 VLLVLKKNR----------LNKDILFIDASKEFKKEKAWNVLEDEHVAKILEVFQSRKAV 323

Query: 462 GKFSRML 468
            KFS ++
Sbjct: 324 DKFSSIV 330


>gi|307155044|ref|YP_003890428.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822]
 gi|306985272|gb|ADN17153.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7822]
          Length = 606

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 126/307 (41%), Gaps = 40/307 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-R 153
           + L +Y+ S   N     +D     F     R+    LL  +    + I  H D+  +  
Sbjct: 123 DGLFAYLRSLQSNTGRERQDLIREVFRDVNNRMISGALLRDVVNKINDI--HFDSSEEVN 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++SN YE +++       +  E F TPR VV     ++           P +  T++DP 
Sbjct: 181 ILSNFYESMLKEMRDAAGDSGE-FYTPRPVVRFMVKVI----------DPKLGETIHDPA 229

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CGT GFL +   ++   C +           G E +P  + +    +L+  +E     D+
Sbjct: 230 CGTAGFLIEVYEYLKGQCKADEWAMLQASLSGVEAKPLPYMLAQMNLLLHGVEYP---DV 286

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                 G  L+ +L    +    L+NPPFG + E      EK   N     F P + + S
Sbjct: 287 EHRNSLGQPLT-NLGQKDQVDIILTNPPFGGEEE------EKIKNN-----FPPKM-QTS 333

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIV 391
           + ++LF   +   L+  P   GR  IV+ +  LF    G G  ++++  LL    +  IV
Sbjct: 334 ETALLFFQLIMRLLKKHPK-PGRGGIVVPNGVLF----GDGICAKVKEQLLTQFNLHTIV 388

Query: 392 ALPTDLF 398
            LP  +F
Sbjct: 389 RLPNGVF 395


>gi|217031669|ref|ZP_03437174.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128]
 gi|298736617|ref|YP_003729143.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|216946869|gb|EEC25465.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128]
 gi|298355807|emb|CBI66679.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 543

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 36/296 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL+          P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLV--------SEPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 INPYHSKE--CHGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    +  G+ AI++ +  +    A SG E++I R L+   L+  +V 
Sbjct: 350 IYTLFFQHCLNML----SNKGKGAIIVPTGFI---SAKSGVENKIIRHLVNERLVYGVVC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDD 447
           +P+ +F   N  T + I+  +KT   + +V LI+A+ L      N+ KK R+   D
Sbjct: 403 MPSQVF--ANTGTNVSIIFFQKTPSAK-EVILIDASKLGEEYTENKNKKTRLRTSD 455


>gi|297379660|gb|ADI34547.1| type I restriction enzyme M protein [Helicobacter pylori v225d]
          Length = 543

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 36/292 (12%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL++         P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPSSIARIIAKLLVN--------EPTKSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    +  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKE--CKGKMDYIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVA 392
              LF  H  N L    N   + AIV+ +  +    A SG E++I R L++  L+  ++ 
Sbjct: 350 IYTLFFQHCLNML----NDKCKGAIVVPTGFI---SAKSGIENKIVRHLVDEKLVYGVIC 402

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRI 443
           +P+ +F   N  T + I+  +K      +V LI+A+ L      N+ KK R+
Sbjct: 403 MPSQVF--ANTGTNVSIIFFKKM-PSVNEVVLIDASKLGEEYTENKNKKTRL 451


>gi|78773878|gb|ABB51226.1| type I RM system M subunit [Arthrospira platensis]
          Length = 504

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 44/259 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +   +YD  C
Sbjct: 157 LSHLYETKIKNMGNAGRNGGE-YYTPRPLIRAMIRVV----------KPKIGDRIYDGAC 205

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+ GFL ++ +++          +        G+E +   + + +  M++  +++     
Sbjct: 206 GSAGFLCESYDYLRQDNLTTQQLRQLQTQTLFGKEKKSLAYVIAIMNMILHGIDA----- 260

Query: 272 LSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              NI   +TL++   D+    RF   L+NPPFG K  K            E+ +  P  
Sbjct: 261 --PNIIHTNTLTENLSDIQDKDRFDVILANPPFGGKERK------------EVQQNFP-- 304

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K  + + LFL H    L++    GGRAAIV+ ++ L N  A +    +R+ LL +  + 
Sbjct: 305 IKTGETAFLFLQHFIKILKV----GGRAAIVIKNTFLSN--ADNAARALRQELLSSCNLH 358

Query: 389 AIVALPTDLFFRTNIATYL 407
           +I+  P   F    + T +
Sbjct: 359 SILDCPGGTFIGAGVKTVV 377


>gi|139438844|ref|ZP_01772304.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC
           25986]
 gi|133775555|gb|EBA39375.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC
           25986]
          Length = 492

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 47/269 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  + G  +F TPR V       L          +P +  T+ D  CGTG
Sbjct: 151 IYETILKDLQSAGNAG--EFYTPRAVTDFMAQAL----------APKLGETVADFACGTG 198

Query: 218 GFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFLT A+  + D          L     +G E +   + +CV  ML+  ++       + 
Sbjct: 199 GFLTSALK-ILDSQVQTPADRELYARSVYGIEKKQLPYLLCVTNMLLHDID-------NP 250

Query: 275 NIQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +   ++L KD+   K     +F   L NPP+G              ++  +    P   
Sbjct: 251 EVFHDNSLEKDVREWKHKPDGQFDVVLMNPPYGGS------------ESASVQNNFPVAL 298

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + S+ + LFL  +  +L+     GGRAA+++    LF     S ++EI+R LLE+  +  
Sbjct: 299 RSSETADLFLGLILYRLK----RGGRAAVIIPDGFLFG--QDSAKTEIKRRLLEDMNLHT 352

Query: 390 IVALPTDLFF-RTNIATYLWILSNRKTEE 417
           ++ LP  +F   T+I T +    N    E
Sbjct: 353 VLRLPQSVFAPYTSITTNVLFFDNTGASE 381


>gi|331266253|ref|YP_004325883.1| type I restriction-modification system, M subunit, putative
           [Streptococcus oralis Uo5]
 gi|326682925|emb|CBZ00542.1| type I restriction-modification system, M subunit, putative
           [Streptococcus oralis Uo5]
          Length = 482

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 56/314 (17%)

Query: 104 IASFSDNAKAIFEDFDFS----STIARLEKAGLLYKICKNF-------SGIELHPDTVPD 152
           I  F  N K   +D  FS      I ++ K   L K+           S I+   DT   
Sbjct: 77  IFPFIKNLKGDTDDTAFSRYMREAIFQINKPATLQKVISILDEFPTRGSDIDFDSDTQGV 136

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP
Sbjct: 137 NDIGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDP 184

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLE 265
             G+ GFL  A  ++       +  P  +        HG + +     +    M++  +E
Sbjct: 185 AMGSAGFLVSASRYLKRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMMLHGVE 244

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  +  I    +LS+D     ++   L+NPPF    + D  +      N  L    
Sbjct: 245 -------NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTS------NDLLATV- 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLEN 384
               K     +LFL      L+     GGRAA+++    LF + +A  G   IR+ ++EN
Sbjct: 291 ----KTKKTELLFLALFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG---IRQEIVEN 339

Query: 385 DLIEAIVALPTDLF 398
             ++A++++P+ +F
Sbjct: 340 HKLDAVISMPSGVF 353


>gi|256375106|ref|YP_003098766.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919409|gb|ACU34920.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 677

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 35/204 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP CGTG  L  A+          +  P + P GQEL+P    V +A +     E+ 
Sbjct: 159 TVFDPACGTGALLRAAV----------RSEPGIRPVGQELDPSLAQVAIARLAFAAGEA- 207

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
                  +++ G +L  D F        +SNPPF  + W  ++ A ++        R+  
Sbjct: 208 -------SVRSGDSLRNDAFPELVADVVVSNPPFNIRNWGAEELAYDR--------RWVY 252

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   +  + ++ H    L   P G    A+VL    + + R+G     IR  LL +  
Sbjct: 253 GVPPKGESELAWVQHCLAHLR--PGG---HAVVLMPPAVASRRSG---RPIRAELLRSGT 304

Query: 387 IEAIVALPTDLFFRTNIATYLWIL 410
           + A+VALP       ++   +W+L
Sbjct: 305 LRAVVALPPGAAAPLHVGLQIWVL 328


>gi|227506257|ref|ZP_03936306.1| type I site-specific deoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227197158|gb|EEI77206.1| type I site-specific deoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 532

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 49/252 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  + G   F TP  ++ L  AL+           P   + + DP CGT
Sbjct: 151 DLYEYMLDKLSTSGTNGQ--FRTPSHIIELIVALM----------EPTPQQRIIDPACGT 198

Query: 217 GGFLTDAMNHVADCGSHHK-------IPPILVPHGQ---ELEPETHAVCVAGMLIRRLES 266
            GFL  A + +A    HH+               G    + +     +    M +   E 
Sbjct: 199 AGFLVAANDWIA---LHHREDLFNKETRTTFTDEGLTGFDFDKTMVRIAAMNMFMHGFE- 254

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           DP      NI    +L K   T + F   L+NPPF      DKDA++            P
Sbjct: 255 DP------NISHHDSLQKLPTTFEDFDLVLANPPFAGSL--DKDAID------------P 294

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L  ++      ++ +   L+L    GGRAA+++    LF   +      +R+ L+E+  
Sbjct: 295 KLKSVTTAKKTEILFVHRFLQL-LKPGGRAAVIVPEGVLFG--STKAHKALRKTLVEDQR 351

Query: 387 IEAIVALPTDLF 398
           ++A++ LP+ +F
Sbjct: 352 LDAVIKLPSGVF 363


>gi|313159760|gb|EFR59117.1| N-6 DNA Methylase [Alistipes sp. HGB5]
          Length = 502

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 51/315 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSE 169
           AK+I ++  F+     ++   LL ++    + IE   D   DR    +IYE +++   S 
Sbjct: 105 AKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF--DDADDRHTFGDIYEGILKDLQSA 161

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            + G  +F TPR +      +L           P +  T  D T GTGGFLT A+N+V+ 
Sbjct: 162 GNAG--EFYTPRALTDFIVMML----------DPKLGETFGDFTSGTGGFLTSALNYVSK 209

Query: 230 CGSH----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             S      K+   +V  GQE +P  + + +  +L+  +E       + NI    +L  +
Sbjct: 210 SVSSAEDGEKLQNAVV--GQEWKPLPYLLSITNLLLHDIE-------APNIANCDSLGTN 260

Query: 286 LFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           +   K   +      NPP+G   E   D+V+            P   + S+ + LF+  +
Sbjct: 261 ITDFKESDKVDVIGMNPPYGGSTE---DSVKSNF---------PMQYRSSETADLFIALI 308

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RT 401
             +L+     GGR  +++    LF G  G+ +  ++  LL    +  I+ LP  +F   T
Sbjct: 309 MYRLK----AGGRCGVIIPDGFLF-GTDGA-KLALKENLLRKFNLHTIIRLPGSIFSPYT 362

Query: 402 NIATYLWILSNRKTE 416
           +IAT +   +N + E
Sbjct: 363 SIATNILFFNNEEAE 377


>gi|253755915|ref|YP_003029055.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
 gi|251818379|emb|CAZ56207.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
          Length = 487

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 118/281 (41%), Gaps = 69/281 (24%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   S  + G  +F TPR        +L          +P +  T+ D  CG
Sbjct: 148 NDIYEKILKDIQSAGNSG--EFYTPRAATDFIAEML----------NPQLGETMADLACG 195

Query: 216 TGGFLTDAMNHVA-------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           TGGFLT  +NH++       D   +++        G E +   H + V  + +  ++ DP
Sbjct: 196 TGGFLTSTLNHLSQQRKTSEDVQKYNQ-----AVFGIEKKAFPHLLAVTNLFLHEID-DP 249

Query: 269 RRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +      I  G+TL K   D    ++F   + NPPFG                 EL    
Sbjct: 250 K------IIHGNTLEKNVRDYTEDEKFDIIMMNPPFG---------------GSELETIK 288

Query: 326 PGLP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
              P   + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L
Sbjct: 289 NNFPAELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKL 340

Query: 382 LENDLIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +E   +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 341 VEEFNLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|56418878|ref|YP_146196.1| type I restriction modification system M subunit [Geobacillus
           kaustophilus HTA426]
 gi|56378720|dbj|BAD74628.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Geobacillus kaustophilus
           HTA426]
          Length = 484

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 132/309 (42%), Gaps = 50/309 (16%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMS 156
           N +  +I +   N ++ +  +     I  +    +L KI     GI+  P  + DR    
Sbjct: 89  NEVFPFIKNLHGNRESAYAKY-MGDAIFMIPTPQMLVKIV---DGIDRIP--MKDRDTKG 142

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +  + G   F TPR ++H+   L+        K +P  I  + DP  G+
Sbjct: 143 DLYEYLLSKIATAGTNGQ--FRTPRHIIHMMVELM--------KPTPEDI--IVDPAAGS 190

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++    S   +   L  H       G +++     +    M++  +E+   
Sbjct: 191 AGFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMDRTMLRIGAMNMMLHGIEN--- 247

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                NI+   +LS+      ++   L+NPPF  K   D DAV  +            L 
Sbjct: 248 ----PNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLDYDAVSND------------LL 289

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K+       L+ LA  L +   GG R A ++    LF   +     +IR+ ++EN  +EA
Sbjct: 290 KVVKTKKTELLFLALFLRILKTGG-RCACIVPDGVLFG--SSKAHKDIRKEIVENHKLEA 346

Query: 390 IVALPTDLF 398
           I+++P+ +F
Sbjct: 347 IISMPSGVF 355


>gi|218667350|ref|YP_002426004.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519563|gb|ACK80149.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 484

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 60/302 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS    +++    L +I +   G+     T     +S++YE  I+  G+    G E + T
Sbjct: 123 FSEIKNKIQSGYNLREIVEIIDGLRFRSQT-EKHELSHLYEAKIKNMGNAGRNGGE-YYT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR ++     ++          +P +   +YD   G+ GFL +A +++       K  P 
Sbjct: 181 PRPLIRAIVQVV----------APKVGEKIYDGAVGSAGFLCEAFDYL-------KAQPG 223

Query: 240 LVP-----------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           L             +G+E +   + + +  M++  ++       + NI   +TL+++L  
Sbjct: 224 LTTGDMQTLQERTFYGKEKKSLAYVIAIMNMILHGID-------APNIVHTNTLAENLMD 276

Query: 289 GK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +   R    L+NPPFG K  K            E+ +  P   K  + + LFL H    
Sbjct: 277 IQPKDRVDVVLANPPFGGKERK------------EVQQNFP--IKTGETAFLFLQHFIRM 322

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+     GGRA +V+ ++ L N    S    +R+ LLE+  +  ++ LP   F    + T
Sbjct: 323 LK----AGGRAGVVIKNTFLSNTDNAS--VSLRKLLLEDCNLHTVLDLPGGTFQGAGVKT 376

Query: 406 YL 407
            +
Sbjct: 377 VV 378


>gi|325680372|ref|ZP_08159929.1| hypothetical protein CUS_4297 [Ruminococcus albus 8]
 gi|324107932|gb|EGC02191.1| hypothetical protein CUS_4297 [Ruminococcus albus 8]
          Length = 216

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 10/108 (9%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE---K 624
           D  A+   D  G  I D    + E V + ESI+DY  REV PHVPDA   + F +E   K
Sbjct: 111 DKSAEIQRDKKGNIIYDKETKDTEIVKFDESIEDYMAREVLPHVPDA---QWFFEEDLSK 167

Query: 625 DKEIGRVGYEINFNRFFYQYQ---PSRKLQDIDAEL-KGVEAQIATLL 668
              + R G EI F R+FY+YQ   PS +L+    EL K V  +IA L 
Sbjct: 168 KSPVIRTGAEIPFTRYFYKYQQPKPSEELEQRFMELEKSVSERIARLF 215


>gi|194364814|ref|YP_002027424.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3]
 gi|194347618|gb|ACF50741.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3]
          Length = 527

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 58/270 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE+L+ +  +    G   F TPR ++     ++          +P     + DP+
Sbjct: 150 VKGDIYEYLLSKLTTAGING--QFRTPRHIIDAMVEVV----------APQPYEVVCDPS 197

Query: 214 CGTGGFLTDAM-----NHVADCGS-----------------HHKIPPILVPHGQELEPET 251
           CGT GFL   M      H ++ G+                 + K     +  G + +   
Sbjct: 198 CGTAGFLARTMEYLNRTHSSEAGTLTDEDGNSSYTGDLLDAYRKHINSQMFWGFDFDTTM 257

Query: 252 HAVCVAGMLIRRLES---DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             V    ML+  +     + +  L+K+I++     ++ F    F   L+NPPF       
Sbjct: 258 LRVSSMNMLLHGVSGANINYQDTLNKSIKEHFPRQEENF----FDVVLANPPF------- 306

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K ++++ + N ++      L       +LF+ H+   L+L    GGRAA+++    LF  
Sbjct: 307 KGSLDEANVNPDV----LALVATKKTELLFVAHILRSLKL----GGRAAVIVPDGVLFG- 357

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            +     ++RR LLEN+ +E +++LP+ +F
Sbjct: 358 -SSKAHQQLRRELLENNQLEGVISLPSGVF 386


>gi|219851547|ref|YP_002465979.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
 gi|219545806|gb|ACL16256.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
          Length = 478

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 56/281 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V    +E L+ +  SE  +GA  + TPR V+  +    + PD     +      T+ DP 
Sbjct: 116 VKGEAFEGLLEKAASEGKKGAGQYFTPRIVIQ-SIVRCMKPDPRKRSD-----LTICDPA 169

Query: 214 CGTGGFLTDAMNHVAD---CGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  +   + +    G+  +   + V      GQEL      + +  + +  +E 
Sbjct: 170 CGTGGFLVCSFEWLLEQTKGGALDREVALRVKKGTYFGQELVARPRRLALMNLFLHNVEP 229

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   +I+ G ++ ++   G+RF   L+NPPFG K      A ++E           
Sbjct: 230 --------SIKFGDSIYENP-DGRRFDVVLTNPPFGTKGA--NQAPDREDFT-------- 270

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+  + F+ H+   L+     GGRAA+V+  + LF   AG    E+ + L+E+  
Sbjct: 271 --ISTSNKQLNFVQHVMTILK----PGGRAAVVVPDNVLFADAAG----EVFKVLMEDCN 320

Query: 387 IEAIVALPTDLF------FRTNIATY--------LWILSNR 413
           +  I+ LP   F       +TN+  +        LW+  +R
Sbjct: 321 LHTILRLPNGTFTPYSPGTKTNVLFFTKGFPTETLWVYDDR 361


>gi|26554276|ref|NP_758210.1| type I restriction-modification system M subunit [Mycoplasma
           penetrans HF-2]
 gi|26454285|dbj|BAC44614.1| type I restriction-modification system M subunit [Mycoplasma
           penetrans HF-2]
          Length = 490

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 46/268 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  + G  +F TPR +      ++           P +   + D  CGTG
Sbjct: 150 IYETILKSLQSAGNAG--EFYTPRALTDFIVKMI----------DPKLGERVADFACGTG 197

Query: 218 GFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR----RD 271
           GFLT A+NH+      +   +      +G E +P  + +C+  +L+  ++ +P+      
Sbjct: 198 GFLTSALNHLEKNSKTTEDNVMYNNSIYGIEKKPLPYLLCITNVLLHDVD-EPKIFHTNS 256

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           L KN+       +D     +F   L NPP+G     +K+A++            P   + 
Sbjct: 257 LEKNV-------RDYKESDKFEIILMNPPYGG---SEKEAIKNNF---------PSTLRS 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF++ +  +L+      GR A ++    LF+    + +  I+  LL    +  ++
Sbjct: 298 SETADLFIILMMYRLK----KNGRCAAIIPDGFLFD--TSNAKVAIKEKLLNEFNLHTVI 351

Query: 392 ALPTDLFF-RTNIATYLWILSNRK-TEE 417
            LP  +F   T I T +    N K TEE
Sbjct: 352 RLPHSVFSPYTTINTNILFFENTKPTEE 379


>gi|158522106|ref|YP_001529976.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510932|gb|ABW67899.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 481

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 61/287 (21%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P  V    +E L+ +  +E  +GA  + TPR ++  +   ++ PD    K+      T+
Sbjct: 124 MPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQ-SIVTVMRPDPRKQKDF-----TI 177

Query: 210 YDPTCGTGGFLTDA---MNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRR 263
            DP CGT GFL  A   +  V+      K    +      GQEL P    + +  + +  
Sbjct: 178 CDPACGTAGFLMVAYEWLMAVSKGALDRKEVARIKKQTYFGQELVPRPRRLALMNLFLHG 237

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGE 320
           LE  P+  L  +I +          G+R+   L+NPPFG K       +D       N +
Sbjct: 238 LE--PQIYLGDSIYEPD-------RGERYDCILTNPPFGTKGANQAPVRDDFTVSTSNKQ 288

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L                F+ H+   L+     GGRAA+VL  + LF   AG    E+  +
Sbjct: 289 LN---------------FIQHVVTILK----PGGRAAMVLPDNVLFADAAG----EVIGY 325

Query: 381 LLENDLIEAIVALPTD-------------LFFRTNIAT-YLWILSNR 413
           L+E+  +  ++ LP               +FF+  + T  +WI   R
Sbjct: 326 LMEDCNVHTLLRLPNGTFSPYSQGVKANVIFFQKGVKTENIWIYDGR 372


>gi|220932854|ref|YP_002509762.1| N-6 DNA methylase [Halothermothrix orenii H 168]
 gi|219994164|gb|ACL70767.1| N-6 DNA methylase [Halothermothrix orenii H 168]
          Length = 484

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 123/303 (40%), Gaps = 48/303 (15%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +   +D  K +  D  F  +   ++   LL+++    + I+   D       ++IYE ++
Sbjct: 99  VDEHTDRRKILVRDV-FEDSNNYMKSGVLLWQVIDKINEIDF-GDYKERHAFNDIYETIL 156

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           +   S  + G  ++ TPR V       L          +P +   + D  CGTGGFL  A
Sbjct: 157 KDLQSAGNAG--EYYTPRAVTDFVIDRL----------NPQIGEKVADFACGTGGFLISA 204

Query: 224 MNHVADCGSH------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           + H+     +        I   L  HG E +P  H +C   M++  +      D    + 
Sbjct: 205 LEHMKASKENLTTEESETIKNSL--HGIEKKPMPHLLCCTNMILHDI------DFPDILH 256

Query: 278 QGS--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           Q S  T  +D    K++     NPPFG          E+E   G    F P   + S+ +
Sbjct: 257 QNSLATNVRDYPEEKKYDVIAMNPPFG--------GTEEE---GIKMNF-PAEYRTSETA 304

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  + ++++     GGR  IVL    LF     + +  I++ LL    +  IV LP 
Sbjct: 305 DLFMTLILHRIK----KGGRVGIVLPDGFLFGN--DNAKIVIKKKLLNEFNLHTIVRLPN 358

Query: 396 DLF 398
            +F
Sbjct: 359 GVF 361


>gi|297570526|ref|YP_003691870.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926441|gb|ADH87251.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 498

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 113/257 (43%), Gaps = 57/257 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE +++   S  + G  +F TPR V    T  +++  D      P +  T+ DP C
Sbjct: 144 LGGVYEQILKDLQSAGNAG--EFYTPRAV----TRFMVNRVD------PKLRETVMDPAC 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPP---------ILVPHGQELEPETHAVCVAGMLIRRLE 265
           GTGGFLT A+ H  +   H+   P         IL   G E +P  H + V  +++  +E
Sbjct: 192 GTGGFLTCAIEHKRN---HYVQTPQDEAILQRSIL---GVEKKPLPHLLAVTNLILHGIE 245

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +         I+  + L++ L +    +R    ++NPPFG     ++D +E         
Sbjct: 246 N------PDQIKHDNALARPLISWGPKERVEVIVANPPFGG---MEEDGIETNFPQAFRT 296

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
           R      + +D  +   +HL     L P   GRAA+VL    LF    G G ++ ++  L
Sbjct: 297 R------ETADLFLTLFIHL-----LKPR--GRAAVVLPDGFLF----GEGMKTRLKEKL 339

Query: 382 LENDLIEAIVALPTDLF 398
           L    +  IV LP  +F
Sbjct: 340 LAECNLHTIVRLPNGVF 356


>gi|297528756|ref|YP_003670031.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
 gi|297252008|gb|ADI25454.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
          Length = 484

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 132/309 (42%), Gaps = 50/309 (16%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMS 156
           N +  +I +   N ++ +  +     I  +    +L KI     GI+  P  + DR    
Sbjct: 89  NEVFPFIKNLHGNRESAYAKY-MGDAIFMIPTPQMLVKIV---DGIDRIP--MKDRDTKG 142

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +  + G   F TPR ++H+   L+        K +P  I  + DP  G+
Sbjct: 143 DLYEYLLSKIATAGTNGQ--FRTPRHIIHMMVELM--------KPTPEDI--IVDPAAGS 190

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++    S   +   L  H       G +++     +    M++  +E+   
Sbjct: 191 AGFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMDRTMLRIGAMNMMLHGIEN--- 247

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                NI+   +LS+      ++   L+NPPF  K   D DAV  +            L 
Sbjct: 248 ----PNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLDYDAVSND------------LL 289

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K+       L+ LA  L +   GG R A ++    LF   +     +IR+ ++EN  +EA
Sbjct: 290 KVVKTKKTELLFLALFLRILKTGG-RCACIVPDGVLFG--SSKAHKDIRKEIVENHKLEA 346

Query: 390 IVALPTDLF 398
           I+++P+ +F
Sbjct: 347 IISMPSGVF 355


>gi|294782728|ref|ZP_06748054.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481369|gb|EFG29144.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
          Length = 545

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 139/321 (43%), Gaps = 53/321 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ + +       ++ TP+ +  +   LL+       K+    +   YDP+ GTG
Sbjct: 184 IFEYLIKDYNTNGGGKYAEYYTPQSIATIMARLLVGN-----KKDYHSVEC-YDPSAGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             +           SH           Q++   ++ +    +++  L S     +     
Sbjct: 238 TLVM--------ALSHQIGEDKCTIFTQDISQRSNKMLKLNLILNGLVSSLDHAI----- 284

Query: 278 QGSTL---------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           QG TL          +DL T   F + +SNPPF   + ++++ +          RF  G+
Sbjct: 285 QGDTLVYPYHKSDNGEDLRT---FDFVVSNPPFKMDFSENREKIA-----AMPARFWAGV 336

Query: 329 PKI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRW 380
           P I      SM    LF+ H+ N L+   +  G+ AIV+ +  +    A SG E +I   
Sbjct: 337 PNIPAKKKESMAIYTLFIQHVINSLK---SKTGKGAIVIPTGFI---TAKSGVEKKILEK 390

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           ++E+ ++   V++P+++F  T     +    N K  +   KV LI+A+ L    ++   K
Sbjct: 391 IVESKIVYGCVSMPSNVFANTGTNVSVLFFDNAKNHD---KVILIDASKLGEDYQDGKNK 447

Query: 441 RRIINDDQRRQILDIYVSREN 461
           +R + ++    I++ +  ++N
Sbjct: 448 KRRLREEDIELIINTFNDKKN 468


>gi|255690851|ref|ZP_05414526.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623483|gb|EEX46354.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 505

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 53/315 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSE 169
            K IF D +      +  K G+L +   N    E+    V DR    +IYE +++   S 
Sbjct: 113 VKEIFSDLN------QYMKNGILLRQVVNVID-EIDFSDVEDRHTFGDIYEGILKDLQSA 165

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-- 227
            + G  +F TPR +      +L          +P +  +  D T GTGGFLT A+NH+  
Sbjct: 166 GNAG--EFYTPRALTDFMVEIL----------NPQLGESFGDFTSGTGGFLTSALNHLYK 213

Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-- 284
                +  K+    V  GQE +P  + + +  +L+  +E       + NI    +L    
Sbjct: 214 QVKTTNDVKLFQTAVI-GQEWKPLPYLLSITNLLVHDIE-------APNIIHCDSLGTRV 265

Query: 285 -DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     + +    NPP+G        + E   KN       P   + S+ + LF++ + 
Sbjct: 266 GDFKECDKVNVIAMNPPYGG-------STEASVKNN-----FPSDMRSSETADLFMVLIM 313

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTN 402
            +L+      GRAA+++    LF       +  I+  LL++  +  I+ LP  +F   T+
Sbjct: 314 YRLK----ANGRAAVIVPDGFLFG--VDGAKLAIKTKLLKDFNLHTIIRLPGSIFSPYTS 367

Query: 403 IATYLWILSNRKTEE 417
           IAT +   +N + E+
Sbjct: 368 IATNILFFNNERVED 382


>gi|309704073|emb|CBJ03419.1| DNA methylase M [Escherichia coli ETEC H10407]
          Length = 544

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGING--QFRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +LVP          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLVPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|297587005|ref|ZP_06945650.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
 gi|297574986|gb|EFH93705.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
          Length = 489

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 54/273 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE +++   S  S G  +F TPR V  L   ++           P +   + D  CGT
Sbjct: 150 DIYESILKELQSAGSSG--EFYTPRAVTDLMAIMI----------KPKIGEKMADFACGT 197

Query: 217 GGFLTDAMNH-------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           GGFLT  +         VAD  ++         +G E +   + +C+  MLI  L+    
Sbjct: 198 GGFLTSWLKELKKQVKTVADEEAYSN-----SIYGIEKKQFPYMLCITNMLIHDLD---- 248

Query: 270 RDLSKNIQQGSTLSKDL--FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                NI   ++L KD+  +T + +F   L NPP+G   ++D     K H   +L     
Sbjct: 249 ---VPNIYHDNSLLKDILDYTDEDKFDVILMNPPYGGSEKEDV----KNHFPQDLAS--- 298

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+ + LF+  +  +L+      GRAA++L    LF   + + +  I++ L+    
Sbjct: 299 -----SETADLFMSVIMYRLK----ENGRAAVILPDGFLFG--SDNAKINIKKNLINKFN 347

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSNR-KTEE 417
           +  I+ +P  +F   T+I T +    N  KT+E
Sbjct: 348 LHTIIRMPNSVFAPYTSITTNILFFDNTGKTKE 380


>gi|318042339|ref|ZP_07974295.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Synechococcus sp. CB0101]
          Length = 570

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 53/266 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE  I+R G+    G E + TPR ++     ++          +P +  T+YDP  
Sbjct: 239 LSMLYEEKIKRMGNAGRNGGE-YYTPRPLIRAIVQVI----------NPQIGETVYDPAV 287

Query: 215 GTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           G+ GFL +A  ++   G+  +                G+E +   + + +  M++  +E+
Sbjct: 288 GSAGFLCEAFEYMRKGGASGRELSTEDLDTLQTRTFTGKEKKSLAYVIAIMNMILHGIEA 347

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEH--KNGEL 321
            P+      I   +TL+++L   +   RF   L+NPPFG    K+   V++    ++GE 
Sbjct: 348 -PK------IIHANTLTENLSDVQERDRFDVILANPPFGGSERKE---VQQNFPIRSGET 397

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                        + LFL H    L      GGRA +V+ ++ L N    S    +R+ L
Sbjct: 398 -------------AFLFLQHFIRMLR----AGGRAGVVIKNTLLSNSDNAS--VALRQKL 438

Query: 382 LENDLIEAIVALPTDLFFRTNIATYL 407
           LE   +  ++  P   F    + T +
Sbjct: 439 LEECNLHTVLDCPGGTFQGAGVKTVV 464


>gi|206603920|gb|EDZ40400.1| Putative Type I Restriction modification system, M subunit
           [Leptospirillum sp. Group II '5-way CG']
          Length = 549

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 138/348 (39%), Gaps = 85/348 (24%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            R+ +  Y+AS + +   +  D+ F   +  +    +L ++     G +      PD V 
Sbjct: 88  VRDAVFPYMASLAKDEPEV-ADY-FRDAVLEIVDPNVLKQVIDELDGFDFR-KMGPD-VK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +I+E+L+   G     G   F TPR +      ++ DPD         +  TL+DP CG
Sbjct: 144 GDIFEYLLTHLGQSALNG--QFRTPRQIRAFMVEMV-DPD---------IGDTLFDPACG 191

Query: 216 TGGFLTDAMNH-VADCGSHHKIPPILVPHGQE-LEPETHAVCVAGMLIRRLESDPR---- 269
           T GFL DA+++ +A    H +  PI   +G+E LE     +  A   I  L++  +    
Sbjct: 192 TAGFLIDALDYLLAKYSDHVEEYPI---YGEEWLEKRGQTLVEAKKAISNLQTYKKGAGE 248

Query: 270 --------------RDLSKNI-------------------------QQGSTLSKDLFTGK 290
                          D+S+ +                         + G    +DL   +
Sbjct: 249 RIPDWKILEASIYGTDVSRQMLRISVMNLVLHGIRHARLKRANALSEMGGLSEEDL--KR 306

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   LSNPPF  +  KD    +              LP  S  S L  + +  +   P 
Sbjct: 307 QYKVILSNPPFAGQLPKDSIRAD--------------LPTNSKKSELLFLSMMMQHLAP- 351

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             GGR A+V+    LF G   +     ++ L+E DL+ A+++LP  +F
Sbjct: 352 --GGRCAVVIPEGLLF-GSTKAHTDLRKKLLMEFDLM-AVISLPAGVF 395


>gi|295837452|ref|ZP_06824385.1| type I restriction-modification system, M subunit [Streptomyces sp.
           SPB74]
 gi|197699692|gb|EDY46625.1| type I restriction-modification system, M subunit [Streptomyces sp.
           SPB74]
          Length = 507

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 113/276 (40%), Gaps = 48/276 (17%)

Query: 131 GLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           GLL K+     GI +   DT  D     IYE+++ +  +    G   F TPR ++ L   
Sbjct: 121 GLLAKVVDLLDGISMDASDTKGD-----IYEYMLAKIATSGQNG--QFRTPRHIIDLMVE 173

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPILVP 242
           +            PG    + DP CGT GFL  A +++            H       + 
Sbjct: 174 MT----------RPGPRDVICDPACGTAGFLVQAASYLRRVHREDLLEAEHRGHFNEKMF 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           HG + +     +    ML+  +E+    D+      G + + +    +R+   L+NPPF 
Sbjct: 224 HGFDFDTTMLRIGSMNMLLHGVENP---DIRYRDSLGESAAGE---AERYSLILANPPFA 277

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              + D  A + +     + R      K ++   L L     K       GGRAA+++  
Sbjct: 278 GSLDHDSTAADLQR----IAR-----TKKTELLFLALFLRLLK------SGGRAAVIVPD 322

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             LF   A     E+RR L+E+  ++A+V LP+ +F
Sbjct: 323 GVLFG--ATKAHRELRRVLVEDQQLQAVVKLPSGVF 356


>gi|257058611|ref|YP_003136499.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
 gi|256588777|gb|ACU99663.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
          Length = 1005

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 63/336 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  ++YE+L+ +       G   F TPR ++ L   ++           P     + D  
Sbjct: 577 VKGDLYEYLLGKLNISGRNGQ--FRTPRHIIRLMVEMV----------DPKPNERIGDLA 624

Query: 214 CGTGGFLTDAMNHVAD-----------CGSHHKIPPILVPHGQE-LEPETHAVCV--AGM 259
            GT GFL ++  ++ +            G+ H I  +L P   E LE E        +GM
Sbjct: 625 AGTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTAYDNDSGM 684

Query: 260 LIRRLESDPRRDLSKNIQQ-----GSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVE 313
            + R+ S     +   I+        TLSK+    K     L NPPF GK  EKD     
Sbjct: 685 TMLRIGS--MNLMLHGIKYPRFFYQDTLSKEFKDEKSLDVALMNPPFKGKMDEKD----- 737

Query: 314 KEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                       P LP K     +LFL  +   LE+    GGR  +++    LF   +  
Sbjct: 738 ----------INPYLPTKCKKTELLFLYQILRVLEM----GGRCGVIVPDGVLFG--SSK 781

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              +IR+ L+E + ++ +V++P+ +F     ++T + + +   T +R      I   D+ 
Sbjct: 782 QHQDIRQKLIEENRLDGVVSMPSGVFKPYAGVSTAILLFTKGATTDR------IWFYDME 835

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
               +   KR+ I ++    ILD + +R +  FS +
Sbjct: 836 HDGFSLDDKRQPIEENDIPDILDCWRNRFDNGFSAL 871


>gi|255066319|ref|ZP_05318174.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256]
 gi|255049529|gb|EET44993.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256]
          Length = 637

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 53/289 (18%)

Query: 178 MTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSH 233
           +TPR +V L   L+ + P D++F           DP CGT GFL  AM+H+    D  + 
Sbjct: 329 LTPRHIVELFCELIDIKPTDSVF-----------DPCCGTAGFLIAAMHHMLQKTDKEAE 377

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKR 291
            +       HG EL+P    +    M++       R D   N++Q   L ++      K 
Sbjct: 378 KRNIRKNQLHGIELQPYMFTIATTNMIL-------RGDGKSNLEQEDFLKQNPAQLQLKG 430

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  + NPP+ +                   +  P L +IS     F  HL + L     
Sbjct: 431 CNIGMMNPPYSQG-----------------SKANPNLYEIS-----FTEHLLDSL----T 464

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +++  S +  G+    E  I+  +L+   +E ++ L  + F+       + + S
Sbjct: 465 EDGKAIVIVPQSSM-TGKTKE-EQSIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFS 522

Query: 412 NRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                ++   V+ IN   D +   ++ G    I   D+++ +LD++  R
Sbjct: 523 TGIPHDKDKTVKFINFENDGFEVQKHIGLVETISAKDKKQHLLDVWFGR 571


>gi|255284466|ref|ZP_05349021.1| putative type I restriction-modification system, M subunit
           [Bryantella formatexigens DSM 14469]
 gi|255264976|gb|EET58181.1| putative type I restriction-modification system, M subunit
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 107/255 (41%), Gaps = 48/255 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  ++YE+L+ +       G   F TPR ++ +   ++           P     + DP 
Sbjct: 154 VRGDVYEYLLSKIAQSGRNGQ--FRTPRHIIRMMVEMM----------DPSSDEVICDPA 201

Query: 214 CGTGGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           CGT GFL  A  ++ +              H +  +   HG +++     +    M+   
Sbjct: 202 CGTSGFLVAAGEYLKENRKEEIFFDKQKKDHYMNHMF--HGYDMDRTMLRIGAMNMMTHG 259

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +++         I+   +LS       ++   L+NPPF       K +++ E  +G+L +
Sbjct: 260 IDN-------PFIEYRDSLSDQNPDKDKYSLILANPPF-------KGSLDAESVSGDLLK 305

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L++    GGR A ++    LF   +     +IR+ ++E
Sbjct: 306 ----VCKTKKTELLFLALFLRMLKI----GGRCACIVPDGVLFG--SSKAHKDIRKEIVE 355

Query: 384 NDLIEAIVALPTDLF 398
           N  +EA++++P+ +F
Sbjct: 356 NQRLEAVISMPSGVF 370


>gi|260914376|ref|ZP_05920845.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631477|gb|EEX49659.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 667

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 126/326 (38%), Gaps = 81/326 (24%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++   GS +      F TPR+V+H+A  ++          +P +   + DP CGTGG
Sbjct: 292 YEEIV---GSNLKGDRGQFFTPRNVMHMAVKMI----------NPKLDEKILDPACGTGG 338

Query: 219 FLTDAMNHV---------ADCGS-------------HHKIPPILVPH--GQELEPETHAV 254
           FL  AMN V          D G+               +I         G ++ PE    
Sbjct: 339 FLVTAMNMVIEQLKQDWAKDLGADEHQWGDDEKKALQQRISEAAASSFFGFDIAPELVKA 398

Query: 255 CVAGMLIRR------LESDP-------RRDLSKNIQQGSTLSKDLFTGKR----FHYCLS 297
               M++        L +D          D  +N+ +   +S   F   +    F   ++
Sbjct: 399 TKMNMVMNNDGSGNILRNDSLLPPHLWESDFKENLAKALGISASQFKSHQDIGLFDVIIT 458

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----- 352
           NPPFG K    ++ +  +++ G     G   PK   G+      + +    PP       
Sbjct: 459 NPPFGSKITIQQEYMLNQYEIGH----GWENPKKKGGTEWLKKSVTSA--APPEQLFVER 512

Query: 353 -------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
                   GR AIVL  + L  G  G G   IR+WLL+   I A V L ++ F   T + 
Sbjct: 513 CLQLLKPAGRMAIVLPDNIL--GAPGLG--YIRQWLLKEAKIIASVDLDSNTFQPHTGVQ 568

Query: 405 TYLWILSNRKTEERR----GKVQLIN 426
           T + IL  +   E++    GK+Q  N
Sbjct: 569 TSILILQKKTEAEKKADLEGKMQPYN 594


>gi|148378678|ref|YP_001253219.1| type I restriction enzyme M subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930941|ref|YP_001383062.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936955|ref|YP_001386611.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. Hall]
 gi|148288162|emb|CAL82230.1| type I restriction enzyme M subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|152926985|gb|ABS32485.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932869|gb|ABS38368.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. Hall]
          Length = 485

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 49/287 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            S  + ++    +L KI  +   I ++  DT  D     +YE+L+ +     + G   F 
Sbjct: 110 MSDAMFKIPTPLMLSKIVDSIDNINMNDKDTKGD-----LYEYLLSKIAQAGTNGQ--FR 162

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++ +   L+        K +P  I  + DP  GT GFL  A  ++ +  +      
Sbjct: 163 TPRHIIKMMAELM--------KPTPEDI--IVDPAMGTAGFLVGAEEYLRENHNDLFFVQ 212

Query: 239 ILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            L  H       G +++     +    M++  +++        NI+   +LS+     ++
Sbjct: 213 GLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVDN-------PNIEYKDSLSETNKDSEK 265

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF  K   D +AV  +            L K+S      L+ LA  L +   
Sbjct: 266 YTLVLANPPF--KGSLDYEAVSAD------------LLKVSKTKKTELLFLALFLRILKT 311

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GG R A ++    LF   +  G  +IRR +++N+ +EAI+++P+ +F
Sbjct: 312 GG-RCASIVPDGVLFG--STKGHKDIRREIVDNNKLEAIISMPSGVF 355


>gi|260910278|ref|ZP_05916954.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260635602|gb|EEX53616.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 505

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 139/317 (43%), Gaps = 59/317 (18%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
            K +FED +      +  K G+L +   N    E+  D   DR M  +IYE +++   S 
Sbjct: 113 VKEVFEDLN------QYMKNGILLRQVINVIN-EIEFDDAEDRHMFGDIYEGILKDLQSA 165

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-- 227
            + G  +F TPR +       L          +P +  T+ D T GTGGFLT A+N++  
Sbjct: 166 GNAG--EFYTPRALTDFIIQQL----------NPVLGETVGDFTSGTGGFLTSALNYLQK 213

Query: 228 ----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                + G  ++   +    GQE +P  + + +  +L+  +E       + NI+   +L 
Sbjct: 214 QVQTTNAGRLYQQSVV----GQEWKPLPYLLSITNLLLHDVE-------APNIRHCDSLG 262

Query: 284 ---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               D     R +    NPP+G       DA  K +   E         + S+ + LF++
Sbjct: 263 TKMSDFKETDRVNVIAMNPPYGGS----TDAAAKSNFPMEF--------RSSETADLFMV 310

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
            +  +L+      GRAA+++    LF G  G+ +  I++ +L    +  I+ LP  +F  
Sbjct: 311 LIMYRLK----RDGRAAVIVPDGFLF-GMDGA-KLAIKQKMLREFNLHTIIRLPGSIFSP 364

Query: 400 RTNIATYLWILSNRKTE 416
            T+IAT +   +N + +
Sbjct: 365 YTSIATNILFFNNERVD 381


>gi|166368435|ref|YP_001660708.1| type I restriction enzyme M protein [Microcystis aeruginosa
           NIES-843]
 gi|166090808|dbj|BAG05516.1| type I restriction enzyme M protein [Microcystis aeruginosa
           NIES-843]
          Length = 495

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 132/320 (41%), Gaps = 51/320 (15%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  + G   F TPR ++ +   LL          +PG    + DP CGT
Sbjct: 146 DLYEYMLSKLSTAGTNG--QFRTPRHIIKMMVELL----------APGPREVICDPACGT 193

Query: 217 GGFLTDAMNHVADC------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           GGFL  A  +V +             G+       +  HG + +     +    +++  +
Sbjct: 194 GGFLVAAAEYVRELKDSEGGRLLHERGNLEHFNNQMF-HGFDFDATMLRIGSMNLMLHGI 252

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E  P  +   ++ +     +D FT       L+NPPF       K +VEK          
Sbjct: 253 EQ-PIIEARDSLSEDHAGVEDSFT-----MILANPPF-------KGSVEK-------STI 292

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L KI D +   L+ +A  L L    GG+ A+++    LF   +     +IR  L+E 
Sbjct: 293 AKDLSKIIDTTKTELLFMALFLRLLKT-GGKGAVIVPDGVLFG--SSKAHKDIRTILVEE 349

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +E ++++P+ +F     ++T + I +     E+      +   D+     +   KR+ 
Sbjct: 350 HKLEGVISMPSGVFKPYAGVSTAILIFTKLGVREK--GTDFVWFYDMVADGFSLDDKRQP 407

Query: 444 INDDQRRQILDIYVSRENGK 463
           I D+    +L  +  R++ K
Sbjct: 408 IADNDIPDLLRCWQQRDSAK 427


>gi|289644883|ref|ZP_06476931.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata]
 gi|289505312|gb|EFD26363.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata]
          Length = 564

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 124/319 (38%), Gaps = 46/319 (14%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +  +       +F TP  V  +   LL    DA           + DP CG+G  
Sbjct: 218 QFLLEQLAAVQGRRGTEFFTPPSVTRVIMELLDPRPDA----------RICDPCCGSGEL 267

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD----PRRDLSKN 275
           L  A          H      V HG  L+ ++  +      +  L +D    P   L  +
Sbjct: 268 LAAAGTRARS--RRHSTESAQVLHGYALDQQSWRLAQLTAALHGLPADLGEYPVEPLRLH 325

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            Q+ +          R+     NPPF      D D   + H      R+GP  P   + +
Sbjct: 326 HQRTT----------RYDVVAMNPPFNMSGWSDGDPAHRPHW-----RYGP--PPRHNAN 368

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             +L + A  L    + GG A +++  S          E  IR  ++E+ ++E +VALP+
Sbjct: 369 FAWLQYAALLL----DDGGSAVVIMPHSAATTD--NPAEVTIRTNMIEDGVMECVVALPS 422

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            LF  T+    LW+L     + RR  V  ++AT + T I    +  RI+ DD   +I   
Sbjct: 423 RLFRETSAPATLWVLRRPSRDSRR-DVLFVDATAVGTVI---DRDYRILTDDDVARITGA 478

Query: 456 YVSRENGKFSRMLDYRTFG 474
           Y   ++ K SR   YR   
Sbjct: 479 Y---QDWKGSRPGTYRAVA 494


>gi|149199124|ref|ZP_01876163.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Lentisphaera araneosa
           HTCC2155]
 gi|149137721|gb|EDM26135.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Lentisphaera araneosa
           HTCC2155]
          Length = 494

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 45/250 (18%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+L+ +  +  + G   F TPR ++ L   L+           P    T+ DP  G+
Sbjct: 150 DIYEYLLSKIATSGTLGQ--FRTPRHIIDLMVDLM----------RPTPQDTIIDPASGS 197

Query: 217 GGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL  A N++         D   +H     +  +G +++     +    M++  +E   
Sbjct: 198 CGFLVSANNYLRNNHKEIFTDGALNHHFNNEMF-YGHDMDSTMLRIGAMNMMLHGVE--- 253

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + NI +  +L ++      +   L+NPPF       K A++ E  +  L      +
Sbjct: 254 ----NPNIDRRDSLGEENKDENSYSLILANPPF-------KGALDFEACSKSL----LAM 298

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL  +   L+L    GGR A+++    LF   +     +IR  L+E   +E
Sbjct: 299 CKTKKTELLFLALMIRSLKL----GGRCAVIVPDGVLFG--SSKAHKQIREQLVEKQNLE 352

Query: 389 AIVALPTDLF 398
            ++++P+ +F
Sbjct: 353 GVISMPSGVF 362


>gi|198282372|ref|YP_002218693.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246893|gb|ACH82486.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 484

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 126/295 (42%), Gaps = 46/295 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS    +++    L +I +   G+     T     +S++YE  I+  G+    G E + T
Sbjct: 123 FSEIKNKIQSGYNLREIVEIIDGLRFRSQT-EKHELSHLYEAKIKNMGNAGRNGGE-YYT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCG---SHHK 235
           PR ++     ++          +P +   +YD   G+ GFL +A +++ A  G   S  +
Sbjct: 181 PRPLIRAIVQVV----------APKVGEKIYDGAVGSAGFLCEAFDYLKAQPGLTTSDMQ 230

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RF 292
                  +G+E +   + + +  M++  ++       + NI   +TL+++L   +   R 
Sbjct: 231 TLQERTFYGKEKKSLAYVIAIMNMILHGID-------APNIVHTNTLAENLMDIQPKDRV 283

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG K  K            E+ +  P   K  + + LFL H    L+     
Sbjct: 284 DVVLANPPFGGKERK------------EVQQNFP--IKTGETAFLFLQHFIRMLK----A 325

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           GGR  +V+ ++ L N    S    +R+ LLE+  +  ++ LP   F    + T +
Sbjct: 326 GGRGGVVIKNTFLSNTDNAS--VSLRKLLLEDCNLHTVLDLPGGTFQGAGVKTVV 378


>gi|253689249|ref|YP_003018439.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755827|gb|ACT13903.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 544

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 150/368 (40%), Gaps = 89/368 (24%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKSLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRDHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGL-- 328
               + Q  +++    +   F+  L+NPPF G   E+D D               P L  
Sbjct: 280 YQDTMSQSFSINFPQASKNAFNLILANPPFTGSLDEEDID---------------PSLLA 324

Query: 329 -PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K     +LFL+ +   L++    GGR+A ++    LF   +      +R+ L+E++ +
Sbjct: 325 TVKTKKTELLFLVRILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQL 378

Query: 388 EAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           EA+V LP+ +F     +AT + I +      + G+   +   DL    +N+G       D
Sbjct: 379 EAVVNLPSGVFKPYAGVATAILIFT------KGGQTDNVWFYDL----QNDGYSL----D 424

Query: 447 DQRRQILD 454
           D+R QI D
Sbjct: 425 DKRNQIKD 432


>gi|314933992|ref|ZP_07841357.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87]
 gi|313654142|gb|EFS17899.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87]
          Length = 635

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 120/287 (41%), Gaps = 51/287 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           ++ N Y   ++  GS+        +TPR + +L   L+ ++ +D +            DP
Sbjct: 306 ILGNFYGEFVKYGGSD-GNSLGIVLTPRHITNLMCELIDINENDYVL-----------DP 353

Query: 213 TCGTGGFLTDAM----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CG+GGFL  AM    N   D     +I    + HG EL+ +   +    M++R    D 
Sbjct: 354 CCGSGGFLIAAMNKMLNQTTDESKQAQIKQKQL-HGIELQQKLFTIATTNMILR---GDG 409

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           + +L ++      + KD +T K     L NPP+ +   K+                   L
Sbjct: 410 KSNLKRD--DIFHVGKDFYTDK-ITKALINPPYSQAKTKN-------------------L 447

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             +S+ S      +   L L  +G   AAIV  S+ +  G+    +   +R +L+N+ +E
Sbjct: 448 SHLSEISF-----INETLSLMKSGAKLAAIVPQSTMI--GKT-KNDKNYKREILDNNSLE 499

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            ++ L  D F+   +   + + +    ++ + +V  +N +D    +R
Sbjct: 500 TVITLNKDTFYGVGVNPCIAVFTAGIPQDDKKRVNFVNFSDDGYVVR 546


>gi|168183359|ref|ZP_02618023.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Bf]
 gi|237793995|ref|YP_002861547.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Ba4 str. 657]
 gi|182673480|gb|EDT85441.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Bf]
 gi|229263879|gb|ACQ54912.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Ba4 str. 657]
          Length = 485

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 43/249 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +     + G   F TPR ++ +   L+        K +P  I  + DP  GT
Sbjct: 143 DLYEYLLSKIAQAGTNGQ--FRTPRHIIKMMAELM--------KPTPEDI--IVDPAMGT 190

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++ +  S   +   L  H       G +++     +    M++  +++   
Sbjct: 191 AGFLVGAEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVDN--- 247

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                NI+   +LS+     +++   L+NPPF  K   D +AV  +            + 
Sbjct: 248 ----PNIEYKDSLSETNKDREKYTLVLANPPF--KGSLDYEAVSAD------------IL 289

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K+S      L+ LA  L +   GG R A ++    LF   +  G  +IRR +++N+ +EA
Sbjct: 290 KVSKTKKTELLFLALFLRILKTGG-RCASIVPDGVLFG--STKGHKDIRREIVDNNKLEA 346

Query: 390 IVALPTDLF 398
           I+++P+ +F
Sbjct: 347 IISMPSGVF 355


>gi|198277094|ref|ZP_03209625.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135]
 gi|198269592|gb|EDY93862.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135]
          Length = 502

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 133/315 (42%), Gaps = 51/315 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSE 169
           AK+I ++  F+     ++   LL ++    + IE   D   DR    +IYE +++   S 
Sbjct: 105 AKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF--DDADDRHTFGDIYEGILKDLQSA 161

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--- 226
            + G  +F TPR +      +L           P +  T  D T GTGGFLT A+ H   
Sbjct: 162 GNAG--EFYTPRALTDFIVMML----------DPKLGETFGDFTSGTGGFLTSALKHMGR 209

Query: 227 -VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-- 283
            +       K+   +V  GQE +P  + + +  +L+  +E       + NI    +L   
Sbjct: 210 NIGSAADGEKLQNAVV--GQEWKPLPYLLSITNLLLHDIE-------APNITNCDSLGTN 260

Query: 284 -KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D     +      NPP+G   E   D+V+            P   + S+ + LF+  +
Sbjct: 261 VTDFKESDKVDVIGMNPPYGGSTE---DSVKSNF---------PVQYRSSETADLFIALI 308

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RT 401
             +L+     GGR  +++    LF G  G+ +  ++  LL    +  I+ LP  +F   T
Sbjct: 309 MYRLK----AGGRCGVIIPDGFLF-GTDGA-KLALKENLLRKFNLHTIIRLPGSIFSPYT 362

Query: 402 NIATYLWILSNRKTE 416
           +IAT +   +N + E
Sbjct: 363 SIATNILFFNNEEAE 377


>gi|315187187|gb|EFU20944.1| Site-specific DNA-methyltransferase (adenine-specific) [Spirochaeta
           thermophila DSM 6578]
          Length = 332

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 41/307 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV--------- 55
            G+     N +W+ A+ L G     ++  V+L    L+ +    E  R  +         
Sbjct: 7   NGANLGFENKLWEMADKLRGHMDAAEYKHVVLGLIFLKYISDTFEAHRKQLLQEPYADPE 66

Query: 56  -REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
            R++YLA   +N+    +V       +  ++    T+G    R  +E+ I   + + K +
Sbjct: 67  DRDEYLA---ANV---FWVPPEARWEHIQAQAPQPTIGQVIDRA-MEA-IERENPSLKGV 118

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               D+S       + G L K+  +   ++     V D  +  +YE+ + RF +   +G 
Sbjct: 119 LPK-DYSRPTLDKVRLGELVKLVGDID-LKARESGVKD-PLGRVYEYFLGRFAAAEGKGG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ VV L   ++           P   R +YDP CG+GG    +   V   G   
Sbjct: 176 GEFYTPQCVVQLLVEMI----------EPYRGR-VYDPCCGSGGMFVQSEKFVEAHGG-- 222

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K+  I + +GQE  P T  +    + IRR+++D             T  +DL    +  +
Sbjct: 223 KLGDIAI-YGQESNPTTWRLAKMNLAIRRIDAD------LGPYAADTFFEDLHKDLKADF 275

Query: 295 CLSNPPF 301
            L+NPPF
Sbjct: 276 ILANPPF 282


>gi|37680386|ref|NP_934995.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199133|dbj|BAC94966.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 638

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 113/271 (41%), Gaps = 52/271 (19%)

Query: 139 NFSGIELHPDTVPDRVMSN-IYEHLIRRFGS-EVSEGAEDFMTPRDVVHLATALLLDPDD 196
           N+  IE   D +P R+ S  I + +I R    ++SEG E      D  HL   ++ D   
Sbjct: 103 NWEKIENILDQIPFRIRSTKILDLVIHRLEELDLSEGIE-----IDFDHLLLNMVKDSGS 157

Query: 197 ALFKESP-----GMIR--------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           +    SP      M+R        T+YDP  GTGG   +A  H       + +  I    
Sbjct: 158 SGAYYSPRPLIKAMVRVLNPKPLATVYDPAMGTGGVFVEAKKHAKGKSCFNGLSFI---- 213

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G +L P  H +    +L+  +      D+S      S L +D    +++ + +S  PFGK
Sbjct: 214 GNDLSPFAHLIGALNLLLNDI------DISGVSISDSLLDRDC---QQYDFVISGVPFGK 264

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             E  K        +G L               +FL H  +KL      GGRAAIV+   
Sbjct: 265 VNELTKYEYYYHGYSGSL-------------EAMFLKHTMDKLA----KGGRAAIVIPDG 307

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            LF G A S   E++R LL    + A+++LP
Sbjct: 308 ILF-GNA-SHLDELKRQLLTQFNLHAVLSLP 336


>gi|226947934|ref|YP_002803025.1| type I restriction modification system M subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843533|gb|ACO86199.1| type I restriction modification system M subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 494

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 49/287 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            S  + ++    +L KI      +E+   DT  D     +YE+L+ +  +  + G   F 
Sbjct: 110 MSDAMFKIPTPLMLSKIVDAIDNLEIQDKDTKGD-----LYEYLLSKVATAGTNGQ--FR 162

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++ +   L+        K +P  I  + DP  GT GFL  A  ++ +  +   +  
Sbjct: 163 TPRHIIKMMAELM--------KPTPEDI--IVDPAMGTAGFLVGAEEYLREKHNDLFLVQ 212

Query: 239 ILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            L  H       G +++     +    M++  +++        NI+   +LS+     ++
Sbjct: 213 GLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVDN-------PNIEYKDSLSETNKDSEK 265

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF  K   D +AV  +            + K+S      L+ LA  L +   
Sbjct: 266 YTLVLANPPF--KGSLDYEAVSAD------------ILKVSKTKKTELLFLALFLRILKK 311

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GG R A ++    LF   +  G  +IRR +++N+ +EAI+++P+ +F
Sbjct: 312 GG-RCASIVPDGVLFG--STKGHKDIRREIVDNNKLEAIISMPSGVF 355


>gi|325122266|gb|ADY81789.1| type I restriction-modification system methyltransferase subunit
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 1313

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 145/348 (41%), Gaps = 55/348 (15%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           ++TL S   RNN E +  +     K +        +I     A L+  + +    ++L P
Sbjct: 79  INTLASHIERNNAEKFNTAGFGYLKHLHNPLHHIQSI----DASLMLPVIQWLCSLQLTP 134

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAE-DFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            T P +++S+I+E ++    +E  +  + +F +   + HL   L+          +P   
Sbjct: 135 LTAP-KILSDIFERIL----TETRDSNDGEFSSSESLSHLIAELI----------NPKSG 179

Query: 207 RTLYDPTCGTGGFLTDAMN--HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            ++YDP  GTG FL  A N   +      +         G  L+   + + ++  L    
Sbjct: 180 ESIYDPCFGTGNFLISAWNLFQLRQIKQQNS--------GNTLQVSGNDINISAFLTGLT 231

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR- 323
           +       S  +  G++L  +      F   +++PP G K           H N    R 
Sbjct: 232 KIVLSGVPSTQLTLGNSLDDNSSKDAAFDIVVAHPPVGIK----------AHSNVHYYRH 281

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F    P I+    LF+    ++L+      GRA IV+    LF G A   + ++R+ LL 
Sbjct: 282 FQFKSPDITG---LFVQQAISRLKT----NGRAVIVVPEGFLFRGGA---DRDLRKHLLT 331

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
           N +++A+V LPT +    +NI   L +L+          VQ+++A +L
Sbjct: 332 NGMVQAVVGLPTGVIISGSNIRGCLLVLNKNGNFHH---VQMVDAKNL 376


>gi|153815628|ref|ZP_01968296.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756]
 gi|145847059|gb|EDK23977.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756]
          Length = 489

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 46/270 (17%)

Query: 138 KNFSGIE-LHPDTVPDRVMS-NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           K  +G+E L  + + D  M  ++YE+++ +  S    GA  F TP+ +  +   L++   
Sbjct: 127 KVVAGLEDLFENDIKDLDMQGDLYEYMLGKLNSAGRLGA--FRTPKHIRDMMVKLMM--- 181

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-------E 248
                 +P M   + DP CGT GFL  +  ++     +         +G E        E
Sbjct: 182 -----PTPDM--KICDPACGTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDE 234

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                 C+  ML           ++  + +  ++SKD      +   L+NPPF       
Sbjct: 235 TMCRLSCMNLML--------HSVINPQLNKQDSVSKDYQVKDAYDLILANPPF------- 279

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K  + KE+ N  L      +   +   +LF+      L +    GGR A ++    LF  
Sbjct: 280 KGTINKENINESL----LAITNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLFG- 330

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            +      +R+ L+EN  +EA++++P+ +F
Sbjct: 331 -SSKAHKNLRKELIENQYLEAVISMPSGVF 359


>gi|315225317|ref|ZP_07867133.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314944726|gb|EFS96759.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 499

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 43/265 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  S G  +F TPR +      ++           P +   + D  CGTG
Sbjct: 150 IYEAILKEMQSAGSAG--EFYTPRALTDFMAEII----------EPQIGEKMADFACGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GF+T  +N +    +  +         +G E +   + +CV  +L+  +++         
Sbjct: 198 GFITSWLNTLDKKATTAEAKEAWAQSIYGIEKKQFPYMLCVTNLLLHNIDAPA------- 250

Query: 276 IQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   ++L+KD+       +F   L NPP+G   + D     K+H   +L          S
Sbjct: 251 VVHDNSLTKDVLNYTDDDKFDVVLMNPPYGGSEKNDI----KQHFPSDLSS--------S 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF++ +  +L+      GRAA++L    LF   A + +  I+  LL    +  I+ 
Sbjct: 299 ETADLFMVLIMYRLK----QNGRAAVILPDGFLFG--ADNAKFAIKERLLRKFNLHTIIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTE 416
           LP  +F   T+IAT +    N + E
Sbjct: 353 LPGSVFSPYTSIATNILFFDNVQAE 377


>gi|330907935|gb|EGH36454.1| type 1 restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli AA86]
          Length = 544

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLATAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|283796716|ref|ZP_06345869.1| type I restriction enzyme M protein [Clostridium sp. M62/1]
 gi|291075600|gb|EFE12964.1| type I restriction enzyme M protein [Clostridium sp. M62/1]
          Length = 542

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 167/391 (42%), Gaps = 56/391 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDV-VHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++E++I+ + +       ++ TP  + V +A  L+ D  D    E        YDP  
Sbjct: 180 AGVFEYVIKDYNTNGGGVYAEYYTPHAIAVIMARLLVGDRQDLHNIEC-------YDPAA 232

Query: 215 GTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTG  L    + + +  C              Q+   +++ +    +++  L S     +
Sbjct: 233 GTGTLLMALAHQIGEDRC----------TIFAQDRSQKSNKMLKLNLILNGLVSSLDHAI 282

Query: 273 SKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                QG TL      S D  + ++F Y + NPPF   + + ++ +          RF  
Sbjct: 283 -----QGDTLTDPFHMSDDGKSLRQFDYEVCNPPFNLDFSETRETLA-----AMPARFWA 332

Query: 327 GLPKI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G+P +      SM     FL H+ N ++  PN  G+AAIVL +   F     S E ++ +
Sbjct: 333 GIPNVPKKKKESMSIYTCFLQHVLNSMK--PN--GKAAIVLPTG--FLTAKSSVEGKLLK 386

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            ++   L+  ++++P+++F  T     +    N K+ +   KV LI+A+ L    +    
Sbjct: 387 HIVNERLVYGVISMPSNVFANTGTNVSVVFFDNSKSSD---KVILIDASKLGEEYQEGNN 443

Query: 440 KRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           K+  +   +   I+D +++++  + FS  + Y     ++  +         ++   L + 
Sbjct: 444 KKVRLTPSEIDMIVDTFLNKKTVEDFSVAVSYEDIEAKKCSLAAGQYFDVKIEYVELTQE 503

Query: 499 EADITWRKLSPLHQSFWLD---ILKPMMQQI 526
           E +    +L+   QS++ +   + K +M+Q+
Sbjct: 504 EFESKMSELTSNLQSYFDEGNVLQKEIMEQL 534


>gi|332877499|ref|ZP_08445246.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684605|gb|EGJ57455.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 498

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 59/260 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +M ++YE+++    +  + G   F TPR ++ +   L+           P +  T+ DP 
Sbjct: 152 MMGDVYEYMLGIMAASGTNG--QFRTPRHIIRMMVELM----------RPTLDDTICDPA 199

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIR 262
            G+ GF+ +A  ++    + H+   +L           + HG + +     +    M++ 
Sbjct: 200 MGSAGFIMEAAKYI----TEHQSDELLNIEEKERFRKEIFHGSDSDASMLRIGCMNMMLH 255

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            ++         N+   ++LS +     R+  CL+NPPF    + D           ++ 
Sbjct: 256 DVDE-------PNLYYRNSLSDENDDTNRYTLCLANPPFAGSLDTD-----------DIA 297

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE----IR 378
                  K     +LFL  +   L+     GGR A ++  + L      +G+S+    IR
Sbjct: 298 HTLKAAVKTKKTELLFLALMMRMLQ----SGGRCASIVPDTVL------TGDSKAYKTIR 347

Query: 379 RWLLENDLIEAIVALPTDLF 398
             L++N  ++A++ +P+ +F
Sbjct: 348 SALVDNHCMQAVITMPSGVF 367


>gi|257437917|ref|ZP_05613672.1| putative type I restriction-modification system, M subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257199577|gb|EEU97861.1| putative type I restriction-modification system, M subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 510

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 45/274 (16%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L KI      +  H D     +  ++YE+++ +  S    G   F TP+ +  +   L+
Sbjct: 147 VLQKIITGLEDLYTH-DIADLDMQGDLYEYMLLKLSSAGRNG--QFRTPKHIRDMMVELV 203

Query: 192 L-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHGQE 246
              PDD +            DP CGT GFL  +      H  D  +  +      P    
Sbjct: 204 QPTPDDFI-----------CDPACGTAGFLVSSAQYLRAHYEDSMTSEQWQHFAGPMFTG 252

Query: 247 LEPETHAVCVAGM-LIRRLESDPRRDLSKNI-QQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            + +   + ++ M L+    ++P  D   ++ +Q S  SK       +  CL+NPPF   
Sbjct: 253 FDMDRTMLRISAMNLMLHSITNPEIDYKDSVSKQNSICSK-------YTICLANPPF--- 302

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K  V+ E  N +L      +       +LFL      L+     GGR A ++    
Sbjct: 303 ----KGTVDAESINDDL----KAVTNTKKTELLFLALFLRMLKT----GGRCACIVPDGV 350

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           LF   +      IR+ L+EN  + A++++P+ +F
Sbjct: 351 LFG--SSKAHQSIRKELIENHQLRAVISMPSGVF 382


>gi|317502417|ref|ZP_07960581.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090322|ref|ZP_08339206.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896155|gb|EFV18262.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401457|gb|EGG81042.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 489

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 112/270 (41%), Gaps = 46/270 (17%)

Query: 138 KNFSGIE-LHPDTVPDRVMS-NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           K  +G+E L  + + D  M  ++YE+++ +  S    GA  F TP+ +  +   L++   
Sbjct: 127 KVVAGLEDLFENDIKDLDMQGDLYEYMLGKLNSAGRLGA--FRTPKHIRDMMVKLMM--- 181

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-------E 248
                 +P M   + DP CGT GFL  +  ++     +         +G E        E
Sbjct: 182 -----PTPDM--KICDPACGTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDE 234

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                 C+  ML           ++  + +  ++SKD      +   L+NPPF       
Sbjct: 235 TMCRLSCMNLML--------HSVINPQLNKQDSVSKDYQVKDAYDLILANPPF------- 279

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K  + KE+ N  L      +   +   +LF+      L +    GGR A ++    LF  
Sbjct: 280 KGTINKENINESL----LAITNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLFG- 330

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            +      +R+ L+EN  +EA++++P+ +F
Sbjct: 331 -SSKAHKNLRKELIENQYLEAVISMPSGVF 359


>gi|225164186|ref|ZP_03726462.1| N-6 DNA methylase [Opitutaceae bacterium TAV2]
 gi|224801195|gb|EEG19515.1| N-6 DNA methylase [Opitutaceae bacterium TAV2]
          Length = 651

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 108/280 (38%), Gaps = 60/280 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V    YE ++   GS +     +F TPR++  +A A+L           PG  + + DP 
Sbjct: 288 VKGRAYEEIV---GSNLRGDRGEFFTPRNICQMAIAML----------DPGEHQLILDPC 334

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP-ETHAVCVAGMLIRRLESDPR--- 269
           CGTGGFL  AMNHV +     ++        + LEP        A   I  ++ +P    
Sbjct: 335 CGTGGFLITAMNHVIEKIRDAEVKKWKGKPERALEPIRARIQKFASKFIAGIDFNPELVK 394

Query: 270 ---------RDLSKNIQQGSTL------SKDL----FTGKRFHYCLSNPPFGKKWEKDKD 310
                     D +  + Q ++L      S DL      GK      +NPPFG K      
Sbjct: 395 ASKMNMVMNNDGAGGLFQANSLENPAVWSSDLRARNLMGK-VDLLFTNPPFGSKIPITDP 453

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN------------GGGRAAI 358
           A+ +++  G    +     K SD    ++M        PP              GGR AI
Sbjct: 454 AILEQYDLGHAWSYD----KTSD---RWMMQAGTVKSQPPEILFIERCVKFLRSGGRCAI 506

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           VL    L  G  G G   +R W+L +  I A + L  D F
Sbjct: 507 VLPDGIL--GSPGLG--YVREWILRHARILASIDLHPDTF 542


>gi|312899539|ref|ZP_07758868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|311293312|gb|EFQ71868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
          Length = 310

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 26/201 (12%)

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           L+K+ +  S    D     +    + NPP+   W   K+ +E+E        F    PK 
Sbjct: 47  LTKSTEFSSIEIVDEVPATKSETVIMNPPYSLPWNPLKEYLEQER----FSDFDVLAPK- 101

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+   ++L+      G  +I+L    LF G A   E +IR+ L+E +L++A++
Sbjct: 102 SKADYAFLLQGIHQLK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVI 154

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR---IINDDQ 448
            LP   F  T+I T L +L   +          +N   L+     E KK +   ++ D+ 
Sbjct: 155 GLPAKAFMNTDIPTVLLVLKKNR----------LNKDILFIDASKEFKKEKAWNVLEDEH 204

Query: 449 RRQILDIYVSREN-GKFSRML 468
             +IL+++ +R+   KFS ++
Sbjct: 205 VAKILEVFQARKAVDKFSSVV 225


>gi|225076445|ref|ZP_03719644.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens
           NRL30031/H210]
 gi|224952124|gb|EEG33333.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens
           NRL30031/H210]
          Length = 637

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 53/289 (18%)

Query: 178 MTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSH 233
           +TPR +V L   L+ + P D++F           DP CGT GFL  AM+H+    D  + 
Sbjct: 329 LTPRHIVELFCELIDIKPTDSVF-----------DPCCGTAGFLIAAMHHMLQKTDKEAE 377

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKR 291
            +       HG EL+P    +    M++       R D   N++Q   L ++      K 
Sbjct: 378 KRNIRKNQLHGIELQPYMFTIATTNMIL-------RGDGKSNLEQEDFLKQNPAQIQLKG 430

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  + NPP+ +                   +  P L +IS     F  HL + +     
Sbjct: 431 CNIGMMNPPYSQG-----------------SKANPNLYEIS-----FTEHLLDSI----T 464

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +++  S +  G+    E  I+  +L+   +E ++ L  + F+       + + S
Sbjct: 465 ADGKAIVIVPQSSM-TGKTKE-EQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFS 522

Query: 412 NRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                ++   V+ IN   D +   ++ G    +   D+++ +LD++  R
Sbjct: 523 TGIPHDKDKTVKFINFENDGFEVQKHIGLVETVSAKDKKQHLLDVWFGR 571


>gi|270643375|ref|ZP_06222163.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270317275|gb|EFA28841.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 189

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           K+  + ++NPPF    W  +  A +         R+  G P   + +  +L H+     L
Sbjct: 28  KKMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKGNANFAWLQHMI--YHL 77

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            PNG  + A++L++  +      + E EIR+ ++  DL+E +VALP  LF  T I   +W
Sbjct: 78  SPNG--KMALLLANGSM--NSQTNNEGEIRKGIINADLVECMVALPGQLFTNTQIPACIW 133

Query: 409 ILSNRKTEERRGKVQLINATDL 430
            L+  + ++R+G+V  I+A  +
Sbjct: 134 FLN--RNKKRKGEVLFIDARQI 153


>gi|126665393|ref|ZP_01736375.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
 gi|126630021|gb|EBA00637.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
          Length = 214

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 16/143 (11%)

Query: 323 RFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           RF P   L   S     F++H  + L    +  GRAAIV      + G A   E +IR++
Sbjct: 16  RFAPAGVLAPKSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQY 68

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L++N+ +E +++L  +LFF T IA  + +LS  K +      Q I+A+ L+    N    
Sbjct: 69  LVDNNYVETVISLAPNLFFGTTIAVTILVLSKHKIDT---TTQFIDASGLFKKDTNTNT- 124

Query: 441 RRIINDDQRRQILDIYVSRENGK 463
              + D    QI+ ++ S+ N +
Sbjct: 125 ---LTDAHIEQIMQVFDSKANAE 144


>gi|322804998|emb|CBZ02558.1| type I restriction-modification system,DNA-methyltransferase
           subunit M [Clostridium botulinum H04402 065]
          Length = 485

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 49/287 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            S  + ++    +L KI      +E+   DT  D     +YEHL+    +    G   F 
Sbjct: 110 MSDAMFKIPTPLMLSKIVDAIDNLEIEDKDTKGD-----LYEHLLSNISAAGMNGQ--FR 162

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++ +   L+        K +P  I  + DP  GT GFL     ++ +  S   +  
Sbjct: 163 TPRHIIKMMVELM--------KPTPEDI--IVDPAMGTAGFLVKLEEYLREKHSELFLVQ 212

Query: 239 ILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            L  H       G +++     +    M++  +++        NI+   +LS+     ++
Sbjct: 213 GLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVDN-------PNIEYKDSLSETNKDSEK 265

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF  K   D +AV  +            L K+S      L+ LA  L +   
Sbjct: 266 YTLVLANPPF--KGSLDYEAVSAD------------LLKVSKTKKTELLFLALFLRILKT 311

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GG R A ++    LF   +  G  +IRR + +N+ +EAI+++P+ +F
Sbjct: 312 GG-RCASIVPDGVLFG--STKGHKDIRREIADNNKLEAIISMPSGVF 355


>gi|197106985|ref|YP_002132362.1| type I restriction-modification system methyltransferase subunit
           [Phenylobacterium zucineum HLK1]
 gi|196480405|gb|ACG79933.1| type I restriction-modification system methyltransferase subunit
           [Phenylobacterium zucineum HLK1]
          Length = 825

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 98/261 (37%), Gaps = 59/261 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPT 213
           +  +YE   R  G         + TPR +  +   L  +  DD +            DP 
Sbjct: 283 LGQLYETFFRYTGGNT---IGQYFTPRHIARMMADLCGVGKDDVIL-----------DPA 328

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL   M+ +    +  ++  + V     +G E EP T A+CVA M++       R
Sbjct: 329 CGTGGFLIACMDRILHQHTISRVQMVKVVAKQLNGFESEPVTAALCVANMIL-------R 381

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            D S  I Q   L+   F        L+NPPF  K                         
Sbjct: 382 GDGSTGIHQADALTSPEFPAGLATVALTNPPFPHK------------------------- 416

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K    +  F+      L+     GGR A++L +S L     G   ++I    L+++ +  
Sbjct: 417 KTDTPAEAFVDRALEGLQT----GGRLAVILPTSTLVKQDKGGWRAQI----LKHNSLLG 468

Query: 390 IVALPTDLFFRTNIATYLWIL 410
           +  LP +LF     AT   +L
Sbjct: 469 VCQLPDELFQPFAAATTSVVL 489


>gi|42794862|gb|AAS45789.1| SLV.6 [Streptomyces lavendulae]
          Length = 814

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 50/314 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLY 210
           +++  N ++  I  +       + +F TP+ VV L  +L         + S G +  T+Y
Sbjct: 240 NQLGGNAFQLFIDAYEKHARLRSREFFTPQGVVRLMASL--------ARTSLGRVPHTVY 291

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESD 267
           DP    G FL ++   V D  S  +  P L P    G+  +P+   +    +++  +   
Sbjct: 292 DPYVRGGEFLAES---VTDSASILRSDPELAPVTVFGETTDPDPALLAGLNLVLLGVR-- 346

Query: 268 PRRDLSKN-----IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           PR  L        I+ G   + DL         L+NP F  K    +   E        G
Sbjct: 347 PRVRLVHKAPWAEIRDGEAPAADLV--------LTNPRFNMKDSAGEACRE--------G 390

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +  G P + + ++ ++ H    L      GGRAA+V+ +       A + E+ IRR ++
Sbjct: 391 TWAYGAPPVDNDNLAYVQHALASLR----AGGRAALVMPTK--AGNSASAAETAIRRAMV 444

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +  ++E ++A+P  LF  T +   +W+L  R  ++   +V  ++A  L   +R     R 
Sbjct: 445 QAGVVECVIAMPAKLFSGTAVPVSVWLL--RHPDDPCERVLFLDARHL--GVRQ--GPRC 498

Query: 443 IINDDQRRQILDIY 456
           ++ +D  + +L  Y
Sbjct: 499 VLKEDDVQAVLGTY 512


>gi|295110205|emb|CBL24158.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus obeum A2-162]
          Length = 500

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 48/255 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  ++YE+L+ +       G   F TPR ++ +   ++           P     + DP 
Sbjct: 154 VRGDVYEYLLSKIAQSGLNGQ--FRTPRHIIRMMVEMM----------DPSSDEVICDPA 201

Query: 214 CGTGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           CGT GFL  A  ++ +              H +  +   HG +++     +    M+   
Sbjct: 202 CGTSGFLVAAGEYLKEKRKEEIFFDKQKKDHYMNHMF--HGYDMDRTMLRIGAMNMMTHG 259

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           ++       +  I+   +LS       ++   L+NPPF       K +++ E  +G+L +
Sbjct: 260 ID-------NPFIEYRDSLSDQNQDKDKYSLILANPPF-------KGSLDAESVSGDLLK 305

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L++    GGR A ++    LF   +      IR+ ++E
Sbjct: 306 ----VCKTKKTELLFLALFLRMLKI----GGRCACIVPDGVLFG--SSKAHKSIRKEIVE 355

Query: 384 NDLIEAIVALPTDLF 398
           N  +EA++++P+ +F
Sbjct: 356 NQRLEAVISMPSGVF 370


>gi|296258260|gb|ADH04257.1| putative HsdM-type I modification subunit [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 165

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 22/163 (13%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            P   + + YE+LI +F S+  + A +F TP++V  L   L L   D     S GM  ++
Sbjct: 15  TPGDTLGDAYEYLISQFASKSGKKAGEFYTPQEVSELLARLTLVGKDY----SSGM--SV 68

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP  G+G  L +   +V +          +  +GQE+   T  +    M++  +     
Sbjct: 69  YDPAMGSGSLLLNFRKYVPNSSR-------ITYYGQEINTSTFNLARMNMILHHV----- 116

Query: 270 RDLS-KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDK 309
            DL+ + ++ G TL +D    +   F   + NPP+  KW  DK
Sbjct: 117 -DLANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADK 158


>gi|251793527|ref|YP_003008256.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700]
 gi|247534923|gb|ACS98169.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700]
          Length = 637

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 132/329 (40%), Gaps = 65/329 (19%)

Query: 150 VPDRVMSNIY------EHLIRRFGSEVSEGAED------FMTPRDVVHLATALL-LDPDD 196
           + DR+  NI       ++L R +G  +S    D       +TPR +V L   L+ + P D
Sbjct: 289 IYDRIYKNIKYIHSAEDYLGRFYGEFMSYSGGDGQTLGIVLTPRHIVELFCELIDIKPTD 348

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHA 253
           ++F           DP CGT GFL  AM+H+    D     +       HG EL+P    
Sbjct: 349 SVF-----------DPCCGTAGFLIAAMHHMLQKTDKEDEKRNIRKNQLHGIELQPYMFT 397

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDA 311
           +    M++       R D   N++Q   L ++      K  +  + NPP+ +        
Sbjct: 398 IATTNMIL-------RGDGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQG------- 443

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      +  P L +IS     F  HL + L       G+A +++  S +  G+  
Sbjct: 444 ----------SKANPNLYEIS-----FTEHLLDSL----TEDGKAIVIVPQSSM-TGKTK 483

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDL 430
             E  I+  +L+   +E ++ L  + F+       + + +     ++   V+ IN   D 
Sbjct: 484 E-EQSIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFTTGIPHDKDKIVKFINFENDG 542

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +   ++ G    +   D+++ +LD++  R
Sbjct: 543 FEVQKHIGLVETVSAKDKKQHLLDVWFGR 571


>gi|300925836|ref|ZP_07141684.1| N-6 DNA Methylase [Escherichia coli MS 182-1]
 gi|300418088|gb|EFK01399.1| N-6 DNA Methylase [Escherichia coli MS 182-1]
          Length = 544

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADC 230
            ++     ++        + +P    T+ DP CGTGGFL  +  ++            + 
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 231 GSHHK---------IPPILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G++ +            +L P          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|331678991|ref|ZP_08379663.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
 gi|331073056|gb|EGI44379.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
          Length = 544

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADC 230
            ++     ++        + +P    T+ DP CGTGGFL  +  ++            + 
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 231 GSHHK---------IPPILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G++ +            +L P          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|312965802|ref|ZP_07780028.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75]
 gi|312289045|gb|EFR16939.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75]
          Length = 544

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 132/324 (40%), Gaps = 73/324 (22%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +E+    D
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEAP---D 277

Query: 272 LSKNIQQGSTLSKDLFTGKR--FHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +        + SK+     +  F+  L+NPPF G   E+D D+                +
Sbjct: 278 IHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AM 325

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +E
Sbjct: 326 VKTKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLE 379

Query: 389 AIVALPTDLFF-RTNIATYLWILS 411
           A++ LP+ +F     +AT + I +
Sbjct: 380 AVINLPSGVFKPYAGVATAILIFT 403


>gi|269125657|ref|YP_003299027.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268310615|gb|ACY96989.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 698

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 37/235 (15%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP CG G  L  A  H A   +           GQ+  P    V      +R L + P
Sbjct: 200 VLDPACGGGTLLAAAARHGATFLA-----------GQDSLP----VQARRSTVRLLLAAP 244

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             +++  +++G +L  D F+G      L NPP+G + W  D+ A +         R+  G
Sbjct: 245 EAEVT--VREGDSLRADAFSGVTVDGVLCNPPYGDRDWGHDELAYDP--------RWAYG 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  ++  + ++ H    LE     GG A ++L   P    R  S    +R  LL    +
Sbjct: 295 LPARAESELAWVQHALAHLEP----GGLAVMLL--PPAVAAR--SSGRRVRGALLRGGAV 346

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            A++ALP       +I  ++W+L  ++ + + G  + +   D   ++   G++RR
Sbjct: 347 RAVIALPPGAAVPLHIGLHVWVL--QRPDPKAGPPEAVLFVDT-AAVPESGRERR 398


>gi|194451585|ref|YP_002048347.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194409889|gb|ACF70108.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 544

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|308272577|emb|CBX29181.1| Probable type I restriction enzyme BthVORF4518P M protein
           [uncultured Desulfobacterium sp.]
          Length = 272

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 288 TGKRFHYCLSNPPFGKK----WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           TG R  Y L+NPPFGKK    +  +K   EKE        F       S+  + F+ H+ 
Sbjct: 27  TGLRVDYVLTNPPFGKKSSMTFTNEKGEQEKEDLTYNRQDF---WATTSNKQLNFVQHIR 83

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+     GG+AA+VL  + LF G  G+GE+ +R+ LLE   +  I+ LPT +F+   +
Sbjct: 84  TMLKT----GGKAAVVLPDNVLFEG--GAGET-VRKKLLETTDLHTILRLPTGIFYAQGV 136

Query: 404 ATYLWILSNR 413
              +    N+
Sbjct: 137 KANVLFFDNK 146


>gi|307312949|ref|ZP_07592577.1| N-6 DNA methylase [Escherichia coli W]
 gi|306907117|gb|EFN37624.1| N-6 DNA methylase [Escherichia coli W]
 gi|315063582|gb|ADT77909.1| N-6 DNA methylase [Escherichia coli W]
 gi|323380337|gb|ADX52605.1| N-6 DNA methylase [Escherichia coli KO11]
          Length = 544

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +E+ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|227892124|ref|ZP_04009929.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227866056|gb|EEJ73477.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 463

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 48/303 (15%)

Query: 171 SEGAEDFM--TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           S GA+D    T +++  L T L+    + +         ++YDP  GT   L   +N  A
Sbjct: 144 SSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTASLLL-GINRAA 193

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              + +        +GQE+  +   + +   +I  +  D         +  +TL+ +   
Sbjct: 194 LKENKY--------YGQEINTQVIKIAIMNAIINDVADDKFE-----FKNANTLANNWEF 240

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           GK     +S+PP   KW  DK+ + ++ +  + G     LP  +D    F++   NKL  
Sbjct: 241 GKA-DIVVSDPPMSMKWNIDKN-LSQDKRYQDYG----DLPNRADWG--FILDGINKL-- 290

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  G   + +    LF G   + E  IRR LLE+  I A++ LP +    T IAT L 
Sbjct: 291 --SDDGMMVVSVVQGTLFRG---AKEYNIRRKLLEDGKIRAVIQLPGNTKISTTIATCLL 345

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           +L  RK+ E +  V  INA+  +     E     I+ +    +I+DI+  ++  K FS +
Sbjct: 346 VL--RKSSEDKD-VFFINASQEYEKKGLEN----ILTEANIDKIVDIFNEKKEEKGFSHV 398

Query: 468 LDY 470
             Y
Sbjct: 399 ASY 401


>gi|325911636|ref|ZP_08174044.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 143-D]
 gi|325476622|gb|EGC79780.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 143-D]
          Length = 542

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 142/333 (42%), Gaps = 59/333 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ + +       ++ TP  +  +   LL+  +  L          +YDP+ GTG
Sbjct: 184 IFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNTDLHD------IEVYDPSAGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L           SH           Q++   ++ +    +++  L S     +     
Sbjct: 238 TLLI--------ALSHQIGQDRCTIFAQDISQRSNKMLKLNLILNGLVSSLDHAV----- 284

Query: 278 QGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG----RFGPG 327
           QG TL      S D    ++F Y +SNPPF   +  +++         EL     RF  G
Sbjct: 285 QGDTLTHPYHKSNDGKELRQFDYVVSNPPFKMDFSDNRE---------ELASMPVRFWGG 335

Query: 328 LPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +PKI            LF+ H+ N ++      G+ AIV+ +   F       E+++  +
Sbjct: 336 VPKIPAKKKEKMAIYTLFIQHVINSIK----SNGKGAIVVPTG--FLTVKKGVENKVLHY 389

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +++  +I   +++P+++F   N  T + +L   K++E   KV LI+A+ +    ++   +
Sbjct: 390 MVDKKIIRGAISMPSNVF--ANTGTNVSVLFFDKSQE-HDKVVLIDASKMGEEYKDGNNQ 446

Query: 441 RRIINDDQRRQILDIYVSREN---GKFSRMLDY 470
           +  +  ++  QI  ++  R+N     FS ++ Y
Sbjct: 447 KCRLRPNEIDQI--VHAFRDNKAIDNFSVVVSY 477


>gi|253578028|ref|ZP_04855300.1| type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850346|gb|EES78304.1| type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. 5_1_39BFAA]
          Length = 510

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 48/252 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ +   ++           P     + DP CGT
Sbjct: 166 DVYEYLLSKLATAGVNGQ--FRTPRHIIRMMVEMM----------DPKADEIICDPACGT 213

Query: 217 GGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            GFL  A  ++ D              H +  +   HG +++     +    M+   +E 
Sbjct: 214 SGFLVAASEYLRDKKKQEVLFNRQNKEHYMNHMF--HGYDMDRTMLRIGAMNMMTHGVE- 270

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  I+   +LS      +++   L+NPPF  K   D D V     + +L +   
Sbjct: 271 ------NPYIEYRDSLSDQNTDKEKYSLILANPPF--KGSLDYDIV-----SADLLK--- 314

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LFL      L++    GGR A ++    LF   + +    IR+ L+E + 
Sbjct: 315 -VCKTKKTELLFLALFIRMLKI----GGRCACIVPDGVLFG--SSTAHKAIRKALVEENR 367

Query: 387 IEAIVALPTDLF 398
           +EA++++P+ +F
Sbjct: 368 LEAVISMPSGVF 379


>gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
 gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
          Length = 842

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 45/305 (14%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATAL--LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           F    S+   +F TP+DV  L T L    +PD            ++ DP  G G   + A
Sbjct: 137 FAENESKSGGEFYTPQDVNWLVTRLGAEYEPD------------SVCDPFAGAG---STA 181

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            +  +  G++  I        QE+  + H   V   +++        D+      G +LS
Sbjct: 182 FSFDSALGTYFNIDT------QEVNRDAHFQIVVSRIVK--------DVYGKDYLGDSLS 227

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +  +++    S PPFG K  K       E +          LP+      + L  L 
Sbjct: 228 TPYYQSQQYDLVASFPPFGMKIPKSNRRQILERRGNYWLEQAYNLPESRSDWFVTLSML- 286

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
                 P    +  ++   S     R+G+ E++IR +L+    IE ++ LP +++  T+I
Sbjct: 287 ------PALNKKGKLITGMSLASMTRSGA-ETKIRSFLVAQGNIEKVILLPKNIYHSTSI 339

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           ++ L +L+N+   E+R  +Q ++A+  +   R     R  ++ D   +I+   +S  +G+
Sbjct: 340 SSVLLVLNNKSDGEKRRDIQFVDASLFYQPARG----RNTLSFDNIEKIVASCLS--DGR 393

Query: 464 FSRML 468
           FS+ +
Sbjct: 394 FSKTI 398


>gi|309810115|ref|ZP_07703961.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169614|gb|EFO71661.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D]
          Length = 462

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 142/333 (42%), Gaps = 59/333 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+LI+ + +       ++ TP  +  +   LL+  +  L          +YDP+ GTG
Sbjct: 104 IFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNTDLHDIE------VYDPSAGTG 157

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L           SH           Q++   ++ +    +++  L S     +     
Sbjct: 158 TLLI--------ALSHQIGQDRCTIFAQDISQRSNKMLKLNLILNGLVSSLDHAV----- 204

Query: 278 QGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG----RFGPG 327
           QG TL      S D    ++F Y +SNPPF   +  +++         EL     RF  G
Sbjct: 205 QGDTLTHPYHKSNDGKELRQFDYVVSNPPFKMDFSDNRE---------ELASMPVRFWGG 255

Query: 328 LPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +PKI            LF+ H+ N ++      G+ AIV+ +   F       E+++  +
Sbjct: 256 VPKIPAKKKEKMAIYTLFIQHVINSIK----SNGKGAIVVPTG--FLTVKKGVENKVLHY 309

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +++  +I   +++P+++F   N  T + +L   K++E   KV LI+A+ +    ++   +
Sbjct: 310 MVDKKIIRGAISMPSNVF--ANTGTNVSVLFFDKSQE-HDKVVLIDASKMGEEYKDGNNQ 366

Query: 441 RRIINDDQRRQILDIYVSREN---GKFSRMLDY 470
           +  +  ++  QI  ++  R+N     FS ++ Y
Sbjct: 367 KCRLRPNEIDQI--VHAFRDNKAIDNFSVVVSY 397


>gi|313114695|ref|ZP_07800197.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622920|gb|EFQ06373.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 510

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 45/274 (16%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L KI      +  H D     +  ++YE+++ +  +    G   F TP  ++ +   L+
Sbjct: 147 VLQKIITGLEDLYTH-DIADLDMQGDLYEYMLGKLATAGRNG--QFRTPLHIIDMMVELV 203

Query: 192 L-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAM----NHVADCGSHHKIPPILVPHGQE 246
              PDD +            DP CGT GFL  +      H  D  +  +      P    
Sbjct: 204 QPTPDDFI-----------CDPACGTAGFLVSSAKYVRKHYGDDMTPEQWQHFAGPMFTG 252

Query: 247 LEPETHAVCVAGM-LIRRLESDPRRDLSKNI-QQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            + +   + ++ M L+    ++P  D   ++ +Q S  SK       +  CL+NPPF   
Sbjct: 253 FDTDRTMLRISAMNLMLHSITNPEIDYKDSVSKQNSICSK-------YTVCLANPPF--- 302

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K  V+ E  N +L      +       +LFL      L+     GGR A ++    
Sbjct: 303 ----KGTVDAESINDDL----KAVTNTKKTELLFLALFLRMLKT----GGRCACIVPDGV 350

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           LF   +      IR+ L+EN  + A++++P+ +F
Sbjct: 351 LFG--SSKAHQSIRKELIENHQLRAVISMPSGVF 382


>gi|283782192|ref|YP_003372947.1| N-6 DNA methylase [Pirellula staleyi DSM 6068]
 gi|283440645|gb|ADB19087.1| N-6 DNA methylase [Pirellula staleyi DSM 6068]
          Length = 554

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 72/298 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    S    G   F TPR ++ L + L+          +P +   + DP 
Sbjct: 194 IQGDVYEMLLNEISSAGKNG--QFRTPRHIIKLISELV----------NPQLGHRICDPA 241

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA---VCVAGMLIRRLESDPRR 270
           CGT GFL DA  ++    +  K+        Q+ EP+        V+G L +  +    +
Sbjct: 242 CGTAGFLLDAYQYIVTQLARKKVKK------QKFEPDEDGFIRTSVSGQLDQNKKDILEQ 295

Query: 271 DL-----------------------SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            L                       + ++    TLSK       +   ++NPPF    +K
Sbjct: 296 SLYGFDFDSTMVRLALMNLMMHGIDNPHVDYQDTLSKSFTEEMEYDIVMANPPFTGSIDK 355

Query: 308 DKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                         G    GL  K +   +LF   +   L+     GG A I++    LF
Sbjct: 356 --------------GDINEGLTLKTTKTELLFTERIFTLLK----KGGTAGIIVPQGVLF 397

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQ 423
            G AG+   E R+ L+E   ++A+++LP+ +F     +AT + + +      R GK Q
Sbjct: 398 -GAAGAF-VEARKKLVEEAELKAVISLPSGVFKPYAGVATAILVFT------RSGKTQ 447


>gi|46487195|gb|AAS98975.1| Tgh014 [Campylobacter jejuni]
          Length = 154

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 8/82 (9%)

Query: 591 ENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
           E +P   +IQ Y+  EV P+V +++I          E   VGYEI F+++FY Y P RKL
Sbjct: 80  EKIPLKTNIQGYYDTEVKPYVANSWIAW--------ESASVGYEILFSKYFYTYTPPRKL 131

Query: 651 QDIDAELKGVEAQIATLLEEMA 672
           ++I+ EL+ +E ++  LL E+ 
Sbjct: 132 EEINNELEKLEKEVQDLLREIV 153


>gi|71897759|ref|ZP_00679985.1| N-6 DNA methylase [Xylella fastidiosa Ann-1]
 gi|71732314|gb|EAO34368.1| N-6 DNA methylase [Xylella fastidiosa Ann-1]
          Length = 222

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 7/110 (6%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           GRAA+VL +  +        E +   IR+W ++ DLI+ ++ LP +LF+ T  A  + +L
Sbjct: 45  GRAAVVLDTGAVTRSSGSKNEDKERSIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVL 104

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           + RK+  R+ K+ L+NA+  +     +GK +  + ++  + +  +Y+  E
Sbjct: 105 NKRKSAARKDKIVLLNASRRY----KKGKPKNYLPEEDVQSLAAMYLKGE 150


>gi|60680961|ref|YP_211105.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC
           9343]
 gi|60492395|emb|CAH07164.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC
           9343]
          Length = 506

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 51/315 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSE 169
           AK+I ++  F+     ++   LL ++    + IE   D   DR    +IYE +++   S 
Sbjct: 109 AKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF--DDADDRHTFGDIYEGILKDLQSA 165

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--- 226
            + G  +F TPR +      +L           P +  T  D T GTGGFLT A+N+   
Sbjct: 166 GNAG--EFYTPRALTDFIVMML----------DPKLGETFGDFTSGTGGFLTSALNYMGK 213

Query: 227 -VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V       K+   +V  GQE +P  + + +  +L+  +E       + NI    +L  +
Sbjct: 214 SVRSAEDGEKLQNAVV--GQEWKPLPYLLSITNLLLHDIE-------APNIANCDSLGTN 264

Query: 286 LFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           +   K   +      NPP+G        + E   KN    R+     + S+ + LF+  +
Sbjct: 265 VTDFKETDKVDVIGMNPPYG-------GSTEDSVKNNFPLRY-----RSSETADLFIALI 312

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RT 401
             +L+     GGR  +++    LF G  G+ +  ++  LL    +  I+ LP  +F   T
Sbjct: 313 MYRLK----AGGRCGVIIPDGFLF-GTDGA-KLALKENLLRKFNLHTIIRLPGSIFSPYT 366

Query: 402 NIATYLWILSNRKTE 416
           +IAT +   +N + E
Sbjct: 367 SIATNILFFNNEEAE 381


>gi|209523415|ref|ZP_03271970.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209496157|gb|EDZ96457.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 507

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 44/259 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +   +YD  C
Sbjct: 157 LSHLYETKIKNMGNAGRNGGE-YYTPRPLIRAMIRVV----------KPKIGDRIYDGAC 205

Query: 215 GTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+ GFL ++ +++          ++       G+E +   + + +  +++  ++      
Sbjct: 206 GSAGFLCESYDYLRQGKLTTQQLRLLQTGTLFGKEKKSLAYVIAIMNLILHGID------ 259

Query: 272 LSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            + NI   +TL++   D+    RF+  L+NPPFG    K            E+ +  P  
Sbjct: 260 -APNIIHTNTLAENLSDIQEKDRFNVVLANPPFGGNERK------------EVQQNFP-- 304

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K  + + LFL H    L++    GGRA IV+ ++ L N    S    +R+ LL +  + 
Sbjct: 305 VKTGETAFLFLQHFIKILKV----GGRAGIVIKNTFLSNSDNAS--RALRQQLLSDCNLH 358

Query: 389 AIVALPTDLFFRTNIATYL 407
            I+  P   F    + T +
Sbjct: 359 TILDCPGGTFIGAGVKTVV 377


>gi|145221399|ref|YP_001132077.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145213885|gb|ABP43289.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 484

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 42/249 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  S    G   F TPR ++ L   +           +P     + DP  GT
Sbjct: 141 DLYEYLLSKIASAGVNG--QFRTPRHIIKLMVDM----------TAPTPADEICDPAAGT 188

Query: 217 GGFLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++ +        G+  K     + HG + +     +    ML+  +ES P 
Sbjct: 189 AGFLVAASEYIREQHPSVLTDGAKRKHFHASMFHGYDFDNTMLRIASMNMLMHGIES-PD 247

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                ++ +G++   + +T       L+NPPF         +++ E  + +L R    + 
Sbjct: 248 IRYRDSLSEGASDDAEKYT-----LILANPPFAG-------SLDYESTSKDLQR----VV 291

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LF+  L  KL  P   GGRAA+++    LF   +     ++RR L+E+  ++ 
Sbjct: 292 KTKKTELLFVA-LFLKLLKP---GGRAAVIVPDGVLFG--SSKAHKDLRRMLVEDQKLDG 345

Query: 390 IVALPTDLF 398
           IV LP+ +F
Sbjct: 346 IVKLPSGVF 354


>gi|328947486|ref|YP_004364823.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
 gi|328447810|gb|AEB13526.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
          Length = 500

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 121/279 (43%), Gaps = 57/279 (20%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  S G  +F TPR V      ++           P +  T+ D  CGTG
Sbjct: 151 IYETILKELQSAGSAG--EFYTPRAVTQFMAKMI----------KPQIGETMADFACGTG 198

Query: 218 GFLT----------DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           GFL+          DA   +++  S      I     ++     + +CV  ML+  L+S 
Sbjct: 199 GFLSSWIKELEEVKDAKGSISNEESEKIYNSIYAVEKKQF---PYMLCVTNMLLHGLDS- 254

Query: 268 PRRDLSKNIQQGSTLSKDL--FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           P+      +  G++L   L  +T K  F   L NPP+G     +KD +++          
Sbjct: 255 PK------VYHGNSLIYKLLDYTQKDAFDVILMNPPYGG---SEKDDIKQNF-------- 297

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P   + S+ + LF+  +  +L+      GRAA+++    LF     + ++ +++ LL +
Sbjct: 298 -PADLRSSETADLFMAVIMYRLK----KNGRAAVIVPDGFLFGN--DNAKNNLKKKLLTD 350

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKV 422
             +  IV LP  +F   T+I T +   +N   EE  GK 
Sbjct: 351 FNLHTIVRLPGSVFSPYTSITTNILFFNN---EEPTGKT 386


>gi|295111478|emb|CBL28228.1| Type I restriction-modification system methyltransferase subunit
           [Synergistetes bacterium SGP1]
          Length = 825

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 133/335 (39%), Gaps = 81/335 (24%)

Query: 152 DRVMSNI-----YEHLIRRF-GSEVSEGAED------FMTPRDVVHLATALLLDPDDALF 199
           DRV  NI      E  I RF G  +S    D       +TPR +    T L+ D  D   
Sbjct: 293 DRVFRNIKYQKTSEDFIGRFYGEFMSYSGGDGQTLGIILTPRHI----TDLMCDLVDVQV 348

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +       + DPTCGT GFL  AM+    ++D  +  K       HG EL+    AV  
Sbjct: 349 ND------VVLDPTCGTAGFLISAMHKMLSMSDSDAQRKDIKKKQLHGFELQSNMFAVAA 402

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           A M++       R D + N++    L K+      K     L NPP+ +  + D    E 
Sbjct: 403 ANMIL-------RHDGNSNLECTDFLKKNPAQVQMKGATIGLMNPPYSQGTKADPSQYE- 454

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                                + F+ HL + L      GGRAA+++  S +  G++   E
Sbjct: 455 ---------------------LSFVEHLLDSL----TEGGRAAVIVPQSSM-TGKSAE-E 487

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
              +  +L+N  +E ++   T+ F+   TN    L+       E++  K         + 
Sbjct: 488 KVFKESILKNHTLEGVITCNTETFYGVGTNPVIALFTAHEPHPEDKVCK---------FI 538

Query: 433 SIRNEGKKRR-----IIND---DQRRQILDIYVSR 459
             RN+G + R     +  D   D+++ +LD++  R
Sbjct: 539 DFRNDGFETRAHVGLVEGDSAKDKKQHLLDVWNGR 573


>gi|94266804|ref|ZP_01290468.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93452526|gb|EAT03115.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 51/254 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE +++   S  + G  +F TPR V                +  P +  T+ DP C
Sbjct: 144 LGGVYEQILKDLQSAGNAG--EFYTPRAVTRFMVN----------RVDPKLRETVMDPAC 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPP----ILVPH--GQELEPETHAVCVAGMLIRRLESDP 268
           GTGGFLT A+ H      H+   P    IL     G E +   H + V  +++  +E+  
Sbjct: 192 GTGGFLTCAIEHKR---KHYVKTPQDEEILQRSILGVEKKSLPHLLAVTNLILHGIETPD 248

Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           R      I+  + L++ L +    +R    ++NPPFG     ++D +E         R  
Sbjct: 249 R------IKHDNALARPLISWSPKERVEVIVANPPFGG---MEEDGIETNFPQAFRTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEN 384
               + +D  +   +HL     L P   GRAA+VL    LF    G G ++ ++  LL  
Sbjct: 298 ----ETADLFLTLFIHL-----LKPR--GRAAVVLPDGFLF----GEGMKTRLKEKLLAE 342

Query: 385 DLIEAIVALPTDLF 398
             +  IV LP  +F
Sbjct: 343 CNLHTIVRLPNGVF 356


>gi|72384681|gb|AAZ67632.1| DNA-methyltransferase putative [Haemophilus parasuis 29755]
          Length = 416

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 33/213 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + +F     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 231 ILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML----------EPYKGR-IYDPA 279

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       + +   +     I    GQE  P T  +    M IR +E D  +   
Sbjct: 280 MGSGGFFVQTERFIREHQGNVSEVSIF---GQEFNPTTWKLAAMNMAIRGIEFDFGKG-- 334

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  T S      K+  + ++NPPF  K W  +  A +         R+  G+P   
Sbjct: 335 ----NADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDP--------RWQYGIPPEG 382

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           + +  +L H+     L PN  GR A++L++  +
Sbjct: 383 NANFAWLQHMI--YHLSPN--GRMALLLANGSM 411


>gi|295101714|emb|CBK99259.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 510

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 109/273 (39%), Gaps = 43/273 (15%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L KI      +  H D     +  ++YE+++ +  +    G   F TP+ +  +   L+
Sbjct: 147 VLQKIITELDDLYEH-DIADLDMQGDLYEYMLGKLATAGQNGQ--FRTPKHIREMMVELV 203

Query: 192 L-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAM----NHVADCGSHHKIPPILVPHGQE 246
              PDD           T+ DP CGT GFL  A     NH  D  +  +           
Sbjct: 204 QPTPDD-----------TICDPACGTAGFLVSAAEYIRNHYEDTMTSEQWEHFAGDAFTG 252

Query: 247 LEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            + +   + ++ M L+    S P  D   ++ + + +S       +F  CL+NPPF    
Sbjct: 253 FDTDRTMLRISAMNLMLHSISHPEIDYKDSVSKQNQIS------DKFTMCLANPPF---- 302

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
              K  V+ E  N  L      +       +LFL      L+      G+ A ++    L
Sbjct: 303 ---KGTVDAESINDNL----KAVTNTKKTELLFLALFLRMLK----KSGQCACIVPDGVL 351

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           F   +      IR+ L+EN  + A++++P+ +F
Sbjct: 352 FG--SSKAHKAIRKELVENHQLRAVISMPSGVF 382


>gi|300956332|ref|ZP_07168630.1| N-6 DNA Methylase [Escherichia coli MS 175-1]
 gi|300316844|gb|EFJ66628.1| N-6 DNA Methylase [Escherichia coli MS 175-1]
          Length = 154

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 13/109 (11%)

Query: 292 FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F    +NPPF   KW  D      E +N + GRF  G+P  + G   F+ H+   L+   
Sbjct: 49  FDIVTANPPFSLDKWGHD------EAENDKFGRFRRGVPPKTKGDYAFISHMIETLK--- 99

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+
Sbjct: 100 PGTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFY 145


>gi|190150799|ref|YP_001969324.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307264082|ref|ZP_07545679.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915930|gb|ACE62182.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870560|gb|EFN02307.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 489

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 43/262 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V      ++           P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMAKMI----------KPRLGEKIADFACGT 196

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GGFLT A+  +           +L    +G E +   H +C+  +L+  ++       + 
Sbjct: 197 GGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NP 249

Query: 275 NIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           N+   +TL    KD     +F   L NPP+G         +E+   N       P   + 
Sbjct: 250 NVHHDNTLEKPVKDYTENDKFDVILMNPPYGGS------EIEQIKTN------FPSALRS 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++
Sbjct: 298 SETADLFMSVIMYRLK----KNGRVAIVLPDGFLFG--TDNAKMAIKQKLMSEMNLHTVI 351

Query: 392 ALPTDLFF-RTNIATYLWILSN 412
            LP  +F   T+I T +    N
Sbjct: 352 RLPHSVFAPYTSITTNILFFDN 373


>gi|260061351|ref|YP_003194431.1| type I restriction-modification system, M subunit [Robiginitalea
           biformata HTCC2501]
 gi|88785483|gb|EAR16652.1| type I restriction-modification system, M subunit [Robiginitalea
           biformata HTCC2501]
          Length = 894

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 34/181 (18%)

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           HGQE++  T AV        RL++  + + S   +  S LS       R+   +SNPPFG
Sbjct: 192 HGQEIDDLTWAVTTL-----RLDAHDKLNNSSFEKVDSFLSWP--NTNRYDLIISNPPFG 244

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +  K +   EK++K  E      G+  ++D G M+ ++         PNG         
Sbjct: 245 LRLGKHQQTTEKKYKTVEQFLLTQGIELLTDCGKMIAIV---------PNG--------- 286

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              L   ++  G   +R+ L+E DL+EA+++ P  LF ++N    + ++S  KT+ER G 
Sbjct: 287 ---LLYSKSNKG---VRQRLIEEDLVEAVISFPGGLFLQSNSPFSVIVIS--KTKERPGS 338

Query: 422 V 422
           V
Sbjct: 339 V 339


>gi|226329604|ref|ZP_03805122.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198]
 gi|225202790|gb|EEG85144.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198]
          Length = 396

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 166/426 (38%), Gaps = 92/426 (21%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           LA  IW++A  +    +  ++   IL F   + L   L   +   +E   A    N++ E
Sbjct: 6   LAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQL--VQFVTKEGMTAEDIKNLNEE 63

Query: 71  SFVKVAGYSFYNTSEYSLSTLG--------------------STNTRNNLESYIASFSDN 110
                      +T +Y  S LG                     +N R+ L ++    S  
Sbjct: 64  DT---------DTVQYVQSNLGYFIAYDNLFSTWVDPKFEFDESNVRDALSAFSRLISPT 114

Query: 111 AKAIFEDF--DFSSTIARL-EKAGLLYKICKNF----SGIELHPDTVPDRVMSNIYEHLI 163
            K +FE       + +++L E AG   K   +       I ++ +   D V+  IYE+LI
Sbjct: 115 YKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNANQGYD-VLGYIYEYLI 173

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATAL----LLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +F +   + A +F TP +V  L + +    L D D+            +YDPT G+G  
Sbjct: 174 EKFAANAGKKAGEFYTPHEVSVLMSNIVAHALKDKDNI----------EIYDPTSGSGSL 223

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES--------DPRRD 271
           L +    V     + K    +  + QEL+  T+ +    +++R +++        D   D
Sbjct: 224 LINIGEAVQ---KYAKNKDSVTYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLED 280

Query: 272 ----LSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                 +N  QGS  TL  D          +SNPP+ + WE    + +  +      RF 
Sbjct: 281 DWPYFDENDPQGSYETLYVDA--------VVSNPPYSQNWEPTDKSNDPRY-----SRF- 326

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GL   +     FL+H  +   L PN  G   IV     LF    G  E +IR+ + +  
Sbjct: 327 -GLAPKTKADFAFLLH--DLYHLKPN--GIMTIVSPHGVLFR---GGEEGKIRKLMTKLS 378

Query: 386 LIEAIV 391
            + AI+
Sbjct: 379 QLSAII 384


>gi|218282513|ref|ZP_03488763.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989]
 gi|218216500|gb|EEC90038.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989]
          Length = 507

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 118/285 (41%), Gaps = 45/285 (15%)

Query: 123 TIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            I ++  A +L K+  +   I  L   T    +  ++YE+L+ +  S    G   F TPR
Sbjct: 122 AIFKIPTALVLSKVIDSLDEIYSLMDKTTSMDIRGDVYEYLLSKIASAGRNGQ--FRTPR 179

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKI 236
            ++ +   L+          +P     + DP CGT GFL  A +++      D   + + 
Sbjct: 180 HIIRMMVELM----------NPTPQELICDPACGTSGFLVVASDYLMEKYRNDILMNKQN 229

Query: 237 PPILVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               + H   G +++     +    M+   +E       S NI+   +LS       ++ 
Sbjct: 230 RDHFMNHMFNGFDMDRTMLRIGAMNMMTHGVE-------SPNIEYRDSLSDQNTDNNKYS 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPF  K   D D+V  +            + K     +LFL      L++    G
Sbjct: 283 MILANPPF--KGSLDYDSVSTDLLK---------IAKTKKTELLFLALFIRMLKV----G 327

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GR A ++    LF   +      IR+ +++++ + A++++P+ +F
Sbjct: 328 GRCACIVPDGVLFG--SSKAHKAIRQAIVDDNRLVAVISMPSGVF 370


>gi|119356723|ref|YP_911367.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354072|gb|ABL64943.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 834

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 49/254 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++    A+L DP     KE       + DP C
Sbjct: 135 LGDAFEYLLSVLGSQGDAG--QFRTPRHIIDFMVAVL-DPK----KE-----EKILDPAC 182

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  H+    +      +L P          +G ++ P+   + +  + +   
Sbjct: 183 GTAGFLISAYKHILRANTDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLHGF 242

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +DP      +I +  TL+      +     L+NPPF       K  + K HK   +   
Sbjct: 243 -ADP------HIDEYDTLTSLDKWNEHADVILANPPF----MSPKGGI-KPHKRFSI--- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                + +   +LF+ ++A  L+  PN  GRA I++    +F  ++G+    +R+ L++ 
Sbjct: 288 -----QATRSEVLFVDYMAEHLK--PN--GRAGIIVPEGIIF--QSGTAYKSLRKMLVDT 336

Query: 385 DLIEAIVALPTDLF 398
            L+ A+++LP  +F
Sbjct: 337 GLV-AVISLPAGVF 349


>gi|21228806|ref|NP_634728.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907325|gb|AAM32400.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 474

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 42/252 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V +  +E L+ +  SE  +GA  + TPR V+         PD    ++      ++ DP 
Sbjct: 116 VKAMAFEGLLEKAASEGKKGAGQYFTPRIVIQ-TIVRCTKPDPRNHRDF-----SIMDPA 169

Query: 214 CGTGGFLTDA---MNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  A   +  V   G+  +     + +    GQEL      + +  + +  +E 
Sbjct: 170 CGTGGFLVCAYEWLKAVTGGGALERDLAKKIRYSTYFGQELVERPRRLALMNLYLHGIEP 229

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +        I+ G ++  ++   K+F   L+NPPFG K        E             
Sbjct: 230 E--------IKLGDSIY-EIPESKKFDVVLTNPPFGTKGANQAPVRED------------ 268

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + + S+  + F+ H+   L+     GGRAAIV+  + LF  +AG    E+ + L E+  
Sbjct: 269 FVIETSNKQLNFIQHVMTILK----PGGRAAIVVPDNVLFADQAG----EVFKVLCEDCD 320

Query: 387 IEAIVALPTDLF 398
           +  ++ LP   F
Sbjct: 321 LHTVLRLPDGTF 332


>gi|254410592|ref|ZP_05024371.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182798|gb|EDX77783.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC
           7420]
          Length = 86

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 8/77 (10%)

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           + I +YF+ EV PHV DA++D            ++GYEI+FN++FY++QP R L+++  +
Sbjct: 14  QQIHEYFLEEVRPHVEDAWLDL--------SKTQIGYEISFNKYFYKHQPLRSLEEVTRD 65

Query: 657 LKGVEAQIATLLEEMAT 673
           +  +E +   LL ++ +
Sbjct: 66  ILELEQETEGLLRQLVS 82


>gi|121608004|ref|YP_995811.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121552644|gb|ABM56793.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 485

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 119/290 (41%), Gaps = 45/290 (15%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +++FED         ++   LL ++    +GI+ +  +   +  +++YE +++   S  
Sbjct: 107 VRSVFED-----AYNCMKSGHLLRQVVNKINGIDFNRQSERHQ-FNDLYEKILKDLQSAG 160

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           + G  +F TPR V      +           +P +   + DP  GTGGFL  A+ H+   
Sbjct: 161 NAG--EFYTPRAVTQFMVDIC----------NPRLGEVVLDPATGTGGFLVCAIEHLRKQ 208

Query: 231 GSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             +     +L     G E +   H +CV  +L+  +E  P + +  N        +D  T
Sbjct: 209 VRNIADEVMLQSSIRGVEKKHLPHILCVTNLLLHGIEV-PSQIVHDNALMRPL--RDYTT 265

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             R     +NPPFG   E D                 P   +  + + LFL+ + + L+ 
Sbjct: 266 ADRVDLVFTNPPFGGMEECDG---------------YPADLRTKETADLFLVLIKHILK- 309

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
               GGRAA+VL    LF   A   +  I+  LL    +  IV LP  +F
Sbjct: 310 ---PGGRAALVLPDGVLFGEGA---KVRIKEQLLAECNLHTIVRLPHGVF 353


>gi|94267247|ref|ZP_01290823.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93452077|gb|EAT02763.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 57/257 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE +++   S  + G  +F TPR V    T  +++  D      P +  T+ DP C
Sbjct: 144 LGGVYEQILKDLQSAGNAG--EFYTPRAV----TRFMVNRVD------PKLRETVMDPAC 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPP---------ILVPHGQELEPETHAVCVAGMLIRRLE 265
           GTGGFLT A+ H      H+   P         IL   G E +   H + V  +++  +E
Sbjct: 192 GTGGFLTCAIEHKR---KHYVKTPQDEATLQRSIL---GVEKKSLPHLLAVTNLILHGIE 245

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +  R      I+  + L++ L +    +R    ++NPPFG     ++D +E         
Sbjct: 246 NPDR------IKHDNALARPLISWSPKERVEVIVANPPFGG---MEEDGIETNFPQAFRT 296

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
           R      + +D  +   +HL     L P   GRAA+VL    LF    G G ++ ++  L
Sbjct: 297 R------ETADLFLTLFIHL-----LKPR--GRAAVVLPDGFLF----GEGMKTRLKEKL 339

Query: 382 LENDLIEAIVALPTDLF 398
           L    +  IV LP  +F
Sbjct: 340 LAECNLHTIVRLPNGVF 356


>gi|288917625|ref|ZP_06411989.1| N-6 DNA methylase [Frankia sp. EUN1f]
 gi|288351018|gb|EFC85231.1| N-6 DNA methylase [Frankia sp. EUN1f]
          Length = 761

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 102/259 (39%), Gaps = 38/259 (14%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR VV +A  L           +P     ++DP C  G FLT A +HV    S +  
Sbjct: 235 LTTPRSVVRMAVRL----------TNPVGGERIHDPFCRAGEFLTAAADHVR---SRNPN 281

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L+  G   +     +    +L+  L         +N++ G     D    + F   L
Sbjct: 282 TSGLIASGHTSDSSIAGIARMNLLLHDLAP-------QNLRVGHAGWPDQKPDEMFDLVL 334

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPPF   + +D   +      GE        P   + +  +L      L       GRA
Sbjct: 335 VNPPFNDSYWQDTTFLNSFWPYGE--------PPSHNANYAWLQFALTSLA----KDGRA 382

Query: 357 AIVLSSSPLFNGR-AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A+V+   P+  G  A   ES IR  ++    ++A+V+LP  LF  T I   LWIL  R+ 
Sbjct: 383 AVVM---PVGAGSSANPRESFIRAAMVSAGAVDAVVSLPPRLFAHTLIPATLWIL--RRP 437

Query: 416 EERRGKVQLINATDLWTSI 434
           +  R  V  I+A    T +
Sbjct: 438 DHDRDDVLFIDARGAGTPV 456


>gi|197119931|ref|YP_002140358.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter bemidjiensis Bem]
 gi|197089291|gb|ACH40562.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter bemidjiensis Bem]
          Length = 484

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 47/261 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE  IR  G+    G E + TPR ++     ++           P +   +YD   
Sbjct: 157 LSQLYEAKIRNMGNAGRNGGE-YYTPRPLIRAIVQVV----------KPEIGERIYDGAV 205

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A +++        +  K+      +G+E +   + + +  +++  +E+    
Sbjct: 206 GSAGFLCEAYDYLVAKPNLTTADLKMLQERTFYGKEKKSLAYVIAIMNLILHGIEA---- 261

Query: 271 DLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL+++L   +   RF   L+NPPFG    K++  V++             
Sbjct: 262 ---PNIIHTNTLTENLADVQEKDRFDVILANPPFGG---KERPEVQQ------------N 303

Query: 328 LP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            P +  + + LFL H    L+     GGRA +V+ ++ L N    +    +R+ LLE+  
Sbjct: 304 FPIRTGETAFLFLQHFIKMLK----AGGRAGVVIKNTFLSN--TDNAAVSLRKLLLESCN 357

Query: 387 IEAIVALPTDLFFRTNIATYL 407
           +  I+  P   F    + T +
Sbjct: 358 LHTILDCPGGTFQGAGVKTVV 378


>gi|327184404|gb|AEA32849.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 609

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 21/189 (11%)

Query: 276 IQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + QG TLS   +T     + F   ++ PP   +  KD   +E         RF  G    
Sbjct: 187 VYQGDTLSDPKYTQDGNLQLFDKIVTFPPINARISKDA-IIE-----NRFNRFRYGDITY 240

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + G   F+ +  + L    N  G+A IV+S  PLF G      +  R++L+++DLIE ++
Sbjct: 241 TKGESAFISNAISSL----NQTGKAVIVVSDGPLFQG---GKVASFRKFLVDHDLIETVI 293

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRR 450
           ALP+ L   + I   + I++  KT+  +G++Q INA  + W      GK  RI++    +
Sbjct: 294 ALPSSLLSYSIIPINILIINKNKTDS-KGQIQFINANQNEWYQTDKHGK--RILSTLGIQ 350

Query: 451 QILDIYVSR 459
           +I+++Y SR
Sbjct: 351 KIVELYHSR 359


>gi|294675505|ref|YP_003576121.1| type I restriction-modification system subunit M [Prevotella
           ruminicola 23]
 gi|294472887|gb|ADE82276.1| type I restriction-modification system, M subunit [Prevotella
           ruminicola 23]
          Length = 509

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/313 (19%), Positives = 123/313 (39%), Gaps = 51/313 (16%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDR 153
           + RNN+  +I      + + +  +     +  + KA +L  +  +   +++   DT    
Sbjct: 110 HVRNNVFVFIKGIGKESGSAYSRY-MQDAVFSIPKADVLQSVVDDIDLLDMEDADT---- 164

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            M ++YE+++ R   +   G   F TPR ++ +   +            P +   + DP 
Sbjct: 165 -MGDVYEYMLARMSEKGQNGQ--FRTPRHIIRMIITM----------AEPKIDDVICDPA 211

Query: 214 CGTGGFLTDAMNHVAD-----CGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLE 265
            G+ GF+ +A   + D       S+  +         +G + +     +    ML+  + 
Sbjct: 212 MGSAGFIMEAAKQIYDQNRAVIQSNEDVRKRYYSTMFNGFDTDQTMLRIGAMNMLLHGIP 271

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           S        NI+   +LS+D     R+  C++NPPF  K  K           G + +  
Sbjct: 272 S-------PNIKYQDSLSEDNTDQSRYTLCVANPPFSGKVLK-----------GTISKSL 313

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             +   +   +LF+      L++    GGR   V+    LF          IR+ L++  
Sbjct: 314 LSIANTNATELLFVALFVRSLKV----GGRCFSVVPDGVLFGN--DKAHMAIRKELVDKQ 367

Query: 386 LIEAIVALPTDLF 398
            + A++++P  +F
Sbjct: 368 CLRAVISMPAGVF 380


>gi|158521274|ref|YP_001529144.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510100|gb|ABW67067.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 1362

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 47/275 (17%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETHAVCVA 257
           +P    ++YDP  GT   L   ++HV+    + G + +   I    G E   +  +  + 
Sbjct: 170 APSKGESIYDPCFGTADLLITTIDHVSGQQENTGYNMESVNI---SGVE---KNISAYIV 223

Query: 258 GM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           GM  L+    SDP+ +L  ++++ +  +        F   L+ PP+G   +  K+ +E  
Sbjct: 224 GMTRLVLAGASDPKIELGNSLERTAPANPQ---QDGFDVVLATPPWGAIHKILKEEIELN 280

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                 G++ P   +   G  LF+ H LAN   L P+G  RA I +  S LF    G  E
Sbjct: 281 ------GKYYPVRTRGRAG--LFIQHALAN---LRPDG--RAIIAVPQSLLF----GDTE 323

Query: 375 SEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRG----KVQLINATD 429
             +R WL+EN  +EA+++LP ++F    +I + + +L       RRG    +++++NA  
Sbjct: 324 INLRAWLIENHTVEAVISLPPNVFGALISIPSGILVL-------RRGGSTKQIRMVNAEP 376

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            +   R  GK+   I+D Q   ++ +  + E  ++
Sbjct: 377 FFEQGR--GKQPTTISDSQIHSLVAMIRNPEQSQY 409


>gi|329729351|gb|EGG65758.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 277

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 100/245 (40%), Gaps = 51/245 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFL 220
           +G  L
Sbjct: 234 SGSLL 238


>gi|257795446|ref|ZP_05644425.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
 gi|257789418|gb|EEV27758.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
          Length = 199

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 15/138 (10%)

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +G   PK S     F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E
Sbjct: 4   YGKLAPK-SKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIE 55

Query: 384 -NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             + +EA++ LP ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK + 
Sbjct: 56  EKNYLEAVIGLPANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQN 109

Query: 443 IINDDQRRQILDIYVSRE 460
            ++D Q  +I+D Y  +E
Sbjct: 110 HLSDAQVERIIDTYKRKE 127


>gi|167957101|ref|ZP_02544175.1| type I restriction-modification system, M subunit [candidate
           division TM7 single-cell isolate TM7c]
          Length = 440

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 150/391 (38%), Gaps = 62/391 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLR--------------RLECALEPTRSAVR 56
           L N IWK A +L G     DF   +L F   R              R   A + + + + 
Sbjct: 14  LHNTIWKIANELRGSVDGWDFKAYVLGFLFYRFISENLVNYINAEERKTGATDFSYAELS 73

Query: 57  EKYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLS--TLGSTNTR--NNLESYIASFS--D 109
           +    FG  + ++ + F  +    F N  + + +   L  T ++   N+E     F   D
Sbjct: 74  DDQAEFGRKDTVNDKGFYILPSELFENVRKRAKNDENLNETLSKIFRNIEQSAKGFDSED 133

Query: 110 NAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
           + + +F+D D +S     T+ R  +   L K+      +EL    D   D    + YE+L
Sbjct: 134 DFRGLFDDLDVNSNKLGPTVTRRNER--LVKLMNAIGELELGKFEDNTID-AFGDAYEYL 190

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  +     +   +F TP++V  L   + +     + K S   +  +YDP  G+G  L  
Sbjct: 191 MTMYAGNAGKSGGEFFTPQEVSELLAKITV-----VGKTS---VNKVYDPAAGSGSLLLK 242

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +               +GQE+   T+ +C   M +  +  +       NI  G TL
Sbjct: 243 FAKVLGKDNVRQGF------YGQEINITTYNLCRINMFLHDINYEKF-----NIAHGDTL 291

Query: 283 SK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
                +  + F   +SNPP+  KW+ D +            RF P   L   S   + F 
Sbjct: 292 KDPKHWDDEPFDAIVSNPPYSIKWDGDSNPTLINDP-----RFSPAGVLAPRSKADLAFT 346

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           MH+ + L    +  G AAIV     L+ G A
Sbjct: 347 MHMLSWL----SESGTAAIVEFPGALYRGGA 373


>gi|270296273|ref|ZP_06202473.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273677|gb|EFA19539.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 502

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 133/315 (42%), Gaps = 51/315 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSE 169
           AK+I ++  F+     ++   LL ++    + IE   D   DR    +IYE +++   S 
Sbjct: 105 AKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF--DDADDRHTFGDIYEGILKDLQSA 161

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--- 226
            + G  +F TPR +      +L           P +  T  D T GTGGFLT A+ +   
Sbjct: 162 GNAG--EFYTPRALTDFIVMML----------DPKLGETFGDFTSGTGGFLTSALKYMGR 209

Query: 227 -VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-- 283
            +       K+   +V  GQE +P  + + +  +L+  +E       + NI    +L   
Sbjct: 210 NIGSAADGEKLQNAVV--GQEWKPLPYLLSITNLLLHDIE-------APNITNCDSLGTN 260

Query: 284 -KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D     +      NPP+G   E   D+V+            P   + S+ + LF+  +
Sbjct: 261 VTDFKESDKVDVIGMNPPYGGSTE---DSVKSNF---------PVQYRSSETADLFIALI 308

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RT 401
             +L+     GGR  +++    LF G  G+ +  ++  LL    +  I+ LP  +F   T
Sbjct: 309 MYRLK----AGGRCGVIIPDGFLF-GTDGA-KLALKENLLRKFNLHTIIRLPGSIFSPYT 362

Query: 402 NIATYLWILSNRKTE 416
           +IAT +   +N + E
Sbjct: 363 SIATNILFFNNEEAE 377


>gi|323441376|gb|EGA99035.1| hypothetical protein SAO46_2663 [Staphylococcus aureus O46]
          Length = 630

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 109/286 (38%), Gaps = 66/286 (23%)

Query: 166 FGSEVSEGAED------FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           +G  V  G  D       +TPR + +L   L+          S      + DP CG+GGF
Sbjct: 306 YGEFVKYGGNDGNALGIVLTPRHITNLMCELI----------SINHTDFVLDPCCGSGGF 355

Query: 220 LTDAMN---HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKN 275
           L  AMN   ++AD     K       HG EL           M++R   +S+ RRD    
Sbjct: 356 LVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLFTTATTNMILRGDGKSNLRRD---- 411

Query: 276 IQQGSTLSKDLFTGKRFHY------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                    D+F   + +Y       L NPP+ +   K+                   L 
Sbjct: 412 ---------DVFHVDKEYYKDKINKILLNPPYSQAKTKN-------------------LS 443

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            +S+ S      +   LE    GG  AAI+  S+ +  G+    +   +R +LE   +E 
Sbjct: 444 HLSEISF-----IKESLEYMKTGGKLAAIIPQSTMI--GKT-KNDKNYKREILEKHSLET 495

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           ++ L  D F+   +   + I +    ++ + +V  +N TD    +R
Sbjct: 496 VITLNKDTFYGVGVNPCIAIFTAGIPQDEKKRVNFVNFTDDGYVVR 541


>gi|253991410|ref|YP_003042766.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782860|emb|CAQ86025.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica]
          Length = 544

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K       + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIIKPSLLTKAVDMIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADC 230
            ++     ++        + +P    T+ DP CGTGGFL  +  ++           ++ 
Sbjct: 169 HIIRTMVEMM--------EPNPARGETVCDPACGTGGFLATSYEYLLEKYSSLESVHSEI 220

Query: 231 GSHHK---------IPPILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G++ +            +L P          HG + +     +    +++  +E +P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVE-EPDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D                 + K
Sbjct: 280 YQDTMSQSFSANFPQASKNAFNLILANPPFTGSLDEEDTDPTLL------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKILVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|187732102|ref|YP_001882946.1| N-6 DNA methylase [Shigella boydii CDC 3083-94]
 gi|187429094|gb|ACD08368.1| N-6 DNA methylase [Shigella boydii CDC 3083-94]
 gi|320177258|gb|EFW52265.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella dysenteriae CDC 74-1112]
          Length = 544

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGING--QFRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +++ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA+
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLEAV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|117920472|ref|YP_869664.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117612804|gb|ABK48258.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 513

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 70/277 (25%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++     +L           P +   + DP+CGT
Sbjct: 142 DLYEYLLSKLTTAGINGQ--FRTPRHIIRAMVEML----------DPTVEDRIVDPSCGT 189

Query: 217 GGFLTDAMNH----------------VADCGSHHKIP----PILVPHGQELEPE------ 250
            GFLT A  +                V D G   ++      +LV H   +  +      
Sbjct: 190 AGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYVNTDMFHGFD 249

Query: 251 ---THAVCVAGMLIRRLESDPRRDLSKNIQQGST-----LSKDLFTGKRFHYCLSNPPF- 301
              T     A  L+    ++P       +    T      SKD +T      C++NPPF 
Sbjct: 250 FDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKDAYT-----LCIANPPFK 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G   E+D D               P + ++       L+ +A  L L  NGG + AI++ 
Sbjct: 305 GSLDEEDVD---------------PAILRMVKTKKTELLFVAQILRLLKNGG-KTAIIVP 348

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              LF   + +   ++R+ ++EN+ ++A+V+LP+ +F
Sbjct: 349 DGVLFG--SSNAHQQLRQHIIENNELQAVVSLPSGVF 383


>gi|282866391|ref|ZP_06275436.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282558787|gb|EFB64344.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 472

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 115/281 (40%), Gaps = 49/281 (17%)

Query: 127 LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +E + LL K     +GI++   DT  D     +YE+++ +  +    G   F TPR ++ 
Sbjct: 82  IETSNLLTKAVDMINGIDMGDKDTKGD-----LYEYMLSKIATAGQNG--QFRTPRHIIQ 134

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----- 240
           L   ++          +P     + DP CGT GFL  A  +V          P       
Sbjct: 135 LMVEMM----------APQPGDEICDPACGTAGFLVAAAEYVEQTHREEMFEPAQRQHFN 184

Query: 241 --VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLS 297
             + HG + +     +    ML+  +E       + +I+   +L++++     R+   L+
Sbjct: 185 ESMFHGFDFDSTMLRIGSMNMLLHSVE-------NPDIRYRDSLAQNVAGEADRYSLILA 237

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF    + D  A + +               +       L        L P  GGRAA
Sbjct: 238 NPPFAGSLDHDATAADLQK-------------VVKTKQTELLFLALFLRLLKP--GGRAA 282

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +++    LF+  + +   ++R+ L+E   ++A+++LP  +F
Sbjct: 283 VIVPGGVLFDS-SSNAYKDMRKLLVEGHKLDAVISLPGGVF 322


>gi|261492692|ref|ZP_05989241.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495869|ref|ZP_05992299.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308461|gb|EEY09734.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311658|gb|EEY12812.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 489

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 47/270 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V       +           P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMVQAI----------KPKLGERIADFACGT 196

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GGFLT A+  V +          L     +G E +   H +C+  +L+  ++       +
Sbjct: 197 GGFLTSALK-VLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID-------N 248

Query: 274 KNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            N+   + L    KD     +F   L NPP+G         +E+  KN       P   +
Sbjct: 249 PNVHHDNALEKSVKDYTENDKFDVILMNPPYGGS------EIEQIKKN------FPTALQ 296

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GRAA+VL    LF     + +  I++ LLE   +  I
Sbjct: 297 SSETADLFMSVIMYRLK----QNGRAAVVLPDGFLFG--TDNAKVAIKKKLLEEFNLHTI 350

Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERR 419
           + LP  +F   T+I T   IL   KTE  R
Sbjct: 351 IRLPHSVFAPYTSITTN--ILFFDKTEPTR 378


>gi|126665400|ref|ZP_01736382.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
 gi|126630028|gb|EBA00644.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
          Length = 317

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 51/303 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGG 64
           A+L   IW  A D+ G     DF + +L     R         +E    ++    L+   
Sbjct: 8   AALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSINYAALSDEV 67

Query: 65  SNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDN 110
              D+ +  ++  GY  Y +  ++ +   + N+  +L + +A+               D+
Sbjct: 68  ITPDIKDDAIRTKGYFIYPSQMFA-NVAKNANSNESLNTDLAAIFAAIEASASGYPSEDD 126

Query: 111 AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIY 159
            K +F DFD +S   RL     +K   L  + K  +G++         D     +  + Y
Sbjct: 127 IKGLFADFDTTSN--RLGNTVKDKNLRLAAVLKGVAGLDFGHNFYEKSDAAQIDLFGDAY 184

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L      A+ K++   +  +YDP CG+G  
Sbjct: 185 EFLISNYAANAGKSGGEFFTPQHVSKLIAQL------AMHKQTS--VNKIYDPACGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  HV   G H          GQE+   T+ +    M +  +  D       NIQ G
Sbjct: 237 LLQATKHV---GPHFIEEGFF---GQEINHTTYNLARMNMFLHNINYDKF-----NIQLG 285

Query: 280 STL 282
           +TL
Sbjct: 286 NTL 288


>gi|254362757|ref|ZP_04978840.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153094385|gb|EDN75236.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 489

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 47/270 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V       +           P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMVQAI----------KPKLGERIADFACGT 196

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GGFLT A+  V +          L     +G E +   H +C+  +L+  ++       +
Sbjct: 197 GGFLTSALK-VLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID-------N 248

Query: 274 KNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            N+   + L    KD     +F   L NPP+G         +E+  KN       P   +
Sbjct: 249 PNVHHDNALEKSVKDYTENDKFDVILMNPPYGGS------EIEQIKKN------FPTALQ 296

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GRAA+VL    LF     + +  I++ LLE   +  I
Sbjct: 297 SSETADLFMSVIMYRLK----QNGRAAVVLPDGFLFG--TDNAKVAIKKKLLEEFNLHTI 350

Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERR 419
           + LP  +F   T+I T   IL   KTE  R
Sbjct: 351 IRLPHSVFAPYTSITTN--ILFFDKTEPTR 378


>gi|301055839|ref|YP_003794050.1| type I restriction modification system subunit M [Bacillus
           anthracis CI]
 gi|300378008|gb|ADK06912.1| type I restriction modification system M subunit [Bacillus cereus
           biovar anthracis str. CI]
          Length = 484

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 49/275 (17%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           +L KI      IE+      DR    ++YE+L+ +  +  + G   F TPR ++ +   L
Sbjct: 122 MLTKIVDGIDNIEMK-----DRDTKGDLYEYLLLKVATAGTNGQ--FRTPRHIIDMIVEL 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------VPH 243
           +        K +P  I  + DP  G+ GFL  +  ++    S   +   L       + H
Sbjct: 175 M--------KPTPEDI--IVDPAAGSAGFLVSSGEYLRKNHSDLFLVQGLKQHFNNDMFH 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G +++     +    M++  +E+        NIQ   +LS+      ++   L+NPPF  
Sbjct: 225 GFDMDRTMLRIGAMNMMLHGVEN-------PNIQYQDSLSESNKDEDKYTLVLANPPF-- 275

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                K +++ E  + +L +    + K     +LFL      L+     GGR A ++   
Sbjct: 276 -----KGSLDYEAVSADLLK----VTKTKKTELLFLALFIRMLK----AGGRCASIVPDG 322

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            LF   +     +IR+ ++E   +EAIV++P+ +F
Sbjct: 323 VLFG--STKAHKDIRKEIIEKHKLEAIVSMPSGVF 355


>gi|331002084|ref|ZP_08325603.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411178|gb|EGG90594.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 651

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 28/181 (15%)

Query: 295 CLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +SNPP+ ++W+   KD D            R+G   PK S     FL+H  +   L PN
Sbjct: 97  VVSNPPYSQRWDPTGKDSDP--------RYVRYGIA-PK-SKADYAFLLH--DLYHLQPN 144

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           G     IVL    LF G     E  IR+ L+E + I+AI+ LP ++FF T I T + +L 
Sbjct: 145 G--IMTIVLPHGVLFRG---GEEGNIRKNLIEQNNIDAIIGLPANIFFGTGIPTIVMVLR 199

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
            ++       + +I+A+      + +GK  ++   D R+ I+D    R+N  K+S+++  
Sbjct: 200 QKR---ENTDILIIDAS---KGFKKDGKNNKLRACDIRK-IVDTIKERKNVEKYSKVVSL 252

Query: 471 R 471
           +
Sbjct: 253 K 253


>gi|227892230|ref|ZP_04010035.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227865952|gb|EEJ73373.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 471

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 163/363 (44%), Gaps = 59/363 (16%)

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIY-------EHLIRRFGSEV 170
           D   ++ ++EK   +L  + K+  G  +    V D + + +Y       E L+       
Sbjct: 88  DLIKSLYKIEKKNPVLKNMFKDIKGSNM-AGRVADLIFAMMYLKKEPSFEELLDWIARSS 146

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              +E  +TP  +  L   L+       FKE+     T+YDP  GT   L +  +   + 
Sbjct: 147 GSRSEFSITPLSINKLMVKLV-----GSFKENI----TVYDPAVGTANLLLNVDSENFEK 197

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFT 288
             ++         GQ++      +     +++ + S       KNI+   G +L+ +   
Sbjct: 198 NKYY---------GQDINKFVLEIAKMNAILQDINS-------KNIELKLGDSLNSNWNF 241

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           GK     +++ P    W   KD +E++++    G+    LP  ++    F++   +KL  
Sbjct: 242 GKA-DVVVADMPLAMSWRPSKD-LEQDNRYKNYGK----LPNKNEWP--FILEGLDKL-- 291

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  G    + +   LF  RA   E ++RR LLE+ +I+A++ LP  L++ T++AT L 
Sbjct: 292 --SADGTMIALSAQGILF--RAAK-EYKVRRKLLEDGMIKAVILLPEKLYYGTSVATCLL 346

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           +L  +K+ + R  V  INA+  +  +    K   ++ DD   +I+D++ +++  K FSR 
Sbjct: 347 VL--KKSSKDRD-VFFINASKEYQKV----KSNNVLTDDNIGKIVDVFNNQKEIKNFSRK 399

Query: 468 LDY 470
           + +
Sbjct: 400 ISF 402


>gi|91203220|emb|CAJ72859.1| similar to type I restriction modification enzyme M chain
           [Candidatus Kuenenia stuttgartiensis]
          Length = 484

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 58/295 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           MS++YE+ I+  G+    G E + TPR ++     ++          +P +   +YD   
Sbjct: 157 MSHLYENKIKNMGNAGRNGGE-YYTPRPLIKTIVKVV----------APTIGNKVYDGAV 205

Query: 215 GTGGFLTDAMNHVADCGS-HHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRR 270
            + GFL +A  ++    +   K    L     +G+E +   + +    M++  +E+    
Sbjct: 206 ASAGFLAEAFEYLKTSKNLTTKDAETLQKRTFYGKEKKSLAYIIGTMNMILHGIEA---- 261

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL++   D+    R+   L+NPPFG K               E       
Sbjct: 262 ---PNIVHTNTLTENMADIQEKDRYDVILANPPFGGK---------------ERTEVQQN 303

Query: 328 LP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            P K  + + LFL H    L+     GG+A +V+ ++ L N    S    +R+ LLE+  
Sbjct: 304 FPIKTGETAFLFLQHFIKILK----AGGKAGVVIKNTFLSNTDNAS--VSLRKLLLESCN 357

Query: 387 IEAIVALPTD-----------LFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +  ++ LP             LFF   + T          + + GK   +N  DL
Sbjct: 358 LHTVLDLPGGTFTGAGVKTVVLFFEKGVPTQNVWFYQLNLDRKLGKTNPLNENDL 412


>gi|22477129|gb|AAM97371.1| DNA methylase [Streptomyces collinus]
          Length = 393

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 41/282 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           + +  +R   ++ +EG+  + TP D+  L     +  D             + DP CG+G
Sbjct: 28  LLDQCLRDLSADQAEGSR-YFTPDDMARLMVGAAVPRDR----------HRVLDPVCGSG 76

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L ++  +V +   +  + P +   G+E    T  V      +R +        +    
Sbjct: 77  GLLVESHRYVRE---NVGLDPTMSLQGKEQHAHTSQVARMNFAVRGI-------TAHVFP 126

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-----RFGPGLPKIS 332
            G +L+      +     L+N PF ++    +D  E++ +          R+    P   
Sbjct: 127 PGDSLADP--EPEPHDIILANLPFNQRDWAPEDKTERDVRRSPSPIPVDPRWPEESPSKG 184

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
             +  ++ H+A+ L       GRA  +++ S + N R     S +R  LL +DL+E ++A
Sbjct: 185 SANSAWIQHIAHALA----PAGRAVFLMADS-VANSRQPVTRS-VRERLLRDDLVECVIA 238

Query: 393 LPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINA 427
           LP  +F  +     LW+L+  K+        +RR +V  INA
Sbjct: 239 LPPRVFGHSKAPACLWVLNKDKSARPGWGARDRRRQVLFINA 280


>gi|309800154|ref|ZP_07694340.1| type I restriction modification system M subunit [Streptococcus
           infantis SK1302]
 gi|308116201|gb|EFO53691.1| type I restriction modification system M subunit [Streptococcus
           infantis SK1302]
          Length = 485

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 130/311 (41%), Gaps = 62/311 (19%)

Query: 104 IASFSDNAKAIFEDFDFS----STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           I  F  N K   +D  FS      I ++ K   L K     + ++  P  + D  + +IY
Sbjct: 92  IFPFIKNLKGDTDDTAFSRYMKDAIFQINKPATLQKAI---AALDELPTDIKD--IGDIY 146

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+ +     + G   F TPR ++ +   L+           P +   + DP  G+ GF
Sbjct: 147 EYLLSKLSQAGANGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGF 194

Query: 220 LTDAMNHV----------ADCGSH-HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           L  A  ++           D   H H      + HG + +     +    M++  +E   
Sbjct: 195 LVSASRYLDRRKEEWQTNIDSVKHFHNT----MFHGNDTDTTMLRLGAMNMMLHGVE--- 247

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +  I    +LS+D     ++   L+NPPF       K +++ +  +G+L       
Sbjct: 248 ----NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYDSTSGDL----LAT 292

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLI 387
            K     +LFL      L+     GGRAA+++    LF + +A  G   IR+ ++E+  +
Sbjct: 293 IKTKKTELLFLALFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG---IRQEIVEHHKL 345

Query: 388 EAIVALPTDLF 398
           +A++++P+ +F
Sbjct: 346 DAVISMPSGVF 356


>gi|291458786|ref|ZP_06598176.1| putative type I restriction-modification system, M subunit
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418703|gb|EFE92422.1| putative type I restriction-modification system, M subunit
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 499

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 48/255 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+ +       G   F TPR ++ +   ++           P    ++ DP 
Sbjct: 153 IRGDVYEYLLSKIAQSGVNGQ--FRTPRHIIRMMVEMM----------DPKPTDSICDPA 200

Query: 214 CGTGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           CGT GFL  + +++ +             +H +  +   HG +++     +    M+   
Sbjct: 201 CGTSGFLVASGDYLREKYKKEVLLDKQNRNHFMNDMF--HGYDMDRTMLRIGAMNMMTHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+         I+   +LS      + +   L+NPPF  K   D D V  + +      
Sbjct: 259 VEN-------PFIEYRDSLSDQNPDKEMYSLILANPPF--KGNLDADTVSTDLQK----- 304

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L++    GGR A ++    LF   + +    IR+ ++E
Sbjct: 305 ----VCKTKKTELLFLALFVRMLKI----GGRCACIVPDGVLFG--SSNAHKAIRKEIVE 354

Query: 384 NDLIEAIVALPTDLF 398
           N  +EA++++P+ +F
Sbjct: 355 NQRLEAVISMPSGVF 369


>gi|157804105|ref|YP_001492654.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
 gi|157785368|gb|ABV73869.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
          Length = 869

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 126/309 (40%), Gaps = 51/309 (16%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA----MNHVADCGS 232
           + TPRDV+     L            P     + D  CG+GGFL ++    MN++    S
Sbjct: 331 YFTPRDVIKFMVKL----------AGPNENTKILDACCGSGGFLIESFAYIMNNIPKNLS 380

Query: 233 HHKIPPIL------VPHGQELEPETHAVCVAGMLIRRLESDP----RRDLSKNI------ 276
             K   I+      +  G + E +   +    M + +  S      +  L KN+      
Sbjct: 381 KSKHEEIVKNIKENLIFGVDKEEKVVRLARINMYVHKDSSSKIFRLQDALDKNLTIDPTL 440

Query: 277 ----QQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKI 331
               QQ    +K++     F   L+NPPF   ++ KDKD  + + +   L  +     K 
Sbjct: 441 PDEEQQQYKDAKEVLINGAFQIVLTNPPFSSNYKMKDKDTNKSDTR--ILKNYTVVGKKN 498

Query: 332 S-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           S + ++LF+    + LEL    GG+   V+  S L N +    ++  R W+L+   I+A+
Sbjct: 499 SINSNILFIERYYDLLEL----GGKLITVIDDS-LLNAK---NQASFREWILDRFHIKAV 550

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++LP + F   +      I+   K E +      I+   ++ +I N        ND   R
Sbjct: 551 ISLPFNAFVNASTTIKTSIIYLEKKEYKS-----ISKNKIFMAICNNVGHDDSGNDTPER 605

Query: 451 QILDIYVSR 459
             L+I  S+
Sbjct: 606 NNLNIVYSK 614


>gi|239502429|ref|ZP_04661739.1| putative restriction-modification protein [Acinetobacter baumannii
           AB900]
          Length = 778

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 45/238 (18%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--SH 233
           ++ TPR +      L+          +P     +YDP CGTGGFLT+A +H+ D    ++
Sbjct: 284 EYFTPRHITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIAN 333

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +    I + H      E  +      +   L  D        I Q  TL   + +   + 
Sbjct: 334 NSSEEIKLKHNTIFGREITSNAKLAKMNMILHGDGH----SGICQIDTLQNPIES--EYD 387

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++N PF +K         K  KN              DG  + ++H     +     G
Sbjct: 388 VVITNMPFSQKTSYSHLYENKLAKN--------------DGDGVCVLHCFKATK----KG 429

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-----RTNIATY 406
           GR A+V+    LF     +  + +R++L EN  ++A+V+LP ++F      +TNI  +
Sbjct: 430 GRMALVVPEGFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYF 483


>gi|325685548|gb|EGD27637.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 491

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 53/301 (17%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K G+L +   N    +   D     + ++IYE ++++  S  + G  +F TPR +     
Sbjct: 123 KNGVLLRQVINVIDEQDFTDPQDRHMFNDIYEGILKQLQSAGNSG--EFYTPRALTDFIA 180

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHG 244
             L           P +   + D  CGTGGFL   +N     +       K    +   G
Sbjct: 181 ETL----------QPKLGEKMADFACGTGGFLISTLNVLKEQIKSVEDQEKYNNSVF--G 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGK-RFHYCLSNPPF 301
            E + + + + V  +L+  + S+P      +I  G++L K  D +T K +F   + NPPF
Sbjct: 229 IEKKGQPYILAVTNLLLHDV-SNP------DIVHGNSLEKKVDEYTEKDKFDIIMMNPPF 281

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGRAAI 358
           G                 EL       P   + S+ + LF+  +  +L+     GGR  +
Sbjct: 282 G---------------GSELPVIKQNFPTDLQSSETADLFMALIMYRLK----EGGRVGL 322

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           +L    LF G  GS  S  +R L + +L   I+ LPT +F   T+IAT +      K  E
Sbjct: 323 ILPDGFLF-GDDGSKLSLKKRLLTDFNL-HTIIRLPTSIFAPYTSIATNILFFDKTKPTE 380

Query: 418 R 418
           +
Sbjct: 381 K 381


>gi|189345678|ref|YP_001942207.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
 gi|189339825|gb|ACD89228.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
          Length = 846

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 49/254 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++     +L+          P    T+ DP C
Sbjct: 135 LGDAFEYLLSVLGSQGDAG--QFRTPRHIIDFMVEILV----------PQKNETILDPAC 182

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRL 264
           GT GFL  A  H+    +       L P           G ++ P+   + +  + +   
Sbjct: 183 GTAGFLISAYKHILRTNTDTDGHSTLTPDEKGRLARNFKGYDISPDMVRLSLVNLYLHGF 242

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +DP      +I +  TLS +    +     L+NPPF       K  + K HK   +   
Sbjct: 243 -TDP------HIFEYDTLSSEERWNEFADVILANPPF----MSPKGGI-KPHKRFSI--- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                +     +LF+ ++A  L       GRA I++    +F  +      E+R+ L+EN
Sbjct: 288 -----QAKRSEVLFVDYMAEHL----TPAGRAGIIVPEGIIFQSQMAY--KELRKMLVEN 336

Query: 385 DLIEAIVALPTDLF 398
            L+ A+++LP   F
Sbjct: 337 SLV-AVISLPAGCF 349


>gi|296122895|ref|YP_003630673.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
 gi|296015235|gb|ADG68474.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
          Length = 484

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 45/260 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  I+  G+    G E + TPR ++     ++           P +   +YD   
Sbjct: 157 LSHLYEAKIKNMGNAGRNGGE-YYTPRPLIRAMIQVV----------KPKIGERIYDGAV 205

Query: 215 GTGGFLTDAMNHV-ADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+ GFL +A  ++ A  G   K    L     +G+E +   + + +  M++  +E+    
Sbjct: 206 GSAGFLCEAFEYLRAKRGLTTKEAKTLQEKTFYGKEKKSLAYVIAIMNMILHGIEA---- 261

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               NI   +TL++   D+    R    L+NPPFG K  K            E+ +  P 
Sbjct: 262 ---PNIVHTNTLTENLADIQEKDRVDVVLANPPFGGKERK------------EVQQNFP- 305

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL H    L+     GGR  +V+ ++ L N    S    +R+ LLE+  +
Sbjct: 306 -IRTGETAFLFLQHFIKILK----AGGRGGVVIKNTFLSNTDNAS--VSLRKLLLESCNL 358

Query: 388 EAIVALPTDLFFRTNIATYL 407
            A++  P   F    + T +
Sbjct: 359 YAVLDCPGGTFQGAGVKTVV 378


>gi|294850236|ref|ZP_06790971.1| type I restriction-modification system [Staphylococcus aureus
           A9754]
 gi|294822852|gb|EFG39286.1| type I restriction-modification system [Staphylococcus aureus
           A9754]
          Length = 346

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 100/245 (40%), Gaps = 51/245 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 73  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 126

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 127 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 185

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 186 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFL 220
           +G  L
Sbjct: 295 SGSLL 299


>gi|148263099|ref|YP_001229805.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146396599|gb|ABQ25232.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 549

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 135/349 (38%), Gaps = 89/349 (25%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIE---LHPDTVP 151
           R  +  Y+AS   +   + E F      ARLE  +  +L ++      IE   L PD   
Sbjct: 87  RGEVFPYMASLVKDEPQVAEYF----RDARLEINEVDVLKQVVDELDSIEFRKLGPD--- 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V  +I+E+L+   G     G   F TP+ +     A++           P    T+ D
Sbjct: 140 --VKGDIFEYLLTHLGQSALNG--QFRTPKQIRSFMVAMV----------DPEFGDTIDD 185

Query: 212 PTCGTGGFLTDAMNHV---------------------------------ADCGSHHKIPP 238
           P CGT GFL DA+ ++                                  +  ++ K P 
Sbjct: 186 PACGTAGFLIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQMPNLQTYRKGPG 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIR------RLESDPRRDLSK-NI--QQGSTLSKDLFTG 289
             +P    LE   +   V+  ++R       L    +  L + N+  + G     DL   
Sbjct: 246 EKIPDWGILEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEMGGLTEDDL--N 303

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +++   LSNPPF       KD++  +            LP  S  S L  + L  +   P
Sbjct: 304 RKYKVSLSNPPFAGMLP--KDSIRHD------------LPTNSKKSELLFLGLMMESLAP 349

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              GGR A+V+    LF G  G+   E+R+ LL++  + A+V+LP  +F
Sbjct: 350 ---GGRCAVVVPEGALF-GSTGA-HVELRKKLLQDFEVLAVVSLPAGVF 393


>gi|169796762|ref|YP_001714555.1| putative restriction-modification protein [Acinetobacter baumannii
           AYE]
 gi|169149689|emb|CAM87580.1| conserved hypothetical protein; putative restriction-modification
           protein [Acinetobacter baumannii AYE]
          Length = 760

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 45/235 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--SH 233
           ++ TPR +      L+          +P     +YDP CGTGGFLT+A +H+ D    ++
Sbjct: 289 EYFTPRHITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIAN 338

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +    I + H      E  +      +   L  D        I Q  TL   + +   + 
Sbjct: 339 NSSEEIKLKHNTIFGREITSNAKLAKMNMILHGDGH----SGICQIDTLQNPIES--EYD 392

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++N PF +K         K  KN              DG  + ++H     +     G
Sbjct: 393 VVITNMPFSQKTSYSHLYENKLAKN--------------DGDGVCVLHCFKATK----KG 434

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-----RTNI 403
           GR A+V+    LF     +  + +R++L EN  ++A+V+LP ++F      +TNI
Sbjct: 435 GRMALVVPEGFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNI 485


>gi|301348334|ref|ZP_07229075.1| putative restriction-modification protein [Acinetobacter baumannii
           AB056]
          Length = 508

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 46/267 (17%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +L   ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P
Sbjct: 206 KLKLSSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NP 254

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                +YDP CGTGGFLT+A +H+ D    +++    I + H      E  +      + 
Sbjct: 255 KYGEKIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNAKLAKMN 314

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             L  D        I Q  TL   + +   +   ++N PF +K         K  KN   
Sbjct: 315 MILHGDGH----SGICQIDTLQNPIES--EYDVVITNMPFSQKTSYSHLYENKLAKN--- 365

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                      DG  + ++H     +     GGR A+V+    LF     +  + +R++L
Sbjct: 366 -----------DGDGVCVLHCFKATK----KGGRMALVVPEGFLFK----AALAPVRKYL 406

Query: 382 LENDLIEAIVALPTDLFF-----RTNI 403
            EN  ++A+V+LP ++F      +TNI
Sbjct: 407 FENAQLKAVVSLPKEVFLPYAKVKTNI 433


>gi|227889875|ref|ZP_04007680.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849739|gb|EEJ59825.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 517

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 44/253 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  ++YE+L+ +  +    G   F TPR ++ +   L+          +P +   + DP 
Sbjct: 171 VRGDVYEYLLGKLSTAGRNGQ--FRTPRHIIKMMVELM----------NPQVTDKICDPA 218

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH--------GQELEPETHAVCVAGMLIRRLE 265
            GT GFL +A   + D             H        G + +     +    ML   ++
Sbjct: 219 AGTAGFLVEAAEFLQDKRKEEIFYRKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGVD 278

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +        NI+   +LS+       +   ++NPPF  K   D D+V K+          
Sbjct: 279 N-------PNIEYQDSLSEQNTDRDEYSLIMANPPF--KGSLDYDSVSKDLLK------- 322

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LF+      L++    GGR A ++    LF   +      IR+ ++EN+
Sbjct: 323 --ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVLFG--SSKAHKSIRKEIIENN 374

Query: 386 LIEAIVALPTDLF 398
            +EA++++P+ +F
Sbjct: 375 NLEAVISMPSGVF 387


>gi|20091245|ref|NP_617320.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
 gi|19916364|gb|AAM05800.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
          Length = 420

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 56/237 (23%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR V+ L   L           SP     + DP CGT GFL  A  H+ +   HH  
Sbjct: 76  FRTPRHVIRLMVELT----------SPQPTDIICDPACGTAGFLVCAGEHLRE---HH-- 120

Query: 237 PPILVPHGQELEPETHAVCVAG--------------MLIRRLESDPRRDLSKNIQQGSTL 282
           P IL  H ++L+   H     G              ML+  +E       + +I+   +L
Sbjct: 121 PNIL--HDEKLKQHFHRGMFHGFDFDNTMLRIGSMNMLLHGVE-------NPDIRYRDSL 171

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           ++D  + +  +   L+NPPF         +++ E  + EL +    + K     +LF+  
Sbjct: 172 AQDYASDEEAYTLVLANPPFA-------GSLDYESTSKELLK----VVKTKKTELLFVAL 220

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
               L+     GGRAA+++    LF   +     E+RR L+E   ++AIV+LP  +F
Sbjct: 221 FMRLLK----PGGRAAVIVPDGVLFG--SSKAHKELRRMLVEEQKLDAIVSLPGGVF 271


>gi|302560831|ref|ZP_07313173.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000]
 gi|302478449|gb|EFL41542.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000]
          Length = 503

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 135/313 (43%), Gaps = 50/313 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
           F   + R++   LL  +    +  ++H  +  D   M+ +YE +++    +V+ G+ +F 
Sbjct: 127 FKDVVNRMQSGTLLRDLVDIVN--QIHFVSADDIHTMAFVYESILKEM-RDVAGGSGEFY 183

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM----NHVADCGSHH 234
           TPR V               F E   +  ++ DP  GTGGFL  A       V       
Sbjct: 184 TPRPVNRFMV-------QQSFLE---LGESILDPASGTGGFLVQAYEALKGQVKTDTQRR 233

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGKRF 292
           ++   +   G E +P  + +    +L+  +++        +I++GS L   ++     + 
Sbjct: 234 RLHKDI--RGIEKKPLPYLLGSMNLLLHGIDA-------PHIRRGSALLEMRNSNAADKV 284

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG + E     V K   +G          +  + + LFL  + ++L+L    
Sbjct: 285 DVVLTNPPFGGEEEA---TVVKAFPDGF---------RTQETAWLFLYSILDQLKL---- 328

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGR AIVL +  LF     S  ++I++ L+++  +  +V LP  +F     A Y  I SN
Sbjct: 329 GGRCAIVLPNGSLFAVGENSIGAKIKKKLMKDCNLHTVVRLPQGVF-----APYTQIPSN 383

Query: 413 RKTEERRGKVQLI 425
               E+ G  Q +
Sbjct: 384 ILFFEKTGPTQEV 396


>gi|238898673|ref|YP_002924354.1| putative restriction endonuclease, N6_Mtase domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466432|gb|ACQ68206.1| putative restriction endonuclease, N6_Mtase domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 872

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 117/288 (40%), Gaps = 66/288 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRT--LYDPTCGTGGFLTDAMNHVADCGSHH 234
           + TPR VV L  AL       L  ++  + R+  +YD  CGTGGFL D     AD  S  
Sbjct: 313 YFTPRSVVKLGVALA-----GLKIDAQDISRSDRVYDGCCGTGGFLIDVF---ADMWSKI 364

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP------RRDLSKNIQQGSTL------ 282
           +  P L    ++ E    A+    +    +  DP      R ++  +   GS +      
Sbjct: 365 EKNPSL--SKEKKEEYKQAIAYGHIFGADIGRDPNLSRIARLNMYLHGDGGSCIYNIDAL 422

Query: 283 --------------------SKDLFTGKR--FHYCLSNPPFGKKWE--KDKDAVEKEHKN 318
                                ++++  K   F   ++NPPF KK+   K KD  + E  N
Sbjct: 423 DKELPVHKTDKPELLAEKEQMRNIYANKEGFFDVIITNPPFAKKYSIGKSKDKEKNEISN 482

Query: 319 GE-------LGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            E       L  +  G  K     +++F+    + L+     GGR   V+    + NG+ 
Sbjct: 483 AERILSQYSLKTYDAGKVKTELRSNLMFMERYYDVLK----KGGRLLTVIDDG-ILNGKD 537

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSNRKTE 416
            S     R WL E  +I A+V+LP D F R+   + T + IL+ + TE
Sbjct: 538 YSW---FRDWLREKFIINAVVSLPGDAFQRSMDRVKTSILILTKKHTE 582


>gi|332880948|ref|ZP_08448618.1| type I restriction modification DNA specificity domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681122|gb|EGJ54049.1| type I restriction modification DNA specificity domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 977

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 47/269 (17%)

Query: 144 ELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +L P T+ D    V  + +E+ ++   +  ++  E + TPR +V     L+         
Sbjct: 260 KLDPLTLTDVDSDVKGDAFEYFLKASTATKNDLGE-YFTPRHIVKTMVRLV--------- 309

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAM----NHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +P +  T+YDP CGTGGFL ++     N++A   ++ K+      +G E+        +
Sbjct: 310 -NPQIGETIYDPFCGTGGFLIESFRYIYNNMARTEANIKMLREHTVYGNEITNTARITKM 368

Query: 257 AGMLIRRLESDPR-RDLSKNIQQGSTLSKDLFTGKRFHY----CLSNPPFGKKWEKDKDA 311
             +L     S+   RD   N   G    +D   G  +HY     L+N P+ +K       
Sbjct: 369 NMILAGDGHSNINMRDSLANPIDGKATYRD-NDGSEYHYGYDIVLANMPYSQKT------ 421

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL-ELPPNGGGRAAIVLSSSPLFNGRA 370
                K+GEL      LP  ++G  + + H    +    PN  GR A+V+    LF    
Sbjct: 422 -----KHGEL----YDLPS-TNGDSICVQHCMKAINSTSPN--GRMALVVPEGFLFRKDL 469

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF 399
               +  R +LLEN  +++I++LP  +F 
Sbjct: 470 ----TRTREYLLENCQLQSIISLPQGVFL 494


>gi|189499173|ref|YP_001958643.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189494614|gb|ACE03162.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 775

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 53/258 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N YE+L+    S+   G   F TPR ++     ++          +P     + DP C
Sbjct: 134 LGNAYEYLLSIMSSQGDAG--QFRTPRHIIDFIVDVV----------NPTKADKVLDPAC 181

Query: 215 GTGGFLTDAMNHVAD----CGSHHKIPPILVP----------HGQELEPETHAVCVAGML 260
           GTGGFL  +  H+ +         K    L P           G +++P    +    M 
Sbjct: 182 GTGGFLVSSYKHILEQHDGKDDPKKKEKPLTPDERKKLMTNFEGYDIDPTMVRIAQVNMY 241

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + + + +P+      I Q  +LS +     +F   L+NPPF       K  ++   K   
Sbjct: 242 LHQFK-NPK------IFQYDSLSSEERWNDKFDVILANPPF----MSPKGGIKPHSKF-- 288

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  +P  S   +LF+ ++ N L       GRA I++    +F  ++G+   ++R+ 
Sbjct: 289 ------SIPS-SRSEVLFVDYIMNHLR----PKGRAGIIVPEGIIF--QSGTAHKQLRKN 335

Query: 381 LLENDLIEAIVALPTDLF 398
           L+E+ L  A+V+LP+ +F
Sbjct: 336 LVEDGLY-AVVSLPSGVF 352


>gi|224543620|ref|ZP_03684159.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523446|gb|EEF92551.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM
           15897]
          Length = 494

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 117/282 (41%), Gaps = 45/282 (15%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I ++    LL K+     G+    +T    +  ++YE+L+ +  +  + G   F TPR 
Sbjct: 122 AIFKIPTPNLLQKVVTGIEGL----NTEEADIKGDLYEYLLNKLNNSGTNGQ--FRTPRH 175

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++++   L+           P    T+ DP  GT GFL  A  ++ +      +   L  
Sbjct: 176 IINMMVNLV----------KPVPTDTICDPAMGTAGFLIGAEEYLREKHEELFLDDKLKE 225

Query: 243 HGQE-----LEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           H         + ++  + +  M LI     +P+      I+   +LS+      ++   L
Sbjct: 226 HFNNKMFNGFDMDSTMLRIGAMNLISHYVDNPQ------IEYRDSLSQQNIDENKYSLIL 279

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K   D + V +   +         + K     +LF+      L++    GGR 
Sbjct: 280 ANPPF--KGSLDYEVVAENLLS---------VCKTKKTELLFIALFLRSLQV----GGRC 324

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           A ++    LF   +      IR+ L+EN+ + A++++P+ +F
Sbjct: 325 ACIVPDGVLFG--SSKAHKSIRKELVENNQLHAVISMPSGVF 364


>gi|315446768|ref|YP_004079647.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315265071|gb|ADU01813.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 694

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 115/296 (38%), Gaps = 45/296 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +  +     GIE      PDR ++   + ++RR   E    A   +    +V+   + LL
Sbjct: 162 IAAVVSAVDGIE------PDR-LAIAADEVLRRGSGERGRAAGYGVGEHGIVNSRVSELL 214

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                L   + G++   YDP CG    L       A  G        LV          H
Sbjct: 215 S---NLASSTKGLV---YDPACGIAEALVRTRTKRAGGGR-------LV---------GH 252

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + V  + I R+ S    +L    +    L +D     R    ++ PPFG  W + ++  
Sbjct: 253 DINVRAIRIARMRSF-LHELDAEFECADVLLEDPAPDLRADTVVAEPPFGMDWSRSQNIA 311

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +         R+  G+P  ++  + +L H    L+  P G   A +V S++PL    A  
Sbjct: 312 DP--------RWAFGIPPANNSELAWLQHAIAHLK--PEGS--AYVVTSTAPLT---ARG 356

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
             + IR  LL +  IEA++ LP  +   T I   LW+L           V LI+A+
Sbjct: 357 SSAAIRAELLRSGWIEAVILLPPKMLPHTTIPVALWVLRQADHPSNTVDVLLIDAS 412


>gi|269966770|ref|ZP_06180845.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828630|gb|EEZ82889.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 452

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 59/305 (19%)

Query: 124 IARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           I  +  A LL ++ +  S I+++  DT  D     +YE+L+ +       G   F TPR+
Sbjct: 30  IFMIPSAKLLDQVVQLLSAIDMNDKDTKGD-----LYEYLLSKLQQSGVNGQ--FRTPRN 82

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++ +   L+           P +  T+ DP+ GT GFL  A+ +V +  +     P    
Sbjct: 83  IIQMMVELM----------QPKVGDTICDPSSGTCGFLMAAVEYVEEHHAKEVNKPDNRK 132

Query: 243 H-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHY 294
           H       G + +     +    ML+  +E +P      ++Q QG     D    + ++ 
Sbjct: 133 HFNNEMFTGFDFDKHMLRIGAMNMLLHGIE-NPSVHYRDSLQDQG-----DENISEAYNL 186

Query: 295 CLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISD------------------ 333
            L+NPPF    + D    D +    KN  + +  P      D                  
Sbjct: 187 ILANPPFKGSVDFDIVAPDLLRALGKNPVVKKTAPKFKTEIDEDGNEVQVEVKKKKPTEK 246

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL  +   L++    GGRAA+++    LF   +      IR+ ++++  +EA+++L
Sbjct: 247 SELLFLALILRMLKV----GGRAAVIIPDGVLFG--STKAHKTIRQKIVQDQKLEAVISL 300

Query: 394 PTDLF 398
           P+ +F
Sbjct: 301 PSGVF 305


>gi|189467553|ref|ZP_03016338.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM
           17393]
 gi|189435817|gb|EDV04802.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM
           17393]
          Length = 498

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 120/287 (41%), Gaps = 55/287 (19%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T+ ++  A LL ++ ++   I     +    +M ++YE+++    +  + G   F TPR 
Sbjct: 125 TVFQITNARLLSRVIESIENIT----SDGADMMGDVYEYMLGIMAASGTNG--QFRTPRH 178

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-- 240
           ++ +   L+           P +  T+ DP  G+ GF+ +A   +    + H+   +L  
Sbjct: 179 IIRMMVELM----------RPTLNDTICDPAMGSAGFIMEAAKFI----TEHQSDDLLNI 224

Query: 241 ---------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                    + HG + +     +    M++  ++         N+   ++LS +     R
Sbjct: 225 GEGDRFRKEIFHGSDSDASMLRIGCMNMMLHDVDE-------PNLYYRNSLSDENNDTNR 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +  CL+NPPF    + D           ++        K     +LFL  +   L+    
Sbjct: 278 YTLCLANPPFAGSLDTD-----------DIAHTLKAAVKTKKTELLFLALMMRMLQ---- 322

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            GGR A ++  + L  G A + ++ IR  L++   ++A++ +P+ +F
Sbjct: 323 SGGRCASIVPDTVL-TGDAQAYKT-IRSALVDKHCMQAVITMPSGVF 367


>gi|21229249|ref|NP_635171.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907823|gb|AAM32843.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 504

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 66/292 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  +IYE+L+ +  +    G   F TPR ++ +   L+ DPD         +   + DP 
Sbjct: 142 VQGDIYEYLLSQLATAGKNGQ--FRTPRHIIRMIVELV-DPD---------VNDRICDPA 189

Query: 214 CGTGGFLTDAM--------------------------NHVADCGSHHKIPPILVPHGQEL 247
           CGT GFL  A                           +H+ +  +  K+      +G + 
Sbjct: 190 CGTAGFLFTAYRYILKKYTSPDMVTEDEEGDWHGLIGDHITEQNAWDKLHQDTF-YGFDF 248

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  M++  +++        +I+   TLS      + F   L+NPPF      
Sbjct: 249 DSTMVRIALMNMVLHGIKA-------PHIESTDTLSNQYSGEEAFTVILANPPF------ 295

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            K +++K   N    R   G  K     +LF+  +   LE+    GG+  +++    LF 
Sbjct: 296 -KGSIDKNDIN---DRLTLGTTKT---ELLFVEKMYRMLEI----GGKCGVIVPDGVLFG 344

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
             + +   ++R+ LLE   +E IV++P+ +F     ++T + I +N    E+
Sbjct: 345 --SSNAHRDLRKLLLEKCQLEGIVSMPSGVFKPYAGVSTAVLIFTNGGNTEK 394


>gi|317488606|ref|ZP_07947149.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831646|ref|ZP_08164863.1| N-6 DNA Methylase [Eggerthella sp. HGA1]
 gi|316912258|gb|EFV33824.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486517|gb|EGC88966.1| N-6 DNA Methylase [Eggerthella sp. HGA1]
          Length = 495

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 61/276 (22%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  + G  +F TPR V      +L          +P +  ++ D  CGTG
Sbjct: 151 IYEIILKDLQSAGNAG--EFYTPRAVTDFMAEML----------APKLGESVADFACGTG 198

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPET----------HAVCVAGMLIRRLESD 267
           GFLT A+  +A          +  P  QEL  ++          + +C+  ML+  ++  
Sbjct: 199 GFLTSALKLLA--------KQVNTPSDQELYSKSIYGIEKKQLPYLLCITNMLLHDID-- 248

Query: 268 PRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                +  +   ++L  D+       G +F   L NPP+G     +K +++         
Sbjct: 249 -----NPQVFHDNSLEHDVRDYRHKEGGQFDVVLMNPPYGG---SEKASIQNNF------ 294

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
              P   + S+ + LFL  +  +L+      GR A+++    LF   A   + EI+R LL
Sbjct: 295 ---PTALRSSETADLFLALILYRLK----KNGRVAVIIPDGFLFGQDA--AKVEIKRRLL 345

Query: 383 ENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           ++  +  +V +P  +F   T I T +    N    E
Sbjct: 346 KDMNLHTVVRMPQSVFAPYTPITTNILFFDNTGKSE 381


>gi|227872199|ref|ZP_03990565.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268]
 gi|227841955|gb|EEJ52219.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268]
          Length = 500

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 107/255 (41%), Gaps = 48/255 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+ +       G   F TPR ++ +   L+           P    ++ DP 
Sbjct: 153 IRGDVYEYLLSKIAQSGVNGQ--FRTPRHIIRMMVELM----------DPNPKDSICDPA 200

Query: 214 CGTGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           CGT GFL  + +++ +             +H +  +   HG +++     +    M+   
Sbjct: 201 CGTSGFLVASGDYLRERYKKEVLLDKQNRNHFMNDMF--HGYDMDRTMLRIGAMNMMTHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+        +I+   +LS      + +   L+NPPF  K   D D +  + +      
Sbjct: 259 VEN-------PSIEYRDSLSDQNPDKELYSLILANPPF--KGNLDADTISTDLQK----- 304

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LF+      L++    GGR A ++    LF   + +    +R+ ++E
Sbjct: 305 ----MCKTKKTELLFIALFVRMLKI----GGRCACIVPDGVLFG--SSNAHKALRKEIVE 354

Query: 384 NDLIEAIVALPTDLF 398
           N  +EA++++P+ +F
Sbjct: 355 NQRLEAVISMPSGVF 369


>gi|77413781|ref|ZP_00789961.1| N-6 DNA Methylase family [Streptococcus agalactiae 515]
 gi|77160143|gb|EAO71274.1| N-6 DNA Methylase family [Streptococcus agalactiae 515]
          Length = 487

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 59/277 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            ++IYE +++   S  + G  +F TPR        +L           P +  T+ D  C
Sbjct: 147 FNDIYEKILKDIQSAGNSG--EFYTPRAATDFIAEML----------DPKLGETMADLAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLIRRLESDPR 269
           GTGGFLT  +N+++      K    +  + Q     E +   H + V  + +  ++ DP+
Sbjct: 195 GTGGFLTSTLNYLS---KQRKTSEDIQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-DPK 250

Query: 270 RDLSKNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 I  G+TL K++  +T  ++F   + NPPFG     + D ++            P
Sbjct: 251 ------IIHGNTLEKNVREYTDDEKFDLIMMNPPFGG---SELDTIKNNF---------P 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
              + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ ++  L+E  
Sbjct: 293 AELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKEKLVEEF 344

Query: 386 LIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
            +  I+ LP  +F       TNI   L+    +KTE+
Sbjct: 345 NLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEQ 378


>gi|257794242|ref|ZP_05643221.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
 gi|257788214|gb|EEV26554.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
          Length = 237

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 51/244 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 12  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 65

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 66  YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 124

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 125 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGF 219
           +G  
Sbjct: 234 SGSL 237


>gi|311113527|ref|YP_003984749.1| type I restriction-modification system DNA-methyltransferase
           [Rothia dentocariosa ATCC 17931]
 gi|310945021|gb|ADP41315.1| type I restriction-modification system DNA-methyltransferase
           [Rothia dentocariosa ATCC 17931]
          Length = 502

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 48/276 (17%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            LL K+    S I +      DR    +IYE+++ +  +  + G   F TPR ++HL   
Sbjct: 130 ALLAKVVDPLSAIPMD-----DRDTNGDIYEYMLSKIAASGTNG--QFRTPRHIIHLMVD 182

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP------- 242
           ++          +P    T+ DP CGT GFL  A  +V +         + +        
Sbjct: 183 MV----------APTAADTICDPACGTAGFLVAANEYVREHSVQELTNTVALRHYHNDMF 232

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           HG + +     +    +L+  ++ +P  +   ++ +G+    +     ++   L+NPPF 
Sbjct: 233 HGFDFDSTMLRIASMNLLMHGVK-NPLVEYRDSLSEGAAGESE-----KYSLILANPPFT 286

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              + ++ A + +               +       L        L P  GGRAA ++  
Sbjct: 287 GSIDYEQTARDLQS-------------TVKTKKTELLFLALFLRLLKP--GGRAAAIVPD 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             LF   + +   ++R+ L+E+  ++A+V+LP+ +F
Sbjct: 332 GVLFG--SSTAHKKLRKMLVEDQKLDAVVSLPSGVF 365


>gi|165976839|ref|YP_001652432.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876940|gb|ABY69988.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 489

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 43/262 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V      ++           P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMAKMI----------KPRLGEKIADFACGT 196

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GGFLT A+  +           +L    +G E +   H +C+  +L+  ++       + 
Sbjct: 197 GGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NP 249

Query: 275 NIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           N+   + L    KD     +F   L NPP+G         +E+   N       P   + 
Sbjct: 250 NVHHDNALEKPVKDYTENDKFDVILMNPPYGGS------EIEQIKTN------FPSALRS 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++
Sbjct: 298 SETADLFMSVIMYRLK----KNGRVAIVLPDGFLFG--TDNAKMAIKQKLMSEMNLHTVI 351

Query: 392 ALPTDLFF-RTNIATYLWILSN 412
            LP  +F   T+I T +    N
Sbjct: 352 RLPHSVFAPYTSITTNILFFDN 373


>gi|229824144|ref|ZP_04450213.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271]
 gi|229786498|gb|EEP22612.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271]
          Length = 424

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 122/316 (38%), Gaps = 73/316 (23%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           +DF TP++V HL  ++             G   ++ D   GTGG      N   +    +
Sbjct: 66  QDF-TPKEVAHLVNSI------------SGPATSVADICAGTGGLTIKKWNEQREAECFY 112

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------- 287
                   + +E       + +  + IR + ++        I     L++++F       
Sbjct: 113 --------YMEEFASRAIPILIFNIAIRNMNAE--------IVHCDALTQEVFGIYRLIP 156

Query: 288 -------------TGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKIS 332
                        TG+  F   + NPP+   W  DK  +          RF G G+   S
Sbjct: 157 GDRFSTVEKVTERTGRTDFDAVIMNPPYSLTWSGDKSLIND-------PRFSGYGVAPKS 209

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H    L +    G   AI L    LF G A   E EIR  L+    +E ++ 
Sbjct: 210 KADYAFILH---GLAILKETGTLVAI-LPHGVLFRGAA---EGEIRTELIRRRQLETVIG 262

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF  T+I   L IL  ++ +E    V  I+A+  +     +GK +  ++D+    I
Sbjct: 263 LPDNLFLNTSIPVALLILKKKREDE---DVYFIDASKEFI----KGKAQNNLSDEHVDNI 315

Query: 453 LDIYVSREN-GKFSRM 467
           L  Y  R N  KFS +
Sbjct: 316 LTAYRLRRNIDKFSNL 331


>gi|257794185|ref|ZP_05643164.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
 gi|257788157|gb|EEV26497.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
          Length = 199

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 15/134 (11%)

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +G   PK S     F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E
Sbjct: 4   YGKLAPK-SKADFAFIQHMVHYLD----DEGTMAVVLPHGVLFRGAA---EGVIRRYLIE 55

Query: 384 -NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             + +EA++ LP ++F+ T+I T   IL  +K  ++   V  I+A++ +     +GK + 
Sbjct: 56  EKNYLEAVIGLPANIFYGTSIPT--CILVFKKCRQQDDNVLFIDASNDF----EKGKNQN 109

Query: 443 IINDDQRRQILDIY 456
            ++D Q  +I+D Y
Sbjct: 110 HLSDAQVERIIDTY 123


>gi|331085651|ref|ZP_08334734.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406574|gb|EGG86079.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 687

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 104/252 (41%), Gaps = 48/252 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ +   ++           P     + DP CGT
Sbjct: 344 DVYEYLLSKLATAGVNG--QFRTPRHIIRMMVEMM----------DPKADEIICDPACGT 391

Query: 217 GGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            GFL  A  ++ +             +H +  +   HG +++     +    M+   ++ 
Sbjct: 392 SGFLVSASEYLKETKKEEVFFNKQNKNHYMNHMF--HGFDMDRTMLRIGAMNMMTHGVD- 448

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  I+   +LS      +++   L+NPPF  K   D D V  +           
Sbjct: 449 ------NPYIEYRDSLSDQNSDKEKYSLILANPPF--KGSLDYDTVSADLLK-------- 492

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LFL      L++    GGR A ++    LF   +     +IR+ ++E + 
Sbjct: 493 -VCKTKKTELLFLALFIRMLKI----GGRCACIVPDGVLFG--SSKAHKDIRKAIVEENR 545

Query: 387 IEAIVALPTDLF 398
           +EA++++P+ +F
Sbjct: 546 LEAVISMPSGVF 557


>gi|282864680|ref|ZP_06273735.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282560619|gb|EFB66166.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 663

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 34/215 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-S 266
           T++DP CG+G  L+ A    +               G EL        +A +   RL  +
Sbjct: 175 TVFDPACGSGHLLSAAAGQASG--------------GVELYGCEIDSALAELAEARLAFA 220

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFG 325
              RD+   I    +L  D +   R    L NPPF ++ W  ++ A +         R+ 
Sbjct: 221 GDERDVRTRITAVDSLRDDPYPDLRADIALCNPPFNERDWGYEELATDP--------RWV 272

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GLP  ++  + ++ HL  +L      GG A +VL  + + + RAG     IR  LL + 
Sbjct: 273 HGLPPRTEPELAWVQHLLARL----RSGGTAVVVLPPA-VASRRAGR---RIRGSLLRHG 324

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ++ A+VALP       +++  LWIL  R  +ER G
Sbjct: 325 VLRAVVALPPGCAQPHSVSLQLWIL--RAGDERTG 357


>gi|303250875|ref|ZP_07337068.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307246972|ref|ZP_07529036.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253061|ref|ZP_07534945.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255980|ref|ZP_07537776.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259760|ref|ZP_07541480.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262530|ref|ZP_07544172.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302650290|gb|EFL80453.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852114|gb|EFM84355.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306859472|gb|EFM91501.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861070|gb|EFM93068.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866150|gb|EFM98018.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306867765|gb|EFM99599.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 489

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 43/262 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V      ++           P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMAKMI----------KPRLGEKIADFACGT 196

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GGFLT A+  +           +L    +G E +   H +C+  +L+  ++       + 
Sbjct: 197 GGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NP 249

Query: 275 NIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           N+   + L    KD     +F   L NPP+G         +E+   N       P   + 
Sbjct: 250 NVHHDNALEKPVKDYTENDKFDVILMNPPYGGS------EIEQIKTN------FPSALRS 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++
Sbjct: 298 SETADLFMSVIMYRLK----KNGRVAIVLPDGFLFG--TDNAKMAIKQKLMSEMNLHTVI 351

Query: 392 ALPTDLFF-RTNIATYLWILSN 412
            LP  +F   T+I T +    N
Sbjct: 352 RLPHSVFAPYTSITTNILFFDN 373


>gi|332142754|ref|YP_004428492.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332142824|ref|YP_004428562.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552776|gb|AEA99494.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552846|gb|AEA99564.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 548

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 128/302 (42%), Gaps = 69/302 (22%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA- 187
           AGLL ++      I++      DR    ++YE+++ +  S  + G   F TPR ++ +  
Sbjct: 120 AGLLDRVVTMIDKIDMD-----DRDTKGDLYEYMLSKLQSSGTNG--QFRTPRHIIQMMV 172

Query: 188 --TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
             TA  LD + +           + DP  GT GFL  A  +V +      + P    H  
Sbjct: 173 QMTAPKLDGNKS---------DVICDPASGTCGFLMAAEEYVRNTQGGALMRPENSKHFH 223

Query: 246 E-----LEPETHAVCVAGM--LIRRLES---DPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  + + H + +  M  ++  +E    + R  LS    QG    KD FT       
Sbjct: 224 NQMFNAYDFDQHMLRIGAMNLMLHGVEHPVVEYRDSLS---DQGEHNIKDKFT-----LI 275

Query: 296 LSNPPF-----------------GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           L+NPPF                 GK  +K     E + +  +  + GP     S+ + L 
Sbjct: 276 LANPPFKGSVSYDDLAPDLLTALGKTPKKATAKTETDEEGNKKKKKGP-----SEKTELL 330

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES--EIRRWLLENDLIEAIVALPTD 396
            + L  ++  P   GGRAA+V+    LF    GS +S  EIR+ L+E   +EA+V+LP+ 
Sbjct: 331 FLALILRMLQP---GGRAAVVVPDGVLF----GSTKSHKEIRKTLVEEHKLEAVVSLPSG 383

Query: 397 LF 398
           +F
Sbjct: 384 VF 385


>gi|257793832|ref|ZP_05642811.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
 gi|257787804|gb|EEV26144.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
          Length = 298

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 51/244 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
           A L   +W  A DL G+   ++F   IL     R L      +  A +E   A  G +I 
Sbjct: 73  AELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFL------SEKAEQEYADALSGEDIT 126

Query: 68  ------------DLES-FVKVAGYSF------------YNTSEYSLSTLGSTNTRNNLES 102
                       DL++  +   GY                T ++ +  L +T  R    S
Sbjct: 127 YQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETS 185

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE-LHPDTVPDRVM 155
            +   S+N    +F D D SST  RL     E+  L+ K+  N   +  +H D   D ++
Sbjct: 186 TLGEESENDFIGLFSDMDLSST--RLGNNVKERTALISKVMVNLDDLPFVHSDMEID-ML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGF 219
           +G  
Sbjct: 295 SGSL 298


>gi|303253792|ref|ZP_07339927.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248452|ref|ZP_07530472.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647376|gb|EFL77597.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855020|gb|EFM87203.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 489

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 43/262 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V      ++           P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMAKMI----------KPRLGEKIADFACGT 196

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GGFLT A+  +           +L    +G E +   H +C+  +L+  ++       + 
Sbjct: 197 GGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NP 249

Query: 275 NIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           N+   + L    KD     +F   L NPP+G         +E+   N       P   + 
Sbjct: 250 NVHHDNALEKPVKDYTDSDKFDVILMNPPYGGS------EIEQIKTN------FPSALRS 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++
Sbjct: 298 SETADLFMSVIMYRLK----KNGRVAIVLPDGFLFG--TDNAKVAIKQKLMTEMNLHTVI 351

Query: 392 ALPTDLFF-RTNIATYLWILSN 412
            LP  +F   T+I T +    N
Sbjct: 352 RLPHSVFAPYTSITTNILFFDN 373


>gi|82546467|ref|YP_410414.1| type I restriction enzyme M protein [Shigella boydii Sb227]
 gi|81247878|gb|ABB68586.1| putative type I restriction enzyme M protein [Shigella boydii
           Sb227]
 gi|320185254|gb|EFW60031.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella flexneri CDC 796-83]
 gi|332087071|gb|EGI92205.1| N-6 DNA Methylase family protein [Shigella boydii 3594-74]
          Length = 544

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 69/322 (21%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGINGQ--FRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 220

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +++ P   
Sbjct: 221 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDA-PDIH 279

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               + Q  + +    +   F+  L+NPPF G   E+D D+                + K
Sbjct: 280 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLS------------AMVK 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +E +
Sbjct: 328 TKKTELLFLARILQMLKV----GGRSATIVPQGVLFG--SSKAHQSLRKTLVEDNQLETV 381

Query: 391 VALPTDLFF-RTNIATYLWILS 411
           + LP+ +F     +AT + I +
Sbjct: 382 INLPSGVFKPYAGVATAILIFT 403


>gi|262183026|ref|ZP_06042447.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 533

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 50/253 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  + G   F T   ++ L  AL+           P   + + DP CGT
Sbjct: 151 DLYEYMLDKLSTSGTNGQ--FRTTSHIIELLVALM----------EPTPQQRIIDPACGT 198

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A + +A    HH    +               G + +     +    M +   E
Sbjct: 199 AGFLVAANDWIA----HHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFE 254

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +P      ++QQ  T   +      F   L+NPPF      DKDAV+            
Sbjct: 255 -EPNISYRDSLQQLPTTFDE-----AFDLVLANPPFAGSL--DKDAVD------------ 294

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P L  ++      ++ +   L+L    GGRAA+++    LF   +      +R+ L+E+ 
Sbjct: 295 PKLKSVTTAKKTEILFVHRFLQL-LKPGGRAAVIVPEGVLFG--STKAHKALRKTLVEDQ 351

Query: 386 LIEAIVALPTDLF 398
            ++A++ LP+ +F
Sbjct: 352 RLDAVIKLPSGVF 364


>gi|317048486|ref|YP_004116134.1| N-6 DNA methylase [Pantoea sp. At-9b]
 gi|316950103|gb|ADU69578.1| N-6 DNA methylase [Pantoea sp. At-9b]
          Length = 632

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 52/222 (23%)

Query: 208 TLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIR 262
           T++DP CGTGGFL  AM+ +   C +  +   +    L+  G E +P  +A+  + M++ 
Sbjct: 344 TVFDPCCGTGGFLVSAMHQMFKKCITEDEKARVKQYGLI--GVEQQPNMYALAASNMIL- 400

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                 R D   N+ QGS     +      ++    + NPP+ +K               
Sbjct: 401 ------RGDGKANLHQGSCFDDAITKEINSRQPDIGMINPPYAQK--------------- 439

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                G GL +++     F+ H+ + L +   GG   AIV  S  +          E + 
Sbjct: 440 -----GKGLHELA-----FVEHMLDCLRV---GGIGIAIVPMSCVI-------TPHETKH 479

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            LL    +EA++++P +LF      T + + +  K  E  G+
Sbjct: 480 TLLSKHCLEAVMSMPDELFTPVGTITCIMVFTAHKPHEAEGR 521


>gi|300702437|ref|YP_003744037.1| type I restriction enzyme (hsdm) [Ralstonia solanacearum CFBP2957]
 gi|299070098|emb|CBJ41385.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           CFBP2957]
          Length = 481

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 109/284 (38%), Gaps = 56/284 (19%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL K+ +    I LH   V       +Y+ L+ R   +  +G + F TPR +V  
Sbjct: 120 LPTPALLDKVVQQLDAIPLHRRDV----RGAVYDALLGRI-PQAGQGGQ-FHTPRHIVRF 173

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------ADCGSHH 234
             AL            P    TL DP  GTGGFL  A  ++                 HH
Sbjct: 174 MVAL----------TRPAPSDTLCDPAAGTGGFLAAAGEYLRREHPGLLHDTQQAAHFHH 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +      HG E++     +    +L+  +E    RD        +    D      +  
Sbjct: 224 GM-----FHGYEIDRTMLRIGSMNLLLHGVEGPNLRD------HDALAPTDTNEAGAYSL 272

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L++PPF    + D  +V+ +     L R      +     +LFL    + L      GG
Sbjct: 273 VLAHPPF--TGDVDHGSVDPD----LLHRV-----RTRKAELLFLARCLHLLR----PGG 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           RAA+++    LF   +G     +RR L+EN  +E ++ LP  +F
Sbjct: 318 RAAVIVPDGVLFG--SGIAHRTLRRMLVENHQLEGVIKLPAGVF 359


>gi|291540211|emb|CBL13322.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 269

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 112/270 (41%), Gaps = 29/270 (10%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPT 213
           + I+E+LI+ +  +  + AE + TP  +  +   +++          P  ++  T+YDP 
Sbjct: 22  ATIFEYLIKDYNKDFGKYAE-YYTPHSIASIIARIMV----------PEGVQNVTVYDPA 70

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  +    + + +         I     + L        +   L   +  D      
Sbjct: 71  AGSGTLVLALAHEIGESNCTIYTQDISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQ 130

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
              +Q + L K       F Y +SNPPF   +  ++D +  +          P +P  + 
Sbjct: 131 HLNRQKNGLMK-------FDYIVSNPPFNVDFSDNRDTLAGDIYKERFWAGVPNVPNKNK 183

Query: 334 GSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            SM    +FL H+   ++     GGRAA+V+ +  L  G       +IR  ++E+ ++  
Sbjct: 184 DSMAIYQMFLQHIIFSMK---ENGGRAAVVVPTGFLTAGT--RIPKKIRERIVEDRMLRG 238

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +V++P+++F  T     +  L N K+  R+
Sbjct: 239 VVSMPSNIFATTGTNVSVLFLDNSKSMSRQ 268


>gi|167767097|ref|ZP_02439150.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|167711072|gb|EDS21651.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|291559568|emb|CBL38368.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 573

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 129/286 (45%), Gaps = 51/286 (17%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V+LAT +L   ++ +            D  CG G FL +A+    D  S +    
Sbjct: 119 TPESIVNLATRILNINNEKV-----------ADFCCGVGNFLINAIEQ--DKNSKY---- 161

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +G  +E  TH   ++ + +  L SD        I+QG+    DL   K+F     +
Sbjct: 162 ----YG--IEINTHYKEISNIRLN-LISDYTE-----IEQGTVF--DLNMDKKFDKIFCD 207

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            P+     K    + KE K  E     P + K+     LF+M++   L+      G+A +
Sbjct: 208 YPWN--ILKHNTGINKE-KLQEFESVVPEIKKVVKSDWLFIMNVERHLK----SNGKAVV 260

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + ++   +NG     + +IR   L+  LIEA+++LP +L+  T I   + +LS     + 
Sbjct: 261 IATNGTTWNGGI---DKKIRERFLKMGLIEAVISLPANLYSTTAIPVSMIVLS-----KS 312

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGK 463
              V++++A     S+ + G+++ +++++   QI+ +     EN K
Sbjct: 313 NKMVRMVDA----RSMASVGRRQNVLSNETIDQIVHMMTEDTENSK 354


>gi|29830085|ref|NP_824719.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces avermitilis MA-4680]
 gi|29607195|dbj|BAC71254.1| putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces avermitilis
           MA-4680]
          Length = 678

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 39/253 (15%)

Query: 192 LDPDD--ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L P D  AL  +  G  R+  DP CGTG  L          G+  ++      +GQ+  P
Sbjct: 186 LTPGDLAALMADLAGPARSFLDPACGTGALL-----RAVAPGTDQEL------YGQDSAP 234

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKD 308
           E     +A +   RL    R  +   +  G +L  D +   R    L +PPF ++ W  D
Sbjct: 235 E-----LAELTALRLALHTRAAVRTAV--GDSLRADAYETLRADAVLCHPPFNERNWGHD 287

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           + A +         R+  G P  ++  + ++ H   +L    +GG   A++L      + 
Sbjct: 288 ELAYDP--------RWEYGFPARTESELAWVQHALARLR---DGG--TAVLLMPPAAASR 334

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           R+G     IR  LL    + A++ALP       NI  +LW+L  R+ E    + +++ A 
Sbjct: 335 RSGR---RIRADLLRRGALRAVIALPVGAAPPYNIPLHLWVL--RRPERAPAQPEVLLAD 389

Query: 429 DLWTSIRNEGKKR 441
               S   +G+ R
Sbjct: 390 TAGVSEAADGRGR 402


>gi|320352780|ref|YP_004194119.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121282|gb|ADW16828.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobulbus propionicus DSM 2032]
          Length = 484

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 56/291 (19%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++K  L+ ++    +GI+ +     DR +  +IYE L++   S  + G  +F TPR V  
Sbjct: 116 MKKGTLMRQVINKINGIDFNASD--DRHLFGDIYEKLLKDLQSAGNAG--EFYTPRAV-- 169

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILV 241
             T  +++  D      P +  T+ DP CGTGGFL   + H+            I     
Sbjct: 170 --TQFIVEQVD------PRLGETVLDPACGTGGFLVCTIEHLRRQARTAEDERTIQECFT 221

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSN 298
             G E +   H +C+  +++  +      D+   ++  +TL+   +D    +R    ++N
Sbjct: 222 --GIEKKHLPHILCMTNLMLHGI------DVPAGVRHDNTLARPLRDWTRQERVDVIVTN 273

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG     ++D +E         R      + +D  ++ LM L          GGRA +
Sbjct: 274 PPFGG---MEEDGIEANFPAEFRTR------ETADLFLVLLMKLLKP-------GGRAGL 317

Query: 359 VLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLF-----FRTNI 403
           VL    LF    G G ++ I+  LL    +  IV LP  +F      RTN+
Sbjct: 318 VLPDGTLF----GEGVKTRIKETLLTECNLHTIVRLPNGVFNPYTGIRTNL 364


>gi|323160769|gb|EFZ46704.1| type I restriction-modification system DNA methylase domain protein
           [Escherichia coli E128010]
          Length = 40

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           EKD E+G VGYEINFNR+FYQY P R+L  ID E K +
Sbjct: 3   EKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRETKSM 40


>gi|294792926|ref|ZP_06758072.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
 gi|294455871|gb|EFG24235.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
          Length = 492

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 116/267 (43%), Gaps = 53/267 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE +++   S  S G  +F TPR V     A++          +P +   + D  CGT
Sbjct: 150 DIYETILKELQSAGSSG--EFYTPRAVTDFMAAMI----------NPQVGEVMADFACGT 197

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPR 269
           GGFL   +  +     H K+  +          +G E +   + + +  +L+  +++ PR
Sbjct: 198 GGFLISWLKEL-----HKKVETVADEEAYSSSIYGIEKKQFPYMLAITNLLLHDVDT-PR 251

Query: 270 RDLSKNIQQGSTLSKDL--FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 I   ++L KD+  +T K +F   L NPP+G   + D     K H   +L     
Sbjct: 252 ------IFHDNSLVKDVLDYTDKDKFDVILMNPPYGGSEKNDV----KSHFPADLAS--- 298

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S+ + LF+  +  +L+      GRAA++L    LF     + +  I++ LL    
Sbjct: 299 -----SETADLFMSVIMYRLK----NQGRAAVILPDGFLFG--TDNAKVNIKKKLLNEFN 347

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSN 412
           +  I+ LP+ +F   T+I T +    N
Sbjct: 348 LHTIIRLPSSVFSPYTSITTNVLFFDN 374


>gi|301299984|ref|ZP_07206209.1| putative type I restriction-modification system, M subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852375|gb|EFK80034.1| putative type I restriction-modification system, M subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 463

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 64/311 (20%)

Query: 171 SEGAEDFM--TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           S GA+D    T +++  L T L+    + +         ++YDP  GT   L   +N  A
Sbjct: 144 SSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTASLLL-GINQAA 193

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              + +        +GQ++  +     +   ++  +  D         +  +TL+ +   
Sbjct: 194 LKENRY--------YGQDISTQAVKTAIMNAIVNDIAEDKFE-----FKNENTLANNWEF 240

Query: 289 GKRFHYCLSNPPFGKKWEKDKD-AVEKEHKN-GEL------GRFGPGLPKISDGSMLFLM 340
           GK     +S+PP   KW  D++ + ++ +++ GE+      G    G+ K+SD  M+   
Sbjct: 241 GK-VDIVVSDPPINMKWNVDRNLSQDRRYRDYGEMPNKADWGFILDGIDKLSDNGMM--- 296

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                            + +    LF G   + E  IRR LLE+  I A++ LP +    
Sbjct: 297 ----------------VVSVVQGTLFRG---AKEYNIRRKLLEDGKIRAVIQLPGNTKLS 337

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T IAT L +L  RK+ E R  V  INA+  +     E     I+ +    +I+DI+  ++
Sbjct: 338 TTIATCLLVL--RKSSEDRD-VFFINASQEYEKKGLEN----ILTEANVDKIVDIFNEKK 390

Query: 461 NGK-FSRMLDY 470
             K FS +  Y
Sbjct: 391 EEKGFSHVASY 401


>gi|94265771|ref|ZP_01289506.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93453706|gb|EAT04087.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 111/271 (40%), Gaps = 58/271 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE +++   S  + G  +F TPR V                +  P +   + DP C
Sbjct: 144 LGGVYEQILKDLQSAGNAG--EFYTPRAVTRFMVN----------RVDPKLREMVMDPAC 191

Query: 215 GTGGFLTDAMNHVADCGSHHKIPP---------ILVPHGQELEPETHAVCVAGMLIRRLE 265
           GTGGFLT A+ H      H+   P         IL   G E +   H + V  +++  +E
Sbjct: 192 GTGGFLTCAIEHKR---KHYVKTPQDEATLQRSIL---GVEKKSLPHLLAVTNLILHGIE 245

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +         I+  + L++ L +    +R    ++NPPFG     ++D +E         
Sbjct: 246 N------PDQIKHDNALARPLISWSPKERVEVIVANPPFGG---MEEDGIETNFPQALRT 296

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
           R      + +D  +   +HL     L P   GRAA+VL    LF    G G ++ ++  L
Sbjct: 297 R------ETADLFLTLFIHL-----LKPR--GRAAVVLPDGFLF----GEGMKTRLKEKL 339

Query: 382 LENDLIEAIVALPTDLFF-RTNIATYLWILS 411
           L    +  IV LP  +F   T I T L   S
Sbjct: 340 LAECNLHTIVRLPNGVFNPYTGIKTNLLFFS 370


>gi|300215354|gb|ADJ79767.1| Modification subunit [Lactobacillus salivarius CECT 5713]
          Length = 463

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 53/272 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YDP  GT   L   +N   D    +K       +GQE+  +   + +   ++  ++ D
Sbjct: 174 SIYDPALGTASLLL-GINR--DALKENKY------YGQEINTQVIKIAIMNAIVNDVDDD 224

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKN-GEL---- 321
                    +  +TL+ +   GK     +S+PP   KW  D++ + ++ +++ GE+    
Sbjct: 225 KFE-----FKNENTLANNWEFGK-VDIVVSDPPINMKWNVDRNLSQDRRYRDYGEMPNKA 278

Query: 322 --GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             G    G+ K+SD  M+                    + +    LF G   + E  IRR
Sbjct: 279 DWGFILDGIDKLSDNGMM-------------------VVSVVQGTLFRG---AKEYNIRR 316

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LLE+  I A++ LP +    T IAT L +L  RK+ E +  V  INA+  +     E  
Sbjct: 317 KLLEDGKIRAVIQLPGNTKISTTIATCLLVL--RKSSEDKD-VFFINASQEYEKKGLEN- 372

Query: 440 KRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
              I+ +    +I+DI+  ++  K FS +  Y
Sbjct: 373 ---ILTEANVDKIVDIFNEKKEEKGFSHVASY 401


>gi|302520832|ref|ZP_07273174.1| type I restriction enzyme [Streptomyces sp. SPB78]
 gi|302429727|gb|EFL01543.1| type I restriction enzyme [Streptomyces sp. SPB78]
          Length = 506

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 48/275 (17%)

Query: 132 LLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           LL K+     GI +   DT  D     IYE+++ +  +    G   F TPR ++ L   +
Sbjct: 122 LLAKVVDLLDGISMDASDTKGD-----IYEYMLAKIATSGQNG--QFRTPRHIIDLMVEM 174

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPILVPH 243
                       PG    + DP CGT GFL  A +++            H       + H
Sbjct: 175 T----------RPGPRDVICDPACGTAGFLVQAASYMRRVHREELLEAEHRGHFNDKMFH 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G + +     +    ML+  +E+    D+      G + + +    +++   L+NPPF  
Sbjct: 225 GFDFDTTMLRIGSMNMLLHGVENP---DIRYRDSLGESAAGE---AEQYSLILANPPFAG 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             + +  AV+ +            + K     +LFL      ++     GGRAA+++   
Sbjct: 279 SLDYESTAVDLQL-----------IAKTKKTELLFLALFLRLMQT----GGRAAVIVPDG 323

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            LF   +     E+RR L+E+  ++A+V LP+ +F
Sbjct: 324 VLFG--STKAHKELRRMLVEDQQLQAVVKLPSGVF 356


>gi|323340689|ref|ZP_08080941.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091812|gb|EFZ34432.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 47/286 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+     ++   LL+++      ++L  D         IYE +++   S  S G  +F T
Sbjct: 114 FADANNYMKDGVLLHQVINVIDELDL-SDYEESHAFGEIYETILKELQSAGSSG--EFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM----NHVADCGSHHK 235
           PR V      ++           P +   + D  CGTGGF+T  +    N   +      
Sbjct: 171 PRAVTDFMAQMI----------RPQIGEKMADFACGTGGFITSWLKELHNQTKNVDDEEA 220

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRF 292
               +  +G E +   + +C+  ML+  L+          +  G++L +D+       +F
Sbjct: 221 YASSI--YGIEKKQFPYMLCITNMLLHDLD-------VPQVYHGNSLLRDVLDYTEDDQF 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  L NPP+G   + D     K H   +L          S+ + LF+  +  +L+     
Sbjct: 272 NVILMNPPYGGSEKADV----KNHFPADLAS--------SETADLFMSVIMYRLK----Q 315

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            GRAA++L    LF     + +  I++ LL    +  I+ +P+ +F
Sbjct: 316 DGRAAVILPDGFLFG--TDNAKISIKKKLLSEFNLHTIIRMPSSVF 359


>gi|289208799|ref|YP_003460865.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix]
 gi|288944430|gb|ADC72129.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix]
          Length = 495

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 113/271 (41%), Gaps = 56/271 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  IR  G+    G E + TPR ++     ++           P +   +YD   
Sbjct: 157 LSHLYEAKIRNMGNAGRNGGE-YYTPRPLIRAMIQVV----------KPRIGERIYDAAA 205

Query: 215 GTGGFLTDAMNHV----------ADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGM 259
           G+ GFL +A +++             GSH  I  +        + +E +   + + +  +
Sbjct: 206 GSAGFLCEAHDYLRYGPDGQGDGKRDGSHLSISDLNTLQTRTFYAKEKKSLPYVIGIMNL 265

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  +E+        N+   ++L++   D+    RF   L+NPPFG K  K         
Sbjct: 266 ILHGIEA-------PNVIHTNSLTENLSDIQEKDRFDVILANPPFGGKERK--------- 309

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
              E+ +  P   K  + + LFL H    L+     GGR A+V+ ++ L N    S    
Sbjct: 310 ---EVQQNFP--IKTGETAFLFLQHFIKYLK----AGGRTAVVIKNTFLSNSDNAS--RA 358

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           +R+ LL++  +  I+  P   F    + T +
Sbjct: 359 LRKELLQSCNLHTILDCPGGTFLGAGVKTVV 389


>gi|294647362|ref|ZP_06724955.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CC 2a]
 gi|292637321|gb|EFF55746.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CC 2a]
          Length = 530

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 134/321 (41%), Gaps = 49/321 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ 
Sbjct: 161 FSSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNADLHS------MECYDPSA 214

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTG  L  A++H        +         Q          +   L+  L+         
Sbjct: 215 GTGTLLM-ALSHQI---GEERCTIFSQDISQRSNKMLKLNLLLNGLVSSLD--------- 261

Query: 275 NIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           N  QG TL      S D    ++F + +SNPPF   +   ++ +          RF  G+
Sbjct: 262 NAIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGV 316

Query: 329 PKI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRW 380
           P +      SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   
Sbjct: 317 PNVPAKKKESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHK 369

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGK 439
           ++++ ++   V++P+++F  T     +       T +   KV LI+A+ L    ++  G 
Sbjct: 370 IVDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSATTD---KVILIDASKLGEEYKDANGL 426

Query: 440 KRRIINDDQRRQILDIYVSRE 460
           K+  +NDD+  +I+  +  +E
Sbjct: 427 KKVRLNDDEIEKIVGTFQRKE 447


>gi|332201350|gb|EGJ15420.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368]
 gi|332204889|gb|EGJ18954.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 460

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 65/262 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 117 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 164

Query: 215 GTGGFL-----------------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           G+ GFL                 TD +NH      H+++      HG + +     +   
Sbjct: 165 GSAGFLVSASRYLKRKKDEWETNTDNINHF-----HNQM-----FHGNDTDTTMLRLGAM 214

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E       +  I    +LS+D     ++   L+NPPF       K +++    
Sbjct: 215 NMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNST 260

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESE 376
           + +L        K     +LFL      L+     GGRAA+++    LF + +A  G   
Sbjct: 261 SNDL----LATVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG--- 309

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           IR+ ++EN  ++A++++P+ +F
Sbjct: 310 IRQEIVENHKLDAVISMPSGVF 331


>gi|332076170|gb|EGI86636.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41301]
          Length = 497

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 65/262 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 154 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 201

Query: 215 GTGGFL-----------------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           G+ GFL                 TD +NH      H+++      HG + +     +   
Sbjct: 202 GSAGFLVSASRYLKRKKDEWETNTDNINHF-----HNQM-----FHGNDTDTTMLRLGAM 251

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E       +  I    +LS+D     ++   L+NPPF       K +++    
Sbjct: 252 NMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNST 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESE 376
           + +L        K     +LFL      L+     GGRAA+++    LF + +A  G   
Sbjct: 298 SNDL----LATVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG--- 346

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           IR+ ++EN  ++A++++P+ +F
Sbjct: 347 IRQEIVENHKLDAVISMPSGVF 368


>gi|84499587|ref|ZP_00997875.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597]
 gi|84392731|gb|EAQ04942.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597]
          Length = 512

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 55/266 (20%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESP 203
           D +P  DR    ++YE+++ +  S    G   F TPR ++ L   L    PDD       
Sbjct: 138 DQIPMDDRDTKGDLYEYMLGKIASAGQNG--QFRTPRHIIQLMVELTAPTPDD------- 188

Query: 204 GMIRTLYDPTCGTGGFLTDA-----MNHV------ADCGSHHKIPPILVPHGQELEPETH 252
                + DP  GT GFL  A      NH             HK     + HG + +P   
Sbjct: 189 ----VICDPASGTCGFLVAAGEYLRANHPELFRNEKQRAHFHKD----MFHGFDFDPTML 240

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M++  +E     D+S         + D     ++   L+NPPF    + D  A 
Sbjct: 241 RIGAMNMVLHGVED---ADISYRDSLAEEHNAD---AGKYSLILANPPFAGSLDYDSTAK 294

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           + +            + K     +LF+      L+     GGRAA+V+    LF   A  
Sbjct: 295 DLQK-----------IVKTKKTELLFVGLFLRLLKT----GGRAAVVVPDGVLFG--ASK 337

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF 398
              EIRR L+E+  ++A++ LP+ +F
Sbjct: 338 AHKEIRRMLVEDHKLDAVIKLPSGVF 363


>gi|227834296|ref|YP_002836003.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455312|gb|ACP34065.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 590

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 50/253 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  + G   F T   ++ L  AL+           P   + + DP CGT
Sbjct: 208 DLYEYMLDKLSTSGTNGQ--FRTTSHIIELLVALM----------EPTPQQRIIDPACGT 255

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A + +A    HH    +               G + +     +    M +   E
Sbjct: 256 AGFLVAANDWIA----HHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFE 311

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +P      ++QQ  T   +      F   L+NPPF      DKDAV+ + K+    +  
Sbjct: 312 -EPNISYRDSLQQLPTTFDEA-----FDLVLANPPFAGSL--DKDAVDPKLKSVTTAK-- 361

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                    + +  +H   +L  P   GGRAA+++    LF   +      +R+ L+E+ 
Sbjct: 362 --------KTEILFVHRFLQLLKP---GGRAAVIVPEGVLFG--STKAHKALRKTLVEDQ 408

Query: 386 LIEAIVALPTDLF 398
            ++A++ LP+ +F
Sbjct: 409 RLDAVIKLPSGVF 421


>gi|295087099|emb|CBK68622.1| Type I restriction-modification system methyltransferase subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 553

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 49/320 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ G
Sbjct: 185 SSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNADLHS------MECYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A++H        +         Q          +   L+  L+         N
Sbjct: 239 TGTLLM-ALSHQI---GEERCTIFSQDISQRSNKMLKLNLLLNGLVSSLD---------N 285

Query: 276 IQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             QG TL      S D    ++F + +SNPPF   +   ++ +          RF  G+P
Sbjct: 286 AIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGVP 340

Query: 330 KI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
            +      SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   +
Sbjct: 341 NVPAKKKESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHKI 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKK 440
           +++ ++   V++P+++F  T     +       T +   KV LI+A+ L    ++  G K
Sbjct: 394 VDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSATTD---KVILIDASKLGEEYKDANGLK 450

Query: 441 RRIINDDQRRQILDIYVSRE 460
           +  +NDD+  +I+  +  +E
Sbjct: 451 KVRLNDDEIEKIVGTFQRKE 470


>gi|15900769|ref|NP_345373.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae TIGR4]
 gi|15902834|ref|NP_358384.1| type I restriction-modification system M subunit [Streptococcus
           pneumoniae R6]
 gi|111656838|ref|ZP_01407685.1| hypothetical protein SpneT_02001902 [Streptococcus pneumoniae
           TIGR4]
 gi|116515872|ref|YP_816267.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae D39]
 gi|148984620|ref|ZP_01817888.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148988313|ref|ZP_01819760.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993698|ref|ZP_01823145.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|148997030|ref|ZP_01824684.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|149002423|ref|ZP_01827357.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|149007169|ref|ZP_01830833.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010480|ref|ZP_01831851.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484773|ref|ZP_02709718.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1873-00]
 gi|168485835|ref|ZP_02710343.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1087-00]
 gi|168490319|ref|ZP_02714518.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae SP195]
 gi|168490977|ref|ZP_02715120.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493039|ref|ZP_02717182.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575544|ref|ZP_02721480.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae MLV-016]
 gi|169832734|ref|YP_001694340.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Hungary19A-6]
 gi|182683805|ref|YP_001835552.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae CGSP14]
 gi|221231662|ref|YP_002510814.1| type I RM modification enzyme [Streptococcus pneumoniae ATCC
           700669]
 gi|225854392|ref|YP_002735904.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae JJA]
 gi|225856550|ref|YP_002738061.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae P1031]
 gi|225861221|ref|YP_002742730.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650540|ref|ZP_04524792.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822643|ref|ZP_04598488.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229447|ref|ZP_06963128.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254225|ref|ZP_06977811.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503107|ref|YP_003725047.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303260412|ref|ZP_07346381.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP-BS293]
 gi|303262769|ref|ZP_07348707.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265058|ref|ZP_07350972.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS397]
 gi|303267632|ref|ZP_07353470.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS457]
 gi|303269990|ref|ZP_07355722.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS458]
 gi|14972360|gb|AAK75013.1| putative type I restriction-modification system, M subunit
           [Streptococcus pneumoniae TIGR4]
 gi|15458387|gb|AAK99594.1| Type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae R6]
 gi|116076448|gb|ABJ54168.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae D39]
 gi|147756730|gb|EDK63770.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147759360|gb|EDK66352.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|147761207|gb|EDK68174.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764961|gb|EDK71890.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923011|gb|EDK74126.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147925994|gb|EDK77068.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927778|gb|EDK78801.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|168995236|gb|ACA35848.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042062|gb|EDT50108.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629139|gb|ACB90087.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae CGSP14]
 gi|183570929|gb|EDT91457.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1087-00]
 gi|183571347|gb|EDT91875.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae SP195]
 gi|183574577|gb|EDT95105.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC0288-04]
 gi|183577032|gb|EDT97560.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578644|gb|EDT99172.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae MLV-016]
 gi|220674122|emb|CAR68641.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           ATCC 700669]
 gi|225723691|gb|ACO19544.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae JJA]
 gi|225726174|gb|ACO22026.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae P1031]
 gi|225728274|gb|ACO24125.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238702|gb|ADI69833.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794017|emb|CBW36415.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           INV104]
 gi|301799875|emb|CBW32451.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           OXC141]
 gi|301801712|emb|CBW34418.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           INV200]
 gi|302636091|gb|EFL66588.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638447|gb|EFL68913.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP-BS293]
 gi|302640481|gb|EFL70896.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS458]
 gi|302642831|gb|EFL73140.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS457]
 gi|302645418|gb|EFL75651.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS397]
 gi|332073216|gb|EGI83695.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17570]
          Length = 497

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 65/262 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 154 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 201

Query: 215 GTGGFL-----------------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           G+ GFL                 TD +NH      H+++      HG + +     +   
Sbjct: 202 GSAGFLVSASRYLKRKKDEWETNTDNINHF-----HNQM-----FHGNDTDTTMLRLGAM 251

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E       +  I    +LS+D     ++   L+NPPF       K +++    
Sbjct: 252 NMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNST 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESE 376
           + +L        K     +LFL      L+     GGRAA+++    LF + +A  G   
Sbjct: 298 SNDL----LATVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG--- 346

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           IR+ ++EN  ++A++++P+ +F
Sbjct: 347 IRQEIVENHKLDAVISMPSGVF 368


>gi|225858683|ref|YP_002740193.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 70585]
 gi|225720662|gb|ACO16516.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 70585]
          Length = 497

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 65/262 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 154 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 201

Query: 215 GTGGFL-----------------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           G+ GFL                 TD +NH      H+++      HG + +     +   
Sbjct: 202 GSAGFLVSASRYLKRKKDEWETNTDNINHF-----HNQM-----FHGNDTDTTMLRLGAM 251

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E       +  I    +LS+D     ++   L+NPPF       K +++    
Sbjct: 252 NMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNST 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESE 376
           + +L        K     +LFL      L+     GGRAA+++    LF + +A  G   
Sbjct: 298 SNDL----LATVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG--- 346

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           IR+ ++EN  ++A++++P+ +F
Sbjct: 347 IRQEIVENHKLDAVISMPSGVF 368


>gi|149026371|ref|ZP_01836526.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP23-BS72]
 gi|147929333|gb|EDK80332.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP23-BS72]
          Length = 497

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 65/262 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 154 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 201

Query: 215 GTGGFL-----------------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           G+ GFL                 TD +NH      H+++      HG + +     +   
Sbjct: 202 GSAGFLVSASRYLKRKKDEWETNTDNINHF-----HNQM-----FHGNDTDTTMLRLGAM 251

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E       +  I    +LS+D     ++   L+NPPF       K +++    
Sbjct: 252 NMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNST 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESE 376
           + +L        K     +LFL      L+     GGRAA+++    LF + +A  G   
Sbjct: 298 SNDL----LATVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG--- 346

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           IR+ ++EN  ++A++++P+ +F
Sbjct: 347 IRQEIVENHKLDAVISMPSGVF 368


>gi|213964709|ref|ZP_03392909.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium amycolatum SK46]
 gi|213952902|gb|EEB64284.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium amycolatum SK46]
          Length = 531

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 42/251 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M ++YE+++ +     + G   F T + ++ L   L+           P     + DP C
Sbjct: 149 MGDLYEYMLSKLSVSGTNGQ--FRTSQLIIDLMVELM----------RPSPSERIIDPAC 196

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESD 267
           GT GFL +A   + D  S   +   +          G + +     +    M +    S 
Sbjct: 197 GTAGFLVNASEWIRDYHSDELMKKSVRDQFEAHGLTGYDFDSTMVRISAMNMFMHGFNSP 256

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +++     G+   +D    + F   L+NPPF         +V++ + + EL   G  
Sbjct: 257 ---NIAYRDSLGTIPDED---KESFDLILANPPFAG-------SVDESNLDKELTSLG-- 301

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K     +LF+    + L +    GGRAA+++    LF   +      IR+ L+EN  +
Sbjct: 302 --KTKKTELLFINRFLSLLRI----GGRAAVIVPEGVLFG--STKAHKAIRKELVENQKL 353

Query: 388 EAIVALPTDLF 398
           +AI+ LP+  F
Sbjct: 354 DAIIKLPSGAF 364


>gi|307127562|ref|YP_003879593.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 670-6B]
 gi|306484624|gb|ADM91493.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 670-6B]
 gi|332077301|gb|EGI87763.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 497

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 110/262 (41%), Gaps = 65/262 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 154 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 201

Query: 215 GTGGFL-----------------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           G+ GFL                 TD +NH      H+++      HG + +     +   
Sbjct: 202 GSAGFLVSASRYLKRKKDEWETNTDNINHF-----HNQM-----FHGNDTDTTMLRLGAM 251

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E       +  I    +LS+D     ++   L+NPPF       K +++    
Sbjct: 252 NMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNST 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESE 376
           + +L        K     +LFL      L+     GGRAA+++    LF + +A  G   
Sbjct: 298 SNDL----LATVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG--- 346

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           IR+ ++EN  ++A++++P+ +F
Sbjct: 347 IRQEIVENHKLDAVISMPSGVF 368


>gi|294809017|ref|ZP_06767739.1| putative type I restriction-modification system, M subunit
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294443742|gb|EFG12487.1| putative type I restriction-modification system, M subunit
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 553

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 49/320 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ G
Sbjct: 185 SSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNADLHS------MECYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A++H        +         Q          +   L+  L+         N
Sbjct: 239 TGTLLM-ALSHQI---GEERCTIFSQDISQRSNKMLKLNLLLNGLVSSLD---------N 285

Query: 276 IQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             QG TL      S D    ++F + +SNPPF   +   ++ +          RF  G+P
Sbjct: 286 AIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGVP 340

Query: 330 KI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
            +      SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   +
Sbjct: 341 NVPAKKKESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHKI 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKK 440
           +++ ++   V++P+++F  T     +       T +   KV LI+A+ L    ++  G K
Sbjct: 394 VDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSATTD---KVILIDASKLGEEYKDANGLK 450

Query: 441 RRIINDDQRRQILDIYVSRE 460
           +  +NDD+  +I+  +  +E
Sbjct: 451 KVRLNDDEIEKIVGTFQRKE 470


>gi|293115501|ref|ZP_05791808.2| putative type I restriction-modification system, modification
           subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809619|gb|EFF68824.1| putative type I restriction-modification system, modification
           subunit [Butyrivibrio crossotus DSM 2876]
          Length = 587

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 135/295 (45%), Gaps = 62/295 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+FG E SE      TP  +V LA  LL  P++           ++ D   GTG FL+ A
Sbjct: 124 RKFGGE-SE------TPLSIVKLAYGLL-KPEN----------ESIADFCSGTGVFLSYA 165

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGST 281
                + GS +        +G E+            L + L       L+ N  I+QGS 
Sbjct: 166 AQM--NKGSLY--------YGIEI----------NTLAKELSEIRMSLLTDNHLIRQGSV 205

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            S D    + F    S+ P+  + W+ + D    E    E+ +  P L + +     F++
Sbjct: 206 FSMD--ADRTFDKIFSDSPWNVRSWKANSD----EQTINEIEQIVPELKRATTADWHFIV 259

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           ++   L+      G+A +  S+   +NG        IR  +++   +EA+++LP +L+  
Sbjct: 260 NVMRHLK----EEGKAVVTSSNGLTWNGGISKA---IRERIVKLGWLEAVISLPANLYST 312

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           T+I T + +LS +   + +G V+LI+A+D+ T     G+++  ++D+   +IL++
Sbjct: 313 TSIPTSILVLSKK---DNKG-VRLIDASDMATV----GRRQNELDDEAINEILEL 359


>gi|282932025|ref|ZP_06337486.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281303852|gb|EFA95993.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 204

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AIVALP  +
Sbjct: 4   WIEHIISKL----NPDGKAGFVLANGAL--STTLKEELAIRKNLLEADKIDAIVALPDKM 57

Query: 398 FFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           F+ T I   LW +   K  E    RRG+   I+A +L   +    +  R  +D+  ++I 
Sbjct: 58  FYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSDEDIKKIA 114

Query: 454 DIY 456
           D Y
Sbjct: 115 DTY 117


>gi|167761881|ref|ZP_02434008.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC
           43183]
 gi|167700251|gb|EDS16830.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC
           43183]
          Length = 553

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 49/320 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ G
Sbjct: 185 SSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNADLHS------MECYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A++H        +         Q          +   L+  L+         N
Sbjct: 239 TGTLLM-ALSHQI---GEERCTIFSQDISQRSNKMLKLNLLLNGLVSSLD---------N 285

Query: 276 IQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             QG TL      S D    ++F + +SNPPF   +   ++ +          RF  G+P
Sbjct: 286 AIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGVP 340

Query: 330 KI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
            +      SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   +
Sbjct: 341 NVPAKKKESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHKI 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKK 440
           +++ ++   V++P+++F  T     +       T +   KV LI+A+ L    ++  G K
Sbjct: 394 VDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSATTD---KVILIDASKLGEEYKDANGLK 450

Query: 441 RRIINDDQRRQILDIYVSRE 460
           +  +NDD+  +I+  +  +E
Sbjct: 451 KVRLNDDEIEKIVGTFQRKE 470


>gi|315444136|ref|YP_004077015.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315262439|gb|ADT99180.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 477

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 58/260 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V +  +E L+ +  SE  +GA  + TPR ++  +    + PD    K+       + DP 
Sbjct: 118 VKAAAFEGLLEKAASEGKKGAGQYFTPRILIQ-SMVRCVKPDPRASKDF-----KVCDPA 171

Query: 214 CGTGGFLTDA---MNHVADCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLES 266
            GTGGFL  A   +      G+  +     +     +G EL P    + +  + + ++E 
Sbjct: 172 VGTGGFLIAAYEWLKAETKGGAFDRDTAKRIRRQTYYGNELVPRPRRLALMNLYLHQVE- 230

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            PR  L  +I +       +   +R+   L NPPFG K                    G 
Sbjct: 231 -PRITLGDSIYE-------VPGSQRYDVILMNPPFGTK--------------------GA 262

Query: 327 GLP--------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G P        + S+  + FL H+   L+     GGRAA+V+  + LF  +AG    E+ 
Sbjct: 263 GQPPDREDFVVQTSNKQLNFLQHVLTTLK----KGGRAAVVVPDNVLFAQQAG----EVF 314

Query: 379 RWLLENDLIEAIVALPTDLF 398
           + L+E+  +  ++  P   F
Sbjct: 315 QVLMEDCDLHTVLRCPRGTF 334


>gi|312128928|ref|YP_003996268.1| site-specific DNA-methyltransferase (adenine-specific)
           [Leadbetterella byssophila DSM 17132]
 gi|311905474|gb|ADQ15915.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Leadbetterella byssophila DSM 17132]
          Length = 475

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 67/262 (25%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           + + IYE +++   ++   G  +F TPR V      ++          +P +   + DP 
Sbjct: 143 IFNVIYEEILQGLAAKKDTG--EFYTPRAVTQFIVDMV----------NPKLGEKITDPA 190

Query: 214 CGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL   + H    V +      +   +   G EL+P    + V  ++   +E    
Sbjct: 191 CGTGGFLVCTIEHLKRQVKNIDDRKTLQETVT--GSELKPLPFMLSVVNLITHDIE---- 244

Query: 270 RDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 ++ G +LS++  + K   R    ++NPPFG                   G  G 
Sbjct: 245 ---VPQLENGDSLSREYTSIKQKDRVDIIIANPPFG-------------------GVVGD 282

Query: 327 GLPKISDGSMLFLMHLANK---------LELPPNGGGRAAIVLSSSPLFNGRAGSG-ESE 376
           G+         F ++   K                GGRA IVL    L     G G +  
Sbjct: 283 GM------ETNFPLNYRTKESADLFLILFIQLLKDGGRAGIVLPDGSL----TGDGVKQR 332

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           +R+ LLE+  +  IV LP  +F
Sbjct: 333 VRQKLLEDCNVHTIVRLPQSVF 354


>gi|227511526|ref|ZP_03941575.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085260|gb|EEI20572.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
          Length = 193

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 68/120 (56%), Gaps = 12/120 (10%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLWILSN 412
           GR A+VL    LF G A   E +IR++++E D +++A++ +P +LF+ T+I T + +   
Sbjct: 9   GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVLVFDK 65

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            +       +  I+A+  +     +GK +  + D+  ++I+D Y  R++  KF+ + D++
Sbjct: 66  SRINH---DILFIDASKDF----EKGKNQNNLTDENVKKIIDTYKDRKDVKKFAHVADFK 118


>gi|192289909|ref|YP_001990514.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1]
 gi|192283658|gb|ACF00039.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1]
          Length = 513

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 60/259 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+++ +  +    G   F TPR ++ L   +           +P     + DP CG
Sbjct: 153 GDLYEYMLAKIATAGQNG--QFRTPRHIIALMVEM----------TAPTPKDVIVDPACG 200

Query: 216 TGGFLTDA----------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           T GFL  A          + H A+   H         HG + +     +    M +  +E
Sbjct: 201 TCGFLVAAGEFLRDNHPKLFHDAESRDHFNQEMF---HGFDFDGTMLRIGSMNMTLHGVE 257

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWE-----KDKDAVEKEHKNG 319
            DP      +I+   +LS++    + R+   L+NPPF    +     KD  AV K  K  
Sbjct: 258 -DP------DIRYKDSLSQEHAGDEGRYSLVLANPPFAGSLDYETTAKDLLAVVKTKK-- 308

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                          + L  M L  KL  P   GGRAA+++    LF   + +    IR+
Sbjct: 309 ---------------TELLFMALFLKLLKP---GGRAAVIVPDGVLFG--SSTAHKTIRK 348

Query: 380 WLLENDLIEAIVALPTDLF 398
            L+EN  ++ IV LP+ +F
Sbjct: 349 MLVENHRLDGIVKLPSGVF 367


>gi|299137475|ref|ZP_07030657.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8]
 gi|298600880|gb|EFI57036.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8]
          Length = 526

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 105/271 (38%), Gaps = 63/271 (23%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    +    G   F TPR ++ L + L+          +P +   + DP 
Sbjct: 166 IQGDVYEMLLNEISTAGKNG--QFRTPRHIIKLVSELV----------NPQLGHRICDPA 213

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC---VAGMLIRRLESDPRR 270
           CGT GFL DA  ++    +  K         Q L P+        V+GML +  +    +
Sbjct: 214 CGTAGFLLDAYQYIITQLAKKK------KKRQALTPDEDGFVRSSVSGMLTQDNKDILEQ 267

Query: 271 DL-----------------------SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            L                       + N+    TLSK     + +   ++NPPF    +K
Sbjct: 268 SLYGYDFDTTMVRLALMNLMMHGIDNPNVDYQDTLSKKFTEEEEYDIVMANPPFTGSIDK 327

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
             D  E    N             +   +LF   +   L+     GG A I++    LF 
Sbjct: 328 G-DINESLQLN------------TTKTELLFTERIFTLLKT----GGTAGIIIPQGVLFG 370

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +G    E R+ L+E+  ++A+++LP+ +F
Sbjct: 371 --SGGAFVEARKKLVEDAELKAVISLPSGVF 399


>gi|229826015|ref|ZP_04452084.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC
           49176]
 gi|229789757|gb|EEP25871.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC
           49176]
          Length = 500

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 57/276 (20%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +YKI      I++  D         +YE+L+ +       G   F TPR ++ +   L+ 
Sbjct: 142 IYKIMNEIQTIDVRGD---------VYEYLLSKIAQSGLNGQ--FRTPRHIIRMMVELM- 189

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----------GSHHKIPPILVP 242
                    +P     + DP CGT GFL  A  ++ +              H +  +   
Sbjct: 190 ---------NPSADEVICDPACGTSGFLVAAGEYLKENRKEEIFYNRQKKEHYMNHMF-- 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G +++     +    M+   ++       +  I+   +LS       ++   L+NPPF 
Sbjct: 239 YGYDMDRTMLRIGAMNMMTHGID-------NPIIEYRDSLSDWNSDKDKYSLVLANPPF- 290

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K   D D+V     +G+L +    + K     +LFL      L++    GGR A ++  
Sbjct: 291 -KGSLDADSV-----SGDLLK----VCKTKKTELLFLTLFIRMLKI----GGRCACIVPD 336

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             LF   +     +IR+ ++EN  + A++++P+ +F
Sbjct: 337 GVLFG--SSKAHKDIRKEIVENHRLVAVISMPSGVF 370


>gi|167760902|ref|ZP_02433029.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704]
 gi|167661505|gb|EDS05635.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704]
          Length = 304

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 38/225 (16%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNH----VADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           +P +   + D  CGTGGFL  A+ H    V +     ++   ++  G E +P  H +C  
Sbjct: 6   NPQLGEQVLDFACGTGGFLVCALEHLRKQVRNIDDEAQLQNSIL--GVEKKPLPHMLCTT 63

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            +++  ++       +  I+  ++L    K++    +    L+NPPFG   E   D +E 
Sbjct: 64  NLILHNID-------NPQIRHDNSLGYPIKNIKPKDKVDIILTNPPFGGIEE---DGIED 113

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG- 373
                      P   K  + + LFL+ +  KL+      GRAAIVL    LF    G G 
Sbjct: 114 NF---------PANYKTKETADLFLVLMMYKLK----QTGRAAIVLPDGFLF----GEGV 156

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           ++ I+  LL    +  IV LP  +F   T I T L  L    T+E
Sbjct: 157 KTAIKEKLLNEFNLHTIVRLPNGVFSPYTGINTNLLFLERGTTQE 201


>gi|54024027|ref|YP_118269.1| putative restriction-modification system
           endonuclease/methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015535|dbj|BAD56905.1| putative restriction-modification system
           endonuclease/methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 966

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 107/254 (42%), Gaps = 45/254 (17%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D   +++YEHL+ +  +    GA  F TP  +  L  A+           +PG    + D
Sbjct: 139 DAEAADLYEHLLAKVATAGRFGA--FRTPLHLTALMVAM----------TAPGPDDEVCD 186

Query: 212 PTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           PTCGTGG LT A   +  +  G+  +          E+    H       ++R   S  R
Sbjct: 187 PTCGTGGLLTAAAQFMLTSRSGTAQQ-------SKAEVSGRLHGFDFDRTMLRL--SSMR 237

Query: 270 RDL----SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             L    + +++    LS +  T  +R+   L+NPPF         +V+ E    EL   
Sbjct: 238 LALHGYGAADLRHRDNLSVEAGTEFERYSVVLANPPFA-------GSVDYETAAPEL--- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L  +       L  +A    L P  GGRAA+++    LF   A    +E+RR L+E 
Sbjct: 288 ---LAAVRTKKSEILHPIAILRLLKP--GGRAAVIVPDGLLFGSTA--AHAELRRILVEE 340

Query: 385 DLIEAIVALPTDLF 398
             +EA+V LP+  F
Sbjct: 341 HGLEAVVKLPSGTF 354


>gi|312887842|ref|ZP_07747429.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
 gi|311299661|gb|EFQ76743.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
          Length = 295

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 26/158 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           ++ IYE L+ +  SE   GA  + TPR ++++   LL+          P +     DP  
Sbjct: 125 IATIYEELLEKNASEKKSGAGQYFTPRPLINVMVDLLV----------PKLGERWNDPAA 174

Query: 215 GTGGFLTDA-------MNHVADCGS-HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GF+  A        +H  + GS   K        G EL  + H + +    +  LES
Sbjct: 175 GTFGFMIAADYYLKEKHHHYFELGSKERKFQVDEAFSGCELVQDAHRLALMNAKLHGLES 234

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
                    I+ G TLS+   + K F   L+NPPFG K
Sbjct: 235 --------RIEMGDTLSELGKSFKNFDGVLANPPFGTK 264


>gi|194324118|ref|ZP_03057892.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
 gi|194321565|gb|EDX19049.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
          Length = 345

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ +++E+ +  F     +    F TP+ VV L   +L           P   R ++DP 
Sbjct: 154 VLGHVFEYFLGEFALAEGKQGGQFYTPKSVVELLVKML----------EPYKGR-VFDPC 202

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG    +   V    SH      +  +GQE    T  +C   + IR ++S   +  S
Sbjct: 203 CGSGGMFVQSEKFVE---SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNS 259

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL----GRFGPGL 328
               +GS L+ D     +  Y ++NPPF    W            +GEL     R+  G 
Sbjct: 260 ----EGSFLN-DAHKDLKADYIIANPPFNISDW------------SGELLRNDARWQYGT 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           P   + +  ++ H      L P   G A  VL+   L +  +G G++
Sbjct: 303 PPAGNANYAWIQHFL--YHLAPT--GVAGFVLAKGALTSNTSGEGDT 345


>gi|160914344|ref|ZP_02076563.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991]
 gi|158433817|gb|EDP12106.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991]
          Length = 494

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 51/273 (18%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  S G  +F TPR V      ++           P +  T+ D  CGTG
Sbjct: 151 IYESILKELQSAGSSG--EFYTPRAVTDFMAKMI----------EPKIGETMADFACGTG 198

Query: 218 GFLTDAM----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GFLT  +    N +       K    +  +G E +   + +C+  ML+  ++  PR    
Sbjct: 199 GFLTSWIKELENKIQTNEDRRKFDSSI--YGIEKKQFPYMLCITNMLLHGIDI-PR---- 251

Query: 274 KNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+  ++L  D+       +F   L NPP+G   + D     K H   +L         
Sbjct: 252 --IEHDNSLLYDVLDYTDDDKFDVILMNPPYGGNEKSDV----KNHFPSDLAS------- 298

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GR A++L    LF     + +  I++ LL    +  I
Sbjct: 299 -SETADLFMSVIMYRLK----ENGRVAVILPDGFLFG--TDNAKVSIKKKLLNEFNLHTI 351

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V +P  +F     + Y  I +N    ++ GK +
Sbjct: 352 VRMPHSVF-----SPYTSITTNILFFDKTGKTK 379


>gi|315038773|ref|YP_004032341.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276906|gb|ADQ59546.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112]
          Length = 522

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 53/261 (20%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTL 209
           PD V  ++YE+L+ +  +    G   F TPR ++ +   L+   PDD +           
Sbjct: 172 PD-VQGDLYEYLLSKLSTAGRNGQ--FRTPRHIIKMMVKLMNPTPDDKI----------- 217

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------------GQELEPETHAVCVA 257
            DP CGT GFL  A  ++ +     K   I                G +++     +   
Sbjct: 218 ADPACGTSGFLVAAAEYLKNNPETEK--EIFFNREKRNYYKSDMFTGYDMDGTMLRIGAM 275

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M+   + ++P      NIQ   +LS        +   L+NPPF  K   D D V     
Sbjct: 276 NMMTHGI-TNP------NIQYRDSLSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLL 326

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     + K     +LFL      L++    GGR A ++    LF   +      I
Sbjct: 327 K---------VCKTKKTELLFLALFLRMLKV----GGRCACIVPDGVLFG--SSRAHKAI 371

Query: 378 RRWLLENDLIEAIVALPTDLF 398
           R+ L+E + +EA++++P+ +F
Sbjct: 372 RKQLVEENRLEAVISMPSGVF 392


>gi|300858886|ref|YP_003783869.1| hypothetical protein cpfrc_01469 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686340|gb|ADK29262.1| hypothetical protein cpfrc_01469 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206586|gb|ADL10928.1| Hypothetical protein CpC231_1461 [Corynebacterium
           pseudotuberculosis C231]
 gi|308276829|gb|ADO26728.1| Hypothetical protein CpI19_1468 [Corynebacterium pseudotuberculosis
           I19]
          Length = 72

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 10/66 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M   YE+L++RF  +  +   +F TPR VVHL T LL           P    T+YDPTC
Sbjct: 1   MGAAYEYLLKRFVDDAGQKVGEFFTPRSVVHLITRLL----------KPQENETVYDPTC 50

Query: 215 GTGGFL 220
            TGG L
Sbjct: 51  STGGML 56


>gi|311742871|ref|ZP_07716679.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM
           15272]
 gi|311313551|gb|EFQ83460.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM
           15272]
          Length = 484

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 52/254 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  S    G   F TPR ++ L   +           +P     + DP CGT
Sbjct: 142 DLYEYLLSKIASAGVNGQ--FRTPRHIIDLMVRMT----------APQPRDEVCDPACGT 189

Query: 217 GGFLTDAMNHVADCGS------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           GGFL  A  +V +  +            HH +      HG + +     +    ML+  +
Sbjct: 190 GGFLVAASEYVRETHADALLDANQRQHFHHSM-----FHGYDFDSTMLRIGSMNMLMHGV 244

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           ES P      ++ +G+    + +T       L+NPPF         +++ E    +L R 
Sbjct: 245 ES-PDIRYRDSLSEGAAGDTEKYT-----LILANPPFAG-------SLDYEATAKDLQRV 291

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                 +       L        L P  GGRAA+V+    LF   +     E+RR ++E 
Sbjct: 292 ------VKTKKTELLFLALFLKLLKP--GGRAAVVVPDGVLFG--SSKAHKELRRIMVEE 341

Query: 385 DLIEAIVALPTDLF 398
             ++A+V LP+ +F
Sbjct: 342 QKLDAVVKLPSGVF 355


>gi|154150574|ref|YP_001404192.1| N-6 DNA methylase [Candidatus Methanoregula boonei 6A8]
 gi|153999126|gb|ABS55549.1| N-6 DNA methylase [Methanoregula boonei 6A8]
          Length = 477

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 48/255 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V +  +E L+ +  SE  +GA  + TPR ++  +    + PD     +       + DP 
Sbjct: 116 VKAEAFEGLLEKAASEGKKGAGQYFTPRILIQ-SIVRCMKPDPRKKADF-----AICDPA 169

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  +   + +      +   +          GQEL      + +  + +  +E 
Sbjct: 170 CGTGGFLVCSYEWLLEQTKGGALDRDVAKRVLKDTYFGQELVARPRRLALMNLFLHNVEP 229

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK---DKDAVEKEHKNGELGR 323
                    I+ G ++ ++    +RF   L+NPPFG K      D+D       N +L  
Sbjct: 230 --------VIKYGDSIYENP-DNRRFDVVLTNPPFGTKGANQAPDRDDFVVSTSNKQLN- 279

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                         F+ H+   L+     GGRAA+V+  + LF  +AG    E+ + L E
Sbjct: 280 --------------FVQHVMTILK----PGGRAAVVVPDNVLFADQAG----EVFKVLTE 317

Query: 384 NDLIEAIVALPTDLF 398
           +  +  I+ LP   F
Sbjct: 318 DCNLHTILRLPNGTF 332


>gi|229523506|ref|ZP_04412911.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae bv. albensis VL426]
 gi|229337087|gb|EEO02104.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae bv. albensis VL426]
          Length = 512

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 64/272 (23%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           V  +IYE+L+ +  S    G   F TPR ++ +   +L + P D            + DP
Sbjct: 141 VKGDIYEYLLSKLSSAGINGQ--FRTPRHIIDMMVEMLDVQPTD-----------VICDP 187

Query: 213 TCGTGGFLTDAMNHVADCGSHHKI-------PPILVPH---------------GQELEPE 250
            CGT GFL+ +M ++    +  +         P+                   G + +  
Sbjct: 188 ACGTAGFLSRSMEYLMRIHTSAESIYQDEDDNPVYTGDLLHEYQDHINTKMFWGFDFDNT 247

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWE 306
              V    ML+  + +        NI    +L+K      +    F   L+NPPF     
Sbjct: 248 MLRVSAMNMLLHGVSA-------ANITYQDSLNKSFLGQPQEENFFDKILANPPF----- 295

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             K +++++  N ++      + K     +LF+  +   L+L    GGR+A ++    LF
Sbjct: 296 --KGSLDEQSVNPKV----LSMVKTKKTELLFVALILRMLKL----GGRSATIVPDGVLF 345

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              + S   ++R+ L++++ +EAI++LP+ +F
Sbjct: 346 G--SSSAHQDLRKTLIDHNQLEAIISLPSGVF 375


>gi|327183905|gb|AEA32352.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 522

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 104/261 (39%), Gaps = 53/261 (20%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTL 209
           PD V  ++YE+L+ +  +    G   F TPR ++ +   L+   PDD +           
Sbjct: 172 PD-VQGDLYEYLLSKLSTAGRNGQ--FRTPRHIIKMMVKLMNPTPDDKI----------- 217

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------------GQELEPETHAVCVA 257
            DP CGT GFL  A  ++ +     K   I                G +++     +   
Sbjct: 218 ADPACGTSGFLVAAAEYLKNNPETEK--EIFFNKEKRNYYKSDMFTGYDMDGTMLRIGAM 275

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M+   + ++P      NIQ   +LS        +   L+NPPF  K   D D V     
Sbjct: 276 NMMTHGI-TNP------NIQYRDSLSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLL 326

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     + K     +LFL      L++    GGR A ++    LF   +      I
Sbjct: 327 K---------VCKTKKTELLFLALFLRMLKV----GGRCACIVPDGVLFG--SSRAHKAI 371

Query: 378 RRWLLENDLIEAIVALPTDLF 398
           R+ L+E + +EA++++P+ +F
Sbjct: 372 RKQLVEENRLEAVISMPSGVF 392


>gi|293372411|ref|ZP_06618795.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CMC 3f]
 gi|292632594|gb|EFF51188.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CMC 3f]
          Length = 553

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 134/314 (42%), Gaps = 37/314 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ G
Sbjct: 185 SSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNADLHS------MECYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A++H        +         Q          +   L+  L++  + D   N
Sbjct: 239 TGTLLM-ALSHQI---GEDRCTIFSQDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVN 294

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---S 332
               S   + L   ++F + +SNPPF   +   ++ +          RF  G+P +    
Sbjct: 295 PYHKSDGGQQL---RQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGVPNVPAKK 346

Query: 333 DGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
             SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   ++++ ++
Sbjct: 347 KESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHKIVDDKIV 399

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIND 446
              V++P+++F  T     +       T +   KV LI+A+ L    ++  G K+  +ND
Sbjct: 400 YGCVSMPSNVFANTGTNVSVLFFDKSATTD---KVILIDASKLGEEYKDANGLKKVRLND 456

Query: 447 DQRRQILDIYVSRE 460
           ++  +I+  +  +E
Sbjct: 457 EEIEKIVGTFQRKE 470


>gi|299144864|ref|ZP_07037932.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23]
 gi|298515355|gb|EFI39236.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23]
          Length = 553

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 134/314 (42%), Gaps = 37/314 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ G
Sbjct: 185 SSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNADLHS------MECYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A++H        +         Q          +   L+  L++  + D   N
Sbjct: 239 TGTLLM-ALSHQI---GEDRCTIFSQDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVN 294

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---S 332
               S   + L   ++F + +SNPPF   +   ++ +          RF  G+P +    
Sbjct: 295 PYHKSDDGQQL---RQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGVPNVPAKK 346

Query: 333 DGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLI 387
             SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   ++++ ++
Sbjct: 347 KESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHKIVDDKIV 399

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIND 446
              V++P+++F  T     +       T +   KV LI+A+ L    ++  G K+  +ND
Sbjct: 400 YGCVSMPSNVFANTGTNVSVLFFDKSATTD---KVILIDASKLGEEYKDANGLKKVRLND 456

Query: 447 DQRRQILDIYVSRE 460
           ++  +I+  +  +E
Sbjct: 457 EEIEKIVGTFQRKE 470


>gi|312897853|ref|ZP_07757268.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359]
 gi|310621052|gb|EFQ04597.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359]
          Length = 432

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 27/180 (15%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349
           ++   +SNPP+   W+   D            RF G  L   S     F++   + LE  
Sbjct: 167 KYDTVISNPPYSMPWDPVMDE-----------RFEGYKLAPKSKADYAFVLDGIHSLE-- 213

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A  +L    LF G+A   E +IRR L++ +L++A+V LP  LF  T+I   + +
Sbjct: 214 --DNGTAVYILPHGVLFRGQA---EEDIRRELIDRNLLDAVVGLPGKLFANTDIPVCVLV 268

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
               K    R  +  I+A   +  ++N+ +    +  +   ++++ Y +R E  K+SR +
Sbjct: 269 F---KKNRDRKDILFIDAQKEFKKLKNKNQ----MTVEHVTRVINTYATRSEQDKYSRCV 321


>gi|88860311|ref|ZP_01134949.1| putative type I restriction-modification system, methyltransferase
           subunit [Pseudoalteromonas tunicata D2]
 gi|88817509|gb|EAR27326.1| putative type I restriction-modification system, methyltransferase
           subunit [Pseudoalteromonas tunicata D2]
          Length = 428

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 9/138 (6%)

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G++LS+  F GK+F   +  PP  +K+E +    E EH    +   G  +P  S G  ++
Sbjct: 192 GNSLSEFKFEGKKFDLVVMEPPLAQKFESNFRT-ELEHSPFIITEQGKSIPT-SAGDAIW 249

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    ++L    N  G+A +VL    LF G     ++ +R  LL ++L++ IVALP+ + 
Sbjct: 250 MQFALHQL----NETGKAYLVLPQGCLFRG---GYDAAVREHLLNHELVDYIVALPSGVL 302

Query: 399 FRTNIATYLWILSNRKTE 416
             T I   L +L   K +
Sbjct: 303 NGTGIEPVLLVLDKAKVK 320


>gi|160914349|ref|ZP_02076568.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991]
 gi|158433822|gb|EDP12111.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991]
          Length = 435

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 51/273 (18%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  S G  +F TPR V      ++           P +  T+ D  CGTG
Sbjct: 92  IYESILKELQSAGSSG--EFYTPRAVTDFMAKMI----------EPKIGETMADFACGTG 139

Query: 218 GFLTDAM----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GFLT  +    N +       K    +  +G E +   + +C+  ML+  ++  PR    
Sbjct: 140 GFLTSWIKELENKIQTNEDRRKFDSSI--YGIEKKQFPYMLCITNMLLHGIDI-PR---- 192

Query: 274 KNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+  ++L  D+       +F   L NPP+G   + D     K H   +L         
Sbjct: 193 --IEHDNSLLYDVLDYTDDDKFDVILMNPPYGGNEKSDV----KNHFPSDLAS------- 239

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GR A++L    LF     + +  I++ LL    +  I
Sbjct: 240 -SETADLFMSVIMYRLK----ENGRVAVILPDGFLFG--TDNAKVSIKKKLLNEFNLHTI 292

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V +P  +F     + Y  I +N    ++ GK +
Sbjct: 293 VRMPHSVF-----SPYTSITTNILFFDKTGKTK 320


>gi|187927116|ref|YP_001897603.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|309780179|ref|ZP_07674930.1| type I restriction-modification system methylation subunit
           [Ralstonia sp. 5_7_47FAA]
 gi|187724006|gb|ACD25171.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|308920882|gb|EFP66528.1| type I restriction-modification system methylation subunit
           [Ralstonia sp. 5_7_47FAA]
          Length = 710

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 123/309 (39%), Gaps = 79/309 (25%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDF---MTPRDVVHLAT-ALLLDPDDALFKESPGMIRTL 209
           V+   YE  +R +G+    GA++    +TPR +   A  A+ + P D +F          
Sbjct: 295 VLGKFYEVFLR-YGN----GAKEIGIVLTPRHITRFAVDAVGVSPSDLVF---------- 339

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRR- 263
            DP CGTGGFL  A +HV    +  K  P+         G E E    A+ +  M+ R  
Sbjct: 340 -DPACGTGGFLVAAFDHVR---AKTKGAPLERFKRFGLFGIEQESSVAALAIVNMIFRGD 395

Query: 264 -----LESDP-RRDLSKNIQQGSTLSKDLFTGKRF-----HYCLSNPPFGKKWEKDKDAV 312
                +E+D   R L+++   G   ++ +    +           NPPF       K + 
Sbjct: 396 GKNNIVEADCFNRFLTRSTNDGHATAQYVKAKPKLGEEPITRVFMNPPFAL-----KKSD 450

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           E E +  E       L  ++DG++L                   AIV  S     G AG+
Sbjct: 451 EHEWRFVET-----ALKSMADGALLL------------------AIVPMSVVSEGGSAGA 487

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
                RR LLE+  + A+V+LP +LF+   +     IL       R+G         LW 
Sbjct: 488 ----WRRPLLEHHSVVAVVSLPEELFYPVAVQAVAIIL-------RKGVPHRAEQPVLWA 536

Query: 433 SIRNEGKKR 441
            + N+G ++
Sbjct: 537 RVVNDGYRK 545


>gi|237807924|ref|YP_002892364.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
 gi|237500185|gb|ACQ92778.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
          Length = 513

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 114/273 (41%), Gaps = 66/273 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           V  +IYE+L+ +  S    G   F TPR ++ +   ++ + P +           T+ DP
Sbjct: 141 VKGDIYEYLLSKLSSAGING--QFRTPRHIIDMMIEMIDVQPTE-----------TVCDP 187

Query: 213 TCGTGGFLTDAMNHVA------------DCGSHHKIPPILVPHGQELEPETH-------- 252
            CGT GFL   M ++             + G+      +L P+ + +  E          
Sbjct: 188 ACGTAGFLARTMEYLTRKYSSPESIYKDEDGNPVYSGDLLAPYSEHINKEMFWGLDFDST 247

Query: 253 --AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKW 305
              V    M++  + +        +I    +L+K  F GK      F   L+NPPF  K 
Sbjct: 248 MLRVSAMNMMLHGVSN-------AHITYQDSLNKS-FVGKPQEENYFDKILANPPF--KG 297

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             D+ +V           +     K     +LF+  +   L+L    GGR+A ++    L
Sbjct: 298 SLDETSVNP---------YVLKKVKTKKTELLFVALILRMLKL----GGRSATIVPDGVL 344

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           F   + S   ++R+ L+EN+ +EA+++LP+ +F
Sbjct: 345 FG--SSSAHKDLRKELIENNQLEAMISLPSGVF 375


>gi|90962730|ref|YP_536645.1| modification subunit [Lactobacillus salivarius UCC118]
 gi|90821924|gb|ABE00562.1| Modification subunit [Lactobacillus salivarius UCC118]
          Length = 465

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 132/311 (42%), Gaps = 64/311 (20%)

Query: 171 SEGAEDFM--TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           S GA+D    T +++  L T L+    + +         ++YDP  GT   L   +N  A
Sbjct: 144 SSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTASLLL-GINQAA 193

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              + +        +GQ++  +     +  +++  ++ D         +  +TL+ +   
Sbjct: 194 LKENRY--------YGQDISTQAIKTAIMNVIVNDVDDDKFE-----FKNENTLANNWEF 240

Query: 289 GKRFHYCLSNPPFGKKWEKDKD-AVEKEHKN-GEL------GRFGPGLPKISDGSMLFLM 340
           GK     +S+PP   KW  D++ + ++ +++ GE+      G    G+ K+SD  M+   
Sbjct: 241 GK-VDIVVSDPPINMKWNVDRNLSQDRRYRDYGEMPNKADWGFILDGIDKLSDNGMM--- 296

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                            + +    LF G   + E  IRR LLE+  I A++ LP +    
Sbjct: 297 ----------------VVSVVQGTLFRG---AKEYNIRRKLLEDGKIRAVIQLPGNTKLS 337

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSR 459
           T IAT L +   RK+ E +  V  INA+  +     E     I+ +    +I+D +   +
Sbjct: 338 TTIATCLLVF--RKSSEDKD-VFFINASQEYEKKGLEN----ILTEANVDKIVDTFNEKK 390

Query: 460 ENGKFSRMLDY 470
           E  +FS M +Y
Sbjct: 391 EVQRFSHMANY 401


>gi|148654897|ref|YP_001275102.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148567007|gb|ABQ89152.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 725

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 104/244 (42%), Gaps = 66/244 (27%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR +V L TAL           +    + + D  CG+GG L             H  
Sbjct: 97  YPTPRHIVRLMTAL-----------AETTKKVVADFACGSGGLLI------------HSQ 133

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              LV  G ++ PE   +  A + +   + D        I++G+ L +   + +RF   +
Sbjct: 134 GSSLV--GVDISPEWARIARANLQLHEKQGD--------IREGNAL-RVAKSDERFERIV 182

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGG 354
            NPPFG+K   D               FG      S+ ++  L L HLA          G
Sbjct: 183 MNPPFGEKIASD---------------FG----TRSETALINLALNHLATN--------G 215

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413
           RAA++     LF+    S E ++R+ L+++  +EAI+ LP D F   + + T+L ++ N+
Sbjct: 216 RAALLAPGGVLFSN--SSAEEKLRQRLVDDVTLEAIITLPEDAFQPYSTLTTHLLLIENK 273

Query: 414 KTEE 417
           K  E
Sbjct: 274 KPVE 277


>gi|21221543|ref|NP_627322.1| hypothetical protein SCO3104 [Streptomyces coelicolor A3(2)]
 gi|10241787|emb|CAC09545.1| hypothetical protein SCE41.13c [Streptomyces coelicolor A3(2)]
          Length = 679

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 33/222 (14%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L  DP   L  E  G  RT+ DP CGTG  L  A    A      ++      +GQE +P
Sbjct: 186 LTPDPLADLMAELAGPARTVLDPACGTGSLLRAA---AATTRPGQEL------YGQESDP 236

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKD 308
              A+    + +         D +  I  G +L  D  TG R    L +PPF ++ W  D
Sbjct: 237 ALAALTALRLAL-------STDATVRIAAGDSLRADARTGLRADAALCHPPFNERNWGHD 289

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           + A +         R+  G P  ++  + ++ H   ++    +GG    +VL      + 
Sbjct: 290 ELAYDP--------RWEYGFPARTESELAWVQHALARVR---DGG--TVVVLMPPAAASR 336

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           R+G     +R  LL    + A++ALP       N+  +LW+L
Sbjct: 337 RSG---RRVRADLLRRGALHAVIALPVGAAPPYNLPLHLWVL 375


>gi|1771599|emb|CAA64185.1| hypothetical protein [Staphylococcus phage phi-42]
          Length = 639

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 117/289 (40%), Gaps = 56/289 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           ++ N Y   ++ +G          +TPR + +L   L+ ++ +D +            DP
Sbjct: 310 ILGNFYGEFVK-YGGNDGNSLGIVLTPRHITNLMCELIDINKNDYVL-----------DP 357

Query: 213 TCGTGGFLTDAMNHV------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            CG+GGFL  AMN +       +  +H K   +   HG EL+ +   +    M++R    
Sbjct: 358 CCGSGGFLIAAMNKMLHETEDEEKKTHIKQEQL---HGIELQQKLFTIATTNMILR---G 411

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D + +L ++      + K+L+  K     L NPP+ +   K+                  
Sbjct: 412 DGKSNLKRD--DIFHIEKELYANK-ITKALINPPYSQAKTKN------------------ 450

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L  +S+ S      +   L L   G   AAIV  S+ +      +     +R +LEN  
Sbjct: 451 -LSHLSEISF-----INETLSLMKIGAKLAAIVPQSTMI----GKTKNDNYKRDILENHS 500

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           ++ ++ L  D F+   +   + + +    ++ + +V  IN +D    +R
Sbjct: 501 LDTVITLNKDTFYGVGVNPCIAVFTAGIPQDEKKRVNFINFSDDGYIVR 549


>gi|254168930|ref|ZP_04875770.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|197622194|gb|EDY34769.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
          Length = 760

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 60/278 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   Y   +R   S+   G    +TP  +  L   L     D++          + D  
Sbjct: 285 ILGKFYVEFLRYANSDKKLGI--ILTPPHITELFCELAEITKDSI----------VLDNC 332

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ----ELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL  AM  + +  S +      +   Q    E +   +A+ +  M++        
Sbjct: 333 CGTGGFLISAMKKMIEKASSNSKKIKEIKEKQIVGIEYQDHIYALAITNMIVHG------ 386

Query: 270 RDLSKNIQQGS----TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D   NI  GS    T+ K++    + +  L NPP+          +EK+  N       
Sbjct: 387 -DGKTNIYHGSCFDETIKKEVKEKFKPNVGLLNPPY---------KIEKDDTNE------ 430

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLEN 384
                       F   L N   L P  GG+   +L   P+    A  GE  E ++ LL+N
Sbjct: 431 ------------FKFVLNNLSMLEP--GGKCVAIL---PMRCVLATDGEDYEFKKKLLKN 473

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             +EA++++P DLF+   + T + +++  K      KV
Sbjct: 474 HTLEAVMSMPDDLFYPVGVVTAVIVITAHKPHPDNKKV 511


>gi|229490946|ref|ZP_04384780.1| N-6 DNA methylase [Rhodococcus erythropolis SK121]
 gi|229322153|gb|EEN87940.1| N-6 DNA methylase [Rhodococcus erythropolis SK121]
          Length = 515

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 58/281 (20%)

Query: 131 GLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           GLL K+     G+ + + DT  D     +YE+++ +  S    G   F TPR ++ +   
Sbjct: 128 GLLMKVIDLLDGVPMENLDTKGD-----VYEYMLSKIASAGQNG--QFRTPRHIIQMMVE 180

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------------HHKIP 237
           ++           PG    + DP  GT GFL  A  H+    S            HH + 
Sbjct: 181 MM--------APQPG--DRIVDPASGTCGFLVAASEHMRAHHSEEISSGATREQYHHDM- 229

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG + +     +    M++  +E +P      ++ + +T     ++       L+
Sbjct: 230 ----FHGFDFDNTMLRIGSMNMMLHGIE-NPDVRYRDSLAEANTADAGAYS-----MILA 279

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF    + +  A + +            + K     +LF M L  +L  P   GGRAA
Sbjct: 280 NPPFAGSLDYENTAKDLQQ-----------IVKTKKTELLF-MALFLRLLKP---GGRAA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +++    LF   + +    +R+ L+E+  ++A+V LP+  F
Sbjct: 325 VIVPDGVLFG--SSTAHKTLRKMLVEDHKLDAVVKLPSGAF 363


>gi|148544649|ref|YP_001272019.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|184154002|ref|YP_001842343.1| type I restriction-modification system M subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227363771|ref|ZP_03847878.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|325682982|ref|ZP_08162498.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
 gi|148531683|gb|ABQ83682.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|183225346|dbj|BAG25863.1| type I restriction-modification system M subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071128|gb|EEI09444.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|324977332|gb|EGC14283.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
          Length = 517

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 44/253 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  ++YE+L+ +  +    G   F TPR ++ +   L+          +P +   + DP 
Sbjct: 171 VRGDVYEYLLGKLSTAGRNGQ--FRTPRHIIKMIVELM----------NPQVTDKICDPA 218

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH--------GQELEPETHAVCVAGMLIRRLE 265
            GT GFL ++   + D             H        G + +     +    ML   ++
Sbjct: 219 AGTAGFLVESAEFLQDKKKEEIFYNKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGVD 278

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +        N++   +LS+       +   ++NPPF  K   D ++V K+          
Sbjct: 279 N-------PNVEYQDSLSEQNTDRDEYSLIMANPPF--KGSLDYNSVSKDLLK------- 322

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LF+      L++    GGR A ++    LF   +      IR+ ++EN+
Sbjct: 323 --ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVLFG--SSKAHKSIRKEIIENN 374

Query: 386 LIEAIVALPTDLF 398
            +EA++++P+ +F
Sbjct: 375 NLEAVISMPSGVF 387


>gi|307250669|ref|ZP_07532606.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857277|gb|EFM89396.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 489

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 53/267 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE++++   S  + G  +F TPR V      ++          +P +   + D  CGT
Sbjct: 149 DIYENILKSLQSAGNAG--EFYTPRAVTDFMAQMI----------APKLGERIADFACGT 196

Query: 217 GGFLTDAM-------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           GGFLT A+         V+D    +        +G E +   H +C+  +L+  ++    
Sbjct: 197 GGFLTSALKVLEKQIQSVSDRTLFNN-----SVYGIEKKALPHLLCITNLLLHDID---- 247

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              + N+   + L    KD     +F   L NPP+G         +E+   N       P
Sbjct: 248 ---NPNVHHDNALEKPVKDYTDSDKFDVILMNPPYGGS------EIEQIKTN------FP 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + S+ + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    
Sbjct: 293 SALRSSETADLFMSVIMYRLK----KNGRVAIVLPDGFLFG--TDNAKVAIKQKLMTEMN 346

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSN 412
           +  ++ LP  +F   T+I T +    N
Sbjct: 347 LHTVIRLPHSVFAPYTSITTNILFFDN 373


>gi|172039949|ref|YP_001799663.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171851253|emb|CAQ04229.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 524

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 48/280 (17%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMS-NIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +E    L ++ +    +E       +R MS ++YE+++ +  S  + G   F T   ++ 
Sbjct: 117 IENPATLLRVMEQVDALEF-----TNRDMSGDLYEYMLSKLASSGTNG--QFRTTSHIID 169

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA----MNHVADCGSHHKIPPILV 241
           L   L+           P     + DP CGT GFL  A     +H AD     ++     
Sbjct: 170 LMVELM----------RPAPKHRVIDPACGTAGFLVGAREWTRHHHADEFMDRRVSDWYT 219

Query: 242 PH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G + +     +    M +   E DP      ++QQ     ++      F   L+N
Sbjct: 220 QRALTGFDFDSSMVRIAAMNMFMHGFE-DPNISYRDSLQQVPEADREA-----FDIILAN 273

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF      D+ +++ E  N         L       +LFL      L+     GGRAA+
Sbjct: 274 PPFAGSI--DESSLDPELAN---------LISSKRTELLFLARFLTLLK----PGGRAAV 318

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++    LF   +     EIR+ L++   ++A++ LP+  F
Sbjct: 319 IVPEGVLFG--STKAHREIRKHLIDEQRLDAVIKLPSGTF 356


>gi|159030700|emb|CAO88373.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 81

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           +FIW  A+ +   FK   +  VILPFT+LRR +C LEPT+  V   Y  +     +L+ 
Sbjct: 8  VSFIWSIADLIRDTFKRGKYQDVILPFTVLRRFDCVLEPTKEEVLAAYNHYKDKLDNLDP 67

Query: 72 FV-KVAGYSFYN 82
           + K +G++FYN
Sbjct: 68 LLCKKSGFAFYN 79


>gi|194396843|ref|YP_002037523.1| type I restriction-modification system subunit M [Streptococcus
           pneumoniae G54]
 gi|194356510|gb|ACF54958.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae G54]
          Length = 497

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 106/252 (42%), Gaps = 45/252 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+L+ +  +    G   F TPR ++ +   L+           P +   + DP  
Sbjct: 154 IGDIYEYLLSKLSTAGKNGQ--FRTPRHIIDMMVELM----------QPTIKDIISDPAM 201

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESD 267
           G+ GFL  A  ++       +     + H       G + +     +    M++  +E  
Sbjct: 202 GSAGFLVSASRYLKRKKDEWETNTDNINHFHNQMFRGNDTDTTMLRLGAMNMMLHGVE-- 259

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +  I    +LS+D     ++   L+NPPF       K +++    + +L      
Sbjct: 260 -----NPQISYLDSLSQDNEEADKYTLVLANPPF-------KGSLDYNSTSNDL----LA 303

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDL 386
             K     +LFL      L+     GGRAA+++    LF + +A  G   IR+ ++EN  
Sbjct: 304 TVKTKKTELLFLSLFLRTLK----PGGRAAVIVPDGVLFGSSKAHKG---IRQEIVENHK 356

Query: 387 IEAIVALPTDLF 398
           ++A++++P+ +F
Sbjct: 357 LDAVISMPSGVF 368


>gi|329119168|ref|ZP_08247858.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464727|gb|EGF11022.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 500

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 85/357 (23%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++   LL ++      I+   DT        IYE +++   S  + G  +F TPR V   
Sbjct: 120 MKNGTLLRQLINAVDQIDFD-DTKERHAFGEIYETILKSLQSAGNAG--EFYTPRAVTDF 176

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---- 242
              ++          +P +  T+ D   GTGGFL  A+N +         P +  P    
Sbjct: 177 MVQVI----------APKLGETVADFAAGTGGFLVSALNALE--------PQVKTPKDRE 218

Query: 243 ------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFH- 293
                 +G E +P  H + +  +++  ++S PR      I+ G+ L +++     +  H 
Sbjct: 219 TLNQSLYGIEKKPLPHLLGITNLILHDIDS-PR------IRHGNALEQNVRDVQPRDLHD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L NPP+G K    +  + K++   EL        + S+ + LF+     +L+     G
Sbjct: 272 IILMNPPYGGK----ELELIKQNFPAEL--------RSSETADLFIALALYRLK----AG 315

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-----FRTNIATY-- 406
           GRAAI++    LF     + ++ ++  LL +  +  IV LP  +F       TNI  +  
Sbjct: 316 GRAAIIIPDGFLFGN--DTAKTALKTRLLTDFDLHTIVRLPKSVFAPYTSITTNILFFNK 373

Query: 407 ----------LW-----ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
                     LW     I S+RK   +   +QL + +D  +   N    R+ I D+Q
Sbjct: 374 PAQGQRPSEKLWFYRVDIPSDRKAFSKTKPMQLEHFSDCLSWWHN----RKEIKDEQ 426


>gi|163796256|ref|ZP_02190217.1| N-6 DNA methylase [alpha proteobacterium BAL199]
 gi|159178398|gb|EDP62940.1| N-6 DNA methylase [alpha proteobacterium BAL199]
          Length = 807

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 95/252 (37%), Gaps = 65/252 (25%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPT 213
           +  +YE   R  G         + TPR +      LL +  DD +            DPT
Sbjct: 282 LGQLYETFFRYAGGNT---IGQYFTPRHIASFGADLLGVSIDDVVL-----------DPT 327

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI----LVPH---GQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  AM  VA     H+I       LV     G + EP T A+CVA M++     
Sbjct: 328 CGTGGFLIAAMERVA---REHQISRSEMVKLVSTRLIGFDDEPITAALCVANMIL----- 379

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             R D S ++ +G   +   +        L NPP+  K          E           
Sbjct: 380 --RGDGSSSVHRGDAFTAPEYPIGTASVVLMNPPYPHKQTDTPTEAFVER---------- 427

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L  +S GS                   R A V+  S L      S ++  R+ +L+N+ 
Sbjct: 428 ALEGLSQGS-------------------RLAAVIPLSLLVK----SNKASWRKAILKNNT 464

Query: 387 IEAIVALPTDLF 398
           +EA + LP +LF
Sbjct: 465 LEAAIKLPDELF 476


>gi|326778616|ref|ZP_08237881.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658949|gb|EGE43795.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 867

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 52/277 (18%)

Query: 132 LLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           LL K+ +    I +   DT  D     IYE+L+ +  +    G   F TPR ++ L   +
Sbjct: 122 LLAKVVELLDSIAMESSDTAGD-----IYEYLLAKIATSGRNG--QFRTPRHLIRLMVEM 174

Query: 191 LL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------DCGSHHKIPPILV 241
               PDD            + DP CGT GFL  + ++V         D          + 
Sbjct: 175 TQPKPDD-----------EVCDPACGTAGFLVQSASYVKREHAKALLDVEQQAHFNASMF 223

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HG + +     +    ML+  +E+   R       + S +       +R+   L+NPPF
Sbjct: 224 -HGFDFDSTMLRIGSMNMLLHGIENPDIR------YRDSLVESSAGEAERYSLILANPPF 276

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
               + +  A +              LP +       L        L P  GGRAA+++ 
Sbjct: 277 AGSLDYESTAADL-------------LPVVKTKKTELLFLALFLRLLKP--GGRAAVIVP 321

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              LF   +     E+RR L+E+  ++ +V LP+ +F
Sbjct: 322 DGVLFG--STKAHKELRRTLVEDHKLDGVVKLPSGVF 356


>gi|134046196|ref|YP_001097681.1| N-6 DNA methylase [Methanococcus maripaludis C5]
 gi|132663821|gb|ABO35467.1| N-6 DNA methylase [Methanococcus maripaludis C5]
          Length = 499

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 71/290 (24%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           KI +N    E + D   D     +YE+L+    +    G   F TPR ++ +   L  DP
Sbjct: 126 KIVENLHIKEQNRDAKGD-----LYEYLLSELKTAGKNGQ--FRTPRHIIKMMVELT-DP 177

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------- 239
           D             + DP CGT GFL  A  ++    S  +   I               
Sbjct: 178 DVG---------DKICDPACGTAGFLIAAYEYLLKKHSSAEFIKIDEDGNEYGYKGDKLD 228

Query: 240 ---------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-QQGSTLSKDLFTG 289
                       +G E +     + +  +++  +E+        NI Q+ S +  D + G
Sbjct: 229 SKGHDFLRNETFYGSEFDQTMVRIALMNLMMHGIEN-------PNIFQKNSLVECDKYKG 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             ++  L+NPPF  K   DK  +E           G      +   +LFL  + N L + 
Sbjct: 282 -HYNVILANPPF--KGSVDKSEIE-----------GNFTTTTTKTELLFLELMYNLLTI- 326

Query: 350 PNGGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              GGR A+++    LF N +A     +IR  +L+N  ++A++++P+ +F
Sbjct: 327 ---GGRCAVIIPDGVLFGNSKA---HKQIRERILKNCRLDAVISMPSGVF 370


>gi|223933198|ref|ZP_03625189.1| N-6 DNA methylase [Streptococcus suis 89/1591]
 gi|223898128|gb|EEF64498.1| N-6 DNA methylase [Streptococcus suis 89/1591]
          Length = 419

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 44/274 (16%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           ++L D   GTG      +N+       H  P +     +E   +     +  + IR++++
Sbjct: 84  KSLADICAGTGSLTIQYLNY-------H--PDVEFVRCEEFSAKVIPFLLINLAIRKIDA 134

Query: 267 DPRRDLS--------KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +     S         +IQ G     D  + ++    +SNPP+   W    D        
Sbjct: 135 EVIHGDSLTRECFNVYSIQDGVISQIDSPSDRKVEVVISNPPYSMAWTPISDE------- 187

Query: 319 GELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
               RF   GL   +     FL+H  ++LE     GG  +++L    LF  RA S E  I
Sbjct: 188 ----RFDLFGLAPKTKADFAFLLHGFHQLE----DGGSMSLILPHGVLF--RANS-EGAI 236

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLE+  I+ I+ L  +LF  T I   + +L   ++++    V  ++A D +T    +
Sbjct: 237 RQQLLEHGAIDTIIGLAPNLFLNTGIPVAILLLRKGRSQK---DVFFVDAKDEFT----K 289

Query: 438 GKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDY 470
           GK +  ++ +  ++I  +   R    +FS + D+
Sbjct: 290 GKAQNSLDVEHIKKITSVVSLRMTTERFSYIADW 323


>gi|330902769|gb|EGH33773.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 200

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 27/196 (13%)

Query: 94  TNTRNNLESYIASFSDNAKA---IFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPD- 148
           TN  N L   +    +N  +   + E  DF+  + + +   L L ++  +F  + L    
Sbjct: 24  TNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQSKIPDLKLRQLISHFGQVRLRNSD 83

Query: 149 -TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
              PD ++   YE+LI  F     +   +F TPR VV L   LL           P +  
Sbjct: 84  FEFPD-LLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRLMVRLL----------RPELKH 132

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+GG L  A   + + G   +   +    GQE      ++    ML+  +   
Sbjct: 133 DIYDPCCGSGGMLIAAKEFIDEHGEDGRKANLF---GQEFNGTVWSIAKMNMLLHGIS-- 187

Query: 268 PRRDLSKNIQQGSTLS 283
                + ++Q   TLS
Sbjct: 188 -----TADLQNDDTLS 198


>gi|254415486|ref|ZP_05029246.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177667|gb|EDX72671.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 670

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 43/237 (18%)

Query: 177 FMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           + TPR +V     L  L+P++           ++ D  CG+GGFL D    + +  S   
Sbjct: 117 YPTPRHIVKFMQRLAQLEPNN----------HSVADLACGSGGFLLD--REITNPSSSE- 163

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                V  G ++ PE   +  A     RL     R ++ N  Q      + FT K F   
Sbjct: 164 -----VTIGIDISPEWKRLAWANT---RLHHFTPRLINGNALQ--VCGSEEFTKKTFDRI 213

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L NPPFG+K       ++++     LG       K+S  S   L  LA +   P    G+
Sbjct: 214 LINPPFGEK-------IDEKLAENTLGY------KVSSRSETALTALALQKLAP---AGK 257

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILS 411
           AAI++ S  LF+    + E ++RR L+ +  +EA+++LP D L   + + T+L ++S
Sbjct: 258 AAILVPSGLLFSN--NTSERKLRRQLIFDYKLEAVISLPKDALQPYSPLQTHLLLVS 312


>gi|328542330|ref|YP_004302439.1| Type I restriction modification system M subunit (Site-specific
           DNA-methyltransferase subunit) [polymorphum gilvum
           SL003B-26A1]
 gi|326412077|gb|ADZ69140.1| Type I restriction modification system M subunit (Site-specific
           DNA-methyltransferase subunit) [Polymorphum gilvum
           SL003B-26A1]
          Length = 512

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 50/277 (18%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            LL K+ +    I +      DR    ++YE+++ +  S    G   F TPR ++ L   
Sbjct: 128 ALLAKVVEKLDRIPME-----DRDTKGDVYEYMLAKIASAGQNG--QFRTPRHIIRLMVE 180

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------VP 242
           +           +P     + DP  GT GFL  A  ++ +        P L       + 
Sbjct: 181 M----------TAPKPTDAICDPAAGTCGFLVAAGEYLREKHPELMRDPALRKHFHEGLF 230

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPF 301
           HG + +     +    M +  +E+        N+    +L++D       +   L+NPPF
Sbjct: 231 HGFDFDTTMLRIGAMNMTLHGVEN-------PNVTYRDSLAEDHAEDAGAYSLVLANPPF 283

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                 D +A  K+ +          + K     +LF+      L+     GGRAA+++ 
Sbjct: 284 AGSL--DYEATAKDLQK---------IVKTRKTELLFIALFLRLLKT----GGRAAVIVP 328

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              LF G +G+   +IRR L+E+  ++A++ LP+ +F
Sbjct: 329 DGVLF-GSSGA-HKDIRRMLVEDHKLDAVIKLPSGVF 363


>gi|148983890|ref|ZP_01817209.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924037|gb|EDK75149.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799576|emb|CBW32129.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae OXC141]
          Length = 496

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 119/280 (42%), Gaps = 58/280 (20%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L           P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------DPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR---- 269
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPKIVHG 254

Query: 270 RDLSKNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             L KN+  G+TL K++  +T  ++F   + NPPFG                 EL     
Sbjct: 255 NTLEKNV-HGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKN 298

Query: 327 GLP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLL 382
             P   + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L+
Sbjct: 299 NFPAELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLV 350

Query: 383 ENDLIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +   +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 351 DEFNLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 387


>gi|218675223|ref|ZP_03524892.1| putative type I restriction enzyme modification methylase subunit
           [Rhizobium etli GR56]
          Length = 364

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 97/238 (40%), Gaps = 50/238 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++   E   GA  + TPR ++ L   L+        +  PG I  + DP  G
Sbjct: 155 GDLYEGLLQKNAEETKRGAGQYFTPRVLIELLVRLM--------QPQPGEI--IQDPAAG 204

Query: 216 TGGFLTDA-------MNHVADCG-SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TGGFL  A        ++  D G    +       HG E  P T  + +  + +  ++SD
Sbjct: 205 TGGFLIAADRYMRARTDNYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD 264

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRF 324
                  ++  G TLS       R +  L+NPPFG       +D  +V            
Sbjct: 265 -------HVDLGDTLSDKGKGLGRVNLILTNPPFGPAGGAPTRDDLSVTA---------- 307

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                 +S   + F+ H    L+     GGRAAIV+  + LF    G    E+RR ++
Sbjct: 308 -----SVSSYQLPFVEHCIRALQ----PGGRAAIVVPDNVLFEDARG---KELRRMMM 353


>gi|320087560|emb|CBY97324.1| type I site-specific deoxyribonuclease [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 130

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 11/114 (9%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G  AIVL    LF G A   E  IRR  LE+  I+ ++ LP +LFF T I   + +L   
Sbjct: 15  GTMAIVLPHGVLFRGGA---EERIRRKRLEDGNIDTVIGLPANLFFSTGIPVCILVLKKC 71

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
           K  +    V  INA++ +     +GK++  +N +   +I+D Y  R E  ++SR
Sbjct: 72  KKPD---DVLFINASEYF----EKGKRQNRLNKEHISKIVDTYQFRKEEDRYSR 118


>gi|296448296|ref|ZP_06890189.1| N-6 DNA methylase [Methylosinus trichosporium OB3b]
 gi|296254211|gb|EFH01345.1| N-6 DNA methylase [Methylosinus trichosporium OB3b]
          Length = 512

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 52/283 (18%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++  A LL K+    S IE+      DR    ++YE+++ +  S    G   F TPR ++
Sbjct: 123 QIPSAQLLAKVVDKLSQIEMG-----DRDTKGDVYEYMLVKIASAGQNG--QFRTPRHII 175

Query: 185 HLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
            L   L+   P+DA+            DP  GT GFL  A  ++    S       L  H
Sbjct: 176 ALMVELMQPRPEDAI-----------CDPAAGTCGFLVAAGEYLRKHHSGLFRDAKLRAH 224

Query: 244 -------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYC 295
                  G + +P    +    M +  +E+        N+    +L++D      R+   
Sbjct: 225 FHERLFNGFDFDPTMLRIGAMNMALHGVEN-------ANVAYRDSLAEDHSEDAGRYSLV 277

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF    + +  A +                K ++   L L     K       GGR
Sbjct: 278 LANPPFAGSLDYETTAADLRQIVKT---------KKTELLFLALFLRLLKT------GGR 322

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           AA+++    LF   +     ++RR L+E + +EA+V LP+ +F
Sbjct: 323 AAVIVPDGVLFG--SSKAHKDLRRLLVEENKLEAVVKLPSGVF 363


>gi|57506133|ref|ZP_00372055.1| type I restriction-modification system M subunit [Campylobacter
           upsaliensis RM3195]
 gi|57015617|gb|EAL52409.1| type I restriction-modification system M subunit [Campylobacter
           upsaliensis RM3195]
          Length = 495

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 48/254 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE  ++   S  + G  +F TPR +      +L          SP +  ++ D  C
Sbjct: 146 LCKVYESFLKTLQSAGNAG--EFYTPRAITEFMVEML----------SPKLGESVADLAC 193

Query: 215 GTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFL  A + +       S  K+      +G E +     +C   +LI  +E      
Sbjct: 194 GTGGFLISAAHFLEKQVSLTSERKVFETSF-YGVEKKSLPFLLCATNLLINGIE------ 246

Query: 272 LSKNIQQGSTLS-------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            + N++ G+           DL    +F   L NPP+G              +  ++  F
Sbjct: 247 -NPNLKHGNAFDFSKFEDFDDLTKYPQFDIILMNPPYGGN-----------ERGNDIKNF 294

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P   K S+ + LF+  + ++L       GR+A+VL    LF   A + +  ++R LL +
Sbjct: 295 -PQEYKSSETADLFMALILHRLSYK----GRSAVVLPDGFLFG--ADNAKINLKRKLLSD 347

Query: 385 DLIEAIVALPTDLF 398
             +  I+ LP  +F
Sbjct: 348 FNLYLILRLPKSVF 361


>gi|162453796|ref|YP_001616163.1| type I restriction-modification system M subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161164378|emb|CAN95683.1| probable type I restriction-modification system,M subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 486

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 50/231 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           + +  YE L+ +  +E  +GA  + TPR ++  +    + PD    +  PG    L DP 
Sbjct: 129 IQAAAYEGLLEKAAAEGKKGAGQYFTPRALIQ-SIVRCIRPDP---QGKPGF--ALCDPA 182

Query: 214 CGTGGFLTDAMNHVA-------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL  A   +        D  +  +I       GQEL      + +  + +  +E 
Sbjct: 183 CGTGGFLVAAWEWIEAEARGALDREAARRIKAGAF-FGQELVARPRRLALMNLYLHGIE- 240

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW-----EKDKDAVEKEHKNGEL 321
            PR  L  ++        D    +RF   L+NPPFG K       ++  A+   +K    
Sbjct: 241 -PRITLGDSL--------DAPPDERFDVILTNPPFGTKGAYETPRREDFAIATANKQ--- 288

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                         + F+ H+   L      GGRAA+VL    LF  +AG+
Sbjct: 289 --------------LNFIQHVLTIL----RPGGRAAMVLPDHCLFADQAGA 321


>gi|223938811|ref|ZP_03630699.1| N-6 DNA methylase [bacterium Ellin514]
 gi|223892509|gb|EEF58982.1| N-6 DNA methylase [bacterium Ellin514]
          Length = 811

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 50/275 (18%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++    +++           P    T+ DP C
Sbjct: 135 LGDAFEYLLSVLGSQGDAG--QFRTPRHIIDFIVSVV----------DPKKNETVLDPAC 182

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRL 264
           GT GFL  +  H+    +  +    L P           G ++ P+   + +  + +   
Sbjct: 183 GTAGFLISSYKHILRANTDARGNSKLTPDDRGRLAKNFKGYDISPDMVRLSLVNLYLHGF 242

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +DP      +I +  TL+ +    +     L+NPPF       K  + K HK     RF
Sbjct: 243 -TDP------HIYEYDTLTSEERWNEFADVILANPPF----MSPKGGI-KPHK-----RF 285

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              +P  +   +LF+ ++   L       GRA I++    +F  ++G+    +R  LL+ 
Sbjct: 286 --SVPS-NRSEVLFVDYMLEHL----TAHGRAGIIVPEGIIF--QSGTAYRRLREVLLKE 336

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
            LI  I++LP+ +F   + + T + IL  R  + R
Sbjct: 337 SLI-GIISLPSGVFQPYSGVKTSILILDKRVAKSR 370


>gi|313123146|ref|YP_004033405.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279709|gb|ADQ60428.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 491

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 118/288 (40%), Gaps = 53/288 (18%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K G+L +   N    +   D     + ++IYE ++++  S  + G  +F TPR +     
Sbjct: 123 KNGVLLRQVVNVIDEQDFTDPEDRHMFNDIYEGILKQLQSAGNSG--EFYTPRALTDFIA 180

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILVPHG 244
             L           P +   + D  CGTGGFLT  +N     +       K    +   G
Sbjct: 181 ETL----------KPKLGEKMADLACGTGGFLTSTLNLLKPQIKTVEDQKKYNEAVF--G 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGK-RFHYCLSNPPF 301
            E + + + + V  +L+  ++       + +I  G++L K++  +T K +F   + NPPF
Sbjct: 229 IEKKGQPYILAVTNLLLHDVD-------NPDIIHGNSLEKNITEYTEKEKFDIIMMNPPF 281

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGRAAI 358
           G                 EL       P   + S+ + LF+  +  +L+      GR  +
Sbjct: 282 G---------------GAELDTIKKNFPTDLQSSETADLFMDLIMYRLK----DNGRVGV 322

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
           +L    +F+      +  I++ L  +  +  I+ LPT +F   T +AT
Sbjct: 323 ILPEGFMFS--TDGAKRNIKQKLFNDFNVHTIIRLPTTIFSPYTTVAT 368


>gi|124005662|ref|ZP_01690501.1| type I restriction-modification system, M subunit, putative
           [Microscilla marina ATCC 23134]
 gi|123988730|gb|EAY28336.1| type I restriction-modification system, M subunit, putative
           [Microscilla marina ATCC 23134]
          Length = 1014

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 109/278 (39%), Gaps = 58/278 (20%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAED-FMTPRDVVHLATALLL---DPDDALFKESP 203
           D +P  ++SNIYE  + +   E S+  +  F TP  +       +L     DD  ++   
Sbjct: 291 DVIPVLLLSNIYEDFLEKEEGEASKTKKGAFYTPPALAEFILNEVLPYPTKDDTNYQ--- 347

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQELEPETHAV 254
             ++TL DPTCG+G FL + +N + D           S   I  I+  +   +E E  A+
Sbjct: 348 --VKTL-DPTCGSGIFLVETLNRLLDRWQVAHPNQSLSFEVICQIVQDNIFGIEIEKEAI 404

Query: 255 CVAGM-----LIRRLES--------------DPRRDLSK---NIQQGSTLSKDLFTGKRF 292
            VA       ++ RLE               DP  D  K   N+ + S+LS   F    F
Sbjct: 405 KVAAFSLYLAMLDRLEPKTLWQTARFPYLIYDPDNDADKQGANLFRMSSLSTGAFENIDF 464

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPPF               + G        L K    S + L  L     L P+ 
Sbjct: 465 DLVVGNPPFS--------------RGGLSNEIKTYLKKYDFASEMVLAFLHRATTLCPH- 509

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            G+ A+V ++ P+        ++  R++L +   +E +
Sbjct: 510 -GKIALVCAAKPILFNHLKPYQN-FRQFLFQETYVEKV 545


>gi|256026503|ref|ZP_05440337.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Fusobacterium sp. D11]
          Length = 296

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 89/213 (41%), Gaps = 29/213 (13%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VM 155
           RN    +I +  D+ +++F  +   + I ++    +L         I  +P  V D+   
Sbjct: 93  RNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTK 151

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  +    G   F TP+ ++++   L+           P +   + DP CG
Sbjct: 152 GDLYEYLLSKLSTSGKNGQ--FRTPKHIINMMVELM----------KPTVEDKIIDPACG 199

Query: 216 TGGFLTDAMNHV--------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL  ++ ++        A     +K     + HG + +     +    +L+  +++ 
Sbjct: 200 TSGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMKT- 258

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           P+      +++  +LS D      +   L+NPP
Sbjct: 259 PK------LKRIDSLSTDYSEENDYSLVLANPP 285


>gi|254481842|ref|ZP_05095085.1| N-6 DNA Methylase family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037971|gb|EEB78635.1| N-6 DNA Methylase family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 521

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 109/274 (39%), Gaps = 64/274 (23%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++     ++           P     + DP CGT
Sbjct: 143 DLYEYLLSKLTTAGINGQ--FRTPRHIIRAMVDMM----------DPKATDRICDPACGT 190

Query: 217 GGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL-- 272
            GFL+     + +  S     I  ++V    E   E   V   G L+        RD+  
Sbjct: 191 AGFLSTTYEFMLEKYSSKDGTIREMVVDENGE---EQEQVIYTGDLLADHREHVDRDMFH 247

Query: 273 ----------------------SKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKK 304
                                   +I    TLS+           + F   L+NPPF   
Sbjct: 248 GFDFDATMLRIAAMNLVMHGVTEPDIHYQDTLSQGFIERFPQSAREGFDLVLANPPF--- 304

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K ++++E  + E+ R      K     +LF+  +   L++    GGRAA+++    
Sbjct: 305 ----KGSLDEEDVDPEILR----TVKTKKTELLFIALILRMLKV----GGRAAVIVPDGV 352

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           LF   +     ++R+ ++E++ +EAIV+LP+ +F
Sbjct: 353 LFG--SSKAHQQLRKSMIEDNQLEAIVSLPSGVF 384


>gi|313903009|ref|ZP_07836404.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965]
 gi|313466733|gb|EFR62252.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965]
          Length = 906

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 38/251 (15%)

Query: 209 LYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILVP------HGQELEPETHAVCVA 257
           + DPT G+GGFL + +  V      D      +  + +       +G E+ P    +C  
Sbjct: 348 VIDPTAGSGGFLLEVLLQVWHKIDKDFAGRSDLERLKIDFALHKVYGIEIHPVLARICKI 407

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKW-EKD 308
            +L+         D   NI+   +    +F        T  RF   + NPPFG    E D
Sbjct: 408 NLLLHH-------DGHTNIEGDRSCLDSIFNLPRLNPPTAGRFTRVVGNPPFGDTVKEGD 460

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +D + +      L  F     +    S   ++  A +       GGR  +++    L N 
Sbjct: 461 EDLLGQ----NSLSNFHVAEGRTQVPSEHVILERAIQFLA---DGGRLGLIIPDGILNNP 513

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
              S   ++RR+L+ N +IEAIV+LP   F ++       IL  RK E    +V   NA 
Sbjct: 514 GDHSNCPQVRRFLVMNGVIEAIVSLPDYAFRKSGAQNKTSILFFRKFEPHE-RVAFKNAY 572

Query: 429 DLWTSIRNEGK 439
           D   + R  GK
Sbjct: 573 D---AAREAGK 580


>gi|291563845|emb|CBL42661.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SS3/4]
          Length = 676

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 117/299 (39%), Gaps = 78/299 (26%)

Query: 178 MTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           +TPR +  L   LL + P D +            DP CGT GFL  AM+H+ +     ++
Sbjct: 366 LTPRHICDLFCDLLNVQPSDIVL-----------DPCCGTAGFLVAAMHHMLEKAGTDQV 414

Query: 237 PPILVP----HGQELEPETHAVCVAGMLIR-------RLESDPRRDLSKNIQQGSTLSKD 285
               +     HG EL+    A+    M++R       + E   R++ ++   +G+T+   
Sbjct: 415 KRKNIKKKQLHGFELQSNMFAIAATNMILRDDGNSNIKCEDFLRQNPAQVQLKGATVG-- 472

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                     + NPP+ +  + D    E                      + F+ HL + 
Sbjct: 473 ----------MMNPPYSQGTKADPSQYE----------------------LSFVEHLLDS 500

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L      G RAA+++  S +  G+    E   +  +L++  +E ++   TD F+      
Sbjct: 501 L----TEGARAAVIVPQSSM-TGKT-KDEQTFKENILKHHTLEGVITCNTDTFYGVGTNP 554

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-----IIND---DQRRQILDIY 456
            + + +  +        + I+        RN+G + R     +  D   D+R+ +LD++
Sbjct: 555 VIAVFTAHEPHPDDKTCKFID-------FRNDGYEVRAHVGLVEGDSAKDKRQHLLDVW 606


>gi|262403985|ref|ZP_06080540.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC586]
 gi|262349017|gb|EEY98155.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC586]
          Length = 512

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 68/274 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           V  +IYE+L+ +  S    G   F TPR ++ +   ++ + P D            + DP
Sbjct: 141 VKGDIYEYLLSKLSSAGING--QFRTPRHIIDMMVEMIDVQPTD-----------VICDP 187

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL-------VPHGQEL-EPETHA----------- 253
            CGT GFL+ +M ++    +H     I        V  G  L E + H            
Sbjct: 188 ACGTAGFLSRSMEYL--TRTHTSAESIYQDEDGNPVYTGDLLHEYQDHINTKMFWGFDFD 245

Query: 254 -----VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKK 304
                V    ML+  + +        NI    +L+K      +    F   L+NPPF   
Sbjct: 246 NTMLRVSAMNMLLHGVSA-------ANITYQDSLNKSFLGQPQEENFFDKILANPPF--- 295

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K +++++  N ++      + K     +LF+  +   L+L    GGR+A ++    
Sbjct: 296 ----KGSLDEQSVNPKV----LSMVKTKKTELLFVALILRMLKL----GGRSATIVPDGV 343

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           LF   + S   ++R+ L++++ +EA+++LP+ +F
Sbjct: 344 LFG--SSSAHQDLRKTLIDHNQLEAMISLPSGVF 375


>gi|217975327|ref|YP_002360078.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500462|gb|ACK48655.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 540

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 112/278 (40%), Gaps = 67/278 (24%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +       G   F TPR+++ +   L+           P +  T+ DP  GT
Sbjct: 142 DLYEYLLSKLQQSGVNG--QFRTPRNIIQMMVELM----------QPKLGDTICDPASGT 189

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A+ +V +        P    H       G + +     +    ML+  +E +P 
Sbjct: 190 CGFLMAALEYVENRYKQEVNKPANRQHFNNAMFTGFDFDKSMLRIGAMNMLLHGIE-NPT 248

Query: 270 RDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPF-----------------GK-------- 303
                ++Q QG     D    + +   L+NPPF                 GK        
Sbjct: 249 VLYRDSLQDQG-----DANIREAYSLILANPPFKGSVDFDIIAPDLLRALGKNPTAKKVA 303

Query: 304 ---KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
              K E D D VE +    E+   GP         +LFL  +   L++    GGRAA+++
Sbjct: 304 PKYKTEIDADGVETQV---EVKAKGP----TEKSELLFLALILRMLKV----GGRAAVIV 352

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
               LF G   S +S IR  L+    +EA+++LP+ +F
Sbjct: 353 PDGVLF-GSTKSHKS-IREKLINEQKLEAVISLPSGVF 388


>gi|54024730|ref|YP_118972.1| putative restriction-modification system methyltransferase
           [Nocardia farcinica IFM 10152]
 gi|54016238|dbj|BAD57608.1| putative restriction-modification system methyltransferase
           [Nocardia farcinica IFM 10152]
          Length = 514

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 46/252 (18%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE+L+ +  S    G   F TPR ++ L   ++          +P    T+ DP  G
Sbjct: 149 GDIYEYLLAKIASAGQNG--QFRTPRHIIELMVHMM----------APKPGDTIVDPASG 196

Query: 216 TGGFLTDAMN----HVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           T GFL  A      H AD      G HH    +   HG + +     +    ML+  +E 
Sbjct: 197 TCGFLVAASEYMRAHHADAINSGAGRHHYHHKMF--HGFDFDNTMLRIGSMNMLLHGIEQ 254

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            P      ++ + +T   + ++       L+NPPF         +++ E+   +L +   
Sbjct: 255 -PDIRYRDSLAEANTGDAEAYS-----LVLANPPFAG-------SLDYENTAKDLQQIAK 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K ++   L L     K       GGRAA+++    LF   +     E+RR L+E   
Sbjct: 302 --TKKTELLFLALFLRLLK------PGGRAAVIVPDGVLFG--SSKAHKELRRILVEEQK 351

Query: 387 IEAIVALPTDLF 398
           ++A+V LP+ +F
Sbjct: 352 LDAVVKLPSGVF 363


>gi|166363241|ref|YP_001655514.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166085614|dbj|BAG00322.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 292

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 25/150 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE+ + +F +  +    +F TP  +V L  A +L+PD  L          ++DP 
Sbjct: 155 IFGRIYEYFLTQFANLKAHDNGEFFTPVSLVSL-IANVLEPDHGL----------VFDPA 203

Query: 214 CGTGGFLTDAMNHVADCGSHHKI-PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+GG    + + V       +I P +L   G E  P T  +    + +  LE D     
Sbjct: 204 CGSGGMFVQSAHFV----ERQRINPQMLTFKGLEKNPTTIRLAKMNLAVHGLEGD----- 254

Query: 273 SKNIQQGSTLSKD-LFTGKRFHYCLSNPPF 301
              IQ+  T  +D L    +  Y ++NPPF
Sbjct: 255 ---IQKAITYYEDPLALAGKVDYVMANPPF 281


>gi|282933444|ref|ZP_06338821.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281302427|gb|EFA94652.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 173

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 13/123 (10%)

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AIVALP  +
Sbjct: 4   WIEHIISKL----NPDGKAGFVLANGAL--STTLKEELAIRKNLLEADKIDAIVALPDKM 57

Query: 398 FFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           F+ T I   LW +   K  E    RRG+   I+A +L   +    +  R  +++  ++I 
Sbjct: 58  FYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSNEDIKKIA 114

Query: 454 DIY 456
           D Y
Sbjct: 115 DTY 117


>gi|182683454|ref|YP_001835201.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CGSP14]
 gi|182628788|gb|ACB89736.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CGSP14]
          Length = 487

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L          +P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------NPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|332202402|gb|EGJ16471.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 487

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L           P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------DPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTNDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|225860525|ref|YP_002742034.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229258|ref|ZP_06962939.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255150|ref|ZP_06978736.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502306|ref|YP_003724246.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727295|gb|ACO23146.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237901|gb|ADI69032.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390256|gb|EGE88597.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
          Length = 487

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L          +P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------NPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|322510790|gb|ADX06104.1| putative type I restriction modification N-6 adenine specific
           methyltransferase domain protein [Organic Lake
           phycodnavirus 1]
          Length = 184

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 89/180 (49%), Gaps = 27/180 (15%)

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G+ELEP+T+ + V+ MLI       + D   +I+   T        ++F   L+NPPFG
Sbjct: 22  YGKELEPDTYQLAVSNMLISTGHMFEKLDRGDSIRVPIT--------RKFDNILANPPFG 73

Query: 303 ---KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAI 358
               K+++ +  +++E+           +P  +D ++ LF+  +   L++     G+ A+
Sbjct: 74  INGLKYDEFESPLKREY-----------VPIKTDNAVSLFIQAIIYMLKI----NGKCAV 118

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL        ++ +    IR +LL+   ++ I+ LP+ +F  T+I T ++    ++  +R
Sbjct: 119 VLPDGQDLFSKSNNRLVAIREYLLKTCDLKEIIYLPSGIFTYTSIKTCVFYFVKKERRKR 178


>gi|227892723|ref|ZP_04010528.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227865500|gb|EEJ72921.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 516

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 103/260 (39%), Gaps = 56/260 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           V  ++YE+L+ +  +    G   F TPR ++ +   L+   PDD +            DP
Sbjct: 168 VQGDLYEYLLSKLSTAGRNGQ--FRTPRHIIKMMVELMNPTPDDKI-----------ADP 214

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH------------GQELEPETHAVCVAGML 260
            CGT GFL  A  ++ +     K   I                G +++     +    M+
Sbjct: 215 ACGTSGFLVTAAEYLKN--DREKEKAIFYSKEKKAYYKSSMFTGYDMDRTMLRIGAMNMM 272

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD--KDAVEKEHKN 318
              + +DP      NIQ   +LS        +   L+NPPF    + D   D++ K  K 
Sbjct: 273 THGI-TDP------NIQYKDSLSDQNIDADEYSLVLANPPFKGSLDYDTVSDSLLKVCKT 325

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K ++   L L     K+      GGR A ++    LF   +      IR
Sbjct: 326 -----------KKTELLFLTLFLRMLKI------GGRCACIVPDGVLFG--SSRAHKTIR 366

Query: 379 RWLLENDLIEAIVALPTDLF 398
           + L+E + +EA++++P+ +F
Sbjct: 367 KQLVEGNRLEAVISMPSGVF 386


>gi|148990031|ref|ZP_01821285.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924557|gb|EDK75644.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP6-BS73]
          Length = 467

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 59/277 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            ++IYE +++   +  + G  +F TPR        +L           P +  ++ D  C
Sbjct: 147 FNDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------DPKLGESMADLAC 194

Query: 215 GTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+   
Sbjct: 195 GTGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK--- 250

Query: 273 SKNIQQGSTLSKDL--FTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              I  G+TL K++  +T  ++F   + NPPFG                 EL       P
Sbjct: 251 ---IVHGNTLEKNVREYTNDEKFDIIMMNPPFG---------------GSELETIKNNFP 292

Query: 330 ---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLEND 385
              + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++  
Sbjct: 293 AELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEF 344

Query: 386 LIEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
            +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 345 NLHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|148998187|ref|ZP_01825656.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|168482752|ref|ZP_02707704.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168490596|ref|ZP_02714739.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492671|ref|ZP_02716814.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC3059-06]
 gi|168576583|ref|ZP_02722457.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae MLV-016]
 gi|221231345|ref|YP_002510497.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225854061|ref|YP_002735573.1| type I restriction enzyme [Streptococcus pneumoniae JJA]
 gi|225858347|ref|YP_002739857.1| type I restriction enzyme [Streptococcus pneumoniae 70585]
 gi|307067140|ref|YP_003876106.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|147755830|gb|EDK62874.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|172043562|gb|EDT51608.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183574880|gb|EDT95408.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183577008|gb|EDT97536.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577709|gb|EDT98237.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae MLV-016]
 gi|220673805|emb|CAR68307.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225720338|gb|ACO16192.1| type I restriction enzyme [Streptococcus pneumoniae 70585]
 gi|225722751|gb|ACO18604.1| type I restriction enzyme [Streptococcus pneumoniae JJA]
 gi|306408677|gb|ADM84104.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|332203680|gb|EGJ17747.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368]
          Length = 487

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L          +P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------NPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|21233564|ref|NP_639481.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770530|ref|YP_245292.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21115424|gb|AAM43363.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575862|gb|AAY51272.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 487

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 108/289 (37%), Gaps = 57/289 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR VV LA A+     D            + D  CG+GGFL +A+   A        
Sbjct: 135 YFTPRSVVKLAVAM----SDLQVGIKHQGCDVVIDGCCGSGGFLIEAL--AAMWKKVESS 188

Query: 237 PPILVPHGQELEPETHAVCVAGM---------LIRRLESDPRRDLSKNIQQGSTLSK--- 284
           P +      EL+ +    C+ G+          I R+      D    I Q   L K   
Sbjct: 189 PKLSQAAKNELKNDIATKCIYGIDSAKDPALARIARMNMYLHGDGGSAIYQLDALDKGLA 248

Query: 285 -----------DLFTGKRF---------HYCLSNPPFGKKWEKDKDAVEKEHKNG----- 319
                      +L   KR             L+NPPF + +E+ K    + +        
Sbjct: 249 EENNASPESRSELRDFKRVLKDNAEGFADVALTNPPFARDYERKKRGGGRAYAPSVLDAY 308

Query: 320 ELGRFGPG--LPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           EL   GP   LPK     S +FL    + L+     GGR   V+  S L         + 
Sbjct: 309 ELSYDGPAEILPKAKLKSSAMFLERYLDFLK----PGGRLVSVIDDSVL----GSKAFAT 360

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---EERRGKV 422
            R WL +  ++EA+V+LP D F R+       IL  RK    +E +G+V
Sbjct: 361 TRAWLAQKYIVEAVVSLPGDAFQRSEARVKTSILIMRKKVADDEAQGEV 409


>gi|88706060|ref|ZP_01103768.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71]
 gi|88699774|gb|EAQ96885.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71]
          Length = 115

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
          +LA  IW  A+ L GDF+ + +G+VILPF +LRRLEC LE ++  V
Sbjct: 15 NLAADIWALADLLRGDFRQSQYGRVILPFAILRRLECVLEGSKVNV 60


>gi|15900423|ref|NP_345027.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111657646|ref|ZP_01408378.1| hypothetical protein SpneT_02001156 [Streptococcus pneumoniae
           TIGR4]
 gi|14971982|gb|AAK74667.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 487

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L           P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------DPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|289771161|ref|ZP_06530539.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces lividans TK24]
 gi|289701360|gb|EFD68789.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces lividans TK24]
          Length = 735

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 33/222 (14%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L  DP   L  E  G  RT+ DP CGTG  L  A    A      ++       GQE +P
Sbjct: 242 LTPDPLADLMAELAGPARTVLDPACGTGSLLRAA---AATTRPGQEL------CGQESDP 292

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKD 308
              A+    + +         D +  I  G +L  D  TG R    L +PPF ++ W  D
Sbjct: 293 ALAALTALRLAL-------STDATVRIAAGDSLRADARTGLRADAALCHPPFNERNWGHD 345

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           + A +         R+  G P  ++  + ++ H   ++    +GG    +VL      + 
Sbjct: 346 ELAYDP--------RWEYGFPARTESELAWVQHALARVR---DGG--TVVVLMPPAAASR 392

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           R+G     +R  LL    + A++ALP       N+  +LW+L
Sbjct: 393 RSG---RRVRADLLRRGALHAVIALPVGAAPPYNLPLHLWVL 431


>gi|311899430|dbj|BAJ31838.1| hypothetical protein KSE_60720 [Kitasatospora setae KM-6054]
          Length = 652

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 48/211 (22%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSK----NIQQGSTLSKDLFTGKRFHYCLSNP 299
           GQE++P+     +A +  RRL      DL+      ++ G +L+ D F        + NP
Sbjct: 194 GQEIDPD-----LAELSRRRL------DLAGAGTVTVEAGDSLTADAFPDCSAPAAVCNP 242

Query: 300 PFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG++ W +D  A +         R+  GLP   D  + +L H+   L    + GGRA I
Sbjct: 243 PFGQRHWGRDGLAYDS--------RWAYGLPAQGDPELAWLQHVLAHL----SPGGRAVI 290

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-------- 410
            +   P       SG   IR  L+ N  ++A+++LP       ++   LW+L        
Sbjct: 291 AM---PPAAASRPSGR-RIRAELVRNGKLQAVISLPPGSASTHSMGIDLWVLGYGTRTSV 346

Query: 411 ----SNRKTEERRGKVQLINATDLWTSIRNE 437
               + R T+   G+   ++    W S+  E
Sbjct: 347 LFLTAARHTDPAAGQRHAVD----WPSVHRE 373


>gi|169833672|ref|YP_001694009.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397534|ref|YP_002037177.1| type I restriction-modification system subunit M [Streptococcus
           pneumoniae G54]
 gi|303254229|ref|ZP_07340340.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae BS455]
 gi|303260622|ref|ZP_07346586.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP-BS293]
 gi|303263067|ref|ZP_07348998.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265334|ref|ZP_07351243.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS397]
 gi|303267090|ref|ZP_07352960.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS457]
 gi|303269335|ref|ZP_07355107.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS458]
 gi|168996174|gb|ACA36786.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194357201|gb|ACF55649.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae G54]
 gi|301801397|emb|CBW34083.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae INV200]
 gi|302598832|gb|EFL65867.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae BS455]
 gi|302635767|gb|EFL66271.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638212|gb|EFL68683.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP-BS293]
 gi|302641107|gb|EFL71482.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS458]
 gi|302643352|gb|EFL73629.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS457]
 gi|302645106|gb|EFL75344.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS397]
          Length = 487

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L           P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------DPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|253563526|ref|ZP_04840983.1| type I restriction-modification system methyltransferase subunit
           [Bacteroides sp. 3_2_5]
 gi|251947302|gb|EES87584.1| type I restriction-modification system methyltransferase subunit
           [Bacteroides sp. 3_2_5]
 gi|301162172|emb|CBW21717.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis 638R]
          Length = 553

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 49/320 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S+I+E+LI+ + +       ++ TP  +  +   LL+  +  L           YDP+ G
Sbjct: 185 SSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDNVDLHS------MECYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A++H        +         Q          +   L+  L+         N
Sbjct: 239 TGTLLM-ALSHQI---GEERCTIFSQDISQRSNKMLKLNLLLNGLVSSLD---------N 285

Query: 276 IQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             QG TL      S D    ++F + +SNPPF   +   ++ +          RF  G+P
Sbjct: 286 AIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFSDTREKIA-----AMPARFWAGVP 340

Query: 330 KI---SDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWL 381
            +      SM     F+ H+ N L+      G+ AIV+ +  +    A SG E++I   +
Sbjct: 341 NVPAKKKESMAIYTCFIQHVINSLK----KTGKGAIVIPTGFI---TAKSGIENKILHKI 393

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKK 440
           +++ ++   V++P+++F  T     +       T +   KV LI+A+ L    ++  G K
Sbjct: 394 VDDKVVFGCVSMPSNVFANTGTNVSVLFFDRSATAD---KVILIDASKLGEEYKDANGLK 450

Query: 441 RRIINDDQRRQILDIYVSRE 460
           +  +ND++  +I+  +  +E
Sbjct: 451 KVRLNDEEIEKIVGTFQRKE 470


>gi|256787267|ref|ZP_05525698.1| hypothetical protein SlivT_22487 [Streptomyces lividans TK24]
          Length = 672

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 33/222 (14%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L  DP   L  E  G  RT+ DP CGTG  L  A    A      ++       GQE +P
Sbjct: 179 LTPDPLADLMAELAGPARTVLDPACGTGSLLRAA---AATTRPGQEL------CGQESDP 229

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKD 308
              A+    + +         D +  I  G +L  D  TG R    L +PPF ++ W  D
Sbjct: 230 ALAALTALRLAL-------STDATVRIAAGDSLRADARTGLRADAALCHPPFNERNWGHD 282

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           + A +         R+  G P  ++  + ++ H   ++    +GG    +VL      + 
Sbjct: 283 ELAYDP--------RWEYGFPARTESELAWVQHALARVR---DGG--TVVVLMPPAAASR 329

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           R+G     +R  LL    + A++ALP       N+  +LW+L
Sbjct: 330 RSG---RRVRADLLRRGALHAVIALPVGAAPPYNLPLHLWVL 368


>gi|15902493|ref|NP_358043.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae R6]
 gi|116516554|ref|YP_815962.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae D39]
 gi|148993496|ref|ZP_01822987.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|149003727|ref|ZP_01828572.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005623|ref|ZP_01829362.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149012612|ref|ZP_01833609.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149026394|ref|ZP_01836532.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168485629|ref|ZP_02710137.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1087-00]
 gi|168488198|ref|ZP_02712397.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP195]
 gi|225856228|ref|YP_002737739.1| type I restriction enzyme [Streptococcus pneumoniae P1031]
 gi|237649414|ref|ZP_04523666.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821513|ref|ZP_04597358.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|307126723|ref|YP_003878754.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae
           670-6B]
 gi|322387161|ref|ZP_08060771.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|15458017|gb|AAK99253.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus pneumoniae R6]
 gi|116077130|gb|ABJ54850.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae D39]
 gi|147758289|gb|EDK65290.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762563|gb|EDK69523.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763417|gb|EDK70354.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147927865|gb|EDK78886.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929277|gb|EDK80277.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|183571120|gb|EDT91648.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572897|gb|EDT93425.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP195]
 gi|225724994|gb|ACO20846.1| type I restriction enzyme [Streptococcus pneumoniae P1031]
 gi|306483785|gb|ADM90654.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae
           670-6B]
 gi|321141690|gb|EFX37185.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|332074323|gb|EGI84799.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17570]
 gi|332076346|gb|EGI86809.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA41301]
 gi|332076951|gb|EGI87413.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17545]
 gi|332204533|gb|EGJ18598.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA47901]
          Length = 487

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 59/276 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++IYE +++   +  + G  +F TPR        +L           P +  ++ D  CG
Sbjct: 148 NDIYEKILKDIQNAGNSG--EFYTPRAATDFIAEVL----------DPKLGESMADLACG 195

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +N ++     S           G E +   H + V  + +  ++ DP+    
Sbjct: 196 TGGFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-DPK---- 250

Query: 274 KNIQQGSTLSKDL--FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
             I  G+TL K++  +T  ++F   + NPPFG                 EL       P 
Sbjct: 251 --IVHGNTLEKNVREYTDDEKFDIIMMNPPFG---------------GSELETIKNNFPA 293

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
             + S+ + LF+  +  +L+      GR  ++L    LF    G G ++ +++ L++   
Sbjct: 294 ELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF----GEGVKTRLKQKLVDEFN 345

Query: 387 IEAIVALPTDLF-----FRTNIATYLWILSNRKTEE 417
           +  I+ LP  +F       TNI   L+    +KTEE
Sbjct: 346 LHTIIRLPHSVFAPYTGIHTNI---LFFDKTKKTEE 378


>gi|261868701|ref|YP_003256623.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261414033|gb|ACX83404.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 360

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 29/190 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ ++YE+ + RF     +    + TP+ +V L   +L           P   R +YDP 
Sbjct: 161 ILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYKGR-VYDPA 209

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+GGF       +    +H         +GQE  P T  +    M IR ++ D  +  +
Sbjct: 210 IGSGGFFVQTERFIT---AHQGNINQASIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA 266

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  Q   L       K+  + ++NPPF    W  +  A +         R+  G P   
Sbjct: 267 DSFAQPQHLD------KKMDFIMANPPFNISDWWSESLADDP--------RWAYGTPPKG 312

Query: 333 DGSMLFLMHL 342
           + +  +L H+
Sbjct: 313 NANFAWLQHM 322


>gi|282881941|ref|ZP_06290586.1| type I restriction-modification system methyltransferase subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281298216|gb|EFA90667.1| type I restriction-modification system methyltransferase subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 983

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 116/276 (42%), Gaps = 61/276 (22%)

Query: 144 ELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +L P T+ D    V  + +E+ ++   S  ++  E + TPR +V     L+         
Sbjct: 261 KLDPLTLTDVDSDVKGDAFEYFLKASTSTKNDLGE-YFTPRHIVKTMVRLV--------- 310

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +P +  T+YDP CGTGGFL ++  H+    A   ++ K+      +G E+   T+   +
Sbjct: 311 -NPQIGETIYDPFCGTGGFLIESFRHIYNNMARTDANLKMLREKTVYGNEI---TNTARI 366

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M                      L+ D  +  +    L+NP  GK    D+    +EH
Sbjct: 367 TKM-------------------NMILAGDGHSNIKMKDSLANPIDGKSTYIDEKG--EEH 405

Query: 317 KNG-----------ELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            NG           +  ++G    LP  ++G  + + H    ++   +  GR A+V+   
Sbjct: 406 HNGYDIVLANMPYSQKTKYGNLYDLPS-NNGDSICVQHCIKAVD-SASENGRIALVVPEG 463

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            LF        ++ R +LLEN  ++++++LP  +F 
Sbjct: 464 FLFRKDL----TKTREYLLENCQLQSVISLPQGVFL 495


>gi|325996787|gb|ADZ52192.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
          Length = 528

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    I+
Sbjct: 13  PPEKNGDFAFLLHIIKSLK----DTGKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIK 65

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ L  +LF+ T+I   + +L       R+G V +I+A+      + +G K R+ + D 
Sbjct: 66  GVIGLAPNLFYGTSIPACVIVLDKENAHARKG-VFMIDAS---KDFKKDGNKNRLRDQDV 121

Query: 449 RRQILDIYVSRENGKFSRML 468
           ++ I      +E   +S+M+
Sbjct: 122 QKMIDTFNAYKEIPYYSKMV 141


>gi|294502090|ref|YP_003566155.1| Type I restriction-modification system, M subunit [Salinibacter
           ruber M8]
 gi|294342074|emb|CBH22739.1| Type I restriction-modification system, M subunit [Salinibacter
           ruber M8]
          Length = 462

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG G  L +   H  +     + P  L   GQE++P+  A+    + I       
Sbjct: 203 IYDPACGIGRLLMEVARHHRE--EQQEDPTHLFLAGQEVDPDQAALARMAIAISGFHG-- 258

Query: 269 RRDLSKNIQQGSTLSKDLFT-GK---RFHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGR 323
                  I++G +L    FT GK   +F   L++ PP G+K   D        ++   GR
Sbjct: 259 ------RIERGDSLRDPKFTEGKALSQFDCVLADLPPPGQKPLPDV-------QDDPYGR 305

Query: 324 FG--PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F     LP  +  +  FLMH+ ++L       G AA+ +    L     G     +R+ L
Sbjct: 306 FDWTDDLPGQNGDTWAFLMHITSQL----GEEGEAAVTVPRPALQEAEPG-----LRKEL 356

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           +  +L+ A++ L + +F        L +L     E   G++      D
Sbjct: 357 VTRNLLRAVIGLDSAVFEDVPTGKVLLLLREDDVEAAGGEILFYQTPD 404


>gi|78189485|ref|YP_379823.1| type I restriction modification enzyme methylase subunit
           [Chlorobium chlorochromatii CaD3]
 gi|78171684|gb|ABB28780.1| type I restriction modification enzyme methylase subunit
           [Chlorobium chlorochromatii CaD3]
          Length = 579

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 68/312 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAED--FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  ++YE L+    SE+++  ++  F TPR ++ L T L+           P + + + D
Sbjct: 184 IQGDVYEMLL----SEIAQAGKNGQFRTPRHIIKLMTELV----------QPQLAQRIGD 229

Query: 212 PTCGTGGFLTDAMNHVA------------------DCGSHHKIPP----ILVPHGQELEP 249
           P CGT GFL  A  ++                   D G+H   P     +       L  
Sbjct: 230 PACGTAGFLLGAYQYIVTQLAIKTSDHFRGVTNMTDRGAHTFQPDEDGFVRTSVASGLTE 289

Query: 250 ETHAVCVAGMLIRRLESDPRR----DL------SKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              A+  + +    ++S   R    +L        NI    TLSK       +H  ++NP
Sbjct: 290 TAQAILQSSLYGYDIDSTMVRLGLMNLMMHGIDEPNIDYKDTLSKSYNEEAEYHIVMANP 349

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF         +++K   N  L          +   +LF+ ++   L+     GG A ++
Sbjct: 350 PF-------TGSIDKGDINENLTL------STTKTELLFVENIYRLLKR----GGTACVI 392

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF   +G+    +R+ L+E   ++A++ +P+ + F+        IL   K  E +
Sbjct: 393 VPQGVLFG--SGTAFKNLRQLLVERCELKAVITMPSGV-FKPYAGVSTAILLFTKVYESK 449

Query: 420 GKVQLINATDLW 431
            KV+      +W
Sbjct: 450 EKVRQPATHQVW 461


>gi|330467457|ref|YP_004405200.1| hypothetical protein VAB18032_17490 [Verrucosispora maris
           AB-18-032]
 gi|328810428|gb|AEB44600.1| hypothetical protein VAB18032_17490 [Verrucosispora maris
           AB-18-032]
          Length = 683

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 26/223 (11%)

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP- 268
           +D T GTG  L  A +     G+  +         QE+ P+   +    +    L +   
Sbjct: 183 FDFTSGTGSILRMAADRALRSGATTRC------FAQEINPQYALITSLRLWFVHLRAQQA 236

Query: 269 -RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
                   +  G +L  D     R    ++N PFG   W  D+ A +         R+  
Sbjct: 237 GHHTPPPVVHVGDSLLADALPDLRADVVVANFPFGIHDWGHDRLAYDP--------RWTY 288

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP  ++  + ++ H    L   PNG    A+VL      +  AG     IR  L+    
Sbjct: 289 GLPPRTEPELAWVQHALAHLS--PNG---TAVVLMPPATASRPAGR---RIRAELIRRHA 340

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GKVQLINAT 428
           + AI+ALP  L   TNI  ++W+L+    +  R G++  ++AT
Sbjct: 341 LRAIIALPAGLMLPTNIGLHIWVLAQPDPQHPRVGELLFVDAT 383


>gi|288926003|ref|ZP_06419932.1| putative type I restriction-modification system, M subunit
           [Prevotella buccae D17]
 gi|288337223|gb|EFC75580.1| putative type I restriction-modification system, M subunit
           [Prevotella buccae D17]
          Length = 399

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 128/360 (35%), Gaps = 100/360 (27%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V    YE ++    + + + A  F TPR+++     +L DPD           R L DP 
Sbjct: 26  VKGTAYETIV---SNTLKQEAGQFFTPRNIIKCMVEML-DPDQN--------CRVL-DPA 72

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-------EPETHAVC--VAGMLIRRL 264
           CG+GGFL   ++HV       KI   L P   E+        PE        A  +I   
Sbjct: 73  CGSGGFLVMVLDHV-----RRKIAKNLYPDLDEVRLEAKYNSPEVDDAVREYAEKMIFGF 127

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---------------------------------KR 291
           + DP  DL K  +    ++ D  +                                  K 
Sbjct: 128 DFDP--DLKKAARMNMVMAGDGHSNIYNINSLDYPYGSKPDVPLIAEAVNDSIKHSADKD 185

Query: 292 FHY-------------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           FH+               +NPPFG K E D +   +     EL    P         +LF
Sbjct: 186 FHFETPASNAQGKFDMIFTNPPFGSKVEVDTEISTR----FELNSTAP--------EVLF 233

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    N L+     GG+  IVL    L N    S    +R W+L +  + A V LP + F
Sbjct: 234 IEACYNFLK----PGGKMGIVLPDGILGNPNTES----VRLWILRHFKLLASVDLPVETF 285

Query: 399 F-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII----NDDQRRQIL 453
             +  +   L  L  +  EE    ++  +       + N GK RR +     DD+  ++L
Sbjct: 286 LPQVGVQASLLFLQKKTDEEMLIPIEDEDYNVFMAIVENVGKDRRGVPVYEKDDEGSELL 345


>gi|226952351|ref|ZP_03822815.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244]
 gi|226836903|gb|EEH69286.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244]
          Length = 493

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 61/259 (23%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+++ +  S    G   F TPR ++ +   L+          SP    T+ DP CGT
Sbjct: 145 DIYEYMLGKIASAGRNG--QFRTPRHIIKMIVELM----------SPKPTDTICDPACGT 192

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A  ++ D   H+       P            G + +     +    M++  +E
Sbjct: 193 AGFLVAASEYLND---HYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVE 249

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG-----KKWEKDKDAVEKEHKNG 319
            +PR      I+   +LS+       ++   L+NPPF      +   K+  AV K  K  
Sbjct: 250 -NPR------IENRDSLSEVHSHIESKYSLILANPPFAGSLDNESCAKNIQAVIKTKKTE 302

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                               +            GGRAA+++    LF   + +    +R+
Sbjct: 303 --------------------LLFLALFLRLLKTGGRAAVIVPDGVLFG--SSTAHKALRQ 340

Query: 380 WLLENDLIEAIVALPTDLF 398
            ++E   +EAI+++P+ +F
Sbjct: 341 KIVEEQKLEAIISMPSGVF 359


>gi|329121926|ref|ZP_08250539.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965]
 gi|327467372|gb|EGF12871.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965]
          Length = 674

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 142/407 (34%), Gaps = 113/407 (27%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY TSE   +  G    +N +E            IFE         R++K     KI + 
Sbjct: 218 FYATSEERSNRDGQLTVKNRIEK-----------IFE---------RVKKEKKNAKIFEA 257

Query: 140 FSGIELHPDTVP---------------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             GI LHP T+                  +    YE ++   G+ +     +F TPR+V+
Sbjct: 258 NDGINLHPRTLSYIVSELQKYSLLNTRIDIKGKAYEEIV---GANLRGDRGEFFTPRNVM 314

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH---------VADCGS--- 232
            +   ++          +P +   + D +CGTGGF+  AM H           D G    
Sbjct: 315 QMVVEMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLKSEFTKDIGKDKG 364

Query: 233 ----------HHKIPPILVPH--GQELEPETHAVCVAGMLIRRLES-------------- 266
                       KI  +   +  G ++ P+        M++    S              
Sbjct: 365 NWNDYEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMNNDGSGNILQINSLLPPHE 424

Query: 267 ---DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              D +  LS  +Q       + +    F   ++NPPFG K      A+  +    EL R
Sbjct: 425 WTDDFKTRLSSALQIDKKSIMNQYDIGFFDVIVTNPPFGSKIPIKDHAILSQF---ELAR 481

Query: 324 FGPGLPKISDGSM------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                 K    +M            LF+      L+     GGR  IVL  + L  G  G
Sbjct: 482 IWNHNKKTGKWTMTDRYQSSVSPEILFIERCYQFLK----PGGRMGIVLPDALL--GSPG 535

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           +G   IR WL++N  I A + L  D F  R    T + IL  +  EE
Sbjct: 536 TG--YIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEE 580


>gi|329939285|ref|ZP_08288621.1| type I restriction modification system protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301514|gb|EGG45408.1| type I restriction modification system protein [Streptomyces
           griseoaurantiacus M045]
          Length = 793

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 115/280 (41%), Gaps = 52/280 (18%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +  L+ +FGS  +  + +F TPR VV L   A L D D A         R +YDP    G
Sbjct: 232 FRQLVDQFGSRAALPSGEFFTPRAVVRLMRDAALGDEDSA---------RRVYDPYARAG 282

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +        +P  L   G+   P+   + +AGM +  L   P       ++
Sbjct: 283 EMLDGVAERLGGV-----VP--LTLRGES--PQRGTLRLAGMNLA-LHGIP-----VELE 327

Query: 278 QGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            G+      +    G R    L+NPPF         AV K  +  +   +  G P     
Sbjct: 328 AGTAAPWNERAWPKGHRADLILTNPPFNAH-----GAVPKPREGID---WPYGPPPSGSP 379

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG----ESEIRRWLLENDLIEAI 390
           +  +L H+   L+      GRA +V+  S      AG+     E EIR  L+E+  +E I
Sbjct: 380 AFAWLQHVLVSLK----DEGRAGVVMPVS------AGTSTDVREREIRSRLVEDGAVECI 429

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           VALP  LF    ++  LW L  R +   R ++  ++A DL
Sbjct: 430 VALPPQLFSGAQVSVCLWFL--RSSAAVREEILFVDARDL 467


>gi|260906089|ref|ZP_05914411.1| N-6 DNA methylase [Brevibacterium linens BL2]
          Length = 490

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 115/284 (40%), Gaps = 62/284 (21%)

Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           A LL K+    S I +   DT  D     +YE+L+ +  S  + G   F TPR ++ L  
Sbjct: 124 AHLLSKVVDLLSDIPMDKRDTNGD-----LYEYLLSQISSSGTNGQ--FRTPRHIIDLMV 176

Query: 189 ALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----- 242
            +    PDD +            DP CGT GFL  A   + +  SH   P +        
Sbjct: 177 KMSAPRPDDEI-----------CDPACGTAGFLVAASEQLRE--SH---PEVFTNKEQRH 220

Query: 243 -------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHY 294
                  HG + +     +    ML+  +E         +I+   +LS+++    +++  
Sbjct: 221 FFHNSMFHGYDFDSTMLRIGSMNMLLHGIEQ-------PDIRYRDSLSENVSAEAEKYTL 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF         +++ E  + +L R       +       L        L P  GG
Sbjct: 274 ILANPPFAG-------SLDYEATSQDLQRV------VKTKKTELLFLALFLKLLKP--GG 318

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           RAA+++    LF   +     E+RR L+E   ++ +V LP+ +F
Sbjct: 319 RAAVIVPDGVLFG--SSKAHKELRRMLVEEQKLDGVVKLPSGVF 360


>gi|295112012|emb|CBL28762.1| Type I restriction-modification system methyltransferase subunit
           [Synergistetes bacterium SGP1]
          Length = 500

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 103/252 (40%), Gaps = 48/252 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ +   ++           P     + DP CGT
Sbjct: 157 DVYEYLLSKIATAGVNGQ--FRTPRHIIRMMVDMM----------EPKADEIVCDPACGT 204

Query: 217 GGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            GFL    +++ +              H +  +   HG +++     +    M+   +++
Sbjct: 205 SGFLVAVSDYLKENRKQEVFFNSQNKDHYMNHMF--HGYDMDRTMLRIGAMNMMAHGVDN 262

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    I+   +LS      +++   L+NPPF  K   D D V  +           
Sbjct: 263 -------PFIEYRDSLSDQNPDREKYTLILANPPF--KGSLDADIVSTDLLK-------- 305

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LFL      L++    GGR A ++    LF   + +    +R+ L+E + 
Sbjct: 306 -VCKTRKTELLFLALFLRMLKV----GGRCACIVPDGVLFG--SSTAHKAVRKELIEGNR 358

Query: 387 IEAIVALPTDLF 398
           +EA++++P+ +F
Sbjct: 359 LEAVISMPSGVF 370


>gi|307290562|ref|ZP_07570473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498383|gb|EFM67889.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 194

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 12/109 (11%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SN 412
           G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  N
Sbjct: 11  GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKN 67

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           R+T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 68  RQTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 108


>gi|319940141|ref|ZP_08014494.1| type IIS restriction enzyme M protein [Streptococcus anginosus
           1_2_62CV]
 gi|319810612|gb|EFW06942.1| type IIS restriction enzyme M protein [Streptococcus anginosus
           1_2_62CV]
          Length = 690

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 68/277 (24%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           +TPR V  L   L     D+           ++D   G+GG L  AMN + D        
Sbjct: 365 LTPRYVALLMAKLARVNKDSY----------VWDFATGSGGLLVAAMNLMLDDAKKEITS 414

Query: 238 PILVPH-----------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           P  +             G E+ PE + + V  M++         D S NI Q  +L K  
Sbjct: 415 PDELREKEEKIKAEQILGIEILPEIYMLAVLNMILMG-------DGSSNILQDDSLKK-- 465

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F GK + Y   N  F                  ++    P   +  +G M F+     K 
Sbjct: 466 FDGK-YGYGKDNENFP----------------ADVFLLNPPYSETGNG-MNFV-----KR 502

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
            L    GG A+I++  S      AG+G++ EI + +LE++ + A + +P D+F  ++N+ 
Sbjct: 503 ALSMMKGGYASIIIQDS------AGAGKAKEINQKILEHNTLLASIKMPMDIFIGKSNVQ 556

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           T +++    +  E + +V+ I+       +RN+G KR
Sbjct: 557 TSIYVFKVGEKHEAKHRVKFID-------LRNDGYKR 586


>gi|307290732|ref|ZP_07570633.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498212|gb|EFM67728.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 193

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 12/109 (11%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL-SN 412
           G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  N
Sbjct: 11  GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKN 67

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           R+T +    V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 68  RQTRD----VLFIDASREFVKGKNQNK----LSEENIQKILETYAERKD 108


>gi|110004972|emb|CAK99303.1| hypothetical n-6 adenine-specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 415

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 146/376 (38%), Gaps = 58/376 (15%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
           T  A R++ LA    N+    F K+    F           G     N+++  I +  + 
Sbjct: 28  TLGATRDEVLAQQLINV---IFCKIYDERFTKPESIIELRAGINENENDVKKRILNIFEK 84

Query: 111 AKAIF-EDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            K  + E+ D S  I+ L+   ++Y +   +N+  IE   D + D      +E  I   G
Sbjct: 85  VKRKYKENIDSSDNIS-LDAKSMVYIVGELQNWCLIEAERDIIADA-----FEIFI---G 135

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
             +  G   F TPR+VV +   +L DP+D            + DP+CG+ GFL +++ ++
Sbjct: 136 HALKGGQGQFFTPRNVVKMMVEIL-DPNDE---------DLIIDPSCGSDGFLIESLRYI 185

Query: 228 --------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR---- 269
                         A+     K+  + +   +E++ +     VA   +  L         
Sbjct: 186 WNKLDIEGKRLDWNAENLKEEKM-EVALNKIREIDKDYFLTRVAKAYMAILGDGKSGIFC 244

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-------KDKDAVEKEHKNGELG 322
            D  +NI      ++      +F   L+NPPFG K         K  +   K  K+ + G
Sbjct: 245 EDTLENINTWDYKTRIKIDKGKFSILLTNPPFGSKIPVRGEEKLKQYELAYKWKKDKKSG 304

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +  G  K+++     ++ +   ++L   GG   AIVL      N         IR W+ 
Sbjct: 305 IWSKG--KLNEKEAPQVLFIERNIQLLKEGGN-MAIVLPDGIFGNDTFAF----IRNWIK 357

Query: 383 ENDLIEAIVALPTDLF 398
               I  I+ LP + F
Sbjct: 358 NQGRILGIIDLPIETF 373


>gi|262371154|ref|ZP_06064475.1| type I restriction enzyme, M protein [Acinetobacter johnsonii
           SH046]
 gi|262313884|gb|EEY94930.1| type I restriction enzyme, M protein [Acinetobacter johnsonii
           SH046]
          Length = 504

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 61/259 (23%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+++ +  S    G   F TPR ++ +   L+           P    T+ DP CGT
Sbjct: 156 DIYEYMLGKIASAGQNG--QFRTPRHIIKMIVELM----------QPKPTDTICDPACGT 203

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A  ++ D   H+       P            G + +     +    M++  +E
Sbjct: 204 AGFLVAASEYLND---HYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVE 260

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG-----KKWEKDKDAVEKEHKNG 319
            +PR      I+   +LS+       ++   L+NPPF      +   K+  AV K  K  
Sbjct: 261 -NPR------IENRDSLSETHSHIESKYSLILANPPFAGSLDNESCAKNIQAVVKTKKTE 313

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                               +            GGRAA+++    LF   +     ++R+
Sbjct: 314 --------------------LLFLALFLRLLKTGGRAAVIVPDGVLFG--SSKAHKDLRQ 351

Query: 380 WLLENDLIEAIVALPTDLF 398
            ++E   +EAI+++P+ +F
Sbjct: 352 KIVEEQKLEAIISMPSGVF 370


>gi|194466428|ref|ZP_03072415.1| N-6 DNA methylase [Lactobacillus reuteri 100-23]
 gi|194453464|gb|EDX42361.1| N-6 DNA methylase [Lactobacillus reuteri 100-23]
          Length = 328

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 27/140 (19%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE----LPP 350
            +SNPP+  KW+    A  +E       RF  G+P  S+ +  F++   +K +    L P
Sbjct: 4   TISNPPYNMKWQHPFFAQSQE-------RFMLGVPPQSNANYAFILTALSKQDKAVFLLP 56

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           NG      VL+++          E  I++ L+E + +EA++ LP  +F  T+I T L I 
Sbjct: 57  NG------VLTTN-------NKEEQAIKKSLIEKNYLEAVITLPEKMFESTSIPTSLLIF 103

Query: 411 SNRKTEERRGKVQLINATDL 430
           +    E++   + +INA  L
Sbjct: 104 NK---EKKTSNILMINADSL 120


>gi|242309003|ref|ZP_04808158.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489]
 gi|239524427|gb|EEQ64293.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489]
          Length = 542

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 34/240 (14%)

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +A  ++ S  L+      GE  +R++L++  L+EAI+  P ++F        L ILS ++
Sbjct: 242 KAVFIVRSLLLYKA---CGE-RLRKYLIKQKLLEAIIEFPRNIFPHQMEDFSLLILSKQE 297

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            +    KV  INA +L+     EGK  ++I+ +    I D+Y S++N + SR++ Y    
Sbjct: 298 NK----KVLFINAQNLFVK---EGKYNKLIDIE---MICDLYFSKQNTEISRLVAYENI- 346

Query: 475 YRRIKVLRPLRMSFIL----DKTGLARLE-ADITWR--KLSPLHQSFWLDILKPMMQQIY 527
                 L   + S+ +    DK  L   E  +  +R  ++        +D     ++   
Sbjct: 347 -----YLENFKTSYYIKGQNDKKTLNLAEFVECIYRGQRVEVKKDEVLIDCYNVGIKDFL 401

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587
            YG +E F + S KSN+ +  ++K     I+  +           P   + GE I D N+
Sbjct: 402 EYGLSEEFDEFSPKSNQKRIEQLKIKPYDILLSMRGIS-------PKVAIIGEGIGDKNI 454


>gi|311900119|dbj|BAJ32527.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 479

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 44/289 (15%)

Query: 154 VMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           V+S++ E  ++   GS+      D+ TPR +V L  A +           PG   T+ DP
Sbjct: 141 VLSDLLERALQHLRGSD-----PDYYTPRALVDLVVATV----------RPGPDDTITDP 185

Query: 213 TCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            C  G FL  A  ++   D G+  +        G+    E+  + +AG  +  L      
Sbjct: 186 ACKAGSFLIAAHRYIREHDPGTEPR-----SAGGRIRGNESALIGLAGANLL-LHGITEH 239

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP- 329
                +   S  +     G      ++NPPFG     +K  VE              LP 
Sbjct: 240 ADCPGVTNESPFALPPMPGATV--VIANPPFGTMKGGEKSVVESRAD----------LPV 287

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + S  ++ +L H+ + L LP   GGRA +++  S LF   A     ++RR LL+   +  
Sbjct: 288 RTSSKALDYLQHIMSVL-LP---GGRAGVIVPDSVLF---ATGAARDVRRLLLQTFDVHT 340

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++ LP   F          +L +R+  ERRG    +   DL T     G
Sbjct: 341 LIRLPAGAFPTARGVRTSILLFDRQPTERRGPGGPLWVYDLRTGSSPTG 389


>gi|17158081|ref|NP_478077.1| SsmT protein [Corynebacterium glutamicum]
 gi|17059600|emb|CAD12208.1| SsmT protein [Corynebacterium glutamicum]
          Length = 848

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 121/297 (40%), Gaps = 60/297 (20%)

Query: 204 GMIRTLYDPTCGTGGFLTDAM-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           G+   + DP  GTG FL +A+     D   H ++       G + +P  + + +  M+  
Sbjct: 335 GITDKVVDPAMGTGDFLVEALEKRRGDDDIHQRL------FGADRDPSAYELAIVNMI-- 386

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCLSNPPFGKKW-EKDKDAVE---- 313
                    L+K+ Q G  L   +          +  L NPPFG +  E+ K  +E    
Sbjct: 387 ---------LNKDGQTGLVLQDSIKNHTLWANEMNVALCNPPFGSRTVERSKSVLEAYDL 437

Query: 314 ----KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
               +E  NG + +    L     G +LF+      L       GR  I+L    L    
Sbjct: 438 GYKWEEDSNGVMYKTDEVLSSQQLG-ILFIERCWKML----TDQGRLGIILPEGYL---- 488

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSNRKTEERRG------- 420
           +G+    +R+W++++ ++ A+V LP  +F ++  ++ + + IL       R         
Sbjct: 489 SGAKYKYLRQWIIDHFIVHAVVELPRRMFVKSDADLRSNILILEKSDAPSRNAGRKIYAS 548

Query: 421 ---KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-DYRTF 473
              KV    A D   + + + +   +++DD+   +LD         F+R+L +Y+ F
Sbjct: 549 MVRKVGYKLAGDFSATPQQDPETGLVLHDDENEPLLD-------SDFNRVLEEYKQF 598


>gi|332299058|ref|YP_004440980.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
 gi|332182161|gb|AEE17849.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
          Length = 509

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 46/275 (16%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++ YE L++   +      E F TPR +    T  + D  D      P +   + D  CG
Sbjct: 161 NDFYETLLKGLQNGGKATGE-FYTPRAI----TKFICDHVD------PKIGERVADFACG 209

Query: 216 TGGFLTDAMNHV-ADCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFL +A++H+ A   S   I  I    +G E +   + +    ML+  ++       +
Sbjct: 210 TGGFLAEAISHLMAQAKSPKDITTIQNSIYGIEWKQLPYMLATTNMLLHDID-------N 262

Query: 274 KNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            +I  G  L+ ++   +   +++  L NPPFG ++ K            +L  F   L  
Sbjct: 263 PDIVHGDGLALNVLNLQPKDKYNCILMNPPFGGEFNK-----------SDLQNFPDDLAS 311

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +   LE      GR  +VL    LFN  + + +  +++ L+    +  I
Sbjct: 312 -SESADLFVARIIYCLE----KDGRCGLVLPDGLLFN--SDNSKVNLKKKLMTECNLHTI 364

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           + LP+ +F     A Y  I +N    ++ GK + I
Sbjct: 365 IRLPSSVF-----APYTSINTNLLFFDKTGKTEEI 394


>gi|158522735|ref|YP_001530605.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511561|gb|ABW68528.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 554

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 104/266 (39%), Gaps = 54/266 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    S    G   F TPR ++ +   L+           P +   + DP 
Sbjct: 172 IQGDVYEMLLSEIASAGKNG--QFRTPRHIIKMMAELV----------QPQLGHRIADPA 219

Query: 214 CGTGGFLTDAMNHV----ADCGSHHKIPP-----ILVPHGQELEPETHAVCVAGMLIRRL 264
           CGTGGFL  A  H+    A       + P     +       L  +  A+  + +    +
Sbjct: 220 CGTGGFLLGAYQHIVTQLAKKAGKKDLQPDEDGFVRTSVAAGLTEKAQAILQSSLYGYDI 279

Query: 265 ESDPRRDLSKN----------IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           +S   R    N          I    TLSK       +   ++NPPF         +++K
Sbjct: 280 DSTMVRLGLMNLMMHGIDEPQIDYKDTLSKGYLEEAEYDVVMANPPF-------TGSIDK 332

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
              N  L          +   +LF+ ++   L+     GG A +++    LF    GSG+
Sbjct: 333 GDINENLTL------STTKTELLFVENIYRLLK----KGGTACVIVPQGVLF----GSGK 378

Query: 375 S--EIRRWLLENDLIEAIVALPTDLF 398
           +   +R+ L+E   ++A+V +P+ +F
Sbjct: 379 AFKNLRQLLVERCELKAVVTMPSGVF 404


>gi|323358027|ref|YP_004224423.1| type I restriction-modification system methyltransferase subunit
           [Microbacterium testaceum StLB037]
 gi|323274398|dbj|BAJ74543.1| type I restriction-modification system methyltransferase subunit
           [Microbacterium testaceum StLB037]
          Length = 494

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 51/253 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCG 215
           +IYE+++ R  +  + G   F T R ++ L   L    PDD +            DP  G
Sbjct: 153 DIYEYMLLRLSTSGTNG--QFRTARHIIQLMVDLQQPRPDDRII-----------DPAVG 199

Query: 216 TGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           T GFL  A  ++          A   +H   P      G + +     +    ML+  +E
Sbjct: 200 TAGFLITAEEYLRAHHPEIWTDAATRAHFNGPMFT---GYDSDASMARIASMNMLLHGVE 256

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  +  I++  +LS+       +   L+NPPF      D + V K+ +        
Sbjct: 257 -------NPTIERADSLSEGHPGLNEYTLVLANPPFAGSL--DYETVAKDLQK------- 300

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LFL+ +   L      GGRAA+++    LF   + +    +R+ L++  
Sbjct: 301 --VVKTRKTELLFLVLMIRML----RNGGRAAVIVPEGVLFG--SSNAHKAVRKMLVDEH 352

Query: 386 LIEAIVALPTDLF 398
            ++A++ LP+  F
Sbjct: 353 KLDAVIKLPSGTF 365


>gi|255261889|ref|ZP_05341231.1| type I restriction-modification system, M subunit [Thalassiobium
           sp. R2A62]
 gi|255104224|gb|EET46898.1| type I restriction-modification system, M subunit [Thalassiobium
           sp. R2A62]
          Length = 512

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 54/256 (21%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +++E+++ +  S    G   F TPR +++L   L+          +P    T+ DP  G
Sbjct: 149 GDVFEYMLGKIASAGQNGQ--FRTPRHIINLMVNLM----------APTPQDTICDPAAG 196

Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPETHAVCVAGMLIRR 263
           T GFL  +  ++ D   HH  P +L            + HG + +     +    M +  
Sbjct: 197 TCGFLVQSGEYLRD---HH--PKMLRDKDQRAHFHNDMFHGFDFDSTMLRIGAMNMTLHG 251

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +E+        ++    +L+++    + R+   L+NPPF      D D   K+       
Sbjct: 252 VEN-------PDVAYRDSLAEEHGADEGRYSLILANPPFAGSL--DYDTTSKD------- 295

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L K+       L+ +A  L L    GGRAA+V+    LF   +     +IR+ L+
Sbjct: 296 -----LLKMVKTKKTELLFMALFLRLM-RTGGRAAVVVPDGVLFG--SSKAHKDIRKMLV 347

Query: 383 ENDLIEAIVALPTDLF 398
           E+  ++AI+ +P+ +F
Sbjct: 348 EDHKLDAIIKMPSGVF 363


>gi|226951290|ref|ZP_03821754.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244]
 gi|226837963|gb|EEH70346.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244]
          Length = 493

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 61/259 (23%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+++ +  S    G   F TPR ++ +   L+           P    T+ DP CGT
Sbjct: 145 DIYEYMLGKIASAGQNG--QFRTPRHIIKMIVELM----------KPRPTDTICDPACGT 192

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A  ++ D   H+       P            G + +     +    M++  +E
Sbjct: 193 AGFLVAASEYLND---HYSTEIFANPAAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVE 249

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG-----KKWEKDKDAVEKEHKNG 319
            +PR      I+   +LS+      +++   L+NPPF      +   K+  AV K  K  
Sbjct: 250 -NPR------IENRDSLSETHSHIAEKYSLILANPPFAGSLDNESCAKNIQAVVKTKKTE 302

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                               +            GGRAA+++    LF   + +    +R+
Sbjct: 303 --------------------LLFLALFLRLLKTGGRAAVIVPDGVLFG--SSTAHKALRQ 340

Query: 380 WLLENDLIEAIVALPTDLF 398
            ++E   +EAI+++P+ +F
Sbjct: 341 KIVEEQKLEAIISMPSGVF 359


>gi|207722056|ref|YP_002252494.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2]
 gi|206587230|emb|CAQ17814.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2]
          Length = 481

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 109/285 (38%), Gaps = 58/285 (20%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +    LL K+ +    I LH   V       +Y+ L+ R    V +G   F TPR +V  
Sbjct: 120 MPTPALLAKVVQQLDAIPLHRRDV----RGAVYDALLGRI-PLVGQGGR-FHTPRHIVRF 173

Query: 187 ATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------ADCGSH 233
              L   DP D           TL DP  GTG FL  A  ++                 H
Sbjct: 174 MVELTRPDPSD-----------TLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHFH 222

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           H +      HG E++     +    +L+  +E    RD        +    D      + 
Sbjct: 223 HGMF-----HGYEIDRAMLRIGSMNLLLHGVEGPDLRD------HDALAPTDANEAGAYS 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L++PPF    + D  +V+ +     L R      +     +LFL    + L+     G
Sbjct: 272 LVLAHPPF--TGDVDHGSVDPD----LLHRV-----RTRKAELLFLARCLHLLK----PG 316

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GRAA+++    LF   +G     +RR L+EN  +E ++ LP  +F
Sbjct: 317 GRAAVIVPDGVLFG--SGLAHRTLRRMLVENHRLEGVIKLPAGVF 359


>gi|316985077|gb|EFV64030.1| N-6 DNA Methylase family protein [Neisseria meningitidis H44/76]
          Length = 157

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 17/140 (12%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+  P+G G  AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLK--PSGKG--AIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR----GKVQLINATDLWT-----SIRNEG 438
           + I+ LP +LF+ T I   + ++     +  +    G  Q+I+   ++          +G
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFIKDG 130

Query: 439 KKRRIINDDQRRQILDIYVS 458
            K R+   D  + I+D + +
Sbjct: 131 NKNRLREQDIHK-IIDTFTN 149


>gi|313673365|ref|YP_004051476.1| restriction modification system DNA specificity domain
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940121|gb|ADR19313.1| restriction modification system DNA specificity domain
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 865

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 57/262 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++     L+           P     + DP C
Sbjct: 135 LGDAFEYLLLVLGSQGDAG--QFRTPRHIIDFMVELV----------GPKKNDLILDPAC 182

Query: 215 GTGGFLTDAMNHVADCGSHHK--------IPPILVPH----------GQELEPETHAVCV 256
           GT GFL  A  ++    +  K        I  +L P           G ++ P+   + +
Sbjct: 183 GTAGFLISAYKYIVRENTSEKYRSSNGNGIGDLLTPEERKKLLTNFKGYDISPDMVRISL 242

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M +     DP+      I +  TL+ +    +     L+NPPF       K  + K H
Sbjct: 243 VNMYLHGF-VDPK------IFEYDTLTSEDRWNEYADVILANPPFMTP----KGGI-KPH 290

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K     RF     + +   +LF+ ++A    L PN  GRAA+++    +F  ++ +   +
Sbjct: 291 K-----RFS---VQSNRSEVLFVDYIAE--HLTPN--GRAAVIVPEGIIF--QSANAYKQ 336

Query: 377 IRRWLLENDLIEAIVALPTDLF 398
           +R+ L+E  L  A+V+LP  +F
Sbjct: 337 LRKMLVEKYLY-AVVSLPAGVF 357


>gi|170718360|ref|YP_001783586.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826489|gb|ACA31860.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 461

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 125/339 (36%), Gaps = 70/339 (20%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           PD   D  +    E+   R         +DF TP  +  L + L  + D  L        
Sbjct: 41  PDLSQDCFLQEFQENFADR-----KSLKQDF-TPSAICQLVSRLTPEVDSVL-------- 86

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               D   GTG              +  K+ P    + QE   E  A  +  + +R + +
Sbjct: 87  ----DVCAGTGALTI----------AKWKVNPNATFYCQEYSKEAIAFLLFNLCVRGITA 132

Query: 267 DPRR------------DLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +              L++N Q     +  L + G +    +SNPP+  KW    D   
Sbjct: 133 EVKHCDVLTGETFAEYRLTRNGQYSDIENTKLDWRGLKVDCVVSNPPYSAKWNPVSDE-- 190

Query: 314 KEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                    RF   GL   +     F++H  + L+      G A  +L    LF G   +
Sbjct: 191 ---------RFEYFGLAPKNAADYAFVLHGLHHLK----EEGTAHFILPHGVLFRG---N 234

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E +IR+ L+E     +++ LP +LF    I T +     + ++     + +I+A DL+ 
Sbjct: 235 SEGKIRQKLIEQGYFSSVIGLPDNLFISAKIPTAILTFKKQSSD-----IYVIDAADLF- 288

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
               + K   I+  +   Q+L  Y  R N  K + + +Y
Sbjct: 289 ---EKAKSNNIMRPEHVNQVLTAYQLRHNIDKLAHLANY 324


>gi|311109506|ref|YP_003982359.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans
           A8]
 gi|310764195|gb|ADP19644.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans
           A8]
          Length = 492

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 106/267 (39%), Gaps = 56/267 (20%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D +P  DR    ++YE+++ +  S    G   F TPR ++ L   ++          +P 
Sbjct: 132 DAIPMDDRDTKGDLYEYMLGKIASAGQNG--QFRTPRHIIKLMVEMM----------APK 179

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP------------HGQELEPETH 252
              T+ DP CGT GFL  A  ++     HH    I               HG + +    
Sbjct: 180 PADTICDPACGTAGFLVAAAEYL----QHHHRNEIYTDQASAKRFNHDTFHGFDFDSTML 235

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDA 311
            V    ML+  +E       +  I+   +LS+       +F   L+NPPF         +
Sbjct: 236 RVGSMNMLLHGVE-------NPAIENRDSLSESHAGVEGQFSLILANPPFAG-------S 281

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++ E    +L R       +       L        L P  GGRAA+++    LF   + 
Sbjct: 282 LDYESTAQDLQRM------VKTKKTELLFLALFLRLLKP--GGRAAVIVPDGVLFG--SS 331

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF 398
                +R+ L+E   ++AI+++P+ +F
Sbjct: 332 KAHKTLRQMLVEEQKLDAIISMPSGVF 358


>gi|260752046|ref|YP_003237561.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|257767516|dbj|BAI39010.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
          Length = 57

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFK 27
          M EF GSAAS A+FIWKNAEDLWG F+
Sbjct: 1  MAEFVGSAASQADFIWKNAEDLWGGFQ 27


>gi|315638030|ref|ZP_07893215.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481878|gb|EFU72497.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 496

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 49/255 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE  ++   S  + G  +F TPR V      +L          SP +  ++ D  C
Sbjct: 146 LCKVYESFLKTLQSAGNAG--EFYTPRAVTEFMVEML----------SPKLGESVADLAC 193

Query: 215 GTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFL  A + +       S  K+      +G E +     +C   +LI  +E      
Sbjct: 194 GTGGFLISAAHFLEKQVSLTSERKVFETSF-YGVEKKSLPFLLCATNLLINGIE------ 246

Query: 272 LSKNIQQGSTLS--------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            + N++ G+            +L    +F   L NPP+G              +  ++  
Sbjct: 247 -NPNLKHGNAFEFSDFEDFDINLTKYPKFDIILMNPPYGGN-----------ERGNDIKH 294

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F P   K S+ + LF+  + ++L       GR+A+VL    LF   A + +  ++R LL 
Sbjct: 295 F-PQEYKSSETADLFMALILHRLSYK----GRSAVVLPDGFLFG--ADNAKINLKRKLLS 347

Query: 384 NDLIEAIVALPTDLF 398
           +  +  I+ LP  +F
Sbjct: 348 DFNLYLILRLPKSVF 362


>gi|148264152|ref|YP_001230858.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146397652|gb|ABQ26285.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 506

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 51/276 (18%)

Query: 132 LLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           LL ++ +  S + +      DR    ++YE+++ +  +    G   F TPR ++ +   L
Sbjct: 123 LLERVVEQISQVPME-----DRDTKGDLYEYMLSKLTTAGRNG--QFRTPRHIIKMMVEL 175

Query: 191 LLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDA----MNHVADCGSHHKIPPIL---VP 242
           +   PDD            + DP CGT GFL  A      H  D   + K+       + 
Sbjct: 176 MQPRPDD-----------IICDPACGTAGFLVAAGEYLREHHGDLFHNEKLKKHFNEKLF 224

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G + +     +    M++  +E       +  I+   +LS        +   L+NPPF 
Sbjct: 225 NGFDFDSTMLRIASMNMMLHGVE-------NPAIEARDSLSSAADIADAYTLILANPPF- 276

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K   D+D V K     +L R      K     +LF+  +   L+     GGR A+++  
Sbjct: 277 -KGSLDEDTVAK-----DLLR----TVKTKKTELLFIALMLRLLK----PGGRCAVIVPD 322

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             LF   +     ++R+ L++   +EA++++P+ +F
Sbjct: 323 GVLFG--SSKAHLDLRKILVDGHKLEAMISMPSGVF 356


>gi|83746140|ref|ZP_00943194.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum UW551]
 gi|207741830|ref|YP_002258222.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609]
 gi|83727106|gb|EAP74230.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum UW551]
 gi|206593214|emb|CAQ60141.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 109/285 (38%), Gaps = 58/285 (20%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +    LL K+ +    I LH   V       +Y+ L+ R    V +G   F TPR +V  
Sbjct: 120 MPTPALLAKVVQQLDAIPLHRRDV----RGAVYDALLGRI-PLVGQGGR-FHTPRHIVRF 173

Query: 187 ATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------ADCGSH 233
              L   DP D           TL DP  GTG FL  A  ++                 H
Sbjct: 174 MVELTRPDPSD-----------TLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHFH 222

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           H +      HG E++     +    +L+  +E    RD        +    D      + 
Sbjct: 223 HGMF-----HGYEIDRAMLRIGSMNLLLHGVEGPDLRD------HDALAPTDANEAGAYS 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L++PPF    + D  +V+ +     L R      +     +LFL    + L+     G
Sbjct: 272 LVLAHPPF--TGDVDHGSVDPD----LLHRV-----RTRKAELLFLARCLHLLK----PG 316

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GRAA+++    LF   +G     +RR L+EN  +E ++ LP  +F
Sbjct: 317 GRAAVIVPDGVLFG--SGLAHRTLRRMLVENHRLEGVIKLPAGVF 359


>gi|291004531|ref|ZP_06562504.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 682

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 127/317 (40%), Gaps = 60/317 (18%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           V + A  + TP+ V  L   L  D  + +F           DP CGTGG L+ A+   A+
Sbjct: 154 VPDTAGAYATPQPVAELMANLASDYPECVF-----------DPACGTGGLLSAAVGRGAN 202

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFT 288
                ++      +GQ+      A+ V   L   RL+ +   + +     G +L  D F 
Sbjct: 203 -----RL------YGQD------AIDVQATLTDVRLKVEAVANAAVAF--GDSLRADAFP 243

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             R    L NPPFG + W  D  A +         R+  GLP  S+  + ++ H    LE
Sbjct: 244 DTRVDTVLCNPPFGVRDWGHDDLAYDP--------RWVYGLPPRSESELAWVQHCLAHLE 295

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A +++   P       SG   +R  L+    + A++ LP       +++ ++
Sbjct: 296 ----PGGLAVVLM---PPGAAERPSGR-RVRAELIRQGALRAVIGLPPGAAPPLHLSLHI 347

Query: 408 WILSNRKTEERRGK-VQLINAT----------DLWTSIRNEGKKRRIIND-DQRRQILDI 455
           W+L+        GK V  ++A+          +LW        +   + D  QR  I+D+
Sbjct: 348 WVLTCPDEALATGKSVLFVDASSGSVSDQRIVELWRDFDEAEDRFEAVPDVAQRLSIVDL 407

Query: 456 YVSRENGKFSRMLDYRT 472
             +  +   +R +  RT
Sbjct: 408 LDATVDVTPARRVHIRT 424


>gi|38347910|ref|NP_941159.1| hypothetical protein SMR0086 [Serratia marcescens]
 gi|38259387|emb|CAE51612.1| hypothetical protein SMR0086 [Serratia marcescens]
          Length = 61

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFK 27
          M EF GSAAS A+FIWKNAEDLWG F+
Sbjct: 5  MAEFVGSAASQADFIWKNAEDLWGGFQ 31


>gi|293609931|ref|ZP_06692233.1| type I restriction enzyme [Acinetobacter sp. SH024]
 gi|292828383|gb|EFF86746.1| type I restriction enzyme [Acinetobacter sp. SH024]
          Length = 498

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 61/259 (23%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE+++ +  S    G   F TPR ++ +   L+           P    T+ DP CGT
Sbjct: 150 DIYEYMLGKIASAGQNG--QFRTPRHIIKMIVELM----------QPKPTDTICDPACGT 197

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRLE 265
            GFL  A  ++ D   H+       P            G + +     +    M++  +E
Sbjct: 198 AGFLVAASEYLND---HYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVE 254

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG-----KKWEKDKDAVEKEHKNG 319
            +PR      I+   +LS+       ++   L+NPPF      +   K+  AV K  K  
Sbjct: 255 -NPR------IENRDSLSETHSHIESKYSLILANPPFAGSLDNESCAKNIQAVVKTKKTE 307

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                               +            GGRAA+++    LF   + +    +R+
Sbjct: 308 --------------------LLFLALFLRLLKTGGRAAVIVPDGVLFG--SSTAHKALRQ 345

Query: 380 WLLENDLIEAIVALPTDLF 398
            ++E   +EAI+++P+ +F
Sbjct: 346 KIVEEQKLEAIISMPSGVF 364


>gi|304387518|ref|ZP_07369707.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|254674213|emb|CBA09997.1| type I restriction enzyme M protein [Neisseria meningitidis
           alpha275]
 gi|304338405|gb|EFM04526.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 157

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 16/134 (11%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+  P+G G  AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLK--PSGKG--AIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR----GKVQLINATDLWT-----SIRNEG 438
           + I+ LP +LF+ T I   + ++     +  +    G  Q+I+   ++          +G
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFIKDG 130

Query: 439 KKRRIINDDQRRQI 452
            K R+   D  + I
Sbjct: 131 NKNRLREQDIHKII 144


>gi|295092360|emb|CBK78467.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 493

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 55/310 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+     ++   LL ++     G++   D         IYE +++   S  S G  +F T
Sbjct: 114 FADANQYMKDGVLLRQVINVIDGLDFG-DYEESHAFGEIYETILKELQSAGSSG--EFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-------ADCGS 232
           PR V      ++          +P +   + D  CGTGGFLT  +  +        D  +
Sbjct: 171 PRAVTDFMAKMI----------NPQIGEQVADFACGTGGFLTSWLKELETKIETTEDQAA 220

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TG 289
           + +       +G E +   + +C+  ML+  +      D+ K I   ++L KD+      
Sbjct: 221 YDR-----SIYGIEKKQFPYMLCITNMLLHGI------DVPK-IYHDNSLLKDVLDYTMD 268

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   L NPP+G             ++  E+    P     S+ + LF+  +  +L+  
Sbjct: 269 DQFDVILMNPPYGG------------NEKTEVKNHFPADLASSETADLFMSVIMYRLK-- 314

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
               GRAA++L    LF     + +  I++ L     +  ++ +P  +F   T+I T + 
Sbjct: 315 --KNGRAAVILPDGFLFG--TDNAKVAIKKKLFSEFNLHTVIRMPHSVFAPYTSITTNIL 370

Query: 409 ILSNRK-TEE 417
              + K TEE
Sbjct: 371 FFDHTKPTEE 380


>gi|257092509|ref|YP_003166150.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045033|gb|ACV34221.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 516

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 109/268 (40%), Gaps = 59/268 (22%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D VP  DR    ++YE+++ +  S    G   F TPR ++ L   L           +P 
Sbjct: 142 DAVPMEDRDTKGDVYEYMLGKIASAGQNG--QFRTPRHIIRLMVELT----------APQ 189

Query: 205 MIRTLYDPTCGTGGFLTDAM--------NHVADCGS----HHKIPPILVPHGQELEPETH 252
               + DP CGT GFL  A         N + D G     HH++      HG + +    
Sbjct: 190 PSDVICDPACGTAGFLVTAGEVLRQRHPNLLHDAGRREHFHHRMF-----HGFDFDNTML 244

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL--SNPPFGKKWEKDKD 310
            +    ML+  +E+        +I+   +L++D   G+   Y L  +NPPF    + +  
Sbjct: 245 RIGSMNMLLHGVEN-------PDIRYRDSLAQD-HAGEEEKYTLLLANPPFAGSLDYENT 296

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           A +              L  +       L        L P  GGRAA+++    LF   +
Sbjct: 297 ARDL-------------LQIVKTKKTELLFLALFLRLLKP--GGRAAVIVPDGVLFG--S 339

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF 398
            +   ++RR L+E+  ++A+V LP  +F
Sbjct: 340 STAHKQLRRMLVEDQKLDAVVKLPGGVF 367


>gi|289706682|ref|ZP_06503030.1| N-6 DNA Methylase [Micrococcus luteus SK58]
 gi|289556602|gb|EFD49945.1| N-6 DNA Methylase [Micrococcus luteus SK58]
          Length = 490

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 51/254 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ L   +           +P     + DP CGT
Sbjct: 147 DLYEYLLSKLSTAGRNG--QFRTPRHIIDLMVRM----------TAPTPEDVIVDPACGT 194

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP------------HGQELEPETHAVCVAGMLIRRL 264
            GFL  A  ++ +     + P +               HG + +     +    ML+  +
Sbjct: 195 AGFLVGASEYLRE-----EHPELFFDMNQRLHFNRRMFHGYDFDSTMLRIASMNMLMHGV 249

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           ES P      ++ QG++   D   GK +   L+NPPF         +++ E  + +L R 
Sbjct: 250 ES-PDIAYRDSLAQGAS---DGDAGK-YSLILANPPFAG-------SLDAEGVSSDLQRV 297

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                 +       L        L P  GGRAA+++    LF   +     ++RR L+E+
Sbjct: 298 ------VKTKKTELLFLALFLRLLQP--GGRAAVIVPEGVLFG--SSKAHKDLRRMLVED 347

Query: 385 DLIEAIVALPTDLF 398
             ++A+V LP  +F
Sbjct: 348 HHLQAVVKLPAGVF 361


>gi|258423213|ref|ZP_05686105.1| predicted protein [Staphylococcus aureus A9635]
 gi|257846542|gb|EEV70564.1| predicted protein [Staphylococcus aureus A9635]
          Length = 625

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 97/270 (35%), Gaps = 85/270 (31%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  ++ LA  ++          +P +  T+ DP CGTGGFL  A+ HV +     K
Sbjct: 303 EFFTPDPIIELAVKMI----------NPKIDETILDPACGTGGFLVAALKHVEESIIDLK 352

Query: 236 IP-PILVP-----------HGQELEPETHAVCVAGML-----------------IRRLES 266
              PI               G +  P+   V    M+                 +R +E 
Sbjct: 353 AERPIDFEKAKTDYALRKLRGIDFNPDLVKVSKMRMILEDDGHTGIFQANSLDTLREIEI 412

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-----------------WEKDK 309
              +  + NI + S               L+NPPFG+K                 W K+ 
Sbjct: 413 QALKSGANNINENSV-----------DIILTNPPFGRKGTITDKDILRQYELGHQWVKNN 461

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           D+ E  HK          +P I     LF+      L+      G+ AIVL  S L    
Sbjct: 462 DSYENSHK-----VLDDQVPDI-----LFIERCYQFLK----NKGKMAIVLPDSVL---- 503

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            G     +R ++L+   +  +V+LP + F 
Sbjct: 504 TGPKLQYVRNYILKRFKVVGVVSLPYETFI 533


>gi|328947974|ref|YP_004365311.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
 gi|328448298|gb|AEB14014.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
          Length = 508

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/253 (19%), Positives = 98/253 (38%), Gaps = 41/253 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +M + YE+L+ +  +    G   F TPR ++ +   +            PG+  T+ DP 
Sbjct: 163 IMGDCYEYLLSKMATSGDNGQ--FRTPRHIIDMMVEI----------AKPGLTDTIIDPA 210

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLES 266
            GT GFL+++  ++ +  +          H       G + + +   +    M +  +E+
Sbjct: 211 MGTAGFLSESAKYIKEHFAKELTNKTNNQHFHNKMFTGFDTDTDMLRIGCMNMTLHGVEN 270

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    I+  ++L +D          L+NPPF      D   V K            
Sbjct: 271 PV-------IKYNNSLGEDYEEKDSHTLILANPPFSGSL--DPSTVAK------------ 309

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L +IS G+    +   +        GGR   ++    L N       +++R+ L+EN  
Sbjct: 310 SLNQISGGTKKTELLFLSLFLRLLKTGGRCVSIIPVGVL-NNTNDKAYTKLRKELVENQK 368

Query: 387 IEAIVALPTDLFF 399
           +E ++ +P  +F+
Sbjct: 369 LEGVIFMPGGVFY 381


>gi|218960818|ref|YP_001740593.1| Restriction modification system DNA specificity domain:N-6 DNA
           methylase:Type I restriction-modification system, M
           subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167729475|emb|CAO80386.1| Restriction modification system DNA specificity domain:N-6 DNA
           methylase:Type I restriction-modification system, M
           subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 837

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 117/296 (39%), Gaps = 81/296 (27%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++     L+ DP     KE      ++ DP C
Sbjct: 135 LGDAFEYLLAVLGSQGDAG--QFRTPRHIIDFMVELI-DPQ----KED-----SILDPAC 182

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET---HAVCVAGMLIRR-------- 263
           GT GFL  A  H+    S +        + +  +P T   H   +  ++I+         
Sbjct: 183 GTAGFLISAYKHIIKTNSSN--------YDKVNDPHTFAMHNTPLDELVIQNGKKYTGDL 234

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF-------------TGKRFHY---------------C 295
           L  D R  L KNI +G  ++ ++              T + F Y                
Sbjct: 235 LTPDQRAFLHKNI-KGYDIAFEMVRLSLVNMYLHGFNTPQIFEYDTLTSTERWNEYANVI 293

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF       K  +   HK     +            +LF+ ++   L       GR
Sbjct: 294 LANPPFMTP----KGGIRPHHKFTIQAK---------RSEVLFVDYMLEHL----TNNGR 336

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWI 409
           A I++    +F  ++G+   ++R+ L+E + +  +++LP  +F  +     + LWI
Sbjct: 337 AGIIVPEGIIF--QSGNAYKQLRKLLVEENYLVGVISLPAGVFNPYSGVKTSILWI 390


>gi|254669507|emb|CBA03431.1| type I restriction enzyme M protein [Neisseria meningitidis
           alpha153]
          Length = 146

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+  P+G G  AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLK--PSGKG--AIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE 416
           + I+ LP +LF+ T I   + ++     +
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQ 99


>gi|196233547|ref|ZP_03132389.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196222399|gb|EDY16927.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 363

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+++S      A   E++IRR L+E +LI  ++ LP+++F+   +   LW     
Sbjct: 18  GRAALVMANSA---SDARHSEADIRRKLIEENLIYGMLTLPSNMFYTVTLPATLWFFDRA 74

Query: 414 KTEERRGKVQLINATDLWTSI 434
           KT++R   +  I+A +++T I
Sbjct: 75  KTDDR---ILFIDARNVFTQI 92


>gi|149203431|ref|ZP_01880401.1| putative type I restriction enzyme M protein [Roseovarius sp.
           TM1035]
 gi|149143264|gb|EDM31303.1| putative type I restriction enzyme M protein [Roseovarius sp.
           TM1035]
          Length = 510

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 70/276 (25%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ L   LL          +P     + DP+ GT
Sbjct: 143 DLYEYLLSKLTTAGINGQ--FRTPRHIIKLMIELL----------APQPNEIIGDPSAGT 190

Query: 217 GGFLTDAMNHVA-DCGSHHKIPPILVP--------------------------HGQELEP 249
           GGFL + M ++  +  S   I  +  P                          HG + + 
Sbjct: 191 GGFLVETMQYLMKEHTSEEGIDEVTDPETGKTEKIYTGDLLEDHREHIRSKMFHGFDFDA 250

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------FHYCLSNPPFG 302
               +    +++  ++ DP      +I    TLS   F+ K        F   L+NPPF 
Sbjct: 251 TMLRIAAMNLMLHGVD-DP------DIHYQDTLSTS-FSDKYPQSASDGFDVILANPPFK 302

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              +      E  H         PGL +        L+ L   L +  +  GR+A ++  
Sbjct: 303 GTLD-----FEDVH---------PGLLRKVKTKKTELLFLVLILRMLKDNSGRSATIVPD 348

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             LF   + +    +RR L++++ +EA+++LP+ +F
Sbjct: 349 GVLFG--SSTAHVALRRMLIDDNQLEAVISLPSGVF 382


>gi|329963238|ref|ZP_08300975.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057]
 gi|328528934|gb|EGF55874.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057]
          Length = 484

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 135/341 (39%), Gaps = 83/341 (24%)

Query: 112 KAIFEDFDFSSTIARLEKA-------GLLYKICKNF----SGIELHPDTVPDRVMSNIYE 160
           + I +DF+F   I R+E           +YK  +N     +G   + D +   +  ++YE
Sbjct: 82  RYIIQDFEFK--INRIEIVSECVDIINSIYKETENLGSSLNGTITYYD-IDSAIFDDLYE 138

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGF 219
            ++++      E  ++   PR + +L  +L  ++  D +           YDP CG GG 
Sbjct: 139 KIMKK-----PEKFQNLYIPRHIRYLMASLTQINYSDRI-----------YDPMCGNGGL 182

Query: 220 L----------------TDAMNHVADCGSHHK------IPPILVPHGQELEPETHAVCVA 257
           L                 D ++   D  S  +      +P     +G +  P+   +   
Sbjct: 183 LLSVYERIMIKEYESQNQDVIDTDNDGFSTLRYSLMANLPSPDTLNGSDPNPQQLLLSAL 242

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              +R ++         N+Q  + +  ++   + F   ++NPPFG+K+ K     E   K
Sbjct: 243 SFQLRGIKK-------ANLQPNNFIQDNI--SEHFDVIIANPPFGQKFNKPHQINEVVIK 293

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N E+               +F+  +A+ L    +  GRA I++S   L N    S   + 
Sbjct: 294 NAEI---------------VFIDKIADTL----SPTGRATIIVSEGFLSN--TNSQHMQC 332

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           R+ L     +E +++LP+ +F  T   + + ILS  +   R
Sbjct: 333 RKKLFTQYRLEGVISLPSGIFLNTQAKSSILILSKDEHNNR 373


>gi|157143789|emb|CAL47057.1| type I restriction-modification system, M subunit [Listonella
           anguillarum serovar O2]
          Length = 152

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 22/156 (14%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTG 217
           YE L+    SE   GA  + TPR ++ +   L+   P D    +   +I    DPT GTG
Sbjct: 7   YEGLLEINASEKKSGAGQYFTPRVLIEVMVELMKPTPKDKRHNQKGDVI---VDPTAGTG 63

Query: 218 GFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GFL  A  ++           AD  S+          G EL P+T  + +  +++  L  
Sbjct: 64  GFLIAAHQYMEKNFDVTGLDEADYDSYQH----ETFFGMELVPDTRRLAMMNLMLHDLAV 119

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           D   D +  +  G TLS +     +    L+NPPFG
Sbjct: 120 D---DENSGVLYGDTLSNEGKALPKASLILANPPFG 152


>gi|291560647|emb|CBL39447.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 410

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 18/122 (14%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   + NPP+  K+  D D  E           G  +PK S     F++     L+   
Sbjct: 166 QYKNIIMNPPYSMKF-PDTDDYE---------ILGWKIPK-SKADFGFILRGVQHLK--- 211

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR   VL    LF G   + E +IRRWL+EN +I A++ +P  LF  T+I  +L ++
Sbjct: 212 -EDGRQIAVLPHGILFRG---AQEGKIRRWLIENHMISAVIGVPDKLFLNTSIPVFLLVI 267

Query: 411 SN 412
            +
Sbjct: 268 EH 269


>gi|237750520|ref|ZP_04581000.1| type I restriction-modification system M subunit [Helicobacter
           bilis ATCC 43879]
 gi|229374050|gb|EEO24441.1| type I restriction-modification system M subunit [Helicobacter
           bilis ATCC 43879]
          Length = 496

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 35/248 (14%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE  ++   S  + G  +F TPR V      +L          SP +  ++ D  C
Sbjct: 146 LCKVYESFLKTLQSAGNAG--EFYTPRAVTEFMVEML----------SPKLGESVADLAC 193

Query: 215 GTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRR 270
           GTGGFL  A + +    +  S  K+      +G E +     +C   +LI  +E+ + + 
Sbjct: 194 GTGGFLISAAHFLEKQVNLTSERKVFETSF-YGVEKKSLPFLLCATNLLINGIENPNLKH 252

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + +         +L    +F   L NPP+G     D           ++  F P   K
Sbjct: 253 GNAFDFSNFEDFDINLTKYPKFDIILMNPPYGGNERGD-----------DIKNF-PQEYK 300

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+   LF+  + ++L       G+AA+VL    LF   A + +  ++R LL +  +  I
Sbjct: 301 SSETVDLFMALILHRLSYK----GKAAVVLPDGFLFG--ADNAKINLKRKLLSDFNLYLI 354

Query: 391 VALPTDLF 398
           + LP  +F
Sbjct: 355 LRLPKSVF 362


>gi|319948098|ref|ZP_08022263.1| putative type I restriction system adenine methylase [Dietzia
           cinnamea P4]
 gi|319438232|gb|EFV93187.1| putative type I restriction system adenine methylase [Dietzia
           cinnamea P4]
          Length = 649

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 84/228 (36%), Gaps = 36/228 (15%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           PG +  +YDP CG       A+  +AD              G ++     A+      + 
Sbjct: 185 PGGV--VYDPACG----FASALIELADTSQFDDY------IGHDINDRALAIAEVRAALH 232

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R+           + +   L  D     R    ++ PPF  + + D    +         
Sbjct: 233 RV--------PLQLAEADILRTDPDPELRADVVIAEPPFAMRMDVDSRLTDPRF------ 278

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            F  G P  ++    +L H    L       GRA I+    PLF G     E  IR  +L
Sbjct: 279 -FNFGAPPPNNADTAWLQHAIAHL----TDTGRAFIITPHGPLFRG---GVEGRIRAEIL 330

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
               +E IV LP  +   T+I   LW+L  R+   +R  V  I+++D+
Sbjct: 331 RQGCVETIVGLPGGMAAYTSIPLALWVL--RRPNNKRSDVLFIDSSDV 376


>gi|256962630|ref|ZP_05566801.1| RM-CspCI [Enterococcus faecalis HIP11704]
 gi|256953126|gb|EEU69758.1| RM-CspCI [Enterococcus faecalis HIP11704]
          Length = 608

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 45/229 (19%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNH-VADCGSHHK 235
           TP  +VH    ++            G+ R   + DPTCG+G FL  AM   +ADC +  +
Sbjct: 293 TPDHIVHFMCKVV------------GINRNSVVLDPTCGSGAFLVRAMTEAMADCDTDEE 340

Query: 236 IPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKR 291
              I      G E E + + +    MLI         D + NI +GS   L  D+    +
Sbjct: 341 RERIKKEKIFGIEFEEKAYGLATTNMLI-------HGDGNSNILKGSCFDLLDDITDNNK 393

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +  L NPP+           +++H N E +  +     +       F+     K++   
Sbjct: 394 INRILMNPPYN---------AQRKHCNPEYVKTWKSNTKQDPSKGFHFVYETVKKVK--- 441

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESE-IRRWLLENDLIEAIVALPTDLF 398
              G+ A++L   P+      S E +  ++ +LE   ++A+ +LP D+F
Sbjct: 442 --EGKLAVLL---PMQCAIGNSSEVKYFKKKMLEEHSLDAVFSLPIDMF 485


>gi|72161753|ref|YP_289410.1| type I restriction system adenine methylase [Thermobifida fusca YX]
 gi|71915485|gb|AAZ55387.1| putative type I restriction system adenine methylase [Thermobifida
           fusca YX]
          Length = 558

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 37/224 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +++DP CG G  L          G+     P     GQ+++P  HA  +A     +L ++
Sbjct: 176 SVFDPACGLGSLLLA-------VGA-----PDAQRTGQDIDP--HAARLA-----QLRAE 216

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP 326
                +  ++ G +L  D +   R    + +PP     W +++  ++         R+  
Sbjct: 217 LEYSTTAEVRVGDSLRADAWPDHRVELVVCDPPTSNADWGREELLLDT--------RWEL 268

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP  ++  + +L H A     P   GGRA +V+S+S  +  R G     IR  ++   L
Sbjct: 269 GLPPRAEAELAWLQH-AYAHTAP---GGRAIVVMSTSAAYR-RTGR---RIRSEMVRRGL 320

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATD 429
           +  ++ALP  L    +   +LW+L    +E +   +V++++ +D
Sbjct: 321 LTDVIALPAGLASAHSQPVHLWVLRRPTSESDAATEVRMVDMSD 364


>gi|290509518|ref|ZP_06548889.1| N-6 DNA methylase [Klebsiella sp. 1_1_55]
 gi|289778912|gb|EFD86909.1| N-6 DNA methylase [Klebsiella sp. 1_1_55]
          Length = 1304

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 45/268 (16%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCGS 232
           F  P    +L T ++          SP     +YDP  G+GGFL  A   V     D G 
Sbjct: 147 FTAPDVTTYLVTEIM----------SPEAGEKVYDPCSGSGGFLLSAFEKVRRSRPDTGI 196

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +   G E   +     +  +++    +     ++K   +G+  S+D     ++
Sbjct: 197 SDGGTSFI---GCEARADVFLYGITRLILA--GATNIHLMTKLPSEGTHTSRD-----KY 246

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++ P  G K+      +  E    E       L   +D +  F+ H+ + L+     
Sbjct: 247 DVVMTTPVTGAKY------ISSEASKNEF------LFPDTDSTGQFIQHVFSSLKTE--- 291

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRAAIV+    LF G A   + E+R++LL+   +EA+VALP    FR +      ++  
Sbjct: 292 -GRAAIVVPDGFLFRGGA---DRELRQYLLKEGAVEAVVALPAGTLFRHSTLRGNLLILR 347

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKK 440
           +   +R   +++++A+ L+   R+ G K
Sbjct: 348 KNRVKRTESIRMVDASLLFE--RSPGSK 373


>gi|304312534|ref|YP_003812132.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301798267|emb|CBL46489.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 693

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 106/293 (36%), Gaps = 75/293 (25%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
           + TPR VV L   +L DP +           TL DPTCGTGGFL   + H+         
Sbjct: 322 YFTPRGVVKLVIEML-DPKEH---------ETLLDPTCGTGGFLVATLGHMLKRFRQEQD 371

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G+      + V    E   E  A  V G      + DP   L +  Q    L+ D  
Sbjct: 372 TQAGNESTTEFLNV---HERLKEYAAANVYGA-----DFDPF--LIRAAQMNMVLAGD-- 419

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG------RFGPGLPKISDGSMLFLMH 341
            G+   Y +++  F      D D+ +KE   G L        FG  +P I+D  +L    
Sbjct: 420 -GRGHIYNINSLEFPLGHLADLDSAKKEIPLGSLDIIATNPPFGSDIP-ITDKHILEQYE 477

Query: 342 LANKLELPPNGG-----------------------------GRAAIVLSSSPLFNGRAGS 372
           LA+  E    GG                             GR  IVL    L N  A  
Sbjct: 478 LAHHWESDGEGGFRNTGSLKGSVAPEILFIERCIKWLKAGTGRMGIVLPDGVLGNPAA-- 535

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEERRGKV 422
               IR W++    + A V LP + F      NI T L  L  +  EE+R + 
Sbjct: 536 --EYIRWWIMRETQVLASVDLPVEAFIAEANVNILTSLLFLRRKSEEEKRAEA 586


>gi|146319439|ref|YP_001199151.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
 gi|145690245|gb|ABP90751.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
          Length = 300

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 113/288 (39%), Gaps = 49/288 (17%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL-----------ECALEPTRSAVREK 58
           ++ N IW  A +L G+   +++   IL F   R L           E         V++ 
Sbjct: 7   AITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPGETVQDA 66

Query: 59  YL--AFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDNA- 111
           Y   A G   ++ LE+     GY+      ++       N+    ++ ++    F+ N  
Sbjct: 67  YAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDHFNANVE 126

Query: 112 ---------KAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    + +F D +       +ST+ R   A  L  I K    IE   D   D ++ 
Sbjct: 127 LNRDAMEDFRGVFNDINLGDSRLGNSTVVR---AKSLNSIVKLIDSIEYKNDEGKD-ILG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            IYE+LI +F +   +   +F TP  V     + +LD    L  E      ++YDPT G+
Sbjct: 183 EIYEYLIGQFAASAGKKGGEFYTPHQV-----SKILDKIVTLGLEKSDTSFSVYDPTMGS 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           G  L    N +   G H K       +GQE+   T+ +    +++ ++
Sbjct: 238 GSLLLTVRNELPQ-GQHIKF------YGQEMNTTTYNLARMNLMMHQV 278


>gi|291448530|ref|ZP_06587920.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291351477|gb|EFE78381.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 696

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 143/393 (36%), Gaps = 78/393 (19%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGL 132
           +V+  S +      L  +   N R  + + +    ++ K  ++D F  +  I   ++A  
Sbjct: 227 RVSNGSVHGRFRTGLKEMFDANGRAAISTRVKGLFEDVKTEYKDVFKPTDEITLSDRA-- 284

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  I    +  +L    V  + ++  Y+ L+   G+ +      + TPR  V+L   +L 
Sbjct: 285 LSFIVSELAPYDLIGTDVDAKGIA--YQELV---GTNLRGDRGQYFTPRGAVNLMVEIL- 338

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------ 234
                     P    T+ DPTCGTGGFL   + H+     HH                  
Sbjct: 339 ---------DPKEDETVLDPTCGTGGFLQATLKHL-----HHTWKKEAGTLGFPDTEEER 384

Query: 235 -----KIPPILVPH--GQELEP-ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                K+      H  G + +P    A  +A M + +   +     S    QG  LS   
Sbjct: 385 ERYGDKLKEFADEHLFGSDFDPFLVRATTMAIMTLAQTTGNVFHMDSLAFPQGH-LSGVE 443

Query: 287 FTGKRF-------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG------------PG 327
              KR           L+NPPFG       ++V    +NG    +G              
Sbjct: 444 AAKKRIPLDKPTVDVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTS 503

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P       LF+      ++     GGR  IVL +  L N   G  +  IRR++L N  +
Sbjct: 504 VPSSMAPEQLFIQRAIEWVK----PGGRIGIVLPNGILSN--PGPTDEAIRRYILRNCWV 557

Query: 388 EAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
            A V LP + F      NI T L  L  +  +E
Sbjct: 558 LASVELPVETFVVDANVNILTTLLFLKRKTRQE 590


>gi|260580903|ref|ZP_05848727.1| LOW QUALITY PROTEIN: type I restriction-modification system, M
           subunit [Haemophilus influenzae RdAW]
 gi|260092392|gb|EEW76331.1| LOW QUALITY PROTEIN: type I restriction-modification system, M
           subunit [Haemophilus influenzae RdAW]
          Length = 305

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 95/252 (37%), Gaps = 38/252 (15%)

Query: 112 KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
           K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE+LI 
Sbjct: 58  KGLFADFDTTSN--RLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHID-LFGDAYEYLIS 114

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L  A 
Sbjct: 115 NYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLLLQAK 166

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                    H I       GQE+   T+ +    M +  +  D       +I  G+TL +
Sbjct: 167 KQF----DEHIIEEGFF--GQEINHTTYNLARMNMFLHNINYDKF-----DIALGNTLME 215

Query: 285 DLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---GLPKISDGSMLFLM 340
             F   K F   +SNPP+  KW    D      +     RF P      KI  G  L+  
Sbjct: 216 PQFGDNKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPRRRACTKIQSGLCLYFT 270

Query: 341 HLANKLELPPNG 352
            +       P G
Sbjct: 271 CVKLSFSKRPRG 282


>gi|253827884|ref|ZP_04870769.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|253511290|gb|EES89949.1| putative methylase [Helicobacter canadensis MIT 98-5491]
          Length = 542

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +R++L E  L+E +V  P ++F        L ILS ++ +    KV  I+A   +     
Sbjct: 260 LRKFLKEKRLLEGVVEFPRNIFPHQVEEFSLLILSKQENK----KVFFIDAQKFYLK--- 312

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           EGK  R+ N D+   I D Y+S+++   SR++DYR       K     +   I D   L 
Sbjct: 313 EGKYNRLTNIDR---IYDEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLG 369

Query: 497 R-LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
             LE     +++        +D     ++    YG++E F++ S KS++ +  K++
Sbjct: 370 EFLECVYRGQRVESKKDEVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLR 425


>gi|323439267|gb|EGA96993.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 172

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 10/108 (9%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T   IL  
Sbjct: 2   GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPT--CILVF 56

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +K  ++   V  I+A++ +     +GK +  ++D Q  +I++ Y  +E
Sbjct: 57  KKCRQQDDNVLFIDASNNF----EKGKNQNHLSDTQVERIINTYKGKE 100


>gi|256810495|ref|YP_003127864.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793695|gb|ACV24364.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 1068

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 166/424 (39%), Gaps = 60/424 (14%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG 131
           F K+         EY    +GS  +  ++   I    ++AK   + + F+  I +LE   
Sbjct: 221 FCKIWDEKTTRKGEYYRFQIGSNESAKDVFDRIKKIYEDAKKK-DPYVFAEDI-KLEPE- 277

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE-DFMTPRDVVHLATAL 190
           ++Y + +    I L    +  + ++        RF  +  +G    + TPR++++     
Sbjct: 278 IVYSVVEQLQEINLKDTDLDTKGVA------FERFMEDFFKGKMGQYFTPREIINFMVEF 331

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPH----- 243
            +      F E   +   + DP CG+GGFL   ++ +     G++ K       H     
Sbjct: 332 AM----LHFDEDEYLNLKVLDPACGSGGFLLHVLDFIRRWAEGNYDKFEAYQHWHEFAKN 387

Query: 244 ---GQELEPETHAVCVAGMLIRRLESDPRR-----DLSKNIQQGSTLSKDLFTGKRFHYC 295
              G E+  +   VC   M+   L  D        D  ++ ++   + KD   G  F   
Sbjct: 388 NIYGIEINEQISRVCKMNMI---LHDDGHTNIISFDALEDFEKIEKIHKDFKKGS-FDLI 443

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K +K +    K  +N ELG+ G    K     +LF+      L+     GG 
Sbjct: 444 LTNPPFGAKIKKSE---RKYIENYELGK-GRTSQKT---EILFIERCWEFLK----EGGI 492

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNR 413
             IVL    L N    S    +R ++L    + A+++LP   F  +   + + L  L  +
Sbjct: 493 LGIVLPDGILTN----STLQYVRDFILNRFRVLAVISLPNFAFTHYGAGVKSSLVFLQKK 548

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENGKFSRMLD 469
           K  E  G   +  A          G+K      D++  + DI  +     + GK  + L+
Sbjct: 549 KEGEDLGNYPIFMAIAEHIGYDATGRK------DEKNDLPDILEAYKEFLKTGKLKKNLN 602

Query: 470 YRTF 473
           +  F
Sbjct: 603 FEGF 606


>gi|254503222|ref|ZP_05115373.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222439293|gb|EEE45972.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 511

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 66/285 (23%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            LL K+    S I +      DR    ++YE+++ +  S    G   F TPR ++ L   
Sbjct: 128 ALLAKVVDLLSEIPME-----DRDTKGDLYEYMLAKIASAGQNG--QFRTPRHIIQLMVE 180

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------- 240
           L            P    T+ DP  GT GFL  A  ++ +     K P +          
Sbjct: 181 L----------TRPTPKDTICDPAAGTAGFLVAAGEYLRE-----KNPELFRDEDLRKHF 225

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC-- 295
              + HG + +     +    M +  +E         +I+   +L++D   G    Y   
Sbjct: 226 HEGMFHGYDFDATMLRIGSMNMQLHGIE-------GGDIRYKDSLAED-HAGDTDAYSLI 277

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELPPNGG 353
           L+NPPF    + +  A +              L KI  +  + L  M L  KL  P   G
Sbjct: 278 LANPPFAGSLDYETTAKD--------------LLKIVKTKKTELLFMALFLKLLKP---G 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           GRAA+++    LF   +     E+RR L+E+  ++ I+ LP+ +F
Sbjct: 321 GRAAVIVPDGVLFG--SSKAHKELRRMLVEDHKLDGIIKLPSGVF 363


>gi|325957310|ref|YP_004292722.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus acidophilus 30SC]
 gi|325333875|gb|ADZ07783.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus acidophilus 30SC]
          Length = 492

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 121/291 (41%), Gaps = 59/291 (20%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K G+L +   N        D     +  +IYE +++   S  S G  +F TPR +     
Sbjct: 123 KNGVLLRQVVNVVNEVDFTDPKDRHLFGDIYESILKELQSAGSSG--EFYTPRALTDFIA 180

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN-------HVADCGSHHKIPPILV 241
             L           P + + + D  CGTGGFL  A+N        V D   ++K      
Sbjct: 181 ETL----------KPKLGQRIADLACGTGGFLVSALNILSKQVHSVEDRELYNK-----A 225

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGK-RFHYCLSN 298
             G E + + + + V  +L+  ++       + +I  G++L K +  +T K +F   + N
Sbjct: 226 VFGIEKKGQPYILAVTNLLLHDVD-------NPDIVHGNSLEKRVTEYTDKDKFDLIMMN 278

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGR 355
           PPFG                 EL       P   + S+ + LFL  +  +++      G+
Sbjct: 279 PPFG---------------GSELPIIKQNFPTDLQSSETADLFLALIMYRIK----DNGK 319

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
             ++L    LF G  G+ +  I++ +L++  +  I+ LP  +F   T+IAT
Sbjct: 320 VGVILPDGFLF-GNDGA-KLNIKKRMLKDFNLHTIIRLPGSIFSPYTSIAT 368


>gi|239945070|ref|ZP_04697007.1| type I restriction-modification system, M subunit, putative
           [Streptomyces roseosporus NRRL 15998]
 gi|239991532|ref|ZP_04712196.1| type I restriction-modification system, M subunit, putative
           [Streptomyces roseosporus NRRL 11379]
          Length = 718

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 143/393 (36%), Gaps = 78/393 (19%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGL 132
           +V+  S +      L  +   N R  + + +    ++ K  ++D F  +  I   ++A  
Sbjct: 249 RVSNGSVHGRFRTGLKEMFDANGRAAISTRVKGLFEDVKTEYKDVFKPTDEITLSDRA-- 306

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  I    +  +L    V  + ++  Y+ L+   G+ +      + TPR  V+L   +L 
Sbjct: 307 LSFIVSELAPYDLIGTDVDAKGIA--YQELV---GTNLRGDRGQYFTPRGAVNLMVEIL- 360

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------ 234
                     P    T+ DPTCGTGGFL   + H+     HH                  
Sbjct: 361 ---------DPKEDETVLDPTCGTGGFLQATLKHL-----HHTWKKEAGTLGFPDTEEER 406

Query: 235 -----KIPPILVPH--GQELEP-ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                K+      H  G + +P    A  +A M + +   +     S    QG  LS   
Sbjct: 407 ERYGDKLKEFADEHLFGSDFDPFLVRATTMAIMTLAQTTGNVFHMDSLAFPQGH-LSGVE 465

Query: 287 FTGKRF-------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG------------PG 327
              KR           L+NPPFG       ++V    +NG    +G              
Sbjct: 466 AAKKRIPLDKPTVDVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTS 525

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P       LF+      ++     GGR  IVL +  L N   G  +  IRR++L N  +
Sbjct: 526 VPSSMAPEQLFIQRAIEWVK----PGGRIGIVLPNGILSN--PGPTDEAIRRYILRNCWV 579

Query: 388 EAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
            A V LP + F      NI T L  L  +  +E
Sbjct: 580 LASVELPVETFVVDANVNILTTLLFLKRKTRQE 612


>gi|300689755|ref|YP_003750750.1| typeI restriction enzyme (hsdM) [Ralstonia solanacearum PSI07]
 gi|299076815|emb|CBJ49425.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           PSI07]
          Length = 481

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 107/280 (38%), Gaps = 58/280 (20%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ +    I LH   V       +YE L+ R    ++     F TPR +V     L 
Sbjct: 125 LLARVVQLLDAIPLHRRDV----KGAVYESLLGRIA--LAAQGRPFHTPRHIVRFMVELT 178

Query: 192 L-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPP 238
             DP D           TL DP  GTGGFL  A  ++                 HH +  
Sbjct: 179 RPDPSD-----------TLCDPAAGTGGFLAAAGEYLRREHPGLLHDARQSAHFHHGM-- 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               HG E++     +    +L+  +E    RD        +  ++       +   L++
Sbjct: 226 ---FHGYEIDRAMLRIGSMNLLLHGVEGADLRDCD------ALAARHADEAGAYSLILTH 276

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF          V+    + +L R    L +     +LFL    + L      GGRAA+
Sbjct: 277 PPFTGD-------VDHGSADPDLLR----LVRTRKAELLFLARCLHLLR----PGGRAAV 321

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++    LF   +G     +RR L+E+  +E ++ LP  +F
Sbjct: 322 IVPDGVLFG--SGIARGTLRRMLVEDHKLEGVIKLPGGVF 359


>gi|260642159|ref|ZP_05859273.1| putative type I restriction-modification system, M subunit
           [Bacteroides finegoldii DSM 17565]
 gi|260623398|gb|EEX46269.1| putative type I restriction-modification system, M subunit
           [Bacteroides finegoldii DSM 17565]
          Length = 368

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 112/315 (35%), Gaps = 96/315 (30%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++    + + + A  F TPR+++     +L DPD           R L DP CG+GG
Sbjct: 6   YETIV---SNTLKQEAGQFFTPRNIIKCMVEML-DPDQN--------TRVL-DPACGSGG 52

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELE-------PETHAVC--VAGMLIRRLESDPR 269
           FL   ++HV      HKI   L P   E+        PE   +    A  +I   + DP 
Sbjct: 53  FLVTVLDHV-----RHKITRNLYPELDEVRLAARVNTPEVDELVRNYAEKMIFGFDFDP- 106

Query: 270 RDLSKNIQQGSTLSKDLFTG---------------------------------------- 289
            DL K  +    ++ D  +                                         
Sbjct: 107 -DLKKAARMNMVMAGDGHSNIFNINSLDYPQGDKPDRSLIAEAVNESIKHSNDKDFPFGT 165

Query: 290 ------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +F    +NPPFG K E D +   +   N          P+I     LF+    
Sbjct: 166 SEDNAQGKFDMIFTNPPFGAKVEVDVEIARRYKLNS-------NAPEI-----LFIEACY 213

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTN 402
           N L+     GG+  IVL    L N    S    +R+W+L +  + A V LP + F  +  
Sbjct: 214 NFLK----PGGKMGIVLPDGILGNPNTES----VRKWILGHFKLLASVDLPVETFLPQVG 265

Query: 403 IATYLWILSNRKTEE 417
           +   L  L  +  EE
Sbjct: 266 VQASLLFLQKKTAEE 280


>gi|308179092|ref|YP_003918498.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307746555|emb|CBT77527.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 506

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 46/251 (18%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  + G   F TPR ++ L  A+           +P  +  + DP  GT
Sbjct: 155 DLYEYMLSKIATAGTNGQ--FRTPRHIIELLVAM----------RNPQPMEAICDPASGT 202

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  +  ++ D        P           HG + +     +    +L+  +E+   
Sbjct: 203 CGFLMASGEYLRDNNPELMFDPEQRAFFNNQQFHGFDFDSTMLRIGAMNLLLHGIEN--- 259

Query: 270 RDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 I+   +L+ DL +   +++   L+NPPF         +++ E+ + EL      
Sbjct: 260 ----PVIENRDSLA-DLHSADEEKYDVILANPPFAG-------SLDSENVSKEL------ 301

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L  +       L        L P  GGRAA+++    LF   +     ++R+ L+E+  +
Sbjct: 302 LKTVKTKKTELLFLALFLRLLKP--GGRAAVIVPDGVLFG--SSKAHKDLRKQLVEDQQL 357

Query: 388 EAIVALPTDLF 398
           EA+V LP+ +F
Sbjct: 358 EAVVKLPSGVF 368


>gi|307268426|ref|ZP_07549804.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|306515233|gb|EFM83770.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 284

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 18/128 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE LI +F SE  + A +F TP  V  +   ++     AL +E   +  +++DPT
Sbjct: 173 VIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARIV-----ALGQEDKKLF-SVFDPT 226

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T  +    +++  +E++      
Sbjct: 227 MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM---- 275

Query: 274 KNIQQGST 281
            N++ G T
Sbjct: 276 -NLRNGDT 282


>gi|281418675|ref|ZP_06249694.1| N-6 DNA methylase [Clostridium thermocellum JW20]
 gi|281407759|gb|EFB38018.1| N-6 DNA methylase [Clostridium thermocellum JW20]
          Length = 410

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 110/304 (36%), Gaps = 67/304 (22%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F + I R+  +  + ++ K    +EL  +     VM   YE ++++ G +   G   + T
Sbjct: 128 FKNHIWRIRYSPTIKELIKRLKDLELEQNF---DVMGRAYEFVVQKLGEQKQYG--QYFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR ++H    L            P +   +YDP  GTGGF+  A   V     +      
Sbjct: 183 PRHIIHFMVEL----------ADPEIGEKIYDPAAGTGGFILRAFEVVKSKIDN------ 226

Query: 240 LVPHGQELEPETHAVC-----VAGMLIRRLESDP--------------------RRDLSK 274
           LV  G  +   T A        A ML R+L+ +                       D   
Sbjct: 227 LVKAGMRVNESTAAYNGVQFDEAEMLYRKLKEESLYAVEKAPDVYKLALMNMILHNDGKS 286

Query: 275 NIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           N+ +  +L     L   +++   L+NPP+G   +      E   K  E            
Sbjct: 287 NLFEADSLDNRAQLEHKEKYDVVLTNPPYGPLAQSRVGTFEFHAKRYE------------ 334

Query: 333 DGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
               LF+ H+   L    P     RA +++    LF+    S    IR  LL    ++A+
Sbjct: 335 ---ALFIQHIMAALRPSEPAKKHSRAVVIILDKILFDN--SSVFKNIRMKLLREFDLKAV 389

Query: 391 VALP 394
            ++P
Sbjct: 390 FSMP 393


>gi|30250416|ref|NP_842486.1| hsdM; type I restriction modification enzyme methylase subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30181211|emb|CAD86409.1| hsdM; type I restriction modification enzyme methylase subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 553

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 109/273 (39%), Gaps = 68/273 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    +    G   F TPR ++ L   L+           P +   + DP 
Sbjct: 171 IQGDVYEMLLAEIATAGKNG--QFRTPRHIIKLMAELV----------QPQLGHKIADPA 218

Query: 214 CGTGGFLTDAMNHVA-----DCGSHHKIP-------------------PILVPH--GQEL 247
           CGTGGFL  A  ++      + G+    P                    IL     G ++
Sbjct: 219 CGTGGFLLGAYQYIVTQLAINAGTQTLTPDEDGFTRTSVAAAFDEKRQAILASSLWGYDI 278

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  +++  +E         +I    TLSK       +   L+NPPF      
Sbjct: 279 DQTMVRLGLMNLMMHGIE-------EPHIDYKDTLSKSYTEEAEYDIVLANPPF------ 325

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
              +++K   N  L          +   +LF+ ++   L+     GG A +++    LF 
Sbjct: 326 -TGSIDKGDINENLQL------STTKTELLFVENIYRLLK----KGGTACVIVPQGVLF- 373

Query: 368 GRAGSGES--EIRRWLLENDLIEAIVALPTDLF 398
              GSG++  ++R+ L+E+  ++A++ LP+ +F
Sbjct: 374 ---GSGKAFKDLRQTLVEHCDLKAVITLPSGVF 403


>gi|5712712|gb|AAD47620.1| truncated HsdM [Lactococcus lactis]
          Length = 206

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 23/152 (15%)

Query: 288 TGKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           T + F   ++NPP+   W   +++ D   +E+          G+   +     FL+H   
Sbjct: 35  TPRMFDAVMANPPYSAHWNNKDREDDPRFREY----------GIAPKTKADYSFLLHCLY 84

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
             +      GR AI+L    LF G A   E  IR+ L++   IEA++  P  LF  T I 
Sbjct: 85  HTK----ESGRVAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTGIP 137

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
             + IL   K       +  ++A+  +  ++N
Sbjct: 138 VCVLIL---KKNRANSDILFVDASQGFEKMKN 166


>gi|169830730|ref|YP_001716712.1| hypothetical protein Daud_0539 [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637574|gb|ACA59080.1| hypothetical protein Daud_0539 [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 148

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
          FIW  A+ L G ++   +  V+LP T+LRRL+C LEPT+  V EK      S +
Sbjct: 15 FIWSVADLLRGPYRPNQYKDVLLPMTVLRRLDCVLEPTKDQVLEKIKTLQESKV 68


>gi|119513482|ref|ZP_01632506.1| putative type I restriction-modification system,
          methyltransferase subunit [Nodularia spumigena CCY9414]
 gi|119461862|gb|EAW42875.1| putative type I restriction-modification system,
          methyltransferase subunit [Nodularia spumigena CCY9414]
          Length = 108

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 11 LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN--- 66
          + +FIW  A+D   D +    +  VILP  +LRRL+C LE T++ V E+ + F       
Sbjct: 9  IVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLESTKADVLEE-VRFQREEAKF 67

Query: 67 --IDLESFVKVAGYSFYNTSEYSLSTL 91
            +D     + +GY FYN SE++L  L
Sbjct: 68 EVLDPSGLQEASGYVFYNVSEWTLKKL 94


>gi|83648373|ref|YP_436808.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83636416|gb|ABC32383.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 250

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 29/249 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S    +W  A+ L G  + +++  V+L    L+ +    E  R  + E+    GG  +D+
Sbjct: 16  SFEQTLWDTADKLRGSVESSEYKHVVLSLIFLKFISDKFEERRKELIEE--GHGGY-VDM 72

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAI---FEDFDFSS 122
             F  +    FY   E     +     ++++    ++ + +   N K++     D  FS 
Sbjct: 73  VDFYTMKNV-FYLPEESRWEFISKNAKQDDIAVKIDTALHTVEKNNKSLRGALPDNYFSR 131

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               + K   L     N   +E +   V  RV    YE+ + +F +   +G  +F TP+ 
Sbjct: 132 LGLDVSKLAALIDSINNIDTVEDNETDVVGRV----YEYFLGKFAATEGKGGGEFYTPKC 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L  A +++P              +YDP CG+GG    ++  V +   + K   I   
Sbjct: 188 VVKL-IAEMIEPYHG----------KIYDPCCGSGGMFVQSVKFVENHRGNKKDISI--- 233

Query: 243 HGQELEPET 251
           +GQE    T
Sbjct: 234 YGQEQTSTT 242


>gi|239833255|ref|ZP_04681583.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821318|gb|EEQ92887.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 865

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 64/273 (23%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+   GS+   G   F TPR ++     ++          +P     + DP C
Sbjct: 135 LGDAFEYLLSVLGSQGDAG--QFRTPRHIIDFMVEII----------NPQKNEVIMDPAC 182

Query: 215 GTGGFLTDAMNHV-----------------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           GT GFL  A  H+                  D        P+  P G  L+P+  A    
Sbjct: 183 GTAGFLISAYKHILKQNSTGVVNSNGASTEGDAAEQALESPMRYP-GDLLQPDDRARLAR 241

Query: 258 GMLIRRLESDPRRDLSKN----------IQQGSTLSKDLFTGKRFHYCLSNPPF--GKKW 305
            +    +  D  R    N          +++  TL+ +    +     L+NPPF   K  
Sbjct: 242 NIRGYDISPDMVRLSLVNLYLHGFADPKVEEYDTLTSEDKWTETADVILANPPFMSPKGG 301

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            K     + + K  E+               LF+ ++A  L   PN  GRAAIV+    +
Sbjct: 302 IKPHTRFQVQSKRSEV---------------LFVDYIAEHLT--PN--GRAAIVVPEGII 342

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           F  +  S    +R+ L+EN L  A+++LP  +F
Sbjct: 343 FQSQ--SAYVALRKMLVENHL-AAVISLPAGVF 372


>gi|91206234|ref|YP_538589.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|157827849|ref|YP_001496913.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|91069778|gb|ABE05500.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|157803153|gb|ABV79876.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 517

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 108/261 (41%), Gaps = 46/261 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  N +E+ + +  S      E + TP++++ L T   +DP    F E      T+YDP 
Sbjct: 257 IKDNAFEYFLEKTRSTCDYLGE-YFTPKNIIKL-TINYVDPK---FGE------TVYDPF 305

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-----IRRLESDP 268
           CG+GGFLT+A  ++ +          ++   ++L+   H       +     I ++    
Sbjct: 306 CGSGGFLTEAFKYIKENN--------IINTDEDLKRLRHNTLYGREITTTARIAKMNMIL 357

Query: 269 RRDLSKNIQQGSTLSKDLFT------GKRFHYCLSNPPFG----KKWEKDKDAVEKEHKN 318
             D    IQQ ++L    +         +F   ++N PF     KK  K+   V + H  
Sbjct: 358 HGDGHSGIQQINSLENSKYIRPTTNQTLKFDIIVTNMPFSQEITKKTIKNGKTVTENHI- 416

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                +  G+ K ++G    + H    L      GGR A+V+    LF     +    +R
Sbjct: 417 --AHLYYNGIAK-NNGDAACVFHCLQNLR----EGGRMALVVPERFLFRRDTAA----VR 465

Query: 379 RWLLENDLIEAIVALPTDLFF 399
           ++LL    ++ +++LP   F 
Sbjct: 466 QFLLSKAKLQTVISLPQGTFL 486


>gi|225022499|ref|ZP_03711691.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944738|gb|EEG25947.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 500

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 103/250 (41%), Gaps = 35/250 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+++ +  +  + G   F TP+ ++ L   L+          +P +   + DP 
Sbjct: 115 ITGDLYEYMLSKLATSGTNGQ--FRTPQHIIDLLVELM----------APKLGERIIDPA 162

Query: 214 CGTGGFLTDAM-----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGT GFL +A       +  D  + ++            + +   V +A M    +    
Sbjct: 163 CGTAGFLINASEWMKRTYREDLYNTNERERFYRDTFTGYDFDRSMVRIAAM-NSYMHGFE 221

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           + ++S     G         G  +   L+NPPF    + +              R  P +
Sbjct: 222 KPNISYRDSLGEFPEMSGGGGDLYDVILANPPFSGSLDAE--------------RVDPVI 267

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K+++     L+ LA  L L    GGRAA+++    LF   +      +R+ L+EN  ++
Sbjct: 268 RKLANTKKTELLFLARFLTLL-KVGGRAAVIVPEGVLFG--STKAHKVLRKELVENQKLD 324

Query: 389 AIVALPTDLF 398
           A++ LP+ +F
Sbjct: 325 AVIKLPSGVF 334


>gi|313892186|ref|ZP_07825779.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E]
 gi|313119324|gb|EFR42523.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E]
          Length = 594

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 59/303 (19%)

Query: 179 TPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           TP  +V L   +L ++P D +            D   G G F+T A         + K  
Sbjct: 122 TPDTLVDLVIKILNINPGDKVC-----------DICGGIGNFITKAYLKEKKAIYYSK-- 168

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------ 291
                     E  T A+ V  + +  L  D   D  KNI   +    DLF   R      
Sbjct: 169 ----------EINTQAISVMEIRVDVLLHD---DKEKNIYTEAGNIFDLFFNDRVKNDKF 215

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF----GPGLPKISDGSMLFLMHLANKLE 347
           F     N P+  +   DK +V    KN +  ++     PG+ K +    LF + + + L+
Sbjct: 216 FDKIFGNYPW--RIFIDKYSV----KNIDFLKYIDSKVPGILKRNMSDWLFNILMIHMLK 269

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+A  ++++  ++N  +    +  R++ L N LIEAI+ALP +LF  T+I T L
Sbjct: 270 ----DTGKAVGIMTNGSIWNQMSDCKNA--RKYFLSNGLIEAIIALPANLFKSTSIPTVL 323

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
            + S+        K+++I+A    TSI  E  +++I + +    I   Y+   EN  F  
Sbjct: 324 IVFSH-----GNKKIKMIDA----TSICVENMRQKIFSTENIETIYKAYLEETENSIFVN 374

Query: 467 MLD 469
           + D
Sbjct: 375 VED 377


>gi|228288746|ref|YP_002841998.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51]
 gi|228014316|gb|ACP50076.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51]
          Length = 521

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 112/287 (39%), Gaps = 66/287 (22%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+ + G + + G   F TPR++V     ++ DP       +PG +  + DP  GTGG
Sbjct: 166 YEFLMYKLGQQGNYGQ--FFTPRNIVSFMVRII-DP-------NPGEV--ILDPAAGTGG 213

Query: 219 FLTDAMNHVA---------DCGSHHKIPPILVP-HGQELEPETHAVCVAGMLIRRLESDP 268
           FL  A  +V          +     KI  +    +G E  P+   +   G++  RL  D 
Sbjct: 214 FLVKAFEYVKQKIERQITNEADKEIKIRELKHNLYGIEKAPDVFKL---GLMNLRLHGDG 270

Query: 269 RRD------LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-L 321
             +      LS ++Q       D+ T        +NPPFG               +GE  
Sbjct: 271 SSNFENLDALSGSVQGAYKEKADVIT--------TNPPFGP-------------FSGEPT 309

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G F     +     +  +M +          GGR A V+    LFN         IRR L
Sbjct: 310 GNFKYKFKRFETYFIQAIMDMVKP-------GGRVATVMLEGLLFN----ENYEGIRRDL 358

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNR--KTEERRGKVQLIN 426
           ++   IEA+ +LP  +F   + A    ++  R  K E+   KV   N
Sbjct: 359 VDKFKIEAVFSLPAGVFLPYSAAKTDILVFRRPNKGEKTTDKVLFFN 405


>gi|114568715|ref|YP_755395.1| N-6 DNA methylase [Maricaulis maris MCS10]
 gi|114339177|gb|ABI64457.1| N-6 DNA methylase [Maricaulis maris MCS10]
          Length = 508

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 67/274 (24%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ L   +L           P     + DP+CGT
Sbjct: 142 DLYEYLLSKLTTAGINGQ--FRTPRHIIKLMVDML----------EPKPTDRISDPSCGT 189

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET--------------HAVCVAGMLIR 262
           GGFL + M ++      +  P  ++   +E +PET              H   + G +  
Sbjct: 190 GGFLVNVMEYLLRA---YTSPEAVI---KETDPETGKTETLYPGDQLEGHWDHIKGDMFH 243

Query: 263 RLESDPR--RDLSKN----------IQQGSTLS---KDLFTG---KRFHYCLSNPPFGKK 304
             + D    R  + N          I    TLS    D F     + F   L+NPPF   
Sbjct: 244 GFDFDASMLRIAAMNLMLHGVDNPDIHYQDTLSGSFTDNFQASATEGFDVILANPPF--- 300

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K +++ E  +  L        K     +LFL+ +   L+     GGR+A ++    
Sbjct: 301 ----KGSLDYEDVHPNL----LSAVKTKKTELLFLVLILRMLK----PGGRSATIVPDGV 348

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           LF   + +  + +R+ L++ + +EA+++LP+ +F
Sbjct: 349 LFG--SSTAHTALRKKLIDQNQLEAVISLPSGVF 380


>gi|332559082|ref|ZP_08413404.1| putative restriction endonuclease, N6_Mtase domain protein
           [Rhodobacter sphaeroides WS8N]
 gi|332276794|gb|EGJ22109.1| putative restriction endonuclease, N6_Mtase domain protein
           [Rhodobacter sphaeroides WS8N]
          Length = 876

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 173/450 (38%), Gaps = 94/450 (20%)

Query: 135 KICKNFSGIELHPDTVPD--RVMSNIY---------EHLIRRFGSEVSEGAE--DFMTPR 181
           +I +  + I LHP T+ +  R +  +Y           L   F S    G +   F TPR
Sbjct: 276 RIFREGARINLHPGTIKEVVRKLQGVYLFGIDADLNGRLFETFLSATMRGKDLGQFFTPR 335

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  L  ALL DP     +     +  + D  CGTGGFL + +   +D  +     P+L 
Sbjct: 336 SVAKLG-ALLADP-----QVDRARMEFVLDGCCGTGGFLIEVL---SDMWAKINANPVL- 385

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ--------GSTLSKDLFTGKRF- 292
               E E       VA   I  ++S    +L++  +         GS++ +  F  K   
Sbjct: 386 ---SETEKANLRRRVAETAIYGIDSAQEPNLARLARMNMYLHGDGGSSIYEADFLDKNVT 442

Query: 293 ----------------------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                                          L+NPPF K +++     + E +N  L  +
Sbjct: 443 DPVQATAEVRAEVRQFREMLLSHPSGLVDVVLTNPPFAKVYDR-----KTERENLILAEY 497

Query: 325 G-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 +    S++F     + L++    GGR   V+    L    +GS  +E R +L  
Sbjct: 498 ELAATEEKLKSSLMFFERYHDLLKI----GGRLISVIDDGIL----SGSSYAEFRNYLRR 549

Query: 384 NDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
             LI  IV+LP D F R+   + T + IL  R     + +         +  + +  ++R
Sbjct: 550 KFLIRGIVSLPGDAFQRSQARVKTSIVILEKRDPTSEQDQGPAFRYACRYVGVDDPKRQR 609

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            +  D + R++    ++R +  +   +  R+          P       D+  L RL+A 
Sbjct: 610 TLPIDVETRRLAKEEIARVSSLYKDFVAGRSV---------PPEFVIQADRL-LDRLDAK 659

Query: 502 ITWRKLSPLHQSFWLDI---LKPMMQQIYP 528
            T+ + S + Q+ WLD    ++P+ + I P
Sbjct: 660 -TFEQTSRMVQT-WLDQGLNVQPIHELIVP 687


>gi|292656397|ref|YP_003536294.1| type I restriction-modification system methylation subunit
           [Haloferax volcanii DS2]
 gi|291370225|gb|ADE02452.1| type I restriction-modification system methylation subunit
           [Haloferax volcanii DS2]
          Length = 464

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 51/263 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V    YE L++R+  E ++GA  + TPR  +      +           P     ++DP 
Sbjct: 129 VKGTAYEALLQRYAEE-AKGAGQYFTPRPAIKAIVKAV----------DPDHDDDIHDPA 177

Query: 214 CGTGGFLTDAMNHVADCG------SHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLE 265
            GTGGFL  A  H+ +        S  +   ++  +  G EL PET  + +  + +  L+
Sbjct: 178 AGTGGFLIHAFEHILEKTNEGLDLSRDERRELMTENLSGMELVPETRRLGLMNLALHDLQ 237

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGR 323
                   +N + G +LS    T + +   L+NPP+G  +K ++ +D    + ++ EL  
Sbjct: 238 -------PQNFEVGDSLSLGPHTDESYDVILTNPPYGGNQKKKRARDDFMVDTRSPELN- 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                         F+ H  + L+     GG   +V+    LF   A      IR  L E
Sbjct: 290 --------------FVQHNMSLLK----QGGECGMVVPDGTLFQSGAA---QRIRENLFE 328

Query: 384 NDLIEAIVALPTDLFF-RTNIAT 405
           +  +  ++ LP   F   TN+AT
Sbjct: 329 DFNVHTVLVLPIGAFQPYTNVAT 351


>gi|17548113|ref|NP_521515.1| type I restriction enzyme M protein [Ralstonia solanacearum
           GMI1000]
 gi|17430420|emb|CAD16893.1| probable typeIrestriction enzyme m protein [Ralstonia solanacearum
           GMI1000]
          Length = 481

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 119/309 (38%), Gaps = 60/309 (19%)

Query: 103 YIASFSDNAKAI---FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           ++ +  DN  A     ED  F+     L    LL +I +    I LH   V       +Y
Sbjct: 98  FLQALGDNDPAAGRHMEDIRFT-----LTTPALLARIVQLLDAIPLHRRDV----RGAVY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGG 218
           E L+ R       GA  F TPR +V     L   DP D           TL DP  GT G
Sbjct: 149 ESLLGRIALTRRSGA--FHTPRHIVRFMVELTRPDPSD-----------TLCDPAAGTCG 195

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           FL  A  ++       +  P L+   ++     H +     + R +      +L  +  +
Sbjct: 196 FLAAAGEYL------RREHPGLLHDARQSAHFHHGMFHGHEIDRAMLRIGSMNLLLHGVE 249

Query: 279 GSTLSK-DLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLP 329
           G+ L   D   G        +   L++PPF                 G++ R G  P L 
Sbjct: 250 GAGLRHGDALAGAHADETGAYSLILTHPPF----------------TGDVDRGGADPDLL 293

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           ++       L+ LA  L L    GGRAA+++    LF   +G     +RR L+E+  +E 
Sbjct: 294 RLVRTRKTELLFLARCLRL-LRPGGRAAVIVPDGVLFG--SGIAHRTLRRMLVEDHRLEG 350

Query: 390 IVALPTDLF 398
           ++ LP  +F
Sbjct: 351 VIKLPGGVF 359


>gi|222055951|ref|YP_002538313.1| N-6 DNA methylase [Geobacter sp. FRC-32]
 gi|221565240|gb|ACM21212.1| N-6 DNA methylase [Geobacter sp. FRC-32]
          Length = 818

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 161/405 (39%), Gaps = 79/405 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +M + +E+L+    +    G   F TPR ++     LL DP+ +         + + DP 
Sbjct: 148 IMGDTFEYLLSEVATAGKNG--QFRTPRHLIRFMVELL-DPEPS---------QRVIDPA 195

Query: 214 CGTGGFLTDAMNHVADCGSHHK---IPPILVPH---GQELEPETHAVCVAGMLIRRLESD 267
            GTGGFL     ++    S  +   +     PH   G     E +A    G     L++D
Sbjct: 196 AGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQYAAIHHGANFVGLDND 255

Query: 268 PR-----------RDLSK-NIQQGSTLSKD--------LFTGKRFHYCLSNPPFGKKWEK 307
                         DL+  ++ QG +LSK         L   + + + L+NPPF      
Sbjct: 256 RTMARIGWMNLILHDLTDPHLLQGDSLSKRDGKPELARLMESETYDFVLANPPFTGT--V 313

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--------GGRAAIV 359
           D + +EK+ K           P+ ++        + NK EL            GGR A++
Sbjct: 314 DSNDLEKDSKI---------FPRAAERGKKKEDAITNKSELLFLWLMLDLLQVGGRCAVI 364

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
           +    LF          +RR LL   ++E +++LP  +F   T + T + I    + E R
Sbjct: 365 IPEGVLFGNT--DAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIF---RKETR 419

Query: 419 RGKVQLINATD------LW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           R   Q    T       +W   +  +G       ++Q  Q  D++ + E  KF   L + 
Sbjct: 420 RDDKQTFTGTTAPRTEYVWFYEVEEDGYSLNAKRNEQPGQRNDLWDALE--KFKAWLSHG 477

Query: 472 TFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             G +R +  +L+P   SF  ++  LA L    T  KL+P  ++F
Sbjct: 478 REGAQRYEKTLLQP---SFHPERWRLALLRD--TADKLTPAGEAF 517


>gi|310287718|ref|YP_003938976.1| N-6 DNA methylase [Bifidobacterium bifidum S17]
 gi|309251654|gb|ADO53402.1| putative N-6 DNA methylase [Bifidobacterium bifidum S17]
          Length = 843

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 46/252 (18%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           + V +G   + TP+ ++  A  L+ +D  D +            DP CGTGGFL +  + 
Sbjct: 300 ANVKQGEGQYFTPQRIIESAVKLMEIDYHDKVI-----------DPACGTGGFLFETYST 348

Query: 227 VADCGSHHKIPPILV-----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +    S  +   I        +G +L+     +  A M+         RD S NI  G +
Sbjct: 349 LLKRASGEQRDEIRTWAHRNLYGVDLDSINVKLARALMI-------GARDGSTNIVLGDS 401

Query: 282 LSKDLF-------------TGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPG 327
           L +  +             T   +   L+NPPFG++ + +  DA + ++   +    G  
Sbjct: 402 LREQKWQDFPMLTPVLGRETDGSYDVVLTNPPFGERLKIRATDAKQAKYSICQHTSGGYP 461

Query: 328 LPKISDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             K SD  + L  M  A +L     GGGR  IVL  +  F+    S     R+W+  +  
Sbjct: 462 SDKYSDTELGLVFMERAYRLLA---GGGRLGIVLPETYFFS----SSYQWFRKWVSRHFD 514

Query: 387 IEAIVALPTDLF 398
           + A++ +P + F
Sbjct: 515 VLAVMNIPMEAF 526


>gi|225568452|ref|ZP_03777477.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM
           15053]
 gi|225162680|gb|EEG75299.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM
           15053]
          Length = 605

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 30/200 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNH-VADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRL 264
            + DP CG+G FL  AM   + DC +  +   I     +G E +   + +    MLI   
Sbjct: 301 VVLDPCCGSGSFLVRAMTQALDDCATAAEQETIKRNQIYGIEFDENVYGLATTNMLI--- 357

Query: 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELG 322
                 D + NI+QGS     D     + +  L NPP+ G++    +  V+   KN    
Sbjct: 358 ----HSDGNSNIRQGSCFKLSDWIKEAKPNVILMNPPYNGQRIHLPEHYVKTWTKN---- 409

Query: 323 RFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-SEIRR 379
                  K  D S  + F+ ++A+ L    N   + A++L   P+      SGE + ++ 
Sbjct: 410 -------KKEDPSKGLYFVKYIADTLN-SINQQAKLAVLL---PVACAIGTSGEIARLKS 458

Query: 380 WLLENDLIEAIVALPTDLFF 399
            +L+ + ++A+  LP ++F+
Sbjct: 459 EILKENTLDAVFTLPNEIFY 478


>gi|302543740|ref|ZP_07296082.1| N-6 DNA methylase superfamily protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461358|gb|EFL24451.1| N-6 DNA methylase superfamily protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 393

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 117/287 (40%), Gaps = 51/287 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           + +  +R   ++ ++G+  + TP D+  L     + P D            + DP CG+G
Sbjct: 28  LLDQCLRELSADQADGSH-YFTPDDMARLMVGAAV-PRDG---------HRVLDPVCGSG 76

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L ++  +V +      + P +   G+E    T  V      +R +        +    
Sbjct: 77  GLLVESHRYVRE---RVGLNPAMSLQGKEQHAHTWQVARMNFAVRGI-------TAHVFP 126

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-------- 329
            G +L++     +R    L+N PF ++     D   ++ +    GR  P LP        
Sbjct: 127 PGDSLAEP--EPERHDIVLANLPFNQR-----DWAPEDKEEQAAGRSAPPLPVDPRWPEE 179

Query: 330 KISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             S GS    ++ H+A+ L   P G G   + L    + N R         R LL  DL+
Sbjct: 180 PPSRGSANSAWIQHIAHALA--PAGRG---VFLMGDSVANSRQPVTRRLRER-LLREDLV 233

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-------ERRGKVQLINA 427
           E ++ALP  +F  +  +  LW+L+  K+        +RR +V  +NA
Sbjct: 234 ECVIALPLRVFGHSKASACLWVLNRDKSARPGWGVLDRRQQVLFVNA 280


>gi|25028882|ref|NP_738936.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|259507944|ref|ZP_05750844.1| type I restriction-modification system methylase [Corynebacterium
           efficiens YS-314]
 gi|23494169|dbj|BAC19136.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|259164439|gb|EEW48993.1| type I restriction-modification system methylase [Corynebacterium
           efficiens YS-314]
          Length = 598

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 37/205 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCG-SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           T++DP CG GG L    N   +     + I  + V   Q      HA  +AG+      S
Sbjct: 138 TVFDPACGIGGTLLRLYNKQQNLALIGNDIDGVAVTIAQ-----LHA-YLAGIPATFTHS 191

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             +L+ ++    R    ++ PP G + ++D        +   L R G 
Sbjct: 192 D-------------SLTSEIHGELRSQTIITEPPMGMRPDRDV-------QQNVLARAGF 231

Query: 327 GLPKISDGSMLFL-MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                     LFL M L+N   L P  GG A ++ S++  F G       +IR+ L+   
Sbjct: 232 DAAGALTSDELFLYMALSN---LTP--GGYAYVLTSTAAGFRG----ASQQIRQELVARG 282

Query: 386 LIEAIVALPTDLFFRTNIATYLWIL 410
           L+EA++ LP+ L   + I T LW+L
Sbjct: 283 LVEAVIQLPSRLLPYSGIPTLLWVL 307


>gi|218690008|ref|YP_002398220.1| putative HsdM; type I restriction modification enzyme methylase
           subunit [Escherichia coli ED1a]
 gi|330000674|ref|ZP_08303787.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3]
 gi|218427572|emb|CAR08468.2| putative HsdM; type I restriction modification enzyme methylase
           subunit [Escherichia coli ED1a]
 gi|328537910|gb|EGF64096.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3]
          Length = 557

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 69/276 (25%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    +    G   F TPR ++ L   L+           P + + + DP 
Sbjct: 170 IQGDVYEFLLSEIATAGKNG--QFRTPRHIIKLMADLV----------QPQLGQRIADPA 217

Query: 214 CGTGGFLTDAMNHVA-------------DCGSHH---------------KIPPILVP--- 242
           CGTGGFL  A  ++                GS H               K   IL+    
Sbjct: 218 CGTGGFLLGAYQYILTQLSLSQNLKRDNSKGSTHDEDGFFRTSVTAALTKKARILLQESL 277

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G +++     + +  +++  ++ +P  D         TLSK      ++   L+NPPF 
Sbjct: 278 YGYDIDATMVRLGLMNLMMHGID-EPHIDYQ------DTLSKSYSEETKYDIVLANPPF- 329

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                   ++++   N  L          +   +LF+ ++   L+     GG A +++  
Sbjct: 330 ------TGSIDRGDINENLKL------STTKTELLFVENIYRLLK----KGGTACVIVPQ 373

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             LF   +G    E+R+ L+E   ++A++ LP+ +F
Sbjct: 374 GVLFG--SGKAFKELRQTLVERCDLKAVITLPSGVF 407


>gi|154488697|ref|ZP_02029546.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis
           L2-32]
 gi|154082834|gb|EDN81879.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis
           L2-32]
          Length = 492

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 67/281 (23%)

Query: 138 KNFSGI-ELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           K  SGI EL  + V D   + ++YE+++ +  +  + G   F TP+ + ++  AL     
Sbjct: 124 KAVSGIDELLSNYVQDADDLGDLYEYMLSKLNTAGTNGQ--FRTPQHIRNMMVALA---- 177

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-- 253
                  PG +  + DP CGT GFL  A   +               HGQE+  E     
Sbjct: 178 ----GPKPGQL--ICDPACGTAGFLISAAESIRKN------------HGQEMTEEQWKTF 219

Query: 254 ----------------VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                           +    +L+  ++         +I+   +LS+      +F   L+
Sbjct: 220 SGEQFTGFDTDQTMVRISAMNLLLHSID-------HPDIRNQDSLSRLNTIRDKFDLILA 272

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF         +V+ E  +  L      + +     +LF+      L+L    GGR  
Sbjct: 273 NPPF-------TGSVDVEDIDDSL----KAVVETKQTELLFVALFLRMLKL----GGRCV 317

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            ++ +  LF   +     ++R  L++N  +EAI+ +P+ +F
Sbjct: 318 CIVPNGVLFRSNS-KAYRQLRAELVDNQRLEAIIYMPSGVF 357


>gi|282878166|ref|ZP_06286963.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
 gi|281299744|gb|EFA92116.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
          Length = 503

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 111/262 (42%), Gaps = 45/262 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  S G  +F TPR +      ++          +P +   + D  CGTG
Sbjct: 150 IYETILKEMQSAGSSG--EFYTPRALTEFMAEIV----------NPQIGEKMADFACGTG 197

Query: 218 GFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GF+T  +  +          K     V  G E +   + +CV  +L+  ++       + 
Sbjct: 198 GFITSWLGELDKKVKTAEDRKEYNQSV-FGIEKKQFPYMLCVTNLLLHGID-------TP 249

Query: 275 NIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +   ++L+KD+       +F   L NPP+G   + D     K H         P   + 
Sbjct: 250 LVFHDNSLTKDVLNYTDEDKFDVVLMNPPYGGNEKSDV----KSH--------FPSDMRS 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LF++ +  +L+      GRAA+++    LF   A + +  I+  LL +  +  I+
Sbjct: 298 SETADLFMVLIMYRLK----KNGRAAVIVPDGFLFG--ADNTKIAIKTKLLRDFNLHTII 351

Query: 392 ALPTDLFF-RTNIATYLWILSN 412
            LP  +F   T+IAT +    N
Sbjct: 352 RLPGSIFAPYTSIATNILFFDN 373


>gi|294813056|ref|ZP_06771699.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325655|gb|EFG07298.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 795

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 33/181 (18%)

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLP 329
           D + + + G +L  D F G      L++PPF ++ W  ++ A +         R+  GLP
Sbjct: 319 DAAVSARSGDSLRADAFPGAEADAVLTHPPFNERHWGHEELAYDP--------RWEYGLP 370

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             ++  + ++ H   +L   P G    A+VL      + R+G     +R  LL    + A
Sbjct: 371 ARTESELAWVQHALARLR--PGG---TAVVLMPPAAASRRSGR---RVRAGLLRRGALRA 422

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGK---VQLINATDL-----------WTSIR 435
           +VALP        I  +LW+L  R+ E  R     V  ++  +L           WT++R
Sbjct: 423 VVALPAGAAPPYGIPLHLWVL--RRPEPGRTPAPDVLFVDTAELSGASGGRDRLDWTAVR 480

Query: 436 N 436
           N
Sbjct: 481 N 481


>gi|251773333|gb|EES53882.1| probable N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 796

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 38/218 (17%)

Query: 209 LYDPTCGTGGFLTDAMN---HVADCGSHHKIP----------PILVPHGQELEPETHAVC 255
           + DPT G+GGFL +A+    H  D   H +             +L  +G E+      +C
Sbjct: 221 VLDPTAGSGGFLLEALLQVWHGVDTKFHGQSDQQIIRTKNDFALLRVYGIEIHDILSRIC 280

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC-------LSNPPFGKKWEK- 307
              +L+         D   NI+   +     FT  R   C       + NPPFG + E+ 
Sbjct: 281 KINLLLHH-------DGHTNIEGDRSCLDTYFTKPRLRLCFEQFSKVVGNPPFGDEVEEG 333

Query: 308 DKDAV-EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           D+D + E   +N E+ +    +P       + L    + LE     GG+  +VL      
Sbjct: 334 DEDLLGENSLENFEIAKGRQKVPS----EHVILERAIDFLE----PGGQLGLVLPDGLFN 385

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           N    S    +R +L +   IEAIV+LP D  FR + A
Sbjct: 386 NQGELSNCPRVRSFLAKQGFIEAIVSLP-DFAFRKSGA 422


>gi|326441402|ref|ZP_08216136.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 33/181 (18%)

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLP 329
           D + + + G +L  D F G      L++PPF ++ W  ++ A +         R+  GLP
Sbjct: 254 DAAVSARSGDSLRADAFPGAEADAVLTHPPFNERHWGHEELAYDP--------RWEYGLP 305

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             ++  + ++ H   +L   P G    A+VL      + R+G     +R  LL    + A
Sbjct: 306 ARTESELAWVQHALARLR--PGG---TAVVLMPPAAASRRSGR---RVRAGLLRRGALRA 357

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGK---VQLINATDL-----------WTSIR 435
           +VALP        I  +LW+L  R+ E  R     V  ++  +L           WT++R
Sbjct: 358 VVALPAGAAPPYGIPLHLWVL--RRPEPGRTPAPDVLFVDTAELSGASGGRDRLDWTAVR 415

Query: 436 N 436
           N
Sbjct: 416 N 416


>gi|86141515|ref|ZP_01060061.1| putative DNA restriction-modification system, DNA methylase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832074|gb|EAQ50529.1| putative DNA restriction-modification system, DNA methylase
           [Leeuwenhoekiella blandensis MED217]
          Length = 816

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 64/299 (21%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           + + DR    I++ L+ R      + + +F+ P ++      +   P+ A          
Sbjct: 106 NEILDRYFDEIFDDLLFRLADNQGKYSGEFLLPNEISKFVVEIADMPNWA---------- 155

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++++P  G   F T    H+    +++         GQE+   T A+   GML  RL   
Sbjct: 156 SVFNPFAGLASFAT----HLNKNQNYY---------GQEIVSSTWAL---GML--RL--- 194

Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGELGR 323
               L K+ Q    +   +        F   +SNPPF  K +        ++    E   
Sbjct: 195 --MRLHKHTQINYRVEDSIHNWPGTNNFDLIISNPPFNYKIDPYIAHYFGRKKMTAETYV 252

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL  I                   N  G+ A ++S   LF G   S +  +R  L+E
Sbjct: 253 ICKGLESI-------------------NFDGKVACIVSQGMLFRG---SDDQRLRESLVE 290

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             LIE IV+LP+ +   T I   + IL+ +K   R   +++I+A+     + ++GK+ +
Sbjct: 291 QGLIETIVSLPSGMLKHTGIPICIMILTRKKNINR--TIKMIDASSF---VESKGKREK 344


>gi|312872393|ref|ZP_07732463.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092216|gb|EFQ50590.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
          Length = 329

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 22/135 (16%)

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPP+  KWE  +D            RF P     S+ +  F+     +++       +
Sbjct: 5   ISNPPYNIKWEPYED-----------KRFIPESAPKSNANYAFIQTALAEID------HQ 47

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  +L  S L    +   E EIR+WLL+   I+ ++ LP  +F  T I+  L +L+ +K 
Sbjct: 48  AVFLLPRSVL--SSSNKKEKEIRKWLLKEGYIQGVIELPERMFESTPISVCLLVLNKKK- 104

Query: 416 EERRGKVQLINATDL 430
             +   V +I+A ++
Sbjct: 105 --KTTDVMMIDAREM 117


>gi|297571613|ref|YP_003697387.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931960|gb|ADH92768.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 490

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 55/306 (17%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSE 169
            K +FED +      +  K G+L +   N    E++ D   D      IYE L++   S 
Sbjct: 109 VKGVFEDSN------QYMKDGILIRQLVNLIN-EINFDDYADLHAFGEIYETLLKELQSA 161

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--- 226
            S G  ++ TPR V      +L          +P +   + D   GT GFLT A+ H   
Sbjct: 162 GSSG--EYYTPRAVTDFMIKML----------NPKLGERVADFAAGTSGFLTSALKHLDT 209

Query: 227 -VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V       K    +   G E +P  + + V  +L+  ++             G++LS++
Sbjct: 210 QVESVEDREKFQNAVF--GIEKKPMPYLLGVTNLLLHDVD-------EPAFFHGNSLSRN 260

Query: 286 LFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           +   K   +F     NPP+G     +++AV+            P   + S+ + LF+  +
Sbjct: 261 VREYKEHEKFEVIAMNPPYGG---TEQEAVKANF---------PQAFRSSETADLFVALI 308

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RT 401
             +L+      GRA +VL    LF G  G+  +   R + E +L   I+ LP  +F   T
Sbjct: 309 TYRLK----KNGRAGVVLPDGFLF-GSDGAKLALKERLIKEFNL-HTIIRLPGSVFSPYT 362

Query: 402 NIATYL 407
           +IAT L
Sbjct: 363 SIATNL 368


>gi|251791791|ref|YP_003006512.1| N-6 DNA methylase [Dickeya zeae Ech1591]
 gi|247540412|gb|ACT09033.1| N-6 DNA methylase [Dickeya zeae Ech1591]
          Length = 570

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 107/272 (39%), Gaps = 66/272 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    +    G   F TPR ++ L   L+           P + + + DP 
Sbjct: 184 IQGDVYEFLLSEIATAGKNG--QFRTPRHIIKLIADLV----------RPQLGQRIVDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHG-QELEPETHA---VCVAGMLIRRLESDPR 269
           CGTGGFL  A  ++        +  + +  G Q+L P+        VA  L R+ +   +
Sbjct: 232 CGTGGFLLGAYQYI--------VTQLAIKDGKQDLSPDEDGFARTSVAAGLTRKTQLILQ 283

Query: 270 RDL-----------------------SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             L                         +I    TLSK       +   L+NPPF    +
Sbjct: 284 ESLYGYDIDATMVRLGLMNLMMHGIDEPHIDYQDTLSKGYNEEASYDIVLANPPFTGSID 343

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           K        ++N +L          +   +LF+ ++   L+     GG A +++    LF
Sbjct: 344 KGDI-----NENLQLA--------TTKTELLFVENIYRLLK----KGGTAGVIVPQGVLF 386

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +  +     ++R+ L+E   ++A++ +P+ +F
Sbjct: 387 S--SAKAFRDLRQTLVERCDLKAVITVPSGVF 416


>gi|257454706|ref|ZP_05619961.1| type I restriction modification system M subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257447887|gb|EEV22875.1| type I restriction modification system M subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 321

 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 39/208 (18%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPET 251
           P    T+ DP CGT GFL  A  ++           AD    +         G + +   
Sbjct: 8   PKPTDTICDPACGTAGFLVAASEYLNDHYQSEIFANADAAKRYNNGTFF---GYDFDSTM 64

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +    ML+  +E       + NI+   +LS+       +F   L+NPPF    + D  
Sbjct: 65  LRIGSMNMLLHGVE-------NPNIENRDSLSQAHADIADKFSLILANPPFAGSLDYDST 117

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           A     KN           K     +LF+      L++    GGRAA+++    LF   +
Sbjct: 118 A-----KN------LLATVKTKKTELLFIALFLRMLKI----GGRAAVIVPDGVLFG--S 160

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF 398
                 +R+ L+E   +EAI+++P+ +F
Sbjct: 161 SIAHKTLRQELVEKQQLEAIISMPSGVF 188


>gi|325125904|gb|ADY85234.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 479

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 110/264 (41%), Gaps = 34/264 (12%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +++DP   +G  L              K    +  +G+E   +   +    M+I  ++  
Sbjct: 175 SIFDPVAMSGSLL---------LTLKEKFQSKVELYGEEFSSDLFRLLKMNMVIHGIDIQ 225

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              D   N  +G  L  + F    +F      PPF   W+ D + +  +    E+G   P
Sbjct: 226 TIHD---NFVRGDFLKDEEFDANSKFDIIPMTPPFSS-WDADPELL-NDPCFSEVGVLPP 280

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                    +  L HL+          G  A++L +  LF     + E EIR++LLE   
Sbjct: 281 KSKADYAYVLRGLQHLSE--------DGTMAVMLPTGALFRS---ATEGEIRKYLLEKQN 329

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIIN 445
           I A+++LP        I T L I   +K++    K+  I+A+     ++N  + K+  + 
Sbjct: 330 IHAVISLPQGARNYMAIYTVLLIFKQKKSD----KILFIDAS--RDGVKNATRLKQNFLT 383

Query: 446 DDQRRQILDIYVSREN-GKFSRML 468
           ++   +IL IY +RE   ++SR++
Sbjct: 384 EEGFTKILHIYRNREEVDRYSRLV 407


>gi|218439051|ref|YP_002377380.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218171779|gb|ACK70512.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 711

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 52/249 (20%)

Query: 155 MSNIY-EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           + N+Y  H++ R  +  S G   + TPR +      L  + PD            +L D 
Sbjct: 123 IPNLYNHHILFRLSTRQSGGR--YPTPRHITKFIYNLAQVKPD-----------HSLADF 169

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+GGFL +         ++HK        G ++ PE   +    + +R+L   P    
Sbjct: 170 ACGSGGFLVE---RELTVDNYHKT------WGIDISPEWIRLAYTNIALRKL---PPLLR 217

Query: 273 SKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           S N     T +K  F  K    F   L NPPFG+K +  K AV         G+ G  + 
Sbjct: 218 SGNALDVETFNKLKFKQKEYTIFDRILMNPPFGEKIDT-KLAV---------GKLGKTVG 267

Query: 330 KISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             S+ ++  L +  LA          G AAI++ S  LF+      E E+R+ L++   +
Sbjct: 268 SRSETALTTLAIQQLAE--------DGIAAILVPSGLLFSN--SKAEKELRQTLIDEYHL 317

Query: 388 EAIVALPTD 396
           +A++ LP D
Sbjct: 318 KAVLTLPKD 326


>gi|57242351|ref|ZP_00370290.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017031|gb|EAL53813.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 818

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%)

Query: 204 GMIRT--LYDPTCGTGGFLTDAM-NHVADC--GSHHKIPPILVP-------HGQELEPET 251
           G+ RT  + D TCG+G FL  AM   ++DC  G   K    L+        +G E+E + 
Sbjct: 310 GVDRTKRVLDITCGSGSFLVQAMVKELSDCKRGKTEKEAKELMEKVKKENIYGIEVEEKA 369

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKD 310
           + +    MLI         D + NI+ GS   K  F         L NPP+  K      
Sbjct: 370 YGLATTNMLIHG-------DGNSNIEFGSCFEKKEFIKAANPDIILMNPPYNAK----PI 418

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL-----ELPPNGGGRAAIVLSSSPL 365
           ++ + +KN        G    + G ++F+ +L++ +     E       R  + L+    
Sbjct: 419 SIPEYYKNKWSKGAKEGKEDPTKG-LVFIQYLSDIIKEINEEREAKNEARKEVKLAVLLP 477

Query: 366 FNGRAGSGE--SEIRRWLLENDLIEAIVALPTDLFF 399
            +   GS      I+  +LEN+ +EA+  LP ++F+
Sbjct: 478 MSAAIGSKSDIKNIKEAMLENNTLEAVFTLPAEVFY 513


>gi|322379880|ref|ZP_08054167.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5]
 gi|321147715|gb|EFX42328.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5]
          Length = 303

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 104/288 (36%), Gaps = 57/288 (19%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------YLAFGGSN 66
           IW  A+ L G     DF + +L   L R L   L    +   +K         L    +N
Sbjct: 23  IWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDASFNYAKLKDEKAN 82

Query: 67  IDLESFVKVAGYS------FYNTSEY--SLSTLGSTNTR-----NNLE--SYIASFSDNA 111
           +  E  ++  G+       F N  E    L   G  NT       N+E  S  +   +N 
Sbjct: 83  LAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNIEASSLQSEAQENF 142

Query: 112 KAIFEDFDFSS------------TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           K +F D D +S             IARL +     +I         H       V  + Y
Sbjct: 143 KGLFADLDMNSDKLGNGVKSKNENIARLLEGVASMQIS--------HYQKNGIDVFGDAY 194

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+  + S   +   +F TP +V  L T L++    +        I  +YDP CG+G  
Sbjct: 195 EFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKS--------INKVYDPCCGSGSL 246

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           L       A       I       GQE+   T+ +C A ML+  ++ D
Sbjct: 247 LL----QFAKILGVENIKQGFF--GQEINQTTYNLCRANMLLHNVDYD 288


>gi|325848783|ref|ZP_08170293.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480427|gb|EGC83489.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 703

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 94/246 (38%), Gaps = 64/246 (26%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP CG G F+ +A+          KI        ++LE     +    M+  R   D
Sbjct: 357 SICDPACGVGKFILEAI--------EDKISEYFTYKKKKLEKRIEIIGYDKMMSER--DD 406

Query: 268 PRRDLSK---------------NIQQGSTLSKDLFTG-------------------KRFH 293
               L+K               ++Q   T+S+ L                       ++ 
Sbjct: 407 LTIILAKANMLIYFSELFKKNNSLQDVKTISQSLLNDSYYLHQTMLGTLGVGELEENKYD 466

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPP    + + K  +E     G     G G+        LFL  +   L+     G
Sbjct: 467 LILANPP----YYQSKVMMEAAKDTGYYDLNGAGVES------LFLEWILKSLK----PG 512

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL    +F+  A S   +++ ++L N  IEAI++LP   FF T   TY  IL+ R
Sbjct: 513 GTANVVLPDG-IFSNYANS---KLKEYMLNNFFIEAIISLPVGAFFNTPKKTY--ILTVR 566

Query: 414 KTEERR 419
           K  ER 
Sbjct: 567 KATERE 572


>gi|162456792|ref|YP_001619159.1| type I restriction-modification system M subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161167374|emb|CAN98679.1| probable type I restriction-modification system,M subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 360

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 20/160 (12%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK----- 330
           I+   +L+ D   G R+   L+NPPFGK     K +V    + G+  R    + +     
Sbjct: 38  IETRDSLAAD--PGARYSMVLTNPPFGK-----KSSVMVLTQEGDESREALTVMREDFWA 90

Query: 331 -ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+  + F+ H+   L +     GRAA+V+  + LF G  G+GE+ IRR LL +  +  
Sbjct: 91  TTSNKQLNFVQHVKTILAI----HGRAAVVVPDNVLFEG--GAGET-IRRKLLHDCDVHT 143

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           ++ LPT +F+   +   +     +   E+    +L +  D
Sbjct: 144 LLRLPTGIFYAQGVKANVLFFDKKPASEKPWTRKLCSLCD 183


>gi|116629553|ref|YP_814725.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri ATCC 33323]
 gi|238854088|ref|ZP_04644437.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri 202-4]
 gi|311110804|ref|ZP_07712201.1| type I restriction-modification system, M subunit [Lactobacillus
           gasseri MV-22]
 gi|116095135|gb|ABJ60287.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri ATCC 33323]
 gi|238833295|gb|EEQ25583.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri 202-4]
 gi|311065958|gb|EFQ46298.1| type I restriction-modification system, M subunit [Lactobacillus
           gasseri MV-22]
          Length = 504

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 114/279 (40%), Gaps = 47/279 (16%)

Query: 131 GLLYKICKNFSGI-ELHPDTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           GLL K+ ++   I  L    V  R  +  ++YE+L+ +  +    G   F TPR ++ + 
Sbjct: 132 GLLSKVVESLDEIYRLMDADVSKRADIRGDVYEYLLGKLSTAGRNGQ--FRTPRHIIKMM 189

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCGSHHKIPPI 239
             L+          +P    ++ DP  GT GFL +A  +        + D          
Sbjct: 190 VELM----------NPQANDSICDPAAGTAGFLVEAAEYLQTKKSAEIYDSKESKDYFHN 239

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
            +  G + +P    +    ML   +++ P+      I+   +LS       ++   ++NP
Sbjct: 240 QLFTGYDTDPTMLRIGAMNMLTHGVDN-PK------IEYQDSLSDQNNDRDKYSLIMANP 292

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K   D D+V  +              K ++   L L     ++      GGR A +
Sbjct: 293 PF--KGSLDYDSVSDD-------LLKTCKTKKTELLFLTLFLKMLRV------GGRCACI 337

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    LF   +      IR+ L+E++ +EA++++P+ +F
Sbjct: 338 VPDGVLFG--SSKAHKSIRKVLVEDNNLEAVISMPSGVF 374


>gi|303258215|ref|ZP_07344222.1| type I restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
 gi|302858968|gb|EFL82052.1| type I restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
          Length = 547

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 38/326 (11%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S+I+E+LI+ + +       ++ TP  +  +   LL+     L           YDP+ 
Sbjct: 184 FSHIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDATNLHS------IECYDPSA 237

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTG  L    + + +     +         Q          +   L+  L++  + D   
Sbjct: 238 GTGTLLMALAHQIGE----DRCTIFSQDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLV 293

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           +    S   K+L   ++F + +SNPPF   +   ++ +          RF  G+PK+   
Sbjct: 294 SPYHKSDDGKEL---RQFDFVVSNPPFKMDFSDTREKIA-----AMPVRFWAGVPKVPKK 345

Query: 335 ---SM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDL 386
              SM     F+ H+ N L+      GR AIV+ +  +    A SG E+ I + L+++ L
Sbjct: 346 KKESMAIYTCFIQHVLNSLK----DNGRGAIVVPTGFI---TAKSGIENRILKKLVDDKL 398

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIN 445
           I   V++P+++F  T     +       + E   KV LI+A+ L    ++  G K+  +N
Sbjct: 399 IYGCVSMPSNVFANTGTNVSVLFFDKSGSSE---KVILIDASKLGEEYKDSNGLKKVRLN 455

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDY 470
             +  +I+  +  R N + FS  +D+
Sbjct: 456 PVEVNKIITTFQKRLNVEDFSVAVDF 481


>gi|297520536|ref|ZP_06938922.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli OP50]
          Length = 304

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  G
Sbjct: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAG 177

Query: 216 TGGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL +A  +V           G            G EL P T  + +   L+  +E +
Sbjct: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
              D    I+ G+TL  D     + H   +NPPFG
Sbjct: 238 --LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270


>gi|256545587|ref|ZP_05472947.1| type I restriction-modification system, M subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398798|gb|EEU12415.1| type I restriction-modification system, M subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 674

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 148/410 (36%), Gaps = 119/410 (29%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFD--------FSSTIARLE 128
           FY TSE   +  G    +N +E     +     NAK IFE  D         S  ++ L+
Sbjct: 218 FYATSEERSNGDGQLTIKNRIEKIFERVKKEKKNAK-IFEPNDSIKLHPRTLSYIVSELQ 276

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K  LL              +T  D +    YE ++   G+ +     +F TPR+V+ +  
Sbjct: 277 KYSLL--------------NTRID-IKGKAYEEIV---GAYLRGDRGEFFTPRNVMQMVV 318

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH---------VADCGS------- 232
            ++          +P +   + D +CGTGGF+  AM H           D G        
Sbjct: 319 EMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLRSEFTKDIGKDKENWND 368

Query: 233 ------HHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--- 281
                   KI  +   +  G ++ P+        M++         D S NI Q ++   
Sbjct: 369 YEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVM-------NNDGSGNILQTNSLLP 421

Query: 282 -----------LSKDLFTGKRF---HY-------CLSNPPFGKKWEKDKDAVEKEHKNGE 320
                      L+  L   K+    HY        ++NPPFG K      A+  +    E
Sbjct: 422 PHEWTDDFKTRLASALQIDKKSIINHYDIGFFDVIVTNPPFGSKIPIKDHAILSQF---E 478

Query: 321 LGRFGPGLPKISDGSM------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           L R      K    +M            LF+      L+     GGR  IVL  + L  G
Sbjct: 479 LARIWNQDKKTGKWTMTDRYQSSVSPEILFIERCYQFLK----PGGRMGIVLPDALL--G 532

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
             G+G   IR WL++N  I A + L  D F  R    T + IL  +  EE
Sbjct: 533 SPGTG--YIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEE 580


>gi|317506901|ref|ZP_07964673.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254829|gb|EFV14127.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 484

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 102/249 (40%), Gaps = 42/249 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +    G   F TPR ++ L   +            P     + DP CGT
Sbjct: 142 DLYEYLLSKIAAAGVNG--QFRTPRHIIDLMVKMT----------DPQPKDEICDPACGT 189

Query: 217 GGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++ D  +         K     + HG + +     +    ML   +E+ P 
Sbjct: 190 AGFLVAASEYIRDTHADALLGEEQRKHFHRSMFHGYDFDSTMLRIGSMNMLQHGIEA-PD 248

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                ++ +G+  S+D    +++   L+NPPF         +++ E  + +L R      
Sbjct: 249 IRYRDSLSEGA--SED---AEKYTLILANPPFAG-------SLDYEATSKDLQRV----- 291

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            +       L        L P  GGRAA+++    LF   +      +R+ L+E   +EA
Sbjct: 292 -VKTKKTELLFLALFLKLLKP--GGRAAVIVPDGVLFG--SSKAHKALRQTLVEEQKLEA 346

Query: 390 IVALPTDLF 398
           +V LP+ +F
Sbjct: 347 VVKLPSGVF 355


>gi|322379268|ref|ZP_08053654.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
 gi|321148305|gb|EFX42819.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
          Length = 301

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 34/171 (19%)

Query: 109 DNAKAIFEDFDFSS------------TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           +N K +F D D +S             IARL +     +I         H       V  
Sbjct: 138 ENFKGLFADLDMNSDKLGNGVKSKNENIARLLEGVASMQIS--------HYQKNGIDVFG 189

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE L+  + S   +   +F TP +V  L T L++    +        I  +YDP CG+
Sbjct: 190 DAYEFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKS--------INKVYDPCCGS 241

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           G  L       A       I       GQE+   T+ +C A ML+  ++ D
Sbjct: 242 GSLLL----QFAKILGVENIKQGFF--GQEINQTTYNLCRANMLLHNVDYD 286


>gi|217971595|ref|YP_002356346.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217496730|gb|ACK44923.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 818

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 124/314 (39%), Gaps = 68/314 (21%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +M + +E+L+    +    G   F TPR ++     L+ DP+       PG  + + DP 
Sbjct: 148 IMGDTFEYLLSEMATAGKNGQ--FRTPRHLIRFMVELM-DPE-------PG--QRVIDPA 195

Query: 214 CGTGGFLTDAMNHVA---DCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESD 267
            GTGGFL     ++        +  +     PH   G    P+ ++   +G     L++D
Sbjct: 196 AGTGGFLFSTQQYLMRKYSATENLVLEWDGTPHRTDGAAATPDQYSAIHSGANFVGLDND 255

Query: 268 PRRDLSK--------------NIQQGSTLSK---------DLFTGKRFHYCLSNPPFGKK 304
             R +++              ++ QG +LSK         DL   + + + L+NPPF   
Sbjct: 256 --RTMARIGWMNLILHDITDPHLLQGDSLSKREGKPKQLSDLLASEVYDFVLANPPFTGI 313

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--------GGRA 356
            + D    + E  +    R G G  K  D S      + NK EL            GGR 
Sbjct: 314 IDSD----DLEPDSILFPRVG-GKGKKKDDS------ITNKSELLFLWLMLDLLRVGGRC 362

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+++     F          +RR LL   ++E +++LP  +F   T + T + I    + 
Sbjct: 363 AVIIPEGVFFGNT--DAHMRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIF---RK 417

Query: 416 EERRGKVQLINATD 429
           E RR   Q    ++
Sbjct: 418 ETRRDDKQAFTGSN 431


>gi|212715992|ref|ZP_03324120.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661359|gb|EEB21934.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 73

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 29/48 (60%)

Query: 8  AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
          A    N IW  A+ +    +  D+ K+ILPF +LRR ECALEPTR  V
Sbjct: 7  AFDYVNDIWSIADYVRDVIRPADYNKLILPFAVLRRFECALEPTRDKV 54


>gi|53720725|ref|YP_109711.1| putative restriction modification system methylase [Burkholderia
           pseudomallei K96243]
 gi|167740436|ref|ZP_02413210.1| putative restriction modification system methylase [Burkholderia
           pseudomallei 14]
 gi|167817648|ref|ZP_02449328.1| putative restriction modification system methylase [Burkholderia
           pseudomallei 91]
 gi|52211139|emb|CAH37128.1| putative restriction modification system methylase [Burkholderia
           pseudomallei K96243]
          Length = 866

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 97/251 (38%), Gaps = 57/251 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------ 224
           + TPR +V L +A++          S      + DP CGTGGFL   M            
Sbjct: 314 YFTPRPLVRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLA 373

Query: 225 NHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +  +H ++   +   V  G +            M++         D   NIQ  ++
Sbjct: 374 DRAINAATHRELVRKIRQQVFFGSDANEGVACAAKMNMIVAG-------DGHSNIQPENS 426

Query: 282 LSKDLFTGKRFH-------YCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKI 331
           L++   T K ++       + L+NPPFG        DKD          +G+F     + 
Sbjct: 427 LAR---TAKNWNIQDSDCDFILTNPPFGTSESGALSDKD----------MGQFEV---QT 470

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + G +LFL     K+ L    GG    V+    L    A    + IR+WLL    + A+V
Sbjct: 471 TKGQLLFL----QKMVLSARRGGEICTVIDEGVLNTDTA----APIRKWLLSKAKLLAVV 522

Query: 392 ALPTDLFFRTN 402
            LP D  FR N
Sbjct: 523 RLP-DETFRPN 532


>gi|332885870|gb|EGK06116.1| hypothetical protein HMPREF9456_02380 [Dysgonomonas mossii DSM
           22836]
          Length = 1005

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 44/266 (16%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P  ++S+IYE  +     +  +G     TP  +V          D  +  + P     +
Sbjct: 318 LPIELISHIYEDFLADENGQKKKGV--VYTPPYLVQFLI------DQCMPLKDPKQNFKI 369

Query: 210 YDPTCGTGGFLTDAMNHVAD---CGSHHKIPP---------ILVPH--GQELEPETHAVC 255
            DP CG+G FL  A   +       ++ K P          +L  +  G +LE E   + 
Sbjct: 370 LDPACGSGIFLVGAFKRMIQWWRVQNNWKKPKKENIQELKDLLQKNIFGCDLEDEAVTLS 429

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------------KRFHYCLSNPPFGK 303
              + +  L+S   R++ +N+     +  +L+ G              FH  + NPPF  
Sbjct: 430 YFSLGLALLDSLSPREIWRNVHFDDLIGYNLYQGDFFKTLHEGKIKSDFHLIIGNPPFNS 489

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           ++    + V+K+ K     R  P +P  +  ++LFL      L +    GG   ++L S 
Sbjct: 490 EFTDWANLVDKKEKENNTER--PDIPD-NQIALLFLEQSIKLLRV----GGNCCLILPSG 542

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEA 389
           P+      +   + R++L E   I+ 
Sbjct: 543 PVL---YNTNTHDFRKYLFEQYYIKG 565


>gi|67459800|ref|YP_247423.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67459869|ref|YP_247491.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005333|gb|AAY62258.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005402|gb|AAY62326.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
          Length = 332

 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 17/110 (15%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           S I  L K  +L  I       +LH       +  + +E+ +R +G   ++  E F TPR
Sbjct: 2   SPIETLVKPSILNTIVAKLD--DLHLSATHSDIKGDAFEYFLRNYGGADTDFGEYF-TPR 58

Query: 182 DVVHLATAL--LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
              H+ TAL  LLDP    F E       +YDP CGTGG L  +  H+ D
Sbjct: 59  ---HIVTALVNLLDPK---FGEK------VYDPFCGTGGMLITSYKHIYD 96


>gi|315638462|ref|ZP_07893639.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21]
 gi|315481453|gb|EFU72080.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21]
          Length = 641

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%)

Query: 204 GMIRT--LYDPTCGTGGFLTDAM-NHVADC--GSHHKIPPILVP-------HGQELEPET 251
           G+ RT  + D TCG+G FL  AM   ++DC  G   K    L+        +G E+E + 
Sbjct: 310 GVDRTKRVLDITCGSGSFLVQAMVKELSDCKRGKTEKEAKELMEKVKKDNIYGIEVEEKA 369

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKD 310
           + +    MLI         D + NI+ GS   K  F         L NPP+  K      
Sbjct: 370 YGLATTNMLIHG-------DGNSNIEFGSCFEKKEFIKAANPDIILMNPPYNAK----PI 418

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL-----ELPPNGGGRAAIVLSSSPL 365
           ++ + +KN        G    + G ++F+ +L++ +     E       R  + L+    
Sbjct: 419 SIPEYYKNKWSKGAKEGKEDPTKG-LVFIQYLSDIIKEINEEREAKNEVRKEVKLAVLLP 477

Query: 366 FNGRAGSGE--SEIRRWLLENDLIEAIVALPTDLFF 399
            +   GS      I+  +LEN+ +EA+  LP ++F+
Sbjct: 478 MSAAIGSKSDIKNIKEAMLENNTLEAVFTLPAEVFY 513


>gi|288573654|ref|ZP_06392011.1| type I restriction-modification system, M subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569395|gb|EFC90952.1| type I restriction-modification system, M subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 10/187 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L+  +W+ A  L G     DF   I P    +RL    +   +   E+       +++
Sbjct: 16  GTLSGHLWETANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYTVALEE----SDGDVE 71

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTI 124
              F +   +       +      S N  + L+  +        D    IF D  +++  
Sbjct: 72  FAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK- 130

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL  A LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TPR VV
Sbjct: 131 DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSVV 189

Query: 185 HLATALL 191
            L   +L
Sbjct: 190 ALMVRIL 196


>gi|254198485|ref|ZP_04904906.1| putative type I restriction-modification system M subunit
           [Burkholderia pseudomallei S13]
 gi|169655225|gb|EDS87918.1| putative type I restriction-modification system M subunit
           [Burkholderia pseudomallei S13]
          Length = 866

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 97/251 (38%), Gaps = 57/251 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------ 224
           + TPR +V L +A++          S      + DP CGTGGFL   M            
Sbjct: 314 YFTPRPLVRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLA 373

Query: 225 NHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +  +H ++   +   V  G +            M++         D   NIQ  ++
Sbjct: 374 DRAINAATHRELVRKIRQQVFFGSDANEGVACAAKMNMIVAG-------DGHSNIQPENS 426

Query: 282 LSKDLFTGKRFH-------YCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKI 331
           L++   T K ++       + L+NPPFG        DKD          +G+F     + 
Sbjct: 427 LAR---TAKNWNIQDSDCDFILTNPPFGTSESGALSDKD----------MGQFEV---QT 470

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + G +LFL     K+ L    GG    V+    L    A    + IR+WLL    + A+V
Sbjct: 471 TKGQLLFL----QKMVLSARRGGEICTVIDEGVLNTDTA----APIRKWLLSKAKLLAVV 522

Query: 392 ALPTDLFFRTN 402
            LP D  FR N
Sbjct: 523 RLP-DETFRPN 532


>gi|126440241|ref|YP_001060649.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 668]
 gi|126219734|gb|ABN83240.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 668]
          Length = 866

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 97/251 (38%), Gaps = 57/251 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------ 224
           + TPR +V L +A++          S      + DP CGTGGFL   M            
Sbjct: 314 YFTPRPLVRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLA 373

Query: 225 NHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +  +H ++   +   V  G +            M++         D   NIQ  ++
Sbjct: 374 DRAINAATHRELVRKIRQQVFFGSDANEGVACAAKMNMIVAG-------DGHSNIQPENS 426

Query: 282 LSKDLFTGKRFH-------YCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKI 331
           L++   T K ++       + L+NPPFG        DKD          +G+F     + 
Sbjct: 427 LAR---TAKNWNIQDSDCDFILTNPPFGTSESGALSDKD----------MGQFEV---QT 470

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + G +LFL     K+ L    GG    V+    L    A    + IR+WLL    + A+V
Sbjct: 471 TKGQLLFL----QKMVLSARRGGEICTVIDEGVLNTDTA----APIRKWLLSKAKLLAVV 522

Query: 392 ALPTDLFFRTN 402
            LP D  FR N
Sbjct: 523 RLP-DETFRPN 532


>gi|254300673|ref|ZP_04968118.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 406e]
 gi|157810477|gb|EDO87647.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 406e]
          Length = 605

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 97/251 (38%), Gaps = 57/251 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------ 224
           + TPR +V L +A++          S      + DP CGTGGFL   M            
Sbjct: 53  YFTPRPLVRLMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLA 112

Query: 225 NHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +  +H ++   +   V  G +            M++         D   NIQ  ++
Sbjct: 113 DRAINAATHRELVRKIRQQVFFGSDANEGVACAAKMNMIVAG-------DGHSNIQPENS 165

Query: 282 LSKDLFTGKRFH-------YCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKI 331
           L++   T K ++       + L+NPPFG        DKD          +G+F     + 
Sbjct: 166 LAR---TAKNWNIQDSDCDFILTNPPFGTSESGALSDKD----------MGQFEV---QT 209

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + G +LFL     K+ L    GG    V+    L    A    + IR+WLL    + A+V
Sbjct: 210 TKGQLLFL----QKMVLSARRGGEICTVIDEGVLNTDTA----APIRKWLLSKAKLLAVV 261

Query: 392 ALPTDLFFRTN 402
            LP D  FR N
Sbjct: 262 RLP-DETFRPN 271


>gi|99078516|ref|YP_611774.1| N-6 DNA methylase [Ruegeria sp. TM1040]
 gi|99035654|gb|ABF62512.1| Type I restriction enzyme EcoEI M protein [Ruegeria sp. TM1040]
          Length = 524

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 42/249 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  S    G   F TPR ++ L   L+          +P    T+ DP  GT
Sbjct: 162 DVYEYMLGKIASAGQNG--QFRTPRHIIELMVRLM----------APTPKDTICDPAAGT 209

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A   + +        P         + HG + +P    +    M++  +E+   
Sbjct: 210 CGFLVTAGEFLRETHPEMLRNPEQRQHFHNSMFHGFDFDPTMLRIGSMNMVLHGVEN--- 266

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            D++           D  T   +   L+NPPF      D DA  K+ +          + 
Sbjct: 267 ADVAYRDSLAEEHGADTGT---YSLILANPPFAGSL--DYDATAKDLQK---------VV 312

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL      +      GGRAA+V+    LF   +     +IRR ++E+  ++A
Sbjct: 313 KTKKTELLFLALFLRLMRT----GGRAAVVVPEGVLFG--SSKAHKDIRRIIVEDQKLDA 366

Query: 390 IVALPTDLF 398
           I+ LP+ +F
Sbjct: 367 IIKLPSGVF 375


>gi|297561676|ref|YP_003680650.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846124|gb|ADH68144.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 626

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 36/225 (16%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G   ++ DP CGTG  L+ A+   A           L   GQ+ +P+   +  A +++  
Sbjct: 168 GAGSSVLDPACGTGVLLSAALRRGA-----------LTVFGQDRDPDALDIATALLVVPH 216

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S           +G +L    F   R    L +PPF  +    +D V+         R
Sbjct: 217 GVS--------ATAKGDSLRSPAFESSRVDVVLCDPPFRDREWGYEDLVDDP-------R 261

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +  GLP   +G + ++ H  +++      GGRA ++L +S  +      G   IR  LL 
Sbjct: 262 WVHGLPPRGEGELAWVQHCLSRV----RPGGRAVVLLPASVAYR----PGGRRIRANLLR 313

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           +  + A++ +P           ++W+L   +     G   L+ A+
Sbjct: 314 SGALRAVLEVPGGAG--AEPGRHVWVLVRPEESHGTGDGVLLVAS 356


>gi|313669543|ref|YP_004049968.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156740|gb|ADR35415.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 597

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 47/236 (19%)

Query: 288 TGKRFHYCLSNPPFGK----------KWEKDK--DAVEKEHKNGELGRFGPGLPKISDGS 335
           T  +F   ++ PPFG           +W++ +  D +    +NGE+      L + +   
Sbjct: 212 TLNQFDVSVAIPPFGGIKAEKEIANIRWDRYRVADTLNGSSRNGEIALIEHTLSQTT--- 268

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
                             GRA  V+S   LF   A   +  IR  LL N  IEA++ LP 
Sbjct: 269 ------------------GRAIFVISHGLLFRSAA---DWMIREQLLANKQIEAVITLPG 307

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF  + I T + IL+N+ + +    V  I+A+ +   ++  GKK  + + +   Q+L+ 
Sbjct: 308 NLFIHSVIPTAILILNNQCSYQ---DVLFIDASKM---VKRVGKKNVLTDLETILQLLEK 361

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPL 510
             S E  + S ++ Y+     +   L P R    +D   +   LEA  T  KLS L
Sbjct: 362 RESVE--EVSALVSYKELNANQ-NSLNPSRYIVSVDDQNIQNILEAHDT-EKLSNL 413


>gi|119356950|ref|YP_911594.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354299|gb|ABL65170.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 553

 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 105/271 (38%), Gaps = 64/271 (23%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    S    G   F TPR ++ +   L+           P +  T+ DP 
Sbjct: 170 IQGDVYEFLLSEIASAGKNG--QFRTPRHIIKMMADLV----------EPKLGHTIADPA 217

Query: 214 CGTGGFLTDAMNH--------------VAD----------CGSHHKIPPIL--VPHGQEL 247
           CGTGGFL  A  +              VAD           G   +   IL     G ++
Sbjct: 218 CGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSAGLTEQAKNILGRTLFGYDI 277

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  +++  ++ +P  D         TLSK       +   ++NPPF      
Sbjct: 278 DSTMVRLALMNLMMHGID-EPEIDYK------DTLSKSFTEESCYDIIMANPPF------ 324

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
              +++K   N             +   +LF+ ++   L+     GG A +++    LF 
Sbjct: 325 -TGSIDKSDINESFTL------STTKTELLFVENIYRLLK----KGGTACVIVPQGVLFG 373

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +G     +R+ L+E   ++A++ +P+ +F
Sbjct: 374 --SGGAFKALRKLLVERCDLKAVITMPSGVF 402


>gi|84387340|ref|ZP_00990360.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
 gi|84377789|gb|EAP94652.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
          Length = 1303

 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 28/215 (13%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ DP  G G FL  A N +    +H          G +L  +  A+ +A M+   L   
Sbjct: 175 TILDPCAGEGSFLIAAHNAIE--AAHTDFLSQTSFTGYDLSED--AILIA-MVRFFLSGA 229

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGP 326
               LS+      +  +D     ++   L+ PP G K +  +  + EK+           
Sbjct: 230 FNFHLSRRSGLYESYGRD--QHPKYDVVLAQPPVGIKRDDYRHLSYEKQ----------- 276

Query: 327 GLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             P I+ D  ++F+      L+L    GGRA I +    LF G+ GS + E+RR+L+E+ 
Sbjct: 277 -FPVITNDIVVMFIQQALFSLKL----GGRAIIAIPEGLLF-GKNGS-QIELRRYLVEHG 329

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR 419
            IEA+V +P  +    + I   L +LSN K   R+
Sbjct: 330 YIEAVVRIPPKMLIEDSGIRGALLLLSNSKKRNRK 364


>gi|222444445|ref|ZP_03606960.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434010|gb|EEE41175.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii
          DSM 2375]
          Length = 101

 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 12 ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
          ANFIW  A+  L G +K  D+ KVILPFT+L+R +  L  ++ AV + Y
Sbjct: 8  ANFIWSIADSILRGYYKRNDYQKVILPFTVLKRFDSVLPYSKDAVVQAY 56


>gi|225573238|ref|ZP_03781993.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039370|gb|EEG49616.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM
           10507]
          Length = 927

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 147/377 (38%), Gaps = 89/377 (23%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I     G+ L  +      + + YE L+    S +   +  F TPR++V  A  ++    
Sbjct: 330 IVSILQGLSLTDEETNTDALGDAYEVLL---PSTLKGESGQFFTPREIVRFAIEVI---- 382

Query: 196 DALFKESPGMIRTLY--DPTCGTGGFLTDAMNHV--------ADCG-SHHKIPPILVPH- 243
                 +P   +  Y  D  CG+ GFL+ A+ ++        A+ G S  K   +L  + 
Sbjct: 383 ------APNYSKKEYILDTACGSAGFLSVALENIRKQINTLYANRGFSKEKKRGMLKDYA 436

Query: 244 -----GQELEPETHAVCVAGM-----------------LIRRLESDPRRDLSKNIQQGST 281
                G +++P  + +  + M                 L  RL+ + RR    ++ +GS 
Sbjct: 437 GKYVFGCDIDPLLYRISKSYMAIMGEGKGNIYNLDSLDLTNRLDPNFRR----SVTEGSV 492

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---MLF 338
              D+ T        +NPPFG + +  +  V + +  G     G    ++ +G     LF
Sbjct: 493 ---DIIT--------TNPPFGTQIKDTRRDVLRTYDLGHKIINGEPTNEVLEGQDPDKLF 541

Query: 339 LMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L    + L+   N   GGR  IVL    L   +  S   E R+WLL+   I AIV LP +
Sbjct: 542 LERDISYLKEATNDADGGRMVIVLPKQNLSGAKEES--VEFRKWLLKRVQITAIVDLPRE 599

Query: 397 LFF-RTNIATYLWILSNRKT----------------EERRGKVQLINATDLWTSIRNEGK 439
            F   T   T L  L   +                  +RRG + L       T +RN+  
Sbjct: 600 AFQPHTGTKTSLVFLKKVRNIPDNYPIFMAVSEAVGHDRRG-LPLYKKDSNGTDLRNDKN 658

Query: 440 KRRIINDDQRRQILDIY 456
           +R I ND    +ILD Y
Sbjct: 659 ERVIWND--LPEILDRY 673


>gi|48243647|gb|AAT40788.1| putative type I restriction/modification methyltransferase
           [Haemophilus influenzae]
          Length = 167

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           + E EIR+ ++  DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A
Sbjct: 4   NNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDA 57


>gi|182419440|ref|ZP_02950692.1| N-6 DNA methylase [Clostridium butyricum 5521]
 gi|237666688|ref|ZP_04526673.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376771|gb|EDT74343.1| N-6 DNA methylase [Clostridium butyricum 5521]
 gi|237657887|gb|EEP55442.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 28/210 (13%)

Query: 207 RTLYDPTCGTGGFLTDAM-NHVADC------GSHHKIPPILVP---HGQELEPETHAVCV 256
           + + D TCG+G FL  AM   +ADC          K+  I+     +G E+E + + +  
Sbjct: 316 KVVLDATCGSGSFLVQAMVKELADCRRGKTEDETKKLQKIVKEEHIYGIEVEEKAYGLAT 375

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             MLI         D + NI+  S    +D          L NPP+  K       + K+
Sbjct: 376 TNMLIHG-------DGNSNIKFKSCFDCEDFIKQANPDVILMNPPYNAK----PIGIPKK 424

Query: 316 HKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           +K     +   G    + G +   FL  +  K+        +    +  + L    A  G
Sbjct: 425 YKTNWTAKAKDGKEDPTKGLVFIHFLSDVIQKMNEEREQNNQPKKTVKLAVLLPVSAAIG 484

Query: 374 ESEI----RRWLLENDLIEAIVALPTDLFF 399
            S I    +  +LEN+ +EA+  LP ++F+
Sbjct: 485 TSSIITDEKIAMLENNTLEAVFTLPNEIFY 514


>gi|307638192|gb|ADN80642.1| type I restriction-modification system DNA-methyl transferase
           subunit M [Helicobacter pylori 908]
 gi|325998379|gb|ADZ50587.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           2017]
          Length = 506

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L   
Sbjct: 12  GKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIVLDKE 68

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               R+G V +I+A+      + +G K R+ + D ++ I      +E   +S+M+
Sbjct: 69  NAHARKG-VFMIDAS---KDFKKDGNKNRLRDQDVQKMIDTFNAYKEIPYYSKMV 119


>gi|297157211|gb|ADI06923.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           ++  G +L  D F G      L NPP+G + W  D  A ++        R+  G+P   +
Sbjct: 253 SVHTGDSLRSDAFKGLTADAVLCNPPYGVRDWGHDDLAYDQ--------RWAYGVPPKGE 304

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + ++ H    L   P G    A++L    +    AG     IR  L+ +  + A+V+L
Sbjct: 305 PELAWVQHCLAHLT--PRG---RAVLLMPPAVAERTAGR---RIRAQLVRDGALRAVVSL 356

Query: 394 PTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINA 427
           P       +I  +LW+L     + E  G V L++A
Sbjct: 357 PQGAATPLHIGLHLWVLERPDPQAEAPGTVLLVDA 391


>gi|322513898|ref|ZP_08066976.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976]
 gi|322120267|gb|EFX92217.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976]
          Length = 595

 Score = 46.6 bits (109), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 50/236 (21%)

Query: 209 LYDPTCGTGGFLTDAM-NHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRR 263
           + D TCG+GGFL  AM N + + G  + I    +      G E + E  A+  A MLI +
Sbjct: 303 VLDATCGSGGFLVKAMANMIKEVGGINTIEAENIKKYQLFGIEFDREIFALACANMLIHK 362

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              D + +L + +    T + +    K     L N P+ +K+                  
Sbjct: 363 ---DGKTNLEQ-LDTRETQACEWIKSKPITKVLMNTPYERKY------------------ 400

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G  KI          + N LE  P  G + A +L    L   + G         LL+
Sbjct: 401 ---GCKKI----------VENVLENVP-IGTKCAFILPDKKLEKDKMGG--------LLK 438

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
              +E+I+ LP  L F   + T +++    K ++ R         D    ++N+G+
Sbjct: 439 KHTLESIIKLPESL-FDAGVTTSVFVFETGKPQKERKIFACYMEDDGLERVKNQGR 493


>gi|323481372|gb|ADX80811.1| Type I restriction modification system protein HsdMI [Enterococcus
           faecalis 62]
          Length = 181

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 10/105 (9%)

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L  +K  
Sbjct: 2   AIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVL--KKNR 56

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + R  V  I+A+  +   +N+ K    ++++  ++IL+ Y  R++
Sbjct: 57  QNRD-VLFIDASREFVKGKNQNK----LSEENIQKILENYAERKD 96


>gi|225568966|ref|ZP_03777991.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM
           15053]
 gi|225162465|gb|EEG75084.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM
           15053]
          Length = 621

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  GRAA++ +S  L        E  +R  ++ +D +EA++ LP++L+ R  I T L I 
Sbjct: 284 NVKGRAAVLATSGALIR----LNEKGLREQIVLSDWLEAVITLPSNLYPRMGIGTELLIF 339

Query: 411 SNRKTEERRGKVQLINATDLW 431
           +  K  ERR K+  I+ +  +
Sbjct: 340 NKNKRPERREKILFIDISSYY 360


>gi|225619645|ref|YP_002720902.1| Modification methylase [Brachyspira hyodysenteriae WA1]
 gi|225214464|gb|ACN83198.1| Modification methylase [Brachyspira hyodysenteriae WA1]
          Length = 406

 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 49/255 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP+ +  L    L+        E    ++ L DP CG+G FL         C  + KI
Sbjct: 27  YFTPKSIRDLLLKELV-----YISEKKDNVKIL-DPACGSGEFL-------LSCNEYFKI 73

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           P +   +G +++     V ++  LI+          + +I+   +L  D     ++ Y +
Sbjct: 74  PKL---YGFDIDES--LVSISKKLIK----------NADIKCLDSLKLDTKKSIKYDYVI 118

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  +++ DK+ ++K+H +   GR             +F + +   LEL  +GG  A
Sbjct: 119 GNPPYF-EFKPDKE-LKKKHNDIISGRVN-----------IFSIFIKLGLELLEDGGYLA 165

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFRTNIATYLWILSNRKT 415
            +V    P  N   G+  S++R +++    +E + +   +D F+  N    L IL  +KT
Sbjct: 166 YVV---PPSMNN--GAFFSKLREYIMNISSVEYLHIVDGSDNFYMANQKVMLLIL--KKT 218

Query: 416 EERRGKVQLINATDL 430
              + K  + +  D+
Sbjct: 219 NSHKNKKYIFSKNDI 233


>gi|288802385|ref|ZP_06407825.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica D18]
 gi|288335352|gb|EFC73787.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica D18]
          Length = 677

 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 117/321 (36%), Gaps = 95/321 (29%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++   GS +     +F TPR+V+ +A A++          +P     + D +CGTGG
Sbjct: 295 YEEIV---GSNLRGDRGEFFTPRNVMQMAVAMI----------APQEGEKVLDSSCGTGG 341

Query: 219 FLTDAMNHV---------ADCGSH-HKIPPILVPH--------------GQELEPETHAV 254
           F+  AMN V          D G +    PP++                 G ++ P+    
Sbjct: 342 FVVTAMNAVIATIKSKMQKDYGENLEDWPPVVRDAFNNKITEIAGENFFGFDINPDLVKA 401

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTL---------SKDLF---------------TGK 290
               M++         D S NI Q ++L          K L                T  
Sbjct: 402 TKMNMVM-------NNDGSGNIIQLNSLLPPHEWSEEKKQLLEERMGRPKNSIVNHKTID 454

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL--EL 348
            F   ++NPPFG K   +   +        L +F      + D    +LM+ + KL   +
Sbjct: 455 LFDVIVTNPPFGSKIPINDQQI--------LEQFDLAHSWVKDQHGNWLMN-STKLRGSV 505

Query: 349 PPNG------------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           PP              GGRAAIVL  S      +  G   IR WL+ +  I A + L  D
Sbjct: 506 PPEQIFIERIVQLLRPGGRAAIVLPDSIF----SSPGLEFIRVWLMRHTHIIASIDLHAD 561

Query: 397 LFFRTNIATYLWILSNRKTEE 417
            F   N      +   +KT E
Sbjct: 562 TFQPHNGTQCSILFVVKKTTE 582


>gi|111219762|ref|YP_710556.1| putative type I restriction system adenine methylase [Frankia alni
           ACN14a]
 gi|111147294|emb|CAJ58942.1| putative type I restriction system adenine methylase [Frankia alni
           ACN14a]
          Length = 712

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 37/204 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ D  CG GG L  A           ++  +    GQ+++P    +  AG+L+   ++ 
Sbjct: 206 TVLDSACGVGGLLEAA-----------RVAGVRRLLGQDVDPTAARITGAGLLLHGADA- 253

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   I    +L  D F G +    L  PP G++     + V+          +G G
Sbjct: 254 -------RIVAADSLLADAFVGGQADVVLCGPPSGQRAWPHDELVDSPW-------WGYG 299

Query: 328 LPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           +P   +  + ++ H LA+        G R A VL   P       +G   IR  LL    
Sbjct: 300 VPPRGEPELAWVQHCLAH--------GRRGAPVLVLMPAAAASRPAGR-RIRANLLRAGA 350

Query: 387 IEAIVALPTDLFFRTNIATYLWIL 410
           + A++ LP DLF     A  LW+L
Sbjct: 351 LRAVLGLPLDLFG-AGSAPDLWVL 373


>gi|327404935|ref|YP_004345773.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327320443|gb|AEA44935.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 671

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 144/383 (37%), Gaps = 88/383 (22%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +   E FD + +IA  +K GL + I    +       ++  + M+  YE ++    + 
Sbjct: 266 NDQVFSEVFDGNESIALTDK-GLAF-IAGELAKYSFLDASIDVKGMA--YETIV---SNT 318

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           + + A  F TPR++V  A   +LDP +            + DP CG+GGFL   ++HV  
Sbjct: 319 LKQEAGQFFTPRNIVK-AMVEMLDPTET---------DRVLDPACGSGGFLVMVLDHVRK 368

Query: 230 CGSHHKIP----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK----------- 274
             +    P    P+L       E        A   I   + DP  DL K           
Sbjct: 369 KITEQMFPDLDGPLLAEKYNTYEVNEKVREYAENNIFGFDFDP--DLKKAARMNMVMAGD 426

Query: 275 ---NIQQGSTLS-------------------------KDLFTGK----RFHYCLSNPPFG 302
              NI   ++L+                          DL  G     +F    +NPPFG
Sbjct: 427 GHANIFHVNSLAYPNWEHPAEIEKINMSINNSLRNMKDDLSYGSDARGKFDVIFTNPPFG 486

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLS 361
            K + +++   +             L K SD   +LF+    + L+     GG+ AIVL 
Sbjct: 487 AKVKVEQEIASRYF-----------LSKYSDAPEVLFIEACYDFLK----EGGKMAIVLP 531

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420
              L N         +R W+LE   I A + L  + F  +  +   L  L  +   ER  
Sbjct: 532 DGILGNPNT----IHVREWILEKFKILASIDLAVEAFLPQVGVQASLLFLQKKSELERNL 587

Query: 421 KVQLINATDLWTSIRNE-GKKRR 442
            +   +  +++ +I  + GK RR
Sbjct: 588 ALDGDDDYNVFMAIAEKLGKDRR 610


>gi|72160665|ref|YP_288322.1| hypothetical protein Tfu_0261 [Thermobifida fusca YX]
 gi|71914397|gb|AAZ54299.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 680

 Score = 45.8 bits (107), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 36/224 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP+CG+G  L     H           P +  +GQ+++P    +    + +   ++D
Sbjct: 199 TVFDPSCGSGTLLHAMARHA----------PGVTLYGQDIDPAAARLARVRLQLAGADAD 248

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP 326
                   I+ G +L  D F G      + +PPF +  W  ++ + +   + G   R  P
Sbjct: 249 --------IRVGDSLRADAFPGLAADTVVLHPPFNQTDWGFEELSFDSRWRYGTPARKEP 300

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L  +       L H+          GG A +VL  +    G       E+    L    
Sbjct: 301 ELAWVQHA----LAHV--------RPGGTAIVVLPPAVASRGSGRRVRREL----LRRGA 344

Query: 387 IEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATD 429
           + A++ALPT L         LWIL N   + +  GKV L +A+D
Sbjct: 345 LRAVIALPTGLATPMGTPLTLWILRNPEDSTDLPGKVLLFDASD 388


>gi|255658632|ref|ZP_05404041.1| type I restriction-modification system, M subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849006|gb|EEX69013.1| type I restriction-modification system, M subunit [Mitsuokella
           multacida DSM 20544]
          Length = 490

 Score = 45.8 bits (107), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 122/291 (41%), Gaps = 57/291 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           F  T   ++   LL ++      I+L   D +    + +IYE +++   S    G  +F 
Sbjct: 114 FEETNQYMKDGVLLRQVINVIDDIDLESYDNM--HALGDIYETILKELQSAGRAG--EFY 169

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------ 232
           TPR V    T  + D      +  P +   + D  CGTGGFL   +  +    +      
Sbjct: 170 TPRAV----TDFMAD------RIEPHLGERMADFACGTGGFLVSWLRELEKQIAAPDDRA 219

Query: 233 --HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FT 288
             +H +      +G E +   + + +  +L+  ++       + +I  G++L  D+  +T
Sbjct: 220 LWNHSV------YGIEKKQFPYMLAITNLLLHGVD-------NPDIDHGNSLLHDVLDYT 266

Query: 289 GK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            K +F   L NPP+G   +KD            +  F   L   S+ + LF+  +  +L+
Sbjct: 267 EKDKFDKILMNPPYGGSEKKDV-----------MSHFPDDLAD-SETADLFMSVILYRLK 314

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                GGRAA+VL    LF     + +  I++ L+    +  IV LP  +F
Sbjct: 315 ----QGGRAAVVLPDGFLFG--TDNTKVNIKKKLMAECDLHTIVRLPGSVF 359


>gi|154175026|ref|YP_001408735.1| Sec-independent protein translocase protein TatC [Campylobacter
           curvus 525.92]
 gi|153793168|gb|EAT99402.2| Sec-independent protein translocase protein TatC [Campylobacter
           curvus 525.92]
          Length = 489

 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 51/291 (17%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           K G+L +   N    EL+ +   +R     IYE +++   S  + G  +F TPR V    
Sbjct: 121 KDGVLLRQVINVIN-ELNFENFKERHAFGEIYETILKSLQSAGNAG--EFYTPRAVTDFM 177

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHG 244
             ++           P +   + D  CGTGGFLT A+  +          +I    V +G
Sbjct: 178 AKMI----------KPKIGERVADFACGTGGFLTSALKELDSQIQTADEREIYKDSV-YG 226

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPF 301
            E +     +    +L+  ++ +P+      I   + L KD+       +F   L NPP+
Sbjct: 227 IEKKALPFLLSATNLLLHDID-NPQ------IYHDNALEKDIRDYAPEDKFDVILMNPPY 279

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G     +KD ++            P   + S+ + LF+  +  +L+      GRAA++L 
Sbjct: 280 GG---SEKDNIKSNF---------PIELRSSETADLFMNVIMARLKFK----GRAAVILP 323

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
              LF     + +  I+  LL    +  IV LP  +F     A Y  I +N
Sbjct: 324 DGFLFG--TDNAKVAIKTKLLNEFNLHTIVRLPRSVF-----APYTSITTN 367


>gi|257064729|ref|YP_003144401.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792382|gb|ACV23052.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 654

 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 150/447 (33%), Gaps = 117/447 (26%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY TS+   S  G    +  + +           IF++      +  L    L Y I   
Sbjct: 218 FYATSDERGSRDGQLTVQKRVGAIFEKVKKRHGKIFDE----DAVIELTPRSLAY-IVSE 272

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             G  L    +   +    YE ++   G+ +      F TPR+V+ +   +L DP D   
Sbjct: 273 LQGYSLLNTNID--IKGKAYEEIV---GANLRGDRGQFFTPRNVMKMVVEML-DPTDE-- 324

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    + D +CGTGGF+  AM HV       +I   LV    E  P         M
Sbjct: 325 -------ERVADTSCGTGGFIVMAMTHVM-----QRIEAELV---DEFGPREDWGVDETM 369

Query: 260 LIRRLESDPR----------RDLSK--------------NIQQGSTL------------- 282
             +   SD            RDL+K              NI Q ++L             
Sbjct: 370 AFQERVSDVASRNFFGFDIDRDLAKATKMNMVMNNDGSGNIMQTNSLLPPHEWDMDFKSR 429

Query: 283 --------SKDLFTGKR---FHYCLSNPPFGKK-----------------WEKDKDAVEK 314
                    K L   K    F   ++NPPFG K                 WE DK     
Sbjct: 430 LAKAIGRDPKSLVNWKSLAMFDVIVTNPPFGTKIPIKDTSILGQFELAHIWECDKTT--- 486

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             K     R    +P      +LF+      L      GGR  IVL  S L  G  G G 
Sbjct: 487 -GKWTMTDRLQSSVPP----EILFVERCTQFLV----EGGRMGIVLPDSIL--GSPGLG- 534

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTN-IATYLWILSNRKTEERRGKVQLINATD---L 430
             IR WL+ N  I A + +  D F   N + T + IL  +   E+  + +  +  D    
Sbjct: 535 -YIREWLIANHRIVASLDMHQDTFQPHNGVQTSVLILQKKSQAEKDAEAKTRHVADYDIF 593

Query: 431 WTSIRNEGKKRR----IINDDQRRQIL 453
              + + G  +R     + DD   ++L
Sbjct: 594 MAMVEHVGHDKRGNPIFVRDDDGNEVL 620


>gi|258627227|ref|ZP_05722015.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio mimicus VM603]
 gi|258580529|gb|EEW05490.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio mimicus VM603]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 39/243 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R     + L  GG    +E+FV 
Sbjct: 16  LWDTATQLRGSVESSEYKHVVLSLVFLKFISDKFEAKR-----QQLIDGG----MEAFVD 66

Query: 75  VAGY----SFYNTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAI---FEDFDFSS 122
           +  +    + +   EY+  +      + +     ++S + +     KA+    +D  FS 
Sbjct: 67  MPEFYQQDNVFFLEEYARWSFVKARAKQDDIALIIDSALKAIEGKNKALEGALQDNYFSH 126

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN------IYEHLIRRFGSEVSEGAED 176
                +K   L    +N     +H ++  +  MS       +Y++ + RF +   +   +
Sbjct: 127 MGLETQKLASLIDAIENIDTY-VHEESANECDMSEEDLVGRVYKYFLGRFAATEGKDGGE 185

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ VV L  A +L+P              +YDP CG+GG    ++  V       K 
Sbjct: 186 FYTPKSVVTL-LAEMLEPFQG----------KIYDPCCGSGGMFVQSLKFVESHQGRVKT 234

Query: 237 PPI 239
            P 
Sbjct: 235 SPF 237


>gi|270284038|ref|ZP_06193809.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
 gi|270277980|gb|EFA23834.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
          Length = 185

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 207 RTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           R L DPTCGT GFL  AM+ +   AD  +  K       HG EL+    AV  A M++  
Sbjct: 48  RVLLDPTCGTAGFLISAMHRMLTLADTDAQKKNIKKKQLHGFELQSNMFAVAAANMIL-- 105

Query: 264 LESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
                R+D + N++    L K+      K     L NPP+ +  + D +  E
Sbjct: 106 -----RKDGNSNLECCDFLRKNPAQVQLKGATVGLMNPPYSQGTKADPEQYE 152


>gi|78064669|ref|YP_367438.1| N-6 DNA methylase [Burkholderia sp. 383]
 gi|77965414|gb|ABB06794.1| N-6 DNA methylase [Burkholderia sp. 383]
          Length = 605

 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 147/371 (39%), Gaps = 65/371 (17%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +++I +  D+ KA   +         L KA  + ++     GI L  DT  D V+   +E
Sbjct: 216 QNFINNLFDDLKAHHPEVFTDENERVLSKAATVERVIARLEGINL-KDTQGD-VLGRAFE 273

Query: 161 HLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLD-----PDDALFKESPGMIRTLYDPT 213
            ++    S+  +G +   F TPR++V    A +LD     P+      S G      D  
Sbjct: 274 IML----SDTFKGKDLGQFFTPREIV----AFMLDLARENPEGPALDISKG--ERFLDGC 323

Query: 214 CGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQE------LEPETHAVCVAGMLIR 262
            G+GGFL  A   V        I       +L   GQE      +E +   +    M++ 
Sbjct: 324 AGSGGFLIAAYEDVYKHALSSTIRGDERENLLRRLGQETFFACEIEEKAARLGKLNMIVH 383

Query: 263 RLESDPRRDLSKN-----------------IQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            + +   + L +N                 +  G    K           L+NPPFGK  
Sbjct: 384 AVNAQNAQWLHQNYLYNEERGGLKPLIEYEVDFGEGKKKRQIGSSSIDLILTNPPFGKSV 443

Query: 306 EKDKDAVEKEHKNGELGRF-GPGLP------KISDGSMLFLMHLANKLELPPNGGGRAAI 358
           + +   ++ +  + E+  F   G P         D  +LF+ H    L+     GG+  I
Sbjct: 444 KTENVLLDYQFGH-EVKTFKSAGRPPEKRAKNSQDSEVLFIEHYLRTLK----PGGKLLI 498

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTE 416
           VL    L N  A      +R ++ E+ +I+++++LP++ F    T+I T +  L  ++  
Sbjct: 499 VLPDGVLSNATA----KPVRDYIREHAIIKSVISLPSETFASTGTSIPTNVVFLQKKRPG 554

Query: 417 ERRGKVQLINA 427
           + +G + +  A
Sbjct: 555 DVQGDIFMARA 565


>gi|148927590|ref|ZP_01811061.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147887066|gb|EDK72563.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 330

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 13/101 (12%)

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+  + F+ H+ ++L++     G+AA+++  + LF G  G+GE+ IR+ LL+   I  I+
Sbjct: 159 SNKQLNFVQHICSQLKV----DGKAAVIVPDNVLFEG--GAGET-IRKKLLQTTEIHTIL 211

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            LPT +F+   +   +    NR   +       +   D+W 
Sbjct: 212 RLPTGIFYANGVKANVIFFDNRPASKE------VQTKDVWV 246


>gi|86152172|ref|ZP_01070384.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840957|gb|EAQ58207.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 43

 Score = 45.4 bits (106), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 31/42 (73%)

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +GYEI F+++FY Y P RKL++I+ EL+ +E ++  LL E+ 
Sbjct: 1   MGYEILFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 42


>gi|304389844|ref|ZP_07371803.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327020|gb|EFL94259.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 56/229 (24%)

Query: 243 HGQELEPETHAVCVAGMLIRR-----LE-SDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYC 295
           HG EL+    AV  A M++R+     LE  D  R  +  +Q +G+T+             
Sbjct: 27  HGFELQSNMFAVAAANMILRKDGNSNLECCDFLRKNTAQVQLKGATVG------------ 74

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L NPP+ +  + D +  E                      + F+ HL + L +    G R
Sbjct: 75  LMNPPYSQGTKADTEQHE----------------------LSFIEHLLDSLTV----GAR 108

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+++  S +  G++   E + +  +L+   +E ++   ++ F+   +   + I +  + 
Sbjct: 109 AAVIVPQSSM-TGKS-KAEKQFKNSILDKHTLEGVITCNSETFYGVGVNPVIAIFTANEK 166

Query: 416 EERRGKVQLINATDLWTSIRN-----EGKKRRIINDDQRRQILDIYVSR 459
            ++R   + I+  D    +R      EG   +    D+R+ +LD++  R
Sbjct: 167 HDKRKVCKFIDFRDDGYEVRAHVGLLEGDSAK----DKRQHLLDVWFGR 211


>gi|308272576|emb|CBX29180.1| hypothetical protein N47_J01610 [uncultured Desulfobacterium sp.]
          Length = 226

 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   IYE L+ +   +   GA  + TPR ++    A +           P  ++++ DP 
Sbjct: 130 IKGKIYEGLLEKNAEDTKSGAGQYFTPRALIKAMVACV----------QPQPMKSIADPA 179

Query: 214 CGTGGFLTDAMNHVAD 229
           CGTGGF   A +++++
Sbjct: 180 CGTGGFFLAAYDYISN 195


>gi|289765284|ref|ZP_06524662.1| type I restriction-modification system [Fusobacterium sp. D11]
 gi|289716839|gb|EFD80851.1| type I restriction-modification system [Fusobacterium sp. D11]
          Length = 601

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 128/323 (39%), Gaps = 50/323 (15%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-RRF 166
           ++N ++I E+ D +S   + E    L KI K    I    D +P  +   +YE L  ++ 
Sbjct: 72  TENNESIKEEIDKNSNKKKNE--STLMKIHKAIEEINSTND-LPIDLFGEVYECLASKKT 128

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S + E    F T R ++     +     D         I    DP CGTGGFLT++  +
Sbjct: 129 KSMLGE----FFTRRHIIKAIVRMFFSSKDIKDIIKYKKIIV--DPACGTGGFLTESFKY 182

Query: 227 VAD-CGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQ 277
           + + C    K+    +         G ++   +       M+   L  D   D+ + N  
Sbjct: 183 IKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMI---LTGDGFSDIDRYNTL 239

Query: 278 QGSTLSKDLFTG--KRFHYCLSNPPFGKK----WEKDKDAVEKEHKNGELGRFGPGLPKI 331
           Q +  ++   +G  K   Y L+N P+G+       K+ D   K +KN  L          
Sbjct: 240 QANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFIKNNKNKRL---------- 289

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               + F++ +   L+     GGRA+I+L    L         S  R +LL    IE I+
Sbjct: 290 ---ELNFVLKIIEMLK----EGGRASIILPEGLL----EAPTLSNFRDYLLRQCKIETII 338

Query: 392 ALPTDLFF-RTNIATYLWILSNR 413
           +LP   F   T   TY+  L  R
Sbjct: 339 SLPKFAFAPYTKWKTYVIFLEKR 361


>gi|288573765|ref|ZP_06392122.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569506|gb|EFC91063.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+ + RF +   +G  +F TPR VV L   ++           P   R +YDP 
Sbjct: 158 VLGRVYEYFLGRFAAAEGKGGGEFYTPRCVVKLLVGMI----------EPYKGR-VYDPC 206

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
           CG+GG    +   V + G   ++  I + +GQE
Sbjct: 207 CGSGGMFVQSERFVEERGG--RLGDIAI-YGQE 236


>gi|194336531|ref|YP_002018325.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309008|gb|ACF43708.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 553

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 105/271 (38%), Gaps = 64/271 (23%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    S    G   F TPR ++ +   L+           P +  T+ DP 
Sbjct: 170 IQGDVYEFLLSEIASAGKNG--QFRTPRHIIKMMADLV----------EPKLGHTIADPA 217

Query: 214 CGTGGFLTDAMNH--------------VAD----------CGSHHKIPPIL--VPHGQEL 247
           CGTGGFL  A  +              VAD           G   +   IL     G ++
Sbjct: 218 CGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSVGLTEQAKSILGKTLFGYDI 277

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  +++  ++ +P  D         TLSK       +   ++NPPF      
Sbjct: 278 DSTMVRLALMNLMMHGID-EPEIDYK------DTLSKSFTEESCYDIIMANPPF------ 324

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
              +++K   N             +   +LF+ ++   L+     GG A +++    LF 
Sbjct: 325 -TGSIDKGDINESFTL------STTKTELLFVENIYRLLK----KGGTACVIVPQGVLFG 373

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +G     +R+ L++   ++A++ +P+ +F
Sbjct: 374 --SGGAFKALRKLLVDRCDLKAVITMPSGVF 402


>gi|315222592|ref|ZP_07864481.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211]
 gi|315188278|gb|EFU22004.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211]
          Length = 548

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  + ++ S +++        VM + YE+LI++F     + A ++ TPR +V L   +L+
Sbjct: 441 LKDLIEHMSSLKVGNKNYSADVMGDAYEYLIKKFADLSKKNAGEYYTPRTIVKL-MVMLM 499

Query: 193 DPDDALFKESPGMIRTLYDPTCG 215
           DP        PG   T+YDP CG
Sbjct: 500 DP-------KPG--DTVYDPACG 513


>gi|269929053|ref|YP_003321374.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
 gi|269788410|gb|ACZ40552.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
          Length = 752

 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 95/260 (36%), Gaps = 57/260 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +YE   R  G         + TPR +  +   L         + +P  +  + DP C
Sbjct: 249 LGQLYETFFRYTGGNT---IGQYFTPRHIARMMADLC--------ESTPSDV--VIDPAC 295

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPRR 270
           GTGGFL  AM    D  S      I +      G E EP T A+ VA ML+       R 
Sbjct: 296 GTGGFLIAAMQRAYDQSSLRYEDAIELVREKLIGYESEPVTAALAVANMLL-------RG 348

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           D    I++    +   +        L NPPF  K    K  V  E               
Sbjct: 349 DGKTGIRKEDCFTATDYPVNACDIALMNPPFPHK----KTDVPPER-------------- 390

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+      L L     GR A++L +S L   +  +G    R+ +L ++ +  +
Sbjct: 391 -------FVERALEALRL----RGRIAVILPTS-LTVKKENAG---WRKQILTHNTLLGV 435

Query: 391 VALPTDLFFRTNIATYLWIL 410
           V LP +LF     AT   +L
Sbjct: 436 VQLPDELFQPYASATTTVVL 455


>gi|256027310|ref|ZP_05441144.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. D11]
          Length = 834

 Score = 45.1 bits (105), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 128/323 (39%), Gaps = 50/323 (15%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-RRF 166
           ++N ++I E+ D +S   + E    L KI K    I    D +P  +   +YE L  ++ 
Sbjct: 305 TENNESIKEEIDKNSNKKKNEST--LMKIHKAIEEINSTND-LPIDLFGEVYECLASKKT 361

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S + E    F T R ++     +     D         I    DP CGTGGFLT++  +
Sbjct: 362 KSMLGE----FFTRRHIIKAIVRMFFSSKDIKDIIKYKKIIV--DPACGTGGFLTESFKY 415

Query: 227 VAD-CGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQ 277
           + + C    K+    +         G ++   +       M+   L  D   D+ + N  
Sbjct: 416 IKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMI---LTGDGFSDIDRYNTL 472

Query: 278 QGSTLSKDLFTG--KRFHYCLSNPPFGKK----WEKDKDAVEKEHKNGELGRFGPGLPKI 331
           Q +  ++   +G  K   Y L+N P+G+       K+ D   K +KN  L          
Sbjct: 473 QANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFIKNNKNKRL---------- 522

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               + F++ +   L+     GGRA+I+L    L         S  R +LL    IE I+
Sbjct: 523 ---ELNFVLKIIEMLK----EGGRASIILPEGLL----EAPTLSNFRDYLLRQCKIETII 571

Query: 392 ALPTDLFF-RTNIATYLWILSNR 413
           +LP   F   T   TY+  L  R
Sbjct: 572 SLPKFAFAPYTKWKTYVIFLEKR 594


>gi|323438356|gb|EGA96133.1| hypothetical protein SAO11_2769 [Staphylococcus aureus O11]
          Length = 123

 Score = 45.1 bits (105), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  
Sbjct: 10  GQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGTTFDAVIANPPYSA 64

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           KW  D      E  +G    +G   PK S     F+ H+ + L+      G  A+VL   
Sbjct: 65  KWTADSKFENDERFSG----YGKLAPK-SKADFAFIQHMVHYLD----DEGTMAVVLPHG 115

Query: 364 PLFNGRA 370
            LF G A
Sbjct: 116 VLFRGAA 122


>gi|320536513|ref|ZP_08036543.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320146639|gb|EFW38225.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 113/292 (38%), Gaps = 59/292 (20%)

Query: 178 MTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADC 230
           +TPR +  L   L  L P+D +F           DP CGT GFL  AM+++       D 
Sbjct: 329 LTPRHITELFCNLADLKPNDKVF-----------DPCCGTAGFLIAAMHNMLLKAKTLDE 377

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +  K   +    G E++     +    M++       R D   N+     L+++ F  +
Sbjct: 378 KNDIKKKQLF---GIEIQSYMFTIATTNMIL-------RGDGKSNLYNKDFLNENPFDLQ 427

Query: 291 RFHYCLS--NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           +  Y +   NPP+ +  +++ D  E                      + F  HL N +  
Sbjct: 428 KEGYTVGMMNPPYSQGSKQNPDLYE----------------------IAFTEHLLNSV-- 463

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GG+  +++  S +  G+  + E  I+  +L+   +E ++ L  + F+       + 
Sbjct: 464 --TEGGKVIVIVPQSSM-TGKT-TEEKNIKTNILKKHTLEGVITLNKNTFYGVGTNPCIA 519

Query: 409 ILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           I +           + IN   D +   ++ G        D+++ +LD++  R
Sbjct: 520 IFTAHIPHSENKVCKFINFEDDGYEVAKHIGLVDNGSAKDKKQHLLDVWFDR 571


>gi|290956158|ref|YP_003487340.1| N-methyltransferase [Streptomyces scabiei 87.22]
 gi|260645684|emb|CBG68775.1| putative N-methyltransferase [Streptomyces scabiei 87.22]
          Length = 539

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 100/274 (36%), Gaps = 44/274 (16%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           + L  D +     + + + L  RF   V     D +T   VV              F   
Sbjct: 102 VRLARDLIGSGSTAEVVDALAERFTDSVRRAGSDQVTSPRVVRAVRR---------FAGE 152

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                TL+DP CG G  L               + P   P     E +  + C A     
Sbjct: 153 VAGDATLFDPACGIGTLLL-------------AVGPDRGPLRYGQESDARSACFA----- 194

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGEL 321
           +L +D    +  +I  G +L  DL+   +    + +PP G   W +++  ++        
Sbjct: 195 QLRADLTGRVGVDIGTGDSLRGDLWADVKADLVVCDPPVGDTDWGREELLLDS------- 247

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P  ++G + +L H         + GGR  +V+ +S  +  +AG     IR  L
Sbjct: 248 -RWEFGTPSRAEGELAWLQHAYAHT----SPGGRVLMVMPASVAYR-KAG---RRIRAEL 298

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           +   ++  + ALP        +  +LW L   +T
Sbjct: 299 VRRGILTQVTALPPGTASSHALPVHLWHLRRPRT 332


>gi|254391268|ref|ZP_05006473.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294816307|ref|ZP_06774950.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444637|ref|ZP_08219371.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197704960|gb|EDY50772.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294328906|gb|EFG10549.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 666

 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 108/275 (39%), Gaps = 58/275 (21%)

Query: 153 RVMSNIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           R +   YE L+ R+ G+ V +      TP  +  L  AL     D          RT+ D
Sbjct: 124 RGVGPTYEFLLERWLGAHVRQVT---TTPGQLAELMVALAAPSGD--------RPRTVLD 172

Query: 212 PTCGTGGFLTDAMNHVAD------CGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRR 263
           P CGTGG L  A +H +        G+   I P+L  +  G+        V  AG+    
Sbjct: 173 PACGTGGLLLTAGHHWSSRRRLDLLGA--DISPVLTRLARGR--------VATAGL---- 218

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELG 322
                 R +   I+ G TL  D++  +R    L NPP+  + W  ++ A +         
Sbjct: 219 -----PRSVRTQIRTGDTLRSDVWPEERADVVLCNPPYNTRDWGHEELATDP-------- 265

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+    P  ++  + ++ H  ++L      GG A ++L              +     LL
Sbjct: 266 RWVFAHPPRTEPELAWVQHALSRL----ADGGTAVLLLPPGVAKRRAGRRIRAG----LL 317

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
               + A++ALP       ++  +LW+L  RK  E
Sbjct: 318 RTGALRALIALPVGSAPPHSVGLHLWLL--RKPAE 350


>gi|168698328|ref|ZP_02730605.1| Type I site-specific deoxyribonuclease, methylase subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+   S     FL+H  + L+      G  AI+L    LF G A   E  IR  LL +  
Sbjct: 11  GVAPKSAADFAFLLHGLHDLK----DDGVMAIILPHGVLFRGGA---EERIRTKLLTDGH 63

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ LP +LF+ T I   + +L   K  E    V  INA + +     +GK++  +  
Sbjct: 64  IDTVIGLPPNLFYSTGIPVCVLVLKKCKKPE---DVLFINAAEHFA----KGKRQNRLEP 116

Query: 447 DQRRQILDIYVSR 459
           +   +I+  Y  R
Sbjct: 117 EHIARIIATYQDR 129


>gi|269126154|ref|YP_003299524.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268311112|gb|ACY97486.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 673

 Score = 44.7 bits (104), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 37/215 (17%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC-VAGMLIRRL 264
           I T+ DPTCG+G FL   +      G+  ++       GQ+++    AV  +  + +  L
Sbjct: 198 IETVLDPTCGSGAFLAGMLAK----GTRRRL------LGQDVD---EAVARLTAIWLALL 244

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGR 323
           ++D       +I+ G +L +D F G++    ++NP F  + W  D+   +         R
Sbjct: 245 DAD------ADIRSGDSLRRDAFPGEQADLVVANPQFNDRNWGYDELTTDP--------R 290

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +  GLP  ++  + ++ H           GG A +++  +           +     LL 
Sbjct: 291 WEYGLPPRTESELAWVQHCLAHC----RPGGLAVLLMPPAAASRRAGRRIRAN----LLR 342

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
              + A++ LP      T +   +W+L     +ER
Sbjct: 343 RGALRAVITLPLGAVPNTAVPLTVWVLRRPVPDER 377


>gi|148652933|ref|YP_001280026.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
 gi|148572017|gb|ABQ94076.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 93/244 (38%), Gaps = 35/244 (14%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + FV   G SF++  E              L +   +  +  K +F+D  F++     EK
Sbjct: 78  QRFVLPDGASFWDLYEQRHQPGNGQRIDEALHAIEEANGNKLKNVFQDISFNTDRLGNEK 137

Query: 130 AG--LLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
               LL  + ++F    + L P  V    V+ N YE LI+ F ++    A +F TP +V 
Sbjct: 138 KKNELLRHLLEDFGKPMLNLSPSRVGSLDVIGNAYEFLIKHFAADSGASAGEFYTPPEVS 197

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL--TDAMNHVADCGSHHKIPPILVP 242
            L   +L          +P     + DP CG+G  L    AM        ++++      
Sbjct: 198 SLLATIL----------NPVAGDAICDPACGSGSLLIKCGAMARKNSGSKNYEL------ 241

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH-----YCLS 297
            GQE    T A+    M +     D  R     I+ G TL   L    + H        +
Sbjct: 242 FGQEAIGSTWALAKMNMFLHG--EDNHR-----IEWGDTLRYPLLLDDKGHLLQFDVVTA 294

Query: 298 NPPF 301
           NPPF
Sbjct: 295 NPPF 298


>gi|302554826|ref|ZP_07307168.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302472444|gb|EFL35537.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 556

 Score = 44.7 bits (104), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 42/228 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP CG G  L   ++  ++ G+  +        GQE++ ++     A     R E  
Sbjct: 173 TVFDPACGIGVLL---LSVASESGARCR--------GQEMDTDS-----ARFAQLRAELL 216

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
            R ++S  +  G +L  D +   R    + +PP G  +W +++  ++         R+  
Sbjct: 217 GRSEVS--VVAGDSLRADAWPDLRADLIVCDPPAGVTEWGREQLLLDS--------RWEL 266

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P  ++G + +L H A     P   GG+  +V+ +S  +  +AG     IR  L+   +
Sbjct: 267 GTPSKAEGELAWLQH-AYAHTAP---GGQVLMVMPASVAYR-KAGR---RIRSELVRRGI 318

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-----KVQLINATD 429
           +  +VALP       ++  +LW L  R+ E   G      V++++ TD
Sbjct: 319 VRQVVALPPGTATSHSLPVHLWCL--RRPENTSGTDTHHTVRMVDLTD 364


>gi|134097473|ref|YP_001103134.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910096|emb|CAM00209.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 29/207 (14%)

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G +L  D F   R    L NPPFG + W  D  A +         R+  GLP  S+  + 
Sbjct: 19  GDSLRADAFPDTRVDTVLCNPPFGVRDWGHDDLAYDP--------RWVYGLPPRSESELA 70

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    LE     GG A +++   P       SG   +R  L+    + A++ LP   
Sbjct: 71  WVQHCLAHLE----PGGLAVVLM---PPGAAERPSGR-RVRAELIRQGALRAVIGLPPGA 122

Query: 398 FFRTNIATYLWILSNRKTEERRGK-VQLINAT----------DLWTSIRNEGKKRRIIND 446
               +++ ++W+L+        GK V  ++A+          +LW        +   + D
Sbjct: 123 APPLHLSLHIWVLTCPDEALATGKSVLFVDASSGSVSDQRIVELWRDFDEAEDRFEAVPD 182

Query: 447 -DQRRQILDIYVSRENGKFSRMLDYRT 472
             QR  I+D+  +  +   +R +  RT
Sbjct: 183 VAQRLSIVDLLDATVDVTPARRVHIRT 209


>gi|330903552|gb|EGH34124.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 143

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 94  TNTRNNLESYIASFSDNAKA---IFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPD- 148
           TN  N L   +    +N  +   + E  DF+  + + +   L L ++  +F  + L    
Sbjct: 26  TNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQSKIPDLKLRQLISHFGQVRLRNSD 85

Query: 149 -TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
              PD ++   YE+LI  F     +   +F TPR VV L   LL           P +  
Sbjct: 86  FEFPD-LLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRLMVRLL----------RPELKH 134

Query: 208 TLYDPTCGT 216
            +YDP CG+
Sbjct: 135 DIYDPCCGS 143


>gi|290959827|ref|YP_003491009.1| N-methyltransferase [Streptomyces scabiei 87.22]
 gi|260649353|emb|CBG72468.1| putative N-methyltransferase [Streptomyces scabiei 87.22]
          Length = 677

 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 34/214 (15%)

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           L  E  G  R++ DP CGTG  L     H        ++      +GQ+   E  A+   
Sbjct: 195 LMAELAGPARSVLDPACGTGALL-----HAVAARPGQEL------YGQDSSRELAALTAL 243

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEH 316
            + +    +  R         G +L  D     R    L +PPF ++ W  D+ A +   
Sbjct: 244 RLALGSGNAAVR------TAAGDSLRADAHEPLRAEAVLCHPPFNERNWGHDELAYDP-- 295

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+  G P  ++  + ++ H   +L+   +GG   A++L    + + R+G     
Sbjct: 296 ------RWEYGFPARTESELAWVQHALARLQ---DGG--TAVLLMPPAVASRRSG---RR 341

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           IR  LL    + A++ALP       NI  +LW+L
Sbjct: 342 IRADLLRRGALRAVIALPVGAAPPYNIPLHLWVL 375


>gi|296127792|ref|YP_003635044.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
 gi|296019608|gb|ADG72845.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 49/246 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP+ +  L    L+   D   K++  ++    DP CG+G F+     +  +       
Sbjct: 27  YFTPKSIRELLLKKLISISDK--KDNVKIL----DPACGSGEFILSFKEYFNN------- 73

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                PH    E +   V ++  LI   +          I+   TL  D+    ++ Y +
Sbjct: 74  -----PHLYGFEIDESLVSISKKLINNAD----------IKCIDTLKIDIEKSIKYDYVI 118

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  +++ DK+  +K++ +   GR             +F + +   LEL  +GG  A
Sbjct: 119 GNPPYF-EFKPDKET-KKKYSDIISGRVN-----------IFSIFIKLGLELLEDGGYLA 165

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFRTNIATYLWILSNRKT 415
            +V    P  N   G+  S++R +++ N  +E + +   +D F+  N    L IL  +KT
Sbjct: 166 YVV---PPSMNN--GAFFSKLREYIINNSSVEYLHIVEGSDNFYMANQKVMLLIL--KKT 218

Query: 416 EERRGK 421
              + K
Sbjct: 219 NSHKNK 224


>gi|320010361|gb|ADW05211.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 702

 Score = 44.3 bits (103), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 93/248 (37%), Gaps = 34/248 (13%)

Query: 166 FGSEVSEGAEDF-MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           FG ++      + +TP  +  L   L     D + +      RT+ DP  GTG  L    
Sbjct: 171 FGRQLDANPRQYTLTPPGLAELMADLAQPAGDTVRRGGGSDSRTVLDPAAGTGALLCAVG 230

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              A              + QE +P   A+    + +    S      +   + G TL  
Sbjct: 231 RPTAL-------------YAQEADPGLSALTALRLALHTQGSGADAP-TLTARTGDTLRT 276

Query: 285 DLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH-L 342
           D F G      L +PPF ++ W  D  A +         R+  G P  ++  + ++ H L
Sbjct: 277 DAFPGLTVDTVLCHPPFNERNWGHDDLAYDP--------RWEYGFPARTESELAWVQHAL 328

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           A+  E      G  A+VL      + R+G     IR  LL    + A++ALP        
Sbjct: 329 AHLRE------GGTAVVLMPPAAASRRSG---RRIRADLLRRGALRAVIALPAGAAPPYG 379

Query: 403 IATYLWIL 410
           I  ++W+L
Sbjct: 380 IPLHIWVL 387


>gi|256026504|ref|ZP_05440338.1| N-6 DNA methylase [Fusobacterium sp. D11]
 gi|289764516|ref|ZP_06523894.1| type I restriction modification system M subunit [Fusobacterium sp.
           D11]
 gi|289716071|gb|EFD80083.1| type I restriction modification system M subunit [Fusobacterium sp.
           D11]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 17/123 (13%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +++  +LS D      +   L+NPPF       K +V++   +  L R    + K     
Sbjct: 13  LKRIDSLSTDYSEENDYSLVLANPPF-------KGSVDESLLSNTLTR----MVKTKKTE 61

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ +EA++++P+
Sbjct: 62  LLFIALFLRLLKI----GGRGAVIVPDGVLFG--ASNAHKNLRKELIENNQLEAVISMPS 115

Query: 396 DLF 398
            +F
Sbjct: 116 GVF 118


>gi|297587713|ref|ZP_06946357.1| type I restriction-modification system [Finegoldia magna ATCC
           53516]
 gi|297574402|gb|EFH93122.1| type I restriction-modification system [Finegoldia magna ATCC
           53516]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 26/118 (22%)

Query: 109 DNAKAIFEDFDFSS-----TIARLEKAGLLYKICKNFSGIE------LHPDTVPDRVMSN 157
           D+ K +FED D +S     T+A   K     ++C   +GI+         + +      +
Sbjct: 23  DDIKGLFEDIDTTSNKLGATVAEKNK-----RLCDILTGIDKINFGKFENNDID--AFGD 75

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            YE+LI  + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG
Sbjct: 76  AYEYLISNYASNAGKSGGEFFTPQTVSKLLAKLVMDGKTSINK--------VYDPTCG 125


>gi|32477086|ref|NP_870080.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1]
 gi|32447634|emb|CAD79235.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1]
          Length = 552

 Score = 44.3 bits (103), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 55/266 (20%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D VP  DR    ++YE+++ +  S    G   F TPR ++ L   L           +P 
Sbjct: 178 DQVPMEDRDTKGDLYEYMLGKIASAGQNGQ--FRTPRHIIELMVELT----------APT 225

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPETH 252
               + DP CGT GFL  A  ++ +     K P +L            + HG + +    
Sbjct: 226 PTDVICDPACGTAGFLVVAGEYLRE-----KHPEVLRDAKLKKHFHGDMFHGFDFDSTML 280

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    ML+  +E+         + + S   +     +R+   L+NPPF    + +  A 
Sbjct: 281 RIGSMNMLLHGVEN------PDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAK 334

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +              L  +       L        L P  GGRAAI++    LF   +  
Sbjct: 335 DL-------------LQVVKTKKTELLFLTLFLRLLKP--GGRAAIIVPDGVLFG--SSK 377

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF 398
               +R+ L+E+  ++ I+++P  +F
Sbjct: 378 AHKTLRKMLVEDQKLDGIISMPGGVF 403


>gi|313837684|gb|EFS75398.1| hypothetical protein HMPREF9621_00242 [Propionibacterium acnes
           HL037PA2]
 gi|314972623|gb|EFT16720.1| hypothetical protein HMPREF9622_00264 [Propionibacterium acnes
           HL037PA3]
          Length = 61

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           L H++   E+ P G  R  +VLS SPLF+G+A  G+ +IRRW+
Sbjct: 7   LGHMSPVTEVSPQGS-RVGVVLSGSPLFSGQASFGKRKIRRWM 48


>gi|163785235|ref|ZP_02179907.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879497|gb|EDP73329.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 162

 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 62/104 (59%), Gaps = 10/104 (9%)

Query: 367 NGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           +G  GS  E +IR+  +E DLIEA++ LP +LF+ T     + +L+  K ++ + ++ LI
Sbjct: 5   SGAEGSNRERDIRKKFVEQDLIEAVILLPENLFYNTTAPGVIIVLN--KNKKHKEEILLI 62

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRML 468
           NA++ +     +G+ + I+      +I ++Y + +E  KFS+++
Sbjct: 63  NASEKYE----KGRPKNILTGID--EIAEVYHNWKEVEKFSKII 100


>gi|169834613|ref|YP_001693403.1| hypothetical protein CLD_A0164 [Clostridium botulinum B1 str. Okra]
 gi|169123161|gb|ACA46996.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 972

 Score = 43.9 bits (102), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 42/183 (22%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           + +P  ++SNIYE L+   G +  +  + F TP    +LA        D + KES G   
Sbjct: 283 NIIPIELISNIYEVLL---GEKAQDDDKAFYTPE---YLA--------DYIVKESLGTFL 328

Query: 208 T------LYDPTCGTGGFLTDAMN-----HVADCG---SHHKIPPILVP--HGQELEPET 251
           T      + DP+CG+G FL +++      +V D G    + K+  ++    +G +  PE 
Sbjct: 329 TKDSQCKVLDPSCGSGIFLVESLQLIISKNVDDNGYIKDNDKLCQLIESNIYGVDSNPEA 388

Query: 252 HAVCVAGMLIRRLESDPRRDLSK----NIQQGSTLSKDLFTGK--------RFHYCLSNP 299
             V +  + +   +    + L      N++  +    D F  +        +F + L NP
Sbjct: 389 IDVTIFSLYLTLFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNP 448

Query: 300 PFG 302
           P+G
Sbjct: 449 PWG 451


>gi|32477069|ref|NP_870063.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
 gi|32447617|emb|CAD79218.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
          Length = 552

 Score = 43.9 bits (102), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 55/266 (20%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D VP  DR    ++YE+++ +  S    G   F TPR ++ L   L +          P 
Sbjct: 178 DQVPMEDRDTKGDLYEYMLGKIASAGQNGQ--FRTPRHIIELMVELTV----------PT 225

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPETH 252
               + DP CGT GFL  A  ++ +     K P +L            + HG + +    
Sbjct: 226 PTDVICDPACGTAGFLVVAGEYLRE-----KHPEVLRDAKLKKHFHGDMFHGFDFDSTML 280

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    ML+  +E+         + + S   +     +R+   L+NPPF    + +  A 
Sbjct: 281 RIGSMNMLLHGVEN------PDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAK 334

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +              L  +       L        L P  GGRAAI++    LF   +  
Sbjct: 335 DL-------------LQIVKTKKTELLFLTLFLRLLKP--GGRAAIIVPDGVLFG--SSK 377

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF 398
               +R+ L+E+  ++ I+++P  +F
Sbjct: 378 AHKTLRKMLVEDQKLDGIISMPGGVF 403


>gi|257064716|ref|YP_003144388.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792369|gb|ACV23039.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 650

 Score = 43.9 bits (102), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 25/200 (12%)

Query: 211 DPTCGTGGFLTDAM-NHVAD----CGS---HHKIPPILVPH--GQELEPETHAVCVAGML 260
           D  CG+G FL  AM   +AD    C       +   I   H  G E E + + +    ML
Sbjct: 335 DECCGSGSFLVQAMVKELADARLGCTEAEFRERADEIKQHHIFGIENEEKAYGLSTTNML 394

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           I         D + N++ GS   K  F    +    L NPP+  K      + +++    
Sbjct: 395 IHG-------DGNSNVEFGSCFDKRQFIADAKPTVILMNPPYNAKPRTIPASYKRDWTAS 447

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E  R G   P      ++F+ +L++  +     G R A++L  +       G+  S ++ 
Sbjct: 448 E--RNGKSDPT---KGLVFVKYLSDIAKAEDWDGVRLAVLLPMAAAIG--TGTRLSSVKE 500

Query: 380 WLLENDLIEAIVALPTDLFF 399
            LL ++ +EA+ +LP ++F+
Sbjct: 501 MLLVDNTLEAVFSLPAEIFY 520


>gi|257466226|ref|ZP_05630537.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917383|ref|ZP_07913623.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691258|gb|EFS28093.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 267

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
           D+ K +FED D       ST+A  EK   L  I    + I        D     + YE+L
Sbjct: 130 DDIKGLFEDVDTTSNRLGSTVA--EKNKRLADILTGIASINFDDFKNNDIDAFGDAYEYL 187

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           I  + S   +   +F TP+ V  L   L++        E    I  +YDPTCG
Sbjct: 188 ISNYASNAGKSGGEFFTPQTVSKLLARLVM--------EGKETINKVYDPTCG 232


>gi|114798203|ref|YP_761235.1| type I restriction-modification system, M subunit [Hyphomonas
           neptunium ATCC 15444]
 gi|114738377|gb|ABI76502.1| type I restriction-modification system, M subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 513

 Score = 43.9 bits (102), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 105/261 (40%), Gaps = 45/261 (17%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D +P  DR    ++YE+++ +  S    G   F TPR ++ L   +            P 
Sbjct: 138 DKIPMDDRDTKGDLYEYMLGKIASAGQNG--QFRTPRHIIQLMVEM----------TQPT 185

Query: 205 MIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPIL---VPHGQELEPETHAVCVA 257
               + DP  GT GFL  A  ++    A    H K        + HG + +P    +   
Sbjct: 186 PQDVICDPAAGTCGFLVAAGEYLREKHASLFRHEKQRTHFHNGMFHGFDFDPTMLRIGSM 245

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E +P      ++ Q      D   G R+   L+NPPF    + D  A + +  
Sbjct: 246 NMVLHGVE-NPDVSYRDSLAQ----EHDADAG-RYSLILANPPFAGSLDYDTTAKDLQQ- 298

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     + K     +LFL      L+     GGRAA+++    LF   + +    +
Sbjct: 299 ----------IVKTKKTELLFLALFLRLLKT----GGRAAVIVPDGVLFG--SSTAHKTL 342

Query: 378 RRWLLENDLIEAIVALPTDLF 398
           R  L+E   +EA++ LP+ +F
Sbjct: 343 REMLVEKHKLEAVLKLPSGVF 363


>gi|313896529|ref|ZP_07830080.1| type I restriction modification DNA specificity domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974953|gb|EFR40417.1| type I restriction modification DNA specificity domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 34/190 (17%)

Query: 239 ILVPHGQELEP------ETHAVCVAGMLIRR-----LESDPRRDLSKNIQQGSTLSKDLF 287
           +L+  GQ   P      E +A C     + R     L  +  R     + Q +++ +  F
Sbjct: 43  VLIAEGQRFAPYIKDMVEKYAYCCYLFTVEREIHVILLKEILRAYPHTVVQKTSIYEYEF 102

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             ++F   +S P  G++   D           +L RF        D  M+ L +L     
Sbjct: 103 LREKFDLIMSVPTMGRRNRVD-----------DLNRF-----MCRDYEMVALENLL---- 142

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           L  +  G+ AIV+ +   F    G   + +R ++ E   +E I  LP  +F  T + T+L
Sbjct: 143 LHLSSAGKLAIVMPAKITF---GGGRIANLRNFIQEMYCLEEIAELPDGIFVGTGVKTHL 199

Query: 408 WILSNRKTEE 417
           +++S  KTE+
Sbjct: 200 FVISAGKTED 209


>gi|213027397|ref|ZP_03341844.1| hypothetical protein Salmonelentericaenterica_35384 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE L+++  +E   GA  + TPR ++     LL           P     + DP  GT
Sbjct: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAAGT 178

Query: 217 GGFLTDAMNHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL +A  +V           G            G EL P T  + +   L+  +E + 
Sbjct: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN- 237

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
             D    I+ G+TL  D     +     +NPPFG
Sbjct: 238 -LDHGGAIRLGNTLGSDGENLPQADIVATNPPFG 270


>gi|254410126|ref|ZP_05023906.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196183162|gb|EDX78146.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 679

 Score = 43.9 bits (102), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 104/270 (38%), Gaps = 55/270 (20%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  ++   ++ LI   G ++      F TPR +V    ++            P     + 
Sbjct: 144 PSYIIGEAFQALI---GPKLRGDKGQFFTPRSLVKTMVSI----------ADPKPYSKVV 190

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESD 267
           DP CGTG FL+++ N+  +              G+ L P+ H   V       I RL + 
Sbjct: 191 DPACGTGSFLSESYNYWIETT------------GETLLPDNHYSLVGLDKDKDISRLATA 238

Query: 268 PRRDLS-KNIQQGSTLSKDL-------FTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHK 317
               ++  N    +T S D+       F+ K F     L+NPPFG K    ++++ +++ 
Sbjct: 239 TLEIIAPNNYSVFTTDSLDINHLIASGFSSKIFDADVVLTNPPFGAKIGVTRESILEQYD 298

Query: 318 NGELGRFGPG---------LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            G    F            + K  D  +LF+  L  K+  P   GG   IVL      N 
Sbjct: 299 LGHHWYFSSTENSWIKSDKVRKNQDPQILFI-ELCVKILKP---GGVLGIVLPEGVFGNK 354

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + G     I  +L +  +I A++  P   F
Sbjct: 355 QTGY----IWDYLHQEGIITALLDCPRTTF 380


>gi|329937004|ref|ZP_08286633.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces griseoaurantiacus M045]
 gi|329303611|gb|EGG47496.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces griseoaurantiacus M045]
          Length = 724

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 32/216 (14%)

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           D L +  PG    + DP CG+G  L  A                   +GQ++ P      
Sbjct: 190 DLLARLLPGAPTRVLDPACGSGSLLAAAARRG-----------ARELYGQDVLPVQARRS 238

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEK 314
              + +   E D +      ++   +L  D F        L NPP+G + W  D+ A + 
Sbjct: 239 AVSLALTASEDDTK----VTVRAADSLRADAFPELLADAVLCNPPYGVRDWGHDELAYDS 294

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                   R+  G+P  ++  + ++ H    L      GG AA++L   P    RA SG 
Sbjct: 295 --------RWAYGVPARAESELAWVQHALAHL----TPGGHAALLL--PPATASRA-SGR 339

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             +R  L+ +  + A++ALP       ++   +W+L
Sbjct: 340 -RVRAELVRSGALRAVLALPVGAAVPLHVPLQIWLL 374


>gi|283956931|ref|ZP_06374404.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791657|gb|EFC30453.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 242

 Score = 43.9 bits (102), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 30/140 (21%)

Query: 273 SKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           S NI + +TLSK   D+   +++   L NPPFG K        EKE       +     P
Sbjct: 13  SPNIIKTNTLSKKITDITEQEKYEVILVNPPFGGK--------EKE-------QIQENFP 57

Query: 330 KISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             S+ + +LFL H+   L+      GR AI++    LF  +  +    +++ LL++  +E
Sbjct: 58  IKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLE 111

Query: 389 AIVALPTDLFF-----RTNI 403
            +++LP+ +F      +TN+
Sbjct: 112 CVLSLPSGVFLPYSAVKTNV 131


>gi|289423038|ref|ZP_06424856.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156549|gb|EFD05196.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius
           653-L]
          Length = 270

 Score = 43.5 bits (101), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 83/230 (36%), Gaps = 41/230 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL----- 69
           IW  A++L G     DF   IL     R +    E   + + E  +  G S+ D      
Sbjct: 18  IWAIADELRGAVDGWDFKNYILGTMFYRYIS---ENITNYINEGEIEAGNSDFDFAKISD 74

Query: 70  -------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKA----- 113
                  E  V+  G+ F   SE   +         NL    E       ++AK      
Sbjct: 75  EMAKEAREGLVEEKGF-FILPSELFCNVRAKAKDNENLNETLEKVFRHIEESAKGSESES 133

Query: 114 ----IFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMSNIYEHLIRR 165
               +F+DFD +S       A    K+CK   G+ +++   V D       + YE+L+  
Sbjct: 134 DFAGLFDDFDVNSNKLGSTVAKRNEKLCKLLDGVADMNLGNVKDHDIDAFGDAYEYLMTM 193

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + S   +   +F TP DV  L T         L       I  +YDP CG
Sbjct: 194 YASNAGKSGGEFFTPADVSELLT--------RLGTVGKTEINKVYDPACG 235


>gi|169835034|ref|YP_001715745.1| hypothetical protein CLK_A0118 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409141|gb|ACA57551.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 972

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 42/183 (22%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           + +P  ++SNIYE L+   G +  +  + F TP    +LA        D + KES G   
Sbjct: 283 NIIPIELISNIYEVLL---GEKAQDDDKAFYTPE---YLA--------DYIVKESLGTFL 328

Query: 208 T------LYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVP------HGQELEPET 251
           T      + DP+CG+G FL +++  +     D   + K    L        +G +  PE 
Sbjct: 329 TKNSQCKVLDPSCGSGIFLVESLQLIISKNVDANGYIKDNDKLCQLIESNIYGVDSNPEA 388

Query: 252 HAVCVAGMLIRRLESDPRRDLSK----NIQQGSTLSKDLFTGK--------RFHYCLSNP 299
             V +  + +   +    + L      N++  +    D F  +        +F + L NP
Sbjct: 389 IDVTIFSLYLTLFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNP 448

Query: 300 PFG 302
           P+G
Sbjct: 449 PWG 451


>gi|114566063|ref|YP_753217.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336998|gb|ABI67846.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 489

 Score = 43.5 bits (101), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 102/261 (39%), Gaps = 41/261 (15%)

Query: 144 ELHPDTVPDRVMS-NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           EL+   + D  M  ++YE+++ +  +    G   F TP+ +  +   LL           
Sbjct: 134 ELYEHDIKDLDMQGDVYEYMLGKLSTAGQNG--QFRTPKQIRDMMVRLL----------D 181

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL----EPETHAVCVAG 258
           P     + DP CGT GFL     ++ +       P      G  +    + +   + ++ 
Sbjct: 182 PAPDNKVCDPACGTAGFLVSIAEYIREKYETEMTPEQWEHFGGAMFTGFDTDRTMLRISA 241

Query: 259 M-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M L+    + PR +   ++ + +++S        +   L+NPPF          ++ E  
Sbjct: 242 MNLMLHSITQPRIEYVDSVSKQNSIS------SAYDIILANPPF-------TGTIDTESI 288

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N  L      +       +LF+      L      GGR + ++    LF          +
Sbjct: 289 NDNL----KAVCSSKKTELLFVALFLRML----RKGGRCSCIVPDGVLFG--TTRAHKAL 338

Query: 378 RRWLLENDLIEAIVALPTDLF 398
           R+ L+EN  ++ ++++P+ +F
Sbjct: 339 RKELVENHQLQTVISMPSGVF 359


>gi|307637134|gb|ADN79584.1| typeI restriction enzyme-M protein [Helicobacter pylori 908]
 gi|325995725|gb|ADZ51130.1| type I restriction enzyme M protein [Helicobacter pylori 2018]
 gi|325997321|gb|ADZ49529.1| type I restriction enzyme M protein [Helicobacter pylori 2017]
          Length = 381

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 27/206 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E+L++ + +       ++ TP  +  +   LL+          P     +YDP+ GTG
Sbjct: 190 IFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLV--------IKPTQSVKIYDPSAGTG 241

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+ H     S          + Q++  ++  +    +++  L    R  +  N  
Sbjct: 242 TLLM-ALAHQIGTDS-------CTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTL 293

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                SKD     +  + +SNPPF   +  +   + +   +  LG   P +PK     M 
Sbjct: 294 TNPYHSKD--HKGKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGV--PNIPKNDKSKMP 349

Query: 337 ---LFLMHLANKLELPPNGGGRAAIV 359
              LF  H  N L   P G G A IV
Sbjct: 350 IYTLFFQHCLNMLS--PKGKG-AIIV 372


>gi|586070|sp|Q07605|T4BA_BACCO RecName: Full=Restriction enzyme BgcI subunit alpha; Includes:
           RecName: Full=Adenine-specific methyltransferase
           activity
 gi|304140|gb|AAA16626.1| restriction endonuclease alpha subunit [Bacillus coagulans]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 107/297 (36%), Gaps = 54/297 (18%)

Query: 150 VPDRVMSNI-YEHLIRRFGSEVSEGAED------FMTPRDVVHLATALL-LDPDDALFKE 201
           + D++ SN  ++ L   +G  V  G  D       +TPR +  L   L+ ++  D +   
Sbjct: 293 IMDKIKSNTDFDILGNFYGEFVKYGGNDGNPLGIVLTPRHITSLMAELIGINKSDFVL-- 350

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                    DP CGTG FL  AMN +   A+     +       +G E++ +   +    
Sbjct: 351 ---------DPACGTGAFLISAMNRMLGQAENDDERRDIKQNRLYGIEIQQKLFTIATTN 401

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++R    D + +L ++     T    +  G   +  L NPP+ +             KN
Sbjct: 402 MILR---GDGKSNLIRD--NCLTFDNTIMNGYGINKILMNPPYSQA------------KN 444

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            +                  L  +   LE+   GG   AIV  S+ +   R        +
Sbjct: 445 DQTQHLSE------------LSFIQQALEMLVVGGKLCAIVPQSTMVGKNRHDKAR---K 489

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           + +L+   +E ++ L  D F    +   + I           +V  +N  D    +R
Sbjct: 490 KQILKQHTLETVITLNKDTFHGVGVNPCIVIFKAGIKHPENKRVSFVNFEDDGHVVR 546


>gi|327398989|ref|YP_004339858.1| N-6 DNA methylase [Hippea maritima DSM 10411]
 gi|327181618|gb|AEA33799.1| N-6 DNA methylase [Hippea maritima DSM 10411]
          Length = 714

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 110/281 (39%), Gaps = 55/281 (19%)

Query: 156 SNIYEHLIRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +++Y+ +  RF S  S E    F+TP  ++     ++          +P    T+ DPT 
Sbjct: 369 TDLYQLIFYRFASAFSKEQKGQFITPLPLIDFLVEIV----------NPRNGETVIDPTA 418

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G   FL+     V+   S+ K+    + +G + + +   +    ML   L  D    L  
Sbjct: 419 GVADFLS-----VSYVNSNSKLDDNNI-YGVDNDEQMVMLAQLNML---LNGDGNAKLYY 469

Query: 275 NIQQGSTLSK------------DLFTGK------------RFHYCLSNPPFG--KKWEKD 308
              +GS   K            DL +              +F   L+NPPFG  +KWE  
Sbjct: 470 IPDKGSITHKISIKNEPVELIPDLHSKGNWDNWRDDTKLLKFDVVLTNPPFGEDRKWEP- 528

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                +E K  EL      + +  +   L L+ L N   +    G R  IVLS+S     
Sbjct: 529 --KTTEEKKLAELYELW-HIARAGNWIDLGLVFLENAYRILKENG-RLGIVLSNSIASID 584

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
           R        R+WL++   I A+  LP ++F  T + T L +
Sbjct: 585 RWEKA----RKWLIDKMRIVALFDLPANVFADTGVNTTLIV 621


>gi|296285046|ref|ZP_06863044.1| N-6 DNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 866

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 107/263 (40%), Gaps = 60/263 (22%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G   + TPR +V     L              +  TL D  CG+GGFL +A   + +  
Sbjct: 293 KGLGQYFTPRPLVEFMCDL----------AEVSLSDTLLDFACGSGGFLINAYERMREEV 342

Query: 232 SHHKIPPILVPHG--QELEPETHAVC--VAGMLIRRLESDPRRDLS-----------KNI 276
                   L+P G  Q L     ++   V    I  ++++PR   +           + +
Sbjct: 343 E-------LIPAGTLQRLGETRESLIEDVKSKQIFGIDAEPRAARTARMNMLLWGDGRCV 395

Query: 277 QQGSTLSKDLFTGKRF--------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +G+ L+    TGK +                 L+NPPFG + ++ K  V K++  G   
Sbjct: 396 MRGNALASQDLTGKPYPISPYKKSDNNSGCSLILANPPFGAREKEQK--VLKKYIFGSKK 453

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R      + S  + +  +  A +L  P    GR AIVL +  L    +    S++R ++ 
Sbjct: 454 R-----QRKSQKTEVLFVERAMELLRPE---GRMAIVLPTGLL----SADTYSDLRGFIA 501

Query: 383 ENDLIEAIVALPTDLFFRTNIAT 405
            +  + A+V+LPT  F ++ + T
Sbjct: 502 RHAKVNAVVSLPTHAFVQSGVPT 524


>gi|156308544|ref|XP_001617681.1| hypothetical protein NEMVEDRAFT_v1g225887 [Nematostella vectensis]
 gi|156195235|gb|EDO25581.1| predicted protein [Nematostella vectensis]
          Length = 336

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F    +NPPFG K + +K+  +K             L K SD   +  +    KL  P 
Sbjct: 141 KFDMIFTNPPFGAKVKVEKEIADKYD-----------LSKYSDAPEVLFIEACYKLLKP- 188

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWI 409
             GG+ AIVL    L N         +R W+LEN  I A V L  + F  +  +   L  
Sbjct: 189 --GGKMAIVLPDGILGN----PNTLPVREWILENFKILASVDLAVEAFLPQVGVQASLLF 242

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRR 442
           L  +   +R    +     +++ +I  + GK RR
Sbjct: 243 LQKKTDNDRNIARETDEDYEVFMAIAEKLGKDRR 276


>gi|303235246|ref|ZP_07321864.1| conserved domain protein [Finegoldia magna BVS033A4]
 gi|302493560|gb|EFL53348.1| conserved domain protein [Finegoldia magna BVS033A4]
          Length = 154

 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE------LHPDTVPDRVMSNIYEHL 162
           D+ K +FED D +S+      A    ++C   +GI+         + +      + YE+L
Sbjct: 23  DDIKGLFEDVDTTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDID--AFGDAYEYL 80

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           I  + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG
Sbjct: 81  IFNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPTCG 125


>gi|32476969|ref|NP_869963.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
 gi|32447517|emb|CAD79106.1| probable Type I restriction enzyme EcoEI M protein-Escherichia coli
           [Rhodopirellula baltica SH 1]
          Length = 351

 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE L+    S    G   F TPR ++ L + L+          +P +   + DP 
Sbjct: 194 IQGDVYEMLLNEISSAGKNG--QFRTPRHIIKLISELV----------NPQLGHRVCDPA 241

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA---VCVAGML 260
           CGT GFL DA  ++    +  K         QE EP+        V+G L
Sbjct: 242 CGTAGFLLDAYQYIITQLARKK-----AKKNQEFEPDEDGFIRTSVSGQL 286


>gi|330468262|ref|YP_004406005.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
 gi|328811233|gb|AEB45405.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ DP  G+G  L  A+   A C + +         GQEL+     +    + +R +  D
Sbjct: 165 TVLDPAAGSGAVLRAAVR--AGCTTAY---------GQELDEGLARLAELWLALREVPGD 213

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGP 326
                   +  G +L  D + G  +   + +PPFG   W  ++ + +     G   R  P
Sbjct: 214 --------MNVGDSLRADAYAGHTYDTVVCHPPFGATNWGDEELSHDPRWIVGTTPRTEP 265

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L  +       L HL          GG A +++  + + + RAG     IR  LL    
Sbjct: 266 ELAWVQHA----LAHL--------RAGGHAVLLMPPT-VASRRAG---RRIRAELLRRGA 309

Query: 387 IEAIVALPTDLFFRTNIATYLWIL 410
           + A++ALP        +  +LW+L
Sbjct: 310 LRAVIALPPGAAAPHGVPLHLWVL 333


>gi|332366262|gb|EGJ44017.1| restriction enzyme BgcI subunit alpha [Streptococcus sanguinis
           SK355]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 118/316 (37%), Gaps = 64/316 (20%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEH 161
           I S  D  + I  D   ++ +  L     L+      S    H      P  ++ + Y  
Sbjct: 262 IGSLLDTFRFITTDVRLNTKLTELGNRTPLWYFTDRLSNEVYHRVVGGTPFDILGSFYSE 321

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            ++  G++ S+     +TP ++  L   L+ + P D           T+ DP  GTG FL
Sbjct: 322 FVKYGGNDGSDLGI-VLTPLNITSLMADLIEISPTD-----------TVIDPATGTGAFL 369

Query: 221 TDAMN----HVADCGSHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRLES 266
             +M      V     ++K                 +G EL+ + +A+    M++     
Sbjct: 370 IASMQKMIEQVEKDDVNYKTSEAKKQAIKKIKSDRLYGIELKSKLYAISATNMIL----- 424

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             R D   ++++G      L     F   L NPP+ +   K    + +            
Sbjct: 425 --RNDGRAHLEEGDMFHLSLENDGNFDKLLMNPPYSQAKTKVTSHLSE------------ 470

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES---EIRRWLLE 383
                    M F++    +L+     GGRAA ++  S + +G     ++   E+++ LL+
Sbjct: 471 ---------MNFMIKALGRLKC----GGRAAFIVPQSTMTSGPKAIKDADYRELKQELLD 517

Query: 384 NDLIEAIVALPTDLFF 399
           N+ I A++ +    F+
Sbjct: 518 NNRIIAVITMNPKTFY 533


>gi|281355399|ref|ZP_06241893.1| DNA binding domain protein, excisionase family [Victivallis
           vadensis ATCC BAA-548]
 gi|281318279|gb|EFB02299.1| DNA binding domain protein, excisionase family [Victivallis
           vadensis ATCC BAA-548]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y+ L RR GS V  G+  F TP +VV   TA L  P D           TL DP CG+G
Sbjct: 183 LYQAL-RRTGSRVQAGS--FYTPPEVVRSMTAGL-TPHDGF---------TLLDPGCGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            FL  A    A+ G            G +L+P    +    +L     + P  D   N++
Sbjct: 230 QFLLGA----AEAGWEFD-----QLFGIDLDPLALRLAALNLL----LAFPAVDALPNLK 276

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGK 303
               L  D F  +RF   + NPP+G+
Sbjct: 277 CADALLTDSFGRRRFDVVIGNPPWGR 302


>gi|237755533|ref|ZP_04584152.1| putative type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692296|gb|EEP61285.1| putative type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 33/278 (11%)

Query: 156 SNIYEHLIRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           ++IY+ +  RF +E + E    F+TP  ++     ++          +P    T+ DP  
Sbjct: 363 TDIYQLVFYRFANEFAKERKGQFITPIWLIDFLVKIV----------NPRGNETVIDPCV 412

Query: 215 GTGGFLT------------DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           G   FL+            D +  + +      +  + +    +   + + +   G +  
Sbjct: 413 GIADFLSLSFVNSNPKLKDDNLYGIDNDRQMIMLAQLNMLLNGDGNAKLYYIPDKGSIDH 472

Query: 263 RLESDPRR-DLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +++ D +   L+ N  +        D    K+F   L+NPPFG+  ++   A   E K  
Sbjct: 473 KIDIDGKVVKLNPNYHKNGNWDNWPDTTELKKFDVVLTNPPFGE--DRAYKAFTTEDKEI 530

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   L K  +   L L+ L N + L    G R  I+LS+S     R        RR
Sbjct: 531 AECYELWHLNKQGNWIDLGLIFLENAVRLLKENG-RMGIILSNSIASIDRWKKA----RR 585

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           W +EN  I A+  LP ++F  T + T + +    K EE
Sbjct: 586 WFIENMRIVALFDLPPNIFADTGVNTTIIVAYKPKKEE 623


>gi|239988283|ref|ZP_04708947.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 11379]
          Length = 769

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 44/244 (18%)

Query: 178 MTPRDVVHLATALLLDPD--DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +TP  +  L   L   P   D   +E P  +R++ DP  GTG  L  A+   A       
Sbjct: 229 LTPPQLAELMADLAEPPKGADRAARERP--VRSVLDPAAGTGALLR-AVGGPATL----- 280

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--------IQQGSTLSKDLF 287
                  + QE +P   A+    + +      PRR             ++ G TL  D F
Sbjct: 281 -------YAQEADPGLAALTA--LRLALAAEGPRRAADGTHRAAPGPVVRTGDTLRADAF 331

Query: 288 TGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                   L +PPF ++ W  D+ A +         R+  GLP  ++  + ++ H+  +L
Sbjct: 332 PELAADTVLCHPPFNERNWGHDELAYDP--------RWEYGLPARTESELAWVQHVLARL 383

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               +GG   A++L      + R+G     IR  LL    + A++ALP        +  +
Sbjct: 384 R---DGG--TAVLLMPPAAASRRSGR---RIRAGLLRRGALRAVIALPAGAAPPYGVPLH 435

Query: 407 LWIL 410
           LWIL
Sbjct: 436 LWIL 439


>gi|239941823|ref|ZP_04693760.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
 gi|291445270|ref|ZP_06584660.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
 gi|291348217|gb|EFE75121.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
          Length = 769

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 44/244 (18%)

Query: 178 MTPRDVVHLATALLLDPD--DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +TP  +  L   L   P   D   +E P  +R++ DP  GTG  L  A+   A       
Sbjct: 229 LTPPQLAELMADLAEPPKGADRAARERP--VRSVLDPAAGTGALLR-AVGGPATL----- 280

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--------IQQGSTLSKDLF 287
                  + QE +P   A+    + +      PRR             ++ G TL  D F
Sbjct: 281 -------YAQEADPGLAALTA--LRLALAAEGPRRAADGTHRAAPGPVVRTGDTLRADAF 331

Query: 288 TGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                   L +PPF ++ W  D+ A +         R+  GLP  ++  + ++ H+  +L
Sbjct: 332 PELAADTVLCHPPFNERNWGHDELAYDP--------RWEYGLPARTESELAWVQHVLARL 383

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               +GG   A++L      + R+G     IR  LL    + A++ALP        +  +
Sbjct: 384 R---DGG--TAVLLMPPAAASRRSGR---RIRAGLLRRGALRAVIALPAGAAPPYGVPLH 435

Query: 407 LWIL 410
           LWIL
Sbjct: 436 LWIL 439


>gi|46143841|ref|ZP_00133971.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 234

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 40/239 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFG 63
           A L   IW+ A ++ G     DF + +L  TL  R         +E    +++    +  
Sbjct: 8   AELQRRIWQIANEVRGSVDGWDFKQYVLG-TLFYRFISEHFVNYIEGGDESIKYAAWSDD 66

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
             NI L  E  +K  GY  Y +  +  + + + ++  NL + +                 
Sbjct: 67  DENIKLGKEHVIKEKGYFIYPSQLFE-NVVKNAHSNPNLNTELKEIFTAIESSATGYDSE 125

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEH 161
           ++ K +F DFD +S   RL     +K   L  + K  + ++     D   D +  + YE 
Sbjct: 126 NDIKGLFADFDTTSN--RLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQID-LFGDAYEF 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L
Sbjct: 183 LISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233


>gi|325564132|gb|ADZ31420.1| M.SfcI [Enterococcus faecium]
          Length = 606

 Score = 42.7 bits (99), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 33/221 (14%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILVPH---GQELEPETHAVC--VAGMLI 261
           T+ DP CG G FL  A  ++++      +P   ++ H   G ++E E    C  V  +L+
Sbjct: 109 TILDPGCGGGIFLVSAAQYISE---KFGVPLEKVIKHNIYGLDIESENVRRCRIVLDVLL 165

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEK---E 315
            +  S  + DLS NI    +L ++   LF  ++ ++ + NPP+    +  K+ V++   E
Sbjct: 166 EQSGSG-KLDLSSNILCVDSLRENWGYLFGERKINFVIGNPPYVNAHDMSKETVKRLKNE 224

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
               ++G F             F+    N+L+      G+   ++ ++ L    + +  +
Sbjct: 225 FITTKVGTFNIFYA--------FVEKAMNELDYE----GQVGFIVPNNFL----SITAAT 268

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           ++R +L  N  +  I+    ++ F+  + TY  IL   K E
Sbjct: 269 DLRHFLQSNKYLMKIIDFSDNMVFKP-VRTYNCILQLSKKE 308


>gi|24213603|ref|NP_711084.1| methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658571|ref|YP_002657.1| site-specific modification DNA-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|24194397|gb|AAN48102.1| methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601815|gb|AAS71294.1| site-specific modification DNA-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 43/252 (17%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V H     +L  +      S G+ R L DP  G G F    +N + D  +    
Sbjct: 15  FFTPERVAHFLVDWVLGAER--ITSSEGLKRIL-DPAIGNGVFFESVLNRLPDLNAEWV- 70

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLF---TGK 290
                  G +L+ E    C+         S  R  L   I   S LS   +D       +
Sbjct: 71  -------GFDLDIE----CL---------SSSRAVLENRISDSSILSFYDRDFLLQEENQ 110

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   L NPP+ K  +K+     KE      G+    LP  ++  + FL+   N + +  
Sbjct: 111 KFDVILCNPPYRKINDKN---YSKELIQQFEGKSDRKLPGTANLYVFFLLKCLNLIHV-- 165

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTNI-ATYLW 408
             GGRAA ++     FN   G     I+  L E+ L+ ++    P D+ F   I ++ + 
Sbjct: 166 --GGRAAFLVPQD-FFNSGYGVF---IKSVLQESGLLHSLFLFSPQDILFDEAITSSCIL 219

Query: 409 ILSNRKTEERRG 420
           +  N + E++ G
Sbjct: 220 LFENSEREKKSG 231


>gi|113476047|ref|YP_722108.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
 gi|110167095|gb|ABG51635.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
          Length = 493

 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 110/259 (42%), Gaps = 37/259 (14%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D++P  DR    ++YE+++ +  +    G   F TPR ++ +   L+          +P 
Sbjct: 133 DSLPLDDRDTKGDLYEYMLSKLNTAGQNGQ--FRTPRHIIKMIVDLM----------TPQ 180

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE--LEPETHAVCVAGMLIR 262
               + DP  GT GFL     H+      +    +  P  +E   +   H       ++R
Sbjct: 181 PNDVVCDPAFGTAGFLVAVAEHLQQLKDENGSLVLNAPGNKEHFYQHMFHGFDFDATMLR 240

Query: 263 RLESDPRRDLSKN--IQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
               +  +   +N  I+    LS+D     + F   L+NPPF  K    K ++ K+    
Sbjct: 241 IGSMNLMQHGIENAQIEARDALSEDHAGVEEMFTLVLANPPF--KGSIQKSSIAKD---- 294

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   L KI + +   L+ LA  L L    GGRAA+++    LF   +     ++R+
Sbjct: 295 --------LTKIVNTTKTELLFLALFLRLLKT-GGRAAVIVPDGVLFG--SSKAHKDVRK 343

Query: 380 WLLENDLIEAIVALPTDLF 398
            L+E   ++ ++++P+ +F
Sbjct: 344 MLVEEHKLDGVISMPSGVF 362


>gi|301598299|ref|ZP_07243307.1| putative restriction-modification protein [Acinetobacter baumannii
           AB059]
          Length = 212

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +L   ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P
Sbjct: 113 KLKLSSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NP 161

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVAD 229
                +YDP CGTGGFLT+A +H+ D
Sbjct: 162 KYGEKIYDPFCGTGGFLTEAFDHIKD 187


>gi|332367332|gb|EGJ45067.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus sanguinis SK1059]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 148/367 (40%), Gaps = 72/367 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGSHHK 235
           F TP  +V        D   ++   S GM  T+ DP CG G FL +A+   + D  S+ K
Sbjct: 327 FFTPLKIV--------DEMVSMVDISEGM--TICDPACGVGKFLLEAVEKRIEDSYSYSK 376

Query: 236 ---IPPILVPHGQELEPETHAVCV----AGMLIRRLESDPRRDLSKNIQQ-GSTLSKDLF 287
                 I      ++  E   + +    A  LI   E   + +  K++Q    TL  D F
Sbjct: 377 GKLTSKIRFFGYDKMMSEKDDITIILAKANTLIYFSELFQQNNSFKDVQAIAKTLLNDSF 436

Query: 288 -------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                           R+   L+NPP+ +  E  + A     K  ++ ++G      S  
Sbjct: 437 YLHKSMLGTLENLEENRYDLILANPPYYQSKEMSELA-----KATDIYKYGG-----SGV 486

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             LFL  +   ++     GG A IVL    +F+  A     E  + L     I+A+++LP
Sbjct: 487 EALFLEWIMRSVK----HGGVANIVLPDG-IFSNHANKKLKEKLKELF---FIDALISLP 538

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            + FF T   TY  IL+ RK  E   +  ++    ++T I                + LD
Sbjct: 539 VNAFFNTPKKTY--ILTIRKKTENEIENNIVQDYPVFTYIAG-----------SIGETLD 585

Query: 455 IYV--SRENGKFSRMLDYRTFGYRRIK----VLRPLRMSFILDKTGLARLEADITWRKLS 508
           +Y   S EN     ++ Y    YR+ +    +  P++ SF+LD + L  L  +    K S
Sbjct: 586 VYRFDSEENDLKQAVIKYNY--YRQFQDKNNLQEPIK-SFLLDDSRLKLLSIEELDSKKS 642

Query: 509 PLHQSFW 515
            + +++W
Sbjct: 643 WIIENWW 649


>gi|301513071|ref|ZP_07238308.1| putative restriction-modification protein [Acinetobacter baumannii
           AB058]
          Length = 427

 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +L   ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P
Sbjct: 253 KLKLSSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NP 301

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVAD 229
                +YDP CGTGGFLT+A +H+ D
Sbjct: 302 KYGEKIYDPFCGTGGFLTEAFDHIKD 327


>gi|166366727|ref|YP_001659000.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
 gi|166089100|dbj|BAG03808.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
          Length = 588

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 60/249 (24%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
           ++TPR +V      +++  D    E       + D +CG+GGFL  A  +V         
Sbjct: 308 YLTPRQLVEF----MVEIADIKIGEK------VLDLSCGSGGFLIRAFINVRKKIRFLDS 357

Query: 228 ADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           +     H +  ++  +  G E+ P    +C   M++         D  ++I  G ++ +D
Sbjct: 358 SQDEKDHLVSNLVTNNLWGIEINPRLATLCRINMIL-------HGDGYEHIYTGDSIRED 410

Query: 286 LFT---GKR-------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +F    G+R             F   L NPPF   +E           +  L R+  G  
Sbjct: 411 VFENTDGRRTDFLNIEQNNAAMFDVILINPPFNIPYE----------DSATLNRYYLGRG 460

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K + GS   ++  A +L  P    GR  ++L         +G  E+E+R ++     I  
Sbjct: 461 KAAQGSDYLVLERAIRLLKPET--GRLLVILPHGVA----SGVSETEVRNFVKSRTHIHG 514

Query: 390 IVALPTDLF 398
            ++LP   F
Sbjct: 515 CISLPVGSF 523


>gi|254383775|ref|ZP_04999123.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
 gi|194342668|gb|EDX23634.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
          Length = 737

 Score = 42.4 bits (98), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 90/244 (36%), Gaps = 47/244 (19%)

Query: 169 EVSEGAED--FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           E+ EGA    + TP  +  L   LL           P     + DP CG+G  L  A   
Sbjct: 161 ELDEGAASGVYQTPEGLAVLMARLL-----------PAEASRVLDPACGSGTLLAAAARR 209

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   K+       GQ+  P         +L+   E++        I+ G +L  D 
Sbjct: 210 -----DARKL------FGQDSLPVQGRRTAVRLLLAAPEAE------TTIRVGDSLRDDA 252

Query: 287 FTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           F        L NPPF  + W  D+ A +         R+  GLP   +  + ++ H    
Sbjct: 253 FPDVTVDAVLCNPPFADRDWGHDELAYDP--------RWAYGLPPRLESELAWVQHALAH 304

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           LE     GG A ++L  +  F     S    +R  L+    + A+++LP    +  +I  
Sbjct: 305 LEP----GGHAVMLLPPALAFR----SSGRRVRAELIRAGALRAVISLPARAAYPLHIGL 356

Query: 406 YLWI 409
            +W+
Sbjct: 357 QIWV 360


>gi|229088737|ref|ZP_04220294.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44]
 gi|228694562|gb|EEL47981.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44]
          Length = 548

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 31/181 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++S+IYE   +   +E  +    F TP ++V+L    ++D  + L K      +++ DP 
Sbjct: 145 LISSIYE---KSLNAEEKKRLGQFYTPNNIVNL----MIDETN-LRKIDFNNTKSIIDPA 196

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLES----- 266
           CG G FL + +  +        +  I+    HG ++ P    +    M    L +     
Sbjct: 197 CGAGIFLVNIIKMMKKRNQGLSLAKIIYNSLHGNDINPFAIFLTKLNMSCELLNTMKVPE 256

Query: 267 ------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D   D  KNI   +T+++D    +++ Y + NPP+ K         +K+ KN E
Sbjct: 257 EVMEFLDKYADF-KNIVLVNTITED--NDEKYDYIIGNPPYFK-------LSDKKFKNHE 306

Query: 321 L 321
           +
Sbjct: 307 M 307


>gi|91205673|ref|YP_538028.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91069217|gb|ABE04939.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 540

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 34/231 (14%)

Query: 208 TLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQEL-----EPETHAVCVAGM 259
            + DP CG G FL + +    D        KI P +   G +      E +T  +  A M
Sbjct: 20  VICDPACGVGKFLLEPIKSKIDRFYKIKDGKIIPKITIRGFDKGFGNNEQKTIILAKANM 79

Query: 260 LIRRLES-----DPRRDLSKNIQQGSTLSKDLFTG-------KRFHYCLSNPPFGKKWEK 307
           LI   E      +  ++ +       TL  D   G         +   L+NPP+    + 
Sbjct: 80  LIYFSEVIKNYPNHTKEFADLFNSTFTLKTDSILGTLKDPVENTYDLILTNPPYVT--DG 137

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
             +  E+  KN +L ++        +G  LF+  +   L+  PNG    A ++    +FN
Sbjct: 138 SSNFKEEIQKNNDLKKYYKINAMGVEG--LFMEWIIRALK--PNG---KAFIIVPDGIFN 190

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS--NRKTE 416
            +    +  +R +L +   I+ I++LP + FF T   TY+  ++  N KT+
Sbjct: 191 RQ---NDRNLRAFLCQECFIDGIISLPENTFFTTKQKTYILCITKKNNKTD 238


>gi|306823032|ref|ZP_07456408.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC
           27679]
 gi|309801128|ref|ZP_07695257.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022]
 gi|304553664|gb|EFM41575.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC
           27679]
 gi|308222017|gb|EFO78300.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022]
          Length = 640

 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 113/298 (37%), Gaps = 71/298 (23%)

Query: 178 MTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           +TPR +  L   +L + P+D +            DP CGT GFL  AM+ +    S    
Sbjct: 331 LTPRHITDLMCEILNIGPEDRVL-----------DPCCGTAGFLISAMHRMLSLSSSESQ 379

Query: 237 PPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----LFTG 289
              +     +G E++     +  + M++       R+D + N+Q    L ++       G
Sbjct: 380 RRSIKKKRLYGFEIQSNMFVIAASNMIL-------RKDGNSNLQCCDFLKQNPSQVQLDG 432

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
                 L NPP+ +  + D    E                      + F+ HL + L   
Sbjct: 433 ATV--GLMNPPYSQGSKDDPSQYE----------------------LSFVEHLLDSL--- 465

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G RAA+++  S +  G+    E   +  +L+   +E I+    + F+       + +
Sbjct: 466 -TEGARAAVIVPQSSM-TGKT-KDEKTFKESILKKHTLEGIITCNPNTFYGVGTNPVIAV 522

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-----IIND---DQRRQILDIYVSR 459
            +  +  E     + I+        RN+G + R     +  D   D+++ +LD++  R
Sbjct: 523 FTAHEPHEPEHVAKFID-------FRNDGYEVRPHIGLVEGDSAKDKKQHLLDVWNGR 573


>gi|193082832|emb|CAQ58412.1| putative transcriptional activator DEMETER [Hordeum vulgare subsp.
            vulgare]
          Length = 1981

 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 34/159 (21%)

Query: 405  TYLW------ILSNRKTEERRGK---------VQLINATDLWTSIRNEGKKRRI---IND 446
            TY W      +L+NR  EER            ++ IN  ++  +IR  G    +   I D
Sbjct: 1431 TYDWDILRKEVLANRGNEERSENAKDALDWETIRQINVKEISNTIRERGMNNMLAERIKD 1490

Query: 447  DQRRQILDI---------YVSRENGKFSRMLDYRTFGYRRIKVLRPL---RMSFILDKTG 494
               R + D          +V  +  K   +L  R  G + ++ +R L    M+F +D T 
Sbjct: 1491 FLNRVVRDHGSIDLEWLRHVDPDKAK-EYLLSIRGLGLKSVECVRLLTLHHMAFPVD-TN 1548

Query: 495  LARLEADITWRKLSPLHQSFWLDILK--PMMQQIYPYGW 531
            + R+   + W  L PL +S  L +L+  PM++ I  Y W
Sbjct: 1549 VGRICVRLGWVPLQPLPESLQLHLLELYPMLENIQKYLW 1587


>gi|329936983|ref|ZP_08286612.1| N-methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329303590|gb|EGG47475.1| N-methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 569

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 102/273 (37%), Gaps = 60/273 (21%)

Query: 145 LHPDTVPDRVMSNIYEHL---IRRFGSEVSEGAEDFMTPR---DVVHLATALLLDPDDAL 198
           L  DT P  V++ + E L   +RR GS+         +PR    V H A  +  D     
Sbjct: 138 LAGDTSPREVVTGLVERLTDSVRRAGSD------QITSPRVVRAVSHYAGEVASDA---- 187

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                     L+DP CG G  L               + P   P     E + H+   A 
Sbjct: 188 ---------ALFDPACGIGTLLL-------------AVGPQRGPRRYGQENDAHSARFA- 224

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHK 317
               RL +         I  G +L +D     +    + +PP G   W +++  ++    
Sbjct: 225 ----RLRAQLTGRGGVEIVTGDSLREDRLPELKADLVVCDPPVGISDWGREELLLDS--- 277

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                R+  G P  ++G + +L H A     P   GGR  +V+S+S  +  +AG     I
Sbjct: 278 -----RWELGTPSRAEGELAWLQH-AYAHTAP---GGRVLMVMSASVAYR-KAG---RRI 324

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           R  L+   ++  + ALP        +  +LW L
Sbjct: 325 RAELVRRGVLTQVTALPPGTAVSHALPVHLWHL 357


>gi|261868513|ref|YP_003256435.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413845|gb|ACX83216.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 825

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 109/283 (38%), Gaps = 75/283 (26%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
           F TPR+V+ L   +L          + G+   + DP CG+GGF+ +++ H+         
Sbjct: 273 FFTPRNVIKLMVNIL----------NQGVDEKIIDPACGSGGFIVESLRHIWAIWDKDAQ 322

Query: 228 -------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR-----RDLSKN 275
                  A      K    L+ HG E +     V  A M I     D +      D  + 
Sbjct: 323 RLKWNNLALQEEKQKAAMSLI-HGIEKDSLLAKVSKAYMAIL---GDGKGGIFCEDSLEL 378

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFG-----------------KKWEKDKDA-VEKEHK 317
                T ++       F+  L+NPPFG                 KKW+KD D  +E    
Sbjct: 379 PTHWDTKTQQSIHINSFNCLLANPPFGKDIKITGKEKLAQYKLAKKWKKDGDKYIETNKS 438

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N E+       P+I     LF+    + L      GGR  I++  +     R+      +
Sbjct: 439 NSEMP------PQI-----LFIERCLDLL----TDGGRMGIIIPETYFHAPRS----QYV 479

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIA--TYLWILSNRKTEER 418
             ++ ++++   ++ LP + F   N A    +++  NRK +E+
Sbjct: 480 MEFMAKHNIF-CLIDLPHNTFRPHNNAKCVVVFLEKNRKQQEK 521


>gi|32266590|ref|NP_860622.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449]
 gi|32262641|gb|AAP77688.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449]
          Length = 563

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 66/298 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP ++  L   LL        KES    +++Y+P  GTG       N+          
Sbjct: 121 YSTPLEINELLVGLLD------IKES----QSIYNPCYGTGSLFFAIANYAHS------- 163

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G+ELE  +    +A ++ + L+ + +  +  NI + +      F  ++F   +
Sbjct: 164 ---FELYGEELE--SSLARIAKIICKILDLNTQHLILNNILKNAQ-----FKNQKFDKII 213

Query: 297 SNPPF----GKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSMLFLMHLANKLELPPN 351
            NPP     G ++ K+ +            RF      I     +LFL+H  + L+    
Sbjct: 214 CNPPLDSHIGTQFLKEDE------------RFATYEALIKTYPELLFLIHSLSHLK---- 257

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              +   +L +  L      S E  +R  L E  LIE+I+ LP ++F        + +LS
Sbjct: 258 --DKGVFILRTQTLLKS---SLEGRLREKLCEEGLIESIIELPKNIFPHQTHEFSIIVLS 312

Query: 412 --NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
             NR            NA   +     +GK  R++N    +++L+IY  +  G +S +
Sbjct: 313 PNNRAILHINA-----NAPHFY---HKDGKYNRLVN---LKELLNIYRHKYVGTYSSL 359


>gi|283956930|ref|ZP_06374403.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791656|gb|EFC30452.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 249

 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  +YE L++  GS+     E F TPR ++  A   ++DP              +YDP+
Sbjct: 153 ALGEVYEKLLKDMGSDGGNSGE-FYTPRPLIK-AMVEVIDPKPK---------ERIYDPS 201

Query: 214 CGTGGFLTDAMNHV 227
           CG+ GFL ++  H+
Sbjct: 202 CGSCGFLVESFLHI 215


>gi|126640696|ref|YP_001083680.1| hypothetical protein A1S_0629 [Acinetobacter baumannii ATCC 17978]
          Length = 1459

 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 106/275 (38%), Gaps = 39/275 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           + F TP  +  +   LL +P      E+    +TL +PT G G  +           +H 
Sbjct: 229 QQFSTPITISAICQKLLFNP------ETLDTGKTLLEPTIGNGSLV-----------AHF 271

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P L   G E++           L   +E    R +  +  +     K L   + F +
Sbjct: 272 IKKPQLKIVGVEIDS-NRVKNTQLFLDANIEHSNLRVIEGDYSKIKL--KQLNNNELFDF 328

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFGK    DK  +   ++ G L R      ++    +L  + L           G
Sbjct: 329 TIANPPFGK---IDKTTLTL-NQAGSLERLNFSTQRLDHKILLETLSLR-------KDKG 377

Query: 355 RAAIVLSSSPLFN-GRAGSGESEIRRWLLENDLIEAIVALPTDLF----FRTNIATYLW- 408
           R+  ++ S   +  G    G   +  +L +N  +EA V L   L+     R N+   +  
Sbjct: 378 RSVFIIGSDSFYEAGVVKGGSKNLLNYLYDNYNVEAAVELDGSLYKKQGTRVNVRVLVIG 437

Query: 409 -ILSNRKTEERRGKVQLI-NATDLWTSIRNEGKKR 441
            +L N +T E   ++ +I N  DLW    N  +KR
Sbjct: 438 DLLENNRTYEVPHELPIINNVQDLWRWSENVLQKR 472


>gi|294786304|ref|ZP_06751558.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|294485137|gb|EFG32771.1| conserved hypothetical protein [Parascardovia denticolens F0305]
          Length = 562

 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 50/245 (20%)

Query: 207 RTLYDPTCGTGGFLTDA----MNHVAD-------CGSHHKIPPILVPHGQELEPETHAVC 255
           + L DP CGTGGFL ++    +++ +D         +HH +      +G +L+P    + 
Sbjct: 48  KVLLDPACGTGGFLFESYRTLLSNASDEQRDEIRTWAHHNL------YGVDLDPINVKLS 101

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-------------TGKRFHYCLSNPPFG 302
            A M+         +D S NI  G +L +  +                 +   L+NPPFG
Sbjct: 102 RALMI-------GAKDGSTNIVLGDSLREQKWGEFPMFPPVIGSEADGSYDVVLTNPPFG 154

Query: 303 KKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVL 360
           +K + +  DA   ++   +    G    + +D  + L  M  A +L      GGR  IVL
Sbjct: 155 EKLKIRTTDAKRAKYTICKHTNGGANSEQYADTELGLVFMERAYRLLAE---GGRLGIVL 211

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR 419
             +  F+    +     R+W+ ++  +  ++ +P + F       T  ++++ + T   +
Sbjct: 212 PETYFFS----TSYRWFRQWVDQHFDVIGVMNVPMEAFQGFCRAKTNFYVMTKKTT---K 264

Query: 420 GKVQL 424
           GKV L
Sbjct: 265 GKVIL 269


>gi|320536548|ref|ZP_08036573.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320146603|gb|EFW38194.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 35/147 (23%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-RR 165
           F DNAK    +  F   +  L+    +Y +            T  D V    +E  + + 
Sbjct: 260 FDDNAKIEIRENSFEQIVKELQ----IYNLS-----------TTSDDVKGIAFEQFLGKT 304

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E+ +    F TPR +V+   ++L DP +  +         + DP CG+GGFL  A  
Sbjct: 305 FRGELGQ----FFTPRTIVNFMVSVL-DPQEGEY---------ICDPCCGSGGFLIKAFE 350

Query: 226 HVADCGSHHKIPPILVPHGQELEPETH 252
           +V       KI   +V   ++++ + +
Sbjct: 351 YV-----REKIEKDIVAQKEKIKADLY 372


>gi|300790744|ref|YP_003771035.1| type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
 gi|299800258|gb|ADJ50633.1| putative type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
          Length = 564

 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 84/236 (35%), Gaps = 48/236 (20%)

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGF-LTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           +P   L     G + T+ DP CG G   L      V                GQ+ +P T
Sbjct: 150 EPIAELMARLAGPVSTILDPACGFGALALASGAKTVL---------------GQDSDPMT 194

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKD 310
            ++    + +R LE +        +     L +D F G+     L +PPF ++ W  D+ 
Sbjct: 195 ASIAALRLRLRGLEVE--------VHAVDALREDAFAGRTAEAVLCDPPFNERAWGHDEL 246

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             +         R+  GLP   +  + ++ H    +E  P G     ++L        R+
Sbjct: 247 VGDA--------RWEYGLPPRGEPELAWVQHCLAHVE--PGG---TVVILMPGAAAGRRS 293

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           G     IR  LL    + A+V L       T     LW+L      ER     L+ 
Sbjct: 294 G---KRIRGNLLRAGAVRAVVTL-------TPTGPDLWLLRRPAPGERAPSTVLLG 339


>gi|38505785|ref|NP_942404.1| type I restriction-modification system M subunit [Synechocystis
          sp. PCC 6803]
 gi|38423809|dbj|BAD02018.1| type I restriction-modification system M subunit [Synechocystis
          sp. PCC 6803]
          Length = 59

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 7  SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV 55
          S  ++ NFIW  A+D+  D +    +  VILP T++RRL+  LEP++  V
Sbjct: 5  SHNNIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDAVLEPSKEKV 54


>gi|114332400|ref|YP_748622.1| type I restriction-modification system [Nitrosomonas eutropha
          C91]
 gi|114309414|gb|ABI60657.1| type I restriction-modification system [Nitrosomonas eutropha
          C91]
          Length = 92

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 11 LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
          +++ IW  A+D   D +    +  VILPFT+LRRL+  LE T+ AV E+
Sbjct: 15 ISDLIWNIADDRLRDMYVRGKYRDVILPFTVLRRLDAVLESTKQAVLER 63


>gi|193076416|gb|ABO11078.2| hypothetical protein A1S_0629 [Acinetobacter baumannii ATCC 17978]
          Length = 1516

 Score = 41.2 bits (95), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 106/275 (38%), Gaps = 39/275 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           + F TP  +  +   LL +P      E+    +TL +PT G G  +           +H 
Sbjct: 286 QQFSTPITISAICQKLLFNP------ETLDTGKTLLEPTIGNGSLV-----------AHF 328

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P L   G E++           L   +E    R +  +  +     K L   + F +
Sbjct: 329 IKKPQLKIVGVEIDS-NRVKNTQLFLDANIEHSNLRVIEGDYSKIKL--KQLNNNELFDF 385

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFGK    DK  +   ++ G L R      ++    +L  + L           G
Sbjct: 386 TIANPPFGK---IDKTTLTL-NQAGSLERLNFSTQRLDHKILLETLSLR-------KDKG 434

Query: 355 RAAIVLSSSPLFN-GRAGSGESEIRRWLLENDLIEAIVALPTDLF----FRTNIATYLW- 408
           R+  ++ S   +  G    G   +  +L +N  +EA V L   L+     R N+   +  
Sbjct: 435 RSVFIIGSDSFYEAGVVKGGSKNLLNYLYDNYNVEAAVELDGSLYKKQGTRVNVRVLVIG 494

Query: 409 -ILSNRKTEERRGKVQLI-NATDLWTSIRNEGKKR 441
            +L N +T E   ++ +I N  DLW    N  +KR
Sbjct: 495 DLLENNRTYEVPHELPIINNVQDLWRWSENVLQKR 529


>gi|167039870|ref|YP_001662855.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514]
 gi|300915312|ref|ZP_07132626.1| type I restriction-modification system M subunit
          [Thermoanaerobacter sp. X561]
 gi|166854110|gb|ABY92519.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514]
 gi|300888588|gb|EFK83736.1| type I restriction-modification system M subunit
          [Thermoanaerobacter sp. X561]
          Length = 69

 Score = 41.2 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 10 SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAV 55
          S+ NFIW  A+D   D +    +  VILP T++RRL+  LE T+ AV
Sbjct: 8  SIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEETKPAV 54


>gi|291545711|emb|CBL18819.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   +LS       ++   L+NPPF       K +++ E  +G+L +    + K     
Sbjct: 32  IEYRDSLSDQNADKDQYSLVLANPPF-------KGSLDAESVSGDLLK----VCKTKKTE 80

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +LFL      +++    GGR A ++    LF   +      IR+ ++EN  +EA++++P+
Sbjct: 81  LLFLALFLRIMKI----GGRCACIVPDGVLFG--SSRAHKSIRKEIVENQRLEAVISMPS 134

Query: 396 DLF 398
            +F
Sbjct: 135 GVF 137


>gi|329941157|ref|ZP_08290436.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045]
 gi|329299688|gb|EGG43587.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045]
          Length = 680

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 35/230 (15%)

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           L  E  G  RT+ DP CGTG  L  A+    +   + +     +     L    H     
Sbjct: 194 LMAELAGPARTVLDPACGTGALLR-ALGRAPEQSLYGQDAAPELAALAALRLALHTRA-- 250

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEH 316
             L+R                G +L  D     R    L +PPF ++ W  ++ A +   
Sbjct: 251 --LVR-------------AAAGDSLRADAHESLRADVVLCHPPFNERNWGHEELAYDP-- 293

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+  GLP  ++  + ++ H   +L+   +GG  +A++L      + R+G     
Sbjct: 294 ------RWEYGLPARTESELAWVQHALARLK---DGG--SAVLLMPPAAASRRSG---RR 339

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           IR  LL    + A+VALP        +  +LW+L        + +V L++
Sbjct: 340 IRADLLRRGALRAVVALPAGAAPPHGVPLHLWVLRRPDRAPAQPRVLLVD 389


>gi|227485430|ref|ZP_03915746.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236560|gb|EEI86575.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 642

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 29/211 (13%)

Query: 207 RTLYDPTCGTGGFLTDAM-NHVADC------GSHHKIPPILVP----HGQELEPETHAVC 255
           + ++D  CG+G FL  AM   +ADC       +  +I    +     +G E+E     + 
Sbjct: 318 KRVFDGACGSGSFLVQAMVKELADCDKARITDAEKQILKENIKKNNIYGVEIEETAFGLS 377

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
              MLI         D + NI+  S   S++ F        L NPP+  K       +  
Sbjct: 378 TTNMLI-------HGDGNSNIKLASLFDSEEFFIEANPDIVLMNPPYNAK----PRTIPG 426

Query: 315 EHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           ++K G       G    S G     F+     K+ +     G+A   +  + L    A  
Sbjct: 427 KYKIGWKPNQINGKEDPSKGFSFAEFISDCVKKININRVNDGKAKKEVKLAILLPVSAAI 486

Query: 373 GESEI----RRWLLENDLIEAIVALPTDLFF 399
           G + I    +  +LE++ +EA+  LP ++F+
Sbjct: 487 GSNNILKSAKEKMLEDNTLEAVFTLPNEVFY 517


>gi|94995074|ref|YP_603172.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548582|gb|ABF38628.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 263

 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 8/73 (10%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-S 202
           E+  + V    + + YE+LI  F SE  + A +F TP+ V HL T ++      L +E  
Sbjct: 163 EIDFEAVDGDTLGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVF-----LGREDQ 217

Query: 203 PGMIRTLYDPTCG 215
            GM  TLYDP  G
Sbjct: 218 KGM--TLYDPAMG 228


>gi|301062619|ref|ZP_07203251.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300443299|gb|EFK07432.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+    +    G   F TPR ++ L   L+           P +   + DP 
Sbjct: 172 IQGDVYEYLLSEIATAGKNG--QFRTPRHIIKLIAELV----------RPKLGHRIADPA 219

Query: 214 CGTGGFLTDAMNHVA 228
           CGTGGFL  A  ++ 
Sbjct: 220 CGTGGFLLGAYQYIV 234


>gi|330467197|ref|YP_004404940.1| hypothetical protein VAB18032_16170 [Verrucosispora maris
           AB-18-032]
 gi|328810168|gb|AEB44340.1| hypothetical protein VAB18032_16170 [Verrucosispora maris
           AB-18-032]
          Length = 696

 Score = 40.8 bits (94), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           ++ G +L  D     R    ++N PFG   W  D+ A +         R+  GLP  ++ 
Sbjct: 269 VRVGDSLLADALPDLRADVVVANFPFGIHDWGHDRLAYDP--------RWTYGLPPRTEP 320

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + ++ H    L   P+G    A+VL      +  AG     +R  L+    + A+VALP
Sbjct: 321 ELAWVQHALAHLA--PSG---TAVVLLPPAAASRPAGR---RVRAELIRRGALRAVVALP 372

Query: 395 TDLFFRTNIATYLWILS 411
             L   T I  ++W+L+
Sbjct: 373 AGLMPPTAIGLHIWVLT 389


>gi|307822216|ref|ZP_07652448.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum
           SV96]
 gi|307736782|gb|EFO07627.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum
           SV96]
          Length = 101

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           T+YDP C + G LTD+ + +       K    +  +G+E+ PET+ +C + M I+
Sbjct: 18  TIYDPACSSSGMLTDSKDEI-------KAKAGVYLYGKEINPETYGICKSDMRIK 65


>gi|166363242|ref|YP_001655515.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166085615|dbj|BAG00323.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 352

 Score = 40.8 bits (94), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           AG  E ++R+ L+E   ++ ++A+ ++ F+  ++   LW L+  K  E + K+ +I+A +
Sbjct: 8   AGRDEGKVRQKLIETGTVDIMIAIRSNFFYTRSVPCELWFLNRGKPAELQDKILMIDARN 67

Query: 430 LWTSIRNEGKKRRIIND---DQRRQILDI 455
           ++  +       R IND   +Q + IL I
Sbjct: 68  IYRKV------NRTINDFSPEQLQNILSI 90


>gi|149391960|emb|CAL68657.1| restriction-modification enzyme [Pseudomonas putida]
          Length = 1289

 Score = 40.8 bits (94), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 122/306 (39%), Gaps = 44/306 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + A +L K+ + +  I L      ++ + +++E  + + G + SEG   F TP  +    
Sbjct: 376 QNADVLLKLLQMWQDIRLTNANGHNQFLGDMFEGFLDQ-GVKQSEG--QFFTPMPICRFI 432

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L+  P ++L +++P     + D  CG G FLT+            ++ P+L  H  + 
Sbjct: 433 --LMSLPLESLVRDNPTPPMAI-DYACGAGHFLTELA---------LQLQPLLEQHKPQA 480

Query: 248 EP-ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--------SKDLFTGKR---FHYC 295
            P E H   V      RL    +       QQG  +        S + F   R   F   
Sbjct: 481 NPAEYHKSMVGIEKEYRLSKVAKVSAFMYGQQGIQVCYGDGLVNSHEAFPDIRDGHFDLL 540

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-----LFLMHLANKLELPP 350
           ++NPP+  +   +    E+E K   L         I+D         F +  A +L    
Sbjct: 541 VANPPYSVRGFLET-LPEEERKAYSLA------DTINDAETANSIETFFVERAKQL---L 590

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG AAI+L S+ L NG  GS  +  R  LL+   I AI    +  F +T   T    L
Sbjct: 591 KSGGVAAIILPSAILSNG--GSTYTRAREILLQYFDIVAIAEFGSGTFGKTGTNTVTLFL 648

Query: 411 SNRKTE 416
             + T+
Sbjct: 649 RRKPTQ 654


>gi|260589500|ref|ZP_05855413.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583]
 gi|331082930|ref|ZP_08332050.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540068|gb|EEX20637.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583]
 gi|330399925|gb|EGG79583.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G AA++++   L        E  +R  ++ ND +EA++ LP +L+ +    T L I +  
Sbjct: 261 GTAAVLVTPGAL----TRVNEEILREQIVVNDWLEAVITLPENLYSKYYAGTELLIFNKD 316

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           K   R+GKV  I   D+    + +G++   I +    Q+ +I+V
Sbjct: 317 KESSRKGKVIFI---DISKEFKRQGRRTVEITEAGLLQVREIFV 357


>gi|148656519|ref|YP_001276724.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1]
 gi|148568629|gb|ABQ90774.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1]
          Length = 792

 Score = 40.8 bits (94), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 22/101 (21%)

Query: 208 TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELE-------------P 249
           T+ DPTCG+G FL  A + +A         H     + VP GQ L              P
Sbjct: 292 TVLDPTCGSGAFLCAAFDLLAHLMRIVVERHTAGSVVSVPVGQRLRAIIERTLYGVDVMP 351

Query: 250 ETHAVCVAGMLIRRL----ESDPRRDLSKNIQQGSTLSKDL 286
           E   +C   + +R      + DP RDL  NI  G  L+  L
Sbjct: 352 EAAEICRMSLWLRLAALVDDPDPLRDLRFNIHTGDALTGTL 392


>gi|282860339|ref|ZP_06269407.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
 gi|282586837|gb|EFB92074.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
          Length = 811

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 54/263 (20%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D +   +YE  ++   S +    + + TPR++V                  P +   + D
Sbjct: 283 DDIKGAVYEIFLK---STLRGDFDQYFTPREIVDFIVKY----------ADPKIGDKILD 329

Query: 212 PTCGTGGFLTDAMNHV---------ADCGSHHKIPPIL--VPHGQELEPETHAVCVAGML 260
           P CG+GGFL  +  +V         ++     K   ++     G E + + H +    ++
Sbjct: 330 PACGSGGFLIQSFLYVNQKIIDTPCSELDRKLKFNELIDKCLWGGEADEDLHVLAKINLI 389

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +         D   NI QG +LS        F+  L+NPPF   +   KD + K     E
Sbjct: 390 MHG-------DGYNNIYQGDSLSNKKLPNDTFNLILTNPPFTIPYTF-KDILNKY----E 437

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS----PLFNGRAGSGESE 376
           +G+         +  +LF+      L+     GG   IVL       P +          
Sbjct: 438 MGQNRES----QELDILFVEKCIRALD--AKAGGEMYIVLPEGLLNLPYYQN-------- 483

Query: 377 IRRWLLENDLIEAIVALPTDLFF 399
            R+WLL    I   ++LP   F 
Sbjct: 484 FRKWLLGKCYITLSISLPEGAFI 506


>gi|328765965|gb|EGF76048.1| hypothetical protein BATDEDRAFT_93094 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 153

 Score = 40.4 bits (93), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +Y P CG+G     ++  +    +HH     +  +GQE    T+ +    + IR + ++ 
Sbjct: 9   IYGPACGSGEMFVQSVKFIE---AHHGNTKDISIYGQEYTNTTYKMAKMNLAIRGISAN- 64

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
             ++++N     T+SKD     +  + ++NPPF  K+W     A  + H +      G  
Sbjct: 65  LGNMAEN-----TVSKDQHKDLKVDFIMANPPFNQKQWR----AANELHDDPRWA--GYD 113

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +P   + +  +++++ +KL       G A  +L++  L + R
Sbjct: 114 VPPTGNANYAWILNIVSKLSE----NGVAGFLLANGALRDSR 151


>gi|325577622|ref|ZP_08147897.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160367|gb|EGC72493.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 615

 Score = 40.4 bits (93), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 42/227 (18%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNHVA-DCGSHHK 235
           TP  +VH    ++            G+ R   + DP CG+G FL  A+     DC +  +
Sbjct: 304 TPDHIVHFMCKVV------------GVNRNSVVLDPCCGSGAFLVRALTEAMDDCNTESE 351

Query: 236 IPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRF 292
              I     +G E E     +    MLI         D + NI+QG+  L     + K  
Sbjct: 352 REKIKSSQIYGIEYEETAFGLATTNMLI-------HGDGNSNIKQGNCFLELKELSTKGI 404

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +  L NPP+           +++H + E +  +   + +       F+  +A+ +     
Sbjct: 405 NVVLMNPPYN---------AQRKHCDPEYVESWSEKIKEDPTKGFHFVYKVASYIRT--- 452

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             G+ A++L         A S     ++ +L+   ++A+ + P+D+F
Sbjct: 453 --GKLAVLLPMQCAIG--ASSDIQTYKKKMLDEHTLDAVFSFPSDIF 495


>gi|289811268|ref|ZP_06541897.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 202

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           D    I+ G+TL  D     +     +NPPFG     +                   +  
Sbjct: 5   DHGGAIRLGNTLGSDGENLPQADIVATNPPFGSAAGTNITRTF--------------VHP 50

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+  + F+ H+   L      GGRAA+V+  + LF+ R G    EIRR L++   +  I
Sbjct: 51  TSNKQLCFMQHIIETLRP----GGRAAVVVPDNVLFD-RVGL---EIRRDLMDKCHLHTI 102

Query: 391 VALPTDLFFRTNIATYLWILS 411
           + LPT +F+   + T +   +
Sbjct: 103 LRLPTGIFYAQGVKTNVLFFT 123


>gi|25026603|ref|NP_736657.1| hypothetical protein CE0047 [Corynebacterium efficiens YS-314]
 gi|259508264|ref|ZP_05751164.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23491882|dbj|BAC16857.1| hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164152|gb|EEW48706.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 604

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 44/263 (16%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           P   +T+ D  CG GG L            HH+ P   +  G ++    +A  +A    R
Sbjct: 168 PTEPKTVLDFACGAGGTLQ---------AIHHRFPEATL-QGNDI----NATALATAQAR 213

Query: 263 RLESDPRRDLS-KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            +  +     + ++I +   L  D      F    SNPPFG        AV KE    + 
Sbjct: 214 AIPGNWTATWTHRDIIEAGALPAD-----SFDLVCSNPPFGL-------AVNKECLEEQP 261

Query: 322 GRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            R+  G+P  +D S  L L H A          G A I + +S L   R GS        
Sbjct: 262 DRWPYGVPSRNDDSKWLQLAHHAL------TDSGLAIINVFNSALHARRHGSALPA---- 311

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           ++ +  + A++ALP +LF  T I + L + +  K  +      L    D  +  ++ GK 
Sbjct: 312 MVADGSLLAVIALPDNLFSNTAIPSALVVFT--KNPDNVSDTVLFATVDAASRHKSLGKV 369

Query: 441 RRIINDDQRRQILDIYVSRENGK 463
             +  DD    +++ Y +   G+
Sbjct: 370 SALDTDD----LVEAYTAHMAGE 388


>gi|268318892|ref|YP_003292548.1| putative type II restriction endonuclease [Lactobacillus johnsonii
           FI9785]
 gi|262397267|emb|CAX66281.1| putative type II restriction endonuclease [Lactobacillus johnsonii
           FI9785]
          Length = 923

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 35/149 (23%)

Query: 208 TLYDPTCGTGGFLT-----------DAM-----NHVADCGSHHKIPPILVPHGQELEPET 251
           T +DP CG+G FLT           DA+     N   D G    I  + +     +E   
Sbjct: 381 TFFDPACGSGNFLTETYLQLRRLENDAIKLIYPNPSLDVGQAQDIIKVSIQQFYGIEIND 440

Query: 252 HAVCVAGMLIRRLES---DPRRDL------------SKNIQQGSTLS---KDLFTGKRFH 293
            AV VA   +   ES   +  +D+              NI +G+ L     D+      H
Sbjct: 441 FAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTNIHEGNALRIYWNDVLPNYACH 500

Query: 294 YCLSNPPF-GKKWEKDKDAVEKEHKNGEL 321
           Y + NPPF G K+E +    +  H + +L
Sbjct: 501 YVMGNPPFIGTKYESEDQKEDISHLSKKL 529


>gi|256855107|ref|ZP_05560468.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8]
 gi|256709620|gb|EEU24667.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8]
          Length = 682

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 14/123 (11%)

Query: 362 SSPLFNGRAGSGE-SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERR 419
           +S +  G AGSG+ SEI + +L+++ + A + +P DLF  ++++ TY+++    +  E  
Sbjct: 510 ASVIIQGSAGSGKASEINKEILKSNRLLASIKMPIDLFVGKSSVQTYIYVFRVGEAHEND 569

Query: 420 GKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
             VQ I+ T+   +  N  K    + D D  ++           K+  ++D   +G  ++
Sbjct: 570 YTVQFIDFTNDGYTRSNRKKSSNNLRDTDHAKE-----------KYQEVVDLVKYGKSKL 618

Query: 479 KVL 481
           + L
Sbjct: 619 QYL 621


>gi|322513587|ref|ZP_08066687.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976]
 gi|322120658|gb|EFX92552.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976]
          Length = 802

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 132/320 (41%), Gaps = 58/320 (18%)

Query: 110 NAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-----VMSNIYEHL 162
           NA  +   F+F  S+     +K GLL  +    + I+ +  T  D+      +S  Y   
Sbjct: 244 NADTVLGAFNFIRSNKTFEDDKTGLL-NLLSVINSIKDNVYTFLDKYKYIDTLSQFYIEF 302

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPTCGTGGFL 220
           +R   ++  +G    +TP   +H+A          LF +  G+ +   + D   GTGGFL
Sbjct: 303 LRYANTD--KGLGIVLTP---LHIA---------QLFAKMAGVNKDTVVLDNAAGTGGFL 348

Query: 221 TDAMNH-VADCGSHHKIPPIL-----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             AM   + D G   K   IL       +G E E    A+ V+ M+I    SD R     
Sbjct: 349 VAAMGEMILDAGDDEK--KILDIKKNQIYGIEYEDSILALLVSNMIIH---SDGRS---- 399

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGK-------KWEKDKDAVEKEHKNGELGRFGPG 327
           NI  G++   D+   K   Y   N    +       K+E     +  +    ++G   P 
Sbjct: 400 NIYWGNSF--DIIPDKLLKYKDYNKNKKEDEIIQSLKYEN----INLDENKIDVGLLNPP 453

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +D +  F    +N L     GG   A++ +S  + N  +G      ++ LL N  +
Sbjct: 454 FKMATDDTEEFEFIFSN-LNAIKKGGTVIALIPTS--VINDTSGVNYIN-KKKLLRNHTL 509

Query: 388 EAIVALPTDLFF--RTNIAT 405
           EA+V+LP DLF   +T+I T
Sbjct: 510 EAVVSLPEDLFANSKTSIVT 529


>gi|282882715|ref|ZP_06291322.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis
           315-B]
 gi|281297376|gb|EFA89865.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis
           315-B]
          Length = 269

 Score = 40.0 bits (92), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
           D+ K +F+D D +S+  RL     EK   L  I +    I        D     + Y +L
Sbjct: 132 DDIKGLFDDIDMTSS--RLGGSVSEKNKRLADIIEGIGQINFKDFRNNDIDTFGDAYLYL 189

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           I ++ +   +   +F TP+ V  L   L++D            I  +YDPTCG
Sbjct: 190 ISKYATNAGKSGGEFFTPQTVSKLLARLVMD--------GKNKINKVYDPTCG 234


>gi|172039720|ref|YP_001799434.1| hypothetical protein cur_0040 [Corynebacterium urealyticum DSM
           7109]
 gi|171851024|emb|CAQ04000.1| hypothetical protein cu0040 [Corynebacterium urealyticum DSM 7109]
          Length = 156

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPT 213
           M+++ E L+ R  SE  + A  F  PRD   L   +LL  D    + + P   RT+Y P 
Sbjct: 1   MAHLSEDLMYRSSSENWQVAVGFDIPRDTSRLMVDVLLSCDGHGFYGQVPA--RTVYSPA 58

Query: 214 CGTGGFLTDAMNHVAD 229
            GTGG L  A   + D
Sbjct: 59  AGTGGILLVAKRAMED 74


>gi|170718170|ref|YP_001785196.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826299|gb|ACA31670.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 513

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 89/229 (38%), Gaps = 41/229 (17%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +    T  ++D  +  F E       ++DP CG+  FL  A    A   +H   
Sbjct: 197 FFTPTPI----TDFIIDVMNLKFGEH------VFDPACGSADFLVAAF-QTARKFNHGHA 245

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I    G +       V +  M+   L  D + ++ K I    T++ D    K+++  L
Sbjct: 246 DYIW---GNDNSDNAVQVAILNMV---LNGDGKTNIKK-IDSLETINDDY---KQYNLIL 295

Query: 297 SNPPFGKKWEKDKDAVEKEHKNG-----ELGRF---GPGLPKISDGSMLFLMHLANKLEL 348
            NPPFG K  + +  V K    G     E   F      L    +  +LF+     K + 
Sbjct: 296 CNPPFGSKILERRTEVLKNFDLGFQWILEKNTFILDKNSLLSQQESGLLFVELCVRKAK- 354

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALP 394
                GR AI+L      NG  G+   +    R WLL +  I  I ALP
Sbjct: 355 ---KEGRIAIILP-----NGYLGNHSEKFLIFREWLLRHVKIAGICALP 395


>gi|241758670|ref|ZP_04756784.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114]
 gi|241321181|gb|EER57377.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114]
          Length = 692

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 18/130 (13%)

Query: 354 GRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS 411
           G AAI++ +S      AGSG++ EI R +L+N+ + A + +P DLF  ++++ T +++  
Sbjct: 518 GYAAIIIQNS------AGSGKAREINRRILQNNTLFASIKMPLDLFIGKSSVQTNIYVFK 571

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +  E+   V+ I+ +D   +  N  K    + D               G++  ++   
Sbjct: 572 VGEPHEKDETVKFIDFSDDGYTRTNRKKASNNLKD----------TGNARGRYEELVQLV 621

Query: 472 TFGYRRIKVL 481
            FG +++ + 
Sbjct: 622 RFGKKKLNIF 631


>gi|313676045|ref|YP_004054041.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126]
 gi|312942743|gb|ADR21933.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126]
          Length = 620

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 16/103 (15%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L+   +LY + K F  I++     P  ++ + ++ L+   G  +      F TP+ VV 
Sbjct: 83  QLDDISVLYALNK-FQEIDI--SNSPAHIIGDAFQTLV---GPNLRGDKGQFFTPKSVVS 136

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
               LL          SP    T+ DP CGT GFL +++  ++
Sbjct: 137 SMVKLL----------SPKANHTICDPACGTAGFLIESITQIS 169


>gi|270685245|ref|ZP_06222844.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270316187|gb|EFA28160.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 112

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 15/113 (13%)

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G+TL +  F   K F   +SNPP+  KW    D      +     RF P   L   
Sbjct: 12  DIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPK 66

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N
Sbjct: 67  SKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDN 112


>gi|313896499|ref|ZP_07830050.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974923|gb|EFR40387.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 798

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 10/51 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           F TPR +V   T +L DP +            + DPTCG+GGFL  A  +V
Sbjct: 317 FFTPRTIVDFMTEIL-DPQEG---------EVICDPTCGSGGFLIKAFEYV 357


>gi|124004979|ref|ZP_01689822.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
 gi|123989657|gb|EAY29203.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
          Length = 504

 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVPHGQELEPETHAVCVAGM--LI 261
           + + DP+CG G FL + +  +       K   +  +    G +++ E   +C++ +  L+
Sbjct: 41  KKILDPSCGDGQFLKEIVKRILKESPSDKEAILENLSKVRGMDIDEEAIKICISDLNKLV 100

Query: 262 RRLESD-PRRDLSK---NIQQGSTLSKDLFTGKRFHYCLSNPPF 301
                + P +++SK   NIQ  +TLS+     +RF + + NPP+
Sbjct: 101 EPYGINFPSKNVSKFDWNIQSENTLSQIDKGRERFEFIVGNPPY 144


>gi|145642017|ref|ZP_01797589.1| putative type I restriction-modification system,
          methyltransferase subunit [Haemophilus influenzae
          R3021]
 gi|145273288|gb|EDK13162.1| putative type I restriction-modification system,
          methyltransferase subunit [Haemophilus influenzae
          22.4-21]
          Length = 90

 Score = 39.7 bits (91), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 11 LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
          L +FIW  A+D   D +    +  VILP  +LRRL+  LEP++ AV E+
Sbjct: 9  LVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEE 57


>gi|315222591|ref|ZP_07864480.1| type I restriction modification DNA specificity domain protein
           [Streptococcus anginosus F0211]
 gi|315188277|gb|EFU22003.1| type I restriction modification DNA specificity domain protein
           [Streptococcus anginosus F0211]
          Length = 537

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 37/166 (22%)

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDA--VEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           FT ++F   LS P FG + + D+ +  + +E+                       M  A 
Sbjct: 184 FTSEKFDLILSVPVFGVRDKADESSEFICREYD----------------------MIAAE 221

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L L     G  +IVL +   F   AG    E+R +L     ++ I  LP+ +F  T + 
Sbjct: 222 NLALHLKSEGILSIVLPAKITF---AGGTVKELREFLQSMYCLKEISDLPSGIFDNTGVK 278

Query: 405 TYLWILSNRKTEE---RRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           T+L I++  +T+E   +R   +  NA       R  G K+ ++ DD
Sbjct: 279 TFLLIITTGRTDEVTIKRFVFEDENA-------RKTGNKKLVVQDD 317


>gi|326777761|ref|ZP_08237026.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658094|gb|EGE42940.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 552

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 41/226 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHGQELEPETHAVCVAGMLIRRLE 265
            + DP CG G  L               + P   LV  GQ+++P    +  A   +   +
Sbjct: 168 VVLDPACGIGTLLL-------------SVGPTEGLVRRGQDIDPAAAGLAGARAELAGQQ 214

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP-FGKKWEKDKDAVEKEHKNGELGRF 324
                     I+ G +L  D +   R    L +PP  G  W +++  ++         R+
Sbjct: 215 D-------TVIETGDSLRHDHWPDLRADLVLCDPPTAGPDWGREELLLDS--------RW 259

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P  ++G + +L H           GGR   V+ +S  +  +AG     IR  ++  
Sbjct: 260 ELGTPSKAEGDLAWLQHCYAHT----APGGRVVAVMPASVAYR-KAGR---RIRAEMVRR 311

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            ++  +VALP  +        +LWIL  R+  +  G  + +   DL
Sbjct: 312 GILTEVVALPPGMVASHAQPVHLWIL--RRPADASGGSESVRMVDL 355


>gi|89899860|ref|YP_522331.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89344597|gb|ABD68800.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 516

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 104/267 (38%), Gaps = 57/267 (21%)

Query: 148 DTVP--DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           D VP  DR    ++YE+++    S    G   F TPR ++ L   +           +P 
Sbjct: 138 DHVPMEDRDTKGDLYEYMLSNIASAGQNG--QFRTPRHIIRLMVEMT----------APT 185

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPETH 252
               + DP  GT GFL     ++ +     K P IL            + HG + +    
Sbjct: 186 AKDVICDPASGTCGFLVATGEYLRE-----KHPEILRNPASREHFHHGMFHGFDFDNTML 240

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDA 311
            +    M +  +++        +I+   +L++D    + R+   L+NPPF    + +  A
Sbjct: 241 RIGSMNMALHGVDN-------PDIRYQDSLAQDHAGDEGRYSLILANPPFAGSLDYENTA 293

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            +              L  +       L        L P  GGRAA+++    LF   + 
Sbjct: 294 KDL-------------LAIVKTKKTELLFLALFLRLLKP--GGRAAVIVPDGVLFG--SS 336

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF 398
               E+RR ++E   ++A+++LP+  F
Sbjct: 337 KAHKELRRMIVEEQKLDAVISLPSGAF 363


>gi|229491839|ref|ZP_04385660.1| type II restriction-modification system DNA adenine-specific
           methylase [Rhodococcus erythropolis SK121]
 gi|229321520|gb|EEN87320.1| type II restriction-modification system DNA adenine-specific
           methylase [Rhodococcus erythropolis SK121]
          Length = 589

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 44/213 (20%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           +  + DP C  G  L    +   D     ++  +    GQ+++ E  A   A +L+R   
Sbjct: 137 VPIVLDPACAGGTVLAAVADLFGD-----RVALV----GQDIDEE--AASEAALLLRGRP 185

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL-------SNPPFGK-KWEKDKDAVEKEHK 317
            D R D    +Q G     D F   RF   L         PP G+ +W  D+ A +    
Sbjct: 186 DDVRYD----VQSG-----DSFLDNRFEKYLGEAAAVVCEPPLGQSRWPMDELATDP--- 233

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                R+  G+P   +  + ++ H    L      GG A +++S          S    I
Sbjct: 234 -----RWEFGIPSARESELAWVQHCYAHLR----PGGVAVVMVSMRTCMQ----SSGQHI 280

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           R  L+   ++  ++ALP+ L    +   Y+W+L
Sbjct: 281 RAALVRAGVLRDVIALPSGLGSLPDTDLYVWVL 313


>gi|225352841|ref|ZP_03743864.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156330|gb|EEG69899.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 63

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           G   IVL    LF G     E +IR+ L+EN  I+AI+ LP ++FF T I
Sbjct: 6   GIMTIVLPHGVLFRG---GEEGQIRKNLIENRHIQAIIGLPANIFFGTGI 52


>gi|182438223|ref|YP_001825942.1| putative restriction-modification system adenine methylase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178466739|dbj|BAG21259.1| putative restriction-modification system adenine methylase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 823

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 88/236 (37%), Gaps = 35/236 (14%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           +TP  +  L   L   P D     S   +R++ DP  GTG  L       A         
Sbjct: 304 LTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAGTGSLLRAVTGPAAL-------- 355

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRD--LSKNIQQGSTLSKDLFTGKRFHYC 295
                + QE       +     L   L +D  RD   S  ++ G TL  D F        
Sbjct: 356 -----YAQE---ADAGLAALTALRLALCADATRDAPASPAVRTGDTLRADAFPRLATDTV 407

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           L +PPF  + W  D+ A +         R+  G P   +  + ++ H   +L    +GG 
Sbjct: 408 LCHPPFNDRNWGHDELAYDP--------RWEYGFPARVESELAWVQHALARLR---DGG- 455

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             A++L      + R+G     IR  LL    + A++ALP        I  +LW+L
Sbjct: 456 -TAVLLMPPAAASRRSG---RRIRADLLRRGALRAVIALPAGAAPPYGIPLHLWVL 507


>gi|224418935|ref|ZP_03656941.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 266

 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           L ILS ++ +    KV  I+A   +     EGK  R+ N D+   I D Y+S+++   SR
Sbjct: 14  LLILSKQENK----KVFFIDAQKFYLK---EGKYNRLTNIDR---IYDEYLSKQDSDISR 63

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQSFWLDILKPMMQQ 525
           ++DYR       K     +   I D   L   LE     +++        +D     ++ 
Sbjct: 64  LVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKDEVLMDCYNVGIKD 123

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVK 551
              YG++E F++ S KS++ +  K++
Sbjct: 124 FEDYGFSEVFLEFSPKSDQKRIEKLR 149


>gi|237653839|ref|YP_002890153.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625086|gb|ACR01776.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 512

 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 60/282 (21%)

Query: 131 GLLYKICKNFSGIELHPDTVPDR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           GLL K+      + +      DR    ++YE+++ +  +    G   F TPR ++ L   
Sbjct: 128 GLLAKVVDMLDHVPME-----DRDTKGDLYEYMLGKIAAAGQNG--QFRTPRHIIKLMVE 180

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------------HHKIP 237
           L           +P     + DP  GT GFL  A  ++ +               HH + 
Sbjct: 181 L----------TAPAPKDVICDPASGTCGFLVAAGEYLREKHPALFNDAPAREHFHHGMF 230

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCL 296
                HG + +     +    M +  +++        +I+   +L++D    + ++   L
Sbjct: 231 -----HGYDFDNTMLRIGSMNMALHGVDN-------PDIRYKDSLAQDHAGDEEKYSLIL 278

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    + +  A +              L  +       L        L P  GGRA
Sbjct: 279 ANPPFAGSLDYENTAKDL-------------LALVKTKKTELLFLALFLRLLKP--GGRA 323

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           A+++    LF   +     E+RR ++E   ++A+++LP+  F
Sbjct: 324 AVIVPDGVLFG--SSKAHKELRRMIVEEQKLDAVISLPSGCF 363


>gi|71275696|ref|ZP_00651981.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Dixon]
 gi|71897848|ref|ZP_00680074.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Ann-1]
 gi|71163587|gb|EAO13304.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Dixon]
 gi|71732403|gb|EAO34457.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Ann-1]
          Length = 265

 Score = 38.9 bits (89), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMI 206
           D  PD  +   YE+L+R+F     + A +  TP ++  L   +L   P DA         
Sbjct: 74  DVQPD-FLGRAYEYLLRKFAEGSGQSAGELFTPTEMGFLMAHILHPKPGDA--------- 123

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +D  CG+GG L        +     ++P  L   GQEL+ + +A+     +I  +E
Sbjct: 124 --CHDYACGSGGLLIKLQIVAHELDPTSRVPVKL--SGQELQADNYAIAQMNAIIHDME 178


>gi|282866313|ref|ZP_06275359.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282558899|gb|EFB64455.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 717

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 17/145 (11%)

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            ++ G TL  D F        L +PPF ++ W  ++ A +         R+  G P  ++
Sbjct: 276 TVRTGDTLRADAFPRLAADAVLCHPPFNERNWGHEELAYDP--------RWEYGFPARTE 327

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + ++ H  ++L     GG   A++L      + R+G     +R  LL    + A++AL
Sbjct: 328 SELAWVQHALSRLR---EGG--TAVLLMPPAAASRRSGR---RVRADLLRRGALRAVIAL 379

Query: 394 PTDLFFRTNIATYLWILSNRKTEER 418
           P        I  +LW+L    T  R
Sbjct: 380 PAGAAPPYGIPLHLWVLRKPGTGRR 404


>gi|148978844|ref|ZP_01815197.1| putative NAD-glutamate dehydrogenase [Vibrionales bacterium SWAT-3]
 gi|145962155|gb|EDK27440.1| putative NAD-glutamate dehydrogenase [Vibrionales bacterium SWAT-3]
          Length = 1613

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 347  ELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            EL   GGG   R A  +S +P      G+ ++     +  NDLI+AI+++  DL +   I
Sbjct: 1042 ELISQGGGIFSRRAKSISLTPEIQKMLGTKKAS----MAPNDLIKAILSMEVDLLWNGGI 1097

Query: 404  ATYLWILSNRKTE--ERRGKVQLINATDLWTSIRNEG 438
             TY+   S   T+  +R   V  IN  DL   +  EG
Sbjct: 1098 GTYVKSSSETHTDVGDRANDVLRINGGDLKAKVVGEG 1134


>gi|326778874|ref|ZP_08238139.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326659207|gb|EGE44053.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 784

 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 35/246 (14%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           +TP  +  L   L   P D     S   +R++ DP  GTG  L       A         
Sbjct: 265 LTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAGTGTLLRAVTGPAAL-------- 316

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRD--LSKNIQQGSTLSKDLFTGKRFHYC 295
                + QE       +     L   L +D  RD   S  ++ G TL  D F        
Sbjct: 317 -----YAQE---ADAGLAALTALRLALCADATRDAPASPAVRTGDTLRADAFPRLATDTV 368

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           L +PPF  + W  D+ A +         R+  G P   +  + ++ H   +L    +GG 
Sbjct: 369 LCHPPFNDRNWGHDELAYDP--------RWEYGFPARVESELAWVQHALARLR---DGG- 416

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             A++L      + R+G     IR  LL    + A++ALP        I  +LW+L    
Sbjct: 417 -TAVLLMPPAAASRRSG---RRIRADLLRRGALRAVIALPAGAAPPYGIPLHLWVLRRPT 472

Query: 415 TEERRG 420
              R G
Sbjct: 473 PGVRPG 478


>gi|256374368|ref|YP_003098028.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255918671|gb|ACU34182.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 712

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 41/203 (20%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP CG G  L     H+A      + P      G+  +  +  VC A + IR + +D
Sbjct: 228 TVHDPCCGDGRLLVAVAGHLAP-----ESPGAGALSGRAADEVSSRVCAALLGIRGMSAD 282

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            R               D F  + F   +++PP        +     E            
Sbjct: 283 LR------------AHGDGFRCELFDVVVAHPPVTLAPPGGEGPPLGEPS---------- 320

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               + G+ L  +  A + EL P  GGRAA+++  S   +G+AG  +  +RR L+E  ++
Sbjct: 321 ----ARGAGLAWVQHALR-ELAP--GGRAALLVPGS-TASGQAGR-DVAVRRALVEAGVV 371

Query: 388 EAIVALPTDLFFRTNIATYLWIL 410
           E +VALP     R++ A  +W+L
Sbjct: 372 ECVVALPG----RSSRAV-VWVL 389


>gi|20089374|ref|NP_615449.1| hypothetical protein MA0485 [Methanosarcina acetivorans C2A]
 gi|19914268|gb|AAM03929.1| hypothetical protein MA_0485 [Methanosarcina acetivorans C2A]
          Length = 125

 Score = 38.5 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           G +AA+ LS + LF G  G+GE+ IR+ LLE   +  I+ LPT +F+  ++ T L
Sbjct: 22  GKQAAVALSGNVLFEG--GAGET-IRKKLLEITDLHTILRLPTGIFYANSVKTNL 73


>gi|331002121|ref|ZP_08325640.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411215|gb|EGG90631.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 262

 Score = 38.5 bits (88), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  IYE+LI RF S   + A +F TP +V     +LL+    A F      I+ +YDPT
Sbjct: 168 VLGFIYEYLIERFASNAGKKAGEFYTPHEV-----SLLMSEIIAEFLNRRDTIK-IYDPT 221

Query: 214 CG 215
            G
Sbjct: 222 SG 223


>gi|167945633|ref|ZP_02532707.1| type I restriction-modification system, M subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 91

 Score = 38.5 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A++ S S L+  R GS + +IR+ L+E++L++A+V LP  L   T+I   + I    
Sbjct: 10  GRMAVITSLSVLY--RGGS-DGDIRQRLIEHNLLDAVVVLPDRLLPNTSIPIAVLIFRMD 66

Query: 414 KTEERRGKVQLINATDLWTSIRNE 437
           K ++    V  I+A++ +   R +
Sbjct: 67  KPDD---SVLFIDASNDYQFTRGQ 87


>gi|70730332|ref|YP_260071.1| type I restriction-modification system, M subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68344631|gb|AAY92237.1| type I restriction-modification system, M subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 580

 Score = 38.5 bits (88), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 33/216 (15%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELE--PET 251
           AL    PG  + + DP  GTGGF+  A  ++     H ++       + +G  L     +
Sbjct: 191 ALLAPLPG--QRIIDPAAGTGGFMVSAQQYM--LSRHARLSAATKKQIHNGHSLVGIDLS 246

Query: 252 HAVCVAG---MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           H +   G   +L+  +ES      +  +   S  +   +  + + + LS+ PFG +    
Sbjct: 247 HTLARIGWVNLLLHDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVLSDLPFGGR---- 302

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGS------MLFLMHLANKLELPPNGGGRAAIVLSS 362
              ++ +   G    + P   +   G+      +LF+    N L++    GG AA+++  
Sbjct: 303 ---IDPQEAAG--ANYLPFYARDDQGNRSDKVELLFVWRALNLLQV----GGSAALIIPQ 353

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + L  GR+   + ++RR LL    +EA++ LP  +F
Sbjct: 354 N-LLVGRS-QAQIDLRRELLSRHSVEAVILLPGAIF 387


>gi|322372143|ref|ZP_08046684.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253]
 gi|320548152|gb|EFW89825.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253]
          Length = 920

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 89/233 (38%), Gaps = 42/233 (18%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP  GTG     A + + + G+          H   LE  T AV V G  +R L  + 
Sbjct: 322 VLDPASGTGSLTVHAYDRLDELGTRS--------HWDPLERLT-AVDVDGFSLRLLALNL 372

Query: 269 RRDLSKNIQQGS------TLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                 +   G          +D F     T  RF   ++NPP+ ++   +  A ++EH 
Sbjct: 373 ASRGGHDPANGPFAADRFAYHRDFFDLDPDTVGRFDATVANPPYVRQ---ECLAADREHF 429

Query: 318 NGELGRFGPGLPKI-----------SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
              L  FGPG   I           SD    FL H    L      G R A V+ +  + 
Sbjct: 430 REHLADFGPGSDGIYADGEKEIDGRSDLYCYFLTHATGFL----REGARLAWVVPTKWMV 485

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
              A  G S ++R+L ++  +EA+V     LF    + T L +L     E  R
Sbjct: 486 ---ADYGPS-LQRFLYDHYTVEAVVGFRNRLFDDALVDTVLLLLERTDDEAVR 534


>gi|300869710|ref|YP_003784581.1| modification methylase BsuBI [Brachyspira pilosicoli 95/1000]
 gi|300687409|gb|ADK30080.1| modification methylase, BsuBI [Brachyspira pilosicoli 95/1000]
          Length = 406

 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 49/236 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP+ +  L    L++       E    ++ L DP CG+G FL         C  + K 
Sbjct: 28  YFTPKSIRDLLLKELIN-----ISEKKDNVKIL-DPACGSGEFL-------LSCREYFK- 73

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 H    + +   V ++  LI           + +I+   TL  D     ++ Y +
Sbjct: 74  ----NAHMHGFDIDESLVSISKKLIN----------NADIKCLDTLKFDTDKSIKYDYII 119

Query: 297 SNPP-FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            NPP F  K +K++ +  K+  NG +               +F + +   LEL  + G  
Sbjct: 120 GNPPYFEFKLDKEQKSRFKDIINGRVN--------------IFSLFIKIGLELLNDDGYL 165

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFRTNIATYLWIL 410
           A +V    P  N   G+  S++R +++ N  IE + +   +D F+  N    L IL
Sbjct: 166 AYVV---PPSMNN--GAFFSKLREYIINNSSIEYLHIVDGSDNFYMANQKVMLLIL 216


>gi|302380041|ref|ZP_07268520.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312267|gb|EFK94269.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 154

 Score = 38.1 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE------LHPDTVPDRVMSNIYEHL 162
           D+ K +FED D +S+      A    ++C   +GI+         + +      + YE+L
Sbjct: 23  DDIKGLFEDVDTTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDID--AFGDAYEYL 80

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              + S   +   +F T + V  L   L++D   ++ K        +YDPTCG
Sbjct: 81  TSNYASNAGKSGGEFFTLQTVSKLLAKLVMDGKTSINK--------VYDPTCG 125


>gi|194324119|ref|ZP_03057893.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|194321566|gb|EDX19050.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 169

 Score = 38.1 bits (87), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTE-----ERRGKVQLIN 426
           IR+ L+E +L++ IV LP  LF  T I   LW +   RKT+     + R K  LIN
Sbjct: 2   IRKALVEANLVDCIVNLPAKLFLNTQIPASLWFIKRGRKTKDILFIDARNKGHLIN 57


>gi|313142448|ref|ZP_07804641.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
 gi|313131479|gb|EFR49096.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 253

 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           +++   KV  I+A   +     EGK  R+ N D+   I D Y+S+++   SR++DYR   
Sbjct: 5   SKQENKKVFFIDAQKFYLK---EGKYNRLTNIDR---IYDEYLSKQDSDISRLVDYRDLD 58

Query: 475 YRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
               K     +   I D   L   LE     +++        +D     ++    YG++E
Sbjct: 59  EGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKDEVLMDCYNVGIKDFEDYGFSE 118

Query: 534 SFVKESIKSNEAKTLKVK 551
            F++ S KS++ +  K++
Sbjct: 119 VFLEFSPKSDQKRIEKLR 136


>gi|297157985|gb|ADI07697.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces bingchenggensis BCW-1]
          Length = 769

 Score = 38.1 bits (87), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 112/285 (39%), Gaps = 41/285 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF-MTPRDVVHL 186
           + AGL   +      +EL  +T P       YE LI   G  +      + +TP ++  L
Sbjct: 160 DPAGLRPFVPLLRQAVELAAETGP----RETYEFLI---GRHLDANPRQYTVTPPELAEL 212

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             AL    D+     SP    T+ DP  GTGG L   +         H +  +   + QE
Sbjct: 213 MAALAGLADEPTGPLSPAP--TVLDPASGTGGLLWAVLRT-------HSVATL---YAQE 260

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-W 305
           L+ +  A+    + +        +     +  G +L  D          +S+PPF ++ W
Sbjct: 261 LDRDLAALTALRLALTHEG----QGTQVRVHGGDSLRADALPQLAADAVVSHPPFNERNW 316

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             D+ A +         R+  G P  ++  + ++ H    L    +GG   A++L    +
Sbjct: 317 GHDELAYDP--------RWEYGFPARTESELAWVQHALAHLR---DGG--TAVLLMPPAV 363

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            + R+G     IR  LL    + A+VALP        I  +LW+L
Sbjct: 364 ASRRSGR---RIRADLLRRGALRAVVALPAGAAPPYGIPLHLWVL 405


>gi|331669722|ref|ZP_08370568.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
 gi|331063390|gb|EGI35303.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
          Length = 342

 Score = 37.7 bits (86), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 116 ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGING--QFRTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            ++     ++        + +P    T+ DP CGTGGFL  +  ++
Sbjct: 169 HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYL 206


>gi|256396995|ref|YP_003118559.1| NAD-glutamate dehydrogenase [Catenulispora acidiphila DSM 44928]
 gi|256363221|gb|ACU76718.1| NAD-glutamate dehydrogenase [Catenulispora acidiphila DSM 44928]
          Length = 1656

 Score = 37.7 bits (86), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 352  GGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
            GGG   R+A  +  SP      G G S +R  +  N+L+ AI+  P DLF+   I TY+ 
Sbjct: 1085 GGGVYPRSAKSIPISPQVRQALGLGSSVLR--MAPNELLNAILKAPVDLFWNGGIGTYVK 1142

Query: 409  ILSNRKTE--ERRGKVQLINATDLWTSIRNEG 438
              S    E  ++      IN ++L   +  EG
Sbjct: 1143 ASSQSHAEVGDKANDAIRINGSELQARVVGEG 1174


>gi|301063312|ref|ZP_07203857.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300442609|gb|EFK06829.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 1020

 Score = 37.7 bits (86), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 55/273 (20%)

Query: 150 VPDRVMSNIYEHLIRRF---GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           +P   +S IYE  +      G+   + A  + TP  +V+     +L+  +  +    GM 
Sbjct: 284 IPIETLSIIYEQFLHSSEEDGTTKGKKAGAYYTPLPLVNF----VLNELETRYPLVEGM- 338

Query: 207 RTLYDPTCGTGGFLTDAM-----NHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGM 259
           RTL DP+CG+G FL           +A  GS    ++  +LV H   ++ +  A  VA M
Sbjct: 339 RTL-DPSCGSGAFLVQCYRALVEKRLAKNGSILPTELSELLVRHIFGVDRDGDACRVAEM 397

Query: 260 LIRR----------LESDPRRDLSKNIQQGSTL-SKDLF----------TGKRFHYCLSN 298
            +            LE++PR  L   + +GS +   D F              FH+ + N
Sbjct: 398 SLLLTLLDYTDPPDLENNPRFKLP--VLRGSNIFEADFFDPSSKWVARSNNLSFHWLVGN 455

Query: 299 PP---FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PP   F  K ++D+D  E   ++ +    G    +I++  +   + L N+          
Sbjct: 456 PPWREFNSKNQEDRDVREWATQHADSCPVGGN--QIAEAFVWKSLPLLNE-------SAV 506

Query: 356 AAIVLSSSPLFNGRAGSGESE----IRRWLLEN 384
           A IVL +  LF   + +   +    +R W + N
Sbjct: 507 AGIVLPAMTLFKFESANFRKQFFRTVRAWCVAN 539


>gi|72536282|gb|AAZ73197.1| hypothetical protein [Escherichia coli]
          Length = 246

 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 50/222 (22%)

Query: 125 ARLE--KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ARLE  K  LL K  +    + L   DT  D     +YE+L+ +  +    G   F TPR
Sbjct: 34  ARLEIVKPSLLTKAVEVIKNLPLDRGDTKGD-----LYEYLLSKLTTAGING--QFRTPR 86

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S     H +I
Sbjct: 87  HIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHTEI 138

Query: 237 PP---------------ILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRD 271
                            +L P          HG + +     +    +++  +E+ P   
Sbjct: 139 GTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PDIH 197

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAV 312
               + Q  + +    +   F+  L+NPPF G   E+D D+ 
Sbjct: 198 YQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDST 239


Searching..................................................done


Results from round 2




>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040513|gb|ACT57309.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 674/674 (100%), Positives = 674/674 (100%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL
Sbjct: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF
Sbjct: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP
Sbjct: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL
Sbjct: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP
Sbjct: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL
Sbjct: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG
Sbjct: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV
Sbjct: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI
Sbjct: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ
Sbjct: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV
Sbjct: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660

Query: 661 EAQIATLLEEMATE 674
           EAQIATLLEEMATE
Sbjct: 661 EAQIATLLEEMATE 674


>gi|152973655|ref|YP_001338695.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150958437|gb|ABR80465.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 684

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + 
Sbjct: 10  MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 69

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           AF  ++++L++ ++  A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+
Sbjct: 70  AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 129

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 130 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 189

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+  KIPP+
Sbjct: 190 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 249

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 250 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 309

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 310 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 369

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 370 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 429

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G  SRMLDYRTFGYRRI+
Sbjct: 430 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 489

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LDK G+ RLEA+  W KLS  HQ+FW + LKP++ Q  PY WAE+FV  S
Sbjct: 490 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 549

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I
Sbjct: 550 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 609

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 610 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 669

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A+E
Sbjct: 670 VEAEIAALLAEVASE 684


>gi|152969515|ref|YP_001334624.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|294496730|ref|YP_003560423.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae]
 gi|150954364|gb|ABR76394.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339439|gb|ADE43993.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae]
          Length = 675

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + 
Sbjct: 1   MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           AF  ++++L++ ++  A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+
Sbjct: 61  AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+  KIPP+
Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G  SRMLDYRTFGYRRI+
Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LDK G+ RLEA+  W KLS  HQ+FW + LKP++ Q  PY WAE+FV  S
Sbjct: 481 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I
Sbjct: 541 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 601 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A+E
Sbjct: 661 VEAEIAALLAEVASE 675


>gi|78357909|ref|YP_389358.1| type I restriction-modification system DNA methylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220314|gb|ABB39663.1| type I restriction-modification system DNA methylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 675

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/675 (78%), Positives = 589/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE Y 
Sbjct: 1   MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYA 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F  ++++L++ ++  A Y F+NTSEYSL TLGST TR NLE YIA FSDNA+AIFE+FD
Sbjct: 61  TFKDADVELDTILRSTAEYPFFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHP+ VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G   K+PP+
Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK+AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKNAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++DDQRRQILDIY + E    SRMLDYRTFGYRRIK
Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM   LDK G+ RLEAD  W KL   HQ+FW + LKP++ Q   YGWAE+F K++
Sbjct: 481 VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDT 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVKA+K+FI A INAFG KDP A+PVTD NG  +PDT+LT+YENVPY+E I
Sbjct: 541 IKSDEAKQLKVKANKTFIAALINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDAY+D+ F D KD ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 601 DDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A++
Sbjct: 661 VEAEIAALLAEVASK 675


>gi|152998551|ref|YP_001355472.1| N-6 DNA methylase [Shewanella baltica OS185]
 gi|151367565|gb|ABS10564.1| N-6 DNA methylase [Shewanella baltica OS185]
          Length = 675

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 520/675 (77%), Positives = 589/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEF+GSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALE TR  VRE Y 
Sbjct: 1   MTEFSGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALESTREVVREAYD 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F  + ++L+  ++  AGY FYNTSEYSLSTLGST TR NLE YI+ FSDNA+AIFE+F+
Sbjct: 61  NFKDAEVELDPILRQTAGYPFYNTSEYSLSTLGSTKTRRNLEDYISLFSDNARAIFEEFE 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +TI RLEKAGLL+ ICKNF+GI+LHPDTVPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTIIRLEKAGLLFTICKNFAGIDLHPDTVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHVAD G+H+KIPP+
Sbjct: 181 PRDVVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVADYGNHYKIPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI QGSTLS D F G RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNILQGSTLSNDQFAGDRFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE+EHK GELGRFGPGLP+I+DGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKTAVEREHKQGELGRFGPGLPRINDGSMLFLMHLASKLELPKNGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG AGSGESEIRRWLLENDL+EAIVALPTD+FFRTNIATYLWILSN+KT+ R+
Sbjct: 361 LSGSPLFNGGAGSGESEIRRWLLENDLVEAIVALPTDIFFRTNIATYLWILSNKKTDNRK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWT I+NEG KRRI+ DDQRRQILDIY + EN   S+M+DY+ FGYRRIK
Sbjct: 421 GKVQLINATDLWTPIKNEGNKRRIVGDDQRRQILDIYAAAENDALSKMVDYQVFGYRRIK 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LD+ GL+ LEA  TW+KL   H++FW + +KP + +   Y WAE+F KE+
Sbjct: 481 VLRPLRMTLKLDEQGLSTLEATDTWQKLPVEHKAFWREAIKPQLGETKEYIWAETFTKET 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            K+ +AK LKVK +K+FI A I AFG+ DP A+PV D  G  +PDT+LT+YENVPYL+SI
Sbjct: 541 AKTPDAKLLKVKGNKTFITALIAAFGKNDPDAEPVIDAQGNIVPDTDLTDYENVPYLDSI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           QDYF REV PH PDAYID+ FID++DK++GRVGYEINFNRFFYQYQP RKL DIDAELK 
Sbjct: 601 QDYFAREVLPHAPDAYIDESFIDDRDKQLGRVGYEINFNRFFYQYQPPRKLHDIDAELKE 660

Query: 660 VEAQIATLLEEMATE 674
           VE++IA LL E+ATE
Sbjct: 661 VESEIAALLAEVATE 675


>gi|21243627|ref|NP_643209.1| type I restriction-modification system DNA methylase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21109202|gb|AAM37745.1| type I restriction-modification system DNA methylase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 685

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/674 (58%), Positives = 495/674 (73%), Gaps = 12/674 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            S   LA+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLEC LEPTR  VRE +  F   
Sbjct: 16  ASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDK 75

Query: 66  NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            +D +  ++  AG  FYNTS+YSL+TLG+T T++NLE+Y+A+FSDNA+ IF+ F+F+ TI
Sbjct: 76  GLDTDLILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTI 135

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ARL +A +L+KIC+NF+  +LHPD VPDRVMSNIYEHLIRRFGSEV+E AEDFMTPRDVV
Sbjct: 136 ARLARADILFKICQNFANTDLHPDVVPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVV 195

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HLAT LLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMN+V    +  K PP+L+P G
Sbjct: 196 HLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDGFAAQGKAPPVLIPFG 255

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHYCLSNPPFGK 303
           QELEPETHAV +A ML+RRLE++P RDLS N+    STLS+D + G+RFHYCLSNPPFGK
Sbjct: 256 QELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGK 315

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           KWEKD+  VE+E K  G  GRFG G P++SDGSMLF+ HL +KLE P  GGGRAAI+LS 
Sbjct: 316 KWEKDQAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSG 375

Query: 363 SPLFNGRAGS---GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           SPLF G AG     ES+IRRWLLE D +E IVALP D+FFRT I TY+W+L+N K E+RR
Sbjct: 376 SPLFTGTAGGHGHSESQIRRWLLEKDYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRR 435

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+AT++ + +R  EG KRR ++D Q + I  +Y     G+  R++DYR FGYRRI
Sbjct: 436 GKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGENVRIVDYRDFGYRRI 495

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           KV RPLR+   + + GLA L     + KL    QS WL +L+  + Q YPY W       
Sbjct: 496 KVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTWF-----A 550

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
           ++ +   K    K +K+   A  +A G +D +A  V D +G  + D +L ++E VP  + 
Sbjct: 551 TLPALAKKAGLPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQP 610

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  Y   EV PHV DA++D  F D++D + G+VGYEINFNR+FY+Y P R L +ID+ELK
Sbjct: 611 IDTYMAAEVLPHVSDAWVDASFTDDEDGQRGKVGYEINFNRYFYKYVPPRDLHEIDSELK 670

Query: 659 GVEAQIATLLEEMA 672
            VEA+IA LL+E+A
Sbjct: 671 AVEAEIAALLDEVA 684


>gi|310830281|ref|YP_003965381.1| type I restriction-modification system DNA methylase, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308753187|gb|ADO44330.1| type I restriction-modification system DNA methylase, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 673

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/676 (60%), Positives = 499/676 (73%), Gaps = 6/676 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E      SLA+FIWKNA+DLWG+FKH +FGK+ILPFTLLRRLEC LEPTR  VRE   
Sbjct: 1   MSETQVKNTSLADFIWKNADDLWGNFKHVEFGKIILPFTLLRRLECVLEPTREQVRETVK 60

Query: 61  AFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           +   S IDL+    +  G+ FYNTS YSL++LG+T TR NLE YIA FS+NA+ IFE FD
Sbjct: 61  SLKDSGIDLDVILRQQTGFPFYNTSNYSLASLGATRTRQNLEDYIAQFSENARVIFEQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++TIAR+++AG+LYKIC NFS I+LHPD VP+RVMSN+YEHLIRRFG+EV+E AEDFMT
Sbjct: 121 FANTIARMDRAGVLYKICLNFSAIDLHPDAVPERVMSNVYEHLIRRFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV      + I P+
Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRSLQDRYSIAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +VP+GQELEPETHAVC+AGML++ LESDP RDLSKNI+ GSTLS D   G++FHYC+SNP
Sbjct: 241 IVPYGQELEPETHAVCLAGMLLKTLESDPGRDLSKNIKLGSTLSADKHRGEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWE D DAV +EH + G  GRFGP LP++SDGSMLFL+HL +KLE P  GGGRAAI
Sbjct: 301 PFGKKWEMDADAVTREHLEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLEDPIKGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AG GESEIRR+LLE D++EAI+ALPT++FFRT I TY+WILSN+K + R
Sbjct: 361 VLSGSPLFNGNAGQGESEIRRYLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNKKPKHR 420

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +G VQLINAT L+  +R  EG KRR + +DQ  +I+ +Y      K S +L    FGYRR
Sbjct: 421 KGMVQLINATGLYEPMRKSEGNKRRRVGEDQTAEIVRMYSEFVQTKESLILQATDFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I+VLRPLR   I+ + G+A L  +  W K S   Q+ WL + +  + +   + W ESF K
Sbjct: 481 IRVLRPLRKKMIISEEGIAALADEKAWEKRSAGQQAGWLGLFRENLGRTESWHWIESFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
            + K ++      K     I AF  AF   DP  DPVTD  G  IPD +LT+YENVP   
Sbjct: 541 NAAKCDDDLG---KVDVGLIKAFQKAFAVHDPDMDPVTDKKGNVIPDDDLTDYENVPLTT 597

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I DY   EV PH  DAYID+ + DE D +IG VGYEINFNR FY+YQP RKL+DIDAEL
Sbjct: 598 DIHDYLASEVLPHAEDAYIDETYRDETDGDIGIVGYEINFNRHFYEYQPPRKLEDIDAEL 657

Query: 658 KGVEAQIATLLEEMAT 673
           K VEA+IA +L E+  
Sbjct: 658 KAVEAEIAGMLAEVTA 673


>gi|260427933|ref|ZP_05781912.1| N-6 DNA methylase [Citreicella sp. SE45]
 gi|260422425|gb|EEX15676.1| N-6 DNA methylase [Citreicella sp. SE45]
          Length = 673

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/675 (59%), Positives = 503/675 (74%), Gaps = 6/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +  +LA+FIWKNA+DLWG+FKHTDFGK+ILPFTLLRRLEC LEPTR A  +   
Sbjct: 1   MSQETKNNTTLADFIWKNADDLWGNFKHTDFGKIILPFTLLRRLECVLEPTREATLQAVE 60

Query: 61  AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F GS ID+     +  GY FYNTS Y+L++LG+T TR NLE YI  FSDNA+ IF+ FD
Sbjct: 61  NFKGSGIDMGVLLRQQTGYPFYNTSSYTLASLGATRTRQNLEDYIGQFSDNARVIFDQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+AR+++AG+LYKIC NF+ ++LHP+ VP+R MSN+YEHLIR+FG+EV+E AEDFMT
Sbjct: 121 FINTVARMDRAGVLYKICLNFAAMDLHPEAVPERTMSNVYEHLIRKFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLL+PDD LF++  G+IRTLYDPTCGTGGFL+D M HVA+     K+ P+
Sbjct: 181 PRDVVHLAIELLLEPDDELFRQDEGLIRTLYDPTCGTGGFLSDGMEHVANLRDRFKVAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++P+GQELEPETHAVC+A ML++ +ESDP RDLSKNI+ GSTLS D    ++FHYC+SNP
Sbjct: 241 IIPYGQELEPETHAVCLASMLLKTVESDPGRDLSKNIKLGSTLSDDKHRSEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWE D+ AV +EHK  +  GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI
Sbjct: 301 PFGKKWEMDQAAVTREHKEQQFEGRFGPKLPRVSDGSMLFLLHLLSKLETPENGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AG GESEIRR LLE D++E+I+ALP ++FFRT I+TY+WILSN+K   R
Sbjct: 361 VLSGSPLFNGNAGQGESEIRRHLLEQDVVESIIALPQEIFFRTGISTYIWILSNKKPAHR 420

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINAT L+  +R  EG KRR + ++Q R+I+ +Y   E  K S +LD   FGYRR
Sbjct: 421 KGKVQLINATGLYEPLRKSEGNKRRKVGEEQTREIVRMYSDFEASKESLILDSTEFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           IKVLRPLR   ++ + G+A +  +  W K S   Q+ WLD+ +  M +   + W ESF K
Sbjct: 481 IKVLRPLRKKMVISEDGIAAVADEKAWEKRSAEQQAAWLDLFRENMDREEGWHWMESFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
            S K  +A     K   + I AF  AFG +DP  D V D  G  IPD +LT++ENVP   
Sbjct: 541 NSAKRTDALG---KVDAALIKAFQKAFGVRDPELDEVVDKKGNVIPDDDLTDFENVPLGT 597

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I+DY   EV PH  DAYID+ F DE D  IG VGYEINFNR+FY+YQP R+L+DIDAEL
Sbjct: 598 DIRDYLAAEVLPHAEDAYIDETFRDETDGGIGIVGYEINFNRYFYEYQPPRELEDIDAEL 657

Query: 658 KGVEAQIATLLEEMA 672
           K VEA+IA +L E+ 
Sbjct: 658 KAVEAEIAGMLAEVT 672


>gi|110681176|ref|YP_684183.1| type I restriction-modification system DNA methylase, putative
           [Roseobacter denitrificans OCh 114]
 gi|109457292|gb|ABG33497.1| type I restriction-modification system DNA methylase, putative
           [Roseobacter denitrificans OCh 114]
          Length = 677

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/680 (58%), Positives = 494/680 (72%), Gaps = 10/680 (1%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++      SLA+FIWKNA+DLWGDF+HT+FGK+ILPFTLLRRLEC L PTR  VRE   
Sbjct: 1   MSDAQTKNTSLADFIWKNADDLWGDFRHTEFGKIILPFTLLRRLECVLAPTREEVRETVK 60

Query: 61  AFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             G S ID++    +  G+ FYNTS Y L +LG+T TR NLE YI+ FSDNA+ IFE FD
Sbjct: 61  NLGDSGIDMDVILRQQTGFPFYNTSNYDLRSLGATRTRANLEDYISQFSDNARVIFEQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++TIAR+++AG+LYKIC+NF+ I+LHPDTVP+R MSN+YEHLIRRFG+EV+E AEDFMT
Sbjct: 121 FANTIARMDRAGVLYKICQNFAAIDLHPDTVPERTMSNVYEHLIRRFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV +    + I P+
Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRNLQDRYSIAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++P+GQELEPETHAVC+AGML++ LE+DP RDLSKNI  GSTLS D    ++FHYC+SNP
Sbjct: 241 IIPYGQELEPETHAVCLAGMLLKTLETDPGRDLSKNIALGSTLSADKHRPEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWEKD+  V +EHK  G  GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI
Sbjct: 301 PFGKKWEKDQADVTREHKEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLESPENGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +LS SPLFNG AG GESEIRR LLE D++EAI+ALPT++FFRT I TY+WILSN K   R
Sbjct: 361 ILSGSPLFNGNAGQGESEIRRHLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNDKPAHR 420

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINAT+++  +R  EG KRR + + Q R I+ +Y   E  K S +L    FGYRR
Sbjct: 421 KGKVQLINATEMYEPMRKSEGNKRRRVGEQQTRDIVQMYADFEATKQSLILSAPDFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           IKVLRPLR   ++   GLA L  +  W K +   ++ W  +    M     + W E+F K
Sbjct: 481 IKVLRPLRKKIVISAEGLATLADEKAWEKRTEAQRAGWTALFNDHMGAEEGWHWIEAFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY-- 595
            ++K +       KA  + I AF  A G  DP  DPVTD  G+ IPD +LT++ENVP   
Sbjct: 541 NAVKRDADLG---KADVALIKAFRKALGVHDPELDPVTDKKGQIIPDDDLTDFENVPLAA 597

Query: 596 --LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
                I  Y   EV+PH  DAYID+ + DE D +IG  GYEINFNR+FY+Y P R L +I
Sbjct: 598 DGTADIHGYLAAEVTPHAHDAYIDETYRDESDGQIGIKGYEINFNRYFYEYLPPRDLDEI 657

Query: 654 DAELKGVEAQIATLLEEMAT 673
           DAELK VEA+IA +L E+A 
Sbjct: 658 DAELKAVEAEIAAVLAEVAG 677


>gi|121997946|ref|YP_001002733.1| N-6 DNA methylase [Halorhodospira halophila SL1]
 gi|121589351|gb|ABM61931.1| N-6 DNA methylase [Halorhodospira halophila SL1]
          Length = 659

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/674 (43%), Positives = 419/674 (62%), Gaps = 20/674 (2%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + + +A FIW  A+ L GD K + +G+VILPFTLLRRLEC LEPT+  V        
Sbjct: 2   NTENHSQMAGFIWSVADLLRGDLKQSQYGRVILPFTLLRRLECVLEPTKEQVLAAAKEHA 61

Query: 64  GS--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +      + A   F+NTS  +L TL  T T ++L SY+ SFS +A+ +FE F+F 
Sbjct: 62  DKPLGVRERLLRRAADQPFFNTSPLTLGTLSDTQTADDLMSYVQSFSPDAREVFEHFNFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L    LLY++ + F+ ++L P  + +  M +I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSANNLLYQVVQRFAAMDLSPGRISNFGMGSIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           DVVHL T+L+L   D   K  P  + T+YDP  GTGGFL+++  ++     +      + 
Sbjct: 182 DVVHLTTSLVLTDQDD--KLQPHSVVTVYDPAAGTGGFLSESDAYIQQVSDN----VTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  + +       NI+ G+TLS D   G+RF + L+NPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQQVE-------NIKLGNTLSDDELAGERFDFMLANPPF 288

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I+L
Sbjct: 289 GVEWKKVQKQVTDEHKRWGYNGRFGPGLPRVSDGSLLFLLHLVSKVRDPREGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LLE DL+EAIVALPTD+F+ T IATY+WILSN K  ERRG
Sbjct: 349 NGSPLFTGGAGSGESEIRRFLLERDLVEAIVALPTDMFYNTGIATYVWILSNDKPPERRG 408

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLINAT+ ++ +R   G KR+ I+D     I+ +Y + E  + S++     FGYRRI 
Sbjct: 409 RVQLINATERYSKMRKSLGSKRQYIDDTNIDNIVRLYGAFEESEESKLFPVAEFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F   +  + R+  +   +KL    Q+  L   + M  Q+  Y   ++F ++ 
Sbjct: 469 VERPLRLNFQASEERIRRILDEKPIQKLDEDTQARLLAACEAMDGQML-YRDRQAFTRDL 527

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            ++ E +  +VK     + A +NA   +DP A P TD  G   PDT+L ++ENVP  ES+
Sbjct: 528 KRALEER--EVKLGAPPMKAVLNALSERDPEAKPCTDAKGNPEPDTSLRDHENVPLTESV 585

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA+ID+   D +D E+G VGYEI FNR FY++ P R L++IDA+LK 
Sbjct: 586 YDYFEREVRPHVPDAWIDEAKRDAQDGEVGIVGYEIPFNRHFYKFTPPRPLEEIDADLKV 645

Query: 660 VEAQIATLLEEMAT 673
              +I  ++EE++ 
Sbjct: 646 CTDRIKRMIEELSA 659


>gi|120553176|ref|YP_957527.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120323025|gb|ABM17340.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 661

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/677 (43%), Positives = 410/677 (60%), Gaps = 20/677 (2%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EK 58
           MT+   + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT++ V    +
Sbjct: 1   MTDDQTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +  +  ++ AG  F+N S  SL+TL  + T ++L SY+ SFS +A+ IFE F
Sbjct: 61  EHQAKPDAVREKLLLRAAGQQFFNASPLSLATLSDSQTADDLMSYVQSFSQDAREIFEHF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F   + +L    LLY++ + F+ I+L P T+ +  M  I+E LIR+F    +E A +  
Sbjct: 121 HFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKFAESSNETAGEHF 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+VHL T+L+L   +      P  I T+YDPT GTGGFL++   ++           
Sbjct: 181 TPRDIVHLTTSLVLTGQEGRLT--PNSIVTIYDPTAGTGGFLSEGDEYIQQISE----SV 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  HGQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F   LSN
Sbjct: 235 TVSLHGQELNPESYAICKADMLIKGQEVS-------NIKLGNTLSDDQLATNKFDLMLSN 287

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  
Sbjct: 288 PPFGVEWKKVQKQVTDEHKHRGFDGRFGPGLPRVSDGSLLFLMHLVSKMRDAREGGSRIG 347

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+TY+W+LSN K  E
Sbjct: 348 IILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGISTYVWVLSNNKPAE 407

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRGKVQLI+ATD  T +R   G KR+ +++  + +I+ +Y   +  K S++     FGYR
Sbjct: 408 RRGKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKKSKIFPIEAFGYR 467

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPL+++F   +  +AR+  +    K+    Q       + M  +   Y   + F 
Sbjct: 468 RITVERPLQLNFQTSEERIARIADEKAILKMDQEDQGNIHAACRAMNAKTV-YRNRKQFQ 526

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           K    S      +V      + + +NA   +DP AD  TD  G    DT L +YENVP  
Sbjct: 527 KALKASLTD--HQVYLGAPQLKSLLNALSERDPEADICTDSKGNPEADTGLRDYENVPLS 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYFVREV PHVPDA+ID+   DEKD E+G VG+EI FNR FY++ P R L++IDA+
Sbjct: 585 ESVYDYFVREVKPHVPDAWIDESKRDEKDGEVGIVGFEIPFNRHFYEFTPPRPLEEIDAD 644

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 645 LKQCTDRIKQMIEELSA 661


>gi|120553352|ref|YP_957703.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120323201|gb|ABM17516.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 661

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 291/677 (42%), Positives = 406/677 (59%), Gaps = 20/677 (2%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EK 58
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT++ V    +
Sbjct: 1   MTHDKTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +  +  ++ A   F+N S  SL+TL  + T ++L SY+ SFS +A+ IFE F
Sbjct: 61  EHQTKPDAVREKLLLRAADQQFFNASPLSLATLSDSQTADDLMSYVQSFSQDAREIFEHF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F   + +L    LLY++ + F+ I+L P T+ +  M  I+E LIR+F    +E A +  
Sbjct: 121 HFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKFAESSNETAGEHF 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+VHL T+L+L   +      P  I T+YDPT GTGGFL++   ++           
Sbjct: 181 TPRDIVHLTTSLVLTGQENRLT--PNSIVTIYDPTAGTGGFLSEGDEYIQQISE----SV 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  HGQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F   LSN
Sbjct: 235 TVSLHGQELNPESYAICKADMLIKGQEVS-------NIKLGNTLSDDQLATNKFDLMLSN 287

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  
Sbjct: 288 PPFGVEWKKVQKQVTDEHKHRGFAGRFGPGLPRVSDGSLLFLMHLVSKMRDAREGGSRIG 347

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+TY+W+LSN K  E
Sbjct: 348 IILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGISTYVWVLSNNKPAE 407

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ KVQLI+ATD  T +R   G KR+ +++  + +I+ +Y   +  K S++     FGYR
Sbjct: 408 RKSKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKKSKIFPIEAFGYR 467

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPL+++F   +  L R+  +   +K+    Q   L   + M  +   Y   + F 
Sbjct: 468 RITVERPLKLNFQTSEERLQRIADEKAIQKMDQEDQDKILAACRAMDAEKV-YRNRKQFQ 526

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           K           +V  S   + A +NA   +DP AD  TD  G    DT L +YENVP  
Sbjct: 527 KAL--KTSLTDHQVYLSAPQLKALLNALSERDPEADICTDSKGNPEADTGLRDYENVPLS 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYF REV PHVPD +ID+   DEKD E+G VG+EI FNR FY++ P R L++IDA+
Sbjct: 585 ESVYDYFEREVKPHVPDVWIDESKRDEKDGEVGIVGFEIPFNRHFYEFTPPRPLEEIDAD 644

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 645 LKQCTDRIKQMIEELSA 661


>gi|146280648|ref|YP_001170801.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145568853|gb|ABP77959.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 639

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 304/670 (45%), Positives = 422/670 (62%), Gaps = 35/670 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +LA FIW  A+ L G FK +++G++ILPFT+LRRLEC LEPTR  VR ++ +   S 
Sbjct: 2   NQQTLAPFIWNIADLLLGAFKPSEYGRIILPFTVLRRLECVLEPTRDKVRSQFESMKASG 61

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +D++  +   AG +FYN S++SL ++GST+TR NLE YIA FS NA+ +FE F F + +A
Sbjct: 62  VDMDLILPTTAGATFYNVSQFSLGSVGSTSTRANLEDYIAKFSANARQVFEHFAFDTWLA 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +LE   LLY + + F+ ++LHPD + +  M  ++EHLIR+F    ++ A  + TPRDVV 
Sbjct: 122 KLENRNLLYLVTQKFAAVDLHPDKISNHEMGLVFEHLIRKFAESSNDDAGQYFTPRDVVR 181

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+  PD        G++RT+YD   GTGGFL+ A+  V +   + +    LVP+ Q
Sbjct: 182 LATTLVFAPDHQALN-GEGVVRTVYDCAAGTGGFLSSAIEQVYEWNPNAR----LVPYAQ 236

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PET+A+ VA  LI+  +       ++NI+ G+TLS D    ++F YCL+NPPFG KW
Sbjct: 237 ELNPETYAISVADKLIQGYD-------TRNIKLGNTLSDDHLPHEQFDYCLANPPFGVKW 289

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           E  +  V+ EH + G  GRFG GLP++ DGS+LFLMHL +K +    GG R  IVLS SP
Sbjct: 290 ENVQKQVQAEHSQQGFAGRFGAGLPRVGDGSLLFLMHLLSKRKPVELGGSRIGIVLSGSP 349

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+LSN K   R+GKVQL
Sbjct: 350 LFNGGAGSGESEIRRWILENDWLEAIIALPTDLFYNTGIGTYIWVLSNHKDALRKGKVQL 409

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+A+ +   +R   G KR+ ++D+Q  +I  ++ + E G  S++     FGYRRI V RP
Sbjct: 410 IDASAMHAPMRKSLGSKRKYLSDEQIAEIAKLHEAFEEGPNSKIFATTDFGYRRITVERP 469

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR+ F +    L        ++ +    Q+     ++        Y    +F+K +    
Sbjct: 470 LRLRFSITPERL------KIYQDIKGADQAEAFATVR------GEYDNLSAFLKAAGIK- 516

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
                  K  K  + A ++ FG +D  A PV D  G    D++L E+ENVP  ++I DYF
Sbjct: 517 -------KLGKGALKAALSCFGERDANAQPVLDDKGNQQADSDLREFENVPLNQNIDDYF 569

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV PHVPDA+ID    D KD ++G VGYEINFNR+FY YQP R L +IDA+LK VEA+
Sbjct: 570 AREVLPHVPDAWIDTGKTDAKDGQVGIVGYEINFNRYFYVYQPPRPLAEIDADLKAVEAE 629

Query: 664 IATLLEEMAT 673
           IA LL E+  
Sbjct: 630 IAALLGEVTA 639


>gi|170683208|ref|YP_001746680.1| type I restriction-modification system DNA methylase [Escherichia
           coli SMS-3-5]
 gi|170520926|gb|ACB19104.1| type I restriction-modification system DNA methylase [Escherichia
           coli SMS-3-5]
 gi|330908617|gb|EGH37136.1| type 1 restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli AA86]
          Length = 659

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 345/673 (51%), Positives = 453/673 (67%), Gaps = 20/673 (2%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA 
Sbjct: 4   QDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAE 63

Query: 63  GGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             S IDL     ++AG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F F 
Sbjct: 64  KQSGIDLGLVLPEIAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEFKFG 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPR
Sbjct: 124 QTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    V
Sbjct: 184 DAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----V 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           P GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPF
Sbjct: 239 PFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G KWEK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVL
Sbjct: 292 GIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVL 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   R+ 
Sbjct: 352 SGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPRRKN 411

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR++ 
Sbjct: 412 QVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYRKVT 471

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + +
Sbjct: 472 IQRPLRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA----RLA 526

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   +
Sbjct: 527 VKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFDRDV 586

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           +DYF +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID ELK 
Sbjct: 587 EDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRELKA 646

Query: 660 VEAQIATLLEEMA 672
            EA+I  LL E+A
Sbjct: 647 CEARIQALLNEVA 659


>gi|332975486|gb|EGK12376.1| N-6 DNA methylase [Desmospora sp. 8437]
          Length = 684

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 279/693 (40%), Positives = 393/693 (56%), Gaps = 40/693 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + +   NFIW  AE L GD+K +++GKV+LPFT+LRRL+C L PT++ V  K  
Sbjct: 10  MSDQLTNFSEKTNFIWSIAEILRGDYKQSEYGKVVLPFTVLRRLDCVLSPTKAQVLAKME 69

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAI 114
              G  +D E        V    F NTS +   TL +   N   NL++YI  FS  A+ I
Sbjct: 70  EIQGMGLDPEQAEPVLTSVTDERFCNTSPFDFQTLKAEPDNLAENLKAYIRGFSREARDI 129

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + F+F   I RLE+A LLY + + F+ I+LHPD V +  M  I+E LIRRF  + +E A
Sbjct: 130 IDYFNFHVQIDRLEEADLLYLVVERFAAIDLHPDRVSNLEMGYIFEELIRRFSEQSNETA 189

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   LL + D+       G+IRTLYDP CGTGG L+ A  ++ +     
Sbjct: 190 GEHFTPREVIRLMVNLLFNEDEEGELNRKGIIRTLYDPACGTGGMLSVAEEYLKELNDQA 249

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +    L   GQEL  E++A+C A ML++  +          I+ G++ + D    ++F Y
Sbjct: 250 Q----LKVFGQELNAESYAICKADMLLKGQDPS-------RIKFGNSFTHDGLAHEKFDY 298

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K + A+E EHK  G  GRFG GLP++SDGS+LFL H+ +K++ P  GG
Sbjct: 299 MLSNPPFGVEWKKVQRAIEDEHKQQGYAGRFGAGLPRVSDGSLLFLQHMISKMKSPEEGG 358

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R AIV + SPLF G A SGES IRRW++END +EAIVALP  LF+ T I+TY+WI++NR
Sbjct: 359 SRLAIVFNGSPLFTGGAESGESNIRRWIIENDWLEAIVALPDQLFYNTGISTYVWIVTNR 418

Query: 414 KTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K   R+GK+QLIN    + ++R   G KR  +  D   +I  I+     GK+S++ D   
Sbjct: 419 KRPARKGKIQLINGVKFFQTMRKSLGNKRHELGQDHIDEISRIHGEFREGKYSKIFDNAD 478

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-------------QSFWLDIL 519
           FGYRRI V RPLR+   + + G+ RL     ++ L+                ++    IL
Sbjct: 479 FGYRRITVERPLRLRIQVTEKGIQRLTEQTPFQNLAKSRKKGAAGEKEIADGKAQQEAIL 538

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           K +   +    + +            K   VK + S   A + A G +D  A    D  G
Sbjct: 539 KTLGGMVTEKVYTDRDAFLKELKGVFKEQGVKLTASIQKAILAACGERDETAQVCKDSKG 598

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
              PD  L +YENVP  E I DY  REV PHVPDA+ID+        E  +VGYEI F R
Sbjct: 599 NVEPDPELRDYENVPLKEEIHDYMEREVKPHVPDAWIDE--------EKTKVGYEIPFTR 650

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            FY+Y+P R L++IDAE++ +E +I  +L E+A
Sbjct: 651 HFYEYKPLRPLEEIDAEIQALEKEILGMLGEIA 683


>gi|229520169|ref|ZP_04409596.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
 gi|229342763|gb|EEO07754.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
          Length = 660

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 347/673 (51%), Positives = 452/673 (67%), Gaps = 20/673 (2%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA 
Sbjct: 4   QDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAE 63

Query: 63  GGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             S IDL     +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F F 
Sbjct: 64  KQSGIDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEFKFG 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI  LEKA LLY++   F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPR
Sbjct: 124 QTIEDLEKAKLLYRMVSYFANLDLHPDVVSDRVLSDAYEELIFKFASSVNEKAGEFMTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    V
Sbjct: 184 DAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----V 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           P GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPF
Sbjct: 239 PFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G KWEK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVL
Sbjct: 292 GIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVL 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S SPL NG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K   R+ 
Sbjct: 352 SGSPLLNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEPRRKN 411

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR++ 
Sbjct: 412 QVQLINLADIWTPMRKSQGSKRKYLSDEQIDDIVRAYDGFETSDNCKLFSTTDFAYRKVT 471

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + +
Sbjct: 472 IQRPLRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA----RLA 526

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +K N  K    K SK+   A    F   DP+ +P  D  G+ I D  L + E++P+   +
Sbjct: 527 VKKNNNKGDFGKCSKALATALTAHFLIVDPQFEPALDEKGQVIADPKLKDTESIPFDRDV 586

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           +DYFV+EV PHVPDA+ID    DEKD E+G +GYEINFNR+FYQY P R+L  IDAELK 
Sbjct: 587 EDYFVQEVLPHVPDAFIDHSVRDEKDGEVGIIGYEINFNRYFYQYVPPRELTVIDAELKA 646

Query: 660 VEAQIATLLEEMA 672
            EA+I  LL E+A
Sbjct: 647 CEARIQALLNEVA 659


>gi|220933788|ref|YP_002512687.1| type I restriction-modification system, M subunit; N-6
           adenine-specific DNA methylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995098|gb|ACL71700.1| type I restriction-modification system, M subunit; N-6
           adenine-specific DNA methylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 655

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 297/673 (44%), Positives = 407/673 (60%), Gaps = 25/673 (3%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + ++ A+F+W  A+ L GDFK + +G++ILPFTLLRRLEC L PT+ AV  +Y     S
Sbjct: 3   ENFSTTASFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLAPTKQAVLAEYDKRKDS 62

Query: 66  NIDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ +  F++ A  G  FYNTS   L++LG T   +NL++YI SFS  A+ IFE F F   
Sbjct: 63  DLPMGPFLEKASGGLKFYNTSPMDLASLGETQVLDNLDTYIRSFSPAAREIFEHFGFHGF 122

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +L++A LLY++ + F+  +L P    +  M  I+E LIRRF    +E A +  TPRD+
Sbjct: 123 LEKLDEANLLYQVIQRFASTDLSPQAHSNYEMGLIFEELIRRFAESSNETAGEHFTPRDI 182

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           VHL TALL    D   K +PG I T+YDPT GTGGFL++   ++       ++       
Sbjct: 183 VHLTTALLFT--DQQEKIAPGKIVTVYDPTAGTGGFLSEGEEYIHSISQDARV----RVF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE+HA+C+A MLI+  E D       NI+ G+TLS D    ++F + LSNPPFG 
Sbjct: 237 GQELNPESHAICMADMLIKGHEID-------NIKLGNTLSDDQLPAQQFDFMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W+K +  V+ EHK  G  GRFGPGLP++SDGS+LFLMHL +K+      G R  I+L+ 
Sbjct: 290 DWKKVQKQVQDEHKLKGHAGRFGPGLPRVSDGSLLFLMHLMSKMRDAKEQGSRIGIILNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR +LENDL+EAIVALPTD+F+ T IATY+W+LSN K  ER+G+V
Sbjct: 350 SPLFTGGAGSGESEIRRHILENDLLEAIVALPTDMFYNTGIATYVWVLSNHKRPERKGRV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLINATD+   +R   G KR+ + +D    I+ +Y + E  + S++ +   FGYRRI V 
Sbjct: 410 QLINATDMGDKMRKSLGSKRKYLTEDSIETIVRLYGAFEETETSKIFNTTDFGYRRITVE 469

Query: 482 RPLRMSFIL-DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           RPL+++F   D+T LA L+AD  W KL    +   LD L    +                
Sbjct: 470 RPLQLAFHPKDETRLAALQADKGWEKLDKALRQAILDALPRFEEDKILSRSTFK------ 523

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           K  +                    G  D +A+      G+  P+ +L + ENVP  E I 
Sbjct: 524 KWLKVHMNGATLPAPAFKLLQKHLGEHDDQAEVC-KTKGQPEPNPDLRDNENVPLGEDIH 582

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF REV+PHVPDA+ID+   DE+D ++G VGYEI FNR FYQY P R L++IDA+L  V
Sbjct: 583 AYFAREVTPHVPDAWIDESKKDEQDGQVGIVGYEIPFNRHFYQYVPPRPLEEIDADLDQV 642

Query: 661 EAQIATLLEEMAT 673
             +I  LL+E+  
Sbjct: 643 SREIMALLQEVHA 655


>gi|169634729|ref|YP_001708465.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter baumannii SDF]
 gi|169153521|emb|CAP02683.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter baumannii]
          Length = 671

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 367/670 (54%), Positives = 471/670 (70%), Gaps = 11/670 (1%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             + ++LA+FIW NA DLWGDF HT+FGK+ILPFT+LRRLEC LEPT+ AV   Y  F  
Sbjct: 10  NNTESTLASFIWNNANDLWGDFPHTEFGKIILPFTVLRRLECVLEPTKDAVLNTYEQFKD 69

Query: 65  SNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             + L+  +  V+G  FYN S Y+LS LG T T+ N E YIA+ S+N + IFE FDF++T
Sbjct: 70  QGMALDDILTNVSGNPFYNKSTYNLSNLGGTKTKANFEDYIANSSENVRVIFEQFDFNTT 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I +L KA LL +IC NF+ I+LHP+ VPDR MSN+YEHLI +FG+EV  G+EDFMTPRD+
Sbjct: 130 INKLAKANLLLRICNNFAAIDLHPNVVPDRTMSNVYEHLIAKFGAEVGTGSEDFMTPRDI 189

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           VHLA  LLL+PD+ LF++  G+IRT+YD TCGT GFLTD MN+V      +K+ P+LVPH
Sbjct: 190 VHLAATLLLEPDNELFEQKNGLIRTIYDQTCGTSGFLTDMMNYVDGFKDRYKVAPVLVPH 249

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL+PETHAV +  ML+++LESDP RDLS+NI+ GSTLS DLF G+RFHY  SNPPFG 
Sbjct: 250 GQELQPETHAVALGSMLLKKLESDPSRDLSQNIKLGSTLSNDLFAGQRFHYQCSNPPFGM 309

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W KD +AV+ EHK  G  GRFG GLPK SDGSMLFL +L +KLELP NGGGR AIVLS 
Sbjct: 310 SWAKDANAVQLEHKEKGLNGRFGAGLPKASDGSMLFLQNLISKLELPENGGGRGAIVLSG 369

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLFNG AGSGESEIRR++LEND +EAIVALPTD+FFRT I TY+W++SNRK E+R+GKV
Sbjct: 370 SPLFNGGAGSGESEIRRFILENDYLEAIVALPTDIFFRTGIGTYIWLISNRKPEQRKGKV 429

Query: 423 QLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT + +S+R NEG KR+ I+ +   +I  IY   E    S++ DY  FGYRR+KVL
Sbjct: 430 QLIDATGMGSSMRKNEGNKRKFIDQNSIDEISRIYADFEESSVSKIFDYTDFGYRRVKVL 489

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPLR+    D   L   +A   + KLS   Q+     ++        Y W E+   +++ 
Sbjct: 490 RPLRIDLQFDAEKLESFKASKEFGKLSDSDQNTVSAYIEQQFGDSKDYAWFENTFLKNLP 549

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
            +       K SK    A I AFG ++P A+ V ++NGE   D+ LT+YEN+P  + I  
Sbjct: 550 LS-------KVSKGLKNALIAAFGVQNPDAEAV-EINGEVQMDSELTDYENIPLNQDIAA 601

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  +EV PH PDA ID  + D KD ++G VGYEINFNR+FY ++  R   +I AE+K + 
Sbjct: 602 YMAKEVLPHAPDAVIDTSYTDSKDGQVGVVGYEINFNRYFYVFEQPRHPNEIMAEIKALS 661

Query: 662 AQIATLLEEM 671
           A++A LL E+
Sbjct: 662 AEVAQLLGEI 671


>gi|261212600|ref|ZP_05926884.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|260837665|gb|EEX64342.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
          Length = 679

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 305/699 (43%), Positives = 412/699 (58%), Gaps = 50/699 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +S+A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+  V  KY 
Sbjct: 1   MTN--NNFSSVAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPEVLAKYE 58

Query: 61  AFGGSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 I+ +       A  SFYNTS+  L+ LG T   +NLESYI SFS NA+ IFE F
Sbjct: 59  TVKAMPIEAQDKLLTHAAKLSFYNTSKMDLNRLGETGVASNLESYIQSFSPNAREIFEHF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF +TI +LE+A LLYK+ K F+  +LHPDT+ +  M  ++E LIRRF    +E A +  
Sbjct: 119 DFFNTIDKLEEADLLYKVAKRFASTDLHPDTISNYGMGLVFEELIRRFAESSNETAGEHF 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+V L T+LL   +D L      ++R++YDPT GTGGFL+  M +V           
Sbjct: 179 TPRDIVELTTSLLFTNEDELTSSG--LVRSIYDPTAGTGGFLSSGMEYVHKLNE----KA 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQEL PE++A+C A MLI+  + D       NI+ G+TLS D     +F Y LSN
Sbjct: 233 SLSAFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRNDKFDYMLSN 285

Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  +  EH + G  GRFG GLP++SDGS+LFL+HL +K+     GG R  
Sbjct: 286 PPFGVDWKKIQKQINDEHTQKGFEGRFGAGLPRVSDGSLLFLLHLISKMRPVSEGGSRIG 345

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LENDL+EAIVALPTD+F+ T IATY+W+LS+ K   
Sbjct: 346 IILNGSPLFTGGAGSGESEIRRYILENDLLEAIVALPTDMFYNTGIATYIWVLSSHKPAH 405

Query: 418 RRGKVQLINATDLWTSI------------------------RNEGKKRRIINDDQRRQIL 453
           R+GKVQLINA+                              ++ G KR+ +  D   +I+
Sbjct: 406 RKGKVQLINASKERAKTGGRGRSGGSEVEGDDENVFYAAMRKSLGSKRKELTPDAIDKIV 465

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL-DKTGLARLEADITWRKLSPLHQ 512
             Y       FS++ DY+ FGYRRI V RPL+++    D+  L  L+AD  W K+    Q
Sbjct: 466 QTYGQFAENDFSKIFDYKEFGYRRITVERPLQLAIYPKDELRLEALQADTAWEKMDETTQ 525

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              LD L    Q+   Y   + F    +K  + K  +VK S   +   +   G  D  A+
Sbjct: 526 QAILDALASFEQE--KYLSRDKF----LKQLKTKLAEVKLSAVQLKLIVKHLGEHDDEAE 579

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
                 G+   + +L + ENVP  E++ DYF REV PHVP+A+ID+   D KD E+G VG
Sbjct: 580 VC-KAKGQIEANPDLRDNENVPLTETVADYFAREVLPHVPNAWIDESKTDPKDGEVGIVG 638

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           YEI FNR FY Y+P R L++IDA+L  V A+I  LL+E+
Sbjct: 639 YEIPFNRHFYVYEPPRALEEIDADLDAVSAEIMQLLQEV 677


>gi|327479500|gb|AEA82810.1| N-6 DNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 660

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 290/676 (42%), Positives = 409/676 (60%), Gaps = 23/676 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAF 62
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT+ AV RE Y   
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKEAVIRESYAQE 61

Query: 63  GGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           G  ++  E  + + AG  F+N S+ +L TL  T T  +L SY+ SFS +A+ IFE F F 
Sbjct: 62  GRPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQSISQ----QVTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299
            HGQEL PE++A+C A MLI+  + +       NI+ G+TLS D  TG    F + LSNP
Sbjct: 236 LHGQELNPESYAICKADMLIKGQKVE-------NIKLGNTLSDDQLTGAEHHFDFMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I
Sbjct: 289 PFGVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K  ER
Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAER 408

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLI+ +  +  +R   G KR+ I D+Q  +++ +Y   E    S++     FGYRR
Sbjct: 409 QGKVQLIDGSQHFGKMRKSLGSKRQYITDEQIDELVRLYGRFEETAQSKIFPVEAFGYRR 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I V RPLR++F      + ++  +    KL    +   ++ L+ M   +  +   E F K
Sbjct: 469 ITVERPLRLNFQTSAERIEKVLEEKAIEKLEAPARQRLIEALQAMDANVL-HRNREQFSK 527

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
              K+  A    V  S   + A +NA   +DP AD    V G+   D  L + ENVP  E
Sbjct: 528 LLKKTLSA--HDVSPSTPELKAILNALSERDPEADICL-VKGKPEADAGLRDNENVPLGE 584

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           S+ DYF REV PHVPDA+ID+   D +D E+G VG+EI FNR FY +QP R L DID +L
Sbjct: 585 SVYDYFEREVKPHVPDAWIDESKTDAQDGEVGVVGFEIPFNRHFYVFQPPRPLADIDRDL 644

Query: 658 KGVEAQIATLLEEMAT 673
           K    +I  ++E ++ 
Sbjct: 645 KACTDRIKQMIEGLSA 660


>gi|152988798|ref|YP_001345471.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7]
 gi|150963956|gb|ABR85981.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7]
          Length = 658

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/674 (41%), Positives = 406/674 (60%), Gaps = 21/674 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAF 62
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPTR AV RE Y   
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTREAVIRESYAQE 61

Query: 63  GGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           G  ++  E  + + AG  F+N S+ +L TL  T T  +L SY+ SFS +A+ IFE F F 
Sbjct: 62  GRPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQSISQ----QVTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  +         +I+ G+TLS D     RF + LSNPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQD-------VTSIKLGNTLSDDQLADSRFDFMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I+L
Sbjct: 289 GVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K   R+G
Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAARQG 408

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLI+ +  +  +R   G KR+ + ++Q   ++ +Y   E    S++     FGYRRI 
Sbjct: 409 KVQLIDGSQHFAKMRKSLGSKRQYLTEEQIDALVRLYGRFEETAQSKIFPVEAFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F +    + ++  +    KL    +   ++ L+ M   +  +   E F K  
Sbjct: 469 VERPLRLNFQVSSQRIEKVLEEKAIEKLEAPARQRLIEALQAMDASVV-HRNREQFSKLL 527

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            K+  A    V  S   + A ++    +D  AD    V G+   D  L + ENVP  ES+
Sbjct: 528 KKTLSA--HDVSPSTPELKAILSGLSERDSEADICM-VKGQPEADAGLRDNENVPLGESV 584

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHV DA+ID+   DE+D E+G VG+EI FNR FY +QP R L++ID +LKG
Sbjct: 585 YDYFEREVKPHVADAWIDESKRDEQDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRDLKG 644

Query: 660 VEAQIATLLEEMAT 673
              +I  ++E ++ 
Sbjct: 645 CTDRIKQMIEGLSA 658


>gi|146281042|ref|YP_001171195.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas stutzeri A1501]
 gi|145569247|gb|ABP78353.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas stutzeri A1501]
          Length = 658

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 288/674 (42%), Positives = 409/674 (60%), Gaps = 21/674 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAF 62
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC L PT+  V ++ +   
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLAPTKEEVVKQTFAQE 61

Query: 63  GGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           G  +   E F+ + AG  F+N S  +L TL  T T  +L SY+ +FS +A+ IFE F F 
Sbjct: 62  GRPDTVREMFLLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQAFSKDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLASANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVITGQDG--KLQPNSIVTIYDPTAGTGGFLSEGDEYIQSISD----KVSVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  +         +I+ G+TLS D   G+RF + LSNPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQD-------VASIKLGNTLSDDQLAGQRFDFMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  +  EH   G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L
Sbjct: 289 GVEWKKVQKQITDEHSHKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL+NDL+EAIVALPTD+F+ T IATY+WILSN K   R+G
Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQNDLVEAIVALPTDMFYNTGIATYVWILSNHKVAARKG 408

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLI+ +  ++ +R   G KR+ I +DQ  +++ +Y S E    S++    TFGYRRI 
Sbjct: 409 KVQLIDGSQHYSKMRKSLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIETFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F +    + ++  +    KL     S     LK M   +  +   E F K  
Sbjct: 469 VERPLRLNFQICDERIGKVIEEKLILKLGNDAWSLIQAALKSMDSSVL-HRNREQFSKLL 527

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            K+  A ++ +  S   + A +NA   +DP AD  T   G+   D+ L + ENVP  ES+
Sbjct: 528 KKALTAHSVGL--SAPELKALLNALSERDPEADICT-TKGQPEADSGLRDNENVPLGESV 584

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA+ID    D +D E+G VG+EI FNR FY +QP R L DID +LK 
Sbjct: 585 FDYFEREVKPHVPDAWIDTSKTDGQDGEVGVVGFEIPFNRHFYVFQPPRSLADIDRDLKA 644

Query: 660 VEAQIATLLEEMAT 673
              +I  ++E ++ 
Sbjct: 645 CTDRIKQMIEGLSA 658


>gi|323160945|gb|EFZ46869.1| N-6 DNA Methylase family protein [Escherichia coli E128010]
          Length = 659

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 343/673 (50%), Positives = 451/673 (67%), Gaps = 20/673 (2%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA 
Sbjct: 4   QDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAE 63

Query: 63  GGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             S IDL     ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F F 
Sbjct: 64  KQSGIDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEFKFG 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPR
Sbjct: 124 QTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    V
Sbjct: 184 DAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----V 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           P GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPF
Sbjct: 239 PFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G KWEK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVL
Sbjct: 292 GIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVL 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   R+ 
Sbjct: 352 SGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPRRKN 411

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR++ 
Sbjct: 412 QVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYRKVT 471

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + +
Sbjct: 472 IQRPLRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA----RLA 526

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   +
Sbjct: 527 VKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFDRDV 586

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           +DYF +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID ELK 
Sbjct: 587 EDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRELKA 646

Query: 660 VEAQIATLLEEMA 672
            EA+I  L  E+A
Sbjct: 647 CEARIQALPNEVA 659


>gi|297581972|ref|ZP_06943892.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
 gi|297533839|gb|EFH72680.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
          Length = 660

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 345/673 (51%), Positives = 452/673 (67%), Gaps = 20/673 (2%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA 
Sbjct: 4   QDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAE 63

Query: 63  GGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             S IDL     +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F F 
Sbjct: 64  KQSGIDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEFKFG 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPR
Sbjct: 124 QTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    V
Sbjct: 184 DAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----V 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           P GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPF
Sbjct: 239 PFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G KWEK K  VE+EH+  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVL
Sbjct: 292 GIKWEKAKKEVEREHQQLKYAGRFGPGLPSISDGSMLFLLHLVSKMEKPENGGGRVGIVL 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K   R+ 
Sbjct: 352 SGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEVRRKN 411

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
            VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F +R++ 
Sbjct: 412 LVQLINLVDIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFETSDNCKIFLTTDFAFRKVT 471

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + +
Sbjct: 472 IQRPLRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVHHLTDNLG-LQPYEWA----RLA 526

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   +
Sbjct: 527 VKKNNNKGNFGKCSKALATALTAHFLKVDPQFEPALDEKGQVIADPKLKDTESIPFDRDV 586

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           +DYF +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID ELK 
Sbjct: 587 EDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYAPPRELSVIDGELKA 646

Query: 660 VEAQIATLLEEMA 672
            EA+I  LL E+A
Sbjct: 647 CEARIQALLNEVA 659


>gi|77361018|ref|YP_340593.1| type I restriction-modification system M subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875929|emb|CAI87150.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 684

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 304/699 (43%), Positives = 411/699 (58%), Gaps = 45/699 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   S+   A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV EKY 
Sbjct: 1   MTDNNFSST--AAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPAVLEKYE 58

Query: 61  AFGGSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           A     I+ +       A  SFYNTS+  L+ LG T+  +NLESYI SFS NA+ IFE F
Sbjct: 59  AVKAMPIEAQDKLLTHAAQLSFYNTSKMDLNRLGETDVASNLESYIQSFSPNAREIFEHF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF +TI +L +A LLYK+ K F+  +LHPD + +  M  ++E LIRRF    +E A +  
Sbjct: 119 DFFNTIDKLAEADLLYKVAKRFATTDLHPDVINNYGMGLVFEELIRRFAESSNETAGEHF 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+V L T+L+   DD    +S G++R++YDPT GTGGFL+  M +V +         
Sbjct: 179 TPRDIVRLTTSLVFTNDDDALTQS-GLVRSIYDPTAGTGGFLSSGMEYVLELND----KA 233

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQEL PE++A+C A MLI+  + D       NI+ G+TLS D    ++F Y LSN
Sbjct: 234 SLSAFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRTEKFDYMLSN 286

Query: 299 PPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  +  EH + G  GRFG GLP++SDGS+LFLMHL +K+     GG R  
Sbjct: 287 PPFGVDWKKIQKQINDEHTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPQHEGGSRIG 346

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+W+LS  K   
Sbjct: 347 IILNGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWVLSTHKPAN 406

Query: 418 RRGKVQLINATDLWTSI------------------------RNEGKKRRIINDDQRRQIL 453
           R+GKVQLINA                               ++ G KR+ + +D    I+
Sbjct: 407 RKGKVQLINAAKERAKTGGRGRSGGGESTEEVENVFYAAMRKSLGSKRKELTEDAIDTIV 466

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL-DKTGLARLEADITWRKLSPLHQ 512
             Y       FS++ DY+ FGYRRI V RPL+++    D+  +  L  D  W KL+   Q
Sbjct: 467 KTYGQFVENDFSKIFDYQEFGYRRITVERPLQLAVYPKDELRITALTTDKAWDKLNEHAQ 526

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              L  L  +      Y   + F+K      E  T  VK S + +   +      D  A+
Sbjct: 527 HSILAALASLNND--KYLSRDVFLKALTTELETATPSVKLSAAQLKLIVKHLSEHDDEAE 584

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
                 G+   + +L + ENVP  ES+ DYF REV PHVP+A+ID    DE+DKE+G VG
Sbjct: 585 VC-KTKGKIEANPDLRDNENVPLTESVDDYFAREVLPHVPNAWIDTKKTDEQDKEVGIVG 643

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           YEI FNR FY+Y P R L +IDA+L  V ++I  LL+E+
Sbjct: 644 YEIPFNRHFYEYVPPRSLTEIDADLDKVSSEIMQLLQEV 682


>gi|282901857|ref|ZP_06309763.1| Type I restriction-modification system protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193253|gb|EFA68244.1| Type I restriction-modification system protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 676

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 271/679 (39%), Positives = 394/679 (58%), Gaps = 27/679 (3%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE- 70
            +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  +     +L+ 
Sbjct: 8   VSFIWSVADLIRDTFKRGKYQDVILPFTVLRRLDCVLEPTKVEVLEAYNKYKDDLDNLDP 67

Query: 71  SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              K +G++FYNTS Y    L     +   NL+ YI SFS N + + E FDF +TI +LE
Sbjct: 68  QLCKKSGFAFYNTSRYYFEKLLDDPKHLTANLKLYINSFSGNMREVLEKFDFPNTIDKLE 127

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           ++ LL+ + + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+V+ L  
Sbjct: 128 QSDLLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPREVIQLMV 187

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+   D A   +   + RT+YDP CG+GG LT A + + +          +   GQE+ 
Sbjct: 188 NLIFSQDKAQLSQE-YITRTVYDPCCGSGGMLTSAKDRILELNP----KADVFLFGQEVN 242

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           PET A+C + + ++ ++     ++      GSTLS D  + K F Y L+NPP+GK W++D
Sbjct: 243 PETFAICKSDLYMKSVDGRDAENIKF----GSTLSNDQHSDKTFDYLLANPPYGKDWKRD 298

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           KDAVE E +     RF  G P+ISDG +LFL  + ++++    GG R AIV++ SPLF G
Sbjct: 299 KDAVEAEAQKA-GSRFSAGTPRISDGQLLFLQQMLSRMKGVEQGGSRVAIVMNGSPLFTG 357

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AGSGESEIRRW+LEND +EAIVALP  LF+ T IATY+W+L+N K +ER+GKVQLINA+
Sbjct: 358 DAGSGESEIRRWILENDWLEAIVALPEQLFYNTGIATYIWVLTNHKAKERKGKVQLINAS 417

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           D W  +R   G KRR I  +Q ++I  I+ S    + S++ D   FGYR++ V RPL+++
Sbjct: 418 DFWVPMRKSLGSKRREIKSEQIQEITKIFESFAPSEVSKIFDSEDFGYRKVTVERPLKLN 477

Query: 488 FILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYPYGWAES 534
           F      + RL+    +  L+   +                  ++  M+Q +    + + 
Sbjct: 478 FQASPERIERLKEQSAFVALAVSKKKSAEGKAIEEHAGRDQQKLILAMLQTLPDTLYKDR 537

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594
              E +     K+  V  +     A + A   +D  A   +D  G   PD+ L + ENVP
Sbjct: 538 EQFEKVLKKAIKSEGVTVAAPVYKAILTALSERDETAKVCSDRQGNPEPDSELRDTENVP 597

Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
             E + +YF REV+PHVPDA+I +   D KD EIG+VGYEINFNR+FY+YQP R L++I+
Sbjct: 598 LKEDVAEYFEREVTPHVPDAWISEGVRDAKDGEIGKVGYEINFNRYFYKYQPPRALEEIE 657

Query: 655 AELKGVEAQIATLLEEMAT 673
           A++K VE +I  +L E+A 
Sbjct: 658 ADIKAVEGEILEMLREVAG 676


>gi|291287372|ref|YP_003504188.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|291287881|ref|YP_003504697.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884532|gb|ADD68232.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885041|gb|ADD68741.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 639

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 306/668 (45%), Positives = 420/668 (62%), Gaps = 35/668 (5%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             + AN IW  A+ L GDFK  ++G++ILPF +LRRLEC LEPTR +V E+Y A     +
Sbjct: 3   QQTFANKIWSVADLLLGDFKQAEYGRIILPFMVLRRLECVLEPTRESVLEQYEAVKDQGL 62

Query: 68  DLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           DL+  +  +AG +FY TS+++LSTLG+TNT+ NLE YI+ FS N + +FE F FSS I +
Sbjct: 63  DLDLILPGIAGCTFYTTSKFTLSTLGATNTKQNLEDYISKFSSNVRQVFEQFSFSSWIGK 122

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LE+A LLY +   F  +ELHP  V +  M  ++EHLIR+F    ++ A +F TPRDVV L
Sbjct: 123 LEEANLLYLVSNEFKDLELHPSVVSNYEMGLVFEHLIRKFAEASNDTAGEFYTPRDVVRL 182

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
           AT L+   D        G++RT+YD   GTGGFL+  +  V +  ++      ++P+ QE
Sbjct: 183 ATTLVFSTDQEALS-GEGIVRTIYDCAAGTGGFLSSGIELVGEWNTN----ATIIPYAQE 237

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PETHA+CVA  LI+  +       ++NI+ G+TLS DL +G+ F+YCL+NPPFG  W+
Sbjct: 238 LNPETHAICVADKLIQGYD-------TRNIKFGNTLSNDLLSGETFNYCLANPPFGVDWK 290

Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V  EH+  G  GRFGPGLP++SDGSMLFL+HL +K + P  GG R  IVLS SPL
Sbjct: 291 KVQKPVNDEHRVKGYAGRFGPGLPRVSDGSMLFLLHLLSKRKPPEEGGTRIGIVLSGSPL 350

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG AGSGESEIRRW+LEND +EA+VALPTD+F+ T I+TY+W+LS  K E R+G VQLI
Sbjct: 351 FNGGAGSGESEIRRWILENDWLEALVALPTDMFYNTGISTYIWVLSTNKEEHRKGLVQLI 410

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+ + T +R N G KR+ +ND+Q  +   I+ + E    S++ +   FGYRRI V RPL
Sbjct: 411 DASKISTPMRKNLGSKRKWLNDEQITETARIHDAFEESDVSKIFETEQFGYRRITVERPL 470

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           ++ F +                +     S   + +  + +    Y   +SF+K +     
Sbjct: 471 QLKFSVTPE------------NIESWANSKNAEYVDELSKVSGEYLDIDSFLKAAGIK-- 516

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604
                 K S + I      FG+  P A  + D  G  +PD +L +YENVP  E I +YF 
Sbjct: 517 ------KPSAALIKNICKFFGKHYPDAKVICDAKGNPLPDPDLRDYENVPLGEDIDEYFE 570

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           REV PHVPDA+ID    D KD  +G VGYEINFNR+FY+Y P R L+DIDA+L+ VE  I
Sbjct: 571 REVIPHVPDAWIDTAKKDHKDGLVGIVGYEINFNRYFYEYVPPRSLEDIDADLEAVENAI 630

Query: 665 ATLLEEMA 672
           A LL+++ 
Sbjct: 631 AELLKKVT 638


>gi|77166145|ref|YP_344670.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|254436238|ref|ZP_05049745.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
 gi|76884459|gb|ABA59140.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|207089349|gb|EDZ66621.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
          Length = 661

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 289/677 (42%), Positives = 406/677 (59%), Gaps = 24/677 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAF 62
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT+  V ++  +  
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKDKVVQQATVHQ 61

Query: 63  GGSNIDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              +   E  ++ A     F+N S  +L TL  T T  +L SY  SFS +A  IFE F+F
Sbjct: 62  HKPDHVREMLLRRAAGDLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + +L  A LLY++ + F+  +L P  + +  M  I+E LIRRF    +E A +  TP
Sbjct: 122 ENFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD+VHL T+L++   D   K +P  I T+YDPT GTGGFL++   ++            +
Sbjct: 182 RDIVHLTTSLVITGQDD--KLAPNRIVTIYDPTAGTGGFLSEGDEYIQSISE----KVSV 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSN 298
             HGQEL PE++A+C A MLI+  +         NI+ G+TLS D  TG   RF + LSN
Sbjct: 236 SLHGQELNPESYAICKADMLIKGQD-------VANIKLGNTLSNDQLTGPEHRFDFMLSN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  
Sbjct: 289 PPFGVEWKKVQKQITGEHKHKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL++DL+EAIVALPTD+F+ T IATY+W+LSN K  E
Sbjct: 349 IILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIVALPTDMFYNTGIATYVWLLSNHKPAE 408

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRGKVQLI+ +  +  +R   G KR+ +  +Q  +++ +Y + E    S++     FGYR
Sbjct: 409 RRGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVCLYGAFEETPQSKIFPINAFGYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPLR++F      +  +  +   +KL    +    D L  M      Y   E F 
Sbjct: 469 RITVERPLRLNFQASAERIDNVLQEKAIQKLDDTARQQLADALGAMDPSPL-YRNREQFA 527

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           K   K+  A    V  S     A +N  G++DP+AD  T   G+  PDT L + ENVP  
Sbjct: 528 KLLKKTLTA--HGVSLSTPEQKALLNGLGKRDPKADICT-TKGKPEPDTGLRDNENVPLG 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYF REV PHVPDA+I++   D  D E+G VG+EI FNR FY +QP R L++ID +
Sbjct: 585 ESVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRD 644

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 645 LKACTDRIKQMIEELSA 661


>gi|300113141|ref|YP_003759716.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299539078|gb|ADJ27395.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 662

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 288/677 (42%), Positives = 404/677 (59%), Gaps = 24/677 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAF 62
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT++ V ++  +  
Sbjct: 3   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKAKVVQQATVHQ 62

Query: 63  GGSNIDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              +   E  ++ A  G  F+N S  +L TL  T T  +L SY  SFS +A  IFE F+F
Sbjct: 63  HKPDHVREMLLRRAASGLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 122

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + +L  A LLY++ + F+  +L P  + +  M  I+E LIRRF    +E A +  TP
Sbjct: 123 ENFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTP 182

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD+VHL T+L++   D   K +P  I T+YDPT GTGGFL++   ++            +
Sbjct: 183 RDIVHLTTSLVITGQDD--KLAPNRIVTIYDPTAGTGGFLSEGDEYIQSISE----KVSV 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSN 298
             HGQEL PE++A+C A MLI+  +         NI+ G+TLS D  TG   RF + LSN
Sbjct: 237 SLHGQELNPESYAICKADMLIKGQD-------VANIKLGNTLSNDQLTGPEHRFDFMLSN 289

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  +  EHK  G  GRFGPGLP++ DGS+LFL+HL +K+  P +GG R  
Sbjct: 290 PPFGVEWKKVQKQISGEHKHKGFNGRFGPGLPRVPDGSLLFLLHLVSKMRDPRDGGSRIG 349

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL++DL+EAI+ALPTD+F+ T IATY+W+LSN K  E
Sbjct: 350 IILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIIALPTDMFYNTGIATYVWLLSNHKPAE 409

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRGKVQLI+ +  +  +R   G KR+ +  +Q  +++ +Y + E    S++     FGYR
Sbjct: 410 RRGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVRLYGAFEETPQSKIFPINAFGYR 469

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPLR++F      +  +  +   +KL    +    D L  M      Y   E F 
Sbjct: 470 RITVERPLRLNFQASAARIDNVLREKAIQKLDDTARQQLADALGAMDPSPL-YRNREQFA 528

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           K   K+  A    V  S     A +N  G +DP AD  T   G+  PDT L + ENVP  
Sbjct: 529 KLLKKTLTA--HGVSLSTPEQKALLNGLGERDPEADICT-TKGKPEPDTGLRDNENVPLG 585

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYF REV PHVPDA+I++   D  D E+G VG+EI FNR FY +QP R L+ ID +
Sbjct: 586 ESVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEAIDRD 645

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 646 LKACTDRIKQMIEELSA 662


>gi|126664814|ref|ZP_01735798.1| N-6 DNA methylase [Marinobacter sp. ELB17]
 gi|126631140|gb|EBA01754.1| N-6 DNA methylase [Marinobacter sp. ELB17]
          Length = 658

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 278/674 (41%), Positives = 399/674 (59%), Gaps = 21/674 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLA 61
              + + +A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT+  V    +   
Sbjct: 2   NAENNSQIAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKDQVLVGARAHV 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +  +  ++ A  +F+N S  SL +L  T T ++L SY+ SFS +A+ IFE F F 
Sbjct: 62  DKPDAVREKLLLREAEQTFFNASPLSLGSLSDTQTADDLMSYVQSFSQDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L    LLY++ + F+ I+L+P  + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSANNLLYQVVQRFASIDLNPKRISNFGMGLIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L+L   +   K  P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVLTGQE--HKLQPNSIVTIYDPTAGTGGFLSEGDEYIQQVSD----KVTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  + +        I+ G+TLS D     +    LSNPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQKVEQ-------IKLGNTLSDDQLYDLKADIMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L
Sbjct: 289 GVEWKKVQKQVTDEHKFKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL++D++EAIVALPTD+F+ T I+TY+WILSN K  ER+G
Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQSDMVEAIVALPTDMFYNTGISTYIWILSNNKPTERKG 408

Query: 421 KVQLINATDLWTSIRNEGKKRRII-NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLI+A+D  + +R     +R + ++  + +I+ +Y   +  + S++     FGYRRI 
Sbjct: 409 KVQLIDASDRASKMRKSLGSKRQLVSETDQDEIVRLYGEFQETEKSKIFPNDAFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F      +AR+  +   +KL    Q   L   + +      Y     F K  
Sbjct: 469 VERPLRLNFQTSDERIARITEEKAIQKLEEEEQEKILAACRAIDSNTL-YQNRPRFQK-- 525

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +        +V      + A +NA   +DP AD   +  G   PD  L + ENVP  ES+
Sbjct: 526 LLKAALTNHQVYPGTPQLKALMNALSERDPEADIC-ESKGNPEPDGGLRDNENVPLGESV 584

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA+ID+   DE+D E+G VG+EI FNR FY + P R L +IDA+LK 
Sbjct: 585 YDYFKREVIPHVPDAWIDESKTDEQDGEVGIVGFEIPFNRHFYVFTPPRPLDEIDADLKQ 644

Query: 660 VEAQIATLLEEMAT 673
              +I  ++E ++ 
Sbjct: 645 CTDRIKQMIEGLSA 658


>gi|73668549|ref|YP_304564.1| type I restriction-modification system methyltransferase subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72395711|gb|AAZ69984.1| type I restriction-modification system methyltransferase subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 680

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 275/687 (40%), Positives = 392/687 (57%), Gaps = 29/687 (4%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +     +FIW  A++ L  DFK  ++  VILPFT+LRRL+C L PT+  V E      G
Sbjct: 2   NNFQEKTSFIWSVADEVLRDDFKRGEYPDVILPFTVLRRLDCVLAPTKDKVLEYDKKLEG 61

Query: 65  S-NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                  +    +GYSFYNTS Y    L    T+   NL +YI  FS+N + + + F   
Sbjct: 62  KIENKNGALRHASGYSFYNTSPYDFEKLLAAPTSIGQNLRAYINGFSENMREVIDKFKLW 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI  LE+ GLL+ + + F+ ++LHPD V +  M  I+E LIR+F  + +E   +  TPR
Sbjct: 122 GTIDTLEEKGLLFLLIQKFANVDLHPDAVSNHEMGYIFEELIRKFNEQTNENPGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   LLL  D     ++  ++RT+YDP CGTGG LT A  H+ D   H      + 
Sbjct: 182 EVIRLMVNLLLSQDQEKLAQN-HIVRTVYDPACGTGGMLTIAKEHILD---HINPNANIK 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE+  +T A+  + MLI+  + D     + NI+  S+ SKD   G+ F Y LSNPP+
Sbjct: 238 LFGQEVNDKTFAISKSDMLIKGDDKD-----ADNIKPDSSFSKDGHAGETFDYILSNPPY 292

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           GK W+K++D +EKE K G  GRFG GLP+ SDG ++F+ H+ +K++    GG R AIV++
Sbjct: 293 GKDWKKEEDFIEKEAKKGYEGRFGAGLPRKSDGQLIFVQHMISKMKPTEEGGSRIAIVMN 352

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T I TY+WI++NRK E+RRGK
Sbjct: 353 GSPLFTGDAGSGESEIRRWIIENDWLEAIVALPNQLFYNTGINTYIWIITNRKDEQRRGK 412

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLINA D +  +R   G KR  I+  Q  +I  ++   +  +F ++ D   FGYR+I V
Sbjct: 413 VQLINAADFYVKMRKSLGDKRNEISPSQIEEITKLHTDFKENEFVKIFDDEAFGYRKITV 472

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---------------ILKPMMQQ 525
            RPLR++F      + RL+    ++KL+   +   L                I+  +   
Sbjct: 473 ERPLRLNFQASPERITRLKEQSAFQKLAVSKKKKDLQEKAREEAEGRKVREEIINALSGM 532

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
                + +    E   +   K   +K + +   +   A    D  A+   D  G    D+
Sbjct: 533 DANVFYTDREQFEKDLNAALKKADLKPATAVKKSIFEALSESDENAETCKDKKGNNEADS 592

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
            L + ENVP  E I  YF REV PHVPDA+ID+   D KD ++G+VGYEINFNR+FY+Y+
Sbjct: 593 QLKDTENVPLKEDIYTYFEREVKPHVPDAWIDETTRDPKDGKVGKVGYEINFNRYFYKYE 652

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMA 672
           P R L+DI+A++  +E +I  LL EMA
Sbjct: 653 PPRALEDIEADINKLENEILELLREMA 679


>gi|56459751|ref|YP_155032.1| Type I restriction-modification system methyltransferase subunit
           [Idiomarina loihiensis L2TR]
 gi|56178761|gb|AAV81483.1| Type I restriction-modification system methyltransferase subunit
           [Idiomarina loihiensis L2TR]
          Length = 660

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 277/675 (41%), Positives = 404/675 (59%), Gaps = 21/675 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A+FIW  A+ L G FK + +G+VILPFTLLRRLEC L P +  V E      
Sbjct: 2   NTENYSQTASFIWSVADLLRGHFKQSQYGRVILPFTLLRRLECVLAPNKQKVLEAAKQHQ 61

Query: 64  GSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +     ++ +   FYN S  +L+TL  T T  +L SY+ SFS +A+ IFE F+F 
Sbjct: 62  NKPDAVREQLLLRESQNDFYNASSLTLATLSDTQTAEDLISYVQSFSSSAREIFEHFNFE 121

Query: 122 STIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             + +L +A LLY+I + F S I+L  D + +  M  I+E LIR+F    +E A +  TP
Sbjct: 122 EFVLKLAEADLLYQITQQFGSKIDLSTDNISNYGMGLIFEELIRKFAESSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD VH AT+LL+   + +   SP  I T+YDPT GTGGFL+++  ++            +
Sbjct: 182 RDCVHAATSLLMTGQEEVL--SPNSIITIYDPTAGTGGFLSESEEYIQSISE----KVTV 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL  E++A+C A M+I+  E D       NI+ G+TLS D    ++F Y L+NPP
Sbjct: 236 KLFGQELNSESYAICKADMMIKSQEVD-------NIKLGNTLSNDQLAHEKFKYMLANPP 288

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG  W+  +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    NGG R  I+
Sbjct: 289 FGVDWKASQRVVNDEHKVKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDTRNGGSRIGII 348

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR+LL+NDL+EAIVALP+D+FF T I+TY+WILSN K  ER+
Sbjct: 349 LNGSPLFTGSAGSGESEIRRYLLQNDLVEAIVALPSDMFFNTGISTYIWILSNAKKPERK 408

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+ +D +  +R   G KR+ + ++   +++ +Y + E  K S++     FGYRR+
Sbjct: 409 GKLQLIDGSDAFAKMRKSLGSKRKYLTEENINELVRLYGAVEETKNSKVFPNEAFGYRRV 468

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            + RPLR++F   +  +ARL+ +   +KL       +  + + + Q      +       
Sbjct: 469 TIERPLRLNFQASEERVARLDDEKALQKL---KAEDFSQLKQAIQQIDADTLFINRDDFT 525

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
              + + K   +  + + + A +NA   +D  AD   D  G    D+ L +YENVP  + 
Sbjct: 526 RTLNAQLKVSDLNLTAAQLKAVLNALSERDSDADVCADKKGNPEADSGLRDYENVPLTDD 585

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I +YF R+V PHVPDA+ID+   DE+D EIG VG+EI FNR FY ++P R L++IDA+LK
Sbjct: 586 IYEYFERDVKPHVPDAWIDESKRDEQDGEIGIVGFEIPFNRHFYVFEPPRPLEEIDADLK 645

Query: 659 GVEAQIATLLEEMAT 673
               +I  ++EE++ 
Sbjct: 646 QCTDKIKQMIEELSA 660


>gi|329937002|ref|ZP_08286631.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces griseoaurantiacus M045]
 gi|329303609|gb|EGG47494.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces griseoaurantiacus M045]
          Length = 663

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 277/686 (40%), Positives = 395/686 (57%), Gaps = 42/686 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +     LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC LEPTR AV E    F 
Sbjct: 2   NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLEPTRDAVTETVERFA 61

Query: 64  GSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDFDF 120
           G +I+ + F+ K AG++FYNTS  +L  + +       NL+ Y+ASFSDNA+ + + F+F
Sbjct: 62  GQDINADKFLRKAAGHAFYNTSSLTLKKIAADPGSAAKNLQVYVASFSDNARGVLDRFEF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + RL+ AGLLYKI   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TP
Sbjct: 122 AQQVKRLDSAGLLYKIIGKFTDLDLRPEVVSNHNMGYIFEELIRRFSEQSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL+ PD     + PG++RT+ DP CGTGG L+   + + +      +    
Sbjct: 182 REVIQLMVRLLVAPDGDAL-QLPGVVRTVMDPACGTGGMLSATDDLIKELNPDATVE--- 237

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL PE+ A+C + ++I+    +       NI  G++ + D    + F Y L+NPP
Sbjct: 238 -VYGQELNPESWAICRSDLMIKGQNPE-------NIAFGNSFNDDGHARRTFDYLLANPP 289

Query: 301 FGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG---RA 356
           FG +W+K K+ VE+EH+  G  GRFG GLP+I+DGS+LFL H+ +K++     GG   R 
Sbjct: 290 FGVEWKKVKEDVEEEHEKLGSAGRFGAGLPRINDGSLLFLQHMISKMKPVDVNGGGGSRI 349

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV + SPLF G AGSGESEIRRW+LEND +E IVALP  LF+ T I+TY WIL+NRK+ 
Sbjct: 350 AIVFNGSPLFTGAAGSGESEIRRWILENDWLEGIVALPDQLFYNTGISTYFWILTNRKSP 409

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYV----SRENGKF-----SR 466
           + +GKV L++A D W  +R   G KR+ +  D    ++ +Y     + ++ +       +
Sbjct: 410 DHKGKVVLLDARDQWQKMRKSLGDKRKELGKDHIATVVKLYGEALSAAQDAEHPLHAKVK 469

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           + D   FGY+RI V RPL++ F + +  LA LEA    +KL     S  L+    +    
Sbjct: 470 VFDNTAFGYQRITVERPLKLRFEVTEETLAALEASKAIQKL--PQASVMLEAFASLKGSG 527

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
           +          +        T        F  A   A G +DP  + V  V G+   D  
Sbjct: 528 WSKKTDAWLALKDAVVQAGST--WPTGAPFNKALREAIGVRDPEGE-VQLVKGKPEADAE 584

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L +YENVP  E +++Y  REV PHVPDA+ID            ++GYEI F R FY Y+P
Sbjct: 585 LRDYENVPLGEDVEEYLEREVHPHVPDAWIDH--------SKTKIGYEIPFTRHFYVYKP 636

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMA 672
            R L +IDAELK +EA+I  LL E+ 
Sbjct: 637 PRPLAEIDAELKLLEAEIQGLLGEVT 662


>gi|299068120|emb|CBJ39335.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Ralstonia solanacearum CMR15]
          Length = 641

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 310/671 (46%), Positives = 415/671 (61%), Gaps = 37/671 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +LA  IW  A+ L GDF+ ++FG+VILPF +LRRLEC LEPT+  V  +Y    GS+
Sbjct: 2   NQQNLAADIWNIADTLRGDFRQSEFGRVILPFAVLRRLECVLEPTKREVLAQYETVKGSS 61

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL+  +   A  +FYNTS++SL+TLGST+TR NLE Y++ FS NA+ +FE F+F   + 
Sbjct: 62  IDLDLLLPATAKATFYNTSQFSLATLGSTSTRANLEDYVSKFSSNARQVFEHFEFGKWLE 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +LEKA LL+ + + FS  +LHP+T+ +  M   +EHLIR+F    ++ A +F TPRDVV 
Sbjct: 122 KLEKANLLFLVAQKFSVFDLHPETISNHEMGLAFEHLIRKFAESANDTAGEFFTPRDVVR 181

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T L+   D        G+IRT+YD   GTGGFL+  +  V +     +    L+P+ Q
Sbjct: 182 LVTTLVFATDHDALT-GDGVIRTVYDCAAGTGGFLSTGIEQVNEWNPSAR----LIPYAQ 236

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PET+A+CVA  LI+  +       +KNI+ G+TLS D    +RF YCL+NPPFG KW
Sbjct: 237 ELNPETYAICVADKLIQGYD-------TKNIKLGNTLSTDQLRNERFDYCLANPPFGVKW 289

Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSS 362
           EK +  V+ EH N G  GRFGPGLP++ DGS+LFLMHL +K +     + G R  IVLS 
Sbjct: 290 EKVQKEVQAEHVNEGYGGRFGPGLPRVGDGSLLFLMHLLSKRKPVNANSKGTRIGIVLSG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLFNG A SGESEIRRW+LEND +EAIV LPTDLF+ T I TY+W+LSN KT ER+  V
Sbjct: 350 SPLFNGGAASGESEIRRWILENDWLEAIVGLPTDLFYNTGIGTYIWVLSNNKTPERKNLV 409

Query: 423 QLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT + + + ++ G KR+ ++++Q   I  I  +  +   S++     FGYRRI V 
Sbjct: 410 QLIDATGMHSPMQKSLGSKRKRLSEEQIADIARIQAAMSDNGVSKLFKTTDFGYRRITVE 469

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPLRM F      +A   A       + L                           +SI 
Sbjct: 470 RPLRMRFEATDARVANFNAVTGDAYAAALENIRG--------------------TFKSIA 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
           +    T   K +K+ +     A G KDP A P+ D  G  + D +L E+ENVP  E I +
Sbjct: 510 ALLKSTGIKKLTKAHLKELTTAMGIKDPDAQPMKDEKGNVMADPDLREFENVPLGEDIYE 569

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  +EV PHVPDA+ID+   DEKD E+G VGYEINFNR+FYQYQP R L DIDA+LK +E
Sbjct: 570 YLDKEVLPHVPDAWIDESKKDEKDGEVGIVGYEINFNRYFYQYQPPRALADIDADLKAIE 629

Query: 662 AQIATLLEEMA 672
           A+IA LL E+ 
Sbjct: 630 AEIAGLLGEVT 640


>gi|254491699|ref|ZP_05104878.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010]
 gi|224463177|gb|EEF79447.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010]
          Length = 653

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 276/679 (40%), Positives = 404/679 (59%), Gaps = 36/679 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F+ S     +FIW  A+ L G+FK +++G+VILPFT+LRRL+C LE ++  V  K  
Sbjct: 1   MENFSTS----VSFIWSIADILRGNFKQSEYGRVILPFTVLRRLDCVLEASKGDVLNKLK 56

Query: 61  AFGGS---NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115
           +   +    +        AG +F+NTS Y+   L     N   NL  +I  FSD+A+ IF
Sbjct: 57  SLSDNVDHTMRETMLNMAAGQNFHNTSPYTFQKLLDDPDNIAANLSHFINGFSDDAREIF 116

Query: 116 -EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + F     I RL+K  LLY +   F+  +LHPD V +  M  ++E LIRRF  + +E A
Sbjct: 117 IDRFKLPEQITRLDKDNLLYLVVSKFAQADLHPDAVSNLQMGYMFEELIRRFSEQSNETA 176

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   LL   D  +  + PG+IR L+DP CGTGG L+ A +++ +     
Sbjct: 177 GEHFTPREVIRLMVDLLFYEDADVLTK-PGIIRKLFDPACGTGGMLSIAEDYLRELNPDA 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +      +GQEL  E++ +C + M+I+   +       KNI  G++ S+D    ++F Y
Sbjct: 236 HLE----VYGQELNDESYGICKSDMIIKGQNA-------KNIHPGNSFSEDGLEDEQFDY 284

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K + A+++E    G  GRFG GLP++SDGS+LF+ H+ +K     +  
Sbjct: 285 MLSNPPFGVEWKKVEKAIKEEANTLGLKGRFGAGLPRVSDGSLLFVQHMISKFNRNGDP- 343

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R A+VL+ SPLF G AGSGESEIRRW++END +EAIVALPTD+F+ T IATY+WI++N+
Sbjct: 344 SRLAVVLNGSPLFTGSAGSGESEIRRWIIENDWLEAIVALPTDMFYNTGIATYIWIITNK 403

Query: 414 KTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  +R+GKVQLINATD  + +R   G KR+ I  +Q + I +++ + E  + S++ D   
Sbjct: 404 KKPQRKGKVQLINATDFHSPMRKSLGSKRKQIAPEQIKTIAELFGNFEESEQSKIFDNSD 463

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           FGY+RI V RPL+++F +D+  L  L  +  + KL    Q   +  L+ +  +   Y   
Sbjct: 464 FGYQRITVERPLKLNFNVDEERLELLRDNKAFSKLDKTDQQTIITALETLPGRGL-YLNR 522

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
           ++FVK+  K+   K+ +VKA        ++A   +D  AD  T+  G+  PD+ L +YEN
Sbjct: 523 DTFVKDMDKA--LKSAQVKAGAPLKKVILSALSERDENADVCTNNKGKPEPDSELRDYEN 580

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E I  YF REV PHVPDA+ID         +  +VG+EI FNR FYQY P R L++
Sbjct: 581 VPLKEDIDTYFQREVIPHVPDAWIDY--------DKTKVGFEIPFNRHFYQYVPPRPLEE 632

Query: 653 IDAELKGVEAQIATLLEEM 671
           IDAEL  V A+I  LL E+
Sbjct: 633 IDAELDAVTAEILELLREV 651


>gi|307720088|ref|YP_003891228.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978181|gb|ADN08216.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
          Length = 652

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 290/669 (43%), Positives = 414/669 (61%), Gaps = 26/669 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            S++  IW  A+ L GD+K +D+GK+ILPFTLLRRLEC LEPTR  V  +  A     I 
Sbjct: 4   QSISALIWSTADLLRGDYKQSDYGKIILPFTLLRRLECVLEPTRDDVLTENEARKNLGIP 63

Query: 69  LESFV-KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +E F+ + +G+SFYNTS+Y+L+ L S   N   NLESYI  FS NA+ IFE ++F++ I 
Sbjct: 64  MEQFLTRKSGHSFYNTSKYTLTKLMSDPSNISQNLESYINDFSPNAREIFEKYEFTAQID 123

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L +A LLY I + F+ ++LHPDT+ +  M  ++E LIR+F  + +E A +  TPRD+V 
Sbjct: 124 KLNEANLLYLIIEKFATVDLHPDTISNHAMGIVFEELIRKFAEQSNETAGEHFTPRDIVR 183

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T+LL   DD +  +  G++R+LYDPT GTGGFL+    +V +          LV  GQ
Sbjct: 184 LTTSLLFSTDDDVLTKK-GIVRSLYDPTAGTGGFLSSGSEYVHELNPD----ATLVTFGQ 238

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A M+I+ ++ +       NI+ G+TLS D     +F Y LSNPPFG +W
Sbjct: 239 ELNGESYAICKADMMIKGVQVE-------NIKHGNTLSDDQLGENKFDYMLSNPPFGVEW 291

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V+ E+ + G  GRFGPGLP++SDGS+LFL+HL +K+     GG R  I+L+ SP
Sbjct: 292 KKVEKVVKAENAEQGYNGRFGPGLPRVSDGSLLFLLHLVSKMRPKREGGSRIGIILNGSP 351

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LEND +EAIVA+P D+FF T IATY+WILSN K E R+G+VQL
Sbjct: 352 LFTGGAGSGESEIRRYILENDYLEAIVAMPNDMFFNTGIATYIWILSNNKPEHRQGEVQL 411

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA+ +  ++R   G KR+ +++ Q   I+ IY      K S++ +   FGYRRI V R 
Sbjct: 412 INASSMGNAMRKSLGSKRKFLDETQISDIVRIYGENAAAKISKIFNITDFGYRRITVERS 471

Query: 484 LRMSFIL-DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L++S+   D   L  L+ D  + K+  L           ++  +      +   +   K+
Sbjct: 472 LQLSYFPHDADKLESLQNDKVFVKMKELGAE--------ILTALGAIESDKIMSRTEFKN 523

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
             +K +  K S +            D  A+   D  G+   + +L +YEN+P  E I +Y
Sbjct: 524 ELSKKMTSKLSATQFKLVQKHISMHDDEAELCKDSKGKLEANADLRDYENIPLSEDINEY 583

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F REV+PHVP A+ID+   D KD E+G VGYEI FNR FY+Y P R L++IDAEL+ + A
Sbjct: 584 FAREVTPHVPLAWIDEKKRDAKDGEVGIVGYEIPFNRHFYEYAPPRPLEEIDAELETLNA 643

Query: 663 QIATLLEEM 671
           +I  +L E+
Sbjct: 644 EIMEMLREI 652


>gi|218248664|ref|YP_002374035.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218169142|gb|ACK67879.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 676

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 269/683 (39%), Positives = 394/683 (57%), Gaps = 27/683 (3%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  + G 
Sbjct: 2   QNFGEKVSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61

Query: 66  NIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +L+    K +G++FYN S Y    L     +   NL+ YI SFS N + + E FDF +
Sbjct: 62  LENLDPILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           TI +LE+A LL+++ + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+
Sbjct: 122 TIDKLEEADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L  +LLL  D    K++  + RT+YDP CG+GG LT A   + +   +      +  
Sbjct: 182 VIRLMVSLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPN----ATVFL 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PET A+C + + ++  +       + NI+ GSTLS D  + K F Y L+NPP+G
Sbjct: 237 FGQEVNPETFAICKSDLYMKSEDG----KDADNIKFGSTLSNDQHSDKSFDYLLANPPYG 292

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K W++DKDAVE E +     RF  G P+ISDG +LFL  +  +++ P NGG R AIV++ 
Sbjct: 293 KDWKRDKDAVETEAQK-TGSRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNG 351

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW+LEND +EAI+ALP  LF+ T I+TY+WILSN+K  +++ KV
Sbjct: 352 SPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKV 411

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLIN +D W ++R   G KRR I+ +   +I  I+   E  + S+  +   FGYR+I + 
Sbjct: 412 QLINGSDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIE 471

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYP 528
           RPLR++F +    + R++    +  L+   +                  ++  ++  +  
Sbjct: 472 RPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSD 531

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
             + +    E +     K   V    +   A +     KD  A+   D +G   PDT L 
Sbjct: 532 ELYKDRKPLELLLKKAFKVENVAVKGALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  E I DYF REV PHV DA+I++   D KD  +G+VGYEINFNR+FYQYQP R
Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           +L +I+ +++ VE +I  +L+EM
Sbjct: 652 ELSEIEKDIQQVEGEILAMLKEM 674


>gi|188585425|ref|YP_001916970.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350112|gb|ACB84382.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 673

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 273/691 (39%), Positives = 401/691 (58%), Gaps = 48/691 (6%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            S     NFIW  A+ L GD+K +D+GKVILPFT+L+RL+CAL+PT++ V E+Y     S
Sbjct: 4   ASFQEKVNFIWSIADLLRGDYKRSDYGKVILPFTVLKRLDCALKPTKNKVLEEYKMLKDS 63

Query: 66  NIDLES--FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFS 121
            I         + G  F+NTS++    + +   N  +NL  YI  FS NA+ I E F+F 
Sbjct: 64  GIQNPEPVLNDITGQHFHNTSQFDFEKMKNEPDNIGDNLRHYINGFSTNARDIIEYFNFH 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + RLE++ LLY I   FS I+L P+ V +  M  I+E LIR+F  + +E A +  TPR
Sbjct: 124 DHLERLEQSNLLYLIVSRFSEIDLSPEKVSNLEMGYIFEELIRKFSEQSNETAGEHFTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   LL + D  L ++  G++RT+YDP CGTGG L+ A +++ +  +  K+     
Sbjct: 184 EVIRLMVNLLFNEDSDLLQKE-GLLRTIYDPACGTGGMLSVARDYLRELNNDAKLE---- 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A M+I+ L+ D       NI+ G++ + D F+   F Y LSNPPF
Sbjct: 239 MFGQELNPESYAICKADMMIKGLDPD-------NIKFGNSFTNDGFSDNTFDYMLSNPPF 291

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  +++EH+N G  GR+G GLP+I+DGS+LFL H+ +K++   NGG R AIVL
Sbjct: 292 GVEWKKIEKEIKEEHENLGFSGRYGAGLPRINDGSILFLQHMISKMQHQ-NGGSRIAIVL 350

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AG GES IR+W++ENDL+EAIVALP  LF+ T I TY+W+L+NRK   R+G
Sbjct: 351 NGSPLFTGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYVWVLTNRKRPWRKG 410

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QLINA + +  +R   G+KR  I+ +Q  +I  IY   + G++S++ D   FGY +I 
Sbjct: 411 KIQLINAVEFYKKMRKSLGEKRHEISPEQIDKISKIYGEFKEGEYSKIFDNEDFGYYKIT 470

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLS-----------------PLHQSFWLDILKPM 522
           V RPLR++F      + RL+    ++ L+                    Q   +++LK M
Sbjct: 471 VERPLRLNFQASDERIERLKEQRAFQNLAKSKKKDPAKKEEEINEGEEQQEAIINVLKSM 530

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
            + +  Y   E F K  I     K   +K   S   A + A   +D  A+  TD  G   
Sbjct: 531 DETV--YKNREEFTK--ILDEALKDAGIKLKASLKKAVLKALSEQDETAEICTDSKGNPE 586

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           PD +L + E V   + I  YF REV PHVPDA+ID+           ++GYEI F R FY
Sbjct: 587 PDPDLRDNEIVSLKDDINGYFEREVKPHVPDAWIDE--------SKTKIGYEIPFTRHFY 638

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +Y+P R+ + I  E+  +E  I   L+++  
Sbjct: 639 KYEPPREPEVIMEEIIELEHDIKEELKKVIG 669


>gi|257061734|ref|YP_003139622.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
 gi|256591900|gb|ACV02787.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
          Length = 676

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 269/683 (39%), Positives = 393/683 (57%), Gaps = 27/683 (3%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  + G 
Sbjct: 2   QNFGEKVSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61

Query: 66  NIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +L+    K +G++FYN S Y    L     +   NL+ YI SFS N + + E FDF +
Sbjct: 62  LENLDPILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           TI +LE+A LL+++ + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+
Sbjct: 122 TIDKLEEADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L  +LLL  D    K++  + RT+YDP CG+GG LT A   + +   +      +  
Sbjct: 182 VIRLMVSLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPN----ATVFL 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PET A+C + + ++  +       + NI+ GSTLS D  + K F Y L+NPP+G
Sbjct: 237 FGQEVNPETFAICKSDLYMKSEDG----KDADNIKFGSTLSNDQHSDKSFDYLLANPPYG 292

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K W++DKDAVE E +     RF  G P+ISDG +LFL  +  +++ P NGG R AIV++ 
Sbjct: 293 KDWKRDKDAVETEAQK-TGSRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNG 351

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW+LEND +EAI+ALP  LF+ T I+TY+WILSN+K  +++ KV
Sbjct: 352 SPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKV 411

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLIN +D W ++R   G KRR I+ +   +I  I+   E  + S+  +   FGYR+I + 
Sbjct: 412 QLINGSDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIE 471

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYP 528
           RPLR++F +    + R++    +  L+   +                  ++  ++  +  
Sbjct: 472 RPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSD 531

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
             + +    E +     K   V    +   A +     KD  A+   D +G   PDT L 
Sbjct: 532 ELYKDRNPFELLLKKAFKVENVAVKGALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  E I DYF REV PHV DA+I++   D KD  +G+VGYEINFNR+FYQYQP R
Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           +L +I+ +++ VE  I  +L+EM
Sbjct: 652 ELSEIEKDIQQVEGAILAMLKEM 674


>gi|217977715|ref|YP_002361862.1| N-6 DNA methylase [Methylocella silvestris BL2]
 gi|217503091|gb|ACK50500.1| N-6 DNA methylase [Methylocella silvestris BL2]
          Length = 673

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 280/686 (40%), Positives = 397/686 (57%), Gaps = 34/686 (4%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++L +F+W  AE L GDFK +D+GKVILPF ++RRL+C LE T+  V E   +    
Sbjct: 4   EKTSNLGSFVWSIAEILRGDFKQSDYGKVILPFIVMRRLDCILEATKPYVLEAAKSLPEG 63

Query: 66  NIDLES---FVKVAGYSF--YNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIF-E 116
             D          AG     YNTS ++ ++L   +     +NL  +I  FS N + IF +
Sbjct: 64  IDDETRDMILFGAAGDKIRVYNTSRFTFTSLKGQDPGQVHDNLIDFITGFSPNVRDIFLD 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F+  + RL+  G+L+++ + F  I+LHP+ V +  M  ++E LIRRF    +E A +
Sbjct: 124 KFRFTEALKRLKDGGILWQVFERFCAIDLHPNHVSNIEMGYLFEDLIRRFSEISNETAGE 183

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   LLL  D A      G+IRT+YDP CGTGG L      +       ++
Sbjct: 184 HFTPREVIRLIVELLLANDHAALT-GTGIIRTVYDPACGTGGMLALTEEAMTALNPKVRV 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQEL  E+  +C + ML+     +           G+TL++D   GK FHY L
Sbjct: 243 E----LFGQELNGESFGICKSDMLVTGHNPEQIAF-------GNTLTEDAHLGKTFHYML 291

Query: 297 SNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SNPP+G  W+K +D +  EH+  G  GRFGPGLP+ISDG +LFL+H+ +K+      G R
Sbjct: 292 SNPPYGVDWKKYQDPIRAEHETKGFDGRFGPGLPRISDGQLLFLLHMISKMR-DDEQGSR 350

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             IV++ SPLF G AGSGESEIRRW+LE D +EAIVA+PTDLF+ T I+TY+W+L+NRK 
Sbjct: 351 IGIVMNGSPLFTGGAGSGESEIRRWMLEKDWVEAIVAMPTDLFYNTGISTYVWLLNNRKP 410

Query: 416 EERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG-----KFSRM 467
             RRGKVQLI+A+    W S+R   G KRR I +  R +I+ IY    NG     +FS++
Sbjct: 411 SARRGKVQLIDASSERFWKSMRKSLGSKRREIPEAARHEIVRIYAEMLNGDGPYGEFSKI 470

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +D   FGYR I++ RPLR++F      LARL  +   +KL    +   LD L   +    
Sbjct: 471 VDREDFGYREIRIERPLRLNFQATPKRLARLAEEKAVQKLEIGERQELLDALAHNLP-TQ 529

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587
            +   ++F K   ++   K +  K       A ++A   +D  AD   D NG+   DT L
Sbjct: 530 SFTNRDAFEKVLTRA--LKGVGGKIGAPLKKAILSALSERDESADICLDANGKPESDTQL 587

Query: 588 TEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
            ++E VP  +  +D+  REV+P VPDA++D+ + D++D E GRV YEINFNR+FY+Y P 
Sbjct: 588 RDHELVPLNDDWRDFVAREVTPFVPDAWVDENYRDDRDGETGRVAYEINFNRYFYKYVPP 647

Query: 648 RKLQDIDAELKGVEAQIATLLEEMAT 673
           R L  ID ELK +EA+IA LL+E+A 
Sbjct: 648 RPLAQIDCELKQLEAEIAGLLKEVAA 673


>gi|298674424|ref|YP_003726174.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287412|gb|ADI73378.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 679

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 269/695 (38%), Positives = 408/695 (58%), Gaps = 40/695 (5%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+ F       ANFIW  A++ L  DFK   +  VILPFT+LRR+EC LEPT+  V + Y
Sbjct: 1   MSNFQEK----ANFIWSVADEVLRDDFKRGKYRDVILPFTVLRRVECVLEPTKDNVIQTY 56

Query: 60  LAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
                   D   +    AG+SFYNTS Y L  L    +N   N +SYI SFS+N + IF+
Sbjct: 57  ENVKDKVKDPHNALCHAAGHSFYNTSPYDLKKLLDDPSNIGQNFKSYINSFSENMRDIFD 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F   + I +L +  LLY + + FS ++LHPD+V +  M  I+E LIRRF  +V+E   +
Sbjct: 117 KFYLWNYIDQLIEDNLLYMLLEKFSNVDLHPDSVSNHEMGYIFEELIRRFNEDVNENPGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   L+   D+A    +   IRT+YDP CGTGG LT A +H+         
Sbjct: 177 HFTPREVIRLMVNLIFYQDEAKLGHNT-PIRTIYDPACGTGGMLTIANDHIL---KEINS 232

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +   GQE+ PET A+  + M+++  + D       NI+ GS  S D    + F+Y L
Sbjct: 233 NADIWLFGQEVNPETFAIAKSDMMLKGNDRDAE-----NIKMGSVFSNDGHPNETFNYML 287

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFGK W+K+++ + +E K+    RF  GLP+  DG +LFL H+ +K++ P +GG R 
Sbjct: 288 SNPPFGKDWKKEQNFILEEAKSAS-SRFTAGLPRKDDGQLLFLQHMISKMKRPEDGGSRI 346

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T I TY+WI++NRK +
Sbjct: 347 AVVTNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGINTYVWIVTNRKED 406

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+GK+QL++A + +  +R   G+KR  I+ +Q   I +++ +   G++S++ D   FGY
Sbjct: 407 HRKGKIQLVDARECYQKMRKSLGEKRHEISSEQIDTITNLHNNFNEGQYSQIFDNHEFGY 466

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH------------------QSFWLD 517
           R+I + +PLR+SF +    + +L+    ++ L+                     Q   ++
Sbjct: 467 RKITIEQPLRLSFQVTPERIEQLKEQKAFKNLAVSKKRKNTEEKEKEEAEGQKLQDSIIE 526

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           +L  M  + + Y   + F K  + ++  K   +  + +   A +++   +D  AD   D 
Sbjct: 527 MLSEMDSEKF-YKNRDEFWK--VLNDNLKKHGININNTVEKAILDSMSERDETADICVDS 583

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              W PD+ L +YENVP  E I DYF REV PHVP+A+ID+   D+ D ++G+VGY INF
Sbjct: 584 KKRWEPDSQLRDYENVPLDEDIYDYFEREVKPHVPEAWIDESKTDQYDNDVGKVGYIINF 643

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           NR+FY+Y+P R L++I++++  +E +I  LL+E++
Sbjct: 644 NRYFYEYEPPRPLEEIESDINDLENEILELLQEVS 678


>gi|134097472|ref|YP_001103133.1| type I restriction-modification system methyltransferase subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910095|emb|CAM00208.1| type I restriction-modification system methyltransferase subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 652

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 275/677 (40%), Positives = 402/677 (59%), Gaps = 41/677 (6%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +AN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L+PTR  V E    +   ++D +
Sbjct: 1   MANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLKPTRGKVLETVEKYRNRDLDPD 60

Query: 71  SFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +F++ A G+ FYNT+  +L ++   S++   NL  YI  FS NA  + E +DF+  I +L
Sbjct: 61  TFLRKASGHRFYNTTPLTLKSIVADSSHVARNLTQYIGGFSPNAYEVLERYDFAQQIKKL 120

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + A LLYK+   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TPR+V+ L 
Sbjct: 121 DGANLLYKVTSTFADLDLRPEVVDNHQMGYIFEELIRRFAEQSNETAGEHFTPREVIELM 180

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL+ PDD    + PG+IR + DP CGTGG L+ A  H+    +   +      +GQEL
Sbjct: 181 VNLLIAPDDEALSK-PGVIRRVLDPACGTGGMLSAAYEHITTMNADATVE----VYGQEL 235

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            PE+ A+C + ++I+  + D       NI+ G++ S D    + FHY L+NPPFG +W+K
Sbjct: 236 NPESWAICRSDLMIKDQDPD-------NIKFGNSFSDDGHYRRTFHYLLANPPFGVEWKK 288

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            K+ VE + +  GE  RF P LP+I+DGS+LFL H+ +K+    +GGGR AIV + SPLF
Sbjct: 289 VKEDVEGDLEQLGENSRFWPALPRINDGSLLFLQHMLSKMNSVEDGGGRVAIVFNGSPLF 348

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G AGSGES+IR+ +LEND +EA+VALP  LF+ T I+TY WIL+NRK+ + +GKV L++
Sbjct: 349 TGAAGSGESQIRQHILENDWLEAVVALPDQLFYNTGISTYFWILTNRKSPDYKGKVVLLD 408

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIY-----VSRENGK----FSRMLDYRTFGYR 476
           A + W  +R   G KR+ +  DQ  +I  +Y     V+++         ++ +   FGYR
Sbjct: 409 AREYWQKMRKSLGDKRKYVASDQIAEITRLYAEALQVAKDENHPLHGKVKVFENDDFGYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPL++ F   +  LA L      +KL    Q  ++  L+P++ Q +   W ++  
Sbjct: 469 RITVERPLKLRFEFTEEILASLGEAKQIQKLDDPEQ--FVAALRPLLGQTW---WKKTEA 523

Query: 537 KESIKSNE-AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
             ++K    A  L      +F  A  +A G +DP  + V    GE  PD  L +YENVP 
Sbjct: 524 WLALKDAIVAAGLTWPTGAAFNKALRDAIGVRDPEGE-VQIAKGETEPDPELRDYENVPL 582

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            + ++DY  REV PHVPDA+ID            ++GYEI F R FY Y+P R L +IDA
Sbjct: 583 DQDVEDYLEREVLPHVPDAWIDHTK--------TKIGYEIPFTRHFYVYEPPRPLAEIDA 634

Query: 656 ELKGVEAQIATLLEEMA 672
           ELK +EA+I  LL E+ 
Sbjct: 635 ELKALEAEIQELLGEVT 651


>gi|114563774|ref|YP_751287.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400]
 gi|114335067|gb|ABI72449.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400]
          Length = 683

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 297/700 (42%), Positives = 404/700 (57%), Gaps = 51/700 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A  +W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+  V  KY A  
Sbjct: 1   MTNNFSQTAALLWSVADILRGDFKQSQYGRIILPFTLLRRLECVLEATKPDVLAKYEAVK 60

Query: 64  GSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              ++ +       A  SFYNTS+  L  LG     +NLESYI SFS NA+ IFE FDF 
Sbjct: 61  AMPLEAQDKLLTHTAQLSFYNTSKMDLHRLGEMGIASNLESYIQSFSPNAREIFEHFDFF 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +TI +L +A LLYK+ K F+   L P+ + +  M  ++E LIRRF    +E A +  TPR
Sbjct: 121 NTIDKLAEADLLYKVAKQFANAPLSPENISNYGMGLVFEELIRRFAESSNETAGEHFTPR 180

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+V L T+L+   DD +  ++ G++R++YDPT GTGGFL+  M ++ +          L 
Sbjct: 181 DIVRLTTSLVFSNDDDVLTQA-GLVRSIYDPTAGTGGFLSSGMEYLHELNE----KASLS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A MLI+  + D       NI+ G+TLS DL    +F Y LSNPPF
Sbjct: 236 AFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDLLRNDKFDYMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+K +  +  E+ + G  GRFG GLP++SDGS+LFLMHL +K+     GG R  I+L
Sbjct: 289 GVDWKKIQKFINTEYTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPKHEGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           + SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+WILS+ K      
Sbjct: 349 NGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWILSSNKGASHNG 408

Query: 418 -RRGKVQLINATDLWTSI------------------------RNEGKKRRIINDDQRRQI 452
            R+GKVQLINA+                              ++ G KR+ + +D    I
Sbjct: 409 ARKGKVQLINASKERAKTGGRGRSGGGESDEVVENIFYAPMRKSLGSKRKELTEDGIETI 468

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL-DKTGLARLEADITWRKLSPLH 511
           +  Y       FS++ DY  FGYRRI V RPL+++    D+T +A L+AD  W KL    
Sbjct: 469 VKTYGQFIENDFSKIFDYHVFGYRRITVERPLQLAIYPKDQTRVAALQADNAWDKLDQAV 528

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
           Q   +D L    +        ++F+KE +K    K   +K S       +   G  D  A
Sbjct: 529 QYSVIDSLAGFTED--KLLSRDAFLKELMK----KLNGIKLSSVQQKLIVKHLGEHDDDA 582

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
                  G    + +L ++ENVP  ESI  YF REV PHVP+A+IDK   D KD E+G V
Sbjct: 583 QLC-KAKGRVEANPDLRDFENVPLTESIYKYFDREVIPHVPNAWIDKTKTDPKDHEVGIV 641

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI FNR FY+Y   R+L+DIDA+L  V  +I  LL E+
Sbjct: 642 GYEIPFNRHFYEYASPRELEDIDADLDIVSTEIMQLLNEV 681


>gi|297157212|gb|ADI06924.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 698

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 268/714 (37%), Positives = 386/714 (54%), Gaps = 63/714 (8%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +     LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L PT+  V E    + 
Sbjct: 2   NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLAPTKDKVLEVAARYQ 61

Query: 64  GSNIDLESFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           G +I+ + F+++A G+SFYNTS Y+L  +   +++    L  Y  +FS NA+ + E +DF
Sbjct: 62  GQDINPDRFLRIASGHSFYNTSTYTLKAIAGDASHVAKYLNEYYGAFSPNAREVLERYDF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP------------------DTVPDRVMSNIYEHL 162
           +  I RLE A LLY++   F+ ++L P                  + V +  M  I+E L
Sbjct: 122 AQQIKRLETANLLYQVVGRFADLDLRPVKRDADGKVVLGEDGKPVEIVSNHQMGYIFEEL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IRRF  + +E A +  TPR+V+ L   LL+ PD       PG +RT+ DP CGTGG L+ 
Sbjct: 182 IRRFAEQSNETAGEHFTPREVIRLMVNLLVAPDSDALAL-PGTVRTVMDPACGTGGMLSA 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--- 279
           A   +            +   GQEL PE+ A+C + M+I+  + +  +  +   Q G   
Sbjct: 241 AEERITALNPD----ATVKVFGQELNPESWAICRSDMMIKGQDPENIKFGNSFSQDGFSR 296

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLF 338
               +D  T   F Y L+NPPFG +W+K KDAVE EH+  GE GRFG GLP+I+DGS+LF
Sbjct: 297 DDSRRDKNTPTTFDYLLANPPFGVEWKKVKDAVEDEHERLGESGRFGAGLPRINDGSLLF 356

Query: 339 LMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           L H+ +K++       GG R AIV + SPLF G A SGES IR+W+LE+D +E IVALP 
Sbjct: 357 LQHMISKMKPVDASGAGGSRIAIVFNGSPLFTGAAESGESRIRQWILEHDWLEGIVALPD 416

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILD 454
            LF+ T I+TY W+LSNRK  +RRGKV L++A D W  +R   G KR+ ++D    +I  
Sbjct: 417 QLFYNTGISTYFWVLSNRKARDRRGKVVLLDARDYWQKMRKSLGDKRKELSDQHISEITR 476

Query: 455 IYVS-----RENGKFS-----------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +Y           + S           ++     FGYRRI V RPL++ F + +  L+ +
Sbjct: 477 LYTDALAVVDAAERGSGHDLADRAGKIKVFRNEDFGYRRITVERPLKLRFEVTEETLSAI 536

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            A     + +      ++  L+P++ +   +        +   +  A  L       F  
Sbjct: 537 TASKPIARATDAE--AFVAALRPLVGKS--WTTKSDAWIDLKDAVVAAGLLWPTGAPFSK 592

Query: 559 AFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDK 618
           A   A G +DP  +      G+  PD  L +YENVP  E +++Y  REV PHVPDA+ID 
Sbjct: 593 ALREAVGVRDPEGEEQ-KAKGQPEPDPELRDYENVPLGEDVEEYLRREVLPHVPDAWIDH 651

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
                      +VGYEI   R FY Y+P R L +IDA+LK +E++I  LL E+ 
Sbjct: 652 TK--------TKVGYEIPVTRHFYVYKPPRPLAEIDADLKALESEIQALLGEVT 697


>gi|226940440|ref|YP_002795514.1| HsdM [Laribacter hongkongensis HLHK9]
 gi|226715367|gb|ACO74505.1| HsdM [Laribacter hongkongensis HLHK9]
          Length = 613

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 267/671 (39%), Positives = 373/671 (55%), Gaps = 65/671 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + ++L+ FIW  A+ L GD+K +++GKVILPFT+LRRL+C L  T+ AV  +      + 
Sbjct: 2   NPSALSAFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLADTKPAVLAELQLRSDAG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E F+ + AG SFYNTS   LS L     + R NL +YI  FS  A+ IFE FDF + 
Sbjct: 62  VNPEPFLLRKAGQSFYNTSPLDLSKLLGDQDHIRENLYAYIQGFSPAARDIFERFDFFTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KAGLLY + + F+ I+LHP +V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKAGLLYLVTEKFANIDLHPASVDNASMGLVFEELIRKFAEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +      ++RTLYDPT GTGG L+ A   +A+     +    L   
Sbjct: 182 IRLMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVAGEFLAEHNPQAR----LTLF 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F Y LSNPPFG 
Sbjct: 238 GQELNDESYAICKADMLIKGQD-------VGNIVAGNTLSDDGHGARKFDYMLSNPPFGV 290

Query: 304 KWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + AV  EH + G  GRFGPGLP++SDGSMLFLMHL +K+     GG R  IVL+ 
Sbjct: 291 EWKKVEKAVRDEHERKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPASEGGCRFGIVLNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T IATY+W+LSN+K  +R G+V
Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGIATYIWVLSNKKPADRAGQV 410

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A   W  +R   G KR+ ++D+    +  ++      +   +LD            
Sbjct: 411 QLIDAGSFWQKMRKSLGSKRKEMSDEHIATVTRLFGDFTEAEMVTVLDAAGV-------- 462

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            P     ++  T    +  +    K  P+ + F              +G+    V+   +
Sbjct: 463 -PQGEPVLVTSTDPQPVAPEGGRLKRVPIARIF----------DNADFGYTTITVERPQR 511

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                 +                G K  +        G+  PDT+L + ENVP  + I  
Sbjct: 512 DEAGNVV---------------LGVKGKQ-------KGKPQPDTSLRDTENVPLKDDIDA 549

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID         +  +VGYEI FNR FY ++P R L  ID ELK V 
Sbjct: 550 YFQREVLPHAPDAWIDP--------DKTKVGYEIPFNRHFYVFEPPRSLATIDEELKAVS 601

Query: 662 AQIATLLEEMA 672
           A+I  +L E+A
Sbjct: 602 ARIMAMLGELA 612


>gi|320352392|ref|YP_004193731.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032]
 gi|320120894|gb|ADW16440.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032]
          Length = 730

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 260/744 (34%), Positives = 369/744 (49%), Gaps = 89/744 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + + LANFIW     L G +K  ++ KVILP T+LRR EC LEPTR A  E++ +  
Sbjct: 2   NGETHSQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQAALEEFQSLK 61

Query: 64  GSNI--DLESFVKVAGYSFYNTSEYSLSTLG---------STNTRNNLESYIASFSDNAK 112
                       ++ G+ FYN S   L+  G           N   NL SYI  FS N +
Sbjct: 62  TKPERVQQARLQQITGHRFYNLSRMQLTLPGEKIHSLLDDPNNLAPNLNSYINGFSANVR 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           AI E F FS  IA + +  +L+++ K F+GI+L P  V    M  ++E LIR    + +E
Sbjct: 122 AIMEKFKFSEQIAHMAEKNILFEVIKAFAGIDLSPQRVDQMQMGYVFEELIRIGAEQSNE 181

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LLL P+  L K    +++T+YDP CGTGG L+ A  ++    S
Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEQDLAKS--HVVKTIYDPACGTGGMLSVAEEYIRHLNS 239

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K        GQ+   E  AVC + MLI+  +++         + G     D      F
Sbjct: 240 EAKPK----VFGQDWNDEAWAVCKSDMLIKGEDANNIILGDSFTRDGFDRDSDGNKW-TF 294

Query: 293 HYCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            Y L+NPPFG +W++ +  +++E    G  GRFG G P+I+DG++LFL H+  K+     
Sbjct: 295 DYMLANPPFGVEWKQQQKTIQQEADTLGYAGRFGAGTPRINDGALLFLQHMIAKMRPVDK 354

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R AIV + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T IATY+W+++
Sbjct: 355 DGSRIAIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIATYIWVIT 414

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIND----------DQRRQILDIYVSRE 460
           NRK +ER+GK+QLI+A + W  +    G KRR I D          D    I  +Y +  
Sbjct: 415 NRKAKERKGKIQLIDARNFWVQMEKSLGNKRRRIGDPNDPNHPRDPDYIADITRVYENFT 474

Query: 461 NGK----------------------------------FSRMLDYRTFGYRRIKVLRPLRM 486
           +G+                                   S++ D   FGY +I V RPLR+
Sbjct: 475 DGESRWVVFDKDSKVLGVNGLEPTVDDSNGQKKKYLVVSKLFDNEDFGYHKITVERPLRL 534

Query: 487 SFILDKTGLARLEADITWRKLSPLH-----------------QSFWLDILKPMMQQIYPY 529
           +F      +ARLE    ++ L+                    Q    D+L     Q    
Sbjct: 535 NFQATAERIARLEEQTAFKNLATSSKKNEIVRQQEIETGKARQQAIRDLLAAFADQHGDT 594

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
            + +            +   VK S   + A +   G +D  A    D  G   PDT+L +
Sbjct: 595 LFKDRKQFLLALREIDRARGVKLSAPELKAVLAVLGERDETASICRDKQGNPEPDTDLRD 654

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E VP  E +++YF REV PHVPDA+ID            +VGYEI  NR FY+Y+P R+
Sbjct: 655 TETVPLKEGVEEYFRREVLPHVPDAWIDH--------SKTKVGYEIPLNRHFYRYEPPRE 706

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L +I+AE+K +E +I  LL E+  
Sbjct: 707 LAEIEAEIKVLEGEILDLLREVTA 730


>gi|308171853|ref|YP_003915183.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307743225|emb|CBQ74048.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 653

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 260/675 (38%), Positives = 371/675 (54%), Gaps = 33/675 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +  A FIW  A+ L G+FK   +G  ILPFT+LRRL+  L  T+S V E         + 
Sbjct: 2   SKHATFIWGIADLLRGNFKAHQYGDFILPFTVLRRLDSVLADTKSKVLEVVAEADAKGLS 61

Query: 69  LESFVKVAG----YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           +   +        +SFYNTS+Y L TL   + N R NL SYI +FS+N + IF  +    
Sbjct: 62  VRPVLLKTKAGHQHSFYNTSQYDLGTLIGDAENLRENLLSYINAFSENVRDIFVKYKIED 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I  LE+  LL  + + F+ ++LHP  V +  M +I+E LIR+F    +E A +  TPR+
Sbjct: 122 RIEELEENNLLLLVIQRFAEVDLHPKHVSNDKMGHIFEELIRKFAEASNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL + DD   ++   ++R++YDPT GTGG L+ A +H+       +    L  
Sbjct: 182 VIELMVDLLFENDDEALRDE-DIVRSVYDPTAGTGGMLSVAEDHLTAMNPRAR----LTL 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL P+++A+C A M+I+    D             TL  D   G  F+YCLSNPPFG
Sbjct: 237 AGQELNPQSYAICKADMVIKGQSVDAIV-------NDDTLRHDGHAGTTFNYCLSNPPFG 289

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--GGRAAIV 359
             W+K + AV +EH + G  GRFGPGLP++SDGSMLFL+HL +K+  P +G  GGRAAIV
Sbjct: 290 VDWKKQEKAVREEHAEKGFAGRFGPGLPRVSDGSMLFLLHLISKMREPAHGSAGGRAAIV 349

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGES IR+W+LE D +EAI+ALPTD+F+ T I+TY+W+LS  K+ ERR
Sbjct: 350 LNGSPLFTGGAGSGESNIRKWILERDYLEAIIALPTDMFYNTGISTYIWVLSKEKSPERR 409

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
            KVQL++ + L+  +R   G KR  +  +  + I+ +Y        S++ +   F YR I
Sbjct: 410 NKVQLVDGSKLFRKMRKGLGSKRNELGPEDIQAIVRLYGDFTETDQSKIFNTTDFFYRTI 469

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            V RPL+++F    T   R++  +  + L  L      D+   +        W       
Sbjct: 470 TVERPLKLNF---ATTTERIDTALAAKPLGKLTADAVADLRTALDSMDATVLWKNRDNFT 526

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
           +      K   V+ S   + A I    ++D  AD  T    +  PD  L + ENVP+ E 
Sbjct: 527 TGLKRTLKATGVELSTPQLKALIAGLSKRDDTADVCTGPKSKIEPDAELRDTENVPWNED 586

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  Y  RE+ P VPDA++D+        E  + G EI F R FYQY P R L++IDA+L 
Sbjct: 587 IHAYIEREIKPFVPDAWLDE--------EKTKEGCEIPFTRHFYQYIPPRPLEEIDADLD 638

Query: 659 GVEAQIATLLEEMAT 673
            V  +I   LE++  
Sbjct: 639 AVLGRIRARLEQVKA 653


>gi|167917952|ref|ZP_02505043.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei BCC215]
          Length = 613

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 268/672 (39%), Positives = 377/672 (56%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LEPT++AV  ++ A   + 
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEPTKAAVLAEFEAKTKAG 61

Query: 67  IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++ E F+  KV    FYNTS   L  L     + R NL  Y+  FS +A+ IFE FDF +
Sbjct: 62  LNSEPFLLRKVGDAKFYNTSPLDLVKLLGDQDHIRQNLYDYLRGFSPSARDIFERFDFHT 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I RL KA LLY + + F  I+LHP TV +  M  ++E LIR+F    +E A +  TPR+
Sbjct: 122 QIERLAKANLLYLVTEKFVNIDLHPSTVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +      ++RT+YDPT GTGG L+ A  ++ +     +    L  
Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEYLLEHNPAAR----LTM 237

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL  E++A+C A MLI+  +         NI  G+TLS D   G++F Y LSNPPFG
Sbjct: 238 FGQELNDESYAICKADMLIKGQD-------VANIVAGNTLSDDGHAGRKFDYMLSNPPFG 290

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K + AV +EH+  G  GRFGPGLP++SDGSMLFL+HL +K+    +GG R  IVL+
Sbjct: 291 VEWKKVEKAVRQEHEQKGFSGRFGPGLPRVSDGSMLFLLHLVSKMRPAHDGGSRFGIVLN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K + R+G 
Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPQHRKGY 410

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+A+  W  +R   G KR+ ++D+    I  ++      + + + D       R  V
Sbjct: 411 VQLIDASSFWQKMRKSLGSKRKELSDEHIDTITRLFGDFIEAELATVFDAEGKEVSRWVV 470

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                        G           KL+P+ + F          +   +G+    V+  +
Sbjct: 471 P----------AGGNPPEAPFGGKAKLAPISRVF----------KNEDFGYTTITVERPL 510

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           +  + + +     K                        G+   D+ L + ENVP  E I 
Sbjct: 511 RDEQGQVVLGAKGKQ----------------------KGKPQADSALRDTENVPLSEDIG 548

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF +EV PH PDA+ID+        E  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 549 AYFDQEVLPHAPDAWIDE--------EKSKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600

Query: 661 EAQIATLLEEMA 672
            A I  +LEE+A
Sbjct: 601 SANIMKMLEELA 612


>gi|256375105|ref|YP_003098765.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919408|gb|ACU34919.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 670

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 272/693 (39%), Positives = 393/693 (56%), Gaps = 49/693 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +     LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L PT+  V E    F 
Sbjct: 2   NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLTPTKDKVLETAERFA 61

Query: 64  GSNIDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              +D + F+ K +G+SFYNTS Y+L  +   +T+    L  Y+ +FS NA+ + E ++F
Sbjct: 62  DREMDPDRFLRKASGHSFYNTSTYTLKAIAGDATHAAKYLNEYLGAFSPNAREVLERYEF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + +L+ A LLY++   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TP
Sbjct: 122 AQQVKKLDAADLLYQVLGRFADLDLRPEVVTNHQMGYIFEELIRRFAEQSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL+ PD  +    PG +RT+ DP CGTGG L+ A   +            +
Sbjct: 182 REVIDLMVKLLIAPDSDVLSV-PGAVRTVLDPACGTGGMLSAAEEEITKHNKD----ATV 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE+ A+C + M+I+  + +       NI+ G++ S D      F Y L+NPP
Sbjct: 237 KVFGQELNPESWAICRSDMMIKGQDPE-------NIKFGNSFSDDSHAHATFDYVLANPP 289

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLE---LPPNGGGRA 356
           FG  W+K ++ VE+EHK  GE GRFG GLP+I+DGS+LFL H+ +K++   +   GG R 
Sbjct: 290 FGVDWKKVQETVEREHKMLGESGRFGAGLPRINDGSLLFLQHMISKMKPVDVDGKGGSRV 349

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV + SPLF G A SGES+IRRW+LEND +E IVALP  LF+ T I TY WI+SNRK++
Sbjct: 350 AIVFNGSPLFTGAADSGESKIRRWILENDWLEGIVALPDQLFYNTGIFTYFWIVSNRKSK 409

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVS----------------R 459
            R+GKV L++A D W  +R   G KR++IN+ Q  +I  +Y                  R
Sbjct: 410 GRQGKVVLLDARDYWQKMRKSLGDKRKMINEQQISEITRLYTEALAILDAEKNDQMHDLR 469

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             G+  ++     FGYRRI V RPL++ F + +  L  L A    +K +      +   L
Sbjct: 470 NKGRKIKLFRNEDFGYRRITVERPLKLRFKVTEETLFALRAAKPVQKTTDAE--MFTAAL 527

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           +P++ + +          +   +  A  L       F     +A G +DP  + V  + G
Sbjct: 528 RPLIGKSWLKKTEAWLDMKD--AIVAAGLLWPTGVPFAKVLRDAVGVRDPEGE-VQKIKG 584

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
           E  PD+ L +YENVP  E + +Y  REV PH PDA+ID+           ++GYEI F R
Sbjct: 585 EPEPDSELRDYENVPLDEDVDEYLRREVLPHAPDAWIDRTK--------TKIGYEIPFTR 636

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            FY+YQP R L +IDAELK +EA+I  LL ++ 
Sbjct: 637 HFYEYQPPRPLPEIDAELKSLEAEIKLLLHKVT 669


>gi|251791802|ref|YP_003006523.1| N-6 DNA methylase [Dickeya zeae Ech1591]
 gi|247540423|gb|ACT09044.1| N-6 DNA methylase [Dickeya zeae Ech1591]
          Length = 708

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 258/722 (35%), Positives = 375/722 (51%), Gaps = 67/722 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   LANFIW     L G +K  ++ KVILP T+LRR EC LEPTR     ++    
Sbjct: 2   NGETHRQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQDALAEFQWLK 61

Query: 64  GSNI--DLESFVKVAGYSFYNTSEYSLSTLG---------STNTRNNLESYIASFSDNAK 112
                       ++ GY FYN S   L+  G           N   NL SYI  FS N +
Sbjct: 62  TKPERVQQARLQQITGYRFYNLSRMQLTLSGENIHSLLDDPNNLAPNLNSYINGFSANVR 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           AI E F FS  I  + +  +L+++ K F+ I+L P  V    M  ++E LIR    + +E
Sbjct: 122 AIMERFKFSEQITHMAEKNILFEVVKAFAKIDLSPQRVDQMQMGYVFEELIRIGAEQSNE 181

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LLL P++ L K    +++T+YDP CGTGG L+ A  ++    S
Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEEDLAKSD--VVKTIYDPACGTGGMLSVAEEYIRHLNS 239

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +       +GQ+   E  AVC + MLI+  ++D         + G     D      F
Sbjct: 240 DARP----HLYGQDWNDEAWAVCKSDMLIKGEDADNIILGDTFTRDGFDRDSDGNKWI-F 294

Query: 293 HYCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            Y L+NPPFG +W++ +  ++KE  + G  GRFG G P+I+DG++LFL H+ +K+     
Sbjct: 295 DYMLANPPFGVEWKQQQKYIQKEADELGYAGRFGAGTPRINDGALLFLQHMISKMRPVNK 354

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T IATY+W+++
Sbjct: 355 DGSRIGIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIATYIWVIT 414

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIND--------DQRRQILDIYVSRENG 462
           NRK +ER+GKVQLI+A + W  +    G KRR I D        +   +I  IY + ++G
Sbjct: 415 NRKAKERKGKVQLIDARNFWVPMEKSLGNKRRRIGDPQDRPKDPNHIAEITRIYENFQDG 474

Query: 463 K--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           +               S++ D   FGY +I V RPLR++F      +ARLE    ++ L+
Sbjct: 475 ETRTFFLDGKEKELVVSKLFDNDDFGYHKITVERPLRLNFQATAERIARLEEQTAFKNLA 534

Query: 509 PLH-----------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
             +                 Q    ++L     Q     + +  +         +   +K
Sbjct: 535 SSNKKNETVRQQEIEAGRARQQEIRNLLADFADQHGDTLYKDRKLFLLALREVDRARNIK 594

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHV 611
            S + + A I A G +D  A+   D  GE   DT+L + E VP  ESI++YF REV  HV
Sbjct: 595 LSAAELKAVIAALGERDETAEICKDKKGEPEADTDLRDTETVPLKESIEEYFQREVLLHV 654

Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           PDA+ID            ++GYEI  NR FY+Y+  R+L +I+AE+KG+E++I  LL+E+
Sbjct: 655 PDAWIDYAK--------TKIGYEIPLNRHFYRYEEPRELTEIEAEIKGLESEILELLKEV 706

Query: 672 AT 673
             
Sbjct: 707 TA 708


>gi|148360830|ref|YP_001252037.1| putative type I restriction enzyme M protein [Legionella
           pneumophila str. Corby]
 gi|148282603|gb|ABQ56691.1| Putative type I restriction enzyme HindVIIP M protein [Legionella
           pneumophila str. Corby]
          Length = 676

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 281/689 (40%), Positives = 395/689 (57%), Gaps = 34/689 (4%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E      +L+ F W  AE L GDFK +++GKVILPF +LRRL+C LEP++ AV   Y   
Sbjct: 4   ENNKKIQNLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILEPSKDAVISAYENL 63

Query: 63  ----GGSNIDLESFVKVAG-YSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAI 114
                    D+  F  V G    YN +  + S +      +   NL  YI SF+ + + I
Sbjct: 64  PEGIDDHTKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDVHKNLLDYITSFNSSVRDI 123

Query: 115 F-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           F E F F+  + RL+  G+L+++   F  I+LHPD V +  M  ++E LIRRF    +E 
Sbjct: 124 FLEKFLFTDQLKRLKDGGILWQVFDRFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNET 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +  TPR+V+ L   LLL   DA      G+IRT+YDP CGTGG L      + +  S 
Sbjct: 184 AGEHFTPREVIRLIVDLLLIN-DAEALAGSGIIRTVYDPACGTGGMLALMEEAMKEYNSK 242

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            ++      +GQEL PE+  +C + ML+     +           G+TL++D    K+FH
Sbjct: 243 IRVE----LYGQELNPESFGICTSDMLVTGHNPEQIAF-------GNTLTEDAHKDKKFH 291

Query: 294 YCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y LSNPP+G  W+K +D +++E  + G  GRFG GLP+ISDG +LFL H+ +K+      
Sbjct: 292 YMLSNPPYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMR-DDEV 350

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV++ SPLF G AGSGESEIRRW+ END +EAI+ALPTDLF+ T I TY+W+L+N
Sbjct: 351 GSRIGIVMNGSPLFTGGAGSGESEIRRWMFENDWVEAIIALPTDLFYNTGIQTYVWMLTN 410

Query: 413 RKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG-----KF 464
           +K + RRGKVQLI+A+    W S+R   G KRR I+D  R +I+ IY    NG     +F
Sbjct: 411 KKDKNRRGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSEF 470

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S++ D + FGYR I++ RPLR++F   K  L  L+ + T+ KLS + Q   L  L     
Sbjct: 471 SKIFDRQEFGYREIRIERPLRLNFEGSKERLELLQQENTFLKLSEIEQQELLTALNHNTL 530

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
           +   +   ++F K        K L  K +     A +     KD  AD   D  G   PD
Sbjct: 531 K-QQFKNRDAFEKAL--KTALKNLSFKLTAPLKKAILTTLSEKDETADICCDAKGNPEPD 587

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L ++E VP  E  ++Y  REV P V DA++D+   D  D ++GRVGYEINFNR+FY+Y
Sbjct: 588 TDLRDHELVPLKEDWREYVEREVKPFVADAWVDENHKDATDGKVGRVGYEINFNRYFYKY 647

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            P R + +I+ ELK +EA+IA LL+E+  
Sbjct: 648 VPPRPVAEINEELKQLEAEIANLLKEVVA 676


>gi|289706814|ref|ZP_06503157.1| N-6 DNA Methylase [Micrococcus luteus SK58]
 gi|289556499|gb|EFD49847.1| N-6 DNA Methylase [Micrococcus luteus SK58]
          Length = 653

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 261/675 (38%), Positives = 376/675 (55%), Gaps = 36/675 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S  +L+NF+W  A+ L G FK   +G ++LP T+LRR+E  ++P R     +  A G  +
Sbjct: 3   SPQNLSNFVWGIADQLRGVFKPNQYGTLVLPLTILRRMEAVMDPHRGFF-AELAAKGHPD 61

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             L++ V+   G +FYN S ++L  +       R NL +Y+  FS N   +F  ++F  T
Sbjct: 62  FVLDNLVQSRTGLTFYNLSPFTLDRILQEPDLLRTNLLAYVDGFSQNVADLFTYYEFDKT 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +A+L++   L+ + + F+ I+L PD V +  M  ++E LIRRF +  +E A +  TPRD 
Sbjct: 122 VAKLDEHDRLFLVLQQFASIDLSPDAVSNAEMGTLFEDLIRRFAAASNETAGEHFTPRDA 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   LL   DD +    P  +RT+YDPT GTGG L+     +     + ++       
Sbjct: 182 VKLLVDLLTANDDDVLTGYP--VRTVYDPTAGTGGMLSLLDERLRRMNPNAEV----RLF 235

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  +++A+C + +L +  ++D        I +G TL  D    +RF Y LSNPP+G 
Sbjct: 236 GQELNDQSYAICKSELLGKGQDAD-------GIARGDTLKNDAHLTERFDYVLSNPPYGG 288

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W+  + AVEKE    G   RF  G P ISDG MLFL  +A+KL     GGGRA IVL+ 
Sbjct: 289 DWKASRTAVEKEIAVGGATNRFPGGTPAISDGQMLFLQLVASKLRPVSEGGGRAGIVLNG 348

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSG SEIRRWLLE+DL++ IVALPTD+F+ T IATY+W+L N K  +RRG+V
Sbjct: 349 SPLFTGGAGSGPSEIRRWLLESDLVDVIVALPTDMFYNTGIATYVWVLDNNKPADRRGRV 408

Query: 423 QLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRMLDYRTFGYR 476
           QLI+A   +T + RN G K + ++   R+++LDIY        +N +FS++L  + FGYR
Sbjct: 409 QLIDARTFFTKLRRNVGSKNKELSTADRQRVLDIYRDFDAQSEDNAEFSKVLTAQDFGYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            I V RPL++ F +    +A   A     KL    +S     L  +  ++    W     
Sbjct: 469 EITVERPLQLRFEVGDATIAAAFATKPVDKLPDDGRSALETALASLRGRV----WDHQPT 524

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
                    K   V A    + A   A G  DP A+   +  GE  PDT+L + E VP+ 
Sbjct: 525 FVLELKKALKEHGVTAGAPLVKALAGAIGVHDPEAEVAKNKKGEPEPDTSLRDTELVPFG 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             I +YF  EV+PHVP A+ID+           ++GYEI F R FY+Y P R L++IDAE
Sbjct: 585 RDIHEYFEAEVAPHVPGAWIDE--------SKTKIGYEIPFTRLFYKYVPPRPLEEIDAE 636

Query: 657 LKGVEAQIATLLEEM 671
           LK + A+I  LL+E+
Sbjct: 637 LKQLTAEIIELLQEV 651


>gi|256825200|ref|YP_003149160.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
 gi|256688593|gb|ACV06395.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
          Length = 663

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/668 (37%), Positives = 369/668 (55%), Gaps = 30/668 (4%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI--DLE 70
           NFIW  A+ L G ++  ++G VILPFT+L R E  LEPT+ AV      +  +      E
Sbjct: 19  NFIWGIADMLRGPYRPKEYGTVILPFTVLARFESVLEPTKDAVLAASEKYESAPDLVRHE 78

Query: 71  SFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
              + +G  FYN S+++LSTLG   N   NL++ I  +++  + +FE FD    I  L+ 
Sbjct: 79  MLKRASGQEFYNISQFTLSTLGDPANQAANLQNLIEGYNEEVRQVFERFDMPKIIRDLDD 138

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              L  + K F+ +++HPD V +  M +++E LIRRF     + A D+ TPR+VV L  +
Sbjct: 139 RDRLSAVVKEFAALDVHPDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRLMVS 198

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL  PD     + P +IR +YDPTCGTGG L++A   + +   H      L   GQE   
Sbjct: 199 LLFSPDTEDLSD-PHLIRQVYDPTCGTGGMLSEAHEWMREHNGH----ATLNLFGQEFNA 253

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            ++A+  A ++I++ ++       +NI  G TL  D   GK F YC+SNPPFG+ W+  +
Sbjct: 254 LSYAMAKADLIIKKQDA-------QNIFFGDTLLVDGHEGKTFSYCISNPPFGQDWKVQE 306

Query: 310 DAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            AV+ E  ++G+ GRF  GLP ++DG+MLFL HL +K+     GGGR AIVL+ S LF G
Sbjct: 307 KAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVLNGSALFTG 366

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AG G SEIRR LLENDL++AI+ LPTDLF+ T IATY+W+L N K +ERRGKVQLI+ T
Sbjct: 367 SAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYIWVLDNNKPQERRGKVQLIDGT 426

Query: 429 DLWTSIRNEG-KKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLR 485
             W  +R     KRR++++     I+D+Y   E  + + S++ +   FGYR I V +PLR
Sbjct: 427 AQWVKMRKSIGAKRRMLSEANITSIVDLYGEYEDADPEVSKVFNTEDFGYRTITVEQPLR 486

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             + +D+  +         +KL    +    + L  +  +     W E    +       
Sbjct: 487 QVYSVDEDRIEAALNLTPIKKLDKETRHLLREALDSLDHE---QVWTERGEFDKDLGTAL 543

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605
              +V  + +   A I AF    P+ + V    G   PD +L + ENVP  E +  Y  R
Sbjct: 544 GAHRVGLTPANRRAVIGAFAESSPQGEIVKGPKGRIEPDASLRDTENVPLTEDVDAYVER 603

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P  P+A++D+           ++GYEI F R FY Y+P R L +IDA+++   A++ 
Sbjct: 604 EVLPWAPEAWVDE--------SKTKIGYEIPFTRAFYVYEPPRPLAEIDADVQAAIARVQ 655

Query: 666 TLLEEMAT 673
            L  E+ +
Sbjct: 656 GLFAEVRS 663


>gi|126462619|ref|YP_001043733.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104283|gb|ABN76961.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 611

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/672 (38%), Positives = 365/672 (54%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L+ F+W  A+ L GD+K +D+GKVILPFT+LRR++C L PT+ AV  +Y       
Sbjct: 2   NQQDLSAFLWSVADLLRGDYKQSDYGKVILPFTVLRRIDCVLAPTKEAVLAEYKIRKEQG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +    F+ K +G +FYN S + L  L     N   NL +YI  FS   + IF+ F+F + 
Sbjct: 62  MPPAPFLRKASGQTFYNASRFDLGKLMGDQDNIALNLRAYIQGFSPEVRDIFDHFEFDTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY + + F+   LHPD V +  M  ++E LIRRF    +E A +  TPR+V
Sbjct: 122 IDRLAKAGLLYLVTEKFAKAPLHPDRVTNHQMGLVFEELIRRFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA+  + PG++RT+YDPT GTGG L+ A  ++ D          +   
Sbjct: 182 IRLMVNLIFVEDDAVLSK-PGVVRTIYDPTAGTGGMLSVAEEYLTDMNP----AASVALS 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         NI  G+TLS D   G+ F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQD-------VGNIAFGNTLSDDFHPGETFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V  EH+  G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVL+ 
Sbjct: 290 EWKKVEKVVRAEHEQKGHAGRFGPGLPRVSDGSLLFLMHLLSKMRPAAQGGCRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR +LE+DL+EAIVALPTD+F+ T IATY+WIL+NRK E R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRHVLESDLVEAIVALPTDMFYNTGIATYVWILTNRKAEARKGKV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+ +  W  +R   G KR+ + D     I  ++        +R+ D        + V 
Sbjct: 410 QLIDGSSFWQKMRKSLGSKRKQMGDADIATITRLFGGFIEADLARVFDAAGKEVGTVVV- 468

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                              +    KL+PL +          ++    +G+    V+  ++
Sbjct: 469 ---------TPGEAPPTPPEGGRVKLAPLSR----------IRPNESFGYRTITVERPLR 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
             + + +  +  K                      + G+  PD  L + ENVP  E +  
Sbjct: 510 DEQGRVVLGQKGK----------------------LKGKPQPDPALRDTENVPLTEDVAA 547

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA I        D E  +VGYEI FNR FY ++P R L  IDA+L  V 
Sbjct: 548 YFAREVLPHAPDACI--------DPEKTKVGYEIPFNRHFYVFEPPRPLAQIDADLAEVT 599

Query: 662 AQIATLLEEMAT 673
            +I  +L  ++ 
Sbjct: 600 TRIQAMLAGLSA 611


>gi|296106106|ref|YP_003617806.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648007|gb|ADG23854.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 676

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/689 (40%), Positives = 394/689 (57%), Gaps = 34/689 (4%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E      +L+ F W  AE L GDFK +++GKVILPF +LRRL+C LE ++ AV + Y   
Sbjct: 4   ENNKKIQNLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILETSKDAVVKAYENL 63

Query: 63  ----GGSNIDLESFVKVAG-YSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAI 114
                    D+  F  V G    YN +  + S +      +   NL  YI SF+ + + I
Sbjct: 64  PEGIDDHTKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDIHKNLLDYITSFNSSVRDI 123

Query: 115 F-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           F E F F+  + RL+  G+L+++   F  I+LHPD V +  M  ++E LIRRF    +E 
Sbjct: 124 FLEKFLFTDQLKRLKDGGILWQVFDLFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNET 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +  TPR+V+ L   LLL  D        G+IRT+YDP CGTGG L      + +  S 
Sbjct: 184 AGEHFTPREVIRLIVDLLLINDADAL-AGSGIIRTVYDPACGTGGMLALMEEAMKEYNSK 242

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            ++      +GQEL PE+  +C + ML+     +           G+TL++D    K+FH
Sbjct: 243 IRVE----LYGQELNPESFGICTSDMLVTGHNPEQIAF-------GNTLTEDAHKDKKFH 291

Query: 294 YCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y LSNPP+G  W+K +D +++E  + G  GRFG GLP+ISDG +LFL H+ +K+      
Sbjct: 292 YMLSNPPYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMR-DDEV 350

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV++ SPLF G AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+L+N
Sbjct: 351 GSRIGIVMNGSPLFTGGAGSGESEIRRWMLENDWVEAIIALPTDLFYNTGIQTYVWMLTN 410

Query: 413 RKTEERRGKVQLINAT--DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG-----KF 464
           +K + RRGKVQLI+A+    W S+R   G KRR I+D  R +I+ IY    NG     +F
Sbjct: 411 KKDKNRRGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSEF 470

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S++ D + FGYR I++ RPLR++F   K  L  L+ + T+ KLS + Q   L  L     
Sbjct: 471 SKIFDRQEFGYREIRIERPLRLNFEGSKERLELLQQEKTFLKLSEIEQQELLTALNHNTL 530

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
           +   +   ++F K          L  K +     A +     KD  AD   D  G   PD
Sbjct: 531 K-QQFKNRDAFEKTL--KTTLNNLSFKLTAPLKKAILTTLSEKDETADVCCDAKGNPEPD 587

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L ++E VP  E  ++Y  REV P V +A++D+   D  D ++GRVGYEINFNR+FY+Y
Sbjct: 588 TDLRDHELVPLKEDWREYVEREVKPFVANAWVDENHKDATDGKVGRVGYEINFNRYFYRY 647

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            P R + +ID ELK +E++IA LL+E+  
Sbjct: 648 VPPRPVAEIDEELKQLESEIANLLKEVIA 676


>gi|332800155|ref|YP_004461654.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
 gi|332697890|gb|AEE92347.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
          Length = 672

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 268/702 (38%), Positives = 384/702 (54%), Gaps = 58/702 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT F        NFIW  AE L G +K   +G VILP  +LRR +C L  T+  V + Y 
Sbjct: 1   MTNFQDK----VNFIWTIAELLRGPYKKEQYGDVILPMAVLRRFDCVLAETKEEVLKAYE 56

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
           A   + +        K++   F NTS+Y    L     N  +NL +Y+  FS NA+ I E
Sbjct: 57  ALKETGLQNMDPVLNKISKQKFNNTSKYDFEKLLADPDNIASNLRNYVNGFSKNAREIIE 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            FDF   I +L    LLY I   F+ I+LHPD V +  M  I+E LIRRF       A D
Sbjct: 117 YFDFDKQITKLNDNNLLYLIVSEFNKIDLHPDAVSNMEMGYIFEELIRRFSEHA--EAGD 174

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   +LL+ D      +PG++ T+YD   GTGG L+    ++ +     ++
Sbjct: 175 HYTPREVIRLMVNILLNEDKESLT-TPGLVVTVYDCCAGTGGMLSVTEQYLKELNPGIQV 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQE+ P+++++C + MLI+  ++D       NI  G + ++D   GK F Y L
Sbjct: 234 E----LFGQEINPQSYSICKSDMLIKGQDAD-------NIILGDSFTEDGHKGKTFRYML 282

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPFG +W+K +  + +E+ K G  GRFG GLP+ISDGS+LFL HL +K++     G R
Sbjct: 283 TNPPFGVEWKKAEKFIREEYEKEGFDGRFGAGLPRISDGSLLFLQHLISKMKQD-EKGSR 341

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+ + SPLF G AGSGESEIRRW++END++E I+ALP  LF+ T I+TY+WI++NRK 
Sbjct: 342 IAIIFNGSPLFTGDAGSGESEIRRWIIENDMLEGIIALPDQLFYNTGISTYIWIVTNRKN 401

Query: 416 EE------RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            +      R GK+QL+NA D +  +R   G KR  I+++Q  +I  IY   +  ++ ++ 
Sbjct: 402 NDLMKGPARAGKIQLVNAVDFYQKMRKSLGNKRNEISEEQIEEITRIYGEFKENEYCKIF 461

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH----------------Q 512
           D   FGYR+I V RPLR++F + +  +  L  +  ++KL+                   Q
Sbjct: 462 DNEDFGYRKIVVERPLRLNFQVTEERINNLYNERAFQKLAESKKKGTAGLREIEEGKKLQ 521

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              + +LK M   I  Y   E F KE  K+   K   VK   + + A I+A   KD  AD
Sbjct: 522 QQIIAVLKTMNSDIM-YKNREVFTKELKKA--FKHSDVKLDNALLKAIISALSEKDETAD 578

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
              D  G   PD +L + ENVP  E I DYF REV PHVPDA+ID+           ++G
Sbjct: 579 ICLDAKGNPEPDPDLRDTENVPLKEDIHDYFEREVKPHVPDAWIDE--------SKTKIG 630

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           YEI F R FY+Y+P R  ++I  E+K +E  I   L+++  E
Sbjct: 631 YEIPFTRHFYKYEPLRPSEEILEEIKQLEKSIQQKLQKVIGE 672


>gi|167718507|ref|ZP_02401743.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei DM98]
          Length = 613

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 266/672 (39%), Positives = 379/672 (56%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV  ++ A     
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKG 61

Query: 67  IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++ E F+   V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF +
Sbjct: 62  LNPEPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYT 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + RL KA LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+
Sbjct: 122 QVERLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +      ++R +YDPT GTGG L+ A   + +     +    L  
Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVAR----LRM 237

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL  E++A+C A MLI+  + +       NI  G+TLS D   G++F Y LSNPPFG
Sbjct: 238 YGQELNDESYAICKADMLIKGQDVE-------NIVAGNTLSDDGHAGRQFDYMLSNPPFG 290

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K +  V  E++  G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+
Sbjct: 291 VEWKKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G 
Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGF 410

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+A+  W  +R   G KRR ++D+    +  ++ +    + + + D       R  V
Sbjct: 411 VQLIDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVV 470

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 S + D     ++       K  P+ + F          +   +G+    V+ ++
Sbjct: 471 PA---GSNVPDVPAGGKV-------KSVPISRIF----------RNQEFGYTTITVERAL 510

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           +  + K +                G K  +        G+   D++L + ENVP  + I 
Sbjct: 511 RDEQGKVV---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIG 548

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF REV PH PDA+ID+        +  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 549 VYFEREVLPHAPDAWIDE--------QKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600

Query: 661 EAQIATLLEEMA 672
            A I  +LEE+A
Sbjct: 601 SANIMRMLEELA 612


>gi|296330134|ref|ZP_06872616.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673378|ref|YP_003865050.1| Type I restriction-modification system methyltransferase subunit
           (HsdM) [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152723|gb|EFG93590.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411622|gb|ADM36741.1| Type I restriction-modification system methyltransferase subunit
           (HsdM) [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 670

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 263/690 (38%), Positives = 380/690 (55%), Gaps = 49/690 (7%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +     +FIW  AE L G +K  D+GK+ILP  +LRR +C LE T+  V  K   F    
Sbjct: 3   NFQDKVSFIWSIAEILRGPYKPEDYGKIILPLAVLRRFDCVLESTKEEVLAKAEQFATMK 62

Query: 67  IDLES--FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            D       +V+  +F+NTS+Y  + L   S N  +NL  YI  FS  A+ I + FDF  
Sbjct: 63  EDAREQILNRVSKQNFHNTSKYDFNKLLTDSDNIADNLRDYINGFSKVARDIMDHFDFDR 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +LE+  LLY   K FS I+LHP+TV +  M  ++E LIRRF       A D  TPR+
Sbjct: 123 QIDKLEQNNLLYLTIKRFSEIDLHPETVSNIEMGYVFEELIRRFNENA--EAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L T LL   DDA     PG+ +TLYD   GTGG  + A  ++        +      
Sbjct: 181 VIRLMTHLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLLSQNPTAHLE----F 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PE++A+C A +LI+  ++       +NI+ G+TLSKD F   +F Y +SNPP+G
Sbjct: 237 FGQEINPESYAICKADLLIKGEDA-------RNIRLGNTLSKDQFPRDKFDYLISNPPYG 289

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  +++EH K G  GRFGPG P+ SDG +LFLMHL +K++        G R AI
Sbjct: 290 VDWKSYEKPIKEEHEKQGFNGRFGPGTPRTSDGQLLFLMHLLSKMKPVTAENPQGSRLAI 349

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIR++LLENDL+E IVALP DLF+ T IATY+WIL+N K    
Sbjct: 350 IMNGSPLFTGDAGSGESEIRKYLLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLH 409

Query: 419 RGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKV+L+NA D      ++ G KR  I ++Q  +I+ +Y   +  ++ ++ D   FGY +
Sbjct: 410 KGKVRLVNAVDFSKKMKKSMGSKRNEITEEQINEIVRLYGDAQPNEYVKIFDNEDFGYAK 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH----------------QSFWLDILKP 521
           I V RPLR++F +++  LAR+     +  L+                   Q+  L +L+ 
Sbjct: 470 ITVERPLRLNFQVNEERLARVAEGKGFANLATSKKKGDAGHFEIEEGKKLQTQILYVLRT 529

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           +  +   Y   + F K  +  +  K   +      + A +     KD  AD       + 
Sbjct: 530 LESETV-YKNRDEFTK--VLKDALKQAGITIGAPVLKAILAGLSEKDETADICMKNKTDI 586

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            PDT+L + ENVP  E+I DYF REV PHVPDA+ID+           ++GYEI F R F
Sbjct: 587 EPDTDLRDTENVPLKENIHDYFAREVLPHVPDAWIDETK--------TKIGYEIPFTRQF 638

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           Y+Y   R   +I  E++ +EA+I   L+++
Sbjct: 639 YKYTALRSSTEIMDEIRALEAEIVEQLKKV 668


>gi|53718591|ref|YP_107577.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei K96243]
 gi|52209005|emb|CAH34944.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei K96243]
          Length = 613

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 262/672 (38%), Positives = 374/672 (55%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV  ++ A     
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKG 61

Query: 67  IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++ E F+   V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF +
Sbjct: 62  LNPEPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYT 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + RL KA LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+
Sbjct: 122 QVERLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +      ++R +YDPT GTGG L+ A   + +     +    L  
Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVAR----LRM 237

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL  E++A+C A MLI+  + +       NI  G+TLS D   G++F Y LSNPPFG
Sbjct: 238 YGQELNDESYAICKADMLIKGQDVE-------NIVAGNTLSDDGHAGRQFDYMLSNPPFG 290

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K +  V  E++  G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+
Sbjct: 291 VEWKKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G 
Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGF 410

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+A+  W  +R   G KRR ++D+    +  ++ +    + + + D       R  V
Sbjct: 411 VQLIDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVV 470

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +  +     +  +     +R                       +G+    V+ ++
Sbjct: 471 PAGSNVPNVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERAL 510

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           +  + K +                G K  +        G+   D++L + ENVP  + I 
Sbjct: 511 RDEQGKVV---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIG 548

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF REV PH PDA+ID+        +  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 549 VYFEREVLPHAPDAWIDE--------QKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600

Query: 661 EAQIATLLEEMA 672
            A I  +LEE+A
Sbjct: 601 SANIMRMLEELA 612


>gi|288553770|ref|YP_003425705.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification
           system [Bacillus pseudofirmus OF4]
 gi|288544930|gb|ADC48813.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification
           system [Bacillus pseudofirmus OF4]
          Length = 670

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 263/689 (38%), Positives = 375/689 (54%), Gaps = 43/689 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +     +FIW  AE L G +K  D+GKVILP  +LRR +C L+ T+  V      F   N
Sbjct: 3   NFQDKVSFIWSIAEILRGPYKPEDYGKVILPLAVLRRFDCVLDSTKEEVLASAEKFASMN 62

Query: 67  IDLES--FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            +       +VA  +F+NTS+Y  + L   S N  +NL  YI  FS  A+ I + FD   
Sbjct: 63  EEAREPILNRVAKQNFHNTSKYDFNKLLSDSDNIADNLRDYINGFSKTARDIMDHFDLER 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +LE   LLY   K FS I+LHP+ V +  M  I+E LIRRF       A D  TPR+
Sbjct: 123 QIDKLETNNLLYLTIKRFSEIDLHPEVVSNVEMGYIFEELIRRFNENA--EAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L T LL   DDA     PG+ +TLYD   GTGG  + A  ++A           L  
Sbjct: 181 VIRLMTHLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLASVN----FSAQLEF 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+  E++A+C A +LI+  ++       KNI+ G+TLS D F   +F Y +SNPP+G
Sbjct: 237 FGQEINGESYAICKADILIKGADA-------KNIRLGNTLSNDQFPYDKFDYLISNPPYG 289

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  +  EH K G  GRFGPG P+ SDG  LFL++L +K++        G R AI
Sbjct: 290 VDWKSYQKPIVDEHEKQGFNGRFGPGTPRTSDGQFLFLLNLLSKMKPVTAENPQGSRLAI 349

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIR+++LENDL+E IVALP DLF+ T IATY+WIL+N K   R
Sbjct: 350 IMNGSPLFTGDAGSGESEIRKYVLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLR 409

Query: 419 RGKVQLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKV+L+NA D +    ++ G KR  I ++Q   I+ +Y   + G++ ++ D   FGY +
Sbjct: 410 KGKVELVNAVDFYKKMKKSMGSKRNEITEEQINNIVSLYGDFQEGEYVKIFDNEDFGYAK 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-------------QSFWLDILKPMMQ 524
           I V RPLR++F +++  + ++  +  +  L+                +     I+K +  
Sbjct: 470 ITVERPLRLNFQVNEERIVKITEEKGFMNLATSKKKGEAGLKEIEAGKELQTQIIKVLRN 529

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 +        I  +  K  ++      + A +N    KD  ADP      E  PD
Sbjct: 530 LASDEIYKNREAFTKILKDAFKEAEITVGAPVLKAILNGLSEKDETADPCIKNKTEMEPD 589

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + ENVP  ESI DYF REV PHVPDA+ID+           ++GYEI F R FY+Y
Sbjct: 590 TDLRDTENVPLRESIHDYFEREVLPHVPDAWIDETK--------TKIGYEIPFTRQFYKY 641

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  R  Q+I  E++ +EA+IA  LE++  
Sbjct: 642 KALRGSQEIMEEIRVLEAEIAEQLEKVMG 670


>gi|114320943|ref|YP_742626.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227337|gb|ABI57136.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 725

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/737 (34%), Positives = 378/737 (51%), Gaps = 88/737 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV ++Y       +
Sbjct: 6   HDQLKSHIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKEAVLKQYEKLSAQGM 65

Query: 68  DLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
              +  K+ G        +  YNTS +    L   S N   NL +YI  FS  A+AIFE 
Sbjct: 66  PENAMEKLLGKAADPDRTHPLYNTSPFIFEKLLGDSENIAPNLVAYINGFSPTARAIFER 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F+  I +L+ +  L+ I K  S ++LHPD + +  M  ++EHL+ RF  + +E A D 
Sbjct: 126 FKFTDQIEKLDASNRLFTIVKAMSEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   +  ++   PG+ RT+YDP CGTGG L+++   + D  S     
Sbjct: 186 FTPREVIRLMANLVYTGEQDVYT--PGIYRTIYDPACGTGGMLSESEKFILDQNSQAN-- 241

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQE   E+ A+C + MLI+  ++     +      G   ++D F GK+FHY L+
Sbjct: 242 --LALFGQEYNDESWAICCSDMLIKDEDTS---SIVLGDTLGDGKTRDGFEGKQFHYLLA 296

Query: 298 NPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---- 352
           NPPFG +W+  K  VEKEHK  G  GRFG GLP I+DGS+LFL H+  K+     G    
Sbjct: 297 NPPFGVEWKDQKTVVEKEHKEMGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYKEGDDDS 356

Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+W+++
Sbjct: 357 VGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYVWLVT 416

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK------- 463
           NRK  ERRGKVQLI+ T  +  ++     KR  + +DQ R +  +Y +  +G+       
Sbjct: 417 NRKAPERRGKVQLIDGTRFFQRMKKSLNNKRNEVTEDQIRDLTRLYGNNRDGETAEVRIN 476

Query: 464 -------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ---- 512
                   SR+ + R FG+ ++ V RPLRM+F      +ARL+    +  L+   +    
Sbjct: 477 GDTETRVVSRIFENREFGFLKVTVERPLRMNFEASPERIARLDEQTAFANLATSKKRKNE 536

Query: 513 ----------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
                         + ++ ++  + P G + +  V E+  +  AK   +K       A  
Sbjct: 537 AAAAKEIAEGQKQQEAIRALLASLAPKGQYTDRAVFEADLNAAAKVASLKLPVPIKKAIF 596

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES----------------------- 598
           NA G +DP A+   D  G   PD+ L + EN+P  E                        
Sbjct: 597 NALGERDPDAEICRDSKGRPEPDSELRDTENIPLPEGTQLPLPMQFGPDKPNDKLVTAFR 656

Query: 599 --IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             I  Y  REV PHV DA++D            +VGYEI  NR FY Y+P R L +I+ E
Sbjct: 657 AEIDAYMAREVLPHVDDAWVDY--------SKTKVGYEIPINRHFYVYKPPRPLDEIEQE 708

Query: 657 LKGVEAQIATLLEEMAT 673
           +  +E +IA LL  +  
Sbjct: 709 ITELEGEIAGLLRGLVG 725


>gi|119896296|ref|YP_931509.1| site-specific DNA-methyltransferase [Azoarcus sp. BH72]
 gi|119668709|emb|CAL92622.1| Site-specific DNA-methyltransferase (adenine-specific) [Azoarcus
           sp. BH72]
          Length = 613

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 261/671 (38%), Positives = 374/671 (55%), Gaps = 65/671 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++GKVILPFT+LRRL+C LE T+ +V  +  A   + 
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEATKPSVLAELEAKTKAG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ + F+ + +G SFYNT+   L  L     + R NL +Y+ +FS  A+ IFE FDF + 
Sbjct: 62  LNPDPFLLRKSGQSFYNTAPLDLVKLLGDQDHIRQNLYTYVQAFSPAARDIFERFDFFTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKANLLYLVTEKFANIDLHPEAVDNTSMGLVFEELIRKFAEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +      ++RT+YDPT GTGG L+ A   + +     +    L   
Sbjct: 182 IRLMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEFLLEHNPQAR----LTMF 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F Y LSNPPFG 
Sbjct: 238 GQELNDESYAICKADMLIKGQD-------VANIVAGNTLSDDGHGARKFDYMLSNPPFGV 290

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + AV +EH+  G  GRFGPGLP++SDGSMLFLMHL +K+    +GG R  IVL+ 
Sbjct: 291 EWKKVEKAVRQEHEQKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAQDGGSRFGIVLNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK  +R+G+V
Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWIISNRKKADRKGQV 410

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ ++D     +  ++ S    ++  + D            
Sbjct: 411 QLIDASSFWQKMRKSLGSKRKEMSDAHIATVTRLFGSFTEAEYITVFDAAG--------- 461

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           + L    ++  T       +    K  P+ + F          +   +G+    V+  +K
Sbjct: 462 QQLGEPQLVTNTDTPPKAPEGGRLKRVPIARIF----------RNQDFGYTTITVERPLK 511

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +                              G+   D+ L + ENVP  E I  
Sbjct: 512 DEAGKPVLGSKGA----------------------RRGKPQADSALRDTENVPLGEDISA 549

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID+           +VGYEI FNR FY ++P R L  ID ELK V 
Sbjct: 550 YFKREVLPHAPDAWIDETK--------SKVGYEIPFNRHFYVFEPPRSLHAIDEELKTVS 601

Query: 662 AQIATLLEEMA 672
           A I  +LE +A
Sbjct: 602 ANIMKMLEGLA 612


>gi|294665738|ref|ZP_06731011.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292604474|gb|EFF47852.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 615

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 267/671 (39%), Positives = 375/671 (55%), Gaps = 65/671 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + ASL+ FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+ AV  ++ A   + 
Sbjct: 4   NHASLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEKTKPAVLAEFDAKTKAG 63

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ + F+K  A  SFYNTS   LS L     + R NL +YI +FS  A+ IFE FDF + 
Sbjct: 64  LNPDPFLKKKARQSFYNTSSLDLSKLLGDQDHIRQNLYAYIQAFSPEARDIFERFDFHAQ 123

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ I+L P+ V +  M +++E LIR+F    +E A +  TPR+V
Sbjct: 124 VERLAKANLLYLVTEKFANIDLPPEVVDNATMGSVFEELIRKFAEISNETAGEHFTPREV 183

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +      ++RT+YDPT GTGG L+ A  ++A+     +    L+ H
Sbjct: 184 IRLMVGLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSIAGEYLAEHNPQAR----LIMH 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+           +NI  G+TLS D   G +F Y LSNPPFG 
Sbjct: 240 GQELNDESYAICKADMLIKG-------QAVENIVAGNTLSDDGHAGHKFDYMLSNPPFGV 292

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V  EHK  G  GRFGPGLP++SDGSMLFLMHL  K+    +GG R  IVL+ 
Sbjct: 293 EWKKVEKTVRAEHKTKGFDGRFGPGLPRVSDGSMLFLMHLLAKMRPARDGGSRFGIVLNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K  +R+G V
Sbjct: 353 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPADRKGWV 412

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A   W  +R   G KR+ + ++    +  ++      +   ++D            
Sbjct: 413 QLIDAGSFWQKMRKSLGSKRKQMGEEHIDTVTRLFGDFTEAELVTVIDATGNA------- 465

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                  ++  T  A    +    K  P+ + F          +   +G+    V+  +K
Sbjct: 466 --QGAPQLVTATDSAPQAPEGGRLKRVPIARIF----------KNEDFGYTTITVERPLK 513

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                 +     K                        G+  PD+ L + ENVP  + I +
Sbjct: 514 DEAGNVVLGLKGKQ----------------------KGKPQPDSALRDTENVPLDQDIGE 551

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA++D+        E  +VGYEI FNR FY ++P R L  ID ELK V 
Sbjct: 552 YFAREVLPHAPDAWVDQ--------EKSKVGYEIPFNRHFYVFEPPRSLHAIDEELKAVT 603

Query: 662 AQIATLLEEMA 672
           A I  +L E+A
Sbjct: 604 ASIMKMLGELA 614


>gi|218960558|ref|YP_001740333.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729215|emb|CAO80126.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Cloacamonas acidaminovorans]
          Length = 690

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 258/709 (36%), Positives = 380/709 (53%), Gaps = 68/709 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + + + +A+FIW     L G +K  ++ KVILPFT+L+R +C L PT+  V  +     
Sbjct: 1   MSQNHSQIASFIWSICNLLRGPYKRNEYRKVILPFTVLKRFDCILAPTKDNVLAELPHLY 60

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
           G + ++  ES +++ G  FYN S   +  L   + N   NL+SYI  FS N + I E F 
Sbjct: 61  GKSDNIISESLIRITGVPFYNKSRLDMKKLLDDTENIAINLQSYINDFSPNVQKIIEYFA 120

Query: 120 FSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           FS  IARL+ A LLY + + F    ++L P  V +  M  ++E LIR    + +E A + 
Sbjct: 121 FSEQIARLQDANLLYLVLQRFVTDELDLSPQAVDNIQMGLVFEELIRIGAEQSNEEAGEH 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   LLL P+  L K    +++T++DP CGTGG LT A  ++ +     K  
Sbjct: 181 FTPREVIKLMVNLLLSPEADLAKS--HVVKTIFDPACGTGGMLTAAETYIKELNRDAKP- 237

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +GQ+   E++AVC + MLI+             I  G +  +D F+  +F Y L+
Sbjct: 238 ---HLYGQDWNKESYAVCCSDMLIKG--------EVAKIHYGCSFEQDGFSTDKFDYMLA 286

Query: 298 NPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG +W+K +  +  EH+  G  GRFG GLP+I+DGS+LFL H+ +K+     GG R 
Sbjct: 287 NPPFGVEWKKQQKTITDEHEKLGYNGRFGAGLPRINDGSLLFLQHMISKMRSVEEGGSRI 346

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            IV + SPLF G AGSGES IR+W++END +EAI+A+P  LF+ T I+TY+WI++N+K  
Sbjct: 347 GIVFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIAMPDQLFYNTGISTYIWIITNKKEA 406

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIIND------DQRRQILDIYVSRENGK------ 463
            R+GK+QLI+A   +  +R   G KR II D      D    I  I+    + +      
Sbjct: 407 HRKGKIQLIDARQFYNKMRKSLGNKRNIIGDGEDNRFDHISLITRIHSDFIDNQELEFTC 466

Query: 464 --------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL------SP 509
                    S++ D + FGY++I V RPLR++F + +  +ARL+ + T+ KL       P
Sbjct: 467 NGTTKTAIVSKIFDNKDFGYQKITVERPLRLNFQVSQERIARLDNNTTFAKLVESKKKDP 526

Query: 510 LHQSFWLDILKPMMQQIYP----------YGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
           + +   +D  K +  +I            Y   E ++K   ++       +      + A
Sbjct: 527 IEKQREMDAGKALQDRIKAALNSMDGSIIYMNREQYLKALRQALLQHH--LSLGNPELKA 584

Query: 560 FINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKI 619
            + A   +D  AD   D  G    DT L + ENVP  E I  YF REV PHVPDA+ID  
Sbjct: 585 ILEALSERDETADICRDSKGMPEADTELRDTENVPLKEDIDTYFKREVLPHVPDAWIDY- 643

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
                     ++GYEI FNR FY YQP R L+ I+AEL  +E +I  LL
Sbjct: 644 -------SKTKIGYEIPFNRHFYVYQPPRGLEVIEAELFNIEKEIEALL 685


>gi|189499715|ref|YP_001959185.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189495156|gb|ACE03704.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 686

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 265/695 (38%), Positives = 383/695 (55%), Gaps = 36/695 (5%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  ++ +F+W  A+ L G FK ++F K+ILPFT+LRRL+ ALE T++ V E     
Sbjct: 2   NEPAKFNNVVSFLWAIADLLNGAFKKSEFQKIILPFTVLRRLDYALEKTKAKVLETEHTL 61

Query: 63  GGSNIDLE--SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
               ++       + AGY+FYNTS+++  +L    TN   NL  Y+  FS N + IF  F
Sbjct: 62  KAKGLENRHGQLCRAAGYAFYNTSKFNYESLLHDDTNLALNLRQYVMGFSPNVREIFAAF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSG---IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +F  TI  L +  LLY + + F+    ++L P ++ +  M  ++EHL+R+F   ++E   
Sbjct: 122 NFDDTIRDLGRVNLLYLLMERFNEKSKVDLRPASMSNHEMGYVFEHLLRKFNEALNENPG 181

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD + L   L+L  D  L     G+ RT+YD  CGTGG L+    HV       K
Sbjct: 182 EHFTPRDAIRLMVDLVLMLDSELAGTE-GIPRTVYDCGCGTGGILSITKEHVLQINPQAK 240

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +      +GQEL P T A+  A MLI     +P    ++NI+ GSTLS D  +  RF   
Sbjct: 241 V----FLYGQELNPFTWAIARADMLIL----EPEGKDAENIKCGSTLSDDQLSDMRFDLQ 292

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
             NPP+G +W KD DAV  E   G  GRFG G P+ SDG MLFL HL  ++  P      
Sbjct: 293 FVNPPYGYEWSKDYDAVTAEAARGFDGRFGAGTPRKSDGQMLFLQHLIARMNDPEESQSY 352

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             I+L+ SPLF G A SGESEIRRW++END +EAIVA+P  LF+ T I TY+W+LSNRK 
Sbjct: 353 IGIILNGSPLFTGGAASGESEIRRWIMENDWLEAIVAMPQQLFYNTGIGTYIWLLSNRKP 412

Query: 416 EERRGKVQLINAT--DLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            + +GKV L++A+  + W+ + ++ G KRR I +D ++ IL++   R+ G   ++ D   
Sbjct: 413 AKHKGKVMLVDASGEEFWSGMSKSLGSKRREITEDHKQAILNLVKVRKEGPHVKLFDTTD 472

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI------ 526
           FGYR IKVLRPL++ F ++   LARL+A   +R L+   +    +  +   + +      
Sbjct: 473 FGYREIKVLRPLKLRFTVNAESLARLDAQAAFRNLAVSKKKAAAEQKREEQEGLALQAEI 532

Query: 527 ---------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                      Y   + F          K   +K     + A +   G +D  A+   D 
Sbjct: 533 RNTLQTLAGKTYTCRDKFTTAL--DAALKKAGLKLKAPVLKAILAGIGERDDAAEVCRDK 590

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           +G   PDT+L + ENVP  E ++ YF REV+PHVPDA+ID  + D KD ++GRVGYEI F
Sbjct: 591 DGNPEPDTDLNDTENVPLKEKVETYFAREVTPHVPDAWIDPAYCDAKDGQVGRVGYEIPF 650

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           NR FY +QP R L  IDA+LK    +I  ++  + 
Sbjct: 651 NRHFYVFQPPRLLSAIDADLKTSTDRILNMIGGLT 685


>gi|194288965|ref|YP_002004872.1| type I restriction-modification methylase m subunit, n-6 DNA
           methylase [Cupriavidus taiwanensis LMG 19424]
 gi|193222800|emb|CAQ68803.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Cupriavidus taiwanensis LMG 19424]
          Length = 612

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/672 (39%), Positives = 378/672 (56%), Gaps = 68/672 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L G++K +++G+VILPFT+LRRL+C L  T+ AV  ++ A   + 
Sbjct: 2   NHQALSSFIWSVADLLRGNYKQSEYGRVILPFTVLRRLDCVLAITKPAVLAEFEAKTQAG 61

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           I+ + F++  A  SFYN S   L  L     + R NL SY+  FS +A+ IFE FDF   
Sbjct: 62  INPDPFLQRKAKQSFYNVSPLDLVKLLGDQDHIRQNLYSYLQGFSASARDIFERFDFHMQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ I+LHPDTV +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKANLLYLVTEKFANIDLHPDTVDNAQMGLVFEELIRKFAEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   D  +      ++RT+YDPT GTGG L+ A   + +     +    L  +
Sbjct: 182 IRLMVNLIFIEDSDVLTAGNAVVRTIYDPTAGTGGMLSVADEFLREHNPSAR----LTMY 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F Y LSNPPFG 
Sbjct: 238 GQELNDESYAICKADMLIKGQD-------VGNIVAGNTLSDDGHGARKFDYMLSNPPFGV 290

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + AV +EH+  G  GRFGPGLP++SDGSMLFLMHL +K+    +GG R  IVL+ 
Sbjct: 291 EWKKVEKAVRQEHEQRGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAADGGSRFGIVLNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K E+R+G V
Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPEDRKGWV 410

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ +ND+Q   +  ++      + + +LD       R  V 
Sbjct: 411 QLIDASSFWQKMRKSLGSKRKEMNDEQIAMVTRLFGDFVEAETATVLDADGKEVGRYVVA 470

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                      T            KL+P+ + F          +   +G+    V+  ++
Sbjct: 471 ----------ATAQPPEAPVGGRVKLAPISRIF----------RNEEFGYTTITVERPLR 510

Query: 542 SNEAK-TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
               +  L VK  +                        G+   D++L + ENVP  E I 
Sbjct: 511 DENGQLMLGVKGKQ-----------------------KGKPQADSSLRDTENVPLDEEID 547

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YFVREV PH PDA++        D +  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 548 AYFVREVLPHAPDAWV--------DDDKSKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 599

Query: 661 EAQIATLLEEMA 672
              I  +LEE+A
Sbjct: 600 SVNIMRMLEELA 611


>gi|221233593|ref|YP_002516029.1| type I restriction-modification system methylation subunit
           [Caulobacter crescentus NA1000]
 gi|220962765|gb|ACL94121.1| type I restriction-modification system methylation subunit
           [Caulobacter crescentus NA1000]
          Length = 630

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/672 (39%), Positives = 376/672 (55%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV  ++       
Sbjct: 21  NHQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAAQG 80

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +D E F++ V+G  FYNT +  L+ +   + N   NL +Y+ +FS   + IFE F+F + 
Sbjct: 81  VDPEPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFHAQ 140

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 141 IERLAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 200

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA   E PG++RT+YDPT GTGG L+ A   +       K    L  +
Sbjct: 201 IRLMVELIFVEDDAALSE-PGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAK----LSMY 255

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+    D       NI  G+TLS D     +F Y LSNPPFG 
Sbjct: 256 GQELNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPFGV 308

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V  E +  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ 
Sbjct: 309 EWKKVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVLNG 368

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K   RRGK+
Sbjct: 369 SPLFTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRGKL 428

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ + +D    I  ++ +    + + + D       ++   
Sbjct: 429 QLIDASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKV--- 485

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                  I++      +  +    KL+PL +                +G+    V+  + 
Sbjct: 486 -------IVEAGSAPPVAPEGGKVKLAPLSKIL----------PNSAFGYRTITVERPLV 528

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +  +  K                        G+   D+   + ENVP  E ++ 
Sbjct: 529 DEAGKPVLGQKGK----------------------NKGKPQADSARRDTENVPLSEDVET 566

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID         +  + GYEI FNR FY ++P R L  IDA+L+ V 
Sbjct: 567 YFAREVLPHAPDAWIDA--------DKTKTGYEIPFNRHFYVFEPPRDLAQIDADLRAVT 618

Query: 662 AQIATLLEEMAT 673
            QI  ++ E+A 
Sbjct: 619 DQIKAMIAELAA 630


>gi|91776954|ref|YP_546710.1| N-6 DNA methylase [Methylobacillus flagellatus KT]
 gi|91710941|gb|ABE50869.1| N-6 DNA methylase [Methylobacillus flagellatus KT]
          Length = 728

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 253/741 (34%), Positives = 378/741 (51%), Gaps = 91/741 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+  V ++Y      N
Sbjct: 5   THEVLKSTIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKDKVLKQYEKLTAQN 64

Query: 67  IDLESFVKVAGYS--------FYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
           +   +  ++ G +         YNTS ++   L     N   NL SYI  FS  A+ IFE
Sbjct: 65  MPESAMERLLGRAADPKRNHPLYNTSPFTFERLLGDPENIAPNLVSYINGFSPTARTIFE 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F+  I +L+ +  L+ I K  + ++LHPD + +  M  ++EHL+ RF  + +E A D
Sbjct: 125 RFKFTDQIEKLDASNRLFTIVKAMADVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGD 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   L+   +  ++   PG+ RT+YDP CGTGG L+++   + D       
Sbjct: 185 HFTPREVIRLMANLVYTGEKDVYT--PGIFRTIYDPACGTGGMLSESEKFILDQNRQAN- 241

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L   GQE   E+ A+C + MLI+  ++     +      G   ++D F G++FHY L
Sbjct: 242 ---LALFGQEYNDESWAICCSDMLIKDEDTS---SIVLGDTLGDGKTRDGFEGEKFHYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           +NPPFG +W+  K  VEKEHK  G  GRFG GLP I+DGS+LFL H+ +K+     G   
Sbjct: 296 ANPPFGVEWKDQKTIVEKEHKELGFAGRFGAGLPAINDGSLLFLQHMISKMHPYKAGDEN 355

Query: 353 --GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+W++
Sbjct: 356 AVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIYTYVWLV 415

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK------ 463
           +NRK  ERRGKVQLI+ T     ++     KR  I +DQ R++  +Y +  +G+      
Sbjct: 416 TNRKAPERRGKVQLIDGTRFCQRMKKSLNNKRHEITEDQIRELTRLYGNFRDGETAEVVI 475

Query: 464 -----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                       SR+ + R FG+ ++ V RPLRM+F      +ARL+A   +  L+   +
Sbjct: 476 DHKTGEKETRVVSRIFENREFGFLKVTVERPLRMNFEASAERIARLDAQSAFANLATSKK 535

Query: 513 ---------------SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                               I   ++       + +  V E+     AK   VK +    
Sbjct: 536 RKDDKAAAREIAAGREQQDAIRNLLVSLEAKGRYRDRKVFEADLDKAAKAAGVKLAGPIK 595

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------------- 598
            A   A G +DP A+   D  G   PD+ L + EN+P                       
Sbjct: 596 KAIFAALGERDPEAEICRDAKGRPEPDSELRDTENIPLPAGIVLPLPMDFGPDKPNDRLI 655

Query: 599 ------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
                 I  Y  +EV PHVPDA++D         +  +VGYEI  NR FY Y+P R LQ+
Sbjct: 656 ESFRDVIDAYMAKEVLPHVPDAWVDY--------DKTKVGYEIPINRHFYVYKPPRPLQE 707

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           I+A+++ +E +IA LL+ +  
Sbjct: 708 IEADIRQLEGEIADLLKGLLA 728


>gi|74318698|ref|YP_316438.1| type I restriction-modification system methyltransferase subunit
           [Thiobacillus denitrificans ATCC 25259]
 gi|74058193|gb|AAZ98633.1| type I restriction-modification system methyltransferase subunit
           [Thiobacillus denitrificans ATCC 25259]
          Length = 676

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 258/683 (37%), Positives = 369/683 (54%), Gaps = 47/683 (6%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-NID 68
            L+NFIW  A+ L G ++   + +V+LP  +LRR +C LE T+ AV  KY  + G    D
Sbjct: 20  ELSNFIWSIADLLRGPYRPPQYERVMLPLVVLRRFDCVLESTKDAVLAKYAQYQGKLEGD 79

Query: 69  LES--FVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                  K++G  F+N S  S   L     N   +L SYI  FS+N + IFE F+F + I
Sbjct: 80  ALDGVLNKISGQRFHNHSPLSFEKLKGDPDNAHLHLVSYINGFSENVRKIFERFEFGNEI 139

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            R+ +  +L+ + K F  ++LHP  V +  M  ++E LIRRF  + +E A D  TPR+V+
Sbjct: 140 ERMREHNILFLVIKKFCEVDLHPGAVDNIEMGLLFEDLIRRFNEQANETAGDHFTPREVI 199

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L  +LL   DD L  + PG +R + DPTCGTGG L++   ++ +    H+    L  +G
Sbjct: 200 RLMVSLLFMHDDDLLSK-PGTVRKMLDPTCGTGGMLSETRKYLRE----HQSGARLFVYG 254

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q+  P ++AV  + +L+R   +D        I+ G TL  D F G+RF Y L+NPPFG  
Sbjct: 255 QDFNPRSYAVAASDLLLRTNLADAETST---IKFGDTLIDDQFPGERFDYFLANPPFGVD 311

Query: 305 WEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN----GGGRAAIV 359
           W++ +  V +EH K G  GRFG G P+++DG++LFL H+ +K E         G R AIV
Sbjct: 312 WKRQQKDVVREHEKQGFAGRFGAGTPRVNDGALLFLQHMVSKFEPVDPANNLDGSRLAIV 371

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + SPLF G AGSGESEIR+W++END +EAIVA+P  +F+ T I TY+W+++NRK   RR
Sbjct: 372 FNGSPLFTGGAGSGESEIRKWIIENDWLEAIVAMPEQMFYNTGIGTYVWVVTNRKEARRR 431

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           G++QLI+  D W S+R   G KRR  +D     I+  Y    +   S++ D   FGY R+
Sbjct: 432 GRIQLIDGRDRWQSLRRSLGDKRREFSDAHITDIVREYGDMRDNATSKVFDNADFGYNRL 491

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            + RPLR++F +      R                   ++L  +       G   S    
Sbjct: 492 TIERPLRLAFQITLERKERFLDACP-------------ELLNDLQAIDKAIGREASLDWN 538

Query: 539 SIKSNEAKTLKV---KASKSFIVAFINAFGRKDPRADPVTDVNG----EWIPDTNLTEYE 591
           +I      TLK    K     I AF  AF   +P+A+PV         E+ PD  L ++E
Sbjct: 539 AIWKQAQLTLKERDSKWRAPQIKAFREAFTEINPKAEPVIAKKAGGKVEYEPDPKLRDFE 598

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           NVP  E ++ YF   V PHV DA+ID            +VGYEINFNR FY++   R L 
Sbjct: 599 NVPLTEDVEAYFEHGVRPHVADAWIDHAK--------TKVGYEINFNRHFYRFTLPRPLA 650

Query: 652 DIDAELKGVEAQIATLLEEMATE 674
           +IDA+LK  E +I  LL E+  E
Sbjct: 651 EIDADLKRAEEEIVRLLREVTAE 673


>gi|16124873|ref|NP_419437.1| type I restriction-modification system, M subunit [Caulobacter
           crescentus CB15]
 gi|13421829|gb|AAK22605.1| type I restriction-modification system, M subunit, putative
           [Caulobacter crescentus CB15]
          Length = 611

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/672 (39%), Positives = 376/672 (55%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV  ++       
Sbjct: 2   NHQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAAQG 61

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +D E F++ V+G  FYNT +  L+ +   + N   NL +Y+ +FS   + IFE F+F + 
Sbjct: 62  VDPEPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFHAQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 IERLAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA   E PG++RT+YDPT GTGG L+ A   +       K    L  +
Sbjct: 182 IRLMVELIFVEDDAALSE-PGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAK----LSMY 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+    D       NI  G+TLS D     +F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V  E +  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K   RRGK+
Sbjct: 350 SPLFTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRGKL 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ + +D    I  ++ +    + + + D       ++   
Sbjct: 410 QLIDASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKV--- 466

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                  I++      +  +    KL+PL +                +G+    V+  + 
Sbjct: 467 -------IVEAGSAPPVAPEGGKVKLAPLSKIL----------PNSAFGYRTITVERPLV 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +  +  K                        G+   D+   + ENVP  E ++ 
Sbjct: 510 DEAGKPVLGQKGK----------------------NKGKPQADSARRDTENVPLSEDVET 547

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID         +  + GYEI FNR FY ++P R L  IDA+L+ V 
Sbjct: 548 YFAREVLPHAPDAWIDA--------DKTKTGYEIPFNRHFYVFEPPRDLAQIDADLRAVT 599

Query: 662 AQIATLLEEMAT 673
            QI  ++ E+A 
Sbjct: 600 DQIKAMIAELAA 611


>gi|25026604|ref|NP_736658.1| putative restriction enzyme subunit S [Corynebacterium efficiens
           YS-314]
 gi|259508263|ref|ZP_05751163.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium efficiens YS-314]
 gi|23491883|dbj|BAC16858.1| putative restriction enzyme subunit S [Corynebacterium efficiens
           YS-314]
 gi|259164151|gb|EEW48705.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium efficiens YS-314]
          Length = 663

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/672 (37%), Positives = 366/672 (54%), Gaps = 32/672 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+FIW  A+ L G +K   +G +ILPFT+L RL+  L PT+ AV                
Sbjct: 14  ASFIWSAADLLRGTYKQHQYGNIILPFTVLARLDGVLAPTKQAVLTAIEGLDPDQAPSAG 73

Query: 72  FVKV---AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            ++      YSFYN S + L +L     N   NL  Y+ +FS N + IF+ + F  TI  
Sbjct: 74  MLRNRAGHDYSFYNRSRHDLRSLQGDVDNLEENLRDYVNAFSPNVRDIFDQYKFDETIID 133

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL +I ++F+  +L P+ V + VM +I+E LIR+F    +E A +  TPR+V+ L
Sbjct: 134 LANNDLLLEILQHFAKADLRPEVVSNEVMGHIFEELIRKFAEASNETAGEHFTPREVIDL 193

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +LLD D+ L    PG+IR++YDPT GTGG L+ A N +       ++       GQE
Sbjct: 194 MVTILLDGDEELST--PGVIRSVYDPTAGTGGMLSAADNKIKAFNHQAQVN----LLGQE 247

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           + PE++A+C A M+++            NI  G+TL+   F  + FHY LSNPPFG  W+
Sbjct: 248 INPESYAICKADMVVKG-------QPITNIALGNTLTNPAFEDQTFHYALSNPPFGVAWK 300

Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSS 362
           KD+ AVE+EH+  G  GRFGPGLP++SDGS+LFLMHL +KL  P   GG   R AIVL+ 
Sbjct: 301 KDRPAVEREHEIAGHAGRFGPGLPRVSDGSLLFLMHLISKLREPGLQGGAAGRGAIVLNG 360

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGES IR+W+L+ND +EAI+ LPTD+F+ T I+TY+WIL+  K   R+GKV
Sbjct: 361 SPLFTGGAGSGESNIRKWVLDNDYLEAIIGLPTDMFYNTGISTYIWILNKDKDHARKGKV 420

Query: 423 QLINATDLWTSIRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT+++  +R     KR++++DD    I  +Y +    + S++ +   F YR I V 
Sbjct: 421 QLIDATEMFVKMRKSIGSKRKMLSDDNITTIATLYGNFVESEHSKIFNTTDFYYRTITVE 480

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPL++++      + R  A     KL    Q      L    +  +              
Sbjct: 481 RPLKLNYAFTPQRIERALAAKPVAKLEGWEQEALDKALGEAEEATHGVVSTNRAQFTKDL 540

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                   +    + + A +   G  D   + VT   G+   D +L + ENVP+ + I D
Sbjct: 541 KKILADEGLVLKPAVLKAVLTELGEHDDHGELVTKA-GKPEADASLRDTENVPWDQDIHD 599

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  REV P VPDA+ID+           + G EI F R FY+Y P R L+DID +L  V 
Sbjct: 600 YLKREVHPFVPDAWIDETK--------TKEGVEIPFTRHFYKYVPPRPLKDIDRDLDEVL 651

Query: 662 AQIATLLEEMAT 673
            +I   LE++  
Sbjct: 652 GRIRVRLEQVKA 663


>gi|188992675|ref|YP_001904685.1| Type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734435|emb|CAP52645.1| Type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. campestris]
          Length = 728

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 251/744 (33%), Positives = 381/744 (51%), Gaps = 91/744 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++    
Sbjct: 2   NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLL 61

Query: 64  GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +   ++  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ 
Sbjct: 62  AKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F FS  I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E 
Sbjct: 122 IFERFKFSDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   L+   +  ++K  PG++R++YDPTCGTGG L+++   +    + 
Sbjct: 182 AGDHFTPREVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNA- 238

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE   E+ A+C + MLI+  ++    ++ K    G   +KD F G+RFH
Sbjct: 239 ---AAHLHLYGQEYNDESWAICCSDMLIKDEDT---ANIVKGDTLGDGKTKDGFEGERFH 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL---- 348
           Y L+NPPFG +W+  K  VE EH N G  GRFG GLP I+DGS+LFL H+  K+      
Sbjct: 293 YMLANPPFGVEWKDQKTVVENEHANHGFTGRFGAGLPAINDGSLLFLQHMIAKMHPYDGG 352

Query: 349 -PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
            P   G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP  LF+ T I TY+
Sbjct: 353 NPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGIYTYV 412

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK--- 463
           W+++NRK EERRG VQLI+ T  +  ++     KR  I+D+Q   +  +Y +  +G+   
Sbjct: 413 WLVTNRKPEERRGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDGESAD 472

Query: 464 --------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                          SR+ + R FG+ ++ V RPLRM+F      +ARL+    +  L+ 
Sbjct: 473 VVIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPERIARLDEQSAFANLAT 532

Query: 510 LH---------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                            Q+    I + + +      + +  + E+     A  + +K   
Sbjct: 533 SKKRKDEKVAQQEIAEGQAIQRSIRELLAELAVKGLYGDRELFEADLEKAANKVGIKLPA 592

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES---------------- 598
               A  +A G +DP+A+   D  G   PD+ L + EN+P  E                 
Sbjct: 593 PIRKAIFSALGERDPQAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPDKPND 652

Query: 599 ---------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
                    I DY  REV PHV DA++D            +VGYEI  NR FY Y+P R 
Sbjct: 653 DLIEAFRDTIDDYMRREVLPHVADAWVDY--------SKTKVGYEIPINRHFYVYKPPRP 704

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L  I+A+++ +E +IA LL+ +  
Sbjct: 705 LPQIEADIRQLEGEIADLLKGLLA 728


>gi|228964021|ref|ZP_04125151.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795673|gb|EEM43150.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 253/692 (36%), Positives = 374/692 (54%), Gaps = 50/692 (7%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +     +FIW  AE L G +K  D+GKV+LP  +LRR +C LE T+  V   +  F   N
Sbjct: 3   NFQDKVSFIWSIAEVLRGPYKPEDYGKVVLPLAVLRRFDCVLENTKDEVLANFEKFKAMN 62

Query: 67  IDLES--FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            D       ++A  +F+NTS Y+ + L   S N  +NL  YI  FS  A+ I + FDF  
Sbjct: 63  EDAREPILNRIAKQNFHNTSNYTFAKLLSDSDNIADNLRDYINGFSKTARDIMDHFDFDR 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L+   LLY   K FS ++LHP+ V +  M  I+E LIRRF       A D  TPR+
Sbjct: 123 QIEKLDNNDLLYLTIKRFSELDLHPEVVSNVEMGYIFEELIRRFSEHA--EAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L  +LL   DD +  +  G+ +TLYD   GTGG  + A  ++ +          L  
Sbjct: 181 VVRLMVSLLFMQDDDILTKH-GLTQTLYDCAAGTGGMGSVAQEYLTELNKT----ADLEF 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
             QE+  E++A+C A +LI+  ++       KN++ G+TLS D F G +F Y +SNPP+G
Sbjct: 236 FAQEINGESYAICKADILIKGADA-------KNVRLGNTLSNDQFKGDKFDYLISNPPYG 288

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  ++ EH+  G  GRFGPG P+ SDG +LFLMHL +K++        G R AI
Sbjct: 289 VDWKSYEKPIKAEHEEQGYAGRFGPGTPRTSDGQLLFLMHLISKMKPVTAENPQGSRLAI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF+G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K   R
Sbjct: 349 IMNGSPLFSGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIR 408

Query: 419 RGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQL+NA D      ++ G KR  I+ +Q  +I+ +Y +    +  ++ D   FGY++
Sbjct: 409 KGKVQLVNAVDFSKKMKKSMGSKRNEISQEQIDEIVRLYGNFTESEHVKIFDNEEFGYQK 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH----------------QSFWLDILKP 521
           I V RPLR++F++ +  +  +     +  L+                   Q   + +L+ 
Sbjct: 469 ITVERPLRLNFLISEERIQCVAEQKAFENLAKSKKKGDNGLAEIEAGKELQEKIIAVLRG 528

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           +  +   +   E F K  +  +E K   V      + A +     KD  AD       + 
Sbjct: 529 LESEEL-FKNREEFTK--LLKDEFKKKDVAIGAPVLKAILAGLSEKDETADTCMKNKTDA 585

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
            P+T+L + E+VP  E + +YF REV PHV DA+ID+           ++GYEI F R F
Sbjct: 586 EPNTDLRDTESVPLKEDMYEYFEREVKPHVSDAWIDE--------SKTKIGYEIPFTRQF 637

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y+Y   R   +I AE+K +E  I   L+E+  
Sbjct: 638 YKYTKLRSSDEIMAEIKELEESILEKLKEVIG 669


>gi|78046747|ref|YP_362922.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035177|emb|CAJ22822.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 728

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/744 (33%), Positives = 378/744 (50%), Gaps = 91/744 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++    
Sbjct: 2   NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKDAVLKQHEKLL 61

Query: 64  GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +    +  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ 
Sbjct: 62  AKDTPKPAMHRLLGKAADPNRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F F   I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E 
Sbjct: 122 IFERFKFGDQIDKLDASNRLFTIIKAMASIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   L+   +  +++  PG++R++YDPTCGTGG L+++   +    + 
Sbjct: 182 AGDHFTPREVIRLMANLVYTGEQEVYR--PGIVRSIYDPTCGTGGMLSESEKFILGQNA- 238

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  HGQE   E+ A+C + MLI+  ++    ++ K    G   +KD F G+RFH
Sbjct: 239 ---AAHLHLHGQEYNDESWAICCSDMLIKDEDT---ANIVKGDTLGDGKTKDGFEGERFH 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFG +W+  K  VE EH K G  GRFG GLP I+DGS+LFL H+  K+     G
Sbjct: 293 YMLANPPFGVEWKDQKTVVENEHAKLGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYDEG 352

Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP  LF+ T I TY+
Sbjct: 353 HPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGIYTYV 412

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK--- 463
           W+++NRK EER+G VQLI+ T  +  ++     KR  I+D+Q   +  +Y +  +G+   
Sbjct: 413 WLVTNRKPEERQGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDGESAE 472

Query: 464 --------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                          SR+ + R  G+ ++ V RPLRM+F      +ARL+A   +  L+ 
Sbjct: 473 VVIDHKTGETENRVVSRVFENRELGFLKVTVERPLRMNFEATPGRVARLDAQSAFANLAT 532

Query: 510 LH---------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                            Q+    I + +++      + +  V E+     AK   +K   
Sbjct: 533 SKKRKDEKAARQEIAEGQAMQQCIRELLVRLAGKGLYMDREVFEADLEKVAKKAGIKLPA 592

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES---------------- 598
               A   A G +DP A+   D  G   PD+ L + EN+P  E                 
Sbjct: 593 PIRKAIFAALGERDPHAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPDKPND 652

Query: 599 ---------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
                    I DY  REV PHV DA++D            +VGYEI  NR FY YQP R 
Sbjct: 653 ALVEAFRDTIDDYMRREVLPHVADAWVDY--------SKTKVGYEIPINRHFYVYQPPRP 704

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L  I+A+++ +E +IA LL+ +  
Sbjct: 705 LPQIEADIRQLEGEIADLLKGLLA 728


>gi|260557401|ref|ZP_05829616.1| type I restriction-modification system, M subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|260409027|gb|EEX02330.1| type I restriction-modification system, M subunit [Acinetobacter
           baumannii ATCC 19606]
          Length = 761

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/773 (36%), Positives = 407/773 (52%), Gaps = 116/773 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + + +A+FIW  A  L GDFK + +G++ILPFTLLRRLEC LE +++AV  ++ 
Sbjct: 1   MTN--NNFSQIASFIWSVANLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHE 58

Query: 61  AFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                N+  E+  K       G +F+NTS   LS +G ++ + NL +Y+ SFS +A+ IF
Sbjct: 59  KVSKLNLPEEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIF 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F      L+ A LLYK+ + F+  +L P  V +  M  ++E LIRRF    +E A 
Sbjct: 119 EYFNFIEFAGLLDDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNETAG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD+V L TAL+   DD +  +  G+IRT+YDPT GTGGFL+  M ++ +   +  
Sbjct: 179 EHFTPRDIVRLTTALVFMEDDDVLTKD-GIIRTIYDPTAGTGGFLSSGMEYLHELNPN-- 235

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y 
Sbjct: 236 --AVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLAVDQFDYM 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNG 352
           LSNPPFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+        
Sbjct: 287 LSNPPFGVDWKKIEQDIKDEHEHKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSSES 346

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN
Sbjct: 347 GSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSN 406

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR------------ 459
           +K  ER+GKVQLINA++L T +R   G KR  + +++   I   Y +             
Sbjct: 407 KKAAERKGKVQLINASNLSTKMRKSLGSKRNYLTENEIATITQNYGAFVAVDTLANDGET 466

Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----------------- 500
             +    S++ D   FGYRR+ + RPLR+S  +  + +A L                   
Sbjct: 467 EQQKPFASKIFDNHEFGYRRVTIERPLRLSAQITDSAIAALRFAPKPFNAVMQSIDAQLG 526

Query: 501 --------------------------DITWRKLSPLHQSFWLDILKPM-----------M 523
                                        + +L        LD    +           +
Sbjct: 527 TAFGTAWTAESYGQLQDVALEVRAMIKAEFPELKEKDIKEVLDSKIWLFQKALMEKAEAL 586

Query: 524 QQIYPYGWAESFV-KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD------ 576
           Q++      + F   + +     K   +K         ++A   K+P A+PV +      
Sbjct: 587 QEVIGTEQFDDFNQFDEVLKKALKQADIKLDAKEKKQLLDAITWKNPEAEPVINKVLKQA 646

Query: 577 ------------VNGEWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDK 618
                          E++ D +L + EN+           I+DYF REV PHV DA+I+ 
Sbjct: 647 ENPLYGQFSYQGKVVEFVQDGDLRDAENIALNPKVSTTELIEDYFKREVQPHVADAWINA 706

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              DEKD EIG VGYEI FNR FY Y+P R L +IDA+L  V A+I  LL+E+
Sbjct: 707 DKRDEKDGEIGIVGYEIPFNRHFYVYEPPRDLSEIDADLDAVSAEIMQLLQEV 759


>gi|332974852|gb|EGK11767.1| N-6 DNA methylase [Psychrobacter sp. 1501(2011)]
          Length = 801

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/804 (35%), Positives = 405/804 (50%), Gaps = 146/804 (18%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + ++ +LA FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+   
Sbjct: 8   TRQSQTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQK 67

Query: 62  FGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                ++ E+       K  G +FYNTS  +L+ +G ++   NL  YI SFS +A+ IF 
Sbjct: 68  VSAMGLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFA 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F   + +L  A LLYK+ + F  I+L P+ V +  M  ++E LIRRF    +E A +
Sbjct: 128 HFKFEEFVGQLNDANLLYKVVQKFMNIDLSPEAVSNYEMGLVFEELIRRFAESSNETAGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 188 HFTPRDIVRLTTSLVFMEDDDALIKD-GIIRTIYDPTAGTGGFLSSGMEYVLELNPN--- 243

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  E          I+ G+TLS D     +F Y L
Sbjct: 244 -AVMRAFGQELNPESYAICKADMLIKGQEVS-------RIKLGNTLSDDQLPADKFDYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           SNPPFG  W+K    ++ EH+  G  GRFGPG P++SDGS+LFL+HL +K+    +    
Sbjct: 296 SNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPGQSHSNA 355

Query: 353 ------------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                       G R  I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+ 
Sbjct: 356 SLEAPSNDTAITGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFYN 415

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR 459
           T IATY+W+L+N K  ER+GKVQLI+ T+L++ +R   G KR  ++++  + I   +   
Sbjct: 416 TGIATYVWVLTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGDF 475

Query: 460 ENGK-----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFIL 490
           E                                 S++ D   FGYRR+ + RPLR+S  +
Sbjct: 476 EVVDARELDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQM 535

Query: 491 DKTGLARLE---------------------------------ADITWRKLSPLHQSFWLD 517
               +  L                                  +DI     + +   F   
Sbjct: 536 SDEAIESLRYAERTYDLVMPALYEKFGEQWTEDTYGEFGDLSSDIQVEARAMIKADFSEL 595

Query: 518 ILKPMMQQIYPYGWAESFV----------------------KESIKSNEAKTLKVKASKS 555
             K + + +    W E                          + +     K   +  S  
Sbjct: 596 KEKQIKEVLDSKLWREQLAVMNAAKTLQQEIGTEQFDDYNQFDVVFKQAIKDTGLDLSAK 655

Query: 556 FIVAFINAFGRKDPRADPV-----------------TDVNG-----EWIPDTNLTEYENV 593
                +NA   K+P A+ V                 TD  G     E+  D++L +YEN+
Sbjct: 656 DRKQILNAVTWKNPEAERVVKKSVKEANPLYGAFEITDSKGKAKIVEFETDSDLRDYENI 715

Query: 594 PYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
           P   S      I+ YF REV PHV DA+ID    D  D+EIG VGYEI FNR FY Y+P 
Sbjct: 716 PLNPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGIVGYEIPFNRHFYVYEPP 775

Query: 648 RKLQDIDAELKGVEAQIATLLEEM 671
           R L +IDA+L  V A+I  LL E+
Sbjct: 776 RPLSEIDADLDKVSAEIMQLLSEV 799


>gi|331650480|ref|ZP_08351552.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli M605]
 gi|331040874|gb|EGI13032.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli M605]
          Length = 781

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 286/790 (36%), Positives = 402/790 (50%), Gaps = 134/790 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + + + +A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV  +     
Sbjct: 2   SSTNFSQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETTKDAVITEAKKVK 61

Query: 64  GSNIDLESFVKV-----AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
              +  E+  K+      G +F+N S   LS +G    ++NLE+YI SFS +A+ IFE F
Sbjct: 62  AMKLPEEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            FS  + +L  A LL+K+ + F+  +L+P+ V +  M  ++E LIRRF    +E A +  
Sbjct: 122 KFSEFVGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+V+L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M  V     +     
Sbjct: 182 TPRDIVNLTTSLVFFDDDDALNKD-GIIRTIYDPTAGTGGFLSSGMEFVHQQNPN----A 236

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D    ++F Y LSN
Sbjct: 237 VMRAFGQELNPESYAICKADMLIKGQDVSL-------IKLGNTLSNDQLPAEKFDYMLSN 289

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    +GGGR  
Sbjct: 290 PPFGVDWKKIETDINDEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIG 349

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+WILSN+K  E
Sbjct: 350 IILNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWILSNKKAPE 409

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE---------------- 460
           R+GKVQLI+ ++L   +R   G KR I+ ++    I   +   E                
Sbjct: 410 RKGKVQLIDGSNLCGKMRKSLGSKRNILGEEDIGLITRTFGDFEPVATTTLAALGLEKAP 469

Query: 461 ------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK---------- 492
                                 S++     FGYRRI V RPLR+S  +            
Sbjct: 470 EQKSSRGRQPATTKTEAAKTFASKVFHSTDFGYRRITVERPLRLSAQISDHAIATLRFAP 529

Query: 493 -----------------------------TGLARLEADITWRKLSP-------------- 509
                                           AR      + +L                
Sbjct: 530 KPFNAPMAQLYDAFAFQWQDGNYGDLTAVESEARAILKADFSELKEKQIKDLLDSKLWLA 589

Query: 510 ----LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               + ++  +     M          +    +       +T  VK        FI+A  
Sbjct: 590 QRGLMEKARRIQAAMGMQAGGKDTVSNDFNQFQLTLKEALRTAGVKLDAKENKQFIDAIT 649

Query: 566 RKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES------IQD 601
           RK+P A+PV                  NG   E+ PD +L + ENVP   +      I+ 
Sbjct: 650 RKNPDAEPVVSKVLKEAAQPLYGACEYNGKVVEFEPDGDLRDNENVPLNPAVSTSELIEG 709

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF  EV PHV DA+I+    D KD +IG VGYEI FNR FY YQP R L++IDA+L  V 
Sbjct: 710 YFKAEVLPHVADAWINADKRDAKDGDIGIVGYEIPFNRHFYVYQPPRPLEEIDADLDAVS 769

Query: 662 AQIATLLEEM 671
           A+I  LL+E+
Sbjct: 770 AEIMKLLQEV 779


>gi|126666658|ref|ZP_01737636.1| type I restriction-modification system, M subunit, putative
           [Marinobacter sp. ELB17]
 gi|126629046|gb|EAZ99665.1| type I restriction-modification system, M subunit, putative
           [Marinobacter sp. ELB17]
          Length = 728

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 246/739 (33%), Positives = 374/739 (50%), Gaps = 91/739 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L  +IW  A  L G ++   +  V+LP  +LRRL+C LEPT+  V ++Y       +
Sbjct: 6   HDQLKGYIWDIANRLRGPYRPPQYRLVMLPIIVLRRLDCVLEPTKDKVLKEYEKLSAQGM 65

Query: 68  DLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
              +  ++ G        +  YNTS ++   L     N   NL +YI  FS  A+AIFE 
Sbjct: 66  PENAMERILGKAADPSRTHPLYNTSPFTFQRLLGDPENIAPNLVAYINGFSSTARAIFER 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F   I +L+ +  L+ I K  + ++LHPD + +  M  ++EHL+ RF  + +E A D 
Sbjct: 126 FKFIDQIEKLDVSNRLFTIIKAMAEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   +  ++   PG+ RT+YDPTCGTGG L+++   + D  +     
Sbjct: 186 FTPREVIRLMANLVYTGEKDVYT--PGIYRTIYDPTCGTGGMLSESEKFILDQNAQAN-- 241

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQE   E+ A+C + MLI+  ++     +      G   ++D F GK+FHY L+
Sbjct: 242 --LALFGQEYNDESWAICCSDMLIKDEDTS---SIVLGDTLGDGKTRDGFEGKQFHYLLA 296

Query: 298 NPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---- 352
           NPPFG +W++ K  VEKEHK  G  GRFG GLP I+DGS++FL H+ +K+    +G    
Sbjct: 297 NPPFGVEWKEQKHVVEKEHKEMGFAGRFGAGLPAINDGSLMFLQHMMSKMHPYKDGDEDS 356

Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+W+++
Sbjct: 357 AGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYVWLVT 416

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK------- 463
           NRK  ERRGKVQLI+ T     ++     KR  I ++Q   +  +Y + ++G+       
Sbjct: 417 NRKATERRGKVQLIDGTRFSQRMKKSLNNKRNEITEEQIHDLTRLYGNYQDGEVADVIMN 476

Query: 464 ----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                      S + + R FG+ ++ V RPLRM+F+     +ARL+    +  L+   + 
Sbjct: 477 HKTGERETRVVSHIFENREFGFLKVTVERPLRMNFMATPERIARLDDQAAFASLATSKKR 536

Query: 514 F--------------WLDILKPMMQQIYPYGW-AESFVKESIKSNEAKTLKVKASKSFIV 558
                              ++ ++  +   G   +    +S  +  A+   +K       
Sbjct: 537 KHEAVAAQEIEEGRQIQASIRTLLSTLASNGQSKDRAAFDSHMNVAAQKTGLKLPAPIKK 596

Query: 559 AFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL---------------------- 596
           A  NA G +DP A+   D  G+  PD+ L + EN+                         
Sbjct: 597 AIFNALGERDPNAEICLDGKGQPEPDSELRDTENISLPAGTQLPLPMQFGSDKPNDELME 656

Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
                I  Y  REV PHVPDA++D            +VGYEI  NR FY Y+P R L  I
Sbjct: 657 TFRADIDAYMAREVLPHVPDAWVDY--------SKTKVGYEIPINRHFYVYKPPRPLDKI 708

Query: 654 DAELKGVEAQIATLLEEMA 672
           + E+  +E +IA LL+ + 
Sbjct: 709 ETEITTLEGEIAELLKGLV 727


>gi|206975574|ref|ZP_03236486.1| N-6 DNA methylase [Bacillus cereus H3081.97]
 gi|206746036|gb|EDZ57431.1| N-6 DNA methylase [Bacillus cereus H3081.97]
          Length = 669

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/689 (36%), Positives = 369/689 (53%), Gaps = 44/689 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +     +FIW  AE L G +K  D+GKVILP  +LRR +C L+ T+  V   +  F   N
Sbjct: 3   NFQDKVSFIWSIAEVLRGPYKPEDYGKVILPLAVLRRFDCVLDSTKDEVLSNFEKFKAMN 62

Query: 67  IDLES--FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            D       ++A  +F+N S Y+ + L   + N  +NL  YI  FS  A+ I + FDF  
Sbjct: 63  EDAREPILNRIAKQNFHNASNYNFTKLLSDADNIADNLRDYINGFSKIARDIMDHFDFDR 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L+   LLY   K FS ++LHP+ V +  M  I+E LIRRF       A D  TPR+
Sbjct: 123 QIEKLDNNDLLYLTIKRFSELDLHPEIVSNVEMGYIFEELIRRFSEHA--EAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L  +LL   DD +  + PG+ +TLYD   GTGG  + A  ++ +  S       L  
Sbjct: 181 VVRLMVSLLFMHDDDMLTK-PGLTQTLYDCAAGTGGMGSVAQEYLKELNST----ADLEF 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
             QE+  E++A+C A +LI+  ++       KNI+ G+TLS D F G++F Y +SNPP+G
Sbjct: 236 FAQEINDESYAICKADILIKGADA-------KNIRLGNTLSNDQFKGEQFDYLISNPPYG 288

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  ++ EH+  G  GRFGPG P+ SDG +LFL+HL +K++        G R AI
Sbjct: 289 VDWKSYEKPIKAEHEEQGYNGRFGPGTPRTSDGQLLFLLHLISKMKPVTAENPQGSRLAI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K   R
Sbjct: 349 IMNGSPLFTGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIR 408

Query: 419 RGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINA D      ++ G KR  I  +Q  +I  +Y   +  ++ ++ D   FGY +
Sbjct: 409 KGKVQLINAVDFSKKMKKSMGSKRNEIAQEQIDEIARLYGDFKEREYVKIFDNEDFGYHK 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-------------QSFWLDILKPMMQ 524
           I V RPLR++F++ +  + R+     ++ L+                ++    I++ +  
Sbjct: 469 ITVERPLRLNFVISEERIQRVAEQKAFQNLTVSKKKGDNGLAEIEVGKAMQAKIMEVLRS 528

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 +        +  +  K   +      + A +     KD  A        +  PD
Sbjct: 529 LESEQLFKNRDEFTKLLKDAFKKEDITIGAPVLKAILAGLSEKDETAHICMKNKTDAEPD 588

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + ENVP  E I +YF REV PHV DA+ID+           +VGYEI F R FY+Y
Sbjct: 589 TDLRDTENVPLKEEIYEYFKREVIPHVLDAWIDE--------SKTKVGYEIPFTRQFYKY 640

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R   +I  E+K +EA I   L+++  
Sbjct: 641 TALRSSAEIMEEIKELEASILEKLKKVMG 669


>gi|229819987|ref|YP_002881513.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229565900|gb|ACQ79751.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 661

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 255/690 (36%), Positives = 361/690 (52%), Gaps = 55/690 (7%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L++F+W  A+ L G FK   +G V+LPFT+LRRLE  + P R A+         + + 
Sbjct: 2   SQLSSFVWSIADLLRGPFKPHQYGTVVLPFTILRRLEGVMAPHREAMVTAVAKADDATMR 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                +  G  FY TS Y+L+T      N   NL  Y+  FS     +F+ FDF + I +
Sbjct: 62  RALVRRATGLPFYTTSSYTLATALEDPDNLAANLVDYVNGFSAEV-DVFKHFDFEARIHQ 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+ A  L  + + F+ ++L  D V +  M +++EHLI +     +  A DF TPRD + L
Sbjct: 121 LDAADRLIPVTQGFARVDLSTDHVSNAGMGDLFEHLIFKDFEASNAEAGDFYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   D +    +PG+ R++YDP  GTGG L+ A  H+ +          L    QE
Sbjct: 181 LVDLVFAEDTSAL-AAPGITRSVYDPAAGTGGMLSVAEEHLHELNPKAN----LALFAQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           + P ++A+  + MLI+    +       N++ G TL++DLF G+ F + LSNPP+G  W+
Sbjct: 236 INPASYAIAKSDMLIKGQNIE-------NVRLGDTLAEDLFDGETFDFALSNPPYGVDWK 288

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSP 364
             + AV  EH  G  GRF PGLP + DGSMLFL+HL  K+        GGR  IVL+ SP
Sbjct: 289 AAEKAVRAEHVRGTGGRFAPGLPSVGDGSMLFLLHLVAKMRPVDARGNGGRGGIVLNGSP 348

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIR  LLE+DL++AIVALP D+F+ T IATYLWIL N K  ERR KVQL
Sbjct: 349 LFNGGAGSGPSEIRGHLLEHDLVDAIVALPNDMFYNTGIATYLWILDNSKQPERRRKVQL 408

Query: 425 INATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRE--------NGKFSRMLDYRTFGY 475
           I+AT L T +R     +R+ I+   R +I+  Y   +        +G  S++ D   F Y
Sbjct: 409 IDATKLGTKMRKSLGSKRVEISTADRGRIVQAYDRFDGVAADGDASGPRSKVFDTLDFAY 468

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             + V RPLR++F +    L  + A     K+  L     + +L     ++  Y   + F
Sbjct: 469 WSVTVERPLRLNFQVTPERLENVMASKPLSKVEGL-----VGVLSAFGDEL--YLNRDEF 521

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
           +            +V  +     A   A G +D  AD  TD  G   PDT L + E VP+
Sbjct: 522 MGRL--GTHLGAHRVGLTTPQRKALWQALGERDETADTCTDSKGRPEPDTGLRDTEIVPF 579

Query: 596 ------------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
                        ++IQ YF  EV+PHVPDA+I        D    RVGYEI F R FY+
Sbjct: 580 GWSDHPKADDAERDTIQAYFDAEVAPHVPDAWI--------DWTKTRVGYEIPFTRHFYE 631

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y P R L +IDA+L+   ++I  LL E+  
Sbjct: 632 YVPPRPLAEIDADLEASVSRILDLLREVEA 661


>gi|227540802|ref|ZP_03970851.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183431|gb|EEI64403.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 682

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/698 (35%), Positives = 369/698 (52%), Gaps = 47/698 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T+  V +     G
Sbjct: 2   STEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVSTKDKVAQIRDQKG 61

Query: 64  -GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
             + +    + K  GY F+NTS+++L TL +   N   NL SY+  FS NA+ + + +DF
Sbjct: 62  VPAEVKRLQYAKATGYPFWNTSKFTLHTLKNDPDNLEGNLRSYVEGFSPNARDVMKSYDF 121

Query: 121 SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            + I RL+++ LLY+I   F+   ++  P  V +  M +I+E LIRRF    +E A ++ 
Sbjct: 122 YTVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEYF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L DPD     E PG + +LYDP  GTGG L++A+    +     +I  
Sbjct: 182 TPREVIQLMVEVLFDPDMNAICE-PGFMASLYDPGVGTGGMLSEAIERAHELNEEARIE- 239

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L N
Sbjct: 240 ---VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCN 289

Query: 299 PPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN------ 351
           PPFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++          
Sbjct: 290 PPFGVEWKKYADPIKDEAEKRGSKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADTQNA 349

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV + SPLF G AG GES IRRW+LEND +EAIVALP  +F+ T I TY+W+LS
Sbjct: 350 PGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIVALPDQMFYNTGILTYIWVLS 409

Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           NRK   R+ KVQLI+AT  +  +R   G+KR+ +  D   QI  IY     G+ S++ D 
Sbjct: 410 NRKASIRKNKVQLIDATKFFARMRKPLGEKRKYLTADNIAQIARIYGDFTEGEHSKIFDT 469

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWL 516
           R FG+  + V RPLR++F      + R+     ++ L+                 +    
Sbjct: 470 REFGFHEVTVERPLRLNFTATPERIERVWEQTPFKNLATSKKRSEAARTQEIEDGKKTQR 529

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I+  +        W       ++     K   +      + A + A G  DP AD   D
Sbjct: 530 TIIDAIETLGGQRVWKNRDEFTAVLKTAFKDAGLAVRIPLLKAIVVALGETDPTADICRD 589

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
             G   PD  L + E +P  E I  Y  REV P+  DAY+        D +  ++GYEI 
Sbjct: 590 TKGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYV--------DPDKTKIGYEIP 641

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           F R+FYQY+      +  AE++ + A+I   + ++ +E
Sbjct: 642 FTRYFYQYEELGDPTETLAEIQTLGAEIQASIAKLFSE 679


>gi|149927744|ref|ZP_01915996.1| type I restriction-modification system methyltransferase subunit
           [Limnobacter sp. MED105]
 gi|149823570|gb|EDM82800.1| type I restriction-modification system methyltransferase subunit
           [Limnobacter sp. MED105]
          Length = 682

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/688 (39%), Positives = 386/688 (56%), Gaps = 38/688 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + LA+ IWKNAE L G ++  ++ KVILPFT+LRRL+C L P R  V  +Y A   S  D
Sbjct: 2   SKLADLIWKNAELLRGAYRENEYRKVILPFTILRRLDCVLAPKREEVYTQYEALRNSKYD 61

Query: 69  LESFVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +E  +  ++ Y F+NTS +SL  L  T  + R+NLE+ +  FS N + IFE F F STI 
Sbjct: 62  MEKILTTISDYPFFNTSRFSLEALAQTPDDVRDNLEAMVNGFSQNVRDIFEKFGFISTIN 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +LE+ G LY + + F+  +L+PD V +  M   +E L+R+F       A +  TPRDV+ 
Sbjct: 122 KLEEKGRLYLVVQRFAETDLNPDVVSNHDMGMAFEELLRKFNDVSP--AGEQYTPRDVIE 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L  +LL   D  L    PG+++T+YDPT GTGG L+    +V           +L   GQ
Sbjct: 180 LMVSLLFSTDQDLLS-IPGIVKTMYDPTAGTGGLLSVGEEYVKRMNDR----AVLSLFGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           ELE ET+A+C A MLIR            NI    TL  DL  G+ F Y  +NPP+G +W
Sbjct: 235 ELEDETYAICKADMLIRGQN-------PANIVNEDTLKIDLLAGEVFDYQAANPPYGVEW 287

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSS 363
           +  +DAV +EHK G  GRF PGLP I DG MLF +HL +K+   +   GGGR  +V + S
Sbjct: 288 KPAEDAVRREHKLGAAGRFAPGLPAIRDGQMLFSLHLLSKMRPFIDGKGGGRIGVVHNGS 347

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIRR+++ ND +EAIVA+PTDLF+ TNI TYLW ++NRK E+R+GKV 
Sbjct: 348 PLFAGDAGSGESEIRRYIMANDYLEAIVAMPTDLFYNTNIQTYLWFMTNRKPEKRQGKVM 407

Query: 424 LINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF----------SRMLDYRT 472
           L++A+ +   ++ N GKKRR   +D   QI   Y   ++  +          +++ D   
Sbjct: 408 LLDASKMGVLMKKNLGKKRREFTEDCIAQINKAYEDFKDMTWKDPAGERVLNAKVFDNAH 467

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           F YR++ + RPLRM F L       +  + ++ KL PL Q   +  L  +      +  A
Sbjct: 468 FHYRKVTIERPLRMRFQLTDFARDAVLGNPSFAKL-PLEQRHLVGCLLDVFDSTAVFTNA 526

Query: 533 ESFVKESIKS-------NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
           + F      +        +      + +   I       G KDP+AD  TD  G  I D+
Sbjct: 527 DDFRSALNAAADQVATTQQLTGKASRLTAKSIELLRKTIGVKDPKADITTDEKGSVISDS 586

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
           +L + E VP  + +  YF  EV PH PDA+I+K  +D +D  +G VG EINFNR FY Y+
Sbjct: 587 DLRDAEYVPMNKDVDAYFESEVKPHWPDAWINKEVVDSQDGVVGVVGTEINFNREFYVYK 646

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673
           P R  ++I A+++  E +   +L+ +  
Sbjct: 647 PPRSREEIAADIEAKEKKFMEMLKAIKG 674


>gi|326387107|ref|ZP_08208717.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208288|gb|EGD59095.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 594

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 260/660 (39%), Positives = 368/660 (55%), Gaps = 70/660 (10%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L GD++ +++G+VILPFT+LRRL+C L PT+ AV ++  A           ++ AG
Sbjct: 1   MADLLRGDYRQSEYGRVILPFTVLRRLDCVLAPTKDAVLKEAEA----GRPDPFLIRAAG 56

Query: 78  YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
             F+N S   L+ L     N   NL SYI  FS   + IFE F+F++ I RL K GLLY+
Sbjct: 57  MQFFNRSPLDLAKLIGDQDNIGTNLLSYIQGFSAEVRDIFEQFEFAAQIDRLAKNGLLYQ 116

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + + F+GI+LHP  V +  M   +E LIR+F    +E A +  TPR+V+ L   L+   D
Sbjct: 117 VTERFAGIDLHPARVDNAQMGLAFEELIRKFAEISNETAGEHFTPREVIRLMVNLIFVED 176

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           D +  + P ++R++YDPT GTGG L+ A  ++ +     +    L   GQEL PE++A+C
Sbjct: 177 DEVLTK-PSVVRSIYDPTAGTGGMLSIAEEYLREHNPTAQ----LTMWGQELNPESYAIC 231

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            A MLI+  +            QG+TLS D     RF Y LSNPPFG +W+K +  V+ E
Sbjct: 232 KADMLIKGQDITKIV-------QGNTLSNDGHPTARFDYMLSNPPFGVEWKKVQKEVQDE 284

Query: 316 H-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           H + G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVL+ SPLF G AGSGE
Sbjct: 285 HLRQGFNGRFGPGLPRVSDGSLLFLMHLLSKMRPWTEGGCRFGIVLNGSPLFTGGAGSGE 344

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           SEIRR++LENDL+EAI+ALPTD+F+ T IATY+WILSN+K + R GKVQLI+A+  W  +
Sbjct: 345 SEIRRYVLENDLVEAIIALPTDMFYNTGIATYVWILSNKKPQARTGKVQLIDASSFWQKM 404

Query: 435 RNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           R   G KR+ + +     +  ++ S    + + +LD       R  V+            
Sbjct: 405 RKSLGSKRKEMGEAHIEDVTRLFGSFVEAQLATVLDASGKEVSRQIVI----------AG 454

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
             A    +    KL+PL + F              +G+    V+  ++    K +  +  
Sbjct: 455 EAAPEAPEGGKVKLAPLSRIF----------PTQAFGYRTITVERPLRDEAGKPVLGQKG 504

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
           K+                       G+  PD+ L + ENVP  E I+ YF REV PH PD
Sbjct: 505 KA----------------------KGKMQPDSALRDTENVPLSEDIETYFEREVKPHAPD 542

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           A+ID+           +VGYEI FNR FY ++P R+L +IDAEL GV A+I  +L E+A 
Sbjct: 543 AWIDETK--------TKVGYEIPFNRHFYVFEPPRRLSEIDAELAGVTARIQVMLAELAA 594


>gi|294637840|ref|ZP_06716111.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Edwardsiella tarda ATCC
           23685]
 gi|291089014|gb|EFE21575.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Edwardsiella tarda ATCC
           23685]
          Length = 798

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 296/803 (36%), Positives = 416/803 (51%), Gaps = 151/803 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 13  MTN--TNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 70

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  E+     ++ +G SF+NTS+  L  +G  + + NLE+YI +FS +A+ IFE
Sbjct: 71  ELKTSPLPEEAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLENYIQAFSPDAREIFE 130

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 131 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 190

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 191 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPN--- 246

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 247 -AVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLPQDQFDYML 298

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 299 SNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGS 358

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 359 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 418

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK----- 463
           LSN+K  ER+GKVQLI+AT+L   +R   G KR ++ DD  + I   +   +  +     
Sbjct: 419 LSNQKAAERKGKVQLIDATNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVVETTTLE 478

Query: 464 -----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 479 ELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 538

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +A L                                             A++  +++  L
Sbjct: 539 IATLRFAPKPFNAPMERLYDEFAAQWQAETYGDFSGLEAEARAIIKAEFAELKEKQIKDL 598

Query: 511 HQSFWLDILKPMMQQIY------------------PYGWAESFVKESIKSNEAKTLKVKA 552
             S      + +M++                     +   +  +KE+IK+   K L  K 
Sbjct: 599 LDSKLWLAQRALMEKAQQIQTALATQAGGKTRVSNDFNQFKLTLKEAIKTAGVK-LDAKE 657

Query: 553 SKSFIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVP 594
           +K FI    +A   K+P A+PV                   G   E+  D  L + ENVP
Sbjct: 658 NKQFI----DAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVP 713

Query: 595 YLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
              +      I++Y   EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R
Sbjct: 714 LNPALSTSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPR 773

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
            L++IDA+L  V A+I  LL+E+
Sbjct: 774 PLEEIDADLDAVSAEIMKLLQEV 796


>gi|315656948|ref|ZP_07909833.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492340|gb|EFU81946.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 682

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/698 (35%), Positives = 365/698 (52%), Gaps = 47/698 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T++ V       G
Sbjct: 2   STEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKG 61

Query: 64  -GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
             + +    + +  GY F+N S ++L TL +   N   NL SY+  FS NA+ + + +DF
Sbjct: 62  VPAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDF 121

Query: 121 SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            + I RL+++ LLY+I   F+   ++  P  V +  M +I+E LIRRF    +E A +  
Sbjct: 122 YTVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L DPD     E PG + +LYDP  GTGG L+ A+    +     +I  
Sbjct: 182 TPREVIQLMVEVLFDPDMNAICE-PGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE- 239

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L N
Sbjct: 240 ---VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCN 289

Query: 299 PPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLE------LPPN 351
           PPFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++      +   
Sbjct: 290 PPFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQNA 349

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV + SPLF G AG GES IRRW+LEND +EAI+ALP  +F+ T I TY+W+LS
Sbjct: 350 PGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLS 409

Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           NRK   R+ KVQLI+AT L+  +R   G+KR+ + +D   QI  IY      + S++ D 
Sbjct: 410 NRKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFDT 469

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWL 516
             FG+  + V RPLR++F      + RL     ++ L+                 +    
Sbjct: 470 CEFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQQ 529

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I+  +        W       ++  +  K   +      + A + A G  DP AD   D
Sbjct: 530 AIIDTLETLDGQQVWKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTADICRD 589

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
             G   PD  L + E +P  E I  Y  REV P+  DAY+        D +  ++GYEI 
Sbjct: 590 AKGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYV--------DPDKTKIGYEIP 641

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           F R+FYQY+         AE++ + A+I   + ++  E
Sbjct: 642 FTRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 679


>gi|331666003|ref|ZP_08366897.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli TA143]
 gi|331057054|gb|EGI29048.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli TA143]
          Length = 781

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/790 (35%), Positives = 401/790 (50%), Gaps = 134/790 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + + + +A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  +     
Sbjct: 2   SSTNFSQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETSKDAVIAEAQKVK 61

Query: 64  GSNIDLESFVKV-----AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
              +  E+  K+      G +F+N S   LS +G    ++NLE+YI SFS +A+ IFE F
Sbjct: 62  AMKLPEEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            FS  + +L  A LL+K+ + F+  +L+P+ V +  M  ++E LIRRF    +E A +  
Sbjct: 122 KFSEFVGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+V+L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V     +     
Sbjct: 182 TPRDIVNLTTSLVFFDDDDALNKD-GIIRTIYDPTAGTGGFLSSGMEYVHKQNPN----A 236

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D    ++F Y LSN
Sbjct: 237 VMRAFGQELNPESYAICKADMLIKGQDVSL-------IKLGNTLSNDQLPAEKFDYMLSN 289

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    +GGGR  
Sbjct: 290 PPFGVDWKKIETDINNEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIG 349

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+W+LSN+K  E
Sbjct: 350 IILNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWVLSNKKAPE 409

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE---------------- 460
           R+GKVQLI+ ++L   +R   G KR I+ ++    I   +   E                
Sbjct: 410 RKGKVQLIDGSNLCGKMRKSLGSKRNILGEEDIGLITRTFGDFEPVATTTLAALGLEKAP 469

Query: 461 ------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK---------- 492
                                 S++     FGYRRI V RPLR+S  +            
Sbjct: 470 EQKSSRGRQPATTKTEAAKTFASKVFHSTEFGYRRITVERPLRLSAQISDDAIATLRFAP 529

Query: 493 -----------------------------TGLARLEADITWRKLSP-------------- 509
                                           AR      + +L                
Sbjct: 530 KPFNAPMAQLYDAFAFQWQDGNYGDLTAVESEARAILKADFSELKEKQIKDLLDSKLWLA 589

Query: 510 ----LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               + ++  +     M+         +    +       +T  VK        FI+A  
Sbjct: 590 QRGLMEKARRIQAAMRMLAGGKETVSNDFNQFQLTLKEALRTAGVKLDAKENKQFIDAIT 649

Query: 566 RKDPRADPVTDVN------------------GEWIPDTNLTEYENVPYLES------IQD 601
           RK+P A+PV                       E+  D +L + ENVP   +      I+D
Sbjct: 650 RKNPDAEPVISKVLKEAPQPLYGAFEYHGKVVEFESDGDLRDNENVPLNPAVSTNELIED 709

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF  EV PHV DA+I+    D KD +IG VGYEI FNR FY Y P R L++IDA+L  V 
Sbjct: 710 YFKAEVLPHVADAWINADKRDAKDGDIGIVGYEIPFNRHFYVYTPPRPLEEIDADLDAVS 769

Query: 662 AQIATLLEEM 671
           A+I  LL+E+
Sbjct: 770 AEIMKLLQEV 779


>gi|307244214|ref|ZP_07526329.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492364|gb|EFM64402.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 670

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 256/689 (37%), Positives = 383/689 (55%), Gaps = 48/689 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + +  +NFIWK A+ L GD+K  ++  VILPFT+L+RL+  L      V +        N
Sbjct: 4   NISDKSNFIWKIADLLRGDYKQHEYADVILPFTVLKRLDSVLIDNHDEVVKLNKTLTYKN 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            D     + +GY FYN SE++   L     N   N+  YI  FS+NA+ I E F+  + I
Sbjct: 64  KDP-FLCRASGYKFYNVSEFTFEKLKDDPNNLDENIVDYIKGFSENAREILEAFNIYTQI 122

Query: 125 ARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            RLEKAGLLY I   F   I+LHPD V +  M  I+E LIR+F    +E A +  TPR+V
Sbjct: 123 ERLEKAGLLYLIVSKFADEIDLHPDRVSNTEMGYIFEELIRKFSEMSNETAGEHFTPREV 182

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L  A+L DPD      SP  +  LYDP  GTGG L+  +++  +         I+  +
Sbjct: 183 IRLMVAVLFDPDMDKIS-SPSFMAKLYDPAAGTGGMLSAGISYAEELNER----AIIEVY 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+A+C +  LI+    +       NI  G++ ++D    ++F Y L NPPFG 
Sbjct: 238 GQELNQSTYAICKSDTLIKGKGYE-------NIYYGNSFTEDGVKNEKFDYMLCNPPFGV 290

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +DAV+ E ++ G  GRFG GLP+ISDGS LFL H+ +K++ P NGG R  IV + 
Sbjct: 291 EWKKYQDAVKDEAQSLGFDGRFGAGLPRISDGSFLFLQHMISKMKDPKNGGSRIGIVFNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW++EN  +E I+ALP  LF+ T I TY+WILSNRK++ R+GK+
Sbjct: 351 SPLFTGDAGSGESEIRRWIIENGWLETIIALPDQLFYNTGILTYVWILSNRKSKLRQGKI 410

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+ T  +  +R   G KR+ ++++  ++I +IY S  + ++S++ D   F + +I V 
Sbjct: 411 QLIDGTSFFERMRKPLGDKRKKLSEEDTKKIANIYGSFVDSEYSKIFDEDDFAHYKITVE 470

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP----------------MMQQ 525
           RPLR++F++    + +L+ +  +  L+   +       K                 MM  
Sbjct: 471 RPLRLNFMVSPDRIEKLKEETAFINLAKSRKKNEETRNKEIEEGEKLQRDIIHVLEMMDD 530

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
              Y     F K   K+ +A  + +K       A +NA   KD  A+   D  G   PDT
Sbjct: 531 SVFYKDRAKFEKILNKAFKAAGISIK--APLKKAILNALSEKDETAEICRDKKGNPEPDT 588

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
            L + E +P+ + I++YF REV P+ PDA+ID+        +  ++GYEI F R+FY+Y+
Sbjct: 589 ELRDIEQIPFKDDIEEYFKREVLPYAPDAWIDE--------DKTKIGYEIPFTRYFYKYE 640

Query: 646 PSRKLQDIDAELKGV----EAQIATLLEE 670
                ++   E+K +    +  I++L EE
Sbjct: 641 ELGDAKETLEEIKELGLSIQESISSLFEE 669


>gi|227496835|ref|ZP_03927103.1| type I restriction-modification system methyltransferase subunit
           [Actinomyces urogenitalis DSM 15434]
 gi|226833668|gb|EEH66051.1| type I restriction-modification system methyltransferase subunit
           [Actinomyces urogenitalis DSM 15434]
          Length = 687

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/698 (35%), Positives = 364/698 (52%), Gaps = 47/698 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T++ V       G
Sbjct: 7   STEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKG 66

Query: 64  -GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
             + +    + +  GY F+N S ++L TL +   N   NL SY+  FS NA+ + + +DF
Sbjct: 67  VPAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDF 126

Query: 121 SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            + I RL+++ LLY+I   F+   ++  P  V +  M +I+E LIRRF    +E A +  
Sbjct: 127 YTVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHF 186

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L  PD     E PG + +LYDP  GTGG L+ A+    +     +I  
Sbjct: 187 TPREVIQLMVEVLFGPDMNAICE-PGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE- 244

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L N
Sbjct: 245 ---VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCN 294

Query: 299 PPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLE------LPPN 351
           PPFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++      +   
Sbjct: 295 PPFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQNA 354

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV + SPLF G AG GES IRRW+LEND +EAI+ALP  +F+ T I TY+W+LS
Sbjct: 355 PGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLS 414

Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           NRK   R+ KVQLI+AT L+  +R   G+KR+ + +D   QI  IY      + S++ D 
Sbjct: 415 NRKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFDT 474

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWL 516
             FG+  + V RPLR++F      + RL     ++ L+                 +    
Sbjct: 475 CEFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQQ 534

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I+  +        W       ++  +  K   +      + A + A G  DP AD   D
Sbjct: 535 AIIDTLETLDGQQVWKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTADICRD 594

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
             G   PD  L + E +P  E I  Y  REV P+  DAY+        D +  ++GYEI 
Sbjct: 595 AKGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYV--------DPDKTKIGYEIP 646

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           F R+FYQY+         AE++ + A+I   + ++  E
Sbjct: 647 FTRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 684


>gi|332664153|ref|YP_004446941.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332967|gb|AEE50068.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 653

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/680 (36%), Positives = 370/680 (54%), Gaps = 42/680 (6%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF--- 62
            +     N IW+ A+ L G ++   + +V+LP T+LRR +C L PT+ AV ++Y      
Sbjct: 2   ANHNDHINLIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKEAVLKEYQQLDSK 61

Query: 63  --GGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDF 118
             G   +      K++   F+N S  +   L     +   +L SYI  FS N + IFE F
Sbjct: 62  YHGQDGVIDSRLNKISKQQFHNHSPLTFERLKGAPDSIAKDLVSYINGFSKNVRRIFEYF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +F   I R+ +A +LY +   FS ++LHP+ V +  M  I+EHLIR+F    +E A D  
Sbjct: 122 EFEKEIERMNEANILYLVVSRFSTVDLHPNAVSNTDMGKIFEHLIRKFNELANETAGDHF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   LL   DD L   +PG +RT++DP CGTGG L +A  ++ +    H +  
Sbjct: 182 TPREVIRLMVNLLFINDDKLLT-TPGTVRTMFDPACGTGGMLAEAQAYLRE----HHLEA 236

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L  +GQ+      A   + MLI+ +  +   +   NI+ G +L +D F   +F Y LSN
Sbjct: 237 KLYTYGQDYNKRAFATAASDMLIKEVAHNGLGE---NIKFGDSLIEDQFKENKFDYLLSN 293

Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----G 353
           PPFG  W+K +  + +E+ K G  GRFG GLP+++DG++LFL H+ +K E         G
Sbjct: 294 PPFGVDWKKQQSEITRENQKMGFAGRFGAGLPRVNDGALLFLQHMISKFEPVDEANRKYG 353

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R AIV S SPLF G AGSGES IRRW++END +EA+V+LP  +F+ T I TY+WI++NR
Sbjct: 354 SRLAIVFSGSPLFTGGAGSGESNIRRWIIENDWLEAVVSLPEQMFYNTGIGTYVWIVTNR 413

Query: 414 KTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + R+GK+QL++A D +  +R   G KRR I ++Q   I+ +Y   E  K +++ +   
Sbjct: 414 KEKRRKGKIQLLDARDFFVPMRRSLGDKRREIAEEQIVDIVQLYGRFEETKHAKIFNNTD 473

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           FGY R+ V RPLR+ + +     +R                    +L  +       G  
Sbjct: 474 FGYTRVTVERPLRLRYQMTLEDKSRFLDACPH-------------LLDDIQAIDKALGRE 520

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
                        K L++K   +    F + F ++DP A PV      + PD+ L ++EN
Sbjct: 521 PIMDWNKTDQRIRKILRLKWKATEHKLFRDVFTQRDPEAVPVLKSKNSYEPDSELRDFEN 580

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           +P  E ++ YF REV PHVPDA+ID+           +VGYEINFN  FY + P RKL+ 
Sbjct: 581 IPLSEDVEKYFQREVLPHVPDAWIDR--------SKDKVGYEINFNSHFYVFLPPRKLEL 632

Query: 653 IDAELKGVEAQIATLLEEMA 672
           ID ELK VE +I  LL+E+ 
Sbjct: 633 IDKELKEVEEEILKLLKEVT 652


>gi|66769485|ref|YP_244247.1| type I restriction-modification system, M subunit, putative
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|66574817|gb|AAY50227.1| type I restriction-modification system, M subunit, putative
           [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 248/744 (33%), Positives = 380/744 (51%), Gaps = 91/744 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++    
Sbjct: 2   NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLL 61

Query: 64  GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +   ++  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ 
Sbjct: 62  AKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F F   I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E 
Sbjct: 122 IFERFKFGDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   L+   +  ++K  PG++R++YDPTCGTGG L+++   +    + 
Sbjct: 182 AGDHFTPREVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNA- 238

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE   E+ A+C + MLI+  ++    ++ K    G   +KD F G+RFH
Sbjct: 239 ---AAHLHLYGQEYNDESWAICCSDMLIKDEDT---ANIVKGDTLGDGKTKDGFEGERFH 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFG +W+  K  VE EH N G  GRFG GLP I+DGS+LFL H+  K+     G
Sbjct: 293 YMLANPPFGVEWKDQKTVVENEHANHGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYEEG 352

Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G + AIV + SPLF+G AGSG S IRRW++E D ++ IVALP  LF+ T I TY+
Sbjct: 353 HPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIEKDWLDTIVALPDQLFYNTGIYTYV 412

Query: 408 WILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIYVSRENGK--- 463
           W+++NRK EER+G VQLI+ T  +   +++   KR  I+D+Q   + ++Y +  +G+   
Sbjct: 413 WLVTNRKPEERQGYVQLIDGTRFFRKMMKSLNNKRNEISDEQIEALTELYGNYGDGESAD 472

Query: 464 --------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                          SR+ + R FG+ ++ V RPLRM+F      +ARL+    +  L+ 
Sbjct: 473 VVIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPGRIARLDEQSAFANLAT 532

Query: 510 LH---------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                            Q+    I + + +      +++  V E+     AK   +K   
Sbjct: 533 SKKRKDEKAARQEIAEGQAMQRSIRELLAELAAKGIYSDREVFEADLEKAAKKAGIKLPA 592

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES---------------- 598
               A   A G +DP+A    D  G   PD+ L + EN+   E                 
Sbjct: 593 PIRKAIFVALGERDPQAKICRDAKGRPEPDSELRDTENISLPEGTELPLPMAFGPDKPND 652

Query: 599 ---------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
                    I+DY  REV PHV DA++        D    +VGYEI  NR FY Y+P R 
Sbjct: 653 DLVEAFRDTIEDYMRREVLPHVADAWV--------DFSKTKVGYEIPINRHFYVYKPPRP 704

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L  I+++++ +E +IA LL+ +  
Sbjct: 705 LPQIESDIRQLEGEIADLLKGLLA 728


>gi|260552462|ref|ZP_05825838.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
 gi|260405269|gb|EEW98765.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
          Length = 759

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/771 (37%), Positives = 403/771 (52%), Gaps = 114/771 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + + +A FIW  A+ L GDFK   +G+VILPFTLLRRLEC  E ++++V E   
Sbjct: 1   MTN--TNFSQVAAFIWSVADLLRGDFKQFQYGRVILPFTLLRRLECVFESSKASVLEANE 58

Query: 61  AFGGSNIDLESFVKV-----AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                 +  E+  K+      G SF+NTSE  LS+LG  N R NL +YI  FS +A+ IF
Sbjct: 59  KVKAMPLPEEAKEKILLKATDGLSFFNTSELDLSSLGQKNIRANLGNYIQHFSKDAREIF 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F F      L+ A LLYK+ + F+  +L P+ + +  M  ++E LIRRF    +E A 
Sbjct: 119 EHFKFDEFTGLLDDANLLYKVIQKFASTDLSPENISNHDMGLVFEELIRRFAESSNETAG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD+V L T L+   DD    +  G+IRT+YDPT GTGGFL+    +V +      
Sbjct: 179 EHFTPRDIVRLTTGLIFSQDDDALNKE-GVIRTIYDPTAGTGGFLSSGTEYVYEHNPE-- 235

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              ++   GQEL PE++A+C A MLI+  +        +NI+ G+TLS D    ++F Y 
Sbjct: 236 --AVMRVFGQELNPESYAICKADMLIKGQD-------VRNIKLGNTLSNDQLAYEKFDYM 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNG 352
           LSNPPFG  W+K +D ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+        
Sbjct: 287 LSNPPFGVDWKKIEDEIKDEHQQKGFNGRFGAGLPRVSDGSLLFLMHLISKMRDVDSTGQ 346

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+F+ T IATY+W+LSN
Sbjct: 347 GSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPTDMFYNTGIATYVWVLSN 406

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF------- 464
           +K  ER+GKV LINA++L + +R   G KR  + + + R I   Y + E           
Sbjct: 407 KKDAERKGKVHLINASNLSSKMRKSLGSKRNYLTESEIRTITQNYGAFEAVDTLTLDGES 466

Query: 465 -------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----------------D 501
                  S++ +   FGYRR+ + RPLR+S  L    +A L                   
Sbjct: 467 EQQKPFSSKIFNSYEFGYRRVTIERPLRLSAQLSDDRIATLRFAPKPFNAVMQKVYESYG 526

Query: 502 ITWRK---------------------------------LSP---LHQSFWLDILKPMMQQ 525
             W +                                 L P   L Q   +   + +  +
Sbjct: 527 KDWTETSYGQLSDDAQVEIRALIKAEFSELKEKDIKTVLEPKLWLEQRALMRKAQSLQTK 586

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--NG---- 579
           I    + +  + + +     K   +K        F++A   K+P A+P  +    G    
Sbjct: 587 IGTAQFDDFNIFDELLKQALKDSSIKLEGKEKKQFLDAVTWKNPEAEPCINKVIKGKENP 646

Query: 580 ------------EWIPDTNLTEYENVPYLES-------IQDYFVREVSPHVPDAYIDKIF 620
                       E++ D +L + EN+            I+ YF REV  HVPDA+I+   
Sbjct: 647 LYGQFSYKAKVVEFVQDGDLRDAENIALDHPSQSTIDLIESYFKREVQLHVPDAWINADK 706

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            D +D EIG VGYEI FNR FY YQP R L +IDA+L  V  +I  LL+E+
Sbjct: 707 RDAQDGEIGIVGYEIPFNRHFYVYQPPRDLAEIDADLDAVSREIMALLQEV 757


>gi|229491487|ref|ZP_04385308.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus erythropolis SK121]
 gi|229321168|gb|EEN86968.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus erythropolis SK121]
          Length = 658

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/684 (38%), Positives = 369/684 (53%), Gaps = 39/684 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S   +AN IW  A+ L GD+K  ++G+VILP TLLRRL+  +EPTR AVR +  
Sbjct: 1   MT-TAPSHTKMANDIWSIADLLRGDYKRHEYGQVILPLTLLRRLDTVMEPTRDAVRARDS 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDF 118
           A    N         A   FYNTS    ST+ +       NL  YI  FS N + +   F
Sbjct: 60  ALDMQNKQ-RMLEIAAKLPFYNTSAQDFSTIAADANSVAKNLRDYINGFSSNIREVLARF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  + I RL  A LLY++   F+ ++   D + +  M  ++EHLIRRF  + +E A +  
Sbjct: 119 DLDNQITRLASAKLLYQVVGKFAEMK-DLDKLSNHDMGYVFEHLIRRFAEDSNETAGEHF 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   LL+ PD         +I  + DP CGTGG LT A +H+       ++  
Sbjct: 178 TPREVIKLMVNLLIAPDADTVAGEGQVIN-ILDPACGTGGMLTAAEDHIKSINPKAEV-- 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQEL  E+ A+C + ML+R    D        ++ G++ S+D +  K+F Y L+N
Sbjct: 235 --YLFGQELNGESWAICQSDMLMRSQRGD--------VKFGNSFSEDGYESKKFDYMLAN 284

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG +W+K KD V  E + G  GRFG G P+I+DGS LFL H+ +K+E     G R AI
Sbjct: 285 PPFGVEWKKVKDDVLDEAERGHAGRFGAGTPRINDGSFLFLQHMISKMEPVEGKGARLAI 344

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + SPLF G AGSGESEIRRW+LEND +E +VALP  LF+ T I+TY WILSNRK ++ 
Sbjct: 345 VFNGSPLFTGAAGSGESEIRRWILENDWLEGVVALPDQLFYNTGISTYFWILSNRKPKKL 404

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIY---------VSRENGKFSRML 468
           + KV L++A D W  +R   G KR+ I+  Q   I  +Y             +    ++ 
Sbjct: 405 QKKVILLDARDQWQKMRKSLGDKRKKISAAQINHITKLYVDALEIAECTDHPDNGKIKIF 464

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             R FGYRRI V RPL++ F + +  LA LE            +S  +  L+  +  I+ 
Sbjct: 465 GTREFGYRRITVERPLKLRFEISEATLAALEEGKGLSAWD--GRSMAVLALRRSIGNIW- 521

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           +   E+  +      +A       +++ + AF  A    DP  +  T  +GE + D +L 
Sbjct: 522 WTKKEAAEELRALIADADAEWPSKTQAMLKAFWRAVSVSDPAGEVQTSRDGEVLADPDLR 581

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           +YENVP  E I +YF REV+ HVPDA+ID+        E  +VGYEI   R FY Y P R
Sbjct: 582 DYENVPLDEDIDEYFAREVTSHVPDAWIDR--------EKTKVGYEIPITRHFYAYTPPR 633

Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672
            L +IDAEL  +E QI  LL E+ 
Sbjct: 634 PLVEIDAELSELENQIQKLLSEVT 657


>gi|329115022|ref|ZP_08243777.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter
           pomorum DM001]
 gi|326695465|gb|EGE47151.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter
           pomorum DM001]
          Length = 615

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 260/674 (38%), Positives = 374/674 (55%), Gaps = 67/674 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T   ASL++ IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   + 
Sbjct: 3   TTPRTASLSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWE 62

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              ID  SF  K AG  F NTS+++L ++     N   NL +YI +FS  A+ IF+ F F
Sbjct: 63  SKGIDPMSFMEKAAGLRFVNTSDFTLKSVLGDPDNLTQNLSAYINAFSPAARDIFDHFRF 122

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    RL KA LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TP
Sbjct: 123 TEQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEHFTP 182

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   L+   DD L       +RT+YDPT GTGG L+ A   + D     +    L
Sbjct: 183 REVIKLMVNLIFAEDDGLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDAR----L 238

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLIR  +         NI+ G+TLS D     +F Y LSNPP
Sbjct: 239 TMFGQELNPESYAICKADMLIRNQDVS-------NIRLGNTLSDDELADYKFDYMLSNPP 291

Query: 301 FGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG +W+K +  V  EH+  G  GRFGPGLP+ISDGSMLFL+HL +K+    +GG R  IV
Sbjct: 292 FGVEWKKVEKTVRAEHEKLGYNGRFGPGLPRISDGSMLFLLHLVHKMRPTKDGGSRFGIV 351

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+FF T IATY+W+L+NRK + R+
Sbjct: 352 LNGSPLFTGAAGSGESEIRRFVLEDDLVEAIIALPTDMFFNTGIATYVWVLTNRKPKNRK 411

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GKVQLI+A+  W  +R   G KR+ + +D    +  ++   +  + + +          +
Sbjct: 412 GKVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITGANGTQTCAV 471

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                      + +        +    +L+PL + F              +G+    V+ 
Sbjct: 472 -----------VTQGETPPEAPEGGKVRLAPLSRIF----------NNKDFGYQTITVER 510

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
             +  +   +  +  K                      + G+ +PDT+L + ENVP  E 
Sbjct: 511 PQRDEDGNIVLGQRGK----------------------MKGKKMPDTSLRDTENVPLNED 548

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  YF REV PH PDA+ID+        +  ++GYEI FNR+FY ++P R L++IDA+LK
Sbjct: 549 IHAYFKREVLPHAPDAWIDE--------DKTKIGYEIPFNRYFYVFEPPRPLEEIDADLK 600

Query: 659 GVEAQIATLLEEMA 672
            V A+I  +LEE++
Sbjct: 601 EVTAKIMAMLEELS 614


>gi|254383776|ref|ZP_04999124.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces sp. Mg1]
 gi|194342669|gb|EDX23635.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces sp. Mg1]
          Length = 632

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/656 (39%), Positives = 374/656 (57%), Gaps = 48/656 (7%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA-GYSFYNTSEYSLSTLGST--NTR 97
           LRRLEC LEPTR  V E    F G  ID + F++ A G+SFYN S+ +L  + +   N  
Sbjct: 2   LRRLECVLEPTREKVAETVDRFAGQEIDTDHFLRKASGHSFYNKSDLTLKKIAADPQNAA 61

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            NL+ Y+ +FSDNA+ + + ++F+  + +L+ A LLY++   F+ ++LHPD VP+  M  
Sbjct: 62  KNLQIYVGAFSDNAREVLDKYEFNQQVRKLDSANLLYQVIGRFTDLDLHPDVVPNHNMGY 121

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E LIRRF  + +E A +  TPR+V+ L   LL+ PD       PG++RT+ DP CGTG
Sbjct: 122 IFEELIRRFAEQSNETAGEHFTPREVIKLMVNLLVAPDADALSL-PGVVRTVMDPACGTG 180

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L+ A +H+        +      +GQEL PE+ A+C + ++I+  + +       NI+
Sbjct: 181 GMLSAAEDHILALNPDATVE----VYGQELNPESWAICRSDLMIKGQDPE-------NIR 229

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSM 336
            G++ S D    ++F Y L+NPPFG +W+K K+ VE EHK+ G+ GRFG GLP+I+DGS+
Sbjct: 230 FGNSFSDDGHARRKFDYILANPPFGVEWKKVKEEVEYEHKSLGDAGRFGAGLPRINDGSL 289

Query: 337 LFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           LFL H+ +K++     GG   R AIV + SPLF G A SGES IRRW+LEND +EAIVAL
Sbjct: 290 LFLQHMISKMKPVDVSGGGGSRIAIVFNGSPLFTGAAESGESNIRRWILENDWLEAIVAL 349

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIND------ 446
           P  LF+ T I+TY WIL+NRK  + +GKV L++A D W  +R   G KR+ + D      
Sbjct: 350 PDQLFYNTGISTYFWILTNRKDADHKGKVVLLDARDQWQKMRKSLGDKRKELGDGTRGRP 409

Query: 447 DQRRQILDIYVS----RENGKF-----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           D    I  +Y       ++ +       ++   + FGY+RI V RPL++ F + +  LA 
Sbjct: 410 DHIGDITRLYAEAAQVAKDPEHPLHGKVKVFANQDFGYQRITVERPLKLRFEVTEETLAA 469

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
           L       KL       ++  ++ ++   +P             +  +  L   +   F+
Sbjct: 470 LAEAKPVAKLE--RNEEFVAAVRTLLGSSWPTKS--DAFIALKDAVVSAGLTWPSGAPFV 525

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYID 617
            A     G +DP  + V  V G   PD +L +YENVP  E ++DY  REV PHVP+A+ID
Sbjct: 526 KAVRETIGVRDPEGE-VQKVKGAAEPDGDLRDYENVPLGEDVEDYLKREVLPHVPNAWID 584

Query: 618 KIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                       ++GYEI F R FY Y+P R L +IDAELK +EA+I  LL E+  
Sbjct: 585 HTK--------TKIGYEIPFTRHFYVYKPPRPLAEIDAELKSLEAEIQALLGEVTA 632


>gi|148653130|ref|YP_001280223.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
 gi|148572214|gb|ABQ94273.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
          Length = 806

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 281/809 (34%), Positives = 400/809 (49%), Gaps = 151/809 (18%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    ++ +LA FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+   
Sbjct: 8   TRQYQTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQK 67

Query: 62  FGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                ++ E+       K  G +FYNTS  +L+ +G ++   NL  YI SFS +A+ IF 
Sbjct: 68  ISAMGLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFA 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F   + +L  A LLYK+ + F  ++L P+ V +  M  ++E LIRRF    +E A +
Sbjct: 128 HFKFEEFVGQLNDANLLYKVVQKFQNVDLSPEAVSNYEMGLVFEELIRRFAESSNETAGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 188 HFTPRDIVRLTTSLVFMEDDDALIKD-GIIRTIYDPTAGTGGFLSSGMEYVLELNPN--- 243

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  E          I+ G+TLS D     +F Y L
Sbjct: 244 -AVMRAFGQELNPESYAICKADMLIKGQEVS-------RIKLGNTLSDDQLPADKFDYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           SNPPFG  W+K    ++ EH+  G  GRFGPG P++SDGS+LFL+HL +K+    +    
Sbjct: 296 SNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPVASPKRD 355

Query: 353 -----------------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
                            G R  I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPT
Sbjct: 356 SLELSNRSSEQQDTSVTGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPT 415

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILD 454
           D+F+ T IATY+WIL+N K  ER+GKVQLI+ T+L++ +R   G KR  ++++  + I  
Sbjct: 416 DMFYNTGIATYVWILTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITR 475

Query: 455 IYVSRENGK-----------------------------FSRMLDYRTFGYRRIKVLRPLR 485
            +   E                                 S++ D   FGYRR+ + RPLR
Sbjct: 476 TFGDFEVVDARALDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLR 535

Query: 486 MSFILDKTGLARLE---------------------------------ADITWRKLSPLHQ 512
           +S  +    +  L                                  +DI     + +  
Sbjct: 536 LSAQMSDEAIESLRYAERTYDSVMPALYEKFGEQWTEETYGDFGDQTSDIQVEARAMIKA 595

Query: 513 SFWLDILKPMMQQIYPYGWAESFV----------------------KESIKSNEAKTLKV 550
            F     K + + +    W E                          + +     K   +
Sbjct: 596 DFSELKEKQIKEVLDSKLWREQLAIMNAAKVLQDEIGTEQFDDYNQFDEVFKQAIKDTGL 655

Query: 551 KASKSFIVAFINAFGRKDPRAD-----------------PVTDVNG-----EWIPDTNLT 588
             +       +N    K+P A+                  V D  G     E+  D++L 
Sbjct: 656 DLTAKDKKQILNTITWKNPDAERVVKKSAKEANPLYGAFEVADSKGKAKIVEFETDSDLR 715

Query: 589 EYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           +YEN+P   S      I+ YF REV PHV DA+ID    D  D+EIG VGYEI FNR FY
Sbjct: 716 DYENIPLDPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGVVGYEIPFNRHFY 775

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            Y+P R L +IDA+L  V   I  LL E+
Sbjct: 776 VYEPPRPLSEIDADLDKVSQDIMQLLSEV 804


>gi|260578141|ref|ZP_05846062.1| type I restriction-modification system, M subunit N-6
           adenine-specific DNA methylase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603780|gb|EEW17036.1| type I restriction-modification system, M subunit N-6
           adenine-specific DNA methylase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 689

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 240/698 (34%), Positives = 364/698 (52%), Gaps = 46/698 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    S  + IW  AE L GD+K  ++G V+LPFT+L RL+  L  T+ AV +      
Sbjct: 8   STEKPTSHVSLIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKATSV 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            + I    + K  GY F+NTS ++L TL   + N   NL  Y+ +F+  A+ + E ++F 
Sbjct: 68  PNKIKELRYAKETGYPFWNTSNFTLKTLLDDADNLEQNLTYYVQAFAPAAREVMEAYNFY 127

Query: 122 STIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + I RL+K+ LLY + K F  + + LHPD V +  M  I+E LIRRF    +E A +  T
Sbjct: 128 NVIERLDKSDLLYHVLKEFTSAKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFT 187

Query: 180 PRDVVHLATALLLDPDDALFKE-SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           PR+V+ L   LL +P++ + +  + G + +LYDP  GTGG L+ A  HV D     ++  
Sbjct: 188 PREVISLMVNLLFNPEEDINRLCADGAMASLYDPGVGTGGMLSTAAQHVNDLNESARLE- 246

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL P+T+AV  + ++I+        +  + I  G++L+ D   G RF Y L N
Sbjct: 247 ---VYGQELNPQTYAVAKSDIMIKG-------ERQERIYFGNSLTNDKTAGMRFDYMLCN 296

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----- 352
           PPFG  W+K  D +  E +  G  GRFG G P++SDGS LFL H+ +K++          
Sbjct: 297 PPFGVNWKKYADPILDEAEHKGYQGRFGAGTPRVSDGSFLFLQHMISKMKPYDPMDLVNA 356

Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV + SPLF G AG GESEIRRW+LEND +EAI+ALP  +F+ T I TY+W+LS
Sbjct: 357 AGTRIGIVFNGSPLFTGGAGQGESEIRRWILENDWLEAIIALPDQMFYNTGILTYIWVLS 416

Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           N+K   R+ KVQLI+AT  +  +R   G+KR+ + +     I  IY + +  + SR+ + 
Sbjct: 417 NKKERHRKNKVQLIDATQYFQRMRKPLGEKRKELTETNIADITRIYGAFQETEESRIFET 476

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS--------------PLHQSFWL 516
             F Y  + V RPLR+SF      +  L+    +  L+                 +    
Sbjct: 477 EDFAYHEVVVERPLRLSFQATPDAIESLKQTKPFTDLAMSRKRTEPARTEEIDAGKRVQN 536

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I+  +        +        +     K    K   + +   +   G K+P AD   D
Sbjct: 537 AIIATLEALDAERVYLNRDEFTDLIRESIKKRGEKIGIAALRKIVAGLGTKNPDADICMD 596

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
             G   PD +L + E +P+ E I+ YF REV P+ PDA+ID         +  ++GYEI 
Sbjct: 597 TKGNPEPDADLRDTEQIPFREDIEAYFQREVIPYAPDAWIDH--------DKTKIGYEIP 648

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           F R+FY+Y+      +  AE++ + A I   + ++ +E
Sbjct: 649 FTRYFYKYEELGNPVETLAEIQTLSASIQADITKLFSE 686


>gi|300724722|ref|YP_003714047.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Xenorhabdus nematophila ATCC 19061]
 gi|297631264|emb|CBJ91959.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Xenorhabdus nematophila ATCC 19061]
          Length = 760

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 300/773 (38%), Positives = 403/773 (52%), Gaps = 117/773 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S    A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE  + AV  +Y 
Sbjct: 1   MTNSNFSQT--AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEQNKDAVVAEYE 58

Query: 61  AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                 +  E+     F    G +F+NTS  +L  +G    ++NLE+Y+ SFS +A+ IF
Sbjct: 59  RIKPMKLLEEAQEKFLFRAANGLAFFNTSPMNLGKMGQNGIKDNLENYVQSFSKDAREIF 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F   +  L++A LLYK+ K F+   L PD V +  M  I+E LIRRF    +E A 
Sbjct: 119 EYFNFYEFVGLLDEANLLYKVVKKFATTPLSPDVVSNHEMGLIFEELIRRFAESSNETAG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD+V L T+L+   D+  +   PG IRT+YDPT GTGGFL+  M +V       +
Sbjct: 179 EHFTPRDIVDLTTSLVFTGDEDSYT--PGSIRTIYDPTAGTGGFLSAGMEYVLKGSPLAR 236

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +V  GQEL PE++A+C   MLI+  +          I+ G+TLS D     +F Y 
Sbjct: 237 ----MVAFGQELNPESYAICKGDMLIKGQDVS-------RIKLGNTLSNDQLPADKFDYM 285

Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           LSNPPFG  W+K ++ ++ EH   G  GRFG GLP++SDGS+LFLMHL +K+       G
Sbjct: 286 LSNPPFGVDWKKIEEDIKSEHAVKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRDLRFVDG 345

Query: 355 RA------AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
           RA       I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W
Sbjct: 346 RAIEGSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVW 405

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK---- 463
           ILSN+K  ER+GKVQLINAT+L + +R   G KR  + D+  R I   Y   E       
Sbjct: 406 ILSNKKVPERKGKVQLINATNLSSKMRKSLGSKRHYLTDEAIRAITLNYGQFEEADTQIQ 465

Query: 464 ----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA------------- 500
                      S++ +  TFGYRR+ + RPLR+S  +    +  L               
Sbjct: 466 DGATDSQKPFVSKIFETHTFGYRRLTIERPLRLSVQITDQAVESLRFAPKPFNAVMADIY 525

Query: 501 --------------------------DITWRKLSP------------LHQSFWLDILKPM 522
                                        + +L              L Q   L+  + +
Sbjct: 526 DAFGSEWTEETYGSLNKVEDKIRAMIKKNFPELKEKQIKDLLDSKTWLFQKTLLEKAQKL 585

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT------- 575
              I    + +    E I  +  KT  +K        FI+A   K+P A+PV        
Sbjct: 586 QSIIGSEQFNDFNQFEQILKDALKTAGIKLETKEKKQFIDAITWKNPDAEPVIAKVLKEK 645

Query: 576 -----------DVNGEWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDK 618
                      D   E+  D +L + ENVP   +      I+DYF REV PHV DA+I+ 
Sbjct: 646 AQPLYGAFNYQDKVVEFQQDGDLRDNENVPLDPTTTTTQLIEDYFKREVQPHVADAWINA 705

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              D KD EIG +GYEI FNR FY YQP R L  IDA+L  V A+I  LL+E+
Sbjct: 706 DKRDGKDGEIGMIGYEIPFNRHFYVYQPPRDLAAIDADLDKVSAEIMQLLQEV 758


>gi|238918473|ref|YP_002931987.1| hypothetical protein NT01EI_0518 [Edwardsiella ictaluri 93-146]
 gi|238868041|gb|ACR67752.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 786

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 292/803 (36%), Positives = 412/803 (51%), Gaps = 151/803 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S    A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  ++ AV  KY 
Sbjct: 1   MTNTNFSQT--AAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAESKDAVVAKYD 58

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  E+     ++ +G +F+NTS+  L  +G  + + NLE+Y+ +FS +A+ IFE
Sbjct: 59  ELKTSPLPEEAKQKFLLRASGLAFFNTSKMDLGKMGQNDIKANLENYVQAFSPDAREIFE 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 178

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPN--- 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 235 -AVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLPQDQFDYML 286

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 287 SNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGS 346

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 406

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR--------- 459
           LSN+K  ER+GKVQLI+ ++L   +R   G KR ++ DD  + I   +            
Sbjct: 407 LSNQKAAERKGKVQLIDGSNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVMNATTLE 466

Query: 460 -----------------------ENGK--FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                  E  K   S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 467 ALGLEKAAEQKSNRGRQPATAKAEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +A L                                             A++  +++  L
Sbjct: 527 IATLRFAPKPFNVPMERLYDEFAVQWQAESYGDLSELEAEARAIIKAEFAELKEKQIKDL 586

Query: 511 HQSFWLDILKPMMQQIY------------------PYGWAESFVKESIKSNEAKTLKVKA 552
             S      + +M++                     +   +  +K +IK+   K L  K 
Sbjct: 587 LDSKLWLAQRSLMEKAQQIQAALGTQVGGKTQVSNDFNQFKLTLKGAIKTAGVK-LDAKE 645

Query: 553 SKSFIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVP 594
           +K FI    +A   K+P A+PV                   G   E+  D  L + ENVP
Sbjct: 646 NKQFI----DAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVP 701

Query: 595 YLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
              +      I++Y   EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R
Sbjct: 702 LNPAQSTSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPR 761

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
            L +IDA+L  V A++  LL+E+
Sbjct: 762 PLSEIDADLDAVSAEMMKLLQEV 784


>gi|255320276|ref|ZP_05361461.1| N-6 DNA methylase [Acinetobacter radioresistens SK82]
 gi|255302715|gb|EET81947.1| N-6 DNA methylase [Acinetobacter radioresistens SK82]
          Length = 761

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 279/769 (36%), Positives = 404/769 (52%), Gaps = 114/769 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             + + +A+FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE +++AV  ++     
Sbjct: 3   NNNFSQIASFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHEKVSK 62

Query: 65  SNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            N+  E+  K       G +F+NTS   LS +G ++ + NL +Y+ SFS +A+ IFE F+
Sbjct: 63  LNLPEEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIFEYFN 122

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      L  A LLYK+ + F+  +L P  V +  M  ++E LIRRF    ++ A +  T
Sbjct: 123 FIEFAGLLNDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNDTAGEHFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V L TAL+   DD +  +  G+IRT+YDPT GTGGFL+  M ++ +   +     +
Sbjct: 183 PRDIVRLTTALVFMEDDDVLTKD-GIIRTIYDPTAGTGGFLSSGMEYLHELNPN----AV 237

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  +          I+ G+TLS D  +  +F Y LSNP
Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLSVDQFDYMLSNP 290

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGGRA 356
           PFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+        G R 
Sbjct: 291 PFGVDWKKIEQDIKDEHEQKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSTESGSRI 350

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN+K  
Sbjct: 351 GIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSNKKDA 410

Query: 417 ERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR-------ENGK----- 463
           ER+GKVQLINA++L T +R   G KR  + + +   I   Y          ++G+     
Sbjct: 411 ERKGKVQLINASNLSTKMRKSLGSKRNYLTETEIATITQNYGDFVAVDTLAQDGETEQQK 470

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--------------------- 500
              S++     FGYRR+ + RPLR+S  +  + +  L                       
Sbjct: 471 PFASKIFASHEFGYRRVTIERPLRLSAQITDSAITALRFAPKPLNAVMQSIDAQLDTAFG 530

Query: 501 ----------------------DITWRKLSPLHQSFWLDILKPM-----------MQQIY 527
                                    + +L        LD    +           +Q + 
Sbjct: 531 TAWTAETYGQLQDVALEVRALIKAEFPELKEKDIKEVLDSKIWLFQKALMEKAKALQDVI 590

Query: 528 PYGWAESFV-KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD---------- 576
                + F   + +     K   +K         ++A   K+P A+PV +          
Sbjct: 591 GTEQFDDFNQFDDVLKKALKQTDIKLDAKEKKQLLDAITWKNPEAEPVINKVLKQAENPL 650

Query: 577 --------VNGEWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFID 622
                      E++ D +L + EN+           I+DYF REV  HVPDA+I+    D
Sbjct: 651 YGQFSYQGKVVEFVQDADLRDAENIALNPKVSTTELIEDYFKREVQLHVPDAWINADKRD 710

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EKD EIG VGYEI FNR FY YQP R L +IDA+L  V A+I  LL+E+
Sbjct: 711 EKDSEIGIVGYEIPFNRHFYVYQPPRDLSEIDADLDAVSAEIMHLLQEV 759


>gi|326201378|ref|ZP_08191250.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325988946|gb|EGD49770.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 669

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 254/687 (36%), Positives = 372/687 (54%), Gaps = 36/687 (5%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-K 58
           M++    +     NFIWK A+ L GD+K +++G V+LPFT+L RL+  L  T+  V E  
Sbjct: 1   MSQQNSLNINEYTNFIWKIADLLRGDYKQSEYGDVVLPFTVLCRLDSVLLATKDKVLEID 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116
             +  G  +  + F +  G  FYN S ++   L     N   NL  YI SFS N + I E
Sbjct: 61  KTSNFGDKVKEKLFEQATGMKFYNKSNFTFRKLKDDAPNIAENLRDYITSFSANVQEIME 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            F+  + I RL+KAGLLY I   +   I+L P+ VP+ +M  I+E LIRRF    +E A 
Sbjct: 121 AFNIYAQIERLDKAGLLYMIISKYADEIDLSPEKVPNDLMGYIFEELIRRFSEISNETAG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L  +L+ + D A   E  G + +LYDP  GTGG L    +++        
Sbjct: 181 EHFTPREVIRLMVSLIFNEDGAELSED-GKMTSLYDPAAGTGGMLAIGSDYLKSLNQTIY 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +      +GQEL P T+AVC + MLI+  + D        I +G++ ++D   GK F Y 
Sbjct: 240 VD----CYGQELNPMTYAVCKSDMLIKGQQYD-------RIYRGNSFTEDGTAGKTFSYM 288

Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           L NPPFG +W+K   A+++E++  G  GRFG GLP+ISDGS LFL H+ +K++    GG 
Sbjct: 289 LCNPPFGVEWKKYDKAIKEENEKLGFAGRFGAGLPRISDGSFLFLQHMISKMKPVDEGGS 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AIV + SPLF G AGSGESEIRRW++END +E IVALP  +F+ T I+TY+WI++NRK
Sbjct: 349 RIAIVFNGSPLFTGDAGSGESEIRRWIIENDWLETIVALPDQMFYNTGISTYIWIVTNRK 408

Query: 415 TEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           ++ R+GK+QLINA D    +R   G KR  I D Q  +I+ I+      ++S++ D   F
Sbjct: 409 SKLRQGKIQLINAADFSEKMRKSLGSKRNQITDTQINEIVGIHKDFLPNEYSKIFDNEDF 468

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           GY ++ V RP+R +F   +  +  L      +K      S      +PM Q +       
Sbjct: 469 GYWKVTVERPVRYNFSCCEDRVYSLPIVFQKKKNCTWSWSQNDLDGQPMPQDLIDLKNDL 528

Query: 534 SFVKESIKSNEAKTLKV--------KASK-SFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
             +   + S+E +   +        K +         N    +D       D  G  + +
Sbjct: 529 VALGNEVYSDEKQFKALIAPVVKKHKLTAMQQRTLLYNVLSAEDENGTIYLDAKGNQVAN 588

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L +YE VP    IQ+YF +EV PHVPDA+ID+           + GYEI F R FY+Y
Sbjct: 589 TSLRDYETVPLKTDIQEYFAQEVLPHVPDAWIDE--------SKTKKGYEIPFTRQFYKY 640

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
            P R    I +E+K +E +I   + ++
Sbjct: 641 VPLRASSVILSEIKALEDKIQADIADL 667


>gi|323160770|gb|EFZ46705.1| N-6 DNA Methylase family protein [Escherichia coli E128010]
          Length = 603

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 308/616 (50%), Positives = 411/616 (66%), Gaps = 20/616 (3%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA 
Sbjct: 4   QDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAE 63

Query: 63  GGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             S IDL     ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F F 
Sbjct: 64  KQSGIDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEFKFG 123

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FMTPR
Sbjct: 124 QTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFMTPR 183

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+    V
Sbjct: 184 DAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV----V 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           P GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+NPPF
Sbjct: 239 PFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G KWEK K  VE+EHK  +  GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  IVL
Sbjct: 292 GIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVGIVL 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   R+ 
Sbjct: 352 SGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPRRKN 411

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR++ 
Sbjct: 412 QVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYRKVT 471

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    + +
Sbjct: 472 IQRPLRAKLDITAAGIAAFVQQDTFKKLRPEQQAAWVQYLTDNLG-LQPYEWA----RLA 526

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+   +
Sbjct: 527 VKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFDRDV 586

Query: 600 QDYFVREVSPHVPDAY 615
           +DYF +EV PHVPDA+
Sbjct: 587 EDYFAQEVLPHVPDAF 602


>gi|91225111|ref|ZP_01260333.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Vibrio alginolyticus
           12G01]
 gi|91190054|gb|EAS76325.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Vibrio alginolyticus
           12G01]
          Length = 774

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 295/786 (37%), Positives = 408/786 (51%), Gaps = 129/786 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEP++ AV  +Y 
Sbjct: 1   MTN--NNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKDAVLTEYE 58

Query: 61  AFGGSNIDLESFVK------------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
                 +  E+  K                SF+NTS  +L  +G +N + NLE Y+ SFS
Sbjct: 59  RVSKMGLPEEAAEKFLLRATFEEKDRSKNLSFFNTSPMNLGKMGQSNIKANLEKYVQSFS 118

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +A+ IFE F F   +  LE A LLYK+ K F+  +L P+++ +  M  ++E LIRRF  
Sbjct: 119 KDAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPNSISNHDMGLVFEELIRRFAE 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +E A ++ TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V 
Sbjct: 179 GSNETAGEYFTPRDIVRLTTSLVFMEDDEALTKD-GIIRTIYDPTAGTGGFLSSGMEYVH 237

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +         ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D   
Sbjct: 238 ELNP----KAVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLP 286

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +F Y LSNPPFG  W+K +  ++ EH + G  GRFG GLP++SDGS+LFLMHL +K+ 
Sbjct: 287 ADQFDYMLSNPPFGVDWKKIEGEIKDEHQQKGFDGRFGAGLPRVSDGSLLFLMHLISKMR 346

Query: 348 LPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              N       GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T
Sbjct: 347 DKKNVDNKVIDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNT 406

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE 460
            IATY+W+LSN+K   R+GKVQLIN  +L T +R   G KR  + D++ R I   +   E
Sbjct: 407 GIATYVWVLSNKKDPARKGKVQLINGANLSTKMRKSLGSKRHYLTDEEIRTITKNFGDFE 466

Query: 461 NGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA------ 500
                             S++ D   FGYRR+ + RPLR+S  +    +  L        
Sbjct: 467 EIDTLTKDGVTDNQKHFASKIFDTYQFGYRRLTIERPLRLSAQITDEAVESLRFAPKPFN 526

Query: 501 ---------------DITWRKLSPLHQSFWLDILKPM----MQQIYPYGWAESFVKESIK 541
                          + T+  L+ + +   + I         +QI     ++ ++ +   
Sbjct: 527 AVMQAVFEQFGAEWTEDTYGSLTDVEKEVRVLIKADFPELKEKQIKDVLDSKLWLNQKAL 586

Query: 542 SNEAKTL--------------------------------KVKASKSFIVAFINAFGRKDP 569
            + AK L                                 +K        FI+A   K+ 
Sbjct: 587 MDAAKALQIAVGDSLGGKAQQSDDFNQFELTLKGAFKATGIKFDVKQKKQFIDAVTWKNQ 646

Query: 570 RADPVTDV---------------NG---EWIPDTNLTEYENVPYLES------IQDYFVR 605
            A+PV                   G   E+  D +L + ENVP   S      I+ YF R
Sbjct: 647 DAEPVIKKVLKETAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDPSVSTSTLIESYFKR 706

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV PHV DA+I+    D+KD EIG VGYEI FNR FY YQP R L+ IDA+L  V A I 
Sbjct: 707 EVQPHVADAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRTLEAIDADLDAVSADIM 766

Query: 666 TLLEEM 671
            LL+E+
Sbjct: 767 KLLQEV 772


>gi|261211185|ref|ZP_05925474.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|260839686|gb|EEX66297.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
          Length = 788

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 289/800 (36%), Positives = 402/800 (50%), Gaps = 143/800 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV  +  
Sbjct: 1   MTN--NNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKEAVVIQAE 58

Query: 61  AFGGSNIDLESFVKV-----------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                N+  E+  K+            G +F+NTS  +L  +G ++ + NLE YI SFS 
Sbjct: 59  KIKAMNLPEEAQEKMLFRATQTPDNAKGLTFFNTSPMNLGKMGQSDIKANLERYIQSFSA 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           +A+ IFE F F   +  L  A LLYK+ K F+  +L P  + +  M  ++E LIRRF   
Sbjct: 119 DAREIFEHFKFDEFVGLLNDANLLYKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAES 178

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +
Sbjct: 179 SNETAGEHFTPRDIVRLTTSLVFMEDDEALTKD-GIIRTIYDPTAGTGGFLSSGMEYVHE 237

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D    
Sbjct: 238 LNP----KAVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLPA 286

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +F Y LSNPPFG  W+K +  ++ EH   G  GRFG GLP++SDGS+LFLMHL +K+  
Sbjct: 287 DKFDYMLSNPPFGVDWKKIEGEIKDEHTLKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRD 346

Query: 349 PPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             +       GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T 
Sbjct: 347 THSVDGTVSDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTG 406

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN 461
           IATY+W+LSN+K  ER+G+VQLI+ ++L   +R   G KR ++++D  + I   +   E 
Sbjct: 407 IATYVWVLSNKKAAERKGQVQLIDGSNLCGKMRKSLGSKRNVMSEDDIKTITRTFGDFEV 466

Query: 462 GK-----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                                           S++ D   FGYRR+ + RPLR+S  +  
Sbjct: 467 VDARELDKPAEQKSSRGRQAANPKADTPKTFASKIFDTHEFGYRRLTIERPLRLSAQITD 526

Query: 493 TGLARLEA---------------------DITWRKLSPLHQSFWLDILKPM----MQQIY 527
             +  L                       D T+  L  +       I         +QI 
Sbjct: 527 GAVDSLRFAPKPFNAVMQAVFEQFGTEWDDNTYGTLIEVEAEVRALIKADFPELKEKQIK 586

Query: 528 PYGWAESFVKESIKSNEAKTL--------------------------------KVKASKS 555
               ++ ++ +    ++AK L                                 +K    
Sbjct: 587 DVLDSKLWLSQKTLMDDAKALQVAMGDKLGGKAQQSDDFNQFELTLKGAFKATGIKFDAK 646

Query: 556 FIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLE 597
               F +A   K   A+PV                   G   E+  D +L + ENVP   
Sbjct: 647 QKKQFTDAITWKSQDAEPVIKKVLKEDAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDP 706

Query: 598 S------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           S      I+ YF REV PHV DA+I+    D+KD EIG VGYEI FNR FY YQP R L+
Sbjct: 707 SVSTSTLIESYFKREVQPHVADAWINADKRDDKDAEIGVVGYEIPFNRHFYVYQPPRALE 766

Query: 652 DIDAELKGVEAQIATLLEEM 671
            IDA+L  V   I TLL+E+
Sbjct: 767 AIDADLDAVSKDIMTLLQEV 786


>gi|296116345|ref|ZP_06834961.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977164|gb|EFG83926.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 262/666 (39%), Positives = 370/666 (55%), Gaps = 69/666 (10%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF- 72
            IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   +    ID   F 
Sbjct: 1   MIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWERKGIDPMPFM 60

Query: 73  VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            K AG  F NTS+++L  +     N   NL +YI +FS  A+ IF+ F F+    RL KA
Sbjct: 61  EKAAGLRFVNTSDFTLKGVLDDPDNLAENLSAYINAFSPAARDIFDHFRFTEQTDRLAKA 120

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TPR+V+ L   L
Sbjct: 121 NLLYLVLEKFISFDLSDKAVDNHRMGQVFEELIRKFSEASNETAGEHFTPREVIKLMVNL 180

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +   DD+L       +RT+YDPT GTGG L+ A   + D     +    L   GQEL PE
Sbjct: 181 IFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDAR----LTMFGQELNPE 236

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           ++A+C A MLIR  +         NI+ G+TLS D     +F Y LSNPPFG +W+K + 
Sbjct: 237 SYAICKADMLIRNQDVS-------NIRLGNTLSDDELADHKFDYMLSNPPFGVEWKKVEK 289

Query: 311 AVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           AV  EH K G  GRFGPGLP+ISDGSMLFL+HL +K+ L  +GG R  IVL+ SPLF G 
Sbjct: 290 AVRAEHEKQGYDGRFGPGLPRISDGSMLFLLHLVHKMRLTKDGGARFGIVLNGSPLFTGA 349

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK + R+GKVQLI+A+ 
Sbjct: 350 AGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPQNRKGKVQLIDASS 409

Query: 430 LWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            W  +R   G KR+ + +D    +  ++   +  + + +        R + +        
Sbjct: 410 FWRKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITATDGTQTRAVVM-------- 461

Query: 489 ILDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
                G A  EA    + +L+PL + F              +G+    V+   +  + K 
Sbjct: 462 ----QGEAPPEAPEGGKVRLAPLSRIF----------NNEDFGYQTITVERPQRDGDGKI 507

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
           +  +  K+                       G+ +PD++L + ENVP  E I  YF REV
Sbjct: 508 VLGQRGKA----------------------KGKPMPDSSLRDTENVPLNEDIHAYFKREV 545

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            PH PDA+ID+  I        ++GYEI FNR+FY ++P R L +IDA+LK V  +I  +
Sbjct: 546 LPHAPDAWIDEDKI--------KIGYEIPFNRYFYVFEPPRPLAEIDADLKEVTTKIMAM 597

Query: 668 LEEMAT 673
           L E++ 
Sbjct: 598 LGELSA 603


>gi|21229083|ref|NP_635005.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907637|gb|AAM32677.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 714

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/730 (32%), Positives = 358/730 (49%), Gaps = 77/730 (10%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+E   +   + NFIW  A+D L   +    +  VILP T+LRRL+  LEPT+ AV +  
Sbjct: 1   MSE--NNLNWITNFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMK 58

Query: 60  LAFG--GSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKA 113
            A    G     +   + A  +FYNTS+++L  L S       + + E+Y+  FS N + 
Sbjct: 59  AALDSAGIANQDQPLRQAAEQAFYNTSKFTLRDLKSRSSQQQLKADFEAYLDDFSPNVQD 118

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIY 159
           I ++F+F + I RL KA  L K+ + F  S I L P+ V             +  M  I+
Sbjct: 119 ILDNFEFRNQIPRLSKADALGKLIEKFLDSSINLSPNPVMNGNDSVKHYGLDNHAMGTIF 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+RRF  E +E A +  TPRD V L   L+  P       S  +   LYD  CGTGG 
Sbjct: 179 EELVRRFNEENNEEAGEHWTPRDAVKLMARLIFLPIADQIVSSTYL---LYDGACGTGGM 235

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT A   +      H        +GQE+  ET+A+  A +L++  E D   +L    +  
Sbjct: 236 LTVAEEELKQLAQDHGKQVATHLYGQEINAETYAIAKADLLLKG-EGDAADNLVGGPEY- 293

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKI 331
           STLS D F  ++F + LSNPP+GK W+ D + +  +   K+        G      L + 
Sbjct: 294 STLSNDAFPARKFDFMLSNPPYGKSWKSDLERMGGKDGIKDPRFTIEHAGDPEYSLLTRS 353

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           SDG MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAIV
Sbjct: 354 SDGQMLFLVNMLSKMKHDTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIV 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           ALP ++F+ T IATY+W+L NRK E R+GK+QLI+AT  +  +R N GKK   + ++  +
Sbjct: 414 ALPLNMFYNTGIATYIWVLGNRKPEHRKGKIQLIDATQWYRPLRKNLGKKNCELGEEDIQ 473

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +I D +++ E  + S++     FGY ++ V RPLR++  L    +A      T       
Sbjct: 474 KICDTFLTFEESEQSKIFPNAAFGYWKVTVERPLRLAVDLTPDAIATFRKACT-----EA 528

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            +     ++     Q+ P    +           A    VK +   +    N+  RKD  
Sbjct: 529 GEEQLAALVDKAAVQLGPGLHNDFNDFLPSFEALASKAGVKLTAKRLKLLQNSLSRKDES 588

Query: 571 ADPVTDVNG-------------------------EWIPDTNLTEYENVPY--LESIQDYF 603
           A PV                              E+ PDT L + E VP      I+ + 
Sbjct: 589 AAPVIKKVHKPGKAEADPMHGRFEATVNGKLCVVEYEPDTELRDTEQVPLLEEGGIEAFI 648

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
           +REV PH  DA+ID+           + GYEI+F R+FY+ QP R L++I A++  +E +
Sbjct: 649 LREVLPHASDAWIDE--------SSVKTGYEISFTRYFYKPQPLRSLEEIRADILALEKE 700

Query: 664 IATLLEEMAT 673
              LL+E+  
Sbjct: 701 TEGLLDEIIG 710


>gi|149180786|ref|ZP_01859289.1| type I restriction-modification system methyltransferase subunit
           [Bacillus sp. SG-1]
 gi|148851576|gb|EDL65723.1| type I restriction-modification system methyltransferase subunit
           [Bacillus sp. SG-1]
          Length = 734

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 258/682 (37%), Positives = 379/682 (55%), Gaps = 44/682 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID--L 69
            NFIW  AE L G +K  D+GKVILP  +LRR +C LE T+  V EK+  F     +   
Sbjct: 73  VNFIWTIAEILRGPYKPEDYGKVILPMAVLRRFDCVLEDTKEEVLEKHEQFENLPEESRD 132

Query: 70  ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           E   +VA   F N S+Y  S L   S N  +NL  YI  FS  A+ I + F+F + I ++
Sbjct: 133 EILNRVAQQKFSNISKYDFSKLLIDSDNIADNLRDYINGFSKTARDIIDYFNFDTKIEKM 192

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  LLY + K FS I+LHP+ V +  M  I+E LIRRF  +    A D  TPR+VV L 
Sbjct: 193 ERNDLLYLVVKRFSEIDLHPEVVSNVEMGYIFEELIRRFSEDA--EAGDHYTPREVVRLM 250

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL   D+ +  +  G+ +TLYD   GTGG  + A  ++ +          L    QE+
Sbjct: 251 VNLLFLEDEDILTKQ-GITQTLYDSCAGTGGMGSVAQEYLMELNPT----ADLEFFAQEI 305

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             E++A+C A +LI+  E+       +NI+ G+TLS D F   +F Y ++NPP+G +W+ 
Sbjct: 306 NEESYAICKADILIKGEEA-------RNIRFGNTLSNDAFPEMKFDYLITNPPYGVEWKP 358

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSS 363
            + AV+ E++N G  GRFG GLP+ISDG +LFL HL +K++        G R AI+++ S
Sbjct: 359 AEKAVKAEYENLGYNGRFGAGLPRISDGQLLFLQHLVSKMKPVTEDNPKGSRIAIIMNGS 418

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIRR+L+ENDL+E IV +PTDLF+ T I+TY+WIL+N K+  R+GK+Q
Sbjct: 419 PLFTGDAGSGESEIRRYLIENDLVEGIVGMPTDLFYNTGISTYIWILTNHKSSVRKGKIQ 478

Query: 424 LINATDLWTSIRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           L+NA D +  ++     KR+ ++D   ++I+ +Y    + +  ++ D   FGY++I V R
Sbjct: 479 LVNAVDYYQKMKKSMGSKRKELSDKHLQEIVRLYGDFVDNEKVKIFDNEEFGYQKITVER 538

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY-------------PY 529
           PLR++F +D   +  L    T+  L+   +     I +    +                 
Sbjct: 539 PLRLNFKIDDARIQELHNQTTFVNLAKSKKKGEAGIQETEQGREQQEKIEEALRSIKNDK 598

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
            +       +I     K L +  + + + A +NA  +KD  AD   D  G   PDT+L +
Sbjct: 599 VYKNRAEFTNILKKLFKQLDLTVNATLLKATLNALSQKDETADICIDSKGNPEPDTDLRD 658

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            ENVP  ESI +YF REV PHVP+A+ID            ++GYEI F R FY+Y   R 
Sbjct: 659 TENVPLKESINEYFKREVKPHVPNAWIDDA--------RTKIGYEIPFTRHFYEYTALRS 710

Query: 650 LQDIDAELKGVEAQIATLLEEM 671
            ++I  E+K +E  I   L+++
Sbjct: 711 SEEIKEEIKELEKDILRKLKKV 732


>gi|304315217|ref|YP_003850364.1| type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588676|gb|ADL59051.1| predicted type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
          Length = 671

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/691 (36%), Positives = 388/691 (56%), Gaps = 51/691 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   + +FIW  A+ L   +K  ++ KVILPFT+L+R +C LE ++  V  KY  +   
Sbjct: 2   ENHQDIVSFIWDIADLLRDTYKRNEYQKVILPFTVLKRFDCVLEHSKDDVLRKYNEYKDK 61

Query: 66  NIDLESFVKVA-------GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
             +L+  ++ A          FYN S+Y   +L     +   NL  Y+  FS N K IFE
Sbjct: 62  IENLDPILEAAAVDKDGRKLGFYNYSKYDFKSLLEDPDHIEENLMHYLDCFSPNVKDIFE 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +F   + I +L KA LLY + K FS   ++LHPD + +  M  I+E LIRRF  + +E A
Sbjct: 122 NFYIKTHIEKLSKANLLYLLIKKFSESKVDLHPDKISNHDMGIIFEELIRRFSEQSNEEA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TPRDVV L T LL   +    KE   +I+ +YDP CGTGG LT   N V +     
Sbjct: 182 GQHFTPRDVVKLMTHLLFLENGENLKEK-NLIKKIYDPACGTGGMLTSCKNFVREINDTI 240

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +V +GQE+  E +A+C A MLI+   ++  +  S      STLS D    ++F +
Sbjct: 241 ----DVVLYGQEINEEIYAICKADMLIKGERAENIKGPS------STLSDDQLKDEKFDF 290

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPP+G+KWE+DK+ VEKE + G  GRFG GLP I DG +LF+ H+ +K++   +   
Sbjct: 291 MISNPPYGRKWEQDKEVVEKEAELGFDGRFGAGLPGIKDGQLLFIQHMLSKMK--DDEKS 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A++ + SPLF G AGSGES IRRW++END +E I+ LP  LF+ T+I TY+WIL+N+K
Sbjct: 349 RIAVITNGSPLFTGDAGSGESNIRRWIIENDYLETIIGLPDQLFYNTSIRTYIWILTNQK 408

Query: 415 TEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           + +R GK+QLI+A+  +  +R   GKKR  ++D     IL  Y +       ++ D   F
Sbjct: 409 SPDRIGKIQLIDASSKYVKMRKSLGKKRHQLSDRDIDDILTFYRNFSENDMVKIFDNDDF 468

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDIL 519
           GY ++ V RP++++F + +  L  L +   +RKL+                 +   LDI+
Sbjct: 469 GYVKVTVERPMQLNFEVTEERLQNLYSMNAFRKLAESKNKNIEKRMIEEEKGKKLQLDII 528

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           + + +    Y   + F KE  ++ +      + S +FI   I+A    D  AD VTD  G
Sbjct: 529 RALQKINGHYKNWKDFEKEVKRTLK----NFELSNAFIRNIIHALSEHDETADYVTDTRG 584

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
              PD  L + E +P  E I +YF REV P+ PDA++D+        +  ++GYEINFN+
Sbjct: 585 NIKPDPKLRDTERIPLKEDIDEYFKREVLPYYPDAWMDR--------KKDKIGYEINFNQ 636

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           +FY+Y+P R L+DI+++++ + ++I  L+++
Sbjct: 637 YFYKYKPPRSLEDINSDIQKLTSEILELIKD 667


>gi|52426220|ref|YP_089357.1| HsdM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308272|gb|AAU38772.1| HsdM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 732

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/745 (31%), Positives = 361/745 (48%), Gaps = 87/745 (11%)

Query: 1   MT--EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT        +++++ IW  A  L G ++   + +V+LP  +L R +  L P   A++ K
Sbjct: 1   MTTDNLHTKQSTISSVIWSMANMLRGTYRPPQYRRVMLPLIVLARFDAILAPYTDAMKAK 60

Query: 59  YLAFGGSNIDLES--FVKVA---------GYSFYNTSEYSLSTL--GSTNTRNNLESYIA 105
                            ++A             YNTS Y+L  L     +   NL  Y+ 
Sbjct: 61  ADELQAMGGKAPEGALYEMALTKAADPNRKQPLYNTSGYNLQRLLADQDHIAANLVKYLQ 120

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIY 159
            FS  AK IF+ F+F + I +L+ +  LY +   F      +GI+L P ++ +  M  I+
Sbjct: 121 GFSAKAKDIFDKFEFENEIEKLDSSNRLYAVVSQFQKDLKENGIDLSPQSISNLQMGYIF 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+R+F  + +E A D  TPR+V++L   L+ + D     + P  I ++YDPT GTGG 
Sbjct: 181 EELVRKFNEQANEEAGDHFTPREVINLMVNLIFEEDQQRLSQ-PHAIASIYDPTAGTGGM 239

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--LESDPRRDLSKNIQ 277
           L+++  H+       K    L   GQE   E++A+C A +LI+   + +    D      
Sbjct: 240 LSESEKHLKSYNDSIK----LQLFGQEYNAESYAICCADLLIKDEPISNLVFGDTLGVKN 295

Query: 278 QGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             +T +     D    K+F Y  SNPPFG +W+ ++D +  E K+G  GRFG GLP+I+D
Sbjct: 296 SKNTGTGFVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFAGRFGAGLPRIND 355

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           GS+LFL H+ +K++    GG R A+V + SPLF G AGSGES IRRW++END +EAI+AL
Sbjct: 356 GSLLFLQHMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDWLEAIIAL 415

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQI 452
           P  LF+ T I TY+WI+SN+K++ R+GKVQLI+ T  +  + ++ G KR  ++  Q   +
Sbjct: 416 PDQLFYNTGIYTYVWIVSNKKSDRRKGKVQLIDGTQHYQKMAKSLGDKRNELSPAQIADL 475

Query: 453 LDIYVSRENG-------KF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
             +Y   ++G       KF S++ + + FGY ++ V RPLR++F   +  + +++    +
Sbjct: 476 TRLYADFKDGASGRISTKFCSKIFNNQDFGYLKLTVERPLRLNFQAGQERIEKVKTQTAF 535

Query: 505 RKLSPLHQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKV 550
             L+   +      +K    +              I    +        +     K L  
Sbjct: 536 INLAVSKKRKDEAQIKAEEAEGQRQQQAILAALSTIGDGLYQNRTAFLKLLDKALKGLDF 595

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI----------- 599
           K       A I A   +D  AD   D  G    D+ L + E VP  + I           
Sbjct: 596 KLGAPLKKAIIEALSERDQSADICLDSKGNPEADSQLRDTELVPLPKEITLPLPVDYGEG 655

Query: 600 -------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
                        + Y   EV PHV  A+ID            +VGYEI  NR FYQYQP
Sbjct: 656 KTDELVKQVKAHCEAYLQAEVLPHVDHAWIDY--------SKTKVGYEIPINRHFYQYQP 707

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R L +I AE+  +EA+I  +L  +
Sbjct: 708 PRALDEIKAEISELEAEIMAMLGNV 732


>gi|302037227|ref|YP_003797549.1| putative type I restriction system, N-6 adenine-specific DNA
           methylase HsdM [Candidatus Nitrospira defluvii]
 gi|300605291|emb|CBK41624.1| putative Type I restriction system, N-6 adenine-specific DNA
           methylase HsdM [Candidatus Nitrospira defluvii]
          Length = 714

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 231/727 (31%), Positives = 347/727 (47%), Gaps = 75/727 (10%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             G    +ANFIW  A+D L   +    +  VILP T+LRRL+  LEPT+ AV +  ++ 
Sbjct: 2   SNGDLNWIANFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMKVSL 61

Query: 63  GGSN--IDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFE 116
             +      ++  + AG +FYNTS+++L  L +       R + E+Y+  FS N + I E
Sbjct: 62  DKAKIVHQDQALRQAAGQAFYNTSKFTLKDLKARSSQQQLRADFEAYLDGFSPNVQDILE 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHL 162
            F+F + I RL KA  L  +   F    I L P+ V             +  M  ++E L
Sbjct: 122 KFEFRNQIPRLSKADALGTLINKFLSPDINLSPNPVKNNDGSMKHPGLDNHAMGTVFEEL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +RRF  E +E A +  TPRD V L   L+  P     +    +   LYD  CGTGG LT 
Sbjct: 182 VRRFNEENNEEAGEHWTPRDAVKLMARLIFLPIADQIQSGTYL---LYDGACGTGGMLTV 238

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   +    + H+       +GQE+  ET+A+  A +L++  E D   ++    +  STL
Sbjct: 239 AEETLQQLAAEHRKKVATHLYGQEINAETYAIAKADLLLKG-EGDAADNIVGGPEY-STL 296

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPG-------LPKISDG 334
           + D F  + F + LSNPP+GK W+ D + +  KE                   + + SDG
Sbjct: 297 ANDAFRSREFDFMLSNPPYGKSWKSDLERLGGKEGIKDPRFMIQHAGEAEYSLITRSSDG 356

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            MLFL ++ +K++     G R A V + S LF G AG GES IRRW++END +EAIVALP
Sbjct: 357 QMLFLANMLSKMKHKTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIVALP 416

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T IATY+W+L+NRK   R+GKVQLI+AT  +  +R N GKK   ++D+  R+I 
Sbjct: 417 LNMFYNTGIATYIWVLTNRKPAHRQGKVQLIDATQWFKPLRKNLGKKNCELSDEDIRRIC 476

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           D ++  +  + S++     FGY ++ V RPLR+   LD   L+   A        PL   
Sbjct: 477 DTFIDFKESEQSKIFPNEAFGYWKVTVERPLRLRVDLDPKSLSAFRAACVDEDEEPLANV 536

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
                          +      V+      +A    VK + +      +   ++D +A  
Sbjct: 537 VERVAASLGPGPHLSFNTFMEAVEA-----DANEHGVKLTAARKKLLKDRLAKRDEKAAE 591

Query: 574 VTDVN-------------------------GEWIPDTNLTEYENVPY--LESIQDYFVRE 606
           +                              E+ PDT L + E +P      I  +  RE
Sbjct: 592 IIGKTYKPGKVKPDPLRGLFEATVDGKPCVVEYEPDTELRDTEQIPLLEEGGIAAFIRRE 651

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V PHVPDA+           E  + GYEI+F R+FY+ QP R L+ I A++  +E +   
Sbjct: 652 VLPHVPDAWY--------VPESVKTGYEISFTRYFYKPQPLRSLEAIRADILALEKETEG 703

Query: 667 LLEEMAT 673
           LL E+  
Sbjct: 704 LLGEIIG 710


>gi|114778242|ref|ZP_01453114.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551489|gb|EAU54044.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Mariprofundus
           ferrooxydans PV-1]
          Length = 781

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 292/792 (36%), Positives = 402/792 (50%), Gaps = 137/792 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  +LA +IW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  ++    
Sbjct: 1   MSETPNNLAAYIWSLADLLRGDFKQSQYGRIILPFTLLRRLECVLEVSKEAVLAEHARIQ 60

Query: 64  GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           G  +  E+     +K AG SF+NTS+  LS LG +  ++NLESYI  FS +A+ IFE F 
Sbjct: 61  GMGLPEEAQEKFLLKAAGLSFFNTSKMDLSKLGESGIKDNLESYIQGFSRDAREIFEHFK 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+  I +L  A LLYKI +     +L P  + +  M  ++E LIRRF    +E A +  T
Sbjct: 121 FTEFIGQLSDANLLYKIVQKVRLTDLSPAAISNHDMGKVFEELIRRFAESSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHL T+L+   DD    + PG+IRT+YDPT GTGGFL++ M +V           +
Sbjct: 181 PRDIVHLTTSLVFMEDDDALTK-PGIIRTIYDPTAGTGGFLSEGMEYVEKLNP----QAV 235

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQEL PE++A+C A MLI+  +         NI+ G+TLS D     +F Y LSNP
Sbjct: 236 MRAYGQELNPESYAICKADMLIKGQDVS-------NIKLGNTLSGDQLYADKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG----- 353
           PFG  W+K +  ++ EH   G  GRFGPGLP++SDGS+LFL+HL +KL      G     
Sbjct: 289 PFGVDWKKIEKEIKDEHAIKGFDGRFGPGLPRVSDGSLLFLLHLISKLRPNEGDGHGRPS 348

Query: 354 -----------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                      GR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T 
Sbjct: 349 VAGGTTPGATGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTG 408

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN 461
           IATY+W+LSN+K  ER+GKVQLIN  +L   +R   G KR  ++DD    I   + + E 
Sbjct: 409 IATYVWVLSNKKAAERKGKVQLINGVNLCGKMRKSLGSKRNEMSDDDIATITRAFGAFEV 468

Query: 462 GKF-----------------------------SRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                                           S++     FGYRRI + RPLR SF    
Sbjct: 469 IDARELNKPAEQKSNRGRQSENPKSETPKTFSSKIFASHEFGYRRITIERPLRESFRFSD 528

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA------- 545
             +  L         + +   +     +  +++       E  ++  IKS+ A       
Sbjct: 529 DRIETLRY-APGAPNAAMQWIYGEYGSEWGVEEYGDLTVHEEEIRNRIKSHFAALKEKQI 587

Query: 546 -----------------------------------------KTLKVKASKSFIVAFINAF 564
                                                    K   +K   +      +A 
Sbjct: 588 KDLLDRKTWLAQRAIMQKAKALQQAIGTDQHDDMNTYDAMLKKSGIKLDATEKKQITSAV 647

Query: 565 GRKDPRADPVTDVNG-------------------EWIPDTNLTEYENVPYLES------I 599
             K+P A  V                        E+ PD++L + ENVP   S       
Sbjct: 648 SWKNPEAAKVIKKVHKSAEPNAIYGLFEVDGEVVEYKPDSDLRDNENVPLDPSRPVNETN 707

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           + YF +EV P+V DA+ID    D KD EIG VGYEI FNR FY YQP R L +IDA+L  
Sbjct: 708 EAYFAKEVQPYVLDAWIDACKRDAKDGEIGIVGYEIPFNRHFYIYQPPRDLAEIDADLDK 767

Query: 660 VEAQIATLLEEM 671
           V A+I  LL+E+
Sbjct: 768 VSAEIMQLLQEV 779


>gi|294054711|ref|YP_003548369.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
 gi|293614044|gb|ADE54199.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
          Length = 753

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 290/763 (38%), Positives = 392/763 (51%), Gaps = 107/763 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  +LA +IW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV  K     
Sbjct: 1   MSDTPNNLAAYIWSLADLLRGDFKQSQYGRVILPFTLLRRLECVLEASKPAVLAKADEIK 60

Query: 64  GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
              +  E+     ++  G SF+NTS+  LS LG +    NLESY+ SFS +A+ IFE F 
Sbjct: 61  DKGLSEEAQEKMLLRAGGLSFFNTSKMDLSKLGESGIAANLESYVQSFSKDAREIFEHFK 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS  I  L  A LLYK+ +   G +L P  + +  M  ++E LIR+F    +E A +  T
Sbjct: 121 FSEFIGLLGDANLLYKVVQRVKGADLSPAAISNHDMGLVFEELIRKFAESSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V L T+L+   DD    +  G+IRT+YDPTCGTGGFL+  M +V +         +
Sbjct: 181 PRDIVRLTTSLVFMEDDDALTKQ-GIIRTIYDPTCGTGGFLSSGMEYVHELNP----QAV 235

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F Y LSNP
Sbjct: 236 MRAFGQELNPESYAICKADMLIKGQEVS-------NIKLGNTLSNDQLYADKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +KL     GG R  I
Sbjct: 289 PFGVDWKKIEGDIRTEHTQKGFDGRFGPGLPRVSDGSLLFLLHLLSKLRDASEGGARIGI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W+LSN+K  +R
Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYILEADLLETIVALPTDMFYNTGIATYVWVLSNKKAADR 408

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE--------NGKFS---- 465
           +G+VQLIN   LW  +R   G KRR + D    +I   + S E            S    
Sbjct: 409 KGQVQLINGVHLWDPMRKSLGSKRRQLGDGHIAKITRTFGSFEAIAPQPLDEADASKTFA 468

Query: 466 -RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-------------------------- 498
            ++     FGYRRI + RPLR S+      +  L                          
Sbjct: 469 AKLFKTHEFGYRRITIERPLRESYQFSDERIDTLRFAPKPLNAAMQWVYGEFGADWTDAE 528

Query: 499 -----------EADIT------WRKLSPLHQSFWLDILKPMMQQIYPYGWA--------E 533
                      EADI       + +L        LD    + Q+               +
Sbjct: 529 DCALYGKLREHEADIRAKIKADFPELKEAKIKDLLDAKTWLAQKSILLTARALQAAIGTD 588

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG-------------- 579
                +      K   +K           A   K+P A+ V                   
Sbjct: 589 QHDDMNGYDASLKATGIKLDAKEKKQITAAVSWKNPEAEKVIKKIHKSGKAEPFYGRFAV 648

Query: 580 -----EWIPDTNLTEYENV------PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
                E+ PD +L ++ENV      P     + YF +EV PHVPDA+ID   +D  D++I
Sbjct: 649 DGQIIEYKPDGDLRDFENVALAPSQPVNAVNEAYFQKEVLPHVPDAWIDGTKVDALDEQI 708

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           G VGYEI FNR FYQYQP R L+ ID +L  V   I  LL+E+
Sbjct: 709 GIVGYEIPFNRHFYQYQPPRDLEAIDRDLDAVSGDIMKLLQEV 751


>gi|315180943|gb|ADT87857.1| type I restriction-modification system, M subunit/N-6
           Adenine-specific DNA methylase [Vibrio furnissii NCTC
           11218]
          Length = 789

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 292/801 (36%), Positives = 397/801 (49%), Gaps = 144/801 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEP++ ++  +  
Sbjct: 1   MTN--NNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKESLLAEIP 58

Query: 61  AFGGSNIDL----------------------ESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                N  L                      E+       SF+NTS  +L  +G +N + 
Sbjct: 59  KVEALNEKLVSSGKDPLDENQREKMLLRATFEAKDSTKNLSFFNTSPMNLGKMGQSNIKA 118

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           NLE Y+ SFS +A+ IFE F F   +  LE A LLYK+ K F+  +L P  + +  M  +
Sbjct: 119 NLEKYVQSFSKDAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPSNISNYEMGLV 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E LIRRF    +E A +  TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGG
Sbjct: 179 FEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDDEALTKE-GIIRTIYDPTAGTGG 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           FL+  M +V +         ++   GQEL PE++A+C A MLI+  +          I+ 
Sbjct: 238 FLSSGMEYVYELNP----KAVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKL 286

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSML 337
           G+TLS D     +F Y LSNPPFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+L
Sbjct: 287 GNTLSNDQLPADQFDYMLSNPPFGVDWKKIEGEIKDEHEQKGFDGRFGAGLPRVSDGSLL 346

Query: 338 FLMHLANKLEL-----------PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           FLMHL +K+                 GGR  I+L+ SPLF G AGSGESEIRR++LE DL
Sbjct: 347 FLMHLISKMRPISPIKDKNVDNQVTDGGRIGIILNGSPLFTGSAGSGESEIRRYILEADL 406

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIN 445
           ++AIVALP D+F+ T IATY+W+LSN+K  ER+GKVQLIN  +L + +R   G KR  + 
Sbjct: 407 LDAIVALPNDMFYNTGIATYVWVLSNKKAPERKGKVQLINGANLGSKMRKSLGSKRHFLT 466

Query: 446 DDQRRQILDIYVSRENGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           DD+ R I   +                      S++ D   FGYRR+ + RPLR+S  + 
Sbjct: 467 DDEIRAITKNFGEFAEVDTATSLKESESGKPFASKIFDTHEFGYRRLTIERPLRLSAQIT 526

Query: 492 KTGLARL-------------------------------EADITWRKLSP----------- 509
              +  L                               EA+   R L             
Sbjct: 527 DAAVESLRFAPKPFNGVMQAVYEQFGTEWDDKTYGTLIEAEAEVRALIKADFPELKEKQI 586

Query: 510 ---------LHQSFWLDILKPMMQQIYPYG-----WAESFV-KESIKSNEAKTLKVKASK 554
                    L Q   +D  K +   +          ++ F   E       K   +K   
Sbjct: 587 KEVLDSKLWLSQKALMDDAKALQAAVGDKLGGKTQQSDDFNQFELTLKGAFKATGIKFDV 646

Query: 555 SFIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL 596
                F +A   K+  A+PV                   G   E+  D +L + ENVP  
Sbjct: 647 KQKKQFTDAVTWKNQDAEPVIKKVLKEEAQPLYGAFAYKGKVVEFQQDGDLRDNENVPLD 706

Query: 597 ES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
            S      I+ YF REV PHV DA+I+    D+KD EIG VGYEI FNR FY YQP R L
Sbjct: 707 PSVSTSTLIESYFKREVQPHVADAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRAL 766

Query: 651 QDIDAELKGVEAQIATLLEEM 671
           + IDA+L  V A I  LL+E+
Sbjct: 767 EAIDADLDAVSADIMKLLQEV 787


>gi|120612013|ref|YP_971691.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1]
 gi|120590477|gb|ABM33917.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1]
          Length = 709

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 255/726 (35%), Positives = 380/726 (52%), Gaps = 75/726 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   LANFIW  A+ L G ++   + +V+LP T+LRR +  L P++ AV ++Y    
Sbjct: 1   MSVNFQQLANFIWSVADLLRGPYRPPQYERVMLPLTVLRRFDAVLAPSKEAVLKRYEPLR 60

Query: 64  GSNID-----LESFVKVAG---YSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKA 113
             NI      L +  K  G     F+N S+     L     N   +L  YIA FS+N + 
Sbjct: 61  AKNIPNIDAILNNLAKDEGGTPLGFHNHSQLDFQKLKGDPDNIGRHLADYIAGFSENVRK 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F+F   I +LE++  LY++   F+ I+LHP  V +  M  ++E LIRRF    +E 
Sbjct: 121 IFERFEFDKEIEKLEESNRLYQVVSQFAEIDLHPKRVDNITMGLVFEDLIRRFNEAANET 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   LLL+PD ++  ++ G+I T+ DP CGTGG L +A N +      
Sbjct: 181 AGDHFTPREVIQLMVNLLLEPDTSVLTQA-GVIVTICDPACGTGGMLAEAQNWIRA---- 235

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           H     +   GQ+  P ++AV  + +LI+             +  G+TL+ D F  +RF 
Sbjct: 236 HNEQATVKVFGQDYNPRSYAVAASDLLIKG-------HKDGQVVLGNTLTDDPFPEQRFD 288

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG- 352
           Y L+NPPFG  W+ +K  +++           P   +I+DG++LFL+++ +K +    G 
Sbjct: 289 YLLANPPFGVDWKAEKKVIDRWPNFRGYSGKLP---RINDGALLFLLYMMSKFQEYKPGS 345

Query: 353 ----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R A+V + SPLF G AGSGES+IRRW++E D +EAIVALP  +F+ T I T++W
Sbjct: 346 RDKPGSRTAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIGTFIW 405

Query: 409 ILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +++NRK   R+ K+QLI+A + +T + R+ G KRR ++      +   + + E+ K SR+
Sbjct: 406 VVTNRKASHRKSKIQLIDARERYTPMKRSLGDKRRYLDQAALDDVTREHGALEDSKTSRV 465

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQI 526
            D   FGYRRI VLRPLR+ F +      R        +L    Q+   D+  +P++   
Sbjct: 466 FDNADFGYRRITVLRPLRLRFQITDETRERFLNVCP--ELFDALQAVQEDLGTEPLLDWN 523

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--------- 577
             +G  +   K ++  N     K     +    F + F   DP A PV D          
Sbjct: 524 QAWGAVQQVFK-ALPDNIDGWAKGAKGTAQKKIFRDCFTVVDPEAAPVVDKHHKIEPLDC 582

Query: 578 ----------------------------NG---EWIPDTNLTEYENVPYLESIQDYFVRE 606
                                        G   E++PD  L + EN+P  E I  Y +RE
Sbjct: 583 AALFPGQTLPADLCKDDLYELLGLHADGKGKHIEYVPDPALKDAENIPLKEDIVSYVLRE 642

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V  +VPDA+ID+  +DE+D  IG+VGYEINFNR F+QYQP R L +IDAEL  VE +I  
Sbjct: 643 VRTYVPDAWIDRATLDEQDGGIGKVGYEINFNRVFFQYQPPRPLHEIDAELAEVEKRILD 702

Query: 667 LLEEMA 672
           LL E+ 
Sbjct: 703 LLREVT 708


>gi|209523388|ref|ZP_03271943.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209496130|gb|EDZ96430.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 679

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/704 (35%), Positives = 374/704 (53%), Gaps = 65/704 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY  +
Sbjct: 6   NTTVDHHQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKQNVLDKYQQY 65

Query: 63  GGSNIDLE---SFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFED 117
                D          AG  F+N SE++   L     N   +L SYI SFS N + IFE 
Sbjct: 66  KDRLQDKALDSMLDTAAGQRFHNRSEFTFEKLKGDPNNLDQHLVSYINSFSQNIREIFER 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A D 
Sbjct: 126 FEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAGDH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   +L DPDD +  +   +IR L DP CGTGG L++A N++       +  
Sbjct: 186 FTPREVIGLMVDILFDPDDDILTQ--PVIRKLLDPACGTGGMLSEAQNYLRKNNKDAQ-- 241

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y L+
Sbjct: 242 --LYVFGQDFNPRAYAIAASDLLIKDNEQSA-------IQFGDSLTDDQYSGETFDYFLA 292

Query: 298 NPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL----PPNG 352
           NPPF   W+K +  V++EH+  G  GRFG GLP+++DGS+LFL H  +K E         
Sbjct: 293 NPPFRVYWKKQQKEVKREHEKLGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSDKK 352

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R AIV + SPLF G AGSGESEIR+W++E+D +EAIVALP  +F+ T I TYLWI++N
Sbjct: 353 GSRLAIVFNGSPLFTGGAGSGESEIRKWIIESDWLEAIVALPEQMFYNTGIGTYLWIVTN 412

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y      + S++    
Sbjct: 413 RKQKHRKGKIQLIDARQRWQPMRRSLGDKRRYMGEEDIAIVVQEYGHFIETETSKIFANE 472

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            FGY R+ + RPLR+ + +D      ++  + +    P      LD +K + +Q+     
Sbjct: 473 DFGYHRVPIERPLRLLYQMD------VDRKLRFLDAVP----HLLDDVKAIDKQLGREPR 522

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGEW------ 581
            +    + +  +  K    +  K+    F + F  ++P A+PV         E       
Sbjct: 523 PDWNEFDRLMKDLLKQRGSRWKKAEKKLFRDVFTEREPEAEPVILKEQKAKDEPYARVWG 582

Query: 582 -------------IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
                         PD+ L ++ENV   + +  YF+ EV PHV DA+         D   
Sbjct: 583 WFPVAGKKIERMYEPDSTLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADGTK 634

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            +  YEINFNR+FY+Y P R L +IDA++K +E +I  LL E+ 
Sbjct: 635 IKSAYEINFNRYFYKYTPPRPLAEIDADIKQMEQEIIKLLREVT 678


>gi|119491620|ref|ZP_01623492.1| type I restriction-modification system methyltransferase subunit
           [Lyngbya sp. PCC 8106]
 gi|119453349|gb|EAW34513.1| type I restriction-modification system methyltransferase subunit
           [Lyngbya sp. PCC 8106]
          Length = 694

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 260/688 (37%), Positives = 377/688 (54%), Gaps = 52/688 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+ F  +    A+FIWK A+ L G+++  ++  VILP  +LRRL+ A+E TR AVR+++ 
Sbjct: 1   MSNFQAT----ADFIWKIADLLRGNYQRREYPDVILPMVVLRRLDQAMENTRQAVRDEWN 56

Query: 61  AFGGSNIDLESFVKVAGYS--FYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116
            + G   +L+  ++ A      YNTSEY    L     N   NL +Y+  FS +   I E
Sbjct: 57  KYHGKLENLDPLLRAAAGDSPVYNTSEYYWRRLLDDRPNLAQNLINYLNGFSPDVLDIIE 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYEHLIRRFGSEVS 171
            FDF   ++RL  A LL  +   F+ I+LHP       V +  M  I+EHLI RF  + +
Sbjct: 117 KFDFRRQVSRLNTANLLPILFDEFTKIDLHPPREDGTGVDNLEMGRIFEHLIYRFNQDNN 176

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-C 230
           E A +  TPR+V+ L   LL   DD      P  I T+YDP CGTGG LT+A  ++ D  
Sbjct: 177 ETAGEHFTPREVIRLMVRLLFPEDDPTLH--PDNILTIYDPACGTGGMLTEAKEYIHDIQ 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              ++    +   GQE+ P   AV  +  L++  +        + I  G++ S+D +  +
Sbjct: 235 TRKYQKIGQVHLFGQEINPTAFAVAKSDFLLKGED-------PRRITFGNSFSEDGYPER 287

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           RF Y LSNPPFG  W+K +  +++E++  G  GRFG GLP+I+DGS+LFL H+ +  +  
Sbjct: 288 RFRYMLSNPPFGVDWKKVQYIIKREYETQGFDGRFGAGLPRINDGSLLFLQHILS--KRA 345

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
                R  IV + SPLF G AGSGES IRRW++END +E IVALP  LF+ T I+TYLW+
Sbjct: 346 KEEPSRTVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEGIVALPDQLFYNTGISTYLWV 405

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           L+NRK+ +R+GK+QL+NA + +  +R   G KR  I ++Q  +I +IY +   G    + 
Sbjct: 406 LNNRKSNKRKGKIQLVNAVNFYQKMRKSLGNKRNEITEEQYNEIANIYHAFSTGDNCLIF 465

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ----------SFWLDI 518
           D   FGYRRIKV RPLR++F      LARL     +  L+   +              D 
Sbjct: 466 DNEDFGYRRIKVERPLRLNFSAAPERLARLPEQSGFAALAESKKKKEEDQKADIEAGKDW 525

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLK-VKASKSFIVAFINAFGRKDPRADPVTDV 577
            + ++  +       +   +       KTLK  K  +S   A + A   +D  A+PV   
Sbjct: 526 QERIINALKQLPVKVTTDPKQFLPLLDKTLKPFKLKESVKNAILKALTERDENAEPVPAK 585

Query: 578 NGE-WIPDTNLTEYENVPY-------------LESIQDYFVREVSPHVPDAYIDKIFIDE 623
            GE + PD  L +YENVP               E++ DYF REV P++ DA+ID+ F DE
Sbjct: 586 KGEGYEPDPELRDYENVPLQWAPSIYDENVPLKENVYDYFAREVKPYISDAWIDEKFKDE 645

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           KD + G +GYEI+FNR+FY+YQP   L+
Sbjct: 646 KDGKTGLIGYEISFNRYFYKYQPPEPLE 673


>gi|284052080|ref|ZP_06382290.1| type I restriction-modification system methyltransferase subunit
           [Arthrospira platensis str. Paraca]
 gi|291566233|dbj|BAI88505.1| type I restriction-modification system M subunit [Arthrospira
           platensis NIES-39]
          Length = 681

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 376/707 (53%), Gaps = 67/707 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY   
Sbjct: 6   NTTVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQC 65

Query: 63  GGSNIDLE---SFVKVAG--YSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115
                D        K AG  + F+N SE++   L     N   +L +YI SFS N + IF
Sbjct: 66  KDRFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIF 125

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A 
Sbjct: 126 ERFEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAG 185

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D  TPR+V+ L   +L DPDD +  +   +I  L DP CGTGG L+++ N++ +     +
Sbjct: 186 DHFTPREVIRLMVDILFDPDDDILTK--PVICRLLDPACGTGGMLSESQNYLRENNKEAQ 243

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y 
Sbjct: 244 LW----VFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYF 292

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL----PP 350
           L+NPPFG  W+K +  V++EH K G  GRFG GLP+++DGS+LFL H  +K E       
Sbjct: 293 LANPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSD 352

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP  +F+ T I TY+WI+
Sbjct: 353 KKGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIV 412

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +NRK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y +    + S++  
Sbjct: 413 TNRKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFK 472

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              FGY R+ + RPLR+ + +D     R    +             L+ ++ + +Q+   
Sbjct: 473 NEDFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPH----------LLEDVQAIDKQLGRE 522

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE--------- 580
              +    + + ++  K    +  K+    F + F  ++P A+PV     +         
Sbjct: 523 PRPDWNEFDRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDEPYARV 582

Query: 581 --------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
                         + PD+ L ++ENV   + +  YF+ EV PHV DA+         D 
Sbjct: 583 WGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADG 634

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R  +EINFNR+FY+Y P R L +ID+++K +E +I  LL E+  
Sbjct: 635 AKIRSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 681


>gi|310639247|ref|YP_003944006.1| type I restriction-modification system methyltransferase subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308752823|gb|ADO43967.1| type I restriction-modification system methyltransferase subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 667

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/692 (33%), Positives = 374/692 (54%), Gaps = 52/692 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + + LAN IW+ A+ L G ++   + +V+LP  +LRR +C L  T+  V  ++    G 
Sbjct: 2   ATHSDLANLIWQIADLLRGPYRPPQYERVMLPLVVLRRFDCVLADTKQKVLAEFERRKGG 61

Query: 66  NIDLESFV----KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
            ++ ++      K +G+ F+N S  +  T+   +++   +L+SYI+ FS N + IFE F+
Sbjct: 62  KLEDDALDRMLNKASGHRFHNRSSMTFETMIGDTSDLVGHLQSYISGFSANVRRIFEYFE 121

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++ I ++ +A +LY + K F  ++LHPD V +  M  ++E+LIRRF    +E A D  T
Sbjct: 122 FTNEIEKMNEANILYLVLKEFLKVDLHPDRVKNDQMGLVFENLIRRFNELANETAGDHFT 181

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+HL   LL    D +  + PG +  + DP CGTGG L +A  ++ D     K    
Sbjct: 182 PREVIHLMVDLLFMDADDVLSK-PGTVMRMLDPACGTGGMLAEAQRYMRDHHKEAK---- 236

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +GQ+      A   + ML+++++ +   +   N+Q G + + D F G+ F Y ++NP
Sbjct: 237 LYVYGQDYNKRAFATAASDMLMKQVDHNGGGE---NVQFGDSFTDDKFEGQTFDYFIANP 293

Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GG 354
           PFG  W+K +  + + H+   +   +  GLP+++DGS+LFL H+ +K +         G 
Sbjct: 294 PFGVDWKKQQKEIVRRHEKAPQDSPWSAGLPRVNDGSLLFLQHMISKFDDVDPKAQKYGS 353

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAAIV S SPLF G AG GES IR+W++E D++EAIVALP  +F+ T I TY+WI++N K
Sbjct: 354 RAAIVFSGSPLFTGGAGGGESNIRKWIIERDMLEAIVALPEQMFYNTGIGTYIWIVTNNK 413

Query: 415 TEERRGKVQLINATDLWTSI-RNEGKKRRII-------------NDDQRRQILDIYVSRE 460
              R+G +QL++A D++  + R++G KRR I               DQ  +I+ +Y S  
Sbjct: 414 PSHRKGDIQLVDARDIYMPMGRSQGDKRRKIGAGKAPEGDDRPDEPDQIAEIVRLYGSFA 473

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
               S++ D   FGY R+ + RPLR+ + +     AR         L  +         +
Sbjct: 474 PNSKSKIFDNAEFGYTRVTIERPLRLRYRMTVEDKARFLDAAPHL-LDDIQAIDKALGRE 532

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
             +     +G  E  +K+          + +     +  F N F  KD +A+ V    G 
Sbjct: 533 MELDWNKVWGSIEKLLKKR---------ESRWRAPEVKLFRNVFTVKDAKAERVKSGKG- 582

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           +  D +L ++EN+P  E +  YF REV PHVPDA++D+           +VGYEINFNR 
Sbjct: 583 FEADPDLRDFENIPLKEDVDAYFAREVLPHVPDAWMDR--------SKDKVGYEINFNRH 634

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           FYQ+   RKL +IDA+LK  E +I  LL E+ 
Sbjct: 635 FYQFTTPRKLVEIDADLKKAEDEILRLLREVT 666


>gi|78773871|gb|ABB51221.1| type I RM system M subunit [Arthrospira platensis]
          Length = 688

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 376/707 (53%), Gaps = 67/707 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY   
Sbjct: 13  NTTVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQC 72

Query: 63  GGSNIDLE---SFVKVAG--YSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115
                D        K AG  + F+N SE++   L     N   +L +YI SFS N + IF
Sbjct: 73  KDRFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIF 132

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A 
Sbjct: 133 ERFEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAG 192

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D  TPR+V+ L   +L DPDD +  +   +I  L DP CGTGG L+++ N++ +     +
Sbjct: 193 DHFTPREVIRLMVDILFDPDDDILTK--PVICRLLDPACGTGGMLSESQNYLRENNKEAQ 250

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y 
Sbjct: 251 LW----VFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYF 299

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL----PP 350
           L+NPPFG  W+K +  V++EH K G  GRFG GLP+++DGS+LFL H  +K E       
Sbjct: 300 LANPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSD 359

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP  +F+ T I TY+WI+
Sbjct: 360 KKGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIV 419

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +NRK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y +    + S++  
Sbjct: 420 TNRKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFK 479

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              FGY R+ + RPLR+ + +D     R    +             L+ ++ + +Q+   
Sbjct: 480 NEDFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPH----------LLEDVQAIDKQLGRE 529

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE--------- 580
              +    + + ++  K    +  K+    F + F  ++P A+PV     +         
Sbjct: 530 PRPDWNEFDRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDEPYARV 589

Query: 581 --------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
                         + PD+ L ++ENV   + +  YF+ EV PHV DA+         D 
Sbjct: 590 WGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADG 641

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R  +EINFNR+FY+Y P R L +ID+++K +E +I  LL E+  
Sbjct: 642 AKIRSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 688


>gi|294789184|ref|ZP_06754423.1| type I site-specific deoxyribonuclease (modification subunit)
           [Simonsiella muelleri ATCC 29453]
 gi|294482925|gb|EFG30613.1| type I site-specific deoxyribonuclease (modification subunit)
           [Simonsiella muelleri ATCC 29453]
          Length = 726

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/733 (31%), Positives = 361/733 (49%), Gaps = 76/733 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T+     ++L + +W  A  L G ++   + KV+LP  +L R +  L      ++  +  
Sbjct: 6   TQQHPHHSTLVSILWNIANGLRGTYRPPQYRKVMLPLIVLARFDAILANHTDQMKTVFDE 65

Query: 62  FGG------SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
                         E   +    + YN S ++L+ L     + R N   YI  FS  AK 
Sbjct: 66  NKNLPAVILDKKLTEIIGQNRKQTLYNVSGFNLARLLEDPDHIRANCSKYINGFSAKAKD 125

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHLIRRFG 167
           IF+ F+F + + +L++A  L+KI ++F       G+ L PD + +  M  ++E LIR+F 
Sbjct: 126 IFDKFEFETELDKLDEANRLFKILQDFIGDLNKHGLTLSPDVISNIQMGYLFEDLIRKFN 185

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            + +E A D  TPR+V+ L   +    D     +  G+ RT+YDPTCGTGG L+++   +
Sbjct: 186 EQANEEAGDHFTPREVIRLMVNIAFAEDHEEL-QKAGVHRTIYDPTCGTGGMLSESEKEL 244

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI------RRLESDPRRDLSKNIQQGST 281
                       L  +GQE   E++A+C A +LI        +  D     +   +    
Sbjct: 245 KGFNQ----AISLGLYGQEYNAESYAICCADLLIKDEPAEHIIFGDTLGVQNAKDKGNGF 300

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLM 340
              D   GKRF Y  +NPPFG +W+  +D V+KEH++ G  GRFG GLP+I+DGS+LFL 
Sbjct: 301 TPNDGHQGKRFDYMFANPPFGVEWKIQEDFVKKEHQDQGFNGRFGAGLPRINDGSLLFLQ 360

Query: 341 HLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           H+ +K++ P     G R A+V + SPLF G AGSGES IRR+++ENDL+EA++ALP  +F
Sbjct: 361 HMISKMKQPKTDEQGSRIAVVFNGSPLFTGDAGSGESNIRRYVIENDLLEAVIALPDQMF 420

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T I TY+WILSN+K+E+R+GK+QLINAT  +  + ++ G KR  +++     I  +Y 
Sbjct: 421 YNTGIYTYIWILSNKKSEKRQGKIQLINATGYFQKMQKSLGNKRNELSEQHITDITQLYT 480

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
                K S++ + + F Y +I V RPLR++F      + +L A   +  L+   +     
Sbjct: 481 DFIETKDSKIFNNQDFAYLKITVERPLRLNFQASPERIEKLWAQTAFVNLAKSKKIKDET 540

Query: 518 ILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
            +K   +               +    +        + +   K L  K S S   A + A
Sbjct: 541 QIKAEEETGKAQQQAIINTLNGLDNTLYTSRAQFLKVLNPALKGLSFKVSGSLQKAILEA 600

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVP-------------------------YLES 598
              +D  AD  TD  G   PD  L + E VP                            +
Sbjct: 601 LSERDQTADICTDSKGNPEPDPQLRDSELVPMPSEMAFPLSLGYDNETNLSDLLTALRPT 660

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           +Q Y   EV PHV DA++D+           ++G+EI  NR FY+YQP R L +I +E+ 
Sbjct: 661 VQAYMTAEVLPHVQDAWVDE--------SKTKLGFEIPINRHFYEYQPPRDLAEIKSEIV 712

Query: 659 GVEAQIATLLEEM 671
            +E +I  +L ++
Sbjct: 713 ALEQEIMAMLGKL 725


>gi|300112914|ref|YP_003759489.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299538851|gb|ADJ27168.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 722

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/735 (32%), Positives = 353/735 (48%), Gaps = 89/735 (12%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGG 64
             S+ NFIW  A+D L   +    +  VILP T++RRL+  LEPT+  V   +  L   G
Sbjct: 6   HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPTKEKVLVMKAQLDEAG 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDF 120
                 +  + AG +FYN S ++L  L S       R + E+Y+  FS N + I + F F
Sbjct: 66  IANQHAALCQAAGEAFYNVSPFTLRDLKSRAKLQQLRADFEAYLDGFSPNVQEILDKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRF 166
            + I  L +A +L  +   F  + I L P  V             +  M  I+E LIRRF
Sbjct: 126 RNQIPTLIEADILGHLIDKFLDTRINLSPRPVQDMDGNERLPALDNHAMGTIFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P     +    +   +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVRLMADLIFLPIADEIESGTYL---VYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-LSKD 285
           +A+  + H     +   GQE++PET+A+  A +L++          ++NI+ GST  S D
Sbjct: 243 LAELAASHGKEVSIHLFGQEVQPETYAIAKADLLLKG-----EGGGAENIKYGSTLSSSD 297

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSML 337
            F  + F + LSNPP+GK W+ D D +  + + K+        G      + + SDG ++
Sbjct: 298 PFLSQEFDFMLSNPPYGKSWKSDVDRLGGKDDIKDLRFVTHHGGDPAYKMITRSSDGQLM 357

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++   K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++
Sbjct: 358 FLVNNLAKMKPTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENM 417

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+NRK E+RRGKVQLI+A++ +  + RN GKK R + ++  R I D+ 
Sbjct: 418 FYNTGIATYIWVLTNRKREKRRGKVQLIDASEWFVPLRRNLGKKNRELTEEHIRAICDLV 477

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           V+    + S++     FGY ++ V RPLR++  L    L R E      K  PL     L
Sbjct: 478 VTPVETEQSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERTCAKSKEEPLAN---L 534

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
                 +    P+    +F+       +AK   +K +        +        A PV  
Sbjct: 535 ARRVAGVLGAGPHLDFNAFMDAC--GADAKAHGIKLTAKRKKLLQSELCDTREDAAPVLK 592

Query: 577 VNG-----------------------------------EWIPDTNLTEYENVPY--LESI 599
                                                 E+ PDT L + E VP      I
Sbjct: 593 KVHRPDKATPDPIHGLFKIELPSPRGRGAGGEGKIHVVEFEPDTALRDSEQVPLLEEGGI 652

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           + +F REV P+ PDA+ID   I        ++GYEI+F   FY+  P R L+ I A++  
Sbjct: 653 EAFFRREVLPYTPDAWIDPAKI--------QIGYEISFTHHFYKPAPMRTLEAIKADIYA 704

Query: 660 VEAQIATLLEEMATE 674
           +E +   LLE++  E
Sbjct: 705 LEQETEGLLEQIVGE 719


>gi|322420421|ref|YP_004199644.1| N-6 DNA methylase [Geobacter sp. M18]
 gi|320126808|gb|ADW14368.1| N-6 DNA methylase [Geobacter sp. M18]
          Length = 710

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/724 (32%), Positives = 350/724 (48%), Gaps = 78/724 (10%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGG 64
             S+ NFIW  A+D L   +    +  VILP T++RRL+  LEP++  V   +K L   G
Sbjct: 6   HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAG 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFEDFDF 120
                 +  + AG +FYN S ++L  L +   +     + E+Y+  FS N + I + F F
Sbjct: 66  IANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRF 166
            + I  L +A +L  + + F    + L P  V             +  M  I+E LIRRF
Sbjct: 126 RNQIPTLIEADILGHLIEKFLDGRVNLSPKPVQDVDGNEILPALDNHSMGTIFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P     +    +   +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYL---VYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+    H     +   GQE++PET+A+  A +L++   ++       N++ GSTLS D 
Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAE-----NMKYGSTLSSDA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLF 338
           F  + F + LSNPP+GK W+ D + +  + + K+        G      + + SDG ++F
Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDIKDPRFVTQHGGDPEYKMITRSSDGQLMF 357

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L++  +K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++F
Sbjct: 358 LVNKLSKMKHTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENMF 417

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T IATY+W+L+NRK++ RRGKVQLI+AT+ +  + RN GKK    +++  R I D+ V
Sbjct: 418 YNTGIATYIWVLTNRKSDTRRGKVQLIDATEWYVPLRRNLGKKNCEFSEEHIRAICDLVV 477

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           +      S++     FGY ++ V RPLR++  L    L R E      K  PL     L 
Sbjct: 478 NPVETDKSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERACAKAKEEPLAN---LA 534

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                   + P+    +F+        A    VK +        +        A PV   
Sbjct: 535 SRVAEALGVGPHLDFNAFMNAVEAD--ADKHGVKLTAKRKKLLQSDLCDTREDAAPVLKK 592

Query: 578 NG-------------------------EWIPDTNLTEYENVPY--LESIQDYFVREVSPH 610
                                      E+ PDT L + E VP      I+ +  REV P+
Sbjct: 593 VHKPGKATPDPIHGLVEAEVNGKTCVVEYEPDTALRDTEQVPLLEEGGIEAFIRREVLPY 652

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
            PDA+ID         +   VGYEI+F R FY+  P R L +I A++  +E +   LLE+
Sbjct: 653 TPDAWIDP--------DKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQ 704

Query: 671 MATE 674
           +  E
Sbjct: 705 IVGE 708


>gi|78356904|ref|YP_388353.1| type I restriction-modification system specificity subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219309|gb|ABB38658.1| type I restriction-modification system specificity subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 710

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/724 (31%), Positives = 350/724 (48%), Gaps = 78/724 (10%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGG 64
             S+ NFIW  A+D L   +    +  VILP T++RRL+  LEP++  V   +K L   G
Sbjct: 6   HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAG 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFEDFDF 120
                 +  + AG +FYN S ++L  L +   +     + E+Y+  FS N + I + F F
Sbjct: 66  IANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRF 166
            + I  L +A +L  + + F    + L P  V             +  M  I+E LIRRF
Sbjct: 126 RNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDVDGNELLPALDNHSMGTIFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P     +    +   +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYL---VYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+    H     +   GQE++PET+A+  A +L++   ++       N++ GSTLS D 
Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAE-----NMKYGSTLSSDA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFG------PGLPKISDGSMLF 338
           F  + F + LSNPP+GK W+ D + +  + + K+               + + SDG ++F
Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDIKDPRFVTQHANDSEYKMITRSSDGQLMF 357

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L++  +K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++F
Sbjct: 358 LVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENMF 417

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYV 457
           + T IATY+W+L+NRK++ R+GKVQLI+A++ +  + RN GKK   ++++Q + I+D+ V
Sbjct: 418 YNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLVV 477

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           +    + S++     FGY ++ V RPLR++  L    L R +      K  PL +     
Sbjct: 478 NPRETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLARRV 537

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                      +          +   +A    VK +                 A PV   
Sbjct: 538 AEALGAGPHIDFNAFMD-----VAHADADKHGVKLTAKRKKLLQGELCDTREDAAPVLKK 592

Query: 578 NG-------------------------EWIPDTNLTEYENVPYLES--IQDYFVREVSPH 610
                                      E+ PDT L + E VP LE   I+ +F REV P+
Sbjct: 593 VHKPGKATPDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGGIEAFFRREVLPY 652

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
             DA+ID             VGYEI+F R FY+  P R L +I A++  +E +   LLE+
Sbjct: 653 TSDAWIDPGK--------TLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQ 704

Query: 671 MATE 674
           +  E
Sbjct: 705 IVGE 708


>gi|229163474|ref|ZP_04291425.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus R309803]
 gi|228620043|gb|EEK76918.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus R309803]
          Length = 679

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/699 (33%), Positives = 354/699 (50%), Gaps = 60/699 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
                 NFIWKNAE L G +K  ++ +V+LP  +LRR +C L+PT+  V EK        
Sbjct: 5   QNNEFVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQEVLEKTKVVKHDA 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           I      K+ GY F N S++   TL     N   NL +YI  FS N + IFE F F + I
Sbjct: 65  I----LNKITGYDFNNISQFDFQTLLKDPDNIAANLRNYIQGFSVNIRMIFERFGFDTQI 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++++  LLY + + FSGI+L    V +  M  I+E  IRRF       A D  TPR+V+
Sbjct: 121 QKMDEHNLLYSVIQLFSGIDLSIQRVSNIQMGYIFEEFIRRFSENA--EAGDHYTPREVI 178

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+L+ D +   +   +++ + D  CGTGG L++A  ++ +   + ++       G
Sbjct: 179 QLMVNLVLNEDQSELMQEGKIVQ-IGDFACGTGGMLSEATRYIQELNPNAQVE----VFG 233

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ P+++A+  A +LI+   +      +      S    D     +  Y L NPPFG  
Sbjct: 234 QEINPKSYAIACADLLIKGQNAGHIAFGN------SLTDADGHKDLQVRYALMNPPFGVD 287

Query: 305 WEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+   +++++EH+  G+ GR+G GLP+ SDGS+LFL H+ +K++     G R AI+ + S
Sbjct: 288 WKHYGESIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRD-EKGSRMAIIFNGS 346

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------ 417
           PLF G AGSGESEIRR ++E DL+E IVALP  LF+ T I+TY+WILSNRK ++      
Sbjct: 347 PLFTGDAGSGESEIRRRIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKNDDLIKGAV 406

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+GK+QL++AT     +R   G KR  I + Q  +I  IY   +  K+ ++ D   FGYR
Sbjct: 407 RKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAEITRIYGEFKENKYCKIFDLEDFGYR 466

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA---- 532
           +I V +PL+++F++    +  L  +  + KL        L   K                
Sbjct: 467 KITVEQPLQLNFMISPERIENLYNEAAYAKLYDEEAYTELSRKKDKKPADMKKLEKWEEG 526

Query: 533 -----------ESFVKESIKSNEAKTLKV---------KASKSFIVAFINAFGRKDPRAD 572
                      +  + +++  N    LKV         +       A       +D  AD
Sbjct: 527 KQLQEKILAILDENISDTLYKNREDFLKVLKPLFNNVPEVKAGLWKAIYMGLSERDETAD 586

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
                 G+   D  L + EN+P  E IQ+YF REV PHVPDA+ID+           ++G
Sbjct: 587 VCESAKGKVEADPMLRDTENIPLKEDIQEYFEREVLPHVPDAWIDE--------SKTKIG 638

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           YEI F R+FY+Y+       +      +E  I  LL+++
Sbjct: 639 YEIPFTRYFYKYEQLESSVILKQRAIELEESIQELLKKV 677


>gi|309812882|ref|ZP_07706614.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
 gi|308433160|gb|EFP57060.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
          Length = 650

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/687 (33%), Positives = 359/687 (52%), Gaps = 74/687 (10%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-SNIDLE 70
             F+WK A+ L G F+  ++G+V+LP  +LRR++  L  T+ AV  K   F   +     
Sbjct: 11  VAFVWKVADTLRGTFRQHEYGQVMLPLLVLRRMDAVLVDTKPAVLAKAKTFETIAAPQAM 70

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              KVAG  FYN S ++ ++L S +     NL +YI   S +A  + E ++    IAR++
Sbjct: 71  MLKKVAGQRFYNISRFTFTSLLSDDKALAENLSNYIRGLSSDAYVVMEAYNLDDKIARMD 130

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +AG+LY++  +F+ ++L P  V +  M  I+E L+RRF    +E A +  TPR+V+ L  
Sbjct: 131 RAGILYRVLADFADLDLRPSVVSNEAMGYIFEDLLRRFSEMSNETAGEHYTPREVIRLMV 190

Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            LL+  +      E+P  +RT+YDP  GTGG L  AM H+       ++      +GQEL
Sbjct: 191 ELLVGGEAHRELVENPLPVRTVYDPAAGTGGMLMTAMEHMRALNPETEVK----VYGQEL 246

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             ET A+  + ++++ ++        K ++ G++L++D F  + F + L+NPP+G  W  
Sbjct: 247 NDETWAIAQSDLMMQDID-------PKQMRNGNSLTQDAFGAEHFDFILANPPYGVNWAG 299

Query: 308 DKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +++EH K G  GRFG GLP+ SDGS+LFL H+ +K++     G R  IVLS SPLF
Sbjct: 300 YAAPIKEEHAKQGMNGRFGAGLPRSSDGSLLFLQHMLSKMKPT---GSRVGIVLSGSPLF 356

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           +G A SGES IR+W+LEND +E IVALP  +F+ T I+TY+WIL+N K +  RG V+L++
Sbjct: 357 SGAADSGESRIRQWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKADADRGLVKLVD 416

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYV----SRENGKFSRMLDYRTFGYRRIKVL 481
           A  + T +R   G KR+ +  D   +I  +Y       ++    ++L    FG++RI V 
Sbjct: 417 ARAMGTKMRKSLGDKRKELTADAIAEIGRLYGGALDEVDDDARIKVLPREAFGFQRITVE 476

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RP+R  + +    +A    D+     +PL                   G      K  + 
Sbjct: 477 RPMRRRWEVTTEAVADAPFDV----FAPL------------------VGQRFQTEKALLA 514

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599
             +A T   K + +    F  A    DP A  VT   G+  PD +L + ENVP  +    
Sbjct: 515 EADAIT---KLTAAQRKKFATACAVADPDAPIVTK-KGQAEPDPDLRDAENVPLPDGWFS 570

Query: 600 --------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                         + +   E+ P+VPDA+ID            ++G EI F R FY Y+
Sbjct: 571 LDPDARETALRETAEAHLESEIRPYVPDAWIDHTK--------TKIGVEIPFTRQFYVYE 622

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMA 672
           P R +++I AE++ +E QI   ++++ 
Sbjct: 623 PPRPVEEIAAEIRDLETQIQGWMKDLG 649


>gi|257791268|ref|YP_003181874.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257475165|gb|ACV55485.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 691

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 282/698 (40%), Positives = 398/698 (57%), Gaps = 32/698 (4%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T  A    N IW  A  +    +  D+ K+ILPF +LRR ECALEPTR+AV  +  
Sbjct: 1   MADKT--AFDYVNEIWSIANYVRDVIRPADYNKLILPFAVLRRFECALEPTRAAVSRQ-A 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A G  + D   +  ++G+ FYN + ++LS LG+T T + L +YI  FS NA+ + + F+ 
Sbjct: 58  AKGVWDDDDPKYCALSGHCFYNVTSFTLSNLGATKTCDALMAYINGFSVNAREVLQRFEM 117

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             T  +L++ G+LY++C  FSG +L P+TV DR+M++IYEHLI+R+G E+S+ AEDFMTP
Sbjct: 118 RQTCEKLDEKGMLYEVCTRFSGFDLGPETVSDRMMTDIYEHLIQRYGEEISQDAEDFMTP 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPP 238
           +DV  LATALL   +D L     G IRTLYD +CGT GF+ DA++ + +     H K P 
Sbjct: 178 KDVARLATALLFANEDTLLNADNGDIRTLYDGSCGTCGFICDALDQLDEWHDKGHFKSPT 237

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKDLFTGKRF 292
            +VP+GQELE  T A+  A +++R +        D   DLS  I  G TL  D F G+ F
Sbjct: 238 KIVPYGQELEDATWAMGKAALMLRNIAGGSGDVLDQMTDLSAGIMLGDTLDDDRFEGRTF 297

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +Y L+NPP+GK+W+K+KDAV +E   G  GRFG G P I DGSMLF+ ++A K+  P  G
Sbjct: 298 NYQLTNPPYGKEWKKEKDAVLEEMGRGFDGRFGAGKPDIDDGSMLFMQNVAAKMAPPKEG 357

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG+AAIVLS SPLFNG AGSG S IRRWL   DL++ IV LPT++F+RT IATY+W+L+N
Sbjct: 358 GGKAAIVLSGSPLFNGDAGSGPSGIRRWLFSEDLVDCIVKLPTEIFYRTGIATYIWVLNN 417

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            K E R+G VQLI+A++  T++R  +G KR  I +DQ   I+  YV   +   S ++   
Sbjct: 418 HKPENRKGYVQLIDASEEKTALRKSQGNKRYEIGEDQAAWIVRTYVDGHDHGRSVIVPVE 477

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
            F YR++   RPLR+       GL  L        KLS   ++     ++        Y 
Sbjct: 478 NFMYRKVTTQRPLRVVIEPSVDGLDALFTLSKPMEKLSDASRAAIRSWVEKNEGASLTYS 537

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
              +  ++  K+ E    +     +   A +  FGR+DP A P  D  G  + D  L + 
Sbjct: 538 EVLAATEKLHKAIEKPKPQ---KAALADALVKVFGRRDPSATPAIDAKGNPVFDPELKDT 594

Query: 591 ENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG---------------YEI 635
           ENVP    I DY   EV P+ PDA +D+   DE   +  + G                 I
Sbjct: 595 ENVPIGMEINDYMATEVLPYAPDAVVDESVKDEPKYD-AKSGLTANPLGDGGVGVVGTTI 653

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +FNR+FY+Y+  R  Q I  E+  +E  +  L+     
Sbjct: 654 SFNRYFYKYEKPRDPQVIAKEILELEDGLGELMRGFLA 691


>gi|121583286|ref|YP_973722.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596544|gb|ABM39980.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 607

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 255/675 (37%), Positives = 360/675 (53%), Gaps = 77/675 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + + LANF+W  A+ L GD+K  D+GKVILP TLLRRL+C LE T+  V E++    G 
Sbjct: 3   QNFSELANFVWSVADLLRGDYKAADYGKVILPLTLLRRLDCVLEGTKEQVLEEHAKHKGE 62

Query: 66  NIDLESFVKV----AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
                S  ++    +  +FYNTS ++L TL     + R NL +YI  FS +A+ +FE F 
Sbjct: 63  GDAPTSLDRILKRKSKQAFYNTSPFTLQTLLDDQKHIRQNLTAYIGEFSADARDVFERFK 122

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   +  L+   LL+ + + F+ I+LHPD VP+  M  ++E LIR+F    +E A +  T
Sbjct: 123 FLERLVELDDKDLLFLLMQKFASIDLHPDAVPNETMGLVFEELIRKFAEASNETAGEHFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L    L   D     + PG++R++YDPT GTGG L+             K    
Sbjct: 183 PREVIQLIVHCLFSGDSEALSK-PGVVRSMYDPTAGTGGILSVGEAVARSINKSAK---- 237

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +V  GQEL  E++A+C A MLI+  +        KNI +G+TLS D F  ++F Y  +NP
Sbjct: 238 MVLFGQELNDESYAICKADMLIKGQD-------PKNIVRGNTLSADGFPDEKFDYGAANP 290

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K  D ++ EH+  G  GRFGPGLP++SDGS+LFLMHL +K+     GGGR  I
Sbjct: 291 PFGVDWKKVLDPIKTEHETKGFAGRFGPGLPRVSDGSLLFLMHLISKMRPAAEGGGRIGI 350

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL+ SPLF G AGSGESEIRRWLLEND++EAI+ALP D+FF T IATY++IL N K  +R
Sbjct: 351 VLNGSPLFTGDAGSGESEIRRWLLENDMLEAIIALPNDIFFNTGIATYIFILDNDKKADR 410

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +GKVQLI+AT ++T ++     +R+       +I D        + S ++   + G +  
Sbjct: 411 KGKVQLIDATRMYTKMKKSLGNKRV-------RITD-------EQISEIVGVYSAGAKDA 456

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                 +                      +P        + K    + + Y         
Sbjct: 457 NFELEFKEPVKSTGG--------------NPAEAPALRIVSKVFENKFFGYR-------- 494

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
                     KV   +         F              GE   D +L + E+VP  ES
Sbjct: 495 ----------KVTVDRPLAEGKTGKF------------KKGEKAFDKDLRDTESVPLTES 532

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  YF REV PHVPDA+++K   DEKD   G+VGYEINFNR+FY Y+  RK   I  E+ 
Sbjct: 533 IDAYFKREVLPHVPDAWVNKDVKDEKDGLPGKVGYEINFNRYFYVYKAPRKPAVIAEEIL 592

Query: 659 GVEAQIATLLEEMAT 673
            +E +   L++ +  
Sbjct: 593 EMEKRFVELMKGVVA 607


>gi|50086400|ref|YP_047910.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter sp. ADP1]
 gi|49532376|emb|CAG70088.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter sp. ADP1]
          Length = 751

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/758 (29%), Positives = 357/758 (47%), Gaps = 98/758 (12%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MT      +    +   +W  A  + G ++   + +V+LP  +L R +  L P    ++ 
Sbjct: 7   MTNEVNQHSQHGKIVGLVWSIANIIRGPYRPPQYRRVMLPLIVLGRFDAILAPYADEMKA 66

Query: 58  KYLAFGGSNIDL-----------ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYI 104
            Y     +  D            +   K    + YN S ++L  L         NL  YI
Sbjct: 67  SYEKAVATLQDKTPNVFLQKQLSQIADKDRKQNLYNISGFNLKKLLDDPDQFTANLTKYI 126

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNI 158
             FS  AK IF  F+F+  I +L+ A  LYK+ + F      SG+ L P +V +  M  +
Sbjct: 127 DGFSPKAKDIFAKFEFAKEIEKLDDANRLYKVFQEFRNGLGESGLSLAPSSVSNLQMGYL 186

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+R+F  + +E A D  TPR+V+ L   L+ + D     ++ G+ R++YDPT GTGG
Sbjct: 187 FEELVRKFNEQANEEAGDHFTPREVIELMVNLIFEEDQDELVKA-GVHRSIYDPTAGTGG 245

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-----LESDPRRDLS 273
            L+++   +            L  +GQE  PE++A+C + +LI+      +       + 
Sbjct: 246 MLSESEKFLKKYNDKI----SLDMYGQEYNPESYAICCSDLLIKDEPAENIVYGDTLGVK 301

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
              ++   + +D    K FHY  SNPPFG +W+  KD +++E K G  GRFG GLP+I+D
Sbjct: 302 NAKEKDGYVPRDGHADKDFHYMFSNPPFGVEWKNQKDFIDEEEKQGFSGRFGAGLPRIND 361

Query: 334 GSMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           GS+LF  H+ +K++  P  GG   R A+V + SPLF G AGSGES IRRW++END +EAI
Sbjct: 362 GSLLFAQHMISKMKASPENGGEGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDWLEAI 421

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQR 449
           +ALP  +F+ T I TY+WI+SN+K+E+R+GKVQLI+ T  +  + ++ G KR  ++    
Sbjct: 422 IALPDQMFYNTGIYTYIWIISNKKSEQRKGKVQLIDGTAHYQKMAKSLGNKRHELSKAHI 481

Query: 450 RQILDIYVSRENGKF--------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            ++   Y   E+                 S++ + + FGY ++ V RPLR++F +    +
Sbjct: 482 AELTKFYSKFEDQDTSALIQSKTGEAKICSKIFNNQDFGYLKLTVERPLRLNFTISAERI 541

Query: 496 ARLEADITWRKLSPLHQSF---------------WLDILKPMMQQIYPYGWAESFVKESI 540
           A L+    +  L+   +                    I   +  +I    W        +
Sbjct: 542 ALLDDQSAFTSLAKSKKVKDTAEISKEEQAGRLQQEAIKNALTAKISDQVWKNRDEFLKV 601

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI- 599
                K L  K       A + A   +D  AD   D  G   PDT L + E V + + + 
Sbjct: 602 LDPILKGLTFKLGAPVKKAILEALSERDQTADICKDSKGNIEPDTQLRDTELVAFPDHLT 661

Query: 600 ------------------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                                   + Y   EV PHV DA+ID            +VGYEI
Sbjct: 662 LPLPVNYDKEPDLSKLLPLVKAHCEAYLKAEVLPHVADAWIDY--------SKTKVGYEI 713

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             NR FY Y+P R L++I AE+  +E +I  +L  ++ 
Sbjct: 714 PINRHFYIYEPPRPLEEIKAEIVQLEQEIMQMLGGLSA 751


>gi|229198632|ref|ZP_04325334.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus m1293]
 gi|228584914|gb|EEK43030.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus m1293]
          Length = 679

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/699 (33%), Positives = 354/699 (50%), Gaps = 60/699 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
                 NFIWKNAE L G +K  ++ +V+LP  +LRR +C L+PT+  V E+        
Sbjct: 5   QNNEFVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQQVLERAKVVKHDA 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           I      K+ GY F NTS++   TL     N   NL +YI  FS + + IFE F F + I
Sbjct: 65  I----LNKITGYDFNNTSQFDFQTLLKDPDNIAANLRNYIQGFSVDIRTIFERFGFDTQI 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++++  LLY + + FSGI+L    V +  M  I+E  IRRF       A D  TPR+V+
Sbjct: 121 QKMDEHNLLYSVVQVFSGIDLSIQRVSNIQMGYIFEEFIRRFSENA--EAGDHYTPREVI 178

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+L+ D +   +   +++ + D  CGTGG L++A  ++ +   + ++       G
Sbjct: 179 QLMVNLVLNEDQSELMQEGKIVQ-IGDFACGTGGMLSEATRYIQELNPNAQVE----VFG 233

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+ P+++A+  A +LI+   +      +      S  + D     +  Y L NPPFG  
Sbjct: 234 QEINPKSYAIACADLLIKGQNAGHIAFGN------SLTNTDGHKDLQVRYALMNPPFGVD 287

Query: 305 WEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+   + +++EH+  G+ GR+G GLP+ SDGS+LFL H+ +K++     G R AI+ + S
Sbjct: 288 WKHYGEGIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRD-EKGSRMAIIFNGS 346

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------ 417
           PLF G AGSGESEIRRW++E DL+E IVALP  LF+ T I+TY+WILSNRK ++      
Sbjct: 347 PLFTGDAGSGESEIRRWIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKNDDLVKGAV 406

Query: 418 RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+GK+QL++AT     +R   G KR  I + Q   I  +Y   +  ++ ++ D   FGY 
Sbjct: 407 RKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAGITRMYGEFKENEYCKIFDLEDFGYH 466

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP--------------- 521
           +I V RPL+++F++    +  L  + T+ KL        L   K                
Sbjct: 467 KITVERPLQLNFMISPKRIENLYNEATFAKLYDKEAYTELSRKKDKKPADMKKLEKWDEG 526

Query: 522 -MMQQIYPYGWAESFVKESIKSNEAKTLKVK--------ASKSFIVAFINAFGRKDPRAD 572
            M+Q+       E+      K+ E     +K               A       +D  AD
Sbjct: 527 KMLQEKILAILQENISDTLYKNREDFLKGLKPLFKNVPEVKAGLWKAIYMGLSERDEIAD 586

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
              D   +   D  L + EN+   E IQ+YF REV  HVPDA+ID+           ++G
Sbjct: 587 VCKDTKRKVEADPTLRDTENISLKEDIQEYFGREVLTHVPDAWIDE--------SKTKIG 638

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           YEI F R+FY+Y+       +      +E  I  LL+++
Sbjct: 639 YEIPFTRYFYKYEQLESSSVLKQRAIQLEENIQELLKKV 677


>gi|256826062|ref|YP_003150022.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
 gi|256689455|gb|ACV07257.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
          Length = 644

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/687 (32%), Positives = 351/687 (51%), Gaps = 79/687 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
             F+W+ A+ L G FK  ++G V+LP  +LRR++ AL  T++ V  +   +       + 
Sbjct: 10  VAFVWRIADRLRGTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGPGQDK 69

Query: 72  FVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +K  +   FYNTS  + + L   + N R NL  YI   S  A  + E +DF   I R++
Sbjct: 70  LLKRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPKIERMD 129

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  +LY +  +F+ ++L    V +  M  I+E L+R+F    +E A +  TPR+V+ L  
Sbjct: 130 RDDILYGVIADFADLDLRTSVVSNEAMGYIFEELLRKFSEMSNETAGEHYTPREVISLMV 189

Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            LLL         E+P  +RT+YDP  GTGG L  A++ V     +      +   GQEL
Sbjct: 190 QLLLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGALDGVQGLNGN----ATVTVSGQEL 245

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             ET A+  + +++  +  +        + +G++L++D F  ++F + L+NPP+G  W+K
Sbjct: 246 NDETWAIAQSDLMMLGIGPE-------RMARGNSLTQDAFPTEQFDFMLANPPYGVDWKK 298

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               ++ E +N G  GRFG G P++SDGS LFL H+ +K++    GG R  IVLS SPLF
Sbjct: 299 YAGPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMK---PGGSRIGIVLSGSPLF 355

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           +G+AGSGESEIR W+LEND +E IVALP  +F+ T I+TY+WIL+N K    RGKV+LI+
Sbjct: 356 SGQAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKDGASRGKVRLID 415

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYV----SRENGKFSRMLDYRTFGYRRIKVL 481
           A ++ T +R   G KR+ +  +  R+I ++Y        +    R+++   FGY+RI V 
Sbjct: 416 AREMGTKMRKSLGDKRKELKPEAIREITNLYGGALDEFADDPRVRVMNRNDFGYQRITVE 475

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RP+R  + +                L+  H+     + +              F  E   
Sbjct: 476 RPMRRHWEVTSE-------------LAEAHEGIGHLVGR-------------RFETEKAL 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599
           SNE   L  K  K+ +          D  A PV    GE  PD +L + EN+P  +    
Sbjct: 510 SNELADLDTKERKAVLK----GAAIADEEA-PVILKKGEPAPDPDLRDAENIPLPDGWMD 564

Query: 600 --------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                         + +   E+ P+VPDA++D            +VGYEI F R FY Y+
Sbjct: 565 LPENRRFSTLDEAAEKHLHTEIHPYVPDAWLDY--------SKTKVGYEIPFTRQFYVYE 616

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMA 672
           P R + +I AE+K +E QI   ++ + 
Sbjct: 617 PPRPVDEIAAEIKELEEQIQGWMKGLG 643


>gi|330971617|gb|EGH71683.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 521

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/538 (43%), Positives = 325/538 (60%), Gaps = 19/538 (3%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + F+   L P+ + +  M  I+E LIR+F    +E A +  TPRD+VHL T+L++   D 
Sbjct: 1   QRFAVAPLEPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRDIVHLTTSLVITDQD- 59

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K +P  I T+YDPT GTGGFL++   ++            +  HGQEL PE++A+C A
Sbjct: 60  -HKLAPNSIVTIYDPTAGTGGFLSEGDEYIQSISE----KVSVSLHGQELNPESYAICKA 114

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            MLI+  +         +I+ G+TLS D    KRF + LSNPPFG +W+K +  +  EH 
Sbjct: 115 DMLIKGQD-------VASIKLGNTLSNDQLADKRFDFMLSNPPFGVEWKKVQKQITDEHS 167

Query: 318 -NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L+ SPLF G AGSGESE
Sbjct: 168 HKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIILNGSPLFTGGAGSGESE 227

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IRR+LL+NDL+EAI+ALPTD+F+ T IATY+WILSN K   R+GKVQLI+ +  +  +R 
Sbjct: 228 IRRYLLQNDLVEAIIALPTDMFYNTGIATYVWILSNHKAAARQGKVQLIDGSQHYAKMRK 287

Query: 437 E-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             G KR+ I +DQ  +++ +Y S E    S++     FGYRRI V RPLR++F      +
Sbjct: 288 SLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIDAFGYRRITVERPLRLNFQTSTERI 347

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
           A++  +   +KL    +   L  L+ M      +   E F K   K+  A +  V  S  
Sbjct: 348 AKVLEEKALQKLDSAARQQLLAALQAM-DATKLHRNREQFSKLLKKALTAHS--VSLSMP 404

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
            + A +NA  ++DP AD  T   G+   DT L + ENVP  ES+ DYF REV PHVPDA+
Sbjct: 405 ELKALLNALSKRDPEADICT-SKGQLEADTGLRDNENVPLGESVHDYFHREVIPHVPDAW 463

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ID+   D  D E+G VG+EI FNR FY +QP R L +ID +LK    +I  ++E ++ 
Sbjct: 464 IDESKTDALDGEVGIVGFEIPFNRHFYMFQPPRPLAEIDRDLKACTDRIKQMIEGLSA 521


>gi|238761819|ref|ZP_04622793.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638]
 gi|238699933|gb|EEP92676.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638]
          Length = 756

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 278/765 (36%), Positives = 383/765 (50%), Gaps = 140/765 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLS 89
           ILPFTLLRRLEC L PT+ AV  +      S +  E   K       G SF+NTS   L 
Sbjct: 2   ILPFTLLRRLECVLAPTKDAVVAEAEKLKTSPLPEEGREKFLLRATKGLSFFNTSPMDLG 61

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            +G  + R NL++Y+  FS +A+ IFE F F+  +  L+ A LL+KI K F+  +L P+ 
Sbjct: 62  KIGQNDIRANLDNYVQCFSKDAREIFEHFKFTEFVGLLDDANLLFKIVKKFATTDLSPNA 121

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           + +  M  ++E LIRRF    +E A +  TPRD+V L T+L+   D+    +  G+IRT+
Sbjct: 122 ISNYEMGLVFEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDNDALSKD-GIIRTI 180

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT GTGGFL+  M +V +   +     ++   GQEL PE++A+C A MLI+  +    
Sbjct: 181 YDPTAGTGGFLSSGMEYVHELNPN----AVMRAFGQELNPESYAICKADMLIKGQDVS-- 234

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGL 328
                 I+ G+TLS D     +F Y LSNPPFG  W+K +  +  EH+  G  GRFGPGL
Sbjct: 235 -----RIKLGNTLSNDQLPQDQFDYMLSNPPFGVDWKKIEGEINDEHQLKGFNGRFGPGL 289

Query: 329 PKISDGSMLFLMHLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           P++SDGS+LFLMHL +K+    N       GGR  I+L+ SPLF G AGSGESEIRR++L
Sbjct: 290 PRVSDGSLLFLMHLISKMRDNHNLDGSVSNGGRIGIILNGSPLFTGGAGSGESEIRRYIL 349

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKR 441
           E DL+E IVALPTD+F+ T IATY+WILSN+KT ER+ KVQLI+ T+L   +R   G KR
Sbjct: 350 EADLLEGIVALPTDMFYNTGIATYVWILSNKKTPERKDKVQLIDGTNLCGKMRKSLGSKR 409

Query: 442 RIINDDQRRQILDIYVSRENGK----------------------------------FSRM 467
            I+ +D  + I   +   E  +                                   S++
Sbjct: 410 NIMGEDDIKLITRTFGDFEVVETTTLEALGLEKAPEQKSNRGRQSATAKIEAPKTFASKI 469

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDK----------------------------------- 492
            +   FGYRR+ + RPLR+S  +                                     
Sbjct: 470 FNSTDFGYRRLTIERPLRLSAQVTDEAIATLRFAPKPFSAPMERLYGEFAGQWQDDNYGD 529

Query: 493 -TGLARLEADITWRKLSPLHQSFWLDILKPMM--------------------QQIYPYGW 531
            TGL      I   + + L +    D+L   +                    +       
Sbjct: 530 FTGLEVEARAIIKAEFAELKEKQIKDLLDRKLWLAQRALMDKAQQIQTALGAKAGGKTQV 589

Query: 532 AESFVKESI-KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN------------ 578
           ++ F +  +      KT  VK        FI+A   K+P A+PV                
Sbjct: 590 SDDFNEFQLTLKGAIKTAGVKLDTKENKQFIDAITTKNPDAEPVVKKILKEAVQPLYGAF 649

Query: 579 ------GEWIPDTNLTEYENVPYLESI------QDYFVREVSPHVPDAYIDKIFIDEKDK 626
                  E+  D  L + ENVP   +I      ++YF  EV PHV DA+I+    D KD 
Sbjct: 650 EYQGKVVEFEQDGELRDNENVPLNPAIATSDLIENYFKAEVLPHVADAWINADKRDAKDG 709

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EIG VGYEI FNR FY YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 710 EIGIVGYEIPFNRHFYVYQPPRPLEEIDADLDAVSAEIMKLLQEV 754


>gi|289166195|ref|YP_003456333.1| type I restriction-modification system (N6 DNA methylase)
           [Legionella longbeachae NSW150]
 gi|288859368|emb|CBJ13304.1| putative type I restriction-modification system (N6 DNA methylase)
           [Legionella longbeachae NSW150]
          Length = 711

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/725 (32%), Positives = 361/725 (49%), Gaps = 80/725 (11%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGG 64
             ++ NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ +V   +K L   G
Sbjct: 6   HNTITNFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDALLEPTKESVLSMKKQLDNAG 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDF 120
                 +  + +  +FYN S ++L  L +       + + ESY+  FS N + I E F F
Sbjct: 66  IANQDAALCQASDEAFYNCSPFTLRDLKNRTKMQQLKADFESYLDGFSPNVQEILEKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRF 166
            + I+ L +A +L  + + F    I L P  +             +  M  ++E LIRRF
Sbjct: 126 RNQISTLVEADILGALIEKFLNPNINLSPKPIYDTEGNERLPGLDNHAMGTVFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   ++  P     +    +   +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADVIFLPIAHEIESGTYL---VYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +  +       +  +GQE++PET+A+  A +L++   ++       NI+ GSTLS D 
Sbjct: 243 LQELATEAGKEVSIHLYGQEIQPETYAIAKADLLLKGEGAEAE-----NIKYGSTLSADA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPGLPKISDGSML 337
           F   +F + LSNPP+GK W+ D + +     + +  RF            + + SDG ++
Sbjct: 298 FVSNQFDFMLSNPPYGKSWKTDLERMGG-KGDIKDPRFVISYADEPEYEMITRSSDGQLM 356

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++   K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++
Sbjct: 357 FLVNKLMKMKESSKLGSRIAHVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENI 416

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+NRK++ER+GKVQLI+AT  + S+R N GKK   ++D+   QI ++ 
Sbjct: 417 FYNTGIATYIWVLTNRKSQERKGKVQLIDATKWYQSLRKNLGKKNCELSDEHIAQICNLV 476

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           V     + S+M     FGY +I V RPLR+S  L +  L++ +      K + L     +
Sbjct: 477 VHPIETEQSKMFPNEAFGYYKITVERPLRLSVQLSEKQLSKFKQQCIAAKETGLFSIVEV 536

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT- 575
                      P+     F+ +   +N AK++ VK S   +    +     D  A+PV  
Sbjct: 537 LANHLGEG---PHKNYNQFINQL--NNHAKSMSVKLSAKNVKFLRDNLATVDDEAEPVIK 591

Query: 576 ------------------------DVNGEWIPDTNLTEYENVPY--LESIQDYFVREVSP 609
                                   DV  E+  DTNL + E VP      I  +F REV P
Sbjct: 592 KIHKLGSVNANPINGLFEMNINGKDVIVEYEADTNLRDSEQVPILEENGIPAFFQREVLP 651

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           + PDA+I        D     +GYEI+F + FY+  P R L++I A++  +E +   LL 
Sbjct: 652 YAPDAWI--------DISKNTIGYEISFTKHFYRPTPMRTLEEIKADIYAIERETEGLLG 703

Query: 670 EMATE 674
           E+  E
Sbjct: 704 EIIGE 708


>gi|289523864|ref|ZP_06440718.1| type I restriction-modification system, M subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502520|gb|EFD23684.1| type I restriction-modification system, M subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 701

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/719 (31%), Positives = 347/719 (48%), Gaps = 94/719 (13%)

Query: 2   TEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           T        + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV +   
Sbjct: 26  TMEVSQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKRAVLDLKA 85

Query: 61  AFGGSN--IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAI 114
           +   +       +  + AG +FYNTS ++L  L +  +R     +  +Y+  FS N + I
Sbjct: 86  SLDKAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEI 145

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYE 160
            ++F+F + I RL KA  L  + + F    I L P  V             +  M  I+E
Sbjct: 146 IDNFEFRNQIPRLTKADALGTLIEKFLDPSINLSPYPVLDSAGSVRLPGLDNHAMGTIFE 205

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+RRF  E +E A +  TPRD V L   L+ +P     +    +   LYD  CGTGG L
Sbjct: 206 ELVRRFNEENNEEAGEHWTPRDAVRLMARLIFEPIADQIESGTYL---LYDGACGTGGML 262

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T A   +            +   GQE+  ET+A+C + +L++  E +   ++    +  S
Sbjct: 263 TVAEETLLQLAKERGKQVSMHLFGQEINAETYAICKSDLLLKG-EGEAADNIVGGPEH-S 320

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISD 333
           TLS D F G+ F + LSNPP+GK W+ D + +       +        G     + + SD
Sbjct: 321 TLSNDAFPGREFDFMLSNPPYGKSWKSDLERMGGKSGIKDPRFVVQHRGEELSLITRSSD 380

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAIVAL
Sbjct: 381 GQMLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIVAL 440

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T IATY+W+L+NRK E R+G+VQLI+AT  +  +R N GKK   ++++  R++
Sbjct: 441 PLNMFYNTGIATYVWVLTNRKPEHRKGRVQLIDATQWYKPLRKNLGKKNCELSEEDIRRV 500

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           LD ++  E  + S++     FGY ++ V RPLR+  I D       +     R+ +   +
Sbjct: 501 LDTFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKGI-DPERTYTPKEIKALRETAERAE 559

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
                I K       P      F              V A K  +V              
Sbjct: 560 DAPPVIKKIHKPGTAPDPLRGLFEM------------VIAGKPRVV-------------- 593

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLE------------------SIQDYFVREVSPHVPDA 614
                  E+ PD  L + E +P+LE                  +I+ +  REV P+VPDA
Sbjct: 594 -------EYEPDKELRDSEQIPFLECQACHQPGYLPSPEDQRTAIEAFLRREVLPYVPDA 646

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           + D   +        +VGYEINFNR+FY+ +  R L++I A+L  VE +   LL E+  
Sbjct: 647 WYDPASV--------KVGYEINFNRYFYKPKALRPLEEIRADLLTVEREAEGLLAEILG 697


>gi|309390281|gb|ADO78161.1| N-6 DNA methylase [Halanaerobium praevalens DSM 2228]
          Length = 698

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/727 (33%), Positives = 376/727 (51%), Gaps = 89/727 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     NFIW  A  L G +K   +G +ILP ++LRR +C LEPT+  V EK       
Sbjct: 2   NNFGEKVNFIWNIANLLRGPYKPEKYGDIILPLSVLRRFDCILEPTKDKVLEKAKQVEIP 61

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               E     AG  F+N S+Y    L     N   NL +YI  FS N + I E+FDF   
Sbjct: 62  ----ELLNAAAGLKFHNKSKYDFEKLLDDPDNIAENLRAYIRGFSANIREIMENFDFDKE 117

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I +L    LL+ + K F+ ++LHP+ V ++ M  I+E LIRRF       A D  TPR+V
Sbjct: 118 ITKLNSNNLLFLVVKEFNKLDLHPEKVSNQEMGYIFEELIRRFSENA--EAGDHYTPREV 175

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   ++   ++ +   +P  I T+ D  CGTGG L+ A N++       ++      +
Sbjct: 176 IELMVNIIFSGEEDVVT-NPANISTIGDFACGTGGMLSVAENYIHKMNKEAEV----ALY 230

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE+  +++A+C A MLI+        + + NI  G++L+ DL  G R  Y L NPPFG 
Sbjct: 231 GQEINDQSYAICKADMLIKD-----EGENADNIALGNSLTNDLHKGLRVRYGLMNPPFGV 285

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W KD   V+KEHKN G  GRFG G P+ SDGS+LFL H+ +K++     G R AI+ + 
Sbjct: 286 SWSKDSKEVKKEHKNQGFDGRFGAGTPRTSDGSLLFLQHMLSKMKTDK-KGSRMAIIFNG 344

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----- 417
           SPLF G A SGESEIRRW++ENDL+E I+ALP +LF+ T IATY+W+LSNRK ++     
Sbjct: 345 SPLFTGDANSGESEIRRWIIENDLLEGIIALPEELFYNTGIATYIWVLSNRKNDDLAKGP 404

Query: 418 -RRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+ K+QL++AT     +R   GKKR  I   Q  +I +IY + ++ ++S++ D   FGY
Sbjct: 405 IRKDKIQLVDATSFSEPMRKSLGKKRNKITKPQINRITEIYGAFQDNEYSQIFDKEEFGY 464

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKL---------------------------- 507
            ++++ RPL+++F + +  +  + A+ T+ KL                            
Sbjct: 465 LKVRIERPLKLNFKITEDRIENIYAENTFSKLFDEEKYKKLKKLSEAPEFKSKDKNKLEK 524

Query: 508 ---SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
                  Q   L+ L+  ++Q   +   + F +   +        +   +S + A  N  
Sbjct: 525 LEAGKKLQDKILNRLRANIEQDKVWKNRKEFKEVLKEILG----DLDLKRSLMKAVRNGL 580

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPY------------------LESIQDYFVRE 606
            ++D  AD      G+   DT+L +YE + +                   ++IQ YF  E
Sbjct: 581 AKRDETADYC-KKRGKIESDTDLRDYERILFSHKVEGYKQDYSDFVEKEKDNIQTYFEEE 639

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V PHVP+A++D  +         RVGYEI F R+FY+++       I  +++ +EA+I  
Sbjct: 640 VKPHVPEAWVDYSY--------TRVGYEIPFTRYFYEFEELEPSHKIKEDIEKLEAEINE 691

Query: 667 LLEEMAT 673
           +++++  
Sbjct: 692 IMQKVLG 698


>gi|150017996|ref|YP_001310250.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052]
 gi|149904461|gb|ABR35294.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052]
          Length = 673

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/690 (33%), Positives = 381/690 (55%), Gaps = 48/690 (6%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGSNID 68
           +  +F+W  AE L G +K  D+ KV++P  ++RR +C L+     + +K Y  +     +
Sbjct: 6   NFVSFLWNIAESLRGTYKEEDYRKVMIPMIVVRRFDCLLDDYDKEIIKKVYSNYDYMPEE 65

Query: 69  LESFVKVAGYS--------FYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
               + +A           FYN S+++   L   S N + N E Y+  FS+N K I   F
Sbjct: 66  EIDEIVIADLKENHNIDLQFYNVSDFTWKKLLDDSENIKANFEEYLNGFSNNVKEIIGKF 125

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +F + I +L+K   LY + +  S ++LH + + +  M  IYE ++RRF    +  A +  
Sbjct: 126 NFKAEITQLDKKNKLYAVLQKMSEVDLHINKISNNKMGYIYEEMLRRFTE--NSAAGEQY 183

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L    ++   E   +I ++ D  CGTGG L+ A  +V +         
Sbjct: 184 TPREVIKLCMEMLFLGKESFITEEGKVI-SIADFCCGTGGMLSIAEAYVENLNE----KA 238

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I+  +GQEL  E+ A+C A ML++    D       NI+ G+TL++D F+G+   + +SN
Sbjct: 239 IVDVYGQELLDESFAICQADMLMKGQNPD-------NIRLGNTLTEDRFSGEHMRFLISN 291

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG  W+ ++  V+ E   G  GRFG G P++SDGS+LFL ++ +K+      G R AI
Sbjct: 292 PPFGVTWKDEEKKVKDEADLGFDGRFGAGTPRVSDGSLLFLQNMISKM-YDDEEGSRIAI 350

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF G AGSGES IRRW++END++E I+ALPTD+F+ T IATY+W+++NRKTE R
Sbjct: 351 IFNGSPLFTGDAGSGESNIRRWIIENDMLEGIIALPTDMFYNTGIATYIWVITNRKTENR 410

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GK+QL+NATD +  +R   G KR+ I+ +Q ++I  IY S E  +  R+ D + FGYR+
Sbjct: 411 KGKIQLVNATDFYVPMRKSLGNKRKEISTEQIQEIKSIYESFEPSENCRIFDNKEFGYRK 470

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLS----------PLHQSFWLDILKPMMQQIY 527
           I + RPL++SF +D+  +++++    +  L+             ++   ++   +++ + 
Sbjct: 471 ITIERPLKLSFKVDEEAISKVKETTQFINLAVSKKKDEAAKASEEALGKEVQNKIIEMLQ 530

Query: 528 PYGWAESFVKE----SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            +   E ++          ++AK   +    + + A  ++ G ++  AD   D  G    
Sbjct: 531 SFDSNEVYLNREEFIKKVKSKAKNYDLTLGAALLKAIWSSIGERNEDADICKDSKGNPES 590

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           D++L + E++   E I  YF REV PHVPDAY+D+            +GYEI F R FY+
Sbjct: 591 DSSLKDTESIQLKEDINAYFEREVKPHVPDAYMDETTFSN-------IGYEIPFTRHFYK 643

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y+  R   DI  E++ +E +IA  ++++  
Sbjct: 644 YEKLRAFSDIMKEVEDLEQEIAVEIKKVLG 673


>gi|167771154|ref|ZP_02443207.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM
           17241]
 gi|167666824|gb|EDS10954.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM
           17241]
          Length = 671

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/707 (30%), Positives = 345/707 (48%), Gaps = 74/707 (10%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M         + NFIW  A+D L   +    +  VILP T++RRL+  L+ T+  V +  
Sbjct: 1   MIMDNQIHNQIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLQDTKQQVMDMK 60

Query: 60  LAFGGSN--IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKA 113
                +      ++    AG +F NTS + L  L         + +  +Y+  FS N + 
Sbjct: 61  AKLDAAGITNQTDALCVAAGQAFCNTSPFRLRDLTARAKQQQLKADFIAYLDGFSPNVQE 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSN 157
           I + F F + I  + +A +L  + + F    I L P+ V               +  M  
Sbjct: 121 ILQKFQFRNQIDTMIEADILGAVIEKFVSKEINLSPNPVYTDDSKTEIKLPGLDNHAMGT 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E LIR+F    +E A +  TPRDVV L   L+  P     K++     + YD  CGTG
Sbjct: 181 IFEELIRKFNEANNEEAGEHYTPRDVVELMADLIFVPIKDQIKDATY---SCYDGACGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G LT A + + +          +   GQE++PET+A+C A ML++          +++I 
Sbjct: 238 GMLTVAQDRLLELAEETGKQVSIHLFGQEVQPETYAICKADMLLKG-----DGKQAEHIS 292

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--------EKEHKNGELGRFGPGLP 329
            GSTLS D    ++F + LSNPP+GK W+ D + +         + +   E G     +P
Sbjct: 293 YGSTLSMDGNAARQFDFMLSNPPYGKTWKVDAEKMGGKKDILDSRFNAYLEDGTQLAMIP 352

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           ++SDG +LFL++ A K++     G R A V + S LF G AGSGES  RR+L+E+DL+EA
Sbjct: 353 RVSDGQLLFLLNNAAKMKTDTPLGSRIAEVHNGSSLFTGDAGSGESNARRYLIESDLVEA 412

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           ++ALP  +F+ T I TY+W+LSN+K E R+GK+QLI+AT + +++R N G+K   +  + 
Sbjct: 413 VIALPEKMFYNTGIGTYIWVLSNKKEERRKGKIQLIDATTMKSTLRKNMGEKNCELTPEL 472

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           R +I+ I++  E    SR+ D R F Y  I V RPLR+    D+T  A      T++K  
Sbjct: 473 RDEIMRIFMEMEESSVSRVFDNREFAYWSITVERPLRLRVYPDRTIPAD-----TFKKAE 527

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            L Q        P       +                     K   + +         KD
Sbjct: 528 ELEQVQKAIRSVPAGTPTDDWTVFAEAT--------------KLKAAALKKIRPFITEKD 573

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
           P A P+     +  PDT+L + E +P  Y   I  +   EV P+ PDA++D+        
Sbjct: 574 PMAQPI-----DGEPDTDLRDTEIIPFTYEGGIDAFMKNEVLPYAPDAWVDE-------- 620

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  ++GYE++F ++FYQ    R +++I A+LK +E++   +L E+  
Sbjct: 621 KKTQIGYELSFTKYFYQPVQLRSMEEIVADLKKLESETDGILAEILG 667


>gi|307826308|ref|ZP_07656515.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
 gi|307732664|gb|EFO03534.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
          Length = 789

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/800 (29%), Positives = 370/800 (46%), Gaps = 152/800 (19%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---- 60
            +   L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++ V E+      
Sbjct: 4   AAHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKAKVLEELAFQRN 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAI 114
             G + +D       +GY FYNTS+++L+ L  T T N      N+E Y+  +S N K I
Sbjct: 64  DMGLTELDDNGLKDASGYVFYNTSKWTLNQLFKTATNNQQILLANVEEYLNGYSANVKEI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRV-----------MSNIYEH 161
            + F+  + +  +    +L  + + F+   I L P  V D             M  ++E 
Sbjct: 124 IDKFNLKAQVRHMAGKDVLLDVLEKFTSPNINLTPHEVEDPDGNRLPALTNLGMGYVFEE 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIR+F  + +E A +  TPR+V+ L T L+ DP     K+    + T+YDP CG+GG LT
Sbjct: 184 LIRKFNEDNNEEAGEHFTPREVIELMTHLIFDP----VKDKIPPVMTIYDPACGSGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++ N + D     +    +  +G+E+  ET+A+C + M+I+        +   NI+ GST
Sbjct: 240 ESQNFIKDEEGAIRATGDVYLYGKEINDETYAICKSDMMIKG-------NNPSNIRVGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           LS D F G RF + LSNPP+GK W  ++  + K+  +    RF                 
Sbjct: 293 LSTDEFAGTRFDFMLSNPPYGKSWASEQKYI-KDGADVIDPRFRVTLKDYWGNPETVDAT 351

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++   N   G R A V + S LF G AG GES IRR ++ENDL
Sbjct: 352 PRSSDGQLLFLMEMVSKMKSLDNSPYGSRIASVHNGSSLFTGDAGGGESNIRRHIIENDL 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAI+ LP +LF+ T I TY+W+LSN K + R+GKVQLI+A+ L+  +R N G K     
Sbjct: 412 LEAIIQLPNNLFYNTGITTYIWLLSNNKAQPRKGKVQLIDASQLYRKLRKNLGNKNCEFA 471

Query: 446 DDQRRQILDIY-----VSRENGK---FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
            +  R+I+  Y       R+       +++ D   FGY ++ + RP R         +  
Sbjct: 472 YEHIREIVTAYLQLATKERQADDAGIAAQVFDNSDFGYYKVNIERPDRRKAQFSNERIET 531

Query: 498 LEADITWRK---------------------------------------------LSPLHQ 512
           L  D + R+                                             LSP   
Sbjct: 532 LRFDKSLREPMQWIYSQWGEAVYQPGTLDEREKAILVWCDENELNLNTKNRQKLLSPNTW 591

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIK---SNEAKTLKVKASKSFIVAFINAFGRKDP 569
              LD+++     +   G AES      K       K   +K S     A +NA    D 
Sbjct: 592 KKQLDLVQAAKALMAAIGEAESSDFNQFKGQVDEALKAQGIKLSAGDKKAILNAVSWYDE 651

Query: 570 RADPV---------------------------------TDVNGE---WIPDTNLTEYENV 593
            A+ V                                 TD  GE   +  +T+L + E++
Sbjct: 652 TAEKVIAQKLKLGGDKLDQLLHHLDCTEQDLPDYGYYSTDKKGEYLSYETNTDLRDSESI 711

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P    I+ YF+ EV PHV +A+I+         +  ++GYEI+FN++FY+++P R ++++
Sbjct: 712 PLKGDIRSYFLAEVKPHVAEAWINL--------DSTKIGYEISFNKYFYRHKPLRSMKEV 763

Query: 654 DAELKGVEAQIATLLEEMAT 673
            +++  +E +   L+ ++  
Sbjct: 764 ASDIIALERRAEGLIADILG 783


>gi|237809017|ref|YP_002893457.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
 gi|237501278|gb|ACQ93871.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
          Length = 797

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/803 (28%), Positives = 361/803 (44%), Gaps = 156/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQQEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
               +D E     +GY FYN S+++L TL +  T N      N   Y+  FSDN K I  
Sbjct: 66  NAVELDDEPLKAASGYVFYNISKWTLKTLHAAATNNQQILLQNFNEYLNGFSDNVKEIVG 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDR-----------VMSNIYEHLI 163
            F+  S I  + +  +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 RFNLKSQIRHMAEKQVLLDVVEKFISPNINLTPQECEDASGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQLPLTMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +          +  +G+E+  ET+A+C + M+I+        +   NI+ GSTLS
Sbjct: 242 QNFIEEKYPAVGASRDIHLYGKEINDETYAICKSDMMIKG-------NDPANIKIGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK--------------EHKNGELGRFGPGLP 329
            D F+  RF + LSNPP+GK W  ++  +++              ++      +     P
Sbjct: 295 TDEFSHMRFDFMLSNPPYGKSWASEQKNIKEGTEVIDPRFKVQLTDYWGKVDAKGSDATP 354

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + +K++ P NG  G R A V + S LF G AG GES IRR+L+END++
Sbjct: 355 RSSDGQLLFLMEMVSKMKAPVNGTIGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDML 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      
Sbjct: 415 EAIVQLPNNLFYNTGITTYIWLLNNNKPERRKGKVQLIDASQLFRKLRKNLGNKNCEFAP 474

Query: 447 DQRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +   +I+  Y+     +             S++ +   FGY ++ V RP R         
Sbjct: 475 EHIAEIMQTYLEFNEVERQLDANGDAIGLASKIFNNEDFGYFKVTVERPDRRKAQFSAER 534

Query: 495 LARLEADITWRKLSP------------------------------------------LHQ 512
           +A L  D +  +                                             L  
Sbjct: 535 IAPLRFDKSLSEAMEYCYGEYNDKVYQAGFLAEQGKHITDWCEKNDISLNNKAKEKLLDT 594

Query: 513 SFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
           +FWL   K       +M+ +    + +  + +       K   +K S     A +NA   
Sbjct: 595 AFWLSSRKLLDAAQTLMEGVGEAEFTDFNLFKDKVDAALKASSLKLSAPEKNAILNAVSW 654

Query: 567 KDPRADPVTD---------------------------------VNGE---WIPDTNLTEY 590
            D  A+ V                                     GE   +   ++L + 
Sbjct: 655 YDETAEKVVKKVLKLSADKLAELLELYSCEEGDLPDFGYYPHGKKGEFVTYESSSDLRDT 714

Query: 591 ENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
           E+VP  +SI  YF+ EV PHV +A+++         E  ++G EI+FN++FY+++P RKL
Sbjct: 715 ESVPLKQSIYQYFLDEVKPHVAEAWLNM--------ESVKIGCEISFNKYFYRHKPLRKL 766

Query: 651 QDIDAELKGVEAQIATLLEEMAT 673
           + +  E+  +E Q   L+ ++  
Sbjct: 767 EAVAQEIIDLEKQADGLIAQILG 789


>gi|167814675|ref|ZP_02446355.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei 91]
          Length = 545

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/605 (38%), Positives = 326/605 (53%), Gaps = 65/605 (10%)

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
              V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF + + RL K
Sbjct: 1   MRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYTQVERLAK 60

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+V+ L   
Sbjct: 61  ADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIRLMVN 120

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL   DD +      ++R +YDPT GTGG L+ A   + +     +    L  +GQEL  
Sbjct: 121 LLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVAR----LRMYGQELND 176

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           E++A+C A MLI+  + +       NI  G+TLS D   G++F Y LSNPPFG +W+K +
Sbjct: 177 ESYAICKADMLIKGQDVE-------NIVAGNTLSDDGHAGRQFDYMLSNPPFGVEWKKVE 229

Query: 310 DAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             V  E++  G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+ SPLF G
Sbjct: 230 KTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLNGSPLFTG 289

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G VQLI+A+
Sbjct: 290 GAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGFVQLIDAS 349

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
             W  +R   G KRR ++D+    +  ++ +    + + + D       R  V     + 
Sbjct: 350 SFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVVPAGSNVP 409

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
            +     +  +     +R                       +G+    V+ +++  + K 
Sbjct: 410 NVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERALRDEQGKV 449

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
           +                G K  +        G+   D++L + ENVP  + I  YF REV
Sbjct: 450 V---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIGVYFEREV 487

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            PH PDA+ID+        +  +VGYEI FNR FY ++P R L  ID ELK V A I  +
Sbjct: 488 LPHAPDAWIDE--------QKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAVSANIMRM 539

Query: 668 LEEMA 672
           LEE+A
Sbjct: 540 LEELA 544


>gi|284041086|ref|YP_003391016.1| N-6 DNA methylase [Spirosoma linguale DSM 74]
 gi|283820379|gb|ADB42217.1| N-6 DNA methylase [Spirosoma linguale DSM 74]
          Length = 787

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 235/804 (29%), Positives = 365/804 (45%), Gaps = 158/804 (19%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----L 60
            S   L +FIW  A+D L   +    +  VILP  +LRRL+  LEP +  V E+      
Sbjct: 4   QSHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPGKDEVMEEVRFQRE 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAI 114
             G + +D+      +GY FYNTS ++L  L  T T N      N   Y+  FSDN K I
Sbjct: 64  EAGFTELDVNGLQAASGYVFYNTSVWTLQKLHDTATNNQQLLEANFTDYLDGFSDNVKEI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDT-----------VPDRVMSNIYEH 161
              F+  S +  +    +L  + + F+   I L P             + +  M  ++E 
Sbjct: 124 IRKFNLKSQVKHMANKDVLLDVLEKFTSPTINLTPFEKLDPEGRKLPALSNLGMGYVFEE 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIR+F  E +E A +  TPR+V+ L T ++ +P     K+    + T+YDP CG+GG LT
Sbjct: 184 LIRKFNEENNEEAGEHFTPREVIDLMTHVIFEP----IKDRLPPVMTIYDPACGSGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++ N + D     +    +   G+E+  ET+A+C + M+I+  + +       NI+ GST
Sbjct: 240 ESQNFIKDEDGLIRAKGDVYLFGKEINDETYAICKSDMMIKGNDPE-------NIKNGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GPGL 328
           LS D F GK+F + LSNPP+GK W  ++  + K+       RF                +
Sbjct: 293 LSTDEFAGKQFDFMLSNPPYGKSWASEQRHI-KDGNEVIDSRFRIKLKNYWGVEEDADAI 351

Query: 329 PKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++       G R A V + S LF G AG GES IRR+L+ENDL
Sbjct: 352 PRSSDGQLLFLMEMVSKIKPLAASPSGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDL 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           ++AI+ LP +LF+ T I TY+W+L+N K   R+GKVQLI+A  L+  +R N G K   + 
Sbjct: 412 LDAIIQLPNNLFYNTGITTYIWVLTNSKPANRQGKVQLIDAGPLYRKLRKNLGAKNCELA 471

Query: 446 DDQRRQILDIYVS-------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            +   +I+  Y          ++G  S++ D   FGY ++ + RP R+        +A L
Sbjct: 472 PEHITEIVKTYQDLAIVDRTGDDGLASKVFDNADFGYYKVTIERPKRLKAQFSAERIAEL 531

Query: 499 EADITWRK----------------------------------LSPLHQSFWLDILKPMMQ 524
             D   R+                                  L+   Q   L     + Q
Sbjct: 532 RFDNKLREPMVWAWETYGERVYTDLPALEKDIIDWCEKQELNLARKQQEALLKPDNWLKQ 591

Query: 525 Q--------------IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
           Q                 Y     F +E     E K L +K S S     ++A    D  
Sbjct: 592 QGLMNTATKLMKAIGTDEYSNFNIFAREVEM--ELKALGLKLSASEKKQIMDAVSWYDAE 649

Query: 571 ADPV----TDVNGEWIPD-------------------------------------TNLTE 589
           A+ V    T + GE + D                                     ++L +
Sbjct: 650 AEKVIKGTTKLKGEKLTDLLEHLNCTEAQLPDFGYFVTGTPDREKPGEYLEYETESDLRD 709

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            ENVP  E I DYF+REV PHV +A+I+         +  ++GYEI+FN++FY+++P R 
Sbjct: 710 TENVPLKEDIHDYFLREVKPHVSEAWINL--------DATKIGYEISFNKYFYRHKPLRD 761

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           +  + A++  +E +   L++ +  
Sbjct: 762 IAAVSADILQLEDESEGLIKAILA 785


>gi|297619042|ref|YP_003707147.1| N-6 DNA methylase [Methanococcus voltae A3]
 gi|297378019|gb|ADI36174.1| N-6 DNA methylase [Methanococcus voltae A3]
          Length = 695

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/715 (33%), Positives = 368/715 (51%), Gaps = 84/715 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIWK AE L G +K   +G VILP  +LRR +C L   + +V E+         D+E+
Sbjct: 8   VNFIWKIAELLRGAYKPEKYGDVILPMAVLRRFDCLLADKKESVLERAK-----ETDVEA 62

Query: 72  FVK-VAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +  VAGY F N S++    L   S N   N + YI  FS N + I + F+F   I +LE
Sbjct: 63  ILNNVAGYEFSNKSKFDFEKLKNDSDNIETNFKDYIKGFSSNIRTIIDKFEFDKEIKKLE 122

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  LLY + K F+ I+LHP+ V +  M  I+E LIRRF       A D  TPR+V+ L  
Sbjct: 123 ENNLLYLVVKEFNSIDLHPNVVSNVEMGYIFEELIRRFSENA--EAGDHYTPREVIELMV 180

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+ +  +   +E  G I T+ D  CGTGG L+ A N++        +       GQEL 
Sbjct: 181 NLIFNGLEDEIREE-GRIFTVGDFACGTGGMLSVATNYIKKLNPGATVE----LFGQELN 235

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
            +++AVC + MLI+   +        NI  G++L+ D    +   + L NPPFG  W+KD
Sbjct: 236 NQSYAVCCSDMLIKGQSA-------GNIAFGNSLTADKHVNRDVQFALMNPPFGVDWKKD 288

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           KDA+++E K    GRFG GLP+ SDGS+LFL H+ +K+      G R AI+ + SPLF G
Sbjct: 289 KDAIDEEAKKEFNGRFGAGLPRTSDGSLLFLQHMVSKMRHD-EKGSRMAIIFNGSPLFTG 347

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------RRGKV 422
            AGSGESEIRRW++ENDL+E I+ALPTDLF+ T IATY+WI++NRK +       R GK+
Sbjct: 348 DAGSGESEIRRWIIENDLLEGIIALPTDLFYNTGIATYIWIITNRKNDNILNGPVRSGKI 407

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT+ +  +R   G KR  I+D    +I  +Y   +  ++ ++ D + FGY ++ + 
Sbjct: 408 QLIDATNFYHKMRKSLGSKRNKISDSDITEITRLYGEFKENEYCKIFDNKDFGYLKVTIE 467

Query: 482 RPLRMSFILDKTGLARLEADITWRKL-----------------------SPLHQSFWLDI 518
           RPL+++F + +  +  + ++  + KL                       + L + +    
Sbjct: 468 RPLKLNFQISEERIENIYSESAFSKLYDEDKVEELELKKQKQIIKAKENTELEKQYVGKS 527

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK---ASKSFIVAFINAFGRKDPRADPVT 575
           ++  +  +      E   K   + ++  + K+K    SK    A +     +D  AD   
Sbjct: 528 IQDNIIDVLKNNIDEKIYKNREEFDKELSKKLKRLDLSKPVYKAVLMGLSERDETADYCY 587

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQD-------------------YFVREVSPHVPDAYI 616
               +   D++L + E +P    +++                   Y   EV PHV + +I
Sbjct: 588 KGKSK-EADSDLRDTEMIPLSMDVEEYNKKDSSKHIAKEKENILNYLEAEVKPHVNEYWI 646

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                   D +  ++GYEI F R FY+++  R   +I  E++ +E +I T ++++
Sbjct: 647 --------DDKKTKIGYEIPFTRHFYKFEELRPFAEIMKEVEELETEIQTDVKKV 693


>gi|332666807|ref|YP_004449595.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335621|gb|AEE52722.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 788

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/801 (29%), Positives = 365/801 (45%), Gaps = 155/801 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEELAFQRDEA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             +  D       +GY FYNTS+++L  L  T T N      N E Y+  FS N K I E
Sbjct: 66  KFTEWDENGLRDASGYVFYNTSKWTLQLLKDTATNNQQILQANFEDYLNGFSPNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F   S +  +    +L  + + F+   I L P    D             M  ++E LI
Sbjct: 126 KFKLKSQVRHMAAKDVLLDVLEKFTSPAINLTPFEKTDPDGRKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ +P           + T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLIFEPVARQL----PPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V D     +    +  +G+E+  ET+A+C + M+I+  + +       NI+ GSTLS
Sbjct: 242 QNFVKDEEGIIQAKGDVYLYGKEINDETYAICKSDMMIKGNDPE-------NIRVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GPGLPK 330
            D F GK F + LSNPP+GK W  ++  + K+ K     RF                 P+
Sbjct: 295 TDEFAGKTFDFMLSNPPYGKSWASEQKYI-KDGKEVIDSRFKIKLTDYWGQVEEADATPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++       G R A V + S LF G AG GES IRR+L+END +E
Sbjct: 354 SSDGQLLFLMEMVNKMKPLSQSPLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LSN K   R+GKVQLI+A  L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKAASRQGKVQLIDAGLLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYVSRENGKFS-------------RMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
             R+I+ +Y   +  + S             ++ D   FGY ++ + RP R+        
Sbjct: 474 HIREIVSVYEEMQEIERSINPSTQEGEGIAAKVFDNADFGYYKVSIERPKRLKAQFTLER 533

Query: 495 LARLEADITWRK----------------LSPLHQSFWLDILKP----------------- 521
           +A L  D + R+                L+   +       K                  
Sbjct: 534 IAELRFDKSLREPMVWAYETYGEAVYTDLAKHEKDILDWCEKQDLNLNAKQSKALVSPAL 593

Query: 522 -------------MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                        +MQ I    + +    ++      KT K K S S   + +NA    D
Sbjct: 594 WHKQLELLALAAELMQAIGGSAYTDFNRFKNEVDAVLKTKKTKLSASEKNSILNAVSWYD 653

Query: 569 PRADPV---------------------------------TDVNGE---WIPDTNLTEYEN 592
             A  V                                 +D  GE   +  +++L + EN
Sbjct: 654 AEAAKVEKATLKLTGDKLAQLLAQLGCTEAQLPDYGYYPSDKKGEYLTYETESDLRDTEN 713

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E+   YF+REV PHVP+A+I+         +  ++GYEI+FN++FY+++P R +++
Sbjct: 714 VPLKENSYRYFLREVKPHVPEAWINL--------DATKIGYEISFNKYFYRHKPLRSIEE 765

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           + A++  +E++   L+ E+ +
Sbjct: 766 VSADILKLESESDGLIREILS 786


>gi|71737179|ref|YP_272418.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557732|gb|AAZ36943.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 801

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/802 (29%), Positives = 360/802 (44%), Gaps = 156/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++ V E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKAKVMEELAFQQGEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D  +    +GY FYNTS+++LS L  T T N      N+E Y+  FSDN K I  
Sbjct: 66  SQTELDDSALRSASGYVFYNTSKWTLSQLQKTATNNQQILLNNVEEYLDGFSDNVKDIVR 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S +  +    +L  + + F+   + L P  + D             M  ++E LI
Sbjct: 126 RFNLKSQMRHMASKDVLLDVLEKFTSPYVNLTPTDIEDPEGNRLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+S   + T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDSLPPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +          +  +G+E+  ET+A+C + M+I+        +   +I+ GSTLS
Sbjct: 242 QNFIEEKYPDPTTQRDIHLYGKEINDETYAICKSDMMIKG-------NNPAHIRPGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F G RF + LSNPP+GK W  ++  + K+       RF                 P+
Sbjct: 295 VDEFAGSRFDFMLSNPPYGKSWASEQKFI-KDCGEVIDPRFKVSLRDYWDNPEMQDATPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++    G  G R A V + S LF G AGSGES IRR L+ENDL++
Sbjct: 354 SSDGQLLFLMEMVNKMKASGEGSLGSRIASVHNGSSLFTGDAGSGESNIRRHLIENDLLD 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LS+ K  +RRGKVQLI+A+ L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSSNKPVQRRGKVQLIDASLLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYVSRE--------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
               I   Y+           +G  +++ D R FGY ++ + RP R         +  L 
Sbjct: 474 HIELITQTYLDLASLDRPAGGDGIAAQVFDNRDFGYHKVSIERPDRRKAQFSAERIETLR 533

Query: 500 ADITWRK-----------------------------------------------LSPLHQ 512
            D   R+                                               L    +
Sbjct: 534 FDKALREPMQWIYQQWGEALYQDEALATHEKAILAWCEEQGLELNIKQRKKLLNLETWAK 593

Query: 513 SFWLDILKPMMQQIYPYGWAESF-----VKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
              L  +   + Q       + F     + + +     K + +K   S     +NA    
Sbjct: 594 QALLVTVANYLMQAIGSDEYDDFNLFAKLVDKVLKQLNKEVGIKLGASERNQVLNAVSWY 653

Query: 568 DPRADPVT---------------------------------DVNGEWIP---DTNLTEYE 591
           D  A  V                                  D  GEWI    +++L + E
Sbjct: 654 DENAVKVLRKVEKFDRAELAALLERLDCIEADLADFGYYPSDKAGEWITYESNSDLRDSE 713

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           ++P  +SI  +F  EV PHV +A+I+         E  ++GYEI+FN++FY++QP R   
Sbjct: 714 SIPLADSIHHFFKAEVQPHVEEAWINL--------ESVKIGYEISFNKYFYKHQPLRSTD 765

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  E+  +E Q   L+ E+  
Sbjct: 766 EVAREIIALEQQAEGLIAEILG 787


>gi|189425260|ref|YP_001952437.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189421519|gb|ACD95917.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 778

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/784 (29%), Positives = 353/784 (45%), Gaps = 131/784 (16%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLA 61
             +   + +FIW  A+D L   FK   +  VILP  +LRRL+  LEPT+ AV +  + L 
Sbjct: 3   QATHNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVLRRLDAVLEPTKQAVLDTKQMLD 62

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFED 117
             G      +  + AG +FYNTS ++L  L S   +     + E Y+  FS N + I E+
Sbjct: 63  DAGITEQKAALCEAAGQAFYNTSRFTLRDLRSRANQQQLKLDFEDYLDGFSQNVQDILEN 122

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLI 163
           F F + I+ L KA  +  + + F    I + P+ V             +  M  ++E L+
Sbjct: 123 FKFRNQISTLSKADAIGTLIEKFLDPDINVSPNPVLNSDGSVRLPAMDNHSMGTVFEELV 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  + +E A +  TPRD V L   L+  P     +        LYD  CGTGG LT A
Sbjct: 183 RKFNEDNNEEAGEHWTPRDAVKLMARLIFLPIADQVQSGSYQ---LYDGACGTGGMLTLA 239

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + +  +           GQE+ PET+A+C A ML++    +    +     + STL+
Sbjct: 240 EETLLELTAAQDKQVKTYLFGQEINPETYAICKADMLMKGEGENADHIV--GGAEWSTLA 297

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISDG 334
            D F    F + LSNPP+GK W+KD D +          RF            + + SDG
Sbjct: 298 HDAFPAHEFDFMLSNPPYGKSWKKDLDTMGG-KDGIRDSRFKITHADDTDYSLITRSSDG 356

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            M+FL ++  K+      G R A V + S LF G AG GES IRRW++E D +EAIVALP
Sbjct: 357 QMMFLANMVAKMNHTSRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIEKDWLEAIVALP 416

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            +LF+ T IATY+W+LSNRK + R+GKVQLI+AT  +  +R N GKK   ++DD  ++I 
Sbjct: 417 LNLFYNTGIATYIWVLSNRKPDHRKGKVQLIDATAWFKPLRKNLGKKNCELSDDDIQRIC 476

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-SPLHQ 512
           D Y S    + S++   + FGY ++ V RPLR+   L    +  L       ++ + L++
Sbjct: 477 DTYQSFTESEQSKIFQNKAFGYWKVTVERPLRLHSQLSLPAIESLRFASGDEEIRTQLYE 536

Query: 513 SF-------WLDILKPMMQQIYPYGWAESFVKESIKSNEA-------------------- 545
            F       +  I K + +++  +G  +   ++     +                     
Sbjct: 537 EFGDVLFEQFSSIEKELAKRLAEWGAGDDEGEDDEAPRKGLSEKKKKKLLDAGTWARDAR 596

Query: 546 --------------------KTLKVKASKSFIVAFIN-----------AFGRKDPRADPV 574
                                  ++    +                  A   +   A PV
Sbjct: 597 LMETAQSLRDLLGGDLYEDHNRFRIDVDTALKKLGRKLPAAELKLILKAVSWRVETAPPV 656

Query: 575 TD---VNGEWIPDT----------------------NLTEYENVPYLES--IQDYFVREV 607
                  G+  PD                       +L + E VP LE   I+ +  REV
Sbjct: 657 IARLHKPGKATPDPLRGLYPVTIDGKACVVEYEPDTDLRDTEQVPLLEDGGIEAFIQREV 716

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            P+ PDA++D+           ++GYEI+F R FY+ QP R L++I A++  VE +   L
Sbjct: 717 LPYTPDAWLDE--------SKTKIGYEISFTRHFYKPQPLRTLEEIRADILAVEQEAEGL 768

Query: 668 LEEM 671
           L+++
Sbjct: 769 LDDL 772


>gi|110639316|ref|YP_679525.1| restriction/modification methyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281997|gb|ABG60183.1| restriction/modification methyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 783

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 237/797 (29%), Positives = 365/797 (45%), Gaps = 151/797 (18%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEEMAFQKDEA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             +  D     + +GY FYNTSE++L  L  T T N      N E Y+  +S N K I E
Sbjct: 66  KFTEWDENGLRQASGYVFYNTSEWTLQRLHDTATNNQQILQANFEDYLKGYSGNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+    +  +    +L  + + F+   I L P    D             M  ++E LI
Sbjct: 126 KFNLKRQVQHMASKDVLLNVLEKFTSSYINLTPFEKNDPDGRKLPPLSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  + +E A +  TPR+V+ L T ++ +P     K+    + T+YDP CG+GG LT++
Sbjct: 186 RKFNEDNNEEAGEHFTPREVIDLMTHIIFEP----IKDKLPPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + D     K    +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFIKDEDGEIKAKGDVYLYGKEINDETYAICKSDMMIKG-------NNPENIRVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GPGLPK 330
            + F G  F + LSNPP+GK W  ++  + K+ K+    RF                 P+
Sbjct: 295 TNEFAGTTFDFMLSNPPYGKSWASEQKFI-KDGKDIIDPRFKIKLQNYWGIEEEADATPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++       G R A V + S LF G AG GES IRR+++END +E
Sbjct: 354 SSDGQLLFLMEMVNKMKPLSQSKLGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDWLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV +P +LF+ T I TY+WILSN K+ +R+GKVQLI+A  ++  +R N G K      +
Sbjct: 414 AIVQMPNNLFYNTGITTYIWILSNNKSNKRKGKVQLIDAGFMFRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIY---------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
             R+I+ +Y         V  E G  S++ D   FGY ++ + RP R+        +  L
Sbjct: 474 HIREIVSVYEKMQAVDRKVDDEQGISSKVFDNTDFGYYKVTIERPKRLKAQFTAERIEEL 533

Query: 499 EADITWRK-------------------------------------------LSPLHQSFW 515
             D T R+                                           ++       
Sbjct: 534 RFDKTLREPMAWAYETYREKVYTEIAKHEKAIIEWCEKNELNLNAKQTKTLVTQATWQKQ 593

Query: 516 LDILKPMMQQIYPYGWAESFVKESIK---SNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           LD++   M  +   G  E       K          K+K S S   A +NA    D  A+
Sbjct: 594 LDLVTLAMDLMKKIGSKEFNDFNLFKERVDEALAAKKLKLSSSEKNAILNAVSWYDADAE 653

Query: 573 PVTD---------------------------------VNG---EWIPDTNLTEYENVPYL 596
            V                                     G   E+  ++NL + ENVP  
Sbjct: 654 KVVKGTTKLAGDKLKELLAYLGCKEKELGDYGYFATEKKGEYLEYETESNLRDTENVPLK 713

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           E+I  YF+REV PHV +A+I+         +  ++GYEI+FN++FY+++P R ++D+ A+
Sbjct: 714 EAIYTYFLREVKPHVGEAWINL--------DATKIGYEISFNKYFYKHKPLRSIEDVTAD 765

Query: 657 LKGVEAQIATLLEEMAT 673
           +  +E +   L+ E+  
Sbjct: 766 ILALEKESDGLIAEILG 782


>gi|217979674|ref|YP_002363821.1| N-6 DNA methylase [Methylocella silvestris BL2]
 gi|217505050|gb|ACK52459.1| N-6 DNA methylase [Methylocella silvestris BL2]
          Length = 647

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/690 (31%), Positives = 326/690 (47%), Gaps = 80/690 (11%)

Query: 17  KNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
             A+D L   +    +  VILP  +LRRL+  LEPT++AV   +  L   G      +  
Sbjct: 2   GIADDALRDLYVRGKYRDVILPMMVLRRLDAVLEPTKAAVLSMKDNLDKAGITNQDAALR 61

Query: 74  KVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + AG +FYNTS + L  L +       + + E+++  FS N + I ++F+F + + +L K
Sbjct: 62  QAAGQAFYNTSRFKLRDLRNRASQSQLKADFEAFLDGFSPNVQEILDNFEFRNQLPKLSK 121

Query: 130 AGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIRRFGSEVSEGAE 175
           A +L  + + F  S I L P  V             +  M  I+E L+RRF    +E A 
Sbjct: 122 ADVLGTLIEKFLDSSINLGPKPVLNGDGSVKHPGLDNHAMGTIFEELVRRFNEANNEEAG 181

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD V L   L+  P     +    +   LYD  CGTGG LT A   + +    H 
Sbjct: 182 EHWTPRDAVKLMAKLIFVPIADQIQSGTYL---LYDGACGTGGMLTVAEETLNELAEKHG 238

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   GQE+  ET+A+  A +L++        D      + STL+ D F  K F + 
Sbjct: 239 KQVSTHLFGQEINGETYAIAKADLLLKG--EGEEADNIVGGPEWSTLANDAFPSKEFDFM 296

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISDGSMLFLMHLANKL 346
           LSNPP+GK W+ D++ +          RF            + + SDG MLFL ++ +K+
Sbjct: 297 LSNPPYGKSWKSDQERMGG-KSGMRDPRFVIEHAGDAEYSLVTRSSDGQMLFLANMLSKM 355

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     G R A V + S LF G AGSGES +RRW++END  EAIVALP ++F+ T IATY
Sbjct: 356 KHNTPLGSRIAEVHNGSSLFTGDAGSGESNVRRWIIENDWCEAIVALPLNMFYNTGIATY 415

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +W+LSNRK   RRGKVQLI+AT  +  +R N GKK   + D    +IL  +++ +  + S
Sbjct: 416 VWVLSNRKPGNRRGKVQLIDATAWFRPLRKNLGKKNCELADADIERILQAFIAFQPTEQS 475

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           R+ D   FGY ++ V RPLR   I   T  A    +I   K           +++ +   
Sbjct: 476 RIFDNAEFGYSKVTVERPLRARGI--DTTRAYAPKEIKALKDDGRTAEDGAPVIRRIH-- 531

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
                                    K  K         F         V     E+ PD+
Sbjct: 532 -------------------------KPGKVEADPLRGLFPLTIDGKRCVV----EYEPDS 562

Query: 586 NLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           +L + E VP  E   I+ +  REV PH PDA+ID+            +GYE++F R+FY+
Sbjct: 563 DLRDTETVPLKEPGGIEAFIRREVLPHAPDAWIDEAK--------TTIGYEVSFTRYFYK 614

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            QP R L  I A++  +E +   L+ ++  
Sbjct: 615 PQPLRPLDAIRADILALERETDGLMADIIG 644


>gi|255308176|ref|ZP_05352347.1| N-6 DNA methylase [Clostridium difficile ATCC 43255]
          Length = 675

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/687 (32%), Positives = 372/687 (54%), Gaps = 48/687 (6%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNID 68
            F+W  AE L G +K  D+ KV+LP  ++RR +C L+     + +    +Y        D
Sbjct: 11  AFLWNIAESLRGTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDFLPEEEKD 70

Query: 69  LESFVKVAGYS-----FYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
               V +         FYN S+++   L   S N ++N E Y+  FS++ K I   F F 
Sbjct: 71  ELVIVDLKENHNIDLQFYNVSDFTWKKLLDDSENIKSNFEEYLNGFSNSVKEIIGKFKFK 130

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             IA+L+K   LY +      ++LH ++V +  M  IYE ++RRF    +  A +  TPR
Sbjct: 131 DEIAQLDKKDKLYAVLSKMYEVDLHINSVSNNEMGYIYEEMLRRFTE--NSAAGEQYTPR 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   +L    +    E   +I ++ D  CGTGG L+ A ++V           I+ 
Sbjct: 189 EVIRLCMEMLFMGKENFLTEEGKVI-SIADFCCGTGGMLSIAEDYVEKVNP----SAIVN 243

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL  E+ A+C A M+++    D       NI+ G+TL++D F+G++  + +SNPPF
Sbjct: 244 VYGQELLDESFAICQADMIMKGQNPD-------NIRLGNTLTQDRFSGEKIRFLISNPPF 296

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G  W+ ++  V++E   G  GRFG G P++SDGS+LFL ++ +K+      G R AI+ +
Sbjct: 297 GVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKM-YDDEEGSRIAIIFN 355

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGES IR+W++E DL+E I+ALPTD+F+ T IATY+W+L+N+K ++R+GK
Sbjct: 356 GSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYIWVLTNKKEDKRKGK 415

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +QL+NA++ +  +R   G KR+ I+ +Q  +I +IY   E  + S++ D   FGYR++ +
Sbjct: 416 IQLVNASEYYQLMRKSLGNKRKEISLEQIEEIKEIYERFEESENSKIFDNEGFGYRKVTI 475

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDILKPMMQQI 526
            RPL++SF +++  +  ++    +  LS                 +     +LK +    
Sbjct: 476 ERPLKLSFRVNEEAIENVKNTTQFINLSVSKKKDEEVKVKEEAEGRVKQDKLLKLLESFD 535

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             + + +         +++K   V  S   I A +NA G ++  A    D  G    D++
Sbjct: 536 SEFEYMKRDKFIKDLKSKSKLYDVALSAGLIKAIVNAIGVRNEDAVVCKDAKGNIESDSS 595

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + E++   E + +YF +EV PHV DAYID+  ID        +GYEI F R+FY+Y+ 
Sbjct: 596 LKDTESIALKEDVYEYFEKEVKPHVEDAYIDESSIDN-------IGYEIPFTRYFYKYEK 648

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            +   DI  E++ +E++IA  + ++  
Sbjct: 649 LKSFDDIMKEVESLESEIALEIRKVLG 675


>gi|163754486|ref|ZP_02161608.1| restriction/modification methyltransferase [Kordia algicida OT-1]
 gi|161325427|gb|EDP96754.1| restriction/modification methyltransferase [Kordia algicida OT-1]
          Length = 737

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/755 (31%), Positives = 360/755 (47%), Gaps = 107/755 (14%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + +FIW  A+D L  DF    +  +ILPFT+LRRL+  L PT+  V + Y   
Sbjct: 2   NNKVHNQIVSFIWSIADDVLRDDFVRGKYRDIILPFTVLRRLDALLVPTKEDVLKGYKFL 61

Query: 63  GGSN-IDLESFVKVAGYSFYNTSEYSLS--------------TLGSTNTRNNLESYIASF 107
             +   DL      +GY F+NTS ++ S              T    N  +NLE Y+  F
Sbjct: 62  KENKIDDLSGLTHQSGYPFFNTSGFTFSNSSLFDSNHPYTALTNDPANIDSNLEEYLDGF 121

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRV----------- 154
           S+N + I + F+    + +L++ GL   + +  +   I L P  + +             
Sbjct: 122 SENIQQIIDRFEIRKQLPKLKENGLTPLLIEKLASKEINLSPVEIKNTKGEVLPPLTNLG 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  ++E LIR+F  E +E A +  TPR+++ L T L+  P     K +     ++YD  C
Sbjct: 182 MGYVFEELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQY---SIYDSAC 238

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GG LT+A  +        K       +GQE+ PET AVC + MLI+        +   
Sbjct: 239 GSGGMLTEAEKYAKRIT---KNKTSFSLYGQEVNPETWAVCNSDMLIKG-------EKDY 288

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE----HKNGELGRFGPGLPK 330
           +I  GSTLS D F  K F + LSNPP+GK W+KD+D++  E    ++  +  RF  GLPK
Sbjct: 289 HIAYGSTLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQTGLPK 348

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           ISDG +LFL ++ +K++     G R A V + S LF G AG GESEIRR+L+E+DL+E I
Sbjct: 349 ISDGQLLFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDLVECI 408

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQR 449
           VALP  +F+ T I TY+WILSNRK + R+GK+QLINA +L T + RN G+K   +     
Sbjct: 409 VALPEKIFYNTGIPTYIWILSNRKEKRRQGKIQLINALELSTPLRRNLGEKNCEMQPSHI 468

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL----------- 498
           +QI D+Y++ +    S++ D   FGY  + + RPLR         +  L           
Sbjct: 469 KQIEDLYLNFKETNISKVFDNEDFGYYDVTIERPLRYKSQFTNEAIENLRYLNTIADEMK 528

Query: 499 ------------------------------------EADITWRKLSPLHQSFWLDILKPM 522
                                                    +   +   Q   + I K +
Sbjct: 529 WMYAQFGDNLYEGISKEIKQKTELWLKDEDIKISTANKKKLFNNATWKTQKELMRIAKDI 588

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE-- 580
              I    +    +         KTL  K S +     + A   KD  A+PV     +  
Sbjct: 589 FSNIGDKLFDNFNLFNKEVDKVLKTLSYKVSATNKKKVLLAVSWKDEEAEPVIKKKAKDG 648

Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              +  D++L + E VP  E+I+DYF REV P+VPDA+I+   I +        GY I+F
Sbjct: 649 TIIYEADSDLRDTEIVPLNENIEDYFNREVIPYVPDAWINYDKITK--------GYMISF 700

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            R+FY Y P + L+ I  E+  +E +   +LEE+ 
Sbjct: 701 TRYFYNYSPPKDLELIKQEILDLEKETEGILEEII 735


>gi|258513231|ref|YP_003189487.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635134|dbj|BAI01108.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638189|dbj|BAI04156.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641243|dbj|BAI07203.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644298|dbj|BAI10251.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647353|dbj|BAI13299.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650406|dbj|BAI16345.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653397|dbj|BAI19329.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656450|dbj|BAI22375.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 797

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/805 (28%), Positives = 365/805 (45%), Gaps = 155/805 (19%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
              S +SL +FIW+ A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+    
Sbjct: 2   NQTSHSSLVSFIWRIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKDAVLEEVRYQ 61

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAK 112
               G + +D E     +GY F+NTS ++L  L +T T N      N+E Y+  FSDN K
Sbjct: 62  KEDIGVTELDDEPLKDASGYVFFNTSHWTLKKLYNTATNNQQILLANIEDYLDGFSDNVK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIY 159
            I   F+    +  + +  +L  + + F    + L P+ + D             M  ++
Sbjct: 122 EIIGRFNLFEQMRHMAEKQVLLDVIEKFVSPWVNLTPNDIEDPEGNTLPGLSNLGMGYVF 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIR+F  E +E A +  TPR+V+HL T L+ DP     K+    I T+YDP CG+GG 
Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIHLMTHLVFDP----IKDRLPQILTIYDPACGSGGM 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT+A N++ D          +  +G+E+  ET+A+C + M+I+        +  +NI+ G
Sbjct: 238 LTEAQNYITDADGPFHAHGDVYLYGKEINDETYAICKSDMMIKG-------NNPENIRIG 290

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GP 326
           STLS D F+  RF + LSNPP+GK W  +   + K+ K     RF               
Sbjct: 291 STLSTDEFSAHRFDFMLSNPPYGKSWNSEVKYI-KDGKGVIDPRFQVKLADYWGNVETMD 349

Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+++EN
Sbjct: 350 ATPRSSDGQLLFLMEMISKMKPTSASPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIEN 409

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D+++ I+ LP +LF+ T I TY+W+LSN K E RRG+VQLI+A  ++  +R N G K   
Sbjct: 410 DMLDTIIQLPNNLFYNTGITTYIWLLSNAKPEARRGRVQLIDANLMFRKLRKNLGDKNCE 469

Query: 444 INDDQRRQILDIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D+  +QI + +++               G   ++ D   FGY ++ + RP R      
Sbjct: 470 FSDEHIQQITEAFLNFAPVERQIDAAGDPEGIAVQVFDNADFGYHKVTIERPDRRRAAFS 529

Query: 492 KTGLARLEADITWRK-------------------------LSPLHQSFWLDILKPMMQQI 526
              LA L  D + R+                         ++   +   L +      ++
Sbjct: 530 AERLAPLRFDKSLREPMEWLYDEHGDQVYQPGFLKEQAKQITAWCEEAGLTLNAKAKAKL 589

Query: 527 YPYGWAESF-----------------------VKESIKSNEAKTLKVKASKSFIVAFINA 563
               +                               + +   K  K+K   +   A +NA
Sbjct: 590 LDTRYWVKLRDLLATATQIMGDVGLEETDDFNAFRKVVNAAIKARKIKLGVTEKNAILNA 649

Query: 564 FGRKDPRADPVTDVNGE-----------------------------------WIPDTNLT 588
               D  A  V     +                                   +     L 
Sbjct: 650 VSWYDETAQKVIAKKHKLTGAEVEELTTHLGCAAEDLADFGWYRQKDGSYLTYESTAELR 709

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + E+V   ++I  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY+++P R
Sbjct: 710 DAESVALKDNIHRYFLAEVKPHVEEAWINLDSV--------KIGYEISFNKYFYRHKPLR 761

Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673
            L+++  ++  +E +   L+ ++  
Sbjct: 762 SLEEVTQDILALEEKADGLIADILG 786


>gi|259910158|ref|YP_002650514.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965780|emb|CAX57312.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96]
 gi|283480263|emb|CAY76179.1| type I restriction-modification system DNA methylase [Erwinia
           pyrifoliae DSM 12163]
          Length = 793

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/802 (28%), Positives = 362/802 (45%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP + AV  +        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVKFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D    +  +GY FYNTS+++L+ L    T N      N E Y+  FSDN K I  
Sbjct: 66  RATELDDAPLMAASGYVFYNTSKWTLNLLFKAATNNQQILLANFEEYLLGFSDNVKEIVA 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + I  +    +L  + + F    I L    V D             M  ++E LI
Sbjct: 126 CFNLQAQIRHMASKQVLLDVVEKFVSPYINLTHKAVEDPEGYTMPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLVFDP----VKDKLPLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N +            +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFIEAKYPSSN--RDIYLYGKEINDETYAICKSDMMIKG-------NNPENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F  +RF + LSNPP+GK W  ++  + K+  +    RF                 P+
Sbjct: 293 TDEFAAERFDFMLSNPPYGKSWASEQKYI-KDGGDVIDPRFKVRLQDYSGKEETVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END+++
Sbjct: 352 SSDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K ++R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSR------------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I   Y++               G  S++     FGY ++ V RP R      +  +
Sbjct: 472 HIAEIAQTYLACAGVERKLDANHDAVGIASKVFSNDDFGYYKVTVERPDRRKARFTREAI 531

Query: 496 ARLEADITWRK------------------------------------LSPLHQSFWLDIL 519
             L  D    +                                    L+   +S  LD+ 
Sbjct: 532 QPLRFDKQLAEVMAWLYGEHGDKIYEKGFLASVEKATLAWCAERDISLNTKAKSKLLDVK 591

Query: 520 KPMMQQIYPY-----------GWAESF-VKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             +  Q   +           G  + F + ++      K  K+K S +   A +NA    
Sbjct: 592 NWLSLQRVYHTAERLMATLGGGEFDDFNLFKAQVEQVLKAEKIKLSAAEKNAIVNAVSWY 651

Query: 568 DPRADPVTDV----NGEWIPD--------------------------------TNLTEYE 591
           D  A  V +     NG+ + D                                 +L + E
Sbjct: 652 DETAARVINKTVKLNGDKLQDLLARLECEAEDLPDFGFYPSGKKDEYIIYDSSADLRDTE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY  +P R L+
Sbjct: 712 SVPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYHPKPLRSLE 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E Q   L+ ++  
Sbjct: 764 EVAQDIIKLEQQSEGLIAQILG 785


>gi|292490879|ref|YP_003526318.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
 gi|291579474|gb|ADE13931.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
          Length = 799

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 232/803 (28%), Positives = 363/803 (45%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT++AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKAAVLEEVRFQRKEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + ++  +    +GY FYN S+++L  L  T T N      N+E Y++ +S N K I  
Sbjct: 66  KLTELEDSALQAASGYVFYNASKWTLKQLYQTATNNQQILLANVEEYLSGYSGNVKEIIG 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + +  +    +L  + + F+   I L  +   D             M  ++E LI
Sbjct: 126 KFNLKAQVRHMAAKDVLLDVLEKFTSPYINLTHEEAQDPEGNRLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           RRF  E +E A +  TPR+V+ L T L+ DP     K+    + T+YDP CG+GG LT++
Sbjct: 186 RRFNEENNEEAGEHFTPREVIELMTHLVFDP----VKDKLPPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + D     +    +  +G+E+  ET+A+C + M+I+        +   NI+ GSTLS
Sbjct: 242 QNFIKDEEGAIRASGDVYLYGKEINDETYAICKSDMMIKG-------NNPANIRVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F G RF + LSNPP+GK W  ++  + K+       RF                 P+
Sbjct: 295 TDEFAGNRFDFMLSNPPYGKSWAGEQKYI-KDGGEVIDPRFKVQLKDYWGHVETVDAAPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNGG--GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P  GG   R A V + S LF G AGSGES IRR ++ENDL+E
Sbjct: 354 SSDGQLLFLMEMISKMKAPQAGGLGSRIASVHNGSSLFTGDAGSGESNIRRHIIENDLLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LSN K E RRGK QLI+A+ L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKPEHRRGKAQLIDASRLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYV--------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
             R+I   Y+        +   G  +++ D R FGY ++ + RP R         +  L 
Sbjct: 474 HIREITQTYLELASIDRPAGAEGIAAQVFDNRDFGYYKVAIERPDRRKAQFSTERIETLR 533

Query: 500 ADI-----------------------------------------------------TWRK 506
            D                                                      TWRK
Sbjct: 534 FDKALGEPMAWIYGQWGDRVYEKGTLAEHEKAILAWCEEQALNLNAKQRKKLLNLETWRK 593

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
              L Q     +      +   +   ++ V +++K+  AK   VK   S     +NA  +
Sbjct: 594 HHTLVQMAEHLMAVIGTDEFNDFNRFKTRVDKALKAL-AKETGVKLGVSDKNQLLNAVSK 652

Query: 567 KDPRADPVTDVNGEWIPD------------------------------------TNLTEY 590
            D  A+ V     ++  D                                    ++L + 
Sbjct: 653 YDENAEKVIKKVEKFSQDQLRTLLQRLGCEESELADFGYYATEKPDEYLTYESSSDLRDS 712

Query: 591 ENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
           E +P  + I  YF  EV PHV +A+I+   +        ++GYEI+FN++FY++QP R +
Sbjct: 713 ETIPLKDDIHQYFKAEVKPHVSEAWINMDSV--------KIGYEISFNKYFYRHQPLRSM 764

Query: 651 QDIDAELKGVEAQIATLLEEMAT 673
           +++  E+  +E Q   L+ ++  
Sbjct: 765 EEVAREIIALEQQAEGLIADILG 787


>gi|172040758|ref|YP_001800472.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852062|emb|CAQ05038.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 644

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/676 (34%), Positives = 345/676 (51%), Gaps = 46/676 (6%)

Query: 7   SAASL-ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           S A L  + +W  A+  L    +  D+G  ILP T+LRRLEC LEPT+  V +       
Sbjct: 2   STAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILEPTKGEVLDLVEILQE 61

Query: 65  SNIDLESFVKVA----GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDF 118
                E          G SFYN+S   L+ +     +    L  Y+ +FS + + +++ F
Sbjct: 62  EGYSEEMIDWEVRVRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVGAFSSSVRDVWDAF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF+  +  LE A  L+ + K+F+ I++  D +PD  M +++EH++ +      + A  F 
Sbjct: 122 DFAVKMKTLENASRLWPVVKHFATIDMSLDALPDAQMGDLFEHVMYKAFDTKGKAAGAFY 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD + L   +L   DD       G  RT+YDPT GTGG L  A   + +     ++  
Sbjct: 182 TPRDAIRLMVDILFASDDVGLTAE-GASRTVYDPTAGTGGMLLVAARALKELNPDIEV-- 238

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             V  GQEL    +A+  A +LI+  E D        I+ G TL  DL+ G++F Y LSN
Sbjct: 239 --VLAGQELMSTGYAIGKADLLIQGGEPDA-------IRHGDTLLTDLYEGEQFEYILSN 289

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRA 356
           PPFG  WE  + +V KE       RF  GLP   DG MLFL H+A+KL    P   GGR 
Sbjct: 290 PPFGTDWEVQQQSV-KEQAKVPGSRFSHGLPSKDDGQMLFLAHVASKLMPAGPNGAGGRG 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V + SPLF G   SG  +IR WLLENDL++AI+ LPT++F+ T I+TY+WIL   K E
Sbjct: 349 AVVSNGSPLFTGAPESGPDKIRAWLLENDLVDAIIQLPTNMFYGTGISTYVWILDTNKEE 408

Query: 417 ERRGKVQLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+G VQLI+A++ W    +  G+KRR + +  R+++L+ Y + E+ + S++L     G+
Sbjct: 409 HRKGFVQLIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAAFEDTEISKVLTPADLGF 468

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           R +KV +  R+   +    +A++   +  +   P H     D+       +         
Sbjct: 469 RDVKVTKQKRLRVAVTPEAVAQV---LEHKSAVPEHAEVLADVADVKFNDL--------- 516

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
             E++K+  AK   VK     I A + A G  D  A+P  D  G  I D   +  E +P 
Sbjct: 517 -PEALKA-AAKKRGVKMLAGMIDAVLEAVGVPDENAEPSVDRKGNPILDPAFSMTERIPL 574

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            E + ++  REV P  PD           D+E  +VGYEI F R FY+  P R L++IDA
Sbjct: 575 TEDVGEHMTREVLPFAPD--------VTWDEEAAKVGYEIPFKRVFYRPTPVRSLEEIDA 626

Query: 656 ELKGVEAQIATLLEEM 671
           ++  V  ++A    E+
Sbjct: 627 DVAAVMGRLAEKFAEV 642


>gi|145633686|ref|ZP_01789412.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 3655]
 gi|145635503|ref|ZP_01791203.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittAA]
 gi|229845498|ref|ZP_04465627.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 6P18H1]
 gi|144985446|gb|EDJ92267.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 3655]
 gi|145267268|gb|EDK07272.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittAA]
 gi|229811601|gb|EEP47301.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 6P18H1]
          Length = 793

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 240/810 (29%), Positives = 361/810 (44%), Gaps = 168/810 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ GY FYNTS+++L +L  T +        N E Y+  FS N + I +
Sbjct: 66  AFTELDDLPLKKITGYVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIK 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F  S  I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K     I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKSQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +  L  D                                                    
Sbjct: 534 NIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKAG-----KIPLSATEKKAV 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWIP---D 584
            NA    +  A  V                                     GE+I     
Sbjct: 649 FNAVSWYNENAAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYATGKAGEYIQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           +P R L ++  ++  +E Q   L+ E+  E
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEILGE 790


>gi|310778851|ref|YP_003967184.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926]
 gi|309748174|gb|ADO82836.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926]
          Length = 996

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/753 (31%), Positives = 366/753 (48%), Gaps = 104/753 (13%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
              + ++IW  A+D L   F    +  VILPFT+LRR++  LE ++  V E    F  +N
Sbjct: 262 HNKIVSYIWSIADDVLRDIFVRGKYRDVILPFTVLRRIDILLEESKEKVLEMNKFFEENN 321

Query: 67  -IDLESFVKVAGYSFYNTSEYSLSTL--------------GSTNTRNNLESYIASFSDNA 111
             D     K+ GY FYNTS +++                       +NLE Y+  FS N 
Sbjct: 322 INDKSGLEKITGYPFYNTSPFTMGKNSLKDSEYPFVSLLSDPDKIDSNLEEYLDGFSPNI 381

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNI 158
           + I   F   + +  ++ AG+ + +    +   I L P  V +             M  +
Sbjct: 382 QEIISKFKVRNQLETMQDAGITFGLIDKLTSGSINLSPYEVKNSKGEILPALTNLGMGYV 441

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E LIR+F  E +E A +  TPR+++ L T ++ +P   + KE  G   ++YDP CG+GG
Sbjct: 442 FEELIRKFNEENNEEAGEHFTPREIIKLMTHIIFEPIKDILKEREGARFSIYDPACGSGG 501

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT+A +       +  I       GQE+ PET A+C   MLI+        + + NI  
Sbjct: 502 MLTEAEDFALKITDNKCI---FSLFGQEVNPETWAICTGDMLIKG-------EKASNIGY 551

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG-----ELGRFGPGLPKISD 333
           GSTLS D F G +F + LSNPP+GK W+ D DA+ +          +  RF  GLP ISD
Sbjct: 552 GSTLSNDEFKGHKFDFILSNPPYGKSWKNDVDAIVENRGKKGKEIIKDPRFKVGLPTISD 611

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL+++ +K++     G R A V + S LF G AG GESEIR+ +LENDL+E I+AL
Sbjct: 612 GQLLFLVNMISKMKNDTELGSRIASVHNGSSLFTGDAGQGESEIRKMILENDLLECIIAL 671

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
            T++F+ T I TY+WILSNRK E R+GKVQLINA D++T +R N G+K   +   Q   I
Sbjct: 672 STNIFYNTGIPTYIWILSNRKEERRKGKVQLINAIDIYTPLRKNLGQKNCELTKTQIDSI 731

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR------- 505
             IY+  +  + S++ D   FGY +I V RPLR+   +    +  L  + T         
Sbjct: 732 TKIYLDFKKTETSKIFDNEDFGYNKIIVERPLRLKAKITNEAIESLRYEKTIIDEAKWIY 791

Query: 506 ---------------------------KLSPLH------------QSFWLDILKPMMQQI 526
                                      K+SP +            Q   + I + ++++I
Sbjct: 792 RKYGDKVYDGLKDVKKDIENWIEKNEIKISPANKKKIFDVNVWKSQEELMKITEQLLEEI 851

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE-----W 581
               +      + +  +    L +K  K  +    NA   KD   +PV     +     +
Sbjct: 852 GEIEFDNFNTFKDLIGDTLNKLDIKIGKKDLDLIFNAITWKDEEGEPVIKKVEKDGTIIY 911

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
             D++L + E+VP  E I +YF REV  ++PDA+ID+           + GY I+F R+F
Sbjct: 912 EADSDLRDSESVPLNEDIHEYFEREVLNYIPDAWIDE--------SKTQKGYSISFTRYF 963

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y + P R L+ I +E++ ++ +   ++EE   +
Sbjct: 964 YNFTPPRSLEAIASEIEKLQEETEGIMEEFLND 996


>gi|113477872|ref|YP_723933.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
 gi|110168920|gb|ABG53460.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
          Length = 677

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/699 (32%), Positives = 349/699 (49%), Gaps = 59/699 (8%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
              + +FIW  A+D L   +    +  VILP T++RRL+C LEPT++AV ++   +    
Sbjct: 6   HNGIVSFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDCLLEPTKAAVLKENNFYENME 65

Query: 67  -IDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDFDFSST 123
             D     +   Y FYNTS ++L  L       + NL  Y+  FSDN + I   F F + 
Sbjct: 66  ISDKSGLTEFTKYPFYNTSGFTLKKLLDEPRSIKENLIDYLNGFSDNVQEIINKFKFRNQ 125

Query: 124 IARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNIYEHLIRRFGSE 169
           +  L +   LY + + F  S I L P+             + +  M  ++E LIR+F  E
Sbjct: 126 LETLVEHKRLYALIQKFTDSDINLSPEPRKDKKGKVIQPGLSNLGMGYVFEELIRKFNEE 185

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRD++ L   L+  P     K +  +   +YD  CG+GG LT+A N + +
Sbjct: 186 NNEEAGEHFTPRDIIKLMVNLIFMPVKDQIKNTTYL---VYDCACGSGGMLTEAENFLLE 242

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +      ++   GQE+ PET+A+C A MLI+  E+D       NI+  STL+ D F  
Sbjct: 243 LATGMGKKVVIHLFGQEVNPETYAICQADMLIKVKETD-------NIKYASTLASDGFPD 295

Query: 290 KRFHYCLSNPPFGKKWEKDKDAV----EKEHKNGELGRFGPG-----LPKISDGSMLFLM 340
             F + L+NPP+GK W+ D+D +    +KE K+        G     +P+ SDG +LFL+
Sbjct: 296 FTFDFMLANPPYGKSWKVDQDKILVGRKKEVKDNRFLVKHQGEELQLIPRSSDGQLLFLV 355

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           +  +K++     G R AIV + S LF G AGSGES IRRW++END +E IV LP ++F+ 
Sbjct: 356 NKLSKMKDSTKLGSRIAIVHNGSALFTGDAGSGESNIRRWIIENDWLECIVGLPLNMFYN 415

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR 459
           T IATY+WI+SN+K+ ERRGKVQLI+  + +  +R   G K   +  +   +I + ++  
Sbjct: 416 TGIATYIWIISNKKSVERRGKVQLIDGREWYGKLRKSLGSKSCELRGEDIDRITEEFLDF 475

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
                SR+ D   FG+ +I V RPLR SF +    +      +             L ++
Sbjct: 476 SESDNSRIFDNEDFGFHKIVVERPLRFSFQVTAARVQEFGEKMGD---------DLLGVV 526

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
             +          +  + +       K       K  +      F  KD R + V     
Sbjct: 527 DILRGLFGEEVQWDFNLVKRDFEKALKVEGWNLKKRDLDLIYQIFTEKDERGEAVILKQT 586

Query: 580 E----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           +    +  D  L + ENVP  E+IQ+YF REV PHV DA+ID   +          GYEI
Sbjct: 587 KKGVVYQADAELRDTENVPLKENIQEYFEREVLPHVSDAWIDFDKV--------VRGYEI 638

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           +F ++FY++Q  R L+DI  EL  +E +   +L E+  E
Sbjct: 639 SFTKYFYKFQKLRSLEDIVEELLELEKETEGILREIVFE 677


>gi|257091989|ref|YP_003165630.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044513|gb|ACV33701.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 687

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 235/703 (33%), Positives = 355/703 (50%), Gaps = 82/703 (11%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFVKV-------AGYSFYNTSEY 86
           +LP T+LRR +  L P++ AV +++         ++++ +             F+N S+ 
Sbjct: 1   MLPLTVLRRFDAVLAPSKEAVLKRHAELSSKGIPNIDAILNYRAKDEDGTALGFHNHSQL 60

Query: 87  SLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
               L     N   +L  YIA FS+N + IFE F+F   I +LE++  LY++   F+ I+
Sbjct: 61  DFPELKGDPDNIGRHLADYIAGFSENIRKIFERFEFEKEIEKLEESNRLYQVVAQFAEID 120

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LHP  V +  M  ++E LIRRF    +E A D  TPR+V+ L   LLL+PD ++  ++ G
Sbjct: 121 LHPRKVDNITMGLVFEDLIRRFNEAANETAGDHFTPREVIQLMVNLLLEPDTSVLTQA-G 179

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +I T+ DP CGTGG L +A N +      H     +   GQ+  P ++AV  + +LI+  
Sbjct: 180 VIVTICDPACGTGGMLAEAQNWIRA----HNEQATVKVFGQDYNPRSYAVAASDLLIKG- 234

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                      +  G+TL+ D F   RF Y L+NPPFG  W+ ++  +++          
Sbjct: 235 ------HKDGQVMLGNTLTDDPFPEHRFDYLLANPPFGVDWKAERKVIDRWPNFRGYSGK 288

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNG-----GGRAAIVLSSSPLFNGRAGSGESEIRR 379
            P   +I+DG++LFL+++ +K +   +G     G R AIV + SPLF G AGSGESEIRR
Sbjct: 289 LP---RINDGALLFLLYMMSKFQDYKSGDRDKPGSRTAIVFNGSPLFTGGAGSGESEIRR 345

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEG 438
           W++E D +EAIVALP  +F+ T I T++W+++NRK   R+ K+QLI+A + +T + R+ G
Sbjct: 346 WIIERDQLEAIVALPEQMFYNTGIGTFIWVVTNRKAAHRKCKIQLIDARERYTPMKRSLG 405

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            KRR ++      +   + + EN K SR+ D   FGYRRI VLRPLR+ F +      R 
Sbjct: 406 DKRRYLDQTALDAVTREHGAMENSKTSRVFDNTDFGYRRITVLRPLRLRFEITDEARERF 465

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
                      L         +P++     +   +  V  ++  +     K     +   
Sbjct: 466 LNTCPDL-FDALQAVQDELGNEPLLDWNQAWDTIQQ-VFRTLPDDVEGWAKGAKGTAHKK 523

Query: 559 AFINAFGRKDPRADPVTDVNG--------------------------------------- 579
            F + F   DP A PV   +                                        
Sbjct: 524 IFRDCFTTVDPDAAPVIAKHHKVEPLNRAALFPGQALPADITKDELYALLGLHKLPSPRA 583

Query: 580 ----------EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
                     E+ PD  L + E+VP  E I  Y +REV P+V DA+ID+  +DE+D  IG
Sbjct: 584 RGAGAEGVCIEYEPDPALKDTESVPLKEDIVSYVLREVRPYVADAWIDRETLDEQDGGIG 643

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +VGYEINFNR F+QYQP R L++IDAEL  VE +I  LL E+ 
Sbjct: 644 KVGYEINFNRVFFQYQPPRPLREIDAELAEVEKRILGLLSEVT 686


>gi|260581979|ref|ZP_05849774.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094869|gb|EEW78762.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 790

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/807 (29%), Positives = 357/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTALKLLEHFGEQQFDDFNQFKQAVECRLKAE-----KIPLSATEKKAV 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GE---WIPD 584
            NA    D  A  V                                     GE   +   
Sbjct: 649 FNAVSWYDENAAKVIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYLQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L D+  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLADVAQDILALEKQTDGLISEI 787


>gi|187779697|ref|ZP_02996170.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC
           15579]
 gi|187773322|gb|EDU37124.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC
           15579]
          Length = 704

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/724 (31%), Positives = 351/724 (48%), Gaps = 82/724 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGS 65
             + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV   +K L   G 
Sbjct: 3   NQIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEPTKEAVLQMKKKLDKAGI 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFEDFDFS 121
                +   VAG +F NTS + L  L S   +     +  +Y+  FS N + I E F F 
Sbjct: 63  VNQTSALCSVAGQAFCNTSPFMLKDLKSRVKQQQLKLDFITYLDGFSPNVQEILEKFKFR 122

Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTV------------PDRVMSNIYEHLIRRFG 167
           + I  + +A +L  + + F    I L  + V             +  M +I+E LI +F 
Sbjct: 123 NQIDTMIEADILGSVIEKFVDPRINLSVEPVLDDNGEVKLPALENHTMGSIFEELIHKFN 182

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E +E A +  TPR VV L   +   P     K+   +   +YD  CGTGG LT A   +
Sbjct: 183 EENNEQAGEHFTPRHVVELMADITFLPVVDKIKDGSYL---VYDGACGTGGMLTIAEKRL 239

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +     +  +GQE+ PET+A+  A ML++          + NI  GSTLS D F
Sbjct: 240 QELAKENNKQISINLYGQEINPETYAITKADMLLKG-----EGKQADNIAYGSTLSNDKF 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFG---------PGLPKISDGSML 337
           +   F + LSNPP+GK W+ D + +  KEH      RF            +P+ SDG +L
Sbjct: 295 STTNFDFMLSNPPYGKSWKTDLNKLGGKEHITDP--RFAVTHNNESDFKMIPRSSDGQLL 352

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +  +K++     G R   V + S LF G AG GES +RR+++END +EAI+ALP ++
Sbjct: 353 FLANKISKMKQNTELGSRIVEVHNGSSLFTGDAGQGESNLRRYIIENDWLEAIIALPENM 412

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T IAT++W+++NRK + R GKVQLI+ATDL + +R N+G K   +  + R+ I DI 
Sbjct: 413 FYNTGIATFIWVVANRKPKHRMGKVQLIDATDLKSPLRKNQGNKNCELTPEIRKVITDIL 472

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           ++ E    S++ D + FGY +I V +PLR+S  L K  +         +K + L    + 
Sbjct: 473 INFEENDKSKIFDNKEFGYWKITVEKPLRLSVDLSKENIEEFSKICEEQKDTELMDIIYT 532

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
              K   +++  Y      +K+      A  L +K S   +    N   + D  A+ V  
Sbjct: 533 LGDKFQHKKLTNYNLFLDELKKI-----ASNLNIKLSSKRLKLVKNNLAKVDEVAEKVIK 587

Query: 577 V-------------------------NGEWIPDTNLTEYENVPY--LESIQDYFVREVSP 609
                                       E+  D+NL + E +P      I+ +F  EV P
Sbjct: 588 RIIKPGKVEKNPLYGLFNENIEDEYHIVEYEADSNLRDTEEIPLLHEGGIEKFFKDEVLP 647

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
              DA+I        DK   ++GY+I+F+++FY+    R L +I A++K +E++   LL 
Sbjct: 648 FNKDAWI--------DKSKTQIGYKISFSKYFYKPIKLRDLNEIKADIKILESETDGLLN 699

Query: 670 EMAT 673
           E+  
Sbjct: 700 EIIG 703


>gi|188535438|ref|YP_001909235.1| type I restriction-modification system, methyltransferase subunit
           [Erwinia tasmaniensis Et1/99]
 gi|188030480|emb|CAO98374.1| type I restriction-modification system, methyltransferase subunit
           [Erwinia tasmaniensis Et1/99]
          Length = 793

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/801 (28%), Positives = 365/801 (45%), Gaps = 156/801 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP + AV  +        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D    +  +GY FYNTS+++L++L  T T        N E Y+  FSDN K I  
Sbjct: 66  QATELDDAPLMAASGYVFYNTSKWTLNSLFKTATNSQQILLANFEEYLLGFSDNVKEIVA 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + I  +    +L  + + F    I L    V D             M  ++E LI
Sbjct: 126 CFNLQAQIRHMAAKQVLLDVVEKFVSPYINLTHKAVDDPDGYSMPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLVFDP----VKDKLPLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N +            +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFIEAKYPSSN--RDIYLYGKEINDETYAICKSDMMIKG-------NNPENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDK-------DAVEKEHKNGELGRFG-----PGLPKI 331
            D F  +RF + LSNPP+GK W  ++       D ++   K      FG        P+ 
Sbjct: 293 TDEFAAQRFDFMLSNPPYGKSWATEQKYIKDGGDVIDPRFKVKLRDYFGKEETVDATPRS 352

Query: 332 SDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END+++A
Sbjct: 353 SDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLDA 412

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           IV LP +LF+ T I TY+W+L+N K+++R+GKVQLI+A+ L+  +R N G K      + 
Sbjct: 413 IVQLPNNLFYNTGITTYIWLLNNNKSQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPEH 472

Query: 449 RRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
             +I   Y++    +             S++     FGY ++ + RP R      +  + 
Sbjct: 473 IAEIAQTYLACTGAERALDANHDAVGIASKVFSNDDFGYYKVTIERPDRRKARFSREAIR 532

Query: 497 RLEADITWRK------------------------------------LSPLHQSFWLDILK 520
            L  D    +                                    L+   +S  LD+  
Sbjct: 533 PLRFDKQLAEVMAWLYAEHGDKVYEKGFLASVEKDTQGWCAERDISLNTKARSKLLDVKN 592

Query: 521 PMMQQIYPY-----------GWAESFVKESIKSNE-AKTLKVKASKSFIVAFINAFGRKD 568
            +  Q   +              + F +   +  +  K  K+K S +   A +NA    D
Sbjct: 593 WLSLQTVYHCAERLMATIGGEEFDDFNRFKAQVEQVLKAEKIKLSAAEKNAILNAVSWYD 652

Query: 569 PRADPVTDV----NGEWIPD--------------------------------TNLTEYEN 592
             A  V +     NG+ + D                                 +L + E+
Sbjct: 653 ESAAKVINKTVKLNGDKLQDLLERLECEAADLPDFGFYPSGKKDEYITYDSSADLRDTES 712

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           +P  +SI  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY+++P R L++
Sbjct: 713 IPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYRHKPLRSLEE 764

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           +  ++  +E Q   L+ ++  
Sbjct: 765 VAQDIIKLEQQSEGLIAQILG 785


>gi|295135946|ref|YP_003586622.1| DNA methylase HsdM [Zunongwangia profunda SM-A87]
 gi|294983961|gb|ADF54426.1| putative DNA methylase HsdM [Zunongwangia profunda SM-A87]
          Length = 784

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 240/800 (30%), Positives = 378/800 (47%), Gaps = 151/800 (18%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+   S + L  FIW  A+D L   +    +  VILP  +LRRL+  LEP++  V ++ 
Sbjct: 1   MTQ--NSHSKLIAFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKKEVMDEV 58

Query: 60  ----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSD 109
               +  G + ++ E     AGY FYNTS+++L  L  T + N      N E YI  FSD
Sbjct: 59  QFQTVEAGFTELESEGLKTAAGYEFYNTSKWTLQLLKDTASNNQSILLANFEDYILGFSD 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MS 156
           N K I   F+    I  +    +L  + + F+   I L P    D             M 
Sbjct: 119 NVKEIISKFNLVRQIKHMATKDVLLDVLEKFTSPRINLTPFEKEDPDGYKLPALSNLGMG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIR+F  E +E A +  TPR+V+ L T L+ +P     K     + T+YDP CG+
Sbjct: 179 YVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFEP----VKHQLPPVMTIYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT++ N + D     +    +   G+E+  ET+A+C + M+I+        +  +NI
Sbjct: 235 GGMLTESQNFIKDEAGAIQAKGDVYLFGKEINDETYAICKSDMMIKG-------NDPQNI 287

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG----------- 325
           + GSTLS D F+ K F + LSNPP+GK W  ++  + K+ K+    RF            
Sbjct: 288 RLGSTLSTDEFSRKNFDFMLSNPPYGKSWASEQKYI-KDGKDIIDPRFTIQLSNYWQETD 346

Query: 326 --PGLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
               +P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+L
Sbjct: 347 TEKAIPRSSDGQLLFLMEMVSKMKNLKQSPLGSRIASVHNGSSLFTGDAGSGESNIRRYL 406

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440
           +ENDL+EAIV LP +LF+ T I TY+W+LSN KT+ER+GKVQLI+A  L+  +R N G+K
Sbjct: 407 IENDLLEAIVQLPNNLFYNTGITTYIWLLSNNKTKERQGKVQLIDAQPLYQKLRKNLGQK 466

Query: 441 RRIINDDQRRQILDIYVS-----RENGK--FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
                 +   +I   +++     RE      S++ +   FGY ++ + RP R+       
Sbjct: 467 NCEFTPEHITEITQTFLNSEAREREEDDQLASKIFNNTDFGYYKVTIERPKRLRSQFTLE 526

Query: 494 GLARL---------------------------------------EADITWRKLSPL---- 510
            +  L                                       +  ++ +K + L    
Sbjct: 527 AIESLRYYSQLQEPMEYAYKTFGKKVYTELPSIKTEILNWCEANDISLSSKKKAQLTAKK 586

Query: 511 ---HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
                 F +D    + + I    + +        +   K L++K S +   A ++A    
Sbjct: 587 TWEDAKFLVDTATKLYEAIGDAVFMDFNHFSKQVNKALKKLEIKLSNAQKKAILDAVSVY 646

Query: 568 DPRADPVTDV----NGE--------------------------------WIPDTNLTEYE 591
           DP A+ V        GE                                +  +++L +YE
Sbjct: 647 DPEAEKVIKTTKILKGEKLENLCAHLDCTPDQLSHFGYFPSGNKGTYTIYESESDLRDYE 706

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           NVP  E++ DYF+REVS HV +A+I        D +  ++GYEI+FN++FYQ++  R L 
Sbjct: 707 NVPLDETVYDYFLREVSTHVEEAWI--------DLDKTKIGYEISFNKYFYQHKALRPLD 758

Query: 652 DIDAELKGVEAQIATLLEEM 671
           +ID +++ +E +   L+ ++
Sbjct: 759 EIDKDIRELETKSEGLIMDI 778


>gi|259156577|gb|ACV96520.1| N-6 DNA methylase [Vibrio fluvialis Ind1]
          Length = 809

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/818 (28%), Positives = 373/818 (45%), Gaps = 176/818 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L  +TV D             M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F   RF + LSNPP+GK W  ++  + K+  +    RF                 P+
Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHI-KDGSDVIDPRFKVSLKDYWGNLEVVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I + Y++ E+ +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HITEITETYLACEDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531

Query: 496 ARLEADITWRK---------------------------------------------LSPL 510
           A L  D    +                                             L+  
Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDKKKSFLKSIEKDILSWCEDNDISLNAK 591

Query: 511 HQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
            ++  LD+   +  +                 +    SF  +  KS +A    +K S   
Sbjct: 592 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHA--IKLSAPE 649

Query: 557 IVAFINAFGRKDPRAD-----------------------PVTD---------------VN 578
             A +NA    D  A                         V D                 
Sbjct: 650 KNAILNAVSWYDETAKKVVKKVVKLSGEKLNDLLERYECEVADLPDFGYYPVPTTEGGKK 709

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I    +++L + E+VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI
Sbjct: 710 GEYITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--------KIGYEI 761

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +FN++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 762 SFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 799


>gi|313895998|ref|ZP_07829552.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975423|gb|EFR40884.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 662

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 339/701 (48%), Gaps = 80/701 (11%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +  ++ +FIW  A++ L   ++   +  VILP T++RRL+  LE T+ AV      F  
Sbjct: 4   QTHNAIVSFIWGIADECLRDIYQSGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFED 63

Query: 65  SNIDL--ESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118
           +++D+  E+    AG +FYN S + L  L       + + +  +Y+  FS N + I + F
Sbjct: 64  AHVDVPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQSLKADFVAYLNGFSPNVREILDKF 123

Query: 119 DFSSTIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSNIYEHL 162
            F + I  +EKAG+L  + + F  S I L P  +               +  M  I+E L
Sbjct: 124 KFDTQIDTMEKAGILGAVIEKFTASDINLSPYPIYKDAEKKEVLHPGLDNHSMGTIFEEL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F    ++ A +  TPRDVV L   L+  P   +  E      + YD   GTGG LT 
Sbjct: 184 IRKFNEANNQQAGEHWTPRDVVELMADLIFVP---IRHELLDATYSCYDGASGTGGMLTV 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   + +    H     +  +GQE+ PET+A+C A ML++   ++     + NI+ GSTL
Sbjct: 241 AQARLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKGDGAE-----AANIEYGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISD 333
           S+D      F + LSNPP+GK W+ D   +     + E  RF             P++SD
Sbjct: 296 SEDHHAKMHFDFMLSNPPYGKNWKADATKMGG-KSDIEDPRFRVTLADGERLDAFPRVSD 354

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++   K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+AL
Sbjct: 355 GQLLFLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIAL 414

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+WILSN+K + R+GK+QLI+AT +   +R N GKK      + R +I
Sbjct: 415 PENMFYNTGIGTYIWILSNKKEKRRKGKIQLIDATAIKAPLRKNLGKKNCEFTPELRAEI 474

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L ++++ E    S++   + FGY  + V RPLR+    +K   A L              
Sbjct: 475 LRVFLAYEESDVSKIFAGKEFGYWSVTVERPLRLRITREKELPAGL-------------- 520

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
                    +        +  +     +    A         + +         KDP A 
Sbjct: 521 ---------LRSAEERAAYQRALDTTPLDDWTAFAKATGLKPALLKKLRPHITVKDPAAQ 571

Query: 573 PVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630
           PV         D+ L + ENVP  Y   I  +   EV P+ PDAYID+        +   
Sbjct: 572 PVAGA-----ADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAYIDE--------KKTE 618

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +GYEI+F ++FY+    RK+ +I  +++ VE     LL  +
Sbjct: 619 IGYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLLNAV 659


>gi|259156157|gb|ACV96105.1| N-6 DNA methylase [Providencia alcalifaciens Ban1]
          Length = 809

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 237/818 (28%), Positives = 372/818 (45%), Gaps = 176/818 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L  +TV D             M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F   RF + LSNPP+GK W  ++  + K+  +    RF                 P+
Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHI-KDGSDVIDPRFKVSLKDYWGNLEVVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++ E+ +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HITEITDTYLACEDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531

Query: 496 ARLEADITWRK---------------------------------------------LSPL 510
           A L  D    +                                             L+  
Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSEKKKSFLKSVEKDILSWCEENDISLNAK 591

Query: 511 HQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
            ++  LD+   +  +                 +    SF  +  KS +A    +K S   
Sbjct: 592 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHA--IKLSAPE 649

Query: 557 IVAFINAFGRKDPRA------------DPVTD--------------------------VN 578
             A +NA    D  A            D +TD                            
Sbjct: 650 KNAILNAVSWYDETAKKVVKKVVKLSSDKLTDLLERYECEVADLPDFGYYPVPATEGGKK 709

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I     ++L + E+VP  +SI  YF+ EV PH+ +A+I+   +        ++GYEI
Sbjct: 710 GEYITYETSSDLRDTESVPLKQSIHQYFLDEVKPHIDEAWINLDTV--------KIGYEI 761

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +FN++FY ++P R L+++  ++  +E +   L+  +  
Sbjct: 762 SFNKYFYLHKPLRSLEEVATDIINLEQKAEGLISLILG 799


>gi|300825350|ref|ZP_07105429.1| N-6 DNA Methylase [Escherichia coli MS 119-7]
 gi|300522185|gb|EFK43254.1| N-6 DNA Methylase [Escherichia coli MS 119-7]
          Length = 819

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 236/818 (28%), Positives = 372/818 (45%), Gaps = 176/818 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 18  HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 77

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E
Sbjct: 78  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 137

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L  +T+ D             M  ++E LI
Sbjct: 138 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETIEDPDGNKMPALTNLGMGYVFEELI 197

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     KE   +  T+YDP CG+GG LT++
Sbjct: 198 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----VKEQLPLTMTVYDPACGSGGMLTES 253

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 254 QNFIEEKYPND--SRDIYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGSTLS 304

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F   RF + LSNPP+GK W  ++  + K+  +    RF                 P+
Sbjct: 305 TDEFAASRFDFMLSNPPYGKSWASEQKHI-KDGSDVIDPRFKVSLKDYWGNLEVVDATPR 363

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 364 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 423

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 424 AIVQLPNNLFYNTGITTYIWVLSNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 483

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++  + +             S++     FGY ++ + RP R      +  +
Sbjct: 484 HITEITDTYLACVDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAI 543

Query: 496 ARLEADITWRK---------------------------------------------LSPL 510
           A L  D    +                                             L+  
Sbjct: 544 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEDNDISLNAK 603

Query: 511 HQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
            ++  LD+   +  +                 +    SF  +  KS +A    +K S   
Sbjct: 604 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHA--IKLSAPE 661

Query: 557 IVAFINAFGRKDPRAD-----------------------PVTD---------------VN 578
             A ++A    D  A                         V D                 
Sbjct: 662 KNAILHAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPVPSAEGGKK 721

Query: 579 GEWI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE+I    +++L + E+VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI
Sbjct: 722 GEYITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--------KIGYEI 773

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +FN++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 774 SFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 811


>gi|238920395|ref|YP_002933910.1| hypothetical protein NT01EI_2505 [Edwardsiella ictaluri 93-146]
 gi|238869964|gb|ACR69675.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 802

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/809 (28%), Positives = 360/809 (44%), Gaps = 163/809 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
               +D E     +GY FYN S+++L +L +  T N      N+  Y+  FSDN   I  
Sbjct: 66  NAVELDEEPLKAASGYVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + I  +    +L  + + F    I L P+ + D             M  ++E LI
Sbjct: 126 CFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPNDIEDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDQLPLTMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A+      +   +  +G+E+  ET+A+C + M+IR        +   NI+ GSTLS
Sbjct: 242 QGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRG-------NDPANIKVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------------PGL 328
            D F+  RF + LSNPP+GK W  ++  + K+       RF                   
Sbjct: 295 TDEFSHMRFDFMLSNPPYGKSWASEQKHI-KDGNEVIDSRFKVKLADYWGVVAPKDCDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P     G R A V + S LF G AGSGES IRR+L+END+
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIENDM 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+L+N K   R+GKVQLI+A+ L+  +R N G+K   ++
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELS 473

Query: 446 DDQRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I    ++  N +             S++     FGY ++ V RP R        
Sbjct: 474 PEHIEEITQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSE 533

Query: 494 GLARLEADITWRKL---------SPLHQSFWL---------------------------- 516
            L  L  D +  ++           ++Q   L                            
Sbjct: 534 RLNALRFDKSLHEVMAHCFAEYGEQVYQEGGLTRHSKPILEWCEKNEISLNNKAKEKLQS 593

Query: 517 -----------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
                      D    +M++I    + +    ++      K  K+K S +   A  NA  
Sbjct: 594 STFWCAARTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKLSVTEKNALFNAVS 653

Query: 566 RKDPRAD--------------------------------------PVTDVNGE---WIPD 584
             D  A                                             GE   +   
Sbjct: 654 WYDETAAKVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESS 713

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E+VP  +SI  YF+ EV PHV +A+++         E  ++GYE++FN++FY++
Sbjct: 714 SDLRDSESVPLTQSIYQYFLDEVKPHVAEAWLNM--------ESVKIGYEVSFNKYFYRH 765

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  R L+ +  E+  +E Q   L+ ++  
Sbjct: 766 KSLRSLETVAQEILTLEQQADGLIAQILG 794


>gi|56750497|ref|YP_171198.1| type I restriction-modification [Synechococcus elongatus PCC 6301]
 gi|81299869|ref|YP_400077.1| type I restriction-modification [Synechococcus elongatus PCC 7942]
 gi|56685456|dbj|BAD78678.1| type I restriction-modification [Synechococcus elongatus PCC 6301]
 gi|81168750|gb|ABB57090.1| type I restriction-modification [Synechococcus elongatus PCC 7942]
          Length = 675

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/586 (40%), Positives = 334/586 (56%), Gaps = 34/586 (5%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             +L+ FIW  A+ L GD+K +D+GK+ILPFT+LRRL+C L PT++AV E+ +      +
Sbjct: 98  RQNLSAFIWSVADLLRGDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQGL 157

Query: 68  DLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
             E F+ K AG +F NTS   L  L   + N   NL +YI  F+   + IF+ F+F   I
Sbjct: 158 APEPFLLKKAGQNFCNTSPLDLKQLMGDADNIGENLRAYIQGFTPAVRDIFDSFEFHLQI 217

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RLEKAGLLY + + F+ I+LHPDTV +  M  ++E LIR+F    +E A +  TPR+V+
Sbjct: 218 DRLEKAGLLYLVTERFAQIDLHPDTVSNAEMGLVFEELIRKFAELSNETAGEHFTPREVI 277

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   LL   DDA   + PG++R+LYDPT GTGG L+ A  H+ +     +    LV  G
Sbjct: 278 RLMVNLLFIEDDAALTQ-PGIVRSLYDPTAGTGGMLSVAEEHLTELNPSAR----LVLSG 332

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL PE++A+C A MLI+           +NI  G+TLS D     ++ Y LSNPPFG +
Sbjct: 333 QELNPESYAICKADMLIKGQN-------IQNICFGNTLSDDKLPDAKYDYMLSNPPFGVE 385

Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  V++E +  G  GRFGPGLP++SDGS+LFL+HL +K+     GG R  IVL+ S
Sbjct: 386 WKKIQKEVQREAEQLGYSGRFGPGLPRVSDGSLLFLLHLISKMRPASEGGSRLGIVLNGS 445

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIRR++LENDL+EAI+ALPTD+F+ T I+TY+WILSNRK   R+GKVQ
Sbjct: 446 PLFTGGAGSGESEIRRYVLENDLVEAIIALPTDMFYNTGISTYIWILSNRKPASRKGKVQ 505

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYRR 477
           LI+A+  W  +R   G KR+ ++++Q  +I  ++ + E         S++     FGYR 
Sbjct: 506 LIDASGFWQKMRKSLGSKRKELSEEQIAEITRLFGNFEEADRDGKPVSKIFRNEEFGYRT 565

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAESFV 536
           I V RP R            + A     K  P+  +   D    P+ + +  Y   E   
Sbjct: 566 ITVERPQR------DEAGNVVLAQRGKTKGQPVADASLRDTENVPLTEDVDTYFQREVLP 619

Query: 537 KESIKSNEAKTLKVKASKSFIVAFI-----NAFGRKDPRADPVTDV 577
                  + +  KV     F   F       +    D     VTD 
Sbjct: 620 HVPDAWIDPEKTKVGYEIPFNRHFYVFTPPRSLEEIDAELQQVTDR 665



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 115/284 (40%), Gaps = 43/284 (15%)

Query: 406 YLWIL----SNRKTEERRGKVQLI--NATDLWTSIR---NEGKKRRIINDDQRRQIL--- 453
            L  L    S  +     G    I  N + L+T          +R ++ +D    I+   
Sbjct: 417 SLLFLLHLISKMRPASEGGSRLGIVLNGSPLFTGGAGSGESEIRRYVLENDLVEAIIALP 476

Query: 454 -DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
            D++ +     +  +L  R    R+ KV        ++D +G  +        K   L +
Sbjct: 477 TDMFYNTGISTYIWILSNRKPASRKGKVQ-------LIDASGFWQKMRKSLGSKRKELSE 529

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
               +I + +             V +  ++ E     +   +           ++D   +
Sbjct: 530 EQIAEITR-LFGNFEEADRDGKPVSKIFRNEEFGYRTITVERP----------QRDEAGN 578

Query: 573 PVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
            V        G+ + D +L + ENVP  E +  YF REV PHVPDA+ID         E 
Sbjct: 579 VVLAQRGKTKGQPVADASLRDTENVPLTEDVDTYFQREVLPHVPDAWIDP--------EK 630

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            +VGYEI FNR FY + P R L++IDAEL+ V  +I T+L  ++
Sbjct: 631 TKVGYEIPFNRHFYVFTPPRSLEEIDAELQQVTDRILTMLGGLS 674


>gi|15641772|ref|NP_231404.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585796|ref|ZP_01675590.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80]
 gi|121727690|ref|ZP_01680785.1| DNA methylase HsdM, putative [Vibrio cholerae V52]
 gi|147674983|ref|YP_001217310.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|153817851|ref|ZP_01970518.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457]
 gi|153821147|ref|ZP_01973814.1| DNA methylase HsdM, putative [Vibrio cholerae B33]
 gi|227081914|ref|YP_002810465.1| putative DNA methylase HsdM [Vibrio cholerae M66-2]
 gi|229508128|ref|ZP_04397633.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286]
 gi|229511633|ref|ZP_04401112.1| hypothetical protein VCE_003042 [Vibrio cholerae B33]
 gi|229518772|ref|ZP_04408215.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9]
 gi|229607689|ref|YP_002878337.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236]
 gi|255744816|ref|ZP_05418766.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholera CIRS 101]
 gi|262161901|ref|ZP_06030919.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae INDRE 91/1]
 gi|262169769|ref|ZP_06037460.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae RC27]
 gi|298498161|ref|ZP_07007968.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656291|gb|AAF94918.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549934|gb|EAX59952.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80]
 gi|121629987|gb|EAX62395.1| DNA methylase HsdM, putative [Vibrio cholerae V52]
 gi|126511671|gb|EAZ74265.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457]
 gi|126521343|gb|EAZ78566.1| DNA methylase HsdM, putative [Vibrio cholerae B33]
 gi|146316866|gb|ABQ21405.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|227009802|gb|ACP06014.1| putative DNA methylase HsdM [Vibrio cholerae M66-2]
 gi|227013669|gb|ACP09879.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|229343461|gb|EEO08436.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9]
 gi|229351598|gb|EEO16539.1| hypothetical protein VCE_003042 [Vibrio cholerae B33]
 gi|229355633|gb|EEO20554.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286]
 gi|229370344|gb|ACQ60767.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236]
 gi|255737287|gb|EET92682.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholera CIRS 101]
 gi|262022003|gb|EEY40713.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae RC27]
 gi|262028633|gb|EEY47288.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae INDRE 91/1]
 gi|297542494|gb|EFH78544.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 793

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/802 (28%), Positives = 370/802 (46%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
               +D       +GY FYNTS+++L TL ST T N      N E Y+  FS+N K I E
Sbjct: 66  NEIELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K++  +  T+YDP CG+GG LT+ 
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDNLPLSITVYDPACGSGGMLTET 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V +          +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFVEEKYPASN--RDIYLYGKEINDETYAICKSDMMIKG-------NNPENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F+  RF + LSNPP+GK W  ++  + KE K    GRF                +P+
Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P +   G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I+  Y+  ++ +             +++   + FGY ++ + RP R +       +
Sbjct: 472 HIAEIVSTYLENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRADLI 531

Query: 496 ARLEADITWRKLSP---------------------------------------------- 509
             L  + + R++                                                
Sbjct: 532 EPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTK 591

Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             + Q   +++   + ++I    + +    + +   E  +L +K S     A ++A    
Sbjct: 592 NWIKQRTLVNVASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWY 651

Query: 568 DPRADPVTDVNGEWIPD------------------------------------TNLTEYE 591
           D  A+ V     +   D                                    ++L + E
Sbjct: 652 DENAEKVIKKVAKLKQDKLDELLENYECELQDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+I+         E  ++GYEI+FN++FY+++P R + 
Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWINL--------ESVKIGYEISFNKYFYRHKPLRSMD 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E +   L+ ++  
Sbjct: 764 EVAGDIIALEQKAEGLIADILG 785


>gi|229520260|ref|ZP_04409686.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80]
 gi|167832524|gb|ACA01834.1| DNA methylase HsdM [Vibrio cholerae]
 gi|229342626|gb|EEO07618.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80]
          Length = 793

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/802 (28%), Positives = 370/802 (46%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
               +D       +GY FYNTS+++L TL ST T N      N E Y+  FS+N K I E
Sbjct: 66  NEIELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFNLKAQIRHMAGKNVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K++  +  T+YDP CG+GG LT+ 
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDNLPLSITVYDPACGSGGMLTET 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V +          +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFVEEKYPASN--RDIYLYGKEINDETYAICKSDMMIKG-------NNPENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F+  RF + LSNPP+GK W  ++  + KE K    GRF                +P+
Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P +   G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRYIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I+  Y+  ++ +             +++   + FGY ++ + RP R +       +
Sbjct: 472 HIAEIVSTYLENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRADLI 531

Query: 496 ARLEADITWRK------------------------------------LSPLHQSFWLDIL 519
             L  + + R+                                    L+   ++  LD  
Sbjct: 532 EPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTK 591

Query: 520 KPMMQ------------QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             M Q            +I    + +    + +   E  +L +K S     A ++A    
Sbjct: 592 NWMKQRTLVNAASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWY 651

Query: 568 DPRADPVTDVNGEWIPD------------------------------------TNLTEYE 591
           D  A+ V     +   D                                    ++L + E
Sbjct: 652 DENAEKVIKKVAKLKQDKLDDLLENYECELEDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+++         E  ++GYEI+FN++FY+++P R + 
Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRHKPLRSMD 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  E+  +E +   L+ ++  
Sbjct: 764 EVAKEIIALEQKAEGLIADILG 785


>gi|257095816|ref|YP_003169457.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048340|gb|ACV37528.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 769

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/767 (28%), Positives = 337/767 (43%), Gaps = 119/767 (15%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61
             +   + +FIW  A+D L   FK   +  VILP  ++RR++  LEPT+ +V +    L 
Sbjct: 3   QATHNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVIRRMDAVLEPTKQSVLDTRRMLD 62

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFED 117
             G      +    AG +FYNTS ++L  L S  ++     + E Y+  FS N + I ++
Sbjct: 63  AAGITEQRAALCDAAGQAFYNTSRFTLRDLKSRGSQQRLLADFEDYLNGFSANVQDILDN 122

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           F F + +  L +A  +  +   F    I+L P  + +  M  ++E L+R+F  E +E A 
Sbjct: 123 FKFRNQLQTLSRADAIGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEAG 182

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD V L   L+  P ++  +    +   LYD  CGTGG LT A   +    +   
Sbjct: 183 EHWTPRDAVRLMANLVFRPIESAIRSGTYL---LYDCACGTGGMLTVAEETLTAIAAGRG 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                + +GQE+ PET+AVC A ML++        D      + STL+ D F  + F + 
Sbjct: 240 QQVRCLLYGQEINPETYAVCKADMLLKG--EGESADHIVGGAEWSTLAHDAFPAREFDFM 297

Query: 296 LSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG-----LPKISDGSMLFLMHLANKLEL 348
           L+NPP+GK W+KD +A+  +   ++        G     + + SDG MLFL ++A+K+  
Sbjct: 298 LANPPYGKSWKKDLEAMGGKDGMRDPRFKVMHQGEELSLVTRSSDGQMLFLANMASKMNG 357

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T IATY+W
Sbjct: 358 QSALGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGIATYIW 417

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +LSNRK   R+G+VQLI+A+  +  +R N GKK   ++ +   +I   ++       S++
Sbjct: 418 VLSNRKPAHRQGRVQLIDASQWFKPLRKNLGKKNCELSPEDIERISRSFLDFAETPESKI 477

Query: 468 LD------------------------------------------YRTFGYRRIK------ 479
                                                       Y  FG           
Sbjct: 478 FPNAAFGYWKVTVERPLRLYSQLSLKAIETLRFNSGDEDLRATLYEEFGDDLFTRFSAVS 537

Query: 480 --VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP------------MMQQ 525
             + + L      D +     E   T + L    +   LD                +   
Sbjct: 538 AALEKRLADWGSSDDSEGEDDEGGGTKKGLPERQKKKLLDARTWERDGRLVDVATRLRVL 597

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT---------- 575
           +    + +            K   +K + + +   +     +D  A PV           
Sbjct: 598 LGEALFDDHNAFRDRVDTALKAAGIKLAAADLKQILKVVSWRDESAPPVIARVHKPGKLR 657

Query: 576 ---------------DVNGEWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPDAYIDK 618
                              E+ PD +L + E VP LE   I  +  REV P+ PDA+I  
Sbjct: 658 AEPLRGFYEATVDGRSSIVEYEPDADLRDTEQVPLLEDGGIAAFIRREVLPYTPDAWI-- 715

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
                  ++  ++GYEI+F R FY+ QP R L++I A++  +E +  
Sbjct: 716 ------KEDATKIGYEISFTRHFYKPQPLRTLEEISADILAIEKEAE 756


>gi|320529369|ref|ZP_08030457.1| N-6 DNA Methylase [Selenomonas artemidis F0399]
 gi|320138335|gb|EFW30229.1| N-6 DNA Methylase [Selenomonas artemidis F0399]
          Length = 662

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/700 (31%), Positives = 345/700 (49%), Gaps = 78/700 (11%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +  ++ +FIW  A++ L   ++   +  VILP T++RRL+  LE T+ AV      F  
Sbjct: 4   QTHNAIVSFIWGIADECLRDIYQRGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFED 63

Query: 65  SNIDL--ESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118
           +++D+  E+    AG +FYN S + L  L       N + +  +Y+  FS N + I + F
Sbjct: 64  AHVDVPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQNLKADFIAYLNGFSPNVQEILDKF 123

Query: 119 DFSSTIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSNIYEHL 162
            F + I  ++ AG+L  + + F  S I L P  +               +  M  I+E L
Sbjct: 124 KFRTQIDTMDDAGILGAVIEKFTASDINLSPYPIYKDAEKKDVLHPGLDNHSMGTIFEEL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F  + +E A +  TPRDVV L   L+  P   +  E      + YD   GTGG LT 
Sbjct: 184 IRKFNEDNNEEAGEHWTPRDVVELMADLIFVP---IRHELLDATYSCYDGASGTGGILTV 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   + +    H     +  +GQE+ PET+A+C A ML++   ++     + NI+ GSTL
Sbjct: 241 AQARLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKGDGAE-----AGNIKYGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGEL------GRFGPGLPKISDG 334
           S+D      F + LSNPP+GK W+ D   +  + + K+         G      P++SDG
Sbjct: 296 SEDHHAKMYFDFMLSNPPYGKNWKADATKMGGKSDIKDPRFRVTLADGERLAAFPRVSDG 355

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++   K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+ALP
Sbjct: 356 QLLFLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIALP 415

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSN+K + R+GK+QLI+AT + + +R N GKK      + R +IL
Sbjct: 416 ENMFYNTGIGTYIWILSNKKEKRRKGKIQLIDATAMKSPLRKNLGKKNCEFTPELRAEIL 475

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            I+++ E    S++ + + FG+  + V RPLR+    ++T  A L         +   ++
Sbjct: 476 RIFLAYEESDVSKIFEGKEFGFWSVTVERPLRLRIERERTLPAGLFG-------TAEERA 528

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
            +   L                    +    A         + +         KDP A P
Sbjct: 529 AYQRALDT----------------APLDDWTAFAKATGLKPALLKKLRPHITVKDPAAQP 572

Query: 574 VTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           V         D+ L + ENVP  Y   I  +   EV P+ PDAYID+        +   +
Sbjct: 573 VA-----GEADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAYIDE--------KKTEI 619

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI+F ++FY+    RK+ +I  +++ VE     LL  +
Sbjct: 620 GYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLLNAV 659


>gi|254228172|ref|ZP_04921601.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio sp. Ex25]
 gi|262394005|ref|YP_003285859.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. Ex25]
 gi|151939245|gb|EDN58074.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio sp. Ex25]
 gi|262337599|gb|ACY51394.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. Ex25]
          Length = 794

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/802 (27%), Positives = 371/802 (46%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D       +GY FYNTS+++L TL ST T N      N E Y+  FSDN K I E
Sbjct: 66  NETELDDAPLCAASGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSDNVKEIVE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  + I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPTVKEDPEGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT+ 
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDELPLSITVYDPACGSGGMLTET 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V +          +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFVEEKYPASN--RDIYLYGKEINDETYAICKSDMMIKG-------NNPQNIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F+ +RF + LSNPP+GK W  ++  + K+ K+   GRF                +P+
Sbjct: 293 TDEFSSERFDFMLSNPPYGKSWASEQKHI-KDGKDVVDGRFKVKLKDYWGVESEQDAIPR 351

Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P     G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQVSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPESRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I+  Y+  ++ +             +++   + FGY ++ + RP R +       +
Sbjct: 472 HIAKIVSTYLDNKSVERAIDEKGDSVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRSDLI 531

Query: 496 ARLEADITWRKLSP---------------------------------------------- 509
             L  + + R++                                                
Sbjct: 532 EPLRFEKSLREVMEYLYVEYGEKVYDAGFVKGVEKEITKWCEENDISLNKAAKTKLLDTK 591

Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             + Q   ++    +  +I    + +    + +   E K+L +K + +   A ++A    
Sbjct: 592 NWIKQRTLVNAASQLHSKIGDEVYNDFNQFKQLVDAELKSLGLKLAATEKKAILDAVSWY 651

Query: 568 DPRADPVTDVNGEWIPD------------------------------------TNLTEYE 591
           +  A+ V     +   D                                    ++L + E
Sbjct: 652 NENAEKVIKKVAKLKQDKLDELLESYECELQDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+++         E  ++GYEI+FN++FY+++P R + 
Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRHKPLRSMD 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E +   L+ ++  
Sbjct: 764 EVAKDIIALEQKAEGLISDILG 785


>gi|317132750|ref|YP_004092064.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470729|gb|ADU27333.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 668

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/702 (31%), Positives = 341/702 (48%), Gaps = 74/702 (10%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLA 61
                S+ +FIW  A+D L   +    +  VILP T++RRL+  LE T+ AV   +K L 
Sbjct: 3   NQEYNSIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTKKAVLTMKKQLE 62

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFED 117
               +    +    AG +F N S + L  L S   +     + ++Y+  FS N + I + 
Sbjct: 63  AAKIDNQWPALCNTAGQAFCNDSPFLLKDLTSRAKKQTLEADFKAYLDGFSPNVQEILDK 122

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSNIYEH 161
           F F   I  +  A +L  +   F  S I L PD V               +  M  I+E 
Sbjct: 123 FKFRDQIKTMVDADILGAVIDKFTSSDINLSPDPVYKDAEKKIVKLPGLDNHGMGTIFEE 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  E +E A +  TPRDVV L   L   P +   K++     + YD  CGTGG LT
Sbjct: 183 LIRRFNEENNEEAGEHWTPRDVVELMADLAFYPVEDQIKDATY---SCYDGACGTGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   +            +   GQE++PET+A+C A ML++        + +++I  GST
Sbjct: 240 VAQARLLTLAGRRGKNVSIHLFGQEVQPETYAICKADMLLKG-----DGEEAEHIFYGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISD 333
           LS D    ++F + LSNPP+GK W+ D D +  + E  +     + PG      +P+ SD
Sbjct: 295 LSLDGNPSRQFDFMLSNPPYGKSWKTDADKMGGKSEILDTRFNAYLPGGEELKMIPRTSD 354

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++  +K++     G R   V + S LF G AGSGES  RR+++E DL+EAI+AL
Sbjct: 355 GQLLFLLNNVSKMKTDTELGSRIIEVHNGSSLFTGDAGSGESNARRYMIERDLVEAIIAL 414

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+W+LSN+K E R+GK+QLI+AT++ +S+R N G K      + R++I
Sbjct: 415 PDNMFYNTGIGTYIWVLSNKKEERRKGKIQLIDATNMKSSLRKNMGNKNCEFTPEIRKEI 474

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           + I++  E    S + D   FGY  + V RPLR+    ++        + T++K S L  
Sbjct: 475 VRIFLDMEESDVSMIFDNSEFGYWNVTVERPLRLRVFPERE-----IPEDTFKKQSELDS 529

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
                   P+   +  +       K      +                       DP A 
Sbjct: 530 VREAVANAPVGTPLDDWDAFAKATKLKKTQLK--------------KIRPFITETDPHAK 575

Query: 573 PVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630
            V     E   D NL + EN+P  Y   I  +  +EV P+ PDAY+D+           +
Sbjct: 576 EV-----EGESDPNLRDSENIPFNYDGGIDAFIEKEVKPYAPDAYVDE--------SKTK 622

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +GYEI+F ++FY+    R ++DI A LK +E +   +++E+ 
Sbjct: 623 IGYEISFTKYFYKPVQLRDMKDILASLKELERESDGVMDEIV 664


>gi|282600127|ref|ZP_05973122.2| type I restriction-modification system, M subunit [Providencia
           rustigianii DSM 4541]
 gi|282566525|gb|EFB72060.1| type I restriction-modification system, M subunit [Providencia
           rustigianii DSM 4541]
          Length = 821

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/816 (28%), Positives = 368/816 (45%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 18  HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 77

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E
Sbjct: 78  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 137

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L  +T  D             M  ++E LI
Sbjct: 138 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETAEDPDGNKMPALTNLGMGYVFEELI 197

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 198 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTES 253

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 254 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGSTLS 304

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F   RF + LSNPP+GK W  ++  + K+  +    RF                 P+
Sbjct: 305 TDEFAASRFDFMLSNPPYGKSWASEQKYI-KDGSDVIDPRFKVSLKDYWGNFEVVDATPR 363

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 364 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 423

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 424 AIVQLPNNLFYNTGITTYIWVLNNNKPEVRKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 483

Query: 448 QRRQILDIYVSRENGK------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++ ++ +             S++     FGY ++ + RP R      +  +
Sbjct: 484 HITEITDTYLACKDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAI 543

Query: 496 ARLEADITWRK---------------------------------------------LSPL 510
           A L  D    +                                             L+  
Sbjct: 544 APLRFDRQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEENDISLNAK 603

Query: 511 HQSFWLDILKP------------MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            ++  LD+               +M  I    + +    ++      K   +K S     
Sbjct: 604 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKNHAIKLSAPEKN 663

Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580
           A +NA    D  A                         V D                 GE
Sbjct: 664 AILNAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPLPATEGGKKGE 723

Query: 581 WI---PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           +I    +++L + E+VP  +SI  YF  EV PHV +A+I+   +        ++GYEI+F
Sbjct: 724 YITYETNSDLRDTESVPLKQSIYQYFKGEVKPHVDEAWINLDTV--------KIGYEISF 775

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY ++P R L+++  ++  +E +   L+ ++  
Sbjct: 776 NKYFYMHKPLRSLEEVATDIINLEQKSEGLIAQILG 811


>gi|148827246|ref|YP_001291999.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittGG]
 gi|148718488|gb|ABQ99615.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittGG]
          Length = 790

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/807 (29%), Positives = 357/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNEETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGEQIYNAGFLAKTEPEISTWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +      Q   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGSTQFDDFNQFKQAVEGRLKAE-----KIPLSATEKKAI 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWIP---D 584
            NA    D  A  V                                     GE+I     
Sbjct: 649 FNAVSWYDENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYIQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +  R L+++  ++  +E Q   L+ E+
Sbjct: 761 KSLRSLEEVTQDILALEKQADGLISEI 787


>gi|120597917|ref|YP_962491.1| N-6 DNA methylase [Shewanella sp. W3-18-1]
 gi|120558010|gb|ABM23937.1| N-6 DNA methylase [Shewanella sp. W3-18-1]
          Length = 807

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/818 (28%), Positives = 368/818 (44%), Gaps = 176/818 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L  +TV D             M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTLS
Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F   RF + LSNPP+GK W  ++  + K+  +    RF                 P+
Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHI-KDGSDVIDPRFKVSLKDYWGNLEVVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K       
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPA 471

Query: 448 QRRQILDIY------------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y             +   G  S++     FGY ++ + RP R      +  +
Sbjct: 472 HITEITDTYLACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531

Query: 496 ARLEADITWRK---------------------------------------------LSPL 510
           A L  D    +                                             L+  
Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGTEKKKSFLKSIEKDILSWCEDNDISLNAK 591

Query: 511 HQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
            ++  LD+   +  +                 +    SF  +  KS +A    +K S   
Sbjct: 592 AKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKAHA--IKLSAPE 649

Query: 557 IVAFINAFGRKDPRAD-----------------------PVTD---------------VN 578
             A +NA    D  A                         V D                 
Sbjct: 650 KNAILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKK 709

Query: 579 GE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           GE   +  +++L + E+VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI
Sbjct: 710 GEFITYETNSDLRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTV--------KIGYEI 761

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +FN++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 762 SFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 799


>gi|260438581|ref|ZP_05792397.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809172|gb|EFF68377.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Butyrivibrio crossotus
           DSM 2876]
          Length = 702

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 343/702 (48%), Gaps = 57/702 (8%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++  NFIW  A  L G ++   +  VI+P  ++RR ECAL+ TR AV +K+      +  
Sbjct: 19  STEVNFIWSIANKLRGPYQSDKYKDVIIPMVIIRRFECALDDTREAVAKKFEEV--PSYP 76

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            ++  +++GY FYNTS  +L+ L   + +   N + YI SFS N + I  + DF   I +
Sbjct: 77  AKAMYRISGYQFYNTSRLTLAELVNDADHLAANFKFYIKSFSANIQDIIRNLDFDKQIDK 136

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++K   L  + K FS I+L+P+T+ +  M  I+E LIR+F       A D  T RD++  
Sbjct: 137 MDKHNRLLSVVKAFSEIDLNPNTIDNMKMGYIFEELIRKFSENA--EAGDHYTGRDIIKA 194

Query: 187 ATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
             ++LL +  D +F +    I T+ D   GTGG L+ A N++            +    Q
Sbjct: 195 MVSILLAEGCDDIFDDG--KIVTILDQAAGTGGMLSTANNYIKRFNPT----ADVRLFSQ 248

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ PE++A+C+A MLIR   +D       NI+   T+  D FT  +  + + NPPFG+ W
Sbjct: 249 EVNPESYAMCLAEMLIRGQNAD-------NIRLQDTMKADCFTDTKMRFVIENPPFGQPW 301

Query: 306 ------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
                 E D++AV+ E   G  GRF  G P   D  +LF+    NK++   +  GRAAI+
Sbjct: 302 GGKDAPEGDEEAVKAEVLKGTSGRFPAGAPSSGDMQLLFIQSAINKMD---DECGRAAII 358

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + SPLF+G   SGES+IRRWLLEND IEAI+ L TD+F+ T IATY+W+LS  K  ER+
Sbjct: 359 ENGSPLFSGGTSSGESQIRRWLLENDYIEAIIQLSTDMFYNTGIATYIWVLSKNKRAERK 418

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+A+    S+R   G KR+ I  + R +I  +Y   +  +  ++ D   F YR  
Sbjct: 419 GKIQLIDASSFSHSLRKTLGNKRKEITPEDRIEITKLYADFKENEHCQIYDNTEFIYREY 478

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP---------- 528
            V++PL+ S+ + +  +  + +      L    +   L+ +  +  +             
Sbjct: 479 AVMQPLQRSYAITEDRINAMLSSGALSTLYDEAKVDELENMDELTGKDKNKLDNFKKNKP 538

Query: 529 -----------------YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
                            Y   E F               K SK      I      D  A
Sbjct: 539 IYDAIVDALNNAVSDKVYKNPEIFTPVVNNILSGIISDAKDSKKIADKIIKGLSVMDKTA 598

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           D   D  G  I DT   + E VP+  +I DY   EV PHVPDA         K   + + 
Sbjct: 599 DIQKDKKGNVIYDTETKDTEIVPWETNIDDYMASEVLPHVPDAKAFFEEDLGKKNPVIKT 658

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           G EI F R+FY+YQ      ++      +EA + + ++++  
Sbjct: 659 GAEIPFTRYFYKYQAPASSDELAKRFNELEASVDSRIKKLFG 700


>gi|68535974|ref|YP_250679.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263573|emb|CAI37061.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 644

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 226/676 (33%), Positives = 344/676 (50%), Gaps = 46/676 (6%)

Query: 7   SAASL-ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           S A L  + +W  A+  L    +  D+G  ILP T+LRRLEC L PT+  V +   +   
Sbjct: 2   STAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILAPTKDEVLDLVWSLQE 61

Query: 65  SNIDLESFVKVA----GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDF 118
                E          G SFYN+S   L+ +     +    L  Y+ +FS + + +++ F
Sbjct: 62  EGFSDEMIDWEVQTRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVDAFSASVRDVWDAF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF+  +  L+ A  L+ + K+F+ I++  + +PD  M +++EH++ +      + A  F 
Sbjct: 122 DFAVKMKTLDSASRLWPVVKHFATIDMSMEALPDAQMGDLFEHVMYKAFDTKGKAAGAFY 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD + L   +L   DD       G  RT+YDPT GTGG L  A   + +     ++  
Sbjct: 182 TPRDAIRLMVDILFASDDVGLTAD-GASRTVYDPTAGTGGMLLVAARALKELNPDIEV-- 238

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             V  GQEL    +A+  A +LI+  E D        I+ G TL  DL+ G++F Y LSN
Sbjct: 239 --VLAGQELMSTGYAIGKADLLIQGGEPDA-------IRHGDTLLTDLYEGEQFEYILSN 289

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRA 356
           PPFG  WE  + +V KE       RF  GLP   DG MLFL H+A+KL    P   GGR 
Sbjct: 290 PPFGMDWEVQQKSV-KEQAKVPGSRFSHGLPGKDDGQMLFLAHVASKLMPAGPNGAGGRG 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V + SPLF G   SG  +IR WLLE+DL++AI+ LPT++F+ T I+TY+WIL   K E
Sbjct: 349 AVVSNGSPLFTGAPESGPDKIRAWLLESDLVDAIIQLPTNMFYGTGISTYVWILDTNKEE 408

Query: 417 ERRGKVQLINATDLW-TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+G VQLI+A++ W    +  G+KRR + +  R+++L+ Y   E+ + S++L     G+
Sbjct: 409 HRKGFVQLIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAGFEDTEISKVLTPADLGF 468

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           R +KV +  R+   +    ++R+   +  +   P H     D+       +         
Sbjct: 469 RDVKVTKQKRLRVGVTPEAVSRV---LEHKSAVPEHAEVLADVADVKFNDL--------- 516

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
             E++K+  AK   VK     I   + A G  D  A+P  D  G+ I D+  +  E +P 
Sbjct: 517 -PEALKA-AAKKRGVKMLAGMIDEVLEAVGVPDENAEPSVDRKGKPILDSAFSMTERIPL 574

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            E +  +  REV P  PD           D+E  +VGYEI F R FY+  P R L++IDA
Sbjct: 575 TEDVDAHMEREVLPFAPD--------VTWDEEAAKVGYEIPFKRVFYRPTPVRSLEEIDA 626

Query: 656 ELKGVEAQIATLLEEM 671
           ++  V  ++A    E+
Sbjct: 627 DVAAVMGRLAEKFAEV 642


>gi|319775045|ref|YP_004137533.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|329123047|ref|ZP_08251618.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|317449636|emb|CBY85842.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|327471978|gb|EGF17418.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 790

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/807 (29%), Positives = 357/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDTEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIASLRFDKALFEPMQYLYRQYGGQVYNAGFLTQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKTE-----KIPLSATEKKAI 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWI---PD 584
            NA    D  +  V                                     GE+I     
Sbjct: 649 FNAVSWYDENSAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYTTGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|225076788|ref|ZP_03719987.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens
           NRL30031/H210]
 gi|224951886|gb|EEG33095.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens
           NRL30031/H210]
          Length = 793

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/810 (28%), Positives = 359/810 (44%), Gaps = 168/810 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEVRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N + I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPDGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K       T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKNQIPAAITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         ++   +   G+E+  ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLPESQVERSIFLFGKEINDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG------PGLPKI---- 331
           L+ D F G+ F + LSNPP+GK W  D+  + K+ K     RF        G  +     
Sbjct: 295 LATDSFQGEHFDFMLSNPPYGKNWSNDQAYI-KDGKEVIDSRFKVSLPDYWGNEETLNAT 353

Query: 332 ---SDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              SDG +LFLM + +K++ P +   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PSASDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIIN 445
           +EAIV LP  LF+ T+I TY+W+LSN K E R+GKVQLI+A+ L+  +R + G+K     
Sbjct: 414 LEAIVQLPNKLFYNTDITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKKLGEKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFSAKARETDGQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAQ 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIASLRFDKALFEPMQYLYQQHGEQIYNAEYLAKTEPEISAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +      Q   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKAE-----KISLSATEKKAI 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GE---WIPD 584
            NA    +  A  V                                     GE   +   
Sbjct: 649 FNAVSWYNESAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYLQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           +P R L ++  ++  +E Q   L+ E+  E
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEILGE 790


>gi|144900419|emb|CAM77283.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 580

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/539 (41%), Positives = 329/539 (61%), Gaps = 29/539 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +++G++ILPFT+LRRL+C LEPT++AV  +        
Sbjct: 2   NQQSLSAFIWSVADLLRGDYKQSEYGRIILPFTVLRRLDCVLEPTKAAVLAELADKQAQG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E F+ + AG SF+NTS  ++  L     N R NL SY+ +FS   + +FE F+F S 
Sbjct: 62  LNPEPFLLRKAGQSFFNTSPLNMKKLMGDQDNIRENLHSYVNAFSPAVRDVFERFEFDSM 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL K+GLLY++ + F+ I+LHPD V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKSGLLYQVTEKFAQIDLHPDVVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +  + PG++RT+YDPT GTGG L+ A  ++A+     +    L   
Sbjct: 182 IRLMVNLLFIEDDEVLSK-PGVVRTIYDPTAGTGGMLSIAGEYLAEHNPQAR----LTVF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         +I  G+TLS D    K F Y LSNPPFG 
Sbjct: 237 GQELNAESYAICKADMLIKGQD-------VASIAFGNTLSDDGHPHKTFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  + KEH++ G  GRFGPGLP++SDGSMLFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKEIRKEHESQGFNGRFGPGLPRVSDGSMLFLLHLISKMRPIADGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WI+SNRK   R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIIGLPTDMFYNTGISTYVWIVSNRKPAHRKGKV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSR----ENGK-FSRMLDYRTFGYR 476
           QLI+A+ +W  +R   G KR+ +++    ++  ++       ++GK  SR+ D   FGYR
Sbjct: 410 QLIDASGMWQKMRKSLGSKRKELSESHIDEVTRLFGQFLESEQDGKPISRIFDNTAFGYR 469

Query: 477 RIKVLRPLRMS-------FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            I V RP R             + G  + +A +   +  PL +       + ++     
Sbjct: 470 TITVERPERDDAGKIVVGVKGKQKGKPQADAKLRDTENVPLSEDVEAYFKREVLPHAAD 528



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 30/237 (12%)

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              + +       D++ +     +  ++  R   +R+ KV        ++D +G+ +   
Sbjct: 370 ENDLLEAIIGLPTDMFYNTGISTYVWIVSNRKPAHRKGKVQ-------LIDASGMWQKMR 422

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                K   L +S   ++ + +  Q          +     +       +   +      
Sbjct: 423 KSLGSKRKELSESHIDEVTR-LFGQFLESEQDGKPISRIFDNTAFGYRTITVERPE---- 477

Query: 561 INAFGRKDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI 616
                 +D     V        G+   D  L + ENVP  E ++ YF REV PH  DA+I
Sbjct: 478 ------RDDAGKIVVGVKGKQKGKPQADAKLRDTENVPLSEDVEAYFKREVLPHAADAWI 531

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           D         E  ++GYEI FNR FY +QP R L +IDAEL+GV  +I T+L E+  
Sbjct: 532 DH--------EKTKIGYEIPFNRHFYVFQPPRPLAEIDAELRGVVGKIQTMLAEVMG 580


>gi|145629011|ref|ZP_01784810.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145639606|ref|ZP_01795210.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|144978514|gb|EDJ88237.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145271397|gb|EDK11310.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|162949228|gb|ABY21301.1| probable type I secretion system methylase [Haemophilus influenzae]
 gi|309750478|gb|ADO80462.1| Probable type I restriction modification system, methylase
           component HsdM2 [Haemophilus influenzae R2866]
          Length = 790

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/807 (29%), Positives = 358/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVKLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S+M D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQMFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +  L  D                                                    
Sbjct: 534 NIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ + +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASKLLKHFGEQQFHDFNQFKQAVECRLKAE-----KIPLSATEKKAV 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWI---PD 584
            NA    +  A  V                                     GE+I     
Sbjct: 649 FNAVSWYNENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|229847072|ref|ZP_04467178.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 7P49H1]
 gi|229810156|gb|EEP45876.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 7P49H1]
          Length = 790

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/807 (29%), Positives = 357/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNEETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTALKLLEHFGEQQFDDFNQFKQAVECRLKAE-----KIPLSATEKKAV 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWI---PD 584
            NA    D  +  V                                     GE+I     
Sbjct: 649 FNAVSWYDENSAKVIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|154508214|ref|ZP_02043856.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797848|gb|EDN80268.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC
           17982]
          Length = 708

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/699 (31%), Positives = 337/699 (48%), Gaps = 57/699 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S A+  +FIW  A  L   +    +  VI+P T++RR ECAL PT+  V  ++      +
Sbjct: 22  SVANEVSFIWSIANKLRPTYSSDKYKDVIIPMTIIRRFECALAPTKDKVVAQHEKI--PS 79

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDF 120
              ++  ++AG+SFYNTS ++L  L     N   N ++YI  FS N   +     +  DF
Sbjct: 80  YPYKAMCQIAGFSFYNTSRFTLERLLDDPDNIAANFKAYIEGFSPNVNDLLMSVEKGLDF 139

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  I +++K   LY + K FS ++L P T+    M  I+E LIR+F       A +  T 
Sbjct: 140 AKQIDKMDKGNRLYGVVKAFSELDLDPRTIDSIKMGYIFEELIRKFSENA--EAGEHYTG 197

Query: 181 RDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           RD++ L  ++LL +  D +F +   +  T+ D  CGTGG L+ A N++            
Sbjct: 198 RDIIKLMVSILLAEGCDDIFDDGKVI--TILDQACGTGGMLSTAFNYIHRFNPT----AD 251

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQE  PE++A+C+A MLI+  ++D       NI+   T+  D FT  +  + + NP
Sbjct: 252 IRLFGQENNPESYAMCLAEMLIKDQDAD-------NIRFQDTMLADCFTDIKMRFVIENP 304

Query: 300 PFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PFG+ W      +  ++AV  EH+ G  GR+G G P   D  MLFL    +K++      
Sbjct: 305 PFGQAWGGKDAADGVENAVIAEHEKGFSGRWGAGTPGAGDMQMLFLQSAVDKMDPER--- 361

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAAI+ + SPL+ G  GSGES+IRRWLLE DLIEAI+ALP DLF+ T IATY+WILS  
Sbjct: 362 GRAAIIENGSPLYTGEVGSGESQIRRWLLEQDLIEAIIALPVDLFYNTGIATYIWILSKN 421

Query: 414 KTEERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  ER+GKVQLI+A+ ++    +  GKK+  I  D R  I  +Y         ++     
Sbjct: 422 KRAERKGKVQLIDASQIFHKLRKGLGKKKNEITPDDREHITRLYADFAENDLCQIYPNEE 481

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM----MQQIYP 528
           F YR   V++PL+ S+ + +  +  L        L    +   L+  + +     +++  
Sbjct: 482 FIYREYTVMQPLQRSYGITEERIENLINGGYLNSLFNPTKVAKLEQKEELTAKEERELAK 541

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKS-------------------FIVAFINAFGRKDP 569
           +   E      I +  A                              +    +     D 
Sbjct: 542 HRQGEPLYTAIIDTLRAAITDQVWLAPKPFTAHLKSLVRQTVVDSKLLAKIADGLSLMDK 601

Query: 570 RADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
            A+   D  G  I DT   + E VP  E I +Y  REV P++PDA         K K + 
Sbjct: 602 SAEIQRDRKGNTIYDTATKDVERVPAEEDITEYMQREVLPYIPDAKAFFEEDLSKKKPVV 661

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           + G EI F R+FY Y+     +    E   +E +I+  +
Sbjct: 662 KTGAEIPFTRYFYSYETPVTAEIYAQEFMRLEQEISASI 700


>gi|68248716|ref|YP_247828.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|68056915|gb|AAX87168.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
          Length = 790

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/807 (28%), Positives = 356/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++ P +   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            ++ L  D                                                    
Sbjct: 534 NISPLRFDKALFEPMQYLYRQYGEQIYNAGFLAQTEQEITAWCEAQGIALNNKNKTKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASTLLEHFGEQQFDDFNQFKQAVECRLKAE-----KIPLSATEKKAV 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWI---PD 584
            NA    D  +  V                                     GE+I     
Sbjct: 649 FNAVSWYDENSAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|283796107|ref|ZP_06345260.1| type I restriction-modification system methyltransferase subunit
           [Clostridium sp. M62/1]
 gi|291076321|gb|EFE13685.1| type I restriction-modification system methyltransferase subunit
           [Clostridium sp. M62/1]
          Length = 712

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 346/707 (48%), Gaps = 53/707 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + +   +     +W  A  L G +    +  VI+P  ++RR ECALE T+ AV  KY   
Sbjct: 13  DTSIDVSKEVGLVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEETKDAVVAKYKQ- 71

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-D 119
              N+      +V+ Y FYNT+E++L  L   S +  +NL+SYI  FS N + I E    
Sbjct: 72  -NPNLPAALLCQVSKYPFYNTNEFTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLK 130

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS+ I +++K+  LY + K FS ++L+P  V    M  I+E +IRRF       A D  T
Sbjct: 131 FSTQIDKMDKSNRLYSVVKKFSDLDLYPAHVDSMKMGYIFEDIIRRFSENA--EAGDHYT 188

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +LL           G I T+ D  CG+GG L+   + +     +      
Sbjct: 189 PREVIRLMVNVLLAEGCNDLLTDEGKIATVLDAACGSGGMLSTTYDFLRRKNPY----VD 244

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQE+ PE++A+C+A MLI+  +           ++ +TL  D F  ++    + NP
Sbjct: 245 VRLFGQEINPESYAICLADMLIKGQD----VKNIMGDEEANTLKTDCFPDQKMRLVIMNP 300

Query: 300 PFGKKWEKDKDAVEKEHK----NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PFG  W        +E K    N + GRF  GLP   D  +LF+ H  NKL+      GR
Sbjct: 301 PFGTPWGGKDAPEGQEKKVREENKKGGRFEHGLPGTGDAQLLFMQHAINKLD---EKNGR 357

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AAI+ + SPLF+G   SGES+IRRW+LE DLIEAI+ALPT LF+ T+I  Y++ILS  K 
Sbjct: 358 AAIITNGSPLFSGGTTSGESQIRRWMLEEDLIEAIIALPTQLFYNTDIGIYIFILSRNKR 417

Query: 416 EERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            +RRGKVQLINA D+W  +R   GKKRR I+ D  ++I ++Y + E  ++ ++     F 
Sbjct: 418 PDRRGKVQLINAVDMWKPLRKSLGKKRREIDRDSMKKITELYSNFEENQYCKIFPNEEFM 477

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-------MQQIY 527
           Y+   V +PL+   +LD   + RL     +   S +      + LK M        ++  
Sbjct: 478 YKEYAVYQPLQRRGVLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQ 537

Query: 528 PYGWAESFVKESIKSNEA-----------------KTLKVKA---SKSFIVAFINAFGRK 567
            Y   + FV + +   EA                 K+L  K    S S +          
Sbjct: 538 KYLAGQQFVADVLNILEANRSDQVFMDYGEFEKYLKSLLGKVEGMSASRLTGIAMVLAVM 597

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D  A    D  GE I DT   + E +   +  + YF  EV PHVPDA     F  EK + 
Sbjct: 598 DKTAVVQKDRKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWAYEFDPEKKES 657

Query: 628 IG---RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                ++G E  F RFFY+Y+   K  ++ A+   +E  ++  +  +
Sbjct: 658 ATNKEKLGAEFPFTRFFYEYKEPEKADNLLAQFMELEKSLSEKIAAL 704


>gi|148825621|ref|YP_001290374.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittEE]
 gi|148715781|gb|ABQ97991.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittEE]
 gi|309972765|gb|ADO95966.1| Probable type I restriction modification system, methylase
           component HsdM2 [Haemophilus influenzae R2846]
          Length = 790

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 238/807 (29%), Positives = 357/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ GY FYNTS+++L +L  T          N E Y+  FS N + I +
Sbjct: 66  AFTELDDLPLKKITGYVFYNTSKWTLKSLYQTAGNTPQHMLANFEEYLDGFSTNVQEIIK 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F  S  I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEDNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGEQVYNAEYLAKTEPEISTWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +      Q   +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAATLFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKTE-----KIPLSATEKKAI 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWIP---D 584
            NA    +  A  V                                     GE+I     
Sbjct: 649 FNAVSWYNENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYIQYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNILDYFKAEVQPHISEAWLNM--------ENVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|114047282|ref|YP_737832.1| N-6 DNA methylase [Shewanella sp. MR-7]
 gi|113888724|gb|ABI42775.1| N-6 DNA methylase [Shewanella sp. MR-7]
          Length = 829

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/829 (28%), Positives = 366/829 (44%), Gaps = 183/829 (22%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +GY FYNTS+++L +L +T T N      N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L  +TV D             M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----VKDQLPLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            N + +   +    K    +  +G+E+  ET+A+C + M+I+        +  +NI+ GS
Sbjct: 242 QNFIEEKYPNDPSVKTKRDVYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PG 327
           TLS D F   RF + LSNPP+GK W  ++  + K+  +    RF                
Sbjct: 295 TLSTDEFAASRFDFMLSNPPYGKSWASEQKHI-KDGSDVIDPRFKVSLKDYWGNLEVVDA 353

Query: 328 LPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
           +++AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEF 473

Query: 445 NDDQRRQILDIYVSRENGK-----------------FSRMLDYRTFGYRRIKVLRPLRMS 487
             +   +I D Y++  + +                  S++     FGY ++ + RP R  
Sbjct: 474 APEHITEITDTYLACVDVERALDATAPEGMGDPVGIASKVFSNEDFGYYKVTIERPDRRR 533

Query: 488 FILDKTGLARLEADITWRK----------------------------------------- 506
               +  +A L  D    +                                         
Sbjct: 534 AKFTQEAIAPLRFDKQLSEVMEYVYAEHGERVYEKTAPSNNKEGDEKKRSFLKSIEKDIL 593

Query: 507 ---------LSPLHQSFWLDILKPM------------MQQIYPYGWAESFVKESIKSNEA 545
                    L+   ++  LD+   +            M  I    + +    ++      
Sbjct: 594 SWCEENDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSL 653

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD--------------------- 584
           KT  +K S     A +N     D  A  V     +   D                     
Sbjct: 654 KTHAIKLSAPEKNAILNVVSWYDESAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGY 713

Query: 585 --------------------TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK 624
                               ++L + E+VP  +SI  YF+ EV PHV +A+I+   +   
Sbjct: 714 YPVPTTEGGKKNEFITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--- 770

Query: 625 DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                ++GYEI+FN++FY+++P R L D+  ++  +E +   L+ ++  
Sbjct: 771 -----KIGYEISFNKYFYRHKPLRSLIDVATDIINLEQKAEGLIAQILG 814


>gi|309776567|ref|ZP_07671547.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915668|gb|EFP61428.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 669

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 341/707 (48%), Gaps = 75/707 (10%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--E 57
           M     +   + NFIW  A+D L   +    +  VILP T++RRL+  LE T   VR  +
Sbjct: 1   MNMDNQTHTQIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTVDKVRSTK 60

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKA 113
           K L     +    +    AG SF N S + L  L S   +     + E+Y+  FS NA+ 
Sbjct: 61  KMLDENKIDNQWPALCNAAGQSFCNASPFLLKDLTSRANKQKLKTDFETYLDGFSPNAQE 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV--------------PDRVMSN 157
           I E F F + IA +  A +L  + + F  S I L P  +               +  M  
Sbjct: 121 ILEKFKFRNQIATMIDADILGSVIEKFVSSDINLSPYEIYKDDEKTILKHPGLDNHGMGT 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E LIR+F  E +E A +  TPRDVV L   L+  P +   K++     T YD  CGTG
Sbjct: 181 IFEELIRKFNEENNEEAGEHWTPRDVVELMADLIFMPIEDQIKDATY---TCYDGACGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G LT A + +    S       +   GQE++PET+A+C A ML++        + +++I 
Sbjct: 238 GMLTVAQDRLQTLASRRGKNVSIHLFGQEVQPETYAICKADMLLKG-----DGEQAEHIA 292

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRF------GPGLP 329
            GSTLS D    ++F + L+NPP+GK W+ D + +  +KE  +     +         +P
Sbjct: 293 YGSTLSADGNATRQFDFMLANPPYGKSWKVDAEKMGGKKEILDTRFNTYLEDGTEMKMIP 352

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + SDG +LFL++   K++     G R A V + S +F G AGSGES  RR+++ENDL+EA
Sbjct: 353 RTSDGQLLFLLNNVAKMKKDSPLGSRIAEVHNGSSIFTGDAGSGESNARRYMIENDLVEA 412

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-KKRRIINDDQ 448
           I+ALP ++F+ T I T++W+LSN+K E R+GK+QLI+AT + + +R +  KK      D 
Sbjct: 413 IIALPENMFYNTGIGTFIWVLSNKKEERRKGKIQLIDATAMKSPLRKKMGKKNCEFTSDI 472

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           R++I+ I++  E  + S++ D   F Y  + V RPLR+    D     R+    T++K  
Sbjct: 473 RKEIMRIFLEMEESEVSKIFDNNDFAYWNVTVERPLRLRVFAD-----RVIPADTFKKAD 527

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                            +  +                     K  K+ +         KD
Sbjct: 528 EYETVTTAIAKAAATAPLDDWSAFAKAT--------------KLKKAQLNKIRPFITEKD 573

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
             A  +        PD++L + EN+P  Y   I+ +   EV  + PDAYID+        
Sbjct: 574 VTAVAID------EPDSDLRDTENIPFTYEGGIETFMQNEVLTYAPDAYIDE-------- 619

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  ++GYEI+F ++FY+    R++ DI   L  +E +   ++  +  
Sbjct: 620 KKTQIGYEISFTKYFYKPAELREMADIIENLNSLEKEADGMMANIMG 666


>gi|54308076|ref|YP_129096.1| putative DNA methylase HsdM [Photobacterium profundum SS9]
 gi|46912502|emb|CAG19294.1| putative DNA methylase HsdM [Photobacterium profundum SS9]
          Length = 793

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 235/801 (29%), Positives = 368/801 (45%), Gaps = 161/801 (20%)

Query: 14  FIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----AFGGSNID 68
           F W  A+D L   +    +  VILP  +LRRL+  LE T+  + E+          +  D
Sbjct: 2   FSWSIADDCLRDVYVRGKYRDVILPMVVLRRLDSLLEATKKEILEEVAFQRDEMESTEFD 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFEDFDFSS 122
                 + GY FYNTS+++L  + +T + N      N+E Y+  FSDN K I + F   S
Sbjct: 62  SAPLEAITGYVFYNTSKWTLKQITATASNNQQILLANVEEYLNGFSDNVKEIIKCFKLQS 121

Query: 123 TIARLEKAGLLYKICKNFS--GIELHPDTVPDRV-----------MSNIYEHLIRRFGSE 169
            I  + +  +L  + + F+   I L P+ V D             M  ++E LIR+F  +
Sbjct: 122 QIRHMAEKDILLDVLEKFTSPNINLTPNVVEDPDGNKLPALSNLGMGYVFEELIRKFNED 181

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPR+V+ L T L+ DP     K +   + TLYDP CG+GG LT+A N + D
Sbjct: 182 NNEEAGEHFTPREVIELMTHLVFDP----LKGNLPPVITLYDPACGSGGMLTEAQNFIKD 237

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K    +   G+E+  ET+A+C + M+I+        D  +NI+ GSTLS D F G
Sbjct: 238 PEGKIKATSDVYLFGKEINDETYAICKSDMMIKG-------DNPENIRVGSTLSTDEFAG 290

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSM 336
           K FHYCLSNPP+GK W  ++  + K+ K     RF                +P+ SDG +
Sbjct: 291 KTFHYCLSNPPYGKSWASEQKYI-KDGKEVIDSRFKVKLKDYWGVEDTYEAIPRSSDGQL 349

Query: 337 LFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           LFLM + +K++   NG  G R A V + S LF G AG GES IRR+++END++EAIV LP
Sbjct: 350 LFLMEMVSKMKSVNNGVEGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDMLEAIVQLP 409

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            +LF+ T I TY+W+LSN K ++R+G+VQLI+A  L+  +R N G K    + +  R+I 
Sbjct: 410 NNLFYNTGITTYIWLLSNNKLDKRKGQVQLIDANPLYRKLRKNLGDKNCEFSPEHIREIT 469

Query: 454 DIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             Y+                G  +++ D   FGY ++ +  P R +       +  L  D
Sbjct: 470 KTYLDMTKVERTLDEKGDPQGISTKVFDNDDFGYYKVNIECPDRRNAQFSSERIETLRFD 529

Query: 502 ITWRK------------------LSPLHQSF----------------------------- 514
              R+                  L+   ++                              
Sbjct: 530 KALREPMEYIYNTYGEDAYKAEILAKESKAILAWCEEKEISLNTKNRNKLLDVATWTRLG 589

Query: 515 -WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
             +DI   +M+ I    + +    ++    E K+ K+K S     A +NA       A+ 
Sbjct: 590 DLIDIANTLMKAIGTDIYNDYNQFKATVDAELKSRKIKLSAPEKNAILNAVSWYHENAEK 649

Query: 574 VTDVN--------------------------------------GEWIP---DTNLTEYEN 592
           V                                          GE+I    +++L + E+
Sbjct: 650 VIKKKLKLTGSKLDELLTSCDCDEHELGDFGYYLIAKEDGGKAGEYITYESNSDLRDAES 709

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           +P  +SI  YF+ EV PHV D++I+         +  ++GYEI+FN+ FYQ++P R + D
Sbjct: 710 IPLKQSIYQYFLDEVKPHVSDSWINI--------DSTKIGYEISFNKHFYQHKPLRSIDD 761

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           +  ++  +E +   L+ E+  
Sbjct: 762 VAKDIIALEQKAEGLMAEILG 782


>gi|319896546|ref|YP_004134739.1| type i restriction-modification system, methyltransferase subunit
           [Haemophilus influenzae F3031]
 gi|317432048|emb|CBY80397.1| putative type I restriction-modification system,methyltransferase
           subunit [Haemophilus influenzae F3031]
          Length = 790

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/807 (29%), Positives = 358/807 (44%), Gaps = 168/807 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473

Query: 446 DDQRRQILDIY-----VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y      +RE           S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVE 533

Query: 494 GLARLEAD---------------------------------------------------- 501
            +A L  D                                                    
Sbjct: 534 NIASLRFDKALFEPMQYLYRQYGGQVYNARFLAKTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 502 -ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW K + L Q+    +     QQ + +   +  V+  +K+      K+  S +   A 
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFHDFNQFKQAVEGRLKTE-----KIPLSATEKKAV 648

Query: 561 INAFGRKDPRADPVTDVN---------------------------------GEWI---PD 584
            NA    D  +  V                                     GE+I     
Sbjct: 649 FNAVSWYDENSAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETS 708

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY++
Sbjct: 709 SDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKYFYRH 760

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
           +P R L ++  ++  +E Q   L+ E+
Sbjct: 761 KPLRSLAEVAQDILALEKQADGLISEI 787


>gi|158337899|ref|YP_001519075.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
 gi|158308140|gb|ABW29757.1| type I restriction-modification system, M subunit, putative
           [Acaryochloris marina MBIC11017]
          Length = 807

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 237/818 (28%), Positives = 368/818 (44%), Gaps = 171/818 (20%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----L 60
            S   L +FIW  A+D L   +    +  VILP  +LRRL+C LE T+ AV E+      
Sbjct: 4   ASQNKLISFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLEETKDAVMEEVRFQRE 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAI 114
           + G + ++  +    +GY FYNTS+++L  L  T + N      N ++Y+  FS+N K I
Sbjct: 64  SVGLTELESGALKDASGYVFYNTSDWTLKRLVETASNNRQILEANFKAYLDGFSENVKEI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEH 161
            + F     I R+ +A +L  + + F+   I   P    D             M  ++E 
Sbjct: 124 IDSFYLRDQIKRMVQADVLLDVLEKFTSPYINFSPTQGEDPDGRKLAGLSNLGMGYVFEE 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIR+F  E +E A +  TPR+V+ L T LL  P     KE    +  +YD  CG+GG LT
Sbjct: 184 LIRKFNEENNEEAGEHFTPREVIKLMTHLLFMP----VKEQLPPVMLIYDGACGSGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++ N ++D     K    +  +G+E+ PET+ +C + M+I+        +  +NI+ GST
Sbjct: 240 ESQNFISDPEGGIKSDAQVYLYGKEVNPETYGICKSDMMIKG-------NSPENIKLGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GPGL 328
           L+ D F G RF + L NPP+GK +  D+  +  + K+    RF                 
Sbjct: 293 LAMDEFAGMRFDFMLENPPYGKSYAADQKHIL-DGKDVLDERFLLPLKDFWDEESLEKAT 351

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+++END 
Sbjct: 352 PRSSDGQLLFLMDMVSKMKPLDQSPAGSRIASVHNGSSLFTGDAGSGESNIRRYIIENDW 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP ++F+ T I+TY+W+LSN K  ER+GKVQLI+ ++L+  +R N G K     
Sbjct: 412 LEAIVQLPQNMFYNTGISTYVWVLSNNKAPERQGKVQLIDRSELYRKLRKNLGAKNCEFA 471

Query: 446 DDQRRQILDIYVSR---------ENGK-----FSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +Q  +I  +Y+ R         E+ +      S++ D + FG+ ++ V RPLR+     
Sbjct: 472 PEQIEKITHLYLDRVHQPTLPPSEDRELPPPPISKVFDNQDFGFYKVTVERPLRLLAQFT 531

Query: 492 KTGLA---------------------------------------------------RLEA 500
              +A                                                    L  
Sbjct: 532 PERVATLRYVPVLAEVMEWAYGEWGDEIYTSLTDHKQKIEEYLEKEEISLTAKNRKALFT 591

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             TW     L Q     +     +  + +      V +++K+  A+ L  K S S     
Sbjct: 592 AKTWENQRDLMQVAEQLMASVEQEVWHDFNDFAERVNDTLKTL-ARQLDSKLSASEKRQI 650

Query: 561 INAFGRKDPRADPVTDV----NG--------------------------------EWIPD 584
            NA   +D  A  V        G                                E+  D
Sbjct: 651 FNAVSWRDEAAARVIKKVHKLKGEKLAELLEHLGTTEEHLADFGYWPGETAGQWIEYETD 710

Query: 585 TNLTEYENVPYLES---------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           + L + E+VP             I  YF+ EV PHV DA+I          +  ++GYEI
Sbjct: 711 SELRDTESVPLNYGQALERGTAQIHGYFLAEVRPHVEDAWIAL--------DSTKIGYEI 762

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           NFN++FYQ++P RKL+ +  E+  +E +   LL+ + +
Sbjct: 763 NFNKYFYQHKPLRKLETVVEEILELEKKTEGLLKRLVS 800


>gi|304310801|ref|YP_003810399.1| Type I restriction-modification system DNA methylase [gamma
           proteobacterium HdN1]
 gi|301796534|emb|CBL44743.1| Type I restriction-modification system DNA methylase [gamma
           proteobacterium HdN1]
          Length = 808

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/815 (28%), Positives = 365/815 (44%), Gaps = 169/815 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRYQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E   + +GY FYN S+++L++L +T T N      N + Y+  FS N + I E
Sbjct: 66  QATELDEEPLKEASGYVFYNVSKWTLTSLHNTATNNRQILLANFDEYLNGFSANVQEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 RFELKSKIQHMANKDVLLDVVEKFISPKINLTPVAAEDPDGYKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+S  +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDSIPLTLTVYDPACGSGGMLTES 241

Query: 224 MNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            N + +        K    +  +G+E+  ET+A+C + M+I+        +  +NI+ GS
Sbjct: 242 QNFIEEKYPADPSAKSQRDIYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PG 327
           TLS D F   RF + LSNPP+GK W  ++  + K+  +    RF                
Sbjct: 295 TLSTDEFASLRFDFMLSNPPYGKSWASEQKYI-KDGSDVIDPRFKVKLKDYWGNIEECDA 353

Query: 328 LPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVSKMKDPGAGTNGSRIASVHNGSSLFTGDAGGGESNIRRYIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
           +++AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKPESRKGKVQLIDASLLYRKLRKNLGNKNCEF 473

Query: 445 NDDQRRQILDIY-----VSRE------------NGKFSRMLDYRTFGYRRIKVLRPLRMS 487
             +   QI   Y     + RE             G  S++     FGY ++ + RP R  
Sbjct: 474 APEHIEQITRAYLDCAAIERELDGSLPEGMGDPIGIASQVFRNEDFGYYKVTIERPDRRK 533

Query: 488 FILDKTGLARLEADITWRK------------------------------------LSPLH 511
                  +A L  D    +                                    L+   
Sbjct: 534 AQFTAERIAGLRFDKQLSEVMEHLYAEYGDKLYEKGFLKSIEKNILAWCEDNDISLNAKA 593

Query: 512 QSFWLDILKP------------MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
           ++  LD+               +M  I    + +  + +       K LKVK S +   A
Sbjct: 594 KTKLLDVKHWLALKAVYETAQALMAAIGKDEFDDFNLFKDQVDAGLKALKVKLSATEKNA 653

Query: 560 FINAFGRKDPRADPVTDVNGE------------------------------------WIP 583
            +NA    D  A  V     +                                    +  
Sbjct: 654 ILNAVSWYDESAAKVIKKVVKLSGDKLDEVLERYGCTQAQLPDFGFYPTNKKNEYITYET 713

Query: 584 DTNLTEYENVPYLES-----IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
             +L + E+V  L+      I  YF+ EV PHV +++I+   +        ++GYEI+FN
Sbjct: 714 SADLRDSESVSLLKDDEPQSIHQYFLDEVKPHVEESWINLDSV--------KIGYEISFN 765

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ++FY+++P R L+D+  ++  +E +   L+ ++  
Sbjct: 766 KYFYRHKPLRSLEDVAKDIINLEQKAEGLIAQILG 800


>gi|325662103|ref|ZP_08150721.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471552|gb|EGC74772.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 712

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/714 (32%), Positives = 350/714 (49%), Gaps = 69/714 (9%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++  NFIW  A  L G ++   +  VI+P  ++RR ECALEPT+  V  ++ A    N  
Sbjct: 19  STEVNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEPTKDKVVAQFKA--NPNYP 76

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDFSS 122
            ++  +++G+ FYNTSE++L+ L   + N   N ++Y+ SFS N + I     +  DF  
Sbjct: 77  AKAMYRISGFQFYNTSEFTLAELINDADNLAANFKAYLQSFSPNVQEIIVSAEKGLDFYK 136

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +++K   L  + K FS ++L+P T+ +  M  I+E LIRRF       A D  T RD
Sbjct: 137 QIDKMDKNDRLLSVVKAFSELDLNPRTIDNVKMGYIFEDLIRRFSENA--EAGDHYTGRD 194

Query: 183 VVHLATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           ++ L   +LL +  D +F +   +  T+ D  CGTGG L+ + N +            + 
Sbjct: 195 IIKLMVNILLAEGCDDIFDDGKVI--TVLDQACGTGGMLSTSYNFIKRYNPT----ADVR 248

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE+ PE++A+C+A MLI+   ++       NI    T+ KD F G +  + + NPPF
Sbjct: 249 LFGQEINPESYAICLAEMLIKGQNAE-------NICYQDTMKKDRFAGTKMRFVIENPPF 301

Query: 302 GKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           G  W      E  + AV  E+  G  GR+G GLP   D  MLFL    +KL+   +  GR
Sbjct: 302 GTPWGGKDAAEGVEKAVNDEYVKGFDGRWGAGLPGSGDMQMLFLQSAIDKLD---DNFGR 358

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AAI+ + SPLF G   SGES+IRRWLLENDLIEAI++L +DLF+ T I TY+W+LS  K 
Sbjct: 359 AAIIENGSPLFTGGTTSGESQIRRWLLENDLIEAIISLSSDLFYNTGIITYIWVLSKNKR 418

Query: 416 EERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            ER+GK+QLI+AT     +R   G KR  I  D R+ I  +Y   EN ++S++ +   F 
Sbjct: 419 AERKGKIQLIDATSFCHKLRRVLGNKRNEITPDDRKVITKLYAEFENNEYSKIYNNEEFI 478

Query: 475 YRRIKVLRPLRMSF---------ILDKTGLARLEADITWRKLSPLHQSFWLDILK--PMM 523
           YR   V++P++ S+         ++ K  LA L       +L         +  K   M 
Sbjct: 479 YREYTVMQPMQRSYGISTVRIESMISKGSLATLYDAAKVEELEKSENLTGKEQKKLCSMK 538

Query: 524 QQIYPYGW------------------------AESFVKESIKSNEAKTLKVKASKSFIVA 559
           +    Y +                         E  ++ ++   ++  +    +K  I  
Sbjct: 539 ENYGVYEYILSRLRAESSEQIYYSPNEFIPVLTEILLQNNLPVVQSNEVVKTINKKLIER 598

Query: 560 FINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKI 619
             +   + D  A+   D  G  I D    + E +   ESI +Y  REV P VPDA     
Sbjct: 599 IADGLSQMDKAAEIQRDKKGNIIFDKETKDTEVIKIEESIDEYMEREVLPFVPDAVAFFE 658

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              +  K I + G EI F R+FY+YQ       ++     +E  I+  +  +  
Sbjct: 659 ERMDLKKPIIKTGAEIPFTRYFYKYQTPLSSTVLEDRFIELEKAISDQVRSIFG 712


>gi|299531530|ref|ZP_07044936.1| N-6 DNA methylase [Comamonas testosteroni S44]
 gi|298720493|gb|EFI61444.1| N-6 DNA methylase [Comamonas testosteroni S44]
          Length = 581

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/553 (42%), Positives = 330/553 (59%), Gaps = 34/553 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C L  T+SAV  +        
Sbjct: 2   NQQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLTDTKSAVLAELAVKQKQG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E F+ + +G SFYNTS   L TL   + +   NL SY+ +FS   + +FE F+F   
Sbjct: 62  VNPEPFLLRKSGQSFYNTSALDLKTLLGDTDHIAQNLYSYVQAFSPAVRDVFERFEFHVQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KAGLLY++ + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKAGLLYQVTEKFAQIDLHPNRVSNMQMGLVFEELIRKFSEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA+  + PG++RT+YDPT GTGG L+ A  ++ +   H +    L   
Sbjct: 182 IRLMVNLIFIEDDAILSK-PGVVRTIYDPTAGTGGMLSVAGEYLTEHNPHAR----LTVF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         +I  G+TLS D  T K F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQD-------VASIAFGNTLSDDGHTAKHFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V KEH+  G  GRFGPGL ++SDGSMLFL+HL +K+     GG R  IVL+ 
Sbjct: 290 EWKKVEKEVRKEHEQQGYNGRFGPGLLRVSDGSMLFLLHLISKMRPAQEGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK E R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGIATYVWIISNRKPEARKGKV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYRTFGY 475
           QLI+A+ +W  +R   G KR+ ++D     I  ++      K       SR+ D   FGY
Sbjct: 410 QLIDASGMWQKMRKSLGSKRKELSDAHIEHITRLFGEFVEAKDADGKPLSRIFDNEDFGY 469

Query: 476 RRIKVLRPLR-------MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             I V RPLR       +     + G  + ++ +   +  P  +    DI+    +++ P
Sbjct: 470 HSITVERPLRDEAGVIVLGLKGKQKGKPQPDSSLRDTENVPYTE----DIMAYFQREVLP 525

Query: 529 YGWAESFVKESIK 541
           +        +  K
Sbjct: 526 HAPDAWIDPDKTK 538



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 33/246 (13%)

Query: 436 NEGKKRRIINDDQRRQIL----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
               +R ++ +D    I+    D++ +     +  ++  R    R+ KV        ++D
Sbjct: 361 ESEIRRYVLENDLLEAIVGLPTDMFYNTGIATYVWIISNRKPEARKGKVQ-------LID 413

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            +G+ +        K   L  +    I +   + +         +     + +     + 
Sbjct: 414 ASGMWQKMRKSLGSKRKELSDAHIEHITRLFGEFVEAKDADGKPLSRIFDNEDFGYHSIT 473

Query: 552 ASKSFIVAFINAFGRKDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
             +            +D     V        G+  PD++L + ENVPY E I  YF REV
Sbjct: 474 VERPL----------RDEAGVIVLGLKGKQKGKPQPDSSLRDTENVPYTEDIMAYFQREV 523

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            PH PDA+ID         +  +VGYEI FNR FY ++P R L +ID+ELK    +I  +
Sbjct: 524 LPHAPDAWIDP--------DKTKVGYEIPFNRHFYVFKPPRPLAEIDSELKQTTDRILDM 575

Query: 668 LEEMAT 673
           ++ ++ 
Sbjct: 576 IKGLSA 581


>gi|288986937|ref|YP_003456900.1| N-6 DNA methylase [Allochromatium vinosum DSM 180]
 gi|288898316|gb|ADC64150.1| N-6 DNA methylase [Allochromatium vinosum DSM 180]
          Length = 580

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 228/539 (42%), Positives = 324/539 (60%), Gaps = 29/539 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L+  IW  A+ L GD+K +D+GKVILPFT+LRRL+C LE T+ AV  +  A     
Sbjct: 2   NQTNLSALIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLESTKDAVLAEEKAKRQMG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E F+ +V+G SFYN S   +  L     + + NL SY+  FSD+ + IFE FD  + 
Sbjct: 62  VNPELFLLRVSGQSFYNVSPLDMKKLLGDPDHIKANLLSYLHGFSDDVRDIFEQFDVQTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL K  LLY++ + F+ ++LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 IDRLAKTNLLYQVTERFAQVDLHPNRVSNSQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DDA+    PG++RTLYDPT GTGG L+ A  ++ +     +    L   
Sbjct: 182 IRLMVNLLFIEDDAVL-AKPGVVRTLYDPTAGTGGMLSVAGEYLEEHNPEAR----LTMF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         NI  G+T S+D    + F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQD-------VANIVFGNTFSEDGHPQRTFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + A+ +EH+  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKAIRQEHETLGFSGRFGPGLPRVSDGSLLFLLHLISKMRPAIDGGSRLGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WILSNRK E RRG V
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGISTYVWILSNRKPEHRRGLV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVS-RE--NGK--FSRMLDYRTFGYR 476
           QLI+A+ LW  +R   G KR+ ++D    +I  ++   RE  +GK   SR+     FGYR
Sbjct: 410 QLIDASGLWQKMRKSLGSKRKELSDAHIAEITRLFGECREAYDGKKPISRLFKNSDFGYR 469

Query: 477 RIKVLRPLR-------MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            I V RPLR       +     + G  + +      +  PL +       + ++     
Sbjct: 470 TITVERPLRDEAGNIVLGLKGKQKGKPQPDTSRRDTENVPLAEDVETYFQREVLPHAQD 528



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 116/285 (40%), Gaps = 43/285 (15%)

Query: 406 YLWIL----SNRKTEERRGKVQLI--NATDLWTSIR---NEGKKRRIINDDQRRQIL--- 453
            L  L    S  +     G    I  N + L+T          +R ++ +D    I+   
Sbjct: 322 SLLFLLHLISKMRPAIDGGSRLGIVLNGSPLFTGGAGSGESEIRRYVLENDLVEAIIGLP 381

Query: 454 -DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
            D++ +     +  +L  R   +RR  V        ++D +GL +        K   L  
Sbjct: 382 TDMFYNTGISTYVWILSNRKPEHRRGLVQ-------LIDASGLWQKMRKSLGSKRKELSD 434

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           +   +I +   +    Y   +  +    K+++     +   +            +D   +
Sbjct: 435 AHIAEITRLFGECREAYD-GKKPISRLFKNSDFGYRTITVERPL----------RDEAGN 483

Query: 573 PVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
            V        G+  PDT+  + ENVP  E ++ YF REV PH  DA+ID         + 
Sbjct: 484 IVLGLKGKQKGKPQPDTSRRDTENVPLAEDVETYFQREVLPHAQDAWIDH--------DK 535

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +VGYEI FNR FY ++P R L DIDA+LK    +I T++E ++ 
Sbjct: 536 TKVGYEIPFNRHFYVFEPPRPLADIDADLKRCTDRILTMIEGLSA 580


>gi|311694469|gb|ADP97342.1| type I restriction-modification system, methyltransferase subunit
           [marine bacterium HP15]
          Length = 807

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 233/817 (28%), Positives = 366/817 (44%), Gaps = 172/817 (21%)

Query: 7   SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLA 61
           +   L +FIW  A+D L   +    +  VILP  +LRRL+  L PT+ AV E+       
Sbjct: 5   AHNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLMPTKEAVLEEVRFQKEE 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIF 115
              + +D       +GY FYN S+++L++L +T T N      N E Y+  FS N + I 
Sbjct: 65  MDATELDPAPLKAASGYVFYNVSKWTLTSLYNTATNNRQILLANFEEYLKGFSPNVQEII 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHL 162
           E F+  S I  +    +L  + + F    I L P               +  M  ++E L
Sbjct: 125 ECFELKSKIQHMAHKDVLLDVVEKFVSPKINLTPKDALDPDGYKLPGLSNLGMGYVFEEL 184

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT+
Sbjct: 185 IRKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDDLPLTLTVYDPACGSGGMLTE 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + N + +          +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTL
Sbjct: 241 SQNFIEEKYPSDN--RDIYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGSTL 291

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLP 329
           S D F   RF + LSNPP+GK W  ++  + K+  +    RF                 P
Sbjct: 292 STDEFASDRFDFMLSNPPYGKSWASEQKHI-KDGSDVIDPRFKIQLKDYWGNEEDCDATP 350

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END +
Sbjct: 351 RSSDGQLLFLMEMVSKMKDPATGSKGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWL 410

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIV LP +LF+ T I TY+W+L+N K   RRGKVQLI+A+ L+  +R N G K      
Sbjct: 411 EAIVQLPNNLFYNTGITTYIWVLNNNKPANRRGKVQLIDASLLYRKLRKNLGNKNCEFAP 470

Query: 447 DQRRQILDIY-----VSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           D   QI   Y     + RE        G  S++     FGY ++ + RP R      +  
Sbjct: 471 DHIEQITRTYLDCTAIERELDANNDPVGIASQVFRNEDFGYHKVTIERPDRRKAQFSEER 530

Query: 495 LARLEADITWRK---------------------------------------------LSP 509
           +A L  D    +                                             L+ 
Sbjct: 531 IAGLRFDKQISEVMEHLYAEHGDKVYDSTGHGKDNKQSFLKSIEKPVMAWCDDNDISLNT 590

Query: 510 LHQSFWLDILKP------------MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
             ++  LD+ +             +M  I    + +    +     E K  K+K S +  
Sbjct: 591 KAKTKLLDVKRWASLKAIYETARELMAAIGQDEFDDFNQFKKQVDTELKARKLKLSATEK 650

Query: 558 VAFINAFGRKDPRADPVT------------------DVNGEWIPD--------------- 584
            A +NA    D  A+ V                   D + E +PD               
Sbjct: 651 NAILNAISWYDETAEKVVKKVVKLNGDKLDELLHRYDCSAEQLPDYGLYPTGKANEYITF 710

Query: 585 ---TNLTEYENVPYLES-----IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
              ++L + E++  L+      I  YF+ EV PHV +A+I+         +  ++GYEI+
Sbjct: 711 ESSSDLRDSESIALLKDGEKQGIHGYFLAEVKPHVEEAWINL--------DSTKIGYEIS 762

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FN++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 763 FNKYFYRHKPLRSLEEVAQDIISLEQKAEGLIAQILG 799


>gi|291540899|emb|CBL14010.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 710

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 232/707 (32%), Positives = 343/707 (48%), Gaps = 53/707 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + +   +     +W  A  L G +    +  VI+P  ++RR ECALE T+ AV  K+   
Sbjct: 13  DTSIDVSKEVGLVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEATKDAVVAKHKQ- 71

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-D 119
              N+      +V+ Y FYN SEY+L  L   S +  +NL+SYI  FS N + I E    
Sbjct: 72  -NPNLPAALLCQVSKYPFYNYSEYTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLK 130

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS+ I +++K+  LY + K FS ++L+P  V    M  I+E +IRRF       A D  T
Sbjct: 131 FSTQIDKMDKSNRLYSVVKKFSELDLYPTHVDSMKMGYIFEDIIRRFSENA--EAGDHYT 188

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +LL           G I T+ D  CG+GG L+   + +     +      
Sbjct: 189 PREVIRLMVNVLLAEGCNDLLTDEGKIATVLDAACGSGGMLSTTYDFLRRKNPY----VD 244

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQE+ PE++A+C+A MLI+  +           ++ +TL  D F  ++    + NP
Sbjct: 245 VRLFGQEINPESYAICLADMLIKGQD----VKNIMGDEEANTLKTDCFPDQKMRLVIMNP 300

Query: 300 PFGKKWEKDKDAVEKEHK----NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PFG  W        +E K    N + GRF  GLP   D  +LF+ H  NKL+      GR
Sbjct: 301 PFGTPWGGKDAPEGQEKKVREENKKGGRFEHGLPGTGDAQLLFMQHAINKLD---EKNGR 357

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AAI+ + SPLF+G   SGES+IRRW+L+ DLIEAI+ALPT LF+ T+I  Y++ILS  K 
Sbjct: 358 AAIITNGSPLFSGGTTSGESQIRRWMLKEDLIEAIIALPTQLFYNTDIGIYIFILSRNKR 417

Query: 416 EERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            +RRGKVQLINA D+W  +R   GKKRR I+ D   +I ++Y + E  K+ ++     F 
Sbjct: 418 PDRRGKVQLINAVDMWKPLRKSLGKKRREIDRDSMVKITELYSNFEENKYCKIFPNEEFM 477

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-------MQQIY 527
           Y+   V +PL+   +LD   + RL     +   S +      + LK M        ++  
Sbjct: 478 YKEYAVYQPLQRRGMLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQ 537

Query: 528 PYGWAESFVKESIKSNEA-----------------KTLKVKA---SKSFIVAFINAFGRK 567
            Y   + FV + +   EA                 K+L  K    S S +          
Sbjct: 538 KYLAGQQFVVDVLTILEANRSDQMFMDYGEFEKYLKSLLGKVEGMSASRLTGIAMVLAVM 597

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D  A    D  GE I DT   + E +   +  + YF  EV PHVPDA     F  EK + 
Sbjct: 598 DKTAVVQKDRKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWVYEFDPEKKES 657

Query: 628 IG---RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                ++G E  F RFFY+Y+   K  D+  +   +E  ++  +  +
Sbjct: 658 PTNKEKLGAEFPFTRFFYEYKEPEKADDLLVQFMELEKSLSEKIAAL 704


>gi|120601538|ref|YP_965938.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120561767|gb|ABM27511.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 580

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 231/539 (42%), Positives = 323/539 (59%), Gaps = 29/539 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +++G+VILPFT+LRRL+  LE T+ AV E+  +     
Sbjct: 2   NQQSLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDSVLESTKVAVLEELESRQKLG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           I  + F+ +V+G SF+NTS   +  L     +   NL SY+  FS   + IFE F+F + 
Sbjct: 62  IAPDPFLLRVSGQSFFNTSPLDMKKLIGDQDHIGENLYSYLNGFSPEVRDIFERFEFHAQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY++ + F+ + LHPD V +  M  I+E LIR+F    +E A +  TPR+V
Sbjct: 122 IDRLNKAGLLYQVAERFAQVNLHPDEVDNHQMGLIFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DD +  + PG++RT+YDPT GTGG L+ A  ++ D     +    L   
Sbjct: 182 IRLMVNLIFIEDDDILSK-PGVVRTIYDPTAGTGGMLSIAGEYLDDHNPDAR----LTMS 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         NI  G+TLS D   GK F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQDVS-------NITFGNTLSDDGHAGKHFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V KEH+  G  GRFGPGLP+ISDGSMLFL+HL +K+     GG R  IVL+ 
Sbjct: 290 EWKKVEKEVRKEHEQQGFNGRFGPGLPRISDGSMLFLLHLISKMRPAAEGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T I+TY+WI+SNRK   R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGISTYVWIVSNRKAAHRKGKV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476
           QLI+A+ +W  +R   G KR+ ++DD   +I+ +Y      K      SR+ +   FGYR
Sbjct: 410 QLIDASAMWQKMRKSLGSKRKELSDDHISEIVRLYGEFAEAKLDGKPVSRIFNSSDFGYR 469

Query: 477 RIKVLRPLR-------MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            I V RP R       +       G    ++ +   +  PLH+       + ++  +  
Sbjct: 470 TITVERPTRDEAGNIMLGQRGKAKGKPVPDSKLRDTENVPLHEDVEAYFKREVLPHVPD 528



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 34/246 (13%)

Query: 436 NEGKKRRIINDDQRRQIL----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
               +R ++ +D    I+    D++ +     +  ++  R   +R+ KV        ++D
Sbjct: 361 ESEIRRYVLENDLLEAIVGLPTDMFYNTGISTYVWIVSNRKAAHRKGKVQ-------LID 413

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            + + +        K   L      +I++ +  +          V     S++     + 
Sbjct: 414 ASAMWQKMRKSLGSKRKELSDDHISEIVR-LYGEFAEAKLDGKPVSRIFNSSDFGYRTIT 472

Query: 552 ASKSFIVAFINAFGRKDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
             +            +D   + +        G+ +PD+ L + ENVP  E ++ YF REV
Sbjct: 473 VERP----------TRDEAGNIMLGQRGKAKGKPVPDSKLRDTENVPLHEDVEAYFKREV 522

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            PHVPDA+ID         +  +VGYEI FNR FY + P R L +IDA+LK    +I  +
Sbjct: 523 LPHVPDAWIDH--------DKTKVGYEIPFNRHFYVFTPPRPLAEIDADLKQTTDRIKAM 574

Query: 668 LEEMAT 673
           +E +  
Sbjct: 575 IEGLMA 580


>gi|327184405|gb|AEA32850.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 695

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 221/695 (31%), Positives = 340/695 (48%), Gaps = 58/695 (8%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  +   +    +G VI+P T++RR ECALEPT+  V  +Y           +
Sbjct: 19  ANFIWSIANKIRAAYMPDKYGDVIIPMTIIRRFECALEPTKDQVLAQYQEM--PEFPAMA 76

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           F ++ GY FYNTS++ L  L     N   N ++YI+ FS + + I +  D S  I ++  
Sbjct: 77  FYQITGYQFYNTSKFDLKELCNDPDNIAENFKAYISGFSKDVQEILKQLDMSGQIDKMND 136

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              LY + K FS I+L  +      M  I+E+LI RF    +  A  F T RD++ L  +
Sbjct: 137 NNCLYSVVKAFSEIDLSVEHFDSIKMGYIFENLIGRF--YQNVDAGQFYTGRDIIKLCVS 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LLL        +   +I T+ D  CGTGG L+ A  ++     H+     +  +GQE+  
Sbjct: 195 LLLAEGCDDITDKNKVI-TVIDQACGTGGMLSTAYTYLK----HYNPTADVHLYGQEMMG 249

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305
           +++AV +A MLI+    D       N +   TL +D F  ++  + L NPPFG  W    
Sbjct: 250 QSYAVGLAEMLIKNQNID-------NFKIADTLKEDCFPDRKMRFALENPPFGTPWGGKD 302

Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             +  +DAV++E+  G+  R+  GLP   D  +LFL     KL       GRAAI+ + S
Sbjct: 303 AKDGQEDAVKEEYAKGKNSRWPAGLPASGDSQLLFLQSALAKL----EDNGRAAIIENGS 358

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G   SGES+IRRWLLEND +EAIVA+PTDLF+ T IATY+WILS  K+E+RRGKVQ
Sbjct: 359 PLFTGNTASGESQIRRWLLENDYLEAIVAMPTDLFYNTGIATYIWILSKNKSEKRRGKVQ 418

Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+AT+++T +R   G K+   + + R +I  +Y        S++     F YR   V +
Sbjct: 419 LIDATNIYTKLRKPLGNKKNEFSPENRAEITKLYTDFSENDLSQIHANNEFIYREYTVKQ 478

Query: 483 PLRMSFILDKTGLAR---------LEADITWRKLSPLH-----------------QSFWL 516
           PL+  + + +  + +            +   ++L                     ++ + 
Sbjct: 479 PLQRDYGITEARIQQMLQSTSVKNFYDEAKVQELESSETKLKAKDAKKLAKYKKNEAVYK 538

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            ++  + + I    W      E +  N    +     K  I   ++   + D +A+   D
Sbjct: 539 QMMSILKENISNKLWMSPEEFEPVLHNLLDGI---VDKKLISKIMDGLSQMDKKAEIQHD 595

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
             G  + D    + E V   E I DY  +EV P VPDA         K K + + G EI 
Sbjct: 596 RKGNIVYDKETADTEIVNIDEPIDDYMQKEVLPFVPDAKAFFDEDLGKKKPVIKTGAEIP 655

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           F R+FY+YQ     + + +E+  +EA I+  ++ +
Sbjct: 656 FTRYFYKYQKPEDSEKLASEINKLEAAISEEMDSL 690


>gi|149280203|ref|ZP_01886326.1| type I restriction-modification system methyltransferase subunit
           [Pedobacter sp. BAL39]
 gi|149229040|gb|EDM34436.1| type I restriction-modification system methyltransferase subunit
           [Pedobacter sp. BAL39]
          Length = 633

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 223/662 (33%), Positives = 339/662 (51%), Gaps = 60/662 (9%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDL-------ESFVKVAGYSFYNTSEYSLST 90
            T+LRR +  LE ++S V +++ +                   K+ G  FYNTS ++   
Sbjct: 1   MTVLRRFDSVLENSKSDVLQEFESLKVRYKGEIPPSILSSKLEKITGQKFYNTSPFTFEK 60

Query: 91  LG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           L     +   +L SYI  FS N + IFE FDF   I  +  A +LY I   F+ + LHP 
Sbjct: 61  LKGAPDSIAQDLVSYINGFSPNVRRIFEYFDFEKEIFAMNDANILYLIVSEFAKVNLHPS 120

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            V +R M  I+E+LIRRF    +E A D  TPR+++ L   LL   DD   ++   + R 
Sbjct: 121 LVSNRDMGLIFENLIRRFNELANETAGDHFTPREIIKLMVNLLFVDDDKFLRDKYHL-RK 179

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DPTCGTGG L++A N++    S      IL+ +GQE     +A   + +LI+   SD 
Sbjct: 180 ILDPTCGTGGMLSEAKNYLKQNNSDI----ILLTYGQEYNKRAYATAASDLLIKGRSSDK 235

Query: 269 RRDLSK---NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +    I+ G TL++D F    F Y ++NPPFG  W+K K  ++++      GRF 
Sbjct: 236 VGKYEQAEGEIKFGDTLTEDQFEDDTFDYLIANPPFGVDWKKQKPQIDRDKT----GRFE 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            GLP+++DG++LFL H+ +K E         G R AIV S SP+F+G AGSGES+IR+W+
Sbjct: 292 AGLPRVNDGALLFLQHMISKFEPYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWI 351

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +END +E I+ALP  +F+ T I TY+W+L+NRK++ R+GK+QL +A + +  +R     +
Sbjct: 352 IENDWLEGIIALPEQMFYNTGINTYIWVLTNRKSKNRKGKIQLFDAREFYIQMRKSQGSK 411

Query: 442 R--------------IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           R              ++  +Q  +I+  Y   +N   +++ D   FG+ R+ V RPLR+ 
Sbjct: 412 RRKIGEGEVDDGIIHVMEPNQIAEIITEYGQFDNTTNAKLFDNEDFGFTRVTVERPLRLK 471

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
           + +           + +    P        I K + Q+I             +  +  K 
Sbjct: 472 YQMTAER------KLAFLDACPHLLDDVQTIDKKLGQEIL-------MDWNKVLKDIKKI 518

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
            + K S   +V F N F  KDP A  V     ++  D +L E+ENVP    I  YF  EV
Sbjct: 519 SEQKWSARELVIFRNVFTDKDPEAAKVQKGKNDFEADADLREFENVPLKIDIDTYFKNEV 578

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            P  PDA+         D+   +VGYEINFNR+F++   +R L+ I+ EL  +E +I  L
Sbjct: 579 LPFAPDAW--------TDRSKDKVGYEINFNRYFFKNAENRSLKVINKELSEIEKEILEL 630

Query: 668 LE 669
           L 
Sbjct: 631 LN 632


>gi|331007180|ref|ZP_08330393.1| N-6 DNA methylase [gamma proteobacterium IMCC1989]
 gi|330419012|gb|EGG93465.1| N-6 DNA methylase [gamma proteobacterium IMCC1989]
          Length = 817

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 222/822 (27%), Positives = 362/822 (44%), Gaps = 176/822 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV ++        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKQAVLDEVKFQKEDM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D E     +G  FYN S+++L +L S  T N      N E Y+  +SDN K I E
Sbjct: 66  DATELDDEPLKAASGQVFYNVSKWTLKSLFSNATNNQQILLANFEEYLNGYSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L P+   D             M  ++E LI
Sbjct: 126 RFELFSKIRHMAGKDVLLDVLEKFVSPYINLTPNPAEDPDGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+   +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----IKDDLPLTITVYDPACGSGGMLTES 241

Query: 224 MNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            N + +        K    +  +G+E+  ET+A+C + M+I+        +  +NI+ GS
Sbjct: 242 QNFIEEKYPTQKEGKSIRDIYLYGKEINDETYAICKSDMMIKG-------NNPENIKVGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PG 327
           TLS D F   RF + LSNPP+GK W  ++  + K+       RF                
Sbjct: 295 TLSTDEFASDRFDFMLSNPPYGKSWASEQKNI-KDGGEVIDPRFKVELSDYWGNKETVDA 353

Query: 328 LPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + +K++ P     G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVSKMKSPSTSPMGTRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIR-NEGK 439
           +++AIV LP +LF+ T I TY+W+L+N K       +RRGKVQLI+A+ L+  +R N G 
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKKGDGKGPDRRGKVQLIDASLLYRKLRKNLGN 473

Query: 440 KRRIINDDQRRQILDIYVSRENGK-----------------FSRMLDYRTFGYRRIKVLR 482
           K      +   +I   Y+     +                  S++ +   FGY ++ + R
Sbjct: 474 KNCEFAPEHIAEITQAYLDCAEVERELDASAPEGMGDPIGIASQVFNNEDFGYYKVNIER 533

Query: 483 PLRMSFILDKTGLARLEADITWRKLSP--------------------------------- 509
           P R         +A L  D +  ++                                   
Sbjct: 534 PDRRKAKFSPEAIAPLRFDKSLAEVMEHLFEEHGDKVYDKGFLKGISKDILQWCEDNDIS 593

Query: 510 ---------LHQSFWLDIL------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                    L + +W  +L        +M++I    + +  + +       K  K+K S 
Sbjct: 594 INAKAKAKLLDEKYWQKLLVILEAANLLMREIGSDEFNDFNLFKDKVDAVFKAQKIKLSA 653

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGE---------------------------------- 580
               A +N     +  A+ V     +                                  
Sbjct: 654 PEKKAILNVVSWYEESAEKVVKKIVKLSGNKLDELLDHLGCSQDQLADFGFYPTSDCGDS 713

Query: 581 ---------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
                    + P ++L + E+VP  + I +YF+ EV PHV +A+I+         +  ++
Sbjct: 714 KKSAGEYVTYEPSSDLRDSESVPLAQEIHEYFLEEVKPHVEEAWINL--------DSTKI 765

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GYEI+FN++FY+++P R L ++  ++  +E +   L+ ++  
Sbjct: 766 GYEISFNKYFYRHKPLRSLDEVANDIIDLEQKAEGLIAQILG 807


>gi|259502614|ref|ZP_05745516.1| type I restriction-modification [Lactobacillus antri DSM 16041]
 gi|259169429|gb|EEW53924.1| type I restriction-modification [Lactobacillus antri DSM 16041]
          Length = 699

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 219/697 (31%), Positives = 348/697 (49%), Gaps = 64/697 (9%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  L G +    +G VI+P T++RR ECALEPT+  V  +Y A         +
Sbjct: 19  ANFIWSIANKLRGTYMPDKYGDVIIPMTIIRRFECALEPTKDKVLAQYEAM--PTYPARA 76

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             K++G+ FYNTS++ L  L     N  +N +SY+A FS + + I  + D  S I +++K
Sbjct: 77  MYKISGFQFYNTSKFDLQELCNDPDNINSNFKSYLAGFSADVQEILRNLDIESNIDKMDK 136

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            G LY + K FS ++L         M  I+E+LI RF    +  A  F T RD++ L  +
Sbjct: 137 GGCLYNVVKAFSELDLSVAKFDSIKMGYIFENLIARF--YQNVDAGQFYTGRDIIRLCVS 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LLL        E   ++ T+ D  CGTGG L+ A  ++            +   GQEL  
Sbjct: 195 LLLAEGSEDILEDNKVV-TVLDQACGTGGMLSTAYTYLKHLNPT----VDVHLFGQELMG 249

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305
           +++AV +A MLI+    D       N +   TL +D F  ++  + L NPPFG  W    
Sbjct: 250 QSYAVGLAEMLIKDQNID-------NFKHADTLKEDCFPDQKMRFVLENPPFGTPWGGKD 302

Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             +  +++V++E+  GE  R+  GLPK +D  +LF+    +KL    +  GRAAI+ + S
Sbjct: 303 AKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKL----DDNGRAAIIENGS 358

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G   SGES++RRWLLEND ++ IVA+PTDLF+ T +ATY+WILS  K+++R+GKVQ
Sbjct: 359 SLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNKSQKRKGKVQ 418

Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            I+AT+++  +R   GKK+   + + R QI  +Y        S++ D   F YR   V++
Sbjct: 419 FIDATNIYEKLRKPLGKKKNEFSKENREQITKLYTDFVENDISQIHDNTEFIYREYTVMQ 478

Query: 483 PLRMSFILDKTGLARL--------------EADITWRKLS--------------PLHQSF 514
           PL+ S+ + +  + ++              E   + +KLS              P++   
Sbjct: 479 PLQRSYAITEQRIEKMLPNLNSFFDPVKFNELQESNKKLSARDVKKLTKFKKNKPIYDQL 538

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
              +   +  +IY    + + V E++ SN          K  +   ++   + D  A+  
Sbjct: 539 ISILRDNISDKIYKSPESFAPVAENLLSNI-------IDKKLLKKVVDGLSQMDKSAEIQ 591

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
            D  G  I D +  + E V     I+ Y  +EV P + DA         K K + + G E
Sbjct: 592 NDKKGNIIYDKDTADTEIVNIKTPIEQYMAKEVLPFISDAKAFFEEDLGKKKPVIKTGAE 651

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           I F R+FY+YQ  + ++ +   +  +E  I+  +  +
Sbjct: 652 IPFTRYFYRYQMPQSVEKLQNMIDNLEQSISVEMNNL 688


>gi|293401125|ref|ZP_06645269.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305251|gb|EFE46496.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 675

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 212/704 (30%), Positives = 340/704 (48%), Gaps = 77/704 (10%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLA 61
                ++ +FIW  A+D L   +    +  VILP T++RRL+  LE T+ AV   ++ + 
Sbjct: 7   NQVHNAIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEDTKPAVLAMKEKMD 66

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFED 117
             G      +    AG +F N+S + L  L S   +     + E+Y+  FS N + I E 
Sbjct: 67  AAGITNQWPALCNAAGQAFCNSSPFLLKDLTSRAKKQTLKVDFEAYLDGFSPNVQEILEK 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV--------------PDRVMSNIYEH 161
           F F + I  +  A +L  + + F    I L P  V               +  M  ++E 
Sbjct: 127 FKFRNQIDTMIDADILGAVIEKFISPTINLSPKPVYTDDTMKTIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+RRF    +E A +  TPRDVV L   L+  P     K++     + YD  CGTGG LT
Sbjct: 187 LVRRFNEANNEEAGEHWTPRDVVDLMADLIFIPIADQIKDATY---SCYDGACGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A + +            +   GQE++PET+A+C A ML++        + +++I  GST
Sbjct: 244 VAQDRLMTLARRRGKDVSIHLFGQEVQPETYAICKADMLLKG-----DGEQAEHIAYGST 298

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GLPKIS 332
           LS D    ++F + L+NPP+GK W+ D + +    K+    RF            +P+  
Sbjct: 299 LSADGNASRQFDFMLANPPYGKSWKTDAEKMGG-KKDILDSRFNAYLEDGTQLSMIPRTK 357

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG +LFL++  +K++     G R A V + S +F G AGSGES  RR+L+ENDL+EAI+A
Sbjct: 358 DGQLLFLLNNVSKMKTDTPLGSRIAEVHNGSSIFTGDAGSGESNARRYLIENDLVEAIIA 417

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQ 451
           LP  +F+ T + T++W+LSN+K + R+GK+QLI+AT + T  ++  G K   ++ + R++
Sbjct: 418 LPDRMFYNTPLNTFVWVLSNKKEQRRKGKIQLIDATAMKTPLLKKLGDKGFELSPENRKE 477

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           I+ I++  +  +  R+ D   FG+  I V RPLR+    ++         I    L    
Sbjct: 478 IIRIFMEMQESEICRVFDNDEFGHWAITVERPLRLRVYPERK--------IPSGILKAAE 529

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
           +  +  I++ + Q +    W  SF K +           K     +         KD  A
Sbjct: 530 EEQYYSIIEKIKQNVDLSDWT-SFAKAT-----------KLKAGVLKKIRPFITEKDASA 577

Query: 572 DPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
            P+        PD  L + E VP  Y   I+ +   EV  + PDAYID+           
Sbjct: 578 KPIA-----GEPDVELRDTEIVPLTYEGGIEAFLDNEVRTYSPDAYIDE--------SKT 624

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +GYEI+FN++FY+ +  R+ + I  EL  +E     ++EE+  
Sbjct: 625 TIGYEISFNKYFYKAKELRESETIVKELMTLEKSATEMMEELFG 668


>gi|119513481|ref|ZP_01632505.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414]
 gi|119461861|gb|EAW42874.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414]
          Length = 575

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/603 (32%), Positives = 307/603 (50%), Gaps = 62/603 (10%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTV----------- 150
           +  FSDN K I   F+  + I R+ +A +L+ + + F+   I L P  +           
Sbjct: 1   MDGFSDNVKEIISKFELRNQIRRMVEADVLHDVLEKFTSTDINLSPHEIVDSKGETLPGL 60

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +  M  ++E LIR+F  E +E A +  TPR+V+ L   LL  P     K+    + T+Y
Sbjct: 61  SNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIKLMIHLLFIP----IKDEIPPVITVY 116

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+GG LT++   +            +  +G+E+  ET+A+C + M+I+  + +   
Sbjct: 117 DGACGSGGMLTESQGFIEAAEGEINSQSKVYLYGKEVNGETYAICKSDMMIKGNDPE--- 173

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG----- 325
               NI+ GSTL+ D F   RF + LSNPP+GK ++ D+  +  + K     RF      
Sbjct: 174 ----NIKFGSTLATDDFGEMRFDFMLSNPPYGKSYKSDQKYIL-DGKEVLDPRFQVELQN 228

Query: 326 --------PGLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGES 375
                   P +P+ SDG +LFLM +  K++       G R A + + S LF G AGSGES
Sbjct: 229 FQGQLETLPAIPRSSDGQLLFLMDMVGKMKPLNQSPLGSRIASIHNGSALFTGDAGSGES 288

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IRRW++END +E IV LP ++F+ T IATY+W+LSNRK E+RRGKVQLI+ T+ +  +R
Sbjct: 289 NIRRWIIENDWLECIVGLPLNMFYNTGIATYIWVLSNRKPEKRRGKVQLIDGTEWYGKLR 348

Query: 436 -NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            N GKK   +  +  +QI + ++  E    S++ D + FGY +I V RPLR+SF +    
Sbjct: 349 KNLGKKNCELTPENIQQITETFLRFEETAESKIFDNQDFGYHKITVERPLRLSFQVTPER 408

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           + +            L       +L  +        + +  + +       K    K + 
Sbjct: 409 VEQF---------GSLADDKLYPVLGILKDLFGDEVYQDFNLVKQKLEKALKAEGFKLAA 459

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGE----WIPDTNLTEYENVPYLESIQDYFVREVSPH 610
             +    + F  KD  A+ V     +    +  D+ L + ENVP  E IQ+YF REV PH
Sbjct: 460 KDLKLVYDTFTEKDETAEAVIKKKTKAGVVYESDSELRDTENVPLKEDIQEYFNREVLPH 519

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           VPDA+I        D E    GYEI+F ++FY++QP R L DI A++  +EA+   +L+ 
Sbjct: 520 VPDAWI--------DFEKTVRGYEISFTKYFYKFQPLRSLADIAADILALEAETEGVLKA 571

Query: 671 MAT 673
           +  
Sbjct: 572 VIG 574


>gi|255657324|ref|ZP_05402733.1| type I restriction-modification system specificity subunit
           [Clostridium difficile QCD-23m63]
          Length = 725

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 213/726 (29%), Positives = 351/726 (48%), Gaps = 80/726 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNF--SGIELHP------------DTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F  S + L P              + +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDGTY---SIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D    +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +
Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGP------GLPKISDG 334
           G+ F + LSNPP+GK W+ D           ++K   +    R          +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-ETELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL
Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++           
Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541

Query: 503 --------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK-ESIKSNEAKT 547
                         + ++L           +   M+    Y   E+F K  +        
Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
                SK      +     +D  A+  TD  G  I D  L + E++P  ++  I ++  +
Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++D+           ++GYEINF ++FY+ +    ++DI   +K +E +  
Sbjct: 662 EVLPYHEDAFVDE--------SKTQIGYEINFTKYFYKAKKLESVEDIVCRIKELEKRSD 713

Query: 666 TLLEEM 671
            ++E +
Sbjct: 714 GMMETV 719


>gi|149175699|ref|ZP_01854318.1| type I restriction-modification [Planctomyces maris DSM 8797]
 gi|148845418|gb|EDL59762.1| type I restriction-modification [Planctomyces maris DSM 8797]
          Length = 580

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 227/548 (41%), Positives = 332/548 (60%), Gaps = 25/548 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L++FIW  A+ L GD+K +++GKVILPFT+LRRL+C LEPT+ AV ++      +N
Sbjct: 2   NQQQLSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEPTKDAVLKEKEKREAAN 61

Query: 67  IDLESFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           I+ E F+K      FYNTS   +  L     + R NL SYI SFSD+ + IFE F+F + 
Sbjct: 62  INPEPFLKKKSQQLFYNTSPLDIKKLMGDQDHIRENLFSYIESFSDSVRDIFECFEFHTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ ++LHPD V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKADLLYMVTEKFANVDLHPDVVSNAQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD    + PG++R+LYDPT GTGG L+ A  H++      +    LV +
Sbjct: 182 IRLMVNLLFIEDDDALTK-PGIVRSLYDPTAGTGGMLSIAEEHLSGQNPDAR----LVMY 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +             G+TLS+D   G+ F Y LSNPPFG 
Sbjct: 237 GQELNAESYAICKADMLIKGQDISKII-------HGNTLSEDGLPGEHFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  +++EH+ +G  GRFGPGLP++SDGS+LFLMHL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKIQKEIKREHQQDGFNGRFGPGLPRVSDGSLLFLMHLISKMRPAKDGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WI++NRK + R+GKV
Sbjct: 350 SPLFTGSAGSGESEIRRYVLENDLLEAIIGLPTDMFYNTGISTYIWIVTNRKPKHRKGKV 409

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVS-RENGK----FSRMLDYRTFGYR 476
           QLI+A+ +W  +R   G KR+ ++ +   +I  ++ + ++  K     SR+     FGY+
Sbjct: 410 QLIDASCMWQKMRKSLGSKRKELSSEHIDEITRLFGNAKKVTKGGTPISRIFKTTDFGYQ 469

Query: 477 RIKVLRPLRMSF--ILDKTGLARLEADITWRKLSPLHQ-SFWLDILKPMMQQIYPYGWAE 533
            I V RP R     I+ +T   R        KL          D+ +   +++ P+    
Sbjct: 470 TITVERPERDEDGNIVKETKGKRKGQPKIDTKLRDTEDVPLNEDVDEYFQREVLPHVPDA 529

Query: 534 SFVKESIK 541
               +  K
Sbjct: 530 WIDHDKTK 537



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 30/236 (12%)

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              + +       D++ +     +  ++  R   +R+ KV                 ++A
Sbjct: 370 ENDLLEAIIGLPTDMFYNTGISTYIWIVTNRKPKHRKGKV---------------QLIDA 414

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
              W+K+    +S      +   + I          K+  K     +   K +       
Sbjct: 415 SCMWQKM---RKSLGSKRKELSSEHIDEITRLFGNAKKVTKGGTPISRIFKTTDFGYQTI 471

Query: 561 INAFGRKDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI 616
                 +D   + V        G+   DT L + E+VP  E + +YF REV PHVPDA+I
Sbjct: 472 TVERPERDEDGNIVKETKGKRKGQPKIDTKLRDTEDVPLNEDVDEYFQREVLPHVPDAWI 531

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           D         +  ++GYEI FNR FY ++P R L +IDAELKGV   I  ++ E++
Sbjct: 532 DH--------DKTKIGYEIPFNRHFYVFKPPRTLDEIDAELKGVTDNIVAMIGELS 579


>gi|168362838|ref|ZP_02696012.1| type I restriction-modification system specificity subunit
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|171903053|gb|EDT49342.1| type I restriction-modification system specificity subunit
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
          Length = 725

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 212/726 (29%), Positives = 350/726 (48%), Gaps = 80/726 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNF--SGIELHP------------DTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F  S + L P              + +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDGTY---SIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D    +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +
Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGP------GLPKISDG 334
           G+ F + LSNPP+GK W+ D           ++K   +    R          +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-ETELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL
Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++           
Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541

Query: 503 --------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK-ESIKSNEAKT 547
                         + ++L           +   M+    Y   E+F K  +        
Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
                SK      +     +D  A+  TD  G  I D  L + E++P  ++  I ++  +
Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++D+           ++GYEINF ++FY+ +    ++DI   +K +E +  
Sbjct: 662 EVLPYHEDAFVDE--------SKTQIGYEINFTKYFYKSKKLESVEDIVCRIKELEKRSD 713

Query: 666 TLLEEM 671
            ++  +
Sbjct: 714 GMMATV 719


>gi|303235379|ref|ZP_07321996.1| N-6 DNA Methylase [Finegoldia magna BVS033A4]
 gi|302493500|gb|EFL53289.1| N-6 DNA Methylase [Finegoldia magna BVS033A4]
          Length = 705

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 220/710 (30%), Positives = 343/710 (48%), Gaps = 56/710 (7%)

Query: 1   MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+  +      ANFIW  A  L G +    +G VI+P T++RR EC LE T+ AV EKY
Sbjct: 10  MTDDVSIDITQEANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKY 69

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                 +    +  +++G  FYNTS ++L  L     N ++N   YI SFS N   I   
Sbjct: 70  T--DNKSYPERAMYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQ 127

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +  + I ++ K   L+ + K FS ++L  +T     M  I+E+LI RF    +  A  +
Sbjct: 128 LEIKTHIKKMNKENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRF--YQNVDAGQY 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T RD++ +   ++         +   +I T+ D   GT G LT A NH+ +        
Sbjct: 186 YTGRDIIKMMVYVITAEGCDDIYDEGKVI-TIADQAAGTSGMLTTAYNHLHNLNP----K 240

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +   GQE+  +++AV +A MLI+  ++       +N +   T  +D F   +  + L 
Sbjct: 241 ADIRLFGQEIMGQSYAVGLAEMLIKGQDA-------RNFKHADTFKEDFFEDTKMRFVLE 293

Query: 298 NPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           NPPFG  W         + AV + HK G   R+  GLP   D  +LF+    +K++   +
Sbjct: 294 NPPFGMSWGGKDAKAGQEQAVLENHKRGIDSRWPAGLPSSGDAQLLFMQSAIDKMD---D 350

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRAAI+ + SPLFNG   SGES+IRRWLLENDLIEAI+A+PT+LF+ T IATY+WILS
Sbjct: 351 EHGRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIAMPTELFYNTGIATYVWILS 410

Query: 412 NRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             K +ER GK+QLI+AT+++ ++R   G KR+    + R+ I  +Y        S++ + 
Sbjct: 411 KNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKTITKLYSDFVENDKSKIYEN 470

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEAD---------------ITWRKLSPLHQSFW 515
             F YR   V++PL+ S+ ++   +  LE                 +  ++ S       
Sbjct: 471 EEFIYREYTVMQPLQRSYAINDERIENLETSGKLNSFYDKTKHDDILEKQETSEKLTKTE 530

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK------------VKASKSFIVAFINA 563
            + LK   +    Y      +KE+I   +  ++             +  +K+     I+ 
Sbjct: 531 KNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEPVVNDLLSELSLNKTVFNNIIDG 590

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDE 623
               D  AD  TD  G  I D +  + E V   E+I DY  REV PH+PDA         
Sbjct: 591 LSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIDDYMKREVLPHIPDAKSFFEEDVT 650

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                 + G EI F R+FY+Y+  R  +++  E   +E  +   ++E+  
Sbjct: 651 LKNPKIKTGAEIPFTRYFYKYEAPRPSEELAQEFLELEDIVNQKVKELFG 700


>gi|325104611|ref|YP_004274265.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
 gi|324973459|gb|ADY52443.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
          Length = 746

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 211/763 (27%), Positives = 350/763 (45%), Gaps = 109/763 (14%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+  T     L  FI+  A+D L   ++ + +  VILP T++RRL+  LEPT+  V + Y
Sbjct: 1   MSINTKDLDPLIRFIYSIADDHLINTYEPSKYKDVILPMTVIRRLDLVLEPTKDRVIDTY 60

Query: 60  LAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +     +L+S +K     +G +FYNTS ++L +L   S N + N  +Y+  FS N + 
Sbjct: 61  NKYKDKLDNLDSLLKSDKQGSGVAFYNTSPFTLKSLLNDSANIKANFINYLDGFSPNVQD 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I   F F + I  L++A  L+ + + F  + I+L  D +P   M  ++E L+RRF    +
Sbjct: 121 IISRFKFRNEIDTLDEAEKLFAVIQKFCSNKIDLSIDALPPLSMGYVFEDLLRRFNEATN 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A    TPR+++ L T ++  P     ++   +   +YDP  G+G  LT++ N + D  
Sbjct: 181 AEAGRHFTPREIIELMTNIIFLPVKDKIQQGSFL---VYDPCAGSGAMLTESKNFMTDDT 237

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K    +  +GQE  P  +A+  + ML++  + D     S   Q G           +
Sbjct: 238 GKIKSKATIHLYGQENTPTIYAISKSDMLLKNEDPDKIVFGSTLSQYGFDN------DLK 291

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPGLPKISDGSMLFLMHL 342
           F + L+NPP+G  W+ DKD + K      + R               +++DG ++F+MH+
Sbjct: 292 FDFMLTNPPYGTSWKDDKDILTKAGGGKIVDRRFIIQKEYDADAATTRVNDGQLMFVMHM 351

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +K++   + G R A V + S LF G AG GESEIR+ ++E D++EA++ALP D+F+ T 
Sbjct: 352 LSKMK-ETDLGSRIASVHNGSALFTGDAGQGESEIRKHIIEKDMLEAVIALPNDMFYNTG 410

Query: 403 IATYLWILSNRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           I T++ I++NRK E R+GKVQLINA +        ++ G KR  +  +  +++ ++Y+  
Sbjct: 411 IPTFILIITNRKPEHRKGKVQLINANNEAFFGKRAKSLGSKRNELKPEHIKKVTELYLEF 470

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL--------- 510
           +    S++ D   FG+ +I V RP R +  LD    A +       +L  L         
Sbjct: 471 KETPHSKIFDNNEFGFAQIIVHRPSRFAIQLDAKHTAEIRFASDNTELRKLIYAECGEQV 530

Query: 511 ---------------------------HQSFWLDILKPMMQQIYPYGW------------ 531
                                       +   L +     +Q   Y              
Sbjct: 531 YSSDAESRQAVENFVLEYFLNEEDSEDEEPAELVVANLNKKQKKIYAQVTDIKSWLRDKQ 590

Query: 532 --------AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD---------PRADPV 574
                   A+ F  E +    A   K K           A   KD          +A+  
Sbjct: 591 LMQEVTAMAKEFGTEPLYDINAFNKKFKEYGKKNNLKYAAKDVKDIRKCITWFDKKAEAE 650

Query: 575 TDVNG-----EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
                      ++ D+NL + EN+P  + IQ +F  EV P  PDA+ +         E  
Sbjct: 651 IKSVSKDGTINYVSDSNLKDTENIPLKQDIQAFFETEVLPFAPDAWWNP--------EET 702

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           ++GYEINFN++FYQY+  R+L +I  ++  +E     LL+E+ 
Sbjct: 703 KIGYEINFNKYFYQYKAPRQLSEIAKDIFEIEKSADKLLKEIV 745


>gi|260891565|ref|ZP_05902828.1| hypothetical protein GCWU000323_02780 [Leptotrichia hofstadii
           F0254]
 gi|260858673|gb|EEX73173.1| type I restriction-modification system specificity subunit
           [Leptotrichia hofstadii F0254]
          Length = 725

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/726 (29%), Positives = 352/726 (48%), Gaps = 80/726 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VI+P T++RR +  +E  ++ + E          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVIIPMTVIRRFDAIIESKKTNIMEVKEMAETQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGSTNTRNNLE----SYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L     R NL+     Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTATGLPFYNTSNFCLKDLKYETNRQNLKRSFEEYLNGFSENIKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNF--SGIELHP------------DTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F  S + L P              + +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSYGEVIRKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADIAMYPVMDKIKDGTY---SIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS D  +
Sbjct: 248 AFAKENSKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKD----KDAVEKEHKNGELGRFGPGLPK----------ISDG 334
           G+ F + LSNPP+GK W+ D        +K+ K     R      K          +SDG
Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDRRFVRNYKEQDDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-ETEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEKDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E+R+GK+QLINA+ + TS+R N GKK    ++D R+ IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEEKRKGKIQLINASGIKTSLRKNMGKKNCEFSEDNRQFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
             Y++ E  ++S++     FGY ++ V RPLR + + D   +  +E ++           
Sbjct: 482 KQYLNFEENEYSKIFSNDEFGYYKVVVERPLRQAVLCDANNIKEIEEELEKIGVLSGAID 541

Query: 503 --------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
                         + ++L           +  +M+    Y    +F K   K  + K +
Sbjct: 542 KKVLAESFIKGTSSSMKELEKSENVNTYLEVLKLMKSDEEYLNYAAFEKAFNKHLKKKDI 601

Query: 549 K-VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
           K    SK      ++    KD  A    D  G  + D+ L + E++P  +   I ++  +
Sbjct: 602 KGASLSKLASTGLLSRMIVKDEEAAIQKDSKGNVVADSELRDTESIPMTFEGGIDEFIKQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++D+           ++GYEINF ++FY+ +    +++I   +K +E Q  
Sbjct: 662 EVLPYHADAFVDE--------SKTQIGYEINFTKYFYKAKELESVEEIVNRIKELERQSD 713

Query: 666 TLLEEM 671
            ++  +
Sbjct: 714 GMMASI 719


>gi|255102541|ref|ZP_05331518.1| type I restriction-modification system specificity subunit
           [Clostridium difficile QCD-63q42]
          Length = 725

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 213/726 (29%), Positives = 351/726 (48%), Gaps = 80/726 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNF--SGIELHP------------DTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F  S + L P              + +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDGTY---SIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D    +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +
Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGP------GLPKISDG 334
           G+ F + LSNPP+GK W+ D           ++K   +    R          +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKSWKMDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-ETELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL
Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++           
Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541

Query: 503 --------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK-ESIKSNEAKT 547
                         + ++L           +   M+    Y   E+F K  +        
Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
                SK      +     +D  A+  TD  G  I D  L + E++P  ++  I ++  +
Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++D+           ++GYEINF ++FY+ +    ++DI   +K +E +  
Sbjct: 662 EVLPYHEDAFVDE--------SKTQIGYEINFTKYFYKAKKLENVEDIVCRIKELEKRSD 713

Query: 666 TLLEEM 671
            ++E +
Sbjct: 714 GMMETV 719


>gi|315638762|ref|ZP_07893935.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481171|gb|EFU71802.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 640

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/695 (30%), Positives = 340/695 (48%), Gaps = 91/695 (13%)

Query: 7   SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
               + +FIW  A+DL    +    +  VILP T+LRRL+  LEPT+  V E Y      
Sbjct: 5   QFQPIISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDI 64

Query: 66  NIDL---ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +    +     +  +FYN S ++L  L     N R N E+Y+  FS N K I   F F
Sbjct: 65  ADEDTLKDLLCDASKSTFYNHSNFTLKKLLNDPKNIRINFENYLDGFSGNIKDIISKFKF 124

Query: 121 SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV------------MSNIYEHLIRRF 166
            + +  L++A +LY + + F    I L    + +              M  ++E LIR+F
Sbjct: 125 RNQLDTLDEAKILYGVIERFCSPKINLSMHDIKNDKGEILHKGLSNLGMGYVFEELIRKF 184

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+++ L T L+  P     ++      ++YD  CG+GG LT++   
Sbjct: 185 NEENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKGAF---SIYDNACGSGGMLTESKEF 241

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D     +    +  +GQE+ PET+A+C A MLI+    D       NI+ GSTLS+D 
Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG----ELGRFGPGLPKISDGSMLFLMHL 342
             G++F + L+NPP+GK WEKD+  +    K G       RF  G+   SDG M+FL+++
Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDARFQAGITSKSDGQMMFLLNM 354

Query: 343 ANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +K++ P    G   R A V + S LFN    SG   IR++++END +EAI+ALPT++F+
Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFNSD--SGMVAIRKYIMENDFLEAIIALPTNMFY 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIY 456
            T I T++WIL+N KT+ ++GKVQLINAT    +T ++   G+K+  +      +I +++
Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATKEAYYTKMKKSLGQKQNEMTKTHIDKITELF 472

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           ++       ++ +   FGY +I + RP  +  +L+      LE            +   +
Sbjct: 473 LTNIENDDCKIYNNDEFGYTKITIERPKSIEILLNDEKFQALE-----------QKDELV 521

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
             LK +      +   E F                         IN    K  +A+    
Sbjct: 522 SKLKELEANPQDFTSKEDF-------------------------INFLDVKLKKAEENLL 556

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
           ++ +   +      E +P  + IQ Y+  EV P+VP+++I          E   +GYEI 
Sbjct: 557 IDSDKTNN-----TEKIPLTQDIQSYYENEVKPYVPNSWIA--------WESKAIGYEIL 603

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FN++FY Y P R L+ ID +L+ +E +   LL+++
Sbjct: 604 FNKYFYTYTPPRSLESIDKDLQDLEQETQDLLKQI 638


>gi|212690634|ref|ZP_03298762.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855]
 gi|237725171|ref|ZP_04555652.1| N-6 DNA methylase [Bacteroides sp. D4]
 gi|212666734|gb|EEB27306.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855]
 gi|229436437|gb|EEO46514.1| N-6 DNA methylase [Bacteroides dorei 5_1_36/D4]
          Length = 658

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 230/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAVREKYLAFG 63
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L   E   +   ++    G
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 64  GSNID-----LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116
            ++ +     +   +  AGY FYNTS  SLS L     +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLKGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            V  GA  F TPRD+V L T + L   +    +   +I ++YDP CGTGG LT   + + 
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQDGKII-SVYDPCCGTGGILTLTKDTIE 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F 
Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F++ L+NPP+G  W+++ D+V  E +  +  RF PGLP  SDG +LF +H+ +K++ 
Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IATYLW
Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409

Query: 409 ILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           I  N+K E  + KV LIN A D +     +N G K  +++D  R +I  IY + E    +
Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +++D   F Y  I V RPLR+ +   KT  A L+       L+ +     LD +      
Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANI---IALDDIDTERTD 526

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581
              + + ES              K+K +   I      FG     A  V     D N + 
Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETAPEVHVIPLDDNSDL 573

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DTNL +YE++P+   IQ+YF  EV    PDA++D+        E  ++G E   ++ F
Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR--------EKDKIGCEFPISKLF 625

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+YQP R ++DI A+++ +E      L  +  +
Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658


>gi|265754308|ref|ZP_06089497.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA]
 gi|263235017|gb|EEZ20572.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA]
          Length = 658

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 230/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAVREKYLAFG 63
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L   E   +   ++    G
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 64  GSNID-----LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116
            ++ +     +   +  AGY FYNTS  SLS L     +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            V  GA  F TPRD+V L T + L   +    +   +I ++YDP CGTGG LT   + + 
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQDGKII-SVYDPCCGTGGILTLTKDTIE 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F 
Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F++ L+NPP+G  W+++ D+V  E +  +  RF PGLP  SDG +LF +H+ +K++ 
Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IATYLW
Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409

Query: 409 ILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           I  N+K E  + KV LIN A D +     +N G K  +++D  R +I  IY + E    +
Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +++D   F Y  I V RPLR+ +   KT  A L+       L+ +     LD +      
Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANI---VALDDIDTERTD 526

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581
              + + ES              K+K +   I      FG     A  V     D N + 
Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVCETAPEVHVIPLDDNSDL 573

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DTNL +YE++P+   IQ+YF  EV    PDA++D+        E  ++G E   ++ F
Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFTPDAWMDR--------EKDKIGCEFPISKLF 625

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+YQP R ++DI A+++ +E      L  +  +
Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658


>gi|237709676|ref|ZP_04540157.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|229456312|gb|EEO62033.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA]
          Length = 658

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 230/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAVREKYLAFG 63
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L   E   +   ++    G
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 64  GSNID-----LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116
            ++ +     +   +  AGY FYNTS  SLS L     +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            V  GA  F TPRD+V L T + L   +    +   +I ++YDP CGTGG LT   + + 
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQDGKII-SVYDPCCGTGGILTLTKDTIE 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F 
Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F++ L+NPP+G  W+++ D+V  E +  +  RF PGLP  SDG +LF +H+ +K++ 
Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IATYLW
Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409

Query: 409 ILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           I  N+K E  + KV LIN A D +     +N G K  +++D  R +I  IY + E    +
Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +++D   F Y  I V RPLR+ +   KT  A L+       L+ +     LD +      
Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQNEALANI---VALDDIDTERTD 526

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581
              + + ES              K+K +   I      FG     A  V     D N + 
Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETASEVHVIPFDDNSDL 573

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DTNL +YE++P+   IQ+YF  EV    PDA++D+        E  ++G E   ++ F
Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR--------EKDKIGCEFPISKLF 625

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+YQP R ++DI A+++ +E      L  +  +
Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658


>gi|259048037|ref|ZP_05738438.1| HsdM protein [Granulicatella adiacens ATCC 49175]
 gi|259035327|gb|EEW36582.1| HsdM protein [Granulicatella adiacens ATCC 49175]
          Length = 725

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 210/726 (28%), Positives = 353/726 (48%), Gaps = 80/726 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVTKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENIKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNF--SGIELHP------------DTVPDRVMSNIYEHLIRRFGS 168
            + ++ +AG+L  + + F  S + L P              + +  M  ++E +IR+F  
Sbjct: 131 QLNKMTEAGILGSVIEKFTSSELNLSPYNEINSKGKIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P      +      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADIAIFPIMNKIMDGTY---SIYDAACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     K    +  +GQE+  ET+A+  A +LI+  ++D     S  +  GST+S D  +
Sbjct: 248 ELAQKDKKNVSIHLYGQEVSAETYAIAKADLLIKGGDTD-----SSQVYYGSTISDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDIRFVRNYKEQDEFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ +P
Sbjct: 363 QLLFLLNNISKMK-NTEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQMP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E R+GK+QLINA+ + T++R N GKK    + D R  IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINASGVKTALRKNMGKKNCEFSKDDREFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y++ E  ++S++     FGY ++ V RPLR + + ++  +  +E ++           
Sbjct: 482 NQYLNFEENEYSKIFSNDEFGYYKVIVERPLRQAVVCNEKNIKEIEDELNKIGVFSGKID 541

Query: 503 --------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
                         + ++L              +M+    Y    +F K+  K  + + +
Sbjct: 542 KKVLEDSFIKRTASSIKELEKTENVEAYLETLKLMKSDERYLDYVAFEKDFNKHLKKRNV 601

Query: 549 K-VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
           K    +K      +     +D  A    D  G  I D NL + E +P  +   I+++  +
Sbjct: 602 KGASLNKLVSTGLLANMIIRDESAVIQKDSKGNVIVDPNLKDTETIPRTFEGGIEEFIKQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++D+           ++GYEINF ++FY+ Q    +++I   +K +E Q  
Sbjct: 662 EVLPYHVDAFVDE--------SKTQIGYEINFTKYFYKAQELESVEEIVDRIKELERQSD 713

Query: 666 TLLEEM 671
            ++  +
Sbjct: 714 GMMASI 719


>gi|269123431|ref|YP_003306008.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112]
 gi|268314757|gb|ACZ01131.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112]
          Length = 725

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/726 (29%), Positives = 351/726 (48%), Gaps = 80/726 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVTKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNF--SGIELHP------------DTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F  S + L P              + +  M  ++E +IR+F  
Sbjct: 131 QVTKMTDAGILGSVIEKFTSSELNLSPYDEKNSSGDIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRD++ L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDLIELMADITMYPIMDKIKNGTY---SIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS D  +
Sbjct: 248 AFAKENDKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDRTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKD----KDAVEKEHKNGELGRFGPGLPK----------ISDG 334
           G+ F + LSNPP+GK W+ D        +K+ K   + R      K          +SDG
Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNIIDRRFVRNYKEQDDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-ETEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E R+GK+QLINA  + T++R N GKK    ++  R  IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINANGIKTALRKNMGKKNCEFSEADREFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   L  +E ++           
Sbjct: 482 NQYLKFEENEYSKIFLNDEFGYYKVVVERPLRQAVLCNAENLKEIEEELKKIRAFSGKID 541

Query: 503 --------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
                         + ++L           +  +M +   Y    +F K+  K  + K +
Sbjct: 542 KKILEDSFIKGTATSIKELEKSENIEAYLEVLKLMNKEEKYLDYVAFEKDFNKHLKKKNI 601

Query: 549 K-VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
           K    SK      +     +D  A    D  G  I D +L + E++P  +   I+++  +
Sbjct: 602 KGASLSKFVSTGLLGNMIIRDESAVIQKDSKGNVIVDPDLRDTESIPMTFEGGIEEFIKK 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++D+           ++GYEINF ++FY+ +    ++DI + +K +E Q  
Sbjct: 662 EVLPYHADAFVDE--------SKTQIGYEINFTKYFYKAKELESVEDIVSRIKELERQSD 713

Query: 666 TLLEEM 671
            ++  +
Sbjct: 714 GMMASI 719


>gi|121612129|ref|YP_001000444.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005387|ref|ZP_02271145.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249524|gb|EAQ72484.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|107770373|gb|ABF83710.1| putative type I restriction-modification system HsdM subunit
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 636

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/696 (30%), Positives = 349/696 (50%), Gaps = 91/696 (13%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP--------------DTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F   +++                 + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+   +   +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWL---IYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339
            D     +F + LSNPP+GK WE D+  +  E K         RF  G+   SDG M+FL
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFL 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +++ +K++     G R A V + S LFN  +G     IR+ ++END +EAIVALPT++F+
Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSDSG--MVAIRKHIIENDYLEAIVALPTNMFY 408

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIY 456
            T I T++WI++N+K E ++GKVQLINAT+   ++ ++   G K+  +  +   +I  ++
Sbjct: 409 NTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFW 515
           +   + K  ++LD   FGY +I + +P  +  + D    A+L + D    KL  L Q+  
Sbjct: 469 LENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLEQLEQN-- 526

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                     +  +   E F+         K L VK  KS     I+             
Sbjct: 527 ----------LQDFKNREEFI---------KFLGVKLKKSEENLIID------------- 554

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                          E +P   +IQ+Y+  EV P+V +++I          E   VGYEI
Sbjct: 555 --------SDKTNNTEKIPLKTNIQNYYDTEVKPYVANSWIA--------WESASVGYEI 598

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FN++FY Y P RKL++I++EL+ +E ++  LL+E+
Sbjct: 599 LFNKYFYIYTPPRKLEEINSELEKLEKEVQDLLKEI 634


>gi|86153233|ref|ZP_01071437.1| putative type I restriction enzyme MjaXP M protein [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842959|gb|EAQ60170.1| putative type I restriction enzyme MjaXP M protein [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 636

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/696 (30%), Positives = 349/696 (50%), Gaps = 91/696 (13%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP--------------DTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F   +++                 + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+   +   +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWL---IYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339
            D     +F + LSNPP+GK WE D+  +  E K         RF  G+   SDG M+FL
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFL 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +++ +K++     G R A V + S LFN  +G     IR+ ++END +EAIVALPT++F+
Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSDSG--MVAIRKHIIENDYLEAIVALPTNMFY 408

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIY 456
            T I T++WI++N+K E ++GKVQLINAT+   ++ ++   G K+  +  +   +I  ++
Sbjct: 409 NTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFW 515
           +   + K  ++LD   FGY +I + +P  +  + D    A+L + D    KL  L Q+  
Sbjct: 469 LENASSKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLEQLEQN-- 526

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                     +  +   E F+         K L VK  KS     I+             
Sbjct: 527 ----------LQDFKNREEFI---------KFLGVKLKKSEENLIID------------- 554

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                          E +P   +IQ+Y+  EV P+V +++I          E   VGYEI
Sbjct: 555 --------SDKTNNTEKIPLKTNIQNYYDTEVKPYVANSWIA--------WESASVGYEI 598

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FN++FY Y P RKL++I++EL+ +E ++  LL+E+
Sbjct: 599 LFNKYFYIYTPPRKLEEINSELEKLEKEVQDLLKEI 634


>gi|296328650|ref|ZP_06871167.1| type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154249|gb|EFG95050.1| type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 725

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 213/725 (29%), Positives = 347/725 (47%), Gaps = 79/725 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 11  NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 71  DIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  
Sbjct: 131 QLTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNGTY---SIYDGACGTFGMATIAEERLQ 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 248 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKD-----KDAVEKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D       + +   KN    RF            LP +SDG
Sbjct: 303 GEHFDFMLSNPPYGKTWKTDLAVLGVGSDKDLKKNIIDKRFVTSYKEQEDFRMLPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINASELKTPLRKNLGKKNCEFSKENRKIIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW--------- 504
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 482 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELENIGFNSKINK 541

Query: 505 ---------------RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
                          ++L           L   M++   Y   E F K   K  +   LK
Sbjct: 542 ANLEGTFVKNSATVVKELEKTDNILAYLELLKDMKKDDKYLDFEEFEKLFNKKLKKYGLK 601

Query: 550 -VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVRE 606
               SK      +     +D  A    D  G  + D  L + E VP  Y   I+++  +E
Sbjct: 602 AASLSKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 661

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++D+           ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 662 VLPYHNDAFVDETK--------TQIGYEINFTKYFYKAKELENVETIVARIKELEKESDG 713

Query: 667 LLEEM 671
           +++ +
Sbjct: 714 MMKNI 718


>gi|288928858|ref|ZP_06422704.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329842|gb|EFC68427.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 682

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/710 (29%), Positives = 326/710 (45%), Gaps = 80/710 (11%)

Query: 7   SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              +L  FIW  A D L   F   D+ K+ILP  +LRRL+  LEPT   V +        
Sbjct: 5   QYNTLFTFIWNIANDVLVQAFNKGDYKKIILPMMVLRRLDILLEPTHQQVLQLKQQLTEQ 64

Query: 66  NIDLES----FVKVAGYSFYNTSEYSLSTL-GSTN---TRNNLESYIASFSDNAKAIFED 117
            +D        ++  G ++ NTS +++ TL G TN    + N   Y+  FS + + I E 
Sbjct: 65  GVDETQQESMLIRRTGLAYCNTSRFTMKTLRGETNPVRLKQNFLEYLDGFSKDVQDIIEK 124

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNIYEHLI 163
           F     +  L   G L +I + F  + I L  D             V +  M  ++E L+
Sbjct: 125 FKLKQQVDNLSDTGRLGRIIEKFTDAEINLGKDPVLDAEGNERLPGVDNHTMGTLFEQLL 184

Query: 164 RRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           R+F    S   A +  TPRD V L   + + P     +       T+YD  CGTGG L+ 
Sbjct: 185 RKFNEANSVTEAGEHFTPRDYVALLADIAVLPVANKLRNGTY---TIYDGACGTGGILSI 241

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ---- 278
           A   +AD     +    +  +GQE++PET+A C A +++  + +      +   ++    
Sbjct: 242 AEQRIADIAKEQRKRIKISLYGQEMQPETYATCKADLMLSSITNSFAYLNAGVRRERFFC 301

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-----DAVEKEHKNGELGRFGPGLPK--- 330
           GST+S D   G +F +C+SNPPFG  W+ D         EK+H          G      
Sbjct: 302 GSTISNDGHPGMKFDFCISNPPFGTPWKTDLQAWGLKDNEKQHITDPRFVLPQGYDPHNG 361

Query: 331 ------ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                 + D  MLFL +  ++++     G R   V + S LF G AG GES +RR ++EN
Sbjct: 362 LRFVPDVGDSQMLFLANNISRMKNDTELGTRIVEVHNGSSLFTGNAGGGESNLRRHIIEN 421

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D +EAI+A+P   F+ T I T++W+++NRK   R GKVQLI+ATD+ T +R N G+K   
Sbjct: 422 DWLEAIIAMPEKDFYNTGIGTFIWVVTNRKEPRRAGKVQLIDATDIKTPLRKNLGEKNCE 481

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            N+  R+QI+ +    E    S++     FGY  IKV RPLR+  +         ++DIT
Sbjct: 482 TNETDRQQIMQLLNRFEETPQSKIFANEEFGYWEIKVDRPLRLRVLP--------QSDIT 533

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
             KL+   Q      ++ +        W           +       K +K+        
Sbjct: 534 AGKLTSKEQEACRAAMQAVPNDTPLNNW-----------DAYAAALGKLTKTVKNKLRAL 582

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFI 621
               DP  +PV         D  L + E VP  Y   I+ +  REV P+ PDAY+ +   
Sbjct: 583 ITVPDPSCEPVA-----GEADRALRDTEQVPLTYPGGIEAFMQREVLPYAPDAYVAE--- 634

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                +  +V YE++F ++FY+    R + DI A++K +E +   LL ++
Sbjct: 635 -----DETKVVYELSFTKYFYKPVELRPIADIKADIKAIETETDGLLADI 679


>gi|57506068|ref|ZP_00371991.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis
           RM3195]
 gi|57015676|gb|EAL52467.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis
           RM3195]
          Length = 639

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/696 (30%), Positives = 339/696 (48%), Gaps = 93/696 (13%)

Query: 7   SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
               + +FIW  A+DL    +    +  VILP T+LRRL+  LEPT+  V E Y      
Sbjct: 5   QFQPIISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDI 64

Query: 66  NIDL---ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +    +     +  +FYN S ++L  L     N R N E+Y+  FS+N K I   F F
Sbjct: 65  ADEDTLKDLLCDASKSTFYNYSNFTLKKLLNDPKNIRINFENYLDGFSENIKDIISKFKF 124

Query: 121 SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV------------MSNIYEHLIRRF 166
            + +  L++A +LY + + F    I L    + D              M  ++E LIR+F
Sbjct: 125 RNQLDTLDEAKILYGVIERFCSPKINLSMHDIKDDKGEILHKGLSNLGMGYVFEELIRKF 184

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+++ L T L+  P     ++      ++YD  CG+GG LT++   
Sbjct: 185 NEENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKGAF---SIYDNACGSGGMLTESKEF 241

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D     +    +  +GQE+ PET+A+C A MLI+    D       NI+ GSTLS+D 
Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG----ELGRFGPGLPKISDGSMLFLMHL 342
             G++F + L+NPP+GK WEKD+  +    K G       RF  G+   SDG M+FL+++
Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDSRFQVGITSKSDGQMMFLLNM 354

Query: 343 ANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +K++ P    G   R A V + S LFN  +G     IR++++END +EAI+ALPT++F+
Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFNSDSG--MVAIRKYIIENDFLEAIIALPTNMFY 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIY 456
            T I T++WIL+N KT+ ++GKVQLINAT+   +T ++   G+K+  +      +I +++
Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATNESYYTKMKKSLGQKQNEMTKTHIEKITELF 472

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFW 515
           ++       ++ D   FGY +I + RP  +  +L+      L + D    KL  L  S  
Sbjct: 473 LTNRENDDCKIYDNAEFGYTKITIERPKSIEILLNDEKFQALKDKDKILAKLQELEISPQ 532

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
             I K                                       FIN    K  +A+   
Sbjct: 533 DFISKE-------------------------------------DFINFLDVKLKKAEENL 555

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
            ++ +   +      E +P  + +Q Y+  EV P++ +A+I          E   VGYEI
Sbjct: 556 LIDSDKTNN-----TEKIPLTQDVQSYYENEVKPYMLNAWIA--------WESKVVGYEI 602

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FN++FY Y   R L+ I+ +L+ +E +   LL E+
Sbjct: 603 LFNKYFYTYTLPRSLEAINKDLQDLEQETQDLLREI 638


>gi|227547714|ref|ZP_03977763.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080212|gb|EEI18175.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 667

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/686 (29%), Positives = 344/686 (50%), Gaps = 48/686 (6%)

Query: 3   EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           + T     L   IW+ A+D L       ++G  I+PFT+LRRLE  LE T+  V +    
Sbjct: 14  KQTAKVNRLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLESTKKDVLDLVHR 73

Query: 62  FGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115
                 D          +    F+NTSE SL  L       +  L+ Y+ +FS N   I+
Sbjct: 74  ENVKGTDPAIVALKIESMFKLRFWNTSELSLERLATSDDALKPGLKQYLNTFSPNILEIW 133

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           + F+F   I  L++   L+ +  +F+ I++  + + D+ M +I+E+L+ R  +  ++ A 
Sbjct: 134 DAFEFDKLIDFLDRNNQLWNVVNHFASIDMSDEALQDQTMGDIFENLMYRSFARKAKDAG 193

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPRD + L T++L   DD   +E  G+IR++YDPT GT G L  A + +       +
Sbjct: 194 EFYTPRDAIRLMTSILFTSDDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIE 252

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +    V  GQEL+  + A+  + +L++  +        + ++ G++L+ D +    F Y 
Sbjct: 253 V----VVAGQELKESSFAMGKSDLLMQGFKD------PEVLKFGNSLTNDQYANDTFDYI 302

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP--NGG 353
           ++NPP+G  W+  ++ V+   + G+  RF  GLP +SDG MLFLMH+A+KL        G
Sbjct: 303 MANPPYGSSWKAFQNEVKALQEGGD-PRFSEGLPAVSDGQMLFLMHIAHKLAPASGDTKG 361

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEND----LIEAIVALPTDLFFRTNIATYLWI 409
           GRAA+V + SPLF G A SG   IR++L+       +++AI+ALP D+F+ T IATY+WI
Sbjct: 362 GRAAVVTNGSPLFTGDAESGPDSIRKYLIGAQGGTEVLDAIIALPNDMFYNTGIATYIWI 421

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKFSRML 468
           L   K   RRG++Q I+AT++   +R    ++R+   +D  R+I  IY   E  + S ++
Sbjct: 422 LDQNKEPRRRGRIQFIDATEICAPMRKNMGQKRVEFTEDNIREITKIYKDFEETERSIIV 481

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 YR + + +    +  +    +A+    ++ +   P H+    ++      +   
Sbjct: 482 TADDLTYRDVPMFKVAHYAVSVTDETVAQA---LSHKSAFPEHEEVIREM------KGRD 532

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           Y      +K S     AK   VK     +   + A   +D  A    D  G  + D    
Sbjct: 533 YNDLPKALKAS-----AKAHGVKTGAPLLKHIMAALAVEDENAPASFDEKGNPVVDAASK 587

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
             E VPYLE + ++  REV P VPD         + D+ + +VG E+   R FY+ + SR
Sbjct: 588 VIERVPYLEDVSEHMEREVLPFVPDM--------QWDESLAKVGTELPLTRLFYKPEESR 639

Query: 649 KLQDIDAELKGVEAQIATLLEEMATE 674
            L+++DA++ G   +I  +  E+ ++
Sbjct: 640 SLEELDADIAGSLDRIYAMFGEVRSD 665


>gi|34762433|ref|ZP_00143433.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887901|gb|EAA24969.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 722

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/725 (28%), Positives = 348/725 (48%), Gaps = 79/725 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 8   NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 67

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 68  NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 127

Query: 123 TIARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  
Sbjct: 128 QLTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 188 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNGTY---SIYDGACGTFGMATIAEERLQ 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 245 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 299

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 300 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 359

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 360 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 418

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 419 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 478

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 479 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 538

Query: 503 -------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
                          ++L           +   M++   Y   E F K   K  +   LK
Sbjct: 539 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 598

Query: 550 -VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVRE 606
            V  +K      +     +D  A    D  G  + D  L + E VP  Y   I+++  +E
Sbjct: 599 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGDIEEFIKKE 658

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++D+           ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 659 VLPYHDDAFVDE--------SKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 710

Query: 667 LLEEM 671
           +++ +
Sbjct: 711 MMKNI 715


>gi|256845105|ref|ZP_05550563.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294785607|ref|ZP_06750895.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
 gi|256718664|gb|EEU32219.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294487321|gb|EFG34683.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
          Length = 725

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/725 (28%), Positives = 348/725 (48%), Gaps = 79/725 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 11  NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 71  NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  
Sbjct: 131 QLIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNGTY---SIYDGACGTFGMATIAEERLQ 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 248 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 482 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 541

Query: 503 -------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
                          ++L           +   M++   Y   E F K   K  +   LK
Sbjct: 542 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 601

Query: 550 -VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVRE 606
            V  +K      +     +D  A    D  G  + D  L + E VP  Y   I+++  +E
Sbjct: 602 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 661

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++D+           ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 662 VLPYHDDAFVDE--------SKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 713

Query: 667 LLEEM 671
           +++ +
Sbjct: 714 MMKNI 718


>gi|148926925|ref|ZP_01810602.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845009|gb|EDK22106.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 636

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/697 (30%), Positives = 344/697 (49%), Gaps = 91/697 (13%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   KQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP--------------DTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F   +++                 + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+   +   +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWL---IYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+        +  + I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKG-------ENPERIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339
            D     +F + LSNPP+GK WE D+  +  E K         RF  G+   SDG M+FL
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGLNSTCNDPRFSVGITSKSDGQMMFL 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +++ +K++     G R A V + S LFN    SG   IR+ ++END +EAIVALPT++F+
Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIY 456
            T I T++WI++N+K+E ++GKVQLIN T+   ++ ++   G K+  +  +   +I  ++
Sbjct: 409 NTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFW 515
           +   + K  ++LD   FGY +I + +P  +  + D    A+L + D    KL  L Q+  
Sbjct: 469 LENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLQELEQN-- 526

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                        +   E F+         K L VK  KS     I+             
Sbjct: 527 ----------PQDFKNREEFI---------KFLGVKLKKSEENLIID------------- 554

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                          E +P   +IQ Y+  EV P+V +++I          E   VGYEI
Sbjct: 555 --------SDKTNNTEKIPLKTNIQGYYDTEVKPYVANSWIA--------WESASVGYEI 598

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            F+++FY Y P RKL++I+ EL+ +E ++  LL E+ 
Sbjct: 599 LFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 635


>gi|237741777|ref|ZP_04572258.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
 gi|229429425|gb|EEO39637.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
          Length = 722

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 209/725 (28%), Positives = 348/725 (48%), Gaps = 79/725 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 8   NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 67

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 68  NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 127

Query: 123 TIARLEKAGLLYKICKNFSGIELH--------------PDTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                 + +  M  ++E +IR+F  
Sbjct: 128 QLIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 188 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNGTY---SIYDGACGTFGMATIAEERLQ 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 245 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 299

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 300 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 359

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 360 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 418

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 419 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 478

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 479 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 538

Query: 503 -------------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
                          ++L           +   M++   Y   E F K   K  +   LK
Sbjct: 539 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 598

Query: 550 -VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVRE 606
            V  +K      +     +D  A    D  G  + D  L + E VP  Y   I+++  +E
Sbjct: 599 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 658

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++D+           ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 659 VLPYHDDAFVDE--------SKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 710

Query: 667 LLEEM 671
           +++ +
Sbjct: 711 MMKNI 715


>gi|124515148|gb|EAY56659.1| putative N-6 DNA methylase [Leptospirillum rubarum]
          Length = 581

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 237/552 (42%), Positives = 336/552 (60%), Gaps = 24/552 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + +  A F+W  A+ L GD+K  D+GKVILPFT+LRRL+C LEPT++ V ++Y +   S 
Sbjct: 4   NFSEKAAFLWSVADLLRGDYKQADYGKVILPFTVLRRLDCVLEPTKNQVLQEYESRKNSG 63

Query: 67  I-DLESFV-KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           I DL  F+ KV+G  FY+ S ++ S L     + R NLESY+  FS+NA+ +FE F F  
Sbjct: 64  IADLSPFLLKVSGQKFYSVSRFTFSKLLDDPPHIRQNLESYLGDFSENARDVFERFRFGE 123

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I+ L+   LL+ I + F+ I+LHPD VP+  M  I+E LIRRF    +E A +  TPR+
Sbjct: 124 QISNLDSKNLLFMIVQKFATIDLHPDQVPNEEMGLIFEELIRRFAETSNETAGEHFTPRE 183

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   +L   DD    + PG++R+LYDP  GTGG L+ A +++ +     +    L  
Sbjct: 184 VIRLMVNILFVADDEALSK-PGVVRSLYDPAAGTGGMLSVAEDYLREHNPDMR----LTV 238

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL  E++++C A M+I+  + +           G++ ++D F   +F Y LSNPPFG
Sbjct: 239 FGQELNDESYSICKADMMIKGQDPNRIVS-------GNSFTQDGFPHDKFDYMLSNPPFG 291

Query: 303 KKWEKDKDAVEKEH--KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             W+K +D V+ EH  K    GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  IVL
Sbjct: 292 VDWKKIQDVVKNEHERKGYGGGRFGPGLPRVSDGSLLFLLHLLSKMRPPGEGGSRIGIVL 351

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRRW+LEND +EAI+A+PTDLF+ T IATY+WILSNRK+ ER  
Sbjct: 352 NGSPLFTGDAGSGESEIRRWILENDFLEAIIAMPTDLFYNTGIATYIWILSNRKSPERTN 411

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLINA DL+  +R   G KR  + D+  R+I  IY   EN   S++ D + FG+R+I 
Sbjct: 412 KVQLINAVDLYAKMRKSLGNKRNYLTDENIREITRIYGEFENKGISKIFDTQDFGFRKIT 471

Query: 480 VLR-PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           V R P     +  K G    + D+   +  PL +    DI +   +++ P+       +E
Sbjct: 472 VDRPPASGKTVKVKKGQKPYDPDLRDTENVPLKE----DINEYFEREVKPHVPEAWINEE 527

Query: 539 SIKSNEAKTLKV 550
              + + K  KV
Sbjct: 528 IRDAKDGKVGKV 539



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 70/103 (67%)

Query: 570 RADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
               V    G+   D +L + ENVP  E I +YF REV PHVP+A+I++   D KD ++G
Sbjct: 478 SGKTVKVKKGQKPYDPDLRDTENVPLKEDINEYFEREVKPHVPEAWINEEIRDAKDGKVG 537

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +VGYEINFNR+FY Y+P R L++I A+LK VE++I  +L+++ 
Sbjct: 538 KVGYEINFNRYFYVYKPPRPLEEIKADLKAVESRILEILKQVT 580


>gi|332885122|gb|EGK05374.1| hypothetical protein HMPREF9456_02873 [Dysgonomonas mossii DSM
           22836]
          Length = 600

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 222/670 (33%), Positives = 350/670 (52%), Gaps = 104/670 (15%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--GSNIDL 69
           A+ IW+ A+ L GD+K +D+GKVILP T+LRRL+C LEPT+  V +          N   
Sbjct: 8   ADLIWRVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLPKVSSLKDNAKD 67

Query: 70  ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            +  K+AG++F+N S+++   L     N   NL  YI  FS +A+ I E F+F   I R+
Sbjct: 68  LALNKIAGFNFHNRSQFNFQKLVADPNNIGANLRQYINGFSTSAREIIEYFNFDDQIDRM 127

Query: 128 EKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +       +++ K F  I+L    +    M  ++E LIR+F  + +E A +  TPR+++ 
Sbjct: 128 DDPRTDILFRVVKAFQAIDLS--DMDSMEMGYVFEELIRKFAEQSNETAGEHFTPREIIR 185

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   D  +  +  G+++T+YDP CGTGG L+ A  +V +     +    L   GQ
Sbjct: 186 LMVNLLFIEDREMLTQK-GIVKTMYDPACGTGGMLSIAEQYVKELNPDAE----LKVFGQ 240

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ PE++A+C + MLI+            NI+ G+T + D    ++F Y LSNPPFG  W
Sbjct: 241 EINPESYAICKSDMLIKGQN-------PGNIKFGNTFTVDGLDDEKFDYMLSNPPFGVDW 293

Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  ++ E +N G  GRFG GLP+I+DGS+LFL H+ +K++     G R  IV + SP
Sbjct: 294 KKAEKIIKTEAENKGMSGRFGAGLPRINDGSLLFLQHMVSKMK---GSGTRIGIVFNGSP 350

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A SGES IR+W++END +EA+VA+P  LF+ T I+TY+WI++N K++ER+GK+QL
Sbjct: 351 LFTGAAESGESNIRKWIIENDWLEAVVAMPDQLFYNTGISTYVWIVTNHKSKERKGKIQL 410

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           INAT   T      K+ ++                E  +F R +D R+ G +R  +    
Sbjct: 411 INAT--GTKDEELLKEGKL----------------EFNRFWRKMD-RSLGNKRKAIAENG 451

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
               I   T +     +  + K+ P                   +G+    V++ ++   
Sbjct: 452 NTKGIGFITQIYGNFQENEFCKILP----------------NEYFGYWRVTVEQPLR--- 492

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--------- 595
                                        V D N +  P+T+L  YEN+P+         
Sbjct: 493 ------------------------ENGKIVKDRNKQPKPNTSLRNYENIPFLKKDANGKL 528

Query: 596 -LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
             ++I++YF  EV PH+P+A+ID            ++GYE+NF ++FY+++P R L DI 
Sbjct: 529 IPQTIEEYFDAEVKPHLPEAWIDH--------SKTKIGYEVNFTKYFYEFKPLRALADIR 580

Query: 655 AELKGVEAQI 664
           A++  +E +I
Sbjct: 581 ADILALEEEI 590


>gi|331084241|ref|ZP_08333346.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401776|gb|EGG81353.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 684

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/707 (30%), Positives = 330/707 (46%), Gaps = 64/707 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +  SL +FIW  A D   D +   D+ K+ILP  ++RR +  LEP   AV +    F
Sbjct: 2   NQSTYNSLKSFIWGIANDCLVDVYDVGDYRKIILPMFVIRRFDAVLEPKHEAVMKAKEQF 61

Query: 63  GGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFE 116
             + I     +   VA  +F N S+++L+ L S       + +   Y+  FS+N + I  
Sbjct: 62  TKAGITELDAALASVAEQAFVNKSDFTLTDLKSRTNQQQLKKDFIEYLDGFSENVQVIIN 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHP------------DTVPDRVMSNIYEHL 162
            F   + I RL +   L  + + F    I L              + + +  M  ++E +
Sbjct: 122 KFHIRNEIGRLSEQDRLGLLIEKFVDPRINLSNRPVLNEDGSVKIEALDNHTMGTLFEEV 181

Query: 163 IRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           IR F  E +   A    TPRD+V L   L   P     + +      +YD  CGTGG LT
Sbjct: 182 IRMFNEETNVTDAGRHFTPRDIVELIADLAFIPVQDKIQSTTY---RIYDGACGTGGMLT 238

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               H+            +  +GQE   ET+A+  A ML++          S  I+ GST
Sbjct: 239 VGDEHIKKLAKEQGKKVSIHLYGQENADETYAIARADMLVKG-----EGKESDQIRFGST 293

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKIS-------- 332
           +S D F  + F + LSNPPFG  W+ D  A     K+     RF       S        
Sbjct: 294 ISDDKFAKEEFDFMLSNPPFGTPWKTDLKAWGIGKKDEISDSRFIINYDDNSEYSLIPDI 353

Query: 333 -DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            D  MLFL +  +K++     G R   V + S LF G+AGSG S +RR++ E DL EAI+
Sbjct: 354 GDPQMLFLANNISKMKTTTELGSRIIEVHNGSSLFTGKAGSGPSNLRRYIFEQDLCEAII 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           A+P ++F+ T I TYLW+L+N+K E+R+GKVQLI+AT +   +R N G K   +    R 
Sbjct: 414 AIPENMFYNTGIGTYLWVLTNKKDEKRKGKVQLIDATSMKEPLRKNLGDKNCEMTQKMRE 473

Query: 451 QILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           +++++Y++ +  + ++S+      FG+ +++V RPLR+   +    L          K S
Sbjct: 474 KVMELYLAFDKADSEYSKAFLNEEFGFYQVEVNRPLRLRVNVSDEALEEF-------KNS 526

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                F+  ++    ++        SF+ +  KS  AK   +K +K    A    F   D
Sbjct: 527 VEDDEFYDFLMTN--EKDTESTNFNSFIGKLEKS--AKKAGLKWTKKRENAIRKYFTTTD 582

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
             AD V D  G   PD NL + E VP  Y   I  +F  EV P+V DA+I++        
Sbjct: 583 ENADVVLDKKGNIEPDNNLKDTEQVPLLYDGGITGFFENEVKPYVEDAWINE-------- 634

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +   +GYE++F ++FY+    R L DI A+++ +E     LL  +  
Sbjct: 635 DSAVIGYELSFTKYFYKPVQLRDLSDIIADIRAIEQSTDGLLASIIG 681


>gi|325297665|ref|YP_004257582.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
 gi|324317218|gb|ADY35109.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
          Length = 772

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/788 (27%), Positives = 355/788 (45%), Gaps = 146/788 (18%)

Query: 7   SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S + +   IW  A+D L   F    +  VILP  +LRRL+  LEPT+  V E+    G  
Sbjct: 4   SYSQIVALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKEDVEEEIKESGVD 63

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDFD 119
           NID      +   S++NTS+++L+ L S  + NN         Y+  +S+N + +  +F+
Sbjct: 64  NIDEGVLKDITRLSYFNTSKWTLNRLKSQASDNNDILYDNFVEYLNGYSENVRDVLRNFE 123

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIRRF 166
           + +   +L     L  I +  +   I L      D             M  ++E L+RRF
Sbjct: 124 YYTKARKLADNDRLLSIIERITDPRINLTDKNTIDPDGLPLPALTNVGMGTVFEELLRRF 183

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRD + L   L+ +P     KE+   I TLYDP CG+GG LT++  +
Sbjct: 184 NEENNEEAGEHFTPRDAISLLAHLVFEP----VKENLPKIITLYDPACGSGGMLTESREY 239

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D G        +   G E+ PET+A+C + ++I+ ++          I  G+T++ + 
Sbjct: 240 LLDLGVR---SAAIQLSGTEINPETYAICKSDLIIKGVDPS-------GIHWGNTITDNS 289

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISD 333
           F+ K F Y ++NPP+GK W++DK  +  E K     RF                 P+ SD
Sbjct: 290 FSDKSFGYMITNPPYGKSWKEDKKKIYHE-KMLLDHRFELTLTNYVGEEEVLDSTPRTSD 348

Query: 334 GSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           G +LFL+   +K++       G R A + + S LF G AGSGES IRR+L+E DL+EAI+
Sbjct: 349 GQLLFLLEEVDKMKPLEFQPQGSRIASIHNGSSLFTGDAGSGESNIRRYLIEKDLVEAII 408

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++F+ T I+TY+W+L+N+K + R+GKVQLI+A+  +  +R     R    +  R  
Sbjct: 409 QLPNNIFYNTGISTYVWMLTNKKKDNRKGKVQLIDASQAFEKLRKNQGSRNCTIEPYRTD 468

Query: 452 ILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL------ 498
           IL +Y      +        S++ D   F Y  + + RPLR+    +   +  +      
Sbjct: 469 ILRVYTDFVEQEANEELKVGSKIFDDDDFRYYNVTIERPLRLRCQFNSLKIDEMLYDSSD 528

Query: 499 ---------------------------------EADITWRKLSPL-------HQSFWLDI 518
                                            +  IT +KL+ L        +   +  
Sbjct: 529 IEVSKWLYNTYKDRVFSGLDSEIPTIKEYLNDQDIKITDKKLNKLISAKAWKDRQRLMIA 588

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD-- 576
            K +M+ +    + +  +  +  +  AK LK++ S + +     A    D +A PV    
Sbjct: 589 AKVLMKDMGTDVYMDYNLFSAKVNATAKVLKLETSAAELKTICRAMSVTDSKATPVVKKE 648

Query: 577 ------------------------------VNG---EWIPDTNLTEYENVPYLESIQDYF 603
                                           G   E+  D+ L + E +P  E I DYF
Sbjct: 649 HKVNSKDVVMLLETYGVPEEKLSDYGYHSVKKGMYVEFESDSELRDSEKIPVKEDIYDYF 708

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV P+V DA+I+            ++G EI+FN++FY+  P R L++ + ++  ++ Q
Sbjct: 709 QREVRPYVEDAWINL--------PQTKIGCEISFNKYFYKPTPLRSLEENERDIIALDEQ 760

Query: 664 IATLLEEM 671
               ++ +
Sbjct: 761 SQGFIKSL 768


>gi|311741898|ref|ZP_07715709.1| type I restriction-modification system DNA-methyltransferase
           [Aeromicrobium marinum DSM 15272]
 gi|311314904|gb|EFQ84810.1| type I restriction-modification system DNA-methyltransferase
           [Aeromicrobium marinum DSM 15272]
          Length = 581

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 224/563 (39%), Positives = 317/563 (56%), Gaps = 22/563 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L NFIW  A+ L G +K   +G VILP T+LRRL+C +EPTR  VR            
Sbjct: 2   SNLGNFIWSIADQLRGVYKPHQYGNVILPMTILRRLDCIMEPTRDEVRALTAKHDNPGAL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                +  G  F+NTS++  ++L       R NL  Y+  FS N   +FE F F + IA 
Sbjct: 62  ALQVKRATGLGFHNTSQFDFASLLADPDGLRANLVDYLTKFSANI-DVFERFKFENEIAT 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   LY + + F+ ++LHPD VP+  M +++E LIR+F    +E A +  TPRD + L
Sbjct: 121 LDEKNRLYLVVEKFAEVDLHPDVVPNAAMGDLFEELIRKFAEASNEEAGEHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   +     E PG +R++YDPT GTGG L+ A   + +  S  +    L  +GQE
Sbjct: 181 MVDLLFAEEQEGLLE-PGTVRSIYDPTAGTGGMLSVAEERLLERNSDAR----LTLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  +++A+C + M+ +  +S        NI+ G TLS DLF G+ F +C+SNPP+G  W+
Sbjct: 236 LNDQSYAICKSDMIAKGQDSS-------NIRLGDTLSDDLFAGRTFDFCMSNPPYGVDWK 288

Query: 307 KDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             + +V++E  ++GE GRFGPGLP +SDG MLFL HLA+K+     GGGR  IVL+ SPL
Sbjct: 289 AAEKSVKEERARDGEHGRFGPGLPSVSDGQMLFLTHLAHKMRPEHEGGGRVGIVLNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I+TY+WIL N K  ERRGKVQLI
Sbjct: 349 FNGAAGSGPSEIRRWLLETDLVEAIVALPTDMFFNTGISTYIWILDNTKRAERRGKVQLI 408

Query: 426 NATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLR 482
           +A+ + T +R   G KR+ I+   R ++L +Y + +  +   S++ D   FGY  I V R
Sbjct: 409 DASGMGTKMRKSLGSKRKEIDTTSRERVLALYDAFDEADPDLSKVFDTTEFGYWTITVER 468

Query: 483 PL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           PL   +   + D+ G+ + ++     +  P +              I  Y  AE      
Sbjct: 469 PLLDDKGDPVTDRKGIRKPDSKKRDTENIPFNYGGNTTGDHGRDATIKAYFDAEVLPHVP 528

Query: 540 IKSNEAKTLKVKASKSFIVAFIN 562
               + K  KV     F   F  
Sbjct: 529 DAWIDHKKTKVGYEIPFTRHFYT 551



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 45/247 (18%)

Query: 443 IINDDQRRQIL----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           ++  D    I+    D++ +     +  +LD      RR KV        ++D +G+   
Sbjct: 364 LLETDLVEAIVALPTDMFFNTGISTYIWILDNTKRAERRGKVQ-------LIDASGMGT- 415

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
                 + L    +       + ++     +  A+  + +   + E     +   +  + 
Sbjct: 416 ---KMRKSLGSKRKEIDTTSRERVLALYDAFDEADPDLSKVFDTTEFGYWTITVERPLL- 471

Query: 559 AFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVRE 606
                    D + DPVTD  G   PD+   + EN+P+              +I+ YF  E
Sbjct: 472 ---------DDKGDPVTDRKGIRKPDSKKRDTENIPFNYGGNTTGDHGRDATIKAYFDAE 522

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V PHVPDA+ID         +  +VGYEI F R FY Y P R L +IDA+L+   A+I  
Sbjct: 523 VLPHVPDAWIDH--------KKTKVGYEIPFTRHFYTYVPPRPLAEIDADLEKQVAKILE 574

Query: 667 LLEEMAT 673
           LL E+  
Sbjct: 575 LLREVEG 581


>gi|239828720|ref|YP_002951343.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239809013|gb|ACS26077.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 592

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 207/676 (30%), Positives = 326/676 (48%), Gaps = 102/676 (15%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +    AN IW  A+ L G +K   +G+VILP T+++R    L PTR  V E Y   
Sbjct: 9   QTGINIQEKANLIWSIADSLRGLYKPHQYGEVILPMTVIKRFHDTLLPTREKVLETYEKV 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        +GY FYN S+++  +L     N   N  +Y+  FS+N + + ++FDF
Sbjct: 69  KHLEVKEGFLQSASGYVFYNVSKFTFDSLLADPDNIEENFLAYLHGFSENVQDVLKNFDF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              + RL     L+ + + F+  +  L PD +    M  I+E LI++F     E A    
Sbjct: 129 EREVRRLADNDKLFYVIQEFNSEKAYLGPDKITSTDMGYIFEELIKKFSESYDEEAGSHF 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T RD+++L T LL++ +  +     G+ +T+YD T GT   L+     +       ++  
Sbjct: 189 TSRDIIYLMTDLLIEEEKDVLMNE-GIAKTVYDQTMGTSQMLSAMEERLKALDPEAEV-- 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQE+  +T+A+  A  +IR    D       N++ G+TL++D F G  F YC+SN
Sbjct: 246 --TVFGQEINEQTYAIAKADTMIRGGNPD-------NMRLGNTLTEDQFEGYTFDYCISN 296

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG  W+ + + V+ EH+ GE GRFG GLPK +DG +LFL++  +KL+      GR AI
Sbjct: 297 PPFGVDWKSEYEKVKAEHEKGENGRFGVGLPKKNDGQLLFLLNGLSKLK----DTGRMAI 352

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + S LF+G AGSGESEIRR+++END +EAIV LP DLF+ T I TY+WIL+  K + R
Sbjct: 353 IHNGSALFSGDAGSGESEIRRYVIENDWLEAIVQLPADLFYNTGITTYIWILTKNKPKHR 412

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
            GKVQLI+A+++                         Y  R           +  G +R+
Sbjct: 413 IGKVQLIDASNM-------------------------YEKRR----------KNIGNKRV 437

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            +  P R   +              +R+            ++  +     +G+ +  V+ 
Sbjct: 438 DITEPCREMIV------------KAYREFLNKEYRMGERTVESKIFDNEDFGYYKVTVET 485

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
                                      + D   + V   NG+ +PD +  + E +P  E 
Sbjct: 486 P--------------------------QYDEDGNIVMK-NGKPVPDKDKRDTEEIPLKED 518

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           IQ+YF RE+ P  PDA+ID+           ++GYEI F R FY++QP  K +DI   ++
Sbjct: 519 IQEYFEREIKPFNPDAWIDENK--------TKIGYEIPFTRLFYKFQPPEKSEDIAVRIR 570

Query: 659 GVEAQIATLLEEMATE 674
            +E +I    E ++ E
Sbjct: 571 KLEEEIVKSFESLSGE 586


>gi|295394612|ref|ZP_06804831.1| type I restriction-modification system methyltransferase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972505|gb|EFG48361.1| type I restriction-modification system methyltransferase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 666

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 199/686 (29%), Positives = 343/686 (50%), Gaps = 48/686 (6%)

Query: 3   EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           + T    SL   IW+ A+D L       ++G  I+PFT+LRRLE  L PT+ AV      
Sbjct: 14  KQTAKVNSLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLAPTKQAVLNLVER 73

Query: 62  FGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF 115
                 D               F+NTSE SL  L +     +  L+ Y+ +FS N   I+
Sbjct: 74  ENAQGTDPAIVGLKIENKFKLRFWNTSELSLERLANSDDALKPGLKQYLNTFSPNILEIW 133

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             F+F   I  L++   L+ + ++F+ I++  + + D+ M +I+E+L+ R  +   + A 
Sbjct: 134 NAFEFDKLIDLLDRNNQLWNVVQHFASIDMSDEALQDQTMGDIFENLMYRSFARKGKDAG 193

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPRD + L T++L   +D   +E  G+IR++YDPT GT G L  A + +       +
Sbjct: 194 EFYTPRDAIRLMTSILFTSNDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIE 252

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +    V  GQEL+  + A+  + +L++  +        + ++ G++L  D + G  F Y 
Sbjct: 253 V----VVAGQELKESSFAMGKSDLLMQGFKD------PEVLKFGNSLINDQYAGDTFDYI 302

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGG 353
           ++NPP+G  W+  +  V+K  + G+  RF  GLP +SDG MLFLMH+A+KL        G
Sbjct: 303 MANPPYGSSWKAFQKDVKKLQEQGD-PRFSEGLPAVSDGQMLFLMHIAHKLAPADGTTKG 361

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEND----LIEAIVALPTDLFFRTNIATYLWI 409
           GRAA+V + SPLF G   SG   IR++L+       +++AI+ALP D+F+ T+IATY+WI
Sbjct: 362 GRAAVVTNGSPLFTGDPESGPDGIRKYLMGAQGGSEVLDAIIALPNDMFYNTDIATYIWI 421

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKFSRML 468
           L   K   RRG++QLI+AT +   +R    K+R+ +++D  R+I  +Y   E  + S ++
Sbjct: 422 LDQNKEPRRRGRIQLIDATGISAPMRKNMGKKRVELSEDNIREITKLYKDFEQNERSIIV 481

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 YR + + +    +  + +  +A     ++ +     H++   ++      ++  
Sbjct: 482 TADDLTYRDVPMFKVAHYAVNVTEETVAEA---MSHKSALAEHEAVIREMKGREYNELP- 537

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
                     +     AK   VK     +   + A   +D  A    D  G  I D +  
Sbjct: 538 ----------AALKVSAKAHGVKMGAPLLRHIVKALAVEDQNAPASLDEKGNPIVDASSK 587

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
             E +PYL+ + ++  RE+ P VPD         + D+ + +VG E+   R FY+ Q +R
Sbjct: 588 VIERIPYLDDVSEHMEREILPFVPDM--------QWDESLAKVGTELPLTRLFYKPQETR 639

Query: 649 KLQDIDAELKGVEAQIATLLEEMATE 674
            L+++DA++     +I  +  ++  +
Sbjct: 640 SLEELDADIAASLDRIYAMFRKVRED 665


>gi|290512140|ref|ZP_06551507.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55]
 gi|289775135|gb|EFD83136.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55]
          Length = 795

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 233/612 (38%), Positives = 335/612 (54%), Gaps = 66/612 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 10  MTN--TNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 67

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  ++     ++ +  SF+NTS+  L  +G  + + NLESY+ +FS +A+ IFE
Sbjct: 68  ELKTSPLPEDAKEKFLLRASTLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFE 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 128 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    + PG+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 188 HFTPRDIVRLTTSLVFMEDDEALTQ-PGIIRTIYDPTAGTGGFLSSGMEYVHELNPN--- 243

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 244 -AVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLPLDQFDYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 296 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGT 355

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 356 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 415

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK----- 463
           LSN+K  ER+GKVQLI+ T+L   +R   G KR ++ DD  + I   +   E        
Sbjct: 416 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGDDDIKLITKTFGDFEVVDATTLE 475

Query: 464 -----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 476 ELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 535

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           +A L         +P+ + +     +   +    +   E+  +  IK+  A     +  +
Sbjct: 536 IATLRFAPKPFN-APMERLYDEFASQWHEENYGDFSELEAEARAIIKAEFA-----ELKE 589

Query: 555 SFIVAFINAFGR 566
             I   +++   
Sbjct: 590 KQIKDLLDSKLW 601



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 86/194 (44%), Gaps = 26/194 (13%)

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           ++ R L    Q     +      +         F  +       KT  VK        FI
Sbjct: 602 LSQRGLMEKAQQIQTALGTQAGGKTLVSNDFNQF--QLPLKGAIKTAGVKLDAKENKQFI 659

Query: 562 NAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES----- 598
           +A   K+P A+PV                   G   E+  D  L + ENVP   +     
Sbjct: 660 DAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPTVSTSD 719

Query: 599 -IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I++YF  EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L +IDA+L
Sbjct: 720 LIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLSEIDADL 779

Query: 658 KGVEAQIATLLEEM 671
             V A+I  LL+E+
Sbjct: 780 DAVSAEIMKLLQEV 793


>gi|330992547|ref|ZP_08316495.1| Putative type I restriction enzyme MjaXP M protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760746|gb|EGG77242.1| Putative type I restriction enzyme MjaXP M protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 528

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/516 (41%), Positives = 299/516 (57%), Gaps = 27/516 (5%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T   ASL++ IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   + 
Sbjct: 3   TTPRTASLSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWE 62

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLS--TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              ID   F  KVAG  F NTS+++L        N   NL +YI +FS  A+ IF+ F F
Sbjct: 63  SKGIDPMPFMEKVAGLKFVNTSDFTLKGVLGDPDNLTQNLSAYINAFSPTARDIFDHFRF 122

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    RL KA LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TP
Sbjct: 123 TEQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEHFTP 182

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   L+   DD+L       +RT+YDPT GTGG L+ A   + D     +    L
Sbjct: 183 REVIRLMVNLIFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDAR----L 238

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLIR  +         NI+ G+TLS D     +F Y LSNPP
Sbjct: 239 TMFGQELNPESYAICKADMLIRNQDVS-------NIRLGNTLSDDELADHKFDYMLSNPP 291

Query: 301 FGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG +W+K + AV  EH+  G  GRFGPGLP+ISDGSMLFL+HL +K+    +GG R  IV
Sbjct: 292 FGVEWKKVEKAVRAEHEKLGYDGRFGPGLPRISDGSMLFLLHLVHKMRPVKDGGARFGIV 351

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK   R+
Sbjct: 352 LNGSPLFTGAAGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPTNRK 411

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GKVQLI+A+  W  +R   G KR+ + +D    +  ++   +  + + ++       R +
Sbjct: 412 GKVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATIIAADGTQTREV 471

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            +           K       ++    +L+PL + F
Sbjct: 472 VM-----------KGAEPPEASEGGKVRLAPLSRIF 496


>gi|86130624|ref|ZP_01049224.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819299|gb|EAQ40458.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 809

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 226/816 (27%), Positives = 357/816 (43%), Gaps = 160/816 (19%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
              S + L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+  V ++    
Sbjct: 2   NNSSHSKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKKEVMDEVHFQ 61

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAK 112
            +  G + ++ E     +GY FYNTS+++L  L  T + N      N E Y+  FS N K
Sbjct: 62  KVEAGFTELENEGLKAASGYVFYNTSKWTLQLLKDTASNNQSILLANFEDYLLGFSPNVK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIY 159
            I + F+  S I  +    +L  + + F+   I L P    D             M  ++
Sbjct: 122 EIVDKFNLVSQIKHMAGKDVLLDVLEKFTSSHINLTPFEKEDPEGRKLPALSNLGMGYVF 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIR+F  E +E A +  TPR+V+ L T ++ +P     K+    + T+YDP CG+GG 
Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIELMTHIIFEP----IKDQLPPVMTIYDPACGSGGM 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT++ N + D     K    +  +G+E+  ET+A+C + M+I+        +  +NI+ G
Sbjct: 238 LTESQNFIKDPEGAIKATGDVYLYGKEINDETYAICKSDMMIKG-------NSPENIRVG 290

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------P 326
           STLS D FTG  F + LSNPP+GK W  ++  + K+ K+    RF               
Sbjct: 291 STLSTDEFTGTSFDFMLSNPPYGKSWSSEQKYI-KDGKDVIDPRFKIQLADYWGTVEDVD 349

Query: 327 GLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            +P+ SDG +LFLM + +K++       G R A V + S LF G AG GES IRR+++EN
Sbjct: 350 AVPRSSDGQLLFLMEMVSKMKTLEQSPAGTRIASVHNGSSLFTGDAGGGESNIRRYIIEN 409

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D++EAI+ LP +LF+ T I TY+W+LSN KT  R+GKVQLI+A+DL+  +R N G K   
Sbjct: 410 DMLEAIIQLPNNLFYNTGITTYIWVLSNNKTATRKGKVQLIDASDLYKKLRKNLGNKNCE 469

Query: 444 INDDQRRQILDIY-------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
                  +I ++Y        + E    S + D   FGY +  V RP R+        + 
Sbjct: 470 FTKKHIDKITEVYMSALSRKRTEELPLESLVFDNSDFGYYKATVERPKRLKSQCTDARIE 529

Query: 497 RLEADITWRKL---------------SPLHQSFWLDIL---------------------- 519
            L  D   ++                   HQ   L+ +                      
Sbjct: 530 TLRYDRVLQEAMQYAYETYGDSVYRDVKKHQKELLEWVEKEELNLSSAHKTKLCKQDTWD 589

Query: 520 ---------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                    K +        + +  V +    +E K  K+  + S   A +NA    D  
Sbjct: 590 KHLRQLTTAKKLQNIFGDTLYTDYNVFKKEVDDELKAQKIAIAASDKKAILNALSWYDAA 649

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYLES---------IQDYFVREVSPHVP--------- 612
           A  V     +   D      E++   E+               R VS  VP         
Sbjct: 650 AAKVIKKVVKLTGDKLTQLLEHLNCEEADLPDFGYYPCHAERSRSVSNDVPTSLSLRAPS 709

Query: 613 ---------DAYIDKIFIDEKDKE----------------------------IGRVGYEI 635
                    +  + +   D +D E                              ++GYEI
Sbjct: 710 RSERSLKKGEYVVYETESDLRDTENVPLKDNIHSYFKREVHPHVAEAWINLDATKIGYEI 769

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +FN++FY++ P R ++++ A++  +E Q   L+ ++
Sbjct: 770 SFNKYFYKHTPLRNIEEVTADILDLEKQSDGLIADI 805


>gi|148263546|ref|YP_001230252.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146397046|gb|ABQ25679.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 777

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 238/603 (39%), Positives = 328/603 (54%), Gaps = 53/603 (8%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  K+    
Sbjct: 1   MTINFSQTAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEQSKPAVLAKHAEVS 60

Query: 64  GSNIDLESFVKV----AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             N+  E++ K+       SF+N S   LS LG +  ++NLE+YI  FS +A+ IFE F 
Sbjct: 61  KMNLPEEAYEKMVLRATDESFFNISPMDLSKLGESGIKDNLENYIQCFSKDAREIFEYFK 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+  I +L  A LLYK+ + F+  +L P  + +  M  ++E LIRRF    +E A +  T
Sbjct: 121 FAEFIGQLNDANLLYKVVQKFANTDLSPQAISNYEMGLVFEELIRRFAESSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V L T+L+   DD       G+IRT+YDPT GTGGFL+  M +V +         +
Sbjct: 181 PRDIVRLTTSLVFMEDDEALTRD-GIIRTIYDPTAGTGGFLSSGMEYVYELNP----KAV 235

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y LSNP
Sbjct: 236 MRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLYADKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  +  EH   G  GRFGPGLP++SDGS+LFLMHL +KL    +GGGR  I
Sbjct: 289 PFGVDWKKVETEINDEHTLKGFAGRFGPGLPRVSDGSLLFLMHLISKLRDTKDGGGRIGI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W+LSN+K  ER
Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVLSNKKDPER 408

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE----------------- 460
           +GKVQLIN  +L   +R   G KR ++ +D    I   +   E                 
Sbjct: 409 KGKVQLINGVNLCAKMRKSLGSKRNVMGEDDIATITRAFGRFERVDTLTLDKPDEVKSNR 468

Query: 461 -----NGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                N K        S++     FGYRRI V RPLR+S       L  L        + 
Sbjct: 469 GRQADNPKAPEPKTFSSKIFATTDFGYRRITVERPLRLSVQFTGERLEELRFAPKPFNVV 528

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            +  ++                     V+  +K+N +        +  I   +NA   +D
Sbjct: 529 -MKWAYEQFGQSWTDADYGDLSDVAVEVRAYVKANFS-----DLKEKQIKELLNATLWRD 582

Query: 569 PRA 571
            RA
Sbjct: 583 QRA 585



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 80/166 (48%), Gaps = 26/166 (15%)

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG---------- 579
                F +E  K+ +   + +   +      ++A   K+P A  V               
Sbjct: 612 DDFNLFEEELKKALKLTGVNLDLREK--KQLLDAVSWKNPEAQRVIKKVHKEKANPLYGL 669

Query: 580 --------EWIPDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKD 625
                   E+  D +L + EN+P   S      ++ YF +EV+PHVPDA+ID    DEKD
Sbjct: 670 FAVAGKVVEFQADGDLRDNENIPLDPSRSVTETVEAYFKKEVAPHVPDAWIDAGKRDEKD 729

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            E+G VGYEI FNR FY Y P R L +IDA+L  V A+I  LL E+
Sbjct: 730 GELGIVGYEIPFNRHFYVYAPPRDLVEIDADLDVVSAEIMALLREV 775


>gi|222444444|ref|ZP_03606959.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434009|gb|EEE41174.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii
           DSM 2375]
          Length = 541

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 194/565 (34%), Positives = 311/565 (55%), Gaps = 38/565 (6%)

Query: 120 FSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               I  L +  +L+K+ + FS   ++L P  V +  M  I+E LIRRF  + +E A + 
Sbjct: 1   MEKHINTLSEKNILFKLVRKFSETTVDLSPKAVSNHEMGTIFEELIRRFSEQSNEEAGEH 60

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPRDVV L T LL   ++       G I+ +YDP CGTGG LT    ++ +        
Sbjct: 61  FTPRDVVKLMTELLFAGEE----NESGSIKLVYDPACGTGGMLTSCKEYIQNINPDI--- 113

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +V +GQE++ E +A+C A ML++  +++  +         STLS D  +G++F Y +S
Sbjct: 114 -DIVLYGQEIQDEIYAICKADMLMKGEKAENIKGP------YSTLSNDKLSGEKFDYMIS 166

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G+ WE D D V+ E + G  GRFG GLP+ SDG +LF+ H+ +K++   N   R A
Sbjct: 167 NPPYGRDWETDADEVKSEAEQGYNGRFGAGLPRKSDGQLLFIQHMISKMK--TNDKSRIA 224

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+ + SPLF G AGSGES IR+W+ END +EA++ALP  LFF T I TY+WIL+N+KT  
Sbjct: 225 IITNGSPLFTGDAGSGESNIRKWIFENDYLEALIALPDQLFFNTGIGTYIWILTNKKTPN 284

Query: 418 RRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+G+VQLI+A   +  +R N G KR  I +D   +I+  Y         ++ +   FGY 
Sbjct: 285 RQGRVQLIDARKEYAGMRKNLGNKRHTIPEDSITKIIKTYNEFAESDKVKIYNNEDFGYT 344

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSP----------LHQSFWLDILKPMMQQI 526
           +I V R +++++ + +  L  L +   ++KL+             ++      + + + +
Sbjct: 345 KIIVERLMQLNYQVTQERLENLYSYSAFKKLAESKSKDPKTKIADETEGKKQQEEIKEAL 404

Query: 527 YPYGWAESFVKESIKSNEAKTL-KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
              G       ++ ++   + L +     +FI   I      D +A  VTD  G+   D+
Sbjct: 405 LTIGDDLYTDWDAFEAKVKQALNQFDLKPAFIKNIIEKLSEHDDKAGYVTDKKGKPKADS 464

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
           NL + E +P +++I DYF  EV  + PDA+ +         +  ++GYEINF ++FY Y+
Sbjct: 465 NLRDAEKIPLVQNIDDYFEEEVLKYYPDAWYE--------NKKNKIGYEINFTQYFYIYE 516

Query: 646 PSRKLQDIDAELKGVEAQIATLLEE 670
           P R L++I++++  V A+I  LL+E
Sbjct: 517 PPRSLEEIESDISKVTAEIQELLKE 541


>gi|283787022|ref|YP_003366887.1| Type I restriction-modification system, methylase (M) subunit
           [Citrobacter rodentium ICC168]
 gi|282950476|emb|CBG90139.1| putative Type I restriction-modification system, methylase (M)
           subunit [Citrobacter rodentium ICC168]
          Length = 786

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 230/612 (37%), Positives = 334/612 (54%), Gaps = 66/612 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 1   MTN--TNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 58

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  ++     ++ +G SF+NTS+  L  +G  + + NLESY+ +FS +A+ IFE
Sbjct: 59  ELKTSPLPEDAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFE 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 178

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSAGMEYVHELNPN--- 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 235 -AVMRAFGQELNPESYAICKADMLIKGQDVS-------RIKLGNTLSNDQLPQDQFDYML 286

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 287 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGT 346

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 406

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK----- 463
           LSN+K  ER+GKVQLI+ T+L   +R   G KR ++ +D  + I   +   +        
Sbjct: 407 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFKVVDATTLE 466

Query: 464 -----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 467 ELGLEKAAEQKSSRGRQPATAKTEATKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           +  L         +P+ + +     +   +    +   E+  +  IK+  A     +  +
Sbjct: 527 ITTLRFAPKPFN-APMERLYDEFAAQWQEETYGDFSELEAEARAIIKAEFA-----ELKE 580

Query: 555 SFIVAFINAFGR 566
             I   +++   
Sbjct: 581 KQIKDLLDSKLW 592



 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 65/194 (33%), Positives = 85/194 (43%), Gaps = 26/194 (13%)

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           +  R L    Q     +      +         F          KT  VK        FI
Sbjct: 593 LAQRALLEKAQQIQAALGTQAGGKTLVSNDFNQFQMTL--KGAIKTAGVKLDAKENKQFI 650

Query: 562 NAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES----- 598
           +A   K+P A+PV                   G   E+  D  L + ENVP   +     
Sbjct: 651 DAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAVSTSD 710

Query: 599 -IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I++YF  EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L++IDA+L
Sbjct: 711 LIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLEEIDADL 770

Query: 658 KGVEAQIATLLEEM 671
             V A+I  LL+E+
Sbjct: 771 DAVSAEIMKLLQEV 784


>gi|327396329|dbj|BAK13751.1| type I site-specific restriction-modificationsystem, M subunit and
           related helicases [defense mechanisms] hypothetical
           protein [Pantoea ananatis AJ13355]
          Length = 786

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 230/612 (37%), Positives = 332/612 (54%), Gaps = 66/612 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 1   MSD--NNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 58

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S++  ++     ++ +  SF+NTS   L  +G  + + NLESYI +FS +A+ IFE
Sbjct: 59  ELKASSLPEDAKEKFLLRASTLSFFNTSRMDLGKMGQNDIKANLESYIQAFSPDAREIFE 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAESSNETAGE 178

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPN--- 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 235 -AVMRAFGQELNPESYAICKADMLIKGQD-------VSRIKLGNTLSNDQLPQDQFDYML 286

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 287 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGT 346

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T I TY+WI
Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGITTYVWI 406

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK----- 463
           LSN+K  ER+GKVQLI+ T+L   +R   G KR ++ +D  + I   +   E        
Sbjct: 407 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFEVMDATTLE 466

Query: 464 -----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 467 ELGLEKAAEQKSSRGRQPVTARTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           +A L         +P+ + +     +        +   E+  +  IK+  A     +  +
Sbjct: 527 IATLRFAPKPFN-APMERLYEEFAAQWQADNHGDFSELEAEARAIIKAEFA-----ELKE 580

Query: 555 SFIVAFINAFGR 566
             I   ++    
Sbjct: 581 KQIKDLLDRKLW 592



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 85/194 (43%), Gaps = 26/194 (13%)

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           +  R L    Q     +      +         F          KT  VK        FI
Sbjct: 593 LVHRGLMEKAQQIQTALGTQAGGKTLVSNDFNQFQMTL--KGAIKTAGVKLDAKENKQFI 650

Query: 562 NAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES----- 598
           +A   K+P A+PV                   G   E+  D  L + ENVP   +     
Sbjct: 651 DAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAVSTSD 710

Query: 599 -IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I+DYF  EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L++IDA+L
Sbjct: 711 LIEDYFKAEVLPHVNDAWINADKRDAKDNEVGIVGYEIPFNRHFYVYQPPRPLEEIDADL 770

Query: 658 KGVEAQIATLLEEM 671
             V A+I  LL+E+
Sbjct: 771 DAVSAEIMKLLQEV 784


>gi|323351171|ref|ZP_08086827.1| type I restriction-modification [Streptococcus sanguinis VMC66]
 gi|322122395|gb|EFX94106.1| type I restriction-modification [Streptococcus sanguinis VMC66]
          Length = 702

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 208/702 (29%), Positives = 319/702 (45%), Gaps = 76/702 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + +S  N +W  A  L G ++   +  VI+P  +L RLE AL PT+  V   Y   
Sbjct: 13  KNDVNISSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQVIAAYKKD 72

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +   +     ++GY +YNTS ++L  L         N  +Y+  +S   K I E+  F
Sbjct: 73  KKTPEQI--LEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  L + G L+ + K FS I+L P TV    M  ++E +IRRF    +E A    TP
Sbjct: 131 KEQVHTLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LLL   D        ++  + D   GTGG L  A +++    S       +
Sbjct: 189 REVIALMVNLLLVEADEELFVDKRIV-KILDMAAGTGGMLATAKSYIRRLNSE----VNV 243

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           +  GQE   ET+ +  A MLIR+  SD        ++  +    D F  K+ ++ ++NPP
Sbjct: 244 LLFGQEYLSETYGIGRADMLIRQENSD------YFVKTDTLKDGDPFADKKMNFVIANPP 297

Query: 301 FGKKWEK-----------DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           FG+ W              KD    E  +G  GRF    P   D  +LF +H   KL   
Sbjct: 298 FGQSWGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKL--- 353

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRAAI+ + SPLF+G   SGES+IRR++LENDL+EAI+ALP   F+ T I  Y+WI
Sbjct: 354 -EKNGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIWI 412

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            +  K  +RR KVQ I+AT+ +  +R   G+KRR +++D  RQI+  Y + E     ++ 
Sbjct: 413 YNKNKAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKIF 472

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D + F Y+   V++PL+    + +  + ++++     KL   +Q   L  ++P       
Sbjct: 473 DNKEFLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDEK 532

Query: 529 YGWAESFVKESIKSN-----------------------EAKTLKVKASKSFIVAFINAFG 565
                +  K   +                              +VK + + + A   A  
Sbjct: 533 KLQDLAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLSEVKVTPANVNAIALAMS 592

Query: 566 RKDPRADPVTDVNGEW--------IPDTNLTEYENVPYLESIQDYFVREVSPHVPDA--Y 615
             D  A+ VT    +         + D    + E V   E+++DYF REV PHVPDA  +
Sbjct: 593 EMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTENVEDYFAREVYPHVPDAHYW 652

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            D+             G EI F R+FYQYQ       + AE 
Sbjct: 653 FDEGKGY---------GAEIPFTRYFYQYQAPESADKLLAEF 685


>gi|324991450|gb|EGC23383.1| type I restriction-modification [Streptococcus sanguinis SK353]
 gi|332362404|gb|EGJ40204.1| type I restriction-modification [Streptococcus sanguinis SK1056]
          Length = 702

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 208/700 (29%), Positives = 318/700 (45%), Gaps = 72/700 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + +S  N +W  A  L G ++   +  VI+P  +L RLE AL PT+  V   Y   
Sbjct: 13  KNDVNISSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQVIAAYKKD 72

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +   +     ++GY +YNTS ++L  L         N  +Y+  +S   K I E+  F
Sbjct: 73  KKTPEQI--LEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  L + G L+ + K FS I+L P TV    M  ++E +IRRF    +E A    TP
Sbjct: 131 KEQVHTLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LLL   D        ++  + D   GTGG L  A +++    S       +
Sbjct: 189 REVIALMVNLLLVEADEELFVDKRIV-KILDMAAGTGGMLATAKSYIRRLNSE----VNV 243

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           +  GQE   ET+ +  A MLIR+  SD        ++  +    D F  K+ ++ ++NPP
Sbjct: 244 LLFGQEYLSETYGIGRADMLIRQENSD------YFVKTDTLKDGDPFADKKMNFVIANPP 297

Query: 301 FGKKWEK-----------DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           FG+ W              KD    E  +G  GRF    P   D  +LF +H   KL   
Sbjct: 298 FGQSWGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKL--- 353

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRAAI+ + SPLF+G   SGES+IRR++LENDL+EAI+ALP   F+ T I  Y+WI
Sbjct: 354 -EKNGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIWI 412

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            +  K  +RR KVQ I+AT+ +  +R   G+KRR +++D  RQI+  Y + E     ++ 
Sbjct: 413 YNKNKAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKIF 472

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D + F Y+   V++PL+    + +  + ++++     KL   +Q   L  ++P       
Sbjct: 473 DNKEFLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDEK 532

Query: 529 YGWAESFVKESIKSN-----------------------EAKTLKVKASKSFIVAFINAFG 565
                +  K   +                              +VK + + + A      
Sbjct: 533 KLQDLAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLSEVKVTPANVNAIALTMS 592

Query: 566 RKDPRADPVTDVNGEW--------IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYID 617
             D  A+ VT    +         + D    + E V   E ++DYF REV PHVPDA   
Sbjct: 593 EMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTEDVEDYFAREVYPHVPDA--- 649

Query: 618 KIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
             + DE+       G EI F R+FYQYQ       + AE 
Sbjct: 650 HYWFDEEKG----YGAEIPFTRYFYQYQAPESADKLLAEF 685


>gi|281355059|ref|ZP_06241553.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548]
 gi|281317939|gb|EFB01959.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548]
          Length = 674

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/705 (29%), Positives = 332/705 (47%), Gaps = 80/705 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63
             L NF+W  A D L  + +  D+ K+ILPF +LRRL+  LE T+  V +     G    
Sbjct: 7   NRLFNFLWNIANDVLVQNVEKGDYKKIILPFIVLRRLDLLLEQTKETVLDFVNDEGFREL 66

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFD 119
                 E    V GY FYNTS ++++ L +    T    N E+Y+  +S + + I   FD
Sbjct: 67  PPESQSEQLYVVTGYPFYNTSPFTMNLLKAETDQTRLAQNFEAYLDGYSYHVQDIIRKFD 126

Query: 120 FSSTIARLEKAGLLYKICKNFS--GIELHPDTV------------PDRVMSNIYEHLIRR 165
              ++ RL  +  L  +   F+   I L  + V             +  M  ++E L+RR
Sbjct: 127 LKHSLERLFNSPCLGMLISKFTDENINLGIEPVLDDNGNEKYPGLDNHTMGTLFEELLRR 186

Query: 166 FGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F  + S   A +  TPRD V L   + + P     K+       +YD  CGTGG L+ + 
Sbjct: 187 FNEDFSVTEAGEHYTPRDYVRLLADVAIKPVVGKIKKGTYE---IYDAACGTGGILSVSE 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR----LESDPRRDLSKNIQQGS 280
           +   + GS  +       +GQEL+P+T+A+C A ++I      L+        +    GS
Sbjct: 244 DTFKELGSRIETN----IYGQELQPDTYAICKAEIMISGKNKPLDYTYGGVKRECFAFGS 299

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGP--------GLPKI 331
           T+S++   GK F +C+SNPPFG  W+KD +     +K+     RF P         LP I
Sbjct: 300 TISQNGHEGKLFDFCISNPPFGTPWKKDLENWGYANKDKITDLRFRPLVGDETLDFLPDI 359

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            D  MLFL +  ++++     G R   + + S LF G AG G S +RR ++ENDL+EAI+
Sbjct: 360 GDPQMLFLANNLSRMKSDTALGTRIVEIHNGSSLFTGDAGQGPSNLRRHIMENDLLEAII 419

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           A+P ++F+ T I T++W+++NRK   R+GKVQLI+AT + T +R N G K    N + R 
Sbjct: 420 AMPENMFYNTGIGTFVWVVTNRKEARRKGKVQLIDATAIKTPLRKNLGNKNCETNAEDRA 479

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            I+ +       + S++ D   FGY  I V RPLR+   LD         D++  KL   
Sbjct: 480 AIVKLLTDFAENERSKIFDNDEFGYWSITVERPLRLKLNLDP--------DLSEAKLKES 531

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            +    D +  +        W              K   +K ++ +I           P 
Sbjct: 532 EKKEIADAIAALPADAPLTDWD-----RCSPLLNLKKTLLKKARPYITETC-------PE 579

Query: 571 ADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
           A+ V     E  PD  L +YE VP  Y   I  +   EV P+ PDAY+D+          
Sbjct: 580 AEVV-----EGEPDPKLRDYEQVPLKYEGGIAAFMANEVLPYAPDAYLDE--------SK 626

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             +GYE++F ++FY+      ++ + A+++ +E +   +L+ +  
Sbjct: 627 TEIGYELSFTKYFYKPVELPSIESLAADIEAIEQRTDGILKAILA 671


>gi|282865355|ref|ZP_06274407.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282559828|gb|EFB65378.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 581

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 218/510 (42%), Positives = 307/510 (60%), Gaps = 22/510 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +FIW  A+ L G ++   +G V+LPFT+LRRL+C LEP ++ VRE    F   N  
Sbjct: 2   SALGSFIWSIADQLRGPYRPNQYGTVVLPFTILRRLDCILEPDQATVRELAAKFENPNRL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K  G +FYNTS YS + L   +    +NL  YI  FS +   +FE FDF   I  
Sbjct: 62  KVEVKKATGRTFYNTSNYSFANLLADADGLADNLADYIDRFSADV-DVFEYFDFKKEILA 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKAGLL +I K+F  I+LHPD V +  M + +E++IR+F    +E + D  TPRD + L
Sbjct: 121 LEKAGLLREIVKSFGKIDLHPDVVSNSDMGDAFEYIIRKFNEAANETSGDHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    D    E  G+IR+LYDPT GTGG L+ A  H+       K    L  +GQE
Sbjct: 181 LVDLLFAEKDVDLTEG-GIIRSLYDPTAGTGGMLSLAEEHLLAENPGAK----LGLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P+++A+C + +L +  ++        NI  G+TL+ D F G++F YC+SNPP+G  W+
Sbjct: 236 YNPQSYAICKSDLLAKGHDAT-------NIAFGNTLTDDAFKGRQFDYCMSNPPYGVDWK 288

Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +   AV++E  + G  GRF PGLP  SDG MLFL+HL +K+  P +GGGR  IV++ SPL
Sbjct: 289 QHAKAVKEERDSAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRVGIVMNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F+G A SG S IRRWLLE+DL+EAIVALPT++FF T IATY+WIL N K  +R+GKVQLI
Sbjct: 349 FSGAAESGPSNIRRWLLESDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDRQGKVQLI 408

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLR 482
           + T  WT +R N G K R I+D  R +++ +Y   E  + + S++L    FGY  + V R
Sbjct: 409 DGTSFWTKMRKNLGAKGREISDADRAEVVRLYADYEDADPELSKVLRNDEFGYWMVTVER 468

Query: 483 PL---RMSFILDKTGLARLEADITWRKLSP 509
           PL     + ++ + G  + ++     +  P
Sbjct: 469 PLLGEGGNPVVSRKGDPKPDSKKRDTENVP 498



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 30/179 (16%)

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           + L    +         +++    Y  A+  + + ++++E     V   +  +       
Sbjct: 419 KNLGAKGREISDADRAEVVRLYADYEDADPELSKVLRNDEFGYWMVTVERPLL------- 471

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVP 612
                  +PV    G+  PD+   + ENVP+               IQ YF  EV PHVP
Sbjct: 472 ---GEGGNPVVSRKGDPKPDSKKRDTENVPFTYGGSTAGAAAEREVIQAYFDAEVKPHVP 528

Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           DA+ID            + GYE+ F R FY+Y P R L +IDA+L+   A+I  LL E+
Sbjct: 529 DAWIDWAK--------TKTGYEVPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579


>gi|88811657|ref|ZP_01126911.1| type I restriction-modification system, M subunit [Nitrococcus
           mobilis Nb-231]
 gi|88791048|gb|EAR22161.1| type I restriction-modification system, M subunit [Nitrococcus
           mobilis Nb-231]
          Length = 767

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/778 (25%), Positives = 325/778 (41%), Gaps = 126/778 (16%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
             +   + +FIW  A+D L   F+   +  VILP  ++RR++  LEPT+  V +      
Sbjct: 3   QATHNKIVSFIWGIADDVLRDLFRRGKYPDVILPMCVIRRMDAVLEPTKQTVLDTKKMLD 62

Query: 64  GSN--IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFED 117
            +       +    AG +FYNTS+++L  L S  ++     + E Y+  FS N + I E+
Sbjct: 63  EAQITEQRAALCDAAGQAFYNTSKFTLRDLTSRGSQQQLLADFEDYLNGFSANVQDILEN 122

Query: 118 FDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           F F + +  L ++  L  +   F    I+L P  + +  M  ++E L+R+F  E +E A 
Sbjct: 123 FKFRNQLPTLSRSDSLGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEAG 182

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD V L   L+  P +A  K    +   LYD  CGTGG LT A   +A   +   
Sbjct: 183 EHWTPRDAVRLMANLVFLPIEAEIKSGTYL---LYDCACGTGGMLTVAEETLAAIAAKRG 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                + +GQE+ PET+AVC + ML++        D      + STLS D +  + F + 
Sbjct: 240 QQVTTLLYGQEINPETYAVCKSDMLLKG--EGESADHIVGGAEWSTLSHDAYPAQEFDFM 297

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--------KISDGSMLFLMHLANKLE 347
           L+NPP+GK W+KD +A+          RF             + SDG MLFL ++A+K+ 
Sbjct: 298 LANPPYGKSWKKDLEAMGG-KTGMRDPRFKVMHNGEELSLVTRSSDGQMLFLANMASKMN 356

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T IATY+
Sbjct: 357 DKSILGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGIATYV 416

Query: 408 W------------------------------------------------ILSNRKTEERR 419
           W                                                 L  ++T E +
Sbjct: 417 WVLSNKKPAHRTGQVQLIDASRWFKPLRKNLGKKNCELSTEDIERISRTFLDFKETPESK 476

Query: 420 GKVQLINATDLWTSIRNEG--KKRRIIN-------------DDQRRQILDIYVSRENGKF 464
                 NA   +  +  E   +    ++             ++ R  + D +       F
Sbjct: 477 ---IFPNAAFGYWKVTVERPLRLHSQLSRKAIETLRFASGDEELRAMLFDEFGEELFANF 533

Query: 465 SRMLD--YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           SR+ +   +                    K GL   +      + +       +++   +
Sbjct: 534 SRIANPLEKRLADWGSDEDEGDEDEDATTKKGLPEKKRKKLLDRKTWARDGRLVEVATKL 593

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW- 581
             ++    + +  +     S   K L +K   + +   + A   +   A PV        
Sbjct: 594 RAELGDALFEDHNIFRERVSAALKNLGLKLPAAELKLILKAVSWRVETAPPVIAKVHRPG 653

Query: 582 ------------------------IPDTNLTEYENVPY--LESIQDYFVREVSPHVPDAY 615
                                    PD+ L + E VP      I+ +  REV P+ PDA+
Sbjct: 654 KAQADPLHGLFEATVGDKPAIVAYEPDSELRDTEQVPLLEEGGIEAFIRREVLPYTPDAW 713

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           I         ++  ++GYE++F R FY+ QP R L++I A++  +E +   LL+++  
Sbjct: 714 I--------KEDATKIGYEVSFTRHFYKPQPLRTLEEIRADILAIEKEAEGLLDDILG 763


>gi|149373159|ref|ZP_01892028.1| type I restriction-modification [unidentified eubacterium SCB49]
 gi|149354261|gb|EDM42831.1| type I restriction-modification [unidentified eubacterium SCB49]
          Length = 600

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/674 (32%), Positives = 348/674 (51%), Gaps = 105/674 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYLAF 62
            +    A+ IW+ A  L GD+K +D+GKVILP T+LRRL+C L P +  V +   K    
Sbjct: 2   NNFKEKADKIWEVANLLRGDYKRSDYGKVILPMTVLRRLDCVLAPKKQLVLDTLPKVEKL 61

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            G     +     AG +F+N S++    +     N  +NL +YI  FS +A+ I E F+F
Sbjct: 62  EGETAKDKVLNATAGMNFHNRSKFDFDKIIADPNNVASNLRNYINGFSTSAREIIEYFNF 121

Query: 121 SSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              I R++  KA +L+++ K F GI+L  +++    M  ++E LIRRF  + +E A +  
Sbjct: 122 DDQIDRMDDPKADILFRVVKAFQGIKL--ESMDSMEMGYVFEDLIRRFAEQSNETAGEHF 179

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L + D  +  +  G+++TLYDP CGTGG L+    HV +   + +   
Sbjct: 180 TPREVIKLMVNMLFNEDSEILTKE-GIVKTLYDPACGTGGMLSVGEQHVKELNPNAE--- 235

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQE+ PE++A+C + MLI+            N++ G+T + D    ++F Y LSN
Sbjct: 236 -LKVFGQEINPESYAICKSDMLIKGQNPS-------NVKFGNTFTVDGLEDEQFDYMLSN 287

Query: 299 PPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  ++ EH+N G  GRFG GLP+I+DGS+LFL H+ +K++     G R A
Sbjct: 288 PPFGVDWKKAQKIIKAEHENKGMQGRFGAGLPRINDGSLLFLQHMISKMK---PSGTRIA 344

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV + SPLF+G AGSGESEIR+W++END +EAIVA+P  LF+ T I+TY+W+++N+K   
Sbjct: 345 IVFNGSPLFSGSAGSGESEIRKWIIENDWLEAIVAMPDQLFYNTGISTYVWLVNNKKE-- 402

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                            + + +            I D     +  +F + +D ++ G +R
Sbjct: 403 --------------EKRKGKVQLINATGTKDEELIAD--EKLDVNRFWKKMD-KSLGSKR 445

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
            ++        I   + L     +  + K+ P                   +G+    V+
Sbjct: 446 KEIPENGNSKGIGFVSQLYGNFEENEFSKILP----------------NEYFGYWRVTVE 489

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY-- 595
           + +K                          D +   V    G+   D+ L +YEN+P+  
Sbjct: 490 QPLK--------------------------DEKGQIV-KSKGKPKADSKLRDYENIPFLR 522

Query: 596 --------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
                    ++I  YF REV+PH+P+A+ID+        +  ++GYEINF ++FY+++P 
Sbjct: 523 TEKDGSLVPQTISAYFEREVTPHLPEAWIDE--------KKTKIGYEINFTKYFYEFKPL 574

Query: 648 RKLQDIDAELKGVE 661
           R L DI A++  +E
Sbjct: 575 RSLTDIKADILALE 588


>gi|330469018|ref|YP_004406761.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
 gi|328811989|gb|AEB46161.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
          Length = 581

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 207/510 (40%), Positives = 297/510 (58%), Gaps = 22/510 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +FIW  A+ L G ++   +G VILP T+LRRL+  LEP R  VR     +   N  
Sbjct: 2   STLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDYILEPDRELVRALAAKYDNPNRL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K  G  FYNTS YS + L   +    +NL  YI  FS +   +F+ FDF   I  
Sbjct: 62  KIEVKKATGRPFYNTSNYSFANLLADADGLADNLADYIDRFSPDV-DVFQYFDFKKEILA 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKA LL ++  +F  + LHPD V +  M + +E++IR+F    +E + D  TPRD + L
Sbjct: 121 LEKAELLREVITSFKAVNLHPDVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    DA   E+  ++R+LYDPT GTGG L  A  H+       K    L  +GQE
Sbjct: 181 LVDLLFAERDAELTEA-DIVRSLYDPTAGTGGMLALAEEHLLAQNPGAK----LRLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P+++A+C + +L +  +       + NI  G+TL+   F  ++F +C+SNPP+G  W+
Sbjct: 236 YNPQSYAICKSDLLAKGHD-------TTNIAFGNTLTDPAFKDRKFDFCMSNPPYGVDWK 288

Query: 307 KDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +   AV KE  + G  GRF PGLP  SDG MLFL+HL +K+  P +GGGRA IV++ SPL
Sbjct: 289 QYAKAVTKERDEAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRAGIVMNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG A SG S IR+WLLE+DL++AIVALPT++FF T IATY+WIL N K  +R+G VQLI
Sbjct: 349 FNGAAESGPSNIRKWLLEHDLVDAIVALPTNMFFNTGIATYIWILDNTKHPDRKGLVQLI 408

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLR 482
           + T  WT +R N G K R ++++ R +++ +Y    +G   +S++L    FGY  I V R
Sbjct: 409 DGTSFWTKMRKNLGAKNRELSEENRAKVVQLYADFTDGDPDYSKVLRNDEFGYWTITVER 468

Query: 483 PL---RMSFILDKTGLARLEADITWRKLSP 509
           PL     + ++D+ G  + +      +  P
Sbjct: 469 PLLDESGNPVVDRKGKPKPDTKKRDTENVP 498



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 35/205 (17%)

Query: 484 LRMSFILDKTGLARLEADITW-----RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           L  +   D+ GL +L    ++     + L   ++    +    ++Q    +   +    +
Sbjct: 393 LDNTKHPDRKGLVQLIDGTSFWTKMRKNLGAKNRELSEENRAKVVQLYADFTDGDPDYSK 452

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
            ++++E     +   +  +          D   +PV D  G+  PDT   + ENVP+   
Sbjct: 453 VLRNDEFGYWTITVERPLL----------DESGNPVVDRKGKPKPDTKKRDTENVPFTYG 502

Query: 599 ------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
                       IQ YF  EV PHVPDA+ID   +        + GYEI F R FY+Y P
Sbjct: 503 GSTAGAAGKIEVIQAYFDVEVKPHVPDAWIDWTKV--------KTGYEIPFTRHFYKYVP 554

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R L +IDA+L+   A+I  LL E+
Sbjct: 555 PRPLAEIDADLEKQVAKILDLLREV 579


>gi|315446767|ref|YP_004079646.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315265070|gb|ADU01812.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 578

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/562 (39%), Positives = 307/562 (54%), Gaps = 23/562 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L NF+W  A+ L G +K   +G VILPFT+LRRL+C LEPTR  VRE    + G  +D
Sbjct: 2   SKLGNFVWGIADQLRGVYKPHQYGGVILPFTILRRLDCTLEPTREEVRELAEKYSGGALD 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           ++   +  G +FYNTS +    L       R NL  YI  FS N   +FE F F + +A 
Sbjct: 62  VQ-VKRKTGLAFYNTSPFDFKLLLKDPEGLRANLMDYITGFSANI-DVFERFKFENELAT 119

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   LY +   F+ ++LHP++V +  M +++EHLI +F    +E A +  TPRD + L
Sbjct: 120 LDEKNRLYLVTSQFAEVDLHPNSVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIRL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   D+    E PG +RT+YDPT GTGG L+ A   + +     +    L  +GQE
Sbjct: 180 MVDLLFAEDNVALLE-PGTVRTIYDPTAGTGGMLSVAEERLLERNPGAR----LRLYGQE 234

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           +  +++A+C + M+ +  +         NI+ G TL  DLF  + F +C+SNPP+G  W+
Sbjct: 235 INDQSYAICKSDMIAKGQD-------VGNIKLGDTLEDDLFFDRTFDFCMSNPPYGVDWK 287

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             + +V+KE       RF  GLP I DG MLFL HLA+K+    +GGGRA IVL+ SPLF
Sbjct: 288 ASQKSVKKEALASN-SRFSHGLPSIGDGQMLFLSHLASKMRPAHDGGGRAGIVLNGSPLF 346

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           NG A SG S IR+WLLE DL+EAIVALPT++FF T IATY+WIL N K  ER GK+QLI+
Sbjct: 347 NGAAESGPSLIRQWLLETDLLEAIVALPTNMFFNTGIATYIWILDNAKRTERAGKIQLID 406

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLRP 483
           AT  WT +R   G K R ++ D R QIL +Y S + G   +S++     FGY  + V RP
Sbjct: 407 ATSFWTKMRKSLGSKNRELDADARDQILALYDSFDEGDPDYSKVFTANDFGYWSVTVERP 466

Query: 484 LRM---SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           LR        D+ G  + +A +   +  P              + I  Y  AE       
Sbjct: 467 LRTETGKVSTDRKGNPKPDAKLRDTENIPFTYGGNTAGDAARAETIEAYFEAEVLPHVPD 526

Query: 541 KSNEAKTLKVKASKSFIVAFIN 562
              +    KV     F   F  
Sbjct: 527 AWVDVAKTKVGYEIPFARHFYK 548



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 30/179 (16%)

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           + L   ++    D    ++     +   +    +   +N+     V   +          
Sbjct: 416 KSLGSKNRELDADARDQILALYDSFDEGDPDYSKVFTANDFGYWSVTVERPL-------- 467

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVP 612
             +       TD  G   PD  L + EN+P+             E+I+ YF  EV PHVP
Sbjct: 468 --RTETGKVSTDRKGNPKPDAKLRDTENIPFTYGGNTAGDAARAETIEAYFEAEVLPHVP 525

Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           DA++D            +VGYEI F R FY+Y P R L +ID++L    A+I  LL E+
Sbjct: 526 DAWVDVAK--------TKVGYEIPFARHFYKYVPPRPLAEIDSDLDKQVAKILELLREV 576


>gi|295697500|ref|YP_003590738.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
 gi|295413102|gb|ADG07594.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
          Length = 613

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 188/554 (33%), Positives = 281/554 (50%), Gaps = 35/554 (6%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             G    + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV E   + 
Sbjct: 2   ENGQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLEMKASL 61

Query: 63  GGSN--IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             +       +    AG +FYNTS ++L  L +  +R     +  +Y+  FS N + I +
Sbjct: 62  DKAGITHQDAALRMAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIID 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHL 162
           +F+F + I RL KA  L  + + F    I L P  V             +  M  I+E L
Sbjct: 122 NFEFRNQIPRLAKADALGTLIEKFLDPSINLSPQPVLGSDGSVRLPGLDNHAMGTIFEEL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +RRF  E +E A +  TPRD V L   L+ +P     +  P     LYD  CGTGG LT 
Sbjct: 182 VRRFNEENNEEAGEHWTPRDAVRLMAHLVFEPIADRIESGPYP---LYDGACGTGGMLTV 238

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   +            +   GQE+  ET+A+C A +L++  E D   ++    +  STL
Sbjct: 239 AEETLLQLAKERGKQVSVHLFGQEINAETYAICKADLLLKG-EGDAADNIVGGPEH-STL 296

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISDGS 335
           S D F G+ F + LSNPP+GK W+ D + +       +        G     + + SDG 
Sbjct: 297 SNDAFPGRTFDFMLSNPPYGKSWKSDLERMGGKAGIKDPRFVVQHRGEELSLITRSSDGQ 356

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAIVALP 
Sbjct: 357 MLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIVALPL 416

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILD 454
           ++F+ T IATY+W+L+NRK   R+G+VQLI+AT  +  +R N GKK   ++++  R++LD
Sbjct: 417 NMFYNTGIATYVWVLTNRKPGHRKGRVQLIDATQWYKPLRKNLGKKNCELSEEDIRRVLD 476

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            ++  E  + S++     FGY ++ V RPLR+  I D       +     R+ +   +  
Sbjct: 477 TFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKGI-DPERAYTAKEIKALRETAERAEDA 535

Query: 515 WLDILKPMMQQIYP 528
              I K       P
Sbjct: 536 PPVIKKIHKPGTAP 549


>gi|257064599|ref|YP_003144271.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792252|gb|ACV22922.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 586

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 210/574 (36%), Positives = 307/574 (53%), Gaps = 27/574 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + +++FIW  A+ L   FK  ++G +ILPFT++RRL+  LEPT+ AV E         
Sbjct: 2   NHSEISSFIWGTADLLRSSFKQHEYGDIILPFTVMRRLDVVLEPTKQAVLEAAAKKMPDA 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           +      K AG  FYNTSE+++  L   +   R NL  Y+ SFS     IF+ F     I
Sbjct: 62  LRDTMLKKAAGVDFYNTSEFTMRGLLSDADGIRENLTKYVTSFSPEIADIFDKFKIFDVI 121

Query: 125 ARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             L+   LL+ + + F    I+L P ++ +  M +IYE LIRRF    +E A +  +PRD
Sbjct: 122 KDLDDNDLLFLVVERFCNPRIDLSPASISNADMGDIYEELIRRFSEVSNETAGEHFSPRD 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
            + LA  LL+  +     + P  I  + DP  GTGG LT   + VA+          +V 
Sbjct: 182 GLRLAAELLVVGEMDDLTQ-PNRIVKVCDPCAGTGGALTVFADRVAEINP----QATVVT 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           + QE+  +++A+C +  +++            N+  G TL+ D   G+ F Y +SNPP+G
Sbjct: 237 YAQEINGQSYAICKSDTILKG-------GNIANVHLGDTLADDQMPGETFGYQISNPPYG 289

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             W+K + AV KEH+  G  GRFG GLP+ISDG +LF+ H+  K+     GGGR A+ L+
Sbjct: 290 VDWKKSQAAVRKEHEQLGFAGRFGAGLPRISDGQLLFVQHMVAKMRPVDEGGGRIAVFLN 349

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESE+RR+LL++DL+EAIVA+P D FF T IATY+W+L N K   R+GK
Sbjct: 350 GSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNTGIATYIWVLDNTKEPRRKGK 409

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRI 478
           VQLINA  ++T +R   G KR    D+Q  QI+ +Y   E  + K S++     FGY  +
Sbjct: 410 VQLINANGIYTKMRKSLGSKRNEFTDEQIAQIVGLYNDFEDADPKLSKVFANEEFGYVTV 469

Query: 479 KVLRPL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            V RP    R   + DK G    + ++   +  PL Q    D+ + M +++ PY      
Sbjct: 470 DVRRPQRDERGEIVRDKKGRPVADKELNDTENIPLTQ----DVDEYMAREVLPYAPDAWI 525

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
                K  +   LK   +  F + F   F    P
Sbjct: 526 EPRKQKKGQLLELKDGGTVGFEIPFTRHFYEYTP 559



 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 114/275 (41%), Gaps = 33/275 (12%)

Query: 408 WILSNRKTEERRGKV-QLINATDLWTSIR---NEGKKRRIINDDQRRQIL----DIYVSR 459
            +   R  +E  G++   +N + L+T          +R ++  D    I+    D + + 
Sbjct: 330 MVAKMRPVDEGGGRIAVFLNGSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNT 389

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
               +  +LD      R+ KV + +  + I  K            + L      F  + +
Sbjct: 390 GIATYIWVLDNTKEPRRKGKV-QLINANGIYTKMR----------KSLGSKRNEFTDEQI 438

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
             ++     +  A+  + +   + E   + V   +           ++D R + V D  G
Sbjct: 439 AQIVGLYNDFEDADPKLSKVFANEEFGYVTVDVRRP----------QRDERGEIVRDKKG 488

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD----KEIGRVGYEI 635
             + D  L + EN+P  + + +Y  REV P+ PDA+I+     +      K+ G VG+EI
Sbjct: 489 RPVADKELNDTENIPLTQDVDEYMAREVLPYAPDAWIEPRKQKKGQLLELKDGGTVGFEI 548

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
            F R FY+Y P R   +I AE++ +EA IA  L +
Sbjct: 549 PFTRHFYEYTPLRPSSEIFAEIRELEASIAEKLRK 583


>gi|150005917|ref|YP_001300661.1| type I restriction-modification system M subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|149934341|gb|ABR41039.1| type I restriction-modification system M subunit [Bacteroides
           vulgatus ATCC 8482]
          Length = 771

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 200/791 (25%), Positives = 359/791 (45%), Gaps = 155/791 (19%)

Query: 10  SLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG---- 64
            L   IW  A+D L   F    +  VILP  +LRRL+  LEPT+ AV ++Y +       
Sbjct: 3   QLIALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKVAVEQEYKSQIEAGLA 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDF 118
            N+D E+    +G ++YN S+++L+ L + ++ NN         Y+  +S+N K + ++F
Sbjct: 63  DNLDEEALKDESGQTYYNLSKWTLNRLKNQSSDNNDINYTNFIEYLNGYSENVKDVLKNF 122

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDT-------------VPDRVMSNIYEHLIRR 165
           +F + + +L     L  I +  +   L+                V +  M  ++E L+RR
Sbjct: 123 EFYAKVKKLADNDRLISIIERITDPRLNLTDRPATDPDGLPLPAVSNLQMGTLFEELLRR 182

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  E +E A +  TPRDV+ L   ++ +P     K++   I +LYDP CG+GG LT+  +
Sbjct: 183 FNEENNEEAGEHFTPRDVIELLAKMVFEP----VKDNLPKIISLYDPACGSGGMLTEGRD 238

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ + G     P  +  +G E+ PET+A+C +  +I+ ++ +        + +G+T++++
Sbjct: 239 YLLNMGV---TPNAIQMYGTEVNPETYAICKSDFIIKGVDPE-------GMHRGNTITEN 288

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKIS 332
            F  K+F Y L+NPP+GK W++DK  +  + K+    RF                 P+ S
Sbjct: 289 HFHNKQFGYMLTNPPYGKSWKEDKKKIYHD-KDLLDARFNLKLTNFIGEEEIVDSTPRTS 347

Query: 333 DGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW-LLENDLIEA 389
           DG +LF++   +K++       G R A + + S LF G AGSGES IRR+ L+EN+L++A
Sbjct: 348 DGQLLFILEEVDKMKSLEAQPQGSRVASIHNGSSLFTGDAGSGESNIRRYYLIENNLVDA 407

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQ 448
           IV LP ++F+ T I+TY+W+LSN K +    KVQLI+A+  +  +R     R   +    
Sbjct: 408 IVQLPNNIFYNTGISTYVWLLSNHKQDH---KVQLIDASKAFDKLRKNLGSRNCEVTPKD 464

Query: 449 RRQILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
              I+ IY++R   +        S++ D   F Y  +++ RPLR+           L  D
Sbjct: 465 ADDIVRIYMNRTECEANDDVRISSKIFDGDDFRYYSVQIERPLRLRCRFSAVKCDELLFD 524

Query: 502 ITWRKLSPL----------------------------------------------HQSFW 515
            +  +LS                                                 +   
Sbjct: 525 SSMMELSKWLYQTYGDKVYSGLEAEVTDIKEYLNENELKLTDKKFTTLVSAKKWQERRAL 584

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                 +M ++    + +  +  ++     K L +K + + +   +     +DP A PV 
Sbjct: 585 QQAAMKLMHKVGTAEYDDYNLFLALNQKAIKELGLKLTAAQLKTILRTNAVQDPTAKPVI 644

Query: 576 DVNGE-----------------------------------WIPDTNLTEYENVPYLESIQ 600
               +                                   +  D++L + E +P  E I 
Sbjct: 645 AKVLKAKNKDIPAFLATYGIDESLLPDYGYYPQTDGTYVTYEADSDLRDIEKIPVKEDIW 704

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           +Y  REV+P+V +A+I+          + ++G EI+FN++FY+    R L++ + ++  +
Sbjct: 705 EYVQREVNPYVSEAWINL--------PVTKIGCEISFNKYFYKPAQLRSLEENEHDILEL 756

Query: 661 EAQIATLLEEM 671
           + Q    +E +
Sbjct: 757 DRQSQGFIEAL 767


>gi|86738912|ref|YP_479312.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86565774|gb|ABD09583.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 583

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/554 (40%), Positives = 311/554 (56%), Gaps = 24/554 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L +FIW  A+ L G ++   +G VILP T+LRRL+C LEP R  VRE    F   N  
Sbjct: 2   STLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDCILEPDRETVRELARTFDNPNRL 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                K  G  FYNTS Y  S L   +    +NL  Y+  FS +   +FE FDF   I  
Sbjct: 62  KIEVKKATGRPFYNTSNYGFSNLLADADGLADNLADYLDRFSADV-DVFEYFDFKKEILA 120

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LEKAGLL +I  +F  I+LHP  V +  M + +E++IR+F    +E + D  TPRD + L
Sbjct: 121 LEKAGLLREIITSFKAIDLHPKVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL    +A   E+ G++RTLYDPT GTGG L  A  H+            L  +GQE
Sbjct: 181 LVDLLFAEKEADLSEA-GIVRTLYDPTAGTGGMLALAEEHLLAQNPDAN----LSLYGQE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P+++A+C + +L +  ++        NI  G+TL+ D F G++F +C+SNPP+G  W+
Sbjct: 236 YNPQSYAICKSDLLAKGHDAT-------NIAFGNTLTDDAFKGRKFDFCMSNPPYGVDWK 288

Query: 307 KDKDAV-EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +    V E+  + G  GRF PGLP  SDG MLFL+HLA+K+  P +GGGR  I+++ SPL
Sbjct: 289 QYAKKVTEERDEAGPYGRFAPGLPATSDGQMLFLLHLAHKMRAPKDGGGRVGIIMNGSPL 348

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG AGSG SEIRRWLLENDL+EAIVALPT++FF T IATY+WIL N K  + RG VQ+I
Sbjct: 349 FNGAAGSGPSEIRRWLLENDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDARGLVQII 408

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYRRIKVLR 482
           + T  WT +R N G K R I+D  R +++ +YV     +  +S++L    FGY  I V R
Sbjct: 409 DGTSFWTKMRKNLGSKGREISDTDREKVVSLYVDFLDADPDYSKVLSNDEFGYWTITVER 468

Query: 483 PL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           PL       ++D+ G  + +      +  P   ++         +      + ++ VK  
Sbjct: 469 PLLGEDGKPVVDRKGQRKPDPKKRDTENVPF--TYGGSTAGRAGKLDVINAYFDAEVKPH 526

Query: 540 IKSNEAKTLKVKAS 553
           +        KVK  
Sbjct: 527 VPDAWIDWAKVKTG 540



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 35/208 (16%)

Query: 484 LRMSFILDKTGLARLEADITW-----RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           L  +   D  GL ++    ++     + L    +       + ++     +  A+    +
Sbjct: 393 LDNTKHPDARGLVQIIDGTSFWTKMRKNLGSKGREISDTDREKVVSLYVDFLDADPDYSK 452

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
            + ++E     +   +  +               PV D  G+  PD    + ENVP+   
Sbjct: 453 VLSNDEFGYWTITVERPLL----------GEDGKPVVDRKGQRKPDPKKRDTENVPFTYG 502

Query: 599 ------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
                       I  YF  EV PHVPDA+ID   +        + GYEI F R FY+Y P
Sbjct: 503 GSTAGRAGKLDVINAYFDAEVKPHVPDAWIDWAKV--------KTGYEIPFTRHFYRYVP 554

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMATE 674
            R L +IDA+L    A+I  LL E+  +
Sbjct: 555 PRPLAEIDADLDKQIAKILDLLREVEGD 582


>gi|258545846|ref|ZP_05706080.1| type I restriction-modification system, M subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258518862|gb|EEV87721.1| type I restriction-modification system, M subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 793

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 208/803 (25%), Positives = 335/803 (41%), Gaps = 151/803 (18%)

Query: 3   EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--Y 59
           +       +++FIW  A++ L   +    +  VILPFT+LRRL+  LE T+  V E+  +
Sbjct: 7   QDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDVVLERKRF 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIF 115
           L          +    AG +FYN SE++L+ L         R++  +Y+  FS N + I 
Sbjct: 67  LDTHKVAEQDGALRMAAGQAFYNVSEFTLAKLKGSSQGQRLRDDFIAYLDGFSPNVQEIL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEH 161
             F+F + I +L  + +L  +  +F   E++   +P              +  M  ++E 
Sbjct: 127 TKFNFRNQIQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDVDGRIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD TCGTGG LT
Sbjct: 187 LIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVADRIESSTY---SLYDGTCGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   + +    H     +   GQE+  ET+A+C A +L++   ++    +    +  ST
Sbjct: 244 VAEEALHELAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADK--ST 301

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGEL------GRFGPGLPKISD 333
           LS D F  + F + +SNPP+GK W+ D + +  +KE  +               + + SD
Sbjct: 302 LSNDQFRSREFDFMISNPPYGKSWKTDLERMGGKKEFNDPRFIVSHAGNNEFKLITRSSD 361

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND  EAI+AL
Sbjct: 362 GQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWCEAIIAL 421

Query: 394 PTDLFFRTNIATYLWILSNRKTEERR----------------------------GKVQLI 425
           P ++F+ T IATY+W+L+N+K E RR                            G +Q I
Sbjct: 422 PLNIFYNTGIATYIWMLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELSAGDIQRI 481

Query: 426 -----------------NATDLW---TSIRNEGKKRRIINDDQRRQI----------LDI 455
                            +  D      ++    + +  ++D++   +           +I
Sbjct: 482 LDLYLGEAQETAESKWFDTEDFGYWKITVERPLRLKSQLSDERIEPLRFASGDEALRAEI 541

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVL---RPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           Y +     +S       F  R+  +    R    +   D           T RK  P  +
Sbjct: 542 YATHGEALYS------EFAKRKQAIEAWLRDEDENEDDDGEDSGDDGEATTSRKSVPAKR 595

Query: 513 -------------SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
                           +++ +   + +    + +     +      K    K       A
Sbjct: 596 RKKLLDASTWQRDKGLMEVAQRAQKALGSAVFDDHNEFRARFDAALKAQGDKLGAPEKKA 655

Query: 560 FINAFGRKDPRADPVTDVNG---------------------------EWIPDTNLTEYEN 592
              A   +D  A PV                                E+ PD+ L + E 
Sbjct: 656 IYKAVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMVEYEPDSELRDTEQ 715

Query: 593 VPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
           VP  E   I  +F REV PH PDA+I          +  ++GYEI+F R+FY+  P R L
Sbjct: 716 VPLKEPGGIDAFFAREVLPHAPDAWIA--------TDKTQIGYEISFARYFYKPVPLRTL 767

Query: 651 QDIDAELKGVEAQIATLLEEMAT 673
            +I A++  +E Q   LL ++  
Sbjct: 768 AEIRADILALEQQSEGLLHKIVG 790


>gi|158520293|ref|YP_001528163.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509119|gb|ABW66086.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 569

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 207/542 (38%), Positives = 299/542 (55%), Gaps = 23/542 (4%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +    ANFIW+ A+D L G FK  ++G VILPF + RRL+C L   +  + + Y  F  
Sbjct: 2   NNFQDKANFIWQVADDILRGTFKQHEYGDVILPFVVFRRLDCVLNGKKDEIIDTYKKFQK 61

Query: 65  SNIDLESFVKVA--GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              D  + V  A  G  FYN S Y L  L   + N   N  +YI  +S N + I ++F  
Sbjct: 62  KLDDPSAVVLQATGGLKFYNVSLYDLQRLTQDAGNIEANFNNYINGYSKNVREIIDNFSI 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              IA+L K  LL+ +   F+ I+LHPD V +  M  I+E L+RRF    +E A +  TP
Sbjct: 122 EKIIAKLAKNELLFMLVDKFTEIDLHPDKVKNHEMGYIFEELLRRFSEMSNETAGEHYTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL        K   G++R++YDP CGTGG LT    H+     H      +
Sbjct: 182 REVIRLMVNLLFAEQKEELK-GKGIVRSVYDPACGTGGMLTITKEHIQ---KHINPKLEV 237

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           +  GQEL  +T+A+  + +L+   E D       NI+ G++ S D F  KRF++ LSNPP
Sbjct: 238 ILFGQELNEQTYAIAKSDVLMTGGEPD-------NIKLGTSFSNDQFRDKRFNFMLSNPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG  W+K++  +  E +    GRF  GLP++SDG+MLFL H+ +K+E     G R AI+ 
Sbjct: 291 FGVSWKKEQSFINNEAE-DPGGRFHAGLPRVSDGAMLFLQHMISKMEPT---GSRIAIIH 346

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGES IR+W++E+D +EAIVALPT+LFF T IATY+WI++NRK   RRG
Sbjct: 347 NGSPLFTGDAGSGESNIRKWIIESDWLEAIVALPTELFFNTGIATYIWIVTNRKPAHRRG 406

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQL+NA      +R   G KR  I  +Q +QI DIY   ++G+F ++ D   FG+ ++ 
Sbjct: 407 KVQLVNAVSFAQKMRKSLGSKRNFITTEQIQQITDIYTGFKDGEFCKVFDNEDFGFTKVT 466

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RP      + K      + D + R    +     +DI +   +++ P+       +  
Sbjct: 467 VERPEMKKDKIVKDKNGNPKPDTSLRDYEKI--PLKVDIDEYFKREVLPHVPDAWMDRSK 524

Query: 540 IK 541
            K
Sbjct: 525 DK 526



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 8/105 (7%)

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
            +   V D NG   PDT+L +YE +P    I +YF REV PHVPDA++D+          
Sbjct: 473 KKDKIVKDKNGNPKPDTSLRDYEKIPLKVDIDEYFKREVLPHVPDAWMDR--------SK 524

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +VGYEINF ++FY+YQP R L +I A++  +E +   LL E+ +
Sbjct: 525 DKVGYEINFTKYFYKYQPLRSLDEIKADILALEKETDGLLSEVLS 569


>gi|268325015|emb|CBH38603.1| putative type I restriction enzyme, M subunit [uncultured archaeon]
          Length = 573

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 208/574 (36%), Positives = 311/574 (54%), Gaps = 24/574 (4%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +    ANFIW+ A+D L G FK  ++G+VILPF +LRRL+C LE  + AV      F  
Sbjct: 2   NNFQDKANFIWQVADDILRGTFKQHEYGEVILPFVVLRRLDCVLEEHKDAVIATNNKFKD 61

Query: 65  SNIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
              D    +  A  G +FYNTS Y L  L     N   N  +YI  +S N + + E+F  
Sbjct: 62  VLPDPAQVLLHATNGLNFYNTSYYDLRRLAQDAGNVELNFNNYINGYSANVREMIENFQI 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +A+L K  L++ +   F+ I+LHPD V +  M  I+E L+RRF    +E A +  TP
Sbjct: 122 DKIVAKLVKNDLMFMLVAKFTEIDLHPDVVANHEMGYIFEELLRRFSEMSNETAGEHYTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL     A   +  G+IRT++DP CGTGG LT A  H+            +
Sbjct: 182 REVIRLMVNLLFAEHQAEL-QGKGIIRTVFDPACGTGGMLTIAKEHIQQK---INPDVEI 237

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           V +GQEL  +T+A+  + +LI   E+D       NI+ G++ S+D F G +F+Y LSNPP
Sbjct: 238 VMYGQELNEQTYAIAKSDVLIMGEEAD-------NIRPGTSFSEDKFKGNKFNYMLSNPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG  W+K+++ ++ E  N   GRF  GLP++SDG+++FL H+ +K+E     G R AI+ 
Sbjct: 291 FGVSWKKEQEFIKDEA-NDPYGRFHAGLPRVSDGALMFLQHMISKMEPR---GSRIAIIF 346

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGES IR+W++END +EAI+ALPT+LF+ T IATY+WI+SNRK E+R G
Sbjct: 347 NGSPLFTGDAGSGESNIRKWIIENDWLEAIIALPTELFYNTGIATYIWIVSNRKPEKRIG 406

Query: 421 KVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLINA   +  +R   G KR  +++ Q +++  IY   E G+  ++ D   FGY +I 
Sbjct: 407 KVQLINAVGYYKKMRKSLGNKRNYVSEAQIQELTGIYSQFEEGENCKIFDNDYFGYNKIT 466

Query: 480 VLRPL--RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP-YGWAESFV 536
           V RPL      + DK    + +  +   +  PL +       + +   +   +       
Sbjct: 467 VERPLMEHSEMVRDKRSKPKPDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMDRSKDK 526

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                +      + K  ++      +    +   
Sbjct: 527 VGYELNFTKYFYEYKPLRALKEIKADILALEGET 560



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 8/105 (7%)

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
             ++ V D   +  PDT+L +YE VP +E + +YF REV PHV DA++D+          
Sbjct: 473 EHSEMVRDKRSKPKPDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMDR--------SK 524

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +VGYE+NF ++FY+Y+P R L++I A++  +E +   LL+E+  
Sbjct: 525 DKVGYELNFTKYFYEYKPLRALKEIKADILALEGETEGLLKEILG 569


>gi|111026978|ref|YP_708956.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus jostii RHA1]
 gi|110825517|gb|ABH00798.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus jostii RHA1]
          Length = 578

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/562 (37%), Positives = 309/562 (54%), Gaps = 23/562 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L NF+W  A+ L G +K   +G VILPFT+LRRL+C LEPTR  VR     +    +D
Sbjct: 2   SKLGNFVWGIADQLRGVYKPHQYGGVILPFTVLRRLDCILEPTRDEVRALATKYADGALD 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           ++   +  G +FYNTS +    L       R NL  YI  FS N   +FE F F + +A 
Sbjct: 62  VQ-VKRKTGLAFYNTSPFDFKHLLEDPEGLRANLVDYITGFSANI-DVFERFKFENELAT 119

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   LY +   F+ ++LHPD V +  M +++EHLI +F    +E A +  TPRD + L
Sbjct: 120 LDEKNRLYLVTSQFADVDLHPDVVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIRL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL   D+A   E PG +RT+YDPT GTGG L+ A   + +     +    L  +GQE
Sbjct: 180 MVDLLFAEDNAALLE-PGTVRTIYDPTAGTGGMLSVAEERLLERNPDAR----LRLYGQE 234

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           +  +++A+C + M+ +  +         NI+ G TL++D F  + F +C+SNPP+G  W+
Sbjct: 235 INDQSYAICKSDMIAKGQD-------VGNIKLGDTLAEDQFFDRTFDFCMSNPPYGVDWK 287

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             ++AV+KE    +  RF  GLP + DG MLFL HLA+K+    +GGGRA IVL+ SPLF
Sbjct: 288 ASQEAVKKEAL-AQNSRFSHGLPAVGDGQMLFLSHLASKMRPKHDGGGRAGIVLNGSPLF 346

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           NG A SG S+IR+WLL++DL+EAI+ALPT++FF T IATY+WIL N K  ER GKVQLI+
Sbjct: 347 NGAAESGPSKIRQWLLKSDLVEAIIALPTNMFFNTGIATYIWILDNTKRPEREGKVQLID 406

Query: 427 ATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLRP 483
           AT  W+ +R   G K R ++   R +IL +Y + +     +S++     FGY  I V +P
Sbjct: 407 ATPFWSKMRKSLGAKSRELDAGARDRILALYDAYDEADPAYSKIFTSDDFGYWTITVEQP 466

Query: 484 LRMSF---ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           L       + D++G  + +      +  P       +        I  Y  AE       
Sbjct: 467 LLDEDGMPVTDRSGNPKPDTKKRDTENIPFTYGGNTEGEAGRTATIKAYFEAEVLPHVHD 526

Query: 541 KSNEAKTLKVKASKSFIVAFIN 562
              +AK  ++     F   F  
Sbjct: 527 AWIDAKKTRIGYEIPFTRHFYK 548



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 30/179 (16%)

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           + L    +         ++     Y  A+    +   S++     +   +  +       
Sbjct: 416 KSLGAKSRELDAGARDRILALYDAYDEADPAYSKIFTSDDFGYWTITVEQPLL------- 468

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVP 612
              D    PVTD +G   PDT   + EN+P+              +I+ YF  EV PHV 
Sbjct: 469 ---DEDGMPVTDRSGNPKPDTKKRDTENIPFTYGGNTEGEAGRTATIKAYFEAEVLPHVH 525

Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           DA+ID         +  R+GYEI F R FY+Y P R + +IDA+L+   A+I  LL  +
Sbjct: 526 DAWIDA--------KKTRIGYEIPFTRHFYKYVPPRPIAEIDADLEKQVAKIMELLRVV 576


>gi|226949373|ref|YP_002804464.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto]
 gi|226841985|gb|ACO84651.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto]
          Length = 571

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 203/541 (37%), Positives = 294/541 (54%), Gaps = 23/541 (4%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +    AN IW  A+ L G +K  ++G+VILP T++RR +C L  T+ +V +K    G  
Sbjct: 5   NNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNL 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +      K AGY FYN S++    L         N   YI  FS+N + I E F+F + 
Sbjct: 65  PMKDVFLCKEAGYDFYNISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQ 124

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I RL +  LLY + + F     +LHP  + +  M  I+E +IRRF    +E A    TPR
Sbjct: 125 ITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGYIFEEIIRRFSEAHNEDAGQHYTPR 184

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   +L   D  L   +  + +T+YDP CGTGG L+ A +++       +    L+
Sbjct: 185 EVIELMVNILFYNDSELLTGN--IAKTIYDPACGTGGMLSVAEDYLKKLNKDAE----LI 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE+  +T+A+C A MLI+   +D       NI+ G+TLS D F   R+ Y LSNPPF
Sbjct: 239 AFGQEINDQTYAICKADMLIKGANAD-------NIKNGNTLSDDQFKEDRYDYILSNPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G++W+ DK AVE E K G  GRFG G+P + DG MLFL     K++     G R AI+ +
Sbjct: 292 GREWKNDKKAVETEAKLGFAGRFGAGVPAVGDGQMLFLETAIAKMK---PQGSRIAIIHN 348

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K + R+GK
Sbjct: 349 GSPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGK 408

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLINA  L+   R   G KR  I  +   +I  +Y   +  + S++ D + FGY +I V
Sbjct: 409 VQLINANGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVV 468

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
            RP        +    +   D + R    +      DI +   +++ P+       ++  
Sbjct: 469 ERPKLKEDGTPELKKGKPVTDTSLRDTENV--PLKEDINEYFKREVIPFAPDAWIDEKKT 526

Query: 541 K 541
           K
Sbjct: 527 K 527



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 32/231 (13%)

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              + +       DI+ +     +  +L  +   YR+ KV        +++  GL     
Sbjct: 370 ENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGKVQ-------LINANGLYEKRR 422

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                K + + + +  +I K   +      + +S + +   + +    K+   +  +   
Sbjct: 423 KSLGNKRNDIPKEYIDEITKLYGE------FKKSEISKIFDNKDFGYSKIVVERPKLK-- 474

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIF 620
                       P     G+ + DT+L + ENVP  E I +YF REV P  PDA+ID+  
Sbjct: 475 --------EDGTPELK-KGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWIDE-- 523

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                 +  +VGYEI F R+FY+Y P +  ++++ E++ +E ++  +LEE+
Sbjct: 524 ------KKTKVGYEIPFTRYFYKYVPPKPAKELEMEIREIEMELDGVLEEI 568


>gi|303229050|ref|ZP_07315856.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516261|gb|EFL58197.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 574

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 203/523 (38%), Positives = 289/523 (55%), Gaps = 25/523 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+ IW  A+ L G +K  ++G+VILP T+LRR +C L  T+SAV + Y       +DL  
Sbjct: 11  ASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKSAVLDTYNKLKDQKLDLLD 70

Query: 72  --FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               +VAG+ FYN S+Y+  TL     N  +N   YI  FSDN + I   F F + I  +
Sbjct: 71  GLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHITTM 130

Query: 128 EKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               +LY + K F      LHPD + +  M  ++E +IRRF    +E A    TPR+V+ 
Sbjct: 131 ADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPREVIR 190

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L   DD        + RT+YD  CGTGG L+ A  ++A+  S  K    L+  GQ
Sbjct: 191 LMVNILF-HDDNAVLSGQNVARTIYDCACGTGGMLSVAEEYLANLNSTSK----LISFGQ 245

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +T A+C A MLI+  +++        I+ G+TLS D F+ + F Y +SNPPFG++W
Sbjct: 246 ELNDQTFAICKADMLIKGNDAE-------RIKSGNTLSDDQFSAETFDYIISNPPFGREW 298

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           + ++  V+ E K G  GRFGPGLP  +DG MLFL +   K+      G R AI+ + SPL
Sbjct: 299 KNEEAIVKNEAKLGFDGRFGPGLPSTADGQMLFLENAIKKM---NPQGARIAIIHNGSPL 355

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQL 424
           F G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K    R  KVQL
Sbjct: 356 FTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREEKVQL 415

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA DL+   R   G KR  I +   ++I  IY      + S++ D   FGY +I V RP
Sbjct: 416 INANDLYEKRRKSLGNKRNDIPESAIQEITKIYGEFRETEISKIFDNEDFGYTKITVERP 475

Query: 484 LRMSF--ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +       +   G  + +      ++ PL +       + ++ 
Sbjct: 476 VLDEDGKPVLVKGKPKADTKRRDTEIVPLKEDIETYFKREVLP 518



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D    PV  V G+   DT   + E VP  E I+ YF REV P  PDA+I        D +
Sbjct: 478 DEDGKPVL-VKGKPKADTKRRDTEIVPLKEDIETYFKREVLPFAPDAWI--------DTK 528

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             ++GYEI F R FY+Y   R   +I AE+K +E+ +   L E+
Sbjct: 529 KNKIGYEIPFTRHFYKYVAPRLSDEIMAEIKALESDLDGALIEV 572


>gi|189485040|ref|YP_001955981.1| type I restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170286999|dbj|BAG13520.1| type I restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 570

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 211/581 (36%), Positives = 320/581 (55%), Gaps = 24/581 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S +  ANFIW  A+ L GDFK +++G+VILPFT+LRR +C L P +  + E       +N
Sbjct: 3   SFSDKANFIWSVADLLRGDFKQSEYGRVILPFTVLRRFDCVLAPHKDRILEINKTLTVTN 62

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                F +  GY +YN S++S   L   S     NL  YI+ FSD+ +AI ++F+   TI
Sbjct: 63  -KAPVFKRCTGYDYYNISKFSFEKLRDDSNAVETNLRDYISGFSDDIRAILDNFEIGITI 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL+KA LLY I + F+ ++L   ++ +  M  ++E LIR+F  + +E A +  TPR+V+
Sbjct: 122 KRLKKANLLYLIVQKFAELDLDEKSIDNLTMGYMFEDLIRKFSEKSNETAGEHFTPREVI 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   LLL+ D  +      +I  +YDP CGTGG LT A   + +     K+    +P G
Sbjct: 182 ELMVDLLLEEDGDILNTEGKVI-KVYDPACGTGGMLTAAQKKLQEYNGKIKV----IPFG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL PET+A+C + M I+        +    I  G++ S+D F  ++F Y LSNPPFG +
Sbjct: 237 QELNPETYAICKSDMSIKG-------NSQAGIVLGNSFSEDGFKDEKFDYMLSNPPFGVE 289

Query: 305 WEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+K +  +  E  K G  GRFG G P+ISDGS+LFL ++ +K+    +GG R AIV + S
Sbjct: 290 WKKVQSFILDEAEKQGFNGRFGAGTPRISDGSLLFLQNMISKMIPQKDGGSRIAIVFNGS 349

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSGESEIR+W++END +EA++ LP  LF+ T IATY+WILSNRK++ R+GK++
Sbjct: 350 PLFTGDAGSGESEIRKWIIENDFLEAVIGLPDQLFYNTGIATYIWILSNRKSDRRKGKIR 409

Query: 424 LINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           L+N    +  +R   G KR  I+D  R  ++++Y   E  +     D   FGY++I + R
Sbjct: 410 LVNGVSFFEKMRKSLGNKRNEISDKSRNALVNLYSMHEPDENYIDFDNSDFGYKKITIDR 469

Query: 483 PLRMSF---ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE- 538
           PL        LDK G  +  A++   +  PL +       + ++  +      ES  K  
Sbjct: 470 PLYDKDGKPELDKKGNKKPNAELRDIETVPLKEDVNEYFKREVLPYVPGAWIDESKTKTG 529

Query: 539 ---SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
                  +  K + +++S+  +          D     +  
Sbjct: 530 YEIPFTRHFYKFVPLRSSQEIMKEIECLKKDIDEAFQELIK 570



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
            D    P  D  G   P+  L + E VP  E + +YF REV P+VP A+ID+        
Sbjct: 472 YDKDGKPELDKKGNKKPNAELRDIETVPLKEDVNEYFKREVLPYVPGAWIDE-------- 523

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
              + GYEI F R FY++ P R  Q+I  E++ ++  I    +E+ 
Sbjct: 524 SKTKTGYEIPFTRHFYKFVPLRSSQEIMKEIECLKKDIDEAFQELI 569


>gi|171915568|ref|ZP_02931038.1| type I restriction-modification system methyltransferase subunit
           [Verrucomicrobium spinosum DSM 4136]
          Length = 591

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 204/582 (35%), Positives = 308/582 (52%), Gaps = 29/582 (4%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M         LAN +W+ A+ L G +    + +V+LP T+LRR +C L  T++ V  ++ 
Sbjct: 1   MVGLMPDHHDLANLVWQIADLLRGPYTPPQYERVMLPMTVLRRFDCVLARTKAKVLAEHS 60

Query: 61  AFGGSNID----LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAI 114
                 +      +   K AG  F+N S      L   S N   +L SYI  FS N + I
Sbjct: 61  RRKDGKVQGDGLDQLLNKAAGQRFHNRSPLDFDKLKGDSDNIEKHLVSYIKGFSANVRTI 120

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F+ F+F   I ++ ++ LLY I   FS ++L P  V    M  I+E+LIRRF  + +E A
Sbjct: 121 FDYFEFEKEIEKMRESNLLYLIVSKFSEVDLDPVRVRSEEMGLIFENLIRRFYEQANETA 180

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            D  TPR+V+ L   LL   DD L   +PG +R L DP CGTGG L +A N++ +    H
Sbjct: 181 GDHFTPREVIRLMAGLLFINDDDLLS-TPGAVRKLLDPACGTGGMLAEAQNYMRE----H 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                L  +GQ+      A   + MLI+ +  +   D   N++ G   + D F  + F Y
Sbjct: 236 HAAAQLYTYGQDYNKRAFATAASEMLIKEVAHNGSGD---NVRFGDIFTDDRFKDETFDY 292

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK----LELPP 350
            ++NPPFG  W+K +  V +EH +G+ GRF  GLP+++DGS+LF+ H+ +K    L    
Sbjct: 293 VIANPPFGVDWKKQQREVVREHDSGK-GRFNAGLPRVNDGSLLFVQHMISKFEPVLPHLE 351

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R A+VLS SPLF G AGSGESEIR+W++E+D +EAI+ALP  +F+ T I TY+W+L
Sbjct: 352 KHGSRMAVVLSGSPLFTGGAGSGESEIRKWIIESDWLEAIIALPEQMFYNTGIGTYIWLL 411

Query: 411 SNRKTEERRGKVQLINATDLW------TSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           +NRK + R+GK++L++A   W       + R+ G KRR I+  Q  QIL +Y  R++G+ 
Sbjct: 412 TNRKEKRRKGKIRLVDARSFWKPGGSEENRRSLGDKRRHISAAQIEQILKLYDHRQDGEH 471

Query: 465 SRMLDYRTFGYRRIKVLRPLRMS---FILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
           S+  D   FGY R+ V RPL+        DK G  + +A +   +  PL +       + 
Sbjct: 472 SKTFDNADFGYTRVTVERPLQDEAGVIQKDKHGKPKPDAKLRDFENIPLKEDINAYFKRE 531

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
           ++  + P  W +    +            K +    +A I+A
Sbjct: 532 VLPHV-PDAWMDRSKDKVGYEINFNRHFYKFTPPRDLAEIDA 572



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/107 (41%), Positives = 62/107 (57%), Gaps = 8/107 (7%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D       D +G+  PD  L ++EN+P  E I  YF REV PHVPDA++D+         
Sbjct: 493 DEAGVIQKDKHGKPKPDAKLRDFENIPLKEDINAYFKREVLPHVPDAWMDR--------S 544

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
             +VGYEINFNR FY++ P R L +IDAE++  E +   L +E+  +
Sbjct: 545 KDKVGYEINFNRHFYKFTPPRDLAEIDAEIEIAEKEFMRLFKEVTLQ 591


>gi|282849444|ref|ZP_06258829.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745]
 gi|282581148|gb|EFB86546.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745]
          Length = 574

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 205/523 (39%), Positives = 292/523 (55%), Gaps = 25/523 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+ IW  A+ L G +K  ++G+VILP T+LRR +C L  T+ AV + Y      ++DL  
Sbjct: 11  ASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKPAVLDTYNKLKDQDLDLLD 70

Query: 72  F--VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               +VAG+ FYN S+Y+  TL     N  +N   YI  FSDN + I   F F + I  +
Sbjct: 71  GLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHITTM 130

Query: 128 EKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               +LY + K F      LHPD + +  M  ++E +IRRF    +E A    TPR+V+ 
Sbjct: 131 ADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPREVIR 190

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L   DD        + RT+YD  CGTGG L+ A  ++A+  S  K    L+  GQ
Sbjct: 191 LMVNILF-HDDNAVLSGQNVARTIYDCACGTGGMLSVAEEYLANLNSTSK----LISFGQ 245

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +T A+C A MLI+  +++        I+ G+TLS D F+G+ F Y +SNPPFG++W
Sbjct: 246 ELNDQTFAICKADMLIKGNDAE-------RIKSGNTLSDDQFSGEIFDYIISNPPFGREW 298

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           + ++  V+ E K G  GRFGPGLP  SDG MLFL +   K+      G R AI+ + SPL
Sbjct: 299 KNEEAIVKNEAKLGFDGRFGPGLPSTSDGQMLFLENAIKKM---NPQGSRIAIIHNGSPL 355

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQL 424
           F G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K    R GKVQL
Sbjct: 356 FTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREGKVQL 415

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA DL+   R   G KR  I +   ++I  IY      + S++ D   FGY +I V RP
Sbjct: 416 INANDLYEKRRKSLGNKRNDIPESATQEITKIYGEFRETEISKIFDNEDFGYTKITVERP 475

Query: 484 L--RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +       +   G  +++      ++ PL +       + ++ 
Sbjct: 476 VLDENGKPVLVKGKPKVDTKRRDSEIVPLKEDIETYFKREVLP 518



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D    PV  V G+   DT   + E VP  E I+ YF REV P  PDA+I        D +
Sbjct: 478 DENGKPVL-VKGKPKVDTKRRDSEIVPLKEDIETYFKREVLPFAPDAWI--------DTK 528

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
             ++GYEI F R FY+Y   R   +I AE+K +E+ +   L E+
Sbjct: 529 KNKIGYEIPFTRHFYKYVAPRPSGEIMAEIKALESDLDGALVEV 572


>gi|38505784|ref|NP_942403.1| type I restriction-modification system M subunit [Synechocystis sp.
           PCC 6803]
 gi|38423808|dbj|BAD02017.1| type I restriction-modification system M subunit [Synechocystis sp.
           PCC 6803]
          Length = 499

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/537 (31%), Positives = 272/537 (50%), Gaps = 61/537 (11%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             + +  M  I+E LIRRF  E ++ A +  TPRDVV L   L+      L +    +  
Sbjct: 11  SALDNHSMGTIFEELIRRFNEENNDEAGEHFTPRDVVKLMADLIFLSIGDLIESGTYL-- 68

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YD  CGTGG LT A   +A+   +      +   GQE++PET+A+  A +L++   ++
Sbjct: 69  -VYDGACGTGGMLTVAEERLAELAQNQGKEVSIHLFGQEVQPETYAISKADLLLKGEGAE 127

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFG 325
                  N++ GSTLS D F  + F + LSNPP+GK W+ D + +  + + K+       
Sbjct: 128 AE-----NMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDLERLGGKGDIKDPRFVTRH 182

Query: 326 ------PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   + + SDG ++FL++   K++     G R A V + S LF G AG GES IRR
Sbjct: 183 GDEADYKMITRSSDGQLMFLVNKLAKMKHNTRLGSRIAEVHNGSSLFTGDAGQGESNIRR 242

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEG 438
           W++END +E I+ALP ++F+ T IATY+W+LSNRK EERRGKVQLI+ T+ +  + RN G
Sbjct: 243 WIIENDWLETIIALPENIFYNTGIATYIWLLSNRKNEERRGKVQLIDGTEWYVPLRRNLG 302

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           KK   ++++Q + I+D+ V+    + S++   + FGY ++ V RPLR+    D   + + 
Sbjct: 303 KKNCELSEEQIQTIVDLVVNPRETEKSKIFPNQAFGYWKVTVDRPLRVEG-ADPQRVYKA 361

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
                ++    + +     I K   +   P                              
Sbjct: 362 AEIKAFKSEGRVTEEGVPIIKKIHKKGTRPDP---------------------------- 393

Query: 559 AFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPDAYI 616
             I+     +    P      E+ PD+NL + E +P LE   I+ +F REV P+ PDA+I
Sbjct: 394 --IHGLFEVEIGGKPCV---VEYEPDSNLRDSEQIPLLEDGGIEAFFRREVLPYTPDAWI 448

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +            ++GYE++F R FY+  P R L +I A++  +E +   LLE++  
Sbjct: 449 EA--------SKTQIGYEVSFTRHFYKPVPMRTLDEIKADIYALEQETEGLLEQIVG 497


>gi|319957036|ref|YP_004168299.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
 gi|319419440|gb|ADV46550.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
          Length = 599

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 212/585 (36%), Positives = 313/585 (53%), Gaps = 60/585 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT F       A+ IW  A  L GD+K +D+GKVILP T+LRRL+  L PT+  V     
Sbjct: 1   MTNFKQK----ADLIWDIAGLLRGDYKRSDYGKVILPLTVLRRLDAVLAPTKEKVLAALP 56

Query: 61  AFGGSNIDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
                + + +     K+AGY+F+N S +  + +     N   NL +YI  FS NA+ I E
Sbjct: 57  RVEKMSENAKDLYLNKIAGYNFHNRSRFDFAKIVADPNNVAMNLRNYINGFSSNAREIIE 116

Query: 117 DFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            F+F   I R++  K+ LLY++ K F+ +    D V    M  I+E LIR+F  + +E A
Sbjct: 117 YFNFDDQIDRMDDPKSDLLYQVVKAFAEMPF--DDVDSMQMGYIFEELIRKFAEQSNETA 174

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   LL + D  +FKE   +++TLYDP CGTGG L+   NH+       
Sbjct: 175 GEHFTPREVIELMVNLLFNSDREIFKEG--IVKTLYDPACGTGGMLSIGENHIKRLNPDA 232

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K+       GQE+ PE++A+C +  LI+        +   NI+ G+T + D    ++F Y
Sbjct: 233 KLE----LFGQEINPESYAICKSDTLIKG-------ENPSNIKFGNTFTVDGLRDEKFDY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K    ++ E++N G  GRFG GLP+I+DGS+LFL H+ +K++     G
Sbjct: 282 MLSNPPFGVEWKKAAKTIKAEYENLGFAGRFGAGLPRINDGSLLFLQHMISKMK---PEG 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R  IV + SPLF G+AGSGES IRRW++END +EAIVALP  LF+ T IATY+W+L+N+
Sbjct: 339 SRIGIVFNGSPLFTGQAGSGESNIRRWIIENDWLEAIVALPDQLFYNTGIATYIWVLNNQ 398

Query: 414 KTEERRGKVQLINAT----------------DLWTSIRN---EGKKRRIINDDQ--RRQI 452
           K  + RGK+QLINAT                  W  +     + +KR   NDD+     I
Sbjct: 399 KDAKCRGKIQLINATGSKDEALMEEGKRDFNRFWEKMPRSLGDKRKRIPTNDDERGINYI 458

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR---MSFILDKTGLARLEADITWRKLSP 509
             +Y   E G+F ++     FGY R+ V RPLR    + + D  G  + + ++   +  P
Sbjct: 459 TKLYGEFEEGEFVKIFPNDYFGYWRVTVERPLRDEAGNIVTDTKGRPKPDKELRDTENIP 518

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                   + +     + P    E F +E +       +    +K
Sbjct: 519 -------FLREDEEGNLVPQSIEEYFEREVLPHVPDAWIDESKTK 556



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 18/115 (15%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPY----------LESIQDYFVREVSPHVPDAYI 616
           +D   + VTD  G   PD  L + EN+P+           +SI++YF REV PHVPDA+I
Sbjct: 491 RDEAGNIVTDTKGRPKPDKELRDTENIPFLREDEEGNLVPQSIEEYFEREVLPHVPDAWI 550

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           D+           ++GYEINF+++FY+++P R L  I A++  +E     L  ++
Sbjct: 551 DE--------SKTKIGYEINFDKYFYEFKPLRSLDAIRADILALEESSRELERQV 597


>gi|302037815|ref|YP_003798137.1| putative type I restriction-modification system, N-6
           adenine-specific DNA methylase [Candidatus Nitrospira
           defluvii]
 gi|300605879|emb|CBK42212.1| putative Type I restriction-modification system, N-6
           adenine-specific DNA methylase [Candidatus Nitrospira
           defluvii]
          Length = 658

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 198/687 (28%), Positives = 308/687 (44%), Gaps = 67/687 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF--GGSNI 67
           +LA+ IWK+AE L G FK  ++  VILP  ++RRLEC L   R     +  A     +  
Sbjct: 12  NLADEIWKSAERLRGKFKAYEYQNVILPIIVIRRLECVLIKWREDKTTEVRAKRPKLTEK 71

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG------STNTRNNLESYIASFSDNAKAIFEDFDFS 121
           +L   VK    +    S  +  TL        T        YI  FS N   I + F++ 
Sbjct: 72  ELAKLVKGLELTTAPFSNKTNLTLRKVYEEEPTLLDQTFRKYINGFSKNVDDIIDHFNYR 131

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +TI ++ K   L  I   +  + L P  +    M  +YE L+RRF  +  E A +  TPR
Sbjct: 132 NTIGQMVKNNRLAPILNQYKELPLGPAQLSPLEMGYVYEELLRRFSEQSGEEAGEHFTPR 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIP 237
           +++ L   LL  P       +P    ++YDP CGTGG L+ A  H+ D          + 
Sbjct: 192 EIIRLMVELLEIP-------TPERHISIYDPACGTGGMLSVAKEHLLDRAATEQQRANVE 244

Query: 238 PILVPHGQELEPETHAVCVAGMLIRR-------LESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +  HGQEL P  +A+C A +LI+        L +       ++ + G  L +  F   
Sbjct: 245 QFVTVHGQELSPTNYAICQADLLIKNDRQAKVHLGNSLIPHDPRSKEPGDQLPESTF--- 301

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF + LSNPPFG  W   KD  E E +  +  R+  G+P+++DG++LFL  +  K++ P 
Sbjct: 302 RFDFMLSNPPFGVTWGG-KDGYETEARKLQGTRYKAGMPRVNDGALLFLQTMLAKMKEPE 360

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            G  R AI+ + SPL NG  GSGESEIRRW+LEND ++ IV LP  LF+ T I TY+W+L
Sbjct: 361 KGASRLAIIFNGSPLSNGDCGSGESEIRRWILENDWLDCIVMLPDQLFYNTGIFTYIWLL 420

Query: 411 SNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFS---- 465
            N K    + KV LI+A   +    ++ G KR  I D  R  I   Y       F+    
Sbjct: 421 RNDKPASHKDKVMLIDARQQYEKEPKSFGNKRNRITDAHRLWIESRYHDGWKDGFADEHV 480

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           ++     F Y ++ V+     S   D+  +     + ++                 + ++
Sbjct: 481 KLFHREDFAYHKVSVV--FWQSDDQDQPAIVTEPYEKSFTAA-------------NIKKE 525

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKAS-KSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
              Y     F     +  + +   +    K        A     P    V     EW   
Sbjct: 526 QEFYDSELIFRVRIKEGRKEQIATLSLGPKDNATKVFKALMTNGPEILTV-----EWTHR 580

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
             + + E +P+ E+I+ +  RE         I +  I  +D    ++GYEI  N++FY+Y
Sbjct: 581 HYVKDDEYIPHGENIEAFLKRE---------IARPIILWEDSP--QLGYEILPNKYFYKY 629

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
            P    +++ AE   +E +   +L+ +
Sbjct: 630 MPPTPAKELLAEFWRLEKEAEKMLKGL 656


>gi|145642019|ref|ZP_01797591.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|145273290|gb|EDK13164.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.4-21]
          Length = 658

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 197/680 (28%), Positives = 299/680 (43%), Gaps = 157/680 (23%)

Query: 127 LEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLIRRFGSEVSEG 173
           +    +L  + + F    I L P    D             M  ++E LIR+F  E +E 
Sbjct: 1   MSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELIRKFNEENNEE 60

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-- 231
           A +  TPR+V+ L T L+ DP     K     I T+YDP CG+GG LT++ N +      
Sbjct: 61  AGEHFTPREVIELMTHLVFDP----LKSQIPAIITIYDPACGSGGMLTESQNFIEQKYPL 116

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL+ D F G  
Sbjct: 117 SESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTLATDSFQGNH 169

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISDGSMLF 338
           F + LSNPP+GK W KD+  + K+       RF                 P+ SDG +LF
Sbjct: 170 FDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDATPRSSDGQLLF 228

Query: 339 LMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+EAIV LP +
Sbjct: 229 LMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLLEAIVQLPNN 288

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K      +   +I   
Sbjct: 289 LFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFAPEHIAEITQN 348

Query: 456 YVSR------------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-- 501
           Y+              E G  S++ D + FGY ++ + RP R S       +  L  D  
Sbjct: 349 YLDFTAKAREIDSQNEEVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIEPLRFDKA 408

Query: 502 ---------------------------------------------------ITWRKLSPL 510
                                                               TW K + L
Sbjct: 409 LFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAAL 468

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            Q+    +     QQ + +   +  V+  +K+      K+  S +   A  NA    +  
Sbjct: 469 FQTASKLLKHFGEQQFHDFNQFKQAVECRLKAE-----KIPLSATEKKAVFNAVSWYNEN 523

Query: 571 ADPVTDVN---------------------------------GEWIP---DTNLTEYENVP 594
           A  V                                     GE+I     ++L + E++P
Sbjct: 524 AAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYATGKAGEYIQYETSSDLRDSESIP 583

Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
             ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R L ++ 
Sbjct: 584 LKQNIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRHKPLRSLAEVA 635

Query: 655 AELKGVEAQIATLLEEMATE 674
            ++  +E Q   L+ E+  E
Sbjct: 636 QDILALEKQADGLISEILGE 655


>gi|310826742|ref|YP_003959099.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612]
 gi|308738476|gb|ADO36136.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612]
          Length = 597

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 201/677 (29%), Positives = 299/677 (44%), Gaps = 107/677 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +    AN IW  A  L+G +K  ++G VILP  +++R    L PTR  V   Y      
Sbjct: 12  TNIQEKANLIWNVANSLFGAYKPHEYGLVILPMVVIKRFHDCLLPTREKVLATYEKVKQL 71

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +        +GY FYNTS+Y+   L +   N + N E+YI  FSDN   I  +  F + 
Sbjct: 72  AVKDGFLRTASGYRFYNTSQYTFERLKADPENIKTNFEAYINGFSDNVIDILANMGFFTQ 131

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I R+  AG+LY++  +F     +++P+ +    M  ++E+L++ F     E A    T R
Sbjct: 132 IERMADAGVLYQVISDFTADNADMNPEKISAIDMGYVFENLVQCFSESYDEEAGAHFTSR 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+++L   LL    D   +++P   +T+YD   GT   LT     V       +    ++
Sbjct: 192 DIIYLMCDLLTMNADFSGEDAPA--KTVYDMAMGTSQMLTCMEERVHALDKEAE----II 245

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE+ P T  +  A MLIR  + +       N+Q G TL+ D F G  F Y +SNPPF
Sbjct: 246 CYGQEINPFTFGIAKADMLIRGGDPE-------NMQFGDTLNADKFKGYTFDYIISNPPF 298

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G  W+++   VEKEHK G+ GRFG GLP+ SDG MLFL++   KL+      GR AI+ +
Sbjct: 299 GIDWKREAADVEKEHKLGDAGRFGVGLPQKSDGQMLFLLNGIAKLK----DTGRMAIIQN 354

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            S LF G AGSG SEIRR+++END ++AIV LP D F+ T I                  
Sbjct: 355 GSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGI------------------ 396

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQIL-----DIYVSRENGKFSRMLDYRTFGYR 476
                AT +W   +N+        +  R +IL         +R     ++ +D       
Sbjct: 397 -----ATYIWIVSKNKP-------ETHRERILLIDASKCCEARRRPIGNKRVDITESCRN 444

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            I        S I  KT                L     +   K  +      G+ +  V
Sbjct: 445 LITQAYSEYRSAIFTKT----------------LEDKKTVLTCKSKVLDAISLGYNKITV 488

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           +                              D   +P+    G+ + DT+  + E+VP  
Sbjct: 489 ESPAL--------------------------DDDGNPIVK-KGKPVADTSKRDTESVPLD 521

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           E +  YF REV P+ P A+I        DK   +VGYEI F R FY+Y+      DI   
Sbjct: 522 EDVDAYFAREVLPYRPGAWI--------DKSKTKVGYEIPFTRTFYEYEELEPAADIAKR 573

Query: 657 LKGVEAQIATLLEEMAT 673
           +   E  +   L+ +  
Sbjct: 574 IAAREKVLMEKLQALFG 590


>gi|71900229|ref|ZP_00682367.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71730002|gb|EAO32095.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 819

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 180/542 (33%), Positives = 281/542 (51%), Gaps = 41/542 (7%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 27  MQKTQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 86

Query: 57  EKYLAFGGSN--IDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDN 110
           E+       N      +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 87  ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 146

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++   +P              +  M 
Sbjct: 147 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 206

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 207 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTY---SLYDGSCGT 263

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++   ++    +    
Sbjct: 264 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGAD 323

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPG 327
           +  STLS D F  + F + +SNPP+GK W+ D D +  + K  +  RF            
Sbjct: 324 K--STLSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGKKKFSD-PRFIVSHGGDSEFKL 380

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +
Sbjct: 381 LTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWL 440

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND 446
           EAI+ALP ++F+ T IATY+W+L+N+K + RRGKVQLI+A+  +  + RN GKK   +  
Sbjct: 441 EAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGA 500

Query: 447 DQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
               +ILD+Y+ + +    S+  D + FGY +I + RPLR+   L    +  L       
Sbjct: 501 ADIARILDLYLGQTQEAAQSKWFDTQDFGYLKITIERPLRLKSQLSDERIESLRFATGEE 560

Query: 506 KL 507
            L
Sbjct: 561 AL 562



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 42/210 (20%)

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552
               +L    TW++         +++ +   Q +    + +     +      K    + 
Sbjct: 621 KRRKKLLDASTWQR-----DKALMEVAQRAQQALGRAVFDDHNAFCAGFDAVCKAQDARL 675

Query: 553 SKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDT 585
           S     A   A   +D  A PV                                E+ PD+
Sbjct: 676 SAPEKKAIYKAVSWRDDAALPVIAKRSKLNAGECFEPGFDGAYLETVGKDRFMVEYEPDS 735

Query: 586 NLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
            L + E VP  E   I  +F REV PH PDA+I          +  ++GYEI+F R+FY+
Sbjct: 736 ALRDTEQVPLQEPGGIDAFFAREVLPHAPDAWIA--------TDKTQIGYEISFARYFYK 787

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             P R L +I A++  +E Q   LL ++ +
Sbjct: 788 PVPLRTLAEIRADILALEQQTEGLLHKIVS 817


>gi|33240158|ref|NP_875100.1| Type I restriction-modification system methyltransferase subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237685|gb|AAP99752.1| Type I restriction-modification system methyltransferase subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 580

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/546 (36%), Positives = 304/546 (55%), Gaps = 29/546 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L+ FIW  AE L  ++K +D+G+VIL FT+LRR++C LE  +  V EK  +    ++ 
Sbjct: 4   KNLSAFIWSVAELLRDNYKKSDYGQVILAFTVLRRIDCVLEAEKRGVCEKRTSHKAPSLK 63

Query: 69  LESF-VKVAGYSFYNTSEYSLS--TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            ++F +     +  + S   L    L   +   N+ +YI SFS   K IFE F+F + I 
Sbjct: 64  SKAFRLNQPDVNSCSPSLLGLKEIILDEGSISKNINAYIQSFSPTIKGIFESFEFETHID 123

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL K  LL ++ + F+ I+LHP T+ +  M  I+E LIR+F    ++   +  TPR+V++
Sbjct: 124 RLNKTNLLSQVTRKFTLIDLHPTTISNTEMGTIFEELIRKFAELSNDIQGEHFTPREVIN 183

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   D         +++++YDPT GTGG L+ A  H+       K    L+  GQ
Sbjct: 184 LMVNLLFSKDKEALLAE-DIVKSIYDPTAGTGGMLSVAEEHIKAINPSAK----LIVSGQ 238

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ PE++A+C A MLIR  + +       NI  G+TLS D    K++ Y LSNPPFG  W
Sbjct: 239 EINPESYAICKADMLIRGQDIN-------NICLGNTLSHDHHAKKKYDYMLSNPPFGVDW 291

Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V+KE+++ G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVLS SP
Sbjct: 292 KKVQKEVKKEYRDKGFSGRFGPGLPRVSDGSLLFLMHLISKMLPASKGGSRIGIVLSGSP 351

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           +F G AGSGESEIRR++LEND +EAI+ LP +LF+ T I+TY+WI++N+K   R+GKVQL
Sbjct: 352 MFTGSAGSGESEIRRYVLENDYVEAIIQLPQELFYNTAISTYIWIITNKKESSRKGKVQL 411

Query: 425 INATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYRRI 478
           I+ +     +R   G KR+ + D++  +I  I+ S +  K       R+L     GY+ I
Sbjct: 412 IDCSTFSKKMRKSLGSKRQELRDNEISEITKIFNSFKEVKTEGKSICRILKTEELGYKLI 471

Query: 479 KVLRPLR-------MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            V RP +               G  + + ++   +  PL +       + ++        
Sbjct: 472 TVDRPKKDIKGNVITIRKGKYKGSTQFDPELRDTESIPLSEPVDSYFKREILTHYPDAWI 531

Query: 532 AESFVK 537
            E   K
Sbjct: 532 NEDKTK 537



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 34/245 (13%)

Query: 436 NEGKKRRIINDDQRRQIL----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
               +R ++ +D    I+    +++ +     +  ++  +    R+ KV        ++D
Sbjct: 361 ESEIRRYVLENDYVEAIIQLPQELFYNTAISTYIWIITNKKESSRKGKVQ-------LID 413

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            +  ++        K   L  +   +I K            +S     +K+ E     + 
Sbjct: 414 CSTFSKKMRKSLGSKRQELRDNEISEITKIFNSFKEVKTEGKSIC-RILKTEELGYKLIT 472

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIP----DTNLTEYENVPYLESIQDYFVREV 607
             +           +KD + + +T   G++      D  L + E++P  E +  YF RE+
Sbjct: 473 VDRP----------KKDIKGNVITIRKGKYKGSTQFDPELRDTESIPLSEPVDSYFKREI 522

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
             H PDA+I++        +  ++GYEI FNR+FY +   R L+ I+ EL+ +    +TL
Sbjct: 523 LTHYPDAWINE--------DKTKIGYEILFNRYFYNFPKIRSLEKINQELRDLFKVFSTL 574

Query: 668 LEEMA 672
            +++ 
Sbjct: 575 SKQII 579


>gi|322379477|ref|ZP_08053843.1| Putative type I restriction-modification system HsdM subunit
           [Helicobacter suis HS1]
 gi|322380458|ref|ZP_08054657.1| type I restriction enzyme M protein [Helicobacter suis HS5]
 gi|321147103|gb|EFX41804.1| type I restriction enzyme M protein [Helicobacter suis HS5]
 gi|321148084|gb|EFX42618.1| Putative type I restriction-modification system HsdM subunit
           [Helicobacter suis HS1]
          Length = 636

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/684 (29%), Positives = 334/684 (48%), Gaps = 84/684 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               + NFIW  A  L   +K   +  VILP T++RRL+  LEPT+  V  KY       
Sbjct: 20  QFQPIINFIWDIANLLRDHYKRGKYRDVILPMTVIRRLDAILEPTKQKVLAKYKECKEKG 79

Query: 67  -----IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
                I+       +G+ FYN S+++L TL     N ++N ++Y+ SFS   K I + F+
Sbjct: 80  LLEKGIEAPLLCDASGFKFYNHSQFTLKTLLDDPENLKDNFKNYLNSFSATIKDILKKFN 139

Query: 120 FSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDR------VMSNIYEHLIRRFGSEVS 171
           F + +  LE+AG+L+K+   F  + +     +  D+       M  ++E LIR+F  E +
Sbjct: 140 FETELDTLEQAGVLFKLVDKFCSNKVNFSIKSTSDKPGLSNLGMGYVFEELIRKFNEENN 199

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           E A +  TPRD++ L   L+  P      E    +  +YD  CG+GG LT++   + +  
Sbjct: 200 EEAGEHFTPRDIISLMATLIFKP----ISEQLNSVYFVYDNACGSGGMLTESKAFIKNLQ 255

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +I      +GQE+ PET+A+C A MLI+        +  +NI+ GSTLS D F   +
Sbjct: 256 PTAEIN----LYGQEVNPETYAICKADMLIKG-------ENPENIKFGSTLSDDQFKDLK 304

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + L+NPPFGK +  +++  + +       RF  GL  + DG M+FL+++ +K++  P 
Sbjct: 305 FDFMLTNPPFGKSYGNEQEKCKND------SRFAVGLTGVGDGQMMFLLNMISKMKDTP- 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R A + + S LFN    SG+  IR  ++  D +EAI+ALPTDLF+ T I T++WIL+
Sbjct: 358 LGSRIASIHNGSALFNSD--SGQVAIRSHIITKDYLEAIIALPTDLFYNTQIPTFIWILN 415

Query: 412 NRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           NRK   ++ KVQLI+AT  +  + ++ GKK + ++ +    I +++  +  G  + +LD 
Sbjct: 416 NRKEAHKKQKVQLIDATSYFEPMAKSLGKKSKRLSQEHIDAIFELFSKQIKGPQAVVLDC 475

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
              GY +  V+       + D + L   EA +                            
Sbjct: 476 EDLGYTKFNVISLKSSQEVKDDSELINKEAIL---------------------------- 507

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA-DPVTDVNGEWIPDTNLTE 589
                  + ++  EA   K++        F+NA     P+  +P   ++ +     N +E
Sbjct: 508 -------KRLEQLEANPPKLEPIFKDEKTFLNALNIPIPKKTNPEGKISKDLKILLNKSE 560

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E +P  E    YF+ E+   +      +  I     +  +VGYEI FN+ FY+   ++ 
Sbjct: 561 -EKIPLKEDKDTYFL-ELLEQI------RPQIGFIKGQSIKVGYEILFNQHFYRPTEAKS 612

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
            + I  E++ +E +I  LL+E+  
Sbjct: 613 ARTIQQEIRELEGEIQELLDEILA 636


>gi|228930125|ref|ZP_04093135.1| Type I restriction enzyme, M protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829624|gb|EEM75251.1| Type I restriction enzyme, M protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 594

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 207/576 (35%), Positives = 298/576 (51%), Gaps = 43/576 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T +    AN IW  A+ L G +K  ++GKVILP T+++RL   L PTR AV +     
Sbjct: 9   QTTINVQKQANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLMPTREAVLKASEQC 68

Query: 63  GGSNIDLES--FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
              N  + +    K AGYSFYNTS Y+  TL     N   N  +Y+  FSDN + I  +F
Sbjct: 69  KDMNDTMRNRMLEKAAGYSFYNTSLYTFETLLADPANIETNFRAYLNGFSDNMQDILANF 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F   I  + +   L+ + + F+  E  L PD V    M  ++E L+R+F    +E A  
Sbjct: 129 KFDIEITNMAENDALFYVIQEFNKKESYLGPDKVTSTDMGYVFEELVRKFSESYNEEAGA 188

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RDV++L T LLL  D         +++T+YD T GT   L+  +  + D     ++
Sbjct: 189 HFTSRDVIYLMTDLLLAEDRETLT-GQNVVKTVYDQTMGTSQMLSAMIERIHDFNKGAEV 247

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQEL PET+A+  A  +IR    D       N+  GSTLS D F G  F YC+
Sbjct: 248 ----ATFGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSNDQFEGYTFDYCI 296

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W+KDK +VE+EH+ GE GRFG GLP I DG +LF ++  +KL+      GR 
Sbjct: 297 SNPPFGIDWKKDKKSVEEEHQKGENGRFGVGLPTIKDGQLLFQLNGLSKLK----ETGRM 352

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV + S LF+G+AG GES IR++++ ND +EAIV LPTDLF+ T I+TY+WIL+  K+ 
Sbjct: 353 AIVHNGSALFSGKAGGGESAIRQYVIGNDWLEAIVQLPTDLFYNTGISTYVWILTKNKSA 412

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------SRM 467
            R+GKVQLI+A+ ++   R     +R+ IN++ R  I+  Y    N ++        S++
Sbjct: 413 ARQGKVQLIDASKMFEKRRKNIGNKRVDINEECRNMIVQAYGEFANKEYYVDDTVVESKV 472

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQI 526
            D   FGY ++ V  P R             E +I  +K  P+  +   D    P+ + +
Sbjct: 473 FDNLDFGYVKVTVESPQRDE-----------EGNIILKKNKPVADTSLRDTEDIPLKEDV 521

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
             Y   E          + K  K+     F   F  
Sbjct: 522 QTYFEREVLTFNPDAWMDRKKDKIGYEIPFTRLFYK 557



 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 9/109 (8%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           ++D   + +   N + + DT+L + E++P  E +Q YF REV    PDA++D+       
Sbjct: 489 QRDEEGNIILKKN-KPVADTSLRDTEDIPLKEDVQTYFEREVLTFNPDAWMDR------- 540

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            +  ++GYEI F R FY+Y        I   +K +E  I    E ++ +
Sbjct: 541 -KKDKIGYEIPFTRLFYKYTAPEPSDLIAERIKKLEESILANFEVLSGK 588


>gi|28199932|ref|NP_780246.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182682686|ref|YP_001830846.1| N-6 DNA methylase [Xylella fastidiosa M23]
 gi|28058063|gb|AAO29895.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182632796|gb|ACB93572.1| N-6 DNA methylase [Xylella fastidiosa M23]
 gi|307578970|gb|ADN62939.1| N-6 DNA methylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 793

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/542 (32%), Positives = 279/542 (51%), Gaps = 41/542 (7%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A++ L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 1   MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 60

Query: 57  EKYLAFGGSN--IDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDN 110
           E+       N      +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 61  ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++   +P              +  M 
Sbjct: 121 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 181 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTY---SLYDGSCGT 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++   ++    +    
Sbjct: 238 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGAD 297

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPG 327
           +  STLS D F  + F + +SNPP+GK W+ D D +    K     RF            
Sbjct: 298 K--STLSADQFPSRAFDFMISNPPYGKSWKTDLDRMGG-KKGFSDRRFIVSHGGDPEFKL 354

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +
Sbjct: 355 LTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND 446
           EAI+ALP ++F+ T IATY+W+L+N+K + RRGKVQLI+A+  +  + RN GKK   +  
Sbjct: 415 EAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCELGA 474

Query: 447 DQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
               +ILD+Y+ + +    S+  D + FGY ++ + RPLR+   L    +  L       
Sbjct: 475 ADIARILDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEE 534

Query: 506 KL 507
            L
Sbjct: 535 AL 536



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 37/157 (23%)

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG-------------------------- 579
           K    + S     A   A   +D  A PV                               
Sbjct: 643 KAQDARLSAPEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFM 702

Query: 580 -EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
            E+ PD+ L + E VP  E   I  +F REV PH PDA+I          +  ++GYEI+
Sbjct: 703 VEYEPDSALRDTEQVPLQEPGGIDAFFAREVLPHAPDAWIA--------TDKTQIGYEIS 754

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           F R+FY+  P R L DI A++  +E Q   LL ++  
Sbjct: 755 FARYFYKPVPLRTLADIRADILALEQQTEGLLHKIVG 791


>gi|71276007|ref|ZP_00652289.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71899047|ref|ZP_00681212.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71163240|gb|EAO12960.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71731160|gb|EAO33226.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 793

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 181/542 (33%), Positives = 281/542 (51%), Gaps = 41/542 (7%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 1   MQKTQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 60

Query: 57  E--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDN 110
           E  K+L          +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 61  ERKKFLDAHNVAEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++   +P              +  M 
Sbjct: 121 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLNPEVNLAPLPVKDADGRIKLPALDNHGMG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 181 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTY---SLYDGSCGT 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++   ++ +  +    
Sbjct: 238 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAQNIVGGAD 297

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPG 327
           +  STLS D F  + F + +SNPP+GK W+ D + +    K     RF            
Sbjct: 298 K--STLSADQFHSRAFDFMISNPPYGKSWKTDLERMGG-KKGFSDPRFIVSHGGDSEFKL 354

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +
Sbjct: 355 LTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWL 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND 446
           EAI+ALP ++F+ T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   +  
Sbjct: 415 EAIIALPLNIFYNTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELGA 474

Query: 447 DQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
               +ILD+Y+ + +    S+  D + FGY +I + RPLR+   L    +  L       
Sbjct: 475 ADIARILDLYLGQTQEAAQSKWFDTQDFGYWKITIERPLRLKSQLSDERIESLRFATGDE 534

Query: 506 KL 507
            L
Sbjct: 535 AL 536



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           +      +L    TW++         +++ +   Q +    + +     +      K   
Sbjct: 592 VPAERRKKLLDASTWQR-----DKVLMEVAQRAQQTLGRAVFDDHNAFCAGFDAVCKAQD 646

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582
            + S     A   A   +D  A PV                                E+ 
Sbjct: 647 ARLSAPEKKAIYKAVSWRDDAALPVITKRSKLKAGDYFEPGFDGAYLETVGKDRFMVEYE 706

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD+ L + E VP  E   I  +F REV PH PDA+I             +VGYEI+F+R+
Sbjct: 707 PDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWIA--------TNKTQVGYEISFSRY 758

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L +I A++  +E Q   LL ++  
Sbjct: 759 FYKPVPLRTLAEIRADILVLEQQTEGLLHKIVG 791


>gi|257440743|ref|ZP_05616498.1| type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257196804|gb|EEU95088.1| type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 586

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 197/558 (35%), Positives = 277/558 (49%), Gaps = 41/558 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T    + A  A  IW  A+ L G FK  ++G VILP T+++R    L PT  AV + Y 
Sbjct: 6   ITAVGANIAEKAAMIWNVADMLRGPFKPHEYGLVILPMTVVKRFHDCLLPTHQAVLDTYE 65

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
                 +      K +GY FYNTS ++  TL     N  +N   Y++ FS NA+ +   F
Sbjct: 66  KVKKLQVIDGFLQKASGYQFYNTSRFTFETLLADPDNIESNFRDYLSGFSANAQDVLAKF 125

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF + I R+ ++  LY + K F   +  L PD +       I+E L+RRF     E A  
Sbjct: 126 DFDNIIKRMVESNTLYLVIKEFGSGKGYLGPDKISAVDCGYIFEDLVRRFSESFGEEAGA 185

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RD+++L T LLL   D           T+YD   GT   L+     + +  S  ++
Sbjct: 186 HFTSRDIIYLMTDLLLSEADLDTSS-----MTVYDMAMGTSQMLSCMEERIHELNSDIEV 240

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQE  P T A+  A M+IR  + +       N++ G TLS+D F G  F Y +
Sbjct: 241 ----TCFGQEFNPSTFAIAKADMMIRGGDPN-------NMRFGDTLSEDQFPGFTFQYII 289

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W++++ AVE E   GE+GRF PGLPKISDG  LF+++   KL       G+ 
Sbjct: 290 SNPPFGIDWKREQKAVEAEAARGEMGRFAPGLPKISDGQQLFVLNGLAKL----ANKGKM 345

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + SPLF+G AGSG S IR+++LEND ++ I+ L TD+F  T I+TY+W+LS  K  
Sbjct: 346 AIIQNGSPLFSGDAGSGPSNIRQYILENDWLDCIIQLSTDMFMNTGISTYIWVLSKDKPA 405

Query: 417 ERRGKVQLINATDLWTSIRNEG-KKRRIINDDQRRQILDIYVSRENGKF----------S 465
            R GKVQLI+A+  +   R     KR  I D  R  I+  Y    NGK           S
Sbjct: 406 HRAGKVQLIDASHCFEPRRKSIGTKRNDITDACRELIVTAYGEFANGKVYGDKNGIYCES 465

Query: 466 RMLDYRTFGYRRIKVLRPLRMS--FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           ++ +   FGY +I V RP R     IL K G    +  +   +  PL Q    DI     
Sbjct: 466 KVFESVEFGYNKIVVERPQRDEAGNILLKRGKPVPDTSLRDTENVPLVQ----DIDAYFA 521

Query: 524 QQIYPYGWAESFVKESIK 541
           +++ PY           K
Sbjct: 522 REVLPYAPDAWIDHSKTK 539


>gi|150399017|ref|YP_001322784.1| N-6 DNA methylase [Methanococcus vannielii SB]
 gi|150011720|gb|ABR54172.1| N-6 DNA methylase [Methanococcus vannielii SB]
          Length = 589

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/556 (34%), Positives = 294/556 (52%), Gaps = 41/556 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + +  AN IW  A+ + G FK  ++GKVILP T+L+RL   L PT+  V E Y  +
Sbjct: 7   KTNVNVSEKANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKEKVLEAYKEY 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           G   ++   F   +GY FYNTS ++  TL     +   N  +++A FS+N + I ++F F
Sbjct: 67  GSLEVNDGFFRDASGYPFYNTSPFTFETLLNDPDHIEENFRTFMAGFSENIQDILKNFKF 126

Query: 121 ----SSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               S  +    +   L+ + + F+     + PD +    M  I+E LIR+F    +E A
Sbjct: 127 EHIISDLVGSTAEDDKLFYVIQEFNKPNSYMGPDAISTADMGYIFEELIRKFSESYNEEA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++L T LL+  +DA            YD   GT   LT     +    S  
Sbjct: 187 GAHFTARDIIYLMTDLLVTEEDAALTRGK---IDCYDMAMGTSQMLTCLTERILQLDSEV 243

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE  PET A+  A M+IR   +D       N++ G TL+ D F G +F Y
Sbjct: 244 EVN----VFGQEFNPETFAIAKADMIIRGGIAD-------NMRFGDTLTNDQFKGYKFDY 292

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           C+SNPPFG +W+  K+AVEKEHK+G+ GRFG GLPKISDG MLF ++  +KL+      G
Sbjct: 293 CISNPPFGVEWKPQKNAVEKEHKSGDNGRFGVGLPKISDGQMLFTLNGISKLK----DTG 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + SPLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S  K
Sbjct: 349 RMAIIHNGSPLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNK 408

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------S 465
           ++ER+GKVQLI+A++++   R     +R+ +++D R  I+  Y    +  +        S
Sbjct: 409 SDERKGKVQLIDASNMYEKRRKSIGNKRVDLSEDCRAAIVQAYGEFTDKFYDYGDKSVES 468

Query: 466 RMLDYRTFGYRRIKVLRPL--RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           ++ +   FG+ +I +  PL      I+ K G    +      +  PL      +I     
Sbjct: 469 KVFNNEDFGFYKITIESPLLDEKGKIVMKKGKPAPDTSKRDTENVPLTD----NIKNYFE 524

Query: 524 QQIYPYGWAESFVKES 539
           +++ PY       +  
Sbjct: 525 REVLPYNPDAWVDESK 540



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 22/210 (10%)

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK--LSPLHQSFWLDILKPMMQ 524
           +  Y     +     R  ++  I       +    I  ++  LS   ++  +        
Sbjct: 397 ITTYVWLISKNKSDERKGKVQLIDASNMYEKRRKSIGNKRVDLSEDCRAAIVQAYGEFTD 456

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
           + Y YG  +S   +   + +    K+      +          D +   V    G+  PD
Sbjct: 457 KFYDYGD-KSVESKVFNNEDFGFYKITIESPLL----------DEKGKIVMK-KGKPAPD 504

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+  + ENVP  ++I++YF REV P+ PDA++D+            +GYEI F R FY+Y
Sbjct: 505 TSKRDTENVPLTDNIKNYFEREVLPYNPDAWVDE--------SKTVIGYEIPFTRHFYKY 556

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMATE 674
               K   I   +  +EA++   L+ +  +
Sbjct: 557 VAPEKSDAIAERICVIEAELTGSLKSLFGK 586


>gi|53802448|ref|YP_112812.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
 gi|53756209|gb|AAU90500.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
          Length = 790

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 185/558 (33%), Positives = 279/558 (50%), Gaps = 38/558 (6%)

Query: 3   EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +       +++FIW  A++ L   +    +  VILPFT+LRRL+  LE T+  V E+   
Sbjct: 7   QDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEETKQKVLERKRF 66

Query: 62  FGGSN--IDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIF 115
              +N      +    AG +FYN SE++L+ L +       R +  +Y+  FS N + I 
Sbjct: 67  LDKNNVAEQDGALRMAAGQAFYNVSEFTLAKLKASSQGQRLREDFIAYLDGFSPNVQEIL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEH 161
             F F   I  L  A +L  + ++F    I L P  V             +  M  ++E 
Sbjct: 127 TKFKFRDQIQTLVDAHVLGYLIEDFLDPEINLSPLPVKDADGRIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  E +E A +  TPRDVV L   L+  P     +    +   LYD  CGTGG LT
Sbjct: 187 LIRRFNEENNEEAGEHFTPRDVVRLMAKLMFMPVADQIQSGTYL---LYDGACGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   + +          +   GQE+ PET+A+C A +L++    +    +    +  ST
Sbjct: 244 VAEETLRELAEEQGKEVSIHLFGQEINPETYAICKADLLLKGEGDEAEHIVGGADK--ST 301

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPGLPKIS 332
           LS D F  + F + +SNPP+GK W+ D D +    K     RF            + + S
Sbjct: 302 LSNDQFRSREFDFMISNPPYGKSWKTDLDRMGG-KKGFNDPRFIVSHSGDPEFKLITRSS 360

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG ++FL++   K++     G R AIV + S LF G AG GES IRRW+LEND  EAI+A
Sbjct: 361 DGQLMFLVNKLQKMKQHSPLGSRIAIVHNGSALFTGDAGQGESNIRRWILENDWCEAIIA 420

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQ 451
           LP ++F+ T IATY+W+L+NRK + R+G+VQLI+AT  +  + RN GKK   +++   ++
Sbjct: 421 LPLNIFYNTGIATYIWVLTNRKAKHRKGRVQLIDATRWFQPLRRNLGKKNCELSEADIQR 480

Query: 452 ILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           ILD+Y+ + +N    +  D   FGY +I V RPLR+   L +  +  L        L   
Sbjct: 481 ILDLYLGQPQNTPECKWFDNADFGYWKITVERPLRLKSQLTRRAIETLRFASGDEALRAE 540

Query: 511 HQSFWLDILKPMMQQIYP 528
             + + D L     ++ P
Sbjct: 541 IWAKYGDKLYAEFSKLKP 558



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           + +    +L    TW++   L +   L   +        +    +  + ++         
Sbjct: 589 VPEKRRKKLLDVSTWQRDKTLIELALLAQQELGDGVFDDHNDFRARFEAAMAK-----HG 643

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582
            K + +   A   A   +D  A PV                                E+ 
Sbjct: 644 KKLAAAEKKAIFKAVSWRDETAPPVIAKRTKLKKDEPFEPGLDGVYLEVAGKDRFLVEYE 703

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD +L + E VP  E   I  +F REV PH PDA+I +        +  ++GYEI+F R+
Sbjct: 704 PDADLRDTEQVPLKEPGGIDAFFRREVLPHAPDAWIAR--------DKTQIGYEISFARY 755

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L +I A++  +E Q   LL+++  
Sbjct: 756 FYKPAPLRTLDEIRADILRLEQQTEGLLQKIVG 788


>gi|298529186|ref|ZP_07016589.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510622|gb|EFI34525.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 786

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/556 (34%), Positives = 290/556 (52%), Gaps = 45/556 (8%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYL 60
             G    +ANFIW  A+D L   +    +  VILP T++RRL+  LEPT+  V +  + L
Sbjct: 2   ENGQLNWIANFIWNIADDVLRDVYVRGKYRDVILPMTVIRRLDACLEPTKQDVLKMSEQL 61

Query: 61  AFGGSNIDLESFVKVAG----YSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAK 112
              G    + +  + AG    ++FYN S ++L  L     +   + + E+Y+  FS N +
Sbjct: 62  DKAGVANKVGALSRAAGADANHAFYNDSPFTLRDLQSRGKAQQLKADFETYLDGFSPNVQ 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNI 158
            I E F F + I  L  A  L  + + F    I L P  V             +  M  I
Sbjct: 122 EILEKFKFRNQIPTLVDADALGPLIEKFLNPDINLCPHPVRDVEGNVRLPGLDNHAMGTI 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E LIRRF  E +E A +  TPRDVV L   L+  P   +  +       +YD  CGTGG
Sbjct: 182 FEELIRRFNEENNEEAGEHFTPRDVVKLMANLIFWP---IADDIRSATYRVYDGACGTGG 238

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT A + +    S       +   GQE+ PET+A+  A +L++          ++N++ 
Sbjct: 239 MLTVAEDTLQGLASSRGKNVSIHLFGQEVNPETYAISKADLLLKG-----EGQGAENMKF 293

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG-----LPKI 331
           GSTLS+D F    F + LSNPP+GK W+ D D +  +K+  +        G     + + 
Sbjct: 294 GSTLSRDAFPSGEFDFMLSNPPYGKSWKMDLDRMGGKKDMSDHRFVVQHDGDELSLITRS 353

Query: 332 SDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           SDG +LFL++   K+  P      G R A V + S LF G AGSGES IRRW++END +E
Sbjct: 354 SDGQLLFLVNKLTKMVEPTERSPLGSRIAEVHNGSSLFTGDAGSGESNIRRWIIENDWLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ALP ++F+ T IATY+W+L+N K EER+GKVQLI+ATD++  +R N G K   ++++
Sbjct: 414 AIIALPLNMFYNTGIATYIWVLTNAKPEERKGKVQLIDATDIYQPLRKNMGAKNCELSEE 473

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           Q +QI +++++ E  + S++     FGY +I+V RPLR+   L +  +  L        +
Sbjct: 474 QIKQICEMFLAFEETEQSKIFPNAAFGYWKIRVERPLRLHSQLTRKAIQGLRYASGDEDI 533

Query: 508 -SPLHQSFWLDILKPM 522
              LH+ F   I +  
Sbjct: 534 RQALHEEFGDTIFENF 549



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 41/204 (20%)

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           + + I +K     L+AD TW++   L+ +      + +  ++    +    +     ++ 
Sbjct: 581 KRTVIPEKKRKKLLKAD-TWKRDKKLYDAA-----RALRDELGEDVFTNHNIFRDAVADG 634

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG------------------------- 579
            K L +K S        NA   +   A PV                              
Sbjct: 635 LKKLGIKLSAGEQKIIFNAMSWRVEDAPPVIKKAHKPGKAEVDPLHGLYANPEGDPGLVL 694

Query: 580 EWIPDTNLTEYENVPY--LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           E+ PD+ L + E VP      I+ +F REV PHVP A+ID+           ++GYEI+F
Sbjct: 695 EYEPDSELRDSEQVPLLEEGGIEAFFRREVLPHVPGAWIDE--------SATKIGYEISF 746

Query: 638 NRFFYQYQPSRKLQDIDAELKGVE 661
            R FY+    R L++I  +L  ++
Sbjct: 747 TRHFYKPPELRPLEEIKVDLLALQ 770


>gi|330941785|gb|EGH44534.1| N-6 DNA methylase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 795

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/619 (29%), Positives = 296/619 (47%), Gaps = 46/619 (7%)

Query: 3   EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KY 59
           +       +++FIW  A+D L   +    +  V+LPFT+LRRL+  LE T++AV E  K 
Sbjct: 7   QDQSQIKWISDFIWSIADDRLRDVYVRGKYRDVVLPFTVLRRLDAVLESTKNAVLERKKL 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIF 115
           L          +    A  +FYN SE++L+ L ++      R++  +Y+  FS N + I 
Sbjct: 67  LDAHNVAEQDGALRDAAKQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEIL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEH 161
             F+F + I +L  + +L  +  +F   E++   +P              +  M  ++E 
Sbjct: 127 TKFNFRNQIQKLVDSHVLGYLIDDFLDPEINLAPLPVKDADDRIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  E +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT
Sbjct: 187 LIRRFNEENNEEAGEHFTPRDVVQLMAKLLFLPVAQSIESSTY---SLYDGSCGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A + + +    H     +   GQE+  ET+A+C A +L++   ++    +    +  ST
Sbjct: 244 VAEDALHELADQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADK--ST 301

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GPGLPKIS 332
           LS D F  + F + +SNPP+GK W+ D + +    K+    RF            + + S
Sbjct: 302 LSADQFRSREFDFMISNPPYGKSWKTDLERMGG-KKDFSDPRFIVSHAGEPEFKLITRSS 360

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           DG ++FL++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI++
Sbjct: 361 DGQLMFLVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIS 420

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQ 451
           LP ++F+ T I+TY+W+L+N+K+  RRGKVQLI+A+     + RN G+K   +++     
Sbjct: 421 LPLNIFYNTGISTYIWVLANKKSAARRGKVQLIDASQWSQPLRRNLGRKNCELSEADIAC 480

Query: 452 ILDIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           IL++Y    ++   S+ LD + FGY +I V RPLR+   L    +  L        L   
Sbjct: 481 ILELYLGEAQDTAHSKWLDTQDFGYWKISVERPLRLRSQLSDERIEPLRFASGDEVLRAE 540

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                             +   +S ++  +K  +       +          A   +  R
Sbjct: 541 ------IYATHGEALYRDFAKRKSAIEAWLKGEDENEDDEDSDGGDSGDSSEAPAVR--R 592

Query: 571 ADPVTDVNGEWIPDTNLTE 589
           A P           T   +
Sbjct: 593 AVPAKRRKKLLDASTWQRD 611



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 82/218 (37%), Gaps = 42/218 (19%)

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
           +   +      +L    TW++         +++ +   Q +    + +     +   +  
Sbjct: 590 VRRAVPAKRRKKLLDASTWQR-----DKVLMEVAQRAQQALGSVVFDDHNEFRTRFDSAL 644

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG-------------------------- 579
           K    K       A   A   +D  A PV                               
Sbjct: 645 KAQGDKIGAPEKKAIYKAVSWRDGTAPPVITKRTKLKATDPFVGNNDGRYLLDEQNHREV 704

Query: 580 -EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
            E+  DT+L + E VP  E   I  +F REV PH PDA+I +        E  ++GYEI+
Sbjct: 705 VEYESDTDLRDSEQVPLKEQGGIDAFFAREVLPHAPDAWIAR--------EKTQIGYEIS 756

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           F R+FY+  P R L +I A++  +E Q   LL ++  +
Sbjct: 757 FARYFYKPTPLRTLAEIRADILALEQQSEGLLHKIVGD 794


>gi|309780965|ref|ZP_07675704.1| type I restriction-modification system, M subunit [Ralstonia sp.
           5_7_47FAA]
 gi|330824639|ref|YP_004387942.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|308920268|gb|EFP65926.1| type I restriction-modification system, M subunit [Ralstonia sp.
           5_7_47FAA]
 gi|329310011|gb|AEB84426.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 794

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 183/528 (34%), Positives = 277/528 (52%), Gaps = 36/528 (6%)

Query: 11  LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNI 67
           +++FIW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV E  K+L       
Sbjct: 15  ISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDTHKVAE 74

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSST 123
              +    AG +FYN SE++L+ L ++      R++  +Y+  FS N + I   F+F + 
Sbjct: 75  QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQ 134

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGSE 169
           I +L  + +L  +  +F   E++   +P              +  M  ++E LIRRF  +
Sbjct: 135 IQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 194

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P       S     +LYD +CGTGG LT A   + +
Sbjct: 195 NNEEAGEHFTPRDVVQLMAKLLFLPVADRIDSSTY---SLYDGSCGTGGMLTVAEEALHE 251

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               H     +   GQE+  ET+A+C A +L++   ++    +    +  STLS D F  
Sbjct: 252 LAEEHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADK--STLSADQFRS 309

Query: 290 KRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------LPKISDGSMLFLMH 341
           + F + +SNPP+GK W+ D + +  +KE  +        G      L + SDG ++F ++
Sbjct: 310 REFDFMISNPPYGKSWKTDLERMGGKKEFNDPRFIVSHAGNAEFKLLTRSSDGQLMFQVN 369

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ T
Sbjct: 370 KLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNT 429

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY-VSR 459
            IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   + D    +ILD+Y    
Sbjct: 430 GIATYIWVLANKKAEARRGKVQLIDASGWFQPLRRNLGKKNCELADADIARILDLYLGEA 489

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           +    S+  D + FGY +I V RPLR+   L    +  L        L
Sbjct: 490 QETAQSKWFDTQDFGYWKITVERPLRLKSQLSDERIEPLRFATGDEAL 537



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           +      +L    TW++         +++ +   Q +    + +     +      K   
Sbjct: 593 VPAKRRKKLLDATTWQR-----DKGLMEVAQRAQQALGSAVFDDHNEFRTRFDAALKARG 647

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582
            K       A   A   +D  A PV                                E+ 
Sbjct: 648 EKLGAPEKKAIYKAVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMVEYE 707

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD+ L + E VP  E   I  +F REV PH PDA+I          +  ++GYEI+F R+
Sbjct: 708 PDSELRDTEQVPLKEPGGIDAFFAREVLPHAPDAWIA--------TDKTQIGYEISFARY 759

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L +I A++  +E Q   LL ++  
Sbjct: 760 FYKPAPLRTLAEIRADILALEQQSEGLLHKIVG 792


>gi|264677661|ref|YP_003277567.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208173|gb|ACY32271.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 545

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/475 (35%), Positives = 264/475 (55%), Gaps = 48/475 (10%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              + +FIW  A+D L   F    +  VILP  +LRRL+C LEP++ AV E+        
Sbjct: 6   HNKIVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEEVRFQREDA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +++D     + +GY FYNTS ++L +L    +    NL++Y+  FSDN K I E FD 
Sbjct: 66  EMADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLDGFSDNVKEIVEKFDL 125

Query: 121 SSTIARLEKAGLLYKICKNF--SGIELHPDT-----------VPDRVMSNIYEHLIRRFG 167
            + I ++ ++ +L+ + + F    I L P+            + +  M  ++E LIR+F 
Sbjct: 126 RNQIRKMAQSDVLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFN 185

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E +E A +  TPR+V+ L T L+  P     K+      T+YDP CG+GG LT++ + +
Sbjct: 186 EENNEEAGEHFTPREVIKLMTNLVFIP----VKDQLPNPLTIYDPACGSGGMLTESQDFI 241

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            D     K    +  +G+E+ PET+A+C + M+I+  + +       NI+ GSTL+ D F
Sbjct: 242 TDPEGEIKAKVGVFLYGKEVNPETYAICKSDMMIKGNDPE-------NIKFGSTLATDDF 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--------------PGLPKISD 333
           +G RF + L+NPP+GK W+ D+ ++  E K+    RF               P +P+ SD
Sbjct: 295 SGTRFDFMLTNPPYGKSWKSDQKSI-VEGKDVIDHRFQVNLSDYSEEDFDFYPAIPRSSD 353

Query: 334 GSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           G +LF+M +  K++       G R A V + S LF G AGSGES IRR ++END +EAI+
Sbjct: 354 GQLLFMMEMVGKMKRLGDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAII 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
            LP +LF+ T I TY+W+LSN K ++R+GKVQLI+A++L+  +R    ++   + 
Sbjct: 414 QLPNNLFYNTGITTYVWVLSNNKADQRKGKVQLIDASNLYQKLRKNLGEKNCESP 468


>gi|134045682|ref|YP_001097168.1| N-6 DNA methylase [Methanococcus maripaludis C5]
 gi|132663307|gb|ABO34953.1| N-6 DNA methylase [Methanococcus maripaludis C5]
          Length = 587

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 189/554 (34%), Positives = 279/554 (50%), Gaps = 39/554 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +    AN IW  A+ + G FK  ++GKVILP T+L+RL   L PT+ AV +     
Sbjct: 7   QTNINVQEKANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKDAVLKTCEEI 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        AGY FYNTS ++  TL     +   N   +IA FSDN + I + F F
Sbjct: 67  KDFEVKEGFLESAAGYPFYNTSPFTFETLLNDPDHIEANFRKFIAGFSDNIQDIIKHFKF 126

Query: 121 ----SSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               S  +    +   L+ + + F+     + PD +    M  I+E LIR+F    +E A
Sbjct: 127 EHIISDLVGSTPEEDKLFYVIQEFNKPSSYMGPDAISTADMGYIFEELIRKFSESYNEEA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++L T LL+  D+           T YD   GT   LT     +    +  
Sbjct: 187 GAHFTARDIIYLMTDLLVTEDEFDGSPK-----TCYDMAMGTSQMLTCLTERIQQLDNKI 241

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE  PET A+  A M+IR  ++D       N++ G TL  D F G  F Y
Sbjct: 242 EV----SVFGQEFNPETFAIAKADMIIRGGKAD-------NMRFGDTLINDQFKGYTFDY 290

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           C+SNPPFG  W+  K AV+KE+K  E GRFG GLPKISDG MLF ++  +KL+      G
Sbjct: 291 CISNPPFGVDWKAQKKAVDKENKLAEKGRFGVGLPKISDGQMLFTLNGISKLK----DTG 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + SPLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S  K
Sbjct: 347 RLAIIHNGSPLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNK 406

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------S 465
           ++ER GKVQLI+A++++   R     +R+ ++ D R  I+  Y    +  +        S
Sbjct: 407 SDERAGKVQLIDASNMYVKRRKSIGNKRVDLSTDCREAIVKAYGEFSDKYYDYGEKSVES 466

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           ++ +   FGY +I V  PL+           +   D + R    +      DI +   ++
Sbjct: 467 KVFNNEDFGYYKITVESPLKDEKGKIVIKKGKPAPDTSKRDTENV--PLTEDIEEYFKRE 524

Query: 526 IYPYGWAESFVKES 539
           + PY        + 
Sbjct: 525 VLPYNPEAWIDDKK 538



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
             PDT+  + ENVP  E I++YF REV P+ P+A+I        D +   +GYEI F R 
Sbjct: 499 PAPDTSKRDTENVPLTEDIEEYFKREVLPYNPEAWI--------DDKKTTIGYEIPFTRH 550

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           FY+Y    K   +   +  +EA++   L+ +  +
Sbjct: 551 FYKYVAPEKSDMVAERICVIEAELTGSLKSLFGK 584


>gi|325289014|ref|YP_004265195.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964415|gb|ADY55194.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 599

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/537 (36%), Positives = 294/537 (54%), Gaps = 48/537 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYLAFG 63
           +    A+ IWK A+ L GD+K +D+GKVILP T+LRRL+C LEPT+  V +   K  +  
Sbjct: 3   NFKEKADLIWKVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLPKVESLK 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            S  D+ +  K+AG++F+N S+ +   L     N   NL +YI  FS +A+ I E F+F 
Sbjct: 63  ESAKDI-ALNKIAGFNFHNRSQLNFDKLIADPNNVSVNLRNYINGFSSSAREIIEYFNFD 121

Query: 122 STIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             I R++       +++ K F  I L    +    M  ++E LIRRF  + +E A +  T
Sbjct: 122 DHIDRMDDPKTDILFRVLKAFQEIGLT--DMDSMEMGYVFEDLIRRFAEQSNETAGEHFT 179

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   LL   D  +  +  G+++TLYDP CGTGG L+    +V +     +    
Sbjct: 180 PREVIRLMVNLLFIEDKDILTQE-GIVKTLYDPACGTGGMLSVGEQYVKELNPKAE---- 234

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L   GQE+ PE++A+C + MLI+            NI+ G+T + D    ++F Y LSNP
Sbjct: 235 LKVFGQEINPESYAICKSDMLIKGQNPS-------NIKFGNTFTVDGLEEEKFDYMLSNP 287

Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  ++ E  N G  GRFG GLP+I+DGS+LFL H+ +K++L    G R  I
Sbjct: 288 PFGVDWKKAEKIIKAEADNKGMNGRFGAGLPRINDGSLLFLQHMISKMKL---SGTRIGI 344

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + SPLF G A SGES IR+W++END +EA++ALP  LF+ T I+TY+WI++N K+EER
Sbjct: 345 VFNGSPLFTGAAESGESNIRKWIIENDWLEAVIALPDQLFYNTGISTYIWIINNSKSEER 404

Query: 419 RGKVQLINAT----------------DLWTSIRNEGKKRRIINDDQ-----RRQILDIYV 457
           +GKVQLINAT                  W  +      +R    +         I  +Y 
Sbjct: 405 KGKVQLINATGAKDEELTKEGKLDFNRFWQKMDRSLGDKRKKIAENGNTKGIGFITQLYG 464

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRM-SFILDKTGLARLEADITWRKLSPLHQS 513
           + E  +F ++     FGY RI V +P++  S ++   G  + +  +   +  P  + 
Sbjct: 465 NFEENEFVKIYPNEFFGYWRITVEQPMKENSKVVKSKGQPKPDTSLRDYENIPFLKK 521


>gi|52549663|gb|AAU83512.1| type I site-specific restriction-modification system methylation
           subunit [uncultured archaeon GZfos29E12]
          Length = 455

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/474 (37%), Positives = 264/474 (55%), Gaps = 32/474 (6%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CGTGG LT   + +            +V  GQE+ PE +A+C A ML++      
Sbjct: 1   MYDPACGTGGMLTSCEDFIMSINKE----VDVVLFGQEVNPEIYAICKADMLMKGENDKN 56

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            R         STLSKD F   +F + +SNPP+G+KWE+D DAV+ E + G  GRFG GL
Sbjct: 57  IRGPF------STLSKDQFHDDKFDFIISNPPYGRKWEQDADAVKDEAERGFGGRFGAGL 110

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P+I+DG +LFL H+ +K++       R A++ + SPLF G AG GES+IR+W++E+D +E
Sbjct: 111 PRINDGQLLFLQHMISKMKSK--EKSRVAVITNGSPLFTGDAGQGESDIRKWMIESDFVE 168

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDD 447
           AI+ALP  LFF T I TY+W+L+N K  ER GK+QLI+AT  +  +R   G KR  ++ D
Sbjct: 169 AIIALPDQLFFNTGIHTYIWVLTNVKPVERVGKIQLIDATSFFKKMRKSLGNKRNYLSAD 228

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             ++I+++Y   E  K+ ++ D   FGY ++ V RPL++++ + +     L +   +RKL
Sbjct: 229 DIKEIVELYDDFEENKYCKIFDNEVFGYTKVIVERPLQLNYQVAEERRENLYSIPVFRKL 288

Query: 508 SPLHQSFWLDILKPMMQQIYPY----GWAESFVKESIKSNEAKTLKVK-------ASKSF 556
           +   +      LK   +            +     S K+ +    KVK        S +F
Sbjct: 289 AESKKKDPELKLKEEEEGKKKQEEIINNLKKIGNHSYKNWDEFEKKVKEALKGFDLSPNF 348

Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI 616
           I   I A    D  AD V D  G  +PD NL + E +P  + I+ YF REV P+ PDA +
Sbjct: 349 IKNIILALSEHDDIADYVLDKKGNKLPDPNLRDSEKIPLKQDIEKYFDREVKPYYPDALM 408

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           D+        +  +VGYEINF ++FY Y+P R L++I+ ++K V  +I  L  +
Sbjct: 409 DR--------KKDKVGYEINFTKYFYVYKPPRPLEEIEKDIKEVIEEIQELFGD 454


>gi|126664067|ref|ZP_01735061.1| type I restriction-modification [Flavobacteria bacterium BAL38]
 gi|126624016|gb|EAZ94710.1| type I restriction-modification [Flavobacteria bacterium BAL38]
          Length = 578

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/540 (34%), Positives = 292/540 (54%), Gaps = 26/540 (4%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M            FIW+  +D L   FK  + G V+LPF ++RRL+C L+     VR+ Y
Sbjct: 1   MNNNNTKVE--VGFIWQITDDVLRDAFKKNEIGDVVLPFVVIRRLDCILDGVNENVRDTY 58

Query: 60  LAFGGS--NIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA 113
             F        L+  ++ A  G  FYNTS ++L +L     N   N  +Y+  F+   + 
Sbjct: 59  NNFKDKVAEDKLDPILRKAAGGLKFYNTSRHTLHSLKDDARNIEINFNNYLNGFNQEVRD 118

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I E+F F   +ARL K  LLY++      I++H + + +  M  ++E LIR    + +E 
Sbjct: 119 ILENFQFDKIVARLIKNKLLYEMIDAICKIDMHTEKIDNHGMGYVFEELIRISNEQSNET 178

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-S 232
           A +  TPRDV+ L   +L    +      PG+IRT++DP CGTGG +    N++ D    
Sbjct: 179 AGEHFTPRDVIALMNTILFVN-EKQELAQPGIIRTIFDPACGTGGMVNLGKNYILDTLLK 237

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K  P +  +GQEL  +++A+  +  LI   E++       NI+ G++ S+D F GK F
Sbjct: 238 DSKNKPTIQTYGQELNEQSYAIAKSEALITGEEAN-------NIKHGNSFSEDQFQGKHF 290

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           HY ++NPP+G  W+KD+  +E E  N   GRF  GLP+ SDG +LFL H+ +K+E     
Sbjct: 291 HYMMANPPYGVTWKKDQKFIENESLNP-AGRFYAGLPRTSDGQLLFLQHMLSKIE---RE 346

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  +V + SPLF G AGSGES+IR+W++END +E IVALP D+F+ T I TY+W L+N
Sbjct: 347 GSRIGVVTNGSPLFTGDAGSGESDIRKWIIENDWLECIVALPKDMFYNTGINTYIWFLTN 406

Query: 413 RKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +K ++R+GKVQLINA D   ++ ++ G KR  I  +    IL +Y   +  + S++ D  
Sbjct: 407 KKEKQRKGKVQLINAVDYCRSNKKSLGNKRNEITAEHITDILKLYTDFKPTQHSKIFDNE 466

Query: 472 TFGYRRIKVLRPLR---MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            FGY ++ V +P+       +LDK    + ++    ++  PL           ++  +  
Sbjct: 467 HFGYFQLTVEQPVYDEKGKKVLDKNKNPKADSKKRDKENVPLTADIEKYFETQVLPHVPD 526



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
             D +   V D N     D+   + ENVP    I+ YF  +V PHVPDA+I        D
Sbjct: 479 VYDEKGKKVLDKNKNPKADSKKRDKENVPLTADIEKYFETQVLPHVPDAWI--------D 530

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +  R+GYEINF ++FY+Y+  R   ++  E+  +E +I + L E+ +
Sbjct: 531 FDKTRIGYEINFTKYFYEYKGLRPATEVKTEIVSLETEITSFLNELLS 578


>gi|162448115|ref|YP_001621247.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A]
 gi|161986222|gb|ABX81871.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A]
          Length = 593

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 193/558 (34%), Positives = 289/558 (51%), Gaps = 39/558 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T +    AN IW  A  L G FK  ++GKVILP T+L+R + AL+ T+  V        
Sbjct: 10  TTTNIQEKANLIWAIANHLVGLFKPHEYGKVILPMTVLKRFDDALKETKQEVLSLNKKLN 69

Query: 64  G----SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                  I      K  GY FYN S ++   L     N  +N ++Y+  FSDN K I  +
Sbjct: 70  EQKTIDAIKDGLICKTTGYDFYNVSPFTFENLLADPDNIASNFDTYLKGFSDNVKDIISN 129

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           F F   +  + K  +LY + + F+    ++HPD +    M  I+E LIR+F     E A 
Sbjct: 130 FKFEQVLETMHKGNVLYVVIQEFNSKKADMHPDKITSMDMGYIFEELIRKFSESYDEQAG 189

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              T RD+++L   LL+  +    K++ G+++T YD   GT   L      + +     K
Sbjct: 190 AHFTSRDIIYLMAELLVANEKEHIKQN-GVVKTAYDMAMGTSQMLGCLDEKMKEINFDSK 248

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE  PET+A+  A MLI+   +       +N++ G TLS D F+   F Y 
Sbjct: 249 ----LSLFGQEFNPETYAIAKADMLIKGGNA-------QNMKFGDTLSDDQFSNYEFDYI 297

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +SNPPFG  W+ ++  V++E+ K G  GRFGPGLP ISDG MLFL++   KL+    G G
Sbjct: 298 ISNPPFGIDWKLEEKQVKQEYAKLGYDGRFGPGLPAISDGQMLFLLNGVKKLK---EGSG 354

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + S LF G AGSG SEIR++L+E+DL+EAI+ LPTDLF+ T I+TY+WI+S  K
Sbjct: 355 RMAIIQNGSSLFTGDAGSGPSEIRKYLIESDLLEAIIQLPTDLFYNTGISTYVWIVSKNK 414

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------S 465
            +ER GK+QLI+A++ +   R    K+R+ ++D     I   Y+  +  K+        S
Sbjct: 415 NKERLGKIQLIDASNCYVKRRKNIGKKRVDLDDTSIDLITKAYLDFKEVKYEENDLVVES 474

Query: 466 RMLDYRTFGYRRIKVLRPLRMS--FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           ++ D   FGY ++ V  P+       + K G  + ++     +L PL +    +I     
Sbjct: 475 KIFDNDFFGYTKVTVESPITDENGKPILKKGKLQADSKKRDTELVPLQE----NIEAFFK 530

Query: 524 QQIYPYGWAESFVKESIK 541
             + PY  +    +   K
Sbjct: 531 DNVLPYNSSAWMDRSKDK 548


>gi|15597931|ref|NP_251425.1| restriction-modification system protein [Pseudomonas aeruginosa
           PAO1]
 gi|9948812|gb|AAG06123.1|AE004701_6 probable restriction-modification system protein [Pseudomonas
           aeruginosa PAO1]
          Length = 792

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/615 (31%), Positives = 303/615 (49%), Gaps = 49/615 (7%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   A+FIW  A+D L   +    +  VILPFT+LRR++  LEPT+ AV 
Sbjct: 1   MQKRQQDQSQIKWVADFIWNIADDRLRDVYVRGKYRDVILPFTVLRRIDAVLEPTKQAVL 60

Query: 57  E--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDN 110
           E  K L          +    AG +FYN SE++L+ L ++      R +  +Y+  FS N
Sbjct: 61  ERKKLLDSAKVANQNGALQAAAGQAFYNVSEFTLAKLKASAAGQRLREDFIAYLDGFSPN 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMS 156
            + +   F+F + I +L  A +L  + ++F   E++   +P              +  M 
Sbjct: 121 VQEVLTKFNFRNQIQKLVDAHILGYLIEDFLDPEVNLSPLPVKDADGRTKLPALDNHGMG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  E +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 181 TVFEELIRRFNEENNEEAGEHFTPRDVVQLMAKLLFLPVADRIESSTY---SLYDGSCGT 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   + +    H     +   GQE+  ET+A+C A +L++   ++    +    
Sbjct: 238 GGMLTVAEEALKELAEQHGKDVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGAD 297

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------L 328
           +  STLS D F  + F + +SNPP+GK W+ D + +  +KE  +        G      +
Sbjct: 298 K--STLSADQFRSREFDFMISNPPYGKSWKTDLERMGGKKEFSDPRFIVNHGGDAEFKLI 355

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            + SDG ++F ++  +K++     G R A+V + S LF G AG GES IRRW+LEND +E
Sbjct: 356 TRSSDGQLMFQVNKLSKMKHDTALGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLE 415

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDD 447
           AI+ALP ++F+ T IATY+W+L+N+K E R+G+VQLI+A+  +  + RN GKK   + + 
Sbjct: 416 AIIALPLNIFYNTGIATYIWVLANKKAEHRKGRVQLIDASQWFAPLRRNLGKKNCELAEG 475

Query: 448 QRRQILDIY--VSRENG---KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
             R+ILD+Y   ++E       S+  D + FGY +I V RPLR+   L  + +  L    
Sbjct: 476 DIRRILDLYLGEAQETDSSTDQSKWFDTQDFGYWKITVERPLRLKSQLKTSAIDTLRFAS 535

Query: 503 TWRKLS----PLHQSFWLDILKPMMQQIYPY--GWAESFVKESIKSNEAKTLKVKASKSF 556
              +L       H          +  +I  +  G +E          E    K    +  
Sbjct: 536 GDEELRTEIYAEHGDKLYTSFAKLKPEIEAWLKGGSEDDDDAEDGDEEGTHAKKAVPEKR 595

Query: 557 IVAFINAFGRKDPRA 571
               ++A   +  + 
Sbjct: 596 RKRLLDATTWQRDKG 610



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           + +    RL    TW++   L     L            +    +    ++K+       
Sbjct: 591 VPEKRRKRLLDATTWQRDKGLLDLALLAQKVLGDAVFDDHNVFRAEFDIAMKA-----HD 645

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNGE---------------------------WI 582
            K + +   A   A   +D  A PV     +                           + 
Sbjct: 646 KKLTAADKKAIFKAVSWRDDTAPPVVAKRHKLKASDAFIPSFDGRYFIETGKHREVVWYE 705

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD +L + E VP  E   I  +F REV PH PDA+I        D E  ++GYEI+F R+
Sbjct: 706 PDADLRDTEQVPLKELGGIDAFFEREVLPHAPDAWI--------DGEKTQIGYEISFARY 757

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L DI A++  +E Q   LL ++  
Sbjct: 758 FYKPTPLRPLDDIRADILKLEQQTEGLLHKIVG 790


>gi|310658569|ref|YP_003936290.1| n-6 DNA methylase [Clostridium sticklandii DSM 519]
 gi|308825347|emb|CBH21385.1| N-6 DNA methylase [Clostridium sticklandii]
          Length = 597

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/560 (34%), Positives = 296/560 (52%), Gaps = 37/560 (6%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +    A+ IW  A+ + G FK  ++GKVILP TLL+RL   L  T+  V +KY   
Sbjct: 7   QTNINVQEKADMIWGIADIIRGTFKPHEYGKVILPMTLLKRLNDTLLETKEGVLKKYEEV 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
               +      K +GYSFYN S ++   L +   +   N +++IA FS+N   I ++F F
Sbjct: 67  KNFEVKDGFLTKASGYSFYNISPFTFENLLNEPEHIEENFKTFIAGFSENIHDIIKNFKF 126

Query: 121 SSTIARL----EKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            +T+  L    ++   L+ + + F+     +  D +    M  I+E L+R+F    +E A
Sbjct: 127 ENTLNDLVGSTKEESKLFYVIQEFNKPNAYMGADIITTTDMGYIFEELVRKFSESYNEEA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++  T LL+  ++ + +E  G+++T+YD   GT   LT     + +  +  
Sbjct: 187 GAHFTARDIIYTMTDLLIAEEENVLQED-GLVKTVYDMAMGTSQMLTSMEERLKELDADA 245

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE+ PET+A+  A M+IR   +        N++ G TLS D F    F Y
Sbjct: 246 EV----TVFGQEINPETYAIAKADMIIRGGNAS-------NMRFGDTLSNDRFEDYEFDY 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPPFG  W+  K AVEKEHK G  GRF PGLPKISDG MLF ++   KL    N  G
Sbjct: 295 IISNPPFGVDWKAQKSAVEKEHKKGSNGRFAPGLPKISDGQMLFTLNGIKKL----NDTG 350

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + AI+ + SPLF G AGSG SEIRR+++ENDL+EAIV LPTDLF+ T I TY+W++S  K
Sbjct: 351 KMAIIHNGSPLFVGDAGSGPSEIRRYIIENDLLEAIVQLPTDLFYNTGITTYIWLISKNK 410

Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465
           +  R GKVQLI+A++++   R + G KR  +++  R  I++ Y   EN  +        S
Sbjct: 411 SARRTGKVQLIDASNMYIKRRTSLGNKRVELDECCREAIVNAYGDFENKHYEYDKKSVES 470

Query: 466 RMLDYRTFGYRRIKVLRPLRMSF--ILDKTGLARLEADITWRKLSP--LHQSFWLDILKP 521
           ++ +   FGY +I V  P    +  I+ K   +  +      +  P  L +     I + 
Sbjct: 471 KIFNNEDFGYYKIVVESPQVDEYGKIILKKKQSVADPSKRDTENVPMILGKDQDEVIKEY 530

Query: 522 MMQQIYPYGWAESFVKESIK 541
             +++ PY       +   K
Sbjct: 531 FEKEVLPYNQDAWVDENKTK 550



 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
           ++     + +   K      ++   K+  ++ F    I     +      +     + + 
Sbjct: 446 REAIVNAYGDFENKHYEYDKKSVESKIFNNEDFGYYKIVVESPQVDEYGKIILKKKQSVA 505

Query: 584 DTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           D +  + ENVP        E I++YF +EV P+  DA++D+           ++GYEI F
Sbjct: 506 DPSKRDTENVPMILGKDQDEVIKEYFEKEVLPYNQDAWVDENK--------TKIGYEIPF 557

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            R FY+Y    K + I   +  +E  +   L+ +
Sbjct: 558 TRHFYKYVAPEKSEVIAERISAIENDLMGSLKSL 591


>gi|317132744|ref|YP_004092058.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470723|gb|ADU27327.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 689

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 249/484 (51%), Gaps = 45/484 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               L DP  GTGG L+  + +  +  +      ++  +GQEL  +T+A+C +  +I+  
Sbjct: 2   KDEVLIDPAAGTGGMLSAGIEYATELNNQ----ALIEVYGQELNEKTYAICKSDTMIKG- 56

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                    KNI  G++ ++D    + FHY L NPPFG +W+K +  +  E++ G  GRF
Sbjct: 57  ------KGYKNIHLGNSFTEDALPHETFHYMLCNPPFGVEWKKYEKFIRDENERGFAGRF 110

Query: 325 GPGLPKISDGSMLFLMHLANKL-----ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G GLP++SDGS+LFL H+ +K+     +     G R AIV + SPLF G AGSGESEIRR
Sbjct: 111 GAGLPRVSDGSLLFLQHMISKMMEYDEKAEGLTGCRLAIVFNGSPLFTGDAGSGESEIRR 170

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EG 438
           W++EN  +E I+ALP  LF+ T I TY+WI++NRK   R+GK+QLI+ T  +  +R   G
Sbjct: 171 WIIENGWLETIIALPDQLFYNTGILTYVWIVTNRKKGVRKGKIQLIDGTSFFERMRKPLG 230

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +KR++I+++Q+ ++  IY     G+F ++ D   F Y ++ V RPLR++F      + R+
Sbjct: 231 EKRKLISEEQKDELTRIYGKFVEGEFCKIFDEDDFAYWKVTVERPLRLNFQASAERIKRI 290

Query: 499 EADITWRKLS-----------------PLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                +  L+                    Q   L  +  +   +  Y     F K   K
Sbjct: 291 REQTAFANLATSRKRKPAEHDAEVAEGKKQQEAALAAVATLDGAVL-YKNRAEFSKLLHK 349

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
           + +   L VK     + A +     KD  AD  TD  G   PDT+L + E +P+ + I  
Sbjct: 350 AFKKAGLDVK--APLLKAVLAGLSEKDETADICTDAKGNPEPDTDLRDTEQIPFKDDIAA 407

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  REV P+ PDA++D+           + GYEI F RFF  ++          +++ + 
Sbjct: 408 YVQREVLPYAPDAWVDE--------SKTKKGYEIPFARFFSSFEELGNADGTLRKIQSLG 459

Query: 662 AQIA 665
            +I 
Sbjct: 460 QKIQ 463


>gi|328951823|ref|YP_004369157.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452147|gb|AEB07976.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
          Length = 499

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/505 (22%), Positives = 204/505 (40%), Gaps = 40/505 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T S + L + +W+ A  L G     DF   + P    +RL    +       ++  
Sbjct: 1   MDNSTLSLSQLESHLWEAANILRGPVDAADFKTYVFPLLFFKRLSDVYDEEYQEALKEA- 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFE 116
              G + +   F +   +       +      +TN    L++ +        +    IF 
Sbjct: 60  ---GGDEEYARFPQNYRFQIPEDCHWRDVRAVATNVGQALQTAMRCIETANPETLYGIFG 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  +++   RL  A LL  + ++FS I L        ++   YE+LI++F    ++ A +
Sbjct: 117 DAQWTNK-DRLSDA-LLRDLIEHFSKIPLGNAVAQADILGQSYEYLIKKFADLTNKKAGE 174

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   +L           P    ++YDP CGTGG L +A++HV +     + 
Sbjct: 175 FYTPRAVVRLMVNIL----------DPQEGESIYDPACGTGGMLLEAIHHVREHHGDVRT 224

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQE    T A+    +++    +D +   +  ++Q +  S D      +   +
Sbjct: 225 LWG-RLFGQEKNLTTSAIARMNLILHG-AADFKIIRADTLRQPAFFSGDNLA--TYDCVI 280

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  +        E+   +   GR   G+P    G   ++ H+   +       GR 
Sbjct: 281 ANPPFSLEKWG-----EEVWTSDPFGRNFAGMPPAKSGDFAWVQHMIKSM---APKTGRM 332

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL    LF   A   E +IR+ LL  DL+EA++ L  +LF+ T +A  + I   RK  
Sbjct: 333 AVVLPHGVLFRMGA---EGKIRQKLLNMDLLEAVIGLGPNLFYGTGLAACILIFRLRKPP 389

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
           E R KV +I+A+  +   R     +  +  D    I   Y    +    +R++       
Sbjct: 390 EHRNKVLIIDASQEFKKGRA----QNELLPDHVAHIYTWYRDYADVEGIARVVTLEEIAT 445

Query: 476 RRIKVLRPLRMSFILDKTGLARLEA 500
               +  P  +   +++  L+  E 
Sbjct: 446 NDYILNIPRYVEPRVEQEVLSIEET 470


>gi|49484939|ref|YP_042160.1| putative type I restriction enzyme methylase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49243382|emb|CAG41799.1| putative type I restriction enzyme methylase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 595

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 186/557 (33%), Positives = 300/557 (53%), Gaps = 38/557 (6%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + + +    AN IW  A+ L G +K  ++GKVILP T+++RL   L  TR  V +     
Sbjct: 9   QTSINVQKQANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLLKTRDKVLKTAENT 68

Query: 63  GGSNIDLES--FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
              N  +        +GYSFYNTS Y+  TL     N  +N  +Y+  FS+N + I  +F
Sbjct: 69  QSINDVMRERLLKNASGYSFYNTSLYTFETLLADPANIESNFRAYLNGFSENMQDILNNF 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F   I  +    +L+ + + F+  +  L PD +    M  ++E L+R+F    +E A  
Sbjct: 129 KFDVEITTMADNDVLFYVIQEFNKADAYLGPDKMTSTDMGYVFEELVRKFSESYNEEAGA 188

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RD+++L T LLL  D     +   + +T+YD T GT   L+     + D     ++
Sbjct: 189 HFTSRDIIYLMTDLLLIEDKDTLFKE-HVFKTVYDQTMGTSQMLSAMTERIHDMNDTAEV 247

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQEL PET+A+  A  +IR  + +       N+  GSTL+ D F G  F YC+
Sbjct: 248 ----ATFGQELNPETYAISKADTMIRGGDPE-------NMALGSTLTSDRFEGFTFDYCI 296

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W+KD+ AV+ EH+ GELGRFG GLP++SDG +LF ++  +KL+      GR 
Sbjct: 297 SNPPFGVDWKKDQKAVKAEHELGELGRFGVGLPRVSDGQLLFQLNGISKLK----ETGRM 352

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + S LF+G  G+GES IR++++END +E I+ LP DLF+ T I+TY+WI++  K+ 
Sbjct: 353 AIIHNGSALFSGNPGAGESLIRQYVIENDWLEGIIQLPNDLFYNTGISTYIWIITKDKSP 412

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------SRM 467
           ER+GKVQL++A++++   R    ++R+ I++  R  I+  Y    + ++        S++
Sbjct: 413 ERQGKVQLVDASNMYEKRRKNIGEKRVDISEACREMIVQAYGEFNDKEYYLGDGTVESKI 472

Query: 468 LDYRTFGYRRIKVLRPLR---MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           L   +FG+ R+ + RP R      +  K G   ++ ++   +  PL +    DI +   +
Sbjct: 473 LKNESFGFTRVTIERPQRDENGDIVYKKNGSKSVDTNLRDTEDIPLTE----DINEYFER 528

Query: 525 QIYPYGWAESFVKESIK 541
           +I P+       ++  K
Sbjct: 529 EILPFNQDAWMDRKKDK 545



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           ++D   D V   NG    DTNL + E++P  E I +YF RE+ P   DA++D+       
Sbjct: 489 QRDENGDIVYKKNGSKSVDTNLRDTEDIPLTEDINEYFEREILPFNQDAWMDR------- 541

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            +  ++GYEI F R FY+Y P    + I   +K +E  I    + ++ +
Sbjct: 542 -KKDKIGYEIPFTRLFYKYTPPEPSEVISERIKQLEESIIKNFQALSGK 589


>gi|124485663|ref|YP_001030279.1| hypothetical protein Mlab_0841 [Methanocorpusculum labreanum Z]
 gi|124363204|gb|ABN07012.1| N-6 DNA methylase [Methanocorpusculum labreanum Z]
          Length = 608

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/569 (32%), Positives = 295/569 (51%), Gaps = 44/569 (7%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
              + +A+FIW  A+D L   +    +  VILP T++RR++  LEPT+  V  +      
Sbjct: 7   AQVSKIASFIWNIADDCLRDVYSRGKYRDVILPMTVIRRIDAVLEPTKEKVIAQKKMLDK 66

Query: 65  SNIDL--ESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118
           +NI    ++    +G +FYN+S + L  L         + +  +Y+  +S N + I   F
Sbjct: 67  ANIKAQSDALCLASGQAFYNSSPFCLKDLTSRAKPQQLKADFIAYLDGYSPNIQEILNKF 126

Query: 119 DFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHLIR 164
            F + I  + +AG+L  + + F  S I L  + +             + +M  ++E L+R
Sbjct: 127 KFRNQIDTMIEAGILGAVIEKFVSSEINLSMNDILDKQGGVRMPGLDNHMMGTLFEELLR 186

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F  E +E A +  TPRDVV L   L+  P     ++   +   LYD  CGTGG LT   
Sbjct: 187 KFNEENNEEAGEHFTPRDVVELMADLVFMPIADKIEDGTYL---LYDDACGTGGMLTVGE 243

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +    +     +   GQE  PET+A+C + ML++      + + +++I  GSTLS 
Sbjct: 244 QRLNELAIKYNKKFSVHLFGQETVPETYAICKSDMLLKG-----KGEQAEHIFYGSTLSN 298

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKISDGSM 336
           D F G  F + +SNPP+GK W+ D + +    K+    RF           +P++SDG M
Sbjct: 299 DGFAGHEFDFMISNPPYGKSWKTDAEKMGG-KKDISDPRFVVLHKNEELSLIPRVSDGQM 357

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL +  +K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+ALP +
Sbjct: 358 LFLANNVSKMKSKTKLGSRIAEVHNGSSLFTGDAGSGESNFRRYIIENDLVEAIIALPEN 417

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           +F+ T IATY+W+LSN+K+E RRGKVQLI+AT   T +R N GKK   ++ +Q+ +I+ +
Sbjct: 418 IFYNTGIATYIWVLSNKKSESRRGKVQLIDATSFKTPLRKNLGKKNCEVSFEQKNEIVKL 477

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADITWRKLSPLHQ 512
            +  +  +FS++     F Y  I V RP      + + DK G  + +AD+   ++ P   
Sbjct: 478 LIDFKENEFSKIFRNEEFLYWSITVERPKVDEAGNVVKDKKGSPKADADLRDVEMVPY-- 535

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +   I   M  ++ PY        +  +
Sbjct: 536 VYEGGIEAFMKNEVLPYSPDAWVDDKKTE 564


>gi|225868038|ref|YP_002743986.1| type I restriction enzyme methylase protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701314|emb|CAW98331.1| putative type I restriction enzyme methylase protein [Streptococcus
           equi subsp. zooepidemicus]
          Length = 597

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 196/553 (35%), Positives = 294/553 (53%), Gaps = 37/553 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---KYL 60
            T +    A+ IW  A+ L G +K  ++GKVILP T+++RL   L PTR  V E      
Sbjct: 15  MTTNIKEKASLIWSIADILRGLYKPHEYGKVILPMTVIKRLHDTLLPTRDRVLEVSKTLS 74

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
               + I        +GY FYNTS ++ ++L     N + N  +++  FS+N + I ++F
Sbjct: 75  NIKVAQIRDRKLTDTSGYKFYNTSNFTFNSLLSDPDNIQENFYAFLNGFSENVRDILDNF 134

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +F   I+++     L+ + + F+  +  L  DTV    M  I+E L+RRF     E A  
Sbjct: 135 EFDEEISKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDAGA 194

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RD+++L T +LL  +    K    ++RT+YD T GT   L+  M  +    ++   
Sbjct: 195 HFTSRDIIYLMTDILLIDEKPSDKP---IVRTIYDQTMGTSQMLSAMMERIKALDAN--- 248

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +   GQEL PET+A+  A  +IR    D       N+  GSTLSKD F+G  F Y +
Sbjct: 249 -ADVTTFGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSKDAFSGYTFDYLI 300

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W+KD+ AV++E + GE GRFG GLPKISDG +LF ++  +KL+      GR 
Sbjct: 301 SNPPFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLK----DTGRM 356

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + S LF+G AG GES IR +++ ND +EAI+ LPTDLF+ T I+TY+WI++  K E
Sbjct: 357 AIIHNGSALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNKVE 416

Query: 417 ERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRM 467
           ERRGKVQL++A+  +   R N G K+  I   QR  I+  Y    N  +        S++
Sbjct: 417 ERRGKVQLLDASRAFVKRRKNIGDKKVDIEKAQRELIVQAYGEFANQIYIEGDTAVESKI 476

Query: 468 LDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            D   FGYR++ V  P+     + + +K G A  +      +  PL +     I + ++ 
Sbjct: 477 FDNNFFGYRKVVVETPMYDEDGNIVRNKNGKATPDTSKRNTEDIPLTEDVDEYITREVLP 536

Query: 525 QIYPYGWAESFVK 537
                   +S  K
Sbjct: 537 FNPDAWVDDSKTK 549



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 23/229 (10%)

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   +   D++ +     +  ++       RR KV        +       +   +I  +
Sbjct: 388 EAIIQLPTDLFYNTGISTYIWIITKNKVEERRGKV------QLLDASRAFVKRRKNIGDK 441

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
           K+        L +          Y   ++ V+  I  N     +           +    
Sbjct: 442 KVDIEKAQRELIVQAYGEFANQIYIEGDTAVESKIFDNNFFGYR---------KVVVETP 492

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
             D   + V + NG+  PDT+    E++P  E + +Y  REV P  PDA++        D
Sbjct: 493 MYDEDGNIVRNKNGKATPDTSKRNTEDIPLTEDVDEYITREVLPFNPDAWV--------D 544

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
               ++GYEI F R FY+YQ     + I   +K +E +I    E ++ +
Sbjct: 545 DSKTKIGYEIPFTRLFYKYQAPENSETIAKRIKELEEKIVKNFESLSGQ 593


>gi|170731315|ref|YP_001776748.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
 gi|167966108|gb|ACA13118.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
          Length = 763

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/586 (31%), Positives = 288/586 (49%), Gaps = 48/586 (8%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTSE 85
              +  VILPFT+LRRL+  LE T+ AV E  K+L          +    AG +FYN SE
Sbjct: 2   RGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVAEQDGALRMAAGQAFYNVSE 61

Query: 86  YSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           ++L+ L ++      R++  +Y+  FS + + I   F+F + I +L  + +L  + ++F 
Sbjct: 62  FTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFL 121

Query: 142 GIELHPDTVP--------------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             E++   +P              +  M  ++E LIRRF  + +E A +  TPRDVV L 
Sbjct: 122 NPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLM 181

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL  P     + S     +LYD +CGTGG LT A   +      H     +   GQE+
Sbjct: 182 AKLLFLPVAERIESSTY---SLYDGSCGTGGMLTVAEEALHALAEQHGKEVSIHLFGQEI 238

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             ET+A+C A +L++   ++ +  +    +  STLS D F  + F + +SNPP+GK W+ 
Sbjct: 239 SDETYAICKADLLLKGEGAEAQNIVGGADK--STLSADQFHSRAFDFMISNPPYGKSWKT 296

Query: 308 DKDAVEKEHKNGELGRF---------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           D + +    K     RF            L + SDG ++F ++   K++     G R A+
Sbjct: 297 DLERMGG-KKGFSDPRFIVSHGGDSEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIAL 355

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ T IATY+W+L+N+K E R
Sbjct: 356 VHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKAEAR 415

Query: 419 RGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
           RGKVQLI+A+  +  + RN GKK   +      +ILD+Y+ + +    S+  D + FGY 
Sbjct: 416 RGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLGQAQEAAQSKWFDTQDFGYW 475

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKL---------SPLHQSFWLD--ILKPMMQQ 525
           +I + RPLR+   L    +  L        L           L+  F      ++  ++ 
Sbjct: 476 KITIERPLRLKSQLSDERIESLRFATGDEALRAEIYATHGEALYTEFAKRKPAIEAWLKG 535

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
                  ++   +S   NEA   +           ++A   +  +A
Sbjct: 536 EDENEDDDNEDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKA 581



 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 43/222 (19%)

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
             P     +  K     L+A  TW++         +++ +   Q +    + +     + 
Sbjct: 554 EAPAARKAVPVKRRKKLLDAS-TWQR-----DKALMEVAQRAQQTLGHAVFDDHNAFCAC 607

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG--------------------- 579
                K    + S         A   +D  A PV                          
Sbjct: 608 FDAVCKAQDARLSAPEKKVIYKAVSWRDDAALPVIAKRSKLKAGDYFEPGFDGAYLETVG 667

Query: 580 ------EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
                 E+ PD+ L + E VP  E   I  +F REV PH PDA+I             +V
Sbjct: 668 KDRFMVEYEPDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWIA--------TNKTQV 719

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GYEI+F+R+FY+  P R L +I A++  +E Q   LL ++  
Sbjct: 720 GYEISFSRYFYKPVPLRTLAEIRADILVLEQQTEGLLHKIVG 761


>gi|262196002|ref|YP_003267211.1| type I restriction-modification system, M subunit [Haliangium
           ochraceum DSM 14365]
 gi|262079349|gb|ACY15318.1| type I restriction-modification system, M subunit [Haliangium
           ochraceum DSM 14365]
          Length = 633

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/528 (23%), Positives = 207/528 (39%), Gaps = 42/528 (7%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--AFGG 64
           + A L  ++W  A+ L G    +D+   I     L+RL    E     +  + L  A   
Sbjct: 139 TTAQLERYLWAAADILRGQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAVAW 198

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ++ D   F       +   SE +    G     N   + +   +     + E  DF+   
Sbjct: 199 NDPDEHQFFVPERARW---SEIAKVATGIGEALNVACAALEEANSGLDGVLEGIDFNDER 255

Query: 125 ---ARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  +  +L ++ ++F  + L + D     ++   YE+LI +F  +  +   +F TP
Sbjct: 256 RLGNTKNRDAVLARLVQHFGQLSLKNADLSEPDMLGRAYEYLIEKFADDAGKKGGEFYTP 315

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L   LL          +P     + DPTCG+GG L +  ++V   G +   P  L
Sbjct: 316 RKVVQLIVELL----------APTAGMRISDPTCGSGGMLIECAHYVERQGGN---PRNL 362

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             HGQE    T A+C   ML+  L   P   + K          D      +   ++NPP
Sbjct: 363 TLHGQEKNLGTWAICKMNMLLHGL---PSARIEKGDTIRDPRLLDNGALLVYDRVIANPP 419

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F       + A    H     GRF  GLP  + G + FL H+   L    N GGR  +V+
Sbjct: 420 FSLDEWGVEVAEGDGH-----GRFRFGLPPKTKGDLAFLQHMVATL----NEGGRLGVVM 470

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G +   E  IR  LL  DL EA++ L  +LF+ T I   + +LS  K   R+G
Sbjct: 471 PHGVLFRGSS---EGRIRSKLLAEDLFEAVIGLAPNLFYGTGIPAAVLVLSRDKARARKG 527

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYRRIK 479
           KV  ++A+  + +       +  + D    +I   +   R+  +F+R++           
Sbjct: 528 KVLFVDASSEFEAGSA----QNYLRDVHVTKIARAFHEYRDVERFARVVPLAEIEQNEGN 583

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +     +    ++  +    A    R+L          + + + +  Y
Sbjct: 584 LNISRYVDTSQEEERIDVAAAVARLRELEAARDEAEATMHRFLEELGY 631


>gi|225026440|ref|ZP_03715632.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353]
 gi|224956232|gb|EEG37441.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353]
          Length = 592

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 187/561 (33%), Positives = 282/561 (50%), Gaps = 40/561 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T    ++   A  IW  A+DL G +K  ++G VILP T+++R    L  T  AV + Y 
Sbjct: 7   ITNVGKNSNDTAALIWSVADDLVGAYKPHEYGLVILPMTVIKRFHDCLLLTHQAVLDTYK 66

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDF 118
                 +      K +GY FYNTS ++  TL +   N  +N ++Y+  FSDN + I    
Sbjct: 67  KVEKLAVKDGFLRKSSGYQFYNTSPFTFKTLIADPENIVDNFKAYLNGFSDNVQDILARM 126

Query: 119 DFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF S I  +E+AGLLY++  +F     +  P+ +    M  I+E+L+RRF    +E A  
Sbjct: 127 DFDSQIKHMEEAGLLYQVISDFCTDKGDFSPEKISAVDMGYIFENLVRRFSESYNEEAGA 186

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RD+++L + LL+  D++ F    G+ +T+YD T GT   LT     +    +    
Sbjct: 187 HFTSRDIIYLMSDLLVAGDESAFT-GDGISKTVYDMTMGTSQMLTCMEERLKQMDAD--- 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +   GQE  P T  +  A MLIR  + +       N+Q G TLS D F+G +F Y +
Sbjct: 243 -ADVTVFGQEFNPFTFGIAKADMLIRGGDPN-------NMQFGDTLSDDKFSGYKFDYII 294

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W++++  V  E K G  GRF PGLP   DG +LF+++   KL+      G+ 
Sbjct: 295 SNPPFGIPWKREEKEVTAEFKKGTAGRFAPGLPAKGDGQLLFMLNGLAKLK----DDGQM 350

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + S LFNG AGSG SEIRR+L+END ++AIV LP + F+ T IATY+WI+   K  
Sbjct: 351 AIIQNGSSLFNGDAGSGPSEIRRYLIENDWLDAIVQLPNNAFYNTGIATYIWIVMKNKPV 410

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF----------- 464
             +GKVQLI+A+   +S R     + + I    R  I+  Y +  +  +           
Sbjct: 411 THQGKVQLIDASACCSSRRKNIGSKNVDITKACRDLIIKAYGAYVDETYNGVDENDNAII 470

Query: 465 --SRMLDYRTFGYRRIKVLRPLRMSF--ILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             S+++D    GY +I V  P       I+ K     ++      +  PL +    DI  
Sbjct: 471 VKSKVMDAIDLGYNKIVVETPQLDEDGNIVMKKKKPVVDKSKRDTENVPLAE----DIDA 526

Query: 521 PMMQQIYPYGWAESFVKESIK 541
              +++ PY       K   K
Sbjct: 527 YFEREVIPYNPQAWIDKAKTK 547



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D   + V     + + D +  + ENVP  E I  YF REV P+ P A+I        DK 
Sbjct: 494 DEDGNIVMKKK-KPVVDKSKRDTENVPLAEDIDAYFEREVIPYNPQAWI--------DKA 544

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             +VGYEI F R FY+YQ       I A ++  E  +   L  +  
Sbjct: 545 KTKVGYEIPFTRTFYEYQQIEPSDVIAARIEYYEKSLMAKLHNLFG 590


>gi|88809187|ref|ZP_01124696.1| Type I restriction-modification system M subunit [Synechococcus sp.
           WH 7805]
 gi|88787129|gb|EAR18287.1| Type I restriction-modification system M subunit [Synechococcus sp.
           WH 7805]
          Length = 627

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/567 (25%), Positives = 228/567 (40%), Gaps = 47/567 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + L +F+WK+A+ L G    ++F   I     L+RL  A E  R  V   YL  G S 
Sbjct: 60  TLSQLESFLWKSADILRGSMDASEFKDYIFGMLFLKRLSDAFEEAREGVIAYYLGKGKSQ 119

Query: 67  IDLESFVKVAGY---SFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFEDF 118
            + E           +FY   +     L           N     I   +   + +    
Sbjct: 120 SEAEDLADDQDEYDKTFYVPEKARWQNLKDLKHDIGAELNKATEAIEEHNRTLEGVLVSI 179

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           DF+  I        L  +  ++S   L + D   D ++   YE+LI+ F     +   +F
Sbjct: 180 DFN--IKNKLNDRKLRDLLSHYSTFRLRNEDFERDDLLGAAYEYLIKMFADSAGKKGGEF 237

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +VV L  ALL           P     +YDPTCG+GG L    N++A   SH + P
Sbjct: 238 YTPNEVVKLLVALL----------KPHAGMRVYDPTCGSGGMLIQTRNYLA---SHGENP 284

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQE+   T A+C   M +  +      D+ K    G     +     RF   ++
Sbjct: 285 ANLQLFGQEMNLSTWAICKLNMFLHGV---ISADIRKGDTLGDPQHVENGEINRFDRVIA 341

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K      A     +N   GR+  G+P    G + F+ H+ + L    N  G   
Sbjct: 342 NPPFSLKNWGRDLA-----ENDGYGRYRYGVPPKDAGDLAFVQHMISSL----NQEGVMG 392

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+    LF G     E EIR+ +LE+DLIEA++ LP+ LF+ T I   L IL+  K+ E
Sbjct: 393 VVVPHGVLFRGGQ---EGEIRKGILEDDLIEAVIGLPSGLFYGTGIPAALLILNKTKSVE 449

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476
           R+GKV  INA   +   +N    + I+ D+   +++  + S  + K FSR++        
Sbjct: 450 RKGKVLFINAELDYQEGKN----QNILRDEDIEKVVGCFDSYNDIKRFSRVVPIEEIREN 505

Query: 477 --RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
              + + R    S   +   +   L   I  ++    +    L         +       
Sbjct: 506 DHNLNIRRYADTSPPPEPFDVRGILHGGIPIKETQDEYIQEILAGFDVSAVLVQKDAEYL 565

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAF 560
            F  E  + ++ +     AS + I   
Sbjct: 566 RFKDEIKEKSQIRQHLGNASDAVIQQV 592


>gi|126434813|ref|YP_001070504.1| N-6 DNA methylase [Mycobacterium sp. JLS]
 gi|126234613|gb|ABN98013.1| N-6 DNA methylase [Mycobacterium sp. JLS]
          Length = 371

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 215/382 (56%), Gaps = 22/382 (5%)

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP--NGGGRAAIV 359
             W   + AV  E++  G  GRFGPGLP++SDGS+LFLMHL +K++      GG R AIV
Sbjct: 1   MAWNTQQKAVTDEYEQRGFAGRFGPGLPRVSDGSLLFLMHLISKMQPVKGGEGGSRLAIV 60

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGES IR+W++ENDL++AI+ALPTD+F+ T IATY+WIL N K  +R+
Sbjct: 61  LNGSPLFTGGAGSGESNIRQWIIENDLLDAIIALPTDMFYNTGIATYIWILDNNKPAKRK 120

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYR 471
           GKVQLINA D++  +R   G KR+ +      +I  +Y S  N          S++    
Sbjct: 121 GKVQLINAVDMYGKMRKSLGSKRKELRPKDIERICHLYDSFRNEHGTDERPSHSKVFKSE 180

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            FGY  + V RPL++ F   +  +  + A  +  KL P  Q+   + L  ++   + +  
Sbjct: 181 EFGYSTVTVERPLQLRFTPTEEKVEEVLAQKSIDKLKPGEQAAVRNALTGLIG--WEWMH 238

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYE 591
            + FV E +K    K    K     +    +  G  D +A  VTD  G+  PD  L + E
Sbjct: 239 RDEFVTE-LKDALRKAGLTKPGAPLVKTIWSTIGEHDEKALIVTDSKGDTEPDPALRDTE 297

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           NVP  + I +YF REV PHVPDA+ID         +  +VGYEI F R FY+Y   R L+
Sbjct: 298 NVPLTDDIDEYFAREVVPHVPDAWIDH--------DKTKVGYEIPFTRHFYRYVAPRPLE 349

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           +I  +L+ +  +I  +L E+  
Sbjct: 350 EIQKDLRVLVGEIQAMLAEVGA 371


>gi|201067948|ref|ZP_03217819.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004472|gb|EDZ04965.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 469

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/530 (31%), Positives = 269/530 (50%), Gaps = 71/530 (13%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           + +  M  ++E LIR+F  E +E A +  TPR+++ L T L+  P     K+   +   +
Sbjct: 1   MSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWL---I 57

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YD  CG+GG LT++   + D     +    +  +GQE+ PET+A+C A MLI+       
Sbjct: 58  YDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKG------ 111

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFG 325
            +  + I+ GSTLS D     +F + LSNPP+GK WE D+  +  E K         RF 
Sbjct: 112 -ENPERIKFGSTLSNDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFS 169

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+   SDG M+FL+++ +K++     G R A V + S LFN    SG   IR++++END
Sbjct: 170 VGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKYIIEND 227

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRNE-GKKRR 442
            +EAIVALPT++F+ T I T++WI++N+K E ++GKVQLINAT+   ++ ++   G K+ 
Sbjct: 228 YLEAIVALPTNMFYNTGIPTFIWIITNKKPEHKKGKVQLINATNKEYFSKMKKSLGSKQN 287

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EAD 501
            +  +   +I  +++   + K  ++LD   FGY +I + +P  + F+ D    A+L + D
Sbjct: 288 EMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEFLKDDEKFAKLKDKD 347

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
               KL  L ++               +   E F+         K L VK  KS     I
Sbjct: 348 KILEKLEQLEKN------------PQDFKNREEFI---------KFLGVKLKKSEENLII 386

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
           +                            E +P    IQ+Y+  EV P+V +++I     
Sbjct: 387 D---------------------SDKTNNTEKIPLKTDIQNYYDTEVKPYVANSWIA---- 421

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                +   VGYEI FN++FY Y P RKL +ID+ELK +E +   LL ++
Sbjct: 422 ----WDSASVGYEILFNKYFYTYTPPRKLSEIDSELKALEKETQELLNKI 467


>gi|77920517|ref|YP_358332.1| type I restriction-modification system, M subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77546600|gb|ABA90162.1| type I restriction-modification system, M subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 504

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/531 (22%), Positives = 215/531 (40%), Gaps = 48/531 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                +SL+  +W+ A  L G     DF   I P    +RL    +   +A  E+     
Sbjct: 9   QNIDISSLSGHLWQAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYAAALEE----S 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFD 119
             +++   F +   +       +  +   S N  + L+  +        D    IF D  
Sbjct: 65  DGDVEFAQFPENHRFQVPENCHWKDARAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQ 124

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +++   RL  A LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F T
Sbjct: 125 WTNK-ERLSDA-LLKDLLEHFSSLNLGNEHCKADILGQAYEYLIKKFADLTNKKAGEFYT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L          +P    T+YDP CGTGG L +A++HV + G    +  +
Sbjct: 183 PRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEHGGDEHLM-L 231

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYC 295
              +GQE    T ++    + +   E         +I++G TL    F    +   F   
Sbjct: 232 GKLYGQEKNLTTSSIARMNLFLHGAED-------FHIERGDTLRLPAFYSGDSLATFDCV 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K   D         N   GR   GLP    G   ++ H+   +       GR
Sbjct: 285 IANPPFSLKKWGD-----DAWTNDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARKTGR 336

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+VL    LF     S E +IR  LLE D++EA++ L  ++F+ T +A  + +  + K 
Sbjct: 337 MAVVLPHGVLFRM---SKEGKIRHKLLEMDILEAVIGLGKNIFYGTGLAPCVLVFRDSKP 393

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
           ++ R KV  I+A+  +      G+ +  +  +    I   Y   ++     R++      
Sbjct: 394 KDHRQKVLFIDASKEF----KTGRAQNELLPEHVDNIHRWYEDYQDVEGICRVVTLDEIR 449

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                +  P  +  ++++  +    A    ++      +    +   + ++
Sbjct: 450 ENDFNLTIPRYVEPVIEEESITIDRAIANLKEALQAACAAEDRLKALLEKE 500


>gi|254448309|ref|ZP_05061771.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
 gi|198262176|gb|EDY86459.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
          Length = 580

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/521 (23%), Positives = 211/521 (40%), Gaps = 47/521 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T +   L +F+W+ A+ L G+   +++   I     L+RL  A E  + +V + Y+  G
Sbjct: 3   QTITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYMGKG 62

Query: 64  GSNIDLESFVKVAGY---SFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIF 115
            S                +FY         +           N     I   + + + + 
Sbjct: 63  KSEDQARELADDEDEYDKTFYIPPVARWGAIKDLKHDIGAELNKATEAIEEHNGSLEGVL 122

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
              DF+  I        L  +  +FS   L  +      ++   YE+LI+ F     +  
Sbjct: 123 VSIDFN--IKNKLSDKKLQDLLSHFSRHRLRNEDFERPDLLGTAYEYLIKMFADSAGKKG 180

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +VV L  +LL           P     +YDPT G+GG L    NH+A   +H 
Sbjct: 181 GEFYTPSEVVQLLVSLL----------KPHAGMRIYDPTAGSGGMLVQTRNHLA---THG 227

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           + P  L  +GQE+   T A+C   M +  +      D+ K             +   F  
Sbjct: 228 ENPSNLSLYGQEMNLNTWAICKMNMFLHGV---YSADIRKGDTLRDPQHTQGGSLMTFDR 284

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K        ++E +N   GRF  G P    G + F+ H+   L    N  G
Sbjct: 285 VIANPPFSLKKWG-----KEEAENDPYGRFPYGTPPKDAGDLAFVQHMIASL----NAEG 335

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              +V+    LF    G+ E  IR+ +LE+DL+EA+V LP  LF+ T I   L I++  K
Sbjct: 336 MMGVVMPHGVLFR---GASEKAIRKGILEDDLLEAVVGLPAALFYGTGIPACLLIINKNK 392

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
            +ER+GKV  IN+   +   +N    +  +      +I++ + +  + K +S+++     
Sbjct: 393 PQERKGKVLFINSELEYEEGKN----QNKLRQQDIEKIVNTFENFADIKRYSKVVPLEEI 448

Query: 474 GYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
                 + + R    S   +   + A L   I  R++   +
Sbjct: 449 EENDFNLNIRRYADTSPPPEIYDVRAILHGGIPVREVENEY 489


>gi|303242150|ref|ZP_07328640.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302590337|gb|EFL60095.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 588

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 193/554 (34%), Positives = 291/554 (52%), Gaps = 35/554 (6%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T + +  +N IW NA  L G +K  ++GKVILP T+++R    L PTR  V E Y   
Sbjct: 9   QTTINISEKSNMIWNNANHLVGLYKPHEYGKVILPMTVIKRFHDTLLPTRDKVLETYEKV 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        +GYSFYNTS+++  +L   + +   N  +Y+  FSDN   I  +F+F
Sbjct: 69  KNFEVKEGFLESASGYSFYNTSKFTFDSLLSDAEHIEENFRTYLNGFSDNVHDILANFEF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              I +L    +L+ I + F+     L  D +    M  I+E LI+ F    +E A    
Sbjct: 129 DKEITKLANNNILFFIIQEFNKKTSYLGADLITSVDMGYIFEDLIKTFSETYNEEAGAHF 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T RD+++L T LL+  +     E+ G+++T+YD T GT   L      +    +  +   
Sbjct: 189 TSRDIIYLMTDLLICDEKDSMLEN-GVVKTVYDQTMGTSQMLGCMEERLHALDADAE--- 244

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +   GQE  PET+A+  A MLIR   +D       N++ G TLS D F+G  F YC+SN
Sbjct: 245 -IRLFGQEFNPETYAIAKADMLIRGGNAD-------NMKFGDTLSDDKFSGYTFDYCISN 296

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG  W+++++AV+ E+K G+ GRFG GLPKISDG MLF+++  +KL+      G+ AI
Sbjct: 297 PPFGIDWKREEEAVKAENKLGDKGRFGAGLPKISDGQMLFMLNGVSKLK----STGKMAI 352

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF+G AGSGESEIRR+L+END I+AI+ L TD F+ T I TY+WI++  K   R
Sbjct: 353 IQNGSPLFSGDAGSGESEIRRYLIENDWIDAIIQLSTDTFYNTGITTYIWIITKNKPAHR 412

Query: 419 RGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------SRMLD 469
            GK+QLI+A+ +    R     +R  I D+ R  I+  Y    N  +        S+++D
Sbjct: 413 EGKIQLIDASKMAEQRRKSIGNKRYDITDECRDLIVTAYGEFLNKVYTLGDKTCESKVID 472

Query: 470 YRTFGYRRIKVLRPLRMS--FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
               GY +I V  PL      I+ K     ++      +  PL +   +   +    ++ 
Sbjct: 473 NVDLGYHKITVETPLYDENGNIVIKNKKPVVDTSKRDTENVPLTEDIDVYFKR----EVN 528

Query: 528 PYGWAESFVKESIK 541
           PY       K   K
Sbjct: 529 PYNKDAFIDKSKTK 542


>gi|302343962|ref|YP_003808491.1| type I restriction-modification system, M subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301640575|gb|ADK85897.1| type I restriction-modification system, M subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 505

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/536 (22%), Positives = 214/536 (39%), Gaps = 58/536 (10%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M+   G+         +L+  +W+ A  L G     DF   I P    +RL    +   +
Sbjct: 1   MSRKNGNNNSVDLDIGTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYA 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----D 109
              E+       + +   F +   +       +      S N  + L+  +        D
Sbjct: 61  VALEE----SDGDAEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQANPD 116

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
               IF D  +++   RL  A LL  + ++FS + L  +     ++   YE+LI++F   
Sbjct: 117 TLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFADL 174

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            ++ A +F TPR VV L   +L          +P    T+YDP CGTGG L +A++HV +
Sbjct: 175 TNKKAGEFYTPRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKE 224

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-- 287
            G    +  +   +GQE    T ++    + +   E         +I++G TL    F  
Sbjct: 225 HGGDENLM-LGKLYGQEKNLTTSSIARMNLFLHGAED-------FHIERGDTLRLPAFYS 276

Query: 288 --TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             +   F   ++NPPF  +   D         N   GR   GLP    G   ++ H+   
Sbjct: 277 GDSLATFDCVIANPPFSLEKWGD-----DVWINDPYGRNFAGLPPAKSGDFAWVQHMVKS 331

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +       GR A+VL    LF     S E EIRR LLE D++EA++ +  ++F+ T +A 
Sbjct: 332 M---ARKTGRMAVVLPHGVLFRM---SKEGEIRRKLLEMDILEAVIGVGQNIFYGTGLAP 385

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +  + K +  R KV  I+A+  +      G+ +  +  +   +I   Y   ++    
Sbjct: 386 CVLVFRDSKPKAHRQKVLFIDASKEF----KTGRAQNELLPEHVDKIHRWYEGYQDVEGV 441

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            R++           +  P  +  ++++     +  D     L    Q+ +    +
Sbjct: 442 CRVVTLDEIRENDFNLNIPRYVEPVIEEES---MTIDQAIANLKESLQAAYAAEDR 494


>gi|78358468|ref|YP_389917.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220873|gb|ABB40222.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 505

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 218/537 (40%), Gaps = 47/537 (8%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M+   G+         +L+  +W+ A  L G     DF   I P    +RL    +   +
Sbjct: 1   MSRKNGNNNPVDLDIGTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYA 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----D 109
              E+       +++   F +   +       +      S N  + L+  +        D
Sbjct: 61  VALEE----SDGDVEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQANPD 116

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
               IF D  +++   RL  A LL  + ++FS + L        ++   YE+LI++F   
Sbjct: 117 TLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNKHCKADILGQAYEYLIKKFADL 174

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            ++ A +F TPR VV L   +L          +P    T+YDP CGTGG L +A++HV +
Sbjct: 175 TNKKAGEFYTPRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKE 224

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G    +  +   +GQE    T ++    + +   E D   + S  ++  +  S D    
Sbjct: 225 HGGDENLM-LGKLYGQEKNLTTSSIARMNLFLHGAE-DFHIERSDTLRLPAFYSGDSLA- 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   ++NPPF  +   D         N   GR   GLP    G   ++ H+   +   
Sbjct: 282 -TFDCVIANPPFSLEKWGD-----DVWINDPYGRNFAGLPPAKSGDFAWVQHMIKSM--- 332

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+VL    LF     S E EIRR LLE D++EA++ L  ++F+ T++A  + +
Sbjct: 333 ARKTGRMAVVLPHGVLFRM---SKEGEIRRKLLEMDMLEAVIGLGQNIFYGTSLAPCVLV 389

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
             + K +  R KV  I+A+  +      G+ +  +  +    I   Y   ++     R++
Sbjct: 390 FRDSKPKAHRQKVLFIDASKEF----KTGRAQNELLPEHVDNIHRWYEGYQDVEGICRVV 445

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                      +  P  +  ++++  +   +A +  ++      +    +   ++++
Sbjct: 446 TLDEIRENDFNLNIPRYVEPVIEEESMTIDQAIVNLKESLQAAYAAEDRLKGLLLRE 502


>gi|120597148|ref|YP_961722.1| type I restriction-modification system, M subunit [Shewanella sp.
           W3-18-1]
 gi|120557241|gb|ABM23168.1| type I restriction-modification system, M subunit [Shewanella sp.
           W3-18-1]
          Length = 574

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/495 (26%), Positives = 213/495 (43%), Gaps = 55/495 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   L +F+W+ A+ L G+   +++   I     L+RL  A E  + +V + YL
Sbjct: 1   MTQK-LTLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAK 112
             G +    E+  +       +F+       S L         T N     I  ++ + +
Sbjct: 60  DKGKTQEQAEALAQDEDEYDKTFFVPQTARWSELKDLKHDIGATLNKATEAIEEYNSSLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            +    DF+  I        L  +  +FS   L  +      ++   YE+LI+ F     
Sbjct: 120 GVLVTIDFN--IKNKLSDKKLRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G
Sbjct: 178 KKGGEFYTPSEVVSLLVALL----------KPKAGMRIYDPTSGSGGMLVQTRNYLAAHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +   P  L   GQE+   T A+C   M +  +       LS +I++G TL +   T   
Sbjct: 228 EN---PGNLSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGG 277

Query: 292 ----FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               F   ++NPPF   KW KD      E  N   GRF  G P    G + F+ H+    
Sbjct: 278 ELMAFDRVIANPPFSLAKWGKD------ECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS- 330

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G   +V+    LF G +   E  IR+ +LE+DL+EA++ LP+ LF+ T+I   
Sbjct: 331 ---TNAEGMVGVVMPHGVLFRGSS---EKAIRQGILEDDLLEAVIGLPSGLFYGTSIPAC 384

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           L I++ RK  +R+GKV  IN    +   +N    +  +      +I+  + + +N K ++
Sbjct: 385 LLIINKRKAADRKGKVLFINGELEYEEGKN----QNKLRPQDIEKIVTTFNNYQNIKRYA 440

Query: 466 RMLDYRTFGYRRIKV 480
           +++D          +
Sbjct: 441 QVVDISEIADNDYNL 455


>gi|117922226|ref|YP_871418.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
 gi|117614558|gb|ABK50012.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
          Length = 574

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 129/495 (26%), Positives = 211/495 (42%), Gaps = 55/495 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + YL
Sbjct: 1   MTQK-LTLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAK 112
             G +    E+  +       +F+       S L         T N     I  ++ + +
Sbjct: 60  GKGKTKEQAEALAQDEDEYDKTFFVPKSARWSALKDLKHDIGATLNKATEAIEEYNSSLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            +    DF+  I        L  +  +FS   L  +      ++   YE+LI+ F     
Sbjct: 120 GVLVTIDFN--IKNKLSDKKLRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G
Sbjct: 178 KKGGEFYTPSEVVSLLVALL----------KPKAGMRIYDPTSGSGGMLVQTRNYLAAHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
            +   P  L   GQE+   T A+C   M +  +       LS +I++G TL +   T   
Sbjct: 228 EN---PGNLSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGG 277

Query: 290 --KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               F   ++NPPF   KW KD      E  N   GRF  G P    G + F+ H+    
Sbjct: 278 ELMTFDRVIANPPFSLAKWGKD------ECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS- 330

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G   +V+    LF G +   E  IR+ +LE+DL+EA++ LP+ LF+ T I   
Sbjct: 331 ---TNAEGMVGVVMPHGVLFRGSS---EKAIRQGILEDDLLEAVIGLPSGLFYGTGIPAC 384

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           L I++ RK  ER+GKV  IN    +   +N    +  +      +I+  + + +N K ++
Sbjct: 385 LLIINKRKAAERKGKVLFINGELEYEEGKN----QNKLRPQDIEKIVTTFNNYQNIKRYA 440

Query: 466 RMLDYRTFGYRRIKV 480
           ++++          +
Sbjct: 441 QVVELSEISDNDYNL 455


>gi|220931289|ref|YP_002508197.1| type I restriction-modification system, M subunit [Halothermothrix
           orenii H 168]
 gi|219992599|gb|ACL69202.1| type I restriction-modification system, M subunit [Halothermothrix
           orenii H 168]
          Length = 495

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 117/530 (22%), Positives = 219/530 (41%), Gaps = 38/530 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +   L + +W++A  L G    +D+   I     L+R+    +     ++ +  
Sbjct: 1   MSQETLTLDKLESHLWESANILRGSIDSSDYKNYIFGMLFLKRISDVFDEECEKMKAEGK 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                + D   F       + + S+ +       +  N     +   +   + +    DF
Sbjct: 61  EAFIDDPDFHDFFVPKRARWEHISKVTQ---DIGSHINKAFEVLEEHNKMLEGVLAPIDF 117

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +    RL    L  ++ ++FS   L    + D  ++   YE+LIR+F  +  +   +F T
Sbjct: 118 NDK-ERLPDHVL-EELIQHFSKYSLKNRDLEDPDILGRAYEYLIRQFADDAGKKGGEFYT 175

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L           P    ++YDP CG+GG L  +  H+ + G+       
Sbjct: 176 PRQVVKLLVEIL----------DPRPGMSVYDPCCGSGGMLIYSAEHLIEEGNDI---SE 222

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE    T A+C   ML+  L       ++K          D     +F   ++NP
Sbjct: 223 ISLYGQERNLNTWAICKMNMLLHGL---YDAKIAKGDTMRDPQFLDNGKLDQFDRVIANP 279

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
            + +     K   E E      GRF  G P  +    +++ H+        N  G+  +V
Sbjct: 280 MWNQSSWSKKYLQETE----PFGRFSYGFPPKNSADWVWIQHMLAS----ANKKGKIGVV 331

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L +  LF GR+   E +IR+ +L++DLIEA++ALP++LF+ T+    + IL+  KT ER+
Sbjct: 332 LDNGVLFRGRS---EGKIRKKVLKHDLIEAVIALPSNLFYNTSSPGCILILNKDKTVERK 388

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRI 478
            KV  I A + +    N    +  + +    +IL+ Y + E+  ++ R++D         
Sbjct: 389 NKVIFIYAEEDYKEGSN----QNYLREKDIEKILNAYKNFEDIERYCRVVDMEEIERNDY 444

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            +  P  +     +  +   E      KL    +    ++   + +  Y 
Sbjct: 445 NLNVPRYVDTTEPEEPIDVQEVIDNLNKLEEERKEIEEEMNGYLRELGYD 494


>gi|237653815|ref|YP_002890129.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625062|gb|ACR01752.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 498

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/518 (24%), Positives = 210/518 (40%), Gaps = 55/518 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + + A L + +W++A  L G     DF   I P    +R+    +     + ++  
Sbjct: 1   MHQPSITLAQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFE 116
                +  L  F +   +       ++     + N    L+  +        D    +F 
Sbjct: 59  ---TGDEQLAWFPESHRFQIPEDCHWNDVRAKAANVGAALQHAMREIEKANPDTLYGVFG 115

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  +S+   RL  A LL  + ++FS + L    V   ++ + YE+LI++F    ++ A +
Sbjct: 116 DAQWSNK-ERLSDA-LLKDLIEHFSKLPLGNGNVTSDLLGDAYEYLIKKFADATNKKAGE 173

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     K 
Sbjct: 174 FYTPRSVVRLMIDML----------DPREGETIYDPACGTGGMLLAAVQHVQEMHGDVKR 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----F 292
                 +GQE    T ++    + +  +E          I +G TL    F        F
Sbjct: 224 LWG-KLYGQEKNLTTSSIARMNLFLHGIED-------FKIVRGDTLRNPAFFDGDRLSAF 275

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  +        E    N   GR   GLP  S G   ++ H+   +    +G
Sbjct: 276 DCVIANPPFSLEKWG-----EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---ADG 327

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+VL    LF   A   E  IR+ LL+ DLIEA++ L  +LF+ T +A  + +L  
Sbjct: 328 TGRMAVVLPQGALFRKSA---EGGIRQKLLKLDLIEAVIGLAPNLFYGTGLAACILVLRK 384

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS-RMLDYR 471
           +K   RR KV + +A+ L+   R     +  +  +   QIL  Y   ++ + + R++   
Sbjct: 385 KKPAARRRKVLVADASRLFRRGRA----QNYLEAEHAAQILGWYRDFQDVQDAVRVVALD 440

Query: 472 TFGYRRIK------VLRPLRMSFILDKTGLARLEADIT 503
                         VL PL+         +A  +  + 
Sbjct: 441 EIEAEDWTLNISRYVLPPLQEDIPPLPEAIAAFKDALQ 478


>gi|294495709|ref|YP_003542202.1| type I restriction-modification system, M subunit
           [Methanohalophilus mahii DSM 5219]
 gi|292666708|gb|ADE36557.1| type I restriction-modification system, M subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 494

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/521 (24%), Positives = 223/521 (42%), Gaps = 49/521 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L  ++W  A  L G    +DF   I P    +R+    +       ++     G +
Sbjct: 5   SLSELEQYLWDAANILRGPVDASDFKAYIFPLLFFKRISDVYDEEYRQALDE----SGGD 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSS 122
            +  SF ++  Y     + ++     STN    L+           D    IF D ++ +
Sbjct: 61  EEYASFPELHDYIIPEGAHWNDVKDTSTNVGQALQHAFREIEKANQDKLYEIFGDVNWGN 120

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    LL  +  +FS   L    V   ++   YE+LI++F    +  A +F TPR 
Sbjct: 121 K-ERLSD-ELLNDLINHFSSKNLSKSYVEPDMLGQAYEYLIKKFADLTNRKAGEFYTPRT 178

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL   +L           P    ++YDP CG+GG L +A+++V   G   +    L  
Sbjct: 179 VVHLMGNIL----------KPQEKESIYDPACGSGGMLLEAVHYVNSSGGDERT---LKL 225

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T ++    + +  ++ D +      ++  S    D  +  +F   ++NPPF 
Sbjct: 226 YGQEKNLTTSSIARINLFLHGIQ-DFQIIRGDTLRNPSFHEGDQLS--QFDIVIANPPFS 282

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K    +        +   GR   G P  S+G   ++ H+ + +       GR AIVL  
Sbjct: 283 LKNWGQE-----HWSHDPFGRNIAGTPPKSNGDYAWVQHMISSMAPVT---GRMAIVLPH 334

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E +IR+ L+END++EA++ L  +LF+ T I+  + +   RK E R+ KV
Sbjct: 335 GALFRGAA---EGKIRKKLIENDMLEAVIGLGPNLFYGTGISACILVFRARKDESRKNKV 391

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIK 479
             I+A++ +   RN    +     +    +LD Y   E+    S+++D +        + 
Sbjct: 392 LFIDASEQFQKGRN----QNFFLQEHADNVLDWYEKYEDVEDISKLVDIKEIEENEFNLN 447

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           + R +R   ++++  L       T+++L+  +  F     K
Sbjct: 448 ISRYVRKKLVVEEIDLEE-----TFQELNQAYDEFLESEEK 483


>gi|77166354|ref|YP_344879.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254435849|ref|ZP_05049356.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
 gi|76884668|gb|ABA59349.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|207088960|gb|EDZ66232.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
          Length = 574

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 132/582 (22%), Positives = 224/582 (38%), Gaps = 57/582 (9%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +   L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + YL  G 
Sbjct: 4   NITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYLGKGK 63

Query: 65  SNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFE 116
           ++ +             +FY         L           N     I   + + + +  
Sbjct: 64  TDAEARELANDEDEYDKTFYIPPIARWGALKDLKHDIGTELNKATEAIEEVNPSLEGVLV 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAE 175
             DF+  I        L  + ++FS   L  +      ++   YE+LI+ F     +   
Sbjct: 124 SIDFN--IKNKLSDKKLRDLLRHFSRHRLRNEDFEHPDLLGTAYEYLIKMFADSAGKKGG 181

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G +  
Sbjct: 182 EFYTPSEVVRLLVALL----------KPQAGMRIYDPTAGSGGMLVQTRNYLARHGEN-- 229

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
            P  L   GQE+   T A+C   M +  +        S +I++G TL +   T       
Sbjct: 230 -PANLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGGELMT 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF  K        + E      GRF  G P    G + F+ H+   L    N
Sbjct: 282 FDRVIANPPFSLKKWG-----KDEADKDAYGRFPYGTPPKDAGDLAFVQHMIASL----N 332

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    LF    G+ E  IR+ +L++DL+EA++ LP  LF+ T I   L IL+
Sbjct: 333 AEGMMGVVMPHGVLFR---GASEKAIRQGILKDDLLEAVIGLPAALFYGTGIPACLLILN 389

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470
             K  ER GKV  IN    +   +N    +  +      +I+  +   RE  ++S+++  
Sbjct: 390 KNKPAERTGKVLFINGELEFQEGKN----QNKLRPQDMDKIVRTFDDYREIKRYSKVVSL 445

Query: 471 RTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                    + + R    S   +   + A L   I  R++    +    +IL+     + 
Sbjct: 446 ADIAGNDDNLNIRRYADTSPPPEIFDVRAILHGGIPVREVE--SEYIREEILEDFDVTMV 503

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
                E + +   +    + ++  A +             D 
Sbjct: 504 FVRRDERYFEFKPEIESKEAIREAAGEVDAKVIQQLERWWDK 545


>gi|312879435|ref|ZP_07739235.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310782726|gb|EFQ23124.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 506

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 115/525 (21%), Positives = 211/525 (40%), Gaps = 48/525 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W  A  L G     DF   I P    +RL    +   +   ++       +++ 
Sbjct: 17  TLFGYLWDAANILRGSVDAADFKTYIFPLLFFKRLSDVYDEEYAVALDE----SDGDVEF 72

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTIA 125
             F +   +       +        +  + L+  +        D    IF D  +++   
Sbjct: 73  AQFAENHRFQVPEDCHWKDVRATIAHIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK-D 131

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL    LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TPR VV 
Sbjct: 132 RLSD-VLLKDLIEHFSSLNLSNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSVVA 190

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L          +P    T+YDP CGTGG L +A++HV + G    +  +   +GQ
Sbjct: 191 LLVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEQGGDENLM-LGKLYGQ 239

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPF 301
           E    T A+    + +   E         ++Q+G TL    F        F   ++NPPF
Sbjct: 240 EKNLTTSAIARMNLFLHGAED-------FHVQRGDTLRVPAFYSGDNLATFDCVIANPPF 292

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K   D         N   GR   GLP    G   ++ H+   +       GR A+V+ 
Sbjct: 293 SLKKWGD-----DVWINDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARRTGRMAVVVP 344

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF     S E EIRR LLE D++EA++ L  ++F+ T +A  + +  +RK E  R K
Sbjct: 345 QGVLFRM---SKEGEIRRKLLEMDILEAVIGLGQNIFYGTGLAPCVLVFRDRKPEAHRWK 401

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKV 480
           V  I+A+  +      G+ +  +  +   +I   Y   ++     R++           +
Sbjct: 402 VLFIDASKEF----KTGRAQNELLPEHVDRIHRWYEGYQDVEGICRVVTQGEIRENDFNL 457

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             P  +  ++++  +   +A    ++      +    +   + ++
Sbjct: 458 NIPRYVEPVIEEESMTIHQATANLKESLQAAYAAEDRLKALLEKE 502


>gi|209695268|ref|YP_002263197.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238]
 gi|208009220|emb|CAQ79477.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238]
          Length = 587

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 118/495 (23%), Positives = 195/495 (39%), Gaps = 50/495 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S   L +F+W+ A+ L G+   ++F   I     L+RL  A E ++  V + YL
Sbjct: 1   MTNK-LSLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLG--STNTRNNLESY---IASFSDNAK 112
             G +    E           +F+       S L     N    L      I  F+   +
Sbjct: 60  DKGKTQAQAEELANDEDEYDSTFFIPENARWSVLKDLKHNIGEQLNKATESIEEFNSALE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            +    DF+  I        L  +  +F+   L  +      ++   YE+LI+ F     
Sbjct: 120 GVLVTIDFN--IKNKLSDKKLQDLLSHFNKYRLRNEDFDRPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L   LL           P     +YDPT G+GG L    N +   G
Sbjct: 178 KKGGEFYTPSEVVQLLVELL----------KPHAGMRIYDPTSGSGGMLVQTRNQLEKQG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      L  +GQE+   T A+C   M +  +++    D+ K          +      
Sbjct: 228 ENA---ANLSLYGQEMNLNTWAICKMNMFLHGVQN---ADIRKGDTLRDPQHTEGGELMS 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF  K        + E  N   GRF  G P    G + F+ H+        N
Sbjct: 282 FDRVIANPPFSLKKWG-----KDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS----TN 332

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    LF G +   E  IR+ +LE+DL+EA+V LP+ LF+ T I   L I++
Sbjct: 333 SEGMVGVVMPHGVLFRGSS---EKAIRQGILEDDLLEAVVGLPSGLFYGTGIPACLLIIN 389

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR------ENGKFS 465
             K   R+GKV  IN    +   +N    +  +  +   +I+  + +       +  +++
Sbjct: 390 KNKPSARKGKVLFINGELEFAEGKN----QNKLRPEDIAKIVTTFENHSFESQCDIKRYA 445

Query: 466 RMLDYRTFGYRRIKV 480
           R++           +
Sbjct: 446 RVVPLSEIAENDFNL 460


>gi|163788851|ref|ZP_02183296.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159876088|gb|EDP70147.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 603

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 180/624 (28%), Positives = 299/624 (47%), Gaps = 53/624 (8%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M   T S   + NFIW  A+D L   +    +  VILP T+LRRL+ ALE ++  V + +
Sbjct: 1   MNLDTQSLQPIINFIWTVADDVLINKYLENQYQDVILPMTVLRRLDLALEKSKDKVLKTH 60

Query: 60  LAFGGSNIDLESFVKVA----GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             F     +L+  +       G +FYNTS Y++  L     N  +N   Y+  +S+N + 
Sbjct: 61  NEFKSKMDNLDGLLTSETHGSGLAFYNTSPYTMKKLLDDPKNIDSNFLDYLNGYSENVQD 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I   F F + +  LE  G+ + + + F    +EL P+ +    M  ++E LIRRF  + +
Sbjct: 121 IISKFKFRNQLETLENGGITFSLIEKFCNPKVELRPEKISPMAMGYMFEDLIRRFNEKTN 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A    TPR+++ L T L+  P     +    +   +YDP  G+G  LT +  +  +  
Sbjct: 181 AAAGRHFTPREIIELMTHLVYLPVKEKIQNGTFL---VYDPCAGSGAMLTQSKKYATNPD 237

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K       +GQE   E +A C + ML++  + D  +  S   + G           +
Sbjct: 238 GEIKSKATFHLYGQENTGEMYATCKSDMLLKNEDPDKIKFGSTLSEYGF------EPNLK 291

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL---GRFGPGLP-------------KISDGS 335
           F++ L+NPP+G  W++D  ++       +     RF   +              + +DG 
Sbjct: 292 FNFMLTNPPYGTSWKEDLKSLTNSSNKKQDIVDTRFNLKIKNFKGELEEQTLASRSNDGQ 351

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           ++F++H+ +K++ P +GG R A V + S LF G AGSGES IR+++LENDL+E I+ LP 
Sbjct: 352 LMFMLHMLSKMKDPKDGGSRIASVHNGSALFTGDAGSGESGIRQYILENDLLECIIQLPN 411

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEG--KKRRIINDDQRRQ 451
           D+F+ T IATY+WILSN K E+R+GKVQLINA+  D ++    +    KR  +N +    
Sbjct: 412 DMFYNTGIATYIWILSNVKEEKRKGKVQLINASSKDEFSKKMRKPLGDKRVELNPNHILD 471

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR---MSFILDKTGLARLEADITWRKLS 508
           I ++Y   E  ++S++ +   FGY +I V +P R      + DK G  + + D+   +  
Sbjct: 472 IQNLYFDFEENQYSKIFNNEDFGYYQITVHQPERDEDGKIVTDKKGNPKSDKDLKDSENV 531

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
           P+ +    DI     +++ PY     + K        K +KV  +      F      ++
Sbjct: 532 PMTE----DIDTYFKREVIPYAPDAWYDK--------KKMKVGYNIPLTKHFYKYDELRN 579

Query: 569 PRADPVTDVNGEWIPDTNLTEYEN 592
                   ++ E   D  L E  +
Sbjct: 580 LNIITNEILSLEKETDGLLKEIID 603



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 8/107 (7%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
            +D     VTD  G    D +L + ENVP  E I  YF REV P+ PDA+         D
Sbjct: 504 ERDEDGKIVTDKKGNPKSDKDLKDSENVPMTEDIDTYFKREVIPYAPDAWY--------D 555

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           K+  +VGY I   + FY+Y   R L  I  E+  +E +   LL+E+ 
Sbjct: 556 KKKMKVGYNIPLTKHFYKYDELRNLNIITNEILSLEKETDGLLKEII 602


>gi|313107803|ref|ZP_07793977.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042
           [Pseudomonas aeruginosa 39016]
 gi|310880479|gb|EFQ39073.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042
           [Pseudomonas aeruginosa 39016]
          Length = 1005

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 217/572 (37%), Gaps = 48/572 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + + L + +W++A  L G     DF   I P    +R+    +     + ++  
Sbjct: 1   MSDQQITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEFQEIVDESG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        ++  Y  +         +G+   +  +     +  D    +F D  +
Sbjct: 61  DEQLAWFPESHRFQIPDYCHWEQVREKSINVGAA-LQWAMREIERANPDTLYGVFGDAQW 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S+   RL    LL  + ++FS + L    V   ++ + YE+LI++F    ++ A +F TP
Sbjct: 120 SNK-DRLSDP-LLKDLIEHFSKLPLGNKNVSSDLLGDAYEYLIKKFADATNKKAGEFYTP 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L   +L           P    ++YDP CGTGG L  A+ HV +     K     
Sbjct: 178 RSVVRLMIDML----------DPKEGESIYDPACGTGGMLLAAVQHVKELHGDVKRLWG- 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCL 296
             +GQE    T ++    + +  +E          I++G TL    F        F   +
Sbjct: 227 KLYGQEKNLTTSSIARMNLFLHGIED-------FKIERGDTLRNPAFFDGDRLATFDCVI 279

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  +        E    N   GR   GLP  S G   ++ H+   +       GR 
Sbjct: 280 ANPPFSLEKWG-----EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMAAVT---GRM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L N K  
Sbjct: 332 AVVLPQGALFR---KGVEGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACILVLRNCKPA 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS-RMLDYRTFGY 475
           +   KV + +A+ L+   R     +  +      +IL  Y    + + + R++       
Sbjct: 389 QFEKKVLIADASRLFRRGRA----QNFLEPKHAAEILGWYRGFTDVQDAVRVVSLDEIKA 444

Query: 476 RRIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                     VL PL+         +A  +  +   +     +   +     M   I+P 
Sbjct: 445 EDWTLNISRYVLPPLQEDIPPLPEAIATFKDALNRCR-EAEERLAQVMTAGGMAAMIHPS 503

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
                   ES     A  L+          FI
Sbjct: 504 KRITQQELESYLWGAAVLLRGLIDAGDYKQFI 535



 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 110/518 (21%), Positives = 215/518 (41%), Gaps = 42/518 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L +++W  A  L G     D+ + I P    +R+     E  ++A+ +       +
Sbjct: 507 TQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALVDSNGDLSYA 566

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                   ++   + +N    +   +G+   +  + +  ++  D    IF D  +++   
Sbjct: 567 QFAENHRFQIPEAAHWNDVRQTPRNVGAA-IQRAMRAIESANPDMLDGIFGDAPWTNR-D 624

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL    L   + ++FS   L    VP+  + N YE+LI++F  +    A +F T R VVH
Sbjct: 625 RLPDETLK-NLIEHFSTKTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVVH 683

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T LL          +P +  ++YDPTCGTGG L  A++ V   G  ++    L  +GQ
Sbjct: 684 LMTQLL----------APQVGESIYDPTCGTGGMLISALDEVKRSGGEYRT---LKLYGQ 730

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E    T ++    + +  +E     ++ +          +    ++F   L+NPP+  K 
Sbjct: 731 ERNLITSSIARMNLFLHGVED---FEIVRGDTLADPKHIEDDRLRQFDVILANPPYSIKQ 787

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
              +        + + GR   G P        F  H+   L    +  GR A++     L
Sbjct: 788 WNREA-----WSSDKWGRNSLGTPPQGRADYAFQQHILTSL----SAKGRCAVLWPHGVL 838

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT +R GKV  I
Sbjct: 839 FRNE----EQAMRAQMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRQKTSDRHGKVIFI 894

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPL 484
           +A +  T  R +      +  + +++IL  Y +  +   F+++      G     +  PL
Sbjct: 895 DAVNEVTRERAQS----FLKTEHQQRILSAYQTFADVPGFAKVATLAEIGANAGNLSIPL 950

Query: 485 RMSFI----LDKTGLARLEADITWRKLSPLHQSFWLDI 518
            +  +       +    +    +W +     ++FW  +
Sbjct: 951 YVKRVAAASASDSNGEAISLRTSWEQWQNDGRAFWQQM 988


>gi|114778593|ref|ZP_01453420.1| Type I restriction-modification system M subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114551182|gb|EAU53742.1| Type I restriction-modification system M subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 572

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 127/518 (24%), Positives = 211/518 (40%), Gaps = 47/518 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +F+W+ A+ L G+   ++F   I     L+RL  A E  +  V   YL+ G + 
Sbjct: 5   TLQQLESFLWETADILRGNMDASEFKDYIFGMLFLKRLSDAFEEEQEKVVAHYLSVGKTQ 64

Query: 67  IDLESFVKVAGY---SFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDF 118
              E   +       +F+       S L   +       N     I   +   + +    
Sbjct: 65  AQAEELAQDEDEYDNTFFVPERARWSYLKDLHHDIGAELNKATEAIEEANTTLEGVLVSI 124

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           DF+  I        L  +  ++S   L + D     ++   YE+LI+ F     +   +F
Sbjct: 125 DFN--IKNKLSDKKLRDLISHYSKYRLRNEDFEKPDLLGTAYEYLIKMFADSAGKKGGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +VV L  +LL           P     +YDPT G+GG L    N++A   SH + P
Sbjct: 183 YTPSEVVRLLVSLL----------KPEAGMRVYDPTVGSGGMLIQTRNYLA---SHGENP 229

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L  +GQE+   T A+C   M +  +      D+ K                 F   ++
Sbjct: 230 RDLALYGQEMNLNTWAICKMNMFLHGV---FNADIRKGDTLRDPAHIQHGELMHFDRVIA 286

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K        + E  N   GRF  G P    G + F+ H+   L    N  G+  
Sbjct: 287 NPPFSLKKWG-----KDEADNDAYGRFPYGTPPKDAGDLAFVQHMIASL----NAEGKMG 337

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+    LF G +   E  IR+ +L++DL+EA++ LP+ LF+ T I   L I++ +K +E
Sbjct: 338 VVMPHGVLFRGSS---EKAIRKGILQDDLLEAVIGLPSGLFYGTGIPACLLIINKQKADE 394

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476
           R+GKV  INA   +   +N    +  + D+   +I   + + E  K +S +         
Sbjct: 395 RKGKVLFINAELEYEEGKN----QNKLRDEDIAKITATFENYEEIKRYSHIATLSEIEEN 450

Query: 477 --RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
              + + R    S   +   + A L   I  R++   +
Sbjct: 451 DFNLNIRRYADTSPPPEIYDVRAILHGGIPVREVEDEY 488


>gi|120555301|ref|YP_959652.1| type I restriction-modification system, M subunit [Marinobacter
           aquaeolei VT8]
 gi|120325150|gb|ABM19465.1| type I restriction-modification system, M subunit [Marinobacter
           aquaeolei VT8]
          Length = 574

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 124/524 (23%), Positives = 207/524 (39%), Gaps = 55/524 (10%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +   L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + Y+  G 
Sbjct: 4   NITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYMDKGK 63

Query: 65  SNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFE 116
           +                +FY         +           N     I  ++   + +  
Sbjct: 64  TEDQARELADDEDEYDKTFYIPPVARWGVIKDLKHDIGSGLNTATEAIEEYNPVLEGVLV 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAE 175
             DF+  I        L  +  +FS   L  +      ++   YE+LI+ F     +   
Sbjct: 124 SIDFN--IKNKLSDKKLRDLLSHFSRYRLRNEDFERPDLLGTAYEYLIKMFADSAGKKGG 181

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G +  
Sbjct: 182 EFYTPSEVVQLLVALL----------KPHAGMRIYDPTAGSGGMLVQTRNYLAAHGEN-- 229

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
            P  L   GQE+   T A+C   M +  +        S +I++G TL +   T       
Sbjct: 230 -PSNLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGGELMT 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF  K        ++E      GRF  G P    G + F+ H+   L    N
Sbjct: 282 FDRVIANPPFSLKKWG-----KEEADGDSYGRFPYGTPPKDAGDLAFVQHMIASL----N 332

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    LF G +   E  IR+ +L +DL+EA+V LP  LF+ T I   L I++
Sbjct: 333 SEGMMGVVMPHGVLFRGSS---EKAIRQGILNDDLLEAVVGLPAALFYGTGIPACLLIIN 389

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDY 470
             K  ER+GKV  IN+   +   +N    +  +      +I+  +    E  ++S+++  
Sbjct: 390 KNKPAERKGKVLFINSELEYEEGKN----QNKLRQQDIEKIVQTFDDYAELKRYSKVVTL 445

Query: 471 RTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
                    + + R    S   +   + A L   I  R++   +
Sbjct: 446 AEIAENDYNLNIRRYADTSPPPEIFDVRAILHGGIPVREVESEY 489


>gi|86152066|ref|ZP_01070278.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840851|gb|EAQ58101.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 562

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 172/570 (30%), Positives = 294/570 (51%), Gaps = 40/570 (7%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV---KVA 76
           + L   +    +  VILP T++RR++  LEPT+  V + Y  +     +LES +   +  
Sbjct: 4   DLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGN 63

Query: 77  GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
              F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +  LE++ +L+
Sbjct: 64  KLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQLDTLEESNILF 123

Query: 135 KICKNFSGIELHP--------------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + F   +++                 + +  M  ++E LIR+F  E +E A +  TP
Sbjct: 124 GVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTP 183

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+++ L T L+  P     K+   +   +YD  CG+GG LT++   + D     +    +
Sbjct: 184 REIIELMTHLVFLPVKEQIKQGTWL---IYDNACGSGGMLTESKEFITDPEGLIQSKANI 240

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE+ PET+A+C A MLI+        +  + I+ GSTLS D     +F + LSNPP
Sbjct: 241 YLYGQEINPETYAICKADMLIKG-------ENPERIKFGSTLSNDQ-QNLQFDFMLSNPP 292

Query: 301 FGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +GK WE D+  +  E K         RF  G+   SDG M+FL+++ +K++     G R 
Sbjct: 293 YGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRI 352

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A V + S LFN  +G     IR+ ++END +EAIVALPT++F+ T I T++WI++N+K+E
Sbjct: 353 ASVHNGSSLFNSDSG--MVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKSE 410

Query: 417 ERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            ++GKVQLIN T+   ++ ++   G+K+  +  +   +I +++++  + K  ++LD   F
Sbjct: 411 HKKGKVQLINTTNEEYFSKMKKSLGQKQNEMTKEHIEKITELFLNFISSKDCKILDNEDF 470

Query: 474 GYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           GY +I + +P  + F+ D    A+L + D    KL  L Q+      +    +       
Sbjct: 471 GYTKIIIEKPKSVEFLKDDEKFAKLKDKDKILEKLQELEQNPQDFKNREEFIKFLGVKLK 530

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           +S     I S++    +    K+ I A + 
Sbjct: 531 KSEENLIIDSDKTNNTEKIPLKTNIKAIMT 560


>gi|163761335|ref|ZP_02168410.1| Type I restriction-modification system M subunit [Hoeflea
           phototrophica DFL-43]
 gi|162281492|gb|EDQ31788.1| Type I restriction-modification system M subunit [Hoeflea
           phototrophica DFL-43]
          Length = 496

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 119/526 (22%), Positives = 215/526 (40%), Gaps = 38/526 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T + + L + +W+ A+ L G     D+   I      +RL    +       E+Y 
Sbjct: 1   MT--TLTLSQLESHLWRAADILRGSIDSGDYKHYIFGLLFFKRLSDVWQEEYEERLERYG 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +    E    +    F+       + +G+    N     I   +   + +F+D DF
Sbjct: 59  DAEIAADPEEHRFDIPKGHFWTDVRKHTTDIGT--HLNAAFRAIEDANMKLRGVFQDVDF 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   R   A L  K+ ++F    L    V   V+   YE+LI +F  +  +   +F TP
Sbjct: 117 NNK-ERFPDAML-EKLLQHFETYRLRKSDVEPDVLGQAYEYLIAQFADDAGKKGGEFYTP 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L    L           P    ++YDPTCG+GG L +A++H+   G   K P  L
Sbjct: 175 KMVVRLIVECL----------KPEEGMSIYDPTCGSGGMLLEAVHHLERQG---KNPKSL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE    T A+C   + +  ++          ++      + +   + F   L+NPP
Sbjct: 222 SLFGQEKNLNTWAICQMNLFLHDIDDAKVARGDTLLEPKHLTGEGVKAIRTFDRVLANPP 281

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K        +   +    GR   G P  S G + F+ H+   L+      G   +VL
Sbjct: 282 FSLKSWGH----DVWSQGDAYGRDRYGCPPKSYGDLAFVQHMVASLK----EDGVCGVVL 333

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E  IR  L+ +DL+EA++ L  +LF+   I   + IL  +K E R+G
Sbjct: 334 PHGVLFRGGA---EGRIREGLIRDDLVEAVIGLAPNLFYGAGIPACILILRKQKPEARKG 390

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--R 477
           K+ ++N        + +GK + ++++     +   Y    +  + +R++  R        
Sbjct: 391 KILIVN----GAEQKVDGKNQNLLSETNVATLAKAYDDFADAERLARVVPLREIEASDFN 446

Query: 478 IKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPM 522
           + + R + +    D+  + A +E  I  +      ++  +  L+ +
Sbjct: 447 LNISRYVHLGEEADEVDVAAEVERLIELQAERDAAEARMMGFLREL 492


>gi|300118615|ref|ZP_07056353.1| type I restriction modification system, methyltransferase subunit
           [Bacillus cereus SJ1]
 gi|298724004|gb|EFI64708.1| type I restriction modification system, methyltransferase subunit
           [Bacillus cereus SJ1]
          Length = 493

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 222/500 (44%), Gaps = 50/500 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L + +W++A  + G    +D+   I     L+RL     E  +    E+   +G  
Sbjct: 5   TLQQLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVETAKRIEEEEQDDYGWY 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F    G  + +       T    +  N     +   + + + +  + DF+    
Sbjct: 65  DRDEHQFFVPEGVRWEDI---RSKTQDIGDAINKAFEKLEEENISLQGVLANIDFNDKEK 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             +   LL ++ ++FS I+L   ++ +  ++   YE+LI++F  +  +   +F TP +VV
Sbjct: 122 LPDS--LLLQLIQHFSKIDLSNASLSEPDMLGRAYEYLIKQFADDAGKKGGEFYTPSEVV 179

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+           P     + DPT G+GG L  +++++   G +   P  LV HG
Sbjct: 180 ELIVKLI----------KPEEGMRVCDPTAGSGGMLIQSVDYIKGKGGN---PRNLVLHG 226

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPP 300
           QE    T A+C   +L+  L           I++G T+ +     +     +   ++NPP
Sbjct: 227 QERNLNTWAICKMNLLLHGLSD-------HRIEKGDTIREPKLLEEGELILYDRVIANPP 279

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K    +     E ++ E GRF  GLP  + G   F+ H+   L    N  G+A +V+
Sbjct: 280 FSLKNWGRE-----EAESDEYGRFRFGLPPKTAGDYGFIQHMIATL----NHEGKAGVVM 330

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E  IR+ L+E DLIEA++ LP++LF+ T I   + IL+  K+EER+ 
Sbjct: 331 PHGVLFRGGA---EGAIRKGLIEEDLIEAVIGLPSNLFYGTGIPACILILNRNKSEERKN 387

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFGYR--R 477
           K+  ++ +  +   +N    +  + D    ++++ Y  + E  K+ R +     G     
Sbjct: 388 KIFFLDGSQDYQEGKN----QNTLRDKDIEKVVEAYDKNEEEEKYCRPVGIEEIGENDYN 443

Query: 478 IKVLRPLRMSFILDKTGLAR 497
           + + R +  +   +K  +A+
Sbjct: 444 LNIARYIDTTEEEEKIDVAQ 463


>gi|86145620|ref|ZP_01063950.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
 gi|85836591|gb|EAQ54717.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
          Length = 583

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/499 (24%), Positives = 206/499 (41%), Gaps = 58/499 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S   L +F+W+ A+ L G+   ++F   I     L+R+  A E  +  V   YL
Sbjct: 1   MTNK-LSLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRMSDAFEEEQEKVIAYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLG--STNTRNNLESYIASFSDN---AK 112
             G +    E           +FY       S L     N   +L     +  ++    +
Sbjct: 60  GKGKTQEQAEELANDEDEYDDTFYMPESSRWSALKDLKHNIGESLNKATEAIEEHNSALE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            +    DF+  I        L  +  +FS   L  +      ++   YE+LI+ F     
Sbjct: 120 GVLVTIDFN--IKNKLTDAKLRDLLSHFSQHRLRNEDFERPDMLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    NH+A  G
Sbjct: 178 KKGGEFYTPSEVVQLLVALL----------KPHAGMRIYDPTTGSGGMLVQTRNHLAKNG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      L   GQE+   T A+C   M +  ++S        +I++G TL +   T   
Sbjct: 228 ENA---SNLSLFGQEMNLNTWAICKMNMFLHGVQS-------ADIRKGDTLREPKHTEGG 277

Query: 292 ----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF  K        + E  +   GRF  G P    G + F+ H+     
Sbjct: 278 ELMSFDRVIANPPFSLKKWG-----KDECDSDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G +   E  IR+ +LE+DL+EA++ LP+ LF+ T I   L
Sbjct: 331 --TNNEGMVGVVMPHGVLFRGSS---EKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR------EN 461
            I++  K+  R+GKV  IN+   +   +N    +  + +    +I++ + +       + 
Sbjct: 386 LIINKNKSAARKGKVLFINSELEFEEGKN----QNKLREQDITKIVETFENHSFESKCDI 441

Query: 462 GKFSRMLDYRTFGYRRIKV 480
            ++++++++         +
Sbjct: 442 KRYAKVVNFSEIAENDFNL 460


>gi|293374801|ref|ZP_06621105.1| type I restriction-modification system, M subunit [Turicibacter
           sanguinis PC909]
 gi|292646559|gb|EFF64565.1| type I restriction-modification system, M subunit [Turicibacter
           sanguinis PC909]
          Length = 495

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/529 (22%), Positives = 220/529 (41%), Gaps = 48/529 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W++A  L G    +D+   I     L+R+    E     + +         
Sbjct: 5   TLQELESHLWESANILRGSIDSSDYKNYIFGLLFLKRVNDVFEEICHHLVD------DEG 58

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN---AKAIFEDFDF 120
            DLE   +    Y F+   E   S L S  T+    L        +     + +F+  DF
Sbjct: 59  WDLEDAEEERDEYQFFVPKEARWSYLQSLTTDIGPALNHAFERLEEENGSLEGVFKQIDF 118

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +      +   LL ++ ++FS I L  +++ +  ++   YE+LI++F  +  +   +F T
Sbjct: 119 NDKEKLPD--TLLIQLIQHFSKINLSNESLEEPDMLGRAYEYLIKQFADDAGKKGGEFYT 176

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  VV L   L+           P     + DPT G+GG L  +++++   G +   P  
Sbjct: 177 PTKVVELLVKLI----------KPEEGMRICDPTSGSGGMLIQSVDYIKSKGGN---PNN 223

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +GQE    T A+C   +L+  L       + K          +      F   ++NP
Sbjct: 224 LSLYGQEKNLNTWAICKMNLLLHGLSD---HRIEKGDTIRDPKLTENGELMLFDRVIANP 280

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+  K    +     E    E GRF  GLP  + G   F+ H+   L    N  G+A +V
Sbjct: 281 PYSLKNWGRE-----EASADEFGRFRFGLPPANAGDYAFVQHMLATL----NHTGKAGVV 331

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E +IR+ L++ DLIEAI+ LP +LF+ T I   + + +  K E R+
Sbjct: 332 LPHGILFRGGA---EGKIRQGLVKEDLIEAIIGLPANLFYGTGIPATIILYNKDKEEARQ 388

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRI 478
            K+  I+A+  +   +N    + ++ D+   +I+  + + E   K+SR++          
Sbjct: 389 NKIFFIDASRDFQEGKN----QNVLRDEDVEKIVSTFDNYEEIEKYSRIVTLDEIKENDY 444

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +     +    ++  +  ++A    ++L    +     +   + +  Y
Sbjct: 445 NLNISRYIDTTEEEEQIDVVQAIKELQQLEQEREKIEATMYSFLKELGY 493


>gi|30250441|ref|NP_842511.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30139282|emb|CAD86434.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 448

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 192/469 (40%), Gaps = 48/469 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + + L + +W++A  L G     DF   I P    +R+    +     + ++  
Sbjct: 1   MSDQHITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFE 116
                +  L  F +   +       ++     ++N    L+  +        D    +F 
Sbjct: 59  ---TGDEQLAWFPESHRFQIPEDCHWNDVRTKASNVGTALQRAMREIEKANPDTLYGVFG 115

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A +
Sbjct: 116 DAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVSSDLLGDAYEYLIKKFADATNKKAGE 173

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     K 
Sbjct: 174 FYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEQHGDVKR 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
                 +GQE    T ++    + +  +E          + +G TL    F        F
Sbjct: 224 LWG-KLYGQEKNLTTSSIARMNLFLHGIED-------FQVVRGDTLRNPAFFEVDRLATF 275

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  +        E    N   GR   GLP  S G   ++ H+   +      
Sbjct: 276 DCVIANPPFSLEKWG-----EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADVI-- 328

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + + + 
Sbjct: 329 -GRMAVVLPQGALFR---KGVEGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIMVCAK 384

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           RK  + + KV + +A+ L+   R     +  +  +   +IL  Y    +
Sbjct: 385 RKPAKHKNKVLIADASRLFRRGRA----QNHLEPEHATEILSWYRGFAD 429


>gi|229829855|ref|ZP_04455924.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM
           14600]
 gi|229791153|gb|EEP27267.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM
           14600]
          Length = 595

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 190/602 (31%), Positives = 285/602 (47%), Gaps = 50/602 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +    AN IW  A  L+G +K  ++G VILP  +++R    L PT   V   Y       
Sbjct: 13  NIKEKANLIWNVANSLFGAYKPHEYGLVILPMAVIKRFHDCLLPTHDKVLATYEKIKHLA 72

Query: 67  IDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           +  E F++ A  GY FYN S ++   L +   N + N ESYI  FSDN   I  +  F +
Sbjct: 73  VK-EGFLRTATGGYRFYNVSPFTFERLKADPENIKANFESYINGFSDNVIDILANMGFFN 131

Query: 123 TIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            I R+  AG+LY++  +F     ++ PD +    M  ++E+L++RF     E A    T 
Sbjct: 132 QIDRMNDAGVLYQVISDFCEDSADMSPDKISAVDMGYVFENLVQRFSESYDEEAGAHFTS 191

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD+++L   +L    D    +SP   +T+YD   GT   LT     +    +  +    +
Sbjct: 192 RDIIYLMCDMLTMEADFSSSDSPA--KTVYDMAMGTSQMLTCMEERIKSLDAEAQ----I 245

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           + +GQE+ P T  +  A +LIR  + D       N++ G TL+ D F G  F YC+SNPP
Sbjct: 246 ICYGQEINPFTFGIAKADVLIRGGDPD-------NMRFGDTLNDDKFKGYTFDYCISNPP 298

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG  W+++   VEKEHK G+ GRFG GLP  SDG MLF+++   KL+      GR AI+ 
Sbjct: 299 FGIDWKREAADVEKEHKKGDAGRFGVGLPAKSDGQMLFMLNGIAKLK----DTGRMAIIQ 354

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + S LF G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI++  K    R 
Sbjct: 355 NGSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYVWIITKDKPVTHRE 414

Query: 421 KVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF-------------SR 466
           +V LI+A+  +   R+    +R+ I +  R  I+  Y   ++  +             S+
Sbjct: 415 QVLLIDASGCYEQRRSPIGNKRVDITEVCRDLIVKAYSDYDSKTYEKKIDSNTAIVVKSK 474

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            LD  + GY +I V  P      LD  G   L      +K++   +     +  P+ + +
Sbjct: 475 RLDSISLGYNKITVESP-----QLDDDGEPIL---KKGKKVADTSKRDTETV--PLDEDM 524

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             Y   E          +    KV     F   F          AD +     E      
Sbjct: 525 DVYFEREVLPYRPGAWIDKSKTKVGYEIPFTKTFYEYLEM--ESADEIAKRIEEHEHSLM 582

Query: 587 LT 588
             
Sbjct: 583 QK 584



 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D   +P+    G+ + DT+  + E VP  E +  YF REV P+ P A+I        DK 
Sbjct: 494 DDDGEPILK-KGKKVADTSKRDTETVPLDEDMDVYFEREVLPYRPGAWI--------DKS 544

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             +VGYEI F + FY+Y       +I   ++  E  +   L  +  
Sbjct: 545 KTKVGYEIPFTKTFYEYLEMESADEIAKRIEEHEHSLMQKLRALFG 590


>gi|295696354|ref|YP_003589592.1| type I restriction-modification system, M subunit [Bacillus tusciae
           DSM 2912]
 gi|295411956|gb|ADG06448.1| type I restriction-modification system, M subunit [Bacillus tusciae
           DSM 2912]
          Length = 493

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/496 (23%), Positives = 206/496 (41%), Gaps = 42/496 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L + +W++A  L G    +D+   I     L+RL     E  +   RE    +G  
Sbjct: 5   TLQQLESHLWESANILRGHIDSSDYKHYIFGMLFLKRLNDVFIEKAKEIEREYGQDYGWY 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F       +   S     T       N+    +   +   + +    DF+    
Sbjct: 65  DRDEHQFFVPEEARW---SYLYSKTQDIGTAINHAFELLEDENPQLQGVLRSIDFNDK-E 120

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           RL  A +  ++ ++FS I+L    + +  ++   YE+LI+ F  +  +   +F TP  VV
Sbjct: 121 RLPDATIS-RLMQHFSEIDLSNANLSEPDILGRAYEYLIKMFADDAGKKGGEFYTPSKVV 179

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+           P     + DPT G+GG L  +++++   G +   P  +  HG
Sbjct: 180 ELIVKLI----------KPQEGMRICDPTAGSGGMLIQSVDYIKAAGGN---PQNVTLHG 226

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T A+C   +L+  L       + K                 +   ++NPPF  K
Sbjct: 227 QEKNLNTWAICKMNLLLHGLSD---HRIEKGDTLRDPKLVQDGELILYDRVIANPPFSLK 283

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                    +E +    GRF  GLP    G + F+ H+   L    N  G+A +V+    
Sbjct: 284 GWG-----REEAEADPYGRFRFGLPPKDKGDLAFVQHMIATL----NHEGKAGVVMPHGV 334

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E +IR+ +L  DL+EA++ LP +LF+ T I   + + S  K   +RGKV  
Sbjct: 335 LFRGGA---EEQIRKGILGEDLLEAVIGLPANLFYGTGIPACILMFSRSKEPHKRGKVFF 391

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF--GYRRIKVL 481
           +N  + +   +N    +  + D+  R+I+  Y + ++  K+ R++D          + + 
Sbjct: 392 LNGANDYQEGKN----QNFLRDEDIRKIVSAYDTWQDVDKYCRVVDLDEIRKNEYNLNIA 447

Query: 482 RPLRMSFILDKTGLAR 497
           R +  +   ++  +A 
Sbjct: 448 RYIDSTDEEEQIDVAE 463


>gi|189423917|ref|YP_001951094.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420176|gb|ACD94574.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 496

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 127/505 (25%), Positives = 203/505 (40%), Gaps = 51/505 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L N +W++A  L G     DF   I P    +R+    +     + E+       + 
Sbjct: 6   LSQLENHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIAEE-----MGDP 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSST 123
           +L  F +   +       +        N  N L+  +        D   A+F D  +++ 
Sbjct: 61  ELAMFPESHRFQVPEGCHWRDIRETPVNVGNALQRALREIEKANPDTLYAVFGDAQWTNK 120

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL  A LL  + ++FS + L    V   V+ + YE+LI++F    ++ A +F TPR V
Sbjct: 121 -DRLTDA-LLKDLIEHFSRLPLGNRNVASDVLGDAYEYLIKKFADATNKKAGEFYTPRSV 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   +L           P    ++YDP CGTGG L  A+ HV +     K+       
Sbjct: 179 VRLMVDML----------DPKEGDSIYDPACGTGGMLLAALQHVHELHGDTKLLWG-KLF 227

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCLSNP 299
           GQE    T A+    + +  +E          I +G TL    F        F   ++NP
Sbjct: 228 GQEKNLTTSAIARMNLFLHGIED-------FQIVRGDTLRNPAFFEGDRLATFDCVIANP 280

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  +        E+   N   GR   GLP  S G   ++ H+   +       GR A+V
Sbjct: 281 PFSLEKWG-----EEVWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---AEVTGRMAVV 332

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF       E EIRR LLE DLIE ++ L  +LF+ T +A  + +L  RK  ER+
Sbjct: 333 LPQGALFR---KGVEGEIRRKLLEMDLIEGVIGLAPNLFYGTGLAACILLLRKRKPAERK 389

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYRRI 478
            KV + +A+ L+   R     +  +  +   +IL  Y +  +     R++          
Sbjct: 390 RKVMIADASSLFRRGRA----QNYLEPEHGAEILGWYQAFIDVQDRVRIVSTDEIKAEDW 445

Query: 479 K--VLRPLRMSFILDKTGLARLEAD 501
              + R +      D   L +  A+
Sbjct: 446 TLNISRYVLPPLNDDIPPLPQAIAE 470


>gi|225629306|ref|ZP_03787339.1| type I restriction-modification system, M subunit [Brucella ceti
           str. Cudo]
 gi|225615802|gb|EEH12851.1| type I restriction-modification system, M subunit [Brucella ceti
           str. Cudo]
          Length = 523

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 16  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 74  PENVAYSDPDEHEFFLVKRARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 130

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 131 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 190

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 191 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 240

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 241 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 298

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 299 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 353

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 354 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 410

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 411 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 466

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 467 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 520


>gi|237816883|ref|ZP_04595875.1| type I restriction-modification system, M subunit [Brucella abortus
           str. 2308 A]
 gi|237787696|gb|EEP61912.1| type I restriction-modification system, M subunit [Brucella abortus
           str. 2308 A]
          Length = 523

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 16  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 74  PENVAYSDPDEHEFFLVERARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 130

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 131 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 190

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 191 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 240

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 241 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 298

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 299 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 353

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 354 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 410

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 411 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 466

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 467 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 520


>gi|148558226|ref|YP_001257779.1| type I restriction-modification system, M subunit [Brucella ovis
           ATCC 25840]
 gi|148369511|gb|ABQ62383.1| type I restriction-modification system, M subunit [Brucella ovis
           ATCC 25840]
          Length = 523

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 226/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 16  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 74  PENVAYSDPDEHEFFLVERARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 130

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 131 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 190

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP+ VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 191 GEFYTPQHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 240

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 241 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 298

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 299 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 353

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 354 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 410

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 411 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 466

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 467 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 520


>gi|229164778|ref|ZP_04292610.1| Type I restriction-modification system, M subunit [Bacillus cereus
           R309803]
 gi|228618681|gb|EEK75675.1| Type I restriction-modification system, M subunit [Bacillus cereus
           R309803]
          Length = 493

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 115/528 (21%), Positives = 223/528 (42%), Gaps = 48/528 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L + +W++A  + G    +D+   I     L+RL     E  +    E+   +G  
Sbjct: 5   TLQQLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVETAKRIEVEEQDDYGWY 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   F    G  + +    +     + N        +   + + + +  + DF+    
Sbjct: 65  DRDEHQFFVPEGARWEDIHSKTQDIGDAINK---AFEKLEEENVSLQGVLANIDFNDKEK 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             +   LL ++ ++FS I+L    + +  ++   YE+LI++F  +  +   +F TP  VV
Sbjct: 122 LPDN--LLLQLIQHFSKIDLSNANLSEPDMLGRAYEYLIKQFADDSGKKGGEFYTPSKVV 179

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+           P     + DPT G+GG L  +++++ + G +   P  LV HG
Sbjct: 180 ELIVKLI----------KPEEGMRVCDPTAGSGGMLIQSVDYIKEKGGN---PRNLVLHG 226

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPP 300
           QE    T A+C   +L+  L           I++G T+ +     +     +   ++NPP
Sbjct: 227 QERNLNTWAICKMNLLLHGLSD-------HRIEKGDTIREPKLLEEGELVLYDRVIANPP 279

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K    +     E ++ + GRF  GLP  + G   F+ H+   L    N  G+A +V+
Sbjct: 280 FSLKNWGRE-----EAESDQYGRFRFGLPPKTAGDYGFIQHMIATL----NHEGKAGVVM 330

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E  IR+ ++E DLIEA++ LP++LF+ T I   + +L+  K+EER+ 
Sbjct: 331 PHGVLFRGAA---EGTIRKRIIEEDLIEAVIGLPSNLFYGTGIPACILLLNRNKSEERKN 387

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK 479
           K+  ++ +  +   +N    +  + D   +++ + Y   E   K+ R +           
Sbjct: 388 KIFFLDGSQDYQEGKN----QNTLRDQDIKKVTEAYDKYEEIEKYCRPVSIEEVRENDYN 443

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +     +    ++  +    A    +KL    +     +   + +  Y
Sbjct: 444 LNIARYIDITEEEEQIDVAAALAELQKLENARKEIESVMYGYLKELGY 491


>gi|260167612|ref|ZP_05754423.1| type I restriction-modification system methylation subunit
           [Brucella sp. F5/99]
 gi|261757035|ref|ZP_06000744.1| type I restriction-modification system protein [Brucella sp. F5/99]
 gi|261737019|gb|EEY25015.1| type I restriction-modification system protein [Brucella sp. F5/99]
          Length = 508

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 59  PENVAYSDPDEHEFFLVKRARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 115

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 116 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 176 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 226 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 284 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 339 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 395

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 396 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 451

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 452 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 505


>gi|254712613|ref|ZP_05174424.1| type I restriction-modification system methylation subunit
           [Brucella ceti M644/93/1]
 gi|254715684|ref|ZP_05177495.1| type I restriction-modification system methylation subunit
           [Brucella ceti M13/05/1]
 gi|261217433|ref|ZP_05931714.1| type I restriction modification system protein [Brucella ceti
           M13/05/1]
 gi|261320307|ref|ZP_05959504.1| type I restriction modification system protein [Brucella ceti
           M644/93/1]
 gi|260922522|gb|EEX89090.1| type I restriction modification system protein [Brucella ceti
           M13/05/1]
 gi|261292997|gb|EEX96493.1| type I restriction modification system protein [Brucella ceti
           M644/93/1]
          Length = 508

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 128/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 59  PENVAYSDPDEHEFFLVERARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 115

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 116 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 176 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 226 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 284 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   IV+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 339 GVCGIVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 395

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 396 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 451

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 452 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 505


>gi|163844960|ref|YP_001622615.1| type I restriction-modification system, M subunit [Brucella suis
           ATCC 23445]
 gi|163675683|gb|ABY39793.1| type I restriction-modification system, M subunit [Brucella suis
           ATCC 23445]
          Length = 508

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 59  PENVAYSDPDEHEFFLVERARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 115

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 116 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 176 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 226 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 284 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NAK 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 339 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 395

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 396 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 451

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 452 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 505


>gi|17988796|ref|NP_541429.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|297249369|ref|ZP_06933070.1| type I restriction-modification system, M subunit [Brucella abortus
           bv. 5 str. B3196]
 gi|17984614|gb|AAL53693.1| type i restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|297173238|gb|EFH32602.1| type I restriction-modification system, M subunit [Brucella abortus
           bv. 5 str. B3196]
          Length = 518

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 11  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 68

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 69  PENVAYSDPDEHEFFLVERARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 125

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 126 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 185

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 186 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 235

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 236 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 293

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 294 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 348

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 349 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 405

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 406 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 461

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 462 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 515


>gi|23500570|ref|NP_700010.1| type I restriction-modification system, M subunit [Brucella suis
           1330]
 gi|62317328|ref|YP_223181.1| HsdM restriction-modification system, M subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269309|ref|YP_418600.1| N-6 adenine-specific DNA methylase [Brucella melitensis biovar
           Abortus 2308]
 gi|161620897|ref|YP_001594783.1| type I restriction-modification system, M subunit [Brucella canis
           ATCC 23365]
 gi|189022583|ref|YP_001932324.1| type I restriction-modification system, M subunit [Brucella abortus
           S19]
 gi|225686602|ref|YP_002734574.1| type I restriction-modification system, M subunit [Brucella
           melitensis ATCC 23457]
 gi|254690828|ref|ZP_05154082.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 6 str. 870]
 gi|254695864|ref|ZP_05157692.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 3 str. Tulya]
 gi|254698609|ref|ZP_05160437.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700051|ref|ZP_05161879.1| type I restriction-modification system methylation subunit
           [Brucella suis bv. 5 str. 513]
 gi|254703171|ref|ZP_05164999.1| type I restriction-modification system methylation subunit
           [Brucella suis bv. 3 str. 686]
 gi|254705683|ref|ZP_05167511.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis M163/99/10]
 gi|254710914|ref|ZP_05172725.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis B2/94]
 gi|254732056|ref|ZP_05190634.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 4 str. 292]
 gi|256015604|ref|YP_003105613.1| type I restriction-modification system, M subunit [Brucella microti
           CCM 4915]
 gi|256029298|ref|ZP_05442912.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis M292/94/1]
 gi|256043713|ref|ZP_05446636.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058986|ref|ZP_05449197.1| type I restriction-modification system methylation subunit
           [Brucella neotomae 5K33]
 gi|256111244|ref|ZP_05452275.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 3 str. Ether]
 gi|256157493|ref|ZP_05455411.1| type I restriction-modification system methylation subunit
           [Brucella ceti M490/95/1]
 gi|256253530|ref|ZP_05459066.1| type I restriction-modification system methylation subunit
           [Brucella ceti B1/94]
 gi|256256010|ref|ZP_05461546.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 9 str. C68]
 gi|256262259|ref|ZP_05464791.1| type I restriction-modification system protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260544565|ref|ZP_05820386.1| type I restriction-modification system protein [Brucella abortus
           NCTC 8038]
 gi|260564900|ref|ZP_05835385.1| type I restriction-modification system protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260567901|ref|ZP_05838370.1| type I restriction-modification system protein [Brucella suis bv. 4
           str. 40]
 gi|260756406|ref|ZP_05868754.1| type I restriction modification system protein [Brucella abortus
           bv. 6 str. 870]
 gi|260759838|ref|ZP_05872186.1| type I restriction modification system protein [Brucella abortus
           bv. 4 str. 292]
 gi|260763077|ref|ZP_05875409.1| type I restriction modification system protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260882230|ref|ZP_05893844.1| type I restriction modification system protein [Brucella abortus
           bv. 9 str. C68]
 gi|261216284|ref|ZP_05930565.1| type I restriction modification system protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|261220660|ref|ZP_05934941.1| type I restriction modification system protein [Brucella ceti
           B1/94]
 gi|261313103|ref|ZP_05952300.1| type I restriction modification system protein [Brucella
           pinnipedialis M163/99/10]
 gi|261318497|ref|ZP_05957694.1| type I restriction modification system protein [Brucella
           pinnipedialis B2/94]
 gi|261322930|ref|ZP_05962127.1| type I restriction modification system protein [Brucella neotomae
           5K33]
 gi|261750534|ref|ZP_05994243.1| type I restriction modification system protein [Brucella suis bv. 5
           str. 513]
 gi|261753793|ref|ZP_05997502.1| type I restriction modification system protein [Brucella suis bv. 3
           str. 686]
 gi|265986295|ref|ZP_06098852.1| type I restriction modification system protein [Brucella
           pinnipedialis M292/94/1]
 gi|265990135|ref|ZP_06102692.1| type I restriction modification system protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265992757|ref|ZP_06105314.1| type I restriction modification system protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265995990|ref|ZP_06108547.1| type I restriction modification system protein [Brucella ceti
           M490/95/1]
 gi|294853394|ref|ZP_06794066.1| type I restriction-modification system protein [Brucella sp. NVSL
           07-0026]
 gi|23464207|gb|AAN34015.1| type I restriction-modification system, M subunit [Brucella suis
           1330]
 gi|62197521|gb|AAX75820.1| HsdM, type I restriction-modification system, M subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82939583|emb|CAJ12563.1| N-6 Adenine-specific DNA methylase:N6 adenine-specific DNA
           methyltransferase, N12 class:N-6 DNA methylase:Type I
           restriction- [Brucella melitensis biovar Abortus 2308]
 gi|161337708|gb|ABX64012.1| type I restriction-modification system, M subunit [Brucella canis
           ATCC 23365]
 gi|189021157|gb|ACD73878.1| type I restriction-modification system, M subunit [Brucella abortus
           S19]
 gi|225642707|gb|ACO02620.1| type I restriction-modification system, M subunit [Brucella
           melitensis ATCC 23457]
 gi|255998264|gb|ACU49951.1| type I restriction-modification system, M subunit [Brucella microti
           CCM 4915]
 gi|260097836|gb|EEW81710.1| type I restriction-modification system protein [Brucella abortus
           NCTC 8038]
 gi|260152543|gb|EEW87636.1| type I restriction-modification system protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154566|gb|EEW89647.1| type I restriction-modification system protein [Brucella suis bv. 4
           str. 40]
 gi|260670156|gb|EEX57096.1| type I restriction modification system protein [Brucella abortus
           bv. 4 str. 292]
 gi|260673498|gb|EEX60319.1| type I restriction modification system protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260676514|gb|EEX63335.1| type I restriction modification system protein [Brucella abortus
           bv. 6 str. 870]
 gi|260871758|gb|EEX78827.1| type I restriction modification system protein [Brucella abortus
           bv. 9 str. C68]
 gi|260917891|gb|EEX84752.1| type I restriction modification system protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260919244|gb|EEX85897.1| type I restriction modification system protein [Brucella ceti
           B1/94]
 gi|261297720|gb|EEY01217.1| type I restriction modification system protein [Brucella
           pinnipedialis B2/94]
 gi|261298910|gb|EEY02407.1| type I restriction modification system protein [Brucella neotomae
           5K33]
 gi|261302129|gb|EEY05626.1| type I restriction modification system protein [Brucella
           pinnipedialis M163/99/10]
 gi|261740287|gb|EEY28213.1| type I restriction modification system protein [Brucella suis bv. 5
           str. 513]
 gi|261743546|gb|EEY31472.1| type I restriction modification system protein [Brucella suis bv. 3
           str. 686]
 gi|262550287|gb|EEZ06448.1| type I restriction modification system protein [Brucella ceti
           M490/95/1]
 gi|262763627|gb|EEZ09659.1| type I restriction modification system protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263000804|gb|EEZ13494.1| type I restriction modification system protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263091975|gb|EEZ16281.1| type I restriction-modification system protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264658492|gb|EEZ28753.1| type I restriction modification system protein [Brucella
           pinnipedialis M292/94/1]
 gi|294819049|gb|EFG36049.1| type I restriction-modification system protein [Brucella sp. NVSL
           07-0026]
 gi|326410992|gb|ADZ68056.1| type I restriction-modification system, M subunit [Brucella
           melitensis M28]
 gi|326554283|gb|ADZ88922.1| type I restriction-modification system, M subunit [Brucella
           melitensis M5-90]
          Length = 508

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 225/535 (42%), Gaps = 38/535 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E        + L
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S+ D   F  V    + +  + +    G  +  N   + I   + + + +  + 
Sbjct: 59  PENVAYSDPDEHEFFLVERARWSSIKKLTT---GIGDHLNKACAAIEDANPSIEGVLANI 115

Query: 119 DFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           DF+S         + G+L ++  +FS I+L   ++ +  ++   YE+LI +F  +  +  
Sbjct: 116 DFNSESRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADDAGKKG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSH 233
            +F TP  VV L   LL          +P     + DPTCG+GG L     HVA   G  
Sbjct: 176 GEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAKLEGKR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  HGQE    T A+    +L+  L  D R +    I+    L +D      + 
Sbjct: 226 LGEALNITLHGQEKNLGTWAIAKMNLLLHGLR-DARIEKGDTIRNPRLLDQDG-NLFLYD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +D      K G   RF  G+P  + G + F+ H+   L    N  
Sbjct: 284 RVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMVATL----NTK 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF    GSG+  IR  +L+ DL EAI+ LP +LF  T I   + IL+  
Sbjct: 339 GVCGVVMPHGVLFR---GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 395

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ER+G+V  I+    +     E  K+ I+ +    +I++ + + ++  +F R++D + 
Sbjct: 396 KATERKGRVLFIHGAKEFE----ERPKKNILGEGNITRIVNAFNAWKDEDRFCRIVDMKE 451

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  +    R    L+      ++A++     +   +      +  +++++ 
Sbjct: 452 IEENDFNLNIS-RYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNALLKEMG 505


>gi|295101280|emb|CBK98825.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 500

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 113/527 (21%), Positives = 201/527 (38%), Gaps = 61/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   S       IW  A  L G+   +++  V+L    L+ +    E     + E+  
Sbjct: 1   MAENNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
              G   + +     A   F+       S + +      + + I    D+A    E  + 
Sbjct: 59  ---GDGFEEDQDEYTAENIFFVPENARWSAIAAAAHTPEIGTVI----DDAMRSIEKENK 111

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L ++   F+ I++        ++   YE+ + +F  +  + 
Sbjct: 112 RLKDILPKNFARPELDKRRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     +L   +             +YDP CG+GG    +   + + G +
Sbjct: 172 AGEFYTPSCVVRTLVEVLQPFNG-----------RVYDPCCGSGGMFVQSAKFIENHGGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D             T   D     +  
Sbjct: 221 I---NKISVFGQDSNPTTWKMAQMNLAIRGIEAD------LGKFNADTFFNDCHPQLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF          V+         R+  G P   + +  +L H+   L       
Sbjct: 272 FIMANPPFNLSGWGADKLVDDV-------RWQYGTPPAGNANFAWLQHMIWHL----APN 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L +     GE EIR+ ++  DL++ IVA+PT LF+ T I   LW L+  
Sbjct: 321 GRIGMVLANGSLSSQS--GGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLAKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K  +++GK   I+A  L T +    +K R + D+  ++I D Y +  +G       F  +
Sbjct: 379 K--KQKGKTLFIDARKLGTMV---TRKLRELTDEDIKKIADTYNAFVDGTLEDEKGFCAV 433

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +  +    +   +L P R   I ++        +   R  S L + F
Sbjct: 434 VTTQDIAKQDY-ILTPGRYVGIEEQEDDGEPFEEKMGRLTSELSELF 479


>gi|86145619|ref|ZP_01063949.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
 gi|85836590|gb|EAQ54716.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
          Length = 812

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 142/557 (25%), Positives = 229/557 (41%), Gaps = 62/557 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T S   L +F+W++ + L G     D+ + IL    L+RL    E  +  V + Y+  G
Sbjct: 3   QTLSLQQLESFLWESTDILRGSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNG 62

Query: 64  GSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKA 113
            +    +   +       +F+     + S L  TN +  +          I   +   K 
Sbjct: 63  RTKEQAKELARNRSEYVNTFFVPENANWSAL--TNVKEEIGQSLDRSMLAIEEHNSELKN 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSE 172
           +    DF     RL  A L   +  +FS   L  +      ++   YE+LI+ F      
Sbjct: 121 VLTSIDFG-KKTRLSNAQLR-DLVLHFSKCRLLDEDFECPDILGKAYEYLIKMFADSAGR 178

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR+VV L  +LL           P    ++YDPT G GG L  + N++ D G 
Sbjct: 179 KGSGFYTPREVVKLMVSLL----------EPSSGMSVYDPTVGAGGMLVQSRNYLKDIGK 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
                  L  +GQE+   T  +C   M ++        + + +I+ G TL     T    
Sbjct: 229 D----VNLSLYGQEVNQGTWTICRMNMFLQG-------ESNVDIRHGDTLRNPKHTEANR 277

Query: 291 --RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   +S+PPF  K          E  N   GRF  G+P  + G   F+ H    +  
Sbjct: 278 LITFDRVISHPPFSLKEWGG-----DELSNDTFGRFKYGIPPRNSGDFAFIQHTLATM-- 330

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N  GRA +VL   PL    AG  E +IRR +LE+D+IEA++ LP  +F+ T I T L 
Sbjct: 331 --NESGRAVVVLPHGPLHR--AGKSELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCLL 386

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRM 467
           IL+  K  ++RGKV  ++A++ +       K    +  +   +IL  Y   E  G FSR+
Sbjct: 387 ILNKCKGRKQRGKVLFVDASNGF----KSNKWMMELRGEDSEKILKAYGDFESIGSFSRI 442

Query: 468 LDYRTF---GYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPMM 523
           +         Y R+ +   L +    D   L  L E+   ++ +   ++     I     
Sbjct: 443 VTVDEILKDKYCRLTIR--LYIDDSEDGKRLESLIESHSNFKHVRFNNRDVVKGITSVGA 500

Query: 524 QQIYPYGWAESFVKESI 540
            +++PY   + +   S+
Sbjct: 501 GKLHPYRENKVYFPRSL 517


>gi|210611279|ref|ZP_03288834.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787]
 gi|210152043|gb|EEA83050.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787]
          Length = 500

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 199/523 (38%), Gaps = 53/523 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   S       IW  A  L G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MAETNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAIFED 117
              G   + +     A   F+       S + +      + + I       +      +D
Sbjct: 59  ---GDGFEEDKDEYTAENIFFVPENARWSVISAAAHTPEIGTVIDEAMRSIEKENKRLKD 115

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +          L ++   F+ I++        ++   YE+ + +F  +  + A +F
Sbjct: 116 ILPKNFARPELDKRRLGEVVDLFTNIQMIDHGNSKDILGRTYEYCLAKFAEQEGKLAGEF 175

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L   +             +YDP CG+GG    +   + + G + K  
Sbjct: 176 YTPSCVVRTLVEVLQPYNG-----------RVYDPCCGSGGMFVQSSKFIENHGGNIKN- 223

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQ+  P T  +    + IR +E+D             T   D     +  + ++
Sbjct: 224 --ISVYGQDSNPTTWKLAQMNLAIRGIEAD------LGKFSADTFFNDCHPQLKADFIMA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF          ++         R+  G P  ++ +  +L H+   L       GR  
Sbjct: 276 NPPFNLSGWGQDKLLDDV-------RWQYGTPPANNANFAWLQHMIWHL----APNGRIG 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L +     GE EIR+ ++  DL++ IVA+P+ LF+ T I   LW L+  K  +
Sbjct: 325 MVLANGSLSSQS--GGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLAKNK--K 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----ENGK-FSRMLDYR 471
           ++GK   I+A  L T +    +K R + D   ++I D Y +      E+ K F  ++  +
Sbjct: 381 QKGKTLFIDARKLGTMV---TRKLRELTDVDIQRIADTYNAFVDGTLEDEKGFCAVVTTQ 437

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +   +L P R   I ++        +   R  + L + F
Sbjct: 438 DIARQDY-ILTPGRYVGIEEQEDDGEPFEEKMSRLTTELSELF 479


>gi|257440121|ref|ZP_05615876.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
 gi|257197473|gb|EEU95757.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
          Length = 500

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 113/527 (21%), Positives = 201/527 (38%), Gaps = 61/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   S       IW  A  L G+   +++  V+L    L+ +    E     + E+  
Sbjct: 1   MAENNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
              G   + +     A   F+       S + +      + + I    D+A    E  + 
Sbjct: 59  ---GDGFEEDQDEYTAENIFFVPENARWSAIAAAAHTPEIGTVI----DDAMRSIEKENK 111

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L ++   F+ I++        ++   YE+ + +F  +  + 
Sbjct: 112 RLKDILPKNFARPELDKRRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     +L   +             +YDP CG+GG    +   + + G +
Sbjct: 172 AGEFYTPSCVVRTLVEVLQPFNG-----------RVYDPCCGSGGMFVQSAKFIENHGGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D             T   D     +  
Sbjct: 221 I---NKISVFGQDSNPTTWKMAQMNLAIRGIEAD------LGKFNADTFFNDCHPQLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF          V+         R+  G P   + +  +L H+   L       
Sbjct: 272 FIMANPPFNLSGWGADKLVDDV-------RWQYGTPPAGNANFAWLQHMIWHL----APN 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L +     GE EIR+ ++  DL++ IVA+PT LF+ T I   LW L+  
Sbjct: 321 GRIGMVLANGSLSSQS--GGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLAKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K  +++GK   I+A  L T +    +K R + D+  ++I D Y +  +G       F  +
Sbjct: 379 K--KQKGKTLFIDARKLGTMV---TRKLRELTDEDIKKIADTYNAFVDGTLEDEKGFCAV 433

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +  +    +   +L P R   I ++        +   R  S L + F
Sbjct: 434 VTTQDIANQDY-ILTPGRYVGIEEQEDDVEPFEEKMGRLTSELSELF 479


>gi|114319660|ref|YP_741343.1| type I restriction-modification system, M subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226054|gb|ABI55853.1| type I restriction-modification system, M subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 808

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 124/573 (21%), Positives = 218/573 (38%), Gaps = 66/573 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++K A+ L G    ++F + I     L+R     +  R  VR    A G S 
Sbjct: 4   TLNQLERHLFKAADILRGRMDASEFKEYIFGMLFLKRCSDVFDQRREEVRGSLQASGKSE 63

Query: 67  IDLESFVKVAGY---SFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN---AKAIFED 117
            ++   +++  +    F+   +     L +   +     L   +A   ++      + E 
Sbjct: 64  AEIAQLIEMPHWYKADFFVPPQSRWDHLLNEAHQGVGSALNKALAGLEEHNHGLAGVLEH 123

Query: 118 FDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
            DF+  +            +  +FS   L  +      ++   YE+LIR F     +   
Sbjct: 124 IDFTRKVGSTTLPDRKLRDLIAHFSEYRLRNEDFEFPDLLGAAYEYLIRDFADSAGKKGG 183

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV +   L+           P     +YDP  G+GG L  A  ++ + G    
Sbjct: 184 EFYTPRPVVRMMVRLM----------DPQEGHRVYDPCMGSGGMLIMAKEYLEEHGGD-- 231

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291
            P +L   GQE      A+    ML+  + S        +++   TL+          KR
Sbjct: 232 -PRLLNLFGQEASGSVWAIAKMNMLLHGISS-------ADLRNEDTLTDPQHVEGGELKR 283

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANKLELP 349
           F   L+NPPF   +   +   E         RF  G          ++FL H+   L   
Sbjct: 284 FDRILTNPPFSIGYTPSQHFPE---------RFRYGSVPEGAKKADLMFLQHMVACL--- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  GR A V+    LF    G  E  IR  LLE+DL+EA++ L  +LF+ T I   + +
Sbjct: 332 -NANGRLATVMPHGVLFR---GGDEKRIRAGLLEDDLVEAVIGLAPNLFYGTGIPASILV 387

Query: 410 LSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
           L  +  K  ER+GKV  INA   +     EG+ +  +  +   +I   Y + E    F+ 
Sbjct: 388 LRAKGAKPAERQGKVLFINADREYH----EGRAQNHLLPEHIEKIASTYEAFEAVPGFAE 443

Query: 467 MLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLS---PLHQSFWLDILK 520
           ++   T       + + R    +   +   + A L+  +  +++    PL  +  LD + 
Sbjct: 444 VVPLETLRENDYNLNIRRYADNTPPPEPQDVRAHLKGGVPVKEIHAKRPLFDAHGLDPMG 503

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
               +     + +     + K +    ++  A 
Sbjct: 504 LFQSRSDDPDYVDFPPALTDKRDLKPAIEGDAG 536


>gi|313634903|gb|EFS01308.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 421

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 178/432 (41%), Positives = 255/432 (59%), Gaps = 22/432 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LAFGG 64
           +     +FIW  AE L G++K  ++G+VILP  ++RR +C LE T+  V E+Y  L    
Sbjct: 2   NFQDKVSFIWSIAEVLRGEYKPENYGEVILPLVVIRRFDCVLEKTKPEVLEQYKILQNKP 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +      K +   FYN S Y  + L     N  +N + Y+  FS NA  I + F+F S
Sbjct: 62  EGVQTALLTKTSKEDFYNISNYGFNNLLSDPDNIADNFKDYLNGFSKNANEIIQYFNFDS 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L++  LLY++ K FS I+LHP+TV +  M  I+E LIRRF       A D  TPR+
Sbjct: 122 EIDKLDRNDLLYEVLKRFSEIDLHPNTVSNIEMGYIFEELIRRFSENA--EAGDHYTPRE 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +   + G+ +TLYD   GTGG  + A  ++      H     L+ 
Sbjct: 180 VIRLMVHLLF-NDDRIDIATEGITKTLYDCAAGTGGMGSVANEYMK----SHNNLGELIF 234

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           H QE+  E++A+  + +L+++ +++       NI+ G+TL+ D F    F + +SNPP+G
Sbjct: 235 HAQEVNEESYAIAKSDLLLKKEDAN-------NIRLGNTLTNDKFKTDTFDFMISNPPYG 287

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAI 358
             W+K + AV+ EH + G  GRFG GLP+ SDG +LFL HL +K++        G R AI
Sbjct: 288 VDWKKVEKAVKDEHNDLGFNGRFGAGLPRTSDGQLLFLQHLVSKMKPVTEENPYGSRIAI 347

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIRR+L ENDL+E +VALP DLF+ T I+TY+WIL+N K   R
Sbjct: 348 IMNGSPLFTGDAGSGESEIRRYLFENDLVEGLVALPNDLFYNTGISTYIWILTNNKETHR 407

Query: 419 RGKVQLINATDL 430
           RGKV L+NA D 
Sbjct: 408 RGKVTLVNAVDF 419


>gi|149920793|ref|ZP_01909256.1| type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
 gi|149818311|gb|EDM77763.1| type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
          Length = 591

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 123/499 (24%), Positives = 204/499 (40%), Gaps = 37/499 (7%)

Query: 7   SAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           + + L + +W+ A  L G     TD+   ILP    +R+  A +  R  + + Y   G  
Sbjct: 100 NLSKLESHLWEAANILRGSPVDRTDWKSYILPLLFFKRICDAWDEEREDMLKAY--DGQV 157

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D   F    G  +      +     +   R+ +     +  D    +F D  +++   
Sbjct: 158 FPDEFRFDVPDGCHWRVVRGATKHVGKA--IRDAMRGIEQANQDKLLGVFGDASWTNK-E 214

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL    LL  + ++FS + L    V + V+ + YE+LI++F    ++ A +F TPR VV 
Sbjct: 215 RLPD-DLLKDLIEHFSKLSLGNKAVKNDVIGDAYEYLIKKFADSTNKKAGEFYTPRSVVR 273

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L    L           P    T+YDP CGTGG L  A+ HV D G   +        GQ
Sbjct: 274 LMVDTL----------DPQEGETIYDPACGTGGMLLAAVEHVKDAGGDPRTFFG-KLFGQ 322

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E    T +V    + +  +E    R      +     ++D  + ++F   L+NPPF  K 
Sbjct: 323 EKNLTTASVARMNLQLHGVEEFDIRRGDTLRRPAFASAED-HSLRQFDIVLANPPFSLKN 381

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      ++   GR   GLP    G   ++ H+   +     G GR A+VL    L
Sbjct: 382 WG-----RDVWESDPWGRAFAGLPTDKSGDFAWVQHMVKSM---APGHGRMAVVLPQGAL 433

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G A   E +IR+ LLE D IE ++ L  +LF+ T +A  + +L   K   R+ KV ++
Sbjct: 434 FRGGA---EGKIRKKLLELDRIEVVIGLAPNLFYGTGLAACILVLRMTKPAARKKKVLVV 490

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK--VLR 482
           + + L+   R     +  +  +   Q+L    + E+    +R++             + R
Sbjct: 491 DGSSLFRKGRA----QNHLEPEHGAQMLSWVRAFEDVEDRARVVSLDEIEEEDWTLNISR 546

Query: 483 PLRMSFILDKTGLARLEAD 501
            +      D   L    AD
Sbjct: 547 YVLPPIGKDIPPLPEAVAD 565


>gi|254190414|ref|ZP_04896922.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938090|gb|EDO93760.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 500

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 121/530 (22%), Positives = 212/530 (40%), Gaps = 47/530 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T +   L + +W++A  L G     DF   I P    +R+    +     + ++      
Sbjct: 7   TVTLGQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDE-----T 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDF 120
            +  L  F +   +       ++     ++N    L+  +        D    +F D  +
Sbjct: 62  GDEQLAWFPESHRFQIPEDCHWNDVRSKASNVGAALQRAMREIEKANPDTLYGVFGDAQW 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S+   RL  A LL  + ++FS + L  D V   V+ + YE+LI++F    ++ A +F TP
Sbjct: 122 SNK-ERLSDA-LLKDLIEHFSVLPLGNDNVNSDVLGDAYEYLIKKFADATNKKAGEFYTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L   +L           P    T+YDP CGTGG L  A+ HV +     K     
Sbjct: 180 RSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEMHGDVKRLWG- 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE    T ++    + +  +E D +      ++  +    D      F   ++NPP
Sbjct: 229 KLYGQEKNLTTSSIARMNLFLHGIE-DFQVLRGDTLRNPAFFEGDWLA--TFDCVIANPP 285

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  +        E    N   GR   GLP  S G   ++ H+   +    +  GR A+VL
Sbjct: 286 FSLEKWG-----EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---ADLTGRMAVVL 337

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L  RK  + + 
Sbjct: 338 PQGALFR---KGVEGSIRQKLLELDLVEAVIGLGPNLFYGTGLAACILVLRKRKPAKHKK 394

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS-RMLDYRTFGYRRIK 479
           KV + +A+ L+   R     +  +  +   +IL  Y    + + + R++           
Sbjct: 395 KVLIADASRLFRRGRA----QNYLEPEHAAEILGWYRGFADVQDAVRVVSLDEIKAEDWT 450

Query: 480 ------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                 VL PL+         +A  +  +T  + +    +  +     + 
Sbjct: 451 LNISRYVLPPLQEDVPPLPEAIAAFKDALTHCREAEERLAQVMTEGGWLQ 500


>gi|56421441|ref|YP_148759.1| hypothetical protein GK2906 [Geobacillus kaustophilus HTA426]
 gi|56381283|dbj|BAD77191.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 372

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 142/380 (37%), Positives = 214/380 (56%), Gaps = 29/380 (7%)

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGR 369
           E+    G  GRFG GLP+ISDG +LFL HL +K++        G R AI+++ SPLF G 
Sbjct: 3   EEHESKGFNGRFGAGLPRISDGQLLFLQHLVSKMKPVSEENPKGSRIAIIMNGSPLFTGD 62

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           AGSGESEIRR+L+ENDL+E IVALP  LF+ T I+TY+WIL+N K   R+GK+QL+NA +
Sbjct: 63  AGSGESEIRRYLIENDLVEGIVALPDQLFYNTGISTYIWILTNNKNPLRKGKIQLVNAVN 122

Query: 430 LWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            +  ++   G KR  ++++   +I+ IY   + G+  ++ D   FGYR+I + RPLR++F
Sbjct: 123 FYQKMKKSLGDKRNELSEEHINEIVRIYGDFKEGEHCKIFDNEDFGYRKITIERPLRLNF 182

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDIL-----KPMMQQIYP----------YGWAE 533
            +D+  +  L     ++ L+   +     +      K + +QI            Y   E
Sbjct: 183 KIDEERIKELYNQTAFKNLATSKKRGEAGLKEIEEGKRLQEQIIEALLSIKDGVVYKNRE 242

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
            F K+       K   +K + + + A ++A   KD  AD   D  G   PD +L + ENV
Sbjct: 243 EFTKKI--KELFKEKDIKINATLLKAILSALSEKDETADICRDSKGNPEPDPDLRDTENV 300

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P  E I +YF REV P+VPDA+ID+           ++GYEI F R+FY+Y P R  +++
Sbjct: 301 PLKEDIYEYFEREVKPYVPDAWIDETK--------TKIGYEILFTRYFYKYTPLRSSEEV 352

Query: 654 DAELKGVEAQIATLLEEMAT 673
             E+K +E  I   L+++  
Sbjct: 353 IKEIKELEGSILEKLKKVLG 372


>gi|291296826|ref|YP_003508224.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
 gi|290471785|gb|ADD29204.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
          Length = 538

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 183/489 (37%), Gaps = 69/489 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  T +       +WK A+ L G     ++  V+L    L+ +  A E     +  +   
Sbjct: 11  TPTTAATVGYEAELWKMADTLRGSMDAAEYKHVVLGLIFLKYISDAFEELHRKLEAERAQ 70

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-- 119
                   E     A   F+   E   + L +       +  I    DNA A  E  +  
Sbjct: 71  GADPEDPDE---YRAQNIFWVPPEARWAHLKA----QARQPTIGQLVDNAMACIERDNPA 123

Query: 120 ----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173
                    AR       L ++    S I++  +      V+  +YE+ + +F S   + 
Sbjct: 124 LKGVLPKEYARPALDKTRLGQLIDLISNIKVGDEEARAKDVLGRVYEYFLSQFASAEGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--- 230
             +F TPR VV L   +L           P     +YDP CG+ G    ++  +      
Sbjct: 184 GGEFYTPRCVVKLLVEML----------EPYHG-RVYDPCCGSAGMFVQSVEFIRAHATG 232

Query: 231 -GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G+  +    +  +GQE    T  +    + IR +E          I  G T   D F  
Sbjct: 233 NGNGGRAKADISIYGQESNYTTWRLAKMNLAIRGIEG--------QIAHGDTFHNDKFPD 284

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  + L+NPPF       +   +         R+  G+P + + +  ++ H+   L   
Sbjct: 285 LKADFILANPPFNVSDWGGERLRDD-------KRWQYGVPPVGNANFAWVQHIVYHL--- 334

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G A  VL++  + + +  SGE EIR+ L+E  L++ +VALP  LF+ T I   LW 
Sbjct: 335 -SPTGVAGFVLANGSMSSNQ--SGEGEIRKNLIEAGLVDCMVALPGQLFYSTQIPACLWF 391

Query: 410 LSNR---------------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           L+                 K  +RRG++  I+A  +   +    +  R + D+   +I  
Sbjct: 392 LARDRSSRPYGAAGAAPGGKFRDRRGEILFIDARKMGRMV---DRTHRELTDEDIAKIAS 448

Query: 455 IYVSRENGK 463
            Y +    K
Sbjct: 449 TYHAWRGEK 457


>gi|317130967|ref|YP_004097249.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475915|gb|ADU32518.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
          Length = 485

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 117/491 (23%), Positives = 214/491 (43%), Gaps = 39/491 (7%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L +++W  A  L G    +DF   I P    +R+    +     ++E    +G   
Sbjct: 2   KLEELESWLWGAANILRGPVDQSDFKSYIFPMLFFKRISDVYDE---ELQESMEIYGEDF 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +   F+   G  +      + +        +++     +  ++   IF D  +S+    
Sbjct: 59  DEEHRFIIPKGCHWNEVRSVTKNVGIK--ILSSIREIEKANPESLYGIFGDTQWSNKDKL 116

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            ++  +L ++ ++FS   L    V    M   YE+LI++F    ++ A +F TPR++V L
Sbjct: 117 TDE--ILIELIEHFSQYNLGNKNVKSNTMGQAYEYLIKKFADVANKKAGEFYTPREIVKL 174

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T LL           P    ++YDP CGTGG L +A++H+ D     +    L  +GQE
Sbjct: 175 MTMLL----------DPEENESIYDPACGTGGMLLEAVDHLNDTSRDART---LKLYGQE 221

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T ++    + +  LE D +   +  ++  +   +D      F   ++NPPF  K  
Sbjct: 222 KNLTTSSIARMNLFLHGLE-DFKIVRNDTLKNPAYFEEDKL--MTFDCVIANPPFSLKSW 278

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +     E K+   GR   G+P  ++G   ++ H+   +E+     GR A+VLS   LF
Sbjct: 279 GYE-----EWKDDPYGRNIAGIPPKTNGDYAWVQHMIKSMEMYT---GRMAVVLSQGVLF 330

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
              A   E +IRR LL+ DL++ ++ L  +LF+ TNI+  +      K  +R+GKVQ I+
Sbjct: 331 RAGA---EGKIRRELLQQDLLDTVIGLAPNLFYGTNISACILFFRKDKPVDRKGKVQFID 387

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLR 485
           A+ L+   RN    +  +  +   +I  +Y      K  + +            +  PL 
Sbjct: 388 ASQLFKKERN----QNTLLLEHVNEIFKLYNEYNTTKGKTSIATLDDIKSNNFNLNIPLY 443

Query: 486 MSFILDKTGLA 496
           +  I++  G++
Sbjct: 444 VKPIIEDDGIS 454


>gi|84385719|ref|ZP_00988750.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
 gi|84379699|gb|EAP96551.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
          Length = 492

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 120/529 (22%), Positives = 216/529 (40%), Gaps = 44/529 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MTE   + + L  ++ K A  L G    +DF   I P    +R+    +       E+  
Sbjct: 1   MTEK-LTLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEESG 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 S  ++  F    G  + +  E + +   +    + L     +  +    IF D 
Sbjct: 60  GDEEYASMPEMHRFEIPTGCHWRDVRETTTNVGIT--IEDALRGIEQANQEYLYGIFGDA 117

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +S+     ++  LL  + ++FS   L    V   ++ N YE+LI+ F    ++ A +F 
Sbjct: 118 QWSNKNKLSDE--LLINLVEHFSQHTLGNQNVAPDMLGNAYEYLIKHFADLTNKKAGEFY 175

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR VVHL   +L           P    T+YDP CGTGG L + ++H+ D    ++   
Sbjct: 176 TPRSVVHLLGMIL----------DPHEGETIYDPACGTGGMLLECVDHLKDNKEDYRT-- 223

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQE    + ++    M +  +E D        ++  +    D    K F   ++N
Sbjct: 224 -LKLFGQEKNLTSSSIARMNMFLHGIE-DFEILRGDTLRHPAFFEADGL--KTFDCVIAN 279

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K    +        N   GR   G+P   +G M ++ H+   +    N  GR  +
Sbjct: 280 PPFSLKEWGAE-----NWANDPYGRNIAGVPPKGNGDMAWVQHMVKSM----NSTGRMTV 330

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF   A   E +IR+ LLE D++EA++ L  ++F+ T +A  + +    K  ++
Sbjct: 331 VLPHGALFRKAA---EGKIRKQLLEQDMLEAVIGLGPNVFYGTQLAACVMVFKQNKPADK 387

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
           +GKV  I+A+D        G+ +  +  +  +QI D Y   ++   + ++          
Sbjct: 388 KGKVMFIDASD----QIRVGRAQNFLEPNHVQQIYDWYHGYQDVENYVKVASMDELAEND 443

Query: 478 IKVLRPLRMSFILDK----TGLARLEADITWRKLSPLHQSFWLDILKPM 522
             +  PL +  I++        A  +    W++     + F   +   +
Sbjct: 444 YNLNIPLYVEKIIEDNLPSVEEAMADLKQAWQESLEAEEKFKKVLKGFL 492


>gi|261367888|ref|ZP_05980771.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
 gi|282570699|gb|EFB76234.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
          Length = 500

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 101/520 (19%), Positives = 194/520 (37%), Gaps = 53/520 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   S       IW  A  L G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MADKNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAIFED 117
              G   + +     A   F+   +   S + +      + + I       +      +D
Sbjct: 59  ---GDGFEEDKDEYTAENIFFVPEDARWSVIAAAAHTPEIGTVIDEAMRSIEKENKRLKD 115

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +          L ++   F+ I++        ++   YE+ + +F  +  + A +F
Sbjct: 116 ILPKNFARPELDKRRLGEVVDLFTNIQMMEHGDSKDILGRTYEYCLSKFAEQEGKLAGEF 175

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L   +             +YDP CG+GG    +   + + G +    
Sbjct: 176 YTPSCVVRTLVEILQPYNG-----------RVYDPCCGSGGMFVQSAKFIENHGGNI--- 221

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +   GQ+  P T  +    + IR +E+D             T   D     +  + ++
Sbjct: 222 NKISVFGQDSNPTTWKMAQMNLAIRGIEAD------LGKFNADTFFNDCHPQLKADFIMA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +  ++         R+  G P   + +  ++ H+   L       GR  
Sbjct: 276 NPPFNLSDWGQEKLLDDV-------RWQYGTPPAGNANFAWMQHMIWHL----APNGRIG 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L +     GE EIR+ ++  DL++ IVA+P+ LF+ T I   LW L+  K  +
Sbjct: 325 MVLANGSLSSQS--GGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLAKNK--K 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYR 471
           ++GK   I+A  + T +    +K R + D+  +++ D Y +  +GK      F  +    
Sbjct: 381 QKGKTLFIDARKMGTMV---TRKLRELTDEDIQKLADTYNAFVDGKLEDVKGFCAVATTE 437

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
               +   +L P R   I ++        D   R    L 
Sbjct: 438 EIAKQDY-ILTPGRYVGIEEQQDDGEPFEDKMERLTKELS 476


>gi|209523721|ref|ZP_03272274.1| type I restriction-modification system, M subunit [Arthrospira
           maxima CS-328]
 gi|209495753|gb|EDZ96055.1| type I restriction-modification system, M subunit [Arthrospira
           maxima CS-328]
          Length = 513

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 125/530 (23%), Positives = 211/530 (39%), Gaps = 66/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT  T   A+L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-STQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGGDDSID 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      D +         F   S+   +   S NT  +L + +A+          
Sbjct: 60  YAKLSDSDIPDDFKDDAIKTKGYFIYPSQLFANIAASANTNESLNTDLAAIFAAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  +G++    D     +  + Y
Sbjct: 120 GYPSEPDIKGLFADFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGGFDASHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQQVSRLIAQLAMHQQTSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  D             +GQE+    + +    M +  +  +       NIQ G
Sbjct: 232 LLQAKKHFDDHRIEEG------FYGQEINHTNYNLARMNMFLHNINYNK-----FNIQLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL+   F  ++ F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 281 NTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E++IR++L++N+ +E ++AL  +
Sbjct: 336 AFVLHCLSYL----SSSGRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  K +      Q I+A+ L+    N       + DD   +I+ ++
Sbjct: 389 LFFGTPIAVTVLVLSKDKPDST---TQFIDASGLFKKETN----NNTLTDDHIAEIMGVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            S+EN   F+R + +           V   +      +K  + +L A++ 
Sbjct: 442 DSKENVDHFARSVPFEEIAANDYNLSVSSYVEAKDTREKVDITQLNAELK 491


>gi|126453526|ref|YP_001064382.1| type I restriction-modification system M subunit [Burkholderia
           pseudomallei 1106a]
 gi|242316390|ref|ZP_04815406.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106b]
 gi|126227168|gb|ABN90708.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106a]
 gi|242139629|gb|EES26031.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106b]
          Length = 822

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 116/514 (22%), Positives = 194/514 (37%), Gaps = 58/514 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + L   ++K A+ L G    ++F + I     L+R     +  R  V    LA G S 
Sbjct: 4   TLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSE 63

Query: 67  IDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFSDN---AKAIFED 117
            + +      +  G SFY         L +    +    L   +    +N      + E 
Sbjct: 64  FEAQTSADLKRWYGESFYVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEVLEH 123

Query: 118 FDFSSTIARLEKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
            DFS  + + +   +  +    +FS   L  +      ++   YE+LIR F     +   
Sbjct: 124 IDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPDLLGAAYEYLIREFADSAGKKGG 183

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV +   LL           P    ++YDP  G+GG L  +  ++ + G    
Sbjct: 184 EFYTPRSVVRMMVRLL----------KPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDGS 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291
                  +GQE      ++    ML+  +        + +++   TLS+          R
Sbjct: 234 RAE---LYGQEANGTVWSIAKMNMLLHGI-------ATADLRNDDTLSEPQHVEGGELMR 283

Query: 292 FHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANKL 346
           F   LSNPPF   W   + D+             RF  G          ++FL H+   L
Sbjct: 284 FDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFKYGEVALGSKKADLMFLQHMVAVL 343

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG+ A V+    LF    G  E  IR+ ++E DL+EA++ LP +LF+ T I   
Sbjct: 344 R----DGGQLATVMPHGVLFR---GGEEGAIRKAMIEADLVEAVIGLPANLFYGTGIPAC 396

Query: 407 LWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459
           + +L  R      K   R+GKV  INA   +     EG+ +  +  +   +I+  + +  
Sbjct: 397 ILVLRQRLGNATGKPVGRQGKVLFINADREYF----EGRAQNYLLPEHIEKIVSTFDAFA 452

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           E   FS ++   T       +   L         
Sbjct: 453 EVPCFSAIVSIATLRENDYNLNIRLYADNAPPPE 486


>gi|187930245|ref|YP_001900732.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|187727135|gb|ACD28300.1| N-6 DNA methylase [Ralstonia pickettii 12J]
          Length = 498

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/538 (22%), Positives = 213/538 (39%), Gaps = 55/538 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    + + L   +W++A  L G     DF   I P    +R+    +     + ++  
Sbjct: 1   MSNPQITLSQLEGHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFE 116
                + +L  F +   +       ++     ++N    L+  +        D    +F 
Sbjct: 59  ---TGDEELAWFPESHRFQIPEDCHWNDVRAKASNVGTALQRAMREIERANPDTLYGVFG 115

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A +
Sbjct: 116 DAQWSNK-ERLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNKKAGE 173

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     K 
Sbjct: 174 FYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEMHGDVKR 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RF 292
                 +GQE    T ++    + +  +E          + +G TL    F        F
Sbjct: 224 LWG-KLYGQEKNLTTSSIARMNLFLHGIED-------FQVVRGDTLRNPAFFEGDRLATF 275

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  +        E    N   GR   GLP  S G   ++ H+   +    + 
Sbjct: 276 DCVIANPPFSLEKWG-----EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---ADA 327

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+VL    LF       E  IR+ LLE DL++A++ L  +LF+ T +A  + +L  
Sbjct: 328 TGRMAVVLPQGALFR---KGVEGSIRQKLLEMDLVDAVIGLAPNLFYGTGLAACILLLRK 384

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS-RMLDYR 471
           RK+ + + KV + +A+ L+   R     +  +  +   +IL  Y    N + + R++   
Sbjct: 385 RKSAKHKKKVLIADASRLFRRGRA----QNYLEAEHAAEILGWYRGFANVQDAVRVVSLD 440

Query: 472 TFGYRRIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                         VL PLR         +A  +  +T  + +    +  +     + 
Sbjct: 441 EIKAEDWTLNISRYVLPPLREDIPPLPVAIASFKDALTHCREAEERLAQVMTKGGWLK 498


>gi|332704540|ref|ZP_08424628.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554689|gb|EGJ51733.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 564

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 113/523 (21%), Positives = 199/523 (38%), Gaps = 78/523 (14%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT   G+ + L  A+ +WK A+ L G     ++  V+L    L+ +  + E  R  ++ +
Sbjct: 1   MTNNDGTNSELVYADTLWKAADTLRGQVDAAEYKHVVLGLLFLKYISDSFEARREELQAE 60

Query: 59  YLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
               G +   L + ++      A   F+   E   + L +  TR ++ + I         
Sbjct: 61  LQTDGITEPQLTALLENRDEYTAERVFWVPPEARWANLQNQATRADIATLID--DAILAI 118

Query: 114 IFEDFDFSSTIARLE-----KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167
             ++ +  S + R       ++G L ++ +  + +    D       +  +YE+ + +F 
Sbjct: 119 ERDNPNLKSKLPRDYARRGIESGRLKRLIELIADVGFKGDRAKARDTLGRVYEYFLGKFA 178

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TPR VV L   ++   +             +YDP CG+GG    +   V
Sbjct: 179 QAEGKLGGEFYTPRCVVRLLVEMIEPYNG-----------RVYDPCCGSGGMFVQSERFV 227

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +   GQE  P T  +    + IR +E+      +   Q   T  ++L 
Sbjct: 228 EAHGGQ---KTDISIFGQESNPTTWRLAHMNLAIRSIEA------NLGSQPADTFLRNLH 278

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +  R  Y L+NPPF       K   +         R+  G P + + +  ++ H  + L 
Sbjct: 279 SDLRADYILANPPFNVSDWSGKLLQDDV-------RWRYGTPPLGNANYAWIQHFIHHLA 331

Query: 348 LPP-NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           LP   GGG A  V+++  L       GE EIR+ ++E DL++AIVALP  LFF T I   
Sbjct: 332 LPNGRGGGVAGFVMANGSL--SSNAGGEGEIRQRIVEADLVDAIVALPAQLFFTTGIPVC 389

Query: 407 LWILSNRK------------TEERRGKVQLINATDLWTSIRNEGKKRRIIN--------- 445
           LW L+  K             + R+G+   I+A  L      + +  R++          
Sbjct: 390 LWFLTRDKTGKNLKNGCPNRPDGRKGETLFIDARKLGIM---QTRTLRVLTGGDSGETLL 446

Query: 446 ---------DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
                    D    +I+  +            D    G     
Sbjct: 447 ADGIGDPKPDSDIGRIVYAFRQWRGEPKPEWWDEEKHGGWAYC 489


>gi|59713718|ref|YP_206493.1| DNA methylase M [Vibrio fischeri ES114]
 gi|59481966|gb|AAW87605.1| DNA methylase M [Vibrio fischeri ES114]
          Length = 493

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 118/503 (23%), Positives = 210/503 (41%), Gaps = 40/503 (7%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           + + L  ++ K A  L G    +DF   I P    +R+    +       E+        
Sbjct: 6   TLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEESDGDEEYA 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           S  ++  F    G  + +  E + S   +    + L     +  +    IF D  +S+  
Sbjct: 66  SMPEMHRFEIPTGCHWRDVRETTTSVGIT--IEDALRGIEQANQEYLYGIFGDAQWSNKN 123

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
              ++  LL  + ++FS   L    V   ++ N YE+LI+ F    ++ A +F TPR VV
Sbjct: 124 KLSDE--LLINLVEHFSQYTLGNQNVEPDMLGNAYEYLIKHFADLTNKKAGEFYTPRSVV 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL   +L           P    T+YDP CGTGG L + ++H+ D    ++    L   G
Sbjct: 182 HLLGMIL----------DPHEGETIYDPACGTGGMLLECVDHLKDNKEDYRT---LKLFG 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    + ++    M +  +E D        ++  +    D    K F   ++NPPF  K
Sbjct: 229 QEKNLTSSSIARMNMFLHGIE-DFEILRGDTLRHPAFFEADGL--KTFDCVIANPPFSLK 285

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +        N   GR   G+P   +G M ++ H+   L    N  GR  +VL    
Sbjct: 286 DWGSE-----NWANDPYGRNIAGVPPKGNGDMAWVQHMVKSL----NSTGRMTVVLPHGA 336

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF   A   E +IR+ LL+ D++EA++ L  ++F+ T +A  + +    K  +++GKV  
Sbjct: 337 LFRKAA---EGKIRKQLLDQDMLEAVIGLGPNVFYGTQLAACVMVFKQNKPADKKGKVMF 393

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRP 483
           I+A+D        G+ +  +  +  +QI D Y + ++   + ++            +  P
Sbjct: 394 IDASD----QIRVGRAQNFLEPNHVQQIYDWYHNYQDVENYVKVASMDELAENDYNLNIP 449

Query: 484 LRMSFILDKTGLARLEADITWRK 506
           L +  I++   L  +E  +   K
Sbjct: 450 LYVEKIIED-NLPSVEEAMADLK 471


>gi|312876125|ref|ZP_07736113.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797111|gb|EFR13452.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 599

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 119/587 (20%), Positives = 231/587 (39%), Gaps = 58/587 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++K A+ L G    +++ + I     L+      E  R  +++++ 
Sbjct: 1   MAGDKITLRQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELKDRFK 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
           A G S   +   ++     G +F+   +     +        N  N   S +   +    
Sbjct: 61  AMGFSEKQIHELLEDPSSYGDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELD 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            + +  DF++   +   K   L  +  +F+  +L P       ++   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQEL   T ++C   M++  +          +I+    L+  +F   
Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIND-------AHIENEDVLTTPMFLEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              KRF   L+NPPF + + +     E+  K G     G          ++FL H+   L
Sbjct: 281 GYIKRFDRILANPPFSENYTRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 K----DDGVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFS 465
           + +++  K E+ + K+  INA   +   RN    +  +  +   +I+ ++   +E  K+S
Sbjct: 388 IIVINKNKPEQLKNKILFINADREYGEGRN----QNFLRPEDIEKIVTVFDEKKEIPKYS 443

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKL---SPLHQSFWLDIL 519
           R++D +        + + R +  S   +   + A L   +  +++       + F L   
Sbjct: 444 RLVDIKEIEENDFNLNIRRYVDNSPDPEIEDVHAHLFGGVPKKEVLLYEKQLRKFNLSYD 503

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
             + ++   Y   +  + +  +  E      +   +           
Sbjct: 504 ILLAEKSENYLEFKEDIADRNQIRELIDNCTEVKVTIEKHKEKLLKW 550


>gi|86742693|ref|YP_483093.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86569555|gb|ABD13364.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 816

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 114/553 (20%), Positives = 211/553 (38%), Gaps = 62/553 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++  A+ L G    ++F + I     L+R     E     +  + +A G S 
Sbjct: 52  TLPQLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEKRIIAQLIADGRSR 111

Query: 67  IDLES---FVKVAGYSFYNTSEYSLSTLG---STNTRNNLESYIASF----SDNAKAIFE 116
            D E         G + Y   +   + L      N  + L   +       S   + + +
Sbjct: 112 TDAERQATLRARYGDTLYVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGVVQ 171

Query: 117 DFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
             DF+ T+ +          +  +F+ + L  +      ++   YE+LI  F     +  
Sbjct: 172 HIDFTRTVGQSSIPDRKLRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFADSAGKKG 231

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV +  AL+           P     +YDP  G+GG L  A + VA+ G   
Sbjct: 232 GEFYTPRAVVRMMVALV----------DPKPGMEVYDPCSGSGGMLILARDWVAEHGGD- 280

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
             P  L   GQE      ++    +L+  +          +I+ G TL++ +       +
Sbjct: 281 --PRNLRLVGQEYNGGVWSISKMNLLLHGI-------PDADIRNGDTLAEPMHVSSGELE 331

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   LSNPPF + + ++    E         R+G          ++F+ H+   L    
Sbjct: 332 RFDRVLSNPPFSQNYSREGMDRENRF------RWGWAPEGGKKADLMFVQHMVAVLRA-- 383

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA V+    LF G     E +IR  LL++D+IEA++ L  +LF+ T I   + +L
Sbjct: 384 --NGVAATVMPHGVLFRGGT---ERDIRTALLDDDVIEAVIGLAPNLFYGTGIPACVLVL 438

Query: 411 S--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
                K  ER GKV  +NA   + + R     +  +  +   +I+  Y    +   ++++
Sbjct: 439 RAPGSKPAERAGKVLFVNADAEFRAGRA----QNYLMPEHVEKIVAAYHGFTDIPSYAKV 494

Query: 468 LDYRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSP---LHQSFWLDILKP 521
           +           + + R    +  L+   + A L   +   +++    L  +   D+ + 
Sbjct: 495 VTREELRAADDNLNIRRYADNAPPLELQDVRAHLHGGVPRAEVAAKAGLFAAHGFDLGEV 554

Query: 522 MMQQIYPYGWAES 534
            + +   Y     
Sbjct: 555 FVDRDADYLDFAD 567


>gi|94986116|ref|YP_605480.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|94556397|gb|ABF46311.1| Type I restriction-modification system DNA methylase [Deinococcus
           geothermalis DSM 11300]
          Length = 517

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 194/471 (41%), Gaps = 58/471 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T   G        ++K A+ L G+ + +D+  V L    L+ +  A E    A+  +   
Sbjct: 7   TNSNGGNLGFEADLFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHQALLAE--- 63

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                   +    +A   F+   E   S L +   R       +     I   +++ K +
Sbjct: 64  --DPRAAEDRDEYLADNVFWVPKEARWSHLRANARRPEIGLLIDEAMRAIEKENESLKGV 121

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L  +      ++  +YE+ + +F     + 
Sbjct: 122 LPKDYARPALNKV----MLGELIDLISGIALGEEGDRSKDILGRVYEYFLGQFAGAEGKR 177

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   +L           P     +YDP CG+GG    +   V + G  
Sbjct: 178 GGEFYTPRSVVRVLVEML----------EPYHG-RVYDPCCGSGGMFVQSEKFVQEHGGR 226

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +C   + +R +++D R +         +  KD     +  
Sbjct: 227 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDADIRWNNEG------SFHKDELRDLKAD 277

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +       +  E  R+  G+P + + +  +L H+ + L       
Sbjct: 278 FILANPPFNISDWGGE-------RLREDVRWSFGVPPVGNANYAWLQHIHHHL----APN 326

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + +  SGE EIR+ ++E D+++ +VALP  LF+ T I   LW L+  
Sbjct: 327 GTAGVVLANGSMSSNQ--SGEGEIRKAMVEADVVDCMVALPGQLFYSTQIPACLWFLARN 384

Query: 414 KT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           K       +RRG+V  I+A  L   +    + RR + D + ++I D Y + 
Sbjct: 385 KNPGKGLRDRRGQVLFIDARKLGVLV---DRTRRELTDAEIQKIADTYHAW 432


>gi|163847372|ref|YP_001635416.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222525218|ref|YP_002569689.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl]
 gi|163668661|gb|ABY35027.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222449097|gb|ACM53363.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl]
          Length = 528

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 120/563 (21%), Positives = 215/563 (38%), Gaps = 79/563 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E TG+       +W+ A  L G     ++  V+L    L+ +  A E  R    E+    
Sbjct: 12  ETTGANLGFEPQLWQTANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHR----ERLQNI 67

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIF 115
             ++ +     + A   F+   +     L +   + N+   I          + + K + 
Sbjct: 68  PNADPEDPDEYR-ADNVFWVPPDARWVELRNNARQPNIGELIDQAMIAVERDNPSLKGVL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGA 174
                   + +     L        S I +   +     V+  +YE+ + +F S   +  
Sbjct: 127 PKDYARPALDQQRLGQL----IDLVSNIPVGTASARSKDVLGRVYEYFLSQFASAEGKKG 182

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC---- 230
            +F TPR VV L   +L                 +YDP CG+ G    ++  +       
Sbjct: 183 GEFYTPRCVVRLLVEMLEPYQG-----------RVYDPCCGSAGMFIQSVEFIEAHATGN 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G+  +    +  +GQEL   T  +    + IR ++          I+QG T   D F   
Sbjct: 232 GNGSRARARISIYGQELNYTTWRLAKMNLAIRGIDG--------RIEQGDTFRNDRFPDL 283

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF  K    +             R+  G+P + + +  ++ H+ + L    
Sbjct: 284 KADYILANPPFNMKEWGGEQLRND-------KRWQYGIPPVGNANFAWVQHIVHHLAPA- 335

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G A  VL++  + + +  SGE EIRR L+E DL++ +VALP  LF+ T I   LW L
Sbjct: 336 ---GVAGFVLANGSMSSNQ--SGEGEIRRKLIEADLVDCMVALPGQLFYSTQIPACLWFL 390

Query: 411 ----SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------- 458
               +N K  +RR ++  I+A  L   +    +  R + D++  +I   Y +        
Sbjct: 391 ARNRNNGKFRDRRKQILFIDARRLGRMV---DRIHRELTDEEIERIACTYHAWRGESDAG 447

Query: 459 --RENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL--H 511
             R+   F +   + D R  GY    VL P R      +       A+     ++ L   
Sbjct: 448 EYRDIPGFCKSASLEDVRKHGY----VLTPGRYVGSEVREDDDEPFAEKMQWLVAQLREQ 503

Query: 512 QSFWLDILKPMMQQIYPYGWAES 534
           Q+    + + ++  +   G+ E 
Sbjct: 504 QAEAAKLDEAIVANLQELGFWEQ 526


>gi|257438277|ref|ZP_05614032.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
 gi|257199239|gb|EEU97523.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
          Length = 501

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 108/523 (20%), Positives = 194/523 (37%), Gaps = 53/523 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   + +     
Sbjct: 1   MAEKNTADIGFEKQIWNAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVADGD 60

Query: 61  AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            F     +  S   F   AG  + + S  +          + + +             +D
Sbjct: 61  GFEEDRDEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKEN-----VRLKD 115

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +   +      L ++   F+ I++        ++   YE+ +  F  +  +   +F
Sbjct: 116 ILPKNFARQELDKRRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEF 175

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L                 +YDP CG+GG    +   V +   H    
Sbjct: 176 FTPSCVVRTLVEVLQPFKG-----------RVYDPCCGSGGMFVQSAKFVEN---HSGNI 221

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQ+  P T  +    + IR +E D             T   D     R  Y ++
Sbjct: 222 NDISIYGQDSNPTTWKLAQMNLAIRGIEPD------LGKYAADTFLDDQHPTMRADYIMA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +   +         R+  G+P  S+ +  +L H+   L      GGR  
Sbjct: 276 NPPFNLSNWGAEQLKDDV-------RWQYGMPPASNANFAWLQHMIYHL----APGGRMG 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L +     GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S RK  +
Sbjct: 325 MVLANGSLSSQS--GGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKRK--K 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDYR 471
           + GK   I+A  +   +    +K R + D+  ++I D Y +  NG       F  ++D  
Sbjct: 381 QAGKTLFIDARKMGDMV---SRKLRELTDEDIKKIADTYNAYVNGTLEDVKGFCAVVDTE 437

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +   +L P R   + ++        +   R  S L   F
Sbjct: 438 KIAEQDY-ILTPGRYVGVEEQEDDGEPFEEKMARLTSELSDLF 479


>gi|268316649|ref|YP_003290368.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252]
 gi|262334183|gb|ACY47980.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252]
          Length = 527

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/524 (22%), Positives = 201/524 (38%), Gaps = 66/524 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L  ++W  A  + G      F   ILP   L+RL    E     + E+Y +   +   
Sbjct: 6   STLETWLWDAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDEMDRLAEEYGSREVAQHI 65

Query: 69  LESFVKV-------AGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIF 115
           +E   +            FY         +      G      +    +A  +   + + 
Sbjct: 66  VEEEREQGIIARGGGSVRFYIPENARWKAIRTRGQVGLGQFLTDAVRAVARENPRLQGVI 125

Query: 116 EDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +  DF++T    R+     L ++    S   L    V   ++   YE+L+R+F     + 
Sbjct: 126 DIVDFNATAAGQRIVADEYLARLVDVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQGQS 185

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN-----HVA 228
           A +F TPR+V  L   +L           P    T+YDP CG+GG L          H  
Sbjct: 186 AGEFYTPREVAVLMARIL----------EPQPGMTVYDPCCGSGGLLIKCHLRLLETHGE 235

Query: 229 DCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           +   H ++P     L   GQE+ P T A+     +I  +E+D         + G T+   
Sbjct: 236 EQNGHRRLPAHHAPLQLFGQEINPATFAMARMNAVIHDMEADI--------RLGDTMRHP 287

Query: 286 LFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            F  +      F    +NP + + +  D       ++N    RF  G+P  S     +L 
Sbjct: 288 AFRDETGRLMAFDLVTANPMWNQNFPTDL------YENDPYERFHLGIPPASSADWGWLQ 341

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDL 397
           H+   L    N  GR A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +L
Sbjct: 342 HMLASL----NDTGRMAVVLDTGAVSRGSGNQGASRERDIRKAFVERDLIEAVILLPENL 397

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T     + +++ +K     G++ LINA+ L+   R +      + D+    I  +Y 
Sbjct: 398 FYNTTAPGIIIVINRKK--RHPGEILLINASKLFAKGRPK----NYLTDEHIETIARLYH 451

Query: 458 SRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
             +     S ++           +     ++    +  L   EA
Sbjct: 452 EWQAEEGLSAIITNEEAARNDYNLSPSRYVAQNGAEETLPLEEA 495


>gi|160945580|ref|ZP_02092806.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443311|gb|EDP20316.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii
           M21/2]
          Length = 500

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/523 (20%), Positives = 193/523 (36%), Gaps = 53/523 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   + +     
Sbjct: 1   MAEKNTADIGFEKQIWNAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVADGD 60

Query: 61  AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            F     +  S   F   AG  + + S  +          + + +          A  +D
Sbjct: 61  GFEEDRDEYTSEGIFFVPAGARWSDVSTKAHDPEIGQVIDDAMRAIEKEN-----ARLKD 115

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +          L ++   F+ I++        ++   YE+ +  F  +  +   +F
Sbjct: 116 ILPKNFARPELDKRRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEF 175

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L                 +YDP CG+GG    +   V +   H    
Sbjct: 176 FTPSCVVRTLVEVLQPFKG-----------RVYDPCCGSGGMFVQSAKFVEN---HSGNI 221

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQ+  P T  +    + IR +E D             T   D     R  Y ++
Sbjct: 222 NDISIYGQDSNPTTWKLAQMNLAIRGIEPD------LGKYAADTFLDDQHPTMRADYIMA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +   +         R+  G+P  S+ +  +L H+   L      GGR  
Sbjct: 276 NPPFNLSNWGAEQLKDDV-------RWQYGMPPASNANFAWLQHMIYHL----APGGRMG 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L +     GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S RK  +
Sbjct: 325 MVLANGSLSSQS--GGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKRK--K 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDYR 471
           + GK   I+A  +   +    +K R + D+  ++I D Y +   G       F  ++D  
Sbjct: 381 QAGKTLFIDARKMGAMV---SRKLRELTDEDIKKISDTYNAYVEGTLEDVKGFCAVVDTE 437

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +   +L P R   + ++        +   R  S L   F
Sbjct: 438 KIAEQDY-ILTPGRYVGVEEQEDDGEPFEEKMVRLTSELSDLF 479


>gi|257790529|ref|YP_003181135.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257474426|gb|ACV54746.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 799

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 177/555 (31%), Positives = 269/555 (48%), Gaps = 44/555 (7%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +     W  A+ L G +K  ++G VILP T+++R    L PT   V E    +    +  
Sbjct: 20  TFGTLPWNVADTLRGPYKPHEYGLVILPMTVIKRFHDCLLPTHGKVVEAAEEYKNFAVKD 79

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               + +GY FYNTS+++  TL +   N  +N + Y+  FS+N + I    DF   I RL
Sbjct: 80  GFLREASGYPFYNTSKFTFETLKADPANIEDNFKDYLNGFSENVQDILARMDFFRQIERL 139

Query: 128 EKA--GLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                 LLY++  +F     ++ P+ +    M  I+E+LI+RF     E A    T RD+
Sbjct: 140 SDPDAPLLYQVVSDFCAERADMSPEKIKPVDMGYIFENLIQRFSESYDEDAGAHFTSRDI 199

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V+L T LL+  D  +F +   + +T+YD T GT   L+     +       ++       
Sbjct: 200 VYLMTDLLIAADPHVF-DGDRISKTVYDQTMGTSQMLSCTEERLRQLDDDARV----TCF 254

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +  A  LIR  +         N++ G TLS D F   +F YC+SNPPFG 
Sbjct: 255 GQEFNPFTFGIAKASALIRGEDD-------ANMRFGDTLSSDKFADYKFDYCISNPPFGG 307

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            W+ ++ AV KE K     RF  GLP   DG MLF+++   KL+      G   IV  +S
Sbjct: 308 DWKLEETAVRKEAKL-TGSRFHVGLPARGDGQMLFMLNGIAKLK----DEGVMVIVQDAS 362

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PL+ G+  SGE +IR ++LEND ++AI+ L  D F+ T + T+LW+++  K E+R GKVQ
Sbjct: 363 PLYKGKPESGEDKIRSYILENDWLDAIIRLSGDAFYNTGLVTFLWVINKGKPEKRAGKVQ 422

Query: 424 LINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSR-------------MLD 469
           LI+A+       R  GKKR  I    R  +L+ +   E   +S              + D
Sbjct: 423 LIDASGCCVPRNRPIGKKRNDITKFCRDLVLEAFSDFETKDYSSSSESGNAIHVRSLVCD 482

Query: 470 YRTFGYRRIKVLRPL---RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
              FGY R+ V  PL     S ++DK G    +A+    +  PL      DI + M +++
Sbjct: 483 AADFGYNRVGVCEPLFNPDGSIVVDKKGSPVADAEREDTEDIPLS----YDIDEYMEKKV 538

Query: 527 YPYGWAESFVKESIK 541
            P+       ++  K
Sbjct: 539 LPFNEHAWLNRKKQK 553



 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           +P    V D  G  + D    + E++P    I +Y  ++V P    A++++        +
Sbjct: 499 NPDGSIVVDKKGSPVADAEREDTEDIPLSYDIDEYMEKKVLPFNEHAWLNR--------K 550

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
             + GY I F RFFY++     + D   EL
Sbjct: 551 KQKTGYTIPFTRFFYEFMDLETVNDAAQEL 580


>gi|227510763|ref|ZP_03940812.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189765|gb|EEI69832.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 540

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/574 (22%), Positives = 226/574 (39%), Gaps = 78/574 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
            V  KY  +     +LE                GY     + Y+            L+  
Sbjct: 61  NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 104 IASFSD------------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD 148
             +  D            +   +F D D SS        ++   +       + I+L   
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+    +RT
Sbjct: 181 --QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRT 234

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  +  D 
Sbjct: 235 IYDPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTYNLARMNLMLHGVSYD- 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ G TLSKD    +   F   + NPP+   W    D  +K   +     +G 
Sbjct: 287 ----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRFRDYGV 338

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF    G+ E +IR+ LL ++ 
Sbjct: 339 -LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFR---GAKEGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTGIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
              ++I+  Y +R++  K++ +    + +   Y  + + R +       +  L +++AD+
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDY-NLNIPRYVDTFEPEPEIDLDQVKADL 502

Query: 503 T--WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                ++S   Q+F     + +  Q+      E+
Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQVNDQSKLEA 536


>gi|85716963|ref|ZP_01047927.1| type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
 gi|85696242|gb|EAQ34136.1| type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
          Length = 500

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 205/526 (38%), Gaps = 56/526 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            +     L + +W  A  L G     TD+   ILP    +R+    +   +  RE Y   
Sbjct: 1   MSQQFQELRSALWDAANTLRGSAVDRTDWKGYILPLLFFKRISDVWDEETTEARELYGDA 60

Query: 63  GGS-NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDF 120
             S   ++  F    G  + +  E       + N    L+  +      N   +F  F  
Sbjct: 61  DPSLFPEIHRFALPEGCHWNDVREV------AANVGAALQRAMQEIERANPDTLFRVFGT 114

Query: 121 SSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE-GAEDFM 178
           +    R +    LL  + + FS I+L    V   V+ + YE+L+ +F        A +F 
Sbjct: 115 ADWGNREKFSDELLKDLIEGFSEIQLGNKAVSTDVLGDAYEYLVGKFADVTRRNKAGEFY 174

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR +V +   +L           P    ++YDP CGTGG L  A+ HV   G   +   
Sbjct: 175 TPRSIVRMMVDIL----------DPQEGESIYDPACGTGGMLLGAIEHVVRNGGDPRTFY 224

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292
               +GQE    T A+    +++  +E          + +  TL    FT         F
Sbjct: 225 G-KIYGQEKNLTTAAIARMNLVLHGIED-------FQVAREDTLRNPAFTDSSTSGLATF 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  K            +    GR   G+P  S G   F+ H+   +   P G
Sbjct: 277 DCVIANPPFSLKEWG-----RDLWEADPWGRAQYGIPPESYGDYAFVQHMIASM--VPIG 329

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             R A+VL    LF   A   E  IRR LLE D++EA++ L  +LF+ T +A  + +L  
Sbjct: 330 NSRMAVVLPQGALFRKSA---EGTIRRALLEQDMVEAVIGLAPNLFYGTQLAGCVMVLRR 386

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM--LD 469
           RK E  + KV +I+A+ L+   R     +  ++     QI+  Y +  +    +++  LD
Sbjct: 387 RKPENHQNKVLIIDASSLFRKGRA----QNFLDQGHSDQIVAWYRAFADVADRAKVATLD 442

Query: 470 YRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLH 511
                   + + R    P+          +  L+  +   + +  H
Sbjct: 443 EIKKEGWTLNISRYVLPPIGQDIPPLPKAVEALKTALADARAAEDH 488


>gi|307150615|ref|YP_003885999.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822]
 gi|306980843|gb|ADN12724.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7822]
          Length = 526

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 118/564 (20%), Positives = 203/564 (35%), Gaps = 83/564 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T   G+   L + +WK A+ L G     ++  V+L    L+ +  A            L+
Sbjct: 10  TASNGNTVKLEDKLWKAADKLRGHLDAAEYKHVVLGLIFLKYISDAF-----GELYDKLS 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                   +     A + F+   E   S L +           +     I   + + K +
Sbjct: 65  TDEYADPEDKDEYTAEHIFWVPVEARWSHLQAKAKTPDIGKFVDEAMEAIEKENPSLKGV 124

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + +     LL ++      I L         ++  +YE+ + +F S   + 
Sbjct: 125 LPKDYGKPALDK----RLLGELIDLIGTIGLGDAQNRSQDILGRVYEYFLGQFASAEGKK 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR VV L   +L           P     +YDP CG+GG    +   V   G  
Sbjct: 181 GGQFYTPRCVVELLVDML----------EPYKG-RVYDPCCGSGGMFVQSEKFVEAHGGK 229

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P T  +C   + IR ++       +   +   +   DL    +  
Sbjct: 230 IG---DISIYGQESNPTTWKLCKMNLAIRGIDG------NLGAKNADSFRNDLHKELKAD 280

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF       +   E         R+  G P + + +  ++  +   L       
Sbjct: 281 YILANPPFNVSDWGGQHLRED-------SRWIYGTPPVGNANYAWIQQIITHL----APN 329

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  VL++  + + +  SGE EIR+ L+E DL++ +VALP  LF+ T I   LW L+  
Sbjct: 330 GIAGFVLANGSMSSNQ--SGEGEIRKALVEADLVDCMVALPGQLFYNTQIPACLWFLTRN 387

Query: 414 KT------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-- 459
           K              +R+G+   I+A  L   I    +  R +  ++  +I + Y +   
Sbjct: 388 KGQSPLTLLNKGGMRQRKGETLFIDARKLGVLI---DRVHRELTSEEITRIAETYHNWRG 444

Query: 460 -------ENGKFSR---MLDYRTFGYRRIKVLRPLRM--SFILDKTGLARLEADITWRKL 507
                  +   F +   + D R  GY    VL P R   +  +D       E      KL
Sbjct: 445 SGKGEYEDVPGFCKSAALEDIRGHGY----VLTPGRYVGAEEVDDDDEPFEEKMERLTKL 500

Query: 508 SPLHQSFWLDILKPMMQQIYPYGW 531
                S    +   + Q +  +G+
Sbjct: 501 LEEQFSESARLENEICQNLREFGY 524


>gi|163737287|ref|ZP_02144705.1| Type I restriction-modification system methylation subunit
           [Phaeobacter gallaeciensis BS107]
 gi|161389891|gb|EDQ14242.1| Type I restriction-modification system methylation subunit
           [Phaeobacter gallaeciensis BS107]
          Length = 821

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/596 (20%), Positives = 220/596 (36%), Gaps = 70/596 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L   ++  A+ L G    ++F + I     L+R     E  R  V +K +A G + 
Sbjct: 4   TLAQLERHLFSAADILRGKMDASEFKEYIFGMLFLKRCSDVFEQARLEVVQKRIASGVAP 63

Query: 67  IDLESFVKVAGY-----SFYNTSEYSLSTL---GSTNTRNNLESYIASFSDN---AKAIF 115
                  +   +     +F+   +     L      N  + L   +          + + 
Sbjct: 64  EQAAEEAENKVWYGRSGTFWVPPQSRFGHLVDEAHENIGDKLNKALGGVESENIALEGVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173
           +  DF+  + + + +    +    +F  I L  +      ++   YE+LI  F     + 
Sbjct: 124 DHIDFTRKVGQSKISDQKLRQLINHFGEIRLRNEDFEFPDLLGAAYEYLIGEFADSAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   LL           P +   +YDP CG+GG L  A +++ + G  
Sbjct: 184 GGEFYTPRSVVRMMVRLL----------KPTLEHDIYDPCCGSGGMLIAAKDYIDEHGQD 233

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
            +        GQE      ++    ML+  + S        +++   TL +         
Sbjct: 234 GRRAN---LFGQENSGTVWSIAKMNMLLHGINS-------ADLRNEDTLGEPQHVEDGEL 283

Query: 290 KRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           +RF   L+NPPF   W   +KD+              F           ++FL H+    
Sbjct: 284 RRFDRILTNPPFSINWGSKDKDRSGEYTWQPKFRERFFHEVPLGSKKADLMFLQHMLA-- 341

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG  A V+    LF    G  E +IR+ ++E+D +EA++ L   LF+ T I   
Sbjct: 342 --VSRDGGMIATVMPHGVLFR---GGDEGKIRQKIIESDQVEAVIGLGPQLFYGTGIPAC 396

Query: 407 LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + +L  R          K  ER+GKV  INA   +     EG+ +  +  +   +I+  +
Sbjct: 397 VIVLRQRVHHGANLVSGKPAERQGKVLFINADREYF----EGRAQNHLLPEHIEKIVTTF 452

Query: 457 VS-RENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLS---P 509
              R    FS ++D  T       + + R    +   +   + A L   I   ++     
Sbjct: 453 EEYRAIPGFSAIVDIDTLRENDFNLNIRRYADNAPPPEPHDVRAHLVGGIPKAEVEAKAD 512

Query: 510 LHQSFWLDILKPMMQQIYPYGWAES--FVKESIKSNEAKTLKVKASKSFIVAFINA 563
           L QS  L+ +  +  +   Y    +    K  +K        + A ++ I    NA
Sbjct: 513 LFQSHGLNPMDLLTPRDENYLDFAASLTAKSDLKPAIETNAGLTAREAEIKDSFNA 568


>gi|291277029|ref|YP_003516801.1| type I restriction-modification system M protein [Helicobacter
           mustelae 12198]
 gi|290964223|emb|CBG40072.1| type I restriction-modification system M protein [Helicobacter
           mustelae 12198]
          Length = 542

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 119/545 (21%), Positives = 205/545 (37%), Gaps = 65/545 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              + L N IWK A +L G     DF + +L     R +   L    +A   K   +   
Sbjct: 34  NEQSELHNTIWKVANELRGSVDGWDFKQYVLGMIFYRYISENLANYINAREGKPKFYEDL 93

Query: 66  NIDL-----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
           + ++     E  +K  G+ F   S    + + +     NL + + +              
Sbjct: 94  SDEIAETVREDLIKAKGF-FIPPSALFCNVVKNAPNDENLNTTLGNIFKNIEKSSIGTGS 152

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL----HPDTVPDRVMSNIYEHLI 163
            DN K +F D D +S            K+ K    I              V  + YE+L+
Sbjct: 153 EDNVKGLFADLDVNSNKLGNSVDEKNKKLIKLLCAINSMQLGEIKQSGIDVFGDAYEYLM 212

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 213 AMYASNAGKSGGEFFTPQEVSQLLAKIALHGQESVNK--------VYDPCCGSGSLLLQC 264

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +       K   +   +GQE+   T+ +C   M +  ++         NI  G TL+
Sbjct: 265 AKVIG------KENVLKGFYGQEINLTTYNLCRINMFLHDIDYHK-----FNIAHGDTLT 313

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  + F   +SNPP+  KW  D D         E  R    L       + F MH+
Sbjct: 314 DPKHRDDEPFDAIVSNPPYSTKWVGDDDPTL---MGDERFRAAGKLAPKGSADLAFTMHM 370

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L    +  G  AIV     L+   A   E  IR +L+ +D ++ ++ LP++LFF T+
Sbjct: 371 LHSL----SNSGTCAIVEFPGVLYRSGA---EKTIREYLINHDYVDCVIQLPSNLFFGTS 423

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           IAT + +L   K   R  K   I+A+  +        K+  + +  R +IL  ++ RE  
Sbjct: 424 IATAILVLKKNK---RDDKTLFIDASAEFVK----SGKKNKLTEQNREKILQTWIQREEL 476

Query: 462 GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             FS ++             V R +      ++  +  L  +I  R++    Q     + 
Sbjct: 477 PHFSTLVSMEKIKDNDYNLSVNRYIETQEQKEEIDIQALNQEI--REIVKREQDVRERLD 534

Query: 520 KPMMQ 524
             + +
Sbjct: 535 SIITE 539


>gi|327384000|gb|AEA55475.1| type I restriction modification system protein [Lactobacillus casei
           LC2W]
 gi|327387192|gb|AEA58665.1| type I restriction modification system protein [Lactobacillus casei
           BD-II]
          Length = 538

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/574 (21%), Positives = 225/574 (39%), Gaps = 78/574 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
            V  KY  +     +LE                GY     + Y+            L+  
Sbjct: 61  NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 104 IASFSD------------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD 148
             +  D            +   +F D D SS        ++   +       + I+L   
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A   +    +RT
Sbjct: 181 --QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDNQ----VRT 234

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  +  D 
Sbjct: 235 IYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLMLHGVSYD- 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ G TLSKD    +   F   + NPP+   W    D  +K   +     +G 
Sbjct: 287 ----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRFRDYGV 338

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF    G+ E +IR+ LL ++ 
Sbjct: 339 -LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFR---GAKEGKIRQKLLMDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTGIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
              ++I+  Y +R++  K++ +    + +   Y  + + R +       +  L +++AD+
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDY-NLNIPRYVDTFEPEPEIDLNQVKADL 502

Query: 503 T--WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                ++S   Q+F     + +  Q+      E+
Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQVNDQSKPEA 536


>gi|25026813|ref|NP_736867.1| putative restriction enzyme subunit M [Corynebacterium efficiens
           YS-314]
 gi|259506125|ref|ZP_05749027.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
 gi|23492092|dbj|BAC17067.1| putative restriction enzyme subunit M [Corynebacterium efficiens
           YS-314]
 gi|259166299|gb|EEW50853.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
          Length = 800

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 203/581 (34%), Gaps = 50/581 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++  A+ L G  + + + + I     L+      E  +  V  +  + G S 
Sbjct: 5   TLPQLERHLFAAADVLRGSMEASAYKEYIFGMLFLKYASDQFEAEQQQVIAEQRSRGRSQ 64

Query: 67  IDLESFVKVAGY--SFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFEDF 118
            + E   +   +  +FY         +     +      N     +   + +   + +  
Sbjct: 65  AEAEQRAESPSFYRAFYVPQRARWDQIRDHLHKSVGSGLNKALEELEHSNRSLDGVLQHI 124

Query: 119 DFSSTIARLEKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAED 176
           DF+  I +   +    +    +F+ + L         ++   YE+LIR F     +   +
Sbjct: 125 DFNRKIGQSSMSDKKLRELIMHFNKVPLRQQDFEFPDLLGAAYEYLIRDFADSAGKKGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPRDVV L   +            P    ++YDP  G+GG L  +  +V + G   + 
Sbjct: 185 FYTPRDVVRLMVQIA----------DPRPGMSVYDPCTGSGGMLILSKEYVEESGGDGRN 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L   GQE +    A+    ML+  +     R+      +           +RF   +
Sbjct: 235 ---LALAGQEKDGSVWAISKMNMLLHGIPDADLRNNDDGTLEDPAHIA-GGELQRFDRVI 290

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF   +  D           E  R+G    K     ++F+ H+          GG  
Sbjct: 291 TNPPFSMNYSADAIP------FSERFRYGYTPEKGKKADLMFVQHMLA----VTRPGGLV 340

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS--NRK 414
             V+    LF    G  E +IR   L +DL+EA++ L   LF+ T I   + +L     K
Sbjct: 341 TTVMPHGVLFR---GGDEGKIRTGFLNDDLLEAVIGLGPQLFYGTGIPACILVLRPLGSK 397

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
            + R  KV  INA   +     EG+ +  +  +   +I+  Y + E+   F+R++     
Sbjct: 398 PQHREDKVLFINADRDY----REGRAQNYLEPEHIEKIVSAYRAFEDVPGFARVVSRGEL 453

Query: 474 GYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSP---LHQSFWLDILKPMMQQIY 527
                 + + R +  +   +   + A L   I   ++S    L  +  L     ++ +  
Sbjct: 454 AENEDNLNIRRYVETTPPPEPQDVRAHLHGGIPKSEVSAKAGLFAAHGLMPEHLLVAKSD 513

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            Y      V E                +         G  D
Sbjct: 514 DYLQFADVVTERRDLRRLIESDAGVVATESAVLDAIGGWWD 554


>gi|229550755|ref|ZP_04439480.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315866|gb|EEN81839.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
          Length = 540

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/574 (22%), Positives = 227/574 (39%), Gaps = 78/574 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
            V  KY  +     +LE                GY     + Y+            L+  
Sbjct: 61  NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 104 IASFSD------------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD 148
             +  D            +   +F D D SS        ++   +       + I+L   
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A   +    +RT
Sbjct: 181 --QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDNQ----VRT 234

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  +  D 
Sbjct: 235 IYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLMLHGVSYD- 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ G TLSKD    +   F   + NPP+   W    D  +K   +     +G 
Sbjct: 287 ----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRFRDYGV 338

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF    G+ E +IR+ LL ++ 
Sbjct: 339 -LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFR---GAKEGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
              ++I+  Y +R++  K++ +   ++ +   Y  + + R +       +  L +++AD+
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPVEIKENDY-NLNIPRYVDTFEPEPEIDLDQVKADL 502

Query: 503 T--WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                ++S   Q+F     + +  QI      E+
Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQINDQSKPEA 536


>gi|304569843|ref|NP_942538.2| hypothetical protein slr6095 [Synechocystis sp. PCC 6803]
          Length = 512

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 119/527 (22%), Positives = 208/527 (39%), Gaps = 63/527 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++K A+ L G    ++F + I     L+R     E     +    LA G S 
Sbjct: 5   TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRASDVFEQQYQQIIRDNLAKGRSE 64

Query: 67  IDLESFVKVA--GYSFYNTSEYSLSTLG---STNTRNNLESYIASFSDN---AKAIFEDF 118
            + +   + A     F+       +T+      N  N L   +A+  ++      +    
Sbjct: 65  EEAKQRAERASSYQDFFVPERARWATIRDELHDNVGNGLNKALAALEESNVALSGVLGHI 124

Query: 119 DFSSTIARLE-KAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF+  + +       L ++  +F+    L+ D V   ++   YE+LI  F     +   +
Sbjct: 125 DFNRKVGKTTLSDTKLRELIFHFNKYRLLNEDFVFPDLLGAAYEYLIAEFADSAGKKGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPRDVV L   L+           P    ++YDP  G+GG L  A  ++ +CG   + 
Sbjct: 185 FYTPRDVVQLMVRLV----------KPAAGMSIYDPCVGSGGMLIQAKQYIEECGGDSRN 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRF 292
              L   GQ+      A+C   ML+  ++          I+   TL           +RF
Sbjct: 235 ---LSLCGQDNNGGVWAICKINMLLHGIKD-------ARIENEDTLQNPRHIVDGELERF 284

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPP 350
              LSNPPF + +EK     +         RF  G    S     ++F  H+ + L++  
Sbjct: 285 DRVLSNPPFSQNYEKTNLEFK--------NRFNHGWCPESGKKADLMFAQHMLSVLKV-- 334

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG  A V+    LF    G  E +IR+ L+E D IEAI+ LP +LF+ T I   + ++
Sbjct: 335 --GGIVATVMPHGVLFR---GGDEQKIRKSLIEKDQIEAIIGLPPNLFYGTGIPACILVM 389

Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
                K  ERRGKV  INA   + + R     +  +  +   +I++ + +  +   ++ +
Sbjct: 390 RRAGEKLPERRGKVLFINADAEFYAGRA----QNYLKPEHIEKIVNAFEAFVDIPGYAAV 445

Query: 468 LDYRTFGYR----RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSP 509
           +               + R    +   +   + A L   I + ++  
Sbjct: 446 VSREILAAEENDFNCNIRRYADNAPPPEPQDVTAHLLGGIPFDEIEA 492


>gi|332535596|ref|ZP_08411364.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034980|gb|EGI71501.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
          Length = 506

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 206/536 (38%), Gaps = 41/536 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   +   +W   +   G    + +   IL    L+ +    +     + E+Y 
Sbjct: 1   MTNSQINQDEINKAVWAACDTFRGTVDPSTYKDFILTMLFLKYISDVYQDEYDKLLEQYG 60

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                   +   + FV   G SF++  E              L +   +     K +F+D
Sbjct: 61  DQPDLIHAMMAKQRFVLPKGASFWDLYEERHKAGNGQRIDQALHAIEEANGGKLKNVFQD 120

Query: 118 FDFSSTIARLE--KAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F++     E  K  +L  I ++F    + L P  V    ++ N YE+LI+ F +   +
Sbjct: 121 ISFNTDKLGQEKQKNDILRHILEDFGKEVLNLRPSRVGSLDIIGNAYEYLIKHFAASSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L  A+L           P     + DP CG+G  L      + +   
Sbjct: 181 SAGEFYTPPEVSDLLAAIL----------DPQEGDQICDPACGSGSLLMKCGRMIRN--- 227

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +          GQE    T A+    M +   E + R +    I+    L KD      F
Sbjct: 228 NFNGSKKYALFGQEAIGSTWALAKMNMFLHG-EDNHRIEWGDTIRHPMLLDKDGTGLLHF 286

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
               +NPPF       + A      N E GRF  G+P  + G   F+ H+   L+     
Sbjct: 287 DIVTANPPFSLDKWGFEGA-----DNDEFGRFRRGVPPKTKGDYAFISHMVETLK---PE 338

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR  +V+    LF G A   E +IR  L+E +L++A++ LP  LFF T I   + I   
Sbjct: 339 SGRMGVVVPHGVLFRGAA---EGKIRAQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKK 395

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           +KT+    K+  I+ +  + S +N    +  +  +  ++I+D Y +RE   K++ +    
Sbjct: 396 QKTD---NKILFIDGSREFKSGKN----QNQLTANNIQKIIDTYKARETVDKYAYLATLE 448

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                   +  P  +    ++  +  +       +L    ++  + +   + +  Y
Sbjct: 449 EIKENDFNLNIPRYVDTFEEEAEIDLVAVRTERLQLQNELKALEVKMEGYLKELDY 504


>gi|227533323|ref|ZP_03963372.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227189042|gb|EEI69109.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 538

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 126/576 (21%), Positives = 216/576 (37%), Gaps = 73/576 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
            V +KY  +     +LE                GY     + Y+            L+  
Sbjct: 61  NVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 104 IASFSD------------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD 148
             +  D            +   +F D D SS        ++   +       + I+L   
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+    +RT
Sbjct: 181 --QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRT 234

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  +  D 
Sbjct: 235 IYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLMLHGVSYD- 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ G TLSKD    +   F   + NPP+   W    D  +K   +     +G 
Sbjct: 287 ----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRFRDYGV 338

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF    G+ E +IR+ LL ++ 
Sbjct: 339 -LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFR---GAKEGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              ++I+  Y +R++  K++ +            +  P R     +      L       
Sbjct: 444 VNIQKIVTTYQNRQDVDKYAHVASPAEIKANDYNLNIP-RYVDTFEPEPEIDLNQVKADL 502

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           K      S    I   +  Q+      +    E+ K
Sbjct: 503 KQLDEEISQNEQIFNELASQLVTTQVNDQSKPEAHK 538


>gi|260102294|ref|ZP_05752531.1| type I restriction-modification system [Lactobacillus helveticus
           DSM 20075]
 gi|260083891|gb|EEW68011.1| type I restriction-modification system [Lactobacillus helveticus
           DSM 20075]
          Length = 540

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 129/574 (22%), Positives = 230/574 (40%), Gaps = 78/574 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54
           M+E T  A+ L + +W  A+ L G    +++   +L     R L      T S       
Sbjct: 1   MSEKTMQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSEWAGETE 60

Query: 55  -VREKYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
            V +KY  +     +LE                GY     + Y+            L+  
Sbjct: 61  NVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIKPQALYTTLIGKIQAHTFALDDL 120

Query: 104 IASFSD------------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD 148
             +  D            +   +F D D SS        ++   +       + I+L   
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+    +RT
Sbjct: 181 --QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRT 234

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  +  D 
Sbjct: 235 IYDPAVGSGSLLLNVGQHVQD-------PNLVSYHGQELNTTTYNLARMNLMLHGVSYD- 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ G TLSKD    +   F   + NPP+   W    D  +K   +     +G 
Sbjct: 287 ----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRFRDYGV 338

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF    G+ E +IR+ LL ++ 
Sbjct: 339 -LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFR---GAKEGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDNVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
              ++I+  Y +R++  K++ +    + +   Y  + + R +       +  L +++AD+
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDY-NLNIPRYVDTFEPEPEIDLNQVKADL 502

Query: 503 T--WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                ++S   Q+F     + +  Q+      E+
Sbjct: 503 KQLDEEISQNEQAFNELASQLVATQVNDQSKPEA 536


>gi|84489290|ref|YP_447522.1| putative type I restriction-modification system, methyltransferase
           subunit [Methanosphaera stadtmanae DSM 3091]
 gi|84372609|gb|ABC56879.1| putative type I restriction-modification system, methyltransferase
           subunit [Methanosphaera stadtmanae DSM 3091]
          Length = 508

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 119/538 (22%), Positives = 216/538 (40%), Gaps = 66/538 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------YL 60
           ++    +W  A+ L G+    +F   +L F   R L   LE T + + E+        Y 
Sbjct: 2   SNYETKLWAIADKLRGNMDANEFKNYMLGFIFYRYLSEKLEMTLNELLEEDGINFQEAYQ 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYS------------LSTLGSTNTRNNLESYIASFS 108
                    E  ++  GY       +S            L  L +     N  S+     
Sbjct: 62  DEELIEDLKEEGIEKLGYFIQPKYLFSSVINEIDKGREILECLSNAFIEINDSSFNTESQ 121

Query: 109 DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           D+ + +FED D +S+       EK  L+  I ++ S I+   +     ++ + YE+LI +
Sbjct: 122 DDFQNLFEDVDLNSSKLGNTNAEKNKLISGILQDISDIDFELEKDNSDILGDAYEYLISQ 181

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP++V  +   ++      L        +++YDPTCG+G  L     
Sbjct: 182 FASSAGKKAGEFYTPQEVSTILARIVTLNKTRL--------KSVYDPTCGSGSLLLRVSK 233

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                        +   +GQEL   T+ +    M++  ++ +       NI+QG +L  D
Sbjct: 234 EA----------DVSEFYGQELNQTTYNLARMNMILHGVKYN-----HFNIKQGDSLEND 278

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F   ++NPPF  KW  DK  +  E  +G        L   S     F+ H+   
Sbjct: 279 RHEELKFDAVVANPPFSAKWSSDKSFINDERFSGYGK-----LAPKSKADYAFVQHMIYH 333

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIA 404
           L    N  G  A+VL    LF G A   E  IR++L++  + ++A++ LP ++F+ T+I 
Sbjct: 334 L----NEQGTLAVVLPHGVLFRGAA---EGTIRKYLIKELNYLDAVIGLPKNIFYGTSIP 386

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
           T + +   +K  E    +  I+A++ +   +N    +  +  +   +I+  Y +RE   K
Sbjct: 387 TCILVF--KKCREEDDNILFIDASEYYEKAKN----QNKLRPEDIEKIVTTYKNREEIEK 440

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
           +S              +  P  +    ++  +   E     RK+    +     I+K 
Sbjct: 441 YSHKATIEEIEENDYNLNIPRYVDTFEEEEPIDLDEVVREIRKIDEEMKEVDAKIIKY 498


>gi|89098145|ref|ZP_01171030.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL
           B-14911]
 gi|89087002|gb|EAR66118.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL
           B-14911]
          Length = 497

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 113/524 (21%), Positives = 218/524 (41%), Gaps = 55/524 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK+A+ L G    +D+   I     L+RL    E  ++ + +++    G  
Sbjct: 5   TLQELESHLWKSADILRGSVDSSDYKNYIFGLLFLKRLSDVSEERKNNLIKEHGEEIGIL 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFS 121
           +  +       Y F+         +           N     + + +   + +    DF+
Sbjct: 65  LADD----PDQYQFFVPENAKWEEIRKHAEDIGSAINVAFEVLENENATLEGVLTPIDFN 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 +   +L ++ ++FS + L  + + +  ++   YE+LI+ F  +  +   +F TP
Sbjct: 121 RKEVLTDS--VLQRLLQHFSLLILTNENLSEPDMLGRAYEYLIKMFADDAGKKGGEFYTP 178

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             VV L   L+           P     +YDPTCG+GG L  ++++V   G +   P  L
Sbjct: 179 SKVVELIVKLI----------KPEEGMRVYDPTCGSGGMLIQSVDYVKHKGGN---PQTL 225

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296
              GQE    T ++    +L+  L           I++G T+ +           F   +
Sbjct: 226 SLFGQEKNLGTWSIAKMNLLLHGL-------PDHRIEKGDTIRQPKLVEDGEIMLFDRVI 278

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K    +     E ++   GRF  GLP  + G   F+ H+   L+      G A
Sbjct: 279 ANPPFSLKEWGRE-----EAEHDSYGRFQHGLPPKNAGDYAFIQHMVASLK----SNGMA 329

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G A   E  IR+ LLE+DL+EA+V LP++LF+ T I   + I +  K  
Sbjct: 330 GVVMPHGVLFRGGA---EGRIRQGLLESDLLEAVVGLPSNLFYGTGIPACILIFNRDKEA 386

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYR--TF 473
           ER G V  I     + + +N    +  + +    +++  + + +   K++R++       
Sbjct: 387 ERNGNVLFIAGESEFKAGKN----QNALREQDIEKMVATFDAYQYVEKYARVVSLEEIRN 442

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               + + R +  S   ++  L+ + ++I   ++        L+
Sbjct: 443 NDYNLNITRYIDKSIEEEQIDLSAVLSEIKEIEVKHSRNKETLN 486


>gi|291515049|emb|CBK64259.1| Type I restriction-modification system methyltransferase subunit
           [Alistipes shahii WAL 8301]
          Length = 517

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 103/482 (21%), Positives = 181/482 (37%), Gaps = 61/482 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IWK A+ + G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MAAMNTADIGFEKEIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFEAKYQQLVAEGE 60

Query: 61  AFGGSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            F     +  S     G     FY  +E     +            I +  DNA    E 
Sbjct: 61  GFEEDKDEYLSNKNEKGSYDPVFYVPAEARWEAIAIHAH----SPEIGTIIDNAMRAIEK 116

Query: 118 FD------FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +           AR E     L ++   F+ I +H       ++   YE+ + +F    
Sbjct: 117 ENKRLKDILPKNFARPELDKRRLGEVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAE 176

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP  +V     +L           P     +YDP CG+GG    +   + + 
Sbjct: 177 GKLAGEFYTPACIVKTLVNVL----------QPYKG-RVYDPCCGSGGMFVQSAQFIEN- 224

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H      +  +GQ+  P T  +    + IR +E+D             T   D     
Sbjct: 225 --HSGNINNISVYGQDSNPTTWKMAQMNLAIRGIEAD------LGQYNADTFFNDCHPTL 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + ++NPPF           +         R+  G P   + +  ++ H+ + L    
Sbjct: 277 KADFVMANPPFNLSDWGADKLADDV-------RWKYGTPPNGNANFAWIQHIIHHL---- 325

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRA +VL++  L +     GE EIRR L+E DL++ ++A+P  LF+ T I   +W  
Sbjct: 326 APTGRAGVVLANGSLSSQS--GGEGEIRRKLVEADLVDCVIAMPPQLFYTTQIPVSIWFF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD---------QRRQILDIYVSREN 461
           +  K  +++GK   I+A +L T +    +K R + D            ++I D Y +   
Sbjct: 384 NKNK--QQKGKTLFIDARNLGTMV---TRKLRELTDSDTVDPIKRGDIQRIADTYNAYVA 438

Query: 462 GK 463
           GK
Sbjct: 439 GK 440


>gi|88811760|ref|ZP_01127014.1| type I restriction system adenine methylase [Nitrococcus mobilis
           Nb-231]
 gi|88791151|gb|EAR22264.1| type I restriction system adenine methylase [Nitrococcus mobilis
           Nb-231]
          Length = 522

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 114/546 (20%), Positives = 214/546 (39%), Gaps = 67/546 (12%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
            + +G+  +L   + +W  A+ L G+ + +D+  V L    L+ +  A E  R A+  + 
Sbjct: 15  AQKSGNGGNLGFESMLWAAADKLRGNMEPSDYKHVALGLIFLKYISDAFEVKREALLAED 74

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
           LA      D E ++  A   F+   E   S L +   +       ++    I + + + K
Sbjct: 75  LA---DPEDPEEYL--AENVFWVPKEARWSHLQANAKQATIGKLVDDAMLAIEAKNASLK 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVS 171
            +         + ++    +L ++    SGI +  D      ++  +YE+ +  F     
Sbjct: 130 GVLPKDYARPALNKV----MLGELIDLISGIGMGEDADRSKDILGRVYEYFLGGFAGAEG 185

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV L   +L           P     +YDP CG+GG    +   V + G
Sbjct: 186 KRGGEFYTPRSVVQLLVEML----------EPYKG-RVYDPCCGSGGMFVQSERFVEEHG 234

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +C   + +R +++D R +         +  KD     R
Sbjct: 235 GRIG---DIAIYGQESNYTTWRLCKMNLAVRGIDADIRWNNEG------SFHKDELKDLR 285

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +       +  E  R+  G+P   + +  +L H+ + L     
Sbjct: 286 ADYVLANPPFNISDWGGE-------RLREDARWKYGVPPAGNANYAWLQHIYHHL----A 334

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL+   + + +  SGE +IRR L+E D+++ ++ LP  LF+   I   LW L+
Sbjct: 335 PDGSAGVVLAKGSMSSTQ--SGEGDIRRSLVEGDVVDCMIDLPGQLFYSVQIPACLWFLA 392

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR------- 459
             K       +RRG++  I+A  L   +    + R+  +++   +I   Y S        
Sbjct: 393 RNKNPGNRWRDRRGEILFIDARKLGQMV---DRTRKEFSEEDIAKIAGSYHSWRGAGPYE 449

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +   F + +           +     +    ++      E      K     Q    + L
Sbjct: 450 DVPGFCKAVTLDEIREHSHILTPGRYVGAAAEEADNLSFEEQFADLKEILAEQFAHAEEL 509

Query: 520 KPMMQQ 525
             ++QQ
Sbjct: 510 SALIQQ 515


>gi|121595902|ref|YP_987798.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607982|gb|ABM43722.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 500

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 122/520 (23%), Positives = 207/520 (39%), Gaps = 57/520 (10%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+   T + + L + +W++A  L G     DF   I P    +R+    +     + ++
Sbjct: 1   MTQAASTITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAI 114
                  +  L  F +   +       ++     ++N    L+  +        D    +
Sbjct: 61  -----TGDEQLAWFPESHRFQIPEDCHWNDVRTKASNVGTALQRAMREIEKANPDTLYGV 115

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A
Sbjct: 116 FGDAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNKKA 173

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     
Sbjct: 174 GEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEQHGDV 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           K       +GQE    T ++    + +  +E          + +G TL    F       
Sbjct: 224 KRLWG-KLYGQEKNLTTSSIARMNLFLHGIED-------FQVVRGDTLRNPAFFEVDRLA 275

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPPF  +        E    N   GR   GLP  S G   ++ H+   +    
Sbjct: 276 TFDCVIANPPFSLEKWG-----EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---A 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  GR A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L
Sbjct: 328 DVSGRMAVVLPQGALFR---KGVEGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACILVL 384

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLD 469
             RK  + + KV + +A+ L+   R     +  +  +   +IL  Y    +     R++ 
Sbjct: 385 RKRKPVKHKKKVLIADASRLFRRGRA----QNYLEPEHAAEILGWYRGFADVQDTVRVVS 440

Query: 470 YRTFGYRRIK------VLRPLRMSFILDKTGLARLEADIT 503
                           VL PL+         +A  +  +T
Sbjct: 441 LDEIKAEDWTLNISRYVLPPLQEDIPPLPDAIAAFKDALT 480


>gi|284052297|ref|ZP_06382507.1| Type I site-specific deoxyribonuclease HsdM [Arthrospira platensis
           str. Paraca]
 gi|78773875|gb|ABB51224.1| type I RM system M subunit [Arthrospira platensis]
 gi|291569503|dbj|BAI91775.1| type I site-specific methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 513

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 124/530 (23%), Positives = 208/530 (39%), Gaps = 66/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT  T   A+L   IW+ A D+ G     DF + +L     R +        E     + 
Sbjct: 1   MT-STQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGDDDGID 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      D +         F   S+   +   S NT  +L + +A+          
Sbjct: 60  YAKLSDSDIPDDFKDDAIKTKGYFIYPSQLFATIAASANTNESLNTDLAAIFAAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  +G++    D     +  + Y
Sbjct: 120 GYPSEPDIKGLFADFDTTSNRLGNTVKDKNLRLAAVLKGLAGLDFGGFDASHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQQVSRLIAQLAMHQQTSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  D             +GQE+    + +    M +  +  +       NIQ G
Sbjct: 232 LLQAKKHFDDHRIEEG------FYGQEINHTNYNLARMNMFLHNINYNK-----FNIQLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL+   F  ++ F   +SNPP+  KW                 RF P   L   S    
Sbjct: 281 NTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDHPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E++IR++L++N+ +E ++AL  +
Sbjct: 336 AFVLHCLSYL----SSSGRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  K +      Q I A+ L+    N       + DD   +I+ ++
Sbjct: 389 LFFGTTIAVTVLVLSKDKPDST---TQFIYASGLFKKETN----NNTLTDDHIAEIMGVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            S+EN   F+R + +           V   +      +K  + +L A++ 
Sbjct: 442 DSKENVDHFARSVPFEEIAANDYNLSVSSYVEAKDTREKVDITQLNAELK 491


>gi|87310398|ref|ZP_01092528.1| type I restriction system adenine methylase [Blastopirellula marina
           DSM 3645]
 gi|87286897|gb|EAQ78801.1| type I restriction system adenine methylase [Blastopirellula marina
           DSM 3645]
          Length = 526

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 182/461 (39%), Gaps = 55/461 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W  A+ +  +    ++  V+L    L+ +  A E  R  +      + G++ +  
Sbjct: 19  FESKLWLAADKMRNNMDAAEYKHVVLGLIFLKYISDAFEEMRQKLLAGEGDYAGADPEEP 78

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
              + A   F+  +      L     +       ++    I   +   K +    DF+  
Sbjct: 79  DEYR-AENCFWVPTAARWQLLQDNAKQPTIGKLIDDAMVAIERDNPRLKGVLPK-DFARP 136

Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                    L ++      I L   +     ++  +YE+ +  F S   +    F TPR 
Sbjct: 137 AL---DKQRLGELIDLIGTIGLGDAENRSKDILGRVYEYFLSEFASAEGKKGGQFYTPRC 193

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV +   +L                 +YDP CG+ G    +   V + G        +  
Sbjct: 194 VVRVLVEMLAPGKG-----------RIYDPCCGSAGMFVQSEKFVEEHGGRIG---DIAV 239

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  + +  + IR +E D         +   T  +DL    +  + L+NPPF 
Sbjct: 240 YGQESNPTTRRLALMNLAIRGIEGDI------GPENADTFRRDLHKDLKADFVLANPPFN 293

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                        H+N +  R+  G+P   + +  ++ H  + L      GG A  VL++
Sbjct: 294 DSDW---------HRNDDDVRWAYGVPPKGNANYAWVQHFIHHL----APGGFAGFVLAN 340

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----R 418
             + + +  SGE EIR+ ++E DL++ +VALP  LF+ T I   LW L+  K ++    R
Sbjct: 341 GSMSSNQ--SGEGEIRKAIVEADLVDCMVALPGQLFYSTQIPVCLWFLTRGKKDKSRRNR 398

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            G+   I+A  L   I    +  R + D++ ++I D Y + 
Sbjct: 399 VGETLFIDARKLGVLI---DRVHRELTDEELQRIADTYHAW 436


>gi|325913365|ref|ZP_08175732.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 60-B]
 gi|325477291|gb|EGC80436.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 60-B]
          Length = 502

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 107/528 (20%), Positives = 205/528 (38%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +    F+   E    T+             +N    I S +   K 
Sbjct: 59  ---GDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +    +
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIR---A 218

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 219 HSGNCGSISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I++LP  LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALSSQS--CGEGEIRQKIIEDDLIEGIISLPPKLFYSVQIPVTLWFISQ 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A  +   +    +K R  +++  +++ D + + +NG       F  
Sbjct: 380 NK--KQKGKTVFIDARKMGHMV---DRKHRDFSEEDIQKLADTFEAFQNGTLEDEKGFCS 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   +    +   VL P R   I ++        +   R  S L   F
Sbjct: 435 VATIQDIAKQDY-VLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSDMF 481


>gi|259501399|ref|ZP_05744301.1| type I restriction-modification system [Lactobacillus iners DSM
           13335]
 gi|259167148|gb|EEW51643.1| type I restriction-modification system [Lactobacillus iners DSM
           13335]
          Length = 502

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 104/528 (19%), Positives = 203/528 (38%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++  +   + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLDK----QVLGDVVDIFTNRIDMSDNKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L       GE EIR+ ++E+DLIE I++LP  LF+  +I   LW +S 
Sbjct: 322 NGKIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A  +   +    +K R   ++  +++ D + + +NG       F  
Sbjct: 380 NK--KQKGKTVFIDARKMGHMV---DRKHRDFTEEDIQKLADTFEAFQNGTLEDEKGFCS 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   +    +   VL P R   I ++        +   +  S L   F
Sbjct: 435 VATIQDIAKQDY-VLTPGRYVGIEEQEDDGEPFDEKMTKLTSELSDMF 481


>gi|261417779|ref|YP_003251461.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|319767408|ref|YP_004132909.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|261374236|gb|ACX76979.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|317112274|gb|ADU94766.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 497

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 189/461 (40%), Gaps = 55/461 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A+ L  +    ++  V+L    L+ +    +     + ++       +   +
Sbjct: 6   FEEKLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKE-----DPDFAED 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGS-------TNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +A   F+       S +             +     I   +D+ K +         
Sbjct: 61  RDAYMADGVFWVPETARWSYIAERSKSPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPE 120

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           + +     +L +I   FS I++      +  V+  +YE+ + +F +   +G  +F TP+ 
Sbjct: 121 LDK----RILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKC 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   ++           P     +YDP CG+GG    +M  V +   H      +  
Sbjct: 177 VVKLMVEMI----------QPFKGY-VYDPACGSGGMFVQSMKFVEE---HAGNKFDISI 222

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    + IR +E+      +   +   T  +DL    +  Y L+NPPF 
Sbjct: 223 YGQESNPTTWKLAKMNLAIRGIEN------NLGPKHADTFHEDLHPTLKADYILANPPFN 276

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                    ++         R+  G+P   + +  +L H+ +KL    +  G+AA+VL++
Sbjct: 277 DSDWGQPKLIDD-------PRWKFGIPPAGNANYAWLQHMIDKL----SQNGKAAVVLAN 325

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L      SGE EIR+ ++  DL++AI+ALP  LF+ T I   +WIL+  K   R  K 
Sbjct: 326 GSL--SSMTSGEGEIRKNIVNADLVDAIIALPDKLFYTTQIPVCIWILNRNKKHPR--KT 381

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             I+A      +    +K R + D+  R+I D Y++ +N +
Sbjct: 382 LFIDARKFGQLV---TRKLRELTDEDIRKIADTYINWQNNE 419


>gi|88604024|ref|YP_504202.1| N-6 DNA methylase [Methanospirillum hungatei JF-1]
 gi|88189486|gb|ABD42483.1| N-6 DNA methylase [Methanospirillum hungatei JF-1]
          Length = 532

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 183/479 (38%), Gaps = 62/479 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E T +       +W  A+ L  +    ++  V+L    L+ L  A E   S++ + Y   
Sbjct: 9   ETTAANLGFEATLWAAADKLRNNMDAAEYKHVVLGLIFLKYLSDAFEEKHSSLEQAYSDP 68

Query: 63  GGSNIDLESFVKV----------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             +    E  V+           +   F+   E   S +     R      I    D+A 
Sbjct: 69  QSTWYIAEPEVRYGVIEDPDEYRSENIFWIPKEARWSYIQQNAKRPE----IGKIVDDAM 124

Query: 113 AIFEDFD--FSSTIARLE-----KAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164
              E  +    + + +           L ++      + L   +     ++  +YE+ + 
Sbjct: 125 YAIERDNAVLKNILPKEYARPGLDKEKLGELIDLIGTLNLSDSENRSKDIIGRVYEYFLS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S   +    F TPR VV    A++                 +YDP CG+GG    + 
Sbjct: 185 EFASAEGKNGGQFYTPRCVVQTLVAMISPFKG-----------RVYDPCCGSGGMFVQSE 233

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             V   G        +  +GQE  P T  +    + IR ++ D         +   +  +
Sbjct: 234 KFVEAHGGRIG---DISIYGQESNPTTWKLAKMNLAIRGIDHD------LGAEHADSFRR 284

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL    +  Y L+NPPF  K    ++  +         R+  G+P   + +  ++ H  +
Sbjct: 285 DLHATLKADYILANPPFNMKDWGGENLKDDV-------RWRYGIPPTGNANYAWIQHFIH 337

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L    +  G A  VL++  + + +  SGE EIR+ LLE DL++ +VALP  LF+ T I 
Sbjct: 338 HL----SPSGIAGFVLANGSMSSNQ--SGEGEIRKNLLEADLVDCMVALPGQLFYSTQIP 391

Query: 405 TYLWIL----SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             LW +    SN +  +RRG+V  I+A  +        +  R + D+   +I   Y + 
Sbjct: 392 ACLWFVARNRSNGRFRDRRGEVLFIDARKMGVM---RDRTHRELTDEDIERIAGTYHAW 447


>gi|226225587|ref|YP_002759693.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
 gi|226088778|dbj|BAH37223.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
          Length = 519

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 113/526 (21%), Positives = 197/526 (37%), Gaps = 67/526 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T +       +W  A+ L  +    ++  V+L    L+ +  A E  + A      A G 
Sbjct: 13  TSANIGFEAKLWAAADALRNNMDAAEYKHVVLGLIFLKYISDAFE-IKHAELASQHADGA 71

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFED 117
              D + +   A   F+  +E     L +   +       ++  + I   + + K +   
Sbjct: 72  DPEDPDEYR--ADNIFWVPAEARWQFLKANAPQPGVGTMVDDAMAAIERDNPSLKGVLPK 129

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                 + +      L +I    S IEL          +  +YE+ + RF S   +    
Sbjct: 130 DYARPGLDK----QRLGQIINLVSDIELGSSADKSKDTLGRVYEYFLSRFASAEGKSGGQ 185

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV +   +L                 +YDP CG+GG    +   +    +H   
Sbjct: 186 FYTPSYVVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIE---AHAGK 231

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQE    T  +    + IR +++            G TL  D     +  Y L
Sbjct: 232 LDDISIYGQESNYTTWRLAKMNLAIRGIDAQIG--------HGDTLHDDKHPDLKADYVL 283

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF     + +   +         R+  G P   + +  ++ H  + L    +  G A
Sbjct: 284 ANPPFNDSDWRGELLKDD-------QRWAYGAPPAGNANFAWVQHFIHHL----SPTGLA 332

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-- 414
             VL++  + + +  SGE EIR+ ++E DL++ +VALP  LF+ T I   LW L+  K  
Sbjct: 333 GFVLANGSMSSNQ--SGEGEIRKTIVEADLVDCMVALPGQLFYSTQIPVCLWFLARNKRN 390

Query: 415 --TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENGKFSRML 468
               +RRG V  I+A  L +      + RR + D     I D Y +     + G+++ + 
Sbjct: 391 GRFRDRRGHVLFIDARKLGSMA---DRVRRELTDADIANIADTYHAWRGDKDAGEYADVA 447

Query: 469 DYRTFGYRRIK-----VLRPLRMSFILDKTGLARLEADITWRKLSP 509
            +    Y         VL P R     D         ++  R+LS 
Sbjct: 448 GFCKSVYIDEIRQHGHVLTPGRYVGAEDIEDDGEP-FELKMRRLSA 492


>gi|15839331|ref|NP_300019.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9107980|gb|AAF85527.1|AE004080_9 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 519

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/473 (21%), Positives = 193/473 (40%), Gaps = 60/473 (12%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           T   G+  +L     ++K A+ L G+ + +D+  V L    L+ +  A E   SA+  + 
Sbjct: 7   TTKNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHSALLAED 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
                   +      +A   F+   +   S L +   +       +     I   + + K
Sbjct: 67  AQAAEDKDEY-----LAHNVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEKDNPSLK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVS 171
            +         + ++    +L ++    SGI L+ +      ++  +YE+ + +F     
Sbjct: 122 HVLPKDYARPALNKV----MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQFAGAEG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV +   +L           P     +YDP CG+GG    +   V + G
Sbjct: 178 KRGGEFYTPRSVVRVLVQML----------EPYSG-RVYDPCCGSGGMFVQSEKFVLEHG 226

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + +R ++SD R +         +   D     +
Sbjct: 227 GRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIRWNNEG------SFHNDALRDLK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF               +  E  R+  G+P   + +  +L H+ + L     
Sbjct: 278 ADYILANPPFNISDWGG-------DRLREDVRWKFGVPPAGNANYAWLQHIYHHL----A 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL++  + +    SGE EIR  ++E D+++ ++A+P  LF+ T I   LW L+
Sbjct: 327 PNGTAGVVLANGSMSSNH--SGEGEIRTHMIEADIVDCMIAMPGQLFYSTQIPACLWFLA 384

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             K       +RRG+V L++A  L   +    + RR + D+  +QI D Y + 
Sbjct: 385 RNKNPGKGLRDRRGQVLLMDARALGVLV---DRTRRELTDEHIQQIADTYHAW 434


>gi|311063620|ref|YP_003970345.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
 gi|310865939|gb|ADP35308.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 520

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 124/538 (23%), Positives = 203/538 (37%), Gaps = 73/538 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------ALEPTRS 53
           MT      A L   IW  A  L G     DF + +L F   R +           E    
Sbjct: 1   MTNSGTQRAELHKTIWSIANVLRGSVDGWDFKQYVLGFLFYRFISEDITSYLNEYEHQAG 60

Query: 54  AVREKYLAFGGSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            V   Y     +  +      V+  GY F   S+   +     +   NL   +     N 
Sbjct: 61  DVDFDYAKLDDATAEQVRKSMVEEKGY-FILPSDLFANVRRCADADENLNETLQRVFKNI 119

Query: 112 -------------KAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD--- 152
                        + +F+D D +S       +++   L K+      ++L  ++  D   
Sbjct: 120 EGSAIGSRSESSLRGLFDDLDLNSRKLGDTVVDRNAKLVKVLNAIGDLDLGTESFADNKI 179

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + +   +   +F TP++V  L T +       + K        +YDP
Sbjct: 180 DAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIATHGKSEVNK--------VYDP 231

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  ++  +                GQE    T+ +C   M +  +  D     
Sbjct: 232 ACGSGSLLLQSIKVLGKDKVRQG------FFGQEKNLTTYNLCRINMFLHDVNYD----- 280

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             NI  G TL        + F   +SNPP+  KWE D +            RF P   L 
Sbjct: 281 HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPTLIND-----PRFAPAGVLA 335

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F MH+ + L       G AAIV     L+    G  E +IR++LLE + I+A
Sbjct: 336 PKSKADLAFTMHMLSWLAA----DGTAAIVEFPGVLYR---GGKEQKIRKYLLEGNFIDA 388

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF T+IAT + +L   K ++    V  I+A++ +  + N    +  ++ D  
Sbjct: 389 VIQLPPNLFFGTSIATCIIVLKKSKNDD---SVLFIDASERFVHVGN----QNQLSPDDI 441

Query: 450 RQILDIYVSRE-NGKFSRMLDYRTFGYRR--IKVLRPLRMSFILDKTGLARLEADITW 504
             I+D YV RE    FS +            + V   ++     +K  +A L   I+ 
Sbjct: 442 AAIMDAYVKREPVEHFSAVASLEDIRKNDYVLSVSSYVQPKDTREKIDIAALNRQISD 499


>gi|297562021|ref|YP_003680995.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846469|gb|ADH68489.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 549

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/551 (21%), Positives = 213/551 (38%), Gaps = 81/551 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-SN 66
           +  L + +WK A+ L G     ++   +L    L+ +  A    R  + ++    GG S 
Sbjct: 15  SKDLKDTLWKAADKLRGSMDAAEYKHFVLGLIFLKYVSDAFAERRVHIEKELREEGGYSE 74

Query: 67  ID----LESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-- 119
            D    LE   +  GY  +   +      +         E  +    D+A     + +  
Sbjct: 75  TDIAETLEDREEYIGYGVFWVPQAARWEAIAERAKTGAGEDGVGKLLDDAMKAVANTNPS 134

Query: 120 FSSTI------ARLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRRF 166
             +++      AR      L ++    + I       PD        V+  +YE+ + +F
Sbjct: 135 LRNSLPQGLFNARGVDERRLGELVDLINRIGFGDQLDPDGNRRSARDVLGEVYEYCLGKF 194

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                    ++ TP  VV L  A+L           P     +YDP CG+GG    A   
Sbjct: 195 ALAEGRRGGEYYTPACVVELIVAML----------EPQKGERVYDPACGSGGMFVQAEKF 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   G + +    +  +GQEL   T  +    + I  + +D         +   T   D 
Sbjct: 245 VESHGGNAR---DIAVYGQELNQNTWRLAKMNLAIHGISAD------LGTKWDDTFHNDH 295

Query: 287 FTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               R H  ++NPPF    W  D+  ++         R+  G+P + + +  +L H+A K
Sbjct: 296 HPDLRAHVVMANPPFNISDWGGDRLVMD--------PRWQWGVPPVGNANYAWLQHMAYK 347

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       GRA IVL++  + + +  SGE +IRR ++E+ L+  +VALP  LF  T I  
Sbjct: 348 L---APKAGRAGIVLANGSMSSKQ--SGEGDIRRAMVEDGLVACMVALPGQLFRSTQIPA 402

Query: 406 YLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            +WIL+  +         +R G+V  I+A +L   +    K+   + +D+ +QI + + +
Sbjct: 403 CVWILAKDRGAKGGRGSIDRTGQVLFIDARELGEMVTRTEKQ---LTEDEIKQISNTFHA 459

Query: 459 R--------------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
                          + G F + +           +L P R  ++         +A+   
Sbjct: 460 WLGTSSAKRNGLTYEDIGGFCKSVSLDEIREHDF-ILTPGR--YVGAAEVEEDPDAEPLD 516

Query: 505 RKLSPLHQSFW 515
            K++ L +  +
Sbjct: 517 EKVARLQKELF 527


>gi|83590508|ref|YP_430517.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073]
 gi|83573422|gb|ABC19974.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073]
          Length = 516

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 123/550 (22%), Positives = 224/550 (40%), Gaps = 52/550 (9%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58
           MTE T    ++L N++W+ A  + G      +   ILP   L+RL    E   + + E+ 
Sbjct: 1   MTENTNMDLSTLENWLWEAACVIRGAVDAPKYKDYILPLIFLKRLSDVFEDEIARLAEEI 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDNAKAIF 115
           + +   +   +E    +  +     + +   +  +TN    L S    +A  +     IF
Sbjct: 61  FDSIEEALKQVEEDHALVRFYIPPQARWDAISRQTTNIGEYLTSAVRAVARENPKLHGIF 120

Query: 116 EDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           E+ DF++ +A         LY + +  S   L    V   ++   YE+L+R+F     + 
Sbjct: 121 ENIDFNAQMAGQPVIDNDRLYNLIQVLSRHRLGLKDVEVDILGRAYEYLLRKFAEGQGQS 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TPR+V  L   LL           P     +YDP CG+GG L  ++  + +    
Sbjct: 181 AGEFYTPREVTWLMAYLL----------EPRPGDEIYDPACGSGGLLIKSVLALKETYGD 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
                 +  +GQE+   T A+      I  LE+D         + G T+++  FT     
Sbjct: 231 DPRIAPVKIYGQEILYTTFAMAKMNAFIHDLEADI--------RLGDTMARPAFTNPDGS 282

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLE 347
            + F    +NP + +K+          ++     RF   G+P  S     ++ H+   L+
Sbjct: 283 LRTFDKVTANPMWNQKFP------LPLYEEDPFDRFKFGGIPPASSADWGWIQHMFASLK 336

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                GG+ A+VL +  +  G    G   E +IR+  +ENDL+E ++ LP ++F+ T   
Sbjct: 337 ----EGGKMAVVLDTGSVSRGSGNQGSNRERDIRKVFVENDLVECVILLPENMFYNTTAP 392

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGK 463
             + +++  K      ++ LINA+ L+T  R +      + D+  +Q+  IY   RE   
Sbjct: 393 GIIMVINKAKKHPA--EILLINASKLFTKGRPK----NYMEDEHIKQVYSIYREWREEEG 446

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            S+++           +  P R   I  K     +E  +         +      L  ++
Sbjct: 447 LSKIIPVEEAARNDYNLS-PSRYVSINGKEEYRPIEEILVELAEVEEERQAVDKELNDIL 505

Query: 524 QQIYPYGWAE 533
            ++   GW  
Sbjct: 506 GKLGFGGWLN 515


>gi|302878446|ref|YP_003847010.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302581235|gb|ADL55246.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 516

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/471 (22%), Positives = 192/471 (40%), Gaps = 58/471 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T   G        ++K A+ L G+ + +D+  V L    L+ +  A E    A+ E+   
Sbjct: 6   TNKNGGNLGFEAEMFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLEEDPQ 65

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                 +      +A   F+   +   S L +           ++    I   +++ K +
Sbjct: 66  AAEDKDEY-----LADNVFWVPKDARWSHLQANAKLPTIGTLIDDAMRAIEKDNESLKGV 120

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+ +      ++  +YE+ + +F     + 
Sbjct: 121 LPKDYARPALNKV----MLGELIDLISGIALNEEGHASRDILGRVYEYFLGQFAGAEGKR 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   +L                 +YDP CG+GG    +   V + G  
Sbjct: 177 GGEFYTPRSVVRVLVEMLEPYQG-----------RIYDPCCGSGGMFVQSEKFVQEHGGR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R ++SD R +         +  KD     +  
Sbjct: 226 IG---DIAIYGQESNYVTWRLAKMNLAVRGIDSDIRWNNEG------SFHKDELRDLKAD 276

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               +  E  R+  G P + + +  +L H+ + L       
Sbjct: 277 YILANPPFNISDWGG-------DRLREDVRWKFGAPPVGNANYAWLQHIVHHL----APN 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + +  SGE +IRR ++E D+++ +VALP  LF+ T I   LW L+  
Sbjct: 326 GTAGVVLANGSMSSTQ--SGEGDIRREMVEKDILDCMVALPGQLFYSTQIPACLWFLARN 383

Query: 414 KT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           K       +RRG+V  I+A  L   +    + RR ++D   ++I D Y + 
Sbjct: 384 KNPGNGWRDRRGEVLFIDARKLGVLV---DRTRRELSDADVQKIADTYHAW 431


>gi|21674693|ref|NP_662758.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
 gi|21647900|gb|AAM73100.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
          Length = 518

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 124/557 (22%), Positives = 216/557 (38%), Gaps = 68/557 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E     +R
Sbjct: 1   MT-SIQQRAELQRRIWQIANDVRGTVDGWDFKQYVLGALFYRFISENFAAHMEAGDDGIR 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +L+         F   S+   + +   NT ++L + +A+          
Sbjct: 60  YAELPDSVITPELKDDAIKTKGYFIYPSQLFANVVARANTNDSLNTDLAAIFTAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++  P D     +  + Y
Sbjct: 120 GYPSEQDIKGLFADFDTTSNRLGNTVKDKNQRLAAVLKGVAELDFGPFDDAHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L L    ++ K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSRLIARLALHGQKSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE    T+ +    M +  +  D       NIQ G
Sbjct: 232 LLQAKKPFDERLIEDG------FFGQESNHTTYNLARMNMFLHNINYDK-----FNIQLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLLEPHFADEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E++IR++L++N+ +E ++AL  +
Sbjct: 336 AFVLHALHYL----SAKGRAAIVCFPGIFYRGGA---EAKIRQYLVDNNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  K +      Q I+A+ L+    N      ++ D+   QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKPDTT---TQFIDASALFKKETN----NNVLLDEHIEQIMAVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E     ++ +             V   +      +   +A+L A++  T  ++  L 
Sbjct: 442 ASKEEVPHVAQSVPLERIAANNYNLSVSSYVEARDTREVVDIAQLNAELKTTVARIDELR 501

Query: 512 QSFWLDILKPMMQQIYP 528
           +     + +   ++   
Sbjct: 502 KQIDAIVAEIEGEEDEA 518


>gi|113866035|ref|YP_724524.1| Type I restriction-modification system methylation subunit
           [Ralstonia eutropha H16]
 gi|113524811|emb|CAJ91156.1| Type I restriction-modification system methylation subunit
           [Ralstonia eutropha H16]
          Length = 835

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 122/575 (21%), Positives = 210/575 (36%), Gaps = 66/575 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++K A+ L G    ++F + I     L+R     +  R  V  + +  G S 
Sbjct: 4   TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVIAERMNAGESR 63

Query: 67  ------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIF 115
                  +LE + K A Y +          L   +       N   S I + +     + 
Sbjct: 64  ANAEKSAELERWYKGAEYFWVPPRSRYKFLLDEAHQNVGDSLNKALSGIETANTKLYDVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173
           E  DF+  + + +   +  +    +F    L  +      ++   YE+LI  F     + 
Sbjct: 124 EHIDFTRKVGQSKIPDIKLRQLITHFGIYRLRNEDFEFPDLLGAAYEYLIGEFADSAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   L+           P +   +YDP CG+GG L  A  ++ + G  
Sbjct: 184 GGEFYTPRSVVRMMVRLI----------QPTLAHDIYDPCCGSGGMLIAAKEYIDEHGED 233

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
            +        GQE      ++    ML+  +        + N+Q   TL++         
Sbjct: 234 GRKAN---LFGQEFNGTVWSIAKMNMLLHGIS-------TANLQNEDTLAEPQHVEGGEL 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVE----KEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             F   L+NPPF   W   +   +       K  E  R+G          ++FL H+   
Sbjct: 284 MHFDRVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGAKKADLMFLQHMLA- 342

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                  GG  A V+    LF    G  E  IR  ++E+DL+EA++ +  +LF+ T I  
Sbjct: 343 ---VTRDGGMVATVMPHGVLFR---GGEEKAIRAGIVEDDLLEAVLGVAPNLFYGTGIPA 396

Query: 406 YLWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            + +L  R          K  ERRGKV  INA   +     EG+ +  +  +   +I+  
Sbjct: 397 CILVLRQRVQNGANRVSGKPAERRGKVLFINADREFF----EGRAQNHLLPEHIEKIVTT 452

Query: 456 YVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
           +   +    FS ++D  T       + + R    +   +   + A L   +   ++    
Sbjct: 453 FNEFKQVEGFSAIVDNATLKANDYNLNIRRYADNTPPPEPHDVRAHLVGGVPKAEVQAKS 512

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
             F    L PM   +        F  E  K  + K
Sbjct: 513 TLFAAHGLNPMDLFVERDAKYVDFKPELAKRRDLK 547


>gi|239827073|ref|YP_002949697.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239807366|gb|ACS24431.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 498

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 188/461 (40%), Gaps = 55/461 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A+ L  +    ++  V+L    L+ +    +     + ++       +   +
Sbjct: 6   FEEKLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKE-----DPDFAED 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGS-------TNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +A   F+       + +             +     I   +D+ K +         
Sbjct: 61  RDAYMADGVFWVPETARWNYIAERSKLPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPE 120

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           + +     +L +I   FS I++      +  V+  +YE+ + +F +   +G  +F TP+ 
Sbjct: 121 LDK----RILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKC 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   ++           P     +YDP CG+GG    ++  V +   H      +  
Sbjct: 177 VVKLMVEMI----------QPFKGY-VYDPACGSGGMFVQSIKFVEE---HAGNKFDVSI 222

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    + IR +E+      +   +   T  +DL    +  Y L+NPPF 
Sbjct: 223 YGQESNPTTWKLAKMNLAIRGIEN------NLGPKHADTFHEDLHPTLKADYILANPPFN 276

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                    VE         R+  G+P   + +  +L H+ +KL       G+AA+VL++
Sbjct: 277 DSDWGQPKLVED-------PRWKFGVPPAGNANYAWLQHIIDKL----GQNGKAAVVLAN 325

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L      SGE EIR+ ++  DL++AI+ALP  LF+ T+I   +WIL+  K     GK 
Sbjct: 326 GSL--SSTTSGEGEIRKNIVNADLVDAIIALPDKLFYTTSIPVCIWILNRNKKNP--GKT 381

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             I+A      +    +K R ++D+  R+I D Y+  +N  
Sbjct: 382 LFIDARKFGQLV---TRKLRELSDEDIRKIADTYIHWQNND 419


>gi|325283711|ref|YP_004256252.1| type I restriction-modification system, M subunit [Deinococcus
           proteolyticus MRP]
 gi|324315520|gb|ADY26635.1| type I restriction-modification system, M subunit [Deinococcus
           proteolyticus MRP]
          Length = 505

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 110/509 (21%), Positives = 201/509 (39%), Gaps = 47/509 (9%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + +   +W+  +   G    +++   +L    ++ +    +    A++ +Y        
Sbjct: 7   QSEINAILWRACDTFRGTVDPSEYKNYLLTMLFVKYISDVWQDHYDALKAEYGDDEDRIR 66

Query: 68  DLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                  FV   G  F +      +          L +   +       +F +  F+S  
Sbjct: 67  RRLERDRFVMPEGTLFKDLYAQRGADNLGEIIDQALLAIEDANKGKLSGVFRNISFNSEA 126

Query: 125 ---ARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 E+   L  + ++F    ++L P  + +  ++ N YE+LI RF +   + A +F 
Sbjct: 127 ALGQTKERNIRLKNLLEDFHHPKLDLRPSRIGNLDIIGNAYEYLIGRFAAGAGKKAGEFY 186

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L   L           +P     +YDPTCG+G  L     +V   GS +    
Sbjct: 187 TPPEVSDLMARLT----------APQPGERIYDPTCGSGSLLIKCAQNVQAQGSQNY--- 233

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQE    T+A+    M +  ++ D R +    I+    L  D     +F   ++N
Sbjct: 234 --AIYGQEQNGSTYALARMNMFLHGVD-DARIEWGDTIRNPLHLEDDKL--MKFEVVVAN 288

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +D     HK     RF  G+P    G   F+ H+   L      G R  +
Sbjct: 289 PPFSLDKWGAEDVSSDRHK-----RFERGIPPKGKGDYAFISHMLGSL---AEVGSRMVV 340

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF G A   E +IR  L+E  L++A++ LPT+LFF T I   L +       +R
Sbjct: 341 VVPHGVLFRGAA---EGKIRARLIEEGLLDAVIGLPTNLFFGTGIPAALLVFRKGAEAQR 397

Query: 419 RG--KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475
            G   V  I+A+  + + +N    +  + +    +I+D Y +R    K++R++       
Sbjct: 398 NGQADVLFIDASREFAAGKN----QNQLREADIVKIVDTYRARNGVDKYARVVPLDEIAA 453

Query: 476 R--RIKVLRPLRMSFILDKTGLARLEADI 502
               + + R +  S   +   L  ++ +I
Sbjct: 454 NDYNLNIPRYVDTSEEAEPIDLGAVQTEI 482


>gi|87300611|ref|ZP_01083453.1| type I restriction system adenine methylase [Synechococcus sp. WH
           5701]
 gi|87284482|gb|EAQ76434.1| type I restriction system adenine methylase [Synechococcus sp. WH
           5701]
          Length = 603

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/469 (21%), Positives = 179/469 (38%), Gaps = 63/469 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A+ L  +    ++  V+L    L+ +  + E  R+ +      + G+N +  
Sbjct: 93  FEAKLWLTADKLRNNMDAAEYKHVVLGLIFLKYISDSFEEHRAKLLAGEGDYEGANPEDP 152

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
              K A   F+  +E   S L +   +       ++    I   +   K +         
Sbjct: 153 DEYK-AENVFWVPAEARWSHLQANAKQSTIGKLVDDAMVAIERDNPRLKGVLPKDYARPA 211

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD------RVMSNIYEHLIRRFGSEVSEGAEDF 177
           + +      L ++    + IEL   +  +       ++  +YE+ + RF S   +    F
Sbjct: 212 LDK----QRLGELIDVIATIELTAASEGEQTHRSVDLLGRVYEYFLTRFASAEGKNGGQF 267

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L           P     +YDP CG+GG    +   V   G      
Sbjct: 268 YTPSCVVRCLVEML----------EPYKG-RIYDPCCGSGGMFVQSEKFVESHGGKLG-- 314

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQE    T  + V  + +R +E+D         +   +  +DL    R  Y L+
Sbjct: 315 -DISIYGQESNATTRRLAVMNLALRGIEAD------FGPEHADSFRRDLHPDLRADYVLA 367

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF               +  +  R+  G+P   + +  ++ H  + L       G A 
Sbjct: 368 NPPFNDSDW---------FRKDDDVRWQFGVPPKGNANFAWVQHFIHHLAPQ----GMAG 414

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-- 415
            VL++  + + +  SGE EIR+ L+E DL++ +VALP  LF+ T I   LW L+  K   
Sbjct: 415 FVLANGSMSSNQ--SGEGEIRKALIEADLVDCMVALPGQLFYSTQIPVCLWFLAKSKAAD 472

Query: 416 -----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +RRG    I+A  L T I    +  R + +    +I   Y   
Sbjct: 473 GQRGFRDRRGHTLFIDARKLGTLI---DRVHRELLEADLAKISSTYHRW 518


>gi|83720663|ref|YP_443257.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
 gi|257139493|ref|ZP_05587755.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
 gi|83654488|gb|ABC38551.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
          Length = 518

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/484 (22%), Positives = 202/484 (41%), Gaps = 64/484 (13%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
             G+  +L     ++K A+ L G+ + +D+  V L    L+ +  A E    A+  + + 
Sbjct: 8   KNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLAEDVR 67

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                 +      +A   F+   E   S L +           ++    I   +++ K +
Sbjct: 68  AAEDKDEY-----LADNVFWVPKEARWSHLQANAKLPAIGTLIDDAMRAIEKDNESLKGV 122

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+ +      ++  +YE+ + +F     + 
Sbjct: 123 LPKDYARPALNKV----MLGELIDLISGIALNEEGDRSKDILGRVYEYFLGQFAGAEGKR 178

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   +L           P     +YDP CG+GG    +   V + G  
Sbjct: 179 GGEFYTPRSVVRVLVEML----------EPYSG-RVYDPCCGSGGMFVQSEKFVHEHGGR 227

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R ++SD R +         +  KD     +  
Sbjct: 228 IG---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIRWNNEG------SFHKDELRDLKAD 278

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               +  E  R+  G P + + +  +L H+ + L       
Sbjct: 279 YVLANPPFNISDWGG-------DRLREDVRWKFGAPPVGNANYAWLQHIFHHL----APN 327

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + ++G  E EIRR ++E D ++ +VALP  LF+ T I   LW L+  
Sbjct: 328 GTAGVVLANGSMSSNQSG--EGEIRRAMIEADAVDCMVALPGQLFYSTQIPACLWFLARN 385

Query: 414 KT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENGKF 464
           K       +RRG+V  I+A  L   I    + RR +NDD  ++I D Y +     E G++
Sbjct: 386 KNPGGGLRDRRGQVLFIDARKLGVLI---DRTRRELNDDDIKRIADSYHAWRGEKEAGEY 442

Query: 465 SRML 468
           + +L
Sbjct: 443 ADVL 446


>gi|126665439|ref|ZP_01736421.1| putative type I restriction-modification system, M subunit
           [Marinobacter sp. ELB17]
 gi|126630067|gb|EBA00683.1| putative type I restriction-modification system, M subunit
           [Marinobacter sp. ELB17]
          Length = 533

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 95/486 (19%), Positives = 191/486 (39%), Gaps = 65/486 (13%)

Query: 1   MTEFTGSAA----SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M++ + S      +    +W  A+ L G  + +++  V+L    L+ +    E  + A+ 
Sbjct: 1   MSKQSSSVKKNTRTFEQSLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDKFEARKQALI 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSD 109
            +      + +D+  F       FY       +TL     ++++          I   + 
Sbjct: 61  AEG---QEAYVDMVEFY-TMKNVFYLPEHARWNTLQKQAKQDDIAIKIDTALYAIEKLNP 116

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL----HPDTVPDRVMSNIYEHLIRR 165
           + K    D  FS     + K   L     N + +       PD   + ++  +YE+ + +
Sbjct: 117 SLKGALPDNYFSRMGLEVSKLAALIDSINNIATVSDQSSAGPDGNEEDLVGRVYEYFLGK 176

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +G  +F TP+ +V+L   ++                 +YDP CG+GG    ++ 
Sbjct: 177 FAATEGKGGGEFYTPKCIVNLLAEMIEPYQG-----------KIYDPCCGSGGMFVQSVK 225

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +   H      +  +GQE    T+ +    + IR + S      +       T  K+
Sbjct: 226 FLRN---HEGNQKDISIYGQEYTATTYKLAKMNLAIRGIAS------NLGDVPADTFFKN 276

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +  + ++NPPF  K  +  D +  + +       G   P   + +  +++H+ +K
Sbjct: 277 QHPDLKADFIMANPPFNMKAWRGADELSTDPRWA-----GYDAPPTGNANYAWILHMVSK 331

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       G A  V+++  +      SGE  IR+ L+ENDL++ ++ALP  LF+ T I  
Sbjct: 332 LSAQ----GTAGFVMANGSMST--NTSGEGVIRQKLIENDLVDCMIALPGQLFYTTQIPV 385

Query: 406 YLWILSNRKT------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            LW ++  K               R G+   I+A ++ + I    +  + +  D   +I 
Sbjct: 386 CLWFVTKNKKAQAIAGHSDSNHRNREGETLFIDARNMGSMI---SRTHKELTADDIAEIT 442

Query: 454 DIYVSR 459
             Y + 
Sbjct: 443 RTYHAW 448


>gi|78358466|ref|YP_389915.1| type I restriction-modification system methylation subunit-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220871|gb|ABB40220.1| type I restriction-modification system methylation subunit-like
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 504

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/527 (21%), Positives = 204/527 (38%), Gaps = 51/527 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +          L   G +
Sbjct: 8   SQSELESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEE----LADALEESGGD 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSS 122
            +  +  +   +     + +  +     N     ++ L +   +  D    +F D  +++
Sbjct: 64  QEYAALPEQHRFQIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQWTN 123

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    L  ++ ++FS   L     P+  +   YE LI++F  +    A +F T R 
Sbjct: 124 K-DRLPDRMLR-ELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRT 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L  
Sbjct: 182 VVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRN---LRL 228

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
            GQE    T A+    + +  +E          I +G TL+   F       +F   L+N
Sbjct: 229 FGQERNLLTSAIGRMNLFLHGIED-------FRIVRGDTLANPAFVEGDRLMQFDVVLAN 281

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+  K   D+DA          GR   G P        F  H+   ++      GR AI
Sbjct: 282 PPYSIKQW-DRDA----WSADPWGRNIYGTPPQGRADYAFWQHIIKSMKAK---SGRCAI 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       ES +R  L+ +D++E ++ L  +LF+ + +   + I    K +ER
Sbjct: 334 LFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKER 389

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
           R KV  INA +  T  R +      + DD  ++I+  Y +  +   F+R++       + 
Sbjct: 390 RNKVLFINAVNEVTRERAQS----FLTDDHIQRIVAAYQAFGDEDGFARVVGNDEIREKA 445

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +  PL +               ++ ++     Q   + + + M  
Sbjct: 446 SNLSIPLYVRAENGNGNGNGSTETVSLKQAIANWQESSMALRESMDG 492


>gi|296453353|ref|YP_003660496.1| type I restriction-modification system subunit M [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182784|gb|ADG99665.1| type I restriction-modification system, M subunit [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 520

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 125/538 (23%), Positives = 203/538 (37%), Gaps = 73/538 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           MT      A L   IW  A  L G     DF + +L F   R +           E    
Sbjct: 1   MTNSGAQRAELHKAIWNIANVLRGSVDGWDFKQYVLGFLFYRFISEDITSYLNGYEHQAG 60

Query: 54  AVREKYLAFGGSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN- 110
            V   Y     +  +      V+  GY F   S+   +     +   NL   +     N 
Sbjct: 61  DVDFDYAKLDDATAEQVRKSMVEEKGY-FILPSDLFANVRNRADGDENLNETLQRVFKNI 119

Query: 111 ------------AKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD--- 152
                        + +F+D D +S       +E+   L K+      ++L  ++  D   
Sbjct: 120 EGSAIGSRSESSLRGLFDDLDLNSRKLGDTVVERNAKLVKVLNAIGNLDLGTESFADNTI 179

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + +   +   +F TP++V  L T +       + K        +YDP
Sbjct: 180 DAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIATHGKSEVNK--------VYDP 231

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  ++  +                GQE    T+ +C   M +  +  D     
Sbjct: 232 ACGSGSLLLQSIKVLGKDKVRQG------FFGQEKNLTTYNLCRINMFLHDVNYD----- 280

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             NI  G TL        + F   +SNPP+  KWE D +            RF P   L 
Sbjct: 281 HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPTLIND-----PRFSPAGVLA 335

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F MH+ + L       G AAIV     L+    G  E +IR++LLE + I+A
Sbjct: 336 PKSKADLAFTMHMLSWLAA----DGTAAIVEFPGVLYR---GGKEQKIRKYLLEKNFIDA 388

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF T+IAT + +L   K ++    V  I+A++ +  + N    +  ++ D  
Sbjct: 389 VIQLPPNLFFGTSIATCIIVLRKSKNDD---SVLFIDASERFVHVGN----QNQLSPDDI 441

Query: 450 RQILDIYVSRE-NGKFSRMLDYRTFGYRR--IKVLRPLRMSFILDKTGLARLEADITW 504
             I+D YV RE    FS +            + V   ++     +K  +A L   I+ 
Sbjct: 442 AAIMDAYVKREPVEHFSAVASLEDIRKNDYVLSVSSYVQPKDTREKIDIAALNRQISD 499


>gi|254718011|ref|ZP_05179822.1| Type I site-specific deoxyribonuclease HsdM [Brucella sp. 83/13]
 gi|265982954|ref|ZP_06095689.1| type I restriction-modification system methyltransferase subunit
           [Brucella sp. 83/13]
 gi|306839791|ref|ZP_07472592.1| type I restriction-modification system, M subunit [Brucella sp. NF
           2653]
 gi|264661546|gb|EEZ31807.1| type I restriction-modification system methyltransferase subunit
           [Brucella sp. 83/13]
 gi|306405146|gb|EFM61424.1| type I restriction-modification system, M subunit [Brucella sp. NF
           2653]
          Length = 518

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 128/531 (24%), Positives = 208/531 (39%), Gaps = 68/531 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  T   A+L   IW+ A D+ G     DF + +L     R +            E  K
Sbjct: 1   MT-STQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGVLFYRFISENFASYIEGGDESIK 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S +  E     +K  GY  Y  S+   +      +   L + +A+         
Sbjct: 60  YAALADSVVTAEIKDDAIKTKGYFIY-PSQLFANVAAKARSNEKLNTELATIFAAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F DFD +S        +K   L  + K  +G++  H D     +  + 
Sbjct: 119 NGYPSEHDIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLDFGHFDAAHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G 
Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHKQTSVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A  H                 GQE+   T+ +    M +  +  D       NIQ 
Sbjct: 231 LLLQAKKHFDAHVIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIQL 279

Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F + K F   +SNPP+  KW    D      +     RF P   L   S   
Sbjct: 280 GNTLLEPHFGSDKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  
Sbjct: 335 FAFVLHALSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +L+  KT+      Q I+A+ L+    N      ++ D    QI+  
Sbjct: 388 NLFYGTTIAVNILVLAKNKTDTL---TQFIDASGLFKKETN----NNVLLDSHIEQIMQA 440

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           + S+ +   F+R +             V   +      +   +A L A + 
Sbjct: 441 FDSKNDVDHFARSVPLERIAGNDYNLSVSSYVEAKDTREAVDIAALNAKLK 491


>gi|146297671|ref|YP_001181442.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411247|gb|ABP68251.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 814

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 118/587 (20%), Positives = 227/587 (38%), Gaps = 58/587 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++K A+ L G    +++ + I     L+ +    E  R  +++++ 
Sbjct: 1   MAGDKITLRQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYISDVFEEKRHELKDRFK 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
           A G S   +   ++     G +F+   +     +        N  N   S +   +    
Sbjct: 61  AMGFSERQIHELLEDPSSYGDAFFVPEKARWGNILKLKEDVGNQLNKALSALEEANPELD 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            + +  DF++   +   K   L  +  +F+  +L P       ++   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQEL   T ++C   M++  +          +I+    L+  +F   
Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIND-------AHIENEDVLTTPMFLEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              KRF   L+NPPF + + +     E+  K G     G          ++FL H+   L
Sbjct: 281 GYIKRFDRILANPPFSENYTRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 K----DDGVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFS 465
           + +++  K E  + K+  INA   +   RN    +  +  +   +I+ ++   +E  K+S
Sbjct: 388 IIVINKNKPEHLKNKILFINADREYGEGRN----QNFLRPEDIEKIVTVFDEKKEIPKYS 443

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK----LSPLHQSFWLDIL 519
           R++D +        + + R +  S   +   +         +K         + F L   
Sbjct: 444 RLVDIKEIEENDFNLNIRRYVDNSPDPEIEDVRAHLFGGVPKKEVLLYEKQLRKFNLSYD 503

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
             + ++   Y   +  + +  +  E      +   +           
Sbjct: 504 ILLAEKSENYLEFKKDMTDRNQIRELIDNCTEVKVTIEKHKEKLLDW 550


>gi|169825074|ref|YP_001692685.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
 gi|167831879|dbj|BAG08795.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
          Length = 502

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 116/528 (21%), Positives = 206/528 (39%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +       IW  A  LWG     ++ KVI+    LR +  A E     + E+  
Sbjct: 1   MAEKTNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISTAFEQRYKELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +         F+   E   ST+ +           ++    I + + N K 
Sbjct: 59  ---GDGFEDDRDAYTMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F + I++      + ++   YE+ I +F  +   
Sbjct: 116 VLPKNYGSPDLDK----KVLGDVVDIFTNNIDMSDTEASEDLLGRTYEYCIAQFAEKEGV 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP  VV    ++L           P     +YD  CG+GG    +   +   G+
Sbjct: 172 GGGEFYTPSSVVKTLVSIL----------KPFENCRVYDCCCGSGGMFVQSEKFLEAHGA 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE  P+T  +    M IR +++D             T S DL    + 
Sbjct: 222 KRGA---ISVYGQEANPDTWKMAKMNMAIRGIDAD------FGPYNADTFSNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +   +         R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYHPWGQQALQDD-------KRWKYGLPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE  IR+ ++E+DLIE IVA+PT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALST--QTSGEGTIRKKIIEDDLIEGIVAMPTQLFYSVTIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A  +   +    +K R  +++  +++ D + + +NG       F  
Sbjct: 380 NK--KQKGKTLFIDARKMGHMV---DRKHRDFDEEDIQKLADTFTAFQNGTLEDVKGFCA 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +        +   +L P R   I ++        +   R  S L   F
Sbjct: 435 VASLEDIAKQDY-ILTPGRYVGIEEQEDDGEPFEEKMARLTSELSDMF 481


>gi|160903325|ref|YP_001568906.1| N-6 DNA methylase [Petrotoga mobilis SJ95]
 gi|160360969|gb|ABX32583.1| N-6 DNA methylase [Petrotoga mobilis SJ95]
          Length = 511

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 110/513 (21%), Positives = 214/513 (41%), Gaps = 44/513 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +      +L N++W+ A  + G      +   ILP   L+RL    E   + + EK+ 
Sbjct: 1   MAQNNLDTKTLENWLWEAACKIRGPIDAPKYKDYILPLIFLKRLSDVFEDELNELSEKFG 60

Query: 61  AFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGS--TNTRNNLESY---IASFSDNAKA 113
           +   +    E F ++      FY   E   S +    TN    L      IA ++   + 
Sbjct: 61  SLETA----EEFSRIDPGLVRFYLPPEARWSEVAKKTTNVGEYLTDAVRTIARYNPKLQG 116

Query: 114 IFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +  DF++T    R+    +L  +        L    V   ++   YE+L+R+F     
Sbjct: 117 VIDIVDFNATAGGQRIISDDVLVALIDVLGRHRLGLKDVDPDILGRAYEYLLRKFAEGSG 176

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + +L           P     +YDP CG+GG L  A     +  
Sbjct: 177 QSAGEFYTPGEVAILMSKIL----------DPKPGNEVYDPCCGSGGLLIKAHLRFKEKY 226

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S  +    L  +GQE+   T+A+    + I  +E+      + N    +T    L   K+
Sbjct: 227 SEDRTKEPLKFYGQEILHSTYAMAKMNIFIHDMEAQIALGDTMNRPAFTTSEGPL---KK 283

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F    +NP + + + +        ++N    RF  G P  +     ++ H+   L+    
Sbjct: 284 FDLVTANPMWNQTFSQSV------YENDPYNRFVFGYPPSNSADWGWIQHMFASLK---- 333

Query: 352 GGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             G+ A+V+ +  +  G    G   E +IR+  +E DL+E+++ LP +LF+ T+    + 
Sbjct: 334 NDGKMALVIDTGAVSRGSGNVGKNRERDIRKEFVEKDLVESVLLLPENLFYNTSAPGVII 393

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           +++  K  +R+ ++ LINA+ L+   R +      + D+   +I +IY++ +  +  S++
Sbjct: 394 VINKLKPAQRQDQILLINASKLYEKGRPK----NFLPDESVERIAEIYLNWKEEEGISKI 449

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +           +     ++   +   L   +A
Sbjct: 450 ISKEEAAKNDYNLSPSRYVAQNGEDETLPLEDA 482


>gi|224369050|ref|YP_002603214.1| HsdM2 [Desulfobacterium autotrophicum HRM2]
 gi|223691767|gb|ACN15050.1| HsdM2 [Desulfobacterium autotrophicum HRM2]
          Length = 515

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 115/544 (21%), Positives = 229/544 (42%), Gaps = 55/544 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    SL  ++W +A+ L G    +DF   I     L+R     +     + EK     
Sbjct: 1   MTLDLPSLETWLWGSADILRGSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEK----- 55

Query: 64  GSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFED 117
             N D+E+      Y      +T+ +      + N    ++  +A+  +   N + +   
Sbjct: 56  -ENWDIEAAASDPDYHKFFIPDTARWQTIIEKTENIGQAIDEALAAIEEENLNLEGVMTA 114

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             F +    +    LL ++  +F+   L + D     ++ + YE+LI+ F  +  +   +
Sbjct: 115 VHFGNK--DVLSDALLQRLLNHFNKYSLKNKDLYTPDLLGDAYEYLIKMFADDAGKKGGE 172

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ VV L   L+           P    ++YDPTCG+GG L ++  ++A+ G     
Sbjct: 173 FYTPKGVVRLIVQLI----------KPEPKNSVYDPTCGSGGMLVESARYIAEQGGKVGE 222

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  GQE    T A+C   M++    ++D ++  + +  + ST   +L     F   
Sbjct: 223 LLDASLFGQEKNLGTWAICKINMILHNYSDADIKKGCTLSTPKHSTSDGELMI---FDRV 279

Query: 296 LSNPPFGKKWEKDKDAVE--------------KEHKNGELGRFGPGLPKISDGSMLFLMH 341
           ++NPPF +    D   V+               +  +   GRF  G+P      + FL H
Sbjct: 280 IANPPFSQNKWWDAAEVDVKVNGNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAFLQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + + L    N  G+  IVL    LF G +   E +IR+ +L++D++EA+V LP+ LF+ T
Sbjct: 340 MISVL----NQNGKLGIVLPHGVLFRGGS---EGKIRKGILKDDILEAVVGLPSKLFYNT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
            I   + I++  K    + KV  I+A+  +   +N+ +    + ++  +++++ Y + +E
Sbjct: 393 GIPASILIVNKSKPIHLKNKVIFIDASQDYKEGKNQNR----LEEEHVKKVVEAYDAGQE 448

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             KF R++D +        +     +    ++  +  +      +++    Q     +  
Sbjct: 449 IDKFMRIVDMKEIKENDYNLNITRYIDTSEEEVAVDLVATLAGIKEIEAREQEIDARLAG 508

Query: 521 PMMQ 524
            + +
Sbjct: 509 YLKE 512


>gi|88707233|ref|ZP_01104920.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
 gi|88698526|gb|EAQ95658.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
          Length = 497

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/528 (23%), Positives = 217/528 (41%), Gaps = 47/528 (8%)

Query: 7   SAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +++L + +W+ A  L G     TD+   ILP    +R+    +   +   E +     S
Sbjct: 3   QSSNLKSTLWEAANTLRGSAVDRTDWKGYILPLLFFKRISDCWDEETAEASELFGDPDPS 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                   +V     +N    +   +G+   ++ ++    +  D    IF   D+ +   
Sbjct: 63  LYQEMHRFQVPEGCHWNDVRGTAQNVGAA-LKHAMQEIERANPDTLYRIFGAADWGNKEK 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE-GAEDFMTPRDVV 184
             ++  LL  + + FS I+L  ++V   ++ + YEHL+ +F        A +F TPR VV
Sbjct: 122 FTDE--LLKDLIEGFSSIKLGNNSVDTDILGDAYEHLVGKFADVNRRNKAGEFYTPRSVV 179

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L           P    ++YDP CGTGG L  A++HV   G   +       +G
Sbjct: 180 RMMVEIL----------DPKEGESIYDPACGTGGMLLAAIDHVKRNGGDPRTFFG-KIYG 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNP 299
           QE    T +V    +++  +E          + +  TL    FT        F   ++NP
Sbjct: 229 QEKNLTTSSVARMNLVLHGIED-------FQVAREDTLRDPAFTDGAGGLATFDCVIANP 281

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K    +       +N   GR   G+P  S G   F+ H+   +      G R A+V
Sbjct: 282 PFSLKEWGRE-----VWENDPWGRAQYGMPPDSYGDYAFVQHMIASM--AQGRGSRMAVV 334

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF   A   E +IR  LL  DLIEA++ L  +LF+ T +A  + IL  +K  ER+
Sbjct: 335 LPQGALFRKSA---EGKIREVLLREDLIEAVIGLAPNLFYGTGLAGCVVILRRKKPAERK 391

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM--LDYRTFGYR 476
            KV +I+A+ L+   R     +  ++     QI+  + + E+    +++  +D       
Sbjct: 392 NKVLIIDASSLFRKGRA----QNFLDSKHGEQIVKWFQAFEDVEDRAKVVAVDEIKDEGW 447

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            + + R +      D   L   EA   +++     +S    +   +  
Sbjct: 448 TLNISRYVLPPIGEDIPLLP--EAVAAFKEALTEARSAEDHLRNVLND 493


>gi|319951306|ref|ZP_08025140.1| putative type I restriction/modification system DNA methylase
           [Dietzia cinnamea P4]
 gi|319435021|gb|EFV90307.1| putative type I restriction/modification system DNA methylase
           [Dietzia cinnamea P4]
          Length = 535

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 194/497 (39%), Gaps = 65/497 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L + +WK A+ L G    + +  V+L    L+ +  A E  R A+RE+ L
Sbjct: 8   MPMEASTPKELKDTLWKAADKLRGSMDASQYKDVVLGLVFLKYVSDAFEERRDAIREE-L 66

Query: 61  AFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLGSTNTRNNLESY-----IASFSDNA 111
           +        E+      Y     F+  +E     L          S      I    D A
Sbjct: 67  SGEDEAYLAETLEDADEYLGSGVFWVPAEARWEYLSRHAKGIPASSTNDAQSIGELIDAA 126

Query: 112 KAIFEDFDFSSTIARLE--------KAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEH 161
                  +  S +  L         +   L ++   F+              ++  +YE+
Sbjct: 127 MRALMQAN-ESLVGTLPVLFGRDNVEQRRLGELVDLFNAARFTGGGASKARDLLGEVYEY 185

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F     +   +F TP  VV     +L                 +YDP CG+GG   
Sbjct: 186 FLDKFAKAEGKRGGEFYTPPVVVRTLVEILEPHSG-----------RVYDPCCGSGGMFV 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                +     H + P  +  +GQEL   T  +    + I  ++S          + G T
Sbjct: 235 QTEKFLE---GHKEDPTNVAVYGQELNERTWRMAKMNLAIHGIDSQG-----LGSRWGDT 286

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            ++D+    +  Y ++NPPF  K            +  +  R+  G+P   + +  ++ H
Sbjct: 287 FARDIHPDMQADYVMANPPFNIKDWA---------RREDDPRWVYGVPPKRNANYAWMQH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + +KL       G A +V+++  +    + SGE +IR+ ++E D+++ IVALP  LF  T
Sbjct: 338 ILSKL----APNGEAGVVMANGTMTT--STSGEGDIRKAMVEGDVVQCIVALPGQLFRAT 391

Query: 402 NIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            I   +W  +  KT       +RRG+V  I+A +L   I    +  R ++++  ++I + 
Sbjct: 392 GIPVCVWFFAKNKTAGKGGSVDRRGQVLFIDARELGHMI---DRVERTLSEEDLQRIAET 448

Query: 456 YVSRENGKFSRMLDYRT 472
           + S   G+ S + +Y  
Sbjct: 449 FRSWR-GRPSAVGEYED 464


>gi|331006357|ref|ZP_08329668.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
 gi|330419839|gb|EGG94194.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
          Length = 517

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 123/534 (23%), Positives = 208/534 (38%), Gaps = 70/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT  T   A+L   IW  A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-STQQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSIH 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      D++         F   S+   +   + N   +L + +A+          
Sbjct: 60  YAALSDEVITPDIKDDAIKTKGYFIYPSQLFATVAKNANNNESLNTDLAAIFAAIEASAS 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH------PDTVPDRV 154
                 + K +F DFD +S        +K   L  + K  +G++        PD     +
Sbjct: 120 GYPSEPDIKGLFADFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGHDFYEKPDAAQIDL 179

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  
Sbjct: 180 FGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPAA 231

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A  H  +              GQE+   T+ +    M +  +  D       
Sbjct: 232 GSGSLLLQAKKHFDNHIIEDG------FWGQEINHTTYNLARMNMFLHNINYDK-----F 280

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           N+Q G+TL+   F   K F   +SNPP+  KW    D            RF P   L   
Sbjct: 281 NMQLGNTLTDPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPK 335

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++
Sbjct: 336 SKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVI 388

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N       +  D   Q
Sbjct: 389 SLAPNLFFGTTIAVTILVLSKHKTDTT---TQFIDASGLFKKDTNT----NTMTGDHIEQ 441

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARLEADIT 503
           I+ ++ S+ N   F+R + Y        + V   +    + +   ++ L A++ 
Sbjct: 442 IMQVFDSKANVEHFARSVPYEEVANDYNLSVSSYVEAKDMREVVNISELNAELK 495


>gi|258509976|ref|YP_003175639.1| Type I restriction modification system protein HsdMI, M subunit
           [Lactobacillus rhamnosus Lc 705]
 gi|257152817|emb|CAR91788.1| Type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 540

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 126/574 (21%), Positives = 226/574 (39%), Gaps = 78/574 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
            V +KY  +     +LE                GY     + Y+            L+  
Sbjct: 61  NVTQKYAQYMNPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYATLIGKIQAHTFALDDL 120

Query: 104 IASFSD------------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD 148
             +  D            +   +F D D SS        ++   +       + I+L   
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A   +    +RT
Sbjct: 181 --QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDNQ----VRT 234

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   HV D       P ++  HGQEL   T  +    +++  +  D 
Sbjct: 235 IYDPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTFNLARMNLMLHGVSYD- 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ G TLSKD    +   F   + NPP+   W    D  +K   +     +G 
Sbjct: 287 ----DMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW----DNSDKRLSDPRFRDYGV 338

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF    G+ E +IR+ LL ++ 
Sbjct: 339 -LPPKSKADFAFLLHGFYHLQ----EHGTMGIVLPHGVLFR---GAKEGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
              ++I+  Y +R++  K++ +    + +   Y  + + R +       +  L +++AD+
Sbjct: 444 VNIQKIVTTYQNRQDVDKYAHVASPAEIKENDY-NLNIPRYVDTFEPEPEIDLDQVKADL 502

Query: 503 T--WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                 +S   Q+F     + ++ Q+      E+
Sbjct: 503 KQLDEAISHHEQAFNELASQLVVTQVNDQSKPEA 536


>gi|320449901|ref|YP_004201997.1| type I restriction-modification system subunit M [Thermus
           scotoductus SA-01]
 gi|320150070|gb|ADW21448.1| type I restriction-modification system, subunit M [Thermus
           scotoductus SA-01]
          Length = 522

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 123/546 (22%), Positives = 215/546 (39%), Gaps = 64/546 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W  A  + G      F   ILP   L+RL    E    A R + L      +DL
Sbjct: 5   TLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFEDE-VARRAQVLGGEKVVLDL 63

Query: 70  ESFVKVAGY----SFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDF 120
               +  G      F+         +    T       +    +A  + +   + +  DF
Sbjct: 64  LEQERQRGQVTLVRFFIPENARWQAIRRQTTGLGQYLTDAVRAVARENPSLAGVIDMVDF 123

Query: 121 SSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           ++T    R+     L  +    S   L  + V   ++   YE+L+R+F     + A +F 
Sbjct: 124 NATAAGQRIISDEHLKSLIDVLSRHRLGLEDVEPDILGRAYEYLLRKFAEGQGQSAGEFY 183

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-----GSH 233
           TPR+V  L   LL           P    T+YDP CG+GG L      + +        H
Sbjct: 184 TPREVAILMARLL----------EPEPGMTVYDPACGSGGLLIKCHLRLLERFGTMENGH 233

Query: 234 HKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
            ++P     L   GQE+ P T A+     +I  LE+D         + G T+    F   
Sbjct: 234 LRLPNQIKPLRLFGQEINPATFAMARMNAVIHDLEADI--------RLGDTMRHPAFLDA 285

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               + F   ++NP + +K+ ++       ++N    RF  G P  S     ++ H+   
Sbjct: 286 AGRLQTFDLVVANPMWNQKFGQEL------YENDPFERFRFGAPPSSSADWGWMQHMLAS 339

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           L    N  GR A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +LF+ T 
Sbjct: 340 L----NEKGRMAVVLDTGAVSRGSGNQGANRERDIRKAFVEADLIEAVILLPENLFYNTT 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SREN 461
               + +++  K   + G++ LINA+ L+T  R +      + D+  ++I D+Y   R  
Sbjct: 396 APGVILVINRAK--RKPGEILLINASKLFTKGRPK----NYLADEHIQRIADLYHTWRAE 449

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
              S ++           +  P R     +K  +   E  +   + +   ++     L  
Sbjct: 450 EGLSAIITKEEASRNDYNLS-PSRYVATGEKEDVLPPEEAMVLLREAEEERAAVDQELAQ 508

Query: 522 MMQQIY 527
           ++  + 
Sbjct: 509 VLHMLG 514


>gi|58583080|ref|YP_202096.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427674|gb|AAW76711.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 645

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 201/475 (42%), Gaps = 64/475 (13%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S + L  A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+  +   
Sbjct: 133 KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 189

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                   +    +A   F+   +   S L +   +       ++    I   +++ K +
Sbjct: 190 --DPPAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 247

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+     P  V+  +YE+ + +F     + 
Sbjct: 248 LPKDYARPALNKV----MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKR 303

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VVH    ++           P     +YDP CG+GG    +   V + G  
Sbjct: 304 GGEFYTPRSVVHTLVEMI----------EPYKG-RIYDPCCGSGGMFVQSEKFVNEHGGR 352

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +C   + +R ++SD R +         +  KD     +  
Sbjct: 353 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNNEG------SFHKDELRDLKAD 403

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +   +         R+  G P + + +  +L H+ + L    +  
Sbjct: 404 FILANPPFNISDWGGERLRDDV-------RWAFGPPPVGNANYAWLQHIVHHL----SPH 452

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + +  SGE +IR+ ++E  +++ +VALP  LF+ T I   LWIL+  
Sbjct: 453 GFAGVVLANGSMSSQQ--SGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLWILAKD 510

Query: 414 ---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                    K  +RRG++  I+A ++ T +    + RR ++D +  +I   Y + 
Sbjct: 511 RSNGLVLQSKLRDRRGEILFIDARNMGTLV---DRTRRELSDAEVARIAATYHAW 562


>gi|56697572|ref|YP_167940.1| type I restriction-modification system, M subunit [Ruegeria
           pomeroyi DSS-3]
 gi|56679309|gb|AAV95975.1| type I restriction-modification system, M subunit [Ruegeria
           pomeroyi DSS-3]
          Length = 900

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 125/568 (22%), Positives = 216/568 (38%), Gaps = 68/568 (11%)

Query: 1   MTEFTG---SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MT  T    +   L   ++  A+ L G    ++F + I     L+R     E  R  + +
Sbjct: 1   MTGATLAKLTLEKLERHLFAAADILRGKMDASEFKEYIFGILFLKRCSDVFEQQREKILK 60

Query: 58  KYLAFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGST---NTRNNLESYIASFSDN- 110
           +  A G S  +             +F+         L +    N  N L   +    +  
Sbjct: 61  EQRALGRSETEALQRADHPSSYTKTFFVPPVARWDRLLNDVHANVANELNKALEGLENEN 120

Query: 111 ---AKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRR 165
               + +    +F+  +   E     L ++  +F+    L  D     ++   YE+LI  
Sbjct: 121 HNALRGVLGHINFARKVGESEIPDERLRRLISHFNKYRLLDEDFEFPDLLGAAYEYLISE 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     + A +F TPR VV L   +L           P    +LYDPTCG+GG L     
Sbjct: 181 FADSAGKKAGEFYTPRGVVQLMVRIL----------DPQGGTSLYDPTCGSGGMLNQGYE 230

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           +             L  +GQE      A+C   +L+  +          +I+ G TL   
Sbjct: 231 YALQHDGRR-----LSLYGQEDNGAVWAICRMNLLLHGI-------PDADIRNGDTLVDP 278

Query: 286 LFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    RF   ++NPPF + + K      +  + G+  RFG          ++F  H
Sbjct: 279 KHIEDGHLMRFDRVIANPPFSQNYSK------RGIQFGDRFRFGWCPTTGKKADLMFAQH 332

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L+      G+ A+V+    LF    G  E +IR  LLE D IEA++ LP +LF+ T
Sbjct: 333 MLASLK----QTGKMAVVMPHGVLFR---GGEERKIRIALLEEDCIEAVIGLPQNLFYGT 385

Query: 402 NIATYLWILS--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            I   + ++   + K + R+GKV  INA         EG+ +  I+ +   +I+  Y + 
Sbjct: 386 GIPACILVMRHPDGKPDARKGKVLFINADRE----HREGRAQNFIDPEHIEKIVSAYDAF 441

Query: 460 EN-GKFSRMLDYRTFGYR---RIKVLRPLRMSFILDKTGL-ARLEADITWRKLS---PLH 511
            +   F+ ++D           + + R    S   +   + A L   +  R++    P  
Sbjct: 442 ADVPGFAAVIDNTAIIKDEAGNLNIRRYADSSPPPEPHDVRAHLHGGVPKREIESIRPHA 501

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKES 539
           Q+   D+  P + +   Y      V++ 
Sbjct: 502 QAQGFDVDTPFVDRDTDYAEFADAVEKR 529


>gi|241895464|ref|ZP_04782760.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Weissella paramesenteroides ATCC 33313]
 gi|241871438|gb|EER75189.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Weissella paramesenteroides ATCC 33313]
          Length = 517

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 120/548 (21%), Positives = 218/548 (39%), Gaps = 72/548 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
           T      A L   +W  A DL G+   ++F   IL     R L   +      +      
Sbjct: 6   TVQATQQAELQRKLWAIANDLRGNMDASEFRNYILGLIFYRFLSDGVSAYVKELLVNDDI 65

Query: 57  ---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----------TNTRNNLES 102
              E Y      +  ++   +  G+       +      +           T       S
Sbjct: 66  TFAEAYADDEMRDDLVDDITEAMGFFVAPEFLFETLVADAQAGRFDVEKLQTAVNAVQSS 125

Query: 103 YIASFS-DNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            I   S ++ + +F+D D +ST       E++ L+ K+  N + +++  D V   V+ + 
Sbjct: 126 TIGEESEEDFRGLFDDLDLNSTRLGNTVAERSALMQKVLLNLADLDMGHDEVQIDVLGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  L   ++    D L        + +YDPT G+G 
Sbjct: 186 YEYLIGQFAANAGKKAGEFYTPQQVSKLLAQIVTKGHDTL--------QNVYDPTMGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L    ++                +GQEL   T+ +    +L+  +  +       ++QQ
Sbjct: 238 LLLRIGDYATVGN----------YYGQELNRTTYNLGRMNLLMHGVSYNQ-----FSVQQ 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F G++F   ++NPP+  KW  D         + E  R        S     F
Sbjct: 283 GDTLENDYFEGQQFDAVVANPPYSAKWNTDGKL------DDERFRKYGKTAPKSKADFAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDL 397
           + H+   L    N  G  A+VL    LF G A   E  IRR+++E D  ++A++ LP +L
Sbjct: 337 VEHMLAHL----NVTGTMAVVLPHGVLFRGAA---EGTIRRYMIEQDNVLDAVIGLPANL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + +    ++ +    V  I+A+  +   +N    +  + D Q  +I+D Y 
Sbjct: 390 FFGTSIPTTVLVFKKNRSNQ---DVFFIDASADFEKGKN----QNNLTDTQLARIVDTYD 442

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQ 512
            RE+  K++ +            +  P  +    ++  +     + E + T  +++ L  
Sbjct: 443 KREDVEKYAHLASRDEIIENDFNLNIPRYVDTFEEEEPIDLAATQKEIEETDAEIAKLTA 502

Query: 513 SFWLDILK 520
            F   + +
Sbjct: 503 EFEAMVAE 510


>gi|124008029|ref|ZP_01692728.1| type I restriction-modification system specificity subunit
           [Microscilla marina ATCC 23134]
 gi|123986443|gb|EAY26249.1| type I restriction-modification system specificity subunit
           [Microscilla marina ATCC 23134]
          Length = 921

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 237/575 (41%), Gaps = 62/575 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + A L NF+++  + L G+   +++ + I     L+RL    E  +   R+     
Sbjct: 2   KKKITLAWLENFLFQACDILRGNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKK 61

Query: 63  G-GSNIDLESFVKVAGYSFYNTSEYSLS-----TLGSTNTRNNLESYIASFS----DNAK 112
           G  + +   +  K   Y +Y                  +  + L   +A+      D   
Sbjct: 62  GLAAEVVARALNKANAYDYYIPENARWKGKDGIQHLKKHVGDALNKALAAIEDANLDKLS 121

Query: 113 AIFEDFDFSSTIARLEK---AGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
            + +  DF+ TI + +K      L    ++F  ++L  +      ++   YE+LI+ F  
Sbjct: 122 GVLKSIDFNRTIGKNKKTLDDTKLINFIQHFDTVDLRDENFEFPDILGAAYEYLIKFFAD 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP +VV L   LL           P     +YDPTCG+GG L    N+V 
Sbjct: 182 SAGKKGGEFYTPAEVVKLMVQLL----------EPAPNAEVYDPTCGSGGMLIQCKNYVE 231

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
              + +     L  +GQEL   T A+C   ML   +           I+QG T++  L  
Sbjct: 232 ---ARYNNASKLSFYGQELSGTTWALCKMNMLFHDI-------YDAKIEQGDTINNPLHV 281

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +RF   ++NPPF   +++D          G   RF   +P+ S    +F+ H+  
Sbjct: 282 VDGELQRFDVVMANPPFSADYKQDN-------IIGFKDRFRHWMPEKSKADFMFVQHMVR 334

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      GR  +V+    LF    GS E ++R WLLE   ++A++ LP  LF+ T I 
Sbjct: 335 VLK----DNGRMGVVMPHGVLFR---GSTEKDMRHWLLERGYLDAVIGLPASLFYGTGIP 387

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             L I++  K  ++R KV  INA   +     E K +  +  +   +I  +Y  R+   +
Sbjct: 388 ASLIIINK-KGADKRRKVLFINADREY----KEEKNQNKLRPEDISKITYVYHQRQELPQ 442

Query: 464 FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILK 520
           +SR++ Y  F        + R +  S   +   + A L   I   +++ L  ++W +   
Sbjct: 443 YSRLMSYNDFLREDYNFNIRRYVDNSPPAEPQDVRAHLHGGIPAAEVAALE-AYWQNYPG 501

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
              + + PY     +++ +    +  TLK    +S
Sbjct: 502 LRERVLVPYPSQAGYMQFADSIADKATLKAALEQS 536


>gi|87309189|ref|ZP_01091326.1| putative type I restriction-modification system, M subunit
           [Blastopirellula marina DSM 3645]
 gi|87288180|gb|EAQ80077.1| putative type I restriction-modification system, M subunit
           [Blastopirellula marina DSM 3645]
          Length = 543

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 103/486 (21%), Positives = 198/486 (40%), Gaps = 61/486 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + + +  S    +W  A+ L G  + +++  V+L    L+ +    +  R+A+  +  A 
Sbjct: 21  KESKAKKSFEQTLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDRFQQRRAALIAEGKA- 79

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-------FSDNAKAIF 115
               +D+  F       FY       ST+     + ++  +I S        + + K   
Sbjct: 80  --DYVDMVEFY-TMQNVFYLPENSRWSTIVKQAKQADIAVHIDSALHAVEKNNPSLKGAL 136

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            D  FS     + K   L     N S +        + ++  +YE+ + +F +   +G  
Sbjct: 137 PDNYFSRMGIDVAKLAALIDSINNLSTVADQAAESEEDIVGRVYEYFLGKFAATEGKGGG 196

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ VV+L   +L           P     +YDP CG+GG    ++  +    SHH 
Sbjct: 197 EFYTPKCVVNLLAEML----------EPYSG-KIYDPCCGSGGMFVQSVKFIT---SHHG 242

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T+ +    + IR +        +       T  KD     +  Y 
Sbjct: 243 NQKDISIYGQEQTSTTYKLAKMNLAIRGIAG------NLGEVPADTFFKDQHPDLKADYI 296

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF  K  +  D +  + +       G  +P   + +  +++H+ +KL    +  G 
Sbjct: 297 LANPPFNLKAWRGPDELTDDPRWS-----GYDVPPAGNANYGWILHMISKL----SENGV 347

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK- 414
           A  VL++  +    + SGE  IR+ ++ENDL++ ++ALP  LF+ T I   LW L+  K 
Sbjct: 348 AGFVLANGSMST--STSGEGAIRQKIIENDLVDCMIALPGQLFYTTQIPVCLWFLTKSKQ 405

Query: 415 -----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---- 459
                        +R G+   I+A +  T +    +  + + +    +I   Y +     
Sbjct: 406 ARKVQGHSELNQRKRSGETLFIDARNHGTMV---DRTHKELTETDIAEITQTYHAWRGEP 462

Query: 460 ENGKFS 465
           ++G ++
Sbjct: 463 KDGAYA 468


>gi|167039867|ref|YP_001662852.1| N-6 DNA methylase [Thermoanaerobacter sp. X514]
 gi|300915377|ref|ZP_07132691.1| N-6 DNA methylase [Thermoanaerobacter sp. X561]
 gi|166854107|gb|ABY92516.1| N-6 DNA methylase [Thermoanaerobacter sp. X514]
 gi|300888653|gb|EFK83801.1| N-6 DNA methylase [Thermoanaerobacter sp. X561]
          Length = 552

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 170/518 (32%), Positives = 260/518 (50%), Gaps = 42/518 (8%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNA 111
            +K L   G      +    AG SF N+S + L  L S   +     +  +Y+  FS N 
Sbjct: 1   MKKKLDEAGITNQTAALCNAAGQSFCNSSPFCLRDLTSRAKKQTLKADFIAYLDGFSPNV 60

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV--------------PDRVM 155
           + I + F F + I  +  A +L  + + F    I L P+ V               +  M
Sbjct: 61  QEILDKFKFRNQIDTMIDADILGAVIEKFVSPTINLSPNPVYKDDEKKEIRLPGLDNHTM 120

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             I+E LIRRF  E +E A +  TPRDVV L   L+  P     K++     + YD  CG
Sbjct: 121 GVIFEELIRRFNEENNEEAGEHFTPRDVVELMADLIFVPVADKIKDATY---SCYDGACG 177

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TGG LT A + + +          +   GQE+ PET+A+  + +L++      + D + +
Sbjct: 178 TGGMLTVAQDRLIELAEKAGRKVSIHLFGQEINPETYAIAKSDLLLQG-----QGDQADH 232

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGP------G 327
           I  GSTLS D F   +F + LSNPP+GK W+ D D +  +K+  +               
Sbjct: 233 IGFGSTLSNDQFPTYQFDFMLSNPPYGKSWKVDADKLGGKKDIMDSRFVTNFADDPNFSM 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P+ SDG +LFL++   K++     G R   V + S LF G AGSGES  RR+L+ENDL+
Sbjct: 293 IPRTSDGQLLFLLNNVAKMKKTTELGSRIVEVHNGSSLFTGDAGSGESNARRYLIENDLV 352

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAI+ALP ++F+ T I TY+W+LSN K E R+ K+QLI+AT L + +R N GKK      
Sbjct: 353 EAIIALPENMFYNTGIGTYIWVLSNNKAEHRKSKIQLIDATLLKSPLRKNLGKKNCEFTS 412

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF---ILDKTGLARLEADIT 503
           + RRQILD+Y++ E  ++S++ D   FGY ++ VLRP          DK G   +  ++T
Sbjct: 413 EIRRQILDLYMAFEENEYSKIFDNNEFGYWKVTVLRPAYNEDGTIQKDKKGKPVVNKELT 472

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
             +  P   ++   I     +++ P+       ++  K
Sbjct: 473 DTEQIPF--TYEGGIEAFFEKEVKPFAPDAWIDEKQTK 508



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 116/275 (42%), Gaps = 41/275 (14%)

Query: 409 ILSNRKTEERRGKVQLI-NATDLWTSIR---NEGKKRRIINDDQRRQIL----DIYVSRE 460
           +   +KT E   ++  + N + L+T          +R +I +D    I+    +++ +  
Sbjct: 308 VAKMKKTTELGSRIVEVHNGSSLFTGDAGSGESNARRYLIENDLVEAIIALPENMFYNTG 367

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            G +  +L      +R+ K+        ++D T L         + L   +  F  +I +
Sbjct: 368 IGTYIWVLSNNKAEHRKSKIQ-------LIDATLLKSPLR----KNLGKKNCEFTSEIRR 416

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
            ++     +   E+   +   +NE    KV   +             +       D  G+
Sbjct: 417 QILDLYMAF--EENEYSKIFDNNEFGYWKVTVLRP----------AYNEDGTIQKDKKGK 464

Query: 581 WIPDTNLTEYENVP--YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
            + +  LT+ E +P  Y   I+ +F +EV P  PDA+ID+        +  ++GYEI+F 
Sbjct: 465 PVVNKELTDTEQIPFTYEGGIEAFFEKEVKPFAPDAWIDE--------KQTKIGYEISFT 516

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ++FY+    R L++I A+++ +E +   LL E+  
Sbjct: 517 KYFYKPIQLRTLEEITADIRALEVETDGLLAEIIG 551


>gi|291288454|ref|YP_003505270.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885614|gb|ADD69314.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 525

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 184/475 (38%), Gaps = 55/475 (11%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +  GSA     + +W+ A+ L G+   +++  V+L    L+ +  + +     +    
Sbjct: 1   MAKQNGSANIGFEDKLWQTADKLRGNMDASEYKHVVLGLIFLKYISDSFQAKYDELLATQ 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                   D + +  ++   F+  +E    +L            I    D+A    E  +
Sbjct: 61  ETDYTDPEDRDEY--MSDNVFWVPAEARWESL----IAKAKTPEIGKVLDDAMIAIEKEN 114

Query: 120 ------FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
                    T +R E     L ++      I L         ++  +YE+ I  F S+  
Sbjct: 115 KTLKNILPKTYSRPEIDKSRLGELLDIIGSIPLIDKAQSSKDLLGRVYEYFIGMFASKEG 174

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP+ VV L   ++                 +YDP CG+GG    +     + G
Sbjct: 175 RSGGEFYTPQSVVQLLVEMIEPYKG-----------RVYDPCCGSGGMFVQSEKFAEEHG 223

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +    +  +GQE    T  +    + IR +E+      +   +   T + DL    +
Sbjct: 224 GRLR---DISVYGQEYNATTWRLAKMNLAIRGIEA------NLGAEWADTFTNDLHKDLK 274

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF              +K     R+  G P  ++ +  ++ H  + L     
Sbjct: 275 SDFILANPPFNMSDWGG-------NKLKNDVRWKYGTPPDNNANYAWIQHFIHHL----A 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL++  +      SGE EIR+ ++E DL++ ++ALP  LF+ T I   LW L+
Sbjct: 324 PNGVAGFVLANGSM--SSNTSGEGEIRKNIIEADLVDCMIALPGQLFYTTQIPVCLWFLA 381

Query: 412 NRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             K      ER+G+   I+A  +    R E +  R++  +  ++I   Y +  + 
Sbjct: 382 RNKGKNGHRERKGETLFIDARKMG---RLEDRVHRVLVPEDIQKIASTYHAWRSN 433


>gi|24371979|ref|NP_716021.1| type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
 gi|24345831|gb|AAN53466.1|AE015486_7 type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
          Length = 585

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 147/633 (23%), Positives = 253/633 (39%), Gaps = 73/633 (11%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY---SFYN 82
              ++F   I     L+RL  + +  R  V E YLA G + ++ E+          +FY 
Sbjct: 1   MDASEFKDYIFGMMFLKRLSDSFDEAREQVFEYYLAKGKTQVEAEALASDEDEYDSTFYI 60

Query: 83  TSEYSLSTLG--STNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
                 S L     N    L +    I   + N + +    DF+  I        L  + 
Sbjct: 61  PEVARWSALKDLKHNIGEALNTAAEAIEEHNPNLEGVLVSIDFN--IKNKLSDNKLRDLL 118

Query: 138 KNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +F+   L         ++   YE+LI+ F     +   +F TP +VV L  ALL     
Sbjct: 119 SHFNKYRLRNSDFERPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVALL----- 173

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P     +YDPT G+GG L    N++A   +H++    L  +GQE+   T A+C 
Sbjct: 174 -----KPHAGMRIYDPTAGSGGMLIQMRNYLA---THNENAANLSLYGQEMNLNTWAICK 225

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCLSNPPFGKKWEKDKDAV 312
             M +  ++S        +I++G TL +   T       F   ++NPPF       +D  
Sbjct: 226 MNMFLHGVQS-------ADIRKGDTLREPKHTIDGSLMTFDRVIANPPFSLSKWGKED-- 276

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                  + GRF  G P    G + F+ H+        N  G   +V+    LF G +  
Sbjct: 277 ---CDKDKYGRFPYGTPPKDSGDLAFVQHMIAS----TNDDGMVGVVMPHGVLFRGSS-- 327

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E +IR+ +LE+DL+EA+++LP+ LF+ T I   L I++ +K  ER+GKV  I A   + 
Sbjct: 328 -EKDIRKGILEDDLLEAVISLPSGLFYGTGIPACLLIINKQKPSERQGKVLFIYAELEYH 386

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML---DYRTFGYRRIKVLRPLRMSF 488
             +N    +  +      +I+  + S  E  ++S ++   D R   Y  + + R    S 
Sbjct: 387 EGKN----QNSLRPQDINKIVTTFDSFSEIKRYSAVVKLKDIRDNDY-NLNIRRYADTSP 441

Query: 489 ILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
             +   + A L   I  R++          I + +++        E  +  + +S + + 
Sbjct: 442 PAEIFDVRAILHGGIPVREVEN------DYIQEEILKGFDVSCVFEPKLNHASQSTDQQY 495

Query: 548 LKVKA---SKSFIVAFINAFGRKDPRADPV-TDVNGEWIPDTNLTEYENV--PYLESIQD 601
            + KA   +K  I   +     +    +   TD + E    T L     +   +      
Sbjct: 496 YQFKAEITTKEQIRPLVENSVEQVKAIEDCATDNSAEQTSTTELASVTLIVGQFERWWDK 555

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
           Y   +VS H  DA + +     +   +  +GYE
Sbjct: 556 Y---QVSLHQLDAEMAEAEQVMQ-GYLKELGYE 584


>gi|313618466|gb|EFR90471.1| putatIve type i restriction enzyme hindviip m protein [Listeria
           innocua FSL S4-378]
          Length = 507

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 125/514 (24%), Positives = 196/514 (38%), Gaps = 68/514 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE TG+       +WK A+ L G    +++  V+L    L+ +    E    A+ E+  
Sbjct: 1   MTENTGNIG-FEETLWKAADKLRGSMDASEYKHVVLGLIFLKYISDKFETKFDALIEEGA 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
            F     + E     A   F+   E   S +            I  F D+A  + E  + 
Sbjct: 60  GFEEDRDEYE-----AENIFWVPKEARWSFIKDNAKDPK----IGQFIDDAMILIEKENT 110

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L ++    S I+LH +   D ++  +YE+ + +F S   +G
Sbjct: 111 SLKGVLDKRYARPEIDKRRLGELIDLISTIKLHQNGEKD-LLGRVYEYFLGQFASVEGKG 169

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     ++                 +YDP CG+GG    +   V D   H
Sbjct: 170 GGEFYTPTSIVKTLVDMIEPYQG-----------RVYDPCCGSGGMFVQSEKFVED---H 215

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE+   T  +C   + IR L++      +       T   DL    +  
Sbjct: 216 QGRVENLSIYGQEMNSTTWKLCKMNLAIRGLDA------NLGPHHDDTFHHDLHKTLKAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF           +         R+  G+P   + +  +L H+   L       
Sbjct: 270 FILANPPFNISDWGGNQLTDDV-------RWKFGIPPAGNANYAWLQHMVYHL----APN 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A IVL++  L      S E EIR+ LLE D+++AIVALP  LF+ T I   LWIL+  
Sbjct: 319 GSAGIVLANGSLST--NTSNEGEIRKNLLEEDMVDAIVALPDKLFYSTGIPVSLWILNRN 376

Query: 414 KTEE-----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK----- 463
           K +      R  +V  I+A  L   I    ++ R + ++   +I + Y    N       
Sbjct: 377 KKDNPKYRSREHEVLFIDARQLGEMI---DRRHRELTEEDISKISETYHEWRNIDGEYED 433

Query: 464 ---FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
              F +             VL P R   I D   
Sbjct: 434 IKGFCKSASIEDIREHEY-VLTPGRYVGIEDIED 466


>gi|198284500|ref|YP_002220821.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667614|ref|YP_002427163.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249021|gb|ACH84614.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519827|gb|ACK80413.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 525

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 101/484 (20%), Positives = 186/484 (38%), Gaps = 59/484 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYL 60
           TE T S + L + +W  A+ L G     D+  V+L    L+ +           +RE+  
Sbjct: 10  TEDTTSQS-LESKLWATADKLRGHLDAADYKHVVLGLIFLKYISDRFAQRHEEIIREEAG 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFED 117
            +   + D       A   F+  +    + + +   + ++   I     + +      ++
Sbjct: 69  TYAAEDRDE----YTAEGVFWVPASSRWAVVQTAAKQPDIGKRIDGAMTDIERENPHLKN 124

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                          L ++      I L   +      +  +YE+ + RF S   +   +
Sbjct: 125 ILPKGYARPTLDQRRLGELVDLIGTIGLGTAEHQARDTLGRVYEYFLGRFASAEGKRGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV     +L                 +YDP CG+GG    +   +   G     
Sbjct: 185 FYTPASVVRTLVTMLAPYKG-----------RIYDPCCGSGGMFVQSEKFIEAHGGKVG- 232

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +G+E  P T  + +  + IR +E+D         +   T  KDL    R  Y L
Sbjct: 233 --DISVYGEESNPNTWKLALMNLAIRGIEAD------LGPEAADTFHKDLHPDLRADYIL 284

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF           +         R+  G+P   + +  ++ H+ + L       G A
Sbjct: 285 ANPPFNISDWGGDLLRDD-------KRWQYGIPPTGNANFAWVQHMVHHLAPY----GIA 333

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             VL++  +      SGE EIR+ L+E DL++ +VA+P  LF+ T I   LW L+  + +
Sbjct: 334 GFVLANGSM--SSNTSGEGEIRKNLIEADLVDCMVAMPGQLFYSTQIPVCLWFLAKNRDD 391

Query: 417 ----------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---NGK 463
                     ER G+V  I+A ++        +  R + D+  ++I D Y +     +G+
Sbjct: 392 GRGMTGKELFERTGEVLFIDARNMGFMA---DRTHRELTDEDIQKIADTYHNWRGDGDGE 448

Query: 464 FSRM 467
           ++ +
Sbjct: 449 YADI 452


>gi|317131471|ref|YP_004090785.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
 gi|315469450|gb|ADU26054.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
          Length = 501

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/527 (20%), Positives = 190/527 (36%), Gaps = 61/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  L G+    ++  VIL    L+ +    E   + + +   
Sbjct: 1   MATTNSAETGFEKQIWDAACILRGNMDAAEYKHVILGLIFLKYISDRFEFRYNQLVK--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
               +  + +     +   FY        ++    T       I    DNA    E  + 
Sbjct: 58  --DKNGDEEDRDEYTSQNVFYVPPSARWESI----TAQAHMPEIGKIIDNAMDSIERENK 111

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                   T AR E     L ++   F+ I +        ++   YE+ + RF  +  + 
Sbjct: 112 SLKGVLPKTFARPELDKRRLGEVVDLFTNITIAETGGKMDMLGRTYEYCLGRFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV    A++   D             +YDP CG+GG    +   V    +H
Sbjct: 172 AGEFYTPASVVRTLVAVIKPFDG-----------RVYDPCCGSGGMFVQSAEFVK---AH 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQ+  P T  +C   + I  +++D             T   D     +  
Sbjct: 218 AGNIRNLSVYGQDSNPTTWKLCRMNLAIHGIDAD------LGEAAADTFFNDRHPTMKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF           +         R+  G P   + +  ++ H+        +  
Sbjct: 272 YILANPPFNLSGWGADKLADD-------QRWKYGQPPAGNANFAWMQHMIFH----TSAK 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE  IR+ ++E+DL+E I+A+P  LF+ T I   LW L   
Sbjct: 321 GRIGMVLANGSL--ASQNGGEGAIRKAIVEDDLVEGIIAMPPQLFYTTQIPVSLWFLDRA 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K +   GK+  I+A  + T +    ++ R +  +   +I D + + ENG       F   
Sbjct: 379 KKQP--GKMLFIDARHMGTMV---SRRLREMTKEDISKISDTFEAFENGTLEDEAGFCAA 433

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +       +   +L P R   +  +        +   R  S L + F
Sbjct: 434 VPVEEISKQDY-ILTPGRYVGLAAEEDDCEPFEEKMDRLTSELSEMF 479


>gi|111224380|ref|YP_715174.1| restriction enzyme subunit M (methylation) [Frankia alni ACN14a]
 gi|111151912|emb|CAJ63633.1| Restriction enzyme subunit M (methylation) [Frankia alni ACN14a]
          Length = 806

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 117/575 (20%), Positives = 213/575 (37%), Gaps = 62/575 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++  A+ L G    ++F + I     L+R     E     V  + +
Sbjct: 1   MLGRKLTLPQLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEERVIAQLI 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLG---STNTRNNLESYIASFSD----N 110
           A G S  D E           + Y   E   + L      N  + L   + +  +     
Sbjct: 61  AEGRSRADAEQRATARARYRDTLYVPEEARWARLRDQVHHNVGDELNKALLALEECNNTA 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
            + + +  DF+ T+ +          +  +F+ + L  +      ++   YE+LI  F  
Sbjct: 121 LEGVVQHIDFTRTVGQSRIPDRKLRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFAD 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TPR VV +  AL+           P     +YDP  G+ G L  A + VA
Sbjct: 181 SAGKKGGEFYTPRAVVRMMVALV----------DPKPKMEIYDPCSGSAGMLILARDWVA 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           + G     P  L   GQE      ++    +L+  +          +I+ G TL++ +  
Sbjct: 231 EHGGD---PRDLRLAGQEYNGGVWSISKMNLLLHGI-------PDADIRNGDTLAEPMHV 280

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +RF   LSNPPF   + ++    E         R+G          ++F+ H+  
Sbjct: 281 SGGELERFDRVLSNPPFSLNYSREGMERENRF------RWGWAPEGGKKADLMFVQHMVA 334

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G AA V+    LF G     E +IR  LL +D+IEA++ L  +LF+ T I 
Sbjct: 335 VLRA----NGVAATVMPHGVLFRGGT---ERDIRTALLNDDVIEAVIGLAPNLFYGTGIP 387

Query: 405 TYLWILS--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
             + +L     K  ER GKV  INA   + + R     +  +  +   +I+  Y    + 
Sbjct: 388 ACVLVLRAPGAKPAERAGKVLFINADAEFRAGRA----QNYLMPEHVEKIVAAYREFTDI 443

Query: 462 GKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDI 518
             +++++  D    G   + + R    +   +   + A L   +   +++     F    
Sbjct: 444 PGYAKVVTRDELRAGGDNLNIRRYADNAPPPEPQDVRAHLHGGVPRAEVTAKANLFAAHG 503

Query: 519 LKP---MMQQIYPYGWAESFVKESIKSNEAKTLKV 550
             P    + +   Y       ++ ++    +   V
Sbjct: 504 FDPGAVFVDRDANYLNFADVTRDDLRRLVEEHPGV 538


>gi|312875021|ref|ZP_07735039.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089416|gb|EFQ47842.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2053A-b]
          Length = 502

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 103/528 (19%), Positives = 205/528 (38%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  +A+     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L       GE EIR+ ++E+DLIE I+++P+ LF+   ++  LW ++ 
Sbjct: 322 NGKIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISMPSKLFYSVTLSVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A  +   +    +K R   D+  +++ + + + +NG       F  
Sbjct: 380 DK--KQKGKTLFIDARHMGHMV---DRKHRDFTDEDIQKLANTFEAFQNGTLEDKKGFCS 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   +    +   VL P R   I ++        +   R  S L + F
Sbjct: 435 VATIQDIAKQDY-VLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSEMF 481


>gi|328950634|ref|YP_004367969.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450958|gb|AEB11859.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Marinithermus hydrothermalis DSM 14884]
          Length = 524

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 121/550 (22%), Positives = 210/550 (38%), Gaps = 71/550 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L  ++W+ A  + G      F   ILP   L+RL    E     + E+Y     +   
Sbjct: 6   NTLETWLWEAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDELERLAEEYGDRETAEQI 65

Query: 69  LESFVKVAGY---------SFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKA 113
           +E   + AG           FY         + +           +    +A  +   + 
Sbjct: 66  IED--ERAGGTISRGRGSVRFYIPENARWPRIRAHGRAGLGQFLTDAVRAVARENPRLQG 123

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +  DF++T    R+     L ++    S   L    V   ++   YE+L+R+F     
Sbjct: 124 VIDLVDFNATAAGQRIVPDEYLARLVDVLSHHRLGLQDVEPDILGRAYEYLLRKFAEGQG 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN-----H 226
           + A +F TPR+V  L   +L           P    T+YDP CG+GG L          H
Sbjct: 184 QSAGEFYTPREVAVLMARIL----------EPEPGMTVYDPACGSGGLLIKCHLRLLETH 233

Query: 227 VADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                 H  +PP    L  +GQE+ P T A+     +I  +E+D         + G T+ 
Sbjct: 234 GEQQNGHRCLPPEHAPLQLYGQEINPATFAMARMNAVIHDMEADI--------RLGDTMR 285

Query: 284 KDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              F        RF   ++NP + + +  +       ++N    RF  G P  S     +
Sbjct: 286 NPAFKDASGRLMRFDLVVANPMWNQIFPTEV------YENDPYERFAFGTPPASTADWGW 339

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPT 395
           L H+   L    +  GR A+VL +  +  G    G   E +IR+  +E DLIEA+V LP 
Sbjct: 340 LQHMLASL----SDTGRMAVVLDTGAVSRGSGTQGSNRERDIRKAFVEADLIEAVVLLPE 395

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T     + +++ RK     G++ LINA+ L+   R +      + ++    I  +
Sbjct: 396 NLFYNTTAPGIILVVNRRK--RHPGEILLINASKLFAKGRPK----NYLAEEHIETIARL 449

Query: 456 YVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y   +     S ++           +  P R     D+  +  LE  +   + +   ++ 
Sbjct: 450 YHEWKAEEGLSAIITNDEAARNDYNLS-PSRYVASNDQEEVLPLEEAVVLLREAEEERAD 508

Query: 515 WLDILKPMMQ 524
               L   + 
Sbjct: 509 ADRKLNEALH 518


>gi|147920566|ref|YP_685637.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
 gi|110621033|emb|CAJ36311.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
          Length = 499

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/522 (22%), Positives = 217/522 (41%), Gaps = 58/522 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   +  ++   +W+ A+ L G     D+   I     L+RL    E     + ++  
Sbjct: 1   MSEK-LTFETMKAKVWEAADILRGSIDSADYKNYIFGMLFLKRLSDVFEEEAEKIEKETG 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDN---AKAIF 115
               +  D +       + F+   +   S L   S+N  + L     +  D     + + 
Sbjct: 60  DKDAAWNDPDE------HQFFVPEKARWSELKKSSSNIGDKLNKACEAIEDKNNVLEGLL 113

Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSE 172
              DF++      K     L ++ ++FS I + + D     ++  +YE+LI +F  +  +
Sbjct: 114 ASIDFNTDKLGEPKQRDATLSQLIQHFSKIPMRNSDFAEPDMLGRVYEYLIEKFADDAGK 173

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV L   LL           P     + DPTCG+GG L ++ ++V   G 
Sbjct: 174 KGGEFYTPRMVVKLIVELL----------EPKEGMRICDPTCGSGGMLIESAHYVEQHGG 223

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR- 291
           + K    L   GQE    T  +C   M++          +  NI++G T+          
Sbjct: 224 NSKN---LSLFGQEKNIGTWGICKMNMVLHG-------YVDVNIEKGDTIRDPKHVKDGQ 273

Query: 292 ---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   ++NPPF       +     E +    GRF  G+P  + G   F+ H+   L  
Sbjct: 274 LMLFDRVIANPPFSLDKWGRE-----EAEKDGFGRFSYGIPPKTKGDFAFVEHMIATL-- 326

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N  G+  +V+    LF G A   E +IR  ++++DLIEAI+ LPT+LF+ T I   + 
Sbjct: 327 --NSKGKLGVVVPHGVLFRGAA---EGKIREGIIKDDLIEAIIGLPTNLFYGTGIPAAIL 381

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           I++  K  ER+GK+ ++NA D +   +N    +  + D    +I+       +  K+SR+
Sbjct: 382 IMNRDKPAERKGKIIIVNAVDEYQEGKN----QNYLRDQDIEKIVRAVREYIDIDKYSRI 437

Query: 468 LDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           +           + + R +  +       +  +  ++   ++
Sbjct: 438 VSLDEIKENDYNLNISRYVDTTMEEPPIDIKAVLKELKEIEV 479


>gi|71275992|ref|ZP_00652274.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71899062|ref|ZP_00681227.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71163225|gb|EAO12945.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71731175|gb|EAO33241.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 524

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/578 (20%), Positives = 226/578 (39%), Gaps = 89/578 (15%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           T   G+  +L     ++K A+ L G+ + +D+  V L    L+ +  A E   S +  + 
Sbjct: 7   TTKNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHSELLAED 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
                   +      +A   F+   +   S L +   +       +     I   + + K
Sbjct: 67  PQAAEDKDEY-----LAHNVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEKDNPSLK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVS 171
            +         + ++    +L ++    SGI L+ +      ++  +YE+ + +F     
Sbjct: 122 HVLPKDYARPALNKV----MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQFAGAEG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV +   +L           P     +YDP CG+GG    +   V + G
Sbjct: 178 KRGGEFYTPRSVVRVLVQML----------EPYSG-RVYDPCCGSGGMFVQSEKFVLEHG 226

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + +R ++SD R +         +   D     +
Sbjct: 227 GRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIRWNNEG------SFHNDALRDLK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF               +  E  R+  G+P   + +  +L H+ + L     
Sbjct: 278 ADYILANPPFNISDWGG-------DRLREDVRWKFGVPPAGNANYAWLQHIYHHL----A 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL++  + +  +G  E EIR  ++E D+++ +VA+P  LF+ T I   LW L+
Sbjct: 327 PNGTAGVVLANGSMSSNHSG--EGEIRTHMIEADIVDCMVAMPGQLFYSTQIPACLWFLA 384

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--- 463
             K       +RRG+V L++A  L   +    + RR + D+Q ++I D Y +    +   
Sbjct: 385 RNKNPGKGLRDRRGQVLLMDARALGVLV---DRTRRELTDEQIQKIADTYHAWRGEQGAA 441

Query: 464 -------FSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                  F +   + D R  GY    VL P R   I              + K +   + 
Sbjct: 442 DYADVAGFCKSATLEDIRKHGY----VLTPGRYVGI------------KGFVKDNESFEE 485

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
               +   + +Q+      ++ ++E +K      L++K
Sbjct: 486 RMTRLTTELGEQLAESATFQTTMREQLKLIGFPILELK 523


>gi|303326058|ref|ZP_07356501.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863974|gb|EFL86905.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 535

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/570 (21%), Positives = 217/570 (38%), Gaps = 81/570 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MTE   +   L   +W  A+ L G     DF   +L F  LR L    E   +  +  +Y
Sbjct: 1   MTE--QNQKQLGAVLWSIADTLRGAMDADDFRDYMLAFLFLRYLSDNYEVAAKKELGNEY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
                        + +  +  D+  F K+     +     EY   ++             
Sbjct: 59  PDAGTQPGVTPLRIWYAANQADVPDFEKLMRRRVHYVIKPEYLWDSIAEMARTQNGELLK 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T  +   YI   SF    + +F + + +S       A    K+C     I   L   +  
Sbjct: 119 TLQDGFKYIENESFDSTFQGLFSEINLTSEKLGKRNAERNEKLCDIIKKIAEGLSSFSSE 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP ++  + + ++              + ++ D
Sbjct: 179 GDTLGDAYEYLIDKFAAGSGKKAGEFYTPHEISSILSGIVTLDSQDPGTGPKKHLASVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRGRMGAQG-------IGKIYGQEKNVTTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL+ D    +         F   ++NPPF  +W   +         GE  R
Sbjct: 287 SEFEIFHGDTLTNDWDMLRETNPAKKPYFDAVVANPPFSYRWNPSEAL-------GEDVR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IRR LL
Sbjct: 340 FKNYGLAPKSAADFAFLLHGFHYLKRE----GTMAIILPHGVLFRGGA---EERIRRKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+  I+ I+ LP +LF+ T I   + +L   K   +   V  INA++ +      GK++ 
Sbjct: 393 EDGNIDTIIGLPANLFYSTGIPVCVLVLKKCK---KSDDVLFINASEHFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLE 499
            ++ +  ++I+D Y  R E  ++S+ +           + + R +  +    +  LA + 
Sbjct: 446 RLSTEHIKKIVDTYQFRTEEERYSKCVSMEEISANGYNLNISRYVSTAMPEKEIDLADVH 505

Query: 500 A-----DITWRKLSPLHQSFWLDILKPMMQ 524
                 D   +  +  H +F  ++  P++ 
Sbjct: 506 KKMMAVDAQIKAATEKHNAFLKELGLPLLP 535


>gi|283795955|ref|ZP_06345108.1| ribosomal protein L11 [Clostridium sp. M62/1]
 gi|291076600|gb|EFE13964.1| ribosomal protein L11 [Clostridium sp. M62/1]
 gi|295090949|emb|CBK77056.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 500

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 112/522 (21%), Positives = 190/522 (36%), Gaps = 51/522 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +A      IW  A  L G+   +++  V+L    L+ +    +    A+ E+  
Sbjct: 1   MPDKNTAAIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDEKYKALVEEGD 60

Query: 61  AFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            F     +   E    V   + +        T       ++    I   +   K I    
Sbjct: 61  GFEEDIDEYTSEGIFFVPAGARWRDIAAKAHTPEIGTVIDDAMRAIEKENKRLKDILPKN 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                + +      L  +   F+ I++        ++   YE+ +  F  +  +   +F 
Sbjct: 121 FARPELDK----RRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFF 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  VV     +L                 +YDP CG+GG    +   V +   H     
Sbjct: 177 TPSCVVRTLVEVLKPFKG-----------RVYDPCCGSGGMFVQSAKFVEN---HSGNIS 222

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQ+  P T  +    + IR +E D             T  KD     R  Y ++N
Sbjct: 223 NISIYGQDSNPTTWKLAQMNLAIRGIEPD------LGPYAADTFLKDCHPTLRADYIMAN 276

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF               K  E  R+  G P   + +  +L H+   L       GR  +
Sbjct: 277 PPFNLSDWG-------LDKLKEDQRWKYGTPPAGNANFAWLQHMIYHLAPA----GRIGM 325

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL++  L +     GE EIR+ ++  DL+E IVA+PT LF+ T I   LW ++ +K  ++
Sbjct: 326 VLANGSLSSQS--GGEGEIRKNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQK--KQ 381

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDYRT 472
            GK   I+A  + T +    +K R + D    +I D Y +  +G       F  + D   
Sbjct: 382 SGKTLFIDARKMGTMV---NRKLRELTDADINKISDTYEAFVDGTLENIKGFCAVADTAE 438

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
              +   +L P R   I ++        +   R  S L   F
Sbjct: 439 IEKQNY-ILTPGRYVGIEEQEEDDEPFEEKMTRLTSELSNMF 479


>gi|325110947|ref|YP_004272015.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
 gi|324971215|gb|ADY61993.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
          Length = 560

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 102/472 (21%), Positives = 181/472 (38%), Gaps = 55/472 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T S  S A+ +WK A+ L G     ++  V+L    L+ +  + +  R  +  +  
Sbjct: 1   MNDQTASDLSYADTLWKAADALRGQVDAAEYKHVVLGLLFLKYISDSFQSRRDELEAELT 60

Query: 61  AFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
           + G     LE+ ++      A   F+   E   + L    TR ++ + I           
Sbjct: 61  SDGIKGEQLENLLESRDEYTAERVFWVPPESRWTNLQDQATRPDIATLID--DAILAVER 118

Query: 116 EDFDFSSTIARLE-----KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
           ++ +  S + R       +   L  +    + I  +         +  +YE+ + +F + 
Sbjct: 119 DNPNLKSKLPRDYARRGIEPVKLKGLIDLIADIGFNGTREKARDTLGRVYEYFLGKFAAA 178

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TPR +V +   +L                 +YDP CG+GG    +   V  
Sbjct: 179 EGKLGGEFYTPRSIVRVLVEMLEPYQG-----------RIYDPACGSGGMFVQSEKFVEA 227

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      +   GQE  P T  +    + I  +E+      +   Q   T  K    G
Sbjct: 228 HGGNR---TDVSVFGQESNPTTWRLAHMNLAIHGIEA------NLGPQPADTFLKPQHPG 278

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  + L+NPPF       +             RF  G P + + +  ++ H  + L  P
Sbjct: 279 LQADFVLANPPFNVSDYSGQLLRGD-------KRFSFGDPPVGNANYAWIQHFIHHLAFP 331

Query: 350 P-NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
              GGG A  V+++  L       GE +IRR ++E DL++ IVA+P  LFF T I   LW
Sbjct: 332 NGQGGGVAGFVMANGSL--SSNTGGEGDIRRKIVEADLVDCIVAMPAQLFFTTGIPVCLW 389

Query: 409 ILSNRK------------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            L+  K             E R+G+   I+A  L +      +    + + +
Sbjct: 390 FLTRDKTGKNIRKGTPNRPEGRQGETLFIDARKLGSMQTRTLRVLSGLEEAE 441


>gi|183597752|ref|ZP_02959245.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827]
 gi|188023032|gb|EDU61072.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827]
          Length = 504

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 112/538 (20%), Positives = 210/538 (39%), Gaps = 57/538 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     + + +   +W   +   G    + +   IL    L+ +    +     ++ +Y 
Sbjct: 1   MPHTLINQSEINKAVWNACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKVEELKAEYG 60

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  ++   +SF    G SF++  E        T     L + I   +   K +F+D
Sbjct: 61  DIPELIAEMLESQSFKIPTGSSFWDLYEARFEAGNGTRIDTALHA-IEEANTKLKGVFQD 119

Query: 118 FDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F++     EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   +
Sbjct: 120 ISFNTDKLGDEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + +L          +P    T+ DP CG+G  L      V     
Sbjct: 180 SAGEFYTPAEVSDLLSIIL----------APQEGDTICDPACGSGSLLMKCGKQVQ---K 226

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
           +         +GQE    T ++    M +   +       +  I+ G T+          
Sbjct: 227 NFNGSKKYALYGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDANG 279

Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    +NPPF       +DA     +N   GRF  G+P  + G   F+ H+   L+
Sbjct: 280 GLLHFDVVTANPPFSLDKWGHEDA-----ENDHFGRFRRGVPPKTKGDYAFISHMIETLK 334

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +V+    LF   +   E +IR+ L+E +L++A++ LP  LFF T I   +
Sbjct: 335 ---PQTGRMGVVVPHGVLFRASS---EGKIRQQLIEENLLDAVIGLPEKLFFGTGIPAAI 388

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            I    K ++    V  I+A+  + S +N    + ++ ++  ++I+D Y +RE+  K++ 
Sbjct: 389 LIFKKHKDDK---NVLFIDASREFKSGKN----QNVLTEENIQKIVDTYKARESVDKYAY 441

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
           +            +  P  +    ++  +     R E      +L+ L       + +
Sbjct: 442 LATLEEIAENDFNLNIPRYVDTFEEEEEIDLMAVREERLALQNELADLEAEMEGYLKE 499


>gi|253577074|ref|ZP_04854396.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843568|gb|EES71594.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 507

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/525 (21%), Positives = 195/525 (37%), Gaps = 67/525 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A+ L G     ++  V+L    L+ +  A E    A++ +  A      +  
Sbjct: 8   FEEKLWSMADKLRGSMDAAEYKHVVLGLLFLKYVSDAFEEKYEALKNEPYADPEDRDEY- 66

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
               VA   F+   E   S +     +       +N    I   + + K +         
Sbjct: 67  ----VAENIFWVPKEARWSHIKDNAKKPEIGQTIDNAMIAIEKENPSLKGVLPKDYARPA 122

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +      L ++   FS      ++    V+  +YE+ + +F S   +   +F TP  V
Sbjct: 123 LDK----TRLGEVIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPNSV 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 +YDP CG+GG    +   V +   H      +  +
Sbjct: 179 VRLLVEMIQPFKG-----------RVYDPCCGSGGMFVQSEKFVEE---HQGRIGDIAIY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +C   + IR ++       +       T   DL    +  Y L+NPPF  
Sbjct: 225 GQESNPTTWKLCKMNLAIRGIDG------NLGEHHADTFHNDLHKNLKADYILANPPFNI 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                +   E         R+  G+P   + +  ++ H+ NKL       G A  VL++ 
Sbjct: 279 SDWGGERLTED-------ARWTYGVPPAGNANYAWIQHIVNKL----APSGVAGFVLANG 327

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EERR 419
            +    + + E EIR  L+  DL++ IV LP  LF+ T I   LW ++  K      +RR
Sbjct: 328 SMST--STTAEFEIRSKLVNADLVDCIVTLPGQLFYSTQIPVCLWFIAKNKAPKGFRDRR 385

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGK-FSRMLD 469
           G++  I+A  +   +    +  R ++ +  R+I D Y +          E+ K F +  +
Sbjct: 386 GEILFIDARKMGHMV---DRTHRELSTEDIRKIADTYHAWRGQAEAGTYEDVKGFCKAAE 442

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                     +L P R   I D    +    D   R  + L + F
Sbjct: 443 LAEVQEHEY-ILTPGRYVGIEDVEEDSEPFEDKMARLTAELGEQF 486


>gi|146305600|ref|YP_001186065.1| type I restriction-modification system, M subunit [Pseudomonas
           mendocina ymp]
 gi|145573801|gb|ABP83333.1| type I restriction-modification system, M subunit [Pseudomonas
           mendocina ymp]
          Length = 908

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/545 (21%), Positives = 215/545 (39%), Gaps = 74/545 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     + A L N +    +DL G+   +++ + I     L+R     +  R  +R++  
Sbjct: 1   MASAKLTLARLENLLLTACDDLRGNMDASEYKEYIFGMLFLKRASDLFDQRRDEIRKEGK 60

Query: 61  AFGGSNID----LESFVKVAGYSFYNTSEYSLSTLG------------------STNTRN 98
           A G S+ D    LE   + +G  F+       +                      T    
Sbjct: 61  AAGLSDDDIKANLEDPDQYSGKYFFVPERARWNDGWVDEKWNVHPALKHVKENVGTALNK 120

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMS 156
            LE+   +  +  + + +  +F+  I +       L    +NF  I L  +      ++ 
Sbjct: 121 ALEALEEANPEALQDVLKHINFNKKIGQNTLDDDTLVNFIQNFEKIPLRDEDFEFPDLLG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             YE LI+ F     + A +F TP +VV +   +            P    ++YDPT G+
Sbjct: 181 TAYEWLIKHFADSAGKKAGEFYTPAEVVRICVEIC----------DPQEDMSVYDPTVGS 230

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG L  A +++ +CG+       L  +GQE    T ++C   ML+  +           I
Sbjct: 231 GGMLIQARDYLRECGADA---AELALYGQEKMGTTWSICKMNMLLHGIS-------HAVI 280

Query: 277 QQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK 330
           +Q  TL +     +     RF   L+NPPF + +      ++K+ K+   GRF      K
Sbjct: 281 RQQDTLREPQHQAEDGNLMRFDRVLANPPFSQNY------IKKDIKHP--GRFPVWMPEK 332

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                ++F+ H+   L+      GR A V+    LF    G+ E E R++ ++   +EA+
Sbjct: 333 GKKADLMFVQHMLAVLK----HDGRMACVMPHGVLFR---GAEEREARKYFIDRGYLEAV 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP++LF+ T I   + +L+     ER+  V  IN    +     EGK +  +  +   
Sbjct: 386 IGLPSNLFYGTGIPACILVLNKAGAAERK-HVLFINGDREY----REGKAQNYLRPEDID 440

Query: 451 QILDIYVSR-ENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRK 506
           +I+  Y +  E   +++ +             + R +  +   +   + A L   +   +
Sbjct: 441 KIVHAYRAGLEIPGYAQPVPVEAICAEDYNCNIRRYVDNAPPAEPHDVRAHLHGGVPVTE 500

Query: 507 LSPLH 511
           +  L 
Sbjct: 501 IDALE 505


>gi|84624919|ref|YP_452291.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368859|dbj|BAE70017.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 604

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 201/475 (42%), Gaps = 64/475 (13%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S + L  A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+  +   
Sbjct: 92  KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 148

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                   +    +A   F+   +   S L +   +       ++    I   +++ K +
Sbjct: 149 --DPPAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 206

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+     P  V+  +YE+ + +F     + 
Sbjct: 207 LPKDYARPALNKV----MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKR 262

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VVH    ++           P     +YDP CG+GG    +   V + G  
Sbjct: 263 GGEFYTPRSVVHTLVEMI----------EPYKG-RIYDPCCGSGGMFVQSEKFVNEHGGR 311

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +C   + +R ++SD R +         +  KD     +  
Sbjct: 312 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNNEG------SFHKDELRDLKAD 362

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +   +         R+  G P + + +  +L H+ + L    +  
Sbjct: 363 FILANPPFNISDWGGERLRDDV-------RWAFGPPPVGNANYAWLQHIVHHL----SPH 411

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + +  SGE +IR+ ++E  +++ +VALP  LF+ T I   LWIL+  
Sbjct: 412 GFAGVVLANGSMSSQQ--SGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLWILAKD 469

Query: 414 ---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                    K  +RRG++  I+A ++ T +    + RR ++D +  +I   Y + 
Sbjct: 470 RSNGLVLQSKLRDRRGEILFIDARNMGTLV---DRTRRELSDAEVARIAATYHAW 521


>gi|256833459|ref|YP_003162186.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603]
 gi|256686990|gb|ACV09883.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603]
          Length = 521

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/539 (20%), Positives = 199/539 (36%), Gaps = 72/539 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L   +W+ A+ L G+ + +++  V+L    L+ +    E  R+ +  +  A G     
Sbjct: 11  KTLEQTLWEAADKLRGNQEPSEYKHVVLGLVFLKYISDRFEERRATLEAELAAEGIKPER 70

Query: 69  LESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFE 116
           L  F++          F+         + S   +       +     I   +   + +  
Sbjct: 71  LPDFLEDRDEYTSHNVFWVPELARWGYIQSVAKQPEIGQQIDQAMDLIEKENPTLRGVLP 130

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEV-SEG 173
                  + +      L ++      I      D   D V+  +YE+ + +F  +   + 
Sbjct: 131 RNYGRDGLDK----RRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGKETGKD 186

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  F TPR VV     +L                 +YDP  G+GG    +   V   G  
Sbjct: 187 AGAFYTPRSVVKTLVEMLEPYQG-----------RVYDPAAGSGGMFVQSAEFVKAHGGK 235

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R +E+D         +   + + DL    R  
Sbjct: 236 R---TDISVYGQEFTDTTWKLSKMNLALRGIEAD------MGPRSADSFTDDLHPDLRAD 286

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF      D        K     R+  G P   + +  ++ H    L    +  
Sbjct: 287 FVIANPPFNVSDWWDA-------KLEGDPRWQYGTPPQGNANFAWVQHFIYHL----SPK 335

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  VL++  L +     GE E+RR L+E DL++ IVA+P  LFF T I   LW +S  
Sbjct: 336 GTAGFVLANGSLSSKS--GGEGEMRRKLVEADLVDCIVAMPDKLFFNTGIPVALWFVSKA 393

Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-------- 461
           +      ERR +V  I+A  L T    E ++ R++ DD   +I D Y +  N        
Sbjct: 394 RHGNGHRERRSEVLFIDARKLGTM---ESRRLRVLTDDDIAKIADTYHAWRNHDGGYEDV 450

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             F++             VL P R     +    A ++ +    K+  L +  + +  +
Sbjct: 451 PGFAKAASLEEIAKHDY-VLTPGRYVGAAE----AEVDDEPIDEKIERLTKELFAEFER 504


>gi|126173066|ref|YP_001049215.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125996271|gb|ABN60346.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 515

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 128/532 (24%), Positives = 207/532 (38%), Gaps = 69/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW  A ++ G     DF + +L     R +    E   +   E   
Sbjct: 1   MTSL-QQRAELQRQIWAIANEVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESIN 59

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             G  + D       E  +K  GY  Y  S+   +   + N   NL + +A+        
Sbjct: 60  YAGMFDDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANANKNENLNTDLAAIFAAIENS 118

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                   + K +F DFD +S         K   L  + K  +G+ +   +   + +  +
Sbjct: 119 ANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLNITQFEDNENDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQEL   T+ +    M +  +  D       NIQ
Sbjct: 231 SLLLQAKKHFDAHIIEEG------FFGQELNHTTYNLARMNMFLHNINYDK-----FNIQ 279

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL +  F   K F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 280 LGDTLIEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALNYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  KT+      Q I+A++L+    N       ++++   QI+ 
Sbjct: 388 PNLFFGTTIAVNILVLSKHKTDTT---TQFIDASNLFKKETN----NNTLSNEHIEQIIK 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++ S+EN   F++ +D            V   +        T +  L A++ 
Sbjct: 441 VFASKENVEHFAKCVDLDGVAANDYNLSVSSYVEAKDNRVVTNITELNAELK 492


>gi|84387345|ref|ZP_00990365.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01]
 gi|84377794|gb|EAP94657.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01]
          Length = 505

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/533 (21%), Positives = 206/533 (38%), Gaps = 46/533 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   +   +W   +   G    + +   IL    L+ +    +     + ++Y 
Sbjct: 1   MPHTPINQDDINKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKVDELAKEYG 60

Query: 61  AFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  + ++ +SF    G +F++  E        +     L +   +     K +F+D
Sbjct: 61  DEPELIAAMMETQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQD 120

Query: 118 FDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F++     EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   +
Sbjct: 121 ISFNTDKLGDEKQKNDILRHLLEDFGKETLNLRPSRVGTLDVIGNAYEYLIKHFAAGSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + +L           P    T+ DP CG+G  L      V +  +
Sbjct: 181 SAGEFYTPPEVSDLLSIIL----------EPQQGDTICDPACGSGSLLMKCGKQVQNNFA 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K        GQE    T ++    M +   E + R +    I+      KD      F
Sbjct: 231 GSK---QYALFGQEAIGSTWSLAKMNMFLHG-EDNHRIEWGDTIRNPKLQDKDG-GLLHF 285

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
               +NPPF       +DA      N   GRF  G+P  + G   F+ H+   L+     
Sbjct: 286 DVVTANPPFSLDKWGFEDA-----GNDHFGRFRRGIPPKTKGDYAFISHMIETLK---PQ 337

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR  +V+    LF   +   E +IR+ L++ +L++ ++ LP  LFF T I   + +   
Sbjct: 338 TGRMGVVVPHGVLFRASS---EGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILLFKK 394

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYR 471
           +K +    KV  I+A+  + S +N    +  +  D  ++I+D Y +RE   K+S +    
Sbjct: 395 QKDD---NKVLFIDASREFKSGKN----QNQLTPDNIQKIVDTYKARETTDKYSYLASLE 447

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                   +  P  +    ++  +     R E      +L+ L       + +
Sbjct: 448 EIAENDYNLNIPRYVDTFEEEAEIDLVAVRTERLALQTELADLEAEMAGYLEE 500


>gi|238755001|ref|ZP_04616349.1| Type I restriction-modification system methyltransferase subunit
           like protein [Yersinia ruckeri ATCC 29473]
 gi|238706705|gb|EEP99074.1| Type I restriction-modification system methyltransferase subunit
           like protein [Yersinia ruckeri ATCC 29473]
          Length = 534

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 103/513 (20%), Positives = 205/513 (39%), Gaps = 55/513 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +    +       +W  A  L G  + +++  V+L    L+ +    E  R  + +    
Sbjct: 4   SPTKKAGKGFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRKQLIDNG-- 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
              + +D++ F +     F+   E   S + +   ++++        S I   + +    
Sbjct: 62  -QEAFVDMDVFYQQ-DNVFFLPPEARWSFVKARAKQDDIAVIIDTALSTIEKRNASLTGA 119

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     +++   L    +N   +    D   + ++  +YE+ + +F +   +G 
Sbjct: 120 LPDNYFSRQGLEVKRLASLIDSIENIDTLANESDLTEEDLVGRVYEYFLGKFAASEGKGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ VV L   +L                 +YDP CG+GG    ++  +    SH 
Sbjct: 180 GEFYTPKAVVTLLAEMLEPYQG-----------KIYDPCCGSGGMFVQSLKFIE---SHK 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQEL   T+ +    + +R L        +   +   T   D     +  +
Sbjct: 226 GKSRDIAIYGQELTSTTYKLAKMNLAVRGLSG------NLGERAADTFFADQHPDLKADF 279

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K  +++  +  + +       G   P   + +  +++H+ +KL    +  G
Sbjct: 280 IMANPPFNLKDWRNEAELTNDPRFA-----GFRTPPTGNANYAWILHMLSKL----SEDG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  VL++  +      SGE EIR+ L+E+D IE ++ALP  LFF T I   LW +S  K
Sbjct: 331 TAGFVLANGSM--SSNTSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKSK 388

Query: 415 T-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                    +RRG+   I+A +L T +    + ++ +  +    I D + +  + + S +
Sbjct: 389 KANPQYGYRDRRGETLFIDARNLGTMV---SRTQKELTKEDIATIADTFHAWRSSE-SEL 444

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              R      I V +    +       L  ++A
Sbjct: 445 --KRRIESNEIGVEQYQDQAGFCKVATLDDMKA 475


>gi|262198182|ref|YP_003269391.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium
           ochraceum DSM 14365]
 gi|262081529|gb|ACY17498.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium
           ochraceum DSM 14365]
          Length = 860

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 182/491 (37%), Gaps = 56/491 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--- 58
            +   +   L   ++  A+ L G    ++F + I     ++R     E  R  +  +   
Sbjct: 18  AQQPLTLGQLERHLYAAADILRGKMDASEFKEYIFGMLFIKRCSDEFEARREEILAEQQA 77

Query: 59  -YLAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFSDN---AKA 113
              +   + +  E   + A   F   S  ++  +    +    L + +A+  D       
Sbjct: 78  AGASAEAAALAAEQPERYARSFFVPPSARWAQVSALERDLGTGLNAALAALEDTNPALHG 137

Query: 114 IFEDFDFSSTIARLEKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171
           +    DF+ T+ +        +    +F    L         ++   YE+LI  F     
Sbjct: 138 VLRHIDFNRTVGKSRMPDKRLRALVAHFGRHRLRNRDFEFSDMLGAAYEYLIGEFADSAG 197

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV L   L            P     +YDP  G+GG L  A  +V + G
Sbjct: 198 KKGGEFYTPRPVVRLIVRL----------SDPRPGMRVYDPCSGSGGMLILARQYVQEHG 247

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
                   L  +GQE       +    ML+  +          +I+ G TL + L     
Sbjct: 248 GDAG---SLGLYGQEDNGGVWTISQMNMLLHGVSD-------ADIRNGDTLHEPLHIDPA 297

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                RF   ++NPPF + +  D+  +       E  RFG           ++  H+   
Sbjct: 298 SGELLRFDRIITNPPFAQNYSPDELPL------PERFRFGMCPHAGKKADWMYAQHMLAA 351

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L      GG A  V+    LF    G  E  IR  +LE DL+EA++ LP +LF+ T+I  
Sbjct: 352 L----APGGMAVTVMPHGVLFR---GGVEQAIRSRVLEADLVEAVIGLPPNLFYGTSIPA 404

Query: 406 YLWILS--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
            + +L     K  ER+G+V  ++A+D + + R     +  +  +   +I   +    E  
Sbjct: 405 CVLVLRAPEAKPPERQGRVLFVDASDEFHAARA----QNHLQPEHVEKIATAFERFAEVP 460

Query: 463 KFSRMLDYRTF 473
            ++ ++     
Sbjct: 461 GYASVVSVDEI 471


>gi|257094282|ref|YP_003167923.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046806|gb|ACV35994.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 539

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 102/486 (20%), Positives = 187/486 (38%), Gaps = 64/486 (13%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
                S+A+L     +W  A+ L  +    ++  V+L    L+ +    +   + +    
Sbjct: 6   ARKNDSSANLGFEAKLWLAADKLRNNMDAAEYKHVVLGLIFLKYISDTFDEHHARLVAGS 65

Query: 58  --KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
             K   + G+N + E     A   F+   +   + + S          I    D+A    
Sbjct: 66  VAKSGDYEGANPEDEDEYLAA-NVFWVPVDARWAQIQSRAKL----PSIGKDVDDAMVAL 120

Query: 116 EDFD------FSSTIARLE-KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFG 167
           E  +       +    R +     L ++      I+L    +    ++  ++E+ + +F 
Sbjct: 121 ERDNPRLKGALNKNYGRADLDKHRLGELIDLIGSIQLADVASRSKDLLGRVFEYFLTQFA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  VV +   +L                 +YDP CG+GG    +   V
Sbjct: 181 SAEGKNGGQFYTPSCVVRVLVEMLAPYKG-----------RIYDPCCGSGGMFVQSEKFV 229

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  + +  + +R +E+D        ++   T  +DL 
Sbjct: 230 EAHGGQLG---DISIYGQESNPTTRRLAIMNLALRGIEAD------FGVENADTFRRDLH 280

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  Y L+NPPF               +  +  R+  G+P   + +  ++ H  + L 
Sbjct: 281 PDLRADYVLANPPFNDSDW---------FRKDDDVRWQFGVPPKGNANFAWVQHFIHHLA 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G A  VL++  + + ++G  E +IR+ L+E DL++ +VALP  LF+ T I   L
Sbjct: 332 PA----GFAGFVLANGSMSSNQSG--EGDIRQQLIEADLVDCMVALPGQLFYSTQIPVCL 385

Query: 408 WILSNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           W L+  K         ERR +   I+A  L T I    +  R + D   ++I+  Y +  
Sbjct: 386 WFLTKSKAAEAKRHFRERRKQTLFIDARKLGTLI---DRVHRELTDADLQKIVTTYHAWR 442

Query: 461 NGKFSR 466
             + S 
Sbjct: 443 GDRVSH 448


>gi|205372127|ref|ZP_03224943.1| type I restriction-modification system DNA methylase [Bacillus
           coahuilensis m4-4]
          Length = 506

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 112/541 (20%), Positives = 191/541 (35%), Gaps = 60/541 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A+ L G     ++  V+L    L+ +  A E   + +     A      +  
Sbjct: 8   FEEQLWSMADKLRGSMDSGEYKNVVLGLLFLKYVSDAFEERHAELEADEYADSEDRDEY- 66

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST-IARLEK 129
               V    F+   E   S +     +      I    D A    E  + S   +   + 
Sbjct: 67  ----VMDNIFWVPKEARWSYIKDNAKKPE----IGQIIDKAMIAIEKENASLQGVLPKDY 118

Query: 130 AGLLYKICKNFSGIELHPDTVPD------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           A       +    I+L    V D       V+  +YE+ + +F S   +   +F TP  V
Sbjct: 119 ARPALDKVRLGETIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPSSV 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   +L                 +YDP CG+GG    +   V +   H      +  +
Sbjct: 179 VRLLVEMLEPYKG-----------RIYDPCCGSGGMFVQSEKFVEE---HQGKLGDIAVY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +C   + IR ++       +       T   DL  G +  Y L+NPPF  
Sbjct: 225 GQESNPTTWKLCKMNLAIRGIDG------NIGTHNADTFHNDLHKGLKADYILANPPFNI 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K        E         R+  G P   + +  ++ H+ +KL       G A  VL++ 
Sbjct: 279 KDWGGDKLREDV-------RWQYGTPPTGNANYAWIQHMISKLAPA----GTAGFVLANG 327

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERR 419
            +      SGE EIR+ L+E DL+E IV LP  LF+ T I   +W +S  K       R 
Sbjct: 328 SM--SSNTSGEGEIRKNLIEADLVECIVTLPGQLFYSTQIPVCIWFVSKNKSKTGKRTRN 385

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           G++  I+A  L   +    +  +   D    +I   + +          D + F  +   
Sbjct: 386 GEILFIDARKLGFMV---DRTHKEFTDVDIEKITKAFHTWRGTLGEAYEDVQGF-CKAAM 441

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           +       +IL       LE        +   ++  + +   + +Q       E  ++ +
Sbjct: 442 LEEVRNNDYILTPGRYVGLEE---VEDDTEPFEAKIVRLTTELSEQFEKSKELEDQIRRA 498

Query: 540 I 540
           +
Sbjct: 499 L 499


>gi|288573656|ref|ZP_06392013.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569397|gb|EFC90954.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 527

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 109/523 (20%), Positives = 202/523 (38%), Gaps = 43/523 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +          L   G +
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEE----LADALKESGGD 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSS 122
            +  +  +   +     + +  +     N     ++ L +   +  D    +F D  +++
Sbjct: 59  QEYAALPEQHRFHIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQWTN 118

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    L  ++ ++FS   L     P+  +   YE LI++F  +    A +F T R 
Sbjct: 119 K-DRLPDHMLR-ELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRT 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L  
Sbjct: 177 VVHLMTEIL----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRN---LRL 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE    T A+    + +  +E      + +    G+    +     +F   L+NPP+ 
Sbjct: 224 FGQERNLLTSAIGRMNLFLHGVED---FRIVRGDTLGNPAFVEGDRLMQFDVVLANPPYS 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K   D+DA          GR   G P        F  H+   ++      GR AI+   
Sbjct: 281 IKQW-DRDA----WSADPWGRSLYGTPPQGRADYAFWQHIIKSMKAK---SGRCAILFPH 332

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +ERR KV
Sbjct: 333 GVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKERRNKV 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVL 481
             INA +  T  R +      + +D  ++I+  Y +  +   F+R++       +   + 
Sbjct: 389 LFINAVNEVTRERAQS----FLTNDHIQRIVAAYKAFGDEDGFARVVCNDEVREKGSNLS 444

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            PL +               ++ ++     Q   +++ + M  
Sbjct: 445 IPLYVRSDNGNGNSNGAAETVSLKQAISNWQQSSMELRESMDD 487


>gi|302343960|ref|YP_003808489.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfarculus baarsii DSM 2075]
 gi|301640573|gb|ADK85895.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfarculus baarsii DSM 2075]
          Length = 528

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 113/487 (23%), Positives = 197/487 (40%), Gaps = 45/487 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           S + L +++W  A  L G     D+ + I P    +RL     E    A+ E       +
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEELADALEESGGDQEYA 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            +  +   ++   + +  +   +  +G    ++ L +   +  D    +F D  +++   
Sbjct: 63  ALPEQHLFQIPEDAHWKATRTKVKNVGKA-IQDALRAIETANPDTLYGVFGDAQWTNK-D 120

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL    L  ++ ++FS   L     P+  +   YE LI++F  +    A +F T R VVH
Sbjct: 121 RLPDRMLR-ELIEHFSSQTLSLANCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRTVVH 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T +L           P    ++YDPTCG+ G L  A+ H+       +    L   GQ
Sbjct: 180 LMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRN---LRLFGQ 226

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPF 301
           E    T A+    + +  +E          I +G TL+   F       +F   L+NPP+
Sbjct: 227 ERNLLTSAIGRMNLFLHGIED-------FRIVRGDTLANPAFVEGDRLMQFDVVLANPPY 279

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K   D+DA          GR   G P        F  H+   ++      GR AI+  
Sbjct: 280 SIKQW-DRDA----WSADPWGRNIYGTPPQGRADYAFWQHIIKSMKAK---SGRCAILFP 331

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF       ES +R  L+ +D++E ++ L  +LF+ + +   + I    K +ERR K
Sbjct: 332 HGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKERRNK 387

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKV 480
           V  INA +  T  R +      + +D  ++I+  Y    +   F+R++       +   +
Sbjct: 388 VLFINALNEVTRERAQS----FLTNDHIQRIVSAYQDFCDEDGFARVVSNDEVREKASNL 443

Query: 481 LRPLRMS 487
             PL + 
Sbjct: 444 SIPLYVR 450


>gi|77543208|gb|ABA87020.1| methylation subunit [Vibrio cholerae]
 gi|259156470|gb|ACV96414.1| type I restriction-modification system, M subunit [Vibrio cholerae
           Mex1]
          Length = 524

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 126/536 (23%), Positives = 209/536 (38%), Gaps = 72/536 (13%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           MT+   SAA     L   IW  A D+ G     DF + +L     R +        +   
Sbjct: 1   MTQLQQSAAQQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGD 60

Query: 57  E--KYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--- 107
           E   Y A    + ++    E  +K  GY  Y  S+   +   + +   NL + +A+    
Sbjct: 61  ESVNYAAMSDDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANAHKNENLNTDLAAIFAA 119

Query: 108 ----------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIEL-HPDTVPDR 153
                       + K +F DFD +S         K   L  + K  +G+   + +     
Sbjct: 120 IENSANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLTAVLKGVAGLTFGNFEDNQID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP 
Sbjct: 180 LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L  A  H                 GQEL   T+ +    M +  +  D      
Sbjct: 232 AGSGSLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK----- 280

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NIQ G TL++  F   K F   +SNPP+  KW    D            RF P   L  
Sbjct: 281 FNIQLGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +
Sbjct: 336 KSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETV 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N      ++ +    
Sbjct: 389 ISLAPNLFFGTTIAVNILVLSKHKTDTT---TQFIDASGLFKKETN----NNVLTEQHIE 441

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
            I+ ++ S+EN   F++ +D          + V   +      +   +  L A++ 
Sbjct: 442 DIMKVFASKENVEHFAKCVDLDVIAGNSYNLSVSSYVEAKDNRELVDITELNAELK 497


>gi|160894140|ref|ZP_02074918.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50]
 gi|156864173|gb|EDO57604.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50]
          Length = 500

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 110/527 (20%), Positives = 195/527 (37%), Gaps = 61/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IW  A  L G+   +++  V+L    L+ +    +     + E+  
Sbjct: 1   MADKNTANIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDDKYQELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
              G   + +     +   F+  +    S + +      + + I    DNA    E  + 
Sbjct: 59  ---GDGFEEDIDEYTSEGIFFVPAGARWSEIAAKAHTPEIGTVI----DNAMRAIEKENK 111

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L  +   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 112 RLKDILPKNFARPELDKRRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   + +   H
Sbjct: 172 GGEFFTPSCVVRTLVEVLKPFKG-----------RVYDPCCGSGGMFVQSAKFIEN---H 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E D             T   D     R  
Sbjct: 218 SGNISNISIYGQDSNPTTWKMAQMNLAIRGIEPD------LGTYAADTFLDDRHPTLRAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF               K  E  R+  G+P   + +  +L H+   L       
Sbjct: 272 YIMANPPFNLSDWG-------LDKLKEDQRWKYGIPPAGNANFAWLQHMIYHLAPA---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L +     GE EIR+ ++  DL+E IVA+PT LF+ T I   LW ++ +
Sbjct: 321 GRIGMVLANGSLSSQS--GGEGEIRKNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQ 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K +   G+   I+A  +   +    +K R + DD  ++I D Y +  +G       +  +
Sbjct: 379 KKQP--GRTLFIDARKMGKMV---SRKLRELTDDDIKKISDTYEAFVDGTLENVKGYCAV 433

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            D      +   +L P R   I ++        +   R  S L + F
Sbjct: 434 TDTAEIEKQDY-ILTPGRYVGIEEQEADDEPFEEKMDRLTSELAEMF 479


>gi|154249204|ref|YP_001410029.1| type I restriction-modification system, M subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153140|gb|ABS60372.1| type I restriction-modification system, M subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 814

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 116/587 (19%), Positives = 227/587 (38%), Gaps = 58/587 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   L   ++K A+ L G    +++ + I     L+      E  R  ++ ++ 
Sbjct: 1   MTGEKITLRQLEAHLFKAADKLRGKMDASEYKEYIFGMLFLKYASDVFEEKRRELKNEFR 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
             G S   +   ++     G +F+         +        N  N   S +   +   +
Sbjct: 61  DMGYSEEQINELLEDPNSYGDTFFVPERARWENILKLKEDVGNQLNKALSALEEANTGLE 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            + +  DF++   +   K   L  +  +F+  +L P       ++   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNNYKLIPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +      L  +GQEL   T ++C   M++  +           I+    L+  +F   
Sbjct: 231 GQN---SANLALYGQELNGLTWSICKMNMILHGIND-------AQIENEDVLTNPMFLEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K+F   L+NPPF + + +         +  E  ++G          ++FL H+   L
Sbjct: 281 GYIKKFDRILANPPFSENYSR------ANMQFTERFKYGFTPENGKKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF       E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 K----DNGVMATVMPHGVLFRSGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFS 465
           + +++  K E  + K+  INA   +   RN    +  +  +   +I+ ++   +E  K+S
Sbjct: 388 IIVINKNKPENLKNKILFINADREYGEGRN----QNFLRPEDIEKIVTVFEEKKEIPKYS 443

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKL---SPLHQSFWLDIL 519
           +++D +        + + R +  S   +   + A L   IT +++       + F L+  
Sbjct: 444 KLVDIKEIEENDFNLNIRRYVDNSPDPEIEDVHAHLFGGITKQEVMLYENQLKKFSLNYD 503

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
             + ++   Y   +  V +  +  E      +               
Sbjct: 504 ILLTEKSENYLEFKKDVTDKNQIREVINNSTEVKGVIEKHKEKLLEW 550


>gi|295105616|emb|CBL03160.1| type I restriction system adenine methylase (hsdM)
           [Faecalibacterium prausnitzii SL3/3]
          Length = 520

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 123/533 (23%), Positives = 208/533 (39%), Gaps = 69/533 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------- 54
           T+       L   IW  A+DL G     DF   +L     R +   +    +        
Sbjct: 4   TKKEQEREELHRAIWAIADDLRGAVDGWDFKSYVLGTMFYRYISENIASYINQGEIDAGN 63

Query: 55  --VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSD 109
              R + ++   +    E  V+  G+    +  +      + N  N    LE+      +
Sbjct: 64  PDFRYEDMSDAEAEQAREGLVQEKGFFILPSELFCNVRAKAANDENLNETLETVFRHIEE 123

Query: 110 NAKAI---------FEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV---MS 156
           +AK           F+D+D +S       A    K+ K  +G+ +++   V +       
Sbjct: 124 SAKGSSSEGQFAGLFDDYDVNSNKLGATVAKRNEKLVKLLNGVADMNLGDVKEHDIDAFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP CG+
Sbjct: 184 DAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKEINK--------VYDPACGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A   +      +         GQE+   T+ +C   M +  +E D       +I
Sbjct: 236 GSLLLKAEKVLGRDAVRNG------FFGQEINITTYNLCRINMFLHDIEFDK-----FDI 284

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
               TL+       + F   +SNPP+  KW  D++ +          RF P   L   S 
Sbjct: 285 ACEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDENPLLIND-----PRFAPAGVLAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ L
Sbjct: 340 ADLAFIMHSLAWL----ASNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFIDCIIQL 392

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+IAT + +L   KT+    KV  I+A+     + N       +  +   +I+
Sbjct: 393 PSNLFFGTSIATCIMVLKKGKTD---NKVLFIDASSECVKVTN----NNKLTPENINKIV 445

Query: 454 DIYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           D +  R E   FS + +Y           V   +      +K  + +L A+I 
Sbjct: 446 DTFAQRTEEAHFSHLAEYSEVQENDYNLSVSTYVEAKDTREKIDIVKLNAEIA 498


>gi|260905939|ref|ZP_05914261.1| type I restriction-modification system, M subunit [Brevibacterium
           linens BL2]
          Length = 506

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 122/535 (22%), Positives = 212/535 (39%), Gaps = 63/535 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVRE--KYLAFG 63
           +   L + +W  A  L G     D+   + P    + +    +     AVR+    L   
Sbjct: 12  TQRELESTLWAAANALRGPVDAGDYKAYVFPVFFFKWISDTYDYWHTQAVRDWGDELTDE 71

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               D + F+   G  + +     ++   + NT       +   +     +F D ++++ 
Sbjct: 72  IEASDYQPFIVPTGCRWKDVHSTVVNVGVALNT---ALQKVEQTNPELVGVFGDINWANK 128

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL +  L   +   F  + L PD V   ++   YE+L+R F     + A +F TPR V
Sbjct: 129 -DRLPENALT-DLLDAFHSVRLDPDHVEGDMLGAAYEYLLREFAEASGKKAGEFFTPRHV 186

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           VHL   +L           P    ++ DP CG+ G L + +N V + G     P  L  H
Sbjct: 187 VHLLVKIL----------QPQSGDSIIDPACGSAGMLVETVNEVKNSGGD---PRTLSLH 233

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNP 299
           GQE+   T A+    + +  LE         +I++G T S+  F        F+  ++NP
Sbjct: 234 GQEVNLTTSAIAKMNLYLHGLED-------FSIKRGDTFSEPRFVTNGKLDAFNVVIANP 286

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  +             N    R   G+P   +G   ++ H+ + ++      GR  +V
Sbjct: 287 PFSLQNWGASS-----WSNDSYNRAFCGVPPAKNGDFAWIQHMISSMK---EDTGRVGVV 338

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF    G  E  IR+ LLE DL+EA+++LP +LF+ T+I   L I   +K+ ERR
Sbjct: 339 MPHGVLFR---GGKEGAIRQCLLEKDLLEAVISLPKNLFYSTSIPVCLLIFRAKKSAERR 395

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN---------------GKF 464
            +V  ++A+  +++  N    +  +++     I   Y   E+                + 
Sbjct: 396 SRVLFVDASSRFSAGTN----QNTMSESDIDTIFAAYTRGEDIDGEDEGLHLRLVELDEI 451

Query: 465 SRM-LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            +   D     Y   +V   + +   L     AR E  I  R+L     +   D 
Sbjct: 452 EKNGFDLNIGRYISTEVAAEIDVEAALAAYRDARGELRIAERRLDEKLAAAGFDA 506


>gi|253576200|ref|ZP_04853531.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251844327|gb|EES72344.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 507

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 111/528 (21%), Positives = 196/528 (37%), Gaps = 73/528 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A+ L G     ++  V L    L+ +  A E    A++ +  A      +  
Sbjct: 8   FEEKLWSMADKLRGSMDAAEYKHVALGLLFLKYVSDAFEEKYEALKNEPYADPEDRDEY- 66

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
               VA   F+   E   S +     +       +N    I   + + K +         
Sbjct: 67  ----VAENIFWVPKEARWSHIKDNAKKPEIGQIIDNAMIAIEKENPSLKGVLPKDYARPA 122

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +      L ++   FS      ++    V+  +YE+ + +F S   +   +F TP  V
Sbjct: 123 LDK----TRLGEVIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPNSV 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 +YDP CG+GG    +   V +   H      +  +
Sbjct: 179 VRLLVEMIQPFKG-----------RVYDPCCGSGGMFVQSEKFVEE---HQGRIGDIAVY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +C   + IR ++       +       T   DL    +  Y L+NPPF  
Sbjct: 225 GQESNPTTWKLCKMNLAIRGIDG------NLGEHHADTFHNDLHKNLKADYILANPPFNI 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                +   +         R+  G+P   + +  ++ H+ NKL       G A  VL++ 
Sbjct: 279 SDWGGERLTDD-------TRWTYGVPPAGNANYAWIQHIVNKL----APSGVAGFVLANG 327

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EERR 419
            +    + + E EIR  L+  DL++ IV LP  LF+ T I   LW ++  K      +RR
Sbjct: 328 SMST--STTAEFEIRSKLVNADLVDCIVTLPGQLFYSTQIPVCLWFIAKNKAPKGFRDRR 385

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENGKF---------SR 466
           G++  I+A  +   +    +  R ++ +  R+I D Y +     E G +         ++
Sbjct: 386 GEILFIDARKMGHMV---DRTHRELSTEDIRKIADTYHAWRGQAEVGAYEDVKGFCKAAK 442

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           + D +   Y    +L P R   I D    +    D   R    L + F
Sbjct: 443 LADVQEHEY----ILTPGRYVGIEDVEEDSEPFEDKMARLTEELAEQF 486


>gi|239906157|ref|YP_002952896.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1]
 gi|239796021|dbj|BAH75010.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1]
          Length = 531

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 102/469 (21%), Positives = 197/469 (42%), Gaps = 47/469 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +  TG+       ++K A+ L G+ + +D+  V L    L+ +  + E   +A+  +  +
Sbjct: 24  SNGTGANLGFEGELFKAADKLRGNMEPSDYKHVALGLIFLKHISDSFEAKHAALTAEDPS 83

Query: 62  FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                 +   E+   V   + ++  + +    G     ++    I + +++ K +     
Sbjct: 84  CAEDPDEYLAENIFWVPKEARWSHLQANAKQPGIGKIVDDALVAIEAKNESLKGVLPKDY 143

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               + ++    +L ++    SGI L  +      V+  +YE+ + +F     +   +F 
Sbjct: 144 ARPALNKV----MLGELIDLISGIGLGTEQGQSRDVLGRVYEYFLSQFAGSEGKRGGEFY 199

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR VV +   +L                 +YDP CG+GG    +   VA+ G       
Sbjct: 200 TPRSVVRVLVDMLEPFKG-----------RVYDPCCGSGGMFVQSNKFVAEHGGRLG--- 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE    T  +C   + +R ++SD R +         +  KD     R  + L+N
Sbjct: 246 DIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNSEG------SFHKDELKDLRADFILAN 299

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +       +  E  R+  G+P   + +  +L H+ + L       G A +
Sbjct: 300 PPFNISDWGGE-------RLREDVRWSFGIPPAGNANFAWLQHIFHHL----GPNGTAGV 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT--- 415
           VL++  + + +  SGE +IR+ +LE D+++ ++ALP  LF+ T I   LW L+  K    
Sbjct: 349 VLANGSMSSSQ--SGEGDIRKAMLEADVVDCMIALPGQLFYSTQIPACLWFLARDKANHG 406

Query: 416 -EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             +RRG+V  I+A  L   +    + RR  + +   +I   Y +    K
Sbjct: 407 FRDRRGEVLFIDARKLGHLV---DRTRREFSAEDIAKIAGTYHAWRGEK 452


>gi|114330559|ref|YP_746781.1| N-6 DNA methylase [Nitrosomonas eutropha C91]
 gi|114307573|gb|ABI58816.1| N-6 DNA methylase [Nitrosomonas eutropha C91]
          Length = 542

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 106/485 (21%), Positives = 196/485 (40%), Gaps = 67/485 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T         ++K A+ L G+ + +D+  V L    L+ +  A E   + +  +  A 
Sbjct: 7   NKTTDHLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAELAAESAAA 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
                +      +A   F+   E   S L +   R       ++    I   +++ K + 
Sbjct: 67  AEDKDEY-----LADNIFWVPKEGRWSHLKANAKRPEIGTLIDDAMRAIEKDNESLKGVL 121

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   + ++    +L ++    SGI ++        V+  +YE+ + +F     +  
Sbjct: 122 PKDYARPALNKV----MLGELIDLISGIAMNEGGDKSKDVLGRVYEYFLSQFAGAEGKRG 177

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV +   +L           P     +YDP CG+GG    +   V + G   
Sbjct: 178 GEFYTPRSVVQVLVQML----------EPYAG-RVYDPCCGSGGMFVQSEKFVLEHGGRI 226

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T  +    + +R ++SD R +         +  KD     RF +
Sbjct: 227 G---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIRWNNEG------SFHKDELRDLRFDH 277

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF               +  E  R+  G+P + + +  +L H+   L       G
Sbjct: 278 ILANPPFNISDWGG-------DRLREDPRWQFGVPPVGNANYAWLQHIHWHLAPF----G 326

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A +VL++  + + +  SGE EIR+ ++E D ++ +V LP  LF+ T I   LW L+  K
Sbjct: 327 TAGVVLANGSMSSNQ--SGEGEIRKAMVEADAVDCMVTLPGQLFYSTQIPACLWFLARDK 384

Query: 415 T--------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +               +RRG+V  I+A ++ T +    + RR + D+  ++I D Y +  
Sbjct: 385 SNGKRGSLSKGGETLRDRRGEVLFIDARNMGTLV---DRTRRELTDEDIQKIADTYHAWR 441

Query: 461 NGKFS 465
             K +
Sbjct: 442 GEKVA 446


>gi|251772354|gb|EES52922.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 522

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 111/535 (20%), Positives = 196/535 (36%), Gaps = 79/535 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +W+ A+ L  +    ++  V+L    L+ +  + E   + +  +           E
Sbjct: 17  LEAKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTNEVSQGANPEDPDE 76

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK- 129
                A   F+   E   S L +   R  +   I    D+A    E  D  S    L K 
Sbjct: 77  ---YRADNVFWVPKEARWSVLQANAKRPEIGKVI----DDAMVAIER-DNKSLKGVLPKD 128

Query: 130 -------AGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                     L ++      I L         ++  +YE+ + +F S   +    F TPR
Sbjct: 129 YARPGLDKQRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSQFASAEGKRGGQFYTPR 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV +   +L                 +YDP CG+GG    +   +   G        + 
Sbjct: 189 SVVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEVHGGRIG---DIS 234

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE    T  +    + IR + +      +   +   +  KDL    +  Y L+NPPF
Sbjct: 235 IYGQESNHTTWKLAAMNLAIRGIAA------NLGQENADSFHKDLHPDLKADYILANPPF 288

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                          +  E  R+  G+P + + +  ++ H  + L       G A  VL+
Sbjct: 289 NSSDWGG-------DRLREDRRWVYGVPPVGNANFAWVQHFISHL----APNGVAGFVLA 337

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------ 415
           +  L + +  SGE EIR+ ++E D+++ IVALP  LF+ T I   LW +S  K       
Sbjct: 338 NGSLSSNQ--SGEGEIRKNMVEADVVDCIVALPGQLFYSTQIPVSLWFVSRNKKNGKGLE 395

Query: 416 ----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--------- 462
                +R G++  I+A  L        +  R ++D+   +I   Y +             
Sbjct: 396 GKPLRDRSGEILFIDARKLGFMA---DRTHRDLSDEDIAKIAGTYHNWRGDGDGTYEDVA 452

Query: 463 ---KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
              K +++ + +T G+    VL P R     +         +   R  + L++ F
Sbjct: 453 GFCKSAKLEEVQTHGH----VLTPGRYVGAEEAEDDGEPFEEKMKRLTAQLNEQF 503


>gi|306815513|ref|ZP_07449662.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Escherichia coli NC101]
 gi|305851175|gb|EFM51630.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Escherichia coli NC101]
          Length = 518

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 124/530 (23%), Positives = 208/530 (39%), Gaps = 66/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L  G    D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAALDDGIITDDIKDDAIRTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            S+E+      S   +       ++ V   +      +   +A L A++ 
Sbjct: 442 ASKEDVAHLAKSVAFETVVANDYKLSVSSYVEAKDNREIIDIAELNAELK 491


>gi|324115001|gb|EGC08966.1| type I restriction-modification system [Escherichia fergusonii
           B253]
          Length = 518

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 124/542 (22%), Positives = 209/542 (38%), Gaps = 68/542 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW  A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEAGDESIH 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAALDDSIITDDIKDDAIRTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G+ L + +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKGVEGLNLGNFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +             +GQE+   T  +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKHFDNHIIEEG------FYGQEINHTTFNLARMNMFLHNINYDK-----FDIRLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+     VQ I+A+ L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---SVQFIDASGLFKKETN----NNILTDGHIEQIMQVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+ +    ++ +   T         V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKTDVDHLAKTVPQETVAANNYNLSVSSYVEAKDNREIINIAELNAELKTTVSKIDQLR 501

Query: 512 QS 513
           + 
Sbjct: 502 KD 503


>gi|323971897|gb|EGB67121.1| type I restriction-modification system [Escherichia coli TA007]
          Length = 518

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 214/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L  G    D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAALDDGIITDDIKDDAIRTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEKIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 442 SSKEDVAHLAKSVAFETVVANDYNLSVSSYVEAKDNREIINIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|328951821|ref|YP_004369155.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452145|gb|AEB07974.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/492 (24%), Positives = 195/492 (39%), Gaps = 55/492 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +++W  A  L G     D+ + I P    +RL    +       E  +A   S 
Sbjct: 5   TQQQLESYLWGAATLLRGTIDAGDYKQFIFPLLFYKRLCDVFDE------ETQVALTESG 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F    E     +            N L S   +  D    IF D  +
Sbjct: 59  GDTEFAAYPENHRFQIPPEAHWQEMRQVAKDVGRTLHNALRSIETANPDKLYGIFGDAQW 118

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL  A L   + ++F+ + L    +P+  +   YE+LI++F  +    A +F T 
Sbjct: 119 TNK-DRLPDAMLR-DLIEHFATLNLSLANLPEDELGQGYEYLIKKFADDSGHTAAEFYTN 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R +VHL T +L          +P    ++YDPTCG+GG L   + H+   G   +    +
Sbjct: 177 RTLVHLMTEML----------APQPGESVYDPTCGSGGMLLSCIAHLRRQGQEWRN---V 223

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE    T A+      +  +E         +I +G TL+   F      +RF   L
Sbjct: 224 RLYGQERNLMTSAIARMNCFLHGVED-------FHIVRGDTLAHPRFVEGDRLQRFDVVL 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K         K       GR   G P        F  H+   L       GR 
Sbjct: 277 ANPPYSIKQWN-----RKAFAADPWGRNLFGTPPQGRADYAFWQHILCSL---SPQTGRC 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E+E+RR ++E DLIE ++ L  +LF+ + +   + +    K  
Sbjct: 329 AILFPHGVLFRQE----EAEMRRKIIEADLIECVLGLGPNLFYNSPMEACVVVCRMAKPR 384

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTFGY 475
           ERRGK+ LINA +  T  R +      + D   + IL  Y + ++   F+ +        
Sbjct: 385 ERRGKILLINAVNEVTRERAQS----FLTDTHIQHILHAYQTFQDEPGFTGVASLEEIRA 440

Query: 476 RRIKVLRPLRMS 487
           R   +   L +S
Sbjct: 441 RDGNLSILLYVS 452


>gi|297568980|ref|YP_003690324.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924895|gb|ADH85705.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 538

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 61/470 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            S    +W+ A+ L G  + +++  V+L    L+ +    E  +  +  +     G  +D
Sbjct: 26  KSFEQTLWETADRLRGTVESSEYKHVVLSLIFLKFVSDKFEQRKRELIAEG---QGDYVD 82

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKAIFEDFDFS 121
           +  F       FY   E   ST+     ++++   I          +   +    D  FS
Sbjct: 83  MVEFY-TMKNVFYLPEEARWSTIRKAAKQDDIAVRIDTALHTVEKNNPALRGALPDNYFS 141

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                + K   L     N   +  H       V+  +YE+ + +F +   +G  +F TP+
Sbjct: 142 RLGLDVSKLAALIDSINNIDTVADHEQ----DVVGRVYEYFLGKFAATEGKGGGEFYTPK 197

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L   ++                 +YDP CG+GG    ++  V    SH      + 
Sbjct: 198 CVVKLIAEMIEPFRG-----------KIYDPCCGSGGMFVQSVKFVE---SHRGSKKDIS 243

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE    T+ +    + IR + +      +       T  KD     +  + ++NPPF
Sbjct: 244 IYGQEYTSTTYKLSKMNLAIRGIAA------NLGEAPADTFFKDQHPDLKADFIMANPPF 297

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K  +  + +  + +       G  +P   + +  +++H+ +KL    +  G A  VL+
Sbjct: 298 NLKEWRAANELTDDPRWA-----GYEVPPTGNANYAWILHMVSKL----SENGVAGFVLA 348

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------ 415
           +  +      SGE  IRR L+ENDLI+ ++A+P  LF+ T I   LW ++  K       
Sbjct: 349 NGSMST--NTSGEGLIRRKLIENDLIDCMIAMPGQLFYTTQIPVCLWFITRNKKAQRIEG 406

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                  +RRG+   I+A ++ T I    +  + +  D   +I   Y + 
Sbjct: 407 HSDSSHRDRRGETLFIDARNMGTMI---DRTHKELTCDDIAEIARTYHAW 453


>gi|167904493|ref|ZP_02491698.1| Type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei NCTC 13177]
          Length = 832

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/575 (20%), Positives = 211/575 (36%), Gaps = 66/575 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++K A+ L G    ++F + I     L+R     +  R  V    +  G S 
Sbjct: 4   TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVVGLEMQAGKSE 63

Query: 67  IDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIF 115
            +     + + +     SF+  S+     L +   +      N   + I + + +   + 
Sbjct: 64  AEARQSAENSRWYKKEGSFWVPSQSRYEFLINDAHQNVGDYLNKALTGIETANTSLYDVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173
           E  DF+  + + +   +  +    +F+   L  +      ++   YE+LI  F     + 
Sbjct: 124 EHIDFTRKVGQSKIPDIKLRQLITHFAKHRLRNEDFEFPDLLGAAYEYLIGEFADSAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   L+           P +   +YDP CG+GG L  A  ++ + G  
Sbjct: 184 GGEFYTPRSVVRMMVRLV----------KPELKHDVYDPCCGSGGMLIAAKEYIDEHGED 233

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
            +        GQE      ++    ML+  +        + N+Q   TL+          
Sbjct: 234 GRKAN---LFGQEFNGTVWSIAKMNMLLHGIS-------TTNLQNDDTLADPQHVEGGEL 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVE----KEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             F   ++NPPF   W   +   +       K  E  ++G          ++FL H+   
Sbjct: 284 MHFDRVITNPPFSLPWGNTERNTDGTPAWAPKFPERFKYGQVPLGAKKADLMFLQHMLA- 342

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                  GG  A V+    LF    G  E  IR  ++++DL+EA++ +  +LF+ T I  
Sbjct: 343 ---VTRDGGMVATVMPHGVLFR---GGEERAIRAGIIDDDLLEAVIGVAPNLFYGTGIPA 396

Query: 406 YLWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            + +L  R          K  +R+GKV  INA   +     EG+ +  +  +   +I   
Sbjct: 397 CILVLRQRVQNGANRVSGKPVKRQGKVLFINADREY----FEGRAQNHLLPEHIEKIATT 452

Query: 456 YVS-RENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
           +   R    FS ++D  T       + + R    +   +   + A L   +   ++    
Sbjct: 453 FDEFRAVPGFSAIVDIATLKANDYNLNIRRYADNAPSPEPHDVRAHLVGGVPKAEVQAKA 512

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
             F    L PM   +        F  E  K  + K
Sbjct: 513 ALFAAHGLDPMDLFVERDAKYVDFNPELAKRQDLK 547


>gi|126726005|ref|ZP_01741847.1| type I restriction-modification system, M subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126705209|gb|EBA04300.1| type I restriction-modification system, M subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 502

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/536 (20%), Positives = 206/536 (38%), Gaps = 45/536 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T S   +    W   +   G    +++   +L    ++ L    +  R+    ++ 
Sbjct: 1   MTPITQS--EINKAAWAACDTFRGLIDASEYKDYVLTMLFMKYLSDVWQDHRTGYEAEHP 58

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  +L   E+F    G+SFY+  +               ++   +     + +F D
Sbjct: 59  DSPELVEELMRTEAFALPKGHSFYDLYDRRHEAGNGQRIDEATQAIEQANLSKLENVFRD 118

Query: 118 FDFSSTIARLE--KAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F++     E  K  LL  + ++F+   ++L P  V    ++   YE+LI RF S   +
Sbjct: 119 ISFNANKLGEEDQKNDLLKSLLEDFNTPALDLRPSRVGQLDIIGGAYEYLISRFASSAGK 178

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  L   L+           P     + DPTCG+   L      + D   
Sbjct: 179 KAGEFYTPAQVSMLMARLM----------DPQQNDEICDPTCGSASLLMKCGKLIRDSSG 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K       +GQE    T A+    + +   E+   +          T   D  T + F
Sbjct: 229 TRKY----ALYGQEAIGSTWALAKMNLFLHGEENHDIQWGDTIRSPKLTTGDD--TLRHF 282

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF         A     +  + GRF  G+P  + G   F++H+   ++     
Sbjct: 283 DVVVANPPFSLDKWGVAAA-----EADKFGRFTRGIPPKTKGDYAFILHMIETMKPRT-- 335

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+V+    LF G +   E +IR+ L+E +L++A++ LP  LFF T I   + +   
Sbjct: 336 -GRMAVVVPHGVLFRGSS---EGKIRKQLIEQNLLDAVIGLPEKLFFGTGIPAAILVFRK 391

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           RK ++    V  I+A+  + S  N    +  + D    +I++ Y +R +  K++ +    
Sbjct: 392 RKADDT---VLFIDASREFDSGTN----QNTLTDSHLDKIVETYAARADMDKYAHVASAA 444

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                   +  P  +    ++  +  +       KL+   +     +   + +  Y
Sbjct: 445 EIAENDYNLNIPRYVDTFEEEEEIDLMAVRSERLKLNTEMEELEAKMAGYLAELGY 500


>gi|116754513|ref|YP_843631.1| N-6 DNA methylase [Methanosaeta thermophila PT]
 gi|116665964|gb|ABK14991.1| N-6 DNA methylase [Methanosaeta thermophila PT]
          Length = 522

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 213/550 (38%), Gaps = 66/550 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L  ++W  A  + G      F   ILP   L+RL    E     + E++ +   +   
Sbjct: 6   STLETWLWDAACAIRGPLDAPKFKDYILPLVFLKRLSDVFEDELDRLAEEFGSRDVATRI 65

Query: 69  LESFVK-------VAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFE 116
           +E   +            FY       S +    T       +    +A  +   + + +
Sbjct: 66  VEDERERGTIANSRGSVRFYIPERARWSNIRKQTTGLGQYLTDAVRAVARENPRLRGVID 125

Query: 117 DFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             DF++T     +     L K+    S   L    V   ++   YE+L+R+F     + A
Sbjct: 126 LVDFNATAAGQHIVPDEYLAKLVNVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQGQSA 185

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----AD 229
            +F TPR+V  L   +L           P    T+YDP CG+GG L      +       
Sbjct: 186 GEFYTPREVAVLMARIL----------EPEPGMTVYDPACGSGGLLIKCHLRLLETRGEQ 235

Query: 230 CGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              H ++PP    L   GQE+ P T A+     +I  +E+D         + G T+    
Sbjct: 236 QNGHRRLPPEHAPLRLFGQEINPTTFAMARMNAVIHDMEADI--------RLGDTMRNPA 287

Query: 287 FTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           F         F    +NP + + +  +       ++N    RF  G+P  S     +L H
Sbjct: 288 FRDATGRLMTFDLVTANPMWNQDFPTEV------YENDPYERFRFGVPPSSSADWGWLQH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L    N  GR A+VL +  +  G    G   E +IRR  +ENDLIEA + LP ++F
Sbjct: 342 MLASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRRAFVENDLIEAAILLPENMF 397

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T    ++ +++ RK   R G++ LINA+ L+   R +      + D+    I  +Y  
Sbjct: 398 YNTTAPGFIIVVNRRK--RRPGEILLINASKLFAKGRPK----NYLADEHIETIARLYHD 451

Query: 459 -RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            R     + ++           +  P R     DK  +  LE  +   + +   ++    
Sbjct: 452 WRAEEGLAAVITNEEAARNDYNLS-PSRYVASNDKEEVLALEDAVVLLREAEEERAQADR 510

Query: 518 ILKPMMQQIY 527
            L  +++ + 
Sbjct: 511 KLNEVLKALG 520


>gi|189467605|ref|ZP_03016390.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM
           17393]
 gi|189435869|gb|EDV04854.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 111/517 (21%), Positives = 198/517 (38%), Gaps = 67/517 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IWK A+ L G+   +++  V+L    L+ +    E    A+ ++  
Sbjct: 1   MAKTNTAEIGFEKDIWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFEAKYQALIDE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
              G   + +     +   F+   E   S +        + + I    DNA  + E  + 
Sbjct: 59  ---GDGFEEDKDEYTSENIFFVPQEARWSMIAKAAHAPEIGTVI----DNAMRLIEKENT 111

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L  +   F+ I++        ++   YE+ + +F     + 
Sbjct: 112 RLKGILPKNFARPELDKRRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L           P     +YDP CG+GG    +   +     H
Sbjct: 172 AGEFYTPACIVRTLVEVL----------QPYSG-RVYDPACGSGGMFVQSAKFIER---H 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D             T   D     +  
Sbjct: 218 QGNINNISVFGQDSNPTTWKMAQMNLAIRGIEAD------LGKFNADTFFDDQHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF           +         R+  G+P   + +  +L H+ + L    +  
Sbjct: 272 YILANPPFNLSDWGVDKLQDDV-------RWKFGIPPAGNANFAWLQHMIHHL----SPK 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L +     GE +IR  +++ DLIE IVALP+ LF+ T I   LW L+  
Sbjct: 321 GRIGMVLANGSLSSQS--GGEGKIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRA 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDD------QRRQILDIYVSRENGKFSRM 467
           K  ++ GK+  ++A ++ T +    +K R ++D         ++I D + +   G     
Sbjct: 379 K--KQTGKILFVDARNMGTMV---TRKLRELSDSEEGEKGDIQKIADTFHAFNEGT---- 429

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDK---TGLARLEAD 501
           LD          +    +  +IL      G+A +E D
Sbjct: 430 LDNEKGFCAIATLEDVAKQDYILTPGRYVGIAEVEDD 466


>gi|313672539|ref|YP_004050650.1| site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939295|gb|ADR18487.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 509

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 203/533 (38%), Gaps = 51/533 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +  S    +WK A+ L  +    ++  V+L    LR +  A E     +++   
Sbjct: 1   MAEQKQNIESFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISDAFEDLYEKLKKGEG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
            + G++ +     K A   F+   E   S L +           +     I   + + K 
Sbjct: 61  EYSGADPEDVDEYK-AENVFFIPPEARWSYLKAHAKSPEIGKIIDRAMDLIEKENPSLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172
           +         I  +   GL       F+ + ++        ++ +++E+ + +F     +
Sbjct: 120 VLPKVYARGNIDPISIGGL----IDLFNNMAINEAKEKTSDILGHVFEYFLGQFALAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR VV L   +L                 ++DP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPRSVVELLVEMLEPYKG-----------RVFDPCCGSGGMFVQSEKSVQE--- 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE    T  +C   + IR ++S   +   +      +   D     + 
Sbjct: 222 HQGKINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNPEG-----SFLNDAHKDLKA 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +   +         R+  G+P   + +  ++ H    L    + 
Sbjct: 277 DFVIANPPFNDSDWSGELLRKDV-------RWKYGVPPEGNANYAWIQHFIFHL----SP 325

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL+   L   +  + E EIR+ ++++D+I+ IV LP  LF  T I   LW +  
Sbjct: 326 SGKAGFVLAKGSLTTKQ--NAEYEIRKNMIQDDIIDCIVNLPPKLFLNTQIPACLWFIRK 383

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            KT  ++G++  I+A D+   I    +++R++ +D  R+I D Y   +    S   D + 
Sbjct: 384 NKTT-KKGQILFIDARDMGQLI---NRRQRVLTEDDIRKIADTYHKWQKEDGS-YEDIKG 438

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           F  +   +     + ++L       L  +               + L+ + ++
Sbjct: 439 F-CKSATIEEVANLDYVLTPGRYVGLPDEEEDFDFEERFNKLKAEFLQQLKEE 490


>gi|295101615|emb|CBK99160.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 514

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 194/537 (36%), Gaps = 67/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   + +     
Sbjct: 1   MAEKNTADIGFEKQIWDAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVADGD 60

Query: 61  AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            F     +  S   F   AG  + + S  +          + + +          A  +D
Sbjct: 61  GFEEDRDEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKEN-----ARLKD 115

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +          L ++   F+ I++        ++   YE+ +  F  +  +   +F
Sbjct: 116 ILPKNFARPELDKRRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEF 175

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L                 +YDP CG+GG    +   V +   H    
Sbjct: 176 FTPSCVVRTLVEVLQPFKG-----------RVYDPCCGSGGMFVQSAKFVEN---HSGNI 221

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQ+  P T  +    + IR +E D             T   D     R  Y ++
Sbjct: 222 NDISIYGQDSNPTTWKLAQMNLAIRGIEPD------LGKYAADTFLDDQHPTMRADYIMA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +   +         R+  G+P  S+ +  +L H+   L      GGR  
Sbjct: 276 NPPFNLSNWGAEQLKDDV-------RWQYGMPPASNANFAWLQHMIYHL----APGGRMG 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L +     GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S RK  +
Sbjct: 325 MVLANGSLSSQS--GGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKRK--K 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIIND--------------DQRRQILDIYVSRENG- 462
           R GK   I+A  +   +    +K R + D              +  ++I D Y +  NG 
Sbjct: 381 RAGKTLFIDARKMGVMV---SRKLRELTDGTKEEYKNEDGTSKNDIKKIADTYNAYVNGT 437

Query: 463 -----KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                 F  ++D      +   +L P R   + ++        +   R  S L   F
Sbjct: 438 LEDVKGFCAVVDTEKIAEQDY-ILTPGRYVGVEEQEDDGEPFEEKMARLTSELSDLF 493


>gi|168464569|ref|ZP_02698472.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632696|gb|EDX51150.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 539

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/559 (21%), Positives = 219/559 (39%), Gaps = 72/559 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E
Sbjct: 15  FEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  ++   + K+ +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNDAELTKDLRFA-----GYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG----------K 463
               R+G+   I+A +L T +    +  + +  D    I D Y +  +            
Sbjct: 400 GYRNRQGETLFIDARNLGTMM---NRTTKELTADDIATIADTYHAWRSTPEELAARVKRG 456

Query: 464 FSRMLDYR-TFGYRRIKVLRPLRMSFIL----DKTGLARLEADIT--WRKLSPLHQSFWL 516
            S++  Y    G+ ++  +  ++ +  +       G A  E D      K+  L Q+ + 
Sbjct: 457 DSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAEQEDDGVAFETKMRELSQTLFA 516

Query: 517 DILKPMMQQIYPYGWAESF 535
            + +            E+F
Sbjct: 517 QMKQAEELNKAIRQNLEAF 535


>gi|238787647|ref|ZP_04631445.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii
           ATCC 33641]
 gi|238724434|gb|EEQ16076.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii
           ATCC 33641]
          Length = 526

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/538 (22%), Positives = 213/538 (39%), Gaps = 74/538 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW  A ++ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAALQRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSIN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+  ++   + ++  +L + +A           
Sbjct: 60  YAELPDSVITQEIKEDAIKTKGYFIRPSDLFVNVAKNAHSNESLNTDLAHIFADIEASAS 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIY 159
                 + K +F DFD +S        +K   L  + K  +G++    T     +  + Y
Sbjct: 120 GYPSERDIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLDFGDFTASHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H                 GQE+   T+ +    M +  +  D       NIQ G
Sbjct: 232 LLQAKKHFDAHVIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIQLG 280

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-------QR 449
           LF+ T IA  + +L+  KTE      Q I+A+ L+    N      ++ D+         
Sbjct: 389 LFYGTTIAVNILVLAKNKTETT---TQFIDASGLFKKETN----NNVLTDNDDEKNLGHI 441

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGY---RRIKVLRPLRMSFILDKTGLARLEADIT 503
           +QI+ ++ S+EN   F+R + Y          + V   +      ++  +A+L A++ 
Sbjct: 442 QQIMRVFASKENVDHFARSVPYEEIANEKDYNLSVSSYIEAKDTREEVDIAQLNAELI 499


>gi|317501108|ref|ZP_07959314.1| type I restriction-modification system [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897495|gb|EFV19560.1| type I restriction-modification system [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 501

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 102/527 (19%), Positives = 205/527 (38%), Gaps = 60/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  LWG    +++  VI+    L+ +  A +     +  +  
Sbjct: 1   MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    +    F+   +     + +   +       ++    I + +   K 
Sbjct: 59  ---GDGFEDDPDAYLEDNVFFVPEDARWDKIAAAAHKPEIGTVIDDAMRAIEADNKKLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L  +   F+ +++        V+   YE+ I +F  +  +G
Sbjct: 116 VLPKNYASPDLDK----RVLGDVVDLFTNMDMGETEGNRDVLGRTYEYCIAQFAEKEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V+   ++L           P     +YD  CG+GG    +   +     +
Sbjct: 172 GGEFYTPSSIVNTLVSIL----------KPYSNCRVYDCCCGSGGMFVQSAKFIQAHSGN 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P+T  + +  + IR L++D             T + DL    +  
Sbjct: 222 RG---SISIYGQEANPDTWKMAIMNLTIRGLDAD------LGAYHADTFTNDLHPTLKAD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF          ++         R+  G+P  S+ +  ++ H+ + L       
Sbjct: 273 FILANPPFNYNPWGQDKLMDDV-------RWKYGIPPASNANFAWIQHMIHHL----APN 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L +     GE EIR+ ++E+DLIE I+A+P  LF+   I   LW +S  
Sbjct: 322 GKIGLVLANGALSSQS--GGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFISKG 379

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K  +++GK   I+A  +   +    +K R   ++  +++ + + + +NG       F  +
Sbjct: 380 K--KQKGKTVFIDARKMGHMV---DRKHRDFTEEDIQKLANTFEAFQNGTLEDEKGFCSV 434

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
              +    +   VL P R   I ++        +   R  S L   F
Sbjct: 435 ATIQDIAKQDY-VLTPGRYVGIEEQVDDGEPFEEKMTRLTSELSDMF 480


>gi|222152467|ref|YP_002561642.1| type I restriction-modification system M protein [Streptococcus
           uberis 0140J]
 gi|222113278|emb|CAR40812.1| type I restriction-modification system M protein [Streptococcus
           uberis 0140J]
          Length = 516

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 126/530 (23%), Positives = 213/530 (40%), Gaps = 63/530 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M+E       L + IWK A+D+ G     DF + IL     R +        E     + 
Sbjct: 1   MSEQ-AQRQELHSKIWKIADDVRGAVDGWDFKQYILGILFYRFISENFKNYMEAGDPNIN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------- 109
            + +       D++         F   ++   + + S  T +NL + + +  D       
Sbjct: 60  YENVPESLITDDIKDDAVKTKGYFIMPNQLFSNIVKSARTNDNLNTDLKAIFDAIQASAI 119

Query: 110 ------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F+D D +S        EK   L  I +  + +   H +     +  + Y
Sbjct: 120 GYESENDIKGLFDDVDTTSNRLGNTVPEKNKRLADILEGIASLNFGHFEDNKIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + S   +   +F TP++V  L   +++       K     I  +YDP CG+G  
Sbjct: 180 EYLISNYASNAGKSGGEFFTPQNVSKLLAKIVMLGRSESNK-----INKIYDPACGSGSL 234

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +             +GQE+   T+ +    M +  +  D       NIQ+G
Sbjct: 235 LLQAQKQFTEHVIEDG------FYGQEINLTTYNLARMNMFLHNINYDK-----FNIQRG 283

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       K F   +SNPP+   W    D            RF P   L   S    
Sbjct: 284 DTLTDPKHGNDKPFDAIVSNPPYSINWIGKDDPTLINDD-----RFAPAGVLAPKSKADF 338

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+MH  + L       GRAAIV+    L+ G A   E +IR++L++N+ +EAI+ LP +
Sbjct: 339 AFIMHSLSYLSAQ----GRAAIVVFPGILYRGGA---EQKIRKYLVDNNFVEAIIQLPNN 391

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + +L+  KT         I+A+  +    N      ++ ++   +IL+  
Sbjct: 392 LFFGTSIATCILVLAKNKTNT---DTLFIDASAEFKKATN----NNVLTEENIDKILESI 444

Query: 457 VSRENGK-FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            ++EN   F++++ Y T   G   + V   L      +K  +  L  +I 
Sbjct: 445 ENKENKDYFAQVVPYETIVEGDYNLSVSTYLEKEDTREKIDIDVLNNEIK 494


>gi|260903741|ref|ZP_05912063.1| type I restriction-modification system, M subunit [Brevibacterium
           linens BL2]
          Length = 523

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 204/533 (38%), Gaps = 69/533 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSA 54
           T      A L   IW+ A DL G     DF   +L     R +   L       E     
Sbjct: 4   TTKEAQRAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNKNEHDAGE 63

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF------ 107
           V   Y     S+ +      VA   FY   S+   +         NL   +         
Sbjct: 64  VSFDYRLAADSDAEFARDEVVAEKGFYILPSDLFANVRDRAAGDENLNETLERVFNNIEA 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP----DTVPDRVMS 156
                   D+ K +F+D D +S       A    K+ K    I   P    +     +  
Sbjct: 124 SAMGTDSEDDIKGLFDDLDVNSNKLGSTVAKRNQKLVKLLDAIGDLPLGRWEDNSIDLFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L++ + +   +   ++ TP++V  L   + +     + K        +YDP  G+
Sbjct: 184 DAYEYLMQMYAANAGKSGGEYYTPQEVSELLARITVAGKKQVNK--------VYDPAVGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +               +GQE+   T+ +    M +  +          N+
Sbjct: 236 GSLLLKFDKVLGKNNVRQG------FYGQEINLTTYNLARINMFLHDVNY-----ADFNL 284

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+       + F   +SNPP+  KW+ D + +    +     RF P   L   S 
Sbjct: 285 AHGDTLTDPQHWDDEPFEAIVSNPPYSIKWDGDANPLLINDE-----RFAPAGVLAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ I+ ++ L
Sbjct: 340 ADLAFTMHMLSWLAV----NGTAAIVEFPGVLYRGGA---ERKIRQYLVDNNYIDTVIQL 392

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF T IAT + +L   K   + G V  I+A+  +  + N+ K    + ++ + +IL
Sbjct: 393 PPDLFFGTTIATCILVLKKSK---KTGDVLFIDASAEFKRVGNKNK----LLEEHQARIL 445

Query: 454 DIYVSRE-NGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           + + +RE    F+ ++           I V   +      ++  +A L A+I 
Sbjct: 446 EAFTTREPEDYFTTVVSNEDIAANDYNIAVSSYVEAEDTREEVDIAELNAEIA 498


>gi|77920515|ref|YP_358330.1| type I restriction-modification system methyltransferase subunit
           [Pelobacter carbinolicus DSM 2380]
 gi|77546598|gb|ABA90160.1| type I restriction-modification system methyltransferase subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 708

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 137/685 (20%), Positives = 257/685 (37%), Gaps = 77/685 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +          L   G +
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDEE----LADALEESGGD 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSS 122
            +  +  +   +     + +  +     N     ++ L +   +  D    +F D  +++
Sbjct: 59  QEYAALPEQHRFQIPEDAHWKATRTKVKNVGKVIQDALRAIETANPDTLYGVFGDAQWTN 118

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    L  ++ ++FS   L     P+  +   YE LI++F  +    A +F T R 
Sbjct: 119 K-DRLPDRMLR-ELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRT 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L  
Sbjct: 177 VVHLMTEML----------EPRPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRN---LRL 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
            GQE    T A+    + +  +E          I +G TL+   F      K+F   L+N
Sbjct: 224 FGQERNLLTSAIGRMNLFLHGIED-------FRIVRGDTLANPAFVEGDRLKQFDVVLAN 276

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PP+  K W++D  + +        GR   G P        F  H+   ++      GR A
Sbjct: 277 PPYSIKQWDRDAWSADSW------GRNLYGTPPQGRADYAFWQHIIKSMKAK---SGRCA 327

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+     LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +E
Sbjct: 328 ILFPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKE 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
           RR KV  INA +  T  R +      + DD  + I+  Y +  +   F+R++       +
Sbjct: 384 RRNKVLFINAVNEVTRERAQS----FLTDDHIQHIVAAYQTFGDEDGFARVVGDDEIREK 439

Query: 477 RIKVLRPLRM-----SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              +  PL +     +           +A   W+K S   +     +   +++ +     
Sbjct: 440 GSNLSIPLYVRADNSNAQERSETFGLQQAIADWQKSSKALRKSMDYLF-GILEGVSSKTD 498

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYE 591
           A          ++ + ++    ++ + A + +    +P    V      ++ +  L   E
Sbjct: 499 APIRTITKKTIHKERVVQPAFKRAVLAAEVTSKLHMEPTFGSVKHEKIVFLCEKMLGLSE 558

Query: 592 NVPYLESIQDYFVREVSPHVPDA--YIDKIFIDEKDKEIGRVGYEINFNR---------F 640
            +        +  +   P+ P A    D+ F   K   I + G  I + +         +
Sbjct: 559 ALE-----HHHLRQAAGPYDPKARRSTDRTFTKNKWFIIKKNGKRIEYLKGEKFGSHEGY 613

Query: 641 FYQYQPSRK--LQDIDAELKGVEAQ 663
           F +Y P     + DI   L+    +
Sbjct: 614 FERYFPRESKYIHDIVELLRAATTE 638


>gi|312879436|ref|ZP_07739236.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas
           paucivorans DSM 12260]
 gi|310782727|gb|EFQ23125.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas
           paucivorans DSM 12260]
          Length = 507

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 113/527 (21%), Positives = 203/527 (38%), Gaps = 51/527 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L  ++W  A  L G     D+ + I P    +RL    +          L   G +
Sbjct: 3   SQSQLEAYLWGAATLLRGTIDAGDYKQFIFPLLFYKRLCDVYDEE----LADALEESGGD 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSS 122
            +  +  +   +     + +  +     N     ++ L +   +  D    +F D  +++
Sbjct: 59  REYAALPEQHRFQIPEDAHWKATRTQVKNVGKAIQDALRAIETANPDTLYGVFGDAQWTN 118

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    L  ++ ++FS   L     P+  +   YE LI++F  +    A +F T R 
Sbjct: 119 K-DRLPDRMLR-ELIEHFSSQTLSLAHCPEDELGVGYEFLIKQFADDSGHTAAEFYTNRT 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L  
Sbjct: 177 VVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRN---LRL 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE    T A+    + +  +E          + +G TL+   F       +F   L+N
Sbjct: 224 YGQERNLLTSAIGRMNLFLHGIED-------FRLVRGDTLAGPAFVEGDRLMQFDVVLAN 276

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+  K   D+DA          GR   G P        F  H+   ++      GR AI
Sbjct: 277 PPYSIKQW-DRDA----WSADPWGRNIYGTPPQGRADYAFWQHIIKSMK---EDTGRCAI 328

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +ER
Sbjct: 329 LFPHGVLFRNE----ELAMREKLVGHDVVECVLGLGPNLFYNSPMEACVVICRMNKPKER 384

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRR 477
           RGKV  +NA +  T  R +      + ++   +I+  Y S  +   F+R++       + 
Sbjct: 385 RGKVLFLNAVNEVTRERAQS----FLTEEHILRIVAAYRSFTDEDSFARVVSTEEIAAKG 440

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +  PL +               I+ ++     Q   + + + M  
Sbjct: 441 SNLSIPLYVRVDHGHGNGNGAAETISLKETIVHWQESSMVLRESMDG 487


>gi|288937351|ref|YP_003441410.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella
           variicola At-22]
 gi|288892060|gb|ADC60378.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella
           variicola At-22]
          Length = 539

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 116/538 (21%), Positives = 207/538 (38%), Gaps = 79/538 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E
Sbjct: 15  FEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  ++   + K+ +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNDAELTKDPRFA-----GYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------------- 459
              +R+G+   I+A +L T I    +  + +  D    I D Y +               
Sbjct: 400 GYRDRQGETLFIDARNLGTMI---NRTTKELTADDIATIADTYHAWRSTPEELAERVKRG 456

Query: 460 --------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                   +   F ++            VL P R     ++     +  +I  R+LS 
Sbjct: 457 DSKLAQYEDQAGFCKVATIEEIKANE-NVLTPGRYVGAAEQEDDG-VAFEIKMRELSQ 512


>gi|215489628|ref|YP_002332059.1| predicted type I restriction-modification enzyme M subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215267700|emb|CAS12158.1| predicted type I restriction-modification enzyme M subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 518

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 214/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L + +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGNFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTNVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVAFETVVANDYNLSVSCYVEAKDNREIINIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|309797883|ref|ZP_07692264.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 145-7]
 gi|308118491|gb|EFO55753.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 145-7]
          Length = 520

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/557 (22%), Positives = 215/557 (38%), Gaps = 68/557 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 3   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 62  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 121

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 122 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 182 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 233

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 234 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 282

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 283 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 444 ASKEDVAHLAKSVAFETVVANDYNLSVSSYVEAKDTREIIDIAELNAELKTTVSKIDQLR 503

Query: 512 QSFWLDILKPMMQQIYP 528
           +     + +    ++  
Sbjct: 504 KDIDAIVAEIEGSEVQA 520


>gi|269793144|ref|YP_003318048.1| type I restriction-modification system, M subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100779|gb|ACZ19766.1| type I restriction-modification system, M subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 522

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/553 (22%), Positives = 210/553 (37%), Gaps = 73/553 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRSA 54
                A L   IW  A DL G     DF + +L     R +   +         E   + 
Sbjct: 6   KEQERAELHRTIWNMANDLRGSVDGWDFKQYVLGMLFYRYISENITAYINAGEWEAGNTE 65

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
                L+   +    E  VK  G+ F   SE   +         NL   +          
Sbjct: 66  FDYAKLSDEEAEQAREDLVKTKGF-FILPSELFENVRARAKDDENLNETLEQIFSNIEAS 124

Query: 108 ------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSN 157
                  DN K +F+D D +S       A    K+ K  + + E+      D       +
Sbjct: 125 AQGTESEDNFKGLFDDIDVNSNKLGNTVAKRNEKLVKLLNSVGEMKLGDYKDNTIDAFGD 184

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE L+  + S   +   ++ TP++V  L T L +     + K        +YDP CG+G
Sbjct: 185 AYEFLMGMYASNAGKSGGEYYTPQEVSELLTHLTIVGKTEVNK--------VYDPACGSG 236

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +                GQE+   T+ +C   M +  ++ D       +I 
Sbjct: 237 SLLLKFAKILGKENVRQG------FFGQEINITTYNLCRINMFLHDIDYDK-----FDIA 285

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+  KW+ D D +          RF P   L   S  
Sbjct: 286 LGDTLTDPQHWDDEPFEAIVSNPPYSIKWKGDSDPILIND-----PRFSPAGVLAPKSKA 340

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP
Sbjct: 341 DLAFIMHSLSWLAT----NGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNYIDCIIQLP 393

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IAT + +L   K++        I+A+  +  + N       +  +  + IL+
Sbjct: 394 DNLFYGTSIATCIMVLKKSKSD---NSTLFIDASKEFVKVTN----NNKLTQENIKNILN 446

Query: 455 IYVSREN-GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            Y+ R++   F+R++           + V   +      +K  +  L A+I   K+    
Sbjct: 447 TYIDRKDIEHFARLVPNSEIAEQDYNLSVATYVEQEDTREKIDIVALNAEI--EKIVARQ 504

Query: 512 QSFWLDILKPMMQ 524
           Q    +I K + +
Sbjct: 505 QILREEIDKIIAE 517


>gi|331655788|ref|ZP_08356777.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
 gi|331046562|gb|EGI18651.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
          Length = 518

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 128/549 (23%), Positives = 213/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEADDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAALDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   T     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFTEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD--ITWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A+  IT  K+  L 
Sbjct: 442 ASKEDVAHLAKSVAFETVVANDYNLSVSSYVEAKDTREIIDIAELNAELKITVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|184200169|ref|YP_001854376.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201]
 gi|183580399|dbj|BAG28870.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201]
          Length = 521

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 111/545 (20%), Positives = 206/545 (37%), Gaps = 70/545 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              T  A +L   +W  A+ L G+ + +++  V+L    L+ +    E  R  ++ +  A
Sbjct: 5   AAKTKPAKTLEQTLWDAADKLRGNQEPSEYKHVVLGLVFLKYVSDRFEERREQLKGELAA 64

Query: 62  FGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSD 109
            G     +ESF++          F+  S      + S   +       +     I   + 
Sbjct: 65  EGIKPERIESFLEDRDEYASQNVFWVPSLARWGYVQSVAKQPEIGQQIDQAMDLIEKENP 124

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFG 167
           + + +         + +      L ++      I      D   D V+  +YE+ + +F 
Sbjct: 125 SLRGVLPRNYGRDGLDK----RRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFA 180

Query: 168 SEV-SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A  F TPR VV     +L           P     +YDP  G+GG    +   
Sbjct: 181 GKETGKDAGAFYTPRSVVRTLVEML----------EPYKG-RVYDPAAGSGGMFVQSAEF 229

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   G        +  +GQE    T  +    + +R +E+D             + ++DL
Sbjct: 230 VKAHGGKR---TDISVYGQEFTDTTWKLAKMNLALRGIEAD------MGTHSADSFTEDL 280

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               R  + ++NPPF      D    +         R+  G P   + +  ++ H  + L
Sbjct: 281 HPDLRADFVIANPPFNVSDWWDAKLADD-------PRWKYGTPPKGNANFAWVQHFLHHL 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G A  VL++  L +  +G GE+  R+ L+E  L++ IVA+P  LFF T I   
Sbjct: 334 APY----GTAGFVLANGSLSSKSSGEGET--RQRLVEAGLVDCIVAMPDKLFFNTGIPVS 387

Query: 407 LWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--E 460
           LW +S  +       R+G+V  I+A  L    R E +K R++++D   +I   Y +    
Sbjct: 388 LWFVSKGRDGNGHRARKGEVLFIDARKLG---RMESRKLRVLDNDDIGKIAGTYHAWRDH 444

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK-----TGLARLEADITWRKLSPLHQSFW 515
           +G +       T   +  K+    +  F+L          A ++ +    K+  L    +
Sbjct: 445 DGGY----QNETGFAKAAKIEEIEKHDFVLTPGRYVGAAEAEVDDEPIDEKIERLTTELF 500

Query: 516 LDILK 520
            +  +
Sbjct: 501 AEFER 505


>gi|170682082|ref|YP_001744301.1| type I restriction-modification system, M subunit [Escherichia coli
           SMS-3-5]
 gi|170519800|gb|ACB17978.1| type I restriction-modification system, M subunit [Escherichia coli
           SMS-3-5]
          Length = 523

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/549 (22%), Positives = 213/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVAFETVVANDYNLSVSSYVEAKDNREIINIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|37528149|ref|NP_931494.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787586|emb|CAE16691.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 518

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/539 (22%), Positives = 211/539 (39%), Gaps = 68/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT  T   A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-STQQRAELQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDESIN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      D++         F   S+   +   + N  +NL   + S          
Sbjct: 60  YAELSDAVITDDIKDDAIKTKGYFIYPSQLFANIAENANKNDNLNKDLNSIFVAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                   K +F DFD +S        +K   L  + K  +G++    ++    +  + Y
Sbjct: 120 GYPSEAEIKGLFADFDTTSNRLGNTVKDKNTRLAAVLKGVAGLKFGQFESNKIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTSVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H                 GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDAHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIMLG 280

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F   K F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 281 NTLTEPHFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D+   QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDTT---TQFIDASPLFKKETN----NNILTDNHIEQIMQVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPL 510
            S+++   F++ + +           V   +      +   + +L A++  T +K+  L
Sbjct: 442 DSKDDVEHFAKSVSFEAIAANDYNLSVSSYVEARDNREVIDITKLNAELKTTVKKIDQL 500


>gi|198242593|ref|YP_002218397.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205355247|ref|YP_002229048.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207859652|ref|YP_002246303.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|1679866|emb|CAA68057.1| Sty SBLI [Salmonella enterica]
 gi|197937109|gb|ACH74442.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205275028|emb|CAR40114.1| Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206711455|emb|CAR35839.1| Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626205|gb|EGE32550.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326630410|gb|EGE36753.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 539

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 107/466 (22%), Positives = 191/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W  A  L G  + +++  V+L    L+ +    E  R  + ++     G  +++E
Sbjct: 15  FEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQMEDEG---QGDFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   + + K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  ++   + K+ +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNDAELTKDPRFA-----GYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  +      SGE+EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEAEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               R+G+   I+A +L T I    +  + +  D    I D Y + 
Sbjct: 400 GYRNRQGETLFIDARNLGTMI---NRTTKELTADDIATIADTYHAW 442


>gi|187736904|ref|YP_001816642.1| HsdM [Escherichia coli 1520]
 gi|172051486|emb|CAP07828.1| HsdM [Escherichia coli]
          Length = 520

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 214/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 3   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 62  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 121

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 122 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  
Sbjct: 182 EFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTSVNK--------IYDPAAGSGSL 233

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 234 LLQAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 282

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 283 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 444 ASKEDVAHLAKSVAFETVVANDYNLSVSCYVEAKDNREIINIAELNAELKTTVSKIDQLR 503

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 504 KDIDAIVAE 512


>gi|229822392|ref|YP_002883918.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229568305|gb|ACQ82156.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 541

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 182/479 (37%), Gaps = 63/479 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R+ +  +  A G  
Sbjct: 16  TTMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRAVIAAELAADGIG 75

Query: 66  NIDLESFVKV-----AGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAIF 115
                  ++      A   F+         L              ++ I    D A  + 
Sbjct: 76  EEQAGPLLEEVDEYRAAGVFWVPPRARWGYLAQHAKGRPAGDPEGQATIGELVDEAMVLI 135

Query: 116 EDFD--FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRF 166
              +   ++T+ ++          L ++   F+      D       V+  +YE+ + +F
Sbjct: 136 MGTNPALATTLPQIFNKENVDQRRLGELIDLFNSARFTGDGARKARDVLGEVYEYFLGKF 195

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP                 +    P     +YDP CG+GG    A   
Sbjct: 196 AAAEGKRGGEFYTPPG----------VVRVLVEVLEPYRG-RVYDPCCGSGGMFVQAEKF 244

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +   G     P  +  +GQEL   T  +    + +  L +          + G T ++D+
Sbjct: 245 IERHGED---PQAISVYGQELNERTWRMAKMNLAVHGLTA------QLGPRWGDTFARDV 295

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +  + ++NPPF  K            +N E  R+  G+P   + +  ++ H+ +KL
Sbjct: 296 HPDVQMDFVMANPPFNIKDWA---------RNAEDARWKFGVPPAGNANYAWIQHILSKL 346

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG A +V+++  + +   G  E EIR  L+E DL+  +VALPT LF  T I   
Sbjct: 347 ----APGGSAGVVMANGSMSSNSVG--EGEIRAALVEVDLVSCMVALPTQLFRSTGIPVC 400

Query: 407 LWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +W  +  K        +R G+V  I+A +L   +    +  R ++D+   +I   + + 
Sbjct: 401 VWFFAKSKAAGASGSVDRTGQVLFIDARNLGHMV---TRAERELSDEDIARIAGTFHAW 456


>gi|94970784|ref|YP_592832.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345]
 gi|94552834|gb|ABF42758.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345]
          Length = 511

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/476 (22%), Positives = 184/476 (38%), Gaps = 60/476 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T S       +W  A+ L  +    ++  V+L    L+ +  A E  + A  E+ +
Sbjct: 1   MANGTISEID-EAKLWSMADALRNNMDAAEYKHVVLGLIFLKYISDAFEA-KHAELEQKM 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    D + +  V+   F+   E   + L      N  +  I +  D+A A  E  D 
Sbjct: 59  DQGADPEDPDEYRAVS--IFWVPREARWAHLKD----NAPQPKIGTLVDDAMAAIER-DN 111

Query: 121 SSTIARLEK--------AGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVS 171
            S    L K           L ++    SGI L  P      ++  +YE+ + +F S   
Sbjct: 112 QSLKGVLPKDYARPGLDKQRLGQLINLVSGIGLGTPAARAKDILGRVYEYFLAQFASAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L                 +YDP CG+GG    +   +    
Sbjct: 172 KKGGQFYTPSHVVRILVEMLAPYKG-----------RVYDPCCGSGGMFVSSEKFIE--- 217

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +H      +  +GQE    T  +    + IR +++         IQ G T   D     +
Sbjct: 218 AHSGKLGDISIYGQESNYTTWRLAKMNLAIRGIDA--------QIQHGDTFHNDRHPDLK 269

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPF     + +          E  R+  G+P   + +  ++ H    L     
Sbjct: 270 ADCVLANPPFNDSDWRGELL-------KEDKRWVFGVPPAGNANFAWIQHFIYHL----A 318

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL++  +      SGE EIR+ ++E+DL++ +VALP  LF+ T I   LW ++
Sbjct: 319 PTGLAGFVLANGSMST--NTSGEGEIRKGIIESDLVDCMVALPGQLFYSTGIPVCLWFVA 376

Query: 412 NRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             K+      RRG+   I+A    + I    +  R ++D    +I   Y +    +
Sbjct: 377 RSKSSGRFRNRRGETLFIDARKFGSLI---DRVHRELSDADVAKIAGTYHAWRGDE 429


>gi|293417767|ref|ZP_06660389.1| type I restriction-modification system [Escherichia coli B185]
 gi|291430485|gb|EFF03483.1| type I restriction-modification system [Escherichia coli B185]
          Length = 518

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/549 (22%), Positives = 213/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEKIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+++      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKKDVAHLAKSVTFETVVANDYNLSVSSYVEAKDTREIIDIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|18202542|sp|Q47163|T1MP_ECOLX RecName: Full=Type I restriction enzyme EcoprrI M protein;
           Short=M.EcoprrI
 gi|450688|emb|CAA53205.1| hsdM gene of EcoprrI [Escherichia coli]
          Length = 520

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 126/549 (22%), Positives = 213/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 3   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 62  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 121

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 122 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 182 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 233

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 234 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 282

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 283 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 444 ASKEDVAHLAKSVAFETVVANDYNLSVSSYVEAKDTREIIDIAELNAELKTTVSKIDQLR 503

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 504 KDIDAIVAE 512


>gi|300821375|ref|ZP_07101523.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 119-7]
 gi|331680405|ref|ZP_08381064.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
 gi|300526264|gb|EFK47333.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 119-7]
 gi|331071868|gb|EGI43204.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
          Length = 518

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 126/549 (22%), Positives = 215/549 (39%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+    ++ + + T         V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVTFETVVANNYNLSVSSYVEAKENREIIDIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|325924159|ref|ZP_08185721.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
 gi|325545355|gb|EGD16647.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
          Length = 519

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/527 (22%), Positives = 210/527 (39%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A+L N IWK A D+ G     DF + +L     R +        +       Y A  
Sbjct: 5   QQRAALQNQIWKIANDVRGAVDGWDFKQYVLGTLFYRFISENFIAYITGGDASVDYAAMA 64

Query: 64  GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             +  +E+     +K  GY  Y  S+  ++     NT   L + +A+             
Sbjct: 65  DDDESIEAAKDDAIKTKGYFIY-PSQLFVNVAAKANTNERLNTDLANIFKAIEASASGYS 123

Query: 108 -SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
              + K +F DFD +S        +K   L  + K  + ++          +  + YE L
Sbjct: 124 SEQDIKGLFADFDTTSNRLGNTVKDKNTRLAAVLKGVAALDFGGFYASHIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQQVSKLIAQLAMHGQTSINK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G+TL
Sbjct: 236 AKKQFEDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FHIHLGNTL 284

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            +  F   K F   +SNPP+  KW   +D            RF P   L   S     F+
Sbjct: 285 IEPHFGDDKPFDAIVSNPPYSVKWIGSEDPTLINDD-----RFAPAGVLAPKSKADFAFV 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E++++L  +LF+
Sbjct: 340 LHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVESVISLAPNLFY 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +LS  KT+      Q I+A+ L     N      ++ D+  ++I+ ++ S+
Sbjct: 393 GTTIAVNILVLSKHKTDTA---TQFIDASGLLKKGTN----NNLLLDEHIKEIMAVFGSK 445

Query: 460 EN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
            N   F++ +          ++ V   +      +   +A+L +++ 
Sbjct: 446 ANVEHFAKTVTLDQVAANDYKLSVGSYVEAKDNREVVNIAQLNSNLR 492


>gi|322369760|ref|ZP_08044323.1| type I restriction-modification system, M subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320550678|gb|EFW92329.1| type I restriction-modification system, M subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 520

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 123/538 (22%), Positives = 217/538 (40%), Gaps = 45/538 (8%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T   A+L + +W+ A+ L G     D+   I     L+R+    E     + E+Y   
Sbjct: 14  QQTLDLATLESHLWEAADILRGSIDAADYKNYIFGLLFLKRINDRFEEETEEIAEEY--- 70

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIFE 116
            G + D  +  +     F+         + +  T+    L   +A+  D     A  +  
Sbjct: 71  -GIDEDTVAHDRDLHEEFWVPERAHWDHIAAQDTDIGATLNKALAAVEDENDAIADRVLT 129

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAE 175
             DF+    RL  A L  ++  +F+      + + D  +    YE+LIR+F  +  +   
Sbjct: 130 SVDFNDK-DRLSDATLD-ELVTHFTKHRYRNEDLEDPDIFGRAYEYLIRQFADDAGKKGG 187

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR+VV L    +           P     +YDP CG+GG L  +  HV   G    
Sbjct: 188 EFYTPREVVQLLVDCV----------DPEEGDRVYDPACGSGGMLIYSAQHVEQEGGDR- 236

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T A+    +L+  L+           +       D    + F   
Sbjct: 237 --DDISLYGQEKNLNTWAIGQMNVLLHELQDAKIAKGDTITEPKFVTEHD--ELEVFDRV 292

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPP+ +K    +   E E       RFG GLP  + G   ++  +   L    +  G+
Sbjct: 293 VANPPWNQKKWSKEWVQENE----PYNRFGYGLPPKNRGDWSWIQLMLASL----SETGK 344

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A IV+ +  LF  R+   E +IR+ +LE DLIEA++ALP +LF+ T     + I++  K 
Sbjct: 345 AGIVMDNGVLFRSRS---EKKIRKPILEADLIEAVIALPENLFYNTGSPGCILIMNKDKP 401

Query: 416 EERRGKVQLINA-----TDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLD 469
           EER+GKVQ I A      +    +  E   +  +  +    + + +++ RE    SR++D
Sbjct: 402 EERKGKVQFIYAEDQTLRESGVQVFEELSNQNQLTQEGVEYLAETHLTGREEDHHSRLVD 461

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                     +  P  +     +  +   E      +L+   +    +  + M +  Y
Sbjct: 462 LEEIEENDWNLNVPRYVDTTEPEEPIDVSEKLRELDELAEERRKTDEEFQQYMEELEY 519


>gi|160945140|ref|ZP_02092366.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442871|gb|EDP19876.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii
           M21/2]
          Length = 525

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 122/533 (22%), Positives = 207/533 (38%), Gaps = 69/533 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------- 54
           T+       L   IW  A+DL G     DF   +L     R +   +    +        
Sbjct: 9   TKKEQEREELHRAIWAIADDLRGAVDGWDFKSYVLGTMFYRYISENIASYINQGEIDAGN 68

Query: 55  --VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSD 109
              R + ++   +    E  V+  G+    +  +      +    N    LE+      +
Sbjct: 69  PDFRYEDMSDAEAEQAREGLVQEKGFFILPSELFCNVRAKAASDENLNETLETVFRHIEE 128

Query: 110 NAKAI---------FEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV---MS 156
           +AK           F+D+D +S       A    K+ K  +G+ +++   V +       
Sbjct: 129 SAKGSSSEGQFAGLFDDYDVNSNKLGATVAKRNEKLVKLLNGVADMNLGDVKEHDIDAFG 188

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP CG+
Sbjct: 189 DAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKEINK--------VYDPACGS 240

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A   +      +         GQE+   T+ +C   M +  +E D       +I
Sbjct: 241 GSLLLKAEKVLGRDAVRNG------FFGQEINITTYNLCRINMFLHDIEFDK-----FDI 289

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
               TL+       + F   +SNPP+  KW  D++ +          RF P   L   S 
Sbjct: 290 ACEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDENPLLIND-----PRFAPAGVLAPKSK 344

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ L
Sbjct: 345 ADLAFIMHSLAWL----ASNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFIDCIIQL 397

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+IAT + +L   KT+    KV  I+A+     + N       +  +   +I+
Sbjct: 398 PSNLFFGTSIATCIMVLKKGKTD---NKVLFIDASSECVKVTN----NNKLTPENINKIV 450

Query: 454 DIYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           D +  R E   FS + +Y           V   +      +K  + +L A+I 
Sbjct: 451 DTFAQRTEEAHFSHLAEYSEVQENDYNLSVSTYVEAKDTREKIDIVKLNAEIA 503


>gi|148976278|ref|ZP_01813002.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
 gi|145964372|gb|EDK29627.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
          Length = 515

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 195/505 (38%), Gaps = 51/505 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGG 64
              +   +W   +   G    + +   IL    L+ +    +     + +++        
Sbjct: 13  QEQVNKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKFDELSKQFNGNEQMIT 72

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           + +  +SF    G +F++  E        +     L +   +     K +F+D  F++  
Sbjct: 73  AMMSKQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQDISFNTDK 132

Query: 125 ARLEK--AGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F T
Sbjct: 133 LGDEKQKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYT 192

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +V  L + +L           P    ++ DP CG+G  L      V    +  K    
Sbjct: 193 PPEVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQKNFAGSK---Q 239

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHY 294
               GQE    T ++    M +   +       +  I+ G T+       K      F  
Sbjct: 240 YALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDKEGGLLHFDV 292

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG-- 352
             +NPPF       +DA      N   GRF  G+P    G   F+ H+   L+    G  
Sbjct: 293 VTANPPFSLDKWGFEDA-----GNDHFGRFRRGIPPKIKGDYAFISHMIETLKPASQGKK 347

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGR  +V+    LF   +   E +IR+ L++ +L++ ++ LP  LFF T I   + I   
Sbjct: 348 GGRMGVVVPHGVLFRASS---EGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILIFKK 404

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYR 471
           +K +    KV  I+A+  + S +N    +  +  +  ++I+D Y +RE   K+S +    
Sbjct: 405 QKDD---NKVLFIDASREFKSGKN----QNQLTPENIQKIVDTYKARETTDKYSYLASLE 457

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLA 496
                   +  P  +    ++  + 
Sbjct: 458 EVAENDYNLNIPRYVDTFEEEEEID 482


>gi|300958237|ref|ZP_07170387.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 175-1]
 gi|300315090|gb|EFJ64874.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 175-1]
          Length = 518

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 212/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +  L A++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVTFETVVANDYNLSVSSYVEAKDNREIIDIGELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|254037298|ref|ZP_04871375.1| type I restriction-modification system [Escherichia sp. 1_1_43]
 gi|226840404|gb|EEH72406.1| type I restriction-modification system [Escherichia sp. 1_1_43]
          Length = 534

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 204/513 (39%), Gaps = 55/513 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +    +       +W  A  L G  + +++  V+L    L+ +    E  R  + +    
Sbjct: 4   SPTKKAGKGFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRKQLIDNG-- 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
              + +D++ F +     F+   +   S + +   ++++        S I   + +    
Sbjct: 62  -QEAFVDMDVFYQQ-DNVFFLPPDARWSYVKARAKQDDIAVIIDTALSTIEKRNASLTGA 119

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     +++   L    +N   +    +   + ++  +YE+ + +F +   +G 
Sbjct: 120 LPDNYFSRQGLEVKRLASLIDSIENIDTLANECELTEEDLVGRVYEYFLGKFAASEGKGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ VV L   +L                 +YDP CG+GG    ++  V    SH 
Sbjct: 180 GEFYTPKAVVTLLAEMLEPYQG-----------KIYDPCCGSGGMFVQSLKFVE---SHQ 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQEL   T+ +    + +R L        +   +   T   D     +  +
Sbjct: 226 GKSKDIAIYGQELTSTTYKLAKMNLAVRGLSG------NLGERPADTFFADQHPDLKADF 279

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K  +++  +  + +       G   P   + +  +++H+ +KL    +  G
Sbjct: 280 IMANPPFNLKNWRNEAELTNDPRFA-----GFRTPPTGNANYAWILHMLSKL----SEDG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  VL++  +      SGE EIR+ L+E+D IE ++ALP  LFF T I   +W +S  K
Sbjct: 331 TAGFVLANGSM--SSNTSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCMWFISKSK 388

Query: 415 T-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                    +RRG+   I+A +L T +    + ++ +  +    I D + +  + + S +
Sbjct: 389 KANPQYGYRDRRGETLFIDARNLGTMV---SRTQKELTKEDIATIADTFHAWRSSE-SEL 444

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              R      I V +    +       L  ++ 
Sbjct: 445 --KRRIEANEISVEQYQDQAGFCKVATLDEIKD 475


>gi|78777140|ref|YP_393455.1| Type I restriction-modification system M subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497680|gb|ABB44220.1| Type I restriction-modification system M subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 495

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/541 (20%), Positives = 215/541 (39%), Gaps = 65/541 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + +++ N +WK  +   G    +D+   +L    ++ L    +     ++ +Y   G
Sbjct: 2   QKTTQSTINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLDLLKAEY---G 58

Query: 64  GSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNNLESYIASFSDNAK----AIFED 117
                +E+ +K   +      T +Y +    + N    +   +    ++ +     IF  
Sbjct: 59  DKTDRIEAKLKREKFRLDESCTFDYLIKHKEAPNLGEIMNKVLERIEEDNRDKLEGIFRS 118

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171
            DF++        E+  +L  + ++FS   ++L P  +  + V+ + YE+LI  F S+  
Sbjct: 119 IDFNNKNKLGDTKERNTILKNLIEDFSDTRLDLRPSRLEGNDVIGDAYEYLISHFASDAG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +V  L   L+           P     +YDPTCG+G  L  A   +    
Sbjct: 179 KKGGEFYTPSEVSTLLAKLV----------EPKEGEMIYDPTCGSGSLLIKASKEIGSKN 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
                      +GQE   +T A+C   M +  +           I+ G T+   L     
Sbjct: 229 --------FRLYGQEKNGQTQALCKMNMFLHEIND-------AVIEWGDTIRNPLHLQDN 273

Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K F   ++NPPF      ++ A +        GRF  G P  S G   F++H+ + L 
Sbjct: 274 LLKTFDVVVANPPFSLDKWGEEIASD-----DSFGRFKYGTPPKSKGDYAFVLHMISSL- 327

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G+  ++L    LF G +   E +IR  L+E +L++ ++ LP++LFF T+I   +
Sbjct: 328 ---NSHGKMGVILPHGVLFRGAS---EGKIREKLIEQNLLDTVIGLPSNLFFGTSIPACI 381

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSR 466
            I    +       +  I+A+  +   +N    +  + D+   +I D Y +R E  K+S 
Sbjct: 382 LIFKKNRVH---NDILFIDASREFEKGKN----QNNLTDEHIAKIFDTYKNRSEIEKYSH 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +            +  P R     ++  +  L+A  T      +        +   ++++
Sbjct: 435 VATLEEIQENDYNLNIP-RYVDTFEEEEIIDLDATKTNIATIEIELVEIKSKMNGYLKEL 493

Query: 527 Y 527
            
Sbjct: 494 G 494


>gi|227356295|ref|ZP_03840683.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus
           mirabilis ATCC 29906]
 gi|227163405|gb|EEI48326.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus
           mirabilis ATCC 29906]
          Length = 534

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/507 (20%), Positives = 198/507 (39%), Gaps = 53/507 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +       +W  A  L G  + +++  V+L    L+ +    E  RS + +       + 
Sbjct: 9   TTKGFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRSQLIKNG---QEAF 65

Query: 67  IDLESFVKVAGYSF-YNTSEY-----SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +D++ F +     F    S +                +   S I   + +      D  F
Sbjct: 66  VDMDVFYQQDNVFFLPQVSRWSYVQERAKQDDIAVIIDTALSTIEKSNASLTGALPDNYF 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S      +K   L    +N + +        + ++  +YE+ + RF +   +G  +F TP
Sbjct: 126 SRQGLEPKKLASLIDSIENINTLATECGVGEEDLVGRVYEYFLGRFAASEGKGGGEFYTP 185

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L   +L                 +YDP CG+GG    ++  V    SH      +
Sbjct: 186 KSVVTLLAEMLEPYQG-----------KVYDPCCGSGGMFVQSLKFVE---SHQGKSKDI 231

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + +R L        +   +   T   D     +  + ++NPP
Sbjct: 232 AIYGQELTSTTYKLAKMNLAVRGLTG------NLGERPADTFFADQHPDLKADFIMANPP 285

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  +  + +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 286 FNLKDWRNEAELTNDPRFA-----GFRTPPTGNANYAWILHMLSKL----SEDGVAGFVL 336

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR+ L+E+D IE ++ALP  LFF T I   LW +S  K      
Sbjct: 337 ANGSM--SSNTSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKSKQASAKY 394

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +R+G+   I+A  L T I    + ++ +  +    I D + +  + + S +   R  
Sbjct: 395 GYRDRQGETLFIDARHLGTMI---SRTQKELTAEDIATIADTFHAWRSSE-SEL--KRRI 448

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEA 500
             + I + +    +       L  ++A
Sbjct: 449 ATKEIGIEQYQDQAGFCKVATLDDIKA 475


>gi|296270473|ref|YP_003653105.1| site-specific DNA-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296093260|gb|ADG89212.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobispora bispora DSM 43833]
          Length = 540

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 107/475 (22%), Positives = 181/475 (38%), Gaps = 63/475 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L + +WK A+ L G      +   +L    L+ +  A E  R A+RE+ L  G   
Sbjct: 19  TMADLRDTLWKAADKLRGSMDAAQYKDFVLGLVFLKYVSDAFEERREAIREEILEQGIPE 78

Query: 67  IDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
             L+ F+           F+   E   S L +           +     I   + +   +
Sbjct: 79  SRLDMFLDDKDEYIGHGVFWVPEEARWSHLAAHAKSEGIGELIDRAMDAIMKSNQSLAGV 138

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                    + +      L ++           H D     V+  +YE+ + +F     +
Sbjct: 139 LPKIFNRDNVDQ----RRLGELVDLIGDARFTGHGDRPARDVLGEVYEYFLEKFARAEGK 194

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCG 231
              +F TP  VV L   +L           P     +YDP CG+GG    A   V A  G
Sbjct: 195 RGGEFYTPASVVKLLVEVL----------EPYAG-RVYDPCCGSGGMFVQAEKFVIAHRG 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             HK    +  +GQE    T  +    + I  +        +   +   T  +D     +
Sbjct: 244 IQHK--DDIAVYGQESNERTWRLAKMNLAIHGISG------NLGPRWADTFREDKHPDLK 295

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF               +  +  R+  G P  ++ +  +L H+ +KL     
Sbjct: 296 ADFVLANPPFNMSDWS---------RQVDDPRWRFGTPPANNANFAWLQHIISKLAER-- 344

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL++  + + +  SGE EIR  ++E DL+  +VALP  LF  T I   LW   
Sbjct: 345 --GTAGVVLANGSMSSKQ--SGEGEIRAAIVEADLVSCMVALPPQLFRTTQIPACLWFFD 400

Query: 412 NRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             K+        +RRG+V  I+A ++ T +    +  R++  D   +I D Y + 
Sbjct: 401 KDKSPQGAKRLADRRGEVLFIDARNMGTMV---DRTERVLTADDIARIADTYHAW 452


>gi|217974625|ref|YP_002359376.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS223]
 gi|217499760|gb|ACK47953.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS223]
          Length = 523

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 125/536 (23%), Positives = 208/536 (38%), Gaps = 73/536 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A L   IW  A D+ G     DF + +L     R +    E   +   E   
Sbjct: 1   MTSL-QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEAYITGGDESVN 59

Query: 59  YLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y A   S+ ++    +  ++  GY F   S+   +   + +   NL + +A+        
Sbjct: 60  YAAMDDSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLAAIFTAIENS 118

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHP-----DTVPDR 153
                   + K +F DFD +S         K   L  + K  +G+         +     
Sbjct: 119 ANSYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQID 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP 
Sbjct: 179 LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L  A  H                 GQEL   T+ +    M +  +  D      
Sbjct: 231 AGSGSLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK----- 279

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NIQ G TL++  F   K F   +SNPP+  KW    D            RF P   L  
Sbjct: 280 FNIQLGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAP 334

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +
Sbjct: 335 KSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETV 387

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N       ++++   
Sbjct: 388 ISLAPNLFFGTTIAVNILVLSKHKTDTT---TQFIDASGLFKKETN----NNTLSNEHIE 440

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           QI+ ++ S+E+   F++ +D          + V   +        T +  L  D+ 
Sbjct: 441 QIIKVFASKEDVDHFAKSVDLDVIAGNSYNLSVSSYVEAKDNRVVTNITELNRDLK 496


>gi|261368369|ref|ZP_05981252.1| type I restriction-modification system, M subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282569612|gb|EFB75147.1| type I restriction-modification system, M subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 509

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 112/530 (21%), Positives = 198/530 (37%), Gaps = 61/530 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-- 63
            +   +   +W   +   G    + +   IL    ++ L    +  R    ++Y      
Sbjct: 2   TTRNDIEQVLWSACDSFRGKIDSSRYKDYILSMLFVKYLSDVSKEKRQEYIQQYEGDMRR 61

Query: 64  -GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               +  E F      +F    ++   +         L       S   + +F   DF+S
Sbjct: 62  VERAMSRERFAMDEESTFDYLYDHRSESQIGQMINVALSRIEEYNSGKLRNVFRAIDFNS 121

Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +      EK   L  + ++F  ++L P  +    ++ + YE++I  F S+  +   +F 
Sbjct: 122 QVDFGEVKEKNATLRNLLEDFHKLDLRPSQLGSADIIGDAYEYMIAMFASDAGKKGGEFF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  L  +L+           P     +YDPTCG+GG L  A   V           
Sbjct: 182 TPSQVSELVASLV----------KPKENDRIYDPTCGSGGLLLKAYKKVP--------SG 223

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHY 294
            +  +GQEL  +T A+C   M +  ++          I QG TLS           +F  
Sbjct: 224 KVAIYGQELNAQTWALCTMNMFLHGVDD-------ARIWQGDTLSNPQNIENDKLMKFQV 276

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN----------GELGRFGPGLPKISDGSMLFLMHLAN 344
            ++NPPF           + E  +              RF  G+P  S G   F++H+  
Sbjct: 277 VVANPPFSLDKWDSGFLTDVEADSKGKKKMTAELDPYHRFDWGVPPTSKGDYAFVLHMLA 336

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      GR AIVL    LF    G+ E +IRR L+E +L++A++ LP +LF+ T I 
Sbjct: 337 SLDAE---NGRMAIVLPHGVLFR---GASEGKIRRQLVEMNLLDAVIGLPANLFYGTGIP 390

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             + +    + +     V  I+A+        +GK + I+ D    +I+  Y   E   K
Sbjct: 391 ACILVFKKNRPQR---DVLFIDAS--GEGNFEKGKNQNILRDTDIARIVSTYEKWETVDK 445

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +S +            +  P    ++        ++ D   R ++ +   
Sbjct: 446 YSYLASLDEIRENDFNLNIP---RYVDTFEEEELVDIDKVQRNIANIEAE 492


>gi|120401062|ref|YP_950891.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1]
 gi|119953880|gb|ABM10885.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1]
          Length = 544

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 105/478 (21%), Positives = 188/478 (39%), Gaps = 62/478 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G   
Sbjct: 17  TMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLDA 76

Query: 67  IDLESFVKVA----GYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +E  ++      GY  +     +     + N +            I    D A     
Sbjct: 77  EQIEDLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAMDAVM 136

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        D     +M  +YE+ +  F 
Sbjct: 137 KANPTLQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFLGNFA 196

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L           P     +YDP CG+GG        +
Sbjct: 197 RAEGKRGGEFFTPPSVVKVIVEVL----------EPSRG-RVYDPCCGSGGMFVQTEKFI 245

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H   P  +  +GQE   ET  +    + I  ++     +     + G T ++D  
Sbjct: 246 YE---HDGDPKEIAVYGQESIEETWRMAKMNLAIHGID-----NKGLGARWGDTFARDQH 297

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y L+NPPF  K            +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 298 PDVQMDYVLANPPFNIKDWA---------RNEEDARWRFGVPPANNANYAWIQHILYKL- 347

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG+A +V+++  + +   G  E +IR  ++E DL+  ++ALPT LF  T I   +
Sbjct: 348 ---ASGGKAGVVMANGSMSSNSNG--EGDIRAQIVEADLVSCMIALPTQLFRSTGIPVCV 402

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           W  +  KT       +R G+V  I+A ++   +    +  R ++DD   +I D + + 
Sbjct: 403 WFFAKDKTAGKQGSVDRSGQVLFIDAREMGYMV---DRAERALSDDDIVKIGDTFHAW 457


>gi|114563124|ref|YP_750637.1| type I restriction-modification system, M subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|114334417|gb|ABI71799.1| type I restriction-modification system, M subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 523

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 126/548 (22%), Positives = 213/548 (38%), Gaps = 75/548 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A L   IW  A D+ G     DF + +L     R +    E   +   E   
Sbjct: 1   MTSL-QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFELYITGGDESVN 59

Query: 59  YLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y A   S+ ++    +  ++  GY F   S+   +   + +   NL + +A+        
Sbjct: 60  YAAMDDSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLATIFAAIENS 118

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHP-----DTVPDR 153
                   + K +F DFD +S         K   L  + K  +G+         +     
Sbjct: 119 ANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQID 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP 
Sbjct: 179 LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L  A  H                 GQEL   T+ +    M +  +  D      
Sbjct: 231 AGSGSLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK----- 279

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NIQ G TL++  F   K F   +SNPP+  KW    D            RF P   L  
Sbjct: 280 FNIQLGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAP 334

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L    +  GRAAIV      +    G  E +IR++L++N+ +E +
Sbjct: 335 KSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYR---GGVEQKIRQYLVDNNYVETV 387

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N       ++++   
Sbjct: 388 ISLAPNLFFGTTIAVNILVLSKHKTDTT---TQFIDASGLFKKETN----NNTLSNEHIE 440

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWR 505
           QI+ ++ ++EN   F++ +D          + V   +      +   +  L A++  T  
Sbjct: 441 QIIKVFANKENVDHFAKSVDLDVIAGNSYNLSVSSYVEAKDNRELVDITELNAELKTTVA 500

Query: 506 KLSPLHQS 513
           K+  L + 
Sbjct: 501 KIDALRRD 508


>gi|34557510|ref|NP_907325.1| type I site-specific deoxyribonuclease [Wolinella succinogenes DSM
           1740]
 gi|34483227|emb|CAE10225.1| TYPE I SITE-SPECIFIC DEOXYRIBONUCLEASE [Wolinella succinogenes]
          Length = 520

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 111/539 (20%), Positives = 210/539 (38%), Gaps = 71/539 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFGGSN 66
           L   +W  A  L G     +F   IL F   + L   +E     + ++    YL+   ++
Sbjct: 9   LEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKMEYYADEILKEDEIGYLSLDENS 68

Query: 67  ID--------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--------------SYI 104
            +         E  ++  GY    +  ++         +NN                +  
Sbjct: 69  AEGQEYLEAIREEAIEKLGYFLKPSELFTQIAKRGNGDKNNFILEDLTKILRRIEQSTMG 128

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               D+   +FED D SST        K  L+ K+  +   I          V+ + YE+
Sbjct: 129 HESEDDFVHLFEDLDLSSTKLGKTEEAKNALIAKVLFHLDQINFELKNHDRDVLGDAYEY 188

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F +   + A +F TP+ V  +   ++ +    L        +++YDPTCG+G  L 
Sbjct: 189 LIAQFAAGAGKKAGEFYTPQQVSKILAKIVTNGKSKL--------KSVYDPTCGSGSLLL 240

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                V+D         +   +GQEL   T+ +    M++  +          +I+Q  T
Sbjct: 241 RVAKEVSD---------VSAFYGQELNRTTYNLARMNMIMHDVHYRK-----FDIKQEDT 286

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L        +F   ++NPPF   W  +         +    ++G  L   S     F+ H
Sbjct: 287 LEHPQHGAMKFEAIVANPPFSAHWSANPL----HMSDDRFSQYGV-LAPSSKADFAFVQH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L    +  G  AIVL    LF G +   E  IRR+L+EN + ++A++ LP ++F+ 
Sbjct: 342 MIHHL----DENGTMAIVLPHGVLFRGSS---EGTIRRYLIENKNYLDAVIGLPANIFYG 394

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459
           T+I T + +   +K  E    +  I+A++ +   +N    + I+ D+   +I+  Y +R 
Sbjct: 395 TSIPTSILVF--KKCREDSEHILFIDASNDFEKAKN----QNILTDEHVEKIITTYKNRI 448

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E  ++S +            +  P  +    ++  +         R++    ++    I
Sbjct: 449 EIERYSHLAPLSEIAQNDYNLNIPRYVDTFEEEEAIDLEAVTRELREIDEQMKTTDATI 507


>gi|300819089|ref|ZP_07099292.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 107-1]
 gi|300528389|gb|EFK49451.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 107-1]
          Length = 518

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 126/549 (22%), Positives = 213/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVAFEAVVANDYNLSVSSYVEAKDNREIINIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|291289376|ref|YP_003517708.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Klebsiella pneumoniae]
 gi|290792337|gb|ADD63662.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Klebsiella pneumoniae]
          Length = 520

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 214/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 3   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 62  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 121

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 122 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  
Sbjct: 182 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSL 233

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 234 LLQAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 282

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 283 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 444 ASKEDVAHLAKSVAFETVVANDYNLSVSCYVEAKDNREIINIAELNAELKTTVSKIDQLR 503

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 504 KDIDAIVAE 512


>gi|326334517|ref|ZP_08200728.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693286|gb|EGD35214.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 515

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 118/530 (22%), Positives = 202/530 (38%), Gaps = 64/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT        L   IWK A ++ G     DF + +L     R +        E    +V+
Sbjct: 1   MT-SIKQREELQAAIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTNFIEGGDESVQ 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+  ++   + NT +NL + +A+          
Sbjct: 60  YAELPDEAITPEIKDDATKTKGYFIYPSQLFVNVAKNANTNSNLNTDLAAIFSAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        EK   L  +    +G+     +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVEEKNKRLAAVVNGVAGLSFGDFENHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP++V  L   L L    ++ K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQNVSKLIAQLALLGQSSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  D              GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDDYQIEEG------FFGQEINHTTYNLVRMNMFLHNINYDK-----FNIALG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL    F  ++ F   +SNPP+   W    D            RF P   L   S    
Sbjct: 281 DTLINPCFGDEKPFDAIVSNPPYSVNWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++ALP +
Sbjct: 336 AFVLHSLSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNYVETVIALPPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K +    + Q I+A+        +     ++ DD    I+ I+
Sbjct: 389 LFYGTSIAVNILVLSKHKPDT---QTQFIDAS--GEDFFKKETNNNVLTDDHIAHIVSIF 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E     +  +D +          V   +      +   + +L A++ 
Sbjct: 444 ADKEAVPHTAVQVDNQQIAENDYNLSVSSYVEAKDTREVIDIQQLNAEVA 493


>gi|206603733|gb|EDZ40213.1| N-6 DNA methylase [Leptospirillum sp. Group II '5-way CG']
          Length = 524

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 105/531 (19%), Positives = 186/531 (35%), Gaps = 71/531 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +W+ A+ L  +    ++  V+L    L+ +  + E   + +  +           E
Sbjct: 17  LETKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTGEMDQGANPEDPDE 76

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-------ST 123
                A   F+   E   S L +   R  +   I    D+A    E  + S         
Sbjct: 77  ---YRADNVFWVPKEARWSVLQANAKRPEIGKVI----DDAMVAIERDNTSLKAVLPKDF 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                    L ++      I L         ++  +YE+ + +F S   +    F TPR 
Sbjct: 130 ARPGLDKQRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSQFASAEGKKGGQFYTPRS 189

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV +   +L                 +YDP CG+GG    +   +   G        +  
Sbjct: 190 VVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEVHGGRIG---DISI 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + +      +   +   +  +DL    +  Y L+NPPF 
Sbjct: 236 YGQESNHTTWKLAAMNLAIRGIAA------NLGKENADSFHRDLHPDLKADYILANPPFN 289

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                         +  E  R+  G+P + + +  ++ H  + L       G A  VL++
Sbjct: 290 SSDWGG-------DRLREDRRWVYGVPPVGNANFAWVQHFISHL----APNGVAGFVLAN 338

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L + +  SGE EIR+ ++E D+++ IVALP  LF+ T I   LW +S  K        
Sbjct: 339 GSLSSNQ--SGEGEIRKNMVEGDIVDCIVALPGQLFYSTQIPVSLWFVSRNKKNGKGQEG 396

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGK 463
               +R G++  I+A  L        +  R ++D+   +I   Y            +   
Sbjct: 397 HALRDRSGEILFIDARKLGFMA---DRTHRDLSDEDIAKIAGTYHHWRGDGDGQYEDIPG 453

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           F +             VL P R     +         +   R  + L + F
Sbjct: 454 FCKKASLEEVRTH-GHVLTPGRYVGAEEVEDDGEPFEEKMKRLTTQLDEQF 503


>gi|198284106|ref|YP_002220427.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665706|ref|YP_002426761.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248627|gb|ACH84220.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517919|gb|ACK78505.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 537

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 112/561 (19%), Positives = 200/561 (35%), Gaps = 60/561 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MTE   +   L N +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTE--QNQKQLGNTLWSIADQLRGAMDADDFRDYMLSFLFLRYLSDNYETAAKKELGRDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----------- 95
                        L +  +  D+ +F K      +   + +       N           
Sbjct: 59  PDVGGDARKVPLALWYANNVDDIPAFEKQMRRKVHYVIQPAHLWNSIANLARTQNPDLLD 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD- 152
           T      YI   SF    + +F + D SS       +    K+C     I          
Sbjct: 119 TLQAGFKYIETESFESTFQGLFSEIDLSSPKLGKSYSDRNAKLCTIIQKIAEGLAAFSTN 178

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++          +   + ++ D
Sbjct: 179 IDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLDSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDP 268
             CG+G  L +    V   G           +GQE    T+ +    ML+  +   E + 
Sbjct: 239 FACGSGSLLLNVRKKVNQAGGSIG-----KIYGQEKNITTYNLARMNMLLHGVKDTEFEI 293

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +   +      ++      F   ++NPPF  +WE      +             GL
Sbjct: 294 FHGDTLLNEWDMLREQNPARKPSFDAVVANPPFSYRWEPTDALADDVRFKSH------GL 347

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL+H  + L+      G  AI+L    LF G A   E  IR  LL++  I+
Sbjct: 348 APKSAADFAFLLHGFHYLK----DEGVMAIILPHGVLFRGGA---EERIRTKLLKDGHID 400

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP +LF+ T I   + +L   K  +    V  INA + +      GK++  ++D+ 
Sbjct: 401 TVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHFVK----GKRQNHLSDEH 453

Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I++ Y  R E  +++R +D          +     +S  +D+  +           +
Sbjct: 454 IAKIIETYQFRTEEPRYARRVDMAEIEKNDFNLNISRYISTAVDEEEIDLTATHANLVNI 513

Query: 508 SPLHQSFWLDILKPMMQQIYP 528
               Q       + + +   P
Sbjct: 514 EKAIQQATAKHNEFLKELGMP 534


>gi|152991448|ref|YP_001357170.1| type I restriction-modification system, M subunit [Nitratiruptor
           sp. SB155-2]
 gi|151423309|dbj|BAF70813.1| type I restriction-modification system, M subunit [Nitratiruptor
           sp. SB155-2]
          Length = 510

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 106/533 (19%), Positives = 200/533 (37%), Gaps = 51/533 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  S    +WK A+ L  +    ++  V+L    LR +  A E     ++    
Sbjct: 1   MAKKKQNGDSFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISEAFEDLYEKLKRGEG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
            + G++ +     + A   F+   E   S L             +N    I   + + K 
Sbjct: 61  EYAGADPEDIDEYR-AENVFFIPPEARWSHLKEKAKDPEIGKIIDNAMELIEKKNPSLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172
           +         I        L  +   FS I ++        ++ +++E+ +  F     +
Sbjct: 120 VLPKVYARGNI----DPIALGGLIDLFSNIAINEAKEKTSDILGHVFEYFLGEFALAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR VV L   +L                 ++DP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPRSVVELLVEMLEPYRG-----------RVFDPCCGSGGMFVQSEKFVQE--- 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE    T  +C   + IR ++S   R   +      +   D     + 
Sbjct: 222 HQGKINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVRWNPEG-----SFLNDAHKDLKS 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +   E         R+  G+P   + +  ++ H    L      
Sbjct: 277 DFVIANPPFNDSDWSGELLRED-------ARWKYGVPPAGNANYAWIQHFIFHL----AP 325

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL+   L   +    E EIR+ ++E+D+++ IV LP  LF  T I   LW L  
Sbjct: 326 HGKAGFVLAKGALTTKQ--KDEYEIRKNMIEDDIVDCIVNLPAKLFLNTQIPASLWFLRK 383

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            KT  R+G++  I+A D+   I    +++RI+  +  ++I D Y + +    S   D + 
Sbjct: 384 NKTT-RKGQILFIDARDMGKLI---NRRQRILTPEDIKKIADTYHTWQKED-SSYEDIKG 438

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           F  + + V     + ++L       L  +          +    + L  ++++
Sbjct: 439 F-CKSVSVDEVKGLDYVLTPGRYVGLAEEEDDFDFEERFEKLKQEFLSQLVEE 490


>gi|320450633|ref|YP_004202729.1| type I restriction-modification system subunit M [Thermus
           scotoductus SA-01]
 gi|320150802|gb|ADW22180.1| type I restriction-modification system, subunit M [Thermus
           scotoductus SA-01]
          Length = 523

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 114/521 (21%), Positives = 202/521 (38%), Gaps = 64/521 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            ++ N++W  A  + G      F   ILP   L+RL    E   + +  ++ +   +  D
Sbjct: 4   QTMENWLWSAACAIRGPVDAPKFKDYILPLIFLKRLSDVFEDEIARLSARFGSEKVA-RD 62

Query: 69  LESFVKVAGY----SFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFD 119
           L    +  G      FY   E     +     G      +    +A  +     + +  D
Sbjct: 63  LVEKERQRGNVTLVRFYIPEEARWEAIRRQTVGLGQFLTDAVRAVARENPQLAGVIDMVD 122

Query: 120 FSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F++T    R+     L  + +  S   L    V   ++   YE+L+R+F     + A +F
Sbjct: 123 FNATAAGQRIVSDEHLKSLIEVLSQHRLGLADVEPDILGRAYEYLLRKFAEGQGQSAGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V  L   LL           P    ++YDP CG+GG L      + +        
Sbjct: 183 YTPREVGILMARLL----------EPEPGMSVYDPACGSGGLLIKCHLRLVEKYGQKDPS 232

Query: 238 PILVP---------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             L            GQE+ P T A+     +I  +E+D         + G T+ +  F 
Sbjct: 233 GRLHLPSTIAPLRVFGQEINPATFAMARMNAVIHDIEADI--------RLGDTMRQPAFR 284

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F    +NP + +K+ ++       ++N    RF  G+P  S     +L H+ 
Sbjct: 285 DGSGRLQTFDLIAANPMWNQKFPQEL------YENDPFERFRYGVPPSSSADWGWLQHML 338

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400
             L    N  GR A+VL +  +  G    G   E +IR+  +E DL+EA++ LP +LF+ 
Sbjct: 339 ASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRKAFVEADLVEAVILLPENLFYN 394

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T     + +++ RK     G++ LINA+  +   R +      + ++    I ++Y   E
Sbjct: 395 TTAPGVILVINRRK--RHPGEILLINASQQFAKGRPK----NYLAEEHIETIAEVYHRWE 448

Query: 461 NGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
             +  S ++           +     +S    +  L   EA
Sbjct: 449 ARQGLSAIITREEGARNDYNLSPSRYVSTNGKEETLPLEEA 489


>gi|262369032|ref|ZP_06062361.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii
           SH046]
 gi|262316710|gb|EEY97748.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii
           SH046]
          Length = 533

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 117/527 (22%), Positives = 221/527 (41%), Gaps = 72/527 (13%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNIDLES 71
           W  A  L G     +F   IL F   + L        + + +     +L    +N +   
Sbjct: 25  WNIANTLRGTMGADEFRDYILGFIFFKYLSEKSVNFANELLDGEDLSFLELDENNPEHVP 84

Query: 72  FVK------VAGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFS---------DNA 111
           +++      +A   +  T +    TL           ++L + + S           D+ 
Sbjct: 85  YIEEIKKNAIAEVGYALTPKQLFHTLAERGRQGEFILDDLTATLKSIEQSTLGTDSADDF 144

Query: 112 KAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
             +FED D +ST       ++  L+ K+  +   I+         V+ + YE+LI  F S
Sbjct: 145 ANLFEDLDLNSTKLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYLIGEFAS 204

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP+ V  L   ++    D L        R++YDPTCG+G  L      V 
Sbjct: 205 GAGKKAGEFYTPQTVSTLLAKIVTQGKDRL--------RSVYDPTCGSGSLLLRVKREVK 256

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D           + +GQE+   T+ +    M++  +          +I+Q +TL++    
Sbjct: 257 DVD---------MIYGQEMNRTTYNLARMNMVLHDVHFAK-----FDIKQENTLTRPQHL 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K+F   ++NPPF  KW  D   ++ E +    G+  P     S   M F+ H+  +L  
Sbjct: 303 DKKFDAVVANPPFSAKWSADPLFLQDE-RFAAYGKLAP----SSKADMAFVQHMLYQL-- 355

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYL 407
             +  G  A+VL    LF G +   E  IR++L+E  ++++AI+ LP ++F+ T+I T +
Sbjct: 356 --DDNGTMAVVLPHGILFRGSS---EGVIRQYLIEQMNVVDAIIGLPANIFYGTSIPTCI 410

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            +L  +K+ E+ G +  I+A++ +   +N    +  +  +   +I+  +  REN  K++ 
Sbjct: 411 LVL--KKSREQSGNILFIDASNDFEKQKN----QNKLLPEHLDKIVAAFEKRENIEKYAH 464

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +   +        +  P    ++      A ++ D   ++L  L Q 
Sbjct: 465 VATLQEVKDNDYNLNIP---RYVDTFEAEAEIDLDAIAKQLQALEQD 508


>gi|261339076|ref|ZP_05966934.1| hypothetical protein ENTCAN_05288 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318911|gb|EFC57849.1| ribosomal protein L11 [Enterobacter cancerogenus ATCC 35316]
          Length = 539

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 188/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY       S +     ++NL        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEAARWSFIKQNAKQDNLAVLIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  ++   + ++ +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNDAELTEDPRFA-----GYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRARMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               R+G+   I+A +L T +    +  + +  D    I + Y + 
Sbjct: 400 GYRNRQGETLFIDARNLGTMM---NRTTKELTADDIATIAETYHAW 442


>gi|302878640|ref|YP_003847204.1| type I restriction-modification system, M subunit [Gallionella
           capsiferriformans ES-2]
 gi|302581429|gb|ADL55440.1| type I restriction-modification system, M subunit [Gallionella
           capsiferriformans ES-2]
          Length = 553

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 199/535 (37%), Gaps = 79/535 (14%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFGGSNID--- 68
           W  A  L G     +F   IL F   + L   ++    A   +    + A   S  +   
Sbjct: 36  WNIANTLRGKMGADEFRDYILGFIFYKYLSEKIQRFADAELAQENLHFAALKESTEEGRA 95

Query: 69  -----LESFVKVAGYSFYNTSEYSLSTLGSTN-------------TRNNLESYIASFS-- 108
                 E+ +   GY    +  +    +  +N                +L   + +    
Sbjct: 96  YIAALEEAALGELGYFLKPSELFHAIAMKGSNQEDEHKLGDSHNFILADLTRILKNIEQS 155

Query: 109 -------DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                  D+   +FED D +S+       EK  L+ K+  +   I+ +       V+ + 
Sbjct: 156 TLGTESADDFVNLFEDLDLTSSKLGNSEKEKNALVAKVLTHLDKIDFNLSDSTADVLGDA 215

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  F S   + A +F TP+ V  L   L+              ++++YDPTCG+G 
Sbjct: 216 YEYLIGEFASGAGKKAGEFYTPQPVSTLLAKLV--------TAQKQTLKSVYDPTCGSGS 267

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                      +GQEL   T+ +    M++  +          +I+Q
Sbjct: 268 LLLRVKREAKQVDK---------IYGQELNRTTYNLARMNMILHDVHY-----ADFDIKQ 313

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             TL +      RF   ++NPPF  +W   +        +     +G  L   S   M F
Sbjct: 314 EDTLERPQHRELRFDAIVANPPFSAQWSASQL----HMSDDRFSVYGK-LAPASKADMAF 368

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+  +L       G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++
Sbjct: 369 VQHMVYQL----AEEGTMAVVLPHGVLFRGAA---EGHIRQYLIEQLNCLDAVIGLPANI 421

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +   +K  +    +  I+A+  +  +    K   ++  +  ++I+D Y 
Sbjct: 422 FYGTSIPTCVLVF--KKCRKNPDNILFIDASQHFDKV----KTTNVMRPEHIQKIVDTYK 475

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           +R N  K+S +    +       +  P  +     +  +          +L    
Sbjct: 476 ARSNEEKYSHVASIESIKANDYNLNIPRYVDTFEAEEAIDLAVISAQLIELDKAS 530


>gi|331671460|ref|ZP_08372258.1| putative type I restriction-modification system, M subunit
           [Escherichia coli TA280]
 gi|331071305|gb|EGI42662.1| putative type I restriction-modification system, M subunit
           [Escherichia coli TA280]
          Length = 539

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 106/466 (22%), Positives = 188/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +R+GK   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRDRQGKTLFIDARNLGTMI---SRTTKELTTEDIATIADTYHAW 442


>gi|292491020|ref|YP_003526459.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291579615|gb|ADE14072.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 519

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 103/528 (19%), Positives = 187/528 (35%), Gaps = 61/528 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +WK+A+ L  +    ++  V+L    L+ +  A E   + + E    + G++
Sbjct: 12  TEEPLQKSLWKSADRLRKNMDAAEYKHVVLGLIFLKYISDAFEELHAKLSEGLGEYAGAD 71

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFD 119
            +     + A   F+       S L +           +     I   +   K +     
Sbjct: 72  PEDADEYR-AENVFFVPEGARWSYLQARAKLPGIGKDVDEAMEAIEKENPTLKGVLPKQY 130

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               + +     L          I L   T     ++  +YE+ +  F +   +    F 
Sbjct: 131 ARQNLDKASLGAL----IDLLGKIGLGDATARSRDILGRVYEYFLGEFAAAEGKKGGQFY 186

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L   +L           P     +YDP CG+GG    +   V     H     
Sbjct: 187 TPAAIVKLLVNML----------EPYKG-RVYDPCCGSGGMFVQSEKFVE---VHQGRID 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE    T+ +C   + IR ++    R   +      +   D     +  Y ++N
Sbjct: 233 DISIYGQESNQTTYRLCRMNLAIRGIDGSNVRWNGEG-----SFLNDAHKDMKAEYIIAN 287

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +   +         R+  G+P + + +  ++ H+   L       G   +
Sbjct: 288 PPFNDSDWSGELLRDD-------PRWQFGVPPVGNANFAWMQHMIYHL----APNGTLGL 336

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS----NRK 414
           VL++  L +     GE EIR+ ++E  L++ IVALP  LF+ T I   LW +S    N  
Sbjct: 337 VLANGSLSSNS--GGEGEIRKAIIEAKLVDCIVALPDKLFYNTGIPACLWFISHDRRNHN 394

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--------FSR 466
              R  ++  I+A +L   I    ++ R  +D+   +I D Y +  N          F +
Sbjct: 395 FRNREDEILFIDARNLGQMI---TRRNRDFSDEDIARIADTYHAWRNKDGGYEDVKGFCK 451

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                     +  VL P R   I D+        +   +    L    
Sbjct: 452 AATLEDVRKHK-HVLTPGRYVGIPDEEDDGVPFEEKMTKLTEELAAQM 498


>gi|307353814|ref|YP_003894865.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanoplanus petrolearius DSM 11571]
 gi|307157047|gb|ADN36427.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanoplanus petrolearius DSM 11571]
          Length = 500

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 111/527 (21%), Positives = 193/527 (36%), Gaps = 61/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   +A++E+  
Sbjct: 1   MAENNSANIGFEQEIWSAACVLRGNMDASEYKHVVLGLIFLKYISDKFEQKYNALKEEGD 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
            F     +      +A   FY   E     +        + + I    D+A    E  + 
Sbjct: 61  GFEEDEDEY-----LAEGIFYVPPEARWDAIAKKAHTPEIGTTI----DDAMRAIEKKNK 111

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                   T AR E     L ++   F+ I++        ++   YE+ + +F  +  + 
Sbjct: 112 RLKDILPKTFARPELDKRRLGEVVDLFTNIQMADHGDSKDILGRAYEYCLAKFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     +L                 +YDP CG+GG    +   + +   H
Sbjct: 172 AGEFYTPACVVKTIVEVLQPCQG-----------RVYDPCCGSGGMFVQSAIFIEN---H 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E+D             T   DL    +  
Sbjct: 218 RGNINNISVYGQDSNPTTWKMAQMNLAIRGIEAD------LGKFSADTFYNDLHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF           +         R+  G+P   + +  ++ H+   L       
Sbjct: 272 FIMANPPFNLSNWGADKLADD-------PRWKYGIPPSGNANFAWMQHMIYHL----APK 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L +     GE EIR+ ++E DL+E IVA+P  LF+ T I   LW ++  
Sbjct: 321 GRLGLVLANGSLSSQS--GGEGEIRKNIVEADLVECIVAMPPQLFYTTQIPVSLWFINRD 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K ++R  K   I+A +         +K R +  ++   I       E G       FS +
Sbjct: 379 KKQKR--KTLFIDARNKGEM---RTRKLRELTQEEIELIGKTVSQFEAGTLEEKKGFSAV 433

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +       +   +L P R   I D             R    L + F
Sbjct: 434 VSTEDIAKQDY-ILTPGRYVGIADVEDDGEPFEQKMERLTGELSELF 479


>gi|58038320|ref|YP_190289.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H]
 gi|58000734|gb|AAW59633.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H]
          Length = 508

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 115/537 (21%), Positives = 212/537 (39%), Gaps = 51/537 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S  ++   +W   +   G      +   +L    L+ +    +      +++Y 
Sbjct: 1   MTEQ-ISQDTINKALWSACDTFRGTVSPDTYRDYVLTMLFLKYISDVWQDHYDGYKKEYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKA 113
                  + +  E FV   G  FY   +   +          L +   +      D  K+
Sbjct: 60  DNPELIEAMMAQERFVLPKGSDFYTLYKDRNTPGNGERIDKALHAIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFSSTIARLEK--AGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F+S     EK    +L  + ++F+  +L+  P  V +  V+ N YE LI+ F +
Sbjct: 120 VFQDISFNSDKLGDEKQKNTILRHLLEDFAKPDLNLRPSRVGNLDVIGNGYEFLIKNFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   +L          SP    ++ DP CG+   L      V 
Sbjct: 180 SGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACGSASLLMKCGKQVT 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +HK       +GQE    T +     M +     D  R    +  +   L  D   
Sbjct: 230 Q---NHKGSKDYALYGQEAIGSTWSFAKMNMFLHG--EDNHRIEWGDTIRNPKLLDDKNH 284

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             RF    +NPPF       +DA E  H      RF  G+P  + G   F++H+ + L+ 
Sbjct: 285 LMRFDVVTANPPFSLDKWGHEDAAEDVH-----HRFARGVPPKTKGDYAFILHMISTLK- 338

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  GR  +V+    LF G +   E  IR+ L+E +L++A++ LP  LFF T I   + 
Sbjct: 339 --DRTGRMGVVVPHGVLFRGSS---EGRIRQKLIEENLLDAVIGLPEKLFFGTGIPAAIL 393

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           I    +  +    V  I+A+  + + +N    + ++ ++   +I+D Y +R++  K++ +
Sbjct: 394 IFRKDRKTK---DVLFIDASREFRAGKN----QNVLTEENITKIVDTYRARKDVDKYAHL 446

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                       +  P  +    ++  +     R+E      +L+ L       + +
Sbjct: 447 ATPDEIKENDYNLNIPRYVDTFEEEEEIDLNAVRMERAEIKAELAKLEAQMDAYLKE 503


>gi|224538865|ref|ZP_03679404.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519519|gb|EEF88624.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 528

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 114/533 (21%), Positives = 201/533 (37%), Gaps = 67/533 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IWK A+ L G+   +++  V+L    L+ +    E    A+  +  
Sbjct: 22  MAKTNTAEIGFEKEIWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFETKYQALIAE-- 79

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
              G   + +     +   F+   E   S +  T     + + I    DNA  + E  + 
Sbjct: 80  ---GDGFEEDKDEYTSENIFFVPQEARWSMIAKTAHAPEIGTVI----DNAMRLIEKENT 132

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L  +   F+ I++        ++   YE+ + +F     + 
Sbjct: 133 RLKGILPKNFARPELDKRRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKL 192

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L           P     +YDP CG+GG    +   +     H
Sbjct: 193 AGEFYTPACIVRTLVEVL----------QPYSG-RVYDPACGSGGMFVQSAKFIER---H 238

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D             T   D     +  
Sbjct: 239 QGNINSISVFGQDSNPTTWKMAQMNLAIRGIEAD------LGKFNADTFFDDQHPTLKAD 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               K     R+  G+P   + +  +L H+ + L    +  
Sbjct: 293 YILANPPFNLSDWG-------VDKLQGDVRWKFGIPPAGNANFAWLQHMIHHL----SPK 341

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L +     GE +IR  +++ DL+E IVALP+ LF+ T I   LW L+  
Sbjct: 342 GRIGMVLANGSLSSQS--GGEGKIRENIIKADLVEGIVALPSQLFYTTGIPVSLWFLNRT 399

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDD------QRRQILDIYVSR-----ENG 462
           K  ++ GK+  ++A ++ T +    +K R ++D         ++I + + +      EN 
Sbjct: 400 K--KQTGKILFVDARNMGTMV---TRKLRELSDSEEGEKGDIQKIANTFHAFNEGTLENE 454

Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           K F  +        +   +L P R   I +         +   R  S L   F
Sbjct: 455 KGFCAIATLEDVAKQDY-ILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLF 506


>gi|260582434|ref|ZP_05850226.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094585|gb|EEW78481.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 514

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 118/530 (22%), Positives = 203/530 (38%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       ++++        F   S+   + + + NT  NL + +            
Sbjct: 61  YAKLPDEIITPEIKTDAIKTKGYFIYPSQLFKNVVATANTNPNLNTELKQIFSDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G  
Sbjct: 181 EFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 337 AFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFYGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    ++ + +           V   +      +   +  L A+I 
Sbjct: 443 ADKEDVPHLAKSVSFEEIAKNDYNLAVSSYVEQKDTREVINIDELNAEIR 492


>gi|294624818|ref|ZP_06703478.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600882|gb|EFF44959.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 536

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 198/475 (41%), Gaps = 64/475 (13%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S + L  A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+  +   
Sbjct: 24  KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAEDPQ 83

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
                 +      +A   F+   +   S L +   +       ++    I   +++ K +
Sbjct: 84  AAEDKDEY-----LAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 138

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+        V+  +YE+ + +F     + 
Sbjct: 139 LPKDYARPALNKV----MLGELIDLISGIALNDKGAKSKDVLGRVYEYFLGQFAGAEGKR 194

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VVH    ++           P     +YDP CG+GG    +   V + G  
Sbjct: 195 GGEFYTPRSVVHTLVEMI----------EPYKG-RIYDPCCGSGGMFVQSEKFVNEHGGR 243

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +C   + +R ++SD R +         +  KD     +  
Sbjct: 244 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNNEG------SFHKDELRDLKAD 294

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +   +         R+  G P + + +  +L H+ + L    +  
Sbjct: 295 FILANPPFNISDWGGERLRDDV-------RWAFGPPPLGNANYAWLQHIVHHL----SPH 343

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + +  SGE +IR+ ++E   ++ +VALP  LF+ T I   LWIL+  
Sbjct: 344 GVAGVVLANGSMSSQQ--SGEGDIRKAMIEAGAVDCMVALPGQLFYSTQIPACLWILAKD 401

Query: 414 ---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                    K  +RRG++  I+A ++   +    + RR ++D +  +I   Y + 
Sbjct: 402 RSNGLVLKSKLRDRRGEILFIDARNMGALV---DRTRRELSDAEVARIAATYHAW 453


>gi|46019874|emb|CAE52400.1| putative restriction-modification enzyme type I M subunit
           [Streptococcus thermophilus]
          Length = 537

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 216/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A SL   +W +A+ L G    +++   +L     + L                   P RS
Sbjct: 8   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDKQLREVYEQENGKTDTFPERS 67

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
            +   ++ +   + D  +E+     GY       +    + + N   NL    A F+   
Sbjct: 68  TLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNELE 127

Query: 109 ---DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              +    +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 128 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 185

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 186 IGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRVPFH------IYDPAMGSGSLMLN 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++      H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 240 IRRYLIHPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 287

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 288 DADWPSEEPYQFDSVVMNPPYSVKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 342

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 343 HGFYHLK----ESGTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIFFG 395

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 396 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 448

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +E +    K++      +   L
Sbjct: 449 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTILLKINEELVQQEQVLL 508

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        ES
Sbjct: 509 SLIDDFSESEENQALIES 526


>gi|253991441|ref|YP_003042797.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782891|emb|CAQ86056.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica]
          Length = 721

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 122/554 (22%), Positives = 212/554 (38%), Gaps = 68/554 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT F    A L   IW  A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSF-QQRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIH 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     +T + L + + S          
Sbjct: 60  YAALDDSIITDDIKDDAIKTKGYFIYPSQLFCNVAAKASTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L + +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKGVEGLKLGNFNDHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +              GQE+   T  +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKHFDNHIIEEG------FFGQEINHTTFNLARMNMFLHNINYDK-----FDIRLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+     VQ I+A+ L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---SVQFIDASGLFKKETN----NNILTDAHIAQIMQVF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+ +    ++ + +           V   +      +   +  L A++  T  K+  L 
Sbjct: 442 SSKSDVDHLAKSVAFEQVAGNDYNLSVSSYVEAKDTREIVDITELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILKPMMQQ 525
           +     + +    +
Sbjct: 502 KDIDAIVAEIGGSE 515


>gi|323491151|ref|ZP_08096339.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Vibrio brasiliensis LMG
           20546]
 gi|323314616|gb|EGA67692.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Vibrio brasiliensis LMG
           20546]
          Length = 538

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 187/467 (40%), Gaps = 52/467 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  + +       + +D++
Sbjct: 17  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQKMIDDG---QEAFVDMK 73

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY       S +     ++N+        + I   + + K    D  FS  
Sbjct: 74  EFYQQ-DNIFYLEESSRWSFVQKHAKQDNIAVVIDTALASIEKANPSLKGALPDNYFSRQ 132

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++K   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 133 DLEVKKLASLIDTIENIDTLADECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSV 192

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L                 +YDP CG+GG    ++  V     H      +  +
Sbjct: 193 VTLLTEMLEPFQG-----------KIYDPACGSGGMFVQSLKFVKQ---HEGRTKDIAIY 238

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+ +    + IR L        +   +   T   D     +  Y ++NPPF  
Sbjct: 239 GQELTSTTYKLAKMNLAIRGLSG------NLGERPADTFFADQHKDLKADYIMANPPFNI 292

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
              +D++ + K+ +       G   P   + +  +++H+ +KL    +  G A  VL++ 
Sbjct: 293 SQWRDENELTKDPRFS-----GYRTPPTGNANYGWILHMLSKL----SETGTAGFVLANG 343

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------E 416
            +      SGE EIR+ L+END++E ++ALP  LF+ T I   +W ++  K         
Sbjct: 344 SM--SSNTSGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNKQANSSKGYR 401

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            R  +   I+A ++ T      +  + +  D    I D Y +  +  
Sbjct: 402 PREKETLFIDAREMGTM---TSRVHKELTVDDIALIADTYHAWRSDD 445


>gi|57865903|ref|YP_190015.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis RP62A]
 gi|57636561|gb|AAW53349.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis RP62A]
          Length = 518

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 204/544 (37%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   + + ++       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 66  NIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR----NNLESYIASFSDNAKAI 114
             + E++ +                 +     +    T+     +L   I    ++ +  
Sbjct: 69  AWEDEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128

Query: 115 ---------FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                    F D D +ST        +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNKPNL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VGREA----------DVRFYYGQEYNNTTFNLARMNMLLHDVNY-----TRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G++F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGYGK-----LAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNHLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +   +N    + ++ D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEKGKN----QNLLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             KFS ++           +  P  +    ++  +   +       +     +   +I  
Sbjct: 448 IDKFSYVVSLDEIIENDYNLNIPRYVDTFEEEEPIDLDQVQQQLSDIDKEIANVESEIND 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|294793176|ref|ZP_06758322.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
 gi|294456121|gb|EFG24485.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
          Length = 503

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 113/529 (21%), Positives = 203/529 (38%), Gaps = 61/529 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MAAKNNTDIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELIKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +         F+   E   +T+ S           +N    I   +   K 
Sbjct: 59  ---GDGFENDRDAYAEENIFFVPEEARWTTIASAAHTPEIGLVIDNAMRAIEKENTTLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F S    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++      +    Q  T   DL    + 
Sbjct: 222 NRGT---ISVYGQESNADTWKMAKMNMAIRGIDA------NFGPYQADTFFNDLHKTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +       K  +  R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGQE-------KLKDDVRWKYGLPPAGNANYAWIQHMIHHL----GS 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE +IR+ ++E DL+E IVALPT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGAL--SSQTSGEGDIRKNIIEADLVEGIVALPTQLFYSVTIPVTLWFISM 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A ++   +    +K R   DD  +++ D + S ++G       F  
Sbjct: 380 NK--KQKGKTLFIDARNMGYMV---NRKHRDFTDDDIQRLADTFSSFQDGTLEDVKGFCA 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           ++D +    +   +L P R   I           +   R  S L + F 
Sbjct: 435 VVDTKKIEEQDY-ILTPGRYVGIEAVEEDNEPFEEKMSRLTSELSEMFI 482


>gi|27380125|ref|NP_771654.1| type I restriction-modification system specificity subunit
           [Bradyrhizobium japonicum USDA 110]
 gi|27353279|dbj|BAC50279.1| type I restriction-modification system specificity subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 879

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 111/518 (21%), Positives = 214/518 (41%), Gaps = 57/518 (11%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK- 74
           +K  ++L G+   +++ + I     L+R     +  R  +     A G     LE+ ++ 
Sbjct: 14  FKACDELRGNMDASEYKEYIFGVLFLKRCSDLFDQQREKLTVNLRARGLDGQRLEALLES 73

Query: 75  VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFDFSSTIA-RL 127
              Y+FY   +   +T+     +  N L + +        D  + + E  +F+  I  R 
Sbjct: 74  RDQYTFYVPPQARWATVRHLKEDVGNGLNAALGELERHNKDQLEDVLEHINFNRKIGQRT 133

Query: 128 EKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                L    + F  I L  +      ++   YE+LI+ F     + A +F TP DVV  
Sbjct: 134 LSDDTLVDFLQVFENIPLRDENFEFPDLLGAAYEYLIKYFADSAGKKAGEFYTPADVVRT 193

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P    ++YDPT G+GG L  + ++V D G     P  L   GQE
Sbjct: 194 MVEIV----------DPQPGMSIYDPTVGSGGMLIQSRDYVRDNGGD---PNNLSLAGQE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPF 301
            +  T ++C   M++  ++S        +I+Q +TL+K    G      RF   L+NPPF
Sbjct: 241 SQGTTWSICRMNMILHDIQS-------ADIRQENTLTKPQHRGDDGELIRFDRVLANPPF 293

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            + +       +     G   ++ P   K     ++F+ H+   L+     GGR A V+ 
Sbjct: 294 SQSYSA-----KDMEFKGRFVKWMP--EKGKKADLMFVQHMLAVLK----SGGRMATVMP 342

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF    G  E + R   ++   ++A++ LP  LF+ T I   + ++S  + + R+  
Sbjct: 343 HGVLFR---GGEEKDAREHFIKQGWLDAVIGLPPSLFYGTGIPACILVMSKERADLRKD- 398

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RI 478
           V  INA   +     EGK +  +  +   +I+D+Y  R++   ++R++            
Sbjct: 399 VLFINADREY----REGKAQNFLRPEDMSKIVDVYRRRQDVPGYARVVPIAEIEAEEFNC 454

Query: 479 KVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFW 515
            + R +  +   +   + A +   +   ++  + + + 
Sbjct: 455 NIRRYVDNAPPPEPQDVRAHIHGGVPVAEVDAMERLWL 492


>gi|323182016|gb|EFZ67427.1| type I restriction-modification system, M subunit [Escherichia coli
           1357]
          Length = 518

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 124/549 (22%), Positives = 212/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVATKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---KVQFIDASELFKKETN----NNILTDAHIEKIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L  ++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVAFEAVVANDYNLSVSSYVEAKDTREIIDIAELNTELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|323699619|ref|ZP_08111531.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. ND132]
 gi|323459551|gb|EGB15416.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 502

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 108/512 (21%), Positives = 205/512 (40%), Gaps = 49/512 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   + + ++K  +   G    + +   IL    ++ L          + +++ 
Sbjct: 1   MTTTKVNQKEINDILFKACDTFRGILNASQYKDYILAMLFVKYLSDVYRERYDELSQQFK 60

Query: 61  AFGGS---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +  E FV   G +FY+  +   +T          E    +     + +F +
Sbjct: 61  GDKERIGRRLARERFVMPEGCTFYDLYDQRNATNVGEVINTTFEKIEDANRAKLQGVFRN 120

Query: 118 FDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            D++S        ++   L K  ++ +   ++L P  V +  V+ N YE+LI  F +   
Sbjct: 121 IDYNSEANLGKTKDRNRRLKKFLEDLNDPRLDLRPSRVGNLDVIGNAYEYLIANFAAGAG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L   L+          +P     + DP CG+G  L    N V    
Sbjct: 181 KKAGEFYTPPEVSELIAELV----------APQPGERICDPACGSGSLLIKCGNRVR--- 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +GQE+  ET A+    M +  ++   R +    +++   +  D  T  +
Sbjct: 228 ---WTSEDFSLYGQEINGETWALAKMNMFLHGMDR-ARVEWGDTLREPKLIEDD--TTMK 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF       K A    H      RF  GLP  S     F+ H+    E    
Sbjct: 282 FEVVVANPPFSLDKWGYKSAQSDPH-----NRFHRGLPPKSKADYAFISHMI---ETTTL 333

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR  +V+    LF G A   E +IR+ L+E +L++A++ LP +LFF T I   + +  
Sbjct: 334 ESGRVGVVVPHGVLFRGGA---EGKIRQQLIEENLLDAVIGLPANLFFGTGIPAAILVFK 390

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRM--L 468
             + ++    V  I+A+  +   +N    +  +  +  R+I+D Y +RE   K++ +   
Sbjct: 391 RNRPDK---DVLFIDASREYADAKN----QNKLRPENVRKIVDTYKAREFVDKYAYVAGF 443

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           D        + + R +      ++  +A+++ 
Sbjct: 444 DELKENDFNLNIPRYVDTFEEEEEVDIAKVQG 475


>gi|238918945|ref|YP_002932459.1| hypothetical protein NT01EI_1012 [Edwardsiella ictaluri 93-146]
 gi|238868513|gb|ACR68224.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 539

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 182/463 (39%), Gaps = 52/463 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +         + +D++
Sbjct: 18  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFITDKFEAKRKQLMANG---QEAFVDMD 74

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     F+       S + +   ++++        + I   +        D  FS  
Sbjct: 75  VFYQQ-DNVFFLPEAARWSYVKARAKQDDIAVIIDSALATIEKSNSALTGALPDNYFSRQ 133

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++K   L    +N   +        + ++  +YE+ + RF +   +G  +F TP+ V
Sbjct: 134 GLEVKKLASLIDTIENIDTLASECQLSEEDLVGRVYEYFLGRFAASEGKGGGEFYTPKSV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   +L   +             +YDP CG+GG    ++  V    SH      +  +
Sbjct: 194 VTLLAEMLEPYEG-----------KIYDPCCGSGGMFVQSLKFVE---SHQGKSKDIAIY 239

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+ +    + IR L        +   +   T   D     +  + ++NPPF  
Sbjct: 240 GQELTTTTYKLAKMNLAIRGLIG------NLGERPADTFFADQHPDLKADFIMANPPFNL 293

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K  + +  +  + +       G   P   + +  +++H+  KL +     G A  VL++ 
Sbjct: 294 KEWRSESELTNDPRFA-----GFRTPPTGNANYAWILHMLAKLSV----DGTAGFVLANG 344

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------E 416
            +      SGE EIR+ L+E+D IE ++ALP  LF+ T I   LW +S  K         
Sbjct: 345 AM--SSNTSGEGEIRQKLIEDDRIECMIALPGQLFYTTQIPVCLWFISKSKQANPRYGYR 402

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            R G+   I+A +L T +    +  + +      +I D + + 
Sbjct: 403 ARSGETLFIDARELGTMV---SRTNKELTAADIARIADTFHAW 442


>gi|187477055|ref|YP_785079.1| type i restriction enzyme EcoR124II M protein [Bordetella avium
           197N]
 gi|115421641|emb|CAJ48151.1| type i restriction enzyme EcoR124II M protein [Bordetella avium
           197N]
          Length = 519

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 126/559 (22%), Positives = 217/559 (38%), Gaps = 71/559 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A+L   IW  A D+ G     DF + +L     R +        +       
Sbjct: 1   MT-SNEQRAALQRKIWDIANDVRGAVDGWDFKQYVLGALFYRFISENFIDYITGGDASMD 59

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
                + D       +  +K  GY  Y  S+  ++   + NT  NL + +A+        
Sbjct: 60  YAAMPDNDENIAAAKDDAIKTKGYFIY-PSQLFVNVAANANTNENLNTDLANIFAAIEAS 118

Query: 108 ------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                   + K +F DFD +S        +K   L K+ K  + ++    D     +  +
Sbjct: 119 ANGYPSERDIKGLFADFDTTSNRLGNTVKDKNDRLSKVLKRVAELDFGGFDASHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQE+   T+ +    M +  +  D       NIQ
Sbjct: 231 SLLLQAKKHFDQHLIEDG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNIQ 279

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S  
Sbjct: 280 LGNTLIEPHFGEDKPFDAIVSNPPYSVKWIGGDDPTLINDE-----RFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALNYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +L+  K +      Q I+A+ L+    N      ++ D    QI+ 
Sbjct: 388 PNLFYGTTIAVNILVLAKNKKDTT---TQFIDASGLFKKETN----NNVLLDSHIEQIMA 440

Query: 455 IYVSREN-GKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
           ++ S++N   F++ +           + V   +      +   +A+L A++  T  K+  
Sbjct: 441 VFDSKDNVDHFAKSVPLEEVVNKEYNLSVSSYVEAKDNREVVDIAKLNAELKTTVTKIDQ 500

Query: 510 LHQSFWLDILKPMMQQIYP 528
           L +     + +    +   
Sbjct: 501 LRKDIDAIVAEIEGGEFEA 519


>gi|227523728|ref|ZP_03953777.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227089043|gb|EEI24355.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus hilgardii ATCC 8290]
          Length = 532

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 218/554 (39%), Gaps = 69/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-------KYLAFGGSNI 67
           +W  A DL G+   ++F   IL     R L   ++   + + +       +         
Sbjct: 19  LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78

Query: 68  DLESFVKVAGYSFYNTS-------------EYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           DL + +K +   F                  + +  L  +       +      D+ K +
Sbjct: 79  DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FED D +S+       E++ L+ K+  N + I+ H + +   V+ + YE+LI +F +   
Sbjct: 139 FEDMDLASSRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAATAG 198

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  + + L+    + +        RT+YDPT G+G  L    ++     
Sbjct: 199 KKAGEFYTPQQVSKVLSQLVTLNREEV--------RTVYDPTMGSGSLLLRVGDYAK--- 247

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +   +GQEL   T+ +    ML+  +          +++QG TL  D F  + 
Sbjct: 248 -------VAEYYGQELNGTTYNLARMNMLMHGINYS-----RFDLRQGDTLENDQFPERT 295

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+   W         +  + E  R        S     F+ H+   L+    
Sbjct: 296 FDAVVANPPYSANWNAT------DKLDDERFRKYGKTAPKSKADFAFVEHMLYHLKT--- 346

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWIL 410
             GR A+VL    LF G A   E +IR++++E D  ++A++ +P +LF+ T+I T + + 
Sbjct: 347 -DGRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVLVF 402

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              +       +  I+A+  +   +N    +  + D+  ++I+D Y  R++  KF+ + D
Sbjct: 403 DKSRINH---DILFIDASKDFEKGKN----QNNLTDENVKKIIDTYKDRKDVKKFAHVAD 455

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
           ++        +  P R     +      ++  +   K +    S        M+  +   
Sbjct: 456 FKEIKENEFNLNIP-RYVDTFEPEPPVDVDKLVADIKDTDEQISKLESEFSSMLDDLEGK 514

Query: 530 GWAESFVKESIKSN 543
                     IK  
Sbjct: 515 NPVAQQQLTKIKEL 528


>gi|227530269|ref|ZP_03960318.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
 gi|227349823|gb|EEJ40114.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 113/531 (21%), Positives = 207/531 (38%), Gaps = 59/531 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   +   + + + +WK A+ L G    +++  V+L    L+ +  + E   + + +   
Sbjct: 3   MATKSKELS-IEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLKSDY 61

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                + D+   E+   V   + +   + S  T       ++    I   +D+ + +   
Sbjct: 62  PEDAEDPDMYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLRGVLSK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAED 176
              S  + +      L ++    S I L         ++  +YE+ +  F S+  +   +
Sbjct: 122 NYASPDLDK----TRLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEGKKGGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR +V     ++                 +YDP CG+GG    +   V +   H   
Sbjct: 178 FYTPRSIVRTLVEMIEPYKG-----------RIYDPCCGSGGMFVQSDKFVQE---HQGK 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L  +G+E  P T  +    + IR +      D +    QG T + DL  G+RF + L
Sbjct: 224 IGDLSVYGEESNPTTWKLAKMNLAIRGI------DNNLGPHQGDTFTNDLHKGERFDFIL 277

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K            K  E  R+  G+P + + +  ++ H+ +KL       G+A
Sbjct: 278 ANPPFNVKNWNG-------DKLREDARWKYGVPPVGNANYAWIEHIISKL----APDGKA 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-- 414
             VL++  L    +   E  IR+ LLE+D I+AIVA+P+ +F+ T I   LW +   K  
Sbjct: 327 GFVLANGALST--STKEEYTIRKALLEDDKIDAIVAMPSQMFYSTGIPVSLWFIDMNKES 384

Query: 415 --TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---------RENGK 463
                R+G+   I+A DL   I    +  R  + D  +++ D Y +         ++   
Sbjct: 385 PDERNRKGETLFIDARDLGEMI---DRTHRAFSKDDIKKVADTYHAYRGTNKQEYKDVAG 441

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           F ++            VL P R   +  +            R    L + F
Sbjct: 442 FCKIAKLDEIAKNDY-VLTPGRYVGLAKQADDGEPYEVKMKRLTGELKKQF 491


>gi|167829997|ref|ZP_02461468.1| N-6 DNA methylase [Burkholderia pseudomallei 9]
          Length = 528

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 101/481 (20%), Positives = 194/481 (40%), Gaps = 62/481 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYLA 61
              L   +W  A+ L       ++  ++L    L+ +  A +  R+ +      +E  L 
Sbjct: 2   NQDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRAQLAAAFGNQEDDLY 61

Query: 62  FGGSNIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTRNN----LESYIASFSDNAKA 113
              +    E+  +   Y+    F+  +     ++ +   + +    ++S + +   + K+
Sbjct: 62  LPDAADHAEALEERDYYTMANVFWVPASARWESIRAQAKQPDIGVRIDSALEAIEADNKS 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    D      +LE   L  ++    S +          ++  +YE+ + +F +   + 
Sbjct: 122 LKGILDKRFGRTQLEPGRLG-ELVDLISTVGFGEGHHAKDLLGEVYEYFLGQFATAEGKK 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  VV +   +L   +             +YDP CG+GG    +   +    SH
Sbjct: 181 GGQFYTPASVVRVLVEVLAPHEG-----------RVYDPCCGSGGMFVQSEKFIE---SH 226

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P T  +    + IR L +D         +   T  +D     R  
Sbjct: 227 GGKADDISIYGQEANPTTWRLVAMNLAIRGLAAD------LGKEPADTFHRDQHPDLRAD 280

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF       +   +         R+  G+P   + +  +L H+ + L    +  
Sbjct: 281 YVLANPPFNISDWGGERLADDR-------RWAYGVPPAGNANYAWLQHILHHL----SPR 329

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A +VL++  + + +  SGE EIRR ++E D+++ +VALP  LFF T I   LW L+  
Sbjct: 330 GQAGVVLANGSMSSSQ--SGEGEIRRAMVEADVVDVMVALPPQLFFNTQIPACLWFLAKD 387

Query: 414 K----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENG 462
           K          + +RRG+V  I+A  L    R   +  R+ +D+   +I    +  R +G
Sbjct: 388 KSGTPVPGGKPSRDRRGEVLFIDARKLG---RMASRVVRVFDDEDIARIASTVHRWRADG 444

Query: 463 K 463
           +
Sbjct: 445 E 445


>gi|68248821|ref|YP_247933.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|148825522|ref|YP_001290275.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE]
 gi|229847391|ref|ZP_04467492.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae
           7P49H1]
 gi|68057020|gb|AAX87273.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|148715682|gb|ABQ97892.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE]
 gi|229809717|gb|EEP45442.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae
           7P49H1]
          Length = 514

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 202/530 (38%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +     NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    +      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDNPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 337 AFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFYGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
            ++E+    ++ + +         + V   +      +   +  L A I 
Sbjct: 443 ANKEDVPHLAKSVSFEEIAQNDHNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|88854447|ref|ZP_01129114.1| type I restriction-modification system DNA methylase [marine
           actinobacterium PHSC20C1]
 gi|88816255|gb|EAR26110.1| type I restriction-modification system DNA methylase [marine
           actinobacterium PHSC20C1]
          Length = 522

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 117/533 (21%), Positives = 205/533 (38%), Gaps = 69/533 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSA 54
           T      A L   IW+ A DL G     DF   +L     R +   L       E    +
Sbjct: 4   TTKESQRAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYVNTGERKAGS 63

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF------ 107
               Y +   S+ +      V+   FY   SE  ++         NL   + +       
Sbjct: 64  ADFDYRSLSDSDAEFGRQETVSEKGFYILPSELFVNVQHKAQQDENLNETLHTVFRNIEG 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-EL---HPDTVPDRVMS 156
                   D+ K +F D D +S       A    K+ K    I +L   + D     +  
Sbjct: 124 SAVGTDSEDDLKGLFHDLDVNSPKLGQTVAKRNEKLVKLLDAIGDLPLGNFDDNTIDLFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L++ + S   +   ++ TP++V  L   + +     + K        +YDP  G+
Sbjct: 184 DAYEYLMQMYASSAGKSGGEYYTPQEVSELLARITVVGKTEVNK--------VYDPAVGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +               +GQE+   T+ +    M +  +  +       N+
Sbjct: 236 GSLLLKFAKVLGKENVRQG------FYGQEINLTTYNLARINMFLHDVNYEK-----FNL 284

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+       + F   +SNPP+  KW+ D + +          RF P   L   S 
Sbjct: 285 AHGDTLTDPAHWGDEPFEAIVSNPPYSIKWDGDANPLLIND-----PRFAPAGVLAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L +     G AAIV     L+ G A   E++IR++L++N+ ++A++ L
Sbjct: 340 ADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVDAVIQL 392

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF T IAT + +L   K +     V  I+A+  +    N G  +  + +  + +IL
Sbjct: 393 PPDLFFGTTIATCIIVLKKSKVD---NSVLFIDASAEF----NRGGSKNKLAEANQAKIL 445

Query: 454 DIYVSRENG-KFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           D + +R +   F++++             V   +      +   +  L A+I 
Sbjct: 446 DTFTTRVDTAHFAKLVPNANLAENSYNMAVSSYVEQEDTREVVDITELNAEIA 498


>gi|22416339|emb|CAC87150.1| restriction-modification enzyme type I M subunit [Streptococcus
           thermophilus]
          Length = 531

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 216/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A SL   +W +A+ L G    +++   +L     + L                   P RS
Sbjct: 2   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDKQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
            +   ++ +   + D  +E+     GY       +    + + N   NL    A F+   
Sbjct: 62  TLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 109 ---DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              +    +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRVPFH------IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++      H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLIHPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +E +    K++      +   L
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTNLLKINEELVQQEQTLL 502

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        ES
Sbjct: 503 SLIDDFSESKENQALIES 520


>gi|110799934|ref|YP_696989.1| type I restriction-modification system, M subunit [Clostridium
           perfringens ATCC 13124]
 gi|110674581|gb|ABG83568.1| type I restriction-modification system, M subunit [Clostridium
           perfringens ATCC 13124]
          Length = 505

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 120/515 (23%), Positives = 226/515 (43%), Gaps = 57/515 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T     L + +W+ A+ L G+    ++   I     L+RL    +  R   R+++L
Sbjct: 1   MAKLT--LQELESTLWQCADILRGELSAAEYKDYIFGMLFLKRLNDEFDEEREERRKEFL 58

Query: 61  AFGGSNIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAK---- 112
             G    ++   ++      +F+   +     L +   N    L+    +  D  K    
Sbjct: 59  EDGLDKEEVIELLEDPSIYETFFVPEQARWEKLRNLTLNIGPELDKAFKALEDEPKNSEL 118

Query: 113 -AIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEV 170
             +    +++      +K   L ++   FS + L + +   + ++ + Y++LI++F  + 
Sbjct: 119 VGVLSTTNYNDKEKVPDK--KLAQLLVLFSTVNLANSNLASEDMLGDAYQYLIKQFADQG 176

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP +VV + T +L           P     +YDPTCG+GG L  ++ +V   
Sbjct: 177 GKKGGEFYTPTEVVKVITNIL----------KPQEGDRIYDPTCGSGGMLIQSIEYVKKH 226

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L   GQE+   T A+C   ML    +         +IQ+G T+ +   T  
Sbjct: 227 GGN---PKNLSLFGQEINLSTWAICKMNMLFHGAKG-------ADIQKGDTIREPKHTEG 276

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K F   L+NPPF  K    +     E       RF  G+P  S G + F+ H+   L
Sbjct: 277 GALKVFDKVLANPPFSLKNWGAE-----EASYDAFHRFTYGIPPKSYGDLAFVEHMLGSL 331

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G+ A V+    LF G A   E +IR+  +E+DLIEA++ LP +LF+ T I   
Sbjct: 332 ----NMKGKMASVVPHGVLFRGSA---EGKIRKGFIEDDLIEAVIGLPQNLFYGTGIPAA 384

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +L+  K+EER+ K+  I+ ++ +    N+ K    + ++   +I+  +   E+  K++
Sbjct: 385 ILVLNKAKSEERKNKILFIDGSNDFVKQGNKNK----LREEDIEKIITAFDKFEDVEKYA 440

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL 498
            ++D  T       + + R +  +   +   + ++
Sbjct: 441 NVIDLETIKENDYNLNISRYVDTTEEEEPVDIQKV 475


>gi|148982142|ref|ZP_01816609.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
 gi|145960647|gb|EDK25994.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
          Length = 510

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 106/503 (21%), Positives = 195/503 (38%), Gaps = 52/503 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGG 64
              +   +W   +   G    + +   IL    L+ +    +     + +++        
Sbjct: 13  QEQVNKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKFDELSKQFNGNEQMIT 72

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           + +  +SF    G +F++  E        +     L +   +     K +F+D  F++  
Sbjct: 73  AMMSKQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQDISFNTDK 132

Query: 125 ARLEK--AGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F T
Sbjct: 133 LGDEKQKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYT 192

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +V  L + +L           P    ++ DP CG+G  L      V +  S  K    
Sbjct: 193 PPEVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQNNFSGSK---Q 239

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHY 294
               GQE    T ++    M +   +       +  I+ G T+       K      F  
Sbjct: 240 YALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDKEGGLLHFDV 292

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             +NPPF       +DA      N   GRF  G+P  + G   F+ H+   L+      G
Sbjct: 293 VTANPPFSLDKWGFEDA-----GNDHFGRFRRGIPPKTKGDYAFISHMIETLK---PESG 344

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R  +V+    LF   +   E +IR+ L++ +L++ ++ LP  LFF T I   + I   +K
Sbjct: 345 RMGVVVPHGVLFRASS---EGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILIFKKQK 401

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473
            +    KV  I+A+  + S +N    +  +  +  R+I+D Y +RE   K+S +      
Sbjct: 402 DD---NKVLFIDASREFKSGKN----QNQLTPENIRKIVDTYKARETTDKYSYLASLEEV 454

Query: 474 GYRRIKVLRPLRMSFILDKTGLA 496
                 +  P  +    ++  + 
Sbjct: 455 AENDYNLNIPRYVDTFEEEEEID 477


>gi|10956197|ref|NP_051026.1| type IC modification subunit [Streptococcus thermophilus]
 gi|6137148|gb|AAF04357.1| type IC modification subunit [Streptococcus thermophilus]
          Length = 531

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 216/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A SL   +W +A+ L G    +++   +L     + L                   P RS
Sbjct: 2   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDKQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
            +   ++ +   + D  +E+     GY       +    + + N   NL    A F+   
Sbjct: 62  TLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 109 ---DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              +    +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFSDIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRVPFH------IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++      H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLIHPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +E +    K++      +   L
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTNLLKINEELVQQEQTLL 502

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        ES
Sbjct: 503 SLINDFSESEENQAMIES 520


>gi|323965459|gb|EGB60914.1| N-6 DNA methylase [Escherichia coli M863]
 gi|327250266|gb|EGE61985.1| N-6 DNA Methylase family protein [Escherichia coli STEC_7v]
          Length = 539

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 189/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +  +T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPANTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +R+G+   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRDRQGETLFIDARNLGTMI---SRTTKELTAEDIATIADTYHAW 442


>gi|260905625|ref|ZP_05913947.1| N-6 DNA methylase [Brevibacterium linens BL2]
          Length = 532

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 105/473 (22%), Positives = 185/473 (39%), Gaps = 57/473 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L   +WK A+ L G      +  VIL    L+ +  A E  +S +R +Y   G  
Sbjct: 12  TTMNELKATLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAFEEEQSLLRVEYEEQGID 71

Query: 66  NIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLES------YIASFSDNAKAIF 115
             D+   +       G   +   E +  T  + N +    S       + +  D A    
Sbjct: 72  EEDIAELLLDTDTYVGEGIFLVPEAARWTFLAENAKGQAPSGAEAGRTVGALIDEAMDQL 131

Query: 116 EDFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRF 166
              +     T+ RL          L ++   FS        +     +M  +YE+ +  F
Sbjct: 132 MRANPSLRGTLPRLYNKDNIDQRRLGELVDLFSSTRFSRQGEHKARDLMGEVYEYFLGEF 191

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                +   +F TPR VV     +L           P     +YDP CG+GG    +   
Sbjct: 192 ARAEGKRGGEFFTPRPVVRTMVEIL----------EPYSG-RVYDPCCGSGGMFVQSEKF 240

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D       P  +  +GQE   ET  +    + I  +E           + G T ++D+
Sbjct: 241 IEDNNGD---PREIAVYGQESIEETWRMAKMNLAINGIE-----VQGLGEKWGDTFARDI 292

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +  Y L+NPPF  K            ++ E  R+  G+P   + +  ++ H+ +KL
Sbjct: 293 HADTQMDYVLANPPFNLKAWA---------RSEEDPRWTFGVPPEKNANYAWIQHILSKL 343

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G+A +V+++  +       GE +IR  ++E DL+  ++ALPT LF  T I   
Sbjct: 344 ----NDSGKAGVVMANGSM--SSNTGGEGDIRAQIVEADLVSCMLALPTQLFRSTGIPVC 397

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +W  + +K   R G+V  I+A D+   I    +  R ++++   +I   + + 
Sbjct: 398 VWFFAKKKGA-RAGEVLFIDARDMGHMI---SRAERSLSNEDIEKIAGTFHAW 446


>gi|167847545|ref|ZP_02473053.1| N-6 DNA methylase [Burkholderia pseudomallei B7210]
 gi|226198245|ref|ZP_03793816.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929765|gb|EEH25781.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 548

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 101/481 (20%), Positives = 194/481 (40%), Gaps = 62/481 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYLA 61
              L   +W  A+ L       ++  ++L    L+ +  A +  R+ +      +E  L 
Sbjct: 22  NQDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRAQLAAAFGNQEDDLY 81

Query: 62  FGGSNIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTRNN----LESYIASFSDNAKA 113
              +    E+  +   Y+    F+  +     ++ +   + +    ++S + +   + K+
Sbjct: 82  LPDAADHAEALEERDYYTMANVFWVPASARWESIRAQAKQPDIGVRIDSALEAIEADNKS 141

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    D      +LE   L  ++    S +          ++  +YE+ + +F +   + 
Sbjct: 142 LKGILDKRFGRTQLEPGRLG-ELVDLISTVGFGEGHHAKDLLGEVYEYFLGQFATAEGKK 200

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  VV +   +L   +             +YDP CG+GG    +   +    SH
Sbjct: 201 GGQFYTPASVVRVLVEVLAPHEG-----------RVYDPCCGSGGMFVQSEKFIE---SH 246

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P T  +    + IR L +D         +   T  +D     R  
Sbjct: 247 GGKADDISIYGQEANPTTWRLVAMNLAIRGLAAD------LGKEPADTFHRDQHPDLRAD 300

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF       +   +         R+  G+P   + +  +L H+ + L    +  
Sbjct: 301 YVLANPPFNISDWGGERLADDR-------RWAYGVPPAGNANYAWLQHILHHL----SPR 349

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A +VL++  + + +  SGE EIRR ++E D+++ +VALP  LFF T I   LW L+  
Sbjct: 350 GQAGVVLANGSMSSSQ--SGEGEIRRAMVEADVVDVMVALPPQLFFNTQIPACLWFLAKD 407

Query: 414 K----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENG 462
           K          + +RRG+V  I+A  L    R   +  R+ +D+   +I    +  R +G
Sbjct: 408 KSGTPVPGGKPSRDRRGEVLFIDARKLG---RMASRVVRVFDDEDIARIASTVHRWRADG 464

Query: 463 K 463
           +
Sbjct: 465 E 465


>gi|227544655|ref|ZP_03974704.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri CF48-3A]
 gi|300909428|ref|ZP_07126889.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri SD2112]
 gi|227185380|gb|EEI65451.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri CF48-3A]
 gi|300893293|gb|EFK86652.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri SD2112]
          Length = 512

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 112/531 (21%), Positives = 209/531 (39%), Gaps = 59/531 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   +   + + + +WK A+ L G    +++  V+L    L+ +  + E   + + +   
Sbjct: 3   MATKSKELS-IEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLKSDY 61

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                + D+   E+   V   + +   + S  T       ++    I   +D+ + +   
Sbjct: 62  PEDAEDPDMYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLRGVLSK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAED 176
              S  + +      L ++    S I L         ++  +YE+ +  F S+  +   +
Sbjct: 122 NYASPDLDK----ARLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEGKKGGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR +V     ++                 +YDP CG+GG    +   V +   H   
Sbjct: 178 FYTPRSIVRTLVEMIEPYKG-----------RIYDPCCGSGGMFVQSDKFVQE---HQGK 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L  +G+E  P T  +    + IR +      D +    QG T + DL  G+RF + L
Sbjct: 224 IGDLSVYGEESNPTTWKLAKMNLAIRGI------DNNLGPHQGDTFTNDLHKGERFDFIL 277

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K            K  E  R+  G+P + + +  ++ H+ +KL       G+A
Sbjct: 278 ANPPFNVKNWNG-------DKLREDARWQYGVPPVGNANYAWIEHIISKL----APDGKA 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-- 414
             VL++  L    + + E +IR+ +LE+D I+AIVALP  +F+ T I   LW +   K  
Sbjct: 327 GFVLANGALST--STTAEHDIRKAILEDDKIDAIVALPDKMFYSTGIPVSLWFVDMNKES 384

Query: 415 --TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---------RENGK 463
               +R+G+   I+A DL   I    +  R  + +  +++ D Y +         ++   
Sbjct: 385 ENERDRKGETLFIDARDLGEMI---DRTHRAFSKEDIKKVADTYHAYRGTNDQEYKDVPG 441

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           F ++            VL P R   +  +            R    L + F
Sbjct: 442 FCKVAKLDEIAKNDY-VLTPGRYVGLAKQEDDGEPYEVKMARLTGELKKQF 491


>gi|193070116|ref|ZP_03051062.1| type I restriction-modification system, M subunit [Escherichia coli
           E110019]
 gi|218561525|ref|YP_002394438.1| type I restriction-modification system methyltransferase subunit;
           (hsdM-like) [Escherichia coli S88]
 gi|192956569|gb|EDV87026.1| type I restriction-modification system, M subunit [Escherichia coli
           E110019]
 gi|218368294|emb|CAR06112.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) [Escherichia coli S88]
          Length = 539

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 188/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +R+G+   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRDRQGETLFIDARNLGTMI---SRTTKELTAEDIATIADTYHAW 442


>gi|331681143|ref|ZP_08381780.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
 gi|331081364|gb|EGI52525.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
          Length = 539

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 106/486 (21%), Positives = 196/486 (40%), Gaps = 58/486 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T+   +       +W  A  L G  + +++  V+L    L+ +    E  R  +     A
Sbjct: 6   TKKAKAKKGFEETLWDAANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRKKMIADGQA 65

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
                +++E F +     FY   E   S +     ++++        S I   +   K  
Sbjct: 66  ---DFLEMEVFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNQTLKGA 121

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVS 171
             D  FS      +K   L     N   +    D      + ++  +YE+ + +F +   
Sbjct: 122 LPDNYFSRQNLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G  +F TP+ VV L T +L                 +YDP CG+ G    ++  V    
Sbjct: 182 KGGGEFYTPKCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE--- 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           SH      +  +GQEL   T+ +    + IR L +      +   +  +T   D     +
Sbjct: 228 SHQGKSRDIALYGQELTATTYKLAKMNLAIRGLSA------NLGERPANTFFSDQHPDLK 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +
Sbjct: 282 ADYILANPPFNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----S 332

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++
Sbjct: 333 ANGTAGFVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMT 390

Query: 412 NRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---EN 461
             K         +R+G+   I+A +L T I    +  + +  +    I + Y +    + 
Sbjct: 391 KSKAADPAKGYRDRQGETLFIDARNLGTMI---SRTTKELTTEDIATIANTYHAWRSTQE 447

Query: 462 GKFSRM 467
              +R+
Sbjct: 448 ELAARI 453


>gi|319400012|gb|EFV88254.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis FRI909]
          Length = 518

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 207/544 (38%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGG 64
              A L   +W  A DL G+   ++F   IL     R L    E   + +  E  +++  
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 65  SNIDLE-------SFVKVAGYSFYNTSEYSLSTLG---STNTRNNLESYIASFSDNAKAI 114
           +  D E         + + G+       +S         T    +L   I    ++ +  
Sbjct: 69  AWKDEEYREALQQELINLIGFVIEPQDLFSHLIQKIESQTFEIEDLHKAINKIEESTRGE 128

Query: 115 ---------FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                    F D D +ST        +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNKPNL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VGREA----------DVRFYYGQEYNNTTFNLARMNMLLHDVNY-----TRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G +F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGGKFDAVVANPPYSAKWSADPSFLDDERFSGYGK-----LAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LF+ T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +   +N    + ++ D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEKGKN----QNLLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             KFS +            +  P  +    ++  +   +       +     +  L+I +
Sbjct: 448 IDKFSYVATLDEIKDNDYNLNIPRYVDTFEEEEPIDLDQVQQQLSDIDKEIANVELEINE 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|311278008|ref|YP_003940239.1| type I restriction-modification system, M subunit [Enterobacter
           cloacae SCF1]
 gi|308747203|gb|ADO46955.1| type I restriction-modification system, M subunit [Enterobacter
           cloacae SCF1]
          Length = 535

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 103/538 (19%), Positives = 201/538 (37%), Gaps = 77/538 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGG 64
            + + L   +W  A+ L G     +F    L F   + L        + +  E  + +  
Sbjct: 8   QNLSELQGRLWNIADTLRGKMNADEFRDYCLGFIFYKYLSEKFVAYANKILAEDGIQYNE 67

Query: 65  SNIDLESF-----------VKVAGYSFYNTSEYSLSTL---------GSTNTRNNLESYI 104
              +  ++           ++  GY    T  +              G+     +L + +
Sbjct: 68  LTAEHPAYQDIVDAVKEDSIQTLGYFLPPTDLFHTMAERVAKDPKGTGTGFILEDLATTL 127

Query: 105 ASFS---------DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD 152
            +           D+   +FED D  S+        K  L+ K+      +  +      
Sbjct: 128 RNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVVTELDKLSFNLSEASS 187

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ + YE+LI +F S   + A +F TP+ V  L   ++      L        + +YDP
Sbjct: 188 DILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKLKL--------KNVYDP 239

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L       +  G           +GQE+   T+ +    M++  +       +
Sbjct: 240 TCGSGSLLLRVKREASSVGK---------IYGQEMNRTTYNLARMNMILHGVHYADFEII 290

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                Q  TL     T  +F   ++NPPF  KW      +  + +  + G+  P     S
Sbjct: 291 -----QEDTLEHPQHTHLKFDAIVANPPFSAKWSASPLFMNDD-RFAQYGKLAP----SS 340

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
              M F+ H+ + L       G  A+VL    LF G A   E  IR++++E  + I+A++
Sbjct: 341 KADMAFVQHMFHHL----EDDGTMAVVLPHGVLFRGAA---EGHIRQFMIEKLNCIDAVI 393

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++F+ T+I T + +L  RK  +    +  I+A++ +  +    K +  +  +   +
Sbjct: 394 GLPANIFYGTSIPTCVLVL--RKCRKHNDSILFIDASNDFEKV----KTQNRLLPEHIDK 447

Query: 452 ILDIYVSREN-GKFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           I D Y   +   K+S +            + + R +      ++  L  +  +I   +
Sbjct: 448 IADTYNDWKALEKYSHIATLEEIRNNDYNLNIPRYVDTFEAEEEIDLNAVAQEIRDLE 505


>gi|227508544|ref|ZP_03938593.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191876|gb|EEI71943.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 532

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 217/554 (39%), Gaps = 69/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-------KYLAFGGSNI 67
           +W  A DL G+   ++F   IL     R L   ++   + + +       +         
Sbjct: 19  LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78

Query: 68  DLESFVKVAGYSFYNTS-------------EYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           DL + +K +   F                  + +  L  +       +      D+ K +
Sbjct: 79  DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FED D +S+       E++ L+ K+  N + I+ H + +   V+ + YE+LI +F +   
Sbjct: 139 FEDMDLASSRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAATAG 198

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  + + L+    + +        RT+YDPT G+G  L    ++     
Sbjct: 199 KKAGEFYTPQQVSKVLSQLVTLNREEV--------RTVYDPTMGSGSLLLRVGDYAK--- 247

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +   +GQEL   T+ +    ML+  +          +++QG TL  D F  + 
Sbjct: 248 -------VAEYYGQELNGTTYNLARMNMLMHGINYS-----RFDLRQGDTLENDQFPERT 295

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+   W         +  + E  R        S     F+ H+   L+    
Sbjct: 296 FDAVVANPPYSANWNAT------DKLDDERFRKYGKTAPKSKADFAFVEHMLYHLKT--- 346

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWIL 410
             GR A+VL    LF G A   E +IR++++E D  ++A++ +P +LF+ T+I T + + 
Sbjct: 347 -DGRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVLVF 402

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              +       +  I+A+  +   +N    +  + D+  ++I+D Y  R++  KF+ + D
Sbjct: 403 DKSRINH---DILFIDASKDFEKGKN----QNNLTDENVKKIIDTYKDRKDVKKFAHVAD 455

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
           +         +  P R     +      ++  +   K +    S        M+  +   
Sbjct: 456 FNEIKENEFNLNIP-RYVDTFEPEPPVDVDKLVADIKDTDEQISKLESEFSSMLDDLEGK 514

Query: 530 GWAESFVKESIKSN 543
                     IK  
Sbjct: 515 NPVAQQQLTKIKEL 528


>gi|330957222|gb|EGH57482.1| type i restriction enzyme EcoR124II M protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 519

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 123/532 (23%), Positives = 206/532 (38%), Gaps = 69/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T   A+L   IW  A D+ G     DF + +L     R +        +       
Sbjct: 1   MT-STQQRAALQRQIWAIANDVRGAVDGWDFKQYVLGTLFYRFISENFVDYITGGDSSVN 59

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD----- 109
                + D       +  +K  GY F   S+   +     +T ++L + +    D     
Sbjct: 60  YPSMEDDDPLISAAKDDAIKTKGY-FIAPSQLFSNVAAKASTNDSLNTDLKRIFDAIESS 118

Query: 110 --------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                   + K +F DFD +S        +K   L  + K  S +E    D     +  +
Sbjct: 119 ANGYASEQDIKGLFADFDTTSNRLGNTVADKNKRLADVLKGVSKLEFGSFDASHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQE+   T+ +    M +  +  D       +IQ
Sbjct: 231 SLLLQAKKHFDAHVIQDG------FFGQEVNHTTYNLARMNMFLHNINYDK-----FDIQ 279

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL    F   K F   +SNPP+  KW   +D            RF P   L   S  
Sbjct: 280 LGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSEDPTLINDD-----RFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +L+  KT+      Q I+A+ L+    N      ++ D    +I+ 
Sbjct: 388 PNLFFGTTIAVNILVLAKNKTDTT---TQFIDASALFKKGTN----NNLLEDAHVERIMQ 440

Query: 455 IYVSREN-GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++ S+EN   F++ +           + V   +      +   +A+L  ++ 
Sbjct: 441 VFDSKENVDHFAQSVPLEKVAAIDYNLSVSSYVEARDTREVVNIAQLNLELK 492


>gi|78044904|ref|YP_359683.1| type I restriction-modification system subunit M [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997019|gb|ABB15918.1| type I restriction-modification system, M subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 814

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 116/593 (19%), Positives = 228/593 (38%), Gaps = 57/593 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L   ++K A+ L G    +++ + I     L+         +  +   Y   G S+
Sbjct: 9   TLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSD 68

Query: 67  IDLESFVKVAGYS--FYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFEDFD 119
             ++   +       FY   +     + +      N  N   S +   +     + +  D
Sbjct: 69  EQIKELTEDPNSYDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHID 128

Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F++T  +++ K   L  +  +F+   L P++     ++   YE+L++ F     +   +F
Sbjct: 129 FNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPDLLGAAYEYLLKEFADSAGKKGGEF 188

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V  L   L+           PG   T+YDPT G+GGFL +A ++V + G      
Sbjct: 189 YTPAGVKKLMVRLV----------KPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYN- 237

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFH 293
             L  +GQEL   T ++C   M++  +          +I+    L+  +F      KRF 
Sbjct: 238 --LGLYGQELNGLTWSICKMNMILHGISD-------AHIENEDVLTTPMFLENGYIKRFD 288

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPF       ++      +  E  ++G          ++FL H+   L+      
Sbjct: 289 RVLANPPFS------ENYTRANMQYPERFKYGFTPETGKKADLMFLQHMIASLK----DD 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G  A V+    LF G     E  IR  +++  +IEAI+ LP  LF+ T I   + +++  
Sbjct: 339 GIMATVMPHGVLFRGGQ---EKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKN 395

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRT 472
           K E  + K+  INA   +   RN    +  +  +   +I++++   +E   +SR++D + 
Sbjct: 396 KPEHLKNKILFINADREYGEGRN----QNFLRPEDIEKIVNVFDEKKEIPGYSRLVDIKE 451

Query: 473 FGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKL---SPLHQSFWLDILKPMMQQI 526
                  + + R +  S   +   + A L   +  R++       + F +     + ++ 
Sbjct: 452 IEENDFNLNIRRYVDNSPEPEIEDVRAHLTGGVPLREVRRYEEQFKKFGISYAILLEKKD 511

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
             Y      + E  +  E      +   +                  + +  G
Sbjct: 512 EHYLEFNDLITEKSQIREVLENANEVKNTIAKHKEMLLNWWQEVEQEILEFYG 564


>gi|194426653|ref|ZP_03059207.1| type I restriction-modification system, M subunit [Escherichia coli
           B171]
 gi|194415392|gb|EDX31660.1| type I restriction-modification system, M subunit [Escherichia coli
           B171]
 gi|195183370|dbj|BAG66907.1| predicted type I restriction-modification system methyltransferase
           subunit [Escherichia coli O111:H-]
 gi|323158215|gb|EFZ44307.1| type I restriction-modification system, M subunit [Escherichia coli
           E128010]
 gi|323939693|gb|EGB35897.1| type I restriction-modification system [Escherichia coli E482]
          Length = 518

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 212/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+     VQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---NVQFIDASELFKKETN----NNILTDAHIEQIMQVF 441

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 442 ASKEDVAHLAKSVAFEAVVANDYNLSVSSYVEAKDNREIINIAELNAELKTTVSKIDQLR 501

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 502 KDIDAIVAE 510


>gi|314934744|ref|ZP_07842103.1| type I restriction-modification system, M subunit [Staphylococcus
           caprae C87]
 gi|313652674|gb|EFS16437.1| type I restriction-modification system, M subunit [Staphylococcus
           caprae C87]
          Length = 518

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 214/544 (39%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AF 62
              A L   +W  A DL G+    +F   IL     R L   +E T + +  +     + 
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSARLLAEDNITYSE 68

Query: 63  GGSNIDLESFVK---VAGYSFYNTSEYSLSTLGSTNTRN-----NLESYIASFSDNAKAI 114
             +N D    V+   +    F    E   S L +          +L + I +  ++ +  
Sbjct: 69  AMNNEDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFEIEDLSNAIKNVENSTRGH 128

Query: 115 ---------FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                    F+D D +S+        +  L+ K+  N S +      +   ++ + YE+L
Sbjct: 129 ESEDDFIHLFDDMDLNSSRLGNTNAARTKLIGKVMMNISTLPFVHSDLEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                               +GQE    T+ +    ML+  +        +  I+ G TL
Sbjct: 241 VGREAKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIENGDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                 G++F   ++NPP+  KW  +   ++ E +  + G+  P     S     F+ H+
Sbjct: 286 EDPAHRGEQFDAVVANPPYSAKWSAEPSFLDDE-RFSDYGKLAP----KSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IYHL----DDEGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +    +  +    V  I+A+  +   +N    +  + D+   +I++ Y  RE 
Sbjct: 394 SIPTCVLVFKKCRKAD--DDVVFIDASQSFEKGKN----QNHLTDEDVEKIVETYSKRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +   +     + +     +   +I +
Sbjct: 448 IDKYSYVASLDEIKENDYNLNIPRYVDTFEEEEPIDLDQVQQQLKDIDKEIANVESEINE 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|319428170|gb|ADV56244.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens 200]
          Length = 523

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/536 (23%), Positives = 207/536 (38%), Gaps = 73/536 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A L   IW  A D+ G     DF + +L     R +    E   +   E   
Sbjct: 1   MTSL-QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESVN 59

Query: 59  YLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y A   S+ ++    +  ++  GY F   S+   +   + +   NL + +A+        
Sbjct: 60  YTAMDDSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLATIFAAIENS 118

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHP-----DTVPDR 153
                   + K +F DFD +S         K   L  + K  +G+         +     
Sbjct: 119 ANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQID 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP 
Sbjct: 179 LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L  A  H                 GQEL   T+ +    M +  +  D      
Sbjct: 231 AGSGSLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK----- 279

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NIQ G TL +  F   K F   +SNPP+   W    D            RF P   L  
Sbjct: 280 FNIQLGDTLIEPHFLDDKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAP 334

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +
Sbjct: 335 KSKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETV 387

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N       ++++   
Sbjct: 388 ISLAPNLFFGTTIAVNILVLSKHKTDTT---TQFIDASGLFKKETN----NNTLSNEHIE 440

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           QI+ ++ S+EN   F++ +D          + V   +      +   +  L A++ 
Sbjct: 441 QIVKVFASKENVDHFAKSVDLDVIAGNSYNLSVSSYVEAKDNRELVDITELNAELK 496


>gi|306815459|ref|ZP_07449608.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Escherichia coli NC101]
 gi|305851121|gb|EFM51576.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Escherichia coli NC101]
          Length = 539

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 188/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +R+G+   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRDRQGETLFIDARNLGTMI---SRTTKELTTEDIATIADTYHAW 442


>gi|294339001|emb|CAZ87346.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
 gi|294341828|emb|CAZ90257.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
          Length = 521

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 100/477 (20%), Positives = 185/477 (38%), Gaps = 61/477 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------- 59
              L   +W  A+ L       ++  ++L    ++ +  A +  R  ++ ++        
Sbjct: 2   NQDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKTQFNDPASDLY 61

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDN 110
              A   +    E         F+        TL +     ++          I + +  
Sbjct: 62  LPDAADQAAALEERDYYTMANVFWVPEVARWETLRAQAKLWDIGIRIDQALDAIEADNPR 121

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K I +     + +    + G + ++    S I     T    V+  +YE+ + +F S  
Sbjct: 122 LKGILDKRYGRAQL----EPGKMGELVDLVSTIGFGTGTQAKDVLGEVYEYFLGQFASAE 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  VV +   +L                 +YDP CG+GG    +   +   
Sbjct: 178 GKKGGQFYTPASVVKVLVEVLAPHQG-----------KVYDPCCGSGGMFVQSEKFIESH 226

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IR +      D +   +   T  +D     
Sbjct: 227 GGRFG---DISIYGQEANPTTWRLVAMNLAIRGM------DFNLGKEPADTFHRDQHPDL 277

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF          ++         R+  G P  S+ +  +L H+   L    
Sbjct: 278 KADYVLANPPFNISDWGGDRLLDD-------KRWLYGTPNPSNANYAWLQHILWHL---- 326

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  G+A +VL++  + + +  + E  IR+ ++E D++E +VALP  LFF T I   LW L
Sbjct: 327 NANGQAGVVLANGSMSSNQ--NNEGTIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFL 384

Query: 411 SNRKT---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL-DIYVSRENGK 463
           +  KT    +RRG+V  I+A  L    R E +  R+ +D+   +I   ++  R++G+
Sbjct: 385 TKSKTAHGRDRRGEVLFIDARKLG---RMETRVNRVFDDEDVARIAGTVHRWRQDGE 438


>gi|331681327|ref|ZP_08381964.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
 gi|331081548|gb|EGI52709.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
          Length = 539

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 189/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +  +T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPANTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +R+G+   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRDRQGETLFIDARNLGTMI---SRTTKELTTEDIATIADTYHAW 442


>gi|309972663|gb|ADO95864.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae
           R2846]
          Length = 514

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/530 (21%), Positives = 198/530 (37%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +     NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL    F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 337 AFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K      + Q I+A+ L+ S  N      ++ ++   QIL ++
Sbjct: 390 LFYGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNLLEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    ++++             V   +      +   +  L A I 
Sbjct: 443 ADKEDVPHLAKLVPIEEIAKNEYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|146295059|ref|YP_001185483.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566749|gb|ABP77684.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 499

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/520 (23%), Positives = 210/520 (40%), Gaps = 53/520 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       E+      + 
Sbjct: 5   NIKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFIDAMEQVGDEELAK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D+   +++     +         +G      +    I   +     IF D  +++   R
Sbjct: 65  GDMFHRIQIPQECHWKDVFAETKDIGQA--LKDAFRGIELANPKLHGIFGDASWTNK-ER 121

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR +V L
Sbjct: 122 LSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDP CGTGG L + ++HV + G     P +L   GQE
Sbjct: 181 MVNIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302
               T A+    + +   E         +I +G TL +  F      + F   ++NPPF 
Sbjct: 228 KNLTTEAIARMNLFLHGQED-------FDIVRGDTLREPKFLVSDRLETFDCVIANPPFS 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K                 GR   GL   ++G   ++ H+   L    N  GR A+VL  
Sbjct: 281 LKEWGYDL-----WSADPYGRKQYGLAPKTNGDFAWVQHMFASL----NEQGRMAVVLPH 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E  IR  LL+ + IEAI+ + ++LF+ T I   + +L   +  + +  V
Sbjct: 332 GVLFRGGA---EGAIRTKLLQENRIEAIIGVASNLFYGTGIPACILVLRKSRPADHQDHV 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--------VSRENGKFSRMLDYRTFG 474
            +INA +++T  R     +  +++DQ   I +IY         + E    +R +      
Sbjct: 389 LIINAEEIFTKGRA----QNTLSNDQADDIFNIYRQQETLGPKAEEIEGVARWVALTEIE 444

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITW-RKLSPLHQS 513
                +     +   L++  +   EA   + +KL+ L Q+
Sbjct: 445 ENDFNLNIARYVQKPLEEETITVEEALKDFQQKLAALEQA 484


>gi|119632845|gb|ABL84420.1| type I DNA methylase [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 539

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/466 (22%), Positives = 190/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E
Sbjct: 15  FEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEG---QGDFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  ++   + K+ +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNDAELTKDPRFA-----GYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               R+G+   I+A +L T I    +  + +  D    I D Y + 
Sbjct: 400 GYRNRQGETLFIDARNLGTMI---NRTTKELTADDIVTIADTYHAW 442


>gi|51893048|ref|YP_075739.1| type I restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856737|dbj|BAD40895.1| type I restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 537

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/539 (20%), Positives = 204/539 (37%), Gaps = 74/539 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-----FG 63
             +   +W  A+ L       ++  ++L    L+ +  +    R  +R+         + 
Sbjct: 19  NEMKRTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDSFVAQRERLRKVLADPASDLYL 78

Query: 64  GSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNA 111
               D E+ ++   Y      F+   +    T+ +   + ++ +        I   +   
Sbjct: 79  DDPADREAALEEREYYTMDNVFWVPDQARWETIRAHAKQPDIGARIDQALEAIEEENPRL 138

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K + +     + +    + G L ++    S I    +     V+  +YE+ + +F S   
Sbjct: 139 KGLLDKRYGRAHL----EPGRLGELVDLISTIGFGEEHRARDVLGEVYEYFLGQFASAEG 194

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV L  A+L                 +YDP CG+GG    A   +   G
Sbjct: 195 KKGGQFYTPASVVKLLVAILAPYKG-----------KVYDPCCGSGGMFVQAERFLESRG 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +GQE  P T  +    + IR L      D +   +   T  ++     R
Sbjct: 244 GRFG---DLSIYGQEANPTTWRLVAMNLTIRGL------DFNLGKEPADTFHRNQHPDLR 294

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +  V+         R+  G P   + +  +L H+   L     
Sbjct: 295 ADYILANPPFNMSDWGGERLVDD-------PRWIYGTPPAGNANFAWLQHILWHLAPA-- 345

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +VL++  + + +  + E EIR+ ++E D++E +VALP  LFF T I   LW L 
Sbjct: 346 --GQAGVVLANGSMSSQQ--NNEGEIRKNMVEADVVEVMVALPPQLFFNTQIPACLWFLC 401

Query: 412 NRKT---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSREN------ 461
             KT    +RRG+V  I+A  +    R E +  R+++D++  +I +  ++ R++      
Sbjct: 402 KDKTKNGRDRRGEVLFIDARKMG---RMETRVNRVLDDEEIAKIANTVHLWRQDREAPPG 458

Query: 462 ------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   F R +           VL P R     +        A+   R  + L +  
Sbjct: 459 QVYEDVPGFCRAVKLEEIAANGY-VLTPGRYVGAEEVEDDDETFAEKMERLTAELAEQM 516


>gi|302871461|ref|YP_003840097.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574320|gb|ADL42111.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 814

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/587 (19%), Positives = 227/587 (38%), Gaps = 58/587 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   +++ A+ L G    +++ + I     L+      E  R  +R+++ 
Sbjct: 1   MASDKITLRQLETHLFRAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELRDRFQ 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
               S   ++  ++       +F+   +     +        N  N   S +   +    
Sbjct: 61  NMRFSEEQIQELLEDPVSYSDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELD 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            + +  DF++   +   K   L  +  +F+  +L P       ++   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQEL   T ++C   M++  +          +I+    L+  +F+  
Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIND-------AHIENEDVLTTPMFSEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              KRF   L+NPPF + + +     E+  K G     G          ++FL H+   L
Sbjct: 281 GYIKRFDRILANPPFSENYSRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 K----DDGVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFS 465
           + +++  K E  + K+  INA   +   RN    +  +  +   +I+ ++   +E  K+S
Sbjct: 388 IIVINKNKPEHLKNKILFINADREYGEGRN----QNFLRPEDIEKIVTVFDEKKEIPKYS 443

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKL---SPLHQSFWLDIL 519
            ++D +        + + R +  S   +   + A L   +   ++       + F L   
Sbjct: 444 SLVDIKEIEENDFNLNIRRYVDNSPDPEIEDVRAHLFGGVPKSEVLLYEKQLRKFNLSYD 503

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
             + ++   Y   +  + +  +  E      +   +           
Sbjct: 504 ILLAEKSEDYLEFKKDITDRNQIRELIDNCTEVKITIGKHKEKLLEW 550


>gi|329123773|ref|ZP_08252331.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|327469260|gb|EGF14731.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 514

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/530 (21%), Positives = 202/530 (38%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MTIAMQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFNEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 337 AFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    ++ + +           V   +      +   +  L A I 
Sbjct: 443 ADKEDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|251771139|gb|EES51722.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 525

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 110/545 (20%), Positives = 205/545 (37%), Gaps = 78/545 (14%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           T  T  A+ L     +W+ A+ L  +    ++  V+L    L+ +  A E     +    
Sbjct: 6   TSKTSDASPLGFEAKLWQAADKLRNNMDAAEYKHVVLGLIFLKYVSDAFEEFHDRLISTE 65

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
           +A      D + +   A   F+   E   STL +   R       ++    I   + + K
Sbjct: 66  IAAEADPEDPDEYR--AENIFWVPPEARWSTLQAHAKRPEIGKIIDDAMVAIERENKSLK 123

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVS 171
           AI       +++ +      L ++      I L   D     ++  +YE+ + +F S   
Sbjct: 124 AILPKDYARTSLDK----QRLGELVDLVGTIGLGQKDHRSKDILGRVYEYFLSQFASAEG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR VV +   +L                 ++DP CG+GG    +   +   G
Sbjct: 180 KRGGQFYTPRSVVSVLVEMLAPYKG-----------RVFDPCCGSGGMFVQSEKFIEAHG 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + +R +E+      +   +   +  +DL    +
Sbjct: 229 GRIG---DISIYGQESNNTTWKLAAMNLALRGIEA------NLGKENDDSFHRDLHPDLK 279

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +       +  E  R+  G+P   + +  ++ +    L     
Sbjct: 280 ADYILANPPFNSSDWGGE-------RLREDKRWVYGVPPTGNANYAWVQNFIYHL----A 328

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL++  L + +  S E EIR+ ++E D+++ IVA+P  LF+ T I   LW +S
Sbjct: 329 PNGVAGFVLANGSLSSNQ--SNEGEIRKSMVEADIVDCIVAMPGQLFYSTQIPVSLWFVS 386

Query: 412 NRKT----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             K            +R G++  I+A  L        +  R ++ D   +I D Y +   
Sbjct: 387 RNKKNGKGVEGRPLRDRSGEILFIDARKLGFM---SDRTHRDLSVDDLARITDTYHNWRG 443

Query: 462 G------------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                        K +++ + R+ G+    VL P R     +         +   R  + 
Sbjct: 444 DGTGTYEDVQGFCKSAKLEEVRSHGH----VLTPGRYVGAEEIEDDGEPFEEKMKRLTTQ 499

Query: 510 LHQSF 514
           L++ F
Sbjct: 500 LNEQF 504


>gi|135199|sp|P10484|T1M1_ECOLX RecName: Full=Type I restriction enzyme EcoR124II M protein;
           Short=M.EcoR124II
 gi|4467402|emb|CAA31541.1| unnamed protein product [Escherichia coli]
          Length = 520

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/549 (22%), Positives = 212/549 (38%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 3   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 62  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 121

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 122 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 182 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 233

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 234 LLQAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 282

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 283 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 338 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+     VQ I+A++L+    N      I+ D    QI+ ++
Sbjct: 391 LFFGTTIAVNILVLSKHKTDT---NVQFIDASELFKKETN----NNILTDAHIEQIMQVF 443

Query: 457 VSRENGKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLH 511
            S+E+      S   +        + V   +      +   +A L A++  T  K+  L 
Sbjct: 444 ASKEDVAHLAKSVAFETVVANDYNLSVSSYVEAKDNREIIDIAELNAELKTTVSKIDQLR 503

Query: 512 QSFWLDILK 520
           +     + +
Sbjct: 504 KDIDAIVAE 512


>gi|319778988|ref|YP_004129901.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Taylorella equigenitalis MCE9]
 gi|317109012|gb|ADU91758.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Taylorella equigenitalis MCE9]
          Length = 497

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 111/518 (21%), Positives = 202/518 (38%), Gaps = 61/518 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W+ A  LWG     D+ KVI+    L+ +    +     + ++   F     D++
Sbjct: 6   FEKQLWEAACKLWGSIPAADYRKVIIGLIFLKYVSTTFDKRFQQLLDEGEGFEN---DID 62

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
           ++   +   FY   E   + +   +         +N    I + + +   +      S  
Sbjct: 63  AY--TSKNLFYIPEEARWNHISKASHTEKIGVVIDNAMRQIETQNKSLNGVLPKIYASPD 120

Query: 124 IARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           I +     +L  +   F + I          ++   YE+ I  F S       +F TP  
Sbjct: 121 IDK----HVLSDVVDLFTNSINFESIEQNKDILGRTYEYCIANFASYEGRRGGEFYTPAS 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V     +L           P     +YDP  G+GG +  +  ++     H      +  
Sbjct: 177 IVKTMVEIL----------KPQSGMRIYDPCMGSGGMIVQSAKYIEQ---HAGKRFSISV 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P+T  +    M IR +++      +       T   DL   K+F   ++NPPF 
Sbjct: 224 YGQESNPDTWKMAKMNMAIRGIDA------NLGQHHADTFKNDLHPQKKFDIIMANPPFN 277

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 ++ VE         R+  G+P  S+ +  ++ H+ + L       G+  +VL++
Sbjct: 278 LSEWGQENLVED-------IRWKYGVPPKSNANYAWIQHMIHHLAT----NGKIGLVLAN 326

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L +  +G  E EIRR ++E+DLIE IVALPT LF+   I   LW ++  K  +++GK 
Sbjct: 327 GALSSQSSG--EGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKT 382

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYRTFGYR 476
             I+A ++   +    +  R   D+    +   +   +NGK      FS + +      +
Sbjct: 383 LFIDARNIGYMV---DRTHRDFTDEDIDLLAKTFEDFQNGKLEEKQGFSAIANLEDIAKQ 439

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
              +L P R   I +         +   R  S L + F
Sbjct: 440 DF-ILTPGRYVGIEELEDDGVPFEEKMTRLTSELSEMF 476


>gi|283458000|ref|YP_003362607.1| type I restriction-modification system methyltransferase subunit
           [Rothia mucilaginosa DY-18]
 gi|283134022|dbj|BAI64787.1| type I restriction-modification system methyltransferase subunit
           [Rothia mucilaginosa DY-18]
          Length = 569

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/552 (21%), Positives = 209/552 (37%), Gaps = 74/552 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
                 A L + IW+ A DL G     DF + +L     R L    E     + E Y   
Sbjct: 45  NRNAERAQLHSTIWRIANDLRGSVDGWDFKQYVLGMLFYRYLS---ESQARFIDENYTLK 101

Query: 60  -----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
                L     N      V      F   S+   +         NL   +A+        
Sbjct: 102 GPFVELKDEDCNEGGRQVVLRERGFFLLPSQLFSNVYAKARQDQNLNETLANVFKAFEES 161

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHP--DTVPDRVMS 156
                  +N K +F+DF   S    +    +   L K+    +G+ L    +   +    
Sbjct: 162 ARGTESEENVKGLFDDFVLDSNKLGVSPAARHENLLKLMDAVAGMNLGKGYEDSENDAFG 221

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + +   +   ++ TP++V  L   + +D  DA        IR++YDP CG+
Sbjct: 222 DAYEYLMGMYAANAGKSGGEYYTPQEVSELLAKIAMDGRDA------DKIRSVYDPACGS 275

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +       K    L   GQE+   T+ +C   M++  +  D       +I
Sbjct: 276 GSLLLKFKRELG------KNSKGLRFIGQEINLTTYNLCRMNMMLHGVPVD-----EFSI 324

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
             G TL        +       F   +SNPP+  KW+ D D   K        R+ P   
Sbjct: 325 AHGDTLIDPKHRNGKNPKFVEPFGAIVSNPPYSTKWKGDDDPTLKHDD-----RYAPAGV 379

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F MH+   L       G AAIV     L+   A   E  IR +LL  + +
Sbjct: 380 LAPKSKADLAFTMHMLKSLHEA----GTAAIVEFPGVLYRSGA---ERTIREYLLIENRV 432

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP++LF+ T+IAT + +L   + ++    V  ++A+ L+   +N    + I+   
Sbjct: 433 DAVIQLPSNLFYGTSIATCILVLKKGRRKDHS--VLFVDASALFDKGKN----QNILGKS 486

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
            R +ILD+  +RE    FS ++  +    +   +     +     +  +  +E +     
Sbjct: 487 HREKILDVLATREEREHFSALVPVQKLLEQEANLAVSSWVEPEDTRERVDIVELNSRIEN 546

Query: 507 LSPLHQSFWLDI 518
           +        ++I
Sbjct: 547 IVARQAQLRVEI 558


>gi|226310298|ref|YP_002770192.1| type I restriction modification system DNA methylase [Brevibacillus
           brevis NBRC 100599]
 gi|226093246|dbj|BAH41688.1| type I restriction modification system DNA methylase [Brevibacillus
           brevis NBRC 100599]
          Length = 515

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 204/525 (38%), Gaps = 63/525 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61
              A L + IWK A D+ G     DF + +L     R +        E    +V+   L 
Sbjct: 5   AQRAELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDESVKYAELP 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------------ 109
                 +++         F   S+   +   + NT  +L + +A+               
Sbjct: 65  DDIITKEIKEDAIKTKGYFIYPSQLFANIAKTANTNESLNTDLAAIFSAIESSANGYPSE 124

Query: 110 -NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
            +   +F DFD +S        +K+  L  + K   G+     +     +  + YE+LI 
Sbjct: 125 LDINGLFADFDTTSNRLGNTVKDKSSRLAAVIKGVEGLNFGDFEDSHIDLFGDAYEYLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQCVSKLIAQLAIHNQTTINK--------IYDPAAGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                             +GQE+   T+ +    M +  +  D       NI  G+TL  
Sbjct: 237 KQFDAHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDK-----FNIALGNTLLD 285

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F  ++ F   +SNPP+   W    D      +     RF P   L   S     F++H
Sbjct: 286 PHFGDEKPFDAIVSNPPYSVNWIGSDDPTLINDE-----RFAPAGVLAPKSKADFAFVLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+ T
Sbjct: 341 TLSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVISLAPNLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IA  + +LS  KT+    K Q I+A+        +     I+ D+   +I+ I+ ++E+
Sbjct: 394 SIAVNILVLSKHKTD---NKTQFIDAS--GVDFYKKETNNNILTDEHIERIMKIFNNKED 448

Query: 462 -GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
               ++ +DY         + V   ++     +   +  L A+I 
Sbjct: 449 IDHVAKSVDYDAIVQKNYNLSVSSYVKAKDTREVIDINELNAEIK 493


>gi|145637382|ref|ZP_01793042.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittHH]
 gi|145269474|gb|EDK09417.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittHH]
          Length = 514

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 115/530 (21%), Positives = 204/530 (38%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ ++A++AL  +
Sbjct: 337 AFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    ++ + +           V   +      +   + +L A+I 
Sbjct: 443 ADKEDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVIDINKLNAEIK 492


>gi|323497665|ref|ZP_08102681.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326]
 gi|323317248|gb|EGA70243.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326]
          Length = 538

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 188/467 (40%), Gaps = 52/467 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  + +       + ++++
Sbjct: 17  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQQMIDD---EQEAFVEMK 73

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY       S +     ++N+        S I   + + K    D  FS  
Sbjct: 74  EFYQQ-DNIFYLEEASRWSYVKKHAKQDNIAVIIDTALSNIEKANPSLKGALPDNYFSRQ 132

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++K   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ V
Sbjct: 133 DLEVKKLASLIDTIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSV 192

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T +L                 +YDP CG+GG    ++  V     H      +  +
Sbjct: 193 VTLLTEMLEPFQG-----------KIYDPACGSGGMFVQSLKFVKQ---HEGRTKDIAIY 238

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL   T+ +    + IR L        +   +   T   D     +  Y ++NPPF  
Sbjct: 239 GQELTSTTYKLAKMNLAIRGLSG------NLGERPADTFFADQHKDLKADYIMANPPFNI 292

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
              +D++ + K+ +       G   P   + +  +++H+ +KL    +  G A  VL++ 
Sbjct: 293 SQWRDENELTKDPRFS-----GYRTPPTGNANYGWILHMLSKL----SETGTAGFVLANG 343

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------E 416
            +      SGE EIR+ L+END++E ++ALP  LF+ T I   +W ++  K         
Sbjct: 344 SM--SSNTSGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNKQANAAKGYR 401

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +R  +   I+A ++ T      +  + +  D    I D Y +  +  
Sbjct: 402 QREKETLFIDAREMGTM---TSRVHKELTVDDIALIADTYHAWRSDD 445


>gi|2408224|gb|AAB70709.1| HsdM [Klebsiella pneumoniae]
          Length = 539

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/466 (23%), Positives = 189/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W  A  L G  + +++  V+L    L+ +    E  R  + ++     G  +++E
Sbjct: 15  FEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMEDEG---QGDFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L   +             +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFEG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  ++   + K+ +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNDAELTKDPRFA-----GYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAADPAK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               R+G+   I+A +L T I    K    +  D    I D Y + 
Sbjct: 400 GYRNRQGETLFIDARNLGTMINRTIK---ELTADDIAIIADTYHAW 442


>gi|170768502|ref|ZP_02902955.1| type I restriction-modification system, M subunit [Escherichia
           albertii TW07627]
 gi|170122606|gb|EDS91537.1| type I restriction-modification system, M subunit [Escherichia
           albertii TW07627]
          Length = 539

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 188/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEEILWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +   T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPADTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + K+ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTKDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--- 417
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPTK 399

Query: 418 ----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               R+G+   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRNRQGETLFIDARNLGTMI---SRTTKELTTEDIATIADTYHAW 442


>gi|242372574|ref|ZP_04818148.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
 gi|242349791|gb|EES41392.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
          Length = 518

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 213/544 (39%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGG 64
              A L   +W  A DL G+    +F   IL     R L   +E + + +  E  +++  
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEESSAKLLSEDNISYQE 68

Query: 65  SNIDLE-------SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------- 107
           +  + +         ++  G+     + +S       N    +E    +           
Sbjct: 69  AMNNDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFEIEDLSNAIKNVENSTRGH 128

Query: 108 --SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              D+   +F+D D +S+        +  L+ K+  N S +      +   ++ + YE+L
Sbjct: 129 ESEDDFIHLFDDMDLNSSRLGNTNAARTKLIAKVMMNISTLPFVHSDLEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G  L  
Sbjct: 189 IGQFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                               +GQE    T+ +    ML+  +        +  I+ G TL
Sbjct: 241 VGRESKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIENGDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                 G++F   ++NPP+   W  +   ++ E +  + G+  P     S     F+ H+
Sbjct: 286 EDPAHKGEQFDAVVANPPYSANWSAESSFLDDE-RFSDYGKLAP----KSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IYHL----DDEGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +    +  +    V  I+A+  +   +N    +  + D+   +I+D Y  RE 
Sbjct: 394 SIPTCVLVFKKCRQAD--DDVVFIDASQSFEKGKN----QNHLTDEDVDKIVDTYSQRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +   +     + +     +   +I +
Sbjct: 448 IDKYSYVATLDEIKENDCNLNIPRYVDTFEEEEPIDLEQVQQQLKDIDKDIANVESEINE 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|242372373|ref|ZP_04817947.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
 gi|242349892|gb|EES41493.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
          Length = 518

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/544 (20%), Positives = 213/544 (39%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGG 64
              A L   +W  A DL G+    +F   IL     R L   +E T   +  E  +++  
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSGRLLSEDNISYQE 68

Query: 65  SNIDLE-------SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------- 107
           +  + +         ++  G+     + +S       N    +E    +           
Sbjct: 69  AMNNDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFEIEDLSNAIKNVENSTRGH 128

Query: 108 --SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              D+   +F+D D +S+        +  L+ K+  N S +      +   ++ + YE+L
Sbjct: 129 ESEDDFIHLFDDMDLNSSRLGNTNAARTKLIAKVMMNISTLPFVHSDLEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G  L  
Sbjct: 189 IGQFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                               +GQE    T+ +    ML+  +        +  I+ G TL
Sbjct: 241 VGREAKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIENGDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                 G++F   ++NPP+   W  D   ++ E +  + G+  P     S     F+ H+
Sbjct: 286 EDPAHKGEQFDAVVANPPYSANWSADPSFLKDE-RFSDYGKLAP----KSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IYHL----DDEGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  ++   V  I+A+  +   +N    +  + D+   +I+  Y  RE 
Sbjct: 394 SIPTCVLVF--KKCRQQDDDVVFIDASQSFEKGKN----QNHLTDEDVDKIVKTYSQRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +   +     + +     +   +I +
Sbjct: 448 IDKYSYVATLDEIKENDYNLNIPRYVDTFEEEEPIDLEQVQQQLKDIDKDIANVESEINE 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|146291272|ref|YP_001181696.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens CN-32]
 gi|145562962|gb|ABP73897.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens CN-32]
          Length = 506

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 197/537 (36%), Gaps = 43/537 (8%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT     +   +   +W   +   G      +   IL    L+ +    +     +  +Y
Sbjct: 1   MTSTNQINQDDINKAVWAACDTFRGVISADTYKDFILTMLFLKYISDVYKDEYKKLVAQY 60

Query: 60  LAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                    +   + FV   G SF++  E              L +   +     K +F+
Sbjct: 61  GDNPELIHAMMSKQRFVLPEGASFWDLYEKRYEAGNGERIDKALHAIEEANGSKLKNVFQ 120

Query: 117 DFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
           D  F++     EK    LL  + ++F    + L  + V    ++ N YE+LI+ F +   
Sbjct: 121 DISFNTDRLGQEKQKNDLLRHLLEDFGKDILNLSTERVGSLDIIGNAYEYLIKHFAAGSG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A ++ TP +V  L    L           P     + DP  G+G  L      V    
Sbjct: 181 ATAGEYYTPPEVSTLLATAL----------EPVEGDQICDPCTGSGSLLLKCGAMVRKNS 230

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K        GQE    T A+    M +   E + R +    I+      KD      
Sbjct: 231 GSKKY----ALFGQEAIGSTWALAKMNMFLHG-EDNHRIEWGDTIRNPLLKEKDGNGLLH 285

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F    +NPPF        DA      N   GRF  G+P  + G   F+ H+   L+    
Sbjct: 286 FDVVTANPPFSLDKWGHDDA-----SNDPYGRFRRGIPPKTKGDYAFITHMIETLKPET- 339

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR  +V+    LF   +   E +IR+ L+E +L++ ++ LP  LFF T I   + I  
Sbjct: 340 --GRMGVVVPHGVLFRASS---EGKIRKQLIEENLLDTVIGLPEKLFFGTGIPAAILIFK 394

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
             KT++    V  I+A+  +   +N    +  + D+  ++I+D Y +RE+  K++ +  +
Sbjct: 395 KHKTDK---NVLFIDASREFKPGKN----QNQLTDENIQKIIDTYKARESVDKYAYLASF 447

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                    +  P  +    ++  +  +       +L    Q+    +   + +  Y
Sbjct: 448 DEIKENDFNLNIPRYVDTFEEEAEIDLVAVRTERVQLKNELQTLESQMEGYLKELGY 504


>gi|163798238|ref|ZP_02192170.1| type I restriction-modification system, M subunit [alpha
           proteobacterium BAL199]
 gi|159176486|gb|EDP61069.1| type I restriction-modification system, M subunit [alpha
           proteobacterium BAL199]
          Length = 505

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 114/523 (21%), Positives = 200/523 (38%), Gaps = 52/523 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           MT+   +   +    W   +   G      +   IL    L+ +           R++Y 
Sbjct: 1   MTDQ-LTQQQVNQTAWAACDTFRGVVDAGQYKDYILVMLFLKYISDHWNDHLETYRKQYG 59

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              A     ++ E FV   G SFY+  E              LE    +     + +F +
Sbjct: 60  GDEARIRRRLERERFVLPEGASFYDLYEARNEANIGERINIALERIEDTNRAKLEGVFRN 119

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            DF+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  +
Sbjct: 120 IDFNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  L   L           +P    T+ DP CG+G  L  A   V     
Sbjct: 180 KAGEFYTPSAVSRLLAKLA----------APKPGDTICDPACGSGSLLIRAAEEVGSEN- 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     +GQE+   T A+    M +   ++     +       S    +     +F
Sbjct: 229 -------FALYGQEVNGATWALARMNMFLHAKDA---ARIEWCDTLNSPALVEGDHLMKF 278

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF       ++A        +  RF  G+P  S G   F+ H+    E+    
Sbjct: 279 DVVVANPPFSLDKWGAENA-----DTDQFKRFWRGIPPKSKGDYGFITHMI---EIARRQ 330

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + +   
Sbjct: 331 SGRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDR 387

Query: 413 RK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
            +      E R  V  I+A+  +T     GK + ++++    ++L+ Y SR E  K+S  
Sbjct: 388 SREQGGANEARRDVLFIDASKEFTP----GKTQNVMDEAHIGKVLETYASRAEIEKYSHR 443

Query: 468 LDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                       + + R +      ++  +A L+  I   +  
Sbjct: 444 ASPEEIAENDFNLNIPRYVDTFEPEEEIDVAALQKQINTIEAE 486


>gi|170017258|ref|YP_001728177.1| Type I restriction-modification system, M subunit [Leuconostoc
           citreum KM20]
 gi|169804115|gb|ACA82733.1| Type I restriction-modification system, M subunit [Leuconostoc
           citreum KM20]
          Length = 531

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/545 (21%), Positives = 211/545 (38%), Gaps = 67/545 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVRE----- 57
           A  L   +W  A+ L G    +++   +L     + L         E       +     
Sbjct: 2   ATGLEQQLWAAADILRGKMDASEYKNYLLGLVFYKYLSDSELREVYEQENGQTTDFPTRS 61

Query: 58  -KYLAFGGS-NIDLESFVKV----AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
            +Y         D E   ++     GY    +  +      +     NL    A F+   
Sbjct: 62  IQYQTLMDWFEDDSEELAEIIQLQKGYFIKPSQLFYTYRQQADRYEFNLTDLQAGFNELE 121

Query: 109 ---DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              D  K +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEH--DGDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  + + +     +            +YDPT G+G  + +
Sbjct: 180 IGQFAAGAGKKAGEFYTPQAVSRIISEIAAIGQEDRAPFH------IYDPTMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++++       P  +  HGQEL   T+ +    +++  ++ D       N+  G TL
Sbjct: 234 IRRYLSN-------PKQVHYHGQELNTTTYNLARMNLILHGVDQD-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  T +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPTEEPHQFDAVVMNPPYSAKWS----AADKFLSDQRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F+ 
Sbjct: 337 HGFYHLK----DSGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFYG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +    ++ K + +++    ++I+  Y  R 
Sbjct: 390 TSIPTTVIILKKNRSSR---DVLFIDASQDF----DKQKTQNVLSPKHIQKIVSAYKERT 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +  K+S +  Y         +  P  +    D+  +  ++      K+         D+L
Sbjct: 443 DTEKYSHVASYDEIKENDFNLNIPRYVDTFEDEAPVDLVKVSDEISKIDQELSEKQSDLL 502

Query: 520 KPMMQ 524
             M +
Sbjct: 503 AMMNE 507


>gi|25028883|ref|NP_738937.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|23494170|dbj|BAC19137.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
          Length = 536

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 201/546 (36%), Gaps = 70/546 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A    R+ + ++ +A G ++
Sbjct: 13  TMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTD 72

Query: 67  IDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIF- 115
                 +           F+         L            N    I    D+A     
Sbjct: 73  DQTAMLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIM 132

Query: 116 -EDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFG 167
             +   S+T+ R+          L ++   F+              ++  +YE+ + +F 
Sbjct: 133 VANPALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKFA 192

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP                 L +        +YDP CG+GG        +
Sbjct: 193 RAEGKRGGEFYTP-----------AGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKFL 241

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +H+K    +  +GQEL   T  +    + I  L +      +   + G T ++DL 
Sbjct: 242 ---DAHNKDRTAIAVYGQELNERTWRMAKMNLAIHGLNA------NLGPRWGDTFARDLH 292

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++NPPF  K            +N E  R+  G+P  ++ +  ++ H+ +KL 
Sbjct: 293 PEMQADYIMANPPFNIKDWA---------RNEEDPRWRYGVPPKNNANYAWIQHIISKL- 342

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A +V+++  + +     GE +IR  L+E DL+  +VALPT LF  T I   +
Sbjct: 343 ---APGGSAGVVMANGSMSSNS--GGEGKIRAELVEADLVSCMVALPTQLFRSTGIPVCV 397

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           W  +  KT       +R G+V  I+A +L   I    +  R ++D+   +I D + +   
Sbjct: 398 WFFAKDKTVGDQGAIDRTGQVLFIDARNLGHMI---DRAERALSDEDIAKIADTFHTWRG 454

Query: 462 GKFSRMLDYRTFG--YRRIKVLRPLRMSFILDK---TGLARLEADI--TWRKLSPLHQSF 514
              ++   Y           +       + L      G A +E D      K+  L +  
Sbjct: 455 TPSAKGRTYEDEAGFCYSATLEEIKDADYALTPGRYVGAAEIEDDGEPIDEKIERLKKEL 514

Query: 515 WLDILK 520
                +
Sbjct: 515 LDQFDE 520


>gi|254470667|ref|ZP_05084070.1| type I restriction-modification system, M subunit [Pseudovibrio sp.
           JE062]
 gi|211959809|gb|EEA95006.1| type I restriction-modification system, M subunit [Pseudovibrio sp.
           JE062]
          Length = 504

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/533 (19%), Positives = 203/533 (38%), Gaps = 47/533 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    S   +    W   +   G    + +   +L    L+ +    +      +++Y 
Sbjct: 1   MSVARVSQDQINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYISDVWQDHYDGFKQQYG 60

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  ++   E FV   G SF +  +              L +   +     + +F+ 
Sbjct: 61  NEPELIAEMMKNEVFVLPEGASFGSLYDKRHQPGNGERIDVALTAIEEANGAKLRDVFQG 120

Query: 118 FDFSSTIARLE--KAGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F+S     E  K  +L  + ++F    + L P  V +  V+   YE+LI RF +   +
Sbjct: 121 ISFNSNNLGDEQQKNDILRHVLEDFARDEMNLRPSRVGNLDVIGGAYEYLISRFAATAGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+G  L      ++    
Sbjct: 181 KAGEFYTPAEVSELMAELVT----------PQEGDEICDPTCGSGSLLMKCGRQISARTG 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      GQE    T A+    M +   E++ + +    I+     +++    ++F
Sbjct: 231 ----KKTYALFGQEAIGSTWALAKMNMFLHG-ETNHQIEWGDTIRNPKLRTRE-DALRKF 284

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF       + A     +    GRF  GLP  + G   F+ H+   L+   + 
Sbjct: 285 DVVVANPPFSLDKWGIEQA-----EKDAFGRFSRGLPPKTKGDYAFISHMVETLK---DD 336

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+V+    LF G +   E +IR+ L+E +L++A++ LP  LFF T I   + I   
Sbjct: 337 TGRMAVVVPHGVLFRGSS---EGKIRKALIEENLLDAVIGLPEKLFFGTGIPAAILIFKK 393

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            K +     V  I+A+  +    N    +  +N+    +I+  Y +R+   K++ +    
Sbjct: 394 GKGD---NSVLFIDASREYVEGTN----QNQLNETHIAKIVKTYTARQTAEKYAYVAGLD 446

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                   +  P  +    ++  +     R E +    +++ L       + +
Sbjct: 447 EVKENDFNLNIPRYVDTFEEEEEIDLMAVRAEREQLKAEMTELEAKMDAYLKE 499


>gi|326407943|gb|ADZ65012.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. lactis CV56]
          Length = 531

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 215/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A  L   +W +A+ L G    +++   +L     + L  A                P RS
Sbjct: 2   ATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-- 109
                ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 62  TQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 110 ----NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                   +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRAPFH------IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++ +    H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLINPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +  +    K++      +   L
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVAVNTNLLKINEELVQQEQVLL 502

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        ES
Sbjct: 503 SLIDNFSESEENQALIES 520


>gi|163743541|ref|ZP_02150918.1| type I restriction system adenine methylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161383126|gb|EDQ07518.1| type I restriction system adenine methylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 520

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/474 (22%), Positives = 189/474 (39%), Gaps = 60/474 (12%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M   +  A    A  ++K A+ + G  + +++  V L    L+ +  A +     +    
Sbjct: 1   MANTSRQADLDFAADLFKAADKMRGGLEPSEYKHVALGLIFLKYISEAFQAMHDQL---- 56

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                   D E   +    + +   E +  +    N R      I    D+A    E   
Sbjct: 57  --AKDDFADPEDPEEYLAENIFWVPETARWSFIQDNAR---SENIGKIIDDAMEAIEAEP 111

Query: 120 FSSTIARLE---------KAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
            + T+  +             +L ++   FS +++H        ++  +YE+ I  F S 
Sbjct: 112 TNETLKGVLPKNYARPTLDKTMLGELVDLFSNVKMHDSADRARDLLGRVYEYFISGFASA 171

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TPR VV     +L                 +YDP CG+GG    +   + D
Sbjct: 172 EGKRGGEFFTPRSVVRTLVEMLEPYQG-----------RVYDPCCGSGGMFIQSEKFIED 220

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +   P  L  +GQE+   T  +    + +  +++D   D +       +  KD   G
Sbjct: 221 HGGN---PLNLSVYGQEINHTTWRLAKMNLAVHGIDADIAWDSAG------SFHKDAHPG 271

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  Y L+NPPF       +  +E +       R+  G P   + +  ++ H+ + L   
Sbjct: 272 LKADYILANPPFNISDWGGERLLEDD-------RWQYGPPPKGNANFAWIQHIIHHLAPR 324

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +VL++  +      SGE EIR+ L+E D ++ +VALP  LF+ T I   LWI
Sbjct: 325 ----GHAGVVLANGSM--SSQTSGEGEIRKRLIEEDRVDCMVALPGQLFYSTQIPVCLWI 378

Query: 410 LSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           LS  K+     +RRG+V  I+A ++   +    + RR  +D+   +I   Y   
Sbjct: 379 LSRDKSANGLRDRRGEVLFIDARNMGHMV---DRVRREFSDEDIERIAGTYRRW 429


>gi|322411067|gb|EFY01975.1| type I restriction-modification system M protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 531

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 114/537 (21%), Positives = 207/537 (38%), Gaps = 69/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MT+   S + L   +W +A+ L      +D+   +L     + L   L        ++  
Sbjct: 1   MTDTNNSRS-LYQALWNSADILRSKMDASDYKSYLLGLIFYKYLSDKLLLAVCDNLDEPF 59

Query: 59  ----------YLAFGGSN---------IDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRN 98
                        F   +         +D   +V   G +F +  SE             
Sbjct: 60  VSFSQAQALYQENFSDEDVHDDLVEVLMDELGYVIEPGLTFSFLVSEIYEGRFQLEALAQ 119

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVM 155
                I   ++  + +FED D  S        ++   +  + K  + ++L        ++
Sbjct: 120 AFRD-IEQSNEAFENLFEDIDLYSKKLGATPQKQNTTVSDVMKELNTLDLTVHA--GDIL 176

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F S+  + A +F TP+ V HL T ++    +           TLYDPT G
Sbjct: 177 GDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFVGRED------KKGMTLYDPTMG 230

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A  +             +   GQE+   T+ +    M++  +        +++
Sbjct: 231 SGSLLLNAKRY-------SNQASTVSYFGQEVITSTYNLARMNMMLHGV-----PIENQH 278

Query: 276 IQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           ++ G TL  D  T +   F   L NPP+  KW      +    ++     FG  L   S 
Sbjct: 279 LRNGDTLDADWPTTEPTDFDGVLMNPPYSMKWSGAAGFL----QDPRFSAFGV-LAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ ++ L
Sbjct: 334 ADFAFLLHGYYHLK----HSGVMAIVLPHGVLFRGAA---EKKIRQHLLEEGAIDTVIGL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D    +IL
Sbjct: 387 PSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFIKNKN----QNNMTDAHIEKIL 439

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
             Y +RE+  KF+ +  +         +  P  +    ++  +   E     ++   
Sbjct: 440 KTYEAREDVDKFAHLASFEEIVENDYNLNIPRYVDTFEEEPVVPLTEIAAQLQETEK 496


>gi|85716902|ref|ZP_01047867.1| type I restriction system adenine methylase [Nitrobacter sp.
           Nb-311A]
 gi|85696282|gb|EAQ34175.1| type I restriction system adenine methylase [Nitrobacter sp.
           Nb-311A]
          Length = 513

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 107/475 (22%), Positives = 197/475 (41%), Gaps = 61/475 (12%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT  +     LA    ++K A+ L G+ + +++  V L    L+ +  A E  R  +   
Sbjct: 1   MTTASNGNGDLAFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEAQRVRLTTD 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI---------ASFSD 109
             A      D E ++  A + F+   E   S L +   R  +   I         A  ++
Sbjct: 61  QYADAE---DPEEYL--AEHVFWVPKEARWSYLQANAKRPEIGKLIDEAMEAIEKAPSNE 115

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
             K +        T+ +     +L ++   FS I +H  T     ++  +YE+ +  F  
Sbjct: 116 GLKGVLPKNYARPTLNK----TMLGELIDLFSNIGMHDSTDKAKDLLGRVYEYFLSGFAG 171

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TPR VV     +L                 +YDP CG+GG    +   + 
Sbjct: 172 SEGKRGGEFFTPRSVVRTLVEMLEPYQG-----------RVYDPCCGSGGMFVQSEKFIE 220

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           + G        +  +GQE+   T  +    + ++ +++D R +         +  +D F 
Sbjct: 221 EHGGRR---DAIAVYGQEINHTTWRLAKMNLAVQGIDADIRWNNEG------SFHRDEFA 271

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +  + L+NPPF       +       +  E  R+  G P  S+ +  +L H+ + L  
Sbjct: 272 DLKADFILANPPFNISDWGGE-------RLSEDQRWKYGTPPKSNANFAWLQHILHHLAP 324

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A +VL++  + + ++G  E +IR+ ++E D+++A+VALP  LFF T I   LW
Sbjct: 325 R----GTAGVVLANGSMSSQQSG--EGDIRKAMIEADVVDAMVALPGQLFFSTQIPACLW 378

Query: 409 ILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +L+  K      +RRG++  I+A  L   +    + RR  + +   +I D Y   
Sbjct: 379 VLARDKGANGHRDRRGEILFIDARKLGFMV---DRVRREFSAEDISRIADAYHRW 430


>gi|308378090|ref|ZP_07668665.1| putative type I restriction-modification system, M subunit
           [Mycobacterium tuberculosis SUMu009]
 gi|308353571|gb|EFP42422.1| putative type I restriction-modification system, M subunit
           [Mycobacterium tuberculosis SUMu009]
          Length = 718

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 192/497 (38%), Gaps = 65/497 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G   
Sbjct: 192 TMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEE 251

Query: 67  IDLESFV----KVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +E  +    +  GY  +     +     + NT+            I    D A     
Sbjct: 252 SQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVM 311

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        +     +M  +YE+ +  F 
Sbjct: 312 KANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFA 371

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L           P     +YDP CG+GG        +
Sbjct: 372 RAEGKRGGEFFTPPSVVKVIVEVL----------EPSSG-RVYDPCCGSGGMFVQTEKFI 420

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H   P  +  +GQE   ET  +    + I  ++     +     +   T ++D  
Sbjct: 421 YE---HDGDPKDVSIYGQESIEETWRMAKMNLAIHGID-----NKGLGARWSDTFARDQH 472

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++N PF  K            +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 473 PDVQMDYVMANLPFNIKDWA---------RNEEDPRWRFGVPPANNANYAWIQHILYKL- 522

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRA +V+++  + +   G  E +IR  ++E DL+  +VALPT LF  T I   L
Sbjct: 523 ---APGGRAGVVMANGSMSSNSNG--EGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCL 577

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           W  +  K        +R G+V  I+A +L   +    +  R + +++  +I D + +   
Sbjct: 578 WFFAKDKAAGKQGSIDRCGQVLFIDARELGDLV---DRAERALTNEEIVRIGDTFHAW-- 632

Query: 462 GKFSRMLDYRTFGYRRI 478
            + S+    +   Y  +
Sbjct: 633 -RGSKSAAVKGIMYEDV 648


>gi|257064463|ref|YP_003144135.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792116|gb|ACV22786.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 503

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 100/523 (19%), Positives = 192/523 (36%), Gaps = 61/523 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +       IW  A+ L G+   +++  V+L    L+ +    E     + ++     G
Sbjct: 8   NTAEIGFEQQIWSAADKLRGNMDASEYKNVVLGLIFLKYISDKFEQRYQELVDE-----G 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFED 117
              + +         F+   E     +             +N    I + +D  K I   
Sbjct: 63  EGFEEDRDEYTYKNIFFVPPEARWGVIAGAAHTPEIGKAIDNAMRLIEAENDKLKNILPK 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +   +      L ++   F+ +++        ++   YE+ + +F     + A +F
Sbjct: 123 ----NFARQELDKRRLGEVVDLFTNVQMAEKGDTRDILGRTYEYCLSKFAEAEGKNAGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     ++                 +YDP CG+GG    +   V +   H    
Sbjct: 179 YTPACVVRTLVEIIEPYRG-----------RVYDPCCGSGGMFVQSAQFVKN---HQGRI 224

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L  +GQE  P T  + +  + IR +++D             T   D+   +RF + L+
Sbjct: 225 DDLSVYGQESNPTTWKMAMMNLAIRGIDAD------LGTFNADTFFNDIHKNERFDFVLA 278

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +          E  R+  G P   + +  ++ H+ + L       GR  
Sbjct: 279 NPPFNMSDWGGEQL-------KEDPRWDFGTPPAGNANFAWMQHMIHHL----ADDGRMG 327

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L      + E  IR+ +++  L+E IVA+P  LF+ T I   LWI+S     +
Sbjct: 328 MVLANGSL--SSQTNNEGAIRQKIVDAGLVEGIVAMPDRLFYSTGIPVSLWIISKESNRQ 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYR 471
           RR     ++A ++ T +    ++ R   D+   ++ + + +   G+      F   +D  
Sbjct: 386 RR--TLFVDAREMGTMV---SRRLREFTDEDIAKVAETFDAFRKGELEDEKGFCAAVDIE 440

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +   +L P R   I D+        +   R    L + F
Sbjct: 441 DIAKQDY-ILTPGRYVGIKDEEDDGEPFEEKMERLTGELAKCF 482


>gi|121609950|ref|YP_997757.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121554590|gb|ABM58739.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 520

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 187/475 (39%), Gaps = 62/475 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T   GS       ++K A+ L G+ + +D+  V L    L+ +    E    ++      
Sbjct: 6   TNKKGSNLGFEAEMFKAADKLRGNMEPSDYKHVALGLIFLKYISDTFEARHKSLLA---- 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-- 119
                   +    +A   F+   +   S L +   +      I +  D+A    E  +  
Sbjct: 62  -DNPQDVEDRDAYLADNVFWVPKDARWSHLQAHAKQ----PTIGTLIDDAMRAIEKDNAT 116

Query: 120 FSSTIARLE-----KAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
             S + +          +L ++    SGI L+ +      ++  +YE+ + +F     + 
Sbjct: 117 LQSVLPKDYARPALNKVMLGELIDLISGITLNQEGHASRDILGRVYEYFLGQFAGAEGKR 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   V + G  
Sbjct: 177 GGEFYTPGSVVRTLVEMLEPYQG-----------RIYDPCCGSGGMFVQSEKFVQEHGGR 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R ++SD R +         +  KD     +  
Sbjct: 226 IG---DIAIYGQESNHVTWRLAKMNLAVRGIDSDIRWNNEG------SFHKDELRDLKAD 276

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               +  E  R+  G+P + + +  +L H+ + L       
Sbjct: 277 YILANPPFNISDWGG-------DRLREDVRWKFGVPPVGNANYAWLQHIVHHL----APN 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A +VL++  + + ++G  E +IRR ++E D+++ +VALP  LF+ T I   LW L+  
Sbjct: 326 GTAGVVLANGSMSSSQSG--EGDIRREMVEQDIVDCMVALPGQLFYSTQIPACLWFLARD 383

Query: 414 KT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           K+          +RR +V  I+A  L   +    + RR + D   R+I   Y + 
Sbjct: 384 KSNGRAGKAYLRDRRKEVLFIDARKLGVLV---DRTRRELTDADVRRIAGTYHAW 435


>gi|94263483|ref|ZP_01287295.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93456121|gb|EAT06264.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 517

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 194/542 (35%), Gaps = 74/542 (13%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE T + A+L   N +W  A+ + G     ++  V+L    L+ +  A +     +   
Sbjct: 1   MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDELEAT 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNA 111
                    D + +   A   F+   E     + +   +       +     +   + + 
Sbjct: 61  RDTEYTDPEDRDEYA--AANIFWVPKEARWDKVQAEAPQPTIGKAIDEAMVALERENPSL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
           K +         + +     L     K    I+L          +  +YE+ + +F +  
Sbjct: 119 KGVLPKDYSRPALDKTRLGEL----VKTVGDIDLQARQSGVQDPLGRVYEYFLGKFAAAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP+ VV L   ++           P     ++DP CG+GG    +   V   
Sbjct: 175 GKSGGEFYTPQCVVQLLVEMI----------EPYKG-RVFDPCCGSGGMFVQSERFVEAR 223

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IR +++D                 DL    
Sbjct: 224 GGRLG---DIAVYGQESNPTTWKLAKMNLAIRGIDAD------LGPHHADCFHNDLHKDL 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF           +         R+  G P  ++ +  ++ H  + L    
Sbjct: 275 KADYILANPPFNMSDWGSDRLRDDV-------RWKYGTPPANNANYAWIQHFIHHL---- 323

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G A  V+++  +    + S E  IR+ +++ D+I+ +VALP  LF+ T I   LW +
Sbjct: 324 APDGIAGFVMANGSMST--STSSEGAIRQAMIDQDMIDCMVALPGQLFYTTQIPVCLWFV 381

Query: 411 SNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461
           +  K         +R G+   I+A  L + I    +  R ++    + I  +Y +   ++
Sbjct: 382 TRSKKADPKRGLRDRSGETLFIDARRLGSLI---DRVHRELSTADIKTITGVYHNWRNQD 438

Query: 462 GKF---------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           G +         + + + +  GY    VL P R     D         +      + L +
Sbjct: 439 GDYEDKAGWWKSAALAEIQGHGY----VLTPGRYVGAEDVEDDGIPFEEKMTELSARLFE 494

Query: 513 SF 514
            F
Sbjct: 495 QF 496


>gi|323935282|gb|EGB31635.1| N-6 DNA methylase [Escherichia coli E1520]
          Length = 539

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 189/466 (40%), Gaps = 55/466 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W  A  L G  + +++  V+L    L+ +    E  R  +     A     +++E
Sbjct: 15  FEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQA---DFLEME 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
            F +     FY   E   S +     ++++        S I   +   K    D  FS  
Sbjct: 72  VFYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQ 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L     N   +    D      + ++  +YE+ + +F +   +G  +F TP
Sbjct: 131 NLETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L T +L                 +YDP CG+ G    ++  V    SH      +
Sbjct: 191 KCVVTLLTEMLEPFQG-----------KIYDPCCGSAGMFVQSVKFVE---SHQGKSRDI 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+ +    + IR L +      +   +  +T   D     +  Y L+NPP
Sbjct: 237 ALYGQELTATTYKLAKMNLAIRGLSA------NLGERPANTFFSDQHPDLKADYILANPP 290

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K  +++  + ++ +       G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 291 FNLKDWRNEAELTEDPRFA-----GYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K      
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              +R+G+   I+A +L T I    +  + +  +    I D Y + 
Sbjct: 400 GYRDRQGETLFIDARNLGTMI---SRTTKELTAEDIATIADTYHAW 442


>gi|229819004|ref|YP_002880530.1| type I restriction-modification system, M subunit [Beutenbergia
           cavernae DSM 12333]
 gi|229564917|gb|ACQ78768.1| type I restriction-modification system, M subunit [Beutenbergia
           cavernae DSM 12333]
          Length = 524

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 114/536 (21%), Positives = 204/536 (38%), Gaps = 73/536 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                 A L   IW+ A DL G     DF   +L F   R +   L    +A      + 
Sbjct: 2   NRETQRAELHKTIWRIANDLRGSVDGWDFKAYVLGFLFYRYISEDLTAYLNAGERDAGST 61

Query: 63  GGS----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105
                        + ++ + +      F   SE   +         NL   +        
Sbjct: 62  DFEYVTAPNSVVADHEVVAGIVAEKGFFIRPSELFANVRARAARDPNLNETLERVFRTIE 121

Query: 106 ------SFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD---R 153
                    D+ K +F+D D +S        ++   L ++      + L   T  +    
Sbjct: 122 SSAVGTEAEDDLKGLFDDVDVNSNKLGPTVAKRNEKLVRLLDAIGDLNLGNGTFSENKID 181

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L++ + S   +   ++ TP++V  L   + +    ++ K        +YDP 
Sbjct: 182 AFGDAYEYLMQMYASAAGKSGGEYYTPQEVSELLARITVVGKTSVNK--------VYDPA 233

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +   G            GQE+   T+ +C   M +  +  +      
Sbjct: 234 CGSGSLLLKFRKVLGKGGVRQG------YFGQEINLTTYNLCRINMFLHDVGFE-----H 282

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL   +    + F   +SNPP+  KW  D + +          RF P   L  
Sbjct: 283 FDIAHGDTLIDPMHWDDEPFEAIVSNPPYSIKWAGDANPLLIND-----PRFAPAGVLAP 337

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A+
Sbjct: 338 KSKADLAFTMHMLSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRKYLIDNNFVDAV 390

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   K +     V  I+A+  +    N+ K    + +  ++
Sbjct: 391 IQLPPDLFFGTAIATCIIVLKKSKAD---NGVLFIDASAQFVRGGNKNK----LTEANQQ 443

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +ILD + +R++    ++++D          I V   +      +   +  L A I 
Sbjct: 444 RILDAFTTRDDVVHVAKLVDNEAISENGYNISVSSWVEAEDTREVVDITELNARIA 499


>gi|94991200|ref|YP_599300.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10270]
 gi|94544708|gb|ABF34756.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10270]
          Length = 526

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 124/564 (21%), Positives = 210/564 (37%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+   ++  +    V G   Y      +   L      N         
Sbjct: 58  NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + DD  ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDDHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|300070273|gb|ADJ59673.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 539

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 215/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A  L   +W +A+ L G    +++   +L     + L  A                P RS
Sbjct: 2   ATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-- 109
                ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 62  TQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 110 ----NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                   +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRAPFH------IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++ +    H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLINPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +  +    K++      +   L
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVAVNTNLLKINEELVQQEQVLL 502

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        ES
Sbjct: 503 SLINDFSESEENQALIES 520


>gi|125623518|ref|YP_001032001.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124492326|emb|CAL97260.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis
           subsp. cremoris MG1363]
          Length = 545

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 113/565 (20%), Positives = 216/565 (38%), Gaps = 70/565 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M      A  L   +W +A+ L G    +++   +L     + L  A             
Sbjct: 1   MERRIIMATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKT 60

Query: 50  ---PTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              P RS     ++ +   + D  +E+     GY       +    + + N   NL    
Sbjct: 61  DTFPERSTQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHYRIKADNYEFNLTDLQ 120

Query: 105 ASFSD------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           A F++          +F D D +ST       ++   + ++ +    I+L        V+
Sbjct: 121 AGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVI 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  F +   + A +F TP+ V  + + +     ++           +YDP  G
Sbjct: 179 GDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRAPFH------IYDPAMG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  + +   ++ +    H        HGQEL   T  +    +++  ++ +       N
Sbjct: 233 SGSLMLNIRRYLINPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMN 280

Query: 276 IQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S 
Sbjct: 281 LNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSK 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ L
Sbjct: 336 ADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGL 388

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+
Sbjct: 389 PANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIV 441

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-- 510
             Y  RE+  +++ +  +         +  P  +    ++  +  +  +    K++    
Sbjct: 442 STYKKREDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVAVNTNLLKINEELV 501

Query: 511 -HQSFWLDILKPMMQQIYPYGWAES 534
             +   L ++    +        ES
Sbjct: 502 QQEQVLLSLINDFSESEENQALIES 526


>gi|300173281|ref|YP_003772447.1| type I restriction-modification system subunit M [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887660|emb|CBL91628.1| type I restriction-modification system, M subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 531

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 120/570 (21%), Positives = 218/570 (38%), Gaps = 68/570 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVRE----- 57
           A SL   +W  A+ L G    +++   +L     + L         E      ++     
Sbjct: 2   ATSLEQQLWAAADILRGKMDASEYKNYLLGLVFYKYLSDAELREVYEQENGQTKDFPDRS 61

Query: 58  -----KYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
                    F     +L   ++   GY    T  +      +     NL    A F+   
Sbjct: 62  VQFQTLTEWFKDDAEELTEIIQLQKGYFIQPTQLFYTYRQQADRYEFNLTDLQAGFNELE 121

Query: 109 ---DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              D  K +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEH--DGDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  + + +     +            +YDPT G+G  + +
Sbjct: 180 IGQFAAGAGKKAGEFYTPQAVSRIISEITSIGQEDRTPFH------IYDPTMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++++       P  +  HGQEL   T+ +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLSN-------PKQIHYHGQELNTTTYNLARMNLILHGVDQE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  T +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DSDWPTEEPYQFDAVVMNPPYSAKWS----AADKFLSDQRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F+ 
Sbjct: 337 HGFYHLK----DTGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFYG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   +       V  I+A+  +   +N    + I+      +I+  Y  RE
Sbjct: 390 TSIPTTVIILKKHRATR---DVLFIDASSDFDKQKN----QNILLPAHIEKIVKAYKQRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +  K+S +  +         +  P  +    ++  +  ++      K+         D+L
Sbjct: 443 DADKYSHVASFEEIKENDFNLNIPRYVDTFEEEEPVNLVKVSNEIAKIENELSKNQSDLL 502

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
             MM QI     +E  ++ + K       +
Sbjct: 503 D-MMNQITVTKESEEIIEATKKILAGGQHE 531


>gi|260187773|ref|ZP_05765247.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis CPHL_A]
 gi|289448412|ref|ZP_06438156.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CPHL_A]
 gi|289421370|gb|EFD18571.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CPHL_A]
          Length = 540

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 193/497 (38%), Gaps = 65/497 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G   
Sbjct: 14  TMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEE 73

Query: 67  IDLESFV----KVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +E  +    +  GY  +     +     + NT+            I    D A     
Sbjct: 74  SQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVM 133

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        +     +M  +YE+ +  F 
Sbjct: 134 KANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFA 193

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L                 +YDP CG+GG        +
Sbjct: 194 RAEGKRGGEFFTPPSVVKVIVEVLEP-----------SSGRVYDPCCGSGGMFVQTEKFI 242

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H   P  +  +GQE   ET  +    + I  ++     +     +   T ++D  
Sbjct: 243 YE---HDGDPKDVSIYGQESIEETWRMAKMNLAIHGID-----NKGLGARWSDTFARDQH 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++NPPF  K            +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 295 PDVQMDYVMANPPFNIKDWA---------RNEEDPRWRFGVPPANNANYAWIQHILYKL- 344

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRA +V+++  + +   G  E +IR  ++E DL+  +VALPT LF  T I   L
Sbjct: 345 ---APGGRAGVVMANGSMSSNSNG--EGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCL 399

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           W  +  K        +R G+V  I+A +L   +    + +R + +++  +I D + +   
Sbjct: 400 WFFAKDKAAGKQGSIDRCGQVLFIDARELGDLV---DRAKRALTNEEIVRIGDTFHAW-- 454

Query: 462 GKFSRMLDYRTFGYRRI 478
            + S+    +   Y  +
Sbjct: 455 -RGSKSAAVKGIMYEDV 470


>gi|291562471|emb|CBL41287.1| type I restriction system adenine methylase (hsdM)
           [butyrate-producing bacterium SS3/4]
          Length = 523

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 126/560 (22%), Positives = 211/560 (37%), Gaps = 73/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           T+       L   IW  A++L G     DF   +L     R +   L         +   
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYVNSGEIDAGN 63

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105
           +      +A   +    E  V+  G+ F   SE   +   +     NL   +        
Sbjct: 64  TDFDFAKMADENAEEAREGLVEEKGF-FILPSELFCNVRSNAADDENLNETLERVFRHIE 122

Query: 106 ------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VM 155
                     +   +F+D+D +S       A    K+ K  +G+ E+    V D      
Sbjct: 123 ESAKGSEAESDFAGLFDDYDVNSNKLGSTVAKRNEKLVKLLNGVGEMKLGDVKDHSIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG
Sbjct: 183 GDAYEYLMMMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A   +      +        +GQE+   T+ +C   M +  +  D       N
Sbjct: 235 SGSLLLKAEKVLGKDAIRNG------FYGQEINITTYNLCRINMFLHDVGFDK-----FN 283

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I    TL        + F   +SNPP+  KW  D++ +          RF P   L   S
Sbjct: 284 IACEDTLISPQHWDDEPFELIVSNPPYSIKWAGDENPLLIND-----PRFAPAGVLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              M F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ 
Sbjct: 339 KADMAFIMHSLSWL----ASNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCIIQ 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP++LFF T+IAT + ++   K +    K   I+AT+    + N       +  +    I
Sbjct: 392 LPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATNECVKVTN----NNKLTPEHIEHI 444

Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +D +  RE  K F+ +  Y           V   + +    +K  + +L A+I  +++  
Sbjct: 445 VDAFTKREEVKHFAHLASYEEVSSNDYNLSVSTYVEVEDTREKIDIVKLNAEI--KEIVA 502

Query: 510 LHQSFWLDILKPMMQQIYPY 529
             Q    +I K +      Y
Sbjct: 503 REQVLRDEIDKIIADIEVGY 522


>gi|121610070|ref|YP_997877.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121554710|gb|ABM58859.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 518

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 103/490 (21%), Positives = 203/490 (41%), Gaps = 68/490 (13%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   +  +L     ++K A+ L G+ + +D+  V L    L+ +  A E   + +  +
Sbjct: 1   MAQNDNNGGNLGFEAELFKTADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAQLLAE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNA 111
             A      +      +A   F+   E   S L +   +       ++    I   +++ 
Sbjct: 61  DAAAAEDKDEY-----LADNIFWVPREARWSHLQANAKQSSIGTLIDDAMRAIERDNESL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         + ++    +L ++    SGI L+  +     V+  +YE+ + +F    
Sbjct: 116 KGVLPKDYARPALNKV----MLGELIDLISGIALNEGNDKSKDVLGRVYEYFLGQFAGAE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TPR VV     +L           P     +YDP CG+GG    +   VA+ 
Sbjct: 172 GKRGGEFYTPRSVVRTLVEML----------EPYTG-RVYDPCCGSGGMFVQSEKFVAEH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE    T  +    + +R ++SD + +         +  KD     
Sbjct: 221 GGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIKWNNEG------SFHKDELRDL 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + L+NPPF               +  E  R+  G P   + +  +L H+ + L    
Sbjct: 272 KADFILANPPFNISDWGGG-------RLREDVRWAFGAPPAGNANYAWLQHIFHHL---- 320

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G A +VL++  + + ++G  E +IR+ ++E ++++ +VALP  LF+ T I   LWIL
Sbjct: 321 SPHGFAGVVLANGSMSSQQSG--EGDIRKAMIEANVVDCMVALPGQLFYSTQIPACLWIL 378

Query: 411 SNR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-- 459
           S           K  +RRG+V  I+A  +   +    + RR + +++  +I   Y +   
Sbjct: 379 SKDRSNGLVKKTKLRDRRGEVLFIDARKMGVLV---DRTRRELTNEEIGRIAATYHAWRG 435

Query: 460 --ENGKFSRM 467
             + G++S +
Sbjct: 436 EADAGEYSDI 445


>gi|309750368|gb|ADO80352.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae
           R2866]
          Length = 514

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 114/530 (21%), Positives = 202/530 (38%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MVAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESIN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +G GRAAIV      +   A   E +IR++L++N+ ++A++AL  +
Sbjct: 337 AFILHALSYL----SGKGRAAIVSFPGIFYRSGA---EQKIRQYLVDNNYVDAVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+   F++ + +           V   +      +   +  L A I 
Sbjct: 443 ADKEDVPHFAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|254448602|ref|ZP_05062061.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
 gi|198261791|gb|EDY86077.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
          Length = 499

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 119/520 (22%), Positives = 210/520 (40%), Gaps = 53/520 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +       +W  A  + G    +D+   I P    +R+    +       E+      + 
Sbjct: 5   NIKDFEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFIDAMEQVGDEELAK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D+   +++     +         +G      +    I   +     IF D  +++   R
Sbjct: 65  GDMFHRIQIPQECHWKDVFSETKDIGQA--LKDAFRGIELANPKLHGIFGDASWTNK-DR 121

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR +V L
Sbjct: 122 LSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDP CGTGG L + ++HV + G     P +L   GQE
Sbjct: 181 MVNIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302
               T A+    + +   E         +I +G TL +  F      + F   ++NPPF 
Sbjct: 228 KNLTTEAIARMNLFLHGQED-------FDIVRGDTLREPKFLVNDRLETFDCVIANPPFS 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K                 GR   GL   ++G   ++ H+   L    N  GR A+VL  
Sbjct: 281 LKEWGHAL-----WSADPYGRKQYGLAPKTNGDFAWVQHMFASL----NEQGRMAVVLPH 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E  IR  LL+ + IEAI+ + ++LF+ T I   + +L   +  + +  V
Sbjct: 332 GVLFRGGA---EGAIRTKLLQENCIEAIIGVASNLFYGTGIPACILVLRKSRPADHQDHV 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--------VSRENGKFSRMLDYRTFG 474
            +INA +++T  R     +  +++DQ  +I +IY         + E    +R +      
Sbjct: 389 LIINAEEIFTKGRA----QNTLSNDQADEIFNIYRQQETLGPKAEEIEGVARWVALTEIE 444

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITW-RKLSPLHQS 513
                +     +   L++  +   EA   + +KL+ L ++
Sbjct: 445 ENDFNLNIARYVQKPLEEETITVEEALKDFQQKLAALERA 484


>gi|255322118|ref|ZP_05363265.1| type I restriction-modification system, M subunit [Campylobacter
           showae RM3277]
 gi|255300816|gb|EET80086.1| type I restriction-modification system, M subunit [Campylobacter
           showae RM3277]
          Length = 496

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/539 (20%), Positives = 211/539 (39%), Gaps = 65/539 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +  ++ N +WK  +   G    +D+   +L    ++ L    +     +R +Y   G
Sbjct: 2   QKTTQETINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLEQLRAEY---G 58

Query: 64  GSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNNLESYIASFSDNAK----AIFED 117
                +E+ +K   +      T EY L+   + N    +   +    ++ K     IF  
Sbjct: 59  DKTERIEAKLKKEKFKLDESCTFEYLLAHKEAVNLGEIMNKTLEKIEEDNKDKLEGIFRS 118

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171
            DF++        E+  +L  + ++F+   ++L P  +  + ++ + YE+LI  F S+  
Sbjct: 119 IDFNNKNKLGDTKERNAILQNLLEDFNDSRLDLRPSMLEGNDIIGDAYEYLIAHFASDAG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +V  L   L+           P     +YDPTCG+G  L  A   V    
Sbjct: 179 KKGGEFYTPSEVSTLLAKLV----------EPKDGDMIYDPTCGSGSLLIKASKEVGSKN 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
                      +GQE   +THA+C   M +  +           I+ G T+   L     
Sbjct: 229 --------FRLYGQEKNGQTHALCKMNMFLHEIND-------AVIEWGDTIRNPLHLHDN 273

Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKL 346
             K F   ++NPPF                N    RF    LP  S G   F++H+   L
Sbjct: 274 LIKTFDIVVANPPFSLDKWGA-----DFAGNDPFMRFSSYALPPKSKGDYAFVVHMIKSL 328

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G+  +VL    LF G +   E +IR+ L+E +L++A++ LP +LF+ T+I   
Sbjct: 329 ----NKNGKMGVVLPHGVLFRGSS---EGKIRQKLIEENLLDAVIGLPANLFYGTSIPAC 381

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFS 465
           + +    ++ E    V  I+A+  +   +N    +  +      +I+ +Y +R E  K+S
Sbjct: 382 ILVFKKNRSNE---DVLFIDASKEFEKGKN----QNSLTAQNIDKIVSVYKNRSEIEKYS 434

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +            +  P  +    ++  +          +L    +S    + + + +
Sbjct: 435 HLASLSEIKENDYNLNIPRYVDTFEEEEAVDIEATKAEISRLEAELKSVQGKMSEYLAE 493


>gi|121595901|ref|YP_987797.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607981|gb|ABM43721.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 508

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 114/492 (23%), Positives = 203/492 (41%), Gaps = 52/492 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +++W  A  L G     D+ + I P    +R+    +    A     LA    +
Sbjct: 9   SQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQA----ALANSKGD 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSS 122
           +    F +   +     + ++       N    ++  + +      D    IF D  +++
Sbjct: 65  LSYAQFAENHRFQIPQGAHWNDVRQAPKNVGAAIQKAMRAIETANPDLLDGIFGDAPWTN 124

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    L   + ++FS   L    VP+  + N YE+LI++F  +    A +F T R 
Sbjct: 125 R-ERLPDETLK-NLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRT 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L  
Sbjct: 183 VVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGGEYRT---LKL 229

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE    T ++    + +  +E          I +G TL++         ++F   L+N
Sbjct: 230 YGQERNLITSSIARMNLFLHGVED-------FEIIRGDTLAEPKHIEGDRLRQFDVILAN 282

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+  K    +        + + GR   G P        F  H+   L       GR+A+
Sbjct: 283 PPYSIKQWNREA-----WSSDKWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRSAV 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT  R
Sbjct: 334 LWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKTAAR 389

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
           +GKV  I+A +  T  R +      +  + +++IL  Y +  +   F+++      G   
Sbjct: 390 KGKVIFIDAVNEVTRERAQS----FLKPEHQQRILTAYKTFADVPGFAKVATLAEIGANA 445

Query: 478 IKVLRPLRMSFI 489
             +  PL +  I
Sbjct: 446 GNLSIPLYVKRI 457


>gi|322513993|ref|ZP_08067068.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322120219|gb|EFX92177.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 533

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 119/525 (22%), Positives = 200/525 (38%), Gaps = 65/525 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61
              A L   IW+ A D+ G     DF + +L     R +        E    +V    L 
Sbjct: 25  QQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVNYAKLP 84

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
                 ++++        F   S+   + + + NT  NL S +                 
Sbjct: 85  DEIITPEIKTDAIKTKGYFIYPSQLFKNVVATANTNPNLNSELKQIFSDIENSATGYPSE 144

Query: 109 DNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
            + K +F DFD +S        +K   L  + K  + ++    +     +  + YE LI 
Sbjct: 145 QDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGDAYEFLIS 204

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G  L  A 
Sbjct: 205 NYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGSLLLQAK 256

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              GQE+   T+ +    M +  +  D       +I  G+TL  
Sbjct: 257 KQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALGNTLMN 305

Query: 285 DLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F   K F   +SNPP+  KW    D      +     RF P   L   S     F++H
Sbjct: 306 PQFGDDKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGVLAPKSKADFAFILH 360

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  +LFF T
Sbjct: 361 ALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALAPNLFFGT 413

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++  +E+
Sbjct: 414 SIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLFADKED 466

Query: 462 -GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
               ++++             V   +      +   +  L A I 
Sbjct: 467 VPHLAKLVPIEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 511


>gi|300775817|ref|ZP_07085678.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300505844|gb|EFK36981.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 516

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/542 (19%), Positives = 213/542 (39%), Gaps = 74/542 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-Y 59
           M+E       L   +W  A  L G     +F   IL F   + L   +E   +++ E+  
Sbjct: 1   MSEEQKKI--LEQQLWNIANTLRGKMNADEFRDYILGFIFYKYLAEKMEIYANSILEEDQ 58

Query: 60  LAFGGSNIDL-----------ESFVKVAGYSFYNTSEYS--LSTLGSTNTRNNLESYIAS 106
           + F     D            E  ++  GY    +  +S       +     +L+  + +
Sbjct: 59  IQFRDIKEDTPKGLEYIEAIREEALETLGYFLKPSELFSEITKRGDNNFILEDLQKILTN 118

Query: 107 F---------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRV 154
                      ++ + +F D D +S         +  L+ K+ K+   I+   +     V
Sbjct: 119 IQLSTMGTQSEEDFEDLFSDMDLNSNNLGRTADARNTLIVKVLKHLDEIDFKLNDTELDV 178

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F S   + A +F TP++V  +   ++    + L        +++YDPTC
Sbjct: 179 LGDAYEYLIGQFASGAGKKAGEFYTPQEVSKILAKIVTTGKNRL--------KSVYDPTC 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V D  +          +GQE+   T+ +    M++  +          
Sbjct: 231 GSGSLLLRVAREVKDVNN---------FYGQEMNRTTYNLARMNMILHGVHY-----RQF 276

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +I+Q  TL          F   ++NPPF  KW  +   +  + +  + G+  P     S 
Sbjct: 277 DIKQEDTLEHPQHLNDMPFEAIVANPPFSAKWSANPLFLNDD-RFSQYGKLAP----SSK 331

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
               F+ H+   L       G  AIVL    LF G A   E  IR++L+E  + ++A++ 
Sbjct: 332 ADFAFVQHMIYHL----AENGTMAIVLPHGVLFRGAA---ELHIRKYLIEQKNYLDAVIG 384

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T + +    K  E    +  I+A+  +  ++N    + ++ ++   +I
Sbjct: 385 LPANIFYGTSIPTCILVFKKCK--EDPDHILFIDASKEFEKVKN----QNMLREEHIDKI 438

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           ++ Y +R    K+S +   +        +  P    ++        ++     +++  L 
Sbjct: 439 VETYRNRTTIEKYSHLATLKEVEENDYNLNIP---RYVDTFEAEEEIDIQAVMQEIKSLE 495

Query: 512 QS 513
             
Sbjct: 496 AK 497


>gi|160902533|ref|YP_001568114.1| type I restriction-modification system, M subunit [Petrotoga
           mobilis SJ95]
 gi|160360177|gb|ABX31791.1| type I restriction-modification system, M subunit [Petrotoga
           mobilis SJ95]
          Length = 815

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 118/601 (19%), Positives = 237/601 (39%), Gaps = 58/601 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++K A+ L G+   +++ + I     L+R     E ++  +R K+ 
Sbjct: 1   MNNGKITIRQLETHLFKAADILRGNMDASEYKEYIFGMLFLKRASDVFEVSKEKLRNKFK 60

Query: 61  AFGGSNIDLESFVKVAG---YSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
           A   ++  +   ++       +F+   +     +        N  N   + +   +    
Sbjct: 61  AQSFTDEQINELLEDPDLYWDTFFVPEKARWRNILTLKEDVGNHLNKALAALEEANRELD 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            + +  DF++   +   K+  L  +  +F+   L  +      ++   YE+L++ F    
Sbjct: 121 GVLKYIDFNAIKGKTRLKSQQLIDLIHHFNKYRLTNEDFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    T+YDPT G+GGFL ++ +++ + 
Sbjct: 181 GKKGGEFYTPTYVKKLMVRLV----------KPQEGMTIYDPTVGSGGFLIESRHYIEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G     P  +  +GQEL   T ++C   M++  +          +I+   TL+  +F   
Sbjct: 231 GQD---PINIALYGQELNGLTWSICKMNMILHGISD-------AHIENEDTLTTPMFVEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + F   L+NPPF + + +         +  E  ++G          ++FL H+   L
Sbjct: 281 GYIRHFDRVLANPPFSQNYTRT------NMQFQERFKYGFTPETGKKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G  A V+    LF G     E  IR  ++ ++LIEAI+ LP+ LF+   I   
Sbjct: 335 ----NDNGVMATVMPHGVLFRGGQ---EKVIREGIVRDNLIEAIIGLPSKLFYNVGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +++  K E  + K+  INA   +   RN    +  +  +   +I+ ++  +++  K+S
Sbjct: 388 VIVINKNKPEHMKDKILFINADREYGEGRN----QNYLRPEDIEKIVTVFDEKKDIPKYS 443

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLS---PLHQSFWLDIL 519
           R++D          + + R L  S   +   + A L   +  R++     L QSF L + 
Sbjct: 444 RIVDIMEIEDNDFNLNIRRYLDNSPDPEIEDVHAHLVCGVPKREVELYKELFQSFDLSLN 503

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           + + ++   Y      ++E  K  E          +            D     +   +G
Sbjct: 504 RLLKEKDKNYLEFNDNIEEKSKLREIIESDDNVRVTISKHREKLQEWWDKVTPEIERFHG 563

Query: 580 E 580
            
Sbjct: 564 N 564


>gi|2689699|gb|AAB91416.1| modification subunit [Lactococcus lactis subsp. lactis bv.
           diacetylactis]
          Length = 531

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 109/531 (20%), Positives = 207/531 (38%), Gaps = 67/531 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A  L   +W +A+ L G    +++   +L     + L  A                P RS
Sbjct: 2   ATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-- 109
                ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 62  TQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 110 ----NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                   +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F     + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 180 IGMFAEGAGKKAGEFYTPQAVSRIMSEITSIGQESRAPFH------IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++ +    H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLLNPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +  +++ +  +         +  P  +    ++  +  +  +    K++  
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVAVNTNLLKINEE 493


>gi|257452048|ref|ZP_05617347.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|257466153|ref|ZP_05630464.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917310|ref|ZP_07913550.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058596|ref|ZP_07923081.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R]
 gi|313684272|gb|EFS21107.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R]
 gi|313691185|gb|EFS28020.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 502

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 109/528 (20%), Positives = 202/528 (38%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + +         IW  A  LWG     D+ KVI+    LR +  + E     + E+  
Sbjct: 1   MAKKSNVKIGFEKEIWDAACVLWGHIPAADYRKVIVGLIFLRYISSSFEKKYKELLEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    +    F+   E   ST+ +           +N    I + +   K 
Sbjct: 59  ---GYGFEDDRDAYMEDNIFFVPKEARWSTISAATHTAEIGMVIDNAMRAIEAENKTLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + I +        ++   YE+ I +F +    
Sbjct: 116 VLPKIYASPDLDK----RVLGEVVDLFTNNINMEDTEESKDLLGRTYEYCIAQFAAYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V     +L   D+            +YDP CG+GG    ++  +    +
Sbjct: 172 KGGEFYTPSSIVKTIVEILKPFDNC----------RVYDPCCGSGGMFVQSVKFLQ---A 218

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +   GQE   +T  +    M IR +++      +    Q  T   DL +  + 
Sbjct: 219 HSGNRNHISVFGQESNADTWKMAKMNMAIRGIDA------NFGPYQADTFFNDLHSTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF           +         R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGQDKLQDDV-------RWKYGLPPAGNANYAWIQHMVHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE  IR+ ++E+DLIE IVA+PT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALST--QTSGEGNIRKAIIEDDLIEGIVAMPTQLFYSVTIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A ++   +    +K R   ++  +++ + +   + G       F  
Sbjct: 380 NK--KQKGKTLFIDARNMGFMV---DRKHRDFTEEDIQKLANTFTHFQEGILEDEKGFCA 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +++      +   +L P R   I D         +   R  S L   F
Sbjct: 435 VVETEEIRKQDY-ILTPGRYVGIADPEDDGEPFEEKMTRLTSELSDMF 481


>gi|237747137|ref|ZP_04577617.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes
           HOxBLS]
 gi|229378488|gb|EEO28579.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes
           HOxBLS]
          Length = 526

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/536 (19%), Positives = 208/536 (38%), Gaps = 75/536 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L   +W  A  L G     +F   IL F   + L   +E   +   E   
Sbjct: 1   MSEEQKRL--LQQQLWNIANTLRGKMNADEFRDYILGFIFYKYLSEKVETYANKALEPDN 58

Query: 58  -KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
             +     +  + ++++             F   SE         N + +    +     
Sbjct: 59  KVFAELDETKPEDKAYIDAIREEAVEDIGYFLKPSELFHVIAQKGNKKTDNYILVDLIGI 118

Query: 109 --------------DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVP 151
                         D+   +FED D +S+    +  +K  L+ ++  +   I+       
Sbjct: 119 LKNIEQSTMGHDSADDFINLFEDIDLTSSKLGRSNTDKNALIARVLAHLDAIDFDLSNTE 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+ + YE+LI  F S   + A +F TP+ V  L   L+      L        R +YD
Sbjct: 179 TDVLGDAYEYLIGEFASGAGKKAGEFYTPQPVSTLLAKLVTCHRKKL--------RNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L          G           +GQEL   T+ +    M++  +       
Sbjct: 231 PTCGSGSLLLRVKREAESVGR---------IYGQELNRTTYNLARMNMILHDVHYS---- 277

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +I+Q  TL +      RF   ++NPPF  +W  +   +  E +    G+  P     
Sbjct: 278 -DFDIRQEDTLERPQHRDLRFDAIVANPPFSAQWSANPLFMNDE-RFSVYGKLAPA---- 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S   + F+ H+  +L    +  G  A+V+    LF G +   E+ IRR ++E  + ++A+
Sbjct: 332 SKADLAFVEHMIYQL----SEEGTMAVVMPHGVLFRGSS---EAHIRRHIIEKMNYLDAV 384

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + +L  +K  +    +  I+A+  +  +    K +  +  +   
Sbjct: 385 IGLPSNIFYGTSIPTCILVL--KKCRKHPDNILFIDASQHFEKV----KTQNFLRSEDIE 438

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +I++ Y  R+N  KF+ +   +        + + R +      ++  +A +  ++ 
Sbjct: 439 RIVNAYAERKNIDKFAHVATLKEIEENDYNLNIPRYVDTFEKEEEIDIAAVAKELA 494


>gi|15842294|ref|NP_337331.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31793930|ref|NP_856423.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium bovis AF2122/97]
 gi|121638634|ref|YP_978858.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215404725|ref|ZP_03416906.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|215412570|ref|ZP_03421298.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428188|ref|ZP_03426107.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|215431697|ref|ZP_03429616.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis EAS054]
 gi|215447008|ref|ZP_03433760.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T85]
 gi|219558766|ref|ZP_03537842.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|224991126|ref|YP_002645815.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254232854|ref|ZP_04926181.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis C]
 gi|254365407|ref|ZP_04981452.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260201885|ref|ZP_05769376.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis T46]
 gi|289444300|ref|ZP_06434044.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T46]
 gi|289570935|ref|ZP_06451162.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|289746559|ref|ZP_06505937.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|289751413|ref|ZP_06510791.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|289754861|ref|ZP_06514239.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis EAS054]
 gi|289758883|ref|ZP_06518261.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis T85]
 gi|294994150|ref|ZP_06799841.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis 210]
 gi|298526223|ref|ZP_07013632.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|13882588|gb|AAK47145.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31619524|emb|CAD94962.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM
           (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494282|emb|CAL72760.1| Possible type I restriction/modification system dna methylase hsdM
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601913|gb|EAY60923.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis C]
 gi|134150920|gb|EBA42965.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis str. Haarlem]
 gi|224774241|dbj|BAH27047.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417219|gb|EFD14459.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T46]
 gi|289544689|gb|EFD48337.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|289687087|gb|EFD54575.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|289692000|gb|EFD59429.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|289695448|gb|EFD62877.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis EAS054]
 gi|289714447|gb|EFD78459.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis T85]
 gi|298496017|gb|EFI31311.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|323718603|gb|EGB27767.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904371|gb|EGE51304.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis W-148]
          Length = 540

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 105/497 (21%), Positives = 192/497 (38%), Gaps = 65/497 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G   
Sbjct: 14  TMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEE 73

Query: 67  IDLESFV----KVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +E  +    +  GY  +     +     + NT+            I    D A     
Sbjct: 74  SQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVM 133

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        +     +M  +YE+ +  F 
Sbjct: 134 KANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFA 193

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L                 +YDP CG+GG        +
Sbjct: 194 RAEGKRGGEFFTPPSVVKVIVEVLEP-----------SSGRVYDPCCGSGGMFVQTEKFI 242

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H   P  +  +GQE   ET  +    + I  ++     +     +   T ++D  
Sbjct: 243 YE---HDGDPKDVSIYGQESIEETWRMAKMNLAIHGID-----NKGLGARWSDTFARDQH 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++NPPF  K            +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 295 PDVQMDYVMANPPFNIKDWA---------RNEEDPRWRFGVPPANNANYAWIQHILYKL- 344

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRA +V+++  + +   G  E +IR  ++E DL+  +VALPT LF  T I   L
Sbjct: 345 ---APGGRAGVVMANGSMSSNSNG--EGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCL 399

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           W  +  K        +R G+V  I+A +L   +    +  R + +++  +I D + +   
Sbjct: 400 WFFAKDKAAGKQGSIDRCGQVLFIDARELGDLV---DRAERALTNEEIVRIGDTFHAW-- 454

Query: 462 GKFSRMLDYRTFGYRRI 478
            + S+    +   Y  +
Sbjct: 455 -RGSKSAAVKGIMYEDV 470


>gi|307721265|ref|YP_003892405.1| type I restriction-modification system, M subunit [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979358|gb|ADN09393.1| type I restriction-modification system, M subunit [Sulfurimonas
           autotrophica DSM 16294]
          Length = 520

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 112/544 (20%), Positives = 214/544 (39%), Gaps = 76/544 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M+E       L   +W  A  L G     +F   IL F   + L   +      + ++  
Sbjct: 1   MSEEQKKL--LEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKINDYADNLLKEDK 58

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASF 107
                                E  ++  GY    +  +S ++  G+++T N +   +   
Sbjct: 59  ILFCDLDENSEEGKEMLEAIKEDAIESLGYFLKPSELFSAVAKRGNSDTNNFILEDLTGI 118

Query: 108 -------------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVP 151
                         D+ + +FED D +ST        K  L+ K+  +   I+       
Sbjct: 119 LRNIEQSTMGHESEDDFEHLFEDLDLTSTKLGKTEEAKNKLIAKVLSHLDKIDFELKNHD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+ + YE+LI +F S   + A +F TP+ V  +   ++ +    L        +++YD
Sbjct: 179 RDVLGDAYEYLIAQFASGAGKKAGEFYTPQQVSKILAKIVTNKKTKL--------KSVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      V D  +          +GQEL   T+ +    M++  +       
Sbjct: 231 PTCGSGSLLLRVAKEVQDVSN---------FYGQELNRTTYNLARMNMIMHDVHYRK--- 278

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +I+Q  TL       KRF   ++NPPF   W  +   +  + +  + G+  P     
Sbjct: 279 --FDIKQEDTLENPQHRDKRFEAIVANPPFSAHWSANPLFMSDD-RFSQYGKLAP----K 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S     F+ H+  +L    +  G  A+VL    LF G A   E  IRR+L+E+ + ++A+
Sbjct: 332 SKADYAFVQHMIYQL----DDNGTMAVVLPHGVLFRGAA---EGHIRRYLIEDRNYLDAV 384

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +   +K  E    V  I+A++ +   +N    + ++ D+   
Sbjct: 385 IGLPANIFYGTSIPTCILVF--KKCREDSENVLFIDASNEFEKAKN----QNVLTDENID 438

Query: 451 QILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I+  +  R    K+S +   +        +  P    ++        ++ +   ++L  
Sbjct: 439 KIITTFKERSTIDKYSHLATLKEIKENDYNLNIP---RYVDTFEEEEPIDLNAVSQELKA 495

Query: 510 LHQS 513
           L   
Sbjct: 496 LENE 499


>gi|317494152|ref|ZP_07952568.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917925|gb|EFV39268.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 535

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 104/538 (19%), Positives = 199/538 (36%), Gaps = 77/538 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLA 61
            + + L + +W  A+ L G     +F    L F   + L        + + ++    Y  
Sbjct: 8   QNLSELQSRLWNIADTLRGKMNADEFRDYCLGFIFYKYLSEKFVTYANKILKEDGIKYNE 67

Query: 62  FGGSNIDLESFV--------KVAGYSFYNTSEY---------SLSTLGSTNTRNNLESYI 104
               +   +  +        +  GY    T  +              G      +L + +
Sbjct: 68  LTAEHPAYQDIIDAVKDDSIQTLGYFLPPTDLFHTMAQRVAKDQKGAGEGFILEDLATTL 127

Query: 105 ASFS---------DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD 152
            +           D+   +FED D  S+        K  L+ K+      +  +      
Sbjct: 128 RNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVITELDKLSFNLSEASS 187

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ + YE+LI +F S   + A +F TP+ V  L   ++      L        + +YDP
Sbjct: 188 DILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKLKL--------KNVYDP 239

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L       +  G           +GQE+   T+ +    M++  +       +
Sbjct: 240 TCGSGSLLLRVKREASSVGK---------IYGQEMNRTTYNLARMNMILHGVHYADFEIM 290

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                Q  TL     T  +F   ++NPPF  KW      +  + +  + G+  P     S
Sbjct: 291 -----QEDTLEHPQHTHLKFDAIVANPPFSAKWSASPLFMNDD-RFAQYGKLAP----SS 340

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
              M F+ H+   L       G  A+VL    LF G A   E  IR++++E  + I+A++
Sbjct: 341 KADMAFVQHMFYHL----EDDGTMAVVLPHGVLFRGAA---EGHIRKFMIEQQNCIDAVI 393

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++F+ T+I T + +L  RK  +    +  I+A++ +  +    K +  +  +   +
Sbjct: 394 GLPANIFYGTSIPTCVLVL--RKCRKHNDGILFIDASNDFEKV----KTQNRLLPEHIDK 447

Query: 452 ILDIYVSREN-GKFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           I D Y   +   K+S +            + + R +      D+  L  +  +I   +
Sbjct: 448 IADTYNDWKALEKYSHIATLEEIRNNDYNLNIPRYVDTFEAEDEIDLNAVAKEIRNLE 505


>gi|324990377|gb|EGC22315.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK353]
          Length = 538

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 209/568 (36%), Gaps = 61/568 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +A  +   +W  A  L G    +++   ILPF   R L    +    ++ + E Y     
Sbjct: 3   TANDITTKLWAMANKLRGTMDASEYKNYILPFMFYRYLSENQDVYLAQNGLEEFYDVIDD 62

Query: 65  SNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SD 109
              +  LE      GY+      +        N R     +   F               
Sbjct: 63  EEQEDYLEDISSNLGYAIKPEYTWGRLVAKIENHRIKASDFQDMFDSFETQAKRNPMAEQ 122

Query: 110 NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           +   +F D +   T    +  E+A  L  I           D     ++ ++YE+LI +F
Sbjct: 123 DFANVFSDINLGDTRLGSSTNERAKALNDIVLMIHEFSF-KDESGRDILGDVYEYLIGQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP +V  +   L+      +  +       +YDPT G+G  L      
Sbjct: 182 AANAGKKGGEFYTPHEVSQILAKLVT-----VDAKENDDQFRVYDPTMGSGSLLLTVQKE 236

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +     K    +  +GQEL   T+ +    +++  +        + N+++G TL  D 
Sbjct: 237 LPE----GKREGSVAFYGQELNTTTYNLARMNLMMHGVNY-----RNMNLKRGDTLDTDW 287

Query: 287 FTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              ++        F   ++NPP+ +KWE       K     +  RF  G+   S     F
Sbjct: 288 PFAEKDGIQLPLKFDAVVANPPYSQKWEI------KSIDRSKDSRFKFGVAPASKADYAF 341

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H    L       G  AIVL    LF G A   E +IR+ +++ +L+ A++ LP +LF
Sbjct: 342 ILHGLYHL----ESTGTMAIVLPHGVLFRGAA---EGKIRKKIIDENLLHAVIGLPANLF 394

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T + +   RK       V  I+    +   +N    +  +  D   +I++ Y  
Sbjct: 395 YGTSIPTCVLVFKGRKARGECSDVLFIDGASDFEKGKN----QNKLTADNITKIIETYHE 450

Query: 459 RE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE   K++ +            +  P  +    ++  +   E      ++    ++    
Sbjct: 451 REHVDKYAHVASLEEIKDNDYNLNIPRYVDTFEEEEVVPLSEVAQELTQVRAEIEATSAS 510

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545
           + K + +       A+  + + ++  + 
Sbjct: 511 LFKLLGELEGTTEEAKKELAQFVELLKG 538


>gi|262374615|ref|ZP_06067888.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
 gi|262310405|gb|EEY91496.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
          Length = 522

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 217/525 (41%), Gaps = 72/525 (13%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNIDLES 71
           W  A  L G     +F   IL F   + L        + + +     +L    +N +   
Sbjct: 14  WNIANTLRGTMGADEFRDYILGFIFFKYLSEKSVNFANELLDGEEVSFLELDENNPEHVP 73

Query: 72  FVK------VAGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFS---------DNA 111
           +++      +A   +  T +    TL           ++L + + S           D+ 
Sbjct: 74  YIEEIKKNAIAEVGYALTPKQLFHTLAERGRQGEFILDDLTATLKSIEQSTLGTDSADDF 133

Query: 112 KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
             +FED D +ST       ++  L+ K+  +   I+         V+ + YE+LI  F S
Sbjct: 134 ANLFEDLDLNSTKLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYLIGEFAS 193

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP+ V  L   ++    D L        R++YDPTCG+G  L      V 
Sbjct: 194 GAGKKAGEFYTPQTVSTLLAKIVTQGKDRL--------RSVYDPTCGSGSLLLRVKREVK 245

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D           + +GQE+   T+ +    M++  +          +I+Q +TL++    
Sbjct: 246 DVD---------MIYGQEMNRTTYNLARMNMILHDVHFAK-----FDIKQENTLTRPQHL 291

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K+F   ++NPPF   W  D   ++ E +    G+  P     S   M F+ H+  +L  
Sbjct: 292 DKKFDAVVANPPFSANWSADPLFLQDE-RFAAYGKLAP----SSKADMAFVQHMLYQL-- 344

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYL 407
             +  G  A+VL    LF G +   E  IR++L+E  ++++AI+ LP ++F+ T+I T +
Sbjct: 345 --DDNGTMAVVLPHGVLFRGSS---EGVIRQYLIEQMNVVDAIIGLPANIFYGTSIPTCI 399

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            +L  +K  E+   +  I+A++ +   +N    +  +  +   +I+  +  REN  K++ 
Sbjct: 400 LVL--KKNREQSSNILFIDASNEFEKQKN----QNKLLPEHLDKIVAAFGKRENIEKYAH 453

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           +   +        +  P    ++      A ++ D   ++L  L 
Sbjct: 454 VATLQEVKDNDYNLNIP---RYVDTFEAEAEIDLDEIAKQLQALE 495


>gi|260495161|ref|ZP_05815289.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_33]
 gi|260197218|gb|EEW94737.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_33]
          Length = 520

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 118/555 (21%), Positives = 211/555 (38%), Gaps = 70/555 (12%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EP 50
           M        A L   IW  A DL G     DF + +L     R +   L         E 
Sbjct: 1   MNNKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEA 60

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
             S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N
Sbjct: 61  GNSDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFINVRRKADKDENLNVTLDTIFKN 119

Query: 111 -------------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---R 153
                         K +F+D D +S             +    +G+ ++      +    
Sbjct: 120 IENSANGTESESDLKGLFDDIDVNSNKLGGTVVKRNENLVNLINGVGDMKLGDYQENTID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP 
Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +      +         GQE+   T+ +C   M +  ++ D      
Sbjct: 232 CGSGSLLLKFAKILGKNNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK----- 280

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L  
Sbjct: 281 FDIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I
Sbjct: 336 KSKADLAFIMHSLSWL----APNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCI 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K    + +    
Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNK----MTEKHID 441

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            I++ +  REN ++ S ++DY         +     +        +  +E +    ++  
Sbjct: 442 DIVEKFTKRENIEYISNLVDYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIERIVV 501

Query: 510 LHQSFWLDILKPMMQ 524
             +    +I K + +
Sbjct: 502 REEELRKEIDKIIAE 516


>gi|21911180|ref|NP_665448.1| putative type I site-specific deoxyribonuclease hsdM modification
           subunit [Streptococcus pyogenes MGAS315]
 gi|28896556|ref|NP_802906.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes
           SSI-1]
 gi|21905392|gb|AAM80251.1| putative type I site-specific deoxyribonuclease hsdM modification
           subunit [Streptococcus pyogenes MGAS315]
 gi|28811810|dbj|BAC64739.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes SSI-1]
          Length = 526

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 123/564 (21%), Positives = 209/564 (37%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+   ++  +    V G   Y      +   L      N         
Sbjct: 58  NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFHDIEQNGEDFENLFEDIDLYSKKLGSTPQKQNQTIANVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGCED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDSHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|258651342|ref|YP_003200498.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Nakamurella multipartita DSM 44233]
 gi|258554567|gb|ACV77509.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Nakamurella multipartita DSM 44233]
          Length = 548

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 182/478 (38%), Gaps = 63/478 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R  +R +  A G   
Sbjct: 24  TMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGIDE 83

Query: 67  IDLESFV----KVAGYSFYNT-SEYSLSTLGST-----NTRNNLESYIASFSDNAKAIFE 116
             ++ F+    +  G+  +    +   S L           N     +    D A     
Sbjct: 84  DQIDGFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDYLM 143

Query: 117 DFD--FSSTIARLEK-----AGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFG 167
           D +    +T+ R+          L ++   F+         T    ++  +YE+ + +F 
Sbjct: 144 DANPSLRATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGATKARDLLGEVYEYFLEKFA 203

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP                 L +        +YDP CG+GG        +
Sbjct: 204 KAEGKRGGEFYTPAS-----------VVRVLVEVLEPTRGRVYDPCCGSGGMFVQTEKFL 252

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +HH+    +  +GQEL   T  +    + I  L        +   + G T ++D+ 
Sbjct: 253 E---AHHREGSEISVYGQELNERTWRMAKMNLAIHGLSG------NLGPRWGDTFARDIH 303

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y L+NPPF  K            +N +  R+  G+P   + +  ++ H+ +KL 
Sbjct: 304 PDVQADYVLANPPFNIKDWA---------RNDKDPRWKFGVPPAGNANYAWIQHIISKL- 353

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A +V+++  +       GE  IR  L+E DL+  +VALPT LF  T I   L
Sbjct: 354 ---APGGSAGVVMANGSMSTQS--GGEGAIRAQLVEADLVSCMVALPTQLFRSTGIPVCL 408

Query: 408 WILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           W  +  KT       +R G+V  I+A  +   +    +  R ++DD    I   + + 
Sbjct: 409 WFFAKDKTVGTGGSVDRSGRVLFIDARSMGNMV---DRAERSLSDDDIGLIAGTFHAW 463


>gi|300087356|ref|YP_003757878.1| type I restriction-modification system subunit M [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527089|gb|ADJ25557.1| type I restriction-modification system, M subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 523

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 121/538 (22%), Positives = 206/538 (38%), Gaps = 73/538 (13%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EP 50
           MT    +       L   IW+ A D+ G     DF + +L     R +   L      E 
Sbjct: 1   MTNHNSTKEQERAALHRTIWQIANDMRGSVDGWDFKQYVLGMLFYRFISENLTSYLNREE 60

Query: 51  TRSAVRE-KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF- 107
            RS  ++  Y        +      V    FY   SE  ++  G      NL   +A+  
Sbjct: 61  RRSGNQDFDYTRLPDEQAEFGRADTVKEKGFYILPSELFVNVCGKARLDANLNETLATVF 120

Query: 108 ------------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHP-DTVP 151
                        D+ K +F+D D +S+       ++   L ++ +    + L       
Sbjct: 121 RNIENSAKGADSEDDLKGLFDDLDVNSSKLGNTVEKRNQKLTRLIEAIGELRLGNYSDNT 180

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE L+  + S   +   +F TP++V  L   L       + K        +YD
Sbjct: 181 IDAFGDAYEFLMTMYASNAGKSGGEFFTPQEVSELLARLATVGKKEVNK--------VYD 232

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L      +                GQE+   T+ +C   M +  +  +    
Sbjct: 233 PACGSGSLLLKFAKILGKENVRIG------FFGQEINITTYNLCRINMFLHDINYN---- 282

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
               I  G TL+       + F   +SNPP+  KWE D + +          RF P   L
Sbjct: 283 -HFEIAHGDTLTDPKHWDDEPFDAIVSNPPYSTKWEGDSNPLLIND-----PRFSPAGVL 336

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L       G AAIV     L+ G A   E +IR++L++N+ I+
Sbjct: 337 APKSKADLAFTMHMLSWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNYID 389

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP DLFF   IAT + +L   K +    K   I+A+  +    N+ K    + +D 
Sbjct: 390 TVIQLPPDLFFGVTIATCIIVLKKSKKD---NKTLFIDASTEFVRGGNKNK----LTEDN 442

Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
             +IL+ + +R + + F++++D +        I V   +      +   + +L A+I 
Sbjct: 443 LAKILEAFTNRTDVEYFAKLVDNKAIEENACNIAVSSYVAQKDTREAIDIQKLNAEIA 500


>gi|315172562|gb|EFU16579.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1346]
          Length = 537

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 110/531 (20%), Positives = 208/531 (39%), Gaps = 67/531 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A  L   +W +A+ L G    +++   +L     + L  A                P RS
Sbjct: 8   ATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERS 67

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-- 109
                ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 68  TQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHYRIKADNYEFNLTDLQAGFNELE 127

Query: 110 ----NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                   +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 128 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 185

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F S   + A +F TP+ V  + + +     +            +YDP  G+G  + +
Sbjct: 186 IGEFASSAGKKAGEFYTPQAVSKIMSEITSIGQE------TRAPFHIYDPAMGSGSLMLN 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++ +       P  +  HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 240 IRRYLTN-------PDQVHYHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 287

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 288 DADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 342

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 343 HGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFG 395

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 396 TSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 448

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +  +++ +  +         +  P  +    ++  +  +  +    K++  
Sbjct: 449 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPIDLVAVNTNLLKVNEE 499


>gi|169346894|ref|ZP_02865842.1| type I restriction-modification system, M subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296953|gb|EDS79077.1| type I restriction-modification system, M subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 514

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 210/546 (38%), Gaps = 66/546 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                ++L + +W  A DL G+   ++F   IL     R L   +E   + + E+     
Sbjct: 7   QKEQQSNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSY 66

Query: 64  GSNIDLESFVKVA--------GYSF------------YNTSEYSLSTLGSTNTRNNLESY 103
               + E   +          GY                T ++ +  L          + 
Sbjct: 67  EEAWEDEELREALKEELVNDIGYFIEPKFLFDKLLAKIETGDFDIEILEEAINNITESTL 126

Query: 104 IASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                +    +F+D D  ST    +   ++ L+ K+    + I+   D     ++ + YE
Sbjct: 127 GQESEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L
Sbjct: 187 YLIGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLL 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                             + + +GQE    T+ +    ML+  ++         NI+   
Sbjct: 239 LRVSREAK----------VRMFYGQEKTSTTYNLARMNMLLHGVKYS-----DFNIKNDD 283

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL        +F   ++NPP+  KW  D   ++ E +    G+  P     S     F+ 
Sbjct: 284 TLENPQHGDLKFEAIVANPPYSAKWSGDDKFLDDE-RFSAYGKLAP----KSKADFAFIQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ + L       G  A+VL    LF G A   E  IR+ L+E  ++++A++ LP ++FF
Sbjct: 339 HMIHHL----EDNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFF 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  +    +  I+A++ +   +N    + ++ D    +I++ Y  R
Sbjct: 392 GTSIPTVILVF--KKNRKNADNIMFIDASNEFEKGKN----QNVLRDRDVEKIVETYKKR 445

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           EN  K++ +            +  P  +    ++  +  +E     ++L    +     +
Sbjct: 446 ENVDKYAYVATMEEIKENDYNLNIPRYVDTFEEEEEIDIIEVQKNIKELDKEIEELKKSL 505

Query: 519 LKPMMQ 524
              + +
Sbjct: 506 EADLKE 511


>gi|291457405|ref|ZP_06596795.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213]
 gi|291381240|gb|EFE88758.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213]
          Length = 502

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 102/512 (19%), Positives = 197/512 (38%), Gaps = 53/512 (10%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   + A +     IW  A+ L G+   +++  V+L    L+ +    +     + E+
Sbjct: 1   MAKKKDNTAEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQELVEE 60

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
              F     +   E+   V   + + T   +  T       +     I + ++  K I  
Sbjct: 61  GEGFEEDRDEYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKLKGILP 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                +   +      L ++   F+ +++        ++   YE+ + +F     + A +
Sbjct: 121 K----NFARQELDKRRLGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEGKNAGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV     ++                 +YDP CG+GG    + + V     H   
Sbjct: 177 FYTPACVVKTLVEVIEPY-----------HGRVYDPCCGSGGMFVQSADFVKR---HQGN 222

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQE  P T  +    + IR +++D             T  +DL   ++F + L
Sbjct: 223 INDISVYGQESNPTTWKMATMNLAIRGIDAD------LGDHNADTFFEDLHKTEKFDFIL 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K    K       K     R+  G P   + +  ++ H+ + L    N  GR 
Sbjct: 277 ANPPFNLKDWGGK-------KLENDVRWQYGTPPEGNANFAWVQHMIHHL----NRSGRM 325

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +VL++  L      + E EIR  +++ DL+E I+A+P  LF+ T I   LWI++  K  
Sbjct: 326 GMVLANGAL--SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIITKNK-- 381

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDY 470
           ++ GK   I+A D+ T +    ++ R   D+   ++   + +  +G       FS +   
Sbjct: 382 KQSGKTLFIDARDMGTMV---SRRLREFTDEDIAKVSTAFDAFHDGTLETEKGFSAIATT 438

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
                +   +L P R   + +         + 
Sbjct: 439 EDIKAQDY-ILTPGRYVGVAEVEEDDEPFEEK 469


>gi|139474406|ref|YP_001129122.1| type I restriction-modification system M protein [Streptococcus
           pyogenes str. Manfredo]
 gi|134272653|emb|CAM30920.1| type I restriction-modification system M protein [Streptococcus
           pyogenes str. Manfredo]
          Length = 526

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 123/564 (21%), Positives = 208/564 (36%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+    +  +    V G   Y      +   L      N         
Sbjct: 58  NTFTEAQKIFEDAYQDQGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDSHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|28377765|ref|NP_784657.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus plantarum WCFS1]
 gi|28270598|emb|CAD63502.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus plantarum WCFS1]
          Length = 528

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 110/536 (20%), Positives = 212/536 (39%), Gaps = 71/536 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLA 61
           E     A L   +W  A DL G+   +++   IL     R L   +E   + +  +  + 
Sbjct: 5   EQAEQQAELQKRLWAVANDLRGNMDASEYRNYILGLIFYRFLSEKVENYANELLQDDDVD 64

Query: 62  FGGSNIDL-------ESFVKVAGYSFYNTSEYSLSTLG-----------STNTRNNLESY 103
           F  +  D        +  + V G+       ++                         S 
Sbjct: 65  FADAEQDADLMQDLKDEVIDVLGFFIEPRYLFTTMVKKINAGDFDVEMLQNAINEVQNST 124

Query: 104 IASFSDN-AKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +   S+N  K +FED D  S+       +++ L+ K+  + S I+     +   ++ + Y
Sbjct: 125 LGKESENDFKGLFEDLDLQSSRLGNTVAKRSELIAKVILSLSNIDFGEQDIKIDILGDAY 184

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F +   + A +F TP+ V  L   ++    D L        +T+YDPT G+G  
Sbjct: 185 EYLIGQFAASAGKKAGEFYTPQQVSKLLARIVTAGKDRL--------KTVYDPTMGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L    N+                +GQE+   T+ +    +L+  +  +       +++QG
Sbjct: 237 LLQLGNYATIGN----------YYGQEINGTTYNLARMNLLMHEVSYN-----RFDLRQG 281

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TL +D F    F   ++NPP+  KW  D      +  + E  R        S     F+
Sbjct: 282 DTLEEDHFDDLTFDAVVANPPYSAKWNPD------DKLDDERFRKYGKTAPKSKADFAFV 335

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLF 398
            H+   L    N  G  A+VL    LF G A   E +IR++++E+D  ++A++ LP +LF
Sbjct: 336 EHMLYHL----NNEGTMAVVLPHGVLFRGAA---EGKIRQYMIEHDNVLDAVIGLPANLF 388

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T + +    +    R  +  I+A++ +   +N    +  + D+   +IL+    
Sbjct: 389 YGTSIPTVVLVFKKGRE---RQDIFFIDASNDFEKGKN----QNNLTDENVDKILETLEK 441

Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           RE+  K++   +          +  P    ++        ++ D   +++      
Sbjct: 442 REDVDKYAHRAEVAEIVENEYNLNIP---RYVDTFEEEPPVDVDKLVKEMGEADAK 494


>gi|304320736|ref|YP_003854379.1| type I restriction-modification system, M subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299638|gb|ADM09237.1| type I restriction-modification system, M subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 504

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 107/536 (19%), Positives = 206/536 (38%), Gaps = 56/536 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                   +   +W+  +   G      +   +L    L+ L           +++Y   
Sbjct: 2   NAQVKQDEINKAVWEACDTFRGTVDAGVYKDYVLTMLFLKYLSDVWNDHYEEYKKEYGDE 61

Query: 63  GGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                ++   E FV     +FY   +              L +   +     + +F+D  
Sbjct: 62  PELINEMMKNERFVLPESANFYALYKRRHEAGNGERIDKALHAIEEANIAKLRDVFQDIS 121

Query: 120 FSSTIARLE--KAGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           F+S     E  K  LL ++ ++F    + L P  +    ++ N YE LI++F ++    A
Sbjct: 122 FNSNKLGEEAHKNELLKELLEDFAKDKLNLRPSRIGKLDIIGNAYEFLIKQFAADSGRKA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L   L+          +P     + DPTCG+G  L      V      +
Sbjct: 182 GEFYTPPEVSELMAELV----------APKEGDEICDPTCGSGSLLMKCGKRVQ---IEN 228

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
           K       +GQE    T A+    M +   +       +  I+ G T+            
Sbjct: 229 KGSKKYALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLDGEDSL 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F   ++NPPF  +      A     +  +  RF  G+P  + G   F++H+   ++  
Sbjct: 282 KHFDVVVANPPFSLEKWGHGTA-----EGDKFSRFRRGIPPKTKGDYAFILHMVETMKPK 336

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+V     LF    GS E +IR+ L+E +L++A++ LP  LF+ T I   + I
Sbjct: 337 ---SGRMAVVAPHGVLFR---GSTEGKIRQKLVEENLLDAVIGLPEKLFYGTGIPATILI 390

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           L  +K++     V  I+A+  + S +N    +  ++++   +I++ Y +R++  K++   
Sbjct: 391 LRKKKSDR---NVLFIDASREFISGKN----QNQLSNNHIAKIVETYQARKSVDKYAYFA 443

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                      +  P  +    ++  +     R E +    +L+ L       + +
Sbjct: 444 TPEEMAENDYNLNIPRYVDTFEEEEEIDLMAVRAEREKLKAELTDLEAQMDGYLKE 499


>gi|329116119|ref|ZP_08244836.1| type I restriction-modification system, M subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326906524|gb|EGE53438.1| type I restriction-modification system, M subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 531

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 111/558 (19%), Positives = 215/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A  L   +W +A+ L G    +++   +L     + L  A                P RS
Sbjct: 2   ATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-- 109
                ++ +   + D  +E+     GY       +    + + N   NL    A F++  
Sbjct: 62  TQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHYRIKADNYEFNLTDLQAGFNELE 121

Query: 110 ----NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                   +F D D +ST       ++   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  + +
Sbjct: 180 IGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRAPFH------IYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++ +    H        HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYLINPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVIMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  RE
Sbjct: 390 TSIPTTIIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +  +    K++      +   L
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEAPVDLVAVNTNLLKINEELVQQEQVLL 502

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        +S
Sbjct: 503 SLINDFSESEENQALIDS 520


>gi|301168868|emb|CBW28459.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 10810]
          Length = 514

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 115/530 (21%), Positives = 201/530 (37%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EFLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  +
Sbjct: 337 AFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+   F++ + +           V   +      +   +  L A I 
Sbjct: 443 ADKEDVPHFAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|319898180|ref|YP_004136377.1| type i restriction-modification system methyltransferase subunit
           [Haemophilus influenzae F3031]
 gi|317433686|emb|CBY82073.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3031]
          Length = 514

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 114/530 (21%), Positives = 201/530 (37%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  +
Sbjct: 337 AFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    ++ + +           V   +      +   +  L A I 
Sbjct: 443 ADKEDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|315634370|ref|ZP_07889657.1| type I restriction-modification system DNA-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
 gi|315476960|gb|EFU67705.1| type I restriction-modification system DNA-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
          Length = 515

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 122/532 (22%), Positives = 207/532 (38%), Gaps = 68/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M         L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MATAIQQREELQRRIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60

Query: 59  YLAFGGSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y AF   N  + +     +K  GY  Y  S+   + + + NT  NL + + S        
Sbjct: 61  YSAFNDDNPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKSIFTDIENS 119

Query: 108 ------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                   + K +F DFD +S        +K   L  + K  + ++    +     +  +
Sbjct: 120 ATGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIA 280

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   K F   +SNPP+  KW    D      +     RF P   L   S  
Sbjct: 281 LGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IA  + +LS  K +    + Q I+A+ L+ S  N      I+ ++   QIL 
Sbjct: 389 PNLFFGTSIAVNILVLSKHKPDT---QTQFIDASGLFKSATN----NNILEEEHIEQILK 441

Query: 455 IYVSREN-GKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++  +E+    ++ + +         + V   +      +   + +L A+I 
Sbjct: 442 LFADKEDVPHLAKSVSFEDIVNNEYNLAVSSYVEQKDTREVIDIDKLNAEIK 493


>gi|17227995|ref|NP_484543.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120]
 gi|17129844|dbj|BAB72457.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120]
          Length = 537

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 213/551 (38%), Gaps = 88/551 (15%)

Query: 1   MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58
           MT    G    L   +W  A+ L G     +F    L F   + L        + V  + 
Sbjct: 1   MTNGQNGQKKKLETQLWNIADSLRGKMNADEFRDYCLGFIFYKYLSERQHLYANEVLAED 60

Query: 59  ---YLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTL----------------- 91
              ++    S+ + + +++            F   SE   S                   
Sbjct: 61  GIDFINIDESSKEGQEYLEAIKEESIATLGYFLKPSELFSSLAERALGAKTASEENLADE 120

Query: 92  ---GSTNTRNNLESYIASFS---------DNAKAIFEDFDFSSTIAR---LEKAGLLYKI 136
               S    ++L   ++S           ++   +FED D +ST        K  L+ KI
Sbjct: 121 DFEASNFILDDLTQVLSSIERSTMGKESEEDFDHLFEDLDLTSTKLGRTPKAKNALIAKI 180

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             + + I+   +     V+ + YE+LI +F S   + A +F TP+ V  +   ++     
Sbjct: 181 LVHLNKIDFRLEDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTTGKS 240

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            L        +++YDPTCG+G  L      V   G           +GQE+   T+ +  
Sbjct: 241 RL--------KSVYDPTCGSGSLLLRVAREVESVGD---------FYGQEMNRTTYNLAR 283

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++  +        + +++Q  TL      G RF   ++NPPF  +W  +K   E + 
Sbjct: 284 MNMILHGVHY-----RNFDLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANK-LFESDD 337

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +  + G+  P     S     F+ H+ + L    +  G  A+VL    LF G A   E  
Sbjct: 338 RFSQYGKLAPA----SKADFAFVQHMIHHL----DDNGIMAVVLPHGVLFRGAA---EGH 386

Query: 377 IRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IR++++ E + ++A++ LP ++F+ T+I T + +   +K  E    +  I+A+  +   +
Sbjct: 387 IRKYVIKERNWLDAVIGLPANIFYGTSIPTCILVF--KKCRENPDDILFIDASAYFEKAK 444

Query: 436 NEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDK 492
           N    +  + D+   +I+  Y  R ++ K+S              + + R +      ++
Sbjct: 445 N----QNYLRDEDVEKIVSTYRQRIQSEKYSYRAPLTEIAENDFNLNIPRYVDTFEEEEE 500

Query: 493 TGLARLEADIT 503
             L  +  +I 
Sbjct: 501 IDLDAVAREIR 511


>gi|315639285|ref|ZP_07894447.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315480611|gb|EFU71253.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 535

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 122/544 (22%), Positives = 210/544 (38%), Gaps = 82/544 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------- 56
                +L + IWK A  L G+    DF   +L     R +   L    +A +        
Sbjct: 9   QAQRDALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISPATMQ 68

Query: 57  --------EKYLAFGGSNIDL-----ESFVKVAGYSFYNTSEYSL----STLGSTNTRNN 99
                     Y      +ID      E+ +   G+  Y +  +          +TN    
Sbjct: 69  TGGGGDNPNAYENLSDKDIDENEKSREAIIDAKGFFIYPSQLFCNVLKSHAQDTTNLNQT 128

Query: 100 LESYIASFSDN---------AKAIFEDFDFSSTI----ARLEKAGLLYKICKNFSGIELH 146
           L +  A    +          K +F D D +S+       L++   LY++ +  + ++LH
Sbjct: 129 LSNVFAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEKLYQVMQEIATLDLH 188

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                     + YE+L+R +  +  +   +F TP++V +L   L+     ++ K      
Sbjct: 189 YSDNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSYLLARLVSYGKQSVNK------ 242

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+G  L      +                GQE+ P ++ +C   ML+  +  
Sbjct: 243 --VYDPACGSGSLLLQFAKVLGIDNIKQG------FFGQEINPTSYNLCRINMLLHDIGF 294

Query: 267 DPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +     + +I  G TL +      + F   +SNPP+  KW  D D      K     RF 
Sbjct: 295 E-----NFDIALGDTLLEPKHADDEPFDAIVSNPPYPTKWIGDDDP-----KLINDPRFA 344

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   L   S   + F MH+ + L    +  G  AIV     L+    G  E +IR++L++
Sbjct: 345 PAGVLAPKSYADLAFTMHMLSWL----SPSGTCAIVEFPGVLYR---GGKEKQIRKYLID 397

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            + I+ I+ LP +LFF TNIAT + +L   K   +      I+A++ +T I     K+ I
Sbjct: 398 QNFIDTIIQLPENLFFGTNIATSIIVLKKNK---QSVATLFIDASEQFTKIT----KKNI 450

Query: 444 INDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRM--SFILDKTGLARLEA 500
           +       I++ Y  RE+   FSR++           +     +      +   +A L A
Sbjct: 451 LESTHINTIVEAYAKREDREHFSRLVSLEEIRANDYNLSTSTYITPKDTREHIDIAVLNA 510

Query: 501 DITW 504
            I  
Sbjct: 511 TIKD 514


>gi|312880991|ref|ZP_07740791.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784282|gb|EFQ24680.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 548

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 118/535 (22%), Positives = 200/535 (37%), Gaps = 73/535 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE------ 57
                A L   IW+ A DL G     DF   +L     R +   L    +          
Sbjct: 27  KEAERAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNEQERRAGTPD 86

Query: 58  -KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF-------- 107
             Y A   +  +      V    FY   SE   +         +L   +           
Sbjct: 87  FDYAALSDAEAEQGRDETVKEKGFYILPSELFANVRARARRDEDLNETLDRVFAHIEGSA 146

Query: 108 -----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-EL-------HPDTVPDRV 154
                 D+ K +F+D D +S       A    K+ K    I +L               +
Sbjct: 147 RGTDSEDDFKGLFDDLDVNSGKLGPTVAKRNEKLVKLLDAIGDLPLAGGGGGFADNTIDL 206

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L++ + S   +   +F TP++V  L   +       + K        +YDP C
Sbjct: 207 FGDAYEYLMQMYASTAGKSGGEFYTPQEVSELLAHIAAAGKREVNK--------VYDPAC 258

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L   +  +                GQE+   T+ +C   M +  +  +       
Sbjct: 259 GSGSLLLQFLKVLGPDRVRQG------FFGQEINLTTYNLCRINMFLHDVNYEK-----F 307

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G TL+       + F   +SNPP+  +WE D + +          RF P   L   
Sbjct: 308 HIAHGDTLTDPAHGDDEPFEAIVSNPPYSIRWEGDANPLLIND-----PRFAPAGVLAPK 362

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F MH+ + L +     G AAIV     L+ G A   E++IRR+L++N+ ++A++
Sbjct: 363 SKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRRYLIDNNYVDAVI 415

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP DLFF T IAT + +L   K +        ++A+       N+ +    ++ + R++
Sbjct: 416 QLPADLFFGTTIATCVIVLKKSKGDNA---TLFLDASGECVRSGNKNR----LDPEHRQK 468

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           IL  Y +R +   F+R++D          I V   +      +   +  L A+I 
Sbjct: 469 ILQAYRARRDVPHFARLVDNEEIARNGYNIAVSSYVEQRDTREAVDIRALNAEIA 523


>gi|198283096|ref|YP_002219417.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666139|ref|YP_002425314.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247617|gb|ACH83210.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518352|gb|ACK78938.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 520

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 128/549 (23%), Positives = 213/549 (38%), Gaps = 54/549 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----- 55
           M    G   SL ++IW  A  + G      +   ILP    +RL    +   + +     
Sbjct: 1   MANNNGKDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 56  -REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA 111
            R+K      ++  L  F             +S+    S        +    IA  +   
Sbjct: 61  SRKKAFQLAKADHKLVRFYLPLVPDDPEQPVWSVIRKLSDWIGEGVTSHMRAIARENPLL 120

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + I +  DF++T    R      L  + +  S   L  + V   ++   YE+LIR+F   
Sbjct: 121 QGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFAEG 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  + + +L           P     +YDPTCG+GG L      + +
Sbjct: 181 GGQSAGEFYTPPEVGTIMSRVL----------QPEPGMEIYDPTCGSGGLLVKCEIAMEE 230

Query: 230 CGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                K     L   GQE  PET A+    M+I  +E             G T     F 
Sbjct: 231 TAKGKKRTVAPLKLFGQEFTPETWAMANMNMIIHDMEGQIEI--------GDTFKNPKFR 282

Query: 289 GK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMHL 342
            K     F   ++NP + + W       E ++ N EL RF  G G P  S     ++ H+
Sbjct: 283 SKGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKSSADWGWVQHI 337

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFF 399
              +    N  GRAA+VL +     G   +G   E  +R+W +++DLIE+++ LP +LF+
Sbjct: 338 HASM----NATGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPENLFY 393

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  L+  K  ER+GKV L+NA+ ++      G  +  I +   ++I D  +  
Sbjct: 394 NTTAPGIVLFLNKAKAHERKGKVFLVNASQVFEK----GDPKNFIPEAGIQRIADTLIGW 449

Query: 460 -ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            E  K SR++D+         +  P R     D      +   +   +            
Sbjct: 450 VEAEKLSRIVDHAELKKNDYNIS-PSRYIHTSDAETYRPIAEIVEELEAIEAEAKETDQA 508

Query: 519 LKPMMQQIY 527
           L  +++Q+ 
Sbjct: 509 LDRILKQLG 517


>gi|168211072|ref|ZP_02636697.1| type I restriction-modification system, M subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170710874|gb|EDT23056.1| type I restriction-modification system, M subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 514

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 211/546 (38%), Gaps = 66/546 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                ++L + +W  A DL G+   ++F   IL     R L   +E   + + E+     
Sbjct: 7   QKEQQSNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSY 66

Query: 64  GSNIDLESFVKVA--------GYSF------------YNTSEYSLSTLGSTNTRNNLESY 103
               + E   +          GY                T ++ +  L          + 
Sbjct: 67  EEAWEDEELREALKEELVNDIGYFIEPKFLFDKLLAKIETGDFDIEILEEAINNITESTL 126

Query: 104 IASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                +    +F+D D  ST    +   ++ L+ K+    + I+   D     ++ + YE
Sbjct: 127 GQESEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L
Sbjct: 187 YLIGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLL 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                             + + +GQE    T+ +    ML+  ++         NI+   
Sbjct: 239 LRVSREAK----------VRMFYGQEKTSTTYNLARMNMLLHGVKYS-----DFNIKNDD 283

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL        +F   ++NPP+  KW +D   ++ E +    G+  P     S     F+ 
Sbjct: 284 TLENPQHGDLKFEAIVANPPYSAKWSRDDKFLDDE-RFSAYGKLAP----KSKADFAFIQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ + L       G  A+VL    LF G A   E  IR+ L+E  ++++A++ LP ++FF
Sbjct: 339 HMIHHL----EDNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFF 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  +    +  I+A++ +   +N    + ++ D    +I++ Y  R
Sbjct: 392 GTSIPTVILVF--KKNRKNADNIMFIDASNEFEKGKN----QNVLRDRDVEKIVETYKKR 445

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           EN  K++ +            +  P  +    ++  +  +E     ++L    +     +
Sbjct: 446 ENVDKYAYVATMEEVKENDYNLNIPRYVDTFEEEEEIDIIEVQKNIKELDKEIEELKKSL 505

Query: 519 LKPMMQ 524
              + +
Sbjct: 506 EADLKE 511


>gi|121609378|ref|YP_997185.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
 gi|121554018|gb|ABM58167.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 526

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/539 (22%), Positives = 204/539 (37%), Gaps = 74/539 (13%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
           M     +  A L   IW+ A DL G     DF   +L     R +   L    +      
Sbjct: 1   MNNSKETERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNEQERNA 60

Query: 58  -----KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYI------- 104
                +Y A   S  +      VA   FY   S    +         NL   +       
Sbjct: 61  GDPEFEYAALNDSGAEFGRAETVAEKGFYILPSHLFDNVRKQARLDANLNETLSRVFADI 120

Query: 105 ------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD----- 152
                 A   D+ K +F+D D +S+      A    K+ K    I +L   + P      
Sbjct: 121 ESSANGADSEDDFKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSAPGKFSDN 180

Query: 153 --RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  + YE+L++ + S   +   +F TP++V  L   + +     + K        +Y
Sbjct: 181 TIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSELLARITVVGKTEINK--------VY 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L      +                GQE+   T  +C   M +  +  +   
Sbjct: 233 DPACGSGSLLLKFAKVLGHDAVRQG------FFGQEINLTTFNLCRINMFLHDVNYEK-- 284

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               N+  G TL+       + F   +SNPP+  +W+ D + +          RF P   
Sbjct: 285 ---FNVAHGDTLTDPAHWDDEPFEAIVSNPPYSIRWDGDANPLLIND-----PRFAPAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ +
Sbjct: 337 LAPKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYV 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP DLFF T IAT + +L   K   R      ++A+  +    N+ K    + D 
Sbjct: 390 DTVIQLPPDLFFGTTIATCIIVLKKSK---RDNATLFVDASAEFMRSGNKNK----LTDA 442

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
            +++ILD Y+ R N   F+R+++          I V   +  +       +  L A I 
Sbjct: 443 HQQKILDAYIERRNIDHFARLVENGDIAENGYNIAVSSYVAQADNSVAVDIQALNAKIA 501


>gi|148544099|ref|YP_001271469.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|184153471|ref|YP_001841812.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM
           1112]
 gi|227364523|ref|ZP_03848586.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri MM2-3]
 gi|325682361|ref|ZP_08161878.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus reuteri MM4-1A]
 gi|148531133|gb|ABQ83132.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|183224815|dbj|BAG25332.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM
           1112]
 gi|227070450|gb|EEI08810.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri MM2-3]
 gi|324978200|gb|EGC15150.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus reuteri MM4-1A]
          Length = 510

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/522 (22%), Positives = 209/522 (40%), Gaps = 58/522 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           ++ + +WK A+ L G    +++  V+L    L+    + E  R  + +        + D+
Sbjct: 9   NIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFEERRQELLKTEYPEDAEDPDM 68

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
               +   V   + +   E++  T       ++  + I   +D+ + I      S  + +
Sbjct: 69  YLENNIFWVPQEARWAKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASPDLDK 128

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                 L ++    S I++      D  V+  +YE+ +  F S+  +   +F TPR +V 
Sbjct: 129 ----TRLGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPRSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   ++                 +YDP CG+GG    +   V     H      L   G+
Sbjct: 185 ILVEMIEPYKG-----------RIYDPCCGSGGMFVQSEEFVRH---HQGELKDLHVFGE 230

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    + IR ++SD          QG T + DL  G RF+Y L+NPPF  K 
Sbjct: 231 ESNPTTWKLAKMNLAIRGIDSD------LGPHQGDTFTNDLHKGVRFNYILANPPFNIKN 284

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
              +       K  E  R+  G+P   + +  ++ H+ +KL       G+A  VL++  L
Sbjct: 285 WGGE-------KLQEDARWKYGVPPTGNANYAWIEHIISKL----APDGKAGFVLANGAL 333

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----RRGK 421
               +   E  IR+ +LE+D I+AIVALP  +F+ T I   LW +   K  E    R+G+
Sbjct: 334 ST--SNKEEFAIRKAILEDDKIDAIVALPEKMFYSTGIPVSLWFVDMNKESEDERSRKGE 391

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---------RENGKFSRMLDYRT 472
              I+A +L   I    +  R  NDD  +++ D Y +         ++   F ++     
Sbjct: 392 TLFIDARNLGEMI---DRTHRAFNDDDIKKVADTYHAYRGTNDQEYKDVAGFCKIAKLDE 448

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                  VL P R   +  +            R  S L + F
Sbjct: 449 IAKNDY-VLTPGRYVGLAKQEDDGESYEVKMKRLTSELKEQF 489


>gi|32455489|ref|NP_862615.1| hypothetical protein pAH82_p16 [Lactococcus lactis subsp. lactis]
 gi|7767522|gb|AAF69138.1|AF228680_2 HsdM [Lactococcus lactis]
 gi|9789463|gb|AAF98315.1|AF243383_16 HsdM [Lactococcus lactis subsp. lactis]
          Length = 537

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 112/565 (19%), Positives = 215/565 (38%), Gaps = 70/565 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M      A  L   +W +A+ L G    +++   +L     + L  A             
Sbjct: 1   MERRIIMATGLKQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKT 60

Query: 50  ---PTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              P RS     ++ +   + D  +E+     GY       +    + + N   NL    
Sbjct: 61  DTFPERSTQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDHLFYHYRIKADNYEFNLTDLQ 120

Query: 105 ASFSD------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           A F++          +F D D +ST       ++   + ++ +    I+L        V+
Sbjct: 121 AGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN--GDVI 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  F +   + A +F TP+ V  + + +     ++           +YDP  G
Sbjct: 179 GDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESRAPFH------IYDPAMG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  + +   ++ +    H        HGQEL   T  +    +++  ++ +       N
Sbjct: 233 SGSLMLNIRRYLINPNQVH-------YHGQELNTTTFNLARMNLILHGVDKE-----RMN 280

Query: 276 IQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG  L   S 
Sbjct: 281 LNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPKSK 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ L
Sbjct: 336 ADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGL 388

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+
Sbjct: 389 PANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIV 441

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-- 510
             Y  RE+  +++ +  +         +  P  +    ++  +  +  +    K +    
Sbjct: 442 STYKKREDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVAVNTNLLKTNEELV 501

Query: 511 -HQSFWLDILKPMMQQIYPYGWAES 534
             +   L ++    +        +S
Sbjct: 502 QQEQVLLSLINDFSESEENQALIDS 526


>gi|242243195|ref|ZP_04797640.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis W23144]
 gi|242233349|gb|EES35661.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis W23144]
          Length = 518

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 202/544 (37%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   + + ++       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 66  NIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR----NNLESYIASFSDNAKAI 114
             + E++ +                 +     +    T+     +L   I    ++ +  
Sbjct: 69  AWENEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128

Query: 115 ---------FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                    F D D +ST        +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNKPNL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VGREA----------DVRFYYGQEYNNTTFNLARMNMLLHDVNY-----TRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G++F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGYGK-----LAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +   +N    +  + D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEKGKN----QNHLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             KFS +            +  P  +    ++  +   +       +     +   +I  
Sbjct: 448 IDKFSYVASLDEIKDNDYNLNIPRYVDKFEEEEPIDLEQVQQQLSDIDKEIANVESEIND 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|145628525|ref|ZP_01784325.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145639725|ref|ZP_01795327.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|144978995|gb|EDJ88681.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145271093|gb|EDK11008.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittII]
          Length = 515

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 118/532 (22%), Positives = 206/532 (38%), Gaps = 68/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60

Query: 59  YLAFGGSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y AF      + +     +K  GY  Y  S+   + + + NT  NL + + +        
Sbjct: 61  YSAFNDDAPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKNIFTDIENS 119

Query: 108 ------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                   + K +F DFD +S        +K   L  + K  + ++    +     +  +
Sbjct: 120 ATGFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G
Sbjct: 180 AYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIA 280

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S  
Sbjct: 281 LGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL 
Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL 
Sbjct: 389 PNLFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILK 441

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++  +E+    ++ + +           V   +      +   +  L A I 
Sbjct: 442 LFADKEDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 493


>gi|253735333|ref|ZP_04869498.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726740|gb|EES95469.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 579

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKETIDKYSYSATLQEIAENDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|229521080|ref|ZP_04410501.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
 gi|229341965|gb|EEO06966.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
          Length = 529

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 127/542 (23%), Positives = 208/542 (38%), Gaps = 79/542 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A L   IW  A D+ G     DF + +L     R +        +   E   
Sbjct: 1   MTSL-QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGDESVN 59

Query: 59  YLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y A    + ++    E  +K  GY  Y  S+   +   + +   NL + +A+        
Sbjct: 60  YAAMSDDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANAHKNENLNTDLAAIFAAIENS 118

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                   + K +F DFD +S         K   L  + K  SG+     +     +  +
Sbjct: 119 ANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKCLAAVLKGVSGLNFGSFEENQIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQEL   T+ +    M +  +  D       NIQ
Sbjct: 231 SLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK-----FNIQ 279

Query: 278 QGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
            G TL +  F      + F   +SNPP+  KW    D            RF P   L   
Sbjct: 280 LGDTLIEPHFLEERNNRGFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPK 334

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++
Sbjct: 335 SKADFAFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVI 387

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD---- 447
           +L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N      ++ D+    
Sbjct: 388 SLAPNLFFGTTIAVNILVLSKHKTDTT---TQFIDASGLFKKETN----NNVLTDNDDEK 440

Query: 448 ---QRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEAD 501
                +QI+ ++ S+EN   F++ +D          + V   +      +   +A L A+
Sbjct: 441 NPGHIQQIIKVFASKENVDHFAKSVDLDVIAANSYNLSVSSYVEAKDNRELVDIAELNAE 500

Query: 502 IT 503
           + 
Sbjct: 501 LK 502


>gi|260206067|ref|ZP_05773558.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis K85]
 gi|289575453|ref|ZP_06455680.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis K85]
 gi|289539884|gb|EFD44462.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis K85]
          Length = 540

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 103/478 (21%), Positives = 186/478 (38%), Gaps = 62/478 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G   
Sbjct: 14  TMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEE 73

Query: 67  IDLESFV----KVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +E  +    +  GY  +     +     + NT+            I    D A     
Sbjct: 74  SQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVM 133

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        +     +M  +YE+ +  F 
Sbjct: 134 KANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFA 193

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L                 +YDP CG+GG        +
Sbjct: 194 RAEGKRGGEFFTPPSVVKVIVEVLEP-----------SSGRVYDPCCGSGGMFVQTEKFI 242

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H   P  +  +GQE   ET  +    + I  ++     +     +   T ++D  
Sbjct: 243 YE---HDGDPKDVSIYGQESIEETWRMAKMNLAIHGID-----NKGLGARWSDTFARDQH 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++NPPF  K            +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 295 PDVQMDYVMANPPFNIKDWA---------RNEEDPRWRFGVPPANNANYAWIQHILYKL- 344

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRA +V+++  + +   G  E +IR  ++E DL+  +VALPT LF  T I   L
Sbjct: 345 ---APGGRAGVVMANGSMSSNSNG--EGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCL 399

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           W  +  K        +R G+V  I+A +L   +    +  R + +++  +I D + + 
Sbjct: 400 WFFAKDKAAGKQGSIDRCGQVLFIDARELGDLV---DRAERALTNEEIVRIGDTFHAW 454


>gi|322691670|ref|YP_004221240.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516263|emb|CBK69879.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|320456526|dbj|BAJ67148.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 502

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/512 (19%), Positives = 197/512 (38%), Gaps = 53/512 (10%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   + A +     IW  A+ L G+   +++  V+L    L+ +    +     + E+
Sbjct: 1   MAKKKDNTAEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQELVEE 60

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
              F     +   E+   V   + + T   +  T       +     I + ++  K I  
Sbjct: 61  GEGFEEDRDEYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKLKGILP 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                +   +      L ++   F+ +++        ++   YE+ + +F     + A +
Sbjct: 121 K----NFARQELDKRRLGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEGKNAGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV     ++                 +YDP CG+GG    + + V     H   
Sbjct: 177 FYTPACVVKTLVEVIEPY-----------HGRVYDPCCGSGGMFVQSADFVKR---HQGN 222

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQE  P T  +    + IR +++D             T  +DL   ++F + L
Sbjct: 223 INDISVYGQESNPTTWKMATMNLAIRGIDAD------LGDHNADTFFEDLHKTEKFDFIL 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K    K       K     R+  G P   + +  ++ H+ + L    N  GR 
Sbjct: 277 ANPPFNLKDWGGK-------KLENDVRWQYGTPPEGNANFAWVQHMIHHL----NRSGRM 325

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +VL++  L      + E EIR  +++ DL+E I+A+P  LF+ T I   LWI++  K  
Sbjct: 326 GMVLANGAL--SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIITKNK-- 381

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDY 470
           ++ GK   I+A D+ T +    ++ R   D+   ++   + +  +G       FS +   
Sbjct: 382 KQSGKTLFIDARDMGTMV---SRRLREFTDEDIAKVSTAFDAFRDGTLETEKGFSAIATT 438

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
                +   +L P R   + +         + 
Sbjct: 439 EDIKAQDY-ILTPGRYVGVAEVEEDDEPFEEK 469


>gi|86750172|ref|YP_486668.1| type I restriction-modification system, M subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86573200|gb|ABD07757.1| type I restriction-modification system, M subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 515

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/530 (22%), Positives = 206/530 (38%), Gaps = 64/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW  A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTGQ-EQRAALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEADDESID 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      D++         F   S+  ++   + N  ++L + +A           
Sbjct: 60  YAALSDDVITDDIKDDAIKTKGYFIYPSQLFVNVAKNANINHSLNTDLAHIFAAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + + +F DFD +ST       EK   L K+ K  + ++          +  + Y
Sbjct: 120 GYPSEQDIRGLFADFDTTSTRLGHTVSEKNSRLAKVLKRVAELDFGDFHNSQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTQVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +              GQE+   T+ +    M +  +  D       NIQ+G
Sbjct: 232 LLQAKKHFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIQRG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL++  F   + F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 281 DTLTQPHFQDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      +   A   E +IR++L++N+ +E ++AL ++
Sbjct: 336 AFVLHALSYL----SAKGRAAIVCFPGIFYRDGA---EKKIRQYLVDNNYVETVIALASN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +L+  KT+     +Q I+A+        +     ++ DD   ++++I+
Sbjct: 389 LFYGTTIAVTILVLAKNKTDTA---IQFIDAS--GEEFFKKATNTNLMTDDHIARVMEIF 443

Query: 457 VSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
             +E+    +  + Y     R   + V   +      +   +  L A I 
Sbjct: 444 DRKEDVDHVAASVQYEIIVERGYNLSVSSYVEPRDTREIVSIGELNAKIR 493


>gi|315506715|ref|YP_004085602.1| type i restriction-modification system, m subunit [Micromonospora
           sp. L5]
 gi|315413334|gb|ADU11451.1| type I restriction-modification system, M subunit [Micromonospora
           sp. L5]
          Length = 522

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 118/533 (22%), Positives = 199/533 (37%), Gaps = 69/533 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSA 54
           T      A L   IW+ A DL G     DF   +L     R +   L       E     
Sbjct: 4   TTKEAQRAELHKTIWRIANDLRGSVDGWDFKTYVLGILFYRFISENLTAYVNEGERRAGE 63

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF------ 107
               Y        ++     VA   FY   SE  ++      +  +L   +         
Sbjct: 64  ADFDYTKLTDKQAEVGRKATVAEKGFYILPSELFVNVRKRAASDPDLNETLERVFRNIEG 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMS 156
                   D+ K +F+D D +S       A    K+ K  + + +L      +       
Sbjct: 124 SAVGTDSEDDLKGLFDDLDVNSGKLGNTVARRNEKLVKLLNAVGDLKLGDFNNHAIDAFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP++V  L   + +    ++ K        +YDP CG+
Sbjct: 184 DAYEYLMTMYASSAGKSGGEFFTPQEVSELLARITVVGKKSVNK--------VYDPACGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +                GQE+   T+ +    M +  +  +       NI
Sbjct: 236 GSLLLQFAKVLGQKNVRQG------FFGQEINLTTYNLARINMFLHDIGYEQ-----FNI 284

Query: 277 QQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL        + F   +SNPP+  KW  D + +          RF P   L   S 
Sbjct: 285 AHGDTLLDPAHWDEEPFEAIVSNPPYSTKWPGDSNPLLIND-----PRFSPAGVLAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+   L +     G AAIV     L+ G A   E +IR++L++N+ ++ ++ L
Sbjct: 340 ADLAFTMHMLRWLAV----NGTAAIVEFPGVLYRGGA---EQKIRKYLVDNNYVDTVIQL 392

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF   IAT + +L   K +     V  I+A+  +  + N+ K    +  + R+ IL
Sbjct: 393 PPDLFFGVTIATCIIVLKKSKND---NNVLFIDASAEFKRVGNKNK----LLPEHRKMIL 445

Query: 454 DIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           D +V+R +   F+R++           + V   +       +  +  L A I+
Sbjct: 446 DAFVARRSVDHFARLVPNTDIAGNSHNLSVSSYVEEEDTRQRVDITALNAKIS 498


>gi|259419466|ref|ZP_05743382.1| type I restriction-modification system, M subunit [Silicibacter sp.
           TrichCH4B]
 gi|259344707|gb|EEW56594.1| type I restriction-modification system, M subunit [Silicibacter sp.
           TrichCH4B]
          Length = 505

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 112/523 (21%), Positives = 197/523 (37%), Gaps = 52/523 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   +    W   +   G      +   IL    L+ +           R++Y 
Sbjct: 1   MTDQ-VTQQQINQTAWAACDTFRGAVDAGQYKDYILVMLFLKYISDLWNDHLETYRKQYG 59

Query: 61  AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                         F+   G SFY+                 LE    +     + +F +
Sbjct: 60  DDEARIRRRLERERFILPEGASFYDLYAQRNEANIGERINIALEKIEDANRAKLEGVFRN 119

Query: 118 FDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            DF+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  +
Sbjct: 120 IDFNSEANLGRSKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  L   L           +P    T+ DP CG+G  L  A   V     
Sbjct: 180 KAGEFFTPAPVSRLLAKLA----------APQPGNTICDPACGSGSLLIQASQEVGSEN- 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     +GQE+   T A+    M +   ++     +       S    +    +RF
Sbjct: 229 -------FALYGQEVNGATWALARMNMFLHAKDA---ARIEWCDTLNSPALVEADHLQRF 278

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF       +DA        +  RF  G+P  S G   F+ H+    E+    
Sbjct: 279 DVVLANPPFSLDKWGAEDAA-----GDQYKRFWRGVPPKSKGDYAFITHMI---EIAKRQ 330

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + I   
Sbjct: 331 SGRVAVIVPHGVLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAILIFDR 387

Query: 413 RKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
            + E      R  V  I+A+  +T     GK + ++++    ++L+ Y +R E  ++S  
Sbjct: 388 SREEGGANTDRRDVLFIDASKEFTP----GKTQNVMDEVHVARVLETYATRAEVERYSHR 443

Query: 468 LDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                       + + R +      ++  +A ++ DI   +  
Sbjct: 444 ASPEEIAENGYNLNIPRYVDTFEPEEEIDVAAVQKDIQRIEAE 486


>gi|319775915|ref|YP_004138403.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|317450506|emb|CBY86723.1| Putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3047]
          Length = 514

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/530 (21%), Positives = 200/530 (37%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFNEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 337 AFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    ++ + +           V   +      +   +  L A I 
Sbjct: 443 ADKEDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|56808773|ref|ZP_00366489.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Streptococcus pyogenes M49 591]
 gi|209560056|ref|YP_002286528.1| Putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes NZ131]
 gi|209541257|gb|ACI61833.1| Putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes NZ131]
          Length = 526

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/566 (21%), Positives = 216/566 (38%), Gaps = 73/566 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+   ++  +    V G   Y      +   L      N         
Sbjct: 58  NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTIANVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D+  ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDNHIKKILD 438

Query: 455 IYVSREN-GKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT--WRKLSP 509
            Y SR+N  KFS +   D        + + R +     +    L  L   ++   ++++ 
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENGYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESF 535
            +      + + +          ++F
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELDTF 524


>gi|259507945|ref|ZP_05750845.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
 gi|259164440|gb|EEW48994.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
          Length = 523

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 109/544 (20%), Positives = 200/544 (36%), Gaps = 70/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
             L + +WK A+ L G    + +  VIL    L+ +  A    R+ + ++ +A G ++  
Sbjct: 2   KELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTDDQ 61

Query: 69  LESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIF--E 116
               +           F+         L            N    I    D+A       
Sbjct: 62  TAMLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIMVA 121

Query: 117 DFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSE 169
           +   S+T+ R+          L ++   F+              ++  +YE+ + +F   
Sbjct: 122 NPALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKFARA 181

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP                 L +        +YDP CG+GG        +  
Sbjct: 182 EGKRGGEFYTP-----------AGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKFL-- 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +H+K    +  +GQEL   T  +    + I  L +      +   + G T ++DL   
Sbjct: 229 -DAHNKDRTAIAVYGQELNERTWRMAKMNLAIHGLNA------NLGPRWGDTFARDLHPE 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  Y ++NPPF  K            +N E  R+  G+P  ++ +  ++ H+ +KL   
Sbjct: 282 MQADYIMANPPFNIKDWA---------RNEEDPRWRYGVPPKNNANYAWIQHIISKL--- 329

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GG A +V+++  + +     GE +IR  L+E DL+  +VALPT LF  T I   +W 
Sbjct: 330 -APGGSAGVVMANGSMSSNS--GGEGKIRAELVEADLVSCMVALPTQLFRSTGIPVCVWF 386

Query: 410 LSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +  KT       +R G+V  I+A +L   I    +  R ++D+   +I D + +     
Sbjct: 387 FAKDKTVGDQGAIDRTGQVLFIDARNLGHMI---DRAERALSDEDIAKIADTFHTWRGTP 443

Query: 464 FSRMLDYRTFG--YRRIKVLRPLRMSFILDK---TGLARLEADI--TWRKLSPLHQSFWL 516
            ++   Y           +       + L      G A +E D      K+  L +    
Sbjct: 444 SAKGRTYEDEAGFCYSATLEEIKDADYALTPGRYVGAAEIEDDGEPIDEKIERLKKELLD 503

Query: 517 DILK 520
              +
Sbjct: 504 QFDE 507


>gi|28199936|ref|NP_780250.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182682691|ref|YP_001830851.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa M23]
 gi|28058067|gb|AAO29899.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182632801|gb|ACB93577.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa M23]
 gi|307578974|gb|ADN62943.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 527

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/538 (22%), Positives = 211/538 (39%), Gaps = 75/538 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-------- 54
                 A L   IW+ A DL G     DF   +L     R +   L    +A        
Sbjct: 4   NKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRTGNG 63

Query: 55  -VREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF----- 107
            V   Y     +  +      V    FY   SE  +         +NL   ++       
Sbjct: 64  NVDFDYAQLSDAGAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIE 123

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------- 152
                     + K +F+D D +S+           K+ K    I   P T  +       
Sbjct: 124 RSAIGSDSEQDIKGLFDDLDVNSSKLGPTVPKRNEKLVKLLEAIGDLPLTSSEGGFTENT 183

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L++ + S   +   +F TP++V  L T + +     + K        +YD
Sbjct: 184 IDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK--------VYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L + +  +     H K+      +GQE+   T+ +C   M +  +  +    
Sbjct: 236 PACGSGSLLLNFVKVL----GHDKVRQG--FYGQEINLTTYNLCRINMFLHNVNYEK--- 286

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL+       + F   +SNPP+  KW+ D +A+          RF P   L
Sbjct: 287 --FHIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLIND-----PRFAPAGIL 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++
Sbjct: 340 APKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVD 392

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF T IAT + +L   K +        ++A+ L+         +  ++   
Sbjct: 393 AVIQLPADLFFGTTIATCIIVLKKSKGDNA---TLFMDASSLFVR----SGTKNKLSTAH 445

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +++ILD + +R++   F+R++D          I V   +  +   +   +  L  DI 
Sbjct: 446 QKKILDGFTARQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNRDIA 503


>gi|303252525|ref|ZP_07338688.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247274|ref|ZP_07529323.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648493|gb|EFL78686.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856247|gb|EFM88401.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 517

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 121/527 (22%), Positives = 211/527 (40%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E  KY A+ 
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             + ++    E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 124 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 236 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 284

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 445

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 446 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 492


>gi|94263106|ref|ZP_01286924.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93456477|gb|EAT06591.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 517

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/542 (18%), Positives = 193/542 (35%), Gaps = 74/542 (13%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE T + A+L   N +W  A+ + G     ++  V+L    L+ +  A +     +   
Sbjct: 1   MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDELEAT 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNA 111
                    D + +   A   F+   E     + +   +       +     +   + + 
Sbjct: 61  RDTEYTDPEDRDEYA--AANIFWVPKEARWDKVQAEAPQPTIGKTIDEAMVALERENPSL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
           + +         + +     L     K    I+L          +  +YE+ + +F +  
Sbjct: 119 RGVLPKDYSRPALDKTRLGEL----VKTVGDIDLQARQSGVQDPLGRVYEYFLGKFAAAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP+ VV L   ++           P     ++DP CG+GG    +   V   
Sbjct: 175 GKSGGEFYTPQCVVQLLVEMI----------EPYKG-RVFDPCCGSGGMFVQSERFVEAR 223

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IR +++D                 DL    
Sbjct: 224 GGRLG---DIAVYGQESNPTTWKLAKMNLAIRGIDAD------LGPHHADCFHNDLHKDL 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF           +         R+  G P  ++ +  ++ H  + L    
Sbjct: 275 KADYILANPPFNMSDWGGDRLRDDV-------RWKYGAPPANNANYAWIQHFIHHL---- 323

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G A  V+++  +    + S E  IR+ +++ D+I+ +VALP  LF+ T I   LW +
Sbjct: 324 APDGIAGFVMANGSMST--STSSEGAIRQAMIDRDMIDCMVALPGQLFYTTQIPVCLWFV 381

Query: 411 SNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461
           +  K         +R G+   I+A  +   I    +  R ++    + I  +Y +   ++
Sbjct: 382 TRSKKADPKRGLRDRSGETLFIDARRMGNLI---DRVHRELSTADIKTITGVYHNWRNQD 438

Query: 462 GKF---------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           G +         + + + +  GY    VL P R     D         +      + L +
Sbjct: 439 GDYEDKAGWWKSAALAEIQGHGY----VLTPGRYVGAEDVEDDGIPFEEKMTELSARLFE 494

Query: 513 SF 514
            F
Sbjct: 495 QF 496


>gi|302345836|ref|YP_003814189.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302149936|gb|ADK96198.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 501

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 95/469 (20%), Positives = 177/469 (37%), Gaps = 54/469 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IWK A+ L G+   +++  V+L    L+ +    E     +     
Sbjct: 1   MAKQNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDKFETKYQELV---- 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +    +A   F+   E   S +            I +  DNA  + E  + 
Sbjct: 57  -NNGEGFEEDRDEYMADNIFFVPQEARWSVVAKAAH----TPEIGTIIDNAMRLIEKENL 111

Query: 121 -------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                   +          L  +   F+ I++        ++   YE+ + +F     + 
Sbjct: 112 RLKGILPKNFARPELDKRRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L                 +YDP CG+GG    +   +     H
Sbjct: 172 AGEFYTPACIVQTLVEVL-----------KPYHGRVYDPACGSGGMFVQSAKFIER---H 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E+D             T   D     +  
Sbjct: 218 QGNIKDISVYGQDSNPTTWKMAQMNLAIRGIEAD------LGKFNADTFFDDQHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF           +         R+  G+P   + +  +L H+ + L    +  
Sbjct: 272 FIMANPPFNLSDWGADKLQDDV-------RWKFGIPPSGNANFAWLQHMIHHL----SPK 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L       GE  IR  +++ DLIE IVALP+ LF+ T I   LW L+  
Sbjct: 321 GKIGMVLANGSL--SSQTGGEGTIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRE 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           K  +++ K+  ++A ++ T +    +K R + +   R+I D +    +G
Sbjct: 379 K--KQKDKILFVDARNMGTMV---TRKLRELQEADIRKIADTFDKYSDG 422


>gi|257080965|ref|ZP_05575326.1| HsdM protein [Enterococcus faecalis E1Sol]
 gi|256988995|gb|EEU76297.1| HsdM protein [Enterococcus faecalis E1Sol]
          Length = 507

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 101/538 (18%), Positives = 203/538 (37%), Gaps = 51/538 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            + + +W  A+ L G    +++  V+L    L+ +  + E     + +   A      + 
Sbjct: 7   KIEDKLWAAADKLRGSMDASEYKNVVLGLIFLKYVSDSFEEKYEELTKDEYADPEDKDEY 66

Query: 70  --ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             ++   V   + +        T     T +     I   + + K +         + + 
Sbjct: 67  LADNIFWVPAEARWEKINRDAKTPKIGETIDEAMIAIEKENPSLKNVLPKNYSRPQLDK- 125

Query: 128 EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                L +     + I++   +      +   YE+ + +F S   +G  +F TPR VV L
Sbjct: 126 ---TRLGETVDLITNIKVGDSENRKTDTLGRTYEYFLGKFASAEGKGGGEFYTPRSVVSL 182

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 183 LVEMLEPYKG-----------RIYDPCCGSGGMFIQSEKFVE---KHQGKIGDISVYGQE 228

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +C   + IR ++       +       T   DL  G R  Y L+NPPF     
Sbjct: 229 FNPTTWQLCKMNLAIRGIDG------NIGTHNADTFQNDLHKGLRADYILANPPFNISDW 282

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +  +E         R+  G+P  ++ +  ++ H+ +KL       G A  VL++  + 
Sbjct: 283 GQEKLLED-------SRWKYGIPPKNNANYAWIQHMVSKL----APEGTAGFVLANGSMS 331

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----RRGKV 422
              +   E EIR+ L++NDL+E IV LP+ +F+ T I   LW ++  K ++     +G++
Sbjct: 332 T--STKEEFEIRKNLIKNDLVECIVTLPSQMFYSTQIPVCLWFVTKSKAKKNERNHQGEI 389

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
             I+A +         +  +  +++  +++ D Y + +     +  D   F      +  
Sbjct: 390 LFIDARNEGFMA---DRTTKEFSEEDIKKVADAYHAWKGTNDKKYTDVAGF-CSSASLET 445

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +IL       LE  +   + S   +     +   + +Q       E  +++++
Sbjct: 446 VKEQDYILTPGRYVGLEDKV---EDSEPFEEKMERLTTLLSEQFIQSHQLEEDIRKAL 500


>gi|330684125|gb|EGG95874.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis VCU121]
          Length = 518

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/550 (21%), Positives = 213/550 (38%), Gaps = 67/550 (12%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE        L   +W  A DL G+   ++F   IL     R L    E     A+ ++
Sbjct: 3   ITEKQRQQQQELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEAEVADALADE 62

Query: 59  YLAFGGSNIDL-------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
            + +  +  D        E  ++  GY       +S       N R ++E    +     
Sbjct: 63  DVTYEEAWEDDEYREDLKEELLENVGYYIEPQDLFSSMVKEIENQRFDIEHLAQAIRKVE 122

Query: 108 --------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    ++   +F D D SST       ++  L+ K+  + + +      +   ++ 
Sbjct: 123 TSTLGQDSEEDFIGLFSDMDLSSTRLGNTVKDRTALIGKVMIHLAELPFVHSDMEIDMLG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI RF +   + A +F TP+ V  +   ++    D L        R +YDPTCG+
Sbjct: 183 DAYEFLIGRFAANAGKKAGEFYTPQQVSKILAKIVTQGKDQL--------RNVYDPTCGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L                  +   +GQE    T+ +    ML+  +  +     + +I
Sbjct: 235 GSLLLRVGKETK----------VYRYNGQERNNTTYNLARMNMLLHDVRYE-----NFDI 279

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           Q   TL    F  ++F   ++NPP+  KW  D    + E        +G  L   S    
Sbjct: 280 QNADTLENPAFMEEKFDAVVANPPYSAKWSADSQFNDDE----RFSNYGK-LAPKSKADY 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + L    +  G  A+VL    LF G A   E  IR++L+E  + I+A++ LP 
Sbjct: 335 AFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYIDAVIGLPA 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T+I T + +   +K  E    V  I+A+  +   +N    +  + DD   QI+D 
Sbjct: 388 NIFYGTSIPTCILVF--KKCREANDNVVFIDASQSFEKGKN----QNHLTDDDVNQIVDT 441

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y  RE   K+S +            +  P  +    ++  +   +     + +       
Sbjct: 442 YSKRETIDKYSYVASLDDIKDNDYNLNIPRYVDTFEEEEPIDLDQVQQDLKNIDKEIADV 501

Query: 515 WLDILKPMMQ 524
             +I + + +
Sbjct: 502 ESEINEYLKE 511


>gi|253735165|ref|ZP_04869330.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726829|gb|EES95558.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 518

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 126/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-K 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E   S     +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYSDALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            +A+  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DIAYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|71904274|ref|YP_281077.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS6180]
 gi|306826650|ref|ZP_07459954.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
 gi|71803369|gb|AAX72722.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS6180]
 gi|304431177|gb|EFM34182.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
          Length = 526

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 121/564 (21%), Positives = 209/564 (37%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L       + E +
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLFAVCDNLEEHF 57

Query: 60  LAFGGSNIDLESFVKVAGYS------------FYNTSEYSLSTLGSTNTRNNL------- 100
             F  +    E+  +  G              ++     +   L      N         
Sbjct: 58  NTFTDAQKIFENAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGWED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDSHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|15675719|ref|NP_269893.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71911436|ref|YP_282986.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS5005]
 gi|13622937|gb|AAK34614.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71854218|gb|AAZ52241.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS5005]
          Length = 526

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/564 (21%), Positives = 209/564 (37%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+    +  +    V G   Y      +   L      N         
Sbjct: 58  NTFTEAQKIFEDAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPINFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D+  ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDNHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|326386412|ref|ZP_08208035.1| type I restriction-modification system, M subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209073|gb|EGD59867.1| type I restriction-modification system, M subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 505

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 197/502 (39%), Gaps = 51/502 (10%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESF 72
           W   +   G      +   IL    L+ +         + R+++    A     ++ E F
Sbjct: 15  WAACDTFRGAVDAGQYKDYILVMLFLKYISDQWNEHVESYRQQFGGDEARIRRRLERERF 74

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR---LEK 129
           V   G SFY+  E              LE+  ++     + +F + DF+S        ++
Sbjct: 75  VLPEGASFYDLHERRNEANIGELINEALEAIESTNIAKLEGVFRNIDFNSESNLGRVKDR 134

Query: 130 AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A +F TP  V  L 
Sbjct: 135 NRRLKNLLEDFAKPALDLRPSRVSEDIIGECYIYLISRFASDAGKKAGEFYTPSAVSGLL 194

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L           +P    T+ DP CG+G  L  A   V               +GQE+
Sbjct: 195 ARLA----------NPQPGNTICDPACGSGSLLIQASQQVG--------SDNFALYGQEV 236

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T A+    M +   ++     +       S    +     +F   L+NPPF      
Sbjct: 237 NGATWALARMNMFLHAKDA---ARIEWCDTLNSPALVEGDHLMKFDVVLANPPFSLDKWG 293

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            + A +         RF  G+P  S G   F+ H+    E+     GR A+++    LF 
Sbjct: 294 AEHAGD-----DPFKRFWRGIPPKSKGDYGFISHMI---EIAKRQTGRVAVIVPHGVLFR 345

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQ 423
              G GE  IR+ L+E +L++A++ LP +LF  T I   + +    + E      R  V 
Sbjct: 346 ---GGGEGTIRKALIEENLLDAVIGLPANLFTTTGIPVAILVFDRSREEGGANADRRDVL 402

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKV 480
            I+A+   T     GK + ++++     I++ Y +R E  K+S     +        + +
Sbjct: 403 FIDASRDCTP----GKTQNLLDEGHIDHIVETYRARAEEPKYSHRASLQEIAENDFNLNI 458

Query: 481 LRPLRMSFILDKTGLARLEADI 502
            R +      ++  +A ++ADI
Sbjct: 459 PRYVDTFEAEEEIDVAAVQADI 480


>gi|294339298|emb|CAZ87654.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
          Length = 521

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/473 (21%), Positives = 187/473 (39%), Gaps = 53/473 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-----F 62
              L   +W  A+ L       ++  ++L    ++ +  A +  R  ++ ++       +
Sbjct: 2   NQDLKKTLWATADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKAQFNDPASDLY 61

Query: 63  GGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                D E+ ++   Y      F+        TL       ++   I    D  +A    
Sbjct: 62  LPDAADQEAALEERDYYTMANVFWVPEAARWETLRGQAKFWDIGIRIDQALDAIEADNPR 121

Query: 118 FD--FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                     R + + G + ++    S I     T    V+  +YE+ + +F S   +  
Sbjct: 122 LKGILDKRFGRAQLEPGKMGELVDLVSTIGFGSGTHAKDVLGEVYEYFLGQFASAEGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  VV +   +L                 +YDP CG+GG    +   +   G   
Sbjct: 182 GQFYTPASVVKVLVEVLAPHKG-----------KVYDPCCGSGGMFVQSEKFIESHGGRF 230

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE  P T  +    + IR +      D +   +   T  +D     +  Y
Sbjct: 231 G---DISIYGQEANPTTWRLVAMNLAIRGM------DFNLGKEPADTFHRDQHPDLKADY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF          ++         R+  G P  S+ +  +L H+   L    N  G
Sbjct: 282 VLANPPFNISDWGGDRLLDD-------KRWLYGTPNPSNANYAWLQHILWHL----NASG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +A +VL++  + + +  + E  IR+ ++E D++E +VALP  LFF T I   LW L+  K
Sbjct: 331 QAGVVLANGSMSSNQ--NNEGVIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLTKSK 388

Query: 415 T---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGK 463
           T    +RRG+V  I+A  L    R EG+  R+ +D+   +I D  +  R++G+
Sbjct: 389 TAHGRDRRGEVLFIDARKLG---RMEGRVFRVFDDEDVAKIADTVHRWRQDGQ 438


>gi|281358278|ref|ZP_06244761.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis
           vadensis ATCC BAA-548]
 gi|281315368|gb|EFA99398.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis
           vadensis ATCC BAA-548]
          Length = 500

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 199/524 (37%), Gaps = 62/524 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E T +       IW  A  L G+    ++ +V+L    L+ +    +   + + E+  
Sbjct: 1   MSENTANIG-FEKEIWDAACILRGNMDAAEYKQVVLGLIFLKYISDKFDARYNELMEEDP 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
            F     +       +   F+  +E   + +       ++   I    D+A  + E  + 
Sbjct: 60  DFAEDRDEY-----TSCNVFFVPAEARWAKIAEAAHTPDIGRTI----DDAMILIEKENV 110

Query: 120 -----FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                     AR E     L  +   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 111 RLKGILPKNFARPELDKRRLGDVVDLFTNIKMKDHGDTRDILGRTYEYCLAMFAEQEGKK 170

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV      L   +             +YDP CG+GG    +   V +   H
Sbjct: 171 GGEFFTPACVVKTLVEFLKPYNG-----------RVYDPACGSGGMFVQSAKFVEN---H 216

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E+      +       T   D     +  
Sbjct: 217 QGNINNISVYGQDSNPTTWKMAQMNLAIRGIEA------NLGNYNADTFFNDCHPTLKAD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF               +  +  R+  G+P   + +  +L H+ + L       
Sbjct: 271 FVMANPPFNLSDWGA-------DRLKDDVRWKYGVPPSGNANFAWLQHMIHHL----APN 319

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L +     GE EIR+ ++E+DL+  IVA+PT LF+ T I   LW L   
Sbjct: 320 GKIGMVLANGSLSSQS--GGEGEIRKNIIEDDLVSCIVAMPTQLFYTTQIPVSLWFLCRN 377

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K  +++GK   I+A  + T +    +K R++ D   +++   + + ENG       F  +
Sbjct: 378 K--KQKGKTCFIDARKMGTMV---SRKLRMLTDADIQELAKTFDAYENGTLEDVKGFCAV 432

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                   +   +L P R   I ++        +   R  + L 
Sbjct: 433 ATTAQIAEQDY-ILTPGRYVGIEEQEDDGEPFDEKMERLTTELS 475


>gi|325121239|gb|ADY80762.1| type I site-specific deoxyribonuclease [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 523

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 113/540 (20%), Positives = 214/540 (39%), Gaps = 72/540 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           MT+       L   +W  A  L G     +F   IL     + L   +  + +A      
Sbjct: 1   MTQV--QLQELQKQLWNIANTLRGKMGADEFRDYILGLIFYKYLSEKVLNSANAELADEG 58

Query: 58  -KYLAFGGSNIDLESFVKV--------AGYSFYNTSEY---SLSTLGSTNTRNNLESYIA 105
            ++     SN + + F++          GY       +   +          ++L   + 
Sbjct: 59  IEFPDLDASNEEHQEFLEALKQESLENMGYFLEPNQLFHSIAERAKKEEFILDDLIKTLK 118

Query: 106 SFS---------DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           S           D+   +FED D +ST       ++  L+ K+  +   I+         
Sbjct: 119 SIEQSTQDADSADDFAHLFEDLDLTSTKLGNNANDRNELIAKVIIHLDAIDFDISNTESD 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F S   + A +F TP+ V  L   ++    + L        R++YDPT
Sbjct: 179 VLGDAYEYLIGEFASGAGKKAGEFYTPQMVSTLLARIVTQGKERL--------RSVYDPT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      V +             +GQE+   T+ +    M++  +         
Sbjct: 231 CGSGSLLLRVKREVGNHVD--------AIYGQEMNRTTYNLARMNMILHDVHFSK----- 277

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            +I+Q  TL K     K+F   ++NPPF  KW  D   +  E +    G+  P     S 
Sbjct: 278 FDIRQEDTLKKPQHLDKKFDAIVANPPFSAKWSADPLFMNDE-RFKSYGKLAP----SSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVA 392
             M F+ H+  +L    +  G  A+VL    LF G +   E  IR++++E  ++I+ I+ 
Sbjct: 333 ADMAFVQHMLYQL----DEHGTMAVVLPHGVLFRGSS---EGHIRQFMIEQMNVIDTIIG 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T + +L  +K  E +  +  I+A++ +   +N    +  +  +    I
Sbjct: 386 LPANIFYGTSIPTCILVL--KKNREHKDNILFIDASNEFEKQKN----QNKLLPEHLDNI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +  Y +R+N  K++ +   +        + + R +      D+  L  +   +   ++  
Sbjct: 440 IGAYENRQNIDKYAYVATLQEVKDNDFNLNIPRYVDTFEADDEIDLDAIAQALQTLEIES 499


>gi|323189849|gb|EFZ75127.1| type I restriction-modification system, M subunit [Escherichia coli
           RN587/1]
          Length = 518

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/530 (22%), Positives = 205/530 (38%), Gaps = 66/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MTSL-QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D++         F   S+   +     NT + L + + S          
Sbjct: 60  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAY 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++L   +     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL++  F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +L+  K +      Q I+A+ L+    N      ++ D    QI+ ++
Sbjct: 389 LFFGTTIAVNILVLAKNKKDTT---TQFIDASGLFKKETN----NNVLLDAHIEQIMAVF 441

Query: 457 VSREN-GKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            S+EN   F++ +           + V   +      +   +A+L A++ 
Sbjct: 442 DSKENVVHFAKSVSLEEVVAKEYNLSVSSYVEAKDNREVVDIAQLNAELK 491


>gi|242279139|ref|YP_002991268.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242122033|gb|ACS79729.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 856

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/533 (21%), Positives = 215/533 (40%), Gaps = 53/533 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   + +SL   ++K  + L G+ + +++ + I     L+RL       R+ + +   
Sbjct: 1   MTQK-LTLSSLERKLFKACDILRGNMEASEYKEYIFGMLFLKRLSDQFHKDRAILAQDLA 59

Query: 61  AFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGS------TNTRNNLESYIASFSDNAKA 113
           A G       + + K   Y+FY         +        +     L +   +  +  + 
Sbjct: 60  AKGIPEEAKAALLDKRNQYTFYVPESARWEQIQHIKKDVGSGLNKALAAIEEANPETLQD 119

Query: 114 IFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171
           + +  +F+  +  R      L +  ++F+ I L  D      ++   YE LI+ F     
Sbjct: 120 VLKSINFNRKVGQRTLDDSTLVEFIQHFNDIPLSNDDFEFPDLLGAAYEFLIKHFADSAG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV     ++           P     +YDPT G+GG L  +  +V +CG
Sbjct: 180 KKGGEFYTPTEVVRTLVEII----------EPQEGMGIYDPTAGSGGMLIQSAKYVQECG 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-----DLSKNIQQGSTLSKDL 286
            + K    L   GQEL   T ++C   M++  + S   R         ++++    +   
Sbjct: 230 GNVKN---LSLAGQELAGSTWSMCKMNMILHGIVSQDIRQEDVLKRPLHLKKDPDQNNQN 286

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANK 345
              K +   ++NPPF + + K +   +         RF   LP       ++F+ H+   
Sbjct: 287 HELKTWDRVIANPPFSQNYSKKEMLFKD--------RFDVWLPTTGKKADLMFVQHMVAV 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G+ A+++    LF    G  E   R   +E  ++EAIV LP+ LF+ T I  
Sbjct: 339 LK----NNGKCAVIMPHGVLFR---GGEERNCREKFIEKGILEAIVGLPSGLFYGTGIPA 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKF 464
            + +L+     +R+ +V  INA   +     EGK +  +  +   +I  +Y +R E  K+
Sbjct: 392 CILVLNKEGAADRK-EVLFINADREY----KEGKNQNKLRPEDIAKITHVYRNRLEVDKY 446

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
           SRM+  +          + R +  S   +   + A L   +   ++  L   F
Sbjct: 447 SRMVPVQELEKEDFNCNIRRYVDNSPPPEPHDVKAHLHGGVPVSEVDTLKDDF 499


>gi|50914977|ref|YP_060949.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|50904051|gb|AAT87766.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
          Length = 526

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/564 (21%), Positives = 210/564 (37%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        +++ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLDQHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+   ++  +    V G   Y      +   L      N         
Sbjct: 58  NTFTDAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             S I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFSDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 GNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDSHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|332292955|ref|YP_004431564.1| type I restriction-modification system, M subunit [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171041|gb|AEE20296.1| type I restriction-modification system, M subunit [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 531

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 203/549 (36%), Gaps = 84/549 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M E   +   L   +W  A  L G     DF   IL F   + L   ++   + + E   
Sbjct: 1   MAED--AKQQLEQQLWNIANTLRGKMDADDFRDYILGFIFYKYLSTKMDMYANRILEPDG 58

Query: 58  -KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLST-------LGSTNTRNNLESY 103
             +    G   +      +   +      F   SE              +     +L   
Sbjct: 59  LTFQQVEGHEQEAAYMEAIKDAALDKLGYFLLPSELFSELARRGNAGCKNQFILGDLAKV 118

Query: 104 IASFSDNAKAI---------FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVP 151
           +     +             FED D +S+       +K  L+ K+  +   I+       
Sbjct: 119 LTHIEQSTMGSESEEDFGNLFEDLDLTSSKLGKSENDKNELIVKVLSHLDEIDFDIANTE 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F S   + A +F TP+ V ++   L+    D L        +++YD
Sbjct: 179 SDLLGDAYEYLIGQFASGAGKKAGEFYTPQQVSNILAQLVTVGKDRL--------KSVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      V +         +   +GQE+ P T+ +C   M++  +       
Sbjct: 231 PTCGSGSLLLRVAKQVKE---------VSAFYGQEMNPTTYNLCRMNMIMHDVHY----- 276

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +I+   TL +     +RF   ++NPPF  KW      +     +     +G  L   
Sbjct: 277 KRFDIKNEDTLERPQHLDQRFEAIVANPPFSAKWSASPLFM----SDDRFANYGK-LAPS 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S     F+ H+ ++L       G  A+VL    LF G A   E  IR++L+++ + ++A+
Sbjct: 332 SKADFAFVQHMVHQL----ADNGTMAVVLPHGVLFRGGA---EGHIRKYLIKDRNYLDAV 384

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K    +  +  I+ +  +  +    K +  + ++   
Sbjct: 385 IGLPANIFYGTSIPTCILVL--KKERVHKDNILFIDGSQHFEKV----KTQNYLREEDIT 438

Query: 451 QILDIYVSR------------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +++D Y S                K+S +            +  P  +    ++  +   
Sbjct: 439 KLIDTYKSYTSHPEPAEGSPATIDKYSYVATLSEIAENDYNLNIPRYVDTFEEEEAVDLT 498

Query: 499 EADITWRKL 507
                 + +
Sbjct: 499 AVSKALKAI 507


>gi|197247972|ref|YP_002149445.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211675|gb|ACH49072.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 499

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 115/512 (22%), Positives = 203/512 (39%), Gaps = 52/512 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +   +   E       + 
Sbjct: 5   NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFADAMESVGDAELAK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             +   +++     +         +G      +    I   +     IF D  +++   R
Sbjct: 65  GKMFHRIQIPENCHWRDVFAETKDIGQA--LKDSFRGIELANPKLHGIFGDASWTNK-ER 121

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR +V L
Sbjct: 122 LSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDP CGTGG L + ++HV + G     P +L   GQE
Sbjct: 181 MVNIL----------DPKAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302
               T A+    + +   E         +I +G TL +  F      + F   ++NPPF 
Sbjct: 228 KNLTTEAIARMNLFLHGQED-------FDIVRGDTLREPKFLQSDRLETFDCVVANPPFS 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K             N   GR   GL   ++G   ++ H+   L    N  GR A+VL  
Sbjct: 281 LKEWGYDL-----WSNDPYGRKQYGLAPKTNGDFAWVQHMFASL----NDNGRMAVVLPH 331

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E  IR  LL+ + I AI+ + ++LF+ T I   + +L   +    +  V
Sbjct: 332 GVLFRGGA---EGVIRTKLLKENRIVAIIGVASNLFYGTGIPACILVLRKSRPATHKDHV 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--------SRENGKFSRMLDYRTFG 474
            +INA +++T  R     +  +++ Q   I  IY         ++E    +R +  +   
Sbjct: 389 LIINAEEIYTKGRA----QNTLSNKQADDIYQIYHDQAQQGPDAKEIEGVARWVPLKEIE 444

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                +     +   L++  +   EA   +++
Sbjct: 445 ENDFNLNIARYVQKPLEEETITVEEALKDFQR 476


>gi|120400562|gb|ABM21473.1| HsdM2 [Staphylococcus aureus]
          Length = 518

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  EITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDEQFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYGATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|148827354|ref|YP_001292107.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittGG]
 gi|148718596|gb|ABQ99723.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittGG]
          Length = 514

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 201/530 (37%), Gaps = 65/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   +   +  +  NL + +            
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNLAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GFPSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       +I  G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALG 281

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F   K F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 282 NTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE-----RFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  +
Sbjct: 337 AFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QIL ++
Sbjct: 390 LFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQILKLF 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +++    ++ + +           V   +      +   +  L A I 
Sbjct: 443 ADKQDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 492


>gi|302333478|gb|ADL23671.1| Type I restriction-modification system methyltransferase subunit,
           HsdM_2 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 518

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWTDEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L                  +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVGKETK----------VYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K+ ++   V  I+A++ +   +N    +  + D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKSRQQDDNVLFIDASNDFEKGKN----QNHLTDTQVDRIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +      +   L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEEPIDLEQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|187930243|ref|YP_001900730.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|187727133|gb|ACD28298.1| N-6 DNA methylase [Ralstonia pickettii 12J]
          Length = 503

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 123/523 (23%), Positives = 218/523 (41%), Gaps = 52/523 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           S   L +++W+ A  L G     D+ + I P    +R+     E  +SA+ E       +
Sbjct: 5   SQQELESYLWRAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYQSALVESDGDLSYA 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                   ++     +N    +   +GS   +  + +   +  D    IF D  +++   
Sbjct: 65  QFAENHRFQIPEGVHWNDVRQTPKNVGSA-IQKAMRAIELANPDMLDGIFGDASWTNR-E 122

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL    L   + ++FS   L    VP+  + N YE+LI++F  +    A +F T R VVH
Sbjct: 123 RLPDETLK-DLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVVH 181

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L  +GQ
Sbjct: 182 LMTQLL----------APLAGESIYDPTCGTGGMLISALDEVKRSGGEYRT---LTLYGQ 228

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPF 301
           E    T ++    + +  +       +   I +G TL++         ++F   L+NPP+
Sbjct: 229 ERNLITSSIARMNLFLHGV-------VDFEIIRGDTLAEPKHIEGDRLRQFDVILANPPY 281

Query: 302 GKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             K W+++  + +K       GR   G P        F  H+   L       GR A++ 
Sbjct: 282 SIKQWDREAWSSDKW------GRNTLGTPPQGRADYAFHQHILTSL----TTKGRCAVLW 331

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + RKT ER+G
Sbjct: 332 PHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCVVICNRRKTSERKG 387

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIK 479
           KV  I+A +  T  R +      +  + +R+IL  Y    +   F+++      G     
Sbjct: 388 KVIFIDAVNEVTRERAQS----FLKPEHQRRILAAYEVFADEPGFAKVATLAEIGGNGGN 443

Query: 480 VLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +  PL +      +   +    +     W K     ++FW  +
Sbjct: 444 LSIPLYVKRIAAVVATDSNGDAVSLRSAWDKWQTDGRTFWQQM 486


>gi|57505320|ref|ZP_00371249.1| type I restriction-modification system, M subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016456|gb|EAL53241.1| type I restriction-modification system, M subunit [Campylobacter
           upsaliensis RM3195]
          Length = 533

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/541 (22%), Positives = 212/541 (39%), Gaps = 80/541 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------- 56
                +L + IWK A  L G+    DF   +L     R +   L    +A +        
Sbjct: 9   QAQRDALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISSTGGR 68

Query: 57  ------EKYLAFGGSNIDL-----ESFVKVAGYSFYNTSEYS----LSTLGSTNTRNNLE 101
                   Y      +ID+     E+ +   G+  Y +  +          +TN    L 
Sbjct: 69  GGGGEPNSYENLSDKDIDVNEKSREAIIDAKGFLIYPSQLFCNVLKAHAQDTTNLNQTLS 128

Query: 102 SYIASFSDN---------AKAIFEDFDFSSTI----ARLEKAGLLYKICKNFSGIELHPD 148
           +  A    +          K +F D D +S+       L++   LY++ +  + ++LH +
Sbjct: 129 NVFAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEKLYQVMQEIATLDLHYN 188

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   + YE+L+R +  +  +   +F TP++V HL   L+     ++ K        
Sbjct: 189 DNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSHLLARLVSYGKQSVNK-------- 240

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      +                GQE+ P ++ +C   ML+  +  + 
Sbjct: 241 VYDPACGSGSLLLQFAKVLGIDNIKQG------FFGQEINPTSYNLCRINMLLHDIGFE- 293

Query: 269 RRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               + +I  G TL +      + F   +SNPP+  KW  D D      K     RF P 
Sbjct: 294 ----NFDIALGDTLLEPKHADDEPFDAIVSNPPYSTKWIGDDDL-----KLINDPRFAPA 344

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F MH+ + L    +  G  AIV     L+    G  E +IR++L++ +
Sbjct: 345 GVLAPKSYADLAFTMHMLSWL----SPSGTCAIVEFPGVLYR---GGKEKQIRKYLIDQN 397

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LFF TNIAT + +L   K   +      I+A++ +T I     K+ I+ 
Sbjct: 398 FIDTIIQLPENLFFGTNIATSIIVLKKNK---QSVATLFIDASEQFTKIT----KKNILE 450

Query: 446 DDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRM--SFILDKTGLARLEADI 502
                 I++ Y  RE+   FSR++           +     +      +   +  L A+I
Sbjct: 451 STHINTIVEAYAKREDIEHFSRLVSLEEIRANDYNLSTSTYITPKDTREVINITTLNAEI 510

Query: 503 T 503
            
Sbjct: 511 A 511


>gi|307260748|ref|ZP_07542437.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869587|gb|EFN01375.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 516

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 121/527 (22%), Positives = 213/527 (40%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E  KY A+ 
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             + ++    E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 124 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G+TL
Sbjct: 236 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGNTL 284

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWIGDGDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H+ + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHVLSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 445

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 446 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 492


>gi|238855603|ref|ZP_04645904.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|238831747|gb|EEQ24083.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
          Length = 479

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/525 (21%), Positives = 202/525 (38%), Gaps = 67/525 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   +       + +W   ++L G    +++  V+L    L+ +  + E  R  + +   
Sbjct: 1   MASKSNDL-KFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLKS-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
            +     D ++++  A   F+ + E   + +             ++    I   +++ + 
Sbjct: 58  DYPEDAEDSDAYL--ADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
           I      S  + R      L  +    S I +      +  ++  +YE+ +++F S   +
Sbjct: 116 ILSKNYESPDLDR----SRLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV     ++                T+YDP CG+GG    +   V +   
Sbjct: 172 NGGEFYTPRSVVKTLVEMVEPFKG-----------TVYDPCCGSGGMFVQSEQFVQE--- 217

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      L  +GQE  P T  +    + IR +      D +    Q  T + DL  G  F
Sbjct: 218 HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNNFGAHQADTFTNDLHKGTHF 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y L+NPPF  K    +       K  +  R+  G+P   + +  ++ H+ +KL    N 
Sbjct: 272 DYILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKL----NP 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL++  L        E  IR+ LLE D I+AIVALP  +F+ T I   LW +  
Sbjct: 321 DGKAGFVLANGALSTTL--KEELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDM 378

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------- 459
            K      +RRG+   I+A +L   +    +  R  +++  ++I D Y +          
Sbjct: 379 NKNSEDERDRRGETLFIDARELGEMV---DRTHREFSNEDIKKIADTYHAYRGTNKQKYE 435

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           +   F ++            VL P R   + ++           W
Sbjct: 436 DVAGFCKIAKLDEIAKNDY-VLTPGRYVGLAEQEDDGEPYEVKMW 479


>gi|87161919|ref|YP_494443.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|151221912|ref|YP_001332734.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|87127893|gb|ABD22407.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|150374712|dbj|BAF67972.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
          Length = 579

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|30250443|ref|NP_842513.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30139284|emb|CAD86436.1| possible type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 504

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/511 (22%), Positives = 205/511 (40%), Gaps = 56/511 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YL 60
           S   L +++W  A  L G     D+ + I P    +R+    +    A          Y 
Sbjct: 5   SQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALANSGGDLSYA 64

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            F  +      F   AG  + +  +   +   +   +  + +  ++  D    IF D  +
Sbjct: 65  QFAEN----HRFQIPAGAHWNDVRQTPKNVGAA--IQKAMRAIESANPDLLDGIFGDAPW 118

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    L   + ++FS   L    VP+  + N YE+LI++F  +    A +F T 
Sbjct: 119 TNR-ERLPDETLK-NLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L
Sbjct: 177 RTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRAGGEYRT---L 223

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE    T ++    + +  +E          I +G TL++         ++F   L
Sbjct: 224 KLYGQERNLITSSIARMNLFLHGVED-------FEIIRGDTLAEPKHIEGDRLRQFDVIL 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K    +        + + GR   G P        F  H+   L       GR 
Sbjct: 277 ANPPYSIKQWNREA-----WSSDKWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRC 327

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +K  
Sbjct: 328 AVLWPHGVLFRNE----EQSMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKAA 383

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
            R+GKV  I+A +     R +      +  + +++IL  Y +  +   F+++      G 
Sbjct: 384 ARKGKVIFIDAVNEVARERAQS----FLKPEHQQRILTAYKTFADVPGFAKVATLAEIGA 439

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRK 506
               +  PL +  I         +  ++ R 
Sbjct: 440 NAGNLSIPLYVKRIAAAIATDSNDDAVSLRS 470


>gi|307245102|ref|ZP_07527195.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254057|ref|ZP_07535904.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258513|ref|ZP_07540250.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853991|gb|EFM86203.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862982|gb|EFM94929.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867417|gb|EFM99268.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 515

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/527 (23%), Positives = 211/527 (40%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E  KY A+ 
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             + ++    E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + +  +G+     +     +  + YE L
Sbjct: 124 SENDIKELFADFDTTSNRLGNTVEDKNKRLTAVLQGVAGLPFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 236 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 284

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWVGDGDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFGDK 445

Query: 460 EN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +     +M+D +          V   +      +   ++ L A+I+
Sbjct: 446 ADVDHLVKMVDNQAIADNDYNLAVSSYVEAKDEREVINISELNAEIS 492


>gi|285959361|gb|ADC39983.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 518

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/533 (20%), Positives = 207/533 (38%), Gaps = 69/533 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGG 64
              A L   +W  A DL G+   ++F   IL     R L    E   + +  E  +++  
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 65  SNIDLE-------SFVKVAGYSFYNTSEYSLSTLG---STNTRNNLESYIASFSDNAKAI 114
           +  D E         + + G+       +S         T    +L   I    ++ +  
Sbjct: 69  AWEDEEYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128

Query: 115 ---------FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                    F D D ++T        +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNATRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNKPNL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VGREA----------DVRFYYGQEYNNTTFNLARMNMLLHDVNY-----TRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G++F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGYGK-----LAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +   +N    + ++ D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEKGKN----QNLLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             KFS +            +  P    ++        ++ D+  ++L+ + + 
Sbjct: 448 IDKFSYVATLDEIKDNDYNLNIP---RYVDTFEEEEPIDLDLVQQQLTDIDKE 497


>gi|288817340|ref|YP_003431687.1| type I restriction-modification system methyltransferase subunit
           [Hydrogenobacter thermophilus TK-6]
 gi|288786739|dbj|BAI68486.1| type I restriction-modification system methyltransferase subunit
           [Hydrogenobacter thermophilus TK-6]
 gi|308750947|gb|ADO44430.1| type I restriction-modification system, M subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 813

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/583 (19%), Positives = 232/583 (39%), Gaps = 58/583 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++K A+ L G    +++ + I     L+R+    +  R  + ++Y 
Sbjct: 1   MEKKKITLRELETHLFKAADILRGKMDASEYKEYIFGMLFLKRMSDVFDEEREKLFKEYK 60

Query: 61  AFGGSNIDLESFVKVAG---YSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAK 112
             G S+ +++  ++       +F+   +     +        N  N   + +   +   +
Sbjct: 61  NLGYSDEEIKEILEDPNIYSETFFVPEKARWEYILTLKEDVGNQLNKALAALEEANPELE 120

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            + +  DF++   +   K   L  +  +F+   L  +      ++   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLIHHFNKYRLRNEDFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P     +YDPT G+GGFL +A  +V + 
Sbjct: 181 GKKGGEFYTPPSVKTLMVRLV----------KPKEGMRIYDPTVGSGGFLIEARQYVEEK 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQE    T ++C   M++  +           I+   TL+   F   
Sbjct: 231 GQN---PKNLALYGQENNGVTWSICKMNMILHGI-------PDAQIENEDTLTNPKFVEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K+F   L+NPPF + + +            E  ++G          ++FL H+   L
Sbjct: 281 GYIKQFDIVLANPPFSQNYTR------ANMHFPERFKYGFTPETGKKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++++DLI+AI+ LP  LF+ T I   
Sbjct: 335 KP----DGIMATVMPHGVLFRGGQ---EKVIREGIVKDDLIQAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFS 465
           + +++ RK +  + K+  INA   +   RN    +  +  +   +I+ ++ +  E  K+S
Sbjct: 388 IIVINKRKPDHLKNKILFINADREYGEGRN----QNYLRPEDIEKIVTVFDNNLEIPKYS 443

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLS---PLHQSFWLDIL 519
           R++D +        + + R +  S   +   +   +   I  ++L    P  + F + + 
Sbjct: 444 RLVDIKEIEENDFNLNIRRYVDNSPEPEIENVHYHINGYIPKQELELYKPQMKKFNISLD 503

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
              ++          ++ E  K  E         +++ + F  
Sbjct: 504 NLFIEIDKDSLDFIPYINEKSKIKEVIENYEGVKQTYDIHFQK 546


>gi|271968782|ref|YP_003342978.1| Site-specific DNA-methyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270511957|gb|ACZ90235.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptosporangium roseum DSM 43021]
          Length = 544

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/483 (20%), Positives = 175/483 (36%), Gaps = 62/483 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   + + +WK A+ L G      + + +L    L+ +  A    R+ +           
Sbjct: 19  STKEIQDILWKAADKLRGSMDAAQYKEFVLGLVFLKYVSDAFAERRATLAADPELAELPE 78

Query: 67  IDLESFVKVAGYS-----FYNTSEYSLSTLGSTNT---------RNNLESYIASFSDNAK 112
               +F++          F+         +               ++    I   +    
Sbjct: 79  HRRAAFLEEKDEYTEANVFWVPPPARWDYISDNAQSAVDGVGKLLDDAMDAIMKENPTLT 138

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEV 170
            +         + +      L ++    S      H       V+   YE+ + RF    
Sbjct: 139 GVLPKIFNRDNVDK----KRLKELVDLISDARFTGHGARPAQDVLGETYEYFLERFARAE 194

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP  VV L   +L   +             +YDP CG+GG    A   V   
Sbjct: 195 GKRAGEFYTPASVVRLLVEILEPYEG-----------RVYDPCCGSGGMFVQAGKFVTAH 243

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +  +GQE    T  +    + I  ++     D     +   T   D     
Sbjct: 244 AGRDHTHD-IAVYGQETNERTWRLAKMNLAIHGMDPKGVGD-----RWADTFDDDKLPDL 297

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + ++NPPF               +N    R+  G+P  S+ +  +L H+  KL    
Sbjct: 298 KADFVMANPPFNLSDWA---------RNVGDRRWMYGVPPQSNANYAWLQHIVFKL---- 344

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G A +VL++  + + +  SGE EIR  L++ DL+  +VALP +LF  T I   LW L
Sbjct: 345 GERGSAGVVLANGSMASKQ--SGEGEIRTKLVQADLVACMVALPGNLFRTTAIPACLWFL 402

Query: 411 SNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +  KT        ERRG+V  I+A +L T +    +  RI+ D+   +I D Y +    +
Sbjct: 403 TKDKTPQGAKALAERRGEVLFIDARNLGTMV---DRTERILTDEDLARIADTYHAWRGTR 459

Query: 464 FSR 466
            +R
Sbjct: 460 SAR 462


>gi|85711390|ref|ZP_01042449.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Idiomarina baltica OS145]
 gi|85694891|gb|EAQ32830.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Idiomarina baltica OS145]
          Length = 511

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/547 (21%), Positives = 212/547 (38%), Gaps = 58/547 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T S  S+   +W   +   G      +   +L    L+ +    +        ++ 
Sbjct: 1   MT--TISQDSINKALWNACDTFRGTINAGTYQDFLLTMLFLKYISDVWQDHYDQYVAQHG 58

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKA 113
                  ++   E FV     SFY   +              L +   +      D  K+
Sbjct: 59  DEPELIEEMMKSERFVLPRDASFYALYDRRYEPGNGERIDQALHAIEEANGTKLKDAGKS 118

Query: 114 IFEDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F++     EK    +L  + ++F+   + L P  V    V+ N YE+LI+ F +
Sbjct: 119 VFQDISFNTDKLGEEKQKNDILRHLLEDFAKPELNLKPSRVGSLDVIGNAYEYLIKHFAA 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP ++  L   LL           P    ++ DP CG+G  L      V 
Sbjct: 179 SGGQKAGEFYTPPEISDLIAELL----------DPQPGDSICDPACGSGSLLMKCGRKVI 228

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          GQE    T ++    M +   +       +  I+ G T+      
Sbjct: 229 ANHD----SKEYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLL 277

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K      F    +NPPF        DA     +N +  RF  G+P  + G   F++H+ 
Sbjct: 278 DKNGDLMLFDIVTANPPFSLDKWGHDDA-----ENDKFSRFRRGVPPKTKGDYAFILHMI 332

Query: 344 NKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             L+   +   GGR  +V+    LF    GS E +IR+ L++ +L++A++ LP  LF+ T
Sbjct: 333 ETLKPASSSKRGGRMGVVVPHGVLFR---GSKEGKIRQQLIDENLLDAVIGLPEKLFYGT 389

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   + +    K+++   KV  I+A+  + S +N    +  ++DD  ++I+D Y SRE 
Sbjct: 390 GIPAAILVFKKSKSDD---KVLFIDASREFKSGKN----QNQLSDDNIQKIVDTYHSRET 442

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +   +  +KL    +     + K
Sbjct: 443 VEKYSYLATLGEIQENDYNLNIPRYVDTFEEEEEIDLMAVRVERQKLKVELEELESQMEK 502

Query: 521 PMMQQIY 527
            + +  Y
Sbjct: 503 YLEELGY 509


>gi|320528569|ref|ZP_08029726.1| type I restriction-modification system, M subunit [Solobacterium
           moorei F0204]
 gi|320131155|gb|EFW23728.1| type I restriction-modification system, M subunit [Solobacterium
           moorei F0204]
          Length = 521

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/549 (20%), Positives = 207/549 (37%), Gaps = 68/549 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                A L   +W  A DL G    ++F   IL     R L   L        E      
Sbjct: 7   QAKQQAELHTQLWAMANDLRGSMDASEFKNYILGLIFYRYLSDKLSNFVDEELEDDDISY 66

Query: 64  GSNIDLESF--------VKVAGYSFYNTSEYSLST--LGSTNTRNNLESYIA-------- 105
                 E F        V   G   Y     +L +  +   N +    S +A        
Sbjct: 67  ADAWKDEDFKQDIIDALVDDEGGLGYVIEPANLWSTLIDKINVKQFDISMLAKAVNDLTE 126

Query: 106 -----SFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                    + + +F+D D +++       +++ L+ K+      I  H +     V+ +
Sbjct: 127 STIGLGSQRDFENLFDDMDLNASKLGKSEADRSVLIAKVMLKIDDINFHYEDAEIDVLGD 186

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  L   L+      L        + +YDPTCG+G
Sbjct: 187 AYEYLIGQFAASAGKKAGEFYTPQQVSKLLAKLVTVGKSKL--------KNVYDPTCGSG 238

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L              K   ++  +GQE    T+ +    ML+  +  +     + +  
Sbjct: 239 SLLLRVA----------KETDVVSFYGQEKVSTTYNLARMNMLLHGVPFNHFDIENNDTL 288

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +      +     RF   ++NPP+  KW  D   ++ E +    G+  P     S     
Sbjct: 289 EHP---NEEHMKMRFDAVVANPPYSAKWSADPKFLDDE-RFSAYGKLAP----KSKADYA 340

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396
           F+ H+   L    +  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +
Sbjct: 341 FIQHMLYLL----DDAGTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGLPAN 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + +    KT +    V  I+A+  + S +N+ +    + D   ++I+D Y
Sbjct: 394 LFFGTSIPTCVLVFKKCKTHD---DVFFIDASKEFESGKNQNR----LTDANIQKIMDTY 446

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           ++R++  K++              +  P  +    ++  +         ++L        
Sbjct: 447 LARKDVEKYAHCASLEEIDENDYNLNIPRYVDTFEEEEEIDIHAVMKEIKELEAKRDELD 506

Query: 516 LDILKPMMQ 524
            +I   + +
Sbjct: 507 KEIDVYLKE 515


>gi|150401947|ref|YP_001329241.1| N-6 DNA methylase [Methanococcus maripaludis C7]
 gi|150032977|gb|ABR65090.1| N-6 DNA methylase [Methanococcus maripaludis C7]
          Length = 501

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 108/544 (19%), Positives = 203/544 (37%), Gaps = 61/544 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +WK A+ L G+   +D+  V+L    L+ +  A E   + +  +           E
Sbjct: 6   FEEDLWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYNQLLLEVKDGADPEDPDE 65

Query: 71  SFVKVAGYS-FYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKAIFEDFDFSS 122
               + G S F+   E     +      +++          I   +   K I      + 
Sbjct: 66  YKSNIHGKSVFWVPKESRWEYIQERAKLDSIGVVIDGAMELIEKENSRLKGILPKEYANP 125

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T+ +      L ++      I L        ++  +YE+ + +F S   +   +F TP  
Sbjct: 126 TLDK----RRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPDC 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++                 +YDP CG+GG    +   V +   H      +  
Sbjct: 182 IVKLLVEMIEPYKG-----------RVYDPCCGSGGMFVQSEKFVIE---HSGKINDISI 227

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    + IR +E+D         + G +   DL    +  + L+NPPF 
Sbjct: 228 YGQESNPTTWKLANMNLAIRGIEADI--------KFGDSFHNDLHPDLKADFILANPPFN 279

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                     +         R+  G+P   + +  ++ H+ + L    +  G A  VL++
Sbjct: 280 ISDWGGNLLTDD-------KRWKHGVPPTGNANFAWVQHMIHHL----STTGIAGFVLAN 328

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             +      S E EIR  ++   L++AIVALP+ LF+ T I   LW +   K E R+G+ 
Sbjct: 329 GSM--SSNTSSEGEIRTNIINAGLVDAIVALPSQLFYNTQIPACLWFIRRGK-EVRKGET 385

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
             I+A ++   I    +K R + ++  ++I  +Y S  NG+          GY  +    
Sbjct: 386 LFIDAREMGEMI---SRKNRSLTEEDIKKIAGVYHSWRNGE----------GYEDVPGFC 432

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
                  ++K G           K        + + ++ ++ ++         + + IK 
Sbjct: 433 KSSDISDIEKQGFILTPGRYVGFKEEEDDGIPFEEKMESLVSELKKTFEEGEILDKRIKE 492

Query: 543 NEAK 546
           N  K
Sbjct: 493 NLKK 496


>gi|254303926|ref|ZP_04971284.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324118|gb|EDK89368.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 520

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/552 (20%), Positives = 209/552 (37%), Gaps = 69/552 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---------LEPTRS 53
           +     A L   IW  A  L G     DF + +L     R +             E   +
Sbjct: 4   KKEQERAELHRTIWGIANALRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEFEAENT 63

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-- 111
                 L    + +  E  ++  G+ F   SE  ++     +   NL   + +   N   
Sbjct: 64  DFDYSLLNDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIEN 122

Query: 112 -----------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMS 156
                      K +F+D D +S       A     +    +G+ ++      +       
Sbjct: 123 SASGTESESDLKGLFDDIDVNSNKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTIDAFG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG+
Sbjct: 183 DAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +      +         GQE+   T+ +C   M +  ++ D       +I
Sbjct: 235 GSLLLKFAKILGKDNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FDI 283

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL +      + F   +SNPP+  KWE D   +          RF P   L   S 
Sbjct: 284 AHGDTLIEPAHWDDEPFEAIVSNPPYSIKWEGDSSQILIND-----SRFSPAGVLAPKSK 338

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ L
Sbjct: 339 ADLAFIMHSLSWL----ASNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCIIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K    + +     I+
Sbjct: 392 PDNLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNK----MTEKHIDDIV 444

Query: 454 DIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           + +  RE+ ++ S +++Y         +     +        +  +E +   +++    +
Sbjct: 445 EKFTKREDIEYISNLVEYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIQRIVTREE 504

Query: 513 SFWLDILKPMMQ 524
               +I K + +
Sbjct: 505 ELRKEIDKIIAE 516


>gi|253732462|ref|ZP_04866627.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253723852|gb|EES92581.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 579

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMIHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|327460986|gb|EGF07319.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1057]
          Length = 512

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/527 (19%), Positives = 209/527 (39%), Gaps = 60/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
              G   + +         F+         + S           +     I   + + + 
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSKIGTVLDKAMREIEEDNPSLEN 126

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L ++   F+ I+++       ++   YE+ I +F +   + 
Sbjct: 127 VLPQIYASPDLDK----RVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKR 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L                 +YDP CG+GG    +   + +   H
Sbjct: 183 GGEFYTPTSIVKTIVEILKPYRG-----------RVYDPACGSGGMFVQSAKFIKN---H 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L   GQE   +T  +    M+IR +++D          Q ++   DL    + +
Sbjct: 229 SGNINNLSVFGQESNADTWKMAKMNMVIRGIDAD------FGEHQANSFFNDLHPTLKAN 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF           +         R+  G P  S+ +  ++ H+ + ++      
Sbjct: 283 YIMANPPFNISNWGADKLQDD-------IRWKYGTPPNSNANYAWIQHMIHHMD---PSN 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  
Sbjct: 333 GKVGLVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKN 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM------ 467
           K  +++GK   I+A ++   I    +K R  +++  +++ D + + +NG F  +      
Sbjct: 391 K--KQKGKTLFIDARNMGEMI---DRKHRDFSNEDIKKLADTFEAFQNGNFEDVKGFCAS 445

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           ++      +   +L P R   I DK        +   R  + L + F
Sbjct: 446 VETAEIAKQDF-ILTPGRYVGIEDKEDDGEPFEEKMDRLTTELSELF 491


>gi|331087343|ref|ZP_08336411.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408369|gb|EGG87844.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 520

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/554 (22%), Positives = 208/554 (37%), Gaps = 71/554 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59
           T+       L   IW  A++L G     DF   +L     R +   L    ++       
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYINSGEADAGN 63

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
                  +A   +    E  V+  G+    +  +      + N  N  E+    F     
Sbjct: 64  AGFDFAKIADEDAEEAREGLVEEKGFFILPSELFCNVRADAANDENLNETLERVFRHIEE 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VMS 156
                    +   +F+D+D +S       A    K+ K  +G+ E++   V D       
Sbjct: 124 SAQGSESESDFAGLFDDYDVNSNKLGATVAKRNEKLVKLLNGVGEMNLGDVKDHSIDAFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG+
Sbjct: 184 DAYEYLMTMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A   +      +        +GQE+   T+ +C   M +  +  D       NI
Sbjct: 236 GSLLLKAEKILGKDAIRNG------FYGQEINITTYNLCRINMFLHDVGFDK-----FNI 284

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
               TL        + F   +SNPP+  KW    + +          RF P   L   S 
Sbjct: 285 ACEDTLLAPQHWDDEPFELIVSNPPYSIKWAGTDNPLLIND-----PRFSPAGVLAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             M F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ L
Sbjct: 340 ADMAFIMHSLSWL----APNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCIIQL 392

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+IAT + ++   K +    K   I+AT     + N       +  +   +I+
Sbjct: 393 PSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATSECVKVTN----NNKLTPENIDRIV 445

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           D +  RE    F+ +  Y           V   +      +K  + +L A+I  +++   
Sbjct: 446 DGFAKREEVEHFAHLASYEEVSGNDYNLSVSTYVEAEDTREKIDIVKLNAEI--KEIVAR 503

Query: 511 HQSFWLDILKPMMQ 524
            Q    +I K + +
Sbjct: 504 EQVLRDEIDKIIAE 517


>gi|283469726|emb|CAQ48937.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 518

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|258513150|ref|YP_003189406.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635053|dbj|BAI01027.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638108|dbj|BAI04075.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641162|dbj|BAI07122.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644217|dbj|BAI10170.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647272|dbj|BAI13218.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650325|dbj|BAI16264.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653316|dbj|BAI19248.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656369|dbj|BAI22294.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 508

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/542 (20%), Positives = 213/542 (39%), Gaps = 61/542 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S  ++   +W   +   G      +   +L    L+ +    +      +++Y 
Sbjct: 1   MTEQ-ISQDTINKALWNACDTFRGTVSPDTYRDYVLTMLFLKYISDVWQDHYDTYKKEYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKA 113
                  + +  E FV   G  FY   +   +          L +   +      D  K+
Sbjct: 60  DNPELIEAMMAQERFVLPKGADFYTLYKERNTPGNGERIDKALHAIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFSSTIARLEK--AGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F+S     EK    +L  + ++F+  +L+  P  V +  V+ N YE LI+ F +
Sbjct: 120 VFQDISFNSDRLGDEKQKNTVLRHLLEDFAKPDLNLRPSRVGNLDVIGNGYEFLIKNFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   +L          SP    ++ DP CG+   L      V 
Sbjct: 180 SGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACGSASLLMKCGKQVT 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +H        +GQE    T +     M +   +       +  I+ G T+      
Sbjct: 230 Q---NHNGSKDYALYGQEAIGSTWSFAKMNMFLHGED-------NHRIEWGDTIRSPKLL 279

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +     F    +NPPF       +DA E  H      RF  G+P  + G   F++H+ 
Sbjct: 280 DDKNHLMRFDVVTANPPFSLDKWGHEDAAEDVH-----HRFARGVPPKTKGDYAFILHMI 334

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+   +  GR  +V+    LF G +   E  IR+ L+E +L++A++ LP  LFF T I
Sbjct: 335 STLK---DRTGRMGVVVPHGVLFRGSS---EGRIRQKLIEENLLDAVIGLPEKLFFGTGI 388

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + I    +   +   V  I+A+  + + +N    + ++ ++   +I++ Y +R++  
Sbjct: 389 PAAILIFRKDR---KTKDVLFIDASREFKAGKN----QNVLTEENITKIVNTYRTRKDVD 441

Query: 463 KFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK--LSPLHQSFWLDI 518
           K++ +   D        + + R +      ++  L  +  +    K  L+ L       +
Sbjct: 442 KYAHLATPDEIRENDYNLNIPRYVDTFEEEEEIDLNAVRKERAEIKAELAKLEAQMDAYL 501

Query: 519 LK 520
            +
Sbjct: 502 KE 503


>gi|325578338|ref|ZP_08148473.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160074|gb|EGC72203.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 514

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 118/532 (22%), Positives = 204/532 (38%), Gaps = 69/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60

Query: 59  YLAFGGSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y  F   +  + +     +K  GY  Y  S+   + + + NT  NL + + +        
Sbjct: 61  YSTFNDDDPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKNIFTAIENS 119

Query: 108 ------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                   + K +F DFD +S+       +K   L  + K  + ++    +     +  +
Sbjct: 120 ATGYPSEQDIKGLFADFDTTSSRLGNTVADKNSRLADVLKGVAELDFGDFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIA 280

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   K F   +SNPP+  KW    D      +     RF P   L   S  
Sbjct: 281 LGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-----RFAPAGVLAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IA  + +LS  K      + Q I+A+ L+    N       +  +   QIL 
Sbjct: 389 PNLFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKPDTN-----NSLEPEHIEQILK 440

Query: 455 IYVSREN-GKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++  +E+    ++ + +         + V   +      +   + +L A+I 
Sbjct: 441 LFADKEDVPHLAKSVSFEEIVNNEYNLAVSSYVEQKDTREVIDIDKLNAEIK 492


>gi|73661362|ref|YP_300143.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72493877|dbj|BAE17198.1| putative type I restriction-modification system methyltransferase
           subunit [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 518

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/539 (22%), Positives = 215/539 (39%), Gaps = 70/539 (12%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAETEVAEALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
            L +  +  D E         ++  GY       +S       N R ++E  + +     
Sbjct: 63  DLTYEEAWEDEEYREDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAIRKVE 122

Query: 108 --------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    ++   +F D D SST       E+  L+ K+  N   +      +   ++ 
Sbjct: 123 TSTLGQNSEEDFIGLFSDMDLSSTRLGNTVKERTALISKVMVNLGDLPFVHSDMEIDMLG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI RF +   + A +F TP+ V  +   ++    D L        R +YDPTCG+
Sbjct: 183 DAYEFLIGRFAANAGKKAGEFYTPQQVSKILAQIVTLGKDKL--------RNVYDPTCGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L              K   +   +GQE    T+ +    ML+  +  +     + +I
Sbjct: 235 GSLLLRVG----------KETTVYRYNGQERNNTTYNLARMNMLLHDVRFE-----NFDI 279

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           Q   TL    F G++F   ++NPP+  KW  D    + E        +G  L   S    
Sbjct: 280 QNDDTLENPAFEGEKFDAVVANPPYSAKWSADSKFNDDE----RFSNYGK-LAPKSKADF 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP 
Sbjct: 335 AFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPA 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T+I T + +   +K  E    V  I+A++ +   +N    +  + D+Q  +I+  
Sbjct: 388 NIFYGTSIPTCVLVF--KKCREADQDVLFIDASNEFEKGKN----QNHLTDEQVEKIIAT 441

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           Y +RE   K+S   + +        +  P    ++        ++ D   + L+ +   
Sbjct: 442 YKNREAVDKYSYAANLKEIDENDYNLNIP---RYVDTFEEEEPVDLDKVQQDLNQIDDE 497


>gi|57650597|ref|YP_186690.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|148266892|ref|YP_001245835.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392937|ref|YP_001315612.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|161510023|ref|YP_001575682.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|258413472|ref|ZP_05681747.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|258421404|ref|ZP_05684331.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|258436896|ref|ZP_05689236.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|258444386|ref|ZP_05692720.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|258445598|ref|ZP_05693778.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|258448130|ref|ZP_05696259.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|258455962|ref|ZP_05703917.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282893571|ref|ZP_06301804.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|282927465|ref|ZP_06335083.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|295405681|ref|ZP_06815491.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297245589|ref|ZP_06929457.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|304378946|ref|ZP_07361711.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284783|gb|AAW36877.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|147739961|gb|ABQ48259.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945389|gb|ABR51325.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|160368832|gb|ABX29803.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257839719|gb|EEV64188.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|257842828|gb|EEV67250.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|257848687|gb|EEV72674.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|257850645|gb|EEV74593.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|257855548|gb|EEV78483.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|257858645|gb|EEV81519.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|257862174|gb|EEV84947.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|269941283|emb|CBI49678.1| type I restriction-modification system modification protein
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282590789|gb|EFB95865.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|282764257|gb|EFC04384.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|285816131|gb|ADC36618.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus 04-02981]
 gi|294969756|gb|EFG45775.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297177575|gb|EFH36826.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|304342474|gb|EFM08348.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828927|emb|CBX33769.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130059|gb|EFT86048.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329314488|gb|AEB88901.1| Type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329725916|gb|EGG62395.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 518

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|253681576|ref|ZP_04862373.1| type I restriction-modification system, M subunit [Clostridium
           botulinum D str. 1873]
 gi|253561288|gb|EES90740.1| type I restriction-modification system, M subunit [Clostridium
           botulinum D str. 1873]
          Length = 538

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 214/558 (38%), Gaps = 51/558 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +A  + + +W+ A  L G    +++   ILPF   R L    +     + + E Y     
Sbjct: 3   NAKDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNGLEEFYEVTDE 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAI----- 114
              +        G  +     Y+ + +           ++ +    SF+ NAK       
Sbjct: 63  DEKEEYLEEISKGIGYAIDPAYTWNKIVSKIEDHKIKASDFQDMFDSFNTNAKRNAVAEA 122

Query: 115 -----FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                F D +   T    +  E+A  L  I    +      D+  D ++ ++YE+LI +F
Sbjct: 123 DFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFNFKDDSGRD-ILGDVYEYLIGQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP +V  +   ++         +       +YDPT G+G  L      
Sbjct: 182 AANAGKKGGEFYTPHEVSQILAKIVTVDAHRTGNQ-----FRVYDPTMGSGSLLLTVQKE 236

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +     +      +   GQEL   T+ +    +++  +          +         + 
Sbjct: 237 L----PYGDEEGSVEFFGQELNTTTYNLARMNLMMHGVNYRNMELKRADTLDADWPFAEK 292

Query: 287 FTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +   +F   ++NPP+ +KW       EK+ +       G G+   S     F++H  
Sbjct: 293 DGTQIPLKFDAVVANPPYSQKWNTKDVDREKDIRFK-----GYGVAPASKADYAFVLHGL 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L    +  G  AIVL    LF   +   E +IR+ +++N+L++ ++ LP++LF+ T+I
Sbjct: 348 YHL----DKAGTMAIVLPHGVLFRSAS---EGKIRKNIIDNNLLDTVIGLPSNLFYGTSI 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   R+  + +  V  I+A++ +   +N    +  +  D   +I+D Y +R++  
Sbjct: 401 PTCVLVFKGREARKNKD-VLFIDASNEFEKGKN----QNKLTPDNINKIIDTYHNRQDVE 455

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+S +            +  P  +    ++  +   E      ++    ++ +  + + +
Sbjct: 456 KYSHVASLDEIKENDYNLNIPRYVDTFEEEEVIPLSEVAKELTEVKAEIENSYESLFRLL 515

Query: 523 MQQIYPYGWAESFVKESI 540
            +       A+  + + I
Sbjct: 516 NELNGTTDEAKDELSKFI 533


>gi|281420896|ref|ZP_06251895.1| ribosomal protein L11 [Prevotella copri DSM 18205]
 gi|281405188|gb|EFB35868.1| ribosomal protein L11 [Prevotella copri DSM 18205]
          Length = 502

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 106/538 (19%), Positives = 202/538 (37%), Gaps = 62/538 (11%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +      IWK A+ L G+   + +  V+L    L+ +    E          
Sbjct: 1   MAKKQDTISIGFEEKIWKAADILRGNLSASQYEGVVLGLIFLKYISDRFEQKFQE----- 55

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
           L         +     A   F+  +E   S + +           +   + I   ++  K
Sbjct: 56  LQGDEYADPEDKDEYTAENIFFVPAEARWSKISAAAHTPEIGVVIDEALTAIERENERLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I         + +      L  +   F+ IE+H       ++   YE+ +++F S   +
Sbjct: 116 GILPKNFARPELDK----RRLGDVVDLFTNIEMHDAGEEKDLLGRTYEYCLQQFASLEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V     +L   +             +YDP CG+GG    +   +     
Sbjct: 172 NGGEFYTPSCIVRTLVEILEPYEG-----------RVYDPCCGSGGMFVQSAKFIER--- 217

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE  P+T  +    + IR L++      +       T   D     + 
Sbjct: 218 HKGNLRKISIYGQEANPDTWKMAHMNLAIRGLDA------NLGNVFADTFYDDQHPTLKA 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF           E         R+  GLP   + +  ++ H+ + L      
Sbjct: 272 DFILANPPFNLSDWGQSALQEDV-------RWQYGLPPAGNANFAWMQHMIHHL----AP 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE +IR+ ++E DL+E IVALP+ LF+ T I   LW +S 
Sbjct: 321 NGKIGLVLANGALSSQS--GGEGQIRQAIIEADLVEGIVALPSQLFYSTGIPVSLWFISR 378

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K   ++GK   I+A +L T +  + ++  ++ D   ++I D + + + G       F  
Sbjct: 379 NKA--QKGKTVFIDARNLGTMVTRKLRE--LMPDTDIKKISDTFHAFQQGTLEDEKGFCA 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +        +   +L P R   I +  G   +  +     L+   +  + +  K   +
Sbjct: 435 VCTTEQIAAQDF-ILTPGRYVGIAEDEGDG-VPFEEKMTNLTGELKQLFEESKKQEEE 490


>gi|71065437|ref|YP_264164.1| putative type I restriction-modification system, M subunit
           [Psychrobacter arcticus 273-4]
 gi|71038422|gb|AAZ18730.1| putative type I restriction-modification system, M subunit
           [Psychrobacter arcticus 273-4]
          Length = 529

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/508 (19%), Positives = 184/508 (36%), Gaps = 67/508 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                       +W  A  L G  + +++  ++L    L+ +    E  R  + +     
Sbjct: 9   NDQTKDGRFEEALWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEK 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIF 115
               +            FY  +E   S +     + ++        S I   + + K   
Sbjct: 69  HIDMVQ----AYTKDNVFYLPAESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGAL 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            D  FS       K   L  +  N   I        +  +  +YE+ + +F +   +G  
Sbjct: 125 PDNYFSRLGLTASKLAALIDVVNNIDTI----GNPEEDTVGRVYEYFLGKFAATEGKGGG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ VV+L   ++                 +YDP CG+GG    ++  +    SHH 
Sbjct: 181 EFYTPKSVVNLIAEMVEPYQG-----------KIYDPCCGSGGMFVQSIKFIE---SHHG 226

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T+ +    + IR + S      +       T  KD     +  + 
Sbjct: 227 NTKDVSIYGQEYTSTTYKLAKMNLAIRGISS------NLGDVAADTFFKDQHEDLKADFI 280

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF +K  +  D +  + +       G   P   + +  +++H+ +KL    +  G 
Sbjct: 281 MANPPFNQKDWRASDELVDDPRWA-----GYPTPPTGNANYAWILHMISKL----SEHGT 331

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  VL++  +      SGE EIR+ ++ENDL++ ++ALP  LF+ T I   LW ++  K 
Sbjct: 332 AGFVLANGSMST--TTSGEGEIRQQIIENDLVDCMIALPGQLFYTTQIPVCLWFINKDKQ 389

Query: 416 -----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                        R G+   I+A  + + I    +  + +  D    I   Y +    K 
Sbjct: 390 AKSADSKARGLRNRSGETLFIDARAIGSMI---SRTNKELTKDDIEAIAKTYHAWRGEK- 445

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                    GY           S  LD 
Sbjct: 446 ------EAGGYEAYTDEAGYCKSATLDD 467


>gi|260768976|ref|ZP_05877910.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio furnissii CIP 102972]
 gi|260617006|gb|EEX42191.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio furnissii CIP 102972]
          Length = 514

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 207/519 (39%), Gaps = 67/519 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGSNIDLESF- 72
           +W  A  L G+    DF   IL     + L   L      +  E  + F G+  D E   
Sbjct: 13  LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGVTFVGAADDQELIH 72

Query: 73  ------VKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFS---------DNAKAI 114
                 V+  GY       +S             + L+  +A            D+   +
Sbjct: 73  ELREECVENLGYFIAPKQLFSSLAARGQKQEFIIDELDRVLADIEQSTTTADSADDFNGL 132

Query: 115 FEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FE+ D +S+        +  L+ ++  +   I+ H +     ++ + YE+LI +F S   
Sbjct: 133 FEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASGAG 192

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   L+            G ++++YDPTCG+G  L      V    
Sbjct: 193 KKAGEFYTPQQVSKILAKLV---------SLDGNVKSVYDPTCGSGSLLLRVAREVGSHN 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L   GQE  P T+ +    ML+  +  D       +I+   TL   +   KR
Sbjct: 244 --------LEFCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLEKR 290

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF   W  ++  +  E +  + G+  P     +     F++H+ ++L    N
Sbjct: 291 FDAVVANPPFSANWSANELHLNSE-RFADYGKLAP----KTKADFAFVLHMIHQL----N 341

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF T I T + + 
Sbjct: 342 ETGTLAVVVPHGILFRGAA---EGHIRQHLIEKKNYLDAVIGLPAGIFFGTGIPTCILVF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
             +K  +    V  I+A++ +      GK +  + D    +I++ Y  RE+  KF+ +  
Sbjct: 399 --KKNRKHADNVLFIDASNHFEK----GKAQNFMRDADVERIVEAYSKRESVEKFAHVAK 452

Query: 470 YRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK 506
                     + + R +      +   L  + +D+   +
Sbjct: 453 LYEIAENDYNLNIPRYVDTFEEEEPVDLDAVASDLALLE 491


>gi|168207083|ref|ZP_02633088.1| type I restriction-modification system, M subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661530|gb|EDT14213.1| type I restriction-modification system, M subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 514

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 212/544 (38%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++L + +W  A DL G+    +F   IL     R L   +E   + + E+       
Sbjct: 9   EQQSNLQSNLWNIANDLRGNMDANEFKNYILGLIFYRYLSENVESRANRLLEEDNMTYAE 68

Query: 66  NIDLESFVKVA--------GYSF------------YNTSEYSLSTLGSTNTRNNLESYIA 105
             + E   +          GY                T ++ +  L          +   
Sbjct: 69  AWEDEELREALQEELVNDIGYYIEPKFLYHNLLSKIETGDFDIEMLEEAINNITESTLGE 128

Query: 106 SFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              +    +F+D D  ST    +   ++ L+ K+    + I+         ++ + YE+L
Sbjct: 129 DSEEEFDHLFDDMDLKSTKLGKDVKSRSDLIAKVMGKIAQIDFSFSNSEIDILGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQEL   T+ +    ML+  +          +I+   TL
Sbjct: 241 VSREA----------NVRTFYGQELTSTTYNLARMNMLLHGVRYS-----DFDIKNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   RF   ++NPP+  KW  D+  ++ E +    G+  P     S     F+ H+
Sbjct: 286 ENPQHIDLRFEAVVANPPYSAKWSGDEKFLDDE-RFSAYGKLAP----KSKADFAFVQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            ++L    +  G  A+VL    LF G A   E  IR++L+E  ++++A++ LP ++FF T
Sbjct: 341 IHQL----DNNGTMAVVLPHGVLFRGAA---EGVIRKYLIEKRNVLDAVIGLPANIFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  +    +  I+A++ +   +N    + ++ D    +I++ Y +REN
Sbjct: 394 SIPTVILVF--KKNRKNTDNIMFIDASNEFEKGKN----QNLLRDSDVDKIIETYKNREN 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +            +  P  +    ++  +   E     +       + + ++ K
Sbjct: 448 VDKYAYVSSMEEIKENDYNLNIPRYVDTFEEEEPVDIKEVQGRLKAREEKINNLYEELNK 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 QLKE 511


>gi|325107544|ref|YP_004268612.1| type I restriction-modification system, M subunit [Planctomyces
           brasiliensis DSM 5305]
 gi|324967812|gb|ADY58590.1| type I restriction-modification system, M subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 510

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 203/545 (37%), Gaps = 60/545 (11%)

Query: 1   MTE------FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           MT        T S A +   +WK  +   G    +++   IL    ++ +    +    A
Sbjct: 1   MTNGNGKQSETVSQAEINGILWKACDTFRGAVDPSEYKNYILVMLFVKYISDVWQDHYDA 60

Query: 55  VREKY--------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
           +  +Y               +  E FV     +F +  +   +          L++   +
Sbjct: 61  LVAEYGDPKSKTARERIERRLKRERFVLPVQCTFQSLYDQRNAANIGEVINEALDAIEDA 120

Query: 107 FSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYE 160
             +  + +F + DF+S        E+   L  + ++FS   ++L P  V +  V+ + YE
Sbjct: 121 NKEKLEGVFRNIDFNSESTLGQTRERNVRLKSLLEDFSDPKLDLRPSRVGNLDVIGDAYE 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI RF S   + A +F TP +V  L   L+           P     + DP CG+G  L
Sbjct: 181 YLIGRFASNAGKKAGEFYTPPEVSELIARLV----------DPQPGERICDPACGSGSLL 230

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V               +GQE    T A+    M +  ++ + R +    I+   
Sbjct: 231 IKCGQKVG--------TNDFSLYGQENNGSTWALAKMNMFLHAMD-NARIEWGDTIRNPR 281

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            LS D     RF   ++NPPF       +DA     ++    RF  G+P  + G + F+ 
Sbjct: 282 LLSDDRL--MRFEVVVANPPFSLDKWGQEDA-----RSDHYNRFHRGVPPKNKGDLAFIS 334

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+    E      GR A+V     LF GRA   E  IR+  ++ DL++AI+ LP DLF+ 
Sbjct: 335 HMV---ETITVESGRIAVVAPHGVLFRGRA---EGSIRKQFVDEDLLDAIIGLPPDLFYG 388

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T +A  + +        R GKV  I+A+  +   +        +      +I+  Y  RE
Sbjct: 389 TELAAAILVFRRS---NRDGKVLFIDASQEYADCKG----HNRLRKQDIERIVAAYSERE 441

Query: 461 -NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K++ +            +  P  +   ++   +          ++          + 
Sbjct: 442 FIDKYAYLASKEDIQRNGYNLNIPRYVDTFVEPLPIDLESVGTRLAEVDQALAEAEAHVQ 501

Query: 520 KPMMQ 524
           K +  
Sbjct: 502 KCLEG 506


>gi|218281999|ref|ZP_03488311.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989]
 gi|218216986|gb|EEC90524.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989]
          Length = 521

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 111/549 (20%), Positives = 207/549 (37%), Gaps = 68/549 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                A L   +W  A DL G    ++F   IL     R L   L        E      
Sbjct: 7   QAKQQAELHTQLWAMANDLRGSMDASEFKNYILGLIFYRYLSDKLSNFVDEELEDDDISY 66

Query: 64  GSNIDLESF--------VKVAGYSFYNTSEYSLST--LGSTNTRNNLESYIA-------- 105
                 E F        V   G   Y     +L +  +   N +    S +A        
Sbjct: 67  ADAWKDEDFKQDIIDALVDDEGGLGYVIEPANLWSTLIDKINVKQFDISMLAKAVNDLTE 126

Query: 106 -----SFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                    + + +F+D D +++       +++ L+ K+      I  H +     V+ +
Sbjct: 127 STIGLGSQRDFENLFDDMDLNASKLGKSEADRSALIAKVMLKIDDINFHYEDAEIDVLGD 186

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  L   L+      L        + +YDPTCG+G
Sbjct: 187 AYEYLIGQFAASAGKKAGEFYTPQQVSKLLAKLVTVGKSKL--------KNVYDPTCGSG 238

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L              K   ++  +GQE    T+ +    ML+  +  +     + +  
Sbjct: 239 SLLLRVA----------KETDVVSFYGQEKVSTTYNLARMNMLLHGVPFNHFDIENNDTL 288

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +      +     RF   ++NPP+  KW  D   ++ E +    G+  P     S     
Sbjct: 289 EHP---NEEHMKMRFDAVVANPPYSAKWSADPKFLDDE-RFSAYGKLAP----KSKADYA 340

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396
           F+ H+   L    +  G  A+VL    LF G A   E  IR++L+ E + ++A++ LP +
Sbjct: 341 FVQHMLYLL----DDAGTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGLPAN 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + +    KT +    +  I+A+  + S +N+ +    + D   ++I+D Y
Sbjct: 394 LFFGTSIPTCVLVFKKCKTHD---DIFFIDASKEFESGKNQNR----LTDANIQKIMDTY 446

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           ++R++  K++              +  P  +    ++  +         ++L        
Sbjct: 447 LARKDVEKYAHCASLEEIAENDYNLNIPRYVDTFEEEEEIDIHAVMKEIKELEAKRDELD 506

Query: 516 LDILKPMMQ 524
            +I   + +
Sbjct: 507 KEIDVYLKE 515


>gi|298695076|gb|ADI98298.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus subsp. aureus ED133]
          Length = 518

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 127/551 (23%), Positives = 221/551 (40%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL GD   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGDMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFYIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y S+E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKSKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|258424533|ref|ZP_05687410.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9635]
 gi|257845128|gb|EEV69165.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9635]
          Length = 569

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 54  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 113

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 114 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 172

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 173 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 232

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 233 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 284

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 285 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 329

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 330 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 384

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 385 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 437

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  + D Q  +I++
Sbjct: 438 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLTDAQVERIIN 491

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +      +   L +++ D+    ++++ 
Sbjct: 492 TYKCKETIDKYSYSATLQEIAENDYNLNIPRYVDTFEEEEPIDLEQVQQDLKNIDKEIAQ 551

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 552 VEQEINAYLKE 562


>gi|229512706|ref|ZP_04402174.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TMA 21]
 gi|229350216|gb|EEO15168.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TMA 21]
          Length = 523

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 108/521 (20%), Positives = 193/521 (37%), Gaps = 68/521 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGSN 66
              L   +W  A  L G+    DF   IL     + L   L      +  E  L F   +
Sbjct: 6   QQELKKQLWNIANTLRGNMDADDFRDYILGLIFYKYLSDKLNQYADDLLSEDGLTFSEID 65

Query: 67  ID-----------LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFS---- 108
                         E  +   GY F  +  + +      N     +++   +        
Sbjct: 66  EKSEQGKAMLAAIREEALDTLGYFFAPSELFHVIAQAGANGEFILDDVRDVLNDIEQSTL 125

Query: 109 -----DNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                D+   +F++ D  S         +  L+ ++  +   I+ H       ++ + YE
Sbjct: 126 GAESADDFNGLFDELDLQSNKLGKTPEARNKLIAQVLVHLDNIDFHLQESEIDILGDAYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F S   + A +F TP+ V  L   L+              I+++YDPTCG+G  L
Sbjct: 186 YLIGMFASGAGKKAGEFYTPQMVSKLLAKLV--------TLDNPNIKSVYDPTCGSGSLL 237

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                            P +  +GQE  P T+ +    M++  +          +I+   
Sbjct: 238 LRVAKEA--------NNPDIKYYGQERNPSTYNLARMNMIMHDVHY-----KRFDIENDD 284

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL        RF   ++NPPF   W      +  + +  + G+  P     S     F++
Sbjct: 285 TLEAPQHLDLRFDAVVANPPFSANWSASPLHLSSD-RFADYGKLAP----QSKADFAFVL 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFF 399
           H+ ++L    N  G  A+VL    LF G A   E  IR+ LL E + ++ ++ LP ++FF
Sbjct: 340 HMLHQL----NDTGTMAVVLPHGVLFRGAA---EGHIRQHLLKEKNYLDMVIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +    +  +   KV  I+A+  +    N       + ++  ++ILD    R
Sbjct: 393 GTSIPTCVLVFKKNRQAD--DKVLFIDASQYYEKGTN----NNQMREEDLQRILDAVTKR 446

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           EN  KF+ +            +  P  +    ++  +   E
Sbjct: 447 ENIDKFAYLASQAELKENDYNLNIPRYVDTFEEEAAVDLAE 487


>gi|148266054|ref|YP_001232760.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146399554|gb|ABQ28187.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 824

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 110/517 (21%), Positives = 204/517 (39%), Gaps = 53/517 (10%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-SFVK 74
           ++  +DL G+   +++ + I     L+RL    +  R  + +     G +   +      
Sbjct: 14  FRACDDLRGNMDASEYKEYIFGMLFLKRLSDLFDQEREQLAKDLKEKGMAEAVIAGQLNN 73

Query: 75  VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFED----FDFSSTIA-RL 127
              Y+F+   E   S +    TN   NL   + +  D      +D     +F+  I  R 
Sbjct: 74  PDKYTFFVPEEAHWSNIRHLKTNVGTNLNKALEALEDANVDALQDVLKGINFNKKIGQRS 133

Query: 128 EKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                L    +NF  I L  +      ++   YE+LI+ F     + A +F +P DVV  
Sbjct: 134 LDDDTLANFIQNFEKIPLRDENFEFPDLLGAAYEYLIKYFADSAGKKAGEFYSPADVVRT 193

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P    ++YDPTCG+GG L    ++V +CG     P  L   GQE
Sbjct: 194 LVEIV----------DPQPGMSVYDPTCGSGGMLIQTRDYVRECGGD---PRDLALAGQE 240

Query: 247 LEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
               T ++C   ML+  +  +D R++ +    Q    + +L   +R    L+NPPF + +
Sbjct: 241 SIGTTWSICKMNMLLHGIEHADIRQEDTLRHPQHKAENNEL---QRHDRVLANPPFSQNY 297

Query: 306 EKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            K              GRF      K     ++F+ H+   L+      G+ A V+    
Sbjct: 298 IK--------KDIDYPGRFAVWLPEKGKKADLMFVQHMLAVLKA----DGKMATVMPHGV 345

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---EERRGK 421
           LF    G  E   RR  +E+  +EA++ LP  LF+ T I   + +++ +     +  R  
Sbjct: 346 LFR---GGEEKAARRHFIEHGWLEAVIGLPAGLFYGTGIPACVLVMNKKDAGSGDNVRDH 402

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY--RRI 478
           V  INA   +     EGK +  +  +   +I+  Y +  +   ++R +            
Sbjct: 403 VFFINADREY----REGKAQNFLRPEDISKIVHAYRTMADVPGYARRVPVSEIKVEDYNC 458

Query: 479 KVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
            + R +  +   +   + A L   +   ++  + + +
Sbjct: 459 NIRRYVDNAPPPEPHDVRAHLHGGVPTVEIEAMARYW 495


>gi|325690777|gb|EGD32778.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK115]
          Length = 513

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 103/528 (19%), Positives = 208/528 (39%), Gaps = 60/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
              G   + +         F+         + S           +     I   + + + 
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEEDNPSLEN 126

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L ++   F+ I+++       ++   YE+ I +F +   + 
Sbjct: 127 VLPQIYASPDLDK----RVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKR 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L                 +YDP CG+GG    +   + +   H
Sbjct: 183 GGEFYTPTSIVKTIVEILKPYRG-----------RVYDPACGSGGMFVQSAKFIKN---H 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L   GQE   +T  +    M+IR +++D          Q ++   DL    + +
Sbjct: 229 SGNINNLSVFGQESNADTWKMAKMNMVIRGIDAD------FGEHQANSFFNDLHPTLKAN 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF           +         R+  G P  S+ +  ++ H+ + ++      
Sbjct: 283 YIMANPPFNISNWGADKLQDD-------IRWKYGTPPNSNANYAWIQHMIHHMD---PSN 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  
Sbjct: 333 GKVGLVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKN 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRM 467
           K  +++GK   I+A ++   I    +K R  +D+  +++ D + + +NG       F   
Sbjct: 391 K--KQKGKTLFIDARNMGEMI---DRKHRDFSDEDIKKLADTFEAFQNGNLEDVKGFCAS 445

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           ++      +   +L P R   I +K        +   R  + L + F 
Sbjct: 446 VETAEIAKQDF-ILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELFI 492


>gi|257424551|ref|ZP_05600980.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427217|ref|ZP_05603619.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257429853|ref|ZP_05606240.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432557|ref|ZP_05608920.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435461|ref|ZP_05611512.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903019|ref|ZP_06310912.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282907408|ref|ZP_06315256.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282912639|ref|ZP_06320435.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913267|ref|ZP_06321059.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282922895|ref|ZP_06330585.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283959867|ref|ZP_06377308.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293498314|ref|ZP_06666168.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509255|ref|ZP_06667972.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293550522|ref|ZP_06673194.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295426965|ref|ZP_06819604.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|257273569|gb|EEV05671.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257276848|gb|EEV08299.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257280334|gb|EEV10921.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257283436|gb|EEV13568.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257286057|gb|EEV16173.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282315116|gb|EFB45502.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282323367|gb|EFB53686.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324335|gb|EFB54651.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282330307|gb|EFB59828.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282597478|gb|EFC02437.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789459|gb|EFC28286.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290919569|gb|EFD96645.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291097245|gb|EFE27503.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467894|gb|EFF10403.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|295129417|gb|EFG59044.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 525

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 122/551 (22%), Positives = 217/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 10  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 69

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 70  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 128

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 129 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 188

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 189 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 240

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L                  +    GQE    T+ +    ML+  +  +     + +
Sbjct: 241 SGSLLLRVGKEAK----------VYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 285

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 286 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 340

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 341 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 393

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 394 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 447

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSP 509
            Y  +E   K+S     +        +  P  +    ++  +     + +     ++++ 
Sbjct: 448 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 507

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 508 IEQEINAYLKE 518


>gi|89075002|ref|ZP_01161447.1| type I restriction-modification system, M subunit [Photobacterium
           sp. SKA34]
 gi|89049241|gb|EAR54805.1| type I restriction-modification system, M subunit [Photobacterium
           sp. SKA34]
          Length = 521

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/504 (19%), Positives = 191/504 (37%), Gaps = 52/504 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   +   G    + +   +L    L+ +    +     +  ++       
Sbjct: 23  NQDEINKTVWSACDTFRGTVDPSIYKDFVLTMLFLKYISDVRQDKVEELTAQFGDNQAMI 82

Query: 67  IDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             +   +SF    G +F++  E+       +     L +         K +F+D  F++ 
Sbjct: 83  EAMLASQSFKIPTGSTFWDLYEHRFEAGNGSRIDQALHAIEEENGTKLKGVFQDISFNTD 142

Query: 124 IARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               EK    +L  + ++F    + L P  V    V+ N YE LI+ F +   + A +F 
Sbjct: 143 KLGDEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEFLIKHFAASSGKSAGEFY 202

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L + +L           P     + DP CG+G  L      +       K   
Sbjct: 203 TPPEVSDLLSIIL----------EPQQGDEICDPACGSGSLLMKCGKQIQKNFGGSK--- 249

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFH 293
                GQE    T ++    M +   +       +  I+ G T+              F 
Sbjct: 250 QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDANGGLLHFD 302

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPF       +DA     ++   GRF  G+P  + G   F+ H+   L+      
Sbjct: 303 VVTANPPFSLDKWGHEDA-----ESDHFGRFRRGIPPKTKGDYAFISHMIETLKPET--- 354

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +V+    LF   +   E +IR+ L++ +L++ ++ LP  LFF T I   + +    
Sbjct: 355 GRMGVVVPHGVLFRASS---EGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILLFKKH 411

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           KT+    KV  I+A+  + S +N    +  +  D  ++I+D Y +R+N  K++ +     
Sbjct: 412 KTD---NKVLFIDASREFKSGKN----QNALTSDNIQKIVDTYKARKNVDKYAYLATLEE 464

Query: 473 FGYRRIKVLRPLRMSFILDKTGLA 496
                  +  P  +    ++  + 
Sbjct: 465 IAENDYNLNIPRYVDTFEEEAEID 488


>gi|327490259|gb|EGF22047.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1058]
          Length = 512

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 103/528 (19%), Positives = 208/528 (39%), Gaps = 60/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
              G   + +         F+         + S           +     I   + + + 
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEEDNPSLEN 126

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L ++   F+ I+++       ++   YE+ I +F +   + 
Sbjct: 127 VLPQIYASPDLDK----RVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKR 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L                 +YDP CG+GG    +   + +   H
Sbjct: 183 GGEFYTPTSIVKTIVEILKPYRG-----------RVYDPACGSGGMFVQSAKFIEN---H 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L   GQE   +T  +    M+IR +++D          Q ++   DL    + +
Sbjct: 229 SGNINNLSVFGQESNADTWKMAKMNMVIRGIDAD------FGEHQANSFFNDLHPTLKAN 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF           +         R+  G P  S+ +  ++ H+ + ++      
Sbjct: 283 YIMANPPFNISNWGADKLQDD-------IRWKYGTPPNSNANYAWIQHMIHHMD---PSN 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  
Sbjct: 333 GKVGLVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKN 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRM 467
           K  +++GK   I+A ++   I    +K R  +D+  +++ D + + +NG       F   
Sbjct: 391 K--KQKGKTLFIDARNMGEMI---DRKHRDFSDEDIKKLADTFEAFQNGNLEDVKGFCAS 445

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           ++      +   +L P R   I +K        +   R  + L + F 
Sbjct: 446 VETAEIAKQDF-ILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELFI 492


>gi|227893571|ref|ZP_04011376.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
 gi|227864623|gb|EEJ72044.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
          Length = 565

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/561 (21%), Positives = 215/561 (38%), Gaps = 67/561 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M   T +   L+N ++  A+ L       ++   +L     + L   L      V E   
Sbjct: 21  MANNT-TKTELSNALFSAADALRSKMDANEYKNYLLGIVFYKYLSDKLLYHVGEVLENNP 79

Query: 58  --------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------------- 95
                   K       + DL+  +K +              L   N              
Sbjct: 80  NLSLDQAQKLYEDQYRDPDLQDELKYSLSFSLEPKHTFTYILNEINGEARDEKGIKTFQI 139

Query: 96  -TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR 153
               +  + I S S + + +F+D    S             I      I  L     P  
Sbjct: 140 SDLADAFNDIESTSSDFEGLFQDVQLYSPRLGANAQKQADTIANVIKAIGNLEIVHAPGD 199

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F SE  + A +F TP+ V  L T L L        ++     T+YDP 
Sbjct: 200 VLGDAYEYLIGQFASETGKKAGEFYTPQKVSELLTKLTL------VNKNYPNGMTVYDPA 253

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +   ++ D G        ++ +GQE+   T  +    M++  ++S      +
Sbjct: 254 MGSGSLLLNFRKYIEDVGGK---ENEVIYYGQEINMSTFNLAKMNMILHGVDSS-----N 305

Query: 274 KNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++++ G TL +D     +  F   + NPP+ + W  +K  + ++ +    G   P     
Sbjct: 306 QHLRNGDTLDEDWPPLSQTMFDSVVMNPPYSQHWSANKGFL-QDPRFSPYGVLAP----K 360

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+A++
Sbjct: 361 SKADYAFLLHGLYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRKKLLENGSIDAVI 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LF+ T+I T + +L   K       V  I+A+  +   +N    +  + ++  ++
Sbjct: 414 GLPANLFYNTSIPTVIIVLKKDKENR---SVMFIDASKGFEKKKN----QNALREEDIQK 466

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ILD Y  RE+  +++ +  Y         + + R +          L ++ +D+    + 
Sbjct: 467 ILDTYRKREDLKRYAHLAKYDEIEENDFNLNIPRYVDTFVPEPPVDLKKVASDLHETNIE 526

Query: 509 -PLHQSFWLDILKPMMQQIYP 528
               Q   + +LK +      
Sbjct: 527 IEQTQKELVGMLKELTSDDKD 547


>gi|224023386|ref|ZP_03641752.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM
           18228]
 gi|224016608|gb|EEF74620.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM
           18228]
          Length = 502

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 196/529 (37%), Gaps = 63/529 (11%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M + + +A       IWK A+ L G+   +++  V+L    L+ +    E     + E+ 
Sbjct: 1   MAKKSNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDRFEVKYHELLEE- 59

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               G   + +     +   F+   E   + +    T+      I +  DNA  + E  +
Sbjct: 60  ----GDGFEEDKDEYTSENIFFVPQEARWTVV----TKAAHTPEIGTAIDNAMRLIEKEN 111

Query: 120 ------FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                      AR E     L  +   F+ I++        ++   YE+ + +F     +
Sbjct: 112 PRLKGILPKNFARPELDKRRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  +V     +L           P     +YDP CG+GG    +   +     
Sbjct: 172 LAGEFYTPACIVRTLVEVL----------QPYSG-RVYDPCCGSGGMFVQSAKFI---NE 217

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +   GQ+  P T  +    + IR +E+D             T   D     + 
Sbjct: 218 HQGNINNISVFGQDSNPTTWKMAQMNLAIRGIEAD------LGKFAADTFFDDQHPTLKA 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y L+NPPF           +         R+  G+P   + +  ++ H+ + L    + 
Sbjct: 272 DYILANPPFNLSDWGADKLQDDV-------RWKYGIPPSGNANFAWIQHMIHHL----SP 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR  +VL++  L +     GE  IR  +++ DL+E IV +P+ LF+ T I   LW L+ 
Sbjct: 321 HGRIGMVLANGALSSQS--GGEGTIRENIIKADLVECIVTMPSQLFYTTGIPVSLWFLNR 378

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRE------NGKFS 465
            K  ++ GK+  I+A  + T +    +K R +++    ++I   Y   +         + 
Sbjct: 379 SK--KQIGKILFIDARQMGTMV---TRKLRELDEKKDIQRIAKTYNDFQAGTLENEKGYC 433

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            +        +   +L P R   I +         +   R  S L   F
Sbjct: 434 AVATLDEVAKQDY-ILTPGRYVGIAEAEDDGEPFQEKMERLTSELSDMF 481


>gi|298693765|gb|ADI96987.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus subsp. aureus ED133]
          Length = 518

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 126/551 (22%), Positives = 218/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
           +TE      A L   +W  A DL G+   ++F   IL     R L    E   +      
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 58  -----KYLAFGGSNIDL-ESFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
                +  A G    DL    +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADGEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|189423916|ref|YP_001951093.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420175|gb|ACD94573.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 492

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 115/486 (23%), Positives = 199/486 (40%), Gaps = 49/486 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +++W  A  L G     D+ + I P    +R+    +       ++    GG  
Sbjct: 6   SQQELESYLWGAATLLRGLIDAGDYKQFIFPLLFFKRVSDVYDEEYQQAMDE---SGGDF 62

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +   F   AG+ + +  +   +   +   +  + +  A+  D    IF D  +++   R
Sbjct: 63  AENHRFQIPAGFHWSDVRQTPKNVGMT--IQTAMRAIEAANPDQLTGIFGDAPWTNK-ER 119

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    L   + ++FS   L    VP+  + N YE LI++F  +    A +F T R VVHL
Sbjct: 120 LPDETLK-DLIEHFSTQTLSVANVPEDELGNAYEFLIKKFADDSGHTAAEFYTNRTVVHL 178

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T LL           P    ++YDPTCGTGG L  A+  V   G  ++    L  +GQE
Sbjct: 179 MTQLL----------DPQPGESIYDPTCGTGGMLLSALAEVKRTGGEYRT---LKLYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG 302
               T  +    + +  +E          I +G TL++         K+F   L+NPP+ 
Sbjct: 226 RNLMTSGIARMNLFLHGIED-------FQIARGDTLAEPKLIEGDRLKQFDVILANPPYS 278

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K            ++ + GR   G P        F  H+   L       GR AI+   
Sbjct: 279 IKQWD-----RPAFESDKWGRNFLGTPPQGRADYAFFQHILKSL----TKKGRCAILWPH 329

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E E+R  ++  DL+EA++ L  +LF+ + + + + +    KT ER+GKV
Sbjct: 330 GVLFRNE----EQEMRAKMIAQDLVEAVIGLGPNLFYNSPMESCVVVCRRNKTGERKGKV 385

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYRRIKVL 481
             I+A +  T  R +      +  + + +IL  + + ++   F+++            + 
Sbjct: 386 LFIDALNEVTRERAQS----FLKPEHQDRILAAFRNFQDDAGFAKVATLEEIAANGSNLS 441

Query: 482 RPLRMS 487
            PL + 
Sbjct: 442 IPLYVK 447


>gi|294619473|ref|ZP_06698917.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
 gi|291594300|gb|EFF25730.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
          Length = 515

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 116/529 (21%), Positives = 204/529 (38%), Gaps = 62/529 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M+  T   A L + IWK A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MSSAT-QRAKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------- 109
              L+      +++         F   S+       + NT  +L + +A+          
Sbjct: 60  YAELSDDVITNEIKEDAIKTKGYFIYPSQMFSRIAKTANTNESLNTDLAAIFSAIESSAN 119

Query: 110 ------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++    +     +  + Y
Sbjct: 120 GYPSELDIKGLFADFDTTSNRLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQSVSSLIAQLAIHKQTTINK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A                   +GQE+ P T+ +    M +  +  D       N    
Sbjct: 232 LLQAKKQFDAHIIEDG------FYGQEINPTTYNLARMNMFLHNINYDKFHIALGNTLLD 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
               +D    K F   +SNPP+  KW   +D      +     RF P   L   S     
Sbjct: 286 PHYGED----KPFDAIVSNPPYSVKWIGSEDPTLINDE-----RFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E I++L  +L
Sbjct: 337 FVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIISLAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IA  + +LS  K++    K Q I+A+        +     I+ D+   +I+ ++ 
Sbjct: 390 FYGTSIAVNILVLSKHKSD---NKTQFIDAS--GIEFYKKETNNNILTDEHIAKIMSMFD 444

Query: 458 SRENGKF-SRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           S+E+  + ++ +DY         + V   +      +   +  L A+I 
Sbjct: 445 SKEDIDYVAKSVDYDAIVENDYNLSVSSYVEAKDTREIIDINDLNAEIK 493


>gi|120400560|gb|ABM21472.1| HsdM1 [Staphylococcus aureus]
          Length = 518

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  EITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|294781970|ref|ZP_06747302.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481781|gb|EFG29550.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 520

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 114/551 (20%), Positives = 211/551 (38%), Gaps = 67/551 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +     A L   IW  A DL G     DF + +L     R +   L    +    +    
Sbjct: 4   KKEQERAELHRTIWSIANDLRGSVDGWDFKQYVLGILFYRYISENLTTYINKGEIEAGNP 63

Query: 63  GGSNIDL--------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             +  DL        +  +      F   SE  ++     +   NL   + +        
Sbjct: 64  DFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLHNIFTNIENS 123

Query: 108 ------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSN 157
                  ++ K +F+D D +S       A     +    +G+ ++      +       +
Sbjct: 124 ANGTESENDLKGLFDDIDVNSNKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTIDAFGD 183

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG+G
Sbjct: 184 AYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPACGSG 235

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +      +         GQE+   T+ +C   M +  ++ D       +I 
Sbjct: 236 SLLLKFAKILGKDNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FDIA 284

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL++      + F   +SNPP+  KWE D   +          RF P   L   S  
Sbjct: 285 HGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQILIND-----SRFSPAGVLAPKSKA 339

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ LP
Sbjct: 340 DLAFIMHSLSWL----APNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCIIQLP 392

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N  K    + +     I++
Sbjct: 393 DNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNSNK----MTEKHINDIVE 445

Query: 455 IYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +  REN ++ S ++DY         +     +        +  +E +   +++    + 
Sbjct: 446 KFTKRENVEYISNLVDYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIQRIVAREEE 505

Query: 514 FWLDILKPMMQ 524
              +I K + +
Sbjct: 506 LRKEIDKIIAE 516


>gi|19746827|ref|NP_607963.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes
           MGAS8232]
 gi|19749065|gb|AAL98462.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes MGAS8232]
          Length = 526

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 122/564 (21%), Positives = 209/564 (37%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        +++ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLDQHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+   ++  +    V G   Y      +   L      N         
Sbjct: 58  NTFTDAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             S I    ++ + +FED D  S        ++   +  + K  + I    + V    + 
Sbjct: 118 GFSDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIGF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDSHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|329732563|gb|EGG68913.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 221/551 (40%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLEIPAFLGTTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +      +   L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEEPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|326201154|ref|ZP_08191026.1| type I restriction-modification system, M subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325988722|gb|EGD49546.1| type I restriction-modification system, M subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 507

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/525 (22%), Positives = 220/525 (41%), Gaps = 55/525 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   +WK A+ L G+     +   I     L+R+    +  R   ++++L
Sbjct: 1   MIMAKLTLQELEANLWKAADILRGELNAAQYKDYIFDLLFLKRMNDEFQTERETKKQEFL 60

Query: 61  AFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAK---- 112
             G    +++  ++      SF+         L + N      L+    +  D  K    
Sbjct: 61  KQGMPAEEVDELLEDPQVYVSFFVPERARWDNLKNLNLNIGPELDKAFKAIEDEPKNVEL 120

Query: 113 -AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEV 170
             +    +F+      +K      +   F  ++L  D +    ++ + Y++LI+ F  E 
Sbjct: 121 IGVLTTTNFNDKERVSDKKLSQLLLL--FDTMQLDADNLESSDMLGDAYQYLIKEFADEG 178

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                +F TP +VV +   +L           P     +YDPT G+GG L  ++ +V D 
Sbjct: 179 GAKGGEFYTPSEVVQVLVNIL----------KPQEGDRIYDPTVGSGGMLIKSIEYVRDH 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L   GQE+   T A+C   M+    +         +I++G T+   +    
Sbjct: 229 GGN---PRNLSLFGQEINLSTWAICKMNMIFHNAKG-------ADIRKGDTIRNPMHLEG 278

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K F   L+NPPF  K    ++A+          RF  G+P  S G + F+ H+   L
Sbjct: 279 GVLKTFDKVLANPPFSLKNWGHEEAM-----ADPYHRFVYGVPPQSYGDLAFVSHMVASL 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G+   V+    LF   A   E +IR+   ++DLIEAIV LP++ F+  +I   
Sbjct: 334 ----NAKGKMGTVVPHGVLFRSGA---EGKIRKGFAKDDLIEAIVGLPSNCFYGASIPAA 386

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           L I++  K++ER+GK+  I+A+  +    N+ +    + D+  + I   + + ++  KFS
Sbjct: 387 LMIINKNKSKERKGKILFIDASQGFVKNGNKNR----LRDEDIKAITQAFDAFDDQEKFS 442

Query: 466 RMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            ++   T       + + R +  S   ++  + ++  DI   K+ 
Sbjct: 443 AVVSLNTIKENDYNLNISRYVDTSEEEEEIDIEQVLQDIRDLKMD 487


>gi|256845972|ref|ZP_05551430.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294784903|ref|ZP_06750191.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
 gi|256719531|gb|EEU33086.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294486617|gb|EFG33979.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
          Length = 520

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 116/553 (20%), Positives = 213/553 (38%), Gaps = 69/553 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++     A L   IW  A DL G     DF + +L     R +   L         E   
Sbjct: 3   SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGN 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-- 110
           S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N  
Sbjct: 63  SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIE 121

Query: 111 -----------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVM 155
                       K +F+D D ++       A     +    +G+ ++      +      
Sbjct: 122 SSANGTESENDLKGLFDDIDVNNNKLGGTVAKRNENLVNLINGVGDMKLGDYQENTIDAF 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   ++ TP++V  L T + L     + K        +YDP CG
Sbjct: 182 GDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDPACG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      +      +         GQE+   T+ +C   M +  ++ D       +
Sbjct: 234 SGSLLLKFAKILGKNNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FD 282

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL++      + F   +SNPP+  KWE D   +          RF P   L   S
Sbjct: 283 IAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKS 337

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ 
Sbjct: 338 KADLAFIMHSLSWL----APNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDGIIQ 390

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K    I +     I
Sbjct: 391 LPDNLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNK----ITEKHIDDI 443

Query: 453 LDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           ++ +  REN ++ S +++Y         +     +        +  +E +    ++    
Sbjct: 444 VEKFTKRENIEYISNLIEYEKIVEENYNLSVSTYVEKEDTSEKVDIVELNKEIERIVARE 503

Query: 512 QSFWLDILKPMMQ 524
           +    +I K + +
Sbjct: 504 EELRKEIDKIIAE 516


>gi|313896404|ref|ZP_07829955.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974828|gb|EFR40292.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 806

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 106/493 (21%), Positives = 205/493 (41%), Gaps = 51/493 (10%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
            ++  L N ++     L G     +F   ++P    +R+    +       E+       
Sbjct: 313 TTSEQLFNHLFGACNILRGPINQDEFKSYVIPILFFKRISDVYDEEYQDALEESGGDEEY 372

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            S  D+ SF    G  + +    S +   +    N +     +       +F  FD  + 
Sbjct: 373 ASAEDMHSFDIPEGCHWDDVRNVSENVGRA--IVNAMSGIERANPLTLSGVFSSFDDGTW 430

Query: 124 IARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             + +     L  + ++ S +++        +M + YE+LI++F     + A +F TPR 
Sbjct: 431 TNKNKLTDERLKDLVEHMSKVKVGNKNYTADIMGDSYEYLIKKFADMSKKNAGEFYTPRS 490

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   LL           P    ++YDP CGTGG   ++++H+ +    +        
Sbjct: 491 IVKLMVRLL----------DPRPGESVYDPACGTGGMCIESIHHMKNSKLTYG-----KI 535

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE    T A+    + +   +          I+QG TL K LF      K F   L+N
Sbjct: 536 YGQENNLSTSAIARMNLYLHGAKDVQ-------IRQGDTLRKPLFLEGGKLKTFDCVLAN 588

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG               + + GR   G P  ++    +L H+   ++      GR A+
Sbjct: 589 PPFGMSKWGA-----DVFDSDQYGRNIWGCPTDANADFAWLQHMIKSMD---KDNGRCAV 640

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF+   G  E  IR+ +++ DL+EAI+ L + +F+ T ++  +  L+ +K  + 
Sbjct: 641 VLPQGVLFH---GGKEGSIRKEIIKADLLEAIITLASGVFYSTGVSACILFLTKKKEHKH 697

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRML---DYRTFG 474
           +G++ LI+ ++++T +R     + I++D+    +   Y   E+  +  +++   D    G
Sbjct: 698 KGRICLIDGSEVYTPMRA----QNILSDENVDTLYQFYADYEDVMERCKVVTIADVEQGG 753

Query: 475 YRRIKVLRPLRMS 487
           +  + V R +   
Sbjct: 754 F-DLNVKRYIEKK 765


>gi|57651317|ref|YP_185366.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87160229|ref|YP_493119.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|151220610|ref|YP_001331432.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161508680|ref|YP_001574339.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141678|ref|ZP_03566171.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|57285503|gb|AAW37597.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126203|gb|ABD20717.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|150373410|dbj|BAF66670.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160367489|gb|ABX28460.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|269940011|emb|CBI48387.1| type I restriction-modification system modification protein
           [Staphylococcus aureus subsp. aureus TW20]
 gi|302750321|gb|ADL64498.1| Type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|320139279|gb|EFW31158.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 518

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|49482660|ref|YP_039884.1| type I restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|297588824|ref|ZP_06947465.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49240789|emb|CAG39454.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|297577335|gb|EFH96048.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312436477|gb|ADQ75548.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193171|gb|EFU23570.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 518

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L                  +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVGKEAK----------VYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|227505724|ref|ZP_03935773.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum
           ATCC 6940]
 gi|227197692|gb|EEI77740.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum
           ATCC 6940]
          Length = 543

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 190/477 (39%), Gaps = 62/477 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  ++L    L+ +  A +  R+ +R +    G S
Sbjct: 17  TTLKELKDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRAELRAEGEERGDS 76

Query: 66  N-------IDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSDNAKA-- 113
                    D++++ +   +     + ++    ++ G +         I    DNA    
Sbjct: 77  EEYIQEDLEDIDAYREKNVFWVDPIARWTFLRDNSKGKSADAGQEYQSIGKLIDNAMKQL 136

Query: 114 IFEDFDF-----SSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRF 166
           + ++        ++  +       L ++   FS      +       ++  +YE+ + +F
Sbjct: 137 MLDNESLLGTLPTNFASESVDQRRLGELIDLFSTTRFTAEGPERARDLLGEVYEYFLEKF 196

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                +   +F TPR VV     +L                 +YDP CG+GG    A   
Sbjct: 197 ARAEGKRGGEFYTPRPVVRTLVEILEPTQG-----------RVYDPCCGSGGMFVQAEKF 245

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +    +  K    L  +GQEL   T  +    + I  + S          +   T ++D+
Sbjct: 246 LE---TTEKDRTALAIYGQELNERTWRMAKMNLAIHAISS-----AGLGERWADTFARDI 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K+  Y ++NPPF  K            +N E  R+  G+P   + +  ++ H+ +KL
Sbjct: 298 HPDKQMDYVMANPPFNIKDWS---------RNEEDTRWKYGVPPKRNANFAWMQHIISKL 348

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G A +V+++  + +  +G  E +IR+ ++E+D++  ++ALP  LF  T I   
Sbjct: 349 ----TPQGEAGVVMANGTMTSNSSG--EGDIRKAMVEDDIVSCVIALPAQLFRGTQIPVC 402

Query: 407 LWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +W  +  K        +R  +V  I+A +L   I    +  R  +D+  ++I D Y 
Sbjct: 403 VWFFAKDKKAGSKGTIDRTNQVLFIDARELGHMI---DRTERTFSDEDIQKIADTYR 456


>gi|15609893|ref|NP_217272.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Rv]
 gi|148662598|ref|YP_001284121.1| putative type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|148823944|ref|YP_001288698.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis F11]
 gi|167968583|ref|ZP_02550860.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|218754497|ref|ZP_03533293.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|253798162|ref|YP_003031163.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 1435]
 gi|254551815|ref|ZP_05142262.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553459|ref|ZP_06442669.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 605]
 gi|289762928|ref|ZP_06522306.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|297635365|ref|ZP_06953145.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 4207]
 gi|297732363|ref|ZP_06961481.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN R506]
 gi|306777037|ref|ZP_07415374.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu001]
 gi|306780940|ref|ZP_07419277.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu002]
 gi|306785567|ref|ZP_07423889.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu003]
 gi|306790162|ref|ZP_07428484.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu004]
 gi|306794246|ref|ZP_07432548.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu005]
 gi|306798664|ref|ZP_07436966.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu006]
 gi|306804519|ref|ZP_07441187.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu008]
 gi|306807440|ref|ZP_07444108.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu007]
 gi|306973152|ref|ZP_07485813.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu010]
 gi|307080861|ref|ZP_07490031.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu011]
 gi|307085452|ref|ZP_07494565.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu012]
 gi|313659695|ref|ZP_07816575.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN V2475]
 gi|2624278|emb|CAA15552.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM
           (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148506750|gb|ABQ74559.1| putative type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|148722471|gb|ABR07096.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis F11]
 gi|253319665|gb|ACT24268.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438091|gb|EFD20584.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 605]
 gi|289710434|gb|EFD74450.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|308214548|gb|EFO73947.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu001]
 gi|308326196|gb|EFP15047.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu002]
 gi|308329750|gb|EFP18601.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu003]
 gi|308333357|gb|EFP22208.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu004]
 gi|308337381|gb|EFP26232.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu005]
 gi|308341044|gb|EFP29895.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu006]
 gi|308346170|gb|EFP35021.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu007]
 gi|308348850|gb|EFP37701.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu008]
 gi|308357414|gb|EFP46265.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu010]
 gi|308361366|gb|EFP50217.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu011]
 gi|308364976|gb|EFP53827.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu012]
 gi|328457935|gb|AEB03358.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 4207]
          Length = 540

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 104/497 (20%), Positives = 191/497 (38%), Gaps = 65/497 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G   
Sbjct: 14  TMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGMEE 73

Query: 67  IDLESFV----KVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +E  +    +  GY  +     +     + NT+            I    D A     
Sbjct: 74  SQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVM 133

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        +     +M  +YE+ +  F 
Sbjct: 134 KANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFA 193

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L                 +YDP CG+GG        +
Sbjct: 194 RAEGKRGGEFFTPPSVVKVIVEVLEP-----------SSGRVYDPCCGSGGMFVQTEKFI 242

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H   P  +  +GQE   ET  +    + I  ++     +     +   T ++D  
Sbjct: 243 YE---HDGDPKDVSIYGQESIEETWRMAKMNLAIHGID-----NKGLGARWSDTFARDQH 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++N PF  K            +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 295 PDVQMDYVMANLPFNIKDWA---------RNEEDPRWRFGVPPANNANYAWIQHILYKL- 344

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRA +V+++  + +   G  E +IR  ++E DL+  +VALPT LF  T I   L
Sbjct: 345 ---APGGRAGVVMANGSMSSNSNG--EGDIRAQIVEADLVSCMVALPTQLFRSTGIPVCL 399

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           W  +  K        +R G+V  I+A +L   +    +  R + +++  +I D + +   
Sbjct: 400 WFFAKDKAAGKQGSIDRCGQVLFIDARELGDLV---DRAERALTNEEIVRIGDTFHAW-- 454

Query: 462 GKFSRMLDYRTFGYRRI 478
            + S+    +   Y  +
Sbjct: 455 -RGSKSAAVKGIMYEDV 470


>gi|269202053|ref|YP_003281322.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262074343|gb|ACY10316.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 518

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGILFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|306826261|ref|ZP_07459595.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431537|gb|EFM34519.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 519

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 203/530 (38%), Gaps = 62/530 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M         L   IWK A+++ G     DF + IL     R +        E    ++ 
Sbjct: 1   MMSEQVQRQELHRKIWKIADEVRGAVDGWDFKQYILGILFYRFISENFKTYIEGGDESIN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------- 109
            + ++      ++          F   S+   S + +     +L + +    D       
Sbjct: 61  YEEISEDLITPEVRDDAIKTKGYFIMPSQLFSSVVKAARQNEHLNTDLKDIFDDIESSAI 120

Query: 110 ------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F+D D  S        E+   L  I +  + ++  + +     +  + Y
Sbjct: 121 GYASEHDIKGLFDDVDTRSNKLGSTVPERNQRLTLILEGIASLDFGNFEDNHIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + S   +   +F TP+ V  L   +++     L K     I  +YDP CG+G  
Sbjct: 181 EYLISNYASNAGKSGGEFFTPQSVSKLLARIVM-----LGKNEKNKINKIYDPACGSGSL 235

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +             +GQE+   T+ +    M +  +  D       +I++G
Sbjct: 236 LLQAKKQFNEHIIEDG------FYGQEINMTTYNLARMNMFLHNINYDK-----FSIERG 284

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL        K F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 285 NTLLDPKHVNDKPFDAIVSNPPYSIKWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 339

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+MH  + L    +  GRAAIV      + G A   E +IR++L++N+ +EA++ LP +
Sbjct: 340 AFIMHSLSYL----SNKGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVEAVIQLPDN 392

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IAT + IL+  K       +  ++A+  +    N      ++ ++   +ILD  
Sbjct: 393 LFFGTSIATCILILAKNKPTT---DILFVDASKQFKKETN----NNVLTEENIEKILDSV 445

Query: 457 VSRENGKF--SRMLDYR-TFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             +EN  +    ++  +       + V   +      +K  +  L  +I 
Sbjct: 446 EKKENEDYFSCMVVQEKVAEADYNLSVSTYVEKEDTREKIDIDVLNKEIA 495


>gi|329118872|ref|ZP_08247568.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465063|gb|EGF11352.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 577

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 103/556 (18%), Positives = 197/556 (35%), Gaps = 83/556 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--- 58
            E      SL + +WK A+ L  +    ++  ++L    L+ +       +  +      
Sbjct: 41  AETQTFLHSLEDTLWKAADKLRSELDAANYKHIVLGLIFLKYISDTFAAQQRKILADLQN 100

Query: 59  -----------YLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTRNN--- 99
                      Y +       LE+ ++   Y      F+         + +     N   
Sbjct: 101 PENPLYLDPALYESPEDYQAALEAELEERDYYTQDNVFWVPRPARWHEIAAAALLENGAE 160

Query: 100 -----LESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIEL--H 146
                  + + +  DNA    E  +      + R+     +   L  + + FS      H
Sbjct: 161 LPWGGRFNSVPALIDNAFDAVEKDNPRLKGVLERISGYGVRGDTLIGLIQLFSQNTFQSH 220

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ + RF     +    + TP+ +V L  ALL               
Sbjct: 221 GTLTAKDILGHVYEYFLGRFALAEGKRGGQYFTPKAIVSLIVALLEPYQG---------- 270

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE    T  +    M I  LE 
Sbjct: 271 -RVYDPAMGSGGFFIQTERFIR---AHQGNTGNISIYGQEKNRTTWKLAAMNMAIHGLEY 326

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFG 325
                 +       T +      ++  + ++NPPF    W  ++ A +         R+ 
Sbjct: 327 ------NFGKGNADTFTAPQHLDQKMDFVMANPPFNASDWWSEELAGD--------PRWQ 372

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+ + L       GR A++L++  + +  +G  E +IRR L++ D
Sbjct: 373 YGTPPEGNANYAWLQHMLHHLAPA----GRMALLLANGSMSSQSSG--EGDIRRALIQAD 426

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+EA++ALP  LF  T I   +WIL   K   ++G+   I+A ++      + + +R + 
Sbjct: 427 LVEAMIALPGQLFTNTQIPACIWILHKAKP--QKGQTLFIDARNMGYL---KDRAQRDLA 481

Query: 446 DDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                +I D Y   +          +               VL P R    ++    +  
Sbjct: 482 PADIERIADTYHRWQKADRYQNQPAYCHAATTEEIARNDY-VLTPGRYVGTVEAEADSEP 540

Query: 499 EADITWRKLSPLHQSF 514
             +   R    L++ F
Sbjct: 541 FVEKMARLTKQLNEQF 556


>gi|167756438|ref|ZP_02428565.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402]
 gi|167703846|gb|EDS18425.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402]
          Length = 516

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 200/525 (38%), Gaps = 63/525 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61
              A L + IWK A ++ G     DF + +L     R +        E    ++    L 
Sbjct: 5   AQRAELQSQIWKIANEVRGSVDGWDFKQYVLGTLFYRFISENFSNYIEGGDDSINYAELD 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
                 +++         F   S+   +   + NT ++L + +A                
Sbjct: 65  DSIITKEIKEDAIKTKGYFIYPSQLFCNIAKNANTNDSLNTDLAKIFSAIESSASGYPSE 124

Query: 109 DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
            + K +F DFD +S        +K   L  + K   G+     +     +  + YE LI 
Sbjct: 125 SDIKGLFADFDTTSNRLGNTVKDKNSRLAAVIKGVEGLSFGKFEENQIDLFGDAYEFLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQSVSKLIAKLAMHGQSTINK--------IYDPAAGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              GQE+   T+ +    M +  +  D       NI  G+TL  
Sbjct: 237 KQFDEHIIEDG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNIALGNTLLN 285

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F  ++ F   +SNPP+   W  + D            RF P   L   S     F++H
Sbjct: 286 PQFGDEKPFDAIVSNPPYSIPWIGNSDPTLINDV-----RFAPAGVLAPKSKADFAFVLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  GRAAIV      + G A   E +IR++L++N+ +EA+++L  +LFF T
Sbjct: 341 ALSYL----SSRGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVEAVISLAPNLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IA  + +LS  KTE    K Q I+A+        +     I+ ++    IL+++ ++++
Sbjct: 394 SIAVNILVLSKHKTET---KTQFIDAS--GEDYFKKETNNNILTEEHINAILELFANKKD 448

Query: 462 -GKFSRMLDYRTFG--YRRIKVLRPLRMSFILDKTGLARLEADIT 503
               S+ +D          + V   +      +   +  L A I 
Sbjct: 449 IDHVSKSVDNSEISLENYNLSVSTYVEAKDTREVIDIVELNAKIK 493


>gi|298504591|gb|ADI83314.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter sulfurreducens KN400]
          Length = 716

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 183/505 (36%), Gaps = 69/505 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              T +       +W+ A+ L G     ++  V L    L+ +  A E  + A  E   +
Sbjct: 8   ANGTAANIGYEAELWQMADALRGSMDAAEYKHVALGLLFLKYISDAFEE-KHAQLESERS 66

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
            G    D + +   A   F+   E   S L +   +       ++  + I   +   K +
Sbjct: 67  QGADPEDPDEYR--ALNIFWVPPEARWSHLKAQAKQPTIGQLVDDAMAGIERDNPALKGV 124

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + +     L        S I +   ++    V+  +YE+ + +F S   + 
Sbjct: 125 LPKEYARPALDKQRLGQL----IDLISNIRVGDAESRAKDVLGRVYEYFLSQFASAEGKK 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--- 230
             +F TPR VV L   ++           P     +YDP CG+ G    ++  +      
Sbjct: 181 GGEFYTPRCVVRLLVEMI----------EPYKG-RVYDPCCGSSGMFVQSVEFIRAHANG 229

Query: 231 -GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G+       +  +GQE    T  +    + IR ++          I  G T   D F  
Sbjct: 230 NGNSGNAKADISIYGQESNYTTWRLAKMNLAIRGIDG--------QIAHGDTFHNDRFPD 281

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +  + L+NPPF    W  D+   +K        R+  G+P   + +  ++ H+   L  
Sbjct: 282 LKADFILANPPFNISDWGGDRLRDDK--------RWQYGVPPTGNANFAWVQHMIYHL-- 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A  +L    +       GE  IR+ +++ +L++ IV LP  LF+ T I   +W
Sbjct: 332 --APKGVAGFIL--GNISLTSETGGEDTIRKGIVDANLVDCIVTLPDRLFYSTPIPAGIW 387

Query: 409 ILSNRKTEERR-----GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-- 461
           IL   +  +R       ++  I+A+ L  S+    +  R + DD   +I   Y + +   
Sbjct: 388 ILRRGRDFDREVNKPNREILFIDASRLGKSV---TRTHRELTDDDLERIACTYRNWQKCS 444

Query: 462 ------GKFSRMLDYRTFGYRRIKV 480
                   F R ++          +
Sbjct: 445 DAYLDVEGFCRRVELEEVIANGYNL 469


>gi|21673506|ref|NP_661571.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
 gi|21646613|gb|AAM71913.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
          Length = 531

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 101/483 (20%), Positives = 190/483 (39%), Gaps = 67/483 (13%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           ++  G+  +L     ++K A+ L G+ + +D+  V L    L+ +  A E    A+  + 
Sbjct: 6   SDKNGNGGNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHKALLAED 65

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
                   +      +A   F+   E   S L +   +       ++    I   + + K
Sbjct: 66  ALAAEDKDEY-----LADNVFWVPKEARWSHLQANAKQPTIGTLIDDAMRAIEKDNASLK 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-------DTVPDRVMSNIYEHLIRR 165
            +    D++         G L  +      +   P       +     ++  +YE+ + +
Sbjct: 121 GVLPK-DYARPALNKVMLGELIDLISGIGHLLPSPSGRGAGGEGQSFDILGRVYEYFLGQ 179

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV +   +L           P     +YDP CG+GG    +  
Sbjct: 180 FAGAEGKRGGEFYTPRSVVRVLVEML----------EPYSG-RVYDPCCGSGGMFVQSEK 228

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V + G        +  +GQE       +    + +R +++D R +         +  KD
Sbjct: 229 FVQEHGGRIG---DIAIYGQESNYTAWRLAKMNLAVRGIDADIRWNNEG------SFHKD 279

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +  Y L+NPPF               +  E  R+  G+P + + +  +L H+   
Sbjct: 280 ELRDLKADYILANPPFNISDWGG-------DRLREDVRWQFGVPPVGNANYAWLQHIYWH 332

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       G A +VL++  + + ++G  E EIRR +LE D ++ +VALP  LF+ T I  
Sbjct: 333 L----APNGTAGVVLANGSMSSNQSG--EGEIRRAMLEADAVDCMVALPGQLFYSTQIPA 386

Query: 406 YLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            LW L+  K           +RRG V  I+A  +   +    + RR ++D++ ++I   Y
Sbjct: 387 CLWFLARNKNPANGKTGGLRDRRGHVLFIDARKMGVLV---DRTRRELSDEEIQKIARTY 443

Query: 457 VSR 459
            + 
Sbjct: 444 HAW 446


>gi|94989256|ref|YP_597357.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS9429]
 gi|94993144|ref|YP_601243.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS2096]
 gi|94542764|gb|ABF32813.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS9429]
 gi|94546652|gb|ABF36699.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS2096]
          Length = 526

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 119/564 (21%), Positives = 208/564 (36%), Gaps = 69/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L       + E +
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLIAVCDNLEEHF 57

Query: 60  LAFGGSNIDLESFVKVAGYS------------FYNTSEYSLSTLGSTNTRNNL------- 100
             F  +    E   +  G              ++     +   L      N         
Sbjct: 58  NTFTDAQKIFEDAYQDQGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G+
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GSLLLNAKKYSHQS-------DTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   +++L+
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDSHIKKVLN 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLSDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVK 537
               + + M Q +     A+  + 
Sbjct: 499 TNAKLDQLMKQLVGTTKEAQDELD 522


>gi|325696152|gb|EGD38043.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK160]
 gi|328946725|gb|EGG40863.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1087]
          Length = 513

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 103/527 (19%), Positives = 208/527 (39%), Gaps = 60/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
              G   + +         F+         + S           +     I   + + + 
Sbjct: 70  ---GYGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEEDNPSLEN 126

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L ++   F+ I+++       ++   YE+ I +F +   + 
Sbjct: 127 VLPQIYASPDLDK----RVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKR 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L                 +YDP CG+GG    +   + +   H
Sbjct: 183 GGEFYTPTSIVKTIVEILKPYRG-----------RVYDPACGSGGMFVQSAKFIEN---H 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L   GQE   +T  +    M+IR +++D          Q ++   DL    + +
Sbjct: 229 SGNINNLSVFGQESNADTWKMAKMNMVIRGIDAD------FGEHQANSFFNDLHPTLKAN 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF           +         R+  G P  S+ +  ++ H+ + ++      
Sbjct: 283 YIMANPPFNISNWGADKLQDD-------IRWKYGTPPNSNANYAWIQHMIHHMD---PSN 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  
Sbjct: 333 GKVGLVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKN 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRM 467
           K  +++GK   I+A ++   I    +K R  +D+  +++ D + + +NG       F   
Sbjct: 391 K--KQKGKTLFIDARNMGEMI---DRKHRDFSDEDIKKLADTFEAFQNGNLEDVKGFCAS 445

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           ++      +   +L P R   I +K        +   R  + L + F
Sbjct: 446 VETAEIAKQDF-ILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELF 491


>gi|319902373|ref|YP_004162101.1| type I restriction-modification system, M subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417404|gb|ADV44515.1| type I restriction-modification system, M subunit [Bacteroides
           helcogenes P 36-108]
          Length = 515

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/525 (22%), Positives = 206/525 (39%), Gaps = 65/525 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAF 62
               L + IWK A ++ G     DF + +L     R +        E    ++    ++ 
Sbjct: 6   QRDELQSTIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTDYIEGGDDSINYANMSD 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SD 109
               I+++         F   S+  ++   S NT  NL + +A+                
Sbjct: 66  DVITIEIKDDAIKTKGYFIYPSQLFVNIAKSANTNPNLNTDLAAIFNAIEGSANGYPSEH 125

Query: 110 NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRR 165
           + K +F DFD +S        EK   L  + K    ++L + +     +  + YE LI  
Sbjct: 126 DIKGLFADFDTTSNRLGNTVEEKNKRLAAVIKGVECLDLGNFEDNKIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP++V  L   L L    ++ K        +YDP CG+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQNVSKLIAQLALSGQTSVNK--------IYDPACGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                             GQE+   T+ +    M +  +  D       +I  G TL   
Sbjct: 238 QFDAHLIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALGDTLINP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
            +  ++ F   +SNPP+   W    D            RF P   L   S     F++H 
Sbjct: 287 QYGDEKPFDAIVSNPPYSVNWVGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVLHA 341

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L       GRAAIV      + G A   E +IR++L++N+ +E +++LP +LF+ T+
Sbjct: 342 LSYLSAR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFYGTS 394

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           IA  + +LS  KT+    K Q I+A+        +     ++ D    +I+D++  +E  
Sbjct: 395 IAVNILVLSKHKTDT---KTQFIDAS--GEEFFKKETNNNVLTDRHIAKIIDLFNKKEPV 449

Query: 463 KFSRM-LDY---RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++  + +D       GY  + V   +      +   + +L ADI 
Sbjct: 450 EYVAISVDNSKIEENGY-NLSVSSYVESEDKREVIDIVKLNADIA 493


>gi|312963116|ref|ZP_07777601.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6]
 gi|311282627|gb|EFQ61223.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6]
          Length = 507

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/543 (21%), Positives = 212/543 (39%), Gaps = 57/543 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
               +   +   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKVNQDDINKALWAACDIFRGTISADTYKDFILTMLFLKYISDVWQDHYDNYKKEYGDE 61

Query: 63  GGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                ++   E FV     SFY   E+             L +   +      D  K++F
Sbjct: 62  PELIEEMLKNERFVLSRDASFYTLYEHRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L  + +NF+   + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDKLGEEKQKNTILRHLMENFARAELNLKPSRVGSLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+   L      V + 
Sbjct: 182 GQKAGEFYTPPEVSELIAELL----------DPQPGDTICDPACGSASLLMKCGRKVREH 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S  +       +GQE    T ++    M +   +       +  I+ G TL       +
Sbjct: 232 HSSKQY----ALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTLRNPKLLDQ 280

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F    +NPPF       +     E ++   GRF  G+P  + G   F++H+   
Sbjct: 281 NGQLLKFDIVTANPPFSLDKWGHE-----EAEHDPFGRFNRGIPPKAKGDFAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR A+V+    LF G +   E +IR+ L+E +L++A++ LP  LF+ T I  
Sbjct: 336 LKAKT---GRMAVVVPHGVLFRGSS---EGKIRQKLIEENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + + S  KT+E    V  I+A+  + + +N    + ++ ++Q   IL  Y  R N  K+
Sbjct: 390 AILVFSKAKTDE---NVLFIDASRDFKAGKN----QNLLGEEQINNILLTYRHRINSDKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S     +        +  P  +    ++T +  L      ++L     +  L + + + +
Sbjct: 443 SHRTSLQEIRDNDYNLNIPRYVDTFEEETEIDLLAVRKERQQLKTQLAALELQMDEYLKE 502

Query: 525 QIY 527
             Y
Sbjct: 503 LGY 505


>gi|148656810|ref|YP_001277015.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148568920|gb|ABQ91065.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 523

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 115/482 (23%), Positives = 187/482 (38%), Gaps = 62/482 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L  ++W  A  + G      F   ILP   L+RL    +     + + Y   G     
Sbjct: 5   STLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFDDEIKRLSDVYGNCGLVLHL 64

Query: 69  LESFVKVAGYS---FYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFEDFD 119
           LE   +        FY         +     R       +    +A  +   + +    D
Sbjct: 65  LEQERERGQVHLVRFYIPENARWKAIRQRGVRTLGQFLTDAVRDVARENPALQGVINMVD 124

Query: 120 FSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F++T    R+     L K+    S   L    V   ++   YE+L+R+F     + A +F
Sbjct: 125 FNATTAGQRIIPDDHLSKLIDVLSRHRLGLQDVEPDILGRAYEYLLRKFAEGQGQSAGEF 184

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  L   LL           P    T+YDPTCG+GG L      + +        
Sbjct: 185 YTPGEVAILMAQLL----------DPQPRMTVYDPTCGSGGLLIKCHLRLLETHGVRSGR 234

Query: 238 PI---------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      L   GQE+ P T A+     +I  LE+D R         G T+    F 
Sbjct: 235 KFSTATPGVAPLRLFGQEINPATFAMARMNAVIHDLEADIRI--------GDTMRHPAFV 286

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F    +NP + +K+  +       ++N    RF  G+P  S     +L H+ 
Sbjct: 287 DAAGRLQTFDRVTANPMWNQKFPVET------YENDPYERFTLGIPPHSSADWGWLQHML 340

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400
             L       G+ A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +LF+ 
Sbjct: 341 ASLHER----GKMAVVLDTGAVSRGSGNQGSNRERDIRKAFVERDLIEAVILLPENLFYN 396

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T     + +++ RK   RRG++ LINA+  +   R +      + ++   +I DIY    
Sbjct: 397 TTAPGIILVVNRRKA--RRGEILLINASQQFAKGRPK----NYLTEEHIARIADIYHQWR 450

Query: 461 NG 462
            G
Sbjct: 451 VG 452


>gi|307711302|ref|ZP_07647723.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK321]
 gi|307616953|gb|EFN96132.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK321]
          Length = 533

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 110/535 (20%), Positives = 206/535 (38%), Gaps = 63/535 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M++   S   L   +W  A+ L G  +  ++   +L     + L           L+ T 
Sbjct: 1   MSQTDLSR-ELYQSLWNAADILRGQMEANEYKSYLLGLIFYKYLSDNILQAVCDNLDETF 59

Query: 53  SAVREKYLAFGGSNIDL---ESFVKVAGYSFYNTSE--YSLSTLGSTNTRNNL------- 100
            + ++  L +  +  D    E  ++V         E   + + L  +             
Sbjct: 60  ESFQQAQLLYEENFADADVSEDLIEVLNDDLGYVIEPSLTFTKLVQSIHEGTFQLESLAQ 119

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNI 158
               I   ++  + +FED D  +             I +    + +L+       ++ + 
Sbjct: 120 SFRDIEQANEKFENLFEDIDLYAKKLGNTPQKQNKTISEVMKQLNDLNVSGHAGDILGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F S+  + A +F TP+ V HL T ++    +           ++YDPT G+G 
Sbjct: 180 YEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFAGRE------HQKGMSVYDPTMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +             +  +GQEL   T  +    M++  +        + ++  
Sbjct: 234 LLLNAKRYSKQA-------STISYYGQELITSTFNLARMNMMLHGV-----AIENYHLSN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW  D   +    ++     +G  L   S    
Sbjct: 282 HDTLDEDWPTTEPTDFDGVLMNPPYSLKWSADSGFL----QDPRFSSYGV-LAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGFYHLK----HSGVMAIVLPHGVLFRGAA---EQKIRQHLLEEGAIDTVIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + +D   +IL+ Y
Sbjct: 390 IFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFEKGKN----QNNMTEDHIAKILETY 442

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             REN  KF+ +  +         +  P  +    ++  +   +      ++   
Sbjct: 443 QKRENVEKFAHLASFEEIVENDYNLNIPRYVDTFEEEPVVPLADLADQLAEIDKE 497


>gi|304437971|ref|ZP_07397916.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304369055|gb|EFM22735.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 538

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 113/532 (21%), Positives = 207/532 (38%), Gaps = 68/532 (12%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   S+A +     IW  A  LWG     ++ KVI+    LR +    E   + +  +
Sbjct: 36  MAKSKTSSAKIGFEKQIWDAAVKLWGHISAAEYRKVIVGLIFLRYISSVFEKRYAELVAE 95

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNA 111
                G   + +     A   F+         + S           +     I + +   
Sbjct: 96  -----GDGFEDDPDAYEAENIFFVPENARWKLIASKAHTPEIGTVIDEAMRAIEADNKTL 150

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K +      S  + +     +L ++   F+ +++        ++   YE+ I +F +   
Sbjct: 151 KNVLPKNYASPDLDK----RVLGEVVDLFTNMDMESAENTKDLLGRTYEYCIAQFAAYEG 206

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  +V    A+L           P     +YDP CG+GG    +   +   G
Sbjct: 207 KKGGEFYTPASIVKTIVAVL----------RPFSNCRVYDPCCGSGGMFVQSAKFIEVHG 256

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +   GQE  P+T  +    + IR +++      +    Q  T   DL+   +
Sbjct: 257 GRRGA---VTVFGQESNPDTWKMAKMNLAIRGIDA------NLGEYQADTFFNDLYANLK 307

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF K           + +  E  R+  G+P   + +  ++ H+ + L+    
Sbjct: 308 ADFIMANPPFNKDDWG-------QPQLKEDARWKYGVPPAGNANYAWIQHMISHLKP--- 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+  +VL++  L       GE EIRR ++E DL+E I+ALP  LF+   I   LW ++
Sbjct: 358 -NGKIGLVLANGALST--QTGGEGEIRRKIIEADLVEGIIALPDKLFYSVTIPVTLWFIT 414

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------- 463
             K  +++GK   I+A  +   +    +K R  +D+   +I D +V+ +NG+        
Sbjct: 415 RNK--QQKGKTLFIDARKMGAMV---DRKHRDFSDEDIDKIADTFVAFQNGRLDDVKGFC 469

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            F+ + D     Y    VL P R   I ++        D   R    L + F
Sbjct: 470 AFASLDDIAAQDY----VLTPGRYVGIEEQEDDDEPFEDKMKRLTGELSELF 517


>gi|85859881|ref|YP_462083.1| type I restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
 gi|85722972|gb|ABC77915.1| type I restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
          Length = 515

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 105/531 (19%), Positives = 194/531 (36%), Gaps = 61/531 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M        +    ++K A+ L  +    ++  ++L    L+ +  + E     ++E   
Sbjct: 1   MANNNNKTEAFEKTLFKAADKLRKNMDAAEYKHIVLGLIFLKYISDSFEALYEKIKEGKG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
            F G++ +     + A   F+       S L S           ++    I   +   K 
Sbjct: 61  DFEGADPEDPDEYR-AENVFFVPQAARWSYLHSRAKLPSIGKDVDDAMEAIEKENQTLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSE 172
           I         + +    GL          I L  +      ++  +YE+ +  F +   +
Sbjct: 120 ILPQVYARPNLDKAALGGL----IDLVGNIALGTEAAKAKDLLGRVYEYFLGEFANAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP+ +V L   ++                 +YDP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPKSIVRLMVEMIEPFKG-----------RVYDPCCGSGGMFIMSERFVEN--- 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +   GQE    T+ +C   + IR ++    +  ++      +   D+    + 
Sbjct: 222 HQGKVDDISIFGQESNQTTYRLCRMNLAIRGIDGSQVKWNTEG-----SFLNDVHKDLKS 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +             R+  G+P+ ++ +  +L H+   L    + 
Sbjct: 277 DFILANPPFNDSDWSGQLLQSD-------PRWKYGVPQAANANFAWLQHMIYHL----SP 325

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G  A VL++  L      + E EIR+ L+ENDL++ IVALP  LF+ T I   LW LS 
Sbjct: 326 KGIMACVLANGSL--SSQTNNEGEIRKSLVENDLVDCIVALPKQLFYNTGIPACLWFLSR 383

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------EN 461
           ++      +R  ++  I+A++       E +  R  +DD   +I   Y          E+
Sbjct: 384 KRAGNGDRKRSSEILFIDASEEGFM---EDRTHRAFSDDDIAKIAGTYHEWRKQGGKYED 440

Query: 462 GK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            + F +  D          ++ P R   I D+        D     LS L 
Sbjct: 441 VRGFCKSADIEEITKHNFVLM-PGRYVGIKDEEDDGIPFEDKMAGYLSELS 490


>gi|288457860|ref|YP_003422728.1| type I restriction-modification system, M subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|285026835|gb|ADC33925.1| type I restriction-modification system, M subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 515

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 118/530 (22%), Positives = 203/530 (38%), Gaps = 64/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A+L   IW  A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MT-AQAQRAALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEAGDESID 59

Query: 59  YLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
           Y A   +    D++         F   S+   +     NT ++L + +A           
Sbjct: 60  YAALSDNVITDDIKDDAIKTKGYFIYPSQLFANVADDANTNDSLNTDLARIFTAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + + +F DFD +ST       EK   L K+ K  + ++          +  + Y
Sbjct: 120 GYPSEQDIRGLFADFDTTSTRLGNTVTEKNSRLAKVLKRVAELDFGDFHNSQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQKKVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       NIQ+G
Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIQRG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL++  F   + F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 281 DTLTQPHFQDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      +   A   E +IR++L++N+ +E ++AL ++
Sbjct: 336 AFVLHALSYL----SAKGRAAIVCFPGIFYRDGA---EKKIRKYLVDNNYVETVIALASN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +L+  KT      +Q I+A+        +     ++ D    ++++I+
Sbjct: 389 LFYGTTIAVTILVLAKNKTHAA---IQFIDAS--GEEFFKKATNTNLMTDHHIARVIEIF 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
             +E+    +  + Y T   R     V   +      +   +  L  +I+
Sbjct: 444 DRKEDVDHVAASVPYETIVERDYNLSVSSYVEPRDTREVVNINELNEEIS 493


>gi|307249502|ref|ZP_07531490.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858495|gb|EFM90563.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 517

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 122/527 (23%), Positives = 211/527 (40%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E  KY A+ 
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             + ++    E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 124 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G+TL
Sbjct: 236 AKKQFDDHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGNTL 284

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWIGDGDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N       + D+   +I+ ++  +
Sbjct: 393 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNELTDEHIAEIIKLFSDK 445

Query: 460 EN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +     +M+D +T         V   +      +   +  L A+I+
Sbjct: 446 ADVDHLVQMVDNQTIADNDYNLAVSSYVEAKDEREVINITELNAEIS 492


>gi|332983076|ref|YP_004464517.1| type I restriction-modification system, M subunit [Mahella
           australiensis 50-1 BON]
 gi|332700754|gb|AEE97695.1| type I restriction-modification system, M subunit [Mahella
           australiensis 50-1 BON]
          Length = 521

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 118/552 (21%), Positives = 206/552 (37%), Gaps = 71/552 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------RSA 54
                A L   IW  A +L G     DF + +L     R +   +            R  
Sbjct: 6   KEQERAELHRTIWNIANNLRGSVDGWDFKQYVLGMLFYRYISENITAYINAGEWAAGRPE 65

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
                ++   +    E  V+  G+    +  +      + N  N  E+    F       
Sbjct: 66  FNYAKISDAEAEKIREDLVEAKGFFILPSELFENVRARAKNDENLNETLERVFRNIEASA 125

Query: 108 -----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSNI 158
                  + K +F+D D +S       A    K+ +    I E+      D       + 
Sbjct: 126 QGTESEPDFKGLFDDLDVNSNKLGSTVAKRNEKLAQLLDSIAEMKLGDYKDNTIDAFGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG+G 
Sbjct: 186 YEYLMGMYASNAGKSGGEYYTPQEVSELLTRLTLVGKTEVNK--------VYDPACGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +       K    L   GQE+   T+ +C   M +  ++ D       NI  
Sbjct: 238 LLLKFAKILG------KDNVRLGFFGQEINITTYNLCRINMFLHDIDYDK-----FNIAL 286

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       + F   +SNPP+   W+ D D +          RF P   L   S   
Sbjct: 287 GDTLTDPKHRDNEPFEAIVSNPPYSISWKGDSDPILIND-----PRFAPAGVLAPKSKAD 341

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP 
Sbjct: 342 LAFIMHCLAWLAA----NGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNYIDCIIQLPD 394

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IAT + +L   K   R      I+A+  +    N       +       IL+ 
Sbjct: 395 NLFYGTSIATCIMVLKKSK---RDNSTLFIDASKEFVKATN----NNKLTQKNIETILNA 447

Query: 456 YVSRENGKF-SRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           +  R++ ++ ++++           + V   +      +K  +  L A+I  +++    Q
Sbjct: 448 FKDRKDIEYLAKLVPNSKIAEQDYNLSVSTYVEKEDTREKIDITALNAEI--KRIVAREQ 505

Query: 513 SFWLDILKPMMQ 524
               +I K + +
Sbjct: 506 VLRYEIDKIIAE 517


>gi|15926109|ref|NP_373642.1| type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus N315]
 gi|13700322|dbj|BAB41620.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus N315]
          Length = 518

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 VNIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|320326658|gb|EFW82706.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 574

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 183/479 (38%), Gaps = 61/479 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           ++  + +   L   +W  A+ L  +    ++  ++L    L+ +  +    R+ ++    
Sbjct: 47  ISSTSSTLQDLEKTLWATADKLRANMDAAEYKHIVLGLIFLKYISDSFAGRRAELKRRFA 106

Query: 57  ----EKYLAFGGSNIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTRNNLE------- 101
               + YL    SN+      +   Y     F+         L +   + ++        
Sbjct: 107 DASDDYYLGNDDSNLLAGELEERDYYKEVNVFWVPEAARWEALRAAAKQADIGKRIDEAL 166

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYE 160
           + I + +   K I +     + +      G L ++    S I    +      ++  +YE
Sbjct: 167 AAIEAENQQLKNILDKRYARAQLP----DGKLGELVDMISIIGFGDNAHQARDLLGQVYE 222

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + +F S   +    F TP  +V    A+L                 +YDP CG+GG  
Sbjct: 223 YFLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHQG-----------KVYDPCCGSGGMF 271

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             +   +   G        +  +GQE  P T  +    + IR +      D +   +   
Sbjct: 272 VQSEKFIEAHGGKLG---DVSIYGQESNPTTWRLAAMNLAIRGI------DFNLGKEPAD 322

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +  ++  +  R  + L+NPPF           +         R+  G P   + +  +L 
Sbjct: 323 SFVRNQHSDLRADFVLANPPFNVSDWWHGSLEDD-------PRWVYGTPPPGNANYAWLQ 375

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+      GRA IV+++  + + +    E +IRR ++E D++E +VALP  LFF 
Sbjct: 376 HMLFHLK----STGRAGIVMANGSMSSSQNS--EGDIRRAMIEADVVEVMVALPGQLFFN 429

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T I   LW L+ +K  +R G+V  I+A  L    RN  + +  + D    +I     + 
Sbjct: 430 TQIPACLWFLAKQKN-KRPGEVLFIDARKLG---RNVSRVQIELRDSDIERIAQTVANW 484


>gi|237738765|ref|ZP_04569246.1| type I restriction-modification system [Fusobacterium sp. 2_1_31]
 gi|229423868|gb|EEO38915.1| type I restriction-modification system [Fusobacterium sp. 2_1_31]
          Length = 520

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 114/551 (20%), Positives = 211/551 (38%), Gaps = 67/551 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +     A L   IW  A DL G     DF + +L     R +   L    +    +    
Sbjct: 4   KKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGILFYRYISENLTNYINKGEIEAGNP 63

Query: 63  GGSNIDL--------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             +  DL        +  +      F   SE  ++     +   NL   + +        
Sbjct: 64  DFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLHNIFTNIENS 123

Query: 108 ------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSN 157
                  ++ K +F+D D +S       A     +    +G+ ++      +       +
Sbjct: 124 ANGTESENDLKGLFDDIDVNSNKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTIDAFGD 183

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG+G
Sbjct: 184 AYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPACGSG 235

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +      +         GQE+   T+ +C   M +  ++ D       +I 
Sbjct: 236 SLLLKFAKILGKDNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FDIA 284

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL++      + F   +SNPP+  KWE D   +          RF P   L   S  
Sbjct: 285 HGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQILIND-----SRFSPAGVLAPKSKA 339

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ LP
Sbjct: 340 DLAFIMHSLSWL----APNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCIIQLP 392

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N  K    + +     I++
Sbjct: 393 DNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNSNK----MTEKHINDIVE 445

Query: 455 IYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +  REN ++ S ++DY         +     +        +  +E +   +++    + 
Sbjct: 446 KFTKRENVEYISNLVDYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIQRIVAREEE 505

Query: 514 FWLDILKPMMQ 524
              +I K + +
Sbjct: 506 LRKEIDKIIAE 516


>gi|24636602|dbj|BAC22943.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus]
          Length = 518

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 125/540 (23%), Positives = 214/540 (39%), Gaps = 72/540 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  + + ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILSKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMIHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y  +E   K+S     +        +  P    ++      A  + D   + L  + + 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIP---RYVDTFEEEAPFDLDQVQQDLKNIDKE 497


>gi|226225491|ref|YP_002759597.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
 gi|226088682|dbj|BAH37127.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
          Length = 538

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 121/547 (22%), Positives = 203/547 (37%), Gaps = 74/547 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MTE   +   L N +WK A+DL G     DF   +L F  LR L    E   R  + + Y
Sbjct: 1   MTE--ANQKQLGNTLWKIADDLRGAMDADDFRDYMLSFLFLRYLSDNYEAAARKELGKDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT-----------SEYSLSTLGSTN 95
                        L +  +  D+  F K      +             S           
Sbjct: 59  PDTGGDARKVPLELWYANNRDDIPEFEKQMRRKVHYVIKPAHLWNSVASMARTQNEDLLK 118

Query: 96  TRNNLESYI--ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T      YI   SF    + +F + D  S       A    K+C     I   L+  +  
Sbjct: 119 TLQEGFKYIETESFESTFQGLFSEIDLGSPKLGKTYADRNAKLCTVIQKIAEGLNNFSAD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++          +   +  + D
Sbjct: 179 VDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLENVMD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    V+               GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRKRVSQADGTIG-----RIFGQEKNITTYNLARMNMLLHGV-----KD 288

Query: 272 LSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  +    +         F   ++NPPF  +W+  +         G+  R
Sbjct: 289 TEFEIFHGDTLLNEWDMLRELNPARKPLFDAIVANPPFSYRWDPGE-------SIGDDVR 341

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR  LL
Sbjct: 342 FKSHGLAPKSAADFAFLLHGFHYLK----DEGVMAIILPHGVLFRGGA---EERIRTKLL 394

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA   +      GK++ 
Sbjct: 395 KDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAAHFEK----GKRQN 447

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLE 499
            +  +   +I+D Y  R E  ++SR ++          + + R +  +   ++  LA   
Sbjct: 448 QLKPEHIGKIIDTYQHRTEAPRYSRRVEMDEIEKNDFNLNISRYISTAVAEEEIDLAATH 507

Query: 500 ADITWRK 506
           A++   +
Sbjct: 508 AELAVIE 514


>gi|329313150|gb|AEB87563.1| Type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 518

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  F +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGHFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|254506511|ref|ZP_05118653.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 16]
 gi|219550685|gb|EED27668.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 16]
          Length = 514

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 207/517 (40%), Gaps = 69/517 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLAFGGSNI 67
           +W  A  L G+    DF   IL     + L   L      +  +        +       
Sbjct: 13  LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGITFIGAVDNKELLN 72

Query: 68  DL-ESFVKVAGYSFYN------------TSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           DL E  V+  GY                  E+ +  L  T       +  A  +D+   +
Sbjct: 73  DLREECVENLGYFIAPKQLFSSLAGRGKKQEFIIDELDRTLADIEQSTTAADSADDFNGL 132

Query: 115 FEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FE+ D +S+        +  L+ ++  +   I+ H +     ++ + YE+LI +F S   
Sbjct: 133 FEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASGAG 192

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   L+    +         ++++YDPTCG+G  L      V    
Sbjct: 193 KKAGEFYTPQQVSKILAKLVSLNGN---------VKSVYDPTCGSGSLLLRVAREVGSHN 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L   GQE  P T+ +    ML+  +  D       +I+   TL   +   +R
Sbjct: 244 --------LEFCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLEQR 290

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF   W  ++  +  E +  + G+  P     S     F++H+ ++L    N
Sbjct: 291 FDAVVANPPFSANWSANELHLNSE-RFADYGKLAP----KSKADFAFVLHMIHQL----N 341

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF T I T + + 
Sbjct: 342 ETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFFGTGIPTCILVF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----GKFSR 466
              +  +    V  I+A++ +      GK +  + +D   +I++ Y  RE+       ++
Sbjct: 399 KKNRKND--DNVLFIDASNHFEK----GKAQNFMRNDDVERIVEAYSKRESVEKFAHVAK 452

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +++     Y  + + R +      +   L  + +++ 
Sbjct: 453 LIEIEENDY-NLNIPRYVDTFEEEEPVALDTVASELA 488


>gi|75907382|ref|YP_321678.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75701107|gb|ABA20783.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 516

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 126/519 (24%), Positives = 206/519 (39%), Gaps = 54/519 (10%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RS 53
           M E  G+   SL N+IW  A  + G  +   +   ILP    +RL    +        + 
Sbjct: 1   MGERNGNGDKSLENWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAEKV 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDN 110
             R K       + +L  F         +   +S+    S      L  Y+      +  
Sbjct: 61  GSRAKAFKLVAMDHNLVRFYLPLQPQNPDDPVWSVIRKLSDKIGEKLTDYLREIAKANPL 120

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              I    DF++T    R      L  + +  S   L    V   ++   YE+LIR+F  
Sbjct: 121 LNGIINRVDFNATTHGQRDLDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP++V  +   ++           P    T+YDP CG+ G L      + 
Sbjct: 181 GSGQSAGEFYTPKEVGLIMAKIM----------QPEPGMTIYDPCCGSAGLLIKCQLVLQ 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           +     +    L  +GQE  P T A+    M+I  +E             G T     F 
Sbjct: 231 ESQGATEKFAPLQLYGQEYTPNTWAMANMNMIIHDMEGKIEI--------GDTFRHPKFM 282

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLA 343
                 +F   ++NP + +KW       EK++   ELGRF  G     S     ++ H+ 
Sbjct: 283 QAGKLAQFERVVANPMWNQKW-----FTEKDYDGDELGRFPKGAGYPGSSADWGWVQHIL 337

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400
             L    +  G+AAIVL +     G   +    E E+R+W +E DLIE ++ LP +LF+ 
Sbjct: 338 ASL----DKTGKAAIVLDTGAASRGSGNANKNKEKEVRKWFVEQDLIEGVIYLPQNLFYN 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSR 459
           T+    L  L+  K +ER+GK+  INA+ ++      G  +  I D++  +I + +   R
Sbjct: 394 TSAPGILLFLNRAKPKERQGKLFFINASLVFAK----GDPKNYIPDEEIERIANTFLTWR 449

Query: 460 ENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           E  KFS ++  D        I   R + ++   D   +A
Sbjct: 450 EEEKFSLIVYKDKIAHNDYNISPSRYIHITEEEDFRPIA 488


>gi|213971212|ref|ZP_03399330.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv.
           tomato T1]
 gi|301382340|ref|ZP_07230758.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062746|ref|ZP_07254287.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|213924081|gb|EEB57658.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv.
           tomato T1]
          Length = 540

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 205/549 (37%), Gaps = 79/549 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY--- 59
              +   L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y   
Sbjct: 2   NDTNRKQLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDYPQL 61

Query: 60  ---------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--------- 95
                          + +  +  D+ +F K      +   E +       N         
Sbjct: 62  PADVRLKTDGPTPLQIWYEENEADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQSGEL 121

Query: 96  --TRNNLESYIA--SFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPD 148
             T      YI   SF    + +F + +  S       +++   L  I +  +   L+  
Sbjct: 122 LTTLQAGFKYIETESFESTFQGLFSEINLGSEKLGRTYVDRNAKLCTIIQKIAE-GLNEF 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F +   + A +F TP+ +  + +A++              + +
Sbjct: 181 SSDIDSLGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSHEPKTGPKRRLES 240

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    V   G       I   +GQE    T+ +    ML+  +    
Sbjct: 241 VLDFACGSGSLLLNVRKRVGPHG-------IGKIYGQEKNITTYNLARMNMLLHGV---- 289

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            +D    I  G TLS D    ++        F   ++NPPF  +W    D  E   ++  
Sbjct: 290 -KDTEFEIYHGDTLSNDWDVLRQLNPAKKPTFDAIVANPPFSYRW----DPTEAMAEDVR 344

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 GL   S     FL+H  + L+      G  AI+L    LF   A   E  IR  
Sbjct: 345 FKN--HGLAPKSAADFAFLLHGFHFLK----DDGVMAIILPHGVLFRSGA---EERIRTK 395

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL++  I+ ++ LP++LF+ T I   + IL   K   +   V  INA D +T     GK+
Sbjct: 396 LLKDGHIDTVIGLPSNLFYSTGIPVCILILKKCK---QTDDVLFINAADHFTK----GKR 448

Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR 497
           +  + D+   +I+  Y +RE   +++R ++          + + R + M     +  L  
Sbjct: 449 QNQLTDEHIAKIIKAYQTREPEPRYARRVEMEEIEKNAYNLNISRYISMVSAETEIELQA 508

Query: 498 LEADITWRK 506
           +  ++T  +
Sbjct: 509 VNDELTTLE 517


>gi|170761794|ref|YP_001787475.1| type I restriction-modification system, M subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408783|gb|ACA57194.1| type I restriction-modification system, M subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 511

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 113/549 (20%), Positives = 215/549 (39%), Gaps = 70/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+  +   A+L   +W  A DL G+ +  +F   IL     R L   +E     + ++  
Sbjct: 1   MSVSSEQQANLHARLWDIANDLRGNMEANEFKNYILELIFYRYLSEKVEGRAEDLLKEDN 60

Query: 61  AFGGSNIDLESFVKVA--------GYSF------------YNTSEYSLSTLGSTNTRNNL 100
                  + E + +          GY                T  + +  L         
Sbjct: 61  ISYREAWEDEEYREALQEELLAQIGYFIEPKYLFSSLMKEIETGNFDVEMLQGAINDITE 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +      D+   +F+D D +ST    +   ++ L+ K+  N S I+   D     V+ +
Sbjct: 121 STLGHKSEDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  +   L+      L        +++YDP CG+G
Sbjct: 181 AYEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSG 232

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L                  +   +GQEL   T+ +    ML+  +  +       +I+
Sbjct: 233 SLLLRVSKEA----------NVRYFYGQELTSTTYNLARMNMLLHDISYE-----RFDIR 277

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              TL        +F   ++NPP+  KW  D   ++ E +    G+  P     S     
Sbjct: 278 NDDTLENPEHIDMKFDAVVANPPYSAKWSADNKFLDDE-RFSAYGKLAP----KSKADYA 332

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396
           F+ H+  +L    N GG  A+VL    LF G A   E  IR++L+ E + ++ I+ LP +
Sbjct: 333 FVQHMIYQL----NDGGTMAVVLPHGVLFRGAA---EGVIRKYLIKEKNYLDGIIGLPPN 385

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + +   +K  E    V  I+A+  +   +N    + ++ D    +I+  Y
Sbjct: 386 IFFGTSIPTAILVF--KKCRENSDNVIFIDASREFEKGKN----QNVLRDCDVEKIISTY 439

Query: 457 VSRENGK---FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--DITWRKLSPLH 511
           V RE      +   LD        + + R +      +   +  +++  +   +++  + 
Sbjct: 440 VKREAVDKYAYKATLDEIKENDYNLNIPRYVDTFEEEEPVDIKEVKSKIEKVDKEIEEID 499

Query: 512 QSFWLDILK 520
           +   + + +
Sbjct: 500 KELEVYLKE 508


>gi|150398838|ref|YP_001322605.1| type I restriction-modification system, M subunit [Methanococcus
           vannielii SB]
 gi|150011541|gb|ABR53993.1| type I restriction-modification system, M subunit [Methanococcus
           vannielii SB]
          Length = 520

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 117/558 (20%), Positives = 217/558 (38%), Gaps = 67/558 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSAV 55
           M       A L   IW+ A +L G     DF + +L     R +   L     E  R A 
Sbjct: 1   MISKEQERAELHRTIWQIANNLRGSVDGWDFKQYVLGMLFYRFISENLTNYINEEERKAG 60

Query: 56  REKYLAFGGSNIDLESFVK---VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
            + +     S+ + E   K   +    +   SE   +   +     NL   ++       
Sbjct: 61  NKDFDYSKLSDKEAEFGRKDTVIEKGFYILPSELFYNVTKNARNDPNLNETLSKVFKNIE 120

Query: 108 --------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHP-DTVPDRVM 155
                    D+ K +F+D D +S        ++   L  + +  + ++L           
Sbjct: 121 SSAKGFESEDDLKGLFDDLDVNSNKLGSTVEQRNKQLVNLLEAINELKLGNYSENTIDAF 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + +   +   +F TP++V  L   + +     + K        +YDPTCG
Sbjct: 181 GDAYEYLMTMYAANAGKSGGEFYTPQEVSELLAKITIVGKKDVNK--------VYDPTCG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      +               +GQE+   T+ +C   M +  +  +       +
Sbjct: 233 SGSLLLKFAKVLGKENVRQG------FYGQEINLTTYNLCRINMFLHDINYN-----HFD 281

Query: 276 IQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL+    F  + F   +SNPP+  KWE D + +          RF P   L   S
Sbjct: 282 IAHGNTLTDPKHFDDEPFDAIVSNPPYSIKWEGDSNPILIND-----PRFSPAGVLAPKS 336

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+   L       G AAIV     L+ G A   E +IR++L++N+ ++ ++ 
Sbjct: 337 KADLAFTMHMLAWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNYVDCVIQ 389

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP+DLFF T IAT + +L   K +    K   I+A+  +    N+ K    ++D+   +I
Sbjct: 390 LPSDLFFGTTIATCIIVLKKSKID---NKTLFIDASKEFVRAGNKNK----LSDENINKI 442

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           LD +++R +   FS+++D          +     ++    +  +   E +    ++    
Sbjct: 443 LDAFLNRNDIEYFSKLVDNTDISKNDYNIAVSSYVTVEDTREIIDIKELNKKISEIVKRQ 502

Query: 512 QSFWLDILKPMMQQIYPY 529
               ++I   + +     
Sbjct: 503 NELRIEIDSIVEEIEGDK 520


>gi|332289039|ref|YP_004419891.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330431935|gb|AEC16994.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 511

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 119/526 (22%), Positives = 206/526 (39%), Gaps = 62/526 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      + L   IW+ A D+ G     DF + +L     R +        +     Y 
Sbjct: 1   MT-SAQQRSELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFASFFNDEETNYA 59

Query: 61  AFGGS---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------- 107
                   N   +  +KV GY  Y  S+  ++ + + N+  +L + + +           
Sbjct: 60  DLTDDVITNEIKDDVIKVKGYFIY-PSQLFVNIVKNANSNEHLNTDLKNIFNEIEDSAVG 118

Query: 108 ---SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
                + K +F DFD +S        +K   L  + K  + ++  H +     +  + YE
Sbjct: 119 YPSEPDIKGLFADFDTTSNRLGNTVADKNKRLAAVLKGVAELDFGHFEDNQIDLFGDAYE 178

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L L     + K        +YDP CG+G  L
Sbjct: 179 FLISNYAANAGKSGGEFFTPQNVSKLIARLALHGQSTVNK--------IYDPACGSGSLL 230

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A                    GQE+   T+ +    M +  +  D       NI  G 
Sbjct: 231 LQAKKQFDAHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNISLGD 279

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           TL    F + K F   +SNPP+  KW    D       N +       L   S     F+
Sbjct: 280 TLLNPQFGSDKPFDAIVSNPPYSVKWIGSDDPTLI---NDDRFASAGVLAPKSKADFAFI 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ IE ++AL  +LFF
Sbjct: 337 LHTLSYL----SAKGRAAIVTFPGIFYRGGA---EQKIRKYLVDNNFIETVIALAPNLFF 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+      Q I+A +L+    N      ++ D+   +I+ ++  +
Sbjct: 390 GTSIAVNILVLSKHKTDMM---TQFIDAGELFKKETN----NNVLTDEHITKIIQLFSEK 442

Query: 460 EN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +    ++ +DY+        + V   +      +   +  L A+I
Sbjct: 443 TDVPHLAKSVDYQVIVDNDYNLSVSSYVEAKDTREVIDINALNAEI 488


>gi|118474825|ref|YP_892158.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414051|gb|ABK82471.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 501

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 110/536 (20%), Positives = 216/536 (40%), Gaps = 56/536 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    +  ++ N IWK  +   G    +++   IL    ++ L    +     ++ +Y  
Sbjct: 6   TLEKTTKKTIENIIWKACDTFRGTMDGSNYKDYILTMLFVKYLSDFYKEKLELLKAEY-- 63

Query: 62  FGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNNLESYIASFSDNAK----AIF 115
            G     +E+ +K   +      T +Y ++   ++N    +   +    ++ +     IF
Sbjct: 64  -GDKLERIEAKLKKEKFRLDESCTFDYFIANKEASNLGEIINKALEKIEEDNRQKLNGIF 122

Query: 116 EDFDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSE 169
            + DF+ST       ++  +L  + ++FS   ++L P  + +  ++ ++YE+LI  F S 
Sbjct: 123 RNIDFNSTAILGDTKQRNIILKNLIEDFSDDRLDLRPSMLENNDIIGDVYEYLIAHFASN 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP +V  L   L+          +P     +YDPTCG+G  L      +  
Sbjct: 183 AGKKGGEFYTPSEVSTLLAKLV----------NPQEGDMIYDPTCGSGSLLIKVSKEIHS 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +GQE   +THA+C   M +  +  D   +    I+    L  +L   
Sbjct: 233 KN--------FRLYGQEKNGQTHALCKMNMFLHEIN-DAVIEWGDTIRNPLHLQNNLL-- 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F   ++NPPF      ++ A          GRF  G+P  S G   F++H+ + L   
Sbjct: 282 KTFDIVVANPPFSLDKWGEEIA-----SGDSFGRFKFGIPPKSKGDYAFVLHMLSSL--- 333

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  G   ++L    LF G +   E +IR+ L+E +L++AI+ LP +LF+ T I   + I
Sbjct: 334 -NSHGTMGVILPHGVLFRGSS---EGKIRQKLIEQNLLDAIIGLPANLFYGTGIPACIMI 389

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
               +T      V  I+A+  +   +N+ +    +ND    +I   Y  R +  K++ + 
Sbjct: 390 FKKNRT---NNDVLFIDASSEFYKDKNQNR----LNDALIAKIAKTYNDRISVDKYAYLA 442

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                      +  P  +    ++  +         +++          +   + +
Sbjct: 443 TIEQIEQNDYNLNIPRYVDTYEEEKPIDIQATKDEIKRIENELNLVQNKMTAYLKE 498


>gi|159904435|ref|YP_001548097.1| N-6 DNA methylase [Methanococcus maripaludis C6]
 gi|159885928|gb|ABX00865.1| N-6 DNA methylase [Methanococcus maripaludis C6]
          Length = 501

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 200/544 (36%), Gaps = 61/544 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +WK A+ L G+   +D+  V+L    L+ +  A E     +  +           E
Sbjct: 6   FEEDLWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYKQLLLEVKDGADPEDPDE 65

Query: 71  SFVKVAGYS-FYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKAIFEDFDFSS 122
               + G S F+   E     +      +++          I   +   K I      + 
Sbjct: 66  YKSNIHGKSVFWVPKESRWEYIQELAKLDSIGIVIDSAMELIEKENSRLKGILPKEYANP 125

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T+ +      L ++      I L        ++  +YE+ + +F S   +   +F TP  
Sbjct: 126 TLDK----RRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPDC 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++                 +YDP CG+GG    +   V +   H      +  
Sbjct: 182 IVKLLVEMIGPYKG-----------RVYDPCCGSGGMFVQSEKFVIE---HSGRINDISI 227

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    + IR +E+D         + G +   DL    +  + L+NPPF 
Sbjct: 228 YGQESNPTTWKLANMNLAIRGIEADI--------KFGDSFHNDLHPDLKADFILANPPFN 279

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                     +         R+  G P   + +  ++ H+ + L    +  G A  VL++
Sbjct: 280 ISDWGGNLLTDD-------KRWKYGTPPTGNANFAWVQHMIHHL----STTGIAGFVLAN 328

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             +      S E EIR  ++   L++AIVALP+ LF+ T I   LW +   K + R G+ 
Sbjct: 329 GSM--SSNTSSEGEIRTNIINAGLVDAIVALPSQLFYNTQIPACLWFVRRGK-DVRNGET 385

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
             I+A ++   I    +K R + ++  ++I  +Y S  NG+          GY  +    
Sbjct: 386 LFIDAREMGEMI---SRKNRSLTEEDIKKIAGVYHSWRNGE----------GYEDVPGFC 432

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
                  ++K G           K        + + ++ ++ ++         + + IK 
Sbjct: 433 KSSDISDIEKQGFILTPGRYVGFKEEEDDGIPFEEKMESLVSELKKTFEEGEILDKQIKE 492

Query: 543 NEAK 546
           N  K
Sbjct: 493 NLKK 496


>gi|15923421|ref|NP_370955.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|156978760|ref|YP_001441019.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255005227|ref|ZP_05143828.2| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|14246199|dbj|BAB56593.1| probable type I site-specific deoxyribonuclease LldI chain
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720895|dbj|BAF77312.1| probable type I site-specific deoxyribonuclease LldI chain
           [Staphylococcus aureus subsp. aureus Mu3]
          Length = 518

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 VNIFYGTSIPTCILVF--KKCCQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|253995602|ref|YP_003047666.1| adenine-specific DNA-methyltransferase [Methylotenera mobilis JLW8]
 gi|253982281|gb|ACT47139.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylotenera mobilis JLW8]
          Length = 513

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 106/539 (19%), Positives = 199/539 (36%), Gaps = 56/539 (10%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   +    L   +WK A+ L  +    ++  ++L    L+ +    E   + +    
Sbjct: 1   MAKEQLTKQEPLEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDTFEQQFAKLAAGV 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
             + GS+ + +    +A   F+   E   S L S   +       +N    I + + + K
Sbjct: 61  GEYAGSDPEDKDEY-LAENVFFVPQEARWSYLQSQAKQPDIGKMVDNAMDAIEAENASLK 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +        L ++      I L    +    V+ +++E+ +  F     
Sbjct: 120 GVLPKVFARDNL----DPASLGQLIDLVGNIALGDAKSRSADVLGHVFEYFLGEFALAEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR VV L   +L   +             ++DP CG+GG    +   +AD  
Sbjct: 176 KQGGQFYTPRSVVELLVEMLEPYNG-----------RVFDPCCGSGGMFVQSEKFIAD-- 222

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            H      +  +GQE    T  +    + IR +E+   +  ++      +   D     +
Sbjct: 223 -HQGKVNDISIYGQESNQTTWRLAKMNLAIRGIEASQVKWNNEG-----SFLNDSHKDLK 276

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +            GR+  G+P   + +  +L H    L    N
Sbjct: 277 ADYIIANPPFNVSDWSGELLRND-------GRWQFGVPPAGNANFAWLQHFIYHL----N 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI-EAIVALPTDLFFRTNIATYLWIL 410
             G+A IVL+   L      SGE +IR+ L+E   + + IV LP  LF  T I   LW +
Sbjct: 326 PTGQAGIVLAKGAL--TSKTSGEGDIRKALIEQGNVIDCIVNLPAKLFLNTQIPAALWFM 383

Query: 411 SNR----KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           S      K   R  ++  I+A +L   I    ++ + ++    +QI D Y +  N   S 
Sbjct: 384 SRNRTNGKFRNRSNEILFIDARNLGHLI---NRRTKELSHTDIKQITDTYHNWRNPNGS- 439

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             D   F    + + R   + ++L       L  D      +    +   +    ++++
Sbjct: 440 YADVSGF-CASVSLERVKELDYVLTPGRYVGLPDDEDDFNFAERFNALKAEYEAQLLEE 497


>gi|256852236|ref|ZP_05557622.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661732|ref|ZP_05862643.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|297205598|ref|ZP_06922994.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus jensenii JV-V16]
 gi|256615282|gb|EEU20473.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260547479|gb|EEX23458.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|297150176|gb|EFH30473.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus jensenii JV-V16]
          Length = 510

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 207/535 (38%), Gaps = 67/535 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   +       + +W   ++L G    +++  V+L    L+ +  + E  R  + +   
Sbjct: 1   MASKSNDL-KFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLKS-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
            +     D ++++  A   F+ + E     +             ++    I   +++ + 
Sbjct: 58  DYPEDAEDSDAYL--ADNIFWVSPEARWDNIQKAAKTPEIGEVIDHAMESIEKDNESLRG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
           I      S  + R      L  +    S I +      +  ++  +YE+ +++F S   +
Sbjct: 116 ILSKNYESPDLDR----SRLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV     ++                T+YDP CG+GG    +   V +   
Sbjct: 172 NGGEFYTPRSVVKTLVEMVEPFKG-----------TVYDPCCGSGGMFVQSEQFVQE--- 217

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      L  +GQE  P T  +    + IR +      D +    Q  T + DL  G  F
Sbjct: 218 HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNNFGAHQADTFTNDLHKGTHF 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y L+NPPF  K    +       K  +  R+  G+P   + +  ++ H+ +KL    N 
Sbjct: 272 DYILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKL----NP 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL++  L        E  IR+ LLE D I+AIVALP  +F+ T I   LW +  
Sbjct: 321 DGKAGFVLANGALSTTL--KEELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDM 378

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS--------RE 460
            K      +RRG+   I+A +L   +    +  R  +D+  ++I D Y +         E
Sbjct: 379 NKNSEDERDRRGETLFIDARELGEMV---DRTHREFSDEDIKKIADTYHAYRGTNEQKYE 435

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   F ++            VL P R   ++++            R  + L + F
Sbjct: 436 DMAGFCKIAKLDEIAKNDY-VLTPGRYVGLVEQEDDGEPYEVKMARLTAELKKQF 489


>gi|167912941|ref|ZP_02500032.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 112]
          Length = 536

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 207/565 (36%), Gaps = 82/565 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTEF--EKQQLGKILWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGPDY 58

Query: 57  ----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-- 104
                        L + G+  D+  F K      +   E                 Y+  
Sbjct: 59  PTQLDSSVSTPLQLWYEGNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAQMAREQSKYLLD 118

Query: 105 -----------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
                       SF+   + +F + + +S            ++CK  + I   L   +  
Sbjct: 119 TLQKGFGYIETESFASTFRGLFSEINLTSDKLGKNYDERNARLCKIINEIAKGLTQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              + ++ D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISSILSAIVTLDGQEPATGQRKHMDSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHRMGPHG-------IGKIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  +    +        +F   ++NPPF  +WE  +         GE  R
Sbjct: 287 SEFEIFHGDTLLNEWDMLRETNPAKIPKFDAVVANPPFSYRWESTEAL-------GEDVR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF    G  E+ IR  LL
Sbjct: 340 FKNYGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFR---GGVEARIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            +  +   +I+D Y  R E  ++SR +   +        + + R +  +   ++  LA +
Sbjct: 446 QLLPEHINKIIDTYQFRKEEARYSRRVGMEEIEKKNDFNLNISRYVSTAEAEEEIDLAAV 505

Query: 499 EADITWRKLSPLHQSFWLDILKPMM 523
            A+     L  L Q   +   +   
Sbjct: 506 HAE-----LVSLDQKIEMATKQHNK 525


>gi|86137460|ref|ZP_01056037.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp.
           MED193]
 gi|85825795|gb|EAQ45993.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp.
           MED193]
          Length = 514

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 125/529 (23%), Positives = 212/529 (40%), Gaps = 65/529 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT        L   IW  A D+ G     DF + +L     R +         A  +   
Sbjct: 1   MTGQ-QQRDELHRQIWAIANDVRGAVDGWDFKQFVLGALFYRFISENFVNYADAGDDNVN 59

Query: 61  AFGGSNIDLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
             G S+ ++        VK  GY  Y  S+   + +   NT ++L + +A+         
Sbjct: 60  YAGMSDSEVPDDFVIEAVKTKGYFIY-PSQLFSNVVSQANTNDSLNTDLAAIFAAIEGSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                 ++   +F DFD +S        +K   L  + K  +G+ L  D     +  + Y
Sbjct: 119 NGYPSEEDISGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLPLTFDDSQRDLFGDAY 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI+ + +   +   +F TP  V  L   + +     + K        ++DP CG+G  
Sbjct: 179 EFLIKNYAANAGKSGGEFFTPPHVSKLIAKIAIHGQTTINK--------IFDPACGSGSL 230

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A   + D G            GQE+   T+ +    M +  +  D       NIQ G
Sbjct: 231 LLQAKYFLKDHGVEDG------YFGQEINHTTYNLARMNMFLHNINYDK-----FNIQLG 279

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL+   F   K F   +SNPP+  KW+   D      +     RF P   L   S    
Sbjct: 280 NTLTDPHFGDDKPFDAIVSNPPYSIKWKGSDDPTLINDE-----RFAPAGVLAPKSKADF 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAA+V      + G A   E +IR++L++N+ +EA++AL  +
Sbjct: 335 AFVLHALSYL----SAKGRAALVCFPGIFYRGGA---EQKIRKYLVDNNYVEAVIALAPN 387

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +L+  K   +   VQ I+AT       ++      ++DD   +++ I+
Sbjct: 388 LFYGTTIAVNILVLAKNK---QNTDVQFIDAT--GEDFFDKKTNNNEMSDDHIAEVMRIF 442

Query: 457 VSRENG-KFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI 502
            S+EN    +  +D          + V   +       KT +  L A++
Sbjct: 443 DSKENEAHVAETVDQVKIIAQDYNLSVSAYVEPKDTRVKTNITELNAEL 491


>gi|323442787|gb|EGB00413.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O46]
          Length = 518

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDL-------ESFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D           +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFIHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDTQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKGKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|253730780|ref|ZP_04864945.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725493|gb|EES94222.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 518

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 218/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  + D Q  +I+ 
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLTDAQVERIIS 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKHKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|329730414|gb|EGG66804.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDL-------ESFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D           +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|163801600|ref|ZP_02195498.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174517|gb|EDP59319.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 499

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 115/514 (22%), Positives = 206/514 (40%), Gaps = 45/514 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       E+      + 
Sbjct: 5   NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFEEAMEQVGDEELAK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D+   +++     +         +G      +    I   +     IF D  +++   R
Sbjct: 65  GDMFHRIQIPANCHWKDVFAETKDIGQA--LKDSFRGIELENPQLHGIFGDASWTNK-ER 121

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L
Sbjct: 122 LSD-ELLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDP CGTGG L + ++HV + G     P +L   GQE
Sbjct: 181 MVNIL----------DPQANESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T A+    + +   E D        ++    L  D      F   ++NPPF  K  
Sbjct: 228 KNLTTEAIARMNLFLHGQE-DFEIVRGDTLRDPKFLQNDQLEN--FDCVIANPPFSLKEW 284

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                      +   GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 285 GH-----DYWTSDPYGRASFGLAPKTNGDFAWVQHMFASL----NDEGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E +IR  LL+ + I A++ + ++LF+ T I   + +L   + EE +  V ++N
Sbjct: 336 RGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKARPEEHKDHVLIVN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIY--------VSRENGKFSRMLDYRTFGYRRI 478
           A +++T  R     +  +++ Q  +I DIY         + +    +R + +        
Sbjct: 393 AEEIFTKGRA----QNTLSEPQADEIYDIYQKMRTKGPKADDIEGVARWVPHSEIEENDF 448

Query: 479 KVLRPLRMSFILDKTGLARLEADITW-RKLSPLH 511
            +     +   L++  +   EA   + +KL  L 
Sbjct: 449 NLNIARYVQKPLEEETITVEEALKDFQQKLVALE 482


>gi|190149559|ref|YP_001968084.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914690|gb|ACE60942.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 517

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 120/527 (22%), Positives = 206/527 (39%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   IW+ A ++ G     DF + +L     R +            E       S
Sbjct: 5   QERAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYATWS 64

Query: 66  NIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           + D       E  +K  GY  Y  S+   + + + +   NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 124 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 236 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 284

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 445

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 446 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 492


>gi|156978013|ref|YP_001448919.1| type I restriction enzyme M protein [Vibrio harveyi ATCC BAA-1116]
 gi|156529607|gb|ABU74692.1| hypothetical protein VIBHAR_06810 [Vibrio harveyi ATCC BAA-1116]
          Length = 526

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 198/529 (37%), Gaps = 56/529 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            +   +W   +   G    + +   IL    L+ +    +     +  ++         +
Sbjct: 31  QVNKAVWSACDTFRGTVDPSIYKDFILTMLFLKYISDVRQDKVEELTTQFGDNKEMVEAM 90

Query: 70  ---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              +SF   AG +F++  E        +     L +   +     K +F+D  F++    
Sbjct: 91  LASQSFKIPAGSTFWDLYEARFEAGNGSRIDQALHAIEEANGTKLKGVFQDISFNTDKLG 150

Query: 127 LEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            EK    +L  + ++F    + L P  V    V+ N YE+LI+ F +   + A +F TP 
Sbjct: 151 DEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPP 210

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  L + +L           P    ++ DP CG+G  L      V       K      
Sbjct: 211 EVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQKNFGGSK---QYA 257

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCL 296
             GQE    T ++    M +   +       +  I+ G T+              F    
Sbjct: 258 LFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDSNGGLLHFDVVT 310

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +DA     +N   GRF  G+P  + G   F+ H+   L+      GR 
Sbjct: 311 ANPPFSLDKWGHEDA-----ENDHFGRFRRGVPPKTKGDYAFISHMIETLKPET---GRM 362

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF   +   E +IR+ L+E +L++A++ LP  LFF T I   + I   +K  
Sbjct: 363 GVVVPHGVLFRASS---EGKIRKQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKKKK-- 417

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
                V  I+A+  + S +N    + ++  +   +I+  Y S +N  K++ +        
Sbjct: 418 -DTNDVMFIDASREFKSGKN----QNVLTAENIDKIVKTYRSGDNVDKYAYVATLDEIRE 472

Query: 476 RRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
               +  P  +    ++  +     R E      +L+ L       + +
Sbjct: 473 NDYNLNIPRYVDTFEEEAEIDLMAVRSERLALQTELADLEAEMKGYLEE 521


>gi|260665337|ref|ZP_05866185.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
 gi|260560841|gb|EEX26817.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
          Length = 510

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 113/535 (21%), Positives = 205/535 (38%), Gaps = 67/535 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   +       + +W   ++L G    +++  V+L    L+ +  + E  R  + +   
Sbjct: 1   MASKSNDL-KFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLKS-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
            +     D ++++  A   F+ + E   + +             ++    I   +++ + 
Sbjct: 58  DYPEDAEDSDAYL--ADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
           I      S  + R      L  +    S I +      +  ++  +YE+ +++F S   +
Sbjct: 116 ILSKNYESPDLDR----SRLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV     ++                T+YDP CG+GG    +   V +   
Sbjct: 172 NGGEFYTPRSVVKTLVEMVEPFKG-----------TVYDPCCGSGGMFVQSEQFVQE--- 217

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      L  +GQE  P T  +    + IR +      D +    Q  T + DL  G  F
Sbjct: 218 HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNNFGAHQADTFTNDLHKGTHF 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y L+NPPF  K    +       K  +  R+  G+P   + +  ++ H+ +KL    N 
Sbjct: 272 DYILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKL----NP 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL++  L        E  IR+ LLE D I+AIVALP  +F+ T I   LW +  
Sbjct: 321 DGKAGFVLANGALSTTL--KEELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDM 378

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------- 459
            K      +RRG+   I+A +L   +    +  R  +++  ++I D Y +          
Sbjct: 379 NKNSEDERDRRGETLFIDARELGEMV---DRTHREFSNEDIKKIADTYHAYRGTNKQKYE 435

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   F ++            VL P R   + ++            R    L + F
Sbjct: 436 DVAGFCKIAKLDEIAKNDY-VLTPGRYVGLAEQEDDGEPYEVKMARLTGELKKQF 489


>gi|118497300|ref|YP_898350.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella tularensis subsp.
           novicida U112]
 gi|194323604|ref|ZP_03057381.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. novicida FTE]
 gi|118423206|gb|ABK89596.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella novicida U112]
 gi|194322459|gb|EDX19940.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. novicida FTE]
          Length = 495

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 110/531 (20%), Positives = 201/531 (37%), Gaps = 50/531 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---L 60
              +   +   +W   +   G      +   IL    ++ L    +  +  + ++Y    
Sbjct: 2   QKTTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSQRYNGDE 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                 +  E F      +F                   L+            IF   DF
Sbjct: 62  KMIERALSREKFRLDDSCTFDYLYANRDKENLGEIINAALDRIEEDNPQKLTGIFRGVDF 121

Query: 121 SSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
           +         ++  +L  + K+F+   ++L P  +  + V+ + YE+LI  F S+  +  
Sbjct: 122 NDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLDGNDVIGDSYEYLIANFASDSGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  V  L   L+   D             +YDPTCG+G  L  A   +       
Sbjct: 182 GEFFTPSQVSSLLAMLVQAKD----------GDEIYDPTCGSGSLLIKAAKEIGSNN--- 228

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +GQE    TH++C   M +  +  D    L   I+    L  D    K+F  
Sbjct: 229 -----FAIYGQERNSTTHSLCRMNMFLHDIN-DANIQLGDTIRNPRILENDKL--KKFDV 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF        D       +    RF  G+P  S G   F+ H+   L    N  G
Sbjct: 281 VVANPPFSLDKWGADDVT-----SDVYSRFEFGIPPKSKGDYAFIQHMLASL----NESG 331

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I   + +   +K
Sbjct: 332 RMAVVVPHGVLFRGAA---EGKIRQQIIDNNLLDAVIGLPSNLFFGTSIPACIMVFKKQK 388

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
                  V  I+A++ +   +N    +  + DD  ++I D Y SRE+  K+S +      
Sbjct: 389 ---DSNDVLFIDASNEFEKGKN----QNKLTDDNIKKIFDTYKSRESLEKYSHVASLEEI 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +  P  +    ++  +       T  +L    ++    + + + +
Sbjct: 442 KENDYNLNIPRYVDTFEEEEPVDIEATKQTIAELEAKRETLKTKMAEYLKE 492


>gi|237653814|ref|YP_002890128.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|237625061|gb|ACR01751.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 508

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 114/489 (23%), Positives = 202/489 (41%), Gaps = 50/489 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF--GG 64
           +   L +++W  A  L G     D+ + I P    +R+    +        +        
Sbjct: 6   TQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYEVALAESDGDLSYA 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              +   F   AG  + +  +   +   +   +  + +  ++  D    IF D  +++  
Sbjct: 66  KFAENHRFQIPAGAHWNDVRQTPRNVGAA--IQQAMRAIESANPDLLDGIFGDAPWTNR- 122

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL    L   + ++FS   L    VP+  + N YE+LI++F  +    A +F T R VV
Sbjct: 123 ERLPDETLK-NLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVV 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L  +G
Sbjct: 182 HLMTQLL----------APQADESIYDPTCGTGGMLISALDEVKRSGGEYRT---LKLYG 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPP 300
           QE    T ++    + +  +E          I +G TL++         +RF   L+NPP
Sbjct: 229 QERNLITSSIARMNLFLHGVED-------FQIIRGDTLAEPRHIEGDRLRRFDVILANPP 281

Query: 301 FGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           +  K W+++    +K       GR   G P        F  H+   L    +  GR AI+
Sbjct: 282 YSIKQWDREAWTQDKW------GRNFLGTPPQGRADYAFQQHILGSL----SDRGRCAIL 331

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
                LF       E  +R  ++E D +EA+V L  +LF+ + + + + I + RK  ER+
Sbjct: 332 WPHGVLFRNE----EQAMRSKMIEQDWVEAVVGLGPNLFYNSPMESCILICNRRKPAERQ 387

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRI 478
           G+V  I+A    T  R +      +  + +++IL  + +  +   F+R+           
Sbjct: 388 GRVLFIDAVGEVTRERAQS----FLKPEHQQRILGAFKAFADAPGFARVATLAELHKNAG 443

Query: 479 KVLRPLRMS 487
            +  PL + 
Sbjct: 444 NLSIPLYVK 452


>gi|168179782|ref|ZP_02614446.1| type I restriction-modification system, M subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669249|gb|EDT81225.1| type I restriction-modification system, M subunit [Clostridium
           botulinum NCTC 2916]
          Length = 511

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 113/549 (20%), Positives = 216/549 (39%), Gaps = 70/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKY 59
           M+      A+L   +W  A DL G+ +  +F   IL     R L   +E     +  E  
Sbjct: 1   MSVSREQQANLHARLWDIANDLRGNMEANEFKNYILGLIFYRYLSEKVEGRAENLLKEDN 60

Query: 60  LAFGGSNIDL-------ESFVKVAGYSF------------YNTSEYSLSTLGSTNTRNNL 100
           +++  +  D        E  +   GY                T  + +  L  +      
Sbjct: 61  ISYREAWEDDEYRQALQEELLAQIGYFIEPKYLFSSLMKEIETGNFDVEMLQGSINDITE 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +      D+   +F+D D +ST    +   ++ L+ K+  N S I+   D     V+ +
Sbjct: 121 STLGHKSQDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  +   L+      L        +++YDP CG+G
Sbjct: 181 AYEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSG 232

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L                  +   +GQEL   T+ +    ML+  +  +       +I+
Sbjct: 233 SLLLRVSKEA----------NVRKFYGQELTSTTYNLARMNMLLHDVSYE-----RFDIR 277

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              TL        +F   ++NPP+  KW  DK  ++ E +    G+  P     S     
Sbjct: 278 NDDTLENPQHIDMKFDAVVANPPYSAKWSADKKFLDDE-RFSAYGKLAP----KSKADYA 332

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTD 396
           F+ H+  +L    N GG  A+VL    LF G A   E  IR++L+E  + ++ ++ LP +
Sbjct: 333 FVQHMIYQL----NEGGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDGVIGLPAN 385

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + +   +K+ E    V  I+A+  +   +N    + ++ D    +I+  Y
Sbjct: 386 IFFGTSIPTVILVF--KKSRENSDNVMFIDASREFEKGKN----QNVLKDKDVEKIISTY 439

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLH 511
           + RE   K++              +  P  +              +++ +   +++  + 
Sbjct: 440 IKRETVDKYAYKATLDEIKENDYNLNIPRYVDTFEEEEPIDIDEVKIKIESIDKEIEEID 499

Query: 512 QSFWLDILK 520
           +   + + +
Sbjct: 500 KELEIFLKE 508


>gi|310780626|ref|YP_003968957.1| type I restriction-modification system, M subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309749949|gb|ADO84609.1| type I restriction-modification system, M subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 513

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 112/527 (21%), Positives = 204/527 (38%), Gaps = 66/527 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------- 59
              L   +W  A +L G+    +F   IL F   + L   +E       E          
Sbjct: 5   KQELEKRLWAIANELRGNMGADEFRDYILGFIFFKFLSEKMENFAKKELEVEGISFADAV 64

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYN------TSEYSLSTLGSTNTRNNLESYIASF 107
                        ++   +     + F+N      + E  +  L          +     
Sbjct: 65  KDPEIMEDLKEEAMESLGYFIEPRHLFHNIAARARSREMIIEDLIKAMKEVEESALGHES 124

Query: 108 SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             +   +FED D +ST       +K  L+ ++ K+   I    +     V+ + YE+LI 
Sbjct: 125 EQDFTGLFEDVDLTSTKLGRTVEQKNRLISEVIKHLDEINFKFEDTEMDVLGDAYEYLIG 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S   + A +F TP+ V  +   L+    + +        +T+YDPTCG+G  L    
Sbjct: 185 EFASGAGKKAGEFYTPQQVSKILAKLVTLGKEKI--------KTVYDPTCGSGSLLLRV- 235

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     +   +   +GQEL   T+ +    M++       ++     I+QG TL  
Sbjct: 236 ---------SRESDVSFFYGQELNTTTYNLARMNMILHD-----KKFSDFEIEQGDTLED 281

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                KRF   ++NPPF  KW  ++  +  E +    G+  P     +     F+ H+ +
Sbjct: 282 PHHLDKRFEAVVANPPFSAKWSANQTFLSDE-RFSAYGKLAP----KTKADFAFVQHMIH 336

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
           +L    +  G  A VL    LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I
Sbjct: 337 QL----DENGTMATVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFYGTSI 389

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
            T + +   +K  E    V  I+A++ +   +N    +  + D+   +I+D Y +R E  
Sbjct: 390 PTCVLVF--KKCRENPENVLFIDASNYFEKAKN----QNYLRDEDVERIIDTYRNRTEIE 443

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           KFS +            +  P  +    ++  +   E     + L  
Sbjct: 444 KFSHVATMAEIKENDYNLNIPRYVDTFEEEEPVDLAEVAKAIKALDK 490


>gi|194436633|ref|ZP_03068734.1| type I restriction-modification system, M subunit [Escherichia coli
           101-1]
 gi|194424665|gb|EDX40651.1| type I restriction-modification system, M subunit [Escherichia coli
           101-1]
          Length = 528

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 112/526 (21%), Positives = 204/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               +  ++   +W   +   G      +   IL    L+ +    +    + + +Y   
Sbjct: 2   NDKITQETINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDSYKAQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEALNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  +++D  R I+  Y + +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSEDNIRTIVKTYRNGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  L  + A+    K  
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAE 488


>gi|88195628|ref|YP_500434.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|258415889|ref|ZP_05682160.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|258420718|ref|ZP_05683657.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|258438383|ref|ZP_05689667.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|258443827|ref|ZP_05692166.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|258448234|ref|ZP_05696361.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|258454237|ref|ZP_05702208.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282893296|ref|ZP_06301530.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|282928537|ref|ZP_06336136.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|295406113|ref|ZP_06815921.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297244963|ref|ZP_06928840.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|300911561|ref|ZP_07129006.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|87203186|gb|ABD30996.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|257839482|gb|EEV63955.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|257843322|gb|EEV67732.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|257848427|gb|EEV72418.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|257851233|gb|EEV75176.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|257858473|gb|EEV81349.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|257863689|gb|EEV86446.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282589746|gb|EFB94831.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|282764614|gb|EFC04740.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|294969110|gb|EFG45131.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297178043|gb|EFH37291.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|300887193|gb|EFK82393.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 579

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 218/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     +  
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFE 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +    K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKATIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|307256315|ref|ZP_07538098.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865141|gb|EFM97041.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 535

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 121/527 (22%), Positives = 211/527 (40%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E  KY A+ 
Sbjct: 25  QERAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 84

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             + ++    E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 85  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 143

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 144 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 203

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 204 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 255

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 256 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 304

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 305 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 359

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 360 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 413 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 465

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 466 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 512


>gi|302528797|ref|ZP_07281139.1| type I restriction-modification system, M subunit [Streptomyces sp.
           AA4]
 gi|302437692|gb|EFL09508.1| type I restriction-modification system, M subunit [Streptomyces sp.
           AA4]
          Length = 541

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 181/478 (37%), Gaps = 62/478 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G      +  VIL    L+ +  A +  R A+R    A G   
Sbjct: 14  TMKELKDTLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAYDERREAIRADLTAEGYDA 73

Query: 67  IDLESFV----KVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFE 116
             +   +    +  GY  +     +          G           I    D A  +  
Sbjct: 74  EQIADLIDDPEEYQGYGVFVVPPTAQWDYLAQYAKGKPAEGTEPAKNIGQLIDEAMDLVM 133

Query: 117 DFD--FSSTIARLEKA-----GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             +     T+ RL          L ++   F+        +     +M  +YE+ +  F 
Sbjct: 134 KTNPALQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFA 193

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  VV +   +L                 +YDP CG+GG        +
Sbjct: 194 RSEGKRGGEFFTPPSVVRVIVEVLEP-----------SSGRVYDPCCGSGGMFVQTEKFI 242

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +   H+  P  +   GQE   ET  +    + I  +E     +     + G T ++D  
Sbjct: 243 YE---HNGDPKDVSIFGQESLEETWRMAKMNLAIHGIE-----NKGLGARWGDTFARDQH 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +  Y ++NPPF  K+           +N E  R+  G+P  ++ +  ++ H+  KL 
Sbjct: 295 ADLQMDYVMANPPFNIKYWS---------RNTEDPRWKFGVPPATNANYAWIQHILYKL- 344

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A +V+++  + +   G  E  IR  ++E DL+  +VALPT LF  T I   +
Sbjct: 345 ---APGGSAGVVMANGSMSSNSNG--EGAIRAQIVEADLVSCMVALPTQLFRSTGIPVCV 399

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           W  +  K        +R G+V  I+A +L   +    +  R ++++   +I D Y + 
Sbjct: 400 WFFAKDKRAGKHGAVDRSGQVLFIDARELGYMV---DRAERTLSNEDIAKIADTYHAW 454


>gi|254436009|ref|ZP_05049516.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
 gi|207089120|gb|EDZ66392.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
          Length = 541

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 120/551 (21%), Positives = 206/551 (37%), Gaps = 77/551 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT      + L   +W  A+DL G     DF   +L F  LR L    E   +  +   Y
Sbjct: 8   MTRD--QLSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 65

Query: 60  -------------LAFGGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRNNLES 102
                        + +  +  D+ +F K       Y  +    +S     +      L  
Sbjct: 66  PKLADDDRRAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQ 125

Query: 103 YIA---------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-- 151
            +A         SF+   + +F + +  S       A    K+C   + I          
Sbjct: 126 TLAGGFKHIENESFASTFQGLFSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTG 185

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F +   + A +F TP+ V  + + ++              +  + D
Sbjct: 186 SDILGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVLD 245

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  N +   G       I + +GQE    T+ +    ML+  +     +D
Sbjct: 246 FACGSGSLLLNVRNQMGPRG-------IGMIYGQEKNITTYNLARMNMLLHGM-----KD 293

Query: 272 LSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D             +    ++NPPF  +WE D+         GE  R
Sbjct: 294 TEFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDFR 346

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L    +  G  AIVL    LF G A   E+ IR  LL
Sbjct: 347 FESHGLAPKSAADFAFLLHGLHFL----SDEGTMAIVLPHGVLFRGGA---EARIRTKLL 399

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP++LFF T I   + +L   K  +    V  INA++ +      GK++ 
Sbjct: 400 KDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKPD---DVLFINASEHFEK----GKRQN 452

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            +      +I+D Y  R E  +++R +           +       ++        ++ D
Sbjct: 453 ALRPVDIDKIVDTYQYRKEEERYARRVSREEIEKNDDNLNI---SRYVSTAKPEPEVDLD 509

Query: 502 ITWRKLSPLHQ 512
              +KL+ + Q
Sbjct: 510 DVHKKLTAIEQ 520


>gi|77163968|ref|YP_342493.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|76882282|gb|ABA56963.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
          Length = 534

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 120/551 (21%), Positives = 206/551 (37%), Gaps = 77/551 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT      + L   +W  A+DL G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTRD--QLSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRNNLES 102
                        + +  +  D+ +F K       Y  +    +S     +      L  
Sbjct: 59  PKLADDDRRAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQ 118

Query: 103 YIA---------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-- 151
            +A         SF+   + +F + +  S       A    K+C   + I          
Sbjct: 119 TLAGGFKHIENESFASTFQGLFSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTG 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F +   + A +F TP+ V  + + ++              +  + D
Sbjct: 179 SDILGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  N +   G       I + +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRNQMGPRG-------IGMIYGQEKNITTYNLARMNMLLHGM-----KD 286

Query: 272 LSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D             +    ++NPPF  +WE D+         GE  R
Sbjct: 287 TEFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDFR 339

Query: 324 F-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L    +  G  AIVL    LF G A   E+ IR  LL
Sbjct: 340 FESHGLAPKSAADFAFLLHGLHFL----SDEGTMAIVLPHGVLFRGGA---EARIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP++LFF T I   + +L   K  +    V  INA++ +      GK++ 
Sbjct: 393 KDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKPD---DVLFINASEHFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            +      +I+D Y  R E  +++R +           +       ++        ++ D
Sbjct: 446 ALRPVDIDKIVDTYQYRKEEERYARRVSREEIEKNDDNLNI---SRYVSTAKPEPEVDLD 502

Query: 502 ITWRKLSPLHQ 512
              +KL+ + Q
Sbjct: 503 DVHKKLTAIEQ 513


>gi|260776279|ref|ZP_05885174.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607502|gb|EEX33767.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
          Length = 519

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 113/522 (21%), Positives = 208/522 (39%), Gaps = 68/522 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGSNIDLESF- 72
           +W  A  L G+    DF   IL     + L   L      +  E  + F  +  D E   
Sbjct: 13  LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGITFVAAADDKELIN 72

Query: 73  ------VKVAGYSFYN------------TSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
                 V+  GY                  E+ +  L  T       +  A  +D+   +
Sbjct: 73  DLREECVENLGYFIAPKQLFSSLAGRGKKQEFIVDELDRTLADIEQSTTAADSADDFNGL 132

Query: 115 FEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FE+ D +S+        +  L+ ++  +   I+ H +     ++ + YE+LI +F S   
Sbjct: 133 FEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASGAG 192

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   L+            G ++++YDPTCG+G  L      V    
Sbjct: 193 KKAGEFYTPQQVSKILAKLV---------SLDGNVKSVYDPTCGSGSLLLRVAREVGSHN 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L   GQE  P T+ +    ML+  +  D       +I+   TL   +   +R
Sbjct: 244 --------LEFCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLEQR 290

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF   W  ++  +  E +  + G+  P     S     F++H+ ++L    N
Sbjct: 291 FDAVVANPPFSANWSANELHLNSE-RFADYGKLAP----KSKADFAFVLHMIHQL----N 341

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF T+I T + + 
Sbjct: 342 ETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFFGTSIPTCILVF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              +  +    V  I+A++ +      GK +  + ++   +I++ Y  RE+  KF+ +  
Sbjct: 399 KKNRKND--DNVLFIDASNHFEK----GKAQNFMRNEDVERIVEAYRKRESVEKFAHVAK 452

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                     +  P    ++        ++ D   + L+ L 
Sbjct: 453 LTEVEENDYNLNIP---RYVDTFEEEEPVDLDAVAQDLASLE 491


>gi|21282121|ref|NP_645209.1| type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300911069|ref|ZP_07128518.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21203557|dbj|BAB94257.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300887248|gb|EFK82444.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 518

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  + D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQEDYVLFIDASNDFEKGKN----QNHLTDAQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|300865423|ref|ZP_07110226.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
 gi|300336582|emb|CBN55376.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
          Length = 540

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 215/577 (37%), Gaps = 93/577 (16%)

Query: 1   MTE----FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           MT       G    L   +W  A+ L G     +F    L F   + L        + V 
Sbjct: 1   MTNGLNGQNGHKKKLETQLWNIADSLRGKMNADEFRDYCLGFIFYKYLSERQYIYANGVL 60

Query: 57  EK----YLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTRNNLESYI- 104
            +    +L    S+ + + +++            F   SE   S           +  I 
Sbjct: 61  AEDGIDFLEIDESSEEGQEYLEAIKEESIAELGYFLKPSELFSSLAKRALGNQADKDEIS 120

Query: 105 ----------------------------ASFSDNAKAIFEDFDFSSTIAR---LEKAGLL 133
                                           ++   +FED D +ST        K  L+
Sbjct: 121 DEELEKSSIFILGDLTDVLNNIERSTMGKESEEDFDHLFEDLDLNSTKLGRTPKAKNALI 180

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            KI  +   I+         V+ + YE+LI +F S   + A +F TP+ V  +   ++  
Sbjct: 181 AKILVHLDKIDFRLGDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTT 240

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
             + L        +++YDPTCG+G  L      V   G           +GQE+   T+ 
Sbjct: 241 GKERL--------KSVYDPTCGSGSLLLRVAREVESVGD---------FYGQEMNRTTYN 283

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +    M++  +        + +++Q  TL      G RF   ++NPPF  +W  +K   E
Sbjct: 284 LARMNMILHGVHY-----RNFDLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANK-LFE 337

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            + +  + G+  P    +S     F+ H+ + L    +  G  A+VL    LF G A   
Sbjct: 338 SDDRFSQYGKLAP----VSKADFAFVQHMLHHL----DENGIMAVVLPHGVLFRGGA--- 386

Query: 374 ESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           E  IR++L+ E + ++A++ LP ++F+ T+I T + +L  +K  E    V  I+A+  + 
Sbjct: 387 EGHIRQYLIKERNWLDAVIGLPANIFYGTSIPTCILVL--KKCRESPEDVLFIDASAYFE 444

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFI 489
              N    + ++      +I+  Y  R E  K+S              + + R +     
Sbjct: 445 KATN----QNLLRAQDVDKIISTYRQRIEEDKYSYRAPLAEIEENNFNLNIPRYVDTFEE 500

Query: 490 LDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQ 524
            ++  LA + A +    + ++ + Q+      +  + 
Sbjct: 501 EEEIDLAAVAAKLRQCDQDMAGIDQTIQAFCDELGID 537


>gi|49485299|ref|YP_042520.1| putative restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49243742|emb|CAG42167.1| putative restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 518

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQETWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  + D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQEDYVLFIDASNDFEKGKN----QNHLTDAQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|302332146|gb|ADL22339.1| Type I restriction-modification system methyltransferase subunit,
           HsdM_1 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 518

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L                  +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVGKETK----------VYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWIADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDAFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|158315560|ref|YP_001508068.1| N-6 DNA methylase [Frankia sp. EAN1pec]
 gi|158110965|gb|ABW13162.1| N-6 DNA methylase [Frankia sp. EAN1pec]
          Length = 564

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/508 (20%), Positives = 175/508 (34%), Gaps = 86/508 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L   +WK A+ L G      +   +L    L+ +  A    R  +R+  LA G   
Sbjct: 14  TMAQLRETLWKTADKLRGSMDAAQYKDFVLVLIFLKYVSDAFAERREQIRQDVLADGIDE 73

Query: 67  IDLESFV----KVAGYS-FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              E F+    + AG   F+         + +      +   + +  D       +   +
Sbjct: 74  SRAEEFLDDVDEYAGQGVFWVPGRARWEHIAANAKSAGIGELLNAAMDAVMKT--NPALT 131

Query: 122 STIARLEKA-----GLLYKICKNFSGIELHPDTVPD------------------------ 152
             + R+          L ++               +                        
Sbjct: 132 GVLPRIFNGEGVDQHRLGELVDLLGDARFTGHRATERPPSTPTGEDGALFGESAAGVPTE 191

Query: 153 -------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   V+  +YE+ + RF     +   +F TP  VV L   +L   +          
Sbjct: 192 AATRPARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVLEPYEG--------- 242

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP CG+GG    A   V            +  +GQE    T  +    + I  + 
Sbjct: 243 --RVYDPCCGSGGMFVQAEKFVVAHRGLTHSGD-IAVYGQESNERTWRLAKMNLAIHGIT 299

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D         +   T   D     R  + L+NPPF               +  +  R+ 
Sbjct: 300 GDLSA------RWDDTFRNDRHPDLRADFILANPPFNMSDWA---------RTVDDQRWR 344

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+  KL       G A +V+++  + + +  SGE EIR  L+E D
Sbjct: 345 YGTPPTGNANFAWLQHIIAKL----GSRGTAGVVMANGSMSSKQ--SGEGEIRAALVEAD 398

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEG 438
           L+  ++ALP  LF  T I   LW  +  K +       ERRG+   I+A D+ T I    
Sbjct: 399 LVACMIALPPQLFRTTQIPACLWFFAKDKGQLGARWLAERRGETLFIDARDMGTMI---D 455

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSR 466
           +  RI+ D    +I D Y +    K +R
Sbjct: 456 RTERILTDGDLEKITDTYRAWRGAKSAR 483


>gi|303249554|ref|ZP_07335761.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302651628|gb|EFL81777.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 516

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 120/527 (22%), Positives = 206/527 (39%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   IW+ A ++ G     DF + +L     R +            E       S
Sbjct: 5   QERAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYATWS 64

Query: 66  NIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           + D       E  +K  GY  Y  S+   + + + +   NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 124 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 236 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 284

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 285 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 393 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 445

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 446 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 492


>gi|82750144|ref|YP_415885.1| type I site-specific deoxyribonuclease [Staphylococcus aureus
           RF122]
 gi|82751391|ref|YP_417132.1| type I restriction-modification system M subunit [Staphylococcus
           aureus RF122]
 gi|82655675|emb|CAI80072.1| type I site-specific deoxyribonuclease [Staphylococcus aureus
           RF122]
 gi|82656922|emb|CAI81357.1| type I restriction-modification system M subunit [Staphylococcus
           aureus RF122]
          Length = 518

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 220/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDSKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF    G+ E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFR---GASEGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIN 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +E   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|160887311|ref|ZP_02068314.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483]
 gi|260171380|ref|ZP_05757792.1| Type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
 gi|315919693|ref|ZP_07915933.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
 gi|156107722|gb|EDO09467.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483]
 gi|313693568|gb|EFS30403.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
          Length = 514

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 213/545 (39%), Gaps = 69/545 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLAF 62
              L + +W  A  L G+   +DF    L F   + L   +E   + + E+        +
Sbjct: 6   QQKLRSQLWTVANTLRGNMSASDFMYFTLGFIFYKYLSEKIELYANEILEEDHITFKEVW 65

Query: 63  GGSNIDLESFVKVA-----GYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------- 107
            G + +L+  VK       GY       YS      +   N L S   S           
Sbjct: 66  NGKDEELKQDVKEECIQNLGYFIEPEYLYSTIIELISKKENILPSLERSLKKIEDSTIGQ 125

Query: 108 --SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEH 161
              D+   +F D D +S        +K  L+  +    +GI+       D  ++ + YE+
Sbjct: 126 DSEDDFGGLFSDLDLASPKLGKTADDKNKLISDVLIALNGIDFGLQEAGDIDILGDAYEY 185

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +I +F +   + A +F TP++V  +   +++     L          ++DPTCG+G  L 
Sbjct: 186 MISQFAAGAGKKAGEFYTPQEVSQILAEIVITGKVRLKD--------VFDPTCGSGSLLL 237

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        GQE  P T  +C   ML+  ++ +       +IQ G T
Sbjct: 238 RTA----------KSGKADSIFGQEKNPTTFNLCRMNMLLHGVKYN-----DFDIQNGDT 282

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L  D F  ++F   ++NPPF   W     A +K + +    + G  L   S     F++H
Sbjct: 283 LEADAFGDRQFDAVVANPPFSADW----TAADKFNNDDRFSKAGV-LAPRSKADYAFILH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFR 400
           +   L    N GG  A V     LF G A   E +IR++L+E  + I+AI+ LP ++F+ 
Sbjct: 338 MIYHL----NDGGTMACVAPHGVLFRGAA---EGKIRQFLIEKKNYIDAIIGLPANIFYG 390

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459
           T+I T + ++   + E+    +  I+A+  +  +    K +  +  +  ++I+D Y  R 
Sbjct: 391 TSIPTCILVIKKCRKED--DNILFIDASKEFEKV----KTQNKLRPEHIQKIIDTYRERK 444

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           E  K+S     +        +  P  +    ++  +         ++L          I 
Sbjct: 445 EIEKYSHCATLQEVKENDYNLNIPRYVDTFEEEEEIDIHAVMTEIKELEAKRAELDKQID 504

Query: 520 KPMMQ 524
             + +
Sbjct: 505 VYLKE 509


>gi|15924798|ref|NP_372332.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927382|ref|NP_374915.1| hypothetical protein SA1626 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283480|ref|NP_646568.1| hypothetical protein MW1751 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486627|ref|YP_043848.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268280|ref|YP_001247223.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394345|ref|YP_001317020.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156980124|ref|YP_001442383.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255006594|ref|ZP_05145195.2| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|258446038|ref|ZP_05694214.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|269203441|ref|YP_003282710.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|13701601|dbj|BAB42894.1| SA1626 [Staphylococcus aureus subsp. aureus N315]
 gi|14247580|dbj|BAB57970.1| type I restriction enzyme EcoR124II M protein homolog
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204921|dbj|BAB95616.1| hsdM [Staphylococcus aureus subsp. aureus MW2]
 gi|49245070|emb|CAG43536.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741349|gb|ABQ49647.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946797|gb|ABR52733.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156722259|dbj|BAF78676.1| type I restriction enzyme EcoR124II M protein homolog
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257855280|gb|EEV78219.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|262075731|gb|ACY11704.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|285817487|gb|ADC37974.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus 04-02981]
 gi|312830179|emb|CBX35021.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130553|gb|EFT86539.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329727301|gb|EGG63757.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 518

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 218/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     +  
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFE 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +    K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKATIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|319744117|gb|EFV96490.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus agalactiae ATCC 13813]
          Length = 501

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 107/524 (20%), Positives = 204/524 (38%), Gaps = 61/524 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T +       +W  A+ L G     D+ KVI+    L+ +  +       ++  YL   
Sbjct: 5   NTSANIGFEKELWDAADSLRGHISAADYRKVIIGLIFLKYVSDSF-----TIKYNYLLKE 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFE 116
               + +    V+   F+   +     +             ++    I S + +   +  
Sbjct: 60  DEGFEEDRDEYVSENIFFVPQKSRWDYIAENAHSPEIGIILDDAMREIESENKSLVGVLP 119

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
               +  + +     +L ++   F+ I +        ++   YE+ + +F +   +   +
Sbjct: 120 KVYATPDLDK----RVLGEVVDIFTNINMFAHGNEKDLLGRTYEYCLEQFAAYEGKNGGE 175

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V     +L   +             +YDP CG+GG    +   V +   H   
Sbjct: 176 FYTPTSIVKTIVEILKPFNG-----------RVYDPACGSGGMFVQSETFVEN---HSGN 221

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L  +GQE   +T  +    M IR +E       +    Q  T   DL    +  Y +
Sbjct: 222 INNLSIYGQEANADTWKMAKINMAIRGIE------PNFGPHQADTFIDDLHPTLKADYIM 275

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K       V+         R+  G P  S+ +  ++ H+ + L       G+ 
Sbjct: 276 ANPPFNLKKWGADKLVDDV-------RWKYGTPPDSNANYAWIQHMIHHL----APNGKI 324

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +VL++  L + ++G  E +IR+ ++E+DL+E IVALP  LF+   I   LW +S  K  
Sbjct: 325 GLVLANGSLSSTQSG--EGDIRKAIIEDDLVEGIVALPAQLFYSVTIPACLWFISKNK-- 380

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDY 470
           +++GK   I+A +L   +    +K R   DD  ++I   + + + G       F  +++ 
Sbjct: 381 KQKGKTVFIDARNLGHMV---DRKHRDFTDDDIQKIAKTFEAFQEGTLENEKGFCAVVET 437

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +    +   +L P R   I DK   +    +   R  + L + F
Sbjct: 438 KAIAEQDY-ILTPGRYIGIEDKEEDSEPFEEKMERLTTELSELF 480


>gi|110639723|ref|YP_679933.1| type I restriction-modification system, M subunit [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110282404|gb|ABG60590.1| type I restriction-modification system, M subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 528

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/565 (20%), Positives = 212/565 (37%), Gaps = 83/565 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M+E       L   +W  A  L G     +F   IL F   + L   +E           
Sbjct: 1   MSEDQKRI--LEQQLWNIANTLRGKMNADEFRDYILGFIFYKYLSEKMEIFANDILKQDK 58

Query: 50  --------------PTRSAVREKYLAFGGSNIDLESFV----------KVAGYSFYN-TS 84
                             A+RE+ L   G  +  E                G +F    +
Sbjct: 59  ISFREITPKLKQGKEYLEAIREEALEKLGYFLKPEELFSEVAKRGRGSNDEGENFDEAKT 118

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFS 141
            + L  L        L +      ++   +FED D +ST        +  ++ K+  +  
Sbjct: 119 NFILEDLQKILINIQLSTMGTDSEEDFDNLFEDMDLNSTKLGKTPDARNAIIAKVLTHLD 178

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I+   + +   V+ + YE+LI +F S   + A +F TP+ V  +   ++      L   
Sbjct: 179 KIDFKLEDLESDVLGDSYEYLIGQFASGAGKKAGEFYTPQQVSKILAKIVTTEKHKL--- 235

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                +++YDPTCG+G  L      V D             +GQE+   T+ +    M++
Sbjct: 236 -----KSVYDPTCGSGSLLLRVAREVKDVAK---------FYGQEMNRTTYNLARMNMIL 281

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +          +I+Q  TL      G++F   ++NPPF  +W  +   +  + +  + 
Sbjct: 282 HGVHYRK-----FDIKQEDTLEHPQHMGQQFEAIVANPPFSAQWSANPLHLSDD-RFSQY 335

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G+  P     S     F+ H+ + L       G  A+VL    LF G A   E  IR++L
Sbjct: 336 GKLAPA----SKADYAFVQHMVHHL----AENGIMALVLPHGVLFRGGA---EQHIRKYL 384

Query: 382 LE-NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E  + ++A++ LP ++F+ T+I T + ++  +K  E    +  I+A+  +  +    K 
Sbjct: 385 IEQKNYLDAVIGLPGNIFYGTSIPTCILVI--KKCREMPDNILFIDASKEFEKV----KT 438

Query: 441 RRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + I+ +    +I+D Y SR E  K+S     +        +  P  +    ++  +    
Sbjct: 439 QNILREKHIDKIVDTYRSRKEIEKYSHCASLKEIAENDFNLNIPRYVDTFEEEEEIDIQA 498

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQ 524
                + L          I   M +
Sbjct: 499 VMAEIKNLEAKRTDLDKQIDVYMKE 523


>gi|254190415|ref|ZP_04896923.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938091|gb|EDO93761.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 543

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/519 (21%), Positives = 203/519 (39%), Gaps = 44/519 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF--GG 64
           S   L N++W  A  L G     D+ + I P    +R+    +    A            
Sbjct: 44  SQQELENYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALANSNGDLSYA 103

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              +   F   AG  + +  +   +   +   +  + +   +  D    IF D  +++  
Sbjct: 104 QFAENHRFQIPAGAHWNDVRQTPKNVGAA--IQKAMRAIETANPDLLDGIFGDAPWTNR- 160

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL    L   + ++FS   L    VP+  + N YE+LI++F  +    A +F T R VV
Sbjct: 161 ERLPDETLK-NLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVV 219

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++    L  +G
Sbjct: 220 HLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGGEYRT---LKLYG 266

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T ++    + +  +E     ++ +          +    ++F   L+NPP+  K
Sbjct: 267 QERNLITSSIARMNLFLHGVED---FEIIRGDTLADPKHIEGDRLRQFDVILANPPYSIK 323

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +        + + GR   G P        F  H+   L       GR A++     
Sbjct: 324 QWNREG-----WSSDKWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRCAVLWPHGV 374

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT  RRGKV  
Sbjct: 375 LFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKTAARRGKVIF 430

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRP 483
           I+A       R +      +  + ++ IL+ Y    +   F+++            +  P
Sbjct: 431 IDAVSEVARERAQS----FLKPEHQQHILNAYKMFADAPGFAKVATLAEIAANAGNLSIP 486

Query: 484 LRMSF----ILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           L +      I   +    +    +W +     ++FW  +
Sbjct: 487 LYVKRIAAAIATDSNGDAVSLRSSWERWQNEGRTFWQQM 525


>gi|118580277|ref|YP_901527.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
 gi|118502987|gb|ABK99469.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
          Length = 540

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 180/471 (38%), Gaps = 63/471 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAFGGS 65
            L   +W  A+ L  +    ++  ++L    ++ +    +   S +RE++      +   
Sbjct: 4   ELIKTLWATADKLRANMDAAEYKHIVLGLIFVKYISDTFQTRSSELRERFGNPDDEYYIQ 63

Query: 66  NIDLESFVKVAGYS--------FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
           + D E+ V              F+         + +   +       ++  + I + +  
Sbjct: 64  DADDETLVCELEDRDYYREVNTFWVPEAARWENIRAQAKQPDIGKRIDDALTLIEAENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
            K I +       +      G L ++    S I           ++  +YE+ + +F S 
Sbjct: 124 LKGILDKRYARVQLP----DGKLGELVDMVSTIGFGVTGESARDILGQVYEYFLGQFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPASIVRTLVAILAPHHGQ-----------VYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   +   T  ++    
Sbjct: 229 HGGRIG---DVSIYGQESNPTTWRLAAMNLAIRGI------DFNLGKEPADTFVRNQHPD 279

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            R  + L+NPPF    W       +         R+  G P   + +  +L H+   L+ 
Sbjct: 280 LRADFVLANPPFNVSDWWHPSLEGD--------PRWEYGTPPQGNANYAWLQHMLYHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + + +    E EIRR L+E D +E +VA+P  LFF T I   LW
Sbjct: 332 ----TGRAGIVLANGSMSSSQNS--EGEIRRALVEADKVEVMVAMPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            L+ +K+  R+G+V  I+A  L T I    + +   +D+  ++I D   + 
Sbjct: 386 FLAKQKSV-RQGEVLFIDARKLGTMI---SRVQIEFSDEDIQRIADTVHAW 432


>gi|237742577|ref|ZP_04573058.1| type I restriction-modification system [Fusobacterium sp. 4_1_13]
 gi|229430225|gb|EEO40437.1| type I restriction-modification system [Fusobacterium sp. 4_1_13]
          Length = 520

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 114/553 (20%), Positives = 212/553 (38%), Gaps = 69/553 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---------LEPTR 52
           ++     A L   IW  A DL G     DF + +L     R +             E   
Sbjct: 3   SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEFEAGN 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-- 110
           S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N  
Sbjct: 63  SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIE 121

Query: 111 -----------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVM 155
                       K +F+D D ++       A     +    +G+ ++      +      
Sbjct: 122 SSANGTESENDLKGLFDDIDVNNNKLGGTVAKRNENLVNLINGVGDMKLGDYQENTIDAF 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   ++ TP++V  L T + L     + K        +YDP CG
Sbjct: 182 GDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDPACG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      +      +         GQE+   T+ +C   M +  ++ D       +
Sbjct: 234 SGSLLLKFAKILGKNNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FD 282

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL++      + F   +SNPP+  KWE D   +          RF P   L   S
Sbjct: 283 IAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKS 337

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ 
Sbjct: 338 KADLAFIMHSLSWL----ASNGTAAIVCFPEVMYRSGA---EQKIRKYLIDNNYIDCIIQ 390

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K    + +     I
Sbjct: 391 LPDNLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNK----MTEKHIDDI 443

Query: 453 LDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           ++ +  REN ++ S +++Y         +     +        +  +E +    ++    
Sbjct: 444 VEKFTKRENIEYISNLIEYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIERIVVRE 503

Query: 512 QSFWLDILKPMMQ 524
           +    +I K + +
Sbjct: 504 EELRKEIDKIIAE 516


>gi|15839317|ref|NP_300005.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9107964|gb|AAF85513.1|AE004079_4 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 525

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 116/536 (21%), Positives = 207/536 (38%), Gaps = 73/536 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----- 57
                 A L   IW+ A DL G     DF   +L     R +   L    +A        
Sbjct: 4   NKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRADDP 63

Query: 58  --KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF------- 107
              Y     ++ +      V    FY   SE  +         +NL   ++         
Sbjct: 64  DFDYAQLSDADAESGRAETVKEKGFYILPSELFVRVRAGAKCDDNLNETLSKVFANIERS 123

Query: 108 ------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPD-----TVPDR 153
                   + K +F+D D +S+       ++   L K+ +    + L             
Sbjct: 124 AIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGGFTDNTID 183

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L++ + S   +   +F TP++V  L T + +     + K        +YDP 
Sbjct: 184 LFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK--------VYDPA 235

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L + +  +               +GQE+   T+ +C   M +  +  +      
Sbjct: 236 CGSGSLLLNFVKVLGHDQVRRG------FYGQEINLTTYNLCRINMFLHNVNYEK----- 284

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL+       + F   +SNPP+  KW+ D +A+          RF P   L  
Sbjct: 285 FHIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLIND-----PRFAPPGILAP 339

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++A+
Sbjct: 340 KSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAV 392

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   K   R      ++A+ L          +  +    ++
Sbjct: 393 IQLPADLFFGTTIATCIIVLKKSK---RDNATLFMDASSLCVR----SGTKNKLTPAHQK 445

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +ILD + +R++   F+R++D          I V   +  +   +   +  L  DI 
Sbjct: 446 KILDGFTARQDIEHFARLVDNSDIAANGYNIAVSSYIAHADTRESIDIKALNRDIA 501


>gi|237743940|ref|ZP_04574421.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 7_1]
 gi|229432971|gb|EEO43183.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 7_1]
          Length = 520

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/553 (20%), Positives = 211/553 (38%), Gaps = 69/553 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++     A L   IW  A DL G     DF + +L     R +   L         E   
Sbjct: 3   SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGN 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-- 110
           S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N  
Sbjct: 63  SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFINVRKKADKDENLNVTLDTIFKNIE 121

Query: 111 -----------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVM 155
                       K +F+D D +S             +    +G+ ++      +      
Sbjct: 122 NSANGTESESDLKGLFDDIDVNSNKLGGTVVKRNENLVNLINGVGDMKLGDYQENTIDAF 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG
Sbjct: 182 GDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPACG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      +      +         GQE+   T+ +C   M +  ++ D       +
Sbjct: 234 SGSLLLKFAKILGKNNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FD 282

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL++      + F   +SNPP+  KWE D   +          RF P   L   S
Sbjct: 283 IAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLAPKS 337

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ 
Sbjct: 338 KADLAFIMHSLSWL----APNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCIIQ 390

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T+IAT + +L   K +    K+  I+ +  +  + N  K    + +     I
Sbjct: 391 LPDNLFYGTSIATCIMVLKKSKID---NKILFIDGSKEFVKVTNSNK----MTEKHIDDI 443

Query: 453 LDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           ++ +  REN ++ S +++Y         +     +        +   E +   +++    
Sbjct: 444 VEKFTKRENIEYISNLIEYEKIVEENYNLSVSTYVEKEDTSEKIDIFELNKEIQRIVARE 503

Query: 512 QSFWLDILKPMMQ 524
           +    +I K + +
Sbjct: 504 EELRKEIDKIIAE 516


>gi|315453997|ref|YP_004074267.1| type I restriction-modification system [Helicobacter felis ATCC
           49179]
 gi|315133049|emb|CBY83677.1| type I restriction-modification system [Helicobacter felis ATCC
           49179]
          Length = 557

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 121/530 (22%), Positives = 196/530 (36%), Gaps = 68/530 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----- 57
           +       L   IW  A+ L G     DF + +L     R L   L    +A        
Sbjct: 41  DAQAKRNELFKTIWGIADKLRGAVDGWDFKQFVLGIIFYRYLSENLTAYINANERALNPD 100

Query: 58  -KYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
             Y A   +     +  +      F   SE   + L   +T  NL + +           
Sbjct: 101 FDYSALQDAQAKQAKDLLLEEKGFFIPPSELFSNVLKRADTDGNLNTKLNKIFQNIEDSS 160

Query: 108 -----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 +N + +F D D  S        EK   +  + K    +++         V  + 
Sbjct: 161 LEGEAQENFRGLFADLDMDSNKLGNGVKEKNEKIRSLLKAVGAMKIEDYQESGIDVFGDA 220

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+  + S+  +   +F TP++V  L   L+L     + K        +YDP CG+G 
Sbjct: 221 YEFLMGMYASDAGKSGGEFFTPQEVSELLAKLVLHGQKDINK--------VYDPCCGSGS 272

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +                GQE+   T+ +C A M +  +E +       +I  
Sbjct: 273 LLLKFAKILGKENIKQG------FFGQEINLTTYNLCRANMFLHNIEYNQ-----FDIAH 321

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL        + F   +SNPP+  KW  D D +          RF P   L       
Sbjct: 322 GDTLLNPQLEDFEPFDAIVSNPPYSTKWVGDDDPLLIND-----PRFAPAGVLAPCKYAD 376

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F MH+ + L +     G  AIV     L+ G A   E++IR+ L++ + ++ ++AL  
Sbjct: 377 LAFTMHMLSWLSVK----GTCAIVQFPGVLYRGGA---EAKIRQHLIDRNFVDGVIALAP 429

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           DLFF TNI T + IL   K ++R   V  ++A+  +         +  +      +IL +
Sbjct: 430 DLFFGTNIPTCVLILRKNKPDDR---VLFVDASAEFVR----QDTKNKLAPSNIAKILKV 482

Query: 456 YVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI 502
           Y SRE    FS ++           + V R L      +   +A L A I
Sbjct: 483 YESREEIAHFSILVGAEQIRANGYNLSVSRYLDPKEEGEALDIAHLNAQI 532


>gi|71900226|ref|ZP_00682364.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
 gi|71729999|gb|EAO32092.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
          Length = 527

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 119/538 (22%), Positives = 208/538 (38%), Gaps = 75/538 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----- 57
                 A L   IW+ A DL G     DF   +L     R +   L    +A        
Sbjct: 4   NKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRTGNE 63

Query: 58  ----KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF----- 107
                Y     +  +      V    FY   SE  +         +NL   ++       
Sbjct: 64  KDDFDYAQLSDARAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIE 123

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------- 152
                     + K +F+D D +S+      A    K+ K    I   P T  +       
Sbjct: 124 RSAIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGGFTENT 183

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L++ + S   +   +F TP++V  L T + +     + K        +YD
Sbjct: 184 IDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK--------VYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L + +  +               +GQE+   T+ +C   M +  +  +    
Sbjct: 236 PACGSGSLLLNFVKVLGHDKVRQG------FYGQEINLTTYNLCRINMFLHNVNYEK--- 286

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL+       + F   +SNPP+  KW+ D +A+          RF P   L
Sbjct: 287 --FHIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLIND-----PRFAPAGIL 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++
Sbjct: 340 APKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVD 392

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF T IAT + +L   K +        ++A+ L+         +  ++   
Sbjct: 393 AVIQLPADLFFGTTIATCIIVLKKSKGDNA---TLFMDASSLFVR----SGTKNKLSTAH 445

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +++ILD + +R+N   F+R++D          I V   +  +   +   +  L  DI 
Sbjct: 446 QKKILDGFTARQNIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNRDIA 503


>gi|254804703|ref|YP_003082924.1| putative type I restriction-modification system DNA methylase
           [Neisseria meningitidis alpha14]
 gi|254668245|emb|CBA05075.1| putative type I restriction-modification system DNA methylase
           [Neisseria meningitidis alpha14]
          Length = 514

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/534 (22%), Positives = 206/534 (38%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y  S+   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PSQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+   L  G+ F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDGRPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +  GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SSRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDASSFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAKDTCEAVDIKQLNAEIS 492


>gi|324993827|gb|EGC25746.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK405]
 gi|324994852|gb|EGC26765.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK678]
 gi|327474702|gb|EGF20107.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK408]
          Length = 512

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 102/527 (19%), Positives = 208/527 (39%), Gaps = 60/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
              G   + +         F+         + S           +     I   + + + 
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSKIGTVLDKAMREIEEDNSSLEN 126

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L ++   F+ I+++       ++   YE+ I +F +   + 
Sbjct: 127 VLPQIYASPDLDK----RVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKR 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L                 +YDP CG+GG    +   + +   H
Sbjct: 183 GGEFYTPTSIVKTIVEILKPYRG-----------RVYDPACGSGGMFVQSAKFIEN---H 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L   GQE   +T  +    M+IR +++D          Q ++   DL    + +
Sbjct: 229 SGNINNLSVFGQESNADTWKMAKMNMVIRGIDAD------FGEHQANSFFNDLHPTLKAN 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF           +         R+  G P  S+ +  ++ H+ + ++      
Sbjct: 283 YIMANPPFNISNWGADKLQDD-------IRWKYGTPPNSNANYAWIQHMIHHMD---PSN 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L + +  SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  
Sbjct: 333 GKVGLVLANGSLSSTQ--SGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKN 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRM 467
           K  +++GK   I+A ++   I    +K R  +++  +++ D + + +NG       F   
Sbjct: 391 K--KQKGKTLFIDARNMGEMI---DRKHRDFSNEDIKKLADTFEAFQNGNLEDVKGFCAS 445

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           ++      +   +L P R   I +K        +   R  + L + F
Sbjct: 446 VETAEIAKQDF-ILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELF 491


>gi|165975742|ref|YP_001651335.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|307262879|ref|ZP_07544503.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165875843|gb|ABY68891.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|306871784|gb|EFN03504.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 537

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 120/527 (22%), Positives = 206/527 (39%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   IW+ A ++ G     DF + +L     R +            E       S
Sbjct: 25  QERAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYATWS 84

Query: 66  NIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           + D       E  +K  GY  Y  S+   + + + +   NL + +               
Sbjct: 85  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYD 143

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 144 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 203

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 204 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 255

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 256 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 304

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 305 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 359

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 360 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 413 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 465

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 466 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 512


>gi|294794794|ref|ZP_06759929.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
 gi|294454156|gb|EFG22530.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
          Length = 510

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/533 (20%), Positives = 199/533 (37%), Gaps = 63/533 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MAAKNNTDIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFERRYEELIKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +         F+   E   ST+ S           +N    I   +   K 
Sbjct: 59  ---GDGFENDRDAYAEENIFFVPEEARWSTIASAAHTPEIGLVIDNAMRAIEKENTTLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F S    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++      +    Q  T   DL    + 
Sbjct: 222 NRGT---ISVYGQESNADTWKMAKMNMAIRGIDA------NFGPYQADTFFNDLHKTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +       K  +  R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGQE-------KLKDDVRWKYGLPPAGNANYAWIQHMIHHL----GP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +    SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQS--SGEGEIRRRIIEDDLIEGIVALPTQLFYSVTIPVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENG----- 462
            K  +++GK   I+A  +   +  + +       +         ++  +   ++G     
Sbjct: 380 CK--KQKGKTLFIDARKMGYMVDRKHRDFTEGIQEDGSLGDIDLLVKTFEEFQSGMLVEK 437

Query: 463 -KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             FS +        +   +L P R   I ++ G      +   R  S L   F
Sbjct: 438 KGFSAIATIEDIAKQDY-LLTPGRYVGIEEQEGDGEPFEEKMTRLTSELSDMF 489


>gi|302380078|ref|ZP_07268553.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3]
 gi|302312098|gb|EFK94104.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3]
          Length = 480

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 154/489 (31%), Positives = 237/489 (48%), Gaps = 48/489 (9%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT A NH+ +          +   GQE+  +++AV +A MLI+  ++       +N + 
Sbjct: 1   MLTTAYNHLHNLNP----KADIRLFGQEIMGQSYAVGLAEMLIKGQDA-------RNFKH 49

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKIS 332
             T  +D F   +  + L NPPFG  W         + AV + HK G   R+  GLP   
Sbjct: 50  ADTFKEDCFEDTKMRFVLENPPFGMSWGGKDAKAGQEQAVLENHKRGNDSRWPAGLPSSG 109

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D  +LF+    +K++   +  GRAAI+ + SPLFNG   SGES+IRRWLLENDLIEAI+A
Sbjct: 110 DAQLLFMQSAIDKMD---DEHGRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIA 166

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQ 451
           +PTDLF+ T IATY+WILS  K +ER GK+QLI+AT+++ ++R   G KR+    + R+ 
Sbjct: 167 MPTDLFYNTGIATYVWILSKNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKT 226

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD---------- 501
           I  +Y        S++ D   F YR   V++PL+ S+ ++   +  LE            
Sbjct: 227 ITKLYSDFVENDKSKIYDNEEFIYREYTVMQPLQRSYAINDERIENLETSGKLNSFYDKT 286

Query: 502 -----ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK------- 549
                +  ++ S        + LK   +    Y      +KE+I   +  ++        
Sbjct: 287 KHDEILEKQETSEKLTKTETNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEPVVN 346

Query: 550 -----VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604
                +  +K+     I+     D  AD  TD  G  I D +  + E V   E+I+DY  
Sbjct: 347 DLLSELSLNKTVFNNIIDGLSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIEDYMK 406

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           REV PH+PDA               + G EI F R+FY+YQ  R  +++  E   +E  +
Sbjct: 407 REVLPHIPDAKSFFEEDVTLKNPKIKTGAEIPFTRYFYKYQAPRPSEELAQEFLELEDIV 466

Query: 665 ATLLEEMAT 673
              ++E+  
Sbjct: 467 NQKVKELFG 475


>gi|257883803|ref|ZP_05663456.1| DNA-methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819641|gb|EEV46789.1| DNA-methyltransferase [Enterococcus faecium 1,231,501]
          Length = 538

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/564 (18%), Positives = 221/564 (39%), Gaps = 61/564 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGGS 65
           + + + + +W  A  L G    +++   ILPF   R L    +   +    E+Y      
Sbjct: 3   NTSEITSKLWAMANKLRGTMDASEYKNYILPFMFYRYLSENQDDYLKKNGLEEYYEVTDP 62

Query: 66  NIDLESFVKVA-GYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAI----- 114
               +   +++ G  +    EY+   L           ++ +    SF+ NAK       
Sbjct: 63  EEKEDYLQEISRGIGYAIAPEYTWEQLVKKIENHQIKASDFQDLFDSFNANAKRNPLAED 122

Query: 115 -----FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                F D +   T       E+A  L  I    +      D     ++ ++YE+LI +F
Sbjct: 123 DFANVFSDINLGDTRLGSNTNERAKALNDIVLMINDFVF-KDEAGHDILGDVYEYLIGQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP +V  +   ++    +    +       +YDPT G+G  L      
Sbjct: 182 AANAGKKGGEFYTPHEVSQVLAKIVTSDANVEDNQ-----FRVYDPTMGSGSLLLTVKKE 236

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +        +      +GQEL   T+ +    +++  +        + N+++  TL  D 
Sbjct: 237 LPAGDKSGSVD----FYGQELNTTTYNLARMNLMMHGINYQ-----NMNLRRADTLDADW 287

Query: 287 FTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              +        +F   ++NPP+  KW+      EK+ +       G G+   S     F
Sbjct: 288 PFAEKEGMQIPLKFDAVVANPPYSAKWDIKDVDREKDTRFK-----GYGVAPASKADYAF 342

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H    L    +  G  AIVL    LF G A   E +IR+ +++N+L++A++ +P +LF
Sbjct: 343 VLHGLYHL----DKSGTMAIVLPHGVLFRGAA---EGKIRKNIIDNNLLDAVIGMPANLF 395

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T + +   R+  + +  +  I+A+  +   +N    +  ++DD   +I++ Y  
Sbjct: 396 YGTSIPTTVLVFKGREARKTKD-ILFIDASSEFVKGKN----QNKLSDDNINKIIETYEK 450

Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE+  K++ +            +  P  +    ++  +   +      ++         +
Sbjct: 451 REDVEKYAHVATLEEIIENDYNLNIPRYVDTFEEEEVIPLSQVAQELSEVKAEIDRSTAN 510

Query: 518 ILKPMMQQIYPYGWAESFVKESIK 541
           + + M +       A+  +++ +K
Sbjct: 511 LYETMKELQGLTPEAQEELEKFMK 534


>gi|56476900|ref|YP_158489.1| Type I site-specific deoxyribonuclease, methylase subunit
           [Aromatoleum aromaticum EbN1]
 gi|56312943|emb|CAI07588.1| Type I site-specific deoxyribonuclease,methylase subunit
           [Aromatoleum aromaticum EbN1]
          Length = 543

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/548 (19%), Positives = 204/548 (37%), Gaps = 70/548 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MTE       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTE--QDQKQLGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGADY 58

Query: 60  ------------------LAFGGSNIDLESFVKVAGYSFYNTSE-----------YSLST 90
                             + +  +  D+  F K      +   E               +
Sbjct: 59  PDVAPGVMEQTDSTTPLQIWYEENADDVAEFEKQMRRKVHYVIEPDYLWGSIVHLAKTES 118

Query: 91  LGSTNTRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LH 146
               +T      YI   SF  N + +F + + +S     +      K+C   S +   + 
Sbjct: 119 SKLLDTLQKGFKYIEERSFQSNFQGLFSEINLASDKLGRKYEDRNDKLCSIISELARGMS 178

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +     + + YE+LI +F +   + A +F TP+ +  + +A++        +     +
Sbjct: 179 LFSTDTDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKEGPRKKL 238

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-- 264
             ++D  CG+G  L +  + +   G           +GQE    T+ +    ML+  +  
Sbjct: 239 ENVFDFACGSGSLLLNVRHRMKKAGGTIG-----KIYGQEYNVTTYNLARMNMLLHGVKD 293

Query: 265 -ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELG 322
            E +     +      S    +     +F   ++NPPF  +W+  D  + +   KN    
Sbjct: 294 TEFEIYHGDTLANTWDSLRETNPAKKPQFDAVVANPPFSYRWDLGDAMSEDMRFKN---- 349

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               G+   S     FL+H  + L+      G  AI+L    LF G A   E  IRR LL
Sbjct: 350 ---HGVAPKSAADFAFLLHGLHYLK----DDGVMAIILPHGVLFRGGA---EERIRRKLL 399

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            +  I+ +V LP +LF+ T I   + +L   K  +    V  INA + +      GK++ 
Sbjct: 400 IDGHIDTVVGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHFEK----GKRQN 452

Query: 443 IINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL 498
            ++D+  ++I+D Y  R  +  +++R +           + + R +  +   ++  L  +
Sbjct: 453 QLSDEHIQRIIDTYQQRPSDIPRYARRVGMEEIEKNDFNLNISRYVSTAVAEEEVDLKAV 512

Query: 499 EADITWRK 506
              +   +
Sbjct: 513 HQQLVDIE 520


>gi|70725065|ref|YP_251979.1| type I restriction-modification system DNA methylase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68445789|dbj|BAE03373.1| type I restriction-modification system DNA methylase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 504

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 195/519 (37%), Gaps = 56/519 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
               +W+ A+ L G     ++  V L    L+ +  + E     +++   A      +  
Sbjct: 6   FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYKELKQDPYADEEDQDEYL 65

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            E+   V   + +     +          +     I   +++ K +         + +  
Sbjct: 66  AENIFWVPKEARWQYINDNAKKPEIGQLIDKAMIAIEKENESLKGVLPKEYARPALDK-- 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L  
Sbjct: 124 --EKLGDIIDLFTFKLGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV 181

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++                 +YDP CG+GG    +   V     H      +  +GQE  
Sbjct: 182 EMIEPYKG-----------RIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQESN 227

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF       
Sbjct: 228 PTTWKLAKMNLAIRGIDND------LGERNADTFHNDLHKGLKADYILANPPFNASDWGQ 281

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++  +   
Sbjct: 282 ERLLDD-------YRWQFGVPPKGNANYAWIEHMISKL----APNGTAGFVLANGSMST- 329

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQL 424
            +G  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ER+ ++  
Sbjct: 330 -SGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERKNEILF 388

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGKFSRMLDYRTFGY 475
           I+A ++   +    +  +  +D+  +++   Y S          +   F ++++      
Sbjct: 389 IDAREIGHMV---SRTLKEFSDEDIQKVAQTYHSWRGTNDKYYEDIAGFCKVVNLEEVKN 445

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +L P R   + D             R  S L + F
Sbjct: 446 NEY-ILTPGRYVGLADVEEDEEPFEQKMKRITSELSEQF 483


>gi|296110699|ref|YP_003621080.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154]
 gi|295832230|gb|ADG40111.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154]
          Length = 514

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 205/548 (37%), Gaps = 68/548 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51
           MTE T  + +L   +W +A  L G    +++   +L     R L             E  
Sbjct: 1   MTENT--SKTLEQALWNSANVLRGKMDASEYKNYLLGLIFYRFLSHKTMAAVIDATGEIG 58

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
                 K       +  +       G+       +        N +  +     +     
Sbjct: 59  DPIAIYKQYWQDQRDDIIAELYTANGFIIQPDELFDSLVTRIQNHQFQVSDLKTALFNLE 118

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                    D+ + +F D D  S       + ++         I+   D     V+ + Y
Sbjct: 119 QSVKGHKSEDDFEGLFSDIDLDSNRLGKNPSQVMNDTITALKDIDFDSDR---DVLGDAY 175

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F     + A +F TPR V  +   ++    +    +    IR++YDP  G+G  
Sbjct: 176 EYLISEFAMSAGKKAGEFYTPRTVSEIIARIVAKGHE----DGDNQIRSVYDPAMGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      V            +  HGQEL   T  +    +++  +  +       +++ G
Sbjct: 232 LLTVAGQVT-------GNKTIAYHGQELNTTTFNLARMNLMLHGVSFEDI-----HVRNG 279

Query: 280 STLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D    +  +F   + NPP+   W  D+  +  E +  + G+  P     S     
Sbjct: 280 DTLDNDWPAQEPYQFDAVVMNPPYSAHWNNDESRL-SEPRFRDYGKLAP----KSKADYA 334

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G A   E +IR+ L+++++I+A++ LP ++
Sbjct: 335 FLLHGLYHLKPS----GTMGIVLPHGVLFRGAA---EGKIRQQLIDSNMIDAVIGLPANI 387

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + IL   K  +    V  I+A + +T  +N    + +++++   +I+  Y 
Sbjct: 388 FYSTSIPTVILILKKNKATK---DVLFIDAINQFTKGKN----QNVLSEENIDKIVSTYD 440

Query: 458 SREN-GKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQ 512
            R++  K++ +  +D        + + R +      +   L  +   +     ++  L +
Sbjct: 441 KRQDVEKYAHVALIDEIKENDYNLNIPRYVDTFEEEEPIDLEAVRQQLKQDDIEIQKLEK 500

Query: 513 SFWLDILK 520
                + +
Sbjct: 501 EIEETLKE 508


>gi|154252793|ref|YP_001413617.1| type I restriction-modification system, M subunit [Parvibaculum
           lavamentivorans DS-1]
 gi|154156743|gb|ABS63960.1| type I restriction-modification system, M subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 505

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 108/523 (20%), Positives = 195/523 (37%), Gaps = 52/523 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   +    W   +   G      +   IL    L+ +           R+++ 
Sbjct: 1   MTDQ-LTQQQVNQTAWAACDTFRGVVDAGQYKDYILVMLFLKYISDLWNDHVEVYRKQFG 59

Query: 61  AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                         F+   G SFY+                 LE    +     + +F +
Sbjct: 60  EDEARIRRRLERERFILPEGTSFYDLHAQRTEANIGELINIALEKIEDANRAKLEGVFRN 119

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            DF+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  +
Sbjct: 120 IDFNSEANLGRVKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  +  L   L           +P    T+ DP CG+G  L  A   V     
Sbjct: 180 KAGEFYTPSAISRLLAKLA----------APKPGDTICDPACGSGSLLIRAAEEVGSEN- 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     +GQE+   T A+    M +   ++     +       S    +     +F
Sbjct: 229 -------FALYGQEVNGATWALARMNMFLHAKDA---ARIEWCDTLNSPALVEGDHLMKF 278

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF       ++A        +  RF  G+P  S G   F+ H+    E+    
Sbjct: 279 DVVVANPPFSLDKWGAENA-----DTDQFKRFWRGIPPKSKGDYGFITHMI---EIAKRQ 330

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + +   
Sbjct: 331 SGRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDR 387

Query: 413 RK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
            +      E R  V  I+A+  +T     GK + ++++    ++L+ Y SR E  K+S  
Sbjct: 388 SREQGGANEDRRDVLFIDASKEFTP----GKTQNVMDEAHIARVLEAYASRAETPKYSHR 443

Query: 468 LDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                       + + R +      ++  +A L+  I   +  
Sbjct: 444 ASPEEIAENDFNLNIPRYVDTFEPEEEIDVAALQKQINTIEAE 486


>gi|254372672|ref|ZP_04988161.1| hypothetical protein FTCG_00237 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570399|gb|EDN36053.1| hypothetical protein FTCG_00237 [Francisella novicida GA99-3549]
          Length = 495

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 108/531 (20%), Positives = 199/531 (37%), Gaps = 50/531 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---L 60
              +   +   +W   +   G      +   IL    ++ L    +  +  + ++Y    
Sbjct: 2   QKTTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSQRYNGDE 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                 +  E F      +F                   L+            IF   DF
Sbjct: 62  KMIERALSREKFRLDDSCTFDYLYANRDKENLGEIINAALDRIEEDNPQKLTGIFRGVDF 121

Query: 121 SSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
           +         ++  +L  + K+F+   ++L P  +  + V+ + YE+LI  F S+  +  
Sbjct: 122 NDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLEGNDVIGDSYEYLIANFASDSGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  V  L   L+                 +YDPTCG+G  L  A   +       
Sbjct: 182 GEFFTPSQVSSLLAMLV----------QAKEGDEIYDPTCGSGSLLIKAAKEIGSNN--- 228

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +GQE    TH++C   M +  +  D    L   I+    L  D    K+F  
Sbjct: 229 -----FAIYGQERNSTTHSLCRMNMFLHDIN-DANIQLGDTIRNPRILENDKL--KKFDV 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF        D       +    RF  G+P  S G   F+ H+   L    N  G
Sbjct: 281 VVANPPFSLDKWGADDLT-----SDVYSRFEFGIPPKSKGDYAFIQHMLASL----NESG 331

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I   + +   +K
Sbjct: 332 RMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPACIMVFKKQK 388

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
                  V  I+A++ +   +N    +  + DD  ++I D Y SRE+  K+S +      
Sbjct: 389 ---DSNDVLFIDASNEFEKGKN----QNKLTDDNIKKIFDTYKSRESLEKYSHVASLEEI 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +  P  +    ++  +          +L    ++    + + + +
Sbjct: 442 KENDYNLNIPRYVDTFEEEESVDIEVTKQAIAELEAKRETLKTKMAEYLKE 492


>gi|124265198|ref|YP_001019202.1| type I restriction-modification system, M subunit [Methylibium
           petroleiphilum PM1]
 gi|124257973|gb|ABM92967.1| type I restriction-modification system, M subunit [Methylibium
           petroleiphilum PM1]
          Length = 528

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 180/470 (38%), Gaps = 61/470 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-------REKYLAF 62
            L   +W  A+ L  +    ++  ++L    L+ +    +  R+ +        ++Y   
Sbjct: 4   DLKRTLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFQARRTELTARFADPADEYHLD 63

Query: 63  GGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
           G +  D+ + ++   Y      F+         + S   +       ++  S I + +  
Sbjct: 64  GATPADIAAELEDRDYYREANVFWVPEAARWEAIRSAAKQPDIGKRIDDALSLIEAENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
            K I +        A+L    L  ++    S I           V+  +YE+ +  F S 
Sbjct: 124 LKGILDK---RFARAQLPDGKLG-ELVDLVSTIGFGESAATARDVLGQVYEYFLGMFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TPR +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPRSIVKTLVAVLAPH-----------HGKVYDPCCGSGGMFVQSEEFILS 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +   GQE  P T  +    + IR +      D +   +   T +K+ F  
Sbjct: 229 HGGKLG---DVAIFGQEANPTTWRLAAMNLAIRGI------DFNLGREPADTFTKNQFPD 279

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R  + L+NPPF                     R+  G P   + +  +L H+ + L+  
Sbjct: 280 LRADFILANPPFNISDWWHASLTGD-------ARWHYGDPPQGNANYAWLQHMLHHLKP- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRA IVL++  + + +  + E +IR   +E D++E ++ALP  LFF T I   LW 
Sbjct: 332 ---GGRAGIVLANGSMSSSQ--NNEGQIRAATVEADVVEVMIALPGQLFFNTQIPACLWF 386

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           L   K  +RRG+V  I+A  L T I    + +  + D+   +I     + 
Sbjct: 387 LVKDK-RQRRGEVLFIDARKLATMI---SRVQCELKDEVIERIAGTVAAW 432


>gi|262067382|ref|ZP_06026994.1| type I restriction-modification system, M subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378945|gb|EFE86463.1| type I restriction-modification system, M subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 520

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/551 (20%), Positives = 210/551 (38%), Gaps = 67/551 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYL 60
           +       L   IW  A DL G     DF + +L     R +   L     +  V     
Sbjct: 4   KKEQERTELHRTIWAIANDLRGSVDGWDFKQYVLGILFYRYISENLTNYINKGEVEAGNP 63

Query: 61  AFGGSNIDLESFV------KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--- 111
            F  +++  E  +            F   SE  ++     +   NL   + +   N    
Sbjct: 64  DFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLDTIFKNIENS 123

Query: 112 ----------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSN 157
                     K +F+D D +S       A     +    +G+ ++      +       +
Sbjct: 124 ANGTESENDLKGLFDDIDVNSNKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTIDAFGD 183

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG+G
Sbjct: 184 AYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPACGSG 235

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +      +         GQE+   T+ +C   M +  ++ D       +I 
Sbjct: 236 SLLLKFAKILGKDNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK-----FDIA 284

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL++      + F   +SNPP+  KWE D   +          RF P   L   S  
Sbjct: 285 HGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQILIND-----SRFSPAGVLAPKSKA 339

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I+ LP
Sbjct: 340 DLAFIMHSLSWL----APNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCIIQLP 392

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N  K    + +     I++
Sbjct: 393 DNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNSNK----MTEKHINDIVE 445

Query: 455 IYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +  RE+ ++ S ++DY         +     +        +  +E +   +++    + 
Sbjct: 446 KFTKRESLEYISNLVDYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIQRIVAREEE 505

Query: 514 FWLDILKPMMQ 524
              +I K + +
Sbjct: 506 LRKEIDKIIAE 516


>gi|289550025|ref|YP_003470929.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus lugdunensis HKU09-01]
 gi|289179557|gb|ADC86802.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus lugdunensis HKU09-01]
          Length = 518

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 208/544 (38%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE------KY 59
              A L   +W  A DL G+    +F   IL     R L    E   + + +      + 
Sbjct: 9   QQLADLQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKNEDIAAGLLKEDDISYEE 68

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS------------TNTRNNLESYIASF 107
                +   +     +A   F    ++  S L +            +N   N+E+     
Sbjct: 69  AMNNDTYKPIVEKELIARIGFVIEPQFLFSNLINKIEAQTFQIEDLSNAVKNVENSTRGH 128

Query: 108 --SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              D+   +F+D D +S+       ++  L+ K+    + +      +   ++ + YE+L
Sbjct: 129 DSEDDFIHLFDDMDLTSSRLGNTNAKRTQLISKVMVQIATLPFVHSDLEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++    + L        R++YDPTCG+G  L  
Sbjct: 189 IGQFAASAGKKAGEFYTPQQVSTILAKIVTTGRNDL--------RSIYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQE    T+ +    ML+  +           I+   TL
Sbjct: 241 VGAEAK----------VRQYYGQEYNSTTYNLARMNMLLHDVNYKQ-----FQIENDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  +RF   ++NPP+   W  D   +E E        +G  L         F+ H+
Sbjct: 286 ESPAVHDERFDAVVANPPYSAHWSADPSFLEDE----RFSNYGK-LAPKKTADYAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              L    +  G  A+VL    LF G A   E  IR++L+E+ + I+A++ LP +LFF T
Sbjct: 341 IYHL----DDHGTMAVVLPHGVLFRGNA---EGTIRKYLIEDKNYIDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           NI T + +   +K  E    V  I+A+  +   +N    +  + DD   +I+D Y  RE 
Sbjct: 394 NIPTCILVF--KKCREESDDVLFIDASQSFEKGKN----QNHLTDDDVNKIVDTYRQRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S ++           +  P  +    ++  +   +     + +     +   +I +
Sbjct: 448 IDKYSFVVSLDEIRENDYNLNIPRYVDTFEEEEPIDLDQVQQKLKDIDKEIANVESEINE 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|329731922|gb|EGG68280.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 217/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+    +F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDANEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     +  
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFE 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  +    K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKGTIDKYSYSATLQEIAENDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 VEQEINAYLKE 511


>gi|134294136|ref|YP_001117871.1| N-6 DNA methylase [Burkholderia vietnamiensis G4]
 gi|134137293|gb|ABO53036.1| N-6 DNA methylase [Burkholderia vietnamiensis G4]
          Length = 528

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 179/480 (37%), Gaps = 60/480 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG--- 64
              L   +W  A+ L       ++  ++L    L+ +  A    R+ +   +        
Sbjct: 2   NQDLKKTLWAAADKLRASMDAAEYKHIVLGLIFLKYISDAFCERRAQLSAAFADESDDLF 61

Query: 65  --SNID-----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                D      E         F+  +     TL +   + ++   I +  +  +A    
Sbjct: 62  LPDATDHVVALEERDYYTMANVFWVPAVARWETLRAQAKQADIGVRIDAALEAIEADNAR 121

Query: 118 FD--FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                     R + + G L ++    S I          ++  +YE+ + +F +   +  
Sbjct: 122 LKGILDKRFGRTQLEPGKLGELVDLISKIGFGEGHHAKDLLGEVYEYFLGQFATAEGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  VV +   +L                 +YDP CG+GG    +   +   G   
Sbjct: 182 GQFYTPASVVRVLVEVLAPHQG-----------RVYDPCCGSGGMFVQSEKFIESHGGRA 230

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE  P T  +    + IR   +D         +   T  +D     R  Y
Sbjct: 231 ---DDISIYGQEANPTTWRLVAMNLAIRGFAAD------LGKEPADTFHRDQHPDLRADY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF       +   +         R+  G P   + +  +L H+ + L    +  G
Sbjct: 282 VLANPPFNISDWGGERLADDR-------RWAHGTPPAGNANYAWLQHILHHL----SPHG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +A +VL++  + + +    E +IRR ++E D+I+ +VALP  LF  T I   LW L+  K
Sbjct: 331 QAGVVLANGSMTSNQNS--EGDIRRAMVEADVIDVMVALPPQLFLNTQIPACLWFLTKDK 388

Query: 415 T----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL-DIYVSRENGK 463
           +           +RRG+V  I+A  L    R E +  R+ +++   +I   ++  R +G+
Sbjct: 389 SGAPIAGAKPGRDRRGEVLFIDARKLG---RMESRVVRVFDEEHISKIAGTVHRWRADGE 445


>gi|299065074|emb|CBJ36237.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum CMR15]
          Length = 536

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 117/564 (20%), Positives = 216/564 (38%), Gaps = 73/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  +L +++W++A  L G    +DF   I     L+R     E   S +     
Sbjct: 1   MVNK-LTLDTLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEERVSQLMAN-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-IFEDFD 119
               S  + ++ V     +F  T+ +   T  + N    L+          K    +   
Sbjct: 58  -EDLSQAEADAEVCEDQGAFPPTARWGWLTTRTENIGEALDKAFHDIEAGVKGTDLQHVL 116

Query: 120 FSSTIA--RLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            ++     R+     L ++ ++F+  +L + D     ++ + YE+LI++F  +  +   +
Sbjct: 117 TATQYGDKRVLSDHTLQRLLRHFNQYKLGNADLYKADMLGDAYEYLIKQFADDAGKKGGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ VV L   LL           P    ++YDPTCG+GG L ++ +H+A       +
Sbjct: 177 FYTPKGVVQLVVGLL----------DPQPGMSVYDPTCGSGGMLVESAHHIAGLPGGTLL 226

Query: 237 --PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
              P ++ +GQE    T A+    + +  + ++  R        G TL +         K
Sbjct: 227 GGKPNVLLYGQEKNLGTWAIAKLNLYLHNMRAEIER--------GDTLVEPKHLDGDYLK 278

Query: 291 RFHYCLSNPPFGKK--WEKDKDAVEKEHK-------------NGELGRFGPGLPKISDGS 335
            F   ++NPPF  K  W   + A E E +             +   GRFG G P      
Sbjct: 279 TFDRVIANPPFSAKAWWAPLELAAEAEQEGEKKPKAPNYKQVSDPYGRFGYGFPPRGYAD 338

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------END 385
           + F  H+   L+      GR  ++L    LF       E +IR  LL            D
Sbjct: 339 LAFAQHMLASLKA----DGRMGVILPHGVLFRS---GEEGKIRDGLLFGTDAASGQQPGD 391

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           LIEAI+ LP+ LF+ T I   + +L+  K    +GKV +I+A+  +     EGK + ++ 
Sbjct: 392 LIEAIIGLPSALFYNTGIPACVLVLNKNKPATLKGKVIIIDASRDYL----EGKAQNMLR 447

Query: 446 DDQRRQILDIYVS-----RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
                +I+  + +      E   + R++           +     +     +  +     
Sbjct: 448 PGDITRIVARHKAAFDQLTEVESYCRVVTLDEIRKNDGNLNIARYIDNGESEETVDVAAT 507

Query: 501 DITWRKLSPLHQSFWLDILKPMMQ 524
            +    L+         + + + +
Sbjct: 508 LVRLAALADEEAQIDARLNEYLTE 531


>gi|161503348|ref|YP_001570460.1| hypothetical protein SARI_01421 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864695|gb|ABX21318.1| hypothetical protein SARI_01421 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 507

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 208/543 (38%), Gaps = 57/543 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               +  ++   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKITQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKKQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKNASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L  + ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRHLLEDFAGEALNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  +++D  R I+  Y + +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSEDNIRTIVKTYRNGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L       +L        +++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEEEIDLLAVRAEREELKAELAKLEVEMTGYLKE 502

Query: 525 QIY 527
             Y
Sbjct: 503 LGY 505


>gi|2865243|gb|AAC15897.1| type IC modification subunit [Lactococcus lactis]
          Length = 531

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 214/558 (38%), Gaps = 70/558 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRS 53
           A  L   +W +A+ L G    +++   +L     + L  A                P RS
Sbjct: 2   ATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERS 61

Query: 54  AVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
                ++ +   + D  +E+     GY       +    + + N   NL    A F+   
Sbjct: 62  TQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYSYRIKADNYEFNLTDLQAGFNELE 121

Query: 109 ---DNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              +    +F D D +ST      L +   + ++ +    I+L        V+ + YE+L
Sbjct: 122 RQGEEFSGLFADIDLNSTKLGSNALLRNVTITEVLRALDEIDLFEHN--GDVIGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F S   + A +F TP+ V  + + +     +            +YDP  G+G  + +
Sbjct: 180 IGEFASSAGKKAGEFYTPQAVSKIMSEITSIGQE------TRAPFHIYDPAMGSGSLMLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              ++         P  +  HGQEL   T  +    +++  ++ +       N+  G TL
Sbjct: 234 IRRYL-------NNPDQVHYHGQELNTTTFNLARMNLILHGIDKE-----RMNLNNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D  + +  +F     NPP+  KW     A ++   +    RFG  L   S     FL+
Sbjct: 282 DADWPSEEPYQFDSVCMNPPYSAKWS----AADQFLSDPRFERFGK-LAPKSKADFAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF 
Sbjct: 337 HGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFFG 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+ I+  RE
Sbjct: 390 TSIPTTVIILKRNRSRR---DVLFIDASQDFEKRKN----QNVLLDEHIDKIVSIHKKRE 442

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL---HQSFWL 516
           +  +++ +  +         +  P  +    ++  +  +  +    K++      +   L
Sbjct: 443 DIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVAVNTNLLKINEELVQQEQVLL 502

Query: 517 DILKPMMQQIYPYGWAES 534
            ++    +        ES
Sbjct: 503 SMIDNFAESEENQALIES 520


>gi|220911869|ref|YP_002487178.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6]
 gi|219858747|gb|ACL39089.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6]
          Length = 543

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 181/482 (37%), Gaps = 67/482 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK A+ L G    + +  VIL    L+ +  A +  R+ ++ +  A G + 
Sbjct: 13  TMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRNQIQAELEADGLNE 72

Query: 67  IDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIF- 115
             +   +       +   F+ +     S L                 I    D+A  +  
Sbjct: 73  EQIAQLIDDVDEYTSRGVFWVSGRARWSYLAENAKGLPAMDGAAPKSIGLLIDDAMDLIM 132

Query: 116 -EDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFG 167
            ++   ++T+ R+          L ++   F+              ++  +YE+ + +F 
Sbjct: 133 TDNKSLAATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGASKARDLLGEVYEYFLEKFA 192

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP                 +    P     +YDP CG+GG    A   +
Sbjct: 193 KAEGKRGGEFYTP----------AGVVRVLVEVLEPHRG-RVYDPCCGSGGMFVQAEKFL 241

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                       +  +GQEL   T  +    + I  L ++         + G T ++D  
Sbjct: 242 EAHNMEG---SDISVYGQELNERTWRMAKMNLAIHGLNANLAA------RWGDTFARDQH 292

Query: 288 TGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                     + ++NPPF  K            ++    R+  G+P   + +  ++ H+ 
Sbjct: 293 PELTGNTGADFIMANPPFNIKVWS---------RSESDPRWKYGVPPAGNANYAWIQHII 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +KL      GG A +V+++  + +     GE EIR  L+E DL+  +VALPT LF  T I
Sbjct: 344 SKL----APGGSAGVVMANGSMSSNS--GGEGEIRAQLVEADLVSCMVALPTQLFRSTGI 397

Query: 404 ATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
               W  +  KT       +R G+V  I+A +L   +    +  R ++D+   +I + Y 
Sbjct: 398 PVCTWFFAKDKTAGKKGSIDRTGQVLFIDARNLGYMV---DRAERALSDEDITKIANTYH 454

Query: 458 SR 459
           + 
Sbjct: 455 AW 456


>gi|116255297|ref|YP_771130.1| putative type I restriction enzyme [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259945|emb|CAK03042.1| putative type I restriction enzyme [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 519

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 192/481 (39%), Gaps = 59/481 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +           ++K A+ L G+ + +++  V L    L+ +  A E   + +     
Sbjct: 1   MAKDNNGDLGFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEGLHARLTADEY 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN--A 111
           A      D E ++  A   F+  +E     L +   R       +     I  F  N   
Sbjct: 61  ADAE---DPEEYL--AENVFWVPTEARWPFLQANAKRPEIGKLIDEAMEAIERFPSNEGL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +        T+ +     +L ++   FS I LH        ++  +YE+ +  F    
Sbjct: 116 KGVLPKNYARPTLNK----TMLGELIDLFSNIGLHDSKDTAKDLLGRVYEYFLSGFAGSE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TPR VV     +L           P     +YDP CG+GG    + N + + 
Sbjct: 172 GKRGGEFFTPRSVVRTLVEML----------EPYKG-RVYDPCCGSGGMFVQSENFIEEH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE+   T  +    + ++ +++D R +         +  +D     
Sbjct: 221 GGRR---NDIAVYGQEINHTTWRLAKMNLAVQGIDADIRWNNEG------SFHRDELPDL 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + L+NPPF       +       +  E  R+  G P   + +  +L H+ + L    
Sbjct: 272 KADFILANPPFNISDWGGE-------RLAEDTRWKFGKPPNGNANFGWLQHIIHHLAPR- 323

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G A +VL++  + + ++G  E EIR+ ++E D ++ +VALP  LF+ T I   LWIL
Sbjct: 324 ---GTAGVVLANGSMSSQQSG--EGEIRKAMIERDQVDCMVALPGQLFYSTQIPACLWIL 378

Query: 411 SNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +  K+     +RRG++  I+A  L   +    + RR    D   +I   Y    +   +R
Sbjct: 379 ARDKSANGHRDRRGEILFIDARKLGFMV---DRVRREFTADDIEKITGAYHRWRSKPETR 435

Query: 467 M 467
           +
Sbjct: 436 V 436


>gi|307251819|ref|ZP_07533721.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860726|gb|EFM92737.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 536

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/527 (22%), Positives = 206/527 (39%), Gaps = 68/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   IW+ A ++ G     DF + +L     R +            E       S
Sbjct: 25  QERAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYATWS 84

Query: 66  NIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           + D       E  +K  GY  Y  S+   + + + +   NL + +               
Sbjct: 85  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESSAVGYD 143

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 144 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 203

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 204 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLLQ 255

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 256 AKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDITLGDTL 304

Query: 283 SKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            K  F   K F   +SNPP+  KW  D D      +     RF P   L   S     F+
Sbjct: 305 LKPQFGDSKPFDAIVSNPPYSVKWVGDSDPTLINDE-----RFAPAGVLAPKSKADFAFI 359

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 360 LHALSYLSAR----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNLFF 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++  +
Sbjct: 413 GTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFSDK 465

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            +  +  +M++ +          V   +      +   +  L A+I+
Sbjct: 466 ADVDYLVKMVENQAIADNDYNLAVSSYVEAKDEREVINITELNAEIS 512


>gi|308270633|emb|CBX27245.1| hypothetical protein N47_A12740 [uncultured Desulfobacterium sp.]
          Length = 491

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/484 (21%), Positives = 194/484 (40%), Gaps = 39/484 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +++W  A  L G     DF + I P    +R+    +       +  L   G++
Sbjct: 2   TKKQLEDYLWGAANILRGMIDAADFKQYIFPLLFFKRISDVWDEEY----QTALNESGND 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTI 124
           +D   F +   +       +      + +    L+  I+        +  D   D   T 
Sbjct: 58  LDYAGFRENHRFQIPKGCHWEDVRKKTIDVGAALQKAISGIEKANFEMLHDVFGDAQWTN 117

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            R      +  + ++FS ++L    VP  +M   YE+LI++F  +    A +F T R VV
Sbjct: 118 KRRMSDEKMLDLIEHFSQMDLTVSNVPHDIMGEGYEYLIKKFADDSGHTAAEFYTNRTVV 177

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T +            P    ++YDPTCG+GG L  ++ H+ + G  ++    L  +G
Sbjct: 178 KLMTQIT----------DPQSAESIYDPTCGSGGILLSSVLHLKERGKEYRN---LKLYG 224

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL   T A+    M +  ++      + +     S    +    K+F   ++NPP+  K
Sbjct: 225 QELNLITSAIARINMFMHNVD---EFLIVQGDTLESPQILENDELKQFDVIMANPPYSVK 281

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K        N   GR   G P        F  H+   L+      GR+ ++     
Sbjct: 282 RWNQKK-----WMNDPFGRNIWGTPPQGCADYAFQQHIMKSLK---PDTGRSVVLWPHGV 333

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF       ES+IRR ++E D ++A++ L  +LF+ +++ + L +   +K +ER+GK+  
Sbjct: 334 LFRD----AESQIRRKMIEEDYVDAVIGLGKNLFYNSSMESCLLVCRMKKPKERKGKIIF 389

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRP 483
           I+A           K    +     ++I D Y   +  + F++++  +        +   
Sbjct: 390 IDAKQE----LRIEKTNAWLELQHIKKIADAYWKFKEAEGFAKVMSNKEVLENNGNLSLQ 445

Query: 484 LRMS 487
           L + 
Sbjct: 446 LYVK 449


>gi|149920794|ref|ZP_01909257.1| possible type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
 gi|149818312|gb|EDM77764.1| possible type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
          Length = 511

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/532 (21%), Positives = 216/532 (40%), Gaps = 56/532 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +   L +++W  A  L G     D+ + I P    +RL    +   +     Y 
Sbjct: 4   MSD-TLTQDELESYLWGAATILRGLVDAGDYKQFIFPLVFYKRLSDVWDEDYAEALADYD 62

Query: 61  AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                      E FV   G  + +  + + +   +   ++ + +  A+     + IF D 
Sbjct: 63  DSEELALAQANERFVIPEGAHWNDLRKAAKNVGKA--IQDAMRAIEAANPGRLEGIFGDA 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +++   RL    L   + ++FSG  L    VP+ ++ + YE+L+ +F  +    A++F 
Sbjct: 121 PWTNK-NRLPDHTLKS-LLEHFSGQVLSIARVPEDMLGDGYEYLVGKFADDGGSTAQEFY 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R +VHL   +L           P    ++YDPTCGTGG L  A+  V   G   +   
Sbjct: 179 TNRTLVHLMAQML----------KPQDGESIYDPTCGTGGMLLSALAEVRRTGGDQRT-- 226

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQE    T ++    +++  +E          I++G TL++  F      + F  
Sbjct: 227 -LGLYGQERNHMTASIARMNLVLHGVED-------FEIKRGDTLARPRFVEGDRLRTFDV 278

Query: 295 CLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPP+  K+W ++    +        GR   G P        F  H+   ++      
Sbjct: 279 VLANPPYSIKRWNREAWGADAW------GRNFLGTPPQGRADYAFFQHILKSMDPET--- 329

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR AI+     LF       E ++R+ L+E DL+E ++ L  +LFF + +   +    + 
Sbjct: 330 GRCAILFPHGVLFR----KAEQDLRQKLVEADLVECVLGLGPNLFFNSPMEACVVFCRSE 385

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
           K   R+G++  I+A +     R        +  + +++I   Y +  +   FS++     
Sbjct: 386 KPAARKGRILFIDAVNEIARERAVS----FLRPEHQQRIFGAYEAFGDESSFSKVATLDE 441

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADIT------WRKLSPLHQSFWLDI 518
              R   +  PL +  ++ K      E          W +     ++FW  +
Sbjct: 442 VAARGHNLSIPLYVKRVVKKKKKKAAEDSGARSLSEVWTEWEQEDRAFWQQM 493


>gi|296119614|ref|ZP_06838172.1| type I restriction-modification system, M subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967497|gb|EFG80764.1| type I restriction-modification system, M subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 518

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 121/531 (22%), Positives = 204/531 (38%), Gaps = 69/531 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----EKY 59
                A L   IW+ A DL G     DF   +L     R +   L    + +     E  
Sbjct: 2   KEAQRAELHKTIWRIANDLRGSVDGWDFKSYVLGLLFYRFISENLTEYLNRLEHEAGETE 61

Query: 60  LAFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
             +   N +   F +         F   SE  ++      T  NL   + +         
Sbjct: 62  FNYAELNDEDAEFGREWTVSDKGFFILPSELFVNVRARAKTDENLNEKLEAVFKNIEGSA 121

Query: 108 -----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSNI 158
                 D+ K +F+D D +ST      A     + K    I +L      D    V  + 
Sbjct: 122 VGTDSEDDLKGLFDDLDVNSTRLGNSVAKRNATLVKLLEAIGDLPLGDWSDNTIDVFGDA 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + S   +   ++ TP++V  L T + +    ++ K        +YDP  G+G 
Sbjct: 182 YEYLMGMYASSAGKSGGEYYTPQEVSELLTRITVVGKTSVNK--------VYDPAVGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +   G  +         GQE+   T+ +    M +  +          NI  
Sbjct: 234 LLLKFEKVLGKGGVRNG------YFGQEINLTTYNLARINMFLHNVNY-----ADFNIAL 282

Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       + F   +SNPP+  KWE D + V          R+ P   L   S   
Sbjct: 283 GDTLTDPKHWDDEPFEAIVSNPPYSIKWEGDANPVLIND-----PRYSPAGVLAPKSKAD 337

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F MH+ + L +     G AAIV     L+   A   E +IR++L++N+ I+AI+ LP 
Sbjct: 338 LAFAMHILSWLAV----NGTAAIVSFPGVLYRAGA---EKKIRKYLIDNNYIDAIIQLPP 390

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           DLFF T I T + +L   K +     V  I+A++ +    N+ K    + ++ +  ILD 
Sbjct: 391 DLFFGTTIGTCIMVLKKSKKD---NSVLFIDASEQFVRSGNKNK----LAEENQATILDA 443

Query: 456 YVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           ++ RE+   F+ ++           + V   ++     +   +  L A+I 
Sbjct: 444 FIDREDVDHFAELVPNEEISDNDYNLTVSSYVKAEDKRETVDITELNAEIK 494


>gi|297618846|ref|YP_003706951.1| type I restriction-modification system, M subunit [Methanococcus
           voltae A3]
 gi|297377823|gb|ADI35978.1| type I restriction-modification system, M subunit [Methanococcus
           voltae A3]
          Length = 514

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/542 (22%), Positives = 213/542 (39%), Gaps = 71/542 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYL 60
           T+       L   +W  A DL G+ +H +F   IL     R L   LE   S +  E  +
Sbjct: 5   TKQKEQKNQLNTKLWSIANDLRGNMEHNEFKNYILGVIFYRYLSEKLENRVSNLLKEDNI 64

Query: 61  AFGGSNIDLESFVKVA-------GYSFYNTSEYSLSTLGSTNTRN----NLESYIASFS- 108
            +  +  D E   ++        GY       +S      TNT++     L   I S + 
Sbjct: 65  TYAEAWNDEEYTEELKEELLDEIGYYIAPEYLFSTMVNKITNTKDFTIEELSKAIGSINE 124

Query: 109 --------DNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                   D  + +F+D D  S     +   ++ L+ K+    + I+   +     V+ +
Sbjct: 125 STLGTKSQDAFENLFDDLDLESNKLGQKVEARSKLMAKVLSKIAEIDFSHEDSEIDVLGD 184

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI +F S   + A +F TP+ V  +   ++      L        +++YDPTCG+G
Sbjct: 185 AYEFLISQFASSAGKKAGEFYTPQQVSKILAKIVTMGKKDL--------KSVYDPTCGSG 236

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L                  +   +GQE+   T+ +    ML+  +  D       +IQ
Sbjct: 237 SLLLRISKEA----------DVRKFYGQEVISTTYNLARMNMLLHNVSYDK-----FDIQ 281

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
               L      GK+F   ++NPP+ + W  D      + +  E G+  P     S     
Sbjct: 282 NDDVLENPKHLGKKFDAVVANPPYSQTW--DNSMHNDDDRFSEYGKMAPN----SKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396
           F+ H+   L       G  A+VL    LF G A   E  IR++L+ E + ++A++ LP++
Sbjct: 336 FVQHMIYHL----ADKGVMAVVLPHGVLFRGNA---EGTIRKYLIKEKNYLDAVIGLPSN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +   +K  E    V  I+A++ +   +N    + I+ D+   +I+D Y
Sbjct: 389 IFFGTGIPTTILVF--KKCRETGDNVLFIDASNDYEPGKN----QNILRDEDVEKIIDTY 442

Query: 457 VSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R+   K+S +            +  P    ++        +  +    ++  L + F 
Sbjct: 443 KERKAIDKYSAVATLDDIKENDYNLNIP---RYVDTFEEEEPVNMEKVKAEIKELKEQFL 499

Query: 516 LD 517
             
Sbjct: 500 KQ 501


>gi|301166115|emb|CBW25690.1| putative type I restriction enzyme modification protein
           [Bacteriovorax marinus SJ]
          Length = 580

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 112/501 (22%), Positives = 192/501 (38%), Gaps = 60/501 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   + A +   +W   +   G     ++   IL    ++ L    E    A  E++ 
Sbjct: 1   MTQK-VTQAEINKILWDACDTFRGVVDAGEYKNYILTMLFIKYLSDTYEEKYEAYSEQFK 59

Query: 61  AFG---GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    ++ E+FV   G  F +  +              LE    +  +  + +F +
Sbjct: 60  GNETRIKRALEKENFVLPDGCHFNDIYKQKEEKNIGEIIDVALEKIENANKEKLENVFRN 119

Query: 118 FDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
             F+S         +   L  +  +F+   + +    + +  V+ N YE+LI  F +   
Sbjct: 120 VSFNSEANLGKTKSRNARLKHLLDDFNSPKLNMRKSHIGNMDVIGNAYEYLIANFAAGAG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L   L+           P     +YDPTCG+G  L      +   G
Sbjct: 180 KKAGEFYTPSEVSQLLAMLV----------KPEKGSRIYDPTCGSGSLLIRCAEQLTKNG 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
                      +GQE+   T A+    M +   +          I+ G T+   +     
Sbjct: 230 -----INDFQIYGQEITGATWALAKMNMFLHGFDRS-------VIENGDTIRNPIHLEND 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF             E K+   GRF  G+P  S G + F+ H+   L 
Sbjct: 278 ELMTFDVVVANPPFSLDKWG-----IDEAKSDSYGRFNYGIPPKSYGELAFVQHMVASL- 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GR A+VL    LF G A   E  IR  L+ +DL+EA++ LP+ LFF T I   +
Sbjct: 332 ---NENGRCAVVLPHGVLFRGSA---EKRIREGLINDDLLEAVIGLPSGLFFGTGIPASI 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------- 459
            + + +K+ +R+ KV  IN    +   +N    +  + D     I+  YV          
Sbjct: 386 MVFNKKKSADRKDKVLFINGDLEYQEGKN----QNKLRDQDINHIVANYVEFKTEGLYRH 441

Query: 460 ENGKFSRMLDYRTFGYRRIKV 480
           E+  +SR+++          +
Sbjct: 442 EDKHYSRVVELDEIKENDYNL 462


>gi|71276002|ref|ZP_00652284.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Dixon]
 gi|71899052|ref|ZP_00681217.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
 gi|71163235|gb|EAO12955.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Dixon]
 gi|71731165|gb|EAO33231.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
          Length = 527

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 120/538 (22%), Positives = 209/538 (38%), Gaps = 75/538 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----- 57
                 A L   IW+ A DL G     DF   +L     R +   L    +A        
Sbjct: 4   NKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRTGTE 63

Query: 58  ----KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF----- 107
                Y  F  +  +L     V    FY   SE  +         +NL   ++       
Sbjct: 64  KDDFDYAQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIE 123

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------- 152
                     + K +F+D D +S+      A    K+ K    I   P T  +       
Sbjct: 124 RSAIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGGFTENT 183

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L++ + S   +   +F TP++V  L T + +     + K        +YD
Sbjct: 184 IDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK--------VYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L + +  +               +GQE+   T+ +C   M +  +  +    
Sbjct: 236 PACGSGSLLLNFVKVLGHDKVRQG------FYGQEINLTTYNLCRINMFLHNVNYEK--- 286

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL+       + F   +SNPP+  KW+ D +A+          RF P   L
Sbjct: 287 --FHIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLIND-----PRFAPAGIL 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++
Sbjct: 340 APKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVD 392

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF T IAT + +L   K +        ++A+ L+         +  ++   
Sbjct: 393 AVIQLPADLFFGTTIATCIIVLKKSKGDNA---TLFMDASSLFVR----SGTKNKLSTAH 445

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +++ILD    R++   F+R++D          I V   +  +   +   +  L +DI 
Sbjct: 446 QKKILDSLTVRQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNSDIA 503


>gi|331654119|ref|ZP_08355119.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
 gi|331047501|gb|EGI19578.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
          Length = 535

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 115/542 (21%), Positives = 202/542 (37%), Gaps = 74/542 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTEFD--KQKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58

Query: 57  ----------EKYLAFGGSNIDLESFVKVAGYSFYNTSE-----------YSLSTLGSTN 95
                        L +  +  D+  F K+     +   E                +   N
Sbjct: 59  PKQKEGKRQPPLTLWYEQNEQDISEFEKLMRRKVHYVIEPQYLWTSIAEMARTQHVKLLN 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-- 151
           T      YI   SF+   + +F + + +S            ++CK    I          
Sbjct: 119 TLQAGFKYIEEESFASVFRGLFSEINLASEKLGKTYGERNDRLCKIIKEIADGLKQFSTN 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              I +++D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQRSHIDSVFD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNIRKRMGQHG-------IGKIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              +I  G TL  D    +        +F   ++NPPF  +WE  +   +          
Sbjct: 287 SEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPSETLADDVRFKN---- 342

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L+      G  AI+L    LF       E+ IR  LL+
Sbjct: 343 --YGLAPKSAADFAFLLHGFHFLK----EDGVMAIILPHGVLFRSGT---EARIRTKLLK 393

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ I+ LP +LFF T I   + +L   K  +    +  INA + +    ++GK++  
Sbjct: 394 DGHIDTIIGLPANLFFSTGIPVCILVLKKCKKPD---DILFINAAEHF----DKGKRQNQ 446

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEA 500
           I+ D  ++I+D Y  R E  +++R +           + + R +  +   ++  L  + A
Sbjct: 447 ISSDHIKKIIDAYKFRKEEPRYARRVSMEEIEKNDFNLNISRYVSTAEPEEEINLTAVHA 506

Query: 501 DI 502
           ++
Sbjct: 507 EL 508


>gi|237731957|ref|ZP_04562438.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907496|gb|EEH93414.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 507

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/526 (21%), Positives = 205/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NNKISQDTINKALWSACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKIVSG 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HD----SRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I    K ++   KV LI+A+  + + +N    +  ++ +  ++I++ Y   +N  K+
Sbjct: 390 AILIFKKHKVDD---KVLLIDASREYKAGKN----QNQLSAENIQKIVNTYREGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  L  + A+    K  
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAERDQLKAE 488


>gi|225023393|ref|ZP_03712585.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC
           23834]
 gi|224943871|gb|EEG25080.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC
           23834]
          Length = 513

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 119/534 (22%), Positives = 207/534 (38%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  T   A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MT-ATQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y  S+   +     +    L + +           
Sbjct: 60  YAAMSDSIITPEIKDDAVKVKGYFIY-PSQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 119 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP++V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNQ-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+K      K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTKPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 388 NLFYGTSIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLTEEHIAEIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREAVDIKQLNAEIS 491


>gi|37680392|ref|NP_935001.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199139|dbj|BAC94972.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 499

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 112/530 (21%), Positives = 211/530 (39%), Gaps = 44/530 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       E+      + 
Sbjct: 5   NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFEDAMEQVGDEELAK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D+   +++     +         +G      +    I   +     IF D  +++   R
Sbjct: 65  GDMFHRIQIPANCHWKDVFAETKDIGQA--LKDSFRGIELENPQLHGIFGDASWTNK-ER 121

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L
Sbjct: 122 LSD-ELLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRL 180

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDP CGTGG L + ++HV + G     P +L   GQE
Sbjct: 181 MVNIL----------DPQANESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T A+    + +   E D        ++    L  D      F   ++NPPF  K  
Sbjct: 228 KNLTTEAIARMNLFLHGQE-DFEIVRGDTLRDPKFLKNDQLEN--FDCVIANPPFSLKEW 284

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                      +   GR   GL   ++G   ++ H+   L    N  GR A+VL    LF
Sbjct: 285 G-----YDYWTSDPYGRASFGLAPKTNGDFAWVQHMFASL----NDEGRMAVVLPHGVLF 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E +IR  LL+ + I A++ + ++LF+ T I   + +L   + EE +  V ++N
Sbjct: 336 RGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKVRPEEHKDHVLIVN 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------ENGKFSRMLDYRTFGYRRI 478
           A +++T  R     +  +++ Q  +I  IY           +    +R + +        
Sbjct: 393 AEEIFTKGRA----QNTLSEPQADEIYGIYQKMRTKGPKVDDIEGVARWVPHSEIEENDF 448

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            +     +   L++  ++  EA   ++K     +    ++   ++++ + 
Sbjct: 449 NLNIARYVQKPLEEETISVEEALKDFQKKLSALEQAEQELEALLIKEGFE 498


>gi|332308206|ref|YP_004436057.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175535|gb|AEE24789.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 535

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 187/478 (39%), Gaps = 65/478 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            S    +W  A  L G  + +++  V+L    L+ +    E  R ++ E+ ++     I+
Sbjct: 11  TSFEQNLWDTANKLRGSVESSEYKHVVLSLIFLKFISDKFEAQRKSLVEQGMSDYVEQIE 70

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFS 121
                      F+   +   S +     ++++          +   + + K    D  FS
Sbjct: 71  ----FYAKDNVFFLPEQARWSYIQQQMKQDDIAVKIDTALHTVEKNNPSLKGALPDNYFS 126

Query: 122 STIARLEKAGLLYKICKNFSGI-------ELHPDTVP--DRVMSNIYEHLIRRFGSEVSE 172
                  K   L     N           E   D +   + ++  +YE+ + +F +   +
Sbjct: 127 RLGLVSSKLASLIDTINNIDTYTSKSSANECGSDDIKSEEDLVGRVYEYFLGKFAASEGK 186

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP+ +V L   ++                 +YDP CG+GG    ++  +    S
Sbjct: 187 GGGEFYTPKSIVSLIAEMIEPYKG-----------KIYDPCCGSGGMFVQSLKFI---DS 232

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE    T+ +    + +R + +      +     G T  KD     + 
Sbjct: 233 HKGNKKDISIYGQEYTNTTYKLAKMNLAVRGISA------NLGEVAGDTFFKDQHPDLKA 286

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF +K  + ++ +  + +       G  +P   + +  ++MH+ +KL    + 
Sbjct: 287 DFIMANPPFNQKQWRGENELVDDPRWS-----GFDVPPTGNANYAWIMHMISKL----SE 337

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  VL++  +      SGE EIR+ ++E DL++ ++ALP  LF+ T I   LW +S 
Sbjct: 338 HGTAGFVLANGSM--SSNTSGEGEIRKKIIEKDLVDCMIALPGQLFYTTQIPVCLWFISK 395

Query: 413 RKT-----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            K              R+G+   I+A ++ + +    +  + +  D    I   Y + 
Sbjct: 396 NKKAVDASEDFAKRRNRQGETLFIDAREMGSMV---SRVNKELTTDDIAHIAQTYHAW 450


>gi|209527338|ref|ZP_03275846.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209492196|gb|EDZ92543.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 497

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/457 (21%), Positives = 183/457 (40%), Gaps = 62/457 (13%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
           + G     ++  V L    L+ +  A +     +  +         D + +V      F+
Sbjct: 1   MRGHMDAAEYKHVTLGLIFLKYISDAFQERYDDLAARQETDYTDPEDRDEYV--GENMFW 58

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLY 134
              E   ST+ ++  + ++   I    D A    E  +        S   R +     L 
Sbjct: 59  VPQEARWSTIQASAKQPDIGKRI----DEAMLAIEKENPRLKGVLPSNYNRPDLDKQRLG 114

Query: 135 KICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           ++    S I L   +     ++  +YE+ + +F  +  +G  +F TP+ VV L   ++  
Sbjct: 115 ELIDLISTIGLGDAENRSKDILGRVYEYFLGQFAEKEGKGGGEFYTPQSVVRLLVEMI-- 172

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                    P     +YDP CG+GG    +   V   G        +  +GQE  P T  
Sbjct: 173 --------QPYKG-RIYDPCCGSGGMFVQSEKFVEAHGGRKG---DIAIYGQESNPTTRR 220

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAV 312
           +C+  + IR ++       +   +Q  + + DL    +  Y L+NPPF    W  +K A 
Sbjct: 221 LCLMNLAIRGIDG------NIGDRQADSFTNDLHKDLKADYILANPPFNISDWWNEKLA- 273

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                  E  R+  G P   + +  ++ H+ + L       G A  VL++  + + ++G 
Sbjct: 274 -------EDVRWQYGTPPKGNANYAWIQHIIHHL----APNGIAGFVLANGSMSSNQSG- 321

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKV 422
            E +IR+ L+ +DL++ ++ALP  LF+ T I   LW ++  K+            R+G+ 
Sbjct: 322 -EGDIRKALIASDLVDCMIALPGQLFYTTQIPACLWFVARDKSGKPTAGHKPCRNRKGQT 380

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             I+A  L   I    +  R + D++  +I   Y + 
Sbjct: 381 LFIDARKLGVLI---DRTHRELIDEELARIAGTYQAW 414


>gi|194335867|ref|YP_002017661.1| type I restriction-modification system, M subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308344|gb|ACF43044.1| type I restriction-modification system, M subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 544

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/548 (21%), Positives = 203/548 (37%), Gaps = 78/548 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MTE   +   +   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTE--QNQKQMGTTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGTDF 58

Query: 59  ------------YLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGST---------N 95
                        L +  +  D   F K      +     +Y   ++            +
Sbjct: 59  PDSREQPGTTPLQLWYNNNPGDSAEFEKQMRLKVHYVIQPQYLWGSIAEMARTQDGELLH 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T      YI   SF+   + +F + + SS            K+C   + I   L   +  
Sbjct: 119 TLQKAFDYIENESFASTFQGLFSEINLSSEKLGKHYTDRNAKLCTIITKIAEGLAGFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              + ++ D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVTLDSQEPSSGKKKYLISVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRKKMGQYG-------IGKIYGQESNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D            K F   ++NPPF  +W       E     G+  R
Sbjct: 287 SEFEIFHGDTLLNDWEMLREANPAKKKHFDAVVANPPFSYRW-------ELTDALGDDVR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H    L       G  AI+L    LF    G  E  IR  LL
Sbjct: 340 FKNYGLAPKSAADFAFLLHGFQYL----AKEGTMAIILPHGVLFR---GGVEERIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA++ +      GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINASEHFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            +  D   +I++ Y  R E  ++SR +   +  + GY  + + R +  +   ++  L  +
Sbjct: 446 RLRQDDIDKIVETYQFRTEEERYSRRVSMDEIESNGY-NLNISRYISTATAEEEIDLTAV 504

Query: 499 EADITWRK 506
            AD+   +
Sbjct: 505 HADLVNLE 512


>gi|238923778|ref|YP_002937294.1| type I restriction-modification system, M subunit [Eubacterium
           rectale ATCC 33656]
 gi|238875453|gb|ACR75160.1| type I restriction-modification system, M subunit [Eubacterium
           rectale ATCC 33656]
          Length = 544

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 123/554 (22%), Positives = 215/554 (38%), Gaps = 73/554 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRS 53
           +       L   IW  A++L G     DF   +L     R +   L         E   +
Sbjct: 28  KKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTAYVNVGEIEAGNT 87

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
                 +    +    E  V+  G+ F   SE   +        NNL   +         
Sbjct: 88  DFDYAKMKDADAEEAREGLVQEKGF-FILPSELFCNVRVRAAEDNNLNETLEKVFRHIEE 146

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV---MS 156
                   ++   +F+D+D +S       A    ++ K   GI  ++  +V D       
Sbjct: 147 SAKGSQSENSFAGLFDDYDVNSNKLGSTVAKRNERLVKLLDGIASMNLGSVKDHDIDAFG 206

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP CG+
Sbjct: 207 DAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKTVNK--------VYDPACGS 258

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A   +       K    +   GQE+   T+ +C   M +  +  D       +I
Sbjct: 259 GSLLLKAEKVLG------KDSVKIGFFGQEINITTYNLCRINMFLHDIGFDK-----FDI 307

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           +   TL+       + F   +SNPP+  KWE D + +          RF P   L   S 
Sbjct: 308 ECEDTLTNPQHWDDEPFELIVSNPPYSIKWEGDDNPLLIND-----PRFSPAGVLAPKSK 362

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+ ++ L
Sbjct: 363 ADLAFIMHSLSWLAA----NGTAAIVCFPGIMYRGGA---EKKIRQYLIDNNFIDCVIQL 415

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+IAT + ++   KT+        I+A++    + N       +  +   +I+
Sbjct: 416 PSNLFFGTSIATCIMVMKKNKTD---NNTLFIDASNECVKVTN----NNKLTKENIDRIV 468

Query: 454 DIYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           D++ +R E    S +  Y     +     V   +    I +K  + +L A+I  +++   
Sbjct: 469 DVFSNRTEEEHLSYLASYEEIKEKEYNLSVSTYVEAEDIREKIDIVKLNAEI--KEIVAR 526

Query: 511 HQSFWLDILKPMMQ 524
            Q    +I K + +
Sbjct: 527 EQVLRDEIDKIIAE 540


>gi|224826952|ref|ZP_03700050.1| type I restriction-modification system, M subunit [Lutiella
           nitroferrum 2002]
 gi|224600785|gb|EEG06970.1| type I restriction-modification system, M subunit [Lutiella
           nitroferrum 2002]
          Length = 544

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/572 (20%), Positives = 214/572 (37%), Gaps = 76/572 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+F      L N +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTDF--EKQKLGNTLWTIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGADY 58

Query: 60  LA-------------FGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
                          +  + +D+  F K      +     +Y    +             
Sbjct: 59  PELEPEDRLSPLSFWYADNAVDVPEFEKQMRRKVHYVIEPQYLWGNIAEMARTQDDELLS 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T  +   YI   SF+   + +F + + +S       A    ++CK  + I   L   +  
Sbjct: 119 TLQSGFKYIEEESFASTFRGLFSEINLASDKLGKTYAERNARLCKIIAEIAKGLGQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              + ++ D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDP 268
             CG+G  L +  + +   G       I   HGQE    T+ +    ML+  +   E D 
Sbjct: 239 FACGSGSLLLNVRHRMGPHG-------IGKIHGQEKNITTYNLARMNMLLHGVKDSEFDI 291

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327
               +   +       +     +F   ++NPPF  +WE  +         GE  RF   G
Sbjct: 292 FHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEAL-------GEDTRFKNYG 344

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL +  I
Sbjct: 345 LAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLLNDGHI 397

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T I   + +L   K  +    V  INA + +   + + +  R   D+
Sbjct: 398 DTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFEKGKRQNQLLR--TDE 452

Query: 448 -------QRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR 497
                     +I+D Y  R E  ++SR +           + + R +  +   ++  L  
Sbjct: 453 MPSGGIGHIEKIIDTYQYRKEEPRYSRRVSMEEIEKNDFNLNISRYVSTAETEEEIILGN 512

Query: 498 LEA-----DITWRKLSPLHQSFWLDILKPMMQ 524
           +       D   +  +  H +F  ++  P++ 
Sbjct: 513 VHEQLLSLDKQIKAATEKHNAFLKELGLPLLP 544


>gi|319428577|gb|ADV56651.1| N-6 DNA methylase [Shewanella putrefaciens 200]
          Length = 499

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 116/518 (22%), Positives = 209/518 (40%), Gaps = 53/518 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
             L   +W  A  + G    +D+   I P    +R+    +        +      +  D
Sbjct: 7   KDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEYEDALTQIGDEELAKGD 66

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +   +++     +++       +G      +    I   +     IF D  +++   RL 
Sbjct: 67  MFHRIQIPELCHWDSVFSETKDIGQA--LKDAFRGIEMANPKLHGIFGDASWTNK-ERLS 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L  
Sbjct: 124 D-ELLATLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMV 182

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L           P    ++YDP CGTGG L + ++HV + G     P +L   GQE  
Sbjct: 183 NIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGD---PRLLKIKGQEKN 229

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKK 304
             T A+    + +   E         +I +G TL +  F      + F   ++NPPF  K
Sbjct: 230 LTTEAIARMNLFLHGQED-------FDIVRGDTLREPKFLKHDRLETFDCVIANPPFSLK 282

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                            GR   GL   ++G   ++ H+   L    N  GR A+VL    
Sbjct: 283 EWG-----YDYWSADPYGRAKYGLAPKTNGDFAWVQHMFASL----NESGRMAVVLPHGV 333

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E  IR  LL+ + I A++ + ++LF+ T I   + +L  ++    +  V +
Sbjct: 334 LFRGGA---EGTIRENLLKENRIVAVIGVASNLFYGTGIPACILVLRKQRPVAHQDHVLI 390

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV--------SRENGKFSRMLDYRTFGYR 476
           INA +++T  R     +  +++ Q   I DIY         + +    +R + +      
Sbjct: 391 INAEEIFTKGRA----QNTLSETQADNIYDIYRQMRTKGPEADDIEGVARWVSHSEIEDN 446

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWR-KLSPLHQS 513
              +     +   L+K  +   EA   ++ KL+ L ++
Sbjct: 447 DFNLNIARYVQKPLEKETITVEEALKDFQLKLAALEKA 484


>gi|251788561|ref|YP_003003282.1| type I restriction-modification system, M subunit [Dickeya zeae
           Ech1591]
 gi|247537182|gb|ACT05803.1| type I restriction-modification system, M subunit [Dickeya zeae
           Ech1591]
          Length = 535

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 116/542 (21%), Positives = 208/542 (38%), Gaps = 74/542 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTEF--EKQKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58

Query: 57  ------EKY----LAFGGSNIDLESFVKVAGYSFYNTSE-----------YSLSTLGSTN 95
                 E+     L +  +  D+  F K+     +   E                +   N
Sbjct: 59  PKQKEGERQPPLTLWYEQNEQDVPEFEKLMRRKVHYVIEPQYLWTSIAEMARTQHVKLLN 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T      YI   SF+   + +F + + +S            ++CK    I   L   +  
Sbjct: 119 TLQAGFKYIEEESFASVFRGLFSEINLASEKLGKTYGERNDRLCKIIKEIADGLKQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              + +++D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQRSHLDSVFD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNIRKRMGQHG-------IGKIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              +I  G TL  D    +        +F   ++NPPF  +WE  +   +          
Sbjct: 287 SEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPTETLADDVRFKNH--- 343

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L+      G  AI+L    LF   A   E+ IR  LL+
Sbjct: 344 ---GLAPKSAADFAFLLHGFHFLK----EDGVMAIILPHGVLFRSGA---EARIRTKLLK 393

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +    ++GK++  
Sbjct: 394 DGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHF----DKGKRQNQ 446

Query: 444 INDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEA 500
           I+ D  ++I+D Y  R+   +++R +           + + R +  +   ++  L+ + A
Sbjct: 447 ISSDHIKEIIDTYKFRKGKTRYARRVSMEEIEKNDFNLNISRYVSTAEAEEEIKLSSVHA 506

Query: 501 DI 502
           ++
Sbjct: 507 EL 508


>gi|46580119|ref|YP_010927.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449535|gb|AAS96186.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233887|gb|ADP86741.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 506

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 104/533 (19%), Positives = 204/533 (38%), Gaps = 43/533 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   + + +W   +   G    + +   +L    L+ +    +      + +Y       
Sbjct: 6   SQKEVNDAVWNACDTFRGVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEYGDAPELI 65

Query: 67  IDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            ++   E FV     SFY   E              L +   +       +F+D  F+ST
Sbjct: 66  EEMMKNERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFNST 125

Query: 124 I--ARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 +K  +L  + ++FS   + L P  + +  ++ N YE LI+ F +   + A +F 
Sbjct: 126 KLGDDKQKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGEFY 185

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L   L+          +P     + DP CG+   L      + D   + K   
Sbjct: 186 TPPEVSQLIAELV----------NPQEGDEICDPACGSASLLMKCAKLIKDRFGNRKY-- 233

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQE    T ++    M +   E + R +    ++    L  D    K F   ++N
Sbjct: 234 --ALYGQEAIGSTWSLAKMNMFLHS-EDNHRIEWGDTLRNPLLLDGDDHL-KHFDIVVAN 289

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       + A     +    GRF  G+P  + G   F++H+   L+    G GR  +
Sbjct: 290 PPFSLDKWGHEAA-----EADRFGRFRRGIPPKTKGDYAFILHMIETLK---PGTGRMGV 341

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF   +   E EIR+ L++ +L++ ++ LP  LF+ T I   + +    K +  
Sbjct: 342 VVPHGVLFRASS---EGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKNKKD-- 396

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
              V  I+A+  +   +N    +  + D+  +++LD   +RE+  K++ +          
Sbjct: 397 -NNVLFIDASREYQDGKN----QNFLRDEDIQKVLDTAKARESVDKYAYLATLEEIREND 451

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             +  P  +    ++  +         ++L        +++   + +  Y  G
Sbjct: 452 FNLNIPRYVDTFEEEEEIDLEAVLKERKELKADLAKLEVEMEGYLKELGYLTG 504


>gi|170731320|ref|YP_001776753.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
 gi|167966113|gb|ACA13123.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
          Length = 527

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/538 (22%), Positives = 209/538 (38%), Gaps = 75/538 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----- 57
                 A L   IW+ A DL G     DF   +L     R +   L    +A        
Sbjct: 4   NKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRTGTE 63

Query: 58  ----KYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF----- 107
                Y  F  +  +L     V    FY   SE  +         +NL   ++       
Sbjct: 64  KDDFDYAQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFANIE 123

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------- 152
                     + K +F+D D +S+      A    K+ K    I   P T  +       
Sbjct: 124 RSAIGSDSEQDIKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGGFTENT 183

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L++ + S   +   +F TP++V  L T + +     + K        +YD
Sbjct: 184 IDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK--------VYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L + +  +               +GQE+   T+ +C   M +  +  +    
Sbjct: 236 PACGSGSLLLNFVKVLGHDKVRQG------FYGQEINLTTYNLCRINMFLHNVNYEK--- 286

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL+       + F   +SNPP+  KW+ D +A+          RF P   L
Sbjct: 287 --FHIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNALLIND-----PRFAPAGIL 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++
Sbjct: 340 APKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVD 392

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF T IAT + +L   K +        ++A+ L+         +  ++   
Sbjct: 393 AVIQLPADLFFGTTIATCIIVLKKSKGDNA---TLFMDASSLFVR----SGTKNKLSTAH 445

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +++ILD    R++   F+R++D          I V   +  +   +   +  L +DI 
Sbjct: 446 QKKILDGLTVRQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNSDIA 503


>gi|260913242|ref|ZP_05919724.1| type I restriction-modification system [Pasteurella dagmatis ATCC
           43325]
 gi|260632829|gb|EEX50998.1| type I restriction-modification system [Pasteurella dagmatis ATCC
           43325]
          Length = 537

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/543 (20%), Positives = 202/543 (37%), Gaps = 72/543 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTQ--EQLNQLGKTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGKDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGST---N 95
                        + +G +   +  F K      +          S   L+ + S    N
Sbjct: 59  PQLADDDRRTPLSVWYGENADFVADFEKQMRRKVHYVIKPEFLWGSVAELARIQSDQLLN 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T      YI   SF      +F + + +S            ++ +    I   +   +  
Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNSEKLGKNYDKRNDRLVEIVKCIAEGISEFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F S   + A +F TP+ V  + + ++          +   +  + D
Sbjct: 179 SDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTVLSRIVTLDSQNPASGNKIKLDNVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +A    H         +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHQMAQNNGHIG-----KIYGQEKNITTYNLARMNMLLHGV-----KD 288

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              +I  G +L  D              F   ++NPPF  +WE       KE    +   
Sbjct: 289 TEFSIHHGDSLLNDWDILNETNPAKKLTFDAVIANPPFSYRWEP------KEELANDFRF 342

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L    +  G  AI+L    LF   A   E +IR+ LL+
Sbjct: 343 KNYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRSGA---EEKIRKKLLK 395

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ I+ LP +LF+ T I   + +L   K ++    V  INA D +      GK++  
Sbjct: 396 DGHIDTIIGLPANLFYSTGIPVCVLVLKKCKKDD---DVLFINAADDFEK----GKRQNR 448

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEA 500
           + D+   +I+D Y  R+  + ++R +  +        + + R +       +  L     
Sbjct: 449 LTDEHIDKIVDCYQFRKEEQGYARRVSMQEIEDNGGNLNIARYVSNVVAEPEIDLTANHQ 508

Query: 501 DIT 503
           ++T
Sbjct: 509 NLT 511


>gi|254181647|ref|ZP_04888244.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 1655]
 gi|184212185|gb|EDU09228.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 1655]
          Length = 537

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 202/537 (37%), Gaps = 62/537 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTDL--EKQKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGPDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
                        L + G+ ID+  F K      +     ++    +             
Sbjct: 59  PQQIDGSVSTPLQLWYEGNLIDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAALLK 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T     SYI   SF+   + +F + + +S            ++CK    I   L   +  
Sbjct: 119 TLQRGFSYIENESFASTFRGLFSEINLASDKLGKTYVERNTRLCKIIKEIADGLKQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              + ++ D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSNLDSVMD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDP 268
             CG+G  L +  + + +             +GQE    T+ +    ML+  +   E + 
Sbjct: 239 LACGSGSLLLNVRHRMKEAKGTIG-----KIYGQEKNITTYNLARMNMLLHGVKDSEFEI 293

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +   +       +     +F   ++NPPF  +WE  +   E             GL
Sbjct: 294 FHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEALSEDVRFKN------YGL 347

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL++  I+
Sbjct: 348 APKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLLKDGHID 400

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++  I  + 
Sbjct: 401 TVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFEK----GKRQNQILPEH 453

Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI 502
             +I+D Y  R E  ++SR +           + + R +  +   ++  LA + A++
Sbjct: 454 IDKIIDTYQFRKEEARYSRRVGMEEIEKNDFNLNISRYVSTAEAEEQIDLAAVHAEL 510


>gi|312867234|ref|ZP_07727444.1| type I restriction-modification system, M subunit [Streptococcus
           parasanguinis F0405]
 gi|311097363|gb|EFQ55597.1| type I restriction-modification system, M subunit [Streptococcus
           parasanguinis F0405]
          Length = 523

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 122/537 (22%), Positives = 203/537 (37%), Gaps = 72/537 (13%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EP 50
           M    +     L   IW  A+D+ G     DF + IL     R +   +         E 
Sbjct: 1   MANKESAERKELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISEHMADYFDRAEHEA 60

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--- 107
                R   L+   +  D +         F   S+   + + + +   NL   +A+    
Sbjct: 61  GDLEFRYADLSDQEAERDFKPGTVEDKGFFILPSQLFENVVKNASQNENLNEDLANIFQD 120

Query: 108 ----------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-R 153
                      D+ K +F++ D  S I      EK   L  I    + I        D  
Sbjct: 121 IEKSAIGFKSEDDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDID 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE LI  + S   +   +F TP+ V  L   L++   D + K        +YDPT
Sbjct: 181 AFGDAYEFLISNYASNAGKSGGEFFTPQTVSKLLARLVMVGKDKINK--------VYDPT 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L        D              GQE+    + +    M +  +  +     +
Sbjct: 233 CGSGSLLLQMKKQYEDHILEDG------FFGQEINMTNYNLARMNMFLHNINYN-----N 281

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL       ++ F   +SNPP+  KW  D D            RF P   L  
Sbjct: 282 FDIKRGDTLLNPQHLDEKPFDAIVSNPPYSVKWVGDGDPTLINDD-----RFAPAGKLAP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  N L    +  GRAAIV      + G A   E  IR++L++N+ +EA+
Sbjct: 337 KSKADFAFIMHSLNHL----SNRGRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAV 389

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           +ALP +LFF T+IAT + +L+  K E    K   I+A+  +    N      ++ D    
Sbjct: 390 IALPDNLFFGTSIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNID 442

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGY---RRIKVLRPLRMSFILDKTGLARLEADIT 503
            I++++ +  +  + + ++D    G      + V   +      +K  +  L  +I 
Sbjct: 443 HIVELFTNYRSEDYKATLVDNEVIGSEQDYNLSVSTYVEQEDTREKIDIDELNQEIA 499


>gi|282850456|ref|ZP_06259835.1| type I restriction-modification system, M subunit [Veillonella
           parvula ATCC 17745]
 gi|282579949|gb|EFB85353.1| type I restriction-modification system, M subunit [Veillonella
           parvula ATCC 17745]
          Length = 533

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/522 (19%), Positives = 202/522 (38%), Gaps = 66/522 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-------- 52
           M E    A ++++ +W  A DL G    + F   ILPF   + L    E           
Sbjct: 1   MAES--KAQNISSQLWAIANDLRGTMDASSFKDYILPFLFYKYLSIHQEEYLVNSDLVDI 58

Query: 53  ---SAVREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGSTNTRN-----NLESY 103
               +V E Y             + +AG   +    E + ++L  +         + +  
Sbjct: 59  SDGKSVNEAYKELVEDAGLEACLIDIAGTLGYAINPEDTWASLTESIHNGSVIPSDYQRL 118

Query: 104 IASFSDNA----------KAIFEDFDFSSTIARLEKAGLLYK---ICKNFSGIELHPDTV 150
             +F+ NA          + IF   +   +      AG       +      IE + D  
Sbjct: 119 FENFNKNAEINKEAAADFRGIFNYINLGDSGLGSTTAGRTKTLNAVVTKIDEIE-YKDEN 177

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++  IYE+LI +F +   +   +F TP +V  +   ++     +          T+Y
Sbjct: 178 GKDILGEIYEYLIGKFAANAGKKGGEFYTPHEVSKILAKIVTGNIKSQND-----TFTVY 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPT G+G  L    N + D          +  +GQEL   T+ +    +++  +  +   
Sbjct: 233 DPTMGSGSLLLTVRNELPDGSRQG----AVSFYGQELNTVTYNLARMNLMMHGVTYNNMT 288

Query: 271 DLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             + +  +          G    + F   ++NPP+  KW+  +  + K+ +  + G+  P
Sbjct: 289 LNNADTLESDWPDGPDRDGIDRPRSFDAVVANPPYSAKWDNSESKL-KDPRFSDYGKLAP 347

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S     F++H    L    N  G  AIVL    LF G A   E +IR+ ++E + 
Sbjct: 348 A----SKADYAFILHSLYHL----NNEGTMAIVLPHGVLFRGAA---EGKIRQTIIEKNY 396

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++A++ LP +LF+ T+I T + +    +T      V  I+A++ +   +N    +  ++ 
Sbjct: 397 LDAVIGLPANLFYGTSIPTTILVFKKNRTTR---DVLFIDASNEFEKGKN----QNNLSK 449

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMS 487
           +   +I++ Y +R++  K++ +            +  P  + 
Sbjct: 450 ENITKIIETYQNRQDVDKYAHVASLEEIKENDYNLNIPRYVD 491


>gi|229002235|dbj|BAH57701.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 507

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 194/519 (37%), Gaps = 56/519 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
               +W+ A+ L G     ++  V L    L+ +  + E     +++   A      +  
Sbjct: 9   FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL 68

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            E+   V   + +     +          +     I + +++ K +         + +  
Sbjct: 69  AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK-- 126

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L  
Sbjct: 127 --EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV 184

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++                 +YDP CG+GG    +   V     H      +  +GQE  
Sbjct: 185 EMIEPYKG-----------RIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQESN 230

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF       
Sbjct: 231 PTTWKLAKMNLAIRGIDND------LGERNADTFHNDLHKGLKADYILANPPFNASDWGQ 284

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++  +   
Sbjct: 285 ERLLDD-------YRWQFGIPPKGNANYAWIEHMISKL----APNGTAGFVLANGSMST- 332

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQL 424
            +G  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ER  ++  
Sbjct: 333 -SGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILF 391

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGKFSRMLDYRTFGY 475
           I+A ++   +    +  +  +D+  +++   Y +          +   F ++ +      
Sbjct: 392 IDAREIGHMV---SRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKN 448

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +L P R   + D             R  S L + F
Sbjct: 449 NEY-ILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF 486


>gi|196037385|ref|ZP_03104696.1| type I restriction-modification system, M subunit [Bacillus cereus
           NVH0597-99]
 gi|196031627|gb|EDX70223.1| type I restriction-modification system, M subunit [Bacillus cereus
           NVH0597-99]
          Length = 526

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/534 (21%), Positives = 200/534 (37%), Gaps = 70/534 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           T      + L   IW  A+D+ G     DF + +L     R +   +         E   
Sbjct: 9   TNEGAQRSELHRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENMTAFFNQAEHEAGD 68

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
                  L+   +  D           F   S+   + + ++ T  +L   +A+      
Sbjct: 69  LEFDYAKLSDAEAEKDFRPNTVEDKGFFILPSQLFENVVKTSRTNEDLNIDLANIFKAIE 128

Query: 108 --------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                     + K +F D D +S        EK   L  I    + I+  H +       
Sbjct: 129 ASAIGFASESDIKGLFADLDTTSNRLGGIVAEKNKRLADILCGIAEIDFGHFEDNDIDAF 188

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  + S   +   +F TP+ V  L   L++D    + K        +YDPTCG
Sbjct: 189 GDAYEYLISNYASNAGKSGGEFFTPQSVSRLLARLVMDGKVKINK--------VYDPTCG 240

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L        +             +GQE+      +    M +  +  +       +
Sbjct: 241 SGSLLLQMKKQFEEHIIEDG------FYGQEINITNFNLARMNMFLHNINYN-----HFS 289

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL   +   ++ F   +SNPP+  KW    D      +     RF P   L   S
Sbjct: 290 IKRGDTLLNPMHNDEKPFDAIVSNPPYSIKWVGADDPTLINDE-----RFAPAGKLAPKS 344

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ ++ ++A
Sbjct: 345 KADFAFIMHSLSYL----SSKGRAAIVCFPGIFYRAGA---EQTIRKYLVDNNFVDCVIA 397

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L+  K E    K   I+A+  +    N      ++       I
Sbjct: 398 LPENLFFGTSIATNILVLAKNKIE---NKTLFIDASREFKKGTN----NNVLEPKNIENI 450

Query: 453 LDIYVSRENGK-FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  +  R++ + FS+++D          + V   +      +K  +  L  +I 
Sbjct: 451 VSAFRDRDDIEYFSKLVDNEKIVESEYNLSVSTYVEKEDTREKININELNREIA 504


>gi|49484057|ref|YP_041281.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242186|emb|CAG40888.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|315195725|gb|EFU26112.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 518

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL       L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 334 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 387 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  ++   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 441 TYKRKKTIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 500

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 501 IEQEINAYLKE 511


>gi|330721465|gb|EGG99515.1| Type I restriction-modification system2C DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC2047]
          Length = 550

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 206/553 (37%), Gaps = 56/553 (10%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY---SFYN 82
              +++   I     L+RL  A E  +  V + Y+  G +                +FY 
Sbjct: 1   MDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYIDKGKTEAQARELADDEDEYDKTFYI 60

Query: 83  TSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
                   +           N     I  ++ + + +    DF+  I        L  + 
Sbjct: 61  PPIARWDVIKDLKHDIGAELNKATEAIEEYNPSLEGVLVSIDFN--IKNKLSDKKLRDLL 118

Query: 138 KNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +FS   L         ++   YE+LI+ F     +   +F TP +VV L  +LL     
Sbjct: 119 SHFSQHRLRNSDFDRPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVSLL----- 173

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P     +YDPT G+GG L    N++A   SH + P  L   GQE+   T A+C 
Sbjct: 174 -----KPHAGMRIYDPTVGSGGMLVQTRNYLA---SHGENPSNLSLFGQEMNLNTWAICK 225

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAV 312
             M +  +        S +I++G TL +   T       F   ++NPPF  K        
Sbjct: 226 MNMFLHGV-------YSADIRKGDTLREPQHTQGGGLMSFDRVIANPPFSLKKWG----- 273

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           ++E      GRF  G P    G + F+ H+   L    N  G   +V+    LF    G+
Sbjct: 274 KEEADADNYGRFPYGTPPKDAGDLAFVQHMIASL----NAEGMMGVVMPHGELFR---GA 326

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  IR+ +L +DL+EA++ LP+ LF+ T I   L I++  K  +R+GKV  IN+   + 
Sbjct: 327 SEKTIRQGILNDDLLEAVIGLPSALFYGTGIPACLLIINKDKPADRKGKVLFINSELEYQ 386

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFI 489
             +N    +  +      +I+  +    E  ++S+++           + + R    S  
Sbjct: 387 EGKN----QNKLRQQDVEKIVQTFDDYGEIKRYSKVVTLADIAENDYNLNIRRYADTSPP 442

Query: 490 LDKTGL-ARLEADITWRKLSPLH-QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
            +   + A L   I  R++   + +   L+        +        F  E       + 
Sbjct: 443 PEIFDVRAILHGGIPIREVESEYIREEILEDFDVSKVFVKRDNDYFEFKPEIESKEVLRQ 502

Query: 548 LKVKASKSFIVAF 560
                    I  F
Sbjct: 503 AVGDVDSKLISQF 515


>gi|89902764|ref|YP_525235.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89347501|gb|ABD71704.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 514

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 98/537 (18%), Positives = 203/537 (37%), Gaps = 53/537 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T        L   +WK A+ L  +    ++  V+L    L+ +  + E   + ++     
Sbjct: 6   TAKPDKEEPLEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELFTKLQGGAGD 65

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
           + G++ + +   K A   F+   +   S L     +       +     I   + + K +
Sbjct: 66  YAGADPEDKDEYK-AENVFFVPPQARWSFLLGKAKQPDVGSHVDAAMDAIEKENPSLKGV 124

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173
                    +        L  +      I L         V+ +++E+ +  F     + 
Sbjct: 125 LPKVFARQNL----DPASLGGLIDLVGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQ 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR +V L   +L           P     ++DP CG+GG    +   V +   H
Sbjct: 181 GGQFYTPRSIVELLVVML----------EPYKG-RVFDPCCGSGGMFVQSEKFVTE---H 226

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQE    T  +    + IR +++   +  ++      +   D     +  
Sbjct: 227 QGRINDISIFGQESNQTTWRLAKMNLAIRGIDASQVKWNNEG-----SFLNDAHKDVKAD 281

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +   +        GR+  G+P   + +  +L H  + L       
Sbjct: 282 FIIANPPFNVSDWNGELLRKD-------GRWQYGVPPTGNANFAWLQHFNHHL----APN 330

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GRA +VL+   L +    SGE +IR+ + ++ +LI+ IV LP  LF  T I   LW ++ 
Sbjct: 331 GRAGVVLAKGALTSKS--SGEGDIRKAMVVDGNLIDCIVNLPAKLFLNTQIPAGLWFMNR 388

Query: 413 RKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            +     R+G++  I+A +L   I    ++ R ++D+  +++  +Y +   G+ S   D 
Sbjct: 389 ARNNGHPRKGEILFIDARNLGHLI---NRRTRELSDEDIQKVASVYHAWRTGE-SEYADE 444

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           + F    + + R   + ++L       L  +      +    S   ++   ++++  
Sbjct: 445 KGF-CASVPLARVAELDYVLTPGRYVGLPDEEDDFDFAERFASLKAELEAQLLEEAE 500


>gi|323490714|ref|ZP_08095916.1| type I restriction-modification system, M subunit [Planococcus
           donghaensis MPA1U2]
 gi|323395596|gb|EGA88440.1| type I restriction-modification system, M subunit [Planococcus
           donghaensis MPA1U2]
          Length = 527

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 116/557 (20%), Positives = 222/557 (39%), Gaps = 69/557 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G  +  DF   IL     R L    E   + + E+       
Sbjct: 9   QQQAELHKKLWTMANDLRGQMEAYDFKNYILGLIFYRYLSEKTEARIAKLLEEDNISYED 68

Query: 66  NIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNN--------LESYIASFSD-- 109
               E + +      +    F    E+  S++ +   +++        L   I +  +  
Sbjct: 69  AWKDEEYREGLIETLLEEIGFVIEPEFLFSSMVTEIPKSDQGKFDVELLHKAIKAIEEST 128

Query: 110 -------NAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                  + + +F+D D +ST    +   ++ L+ KI  + + I    D V   V+ + Y
Sbjct: 129 LGTDSQQDFEHLFDDMDLTSTKLGRDVKSRSKLIAKIILSINDIPFLHDDVDIDVLGDAY 188

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  
Sbjct: 189 EYLISQFAANAGKKAGEFYTPQQVSKILAKIVTHEKPDL--------KNVYDPTCGSGSL 240

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           +              K   + + +GQEL   T  +    ML+  L     R    +IQ  
Sbjct: 241 MLRVA----------KESNVRLFYGQELTTTTFNLARMNMLLHDL-----RYTDFDIQNE 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +TL        RF   ++NPP+   W  D   ++ E +  + GR  P     S     F+
Sbjct: 286 NTLENPKHVDMRFEAVVANPPYSANWSADAKYLDDE-RFSDYGRLAP----KSKADFAFV 340

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398
            H+ ++L    +  G  A+VL    LF G A   E  IR++L+E+ + ++A++ LP ++F
Sbjct: 341 QHMIHQL----DDNGTMAVVLPHGVLFRGGA---EGVIRQFLIEDKNYLDAVIGLPANVF 393

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + +    + E+    V  I+A++ +   +N    +  + D+   +I+D Y +
Sbjct: 394 FGTSIPTCVLVFKKTRKEDA--DVIFIDASNEFEKGKN----QNNLTDENVDKIVDTYKT 447

Query: 459 RE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE   ++S              +  P  +    ++  +      +   ++    +    +
Sbjct: 448 REKIERYSYAASLEEIKENDYNLNIPRYVDTFNEEELVDLEAVQVRLNEIDQEIEEIDRE 507

Query: 518 ILKPMMQQIYPYGWAES 534
           + +   +     G + S
Sbjct: 508 LEQYFKELGVGLGESTS 524


>gi|94263933|ref|ZP_01287736.1| Type I restriction-modification system M subunit [delta
           proteobacterium MLMS-1]
 gi|93455678|gb|EAT05857.1| Type I restriction-modification system M subunit [delta
           proteobacterium MLMS-1]
          Length = 868

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 112/545 (20%), Positives = 206/545 (37%), Gaps = 73/545 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + + +  +DL G    +++ + I     L+R     +  R  +R++    G S+
Sbjct: 6   TLTHLESLLLRACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRREELRQELKQKGMSD 65

Query: 67  ID----LESFVKVAGYSFYNTSEYSLSTLGS---------------------TNTRNNLE 101
            D    L+     +G  FY       +                          N    L 
Sbjct: 66  ADIAIELDDPDHYSGKYFYVPPRARWNQPWQEEVVEGGEKKTVQRPALKHVKENVGTTLN 125

Query: 102 SYIASFSDNAKAIFED----FDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVP-DRVM 155
             +A+  D      +D     +F+  I  R      L     NF  I L  D      ++
Sbjct: 126 KALAAIEDANPDALQDVLSGINFNRKIGQRTLDDDTLADFVTNFEKIPLRDDDFEFPDLL 185

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              YE LI+ F     + A +F TP +VV L   +            P    ++YDPT G
Sbjct: 186 GAAYEWLIKFFADSAGKKAGEFYTPWEVVRLCVEIC----------DPEEGMSIYDPTVG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSK 274
           +GG L    + + + G        L   GQE    T ++C   ML+  +  +D R++ + 
Sbjct: 236 SGGMLIQMRDFLREKGGDAG---ELALFGQEKIGTTWSICKMNMLLHGISHADIRQEDTL 292

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISD 333
              Q      D    +R+   ++NPPF + +      ++K+ K    GRF   +P K   
Sbjct: 293 REPQH---LDDSNELRRYDRVVANPPFSQNY------IKKDLKFS--GRFPVMMPEKGKK 341

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             ++F+ H+   L+      GR A V+    LF    G  E   R++ +++  +EA++ L
Sbjct: 342 ADLMFVQHMLAVLK----HDGRMATVMPHGVLFR---GGEERAARKYFIDHGYLEAVIGL 394

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T I   L +L+   +  R   V  INA   +     EGK +  +  +   +I+
Sbjct: 395 PGNLFYGTGIPACLLVLNKAGSANR-DHVLFINADREY----REGKAQNHLRPEDIDKII 449

Query: 454 DIYVSREN-GKFSRMLDYRTFG--YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSP 509
             +   ++   ++R +             + R +  +   +   + A L   +   ++  
Sbjct: 450 YAFRHGDDIPAYARKVPKAEIQAEEYNCNIRRYVDNAPPPEPHDVRAHLHGGVPLAEIDS 509

Query: 510 LHQSF 514
           L   +
Sbjct: 510 LSAYW 514


>gi|294619904|ref|ZP_06699280.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
 gi|291593841|gb|EFF25339.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
          Length = 531

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 110/544 (20%), Positives = 221/544 (40%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEHVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIVPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           AS  +    +F+D D  S     +   +   + ++ K  + +++        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVLEH--DGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|119715342|ref|YP_922307.1| type I restriction-modification system, M subunit [Nocardioides sp.
           JS614]
 gi|119536003|gb|ABL80620.1| type I restriction-modification system, M subunit [Nocardioides sp.
           JS614]
          Length = 519

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 115/533 (21%), Positives = 206/533 (38%), Gaps = 71/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51
           MT+       L   IW+ A DL G     DF   +L     R +   L            
Sbjct: 1   MTKEVE-RTELHRTIWRIANDLRGSVDGWDFKAYVLGMLFYRFISENLTAYLNKQERAAG 59

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------------N 99
                 ++L+   +    E  VK  G+       ++     + +  N             
Sbjct: 60  NPDFDYRHLSNADAEFGREETVKEKGFYILPQDLFANVRERARHDENLNETLARVFRNIE 119

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             S  A   ++ K +F+D D +S+       ++   L K+      + L  +        
Sbjct: 120 ASSIGADSEEDFKGLFDDLDVNSSKLGSTVAKRNEKLVKLLDAVGDLRLGHNGNTIDAFG 179

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + +       ++ TP++V  L   + +     + K        +YDP CG+
Sbjct: 180 DAYEYLMGMYAANAGRSGGEYYTPQEVSELLARIAVVGKTEVNK--------VYDPACGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +                GQE+   T+ +C   M +  +  +       +I
Sbjct: 232 GSLLLKFDKVLGHENVRQG------YFGQEINLTTYNLCRINMFLHDINYEK-----FDI 280

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+       + F   +SNPP+  KW  D D +          RF P   L   S 
Sbjct: 281 AHGDTLTDPAHWDDEPFEAIVSNPPYSTKWAGDADPLLIND-----PRFAPAGVLAPKSK 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L +     G AAIV     L+   A   E +IR++L++N+ ++ ++ L
Sbjct: 336 ADLAFTMHILSWLAV----NGTAAIVEFPGVLYRSGA---EQKIRKYLVDNNYVDTVIQL 388

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF T IAT + +L   K +    K   I+A+  +    N+ K    +    +++IL
Sbjct: 389 PPDLFFGTTIATCIIVLKKSKAD---NKTLFIDASAEFIRQGNKNK----MPAANQQRIL 441

Query: 454 DIYVSREN-GKFSRMLDY---RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           D + +RE+   F+++++       GY  + V   +   +I +   +  L A+I
Sbjct: 442 DAFSAREDVAHFAKLIENAALEANGY-NLAVSSYVEAEYIREAVDIRELNAEI 493


>gi|329736387|gb|EGG72656.1| putative type I restriction-modification system, M subunit
           [Staphylococcus epidermidis VCU045]
          Length = 498

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 194/515 (37%), Gaps = 54/515 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
               +W+ A+ L G     ++  V L    L+ +  + E     +++   A      +  
Sbjct: 6   FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL 65

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            E+   V   + ++    +          +     I + +++ K +         + +  
Sbjct: 66  AENIFWVPKEARWHYINDNAKKPEIGQLIDKAMIAIENENESLKGVLPKEYARPALDK-- 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L  
Sbjct: 124 --EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV 181

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++                 +YDP CG+GG    +   V     H      +  +GQE  
Sbjct: 182 EMIEPYKG-----------RIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQESN 227

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +    + IR +      D +   +   T   DL  G +  Y L+NPPF       
Sbjct: 228 PTTWKLAKMNLAIRGI------DNNLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ 281

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++  +   
Sbjct: 282 ERLLDD-------YRWQFGVPPKGNANYAWIEHMISKL----APNGTAGFVLANGSMST- 329

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            +G  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K  ER+ ++  I+A 
Sbjct: 330 -SGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--ERKNEILFIDAR 386

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------NGKFSRMLDYRTFGYRRIK 479
           ++   +    +  +  +D+  +++   Y S +            F ++ +          
Sbjct: 387 EIGHMV---SRTLKEFSDEDIQKVAQTYHSWKGTNDKSYEDIAGFCKIANLEEVKNNEY- 442

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +L P R   + D             R  S L + F
Sbjct: 443 ILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF 477


>gi|315158691|gb|EFU02708.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0312]
          Length = 531

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 106/544 (19%), Positives = 217/544 (39%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLYSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ---------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
                               + +D+  +     Y F   ++ +   +   N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S  +    +F+D D  S     +   +   + ++ K  + +++        V+ + YE 
Sbjct: 123 SSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVLGH--DGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       NI+ G T
Sbjct: 235 NVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNIRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|257425924|ref|ZP_05602348.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428591|ref|ZP_05604989.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431226|ref|ZP_05607603.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433907|ref|ZP_05610265.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436823|ref|ZP_05612867.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904387|ref|ZP_06312275.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282911436|ref|ZP_06319238.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914606|ref|ZP_06322392.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924952|ref|ZP_06332618.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283958567|ref|ZP_06376018.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293503683|ref|ZP_06667530.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293510700|ref|ZP_06669405.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537241|ref|ZP_06671921.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295428388|ref|ZP_06821017.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|257271618|gb|EEV03764.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275432|gb|EEV06919.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278174|gb|EEV08822.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282000|gb|EEV12137.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284174|gb|EEV14297.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313318|gb|EFB43714.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282321787|gb|EFB52112.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325131|gb|EFB55441.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282596005|gb|EFC00969.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790716|gb|EFC29533.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920086|gb|EFD97154.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095349|gb|EFE25614.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466591|gb|EFF09112.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127788|gb|EFG57425.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|312437726|gb|ADQ76797.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 579

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL       L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  ++   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKKTIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|309702143|emb|CBJ01458.1| putative type I methylase [Escherichia coli ETEC H10407]
          Length = 507

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 111/526 (21%), Positives = 204/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKIVSG 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HD----SRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  ++++   +I+  Y   +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSEENIEKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  +  + A+    K+ 
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDIRAVHAEREQLKVE 488


>gi|303230705|ref|ZP_07317452.1| type I restriction-modification system, M subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514465|gb|EFL56460.1| type I restriction-modification system, M subunit [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 531

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 215/558 (38%), Gaps = 69/558 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--------------TRSA 54
           A L   ++  A+ L G      +   +L     + L   L                T   
Sbjct: 3   AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLEATVVKAYKSLDEYNTLEK 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRN--------NLESYI 104
             E Y ++   +   E F+        ++   +Y  S L ++   N        N    +
Sbjct: 63  QTELYKSYILDDKSKEFFIATMSDTLGYHIEPQYLFSELANSVKNNSFELVHLKNAFVRL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            +     + +F+D D  S    ++   +   +  + K    I++        V+ + YE+
Sbjct: 123 ETAYTQFEGLFDDIDLDSKQLGVDANQRNITISDVIKKLDDIDVLGH--DGDVIGDAYEY 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F +   + A +F TP+ V  +   ++    ++          T+YDPT G+G  + 
Sbjct: 181 LIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQES------TPAFTVYDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   ++       K P  +  HGQEL   T+ +    +++  + SD      +N+  G T
Sbjct: 235 NVRKYL-------KNPDRVQYHGQELNVTTYNLARMNLILHEVNSD-----DQNLHNGDT 282

Query: 282 LSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD    +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPVDEPYMFDSVVMNPPYSAKWSADPTFMD----DARFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A++ +T  +N    +  +  +  ++I+D Y +R
Sbjct: 391 GTSIPTTVIILKKNRPGR---DVLFIDASNDFTKFKN----QNKLEPEHIKRIVDTYNNR 443

Query: 460 E-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +   K+S +  +         +  P  +    ++  +  +      + ++        +I
Sbjct: 444 KSIEKYSYLASFDEIKDNDFNLNIPRYVDTFEEEAPIDMVALGKEMKSINEEEVKLEKEI 503

Query: 519 LKPMMQQIYPYGWAESFV 536
              ++Q        +   
Sbjct: 504 YDMLLQLECQNDDKDWLN 521


>gi|238768521|dbj|BAH66833.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 504

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 194/519 (37%), Gaps = 56/519 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
               +W+ A+ L G     ++  V L    L+ +  + E     +++   A      +  
Sbjct: 6   FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL 65

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            E+   V   + +     +          +     I + +++ K +         + +  
Sbjct: 66  AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK-- 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L  
Sbjct: 124 --EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV 181

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++                 +YDP CG+GG    +   V     H      +  +GQE  
Sbjct: 182 EMIEPYKG-----------RIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQESN 227

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF       
Sbjct: 228 PTTWKLAKMNLAIRGIDND------LGERNADTFHNDLHKGLKADYILANPPFNASDWGQ 281

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++  +   
Sbjct: 282 ERLLDD-------YRWQFGIPPKGNANYAWIEHMISKL----APNGTAGFVLANGSMST- 329

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQL 424
            +G  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ER  ++  
Sbjct: 330 -SGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILF 388

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGKFSRMLDYRTFGY 475
           I+A ++   +    +  +  +D+  +++   Y +          +   F ++ +      
Sbjct: 389 IDAREIGHMV---SRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKN 445

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +L P R   + D             R  S L + F
Sbjct: 446 NEY-ILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF 483


>gi|21229943|ref|NP_635860.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766819|ref|YP_241581.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111454|gb|AAM39784.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572151|gb|AAY47561.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 538

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 114/548 (20%), Positives = 213/548 (38%), Gaps = 75/548 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTKDDQ--KELGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGSDY 58

Query: 60  ---------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNL-- 100
                          + +  +  D+ +F +      +     +Y    + +   + N   
Sbjct: 59  PDAKTIGNSDKTPLSVWYASNPGDVAAFEQQMRRKAHYVIKPKYLWGNIVNLAKKQNHDL 118

Query: 101 ---------ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TV 150
                         SF    + +F + + +S     +      K+C   S I      + 
Sbjct: 119 LDTLQQGFKHIEEDSFESEFQGLFSEINLASDKLGRKYDDRNAKLCSIISEIARGMALSA 178

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI +F +   + A +F TP+++ ++ +A++            G + +++
Sbjct: 179 KTDSLGDAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEPKTGPRGKLDSVF 238

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+G  L +  N + + G           +GQE    T+ +    ML+  +     +
Sbjct: 239 DFACGSGSLLLNIRNRMTNSGGSIG-----KIYGQEYNVTTYNLARMNMLLHGV-----K 288

Query: 271 DLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWE-KDKDAVEKEHKNGEL 321
           D    I  G TL  D    +        RF   ++NPPF  +WE  +  A +   KN   
Sbjct: 289 DTEFEIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQDARFKN--- 345

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                G+   S     FL+H    L+      G  AI+L    LF    G  E++IRR L
Sbjct: 346 ----HGVAPKSAADFAFLLHGLQYLK----DDGVMAIILPHGVLFR---GGKEADIRRKL 394

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA   +      GK++
Sbjct: 395 LDDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAGHFAK----GKRQ 447

Query: 442 RIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG--YRRIKVLRPLRMSFILDKTGLARL 498
             + D+  ++I++ Y +R +  ++SR +  +        + + R +  +    +  L  +
Sbjct: 448 NQLTDEHIQRIVNTYQNRNKQDRYSRCVSMKEIADKDYNLNISRYVSTAEADKEIVLEAV 507

Query: 499 EADITWRK 506
            AD+T  +
Sbjct: 508 HADLTAIE 515


>gi|297590647|ref|ZP_06949285.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus MN8]
 gi|297575533|gb|EFH94249.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus MN8]
          Length = 579

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 219/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL       L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  ++   K+S     +        + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKKTIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|329919647|ref|ZP_08276625.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners SPIN 1401G]
 gi|328937299|gb|EGG33723.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners SPIN 1401G]
          Length = 502

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 99/528 (18%), Positives = 200/528 (37%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  +A+     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L       GE EIR+ ++E+DLIE I+++P++LF+   ++  LW ++ 
Sbjct: 322 NGKIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISMPSNLFYSVTLSVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K ++ +     I+A  +   +       R  +++  +++   +   +NG       F  
Sbjct: 380 GKKQKGKT--LFIDARHMGHMVDQS---HRDFSEEDIQKLATTFEKFQNGTLENVKGFCY 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +        +   +L P R   I D+        +   R  S L + F
Sbjct: 435 VATTEDIAKQDY-ILTPGRYVGIEDQEDDGEPFDEKMTRLTSELSEMF 481


>gi|228475400|ref|ZP_04060119.1| type I restriction-modification system, M subunit [Staphylococcus
           hominis SK119]
 gi|228270583|gb|EEK12015.1| type I restriction-modification system, M subunit [Staphylococcus
           hominis SK119]
          Length = 518

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 207/550 (37%), Gaps = 67/550 (12%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58
           +TE      A L   +W  A+DL G+    +F   IL     R L   +E     +  E 
Sbjct: 3   ITEKQRQQQAELQKNLWSIADDLRGNMDANEFKNYILGMIFYRFLSEKIEEQAQILLAED 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFS 108
            + +  +  D +        F+   GY       +               +L + I +  
Sbjct: 63  NIDYETAMADEDYRPVLEQEFISRIGYVIEPQYLFGHLVKKIEKQAFEMEDLSNAIKNIE 122

Query: 109 DNAKAI---------FEDFDFSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMS 156
           ++ +           F+D D +S+      A    L+ K+    S +      +   ++ 
Sbjct: 123 NSTRGHDSEDDFIHLFDDLDLNSSRLGNSNAARTKLISKVMMKISTLPFVHSDMEIDMLG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F +   + A +F TP+ V  +   ++      +        +++YDPTCG+
Sbjct: 183 DAYEYLIGQFAASSGKKAGEFYTPQQVSTILAKIVTVNKKDI--------KSVYDPTCGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L                  +   +GQE    T+ +    ML+  +        +  I
Sbjct: 235 GSLLLRVGREA----------NVRQYYGQEYNSTTYNLARMNMLLHDVNY-----ANFKI 279

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           + G T+     + +RF   ++NPP+  KW  D   +E    +     +G  L   S    
Sbjct: 280 ENGDTIEDPAISDERFEAVVANPPYSAKWSSDPQFLE----DPRFSNYGK-LAPKSKADF 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPT 395
            F+ H+   L    +  G  A+VL    LF G A   E  IR +L+ E + ++A++ LP 
Sbjct: 335 AFIQHMIYHL----DDNGTMAVVLPHGVLFRGAA---EGVIREYLIKEKNYLDAVIGLPA 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+I T + +   +K  E    V  I+A+  +   +N    +  +  +   +I++ 
Sbjct: 388 NLFFGTSIPTSILVF--KKCREDDDNVLFIDASQSFEKGKN----QNHLTTEDVEKIVET 441

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y +RE   K+S              +  P  +    ++  +   +      ++       
Sbjct: 442 YKNRETLDKYSYAASLEEIAENDYNLNIPRYVDTFEEEEPIDLEQVQKDLNQIDDEIIEV 501

Query: 515 WLDILKPMMQ 524
             +I   + +
Sbjct: 502 EQEINNYLKE 511


>gi|257060099|ref|YP_003137987.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
 gi|256590265|gb|ACV01152.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
          Length = 522

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 117/508 (23%), Positives = 204/508 (40%), Gaps = 45/508 (8%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVR 56
             + S  SL ++IW  A  + G  +   +   ILP    +RL    +        +   R
Sbjct: 11  NNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTR 70

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKA 113
           EK       + +L  F         + + +S+    S      L  Y   IA  +   K 
Sbjct: 71  EKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKG 130

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I +  DF++TI   R      L  + +  S   L    V   ++   YE+LIR+F     
Sbjct: 131 IIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE-SG 189

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP++V  +   ++           P     +YDP CG+ G L      +A+  
Sbjct: 190 KSAGEFYTPKEVGIIMAKIM----------QPQPGMAIYDPCCGSAGLLIKCQLVLAESQ 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +GQE   +T A+    M+I  +E       S          K      +
Sbjct: 240 EKGGKYAPLQLYGQEYTGDTWAMANMNMIIHDMEGKIEIGDSFRF----PKFKQGGNLAQ 295

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELPP 350
           F   ++NP + + W       E+++   E GRF  G     S     ++ H+   L+   
Sbjct: 296 FDRVVANPMWNQNW-----FTEQDYDGDEWGRFPQGAGFPGSKADWGWVQHIWASLQP-- 348

Query: 351 NGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              G++AIVL +     G   +    E E+R+W +E D+IE ++ LP +LF+ T+    +
Sbjct: 349 --HGQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSAPGII 406

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            IL+  K+E R+ ++ LINA+  +      G  +  I+D+   +I+  +++ E   KFSR
Sbjct: 407 LILNKAKSEARKHQLLLINASLEFAK----GDPKNYISDEGINRIVTAFLNWEEQDKFSR 462

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           ++           +  P R   + +   
Sbjct: 463 IVSKEEIAKNDYNIS-PSRYIHVAEAEE 489


>gi|227892231|ref|ZP_04010036.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
 gi|227865953|gb|EEJ73374.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
          Length = 506

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 115/530 (21%), Positives = 211/530 (39%), Gaps = 61/530 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T    ++   +W+ A+ L G    +++  V+L    L+ +  + E  R  +     
Sbjct: 1   MVEKTKEL-NIERDLWQAADKLRGSMDESEYRNVVLGLIFLKYVSDSFEEKRDEILNSDY 59

Query: 61  AFGGSNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  D    E+   V   + ++  + +  T       +N    I   +++ + +   
Sbjct: 60  PEEVEEPDAYLAENIFWVPKEARWSVIQKAAKTPQVGEIIDNAMDAIEKNNNSLRGVLNK 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
              S  I +      L  +    S I L  D   D ++  +YE+ + +FGS   +   +F
Sbjct: 120 NYASPDIDK----TRLGGVVDLVSNISLKGDGKLD-LLGRVYEYFLNKFGS--GKTGGEF 172

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +V     ++                 +YDP CG+GG    +   V +   H    
Sbjct: 173 YTPQSIVKTLVEMIEPYRG-----------RIYDPCCGSGGMFVQSGKFVQE---HQGRI 218

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L  +G+E  P T  +    + IRR+      D +    QG T + DL  G+RF + L+
Sbjct: 219 GDLSIYGEESNPTTWKLAKMNLAIRRI------DNNLGQYQGDTFTNDLHKGERFDFILA 272

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K    +   E         R+  G+P + + +  ++ H+ +KL       G+A 
Sbjct: 273 NPPFNIKDWSGEKLRED-------ARWKYGVPPVGNANYAWIQHIISKL----TPDGKAG 321

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-- 415
            VL++  L    +   E  IR+ ++E+D I+AIVA+P  +F+ T I   LW +   K+  
Sbjct: 322 FVLANGALST--STKEEYAIRKAIIEDDKIDAIVAIPDKMFYTTGIPASLWFIDMDKSSD 379

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---------RENGKF 464
              +R G+   I+A +L   +    +  R  +D+  ++I D Y +         ++   F
Sbjct: 380 DERKRNGETLFIDARELGEML---DRTHRGFSDEDIKKIADTYHAYRGTNDKEYKDIAGF 436

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            ++            VL P R   + +K            R  + L + F
Sbjct: 437 CKVAKIEDIAKNDY-VLTPGRYVGLAEKEDDGEPYEVKMERLTNELKEQF 485


>gi|157164462|ref|YP_001466969.1| type I restriction-modification system, M subunit [Campylobacter
           concisus 13826]
 gi|112800937|gb|EAT98281.1| type I restriction-modification system, M subunit [Campylobacter
           concisus 13826]
          Length = 517

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 118/531 (22%), Positives = 202/531 (38%), Gaps = 68/531 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M+E     A L N IW  A ++ G     DF + +L     R +         A  +   
Sbjct: 1   MSEEAQRRA-LQNQIWSIANEVRGAVDGWDFKQYVLGTLFYRFISENFTDYIEAGDDSID 59

Query: 59  YLAFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y + G   ID E     ++  GY  Y  S+   + + + +   NL + +           
Sbjct: 60  YASMGDDEIDDEQKKVIIEEKGYFIY-PSQLFKNVVKNASNNANLNTDLDQIFKSIEGSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNI 158
                  + K +F DFD +S        +K   L  +    +G++          +  + 
Sbjct: 119 AGFESEQDIKGLFADFDTTSNRLGNSVADKNRRLAAVLNGVAGLDFGDFKDNHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP++V  L + L +   +++ K        +YDP CG+G 
Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQNVSKLISELAMHGQESVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A                    GQE+   T  +    M +  +          +I+ 
Sbjct: 231 LLLQAKKRFDKHEVEQG------FFGQEINHTTFNLARMNMFLHNINYSK-----FHIEL 279

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL        + F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLLDPKLQDDKPFDAIVSNPPYSINWIGSDDPTLIND-----ARFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+MH  + L    +  GRAAIV      + G A   E +IR +L++ + +E I+AL  
Sbjct: 335 FAFIMHALSYL----SAKGRAAIVSFPGIFYRGGA---EKKIREYLVKENFVETIIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K+E    K Q I+A++ +    N      ++  +  ++I++I
Sbjct: 388 NLFYGTSIAVNILVLSKHKSE---NKTQFIDASEFFEKRTN----NNVLTSEHIKKIVEI 440

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           + S+E     +  +D  T         V   +      +K  +  L   I 
Sbjct: 441 FASKEEIAHVATSVDNDTIAQNDYNLAVSSYVEPKDTREKIDINELNLQIK 491


>gi|237756252|ref|ZP_04584812.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691589|gb|EEP60637.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 507

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 107/500 (21%), Positives = 208/500 (41%), Gaps = 37/500 (7%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L N++W+ A  + G  +   +   ILP   L+RL    +   S +  ++ +   +   +
Sbjct: 7   TLENWLWEAASAIRGAVEANKYKDYILPLIFLKRLSDVFDDEISRLESEFGSRERALKIV 66

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTI-- 124
           E    +  +     + +      S      L      +A  +   + +    DF++++  
Sbjct: 67  EMDHSIVRFYIPEKARWKNIKAQSVRIGEYLTDAVREVAKENPKLEGVINIVDFNASVSG 126

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            R+     L ++    S   L  + V   ++   YE+L+R+F     + A +F TP++V 
Sbjct: 127 QRIIDDDRLKELINILSRHRLGLNDVEPDILGRAYEYLLRKFAEGSGQSAGEFYTPKEVG 186

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L           P     +YDP CG+GG L        +     K    L   G
Sbjct: 187 ILMAKIL----------DPKEGDEVYDPCCGSGGLLIKCYLRFKEKYQDKKDAIPLRFFG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+   T+A+      I  +E +    L  +++  +    D  + K+F    +NP + + 
Sbjct: 237 QEINHTTYAMAKMNAFIHDME-NTEIALGDSMRNPAFKESDG-SLKKFDVITANPMWNQN 294

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +       E+ +KN    RF  G+P  S     ++ H+   L       G+ A+VL +  
Sbjct: 295 FS------EEVYKNDPYKRFEFGIPPSSSADWGWIQHMYASLR----ENGKIAVVLDTGS 344

Query: 365 LFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +  G    G   E +IR+  ++NDLIEA++ LP +LF+ T     + +++  K  E + +
Sbjct: 345 VSRGSGNVGSNKERDIRKKFVDNDLIEAVILLPENLFYNTTAPGVIIVINKNK--EHKDQ 402

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKV 480
           + LINA+ L+   R + +    + D+  RQ+ +IY + E     S+++           +
Sbjct: 403 ILLINASSLYEKERPKNR----LTDEGIRQVYEIYKNWEEREGLSKIVSKEEVARNDYNL 458

Query: 481 LRPLRMSFILDKTGLARLEA 500
                ++   ++  L   EA
Sbjct: 459 SPSRYVAINGEEEILDLNEA 478


>gi|116329325|ref|YP_799045.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116122069|gb|ABJ80112.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 513

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 208/539 (38%), Gaps = 68/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW+ A D+ G     DF + +L     R +        E   S++ 
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSID 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+   + +   +   +L + +A+          
Sbjct: 60  YAKLPDKRITREIKDDAIKTRGYFIYPSQLFANVVSKADDNESLNTDLAAIFKAIETSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    D+    +  + Y
Sbjct: 120 GFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAIHKQTRINK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL       ++ F   +SNPP+   W+   D      +     RF P   L   S    
Sbjct: 281 NTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLDPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D    QI+  +
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---NTQFIDASGLFKKETNT----NILTDKHIEQIMQTF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPL 510
            S+ +   F++ +             V   +      +   + +L A++  T +K+  L
Sbjct: 442 DSKIDKEHFAKSVSMEAIAKNEYNLSVSSYVEAKDNREVIDIQKLNAELKTTVKKIDQL 500


>gi|69245865|ref|ZP_00603682.1| Type I restriction-modification system M subunit [Enterococcus
           faecium DO]
 gi|257879183|ref|ZP_05658836.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,230,933]
 gi|257881998|ref|ZP_05661651.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,502]
 gi|257890013|ref|ZP_05669666.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,410]
 gi|260560170|ref|ZP_05832347.1| type I restriction-modification system M subunit [Enterococcus
           faecium C68]
 gi|293560248|ref|ZP_06676747.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1162]
 gi|294620836|ref|ZP_06700040.1| type I restriction-modification system, M subunit [Enterococcus
           faecium U0317]
 gi|314947719|ref|ZP_07851126.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
 gi|68195567|gb|EAN10009.1| Type I restriction-modification system M subunit [Enterococcus
           faecium DO]
 gi|257813411|gb|EEV42169.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,230,933]
 gi|257817656|gb|EEV44984.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,502]
 gi|257826373|gb|EEV52999.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,410]
 gi|260073737|gb|EEW62062.1| type I restriction-modification system M subunit [Enterococcus
           faecium C68]
 gi|291599621|gb|EFF30634.1| type I restriction-modification system, M subunit [Enterococcus
           faecium U0317]
 gi|291605792|gb|EFF35227.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1162]
 gi|313645699|gb|EFS10279.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
          Length = 530

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 110/542 (20%), Positives = 219/542 (40%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++
Sbjct: 393 SIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKD 445

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ + ++         +  P  +    ++  +  +      +K+    Q    ++L+
Sbjct: 446 VEKYAHLANFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|257900171|ref|ZP_05679824.1| type I restriction-modification system M subunit [Enterococcus
           faecium Com15]
 gi|293379346|ref|ZP_06625491.1| type I restriction-modification system, M subunit [Enterococcus
           faecium PC4.1]
 gi|257838083|gb|EEV63157.1| type I restriction-modification system M subunit [Enterococcus
           faecium Com15]
 gi|292642038|gb|EFF60203.1| type I restriction-modification system, M subunit [Enterococcus
           faecium PC4.1]
          Length = 531

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 110/542 (20%), Positives = 218/542 (40%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++
Sbjct: 393 SIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKD 445

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +  +      +K+    Q    ++L+
Sbjct: 446 VEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|218247023|ref|YP_002372394.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218167501|gb|ACK66238.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 522

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 118/508 (23%), Positives = 205/508 (40%), Gaps = 45/508 (8%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVR 56
             + S  SL ++IW  A  + G  +   +   ILP    +RL    +        +   R
Sbjct: 11  NNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTR 70

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKA 113
           EK       + +L  F         + + +S+    S      L  Y   IA  +   K 
Sbjct: 71  EKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKG 130

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I +  DF++TI   R      L  + +  S   L    V   ++   YE+LIR+F     
Sbjct: 131 IIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE-SG 189

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP++V  +   ++           P     +YDP CG+ G L      +A+  
Sbjct: 190 KSAGEFYTPKEVGIIMAKIM----------QPQPGMAIYDPCCGSAGLLIKCQLVLAESQ 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +    L  +GQE   +T A+    M+I  +E       S          K      +
Sbjct: 240 EKGEKYAPLQLYGQEYTGDTWAMANMNMIIHDMEGKIEIGDSFRF----PKFKQGGNLAQ 295

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELPP 350
           F   ++NP + + W       E+++   E GRF  G     S     ++ H+   L+L  
Sbjct: 296 FDRVVANPMWNQNW-----FTEQDYDGDEWGRFPQGAGFPGSKADWGWVQHIWASLQL-- 348

Query: 351 NGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              G++AIVL +     G   +    E E+R+W +E D+IE ++ LP +LF+ T+    +
Sbjct: 349 --HGQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSAPGII 406

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            IL+  K+E R+ ++ LINA+  +      G  +  I+D    +I+  +++ E   KFSR
Sbjct: 407 LILNKAKSEARKHQLLLINASLEFAK----GDPKNYISDQGINRIVTAFLNWEEQDKFSR 462

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           ++           +  P R   + +   
Sbjct: 463 IVSLEEIAKNDYNIS-PSRYIHVTEAEE 489


>gi|312952954|ref|ZP_07771810.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0102]
 gi|310629095|gb|EFQ12378.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0102]
          Length = 531

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 110/542 (20%), Positives = 218/542 (40%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTILYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++
Sbjct: 393 SIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKD 445

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +  +      +K+    Q    ++L+
Sbjct: 446 VEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|163790646|ref|ZP_02185074.1| type I restriction-modification system methyltransferase subunit
           [Carnobacterium sp. AT7]
 gi|159874094|gb|EDP68170.1| type I restriction-modification system methyltransferase subunit
           [Carnobacterium sp. AT7]
          Length = 540

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 122/572 (21%), Positives = 222/572 (38%), Gaps = 67/572 (11%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58
           MTE    S+ +L   +W +A+ L       ++   +L     + L   +    S + E+ 
Sbjct: 1   MTEKIEKSSTTLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-------- 100
                     Y+     +   E  ++     F  T E  L+     N  ++         
Sbjct: 61  TEDLQVAQKLYVEACEDSAIKEDLLEELQDEFSYTIEPQLTFTAQVNAIHDGSFQLEDLV 120

Query: 101 --ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSN 157
                I   S+  + +FED D  S    +        I      +  L+       V+ +
Sbjct: 121 QGFRDIEQSSEIFENLFEDIDLYSKKLGVSPQKQNKTIADVMKELSVLNMAGHAGDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP+ V  L T ++L   +           ++YDPT G+G
Sbjct: 181 AYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKEN------QKGFSVYDPTMGSG 234

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +A  +  + G+       +   GQEL   T+ +    M++  + +      ++++ 
Sbjct: 235 SLLLNAKKYSNEPGT-------ISYFGQELNTSTYNLARMNMILHGVST-----ANQDLH 282

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              TL +D  T +   F   L NPP+   W  DK  +E    +     +G  L   S   
Sbjct: 283 NADTLDQDWPTEEPTNFDAVLMNPPYSANWSADKGFLE----DVRFSTYGV-LAPKSKAD 337

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G  AIVL    LF    G GE +IR+ LLEN  I+ ++ LP 
Sbjct: 338 FAFLLHGYYHLK----DSGVMAIVLPHGVLFR---GGGEGKIRKVLLENGAIDTVIGLPA 390

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T+I T + IL   ++ +    V  I+A+  +   +N    +  + D+    IL  
Sbjct: 391 NIFFNTSIPTTVIILKKNRSTK---DVLFIDASQGFEKSKN----QNTLTDEHIDTILKA 443

Query: 456 YVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRK--LSPL 510
           +  REN  K++ + ++         + + R +      ++  L  +   I   K  L+  
Sbjct: 444 HSKRENKEKYAYVAEFEEIVENDYNLNIPRYVDTFEEEEEISLETISTTIQQTKKDLTHA 503

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
               +  + +            + F+ + +  
Sbjct: 504 EDELFGMLNELHGTTEEDDKKLKGFISQLMND 535


>gi|320526800|ref|ZP_08027990.1| putative type I restriction-modification system, M subunit
           [Solobacterium moorei F0204]
 gi|320132768|gb|EFW25308.1| putative type I restriction-modification system, M subunit
           [Solobacterium moorei F0204]
          Length = 510

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 115/532 (21%), Positives = 197/532 (37%), Gaps = 67/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MVSKNNTNIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFERRYDELLKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         FY   E   S + S      + + I    DNA    E  + 
Sbjct: 59  ---GEGFENDRDAYAEENIFYVPEEARWSKIASAAHTPEIGAVI----DNAMRSIEKEN- 110

Query: 121 SSTIARLEKAGLLYK--------ICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           +S    L K              +   F + I++    +   ++   YE+ I +F +   
Sbjct: 111 TSLKNVLPKNYASPDLDKRVLGEVVDLFTNEIKMDGTELSKDLLGRTYEYCIAQFAAYEG 170

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V    A+L           P     +YDP CG+GG    +   V    
Sbjct: 171 AKGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHS 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +  I   +  +GQE   +T  +    M IR +++      +       T   D+    +
Sbjct: 221 DNRGI---ISVYGQESNADTWKMAKMNMAIRGIDA------NFGSYHADTFFNDIHKTLK 271

Query: 292 FHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
             + ++NPPF    W  DK  V+         R+  G+P   + +  ++ H+   L    
Sbjct: 272 SDFIMANPPFNLSNWGADKLKVD--------PRWKYGVPPSGNANYAWIQHMIYHL---- 319

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+  +VL++  L +    SGE EIR+ ++E+DLIE IVALPT LF+   I   LW +
Sbjct: 320 APNGKIGLVLANGALSSQS--SGEGEIRKKIIEDDLIEGIVALPTQLFYSVTIPVTLWFI 377

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENG--- 462
           S  K  +++GK   I+A  +   +  + +       +         +   +   +NG   
Sbjct: 378 SRNK--KQKGKTLFIDARKMGYMVDRKHRDFTEGIQEDGSLGDIDLLAKTFEDFQNGVLK 435

Query: 463 ---KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
               FS +        +   +L P R   I ++        +   R  S L 
Sbjct: 436 EKKGFSAIATIEDIAKQDY-ILTPGRYVGIEEQKDDGEPFGEKMTRLTSELS 486


>gi|124002924|ref|ZP_01687775.1| type I restriction-modification system, M subunit [Microscilla
           marina ATCC 23134]
 gi|123991574|gb|EAY30982.1| type I restriction-modification system, M subunit [Microscilla
           marina ATCC 23134]
          Length = 538

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 115/540 (21%), Positives = 206/540 (38%), Gaps = 64/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---------- 50
           MT+       L + +WK A++L G      F   +L F  L+ L    E           
Sbjct: 1   MTQQ-EQHNQLGSTLWKIADELRGAMNADSFRDYMLSFLFLKYLSSNYEEAAKRELGSDY 59

Query: 51  --------TRSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLST---LG 92
                   TR+ +   Y A      + E+       +V    Y + + SE + S    L 
Sbjct: 60  PKLDGEEDTRTPLSIWYAANADDVPEFEAQMRKKVHYVIEPIYLWKSISELARSQHEDLL 119

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTV 150
            T           SF    + +F +    S            ++C   S I   +   + 
Sbjct: 120 KTLKEGFKYIENESFESAFQGLFSEIHLDSEKLGKNTTERNKRLCTIVSKISAGIAEFST 179

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI +F +   + A +F TP+ +  + + ++              +  + 
Sbjct: 180 DSDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISGILSEIVTLDCQNPAAGKKKKLEHVL 239

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESD 267
           D  CG+G  L +    +   G           +GQE    T+ +    ML+  +   E D
Sbjct: 240 DFACGSGSLLLNVRKRMVQAGGSTG-----KIYGQEKNVTTYNLARMNMLLHGMKDTEFD 294

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +   Q G     +     +F   ++NPPF  +W+   D  E      +    G G
Sbjct: 295 IFHGDTLLNQWGVLNEMNPAKKPKFDAIVANPPFSLRWDSSSDLAE------DFRFRGYG 348

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L    +  G   I+L    LF G A   E  IR  LL+++ I
Sbjct: 349 LAPKSAADFAFLLHGFHYL----SDNGTMTIILPHGVLFRGGA---EERIRTKLLKDNHI 401

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP++LF+ T I   + +L       R   V  INA++ +    ++GK++  +N+D
Sbjct: 402 DTVIGLPSNLFYSTGIPVCILVLKKC---TRANDVLFINASEHF----DKGKRQNALNED 454

Query: 448 QRRQILDIYVSR-ENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
              +I+D Y  R E  ++S+ +   +    GY  + + R +  +    K  L  + A++ 
Sbjct: 455 HIAKIIDTYQHRKEEERYSQRVTMAEIEEQGY-NLNITRYVSTAKPEPKVDLKEVNAELR 513


>gi|300837084|ref|YP_003754138.1| type I restriction-modification system M subunit [Klebsiella
           pneumoniae]
 gi|299474888|gb|ADJ18712.1| type I restriction-modification system M subunit [Klebsiella
           pneumoniae]
          Length = 507

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/526 (21%), Positives = 205/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKKQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G +L+  P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGQDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKIVSG 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HD----SRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  ++++  ++I+  Y   +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSEENIKKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  L  + A+    K  
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAE 488


>gi|295091335|emb|CBK77442.1| type I restriction system adenine methylase (hsdM) [Clostridium cf.
           saccharolyticum K10]
          Length = 520

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 122/555 (21%), Positives = 206/555 (37%), Gaps = 73/555 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSA 54
           T+       L   IW  A++L G     DF   +L     R +   L       E     
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYINSGEAAAGN 63

Query: 55  VREKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105
               +      + +   +  V+  G+ F   SE   +   +     NL   +        
Sbjct: 64  SDFDFAKMPDEDAEEARDGLVEEKGF-FILPSELFCNVRANAANDENLNETLERVFRHIE 122

Query: 106 ------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR---VM 155
                    ++   +F+D+D +S       A    K+ K  +G+ E+    V D      
Sbjct: 123 ESAKGSEAENDFAGLFDDYDVNSNKLGSTVAKRNEKLAKLLNGVGEMKLGDVKDHSIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG
Sbjct: 183 GDAYEYLMMMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A   +      +        +GQE+   T+ +C   M +  +  D       N
Sbjct: 235 SGSLLLKAEKILGRDAIRNG------FYGQEINITTYNLCRINMFLHDVGFDK-----FN 283

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I    TL        + F   +SNPP+  KW  D + +          RF P   L   S
Sbjct: 284 IACEDTLISPQHWDDEPFELIVSNPPYSIKWVGDDNPLLIND-----PRFAPAGVLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              M F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ 
Sbjct: 339 KADMAFIMHSLSWL----ASNGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCIIQ 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP++LFF T+IAT + ++   K +    K   I+AT     + N       +  +    I
Sbjct: 392 LPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATRECVKVTN----NNKLTPENIDHI 444

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +D +  RE    F  +  Y           V   +      +K  + +L A+I  +++  
Sbjct: 445 VDAFAKREEVEHFVHLASYDEVSGNDYNLSVSTYVEAEDTREKIDIVKLNAEI--KEIVA 502

Query: 510 LHQSFWLDILKPMMQ 524
             Q    ++ K + +
Sbjct: 503 REQMLRDELDKIIAE 517


>gi|220908526|ref|YP_002483837.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
 gi|219865137|gb|ACL45476.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
          Length = 540

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 177/484 (36%), Gaps = 62/484 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
               +  SL   +WK A+ L  +    ++  ++L    L+ +  A +   + +      +
Sbjct: 7   NDKHNNESLEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEY 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDF 118
            G++ +     K A   F+   +   S L            ++  + +       + +  
Sbjct: 67  AGADPEDPDEYK-AENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGI 125

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------------------RVMSNIYE 160
                  +      L  +        L                          ++  +YE
Sbjct: 126 LPKVYGQQKLDPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLGQVYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + +F     +    F TP  VV +   +L           P     ++DP CG+GG  
Sbjct: 186 YFLGQFALAEGKKGGQFYTPESVVKVLVEML----------EPYKG-RVFDPCCGSGGMF 234

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             +   V+    H      +  +GQE    T+ +C   + IR ++    R   +      
Sbjct: 235 VQSEKFVSH---HQGRLNDISIYGQESNETTYKLCRMNLAIRGIDGSNIRWNPEG----- 286

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +  KD     +  + ++NPPF           +        GR+  G+P + + +  ++ 
Sbjct: 287 SFLKDAHKDLKADFVIANPPFNDSDWGGDLLRQD-------GRWQYGVPPVGNANFAWVQ 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L L     G A  VLS+  L      SGE EIR+ L++ DL++ IV LPT LF+ 
Sbjct: 340 HFLYHLAL----TGAAGFVLSNGSL--SSNTSGEGEIRKALVQADLVDCIVMLPTQLFYN 393

Query: 401 TNIATYLWILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           T I   LW LS      K  +R+G+V  I+A++L   +    ++ R   ++  ++I   Y
Sbjct: 394 TGIPACLWFLSRYKNGNKNRDRKGEVLFIDASELGYMV---NRRNRAFAEEDIQKIAGTY 450

Query: 457 VSRE 460
              +
Sbjct: 451 HEWK 454


>gi|116330071|ref|YP_799789.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116123760|gb|ABJ75031.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 208/539 (38%), Gaps = 68/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW+ A D+ G     DF + +L     R +        E   S++ 
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSID 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+   + +   +   +L + +A+          
Sbjct: 60  YAKLPDKRITREIKDDAIKTRGYFIYPSQLFANVVSKADDNESLNTDLAAIFKAIETSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    D+    +  + Y
Sbjct: 120 GFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIAQLAIHKQTRINK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FSGQEINHTTYNLARMNMFLHNINYDK-----FDIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL       ++ F   +SNPP+   W+   D      +     RF P   L   S    
Sbjct: 281 NTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLDPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D    QI+  +
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---NTQFIDASGLFKKETNT----NILTDKHIEQIMQTF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPL 510
            S+ +   F++ +             V   +      +   + +L A++  T +K+  L
Sbjct: 442 DSKIDKEHFAKSVSMEAIAKNEYNLSVSSYVEAKDNREVIDIQKLNAELKTTVKKIDQL 500


>gi|298292626|ref|YP_003694565.1| type I restriction-modification system, M subunit [Starkeya novella
           DSM 506]
 gi|296929137|gb|ADH89946.1| type I restriction-modification system, M subunit [Starkeya novella
           DSM 506]
          Length = 505

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 108/521 (20%), Positives = 196/521 (37%), Gaps = 51/521 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
               +   +   +W   +   G      +   IL    L+ +           R+++   
Sbjct: 2   NDHLTQQQVNQTVWAACDTFRGVVDAGQYKDYILVMLFLKYISDHWNDHLEIYRKQFGGD 61

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                  ++ E FV   G SFY+  E              LE    +     + +F + D
Sbjct: 62  ETRIRRRLERERFVLPEGASFYDLYEARNEPNIGELINIALERIEDANRTKLEGVFRNID 121

Query: 120 FSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A
Sbjct: 122 FNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  V  L   L           +P    T+ DP CG+G  L  A   V       
Sbjct: 182 GEFYTPSAVSRLLAKLA----------APKPGDTICDPACGSGSLLIRAAEEVGSEN--- 228

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +GQE+   T A+    M +   ++     +       S    +     +F  
Sbjct: 229 -----FALYGQEVNGATWALARMNMFLHAKDA---ARIEWCDTLNSPALVEGDHLMKFDV 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF       + A        +  R+  G+P  S G   F+ H+    E+     G
Sbjct: 281 VVANPPFSLDKWGAESA-----DTDQFKRYWRGIPPKSKGDYGFITHMI---EIAKRLSG 332

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + +    +
Sbjct: 333 RVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDRSR 389

Query: 415 TE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
            +    E R  V  I+A   +T     GK + ++++    ++L+ Y +R E  K+S    
Sbjct: 390 EQGGVNEDRRDVLFIDAGKEFTP----GKTQNVMDEAHISKVLETYAARSEIEKYSHRAS 445

Query: 470 YRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                     + + R +      ++  +A L+  I   +  
Sbjct: 446 PEEIAENDFNLNIPRYVDTFEPEEEIDVAALQKQINIIEAE 486


>gi|261491601|ref|ZP_05988184.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494961|ref|ZP_05991430.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309370|gb|EEY10604.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312727|gb|EEY13847.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 515

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/526 (23%), Positives = 203/526 (38%), Gaps = 66/526 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E   Y A+ 
Sbjct: 5   QQRAELHRQIWQIANEVRGAVDGWDFKQYVLGSLFYRFISENFSAYIEQGDESIDYAAYS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEY----------SLSTLGSTNTRNNLESYIASF-- 107
              ID     E  +K  GY  Y +  +          +   +   +   ++E+    F  
Sbjct: 65  DEEIDAFGIKEDAIKSKGYFIYPSQLFKNVVKNANTNNNLNIELADIFADIEASAVGFDS 124

Query: 108 SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLI 163
             + K +F DFD  S        +K   L  + K    +           +  + YE+LI
Sbjct: 125 EKDIKGLFADFDTKSNRLGNTVEDKNKRLAAVLKGVESLNFGDFAENQIDLFGDAYEYLI 184

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  A
Sbjct: 185 SNYASNAGKSGGEFFTPQNVSKLIAQLALYGQSAVNK--------IYDPACGSGSLLLQA 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D              GQE+   T+ +    M +  +  D       +I+ G TL 
Sbjct: 237 KKQFDDHLIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FHIELGDTLI 285

Query: 284 KDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                  + F   +SNPP+  KW    D      +     RF P   L   S     F++
Sbjct: 286 NPKLKDDKPFDAIVSNPPYSIKWIGSDDPTLINDE-----RFAPAGILAPKSKADFAFIL 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  N L    +  GRAAIV      +   A   E +IR++L+E +++E+++AL  +LF+ 
Sbjct: 341 HALNYL----SAKGRAAIVTFPGIFYRSGA---EQKIRQYLIEQNVVESVIALSANLFYG 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +LS  KT+    K Q I+A+DL+    N      ++ D+   QIL ++  + 
Sbjct: 394 TSIATNILVLSKHKTDT---KTQFIDASDLFKKETN----NNVLTDEHIAQILKLFADKA 446

Query: 461 N-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           +   F++ +D R          V   +      +   +  L  +I 
Sbjct: 447 DVEHFAKSVDNRQIAENEYNLAVSSYVEAKDTREVINITELNKEIR 492


>gi|84386436|ref|ZP_00989464.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus
           12B01]
 gi|84378860|gb|EAP95715.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus
           12B01]
          Length = 521

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/536 (22%), Positives = 208/536 (38%), Gaps = 75/536 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  +     L N IWK A ++ G     DF + +L     R +                
Sbjct: 1   MT-SSQQRKDLHNQIWKIANEVRGSVDGWDFKQYVLGALFYRFISENFTNYIEGGDSSIN 59

Query: 59  YLAFGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y  F      +E      +K  GY  Y  SE   + +   +  +NL + +A         
Sbjct: 60  YAGFDDEAPQIELIKDDAIKTKGYFIY-PSELFCNVVKKASKNDNLNTDLAKVFSAIESS 118

Query: 108 ------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                  ++ K +F DFD +S       +EK   L+ + K    ++L         +  +
Sbjct: 119 ANGYASEEDIKGLFADFDTTSNRLGNTVIEKNTRLFAVLKGVEDLKLGDFQDNQIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI ++ +   +   +F TP+ V +L   L +   D + K        +YDP  G+G
Sbjct: 179 AYEFLISKYAANAGKSGGEFFTPQTVSNLIAKLAMHKQDKVNK--------IYDPAAGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H  +              GQE+   T+ +    M +  +  D       +I 
Sbjct: 231 SLLLQAKKHFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIA 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL+   F  ++ F   +SNPP+  KW    D      +     RF P   L   S  
Sbjct: 280 LGNTLTNPHFGDEKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGILAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +  GRAAIV      +   A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALNYL----SPKGRAAIVCFPGIFYRSGA---EKKIRKYLVDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K E     VQ I+A+       N+     ++  +   +I++
Sbjct: 388 PNLFYGTSIAVNILVLSKSKKE---NTVQFIDAS--GEGFFNKVGNNNVLTSEHIDKIME 442

Query: 455 IYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            + S++N +        S + D        + V   +      +   +  L  ++ 
Sbjct: 443 TFDSKQNIEHVAESIDLSDIEDNE----YNLSVSAYVEPKDTREVVDITELNKELK 494


>gi|45656820|ref|YP_000906.1| type I restriction enzyme [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600056|gb|AAS69543.1| type I restriction enzyme [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 513

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 206/539 (38%), Gaps = 68/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW+ A D+ G     DF + +L     R +        E   S+++
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+   + +   +    L + +A           
Sbjct: 60  YSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVTKADKNERLNTDLAGIFKDIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    D+    +  + Y
Sbjct: 120 GFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL       ++ F   +SNPP+   W+   D      +     RF P   L   S    
Sbjct: 281 NTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      +   A   E +IR++L+ N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRSGA---EQKIRQYLVGNNFVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ +D   +I+  +
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---NTQFIDASGLFKKETN----NNILTEDHIERIMQTF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEAD--ITWRKLSPL 510
            S+ +   F++ +   T         V   +      +   + +L A+  IT  K+  L
Sbjct: 442 DSKVDTEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKITVEKIDQL 500


>gi|76787763|ref|YP_330354.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae A909]
 gi|77406552|ref|ZP_00783602.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae H36B]
 gi|77411600|ref|ZP_00787941.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae CJB111]
 gi|76562820|gb|ABA45404.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae A909]
 gi|77162317|gb|EAO73287.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae CJB111]
 gi|77174830|gb|EAO77649.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae H36B]
          Length = 526

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/568 (20%), Positives = 209/568 (36%), Gaps = 69/568 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E   S   L   +W +A+ L G     D+   +L     + L   L        E++ 
Sbjct: 1   MAEKITS---LRQALWNSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEEHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+   ++  +    V G   Y      +   L      N         
Sbjct: 58  NTFTDTQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +F+D D  S        ++   +  + K  + I+   ++V    + 
Sbjct: 118 GFRDIEQSGEDFENLFKDIDLYSKKLGSTPQKQNQTIANVMKTLNEIDF--ESVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP   +
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFSGRED------QKGMTLYDPAMES 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQE+   T+ +    M++  +        ++++
Sbjct: 230 GTLLLNAKKYSHQS-------DTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHL 277

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL  D  T +   F   L NPP+  KW      +     +     +G  L   S  
Sbjct: 278 SNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFL----TDPRFSSYGV-LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ LP
Sbjct: 333 DFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   ++ILD
Sbjct: 386 SNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDKGKN----QNTMTDAHIKKILD 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SR+N  KFS +  +         +  P  +    +       E       +      
Sbjct: 439 AYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFEEVPVKPLPELAKQLNDIDQEIAK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIK 541
               + + M + +     A+  +    K
Sbjct: 499 TNAKLDQLMKRLVGTTKEAQDELDAFRK 526


>gi|93006185|ref|YP_580622.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92393863|gb|ABE75138.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 529

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 179/474 (37%), Gaps = 60/474 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             +    +W  A  L G  + +++  ++L    L+ +    E  R  + +       + +
Sbjct: 14  NGNFEEALWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHINMV 73

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDF 120
                       FY   E   S +     + ++        S I   + + K    D  F
Sbjct: 74  Q----AYTKDNVFYLPEESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYF 129

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S       K   L  +  N   I        +  +  +YE+ + +F +   +G  +F TP
Sbjct: 130 SRLGLTASKLAALIDVVNNIDTI----GNPEEDTVGRVYEYFLGKFAATEGKGGGEFYTP 185

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV+L   ++                 +YDP CG+GG    ++  +    SHH     +
Sbjct: 186 KSVVNLIAEMVEPYQG-----------KIYDPCCGSGGMFVQSIKFIE---SHHGNTKDV 231

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE    T+ +    + IR + S      +       T  KD     +  + ++NPP
Sbjct: 232 SIYGQEYTSTTYKLAKMNLAIRGISS------NLGDVAADTFFKDQHEDLKADFIMANPP 285

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F +K  +  D +  + +       G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 286 FNQKDWRASDELVDDPRWA-----GYPTPPTGNANYAWILHMISKL----SEHGTAGFVL 336

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  +      SGE EIR  +++NDL++ ++ALP  LF+ T I   LW +S  K      
Sbjct: 337 ANGSMST--TTSGEGEIREQIIKNDLVDCMIALPGQLFYTTQIPVCLWFISKDKQATSAD 394

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                   R G+   I+A ++   I    +  +  + D    I   Y +    K
Sbjct: 395 SKAKGLRNRSGETLFIDARNIGAMI---DRTHKEFSTDDIEAIAKTYHAWRGEK 445


>gi|282906211|ref|ZP_06314066.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282331503|gb|EFB61017.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
          Length = 579

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/551 (22%), Positives = 218/551 (39%), Gaps = 73/551 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL       L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 340 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKAD 394

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 395 FAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLP 447

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D
Sbjct: 448 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIID 501

Query: 455 IYVSRENGK---FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            Y  ++      +S  L         + + R +          L +++ D+    ++++ 
Sbjct: 502 TYKRKKTIDKYSYSATLQEIDDNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAE 561

Query: 510 LHQSFWLDILK 520
           + Q     + +
Sbjct: 562 IEQEINAYLKE 572


>gi|89890210|ref|ZP_01201720.1| type I restriction-modification system methyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517125|gb|EAS19782.1| type I restriction-modification system methyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 551

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/570 (19%), Positives = 209/570 (36%), Gaps = 94/570 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KY 59
           M+E       L   +W  A DL G+    DF   IL F   + L   +E   + + +   
Sbjct: 1   MSEEEKQQI-LKQTLWNIANDLRGNMDADDFRDYILGFIFYKYLSRKMELYANVILQPDG 59

Query: 60  LAFG--GSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTRNNLESYIASF--- 107
           L +G    +   +  ++   Y        F   SE         N+ N     +      
Sbjct: 60  LDYGTVEQHSQADELLEAIRYEALDKLGYFLKPSELFSELAKRGNSGNKNNFILGDLANV 119

Query: 108 -------------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVP 151
                         D+   +FED D +S+        K  L+ K+  +  GI+   +   
Sbjct: 120 LTSIEQSTMGSESEDDFGNLFEDLDLTSSKLGKTEDAKNELIVKVLTHLEGIDFDLENSD 179

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F S   + A +F TP+ V  +   L+      L        +++YD
Sbjct: 180 SDILGDAYEYLIGQFASGAGKKAGEFYTPQQVSKILAQLVTTNKTKL--------KSVYD 231

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      V + G           +GQE  P T+ +C   M++  +       
Sbjct: 232 PTCGSGSLLLRVAKEVKEVGE---------FYGQESNPTTYNLCRMNMIMHDVHYKRFDI 282

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +++     +        KRF   ++NPPF   W      +  + +  + G+  P     
Sbjct: 283 YNEDTLVNPS---PNHLDKRFEAIVANPPFSANWSASPLFMSDD-RFSDYGKLAP----K 334

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S     F+ H+ ++L    +  G  A VL    LF G A   E  IR++L+E  + ++A+
Sbjct: 335 SKADFAFVQHMIHQL----DDNGTMATVLPHGVLFRGAA---EGHIRKFLIEEKNYLDAV 387

Query: 391 VALPTDLFFRTNIATYLWILSN------------RKTEERRGKVQLINATDLWTSIRNEG 438
           + LP ++F+ T+I T + +L               K  +R   +  I+A+  +  +    
Sbjct: 388 IGLPANIFYGTSIPTCILVLKKDRACHTEPVEVHDKKLKREETILFIDASAHFEKV---- 443

Query: 439 KKRRIINDDQRRQILDIYVSR---------------ENGKFSRMLDYRTFGYRRIKVLRP 483
           K + ++  +   +I+  Y +                   K+S +            +  P
Sbjct: 444 KTQNVLLPEHIDKIITTYRNYSCHTEPVEVDSIHPATIDKYSYVATLDEVKENDYNLNIP 503

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQS 513
             +    ++  +       + ++L    Q 
Sbjct: 504 RYVDTFEEEEPVDITAVAKSIKQLDHDMQQ 533


>gi|323972572|gb|EGB67775.1| N-6 DNA methylase [Escherichia coli TA007]
          Length = 507

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/526 (20%), Positives = 205/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDDYKKQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKIVSG 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HD----SRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGNLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ +++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKMIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  ++++  ++I+  Y   +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSEENIKKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  L  + A+    K+ 
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLVAVRAEREQLKVE 488


>gi|323937174|gb|EGB33454.1| N-6 DNA methylase [Escherichia coli E1520]
          Length = 507

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 208/543 (38%), Gaps = 57/543 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  ++++  ++I+  Y   +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSEENIKKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L+      +L         ++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEEEIDLLDVRAEREELKTELAKLETEMAGYLKE 502

Query: 525 QIY 527
             Y
Sbjct: 503 LGY 505


>gi|239637508|ref|ZP_04678481.1| type I restriction-modification system, M subunit [Staphylococcus
           warneri L37603]
 gi|239596903|gb|EEQ79427.1| type I restriction-modification system, M subunit [Staphylococcus
           warneri L37603]
          Length = 518

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 116/550 (21%), Positives = 211/550 (38%), Gaps = 67/550 (12%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58
           +TE        L   +W  A DL G+   ++F   IL     R L    E   +    ++
Sbjct: 3   ITEKQRQQQQELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEAEVAEALSDE 62

Query: 59  YLAFGGSNIDL-------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
            + +  +  D        E  ++  GY       +S       N R ++E    +     
Sbjct: 63  EITYEEAWKDEEYREDLKEELIENVGYYIEPQDLFSSMVKEIENQRFDIEHLSQAIRKVE 122

Query: 108 --------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    ++   +F D D SST       ++  L+ K+  + S +      +   ++ 
Sbjct: 123 TSTLGQDSEEDFVGLFSDMDLSSTRLGNTVKDRTALIGKVMVHLSELPFVHSDMEIDMLG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI RF +   + A +F TP+ V  +   ++    D L        R +YDPTCG+
Sbjct: 183 DAYEFLIGRFAANAGKKAGEFYTPQQVSKILAKIVTQGKDKL--------RNVYDPTCGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L                  +   +GQE    T+ +    ML+  +  +     + +I
Sbjct: 235 GSLLLRVGKETK----------VYRYNGQERNNTTYNLARMNMLLHDVRYE-----NFDI 279

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           Q G TL    F  ++F   ++NPP+   W  D    + E        +G  L  +     
Sbjct: 280 QNGDTLENPAFMDEKFDAVVANPPYSAHWSADSKFNDDE----RFSNYGK-LAPVKKADY 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + L    +  G  A+VL    LF  +A   E  IRR+L+E  + ++A++ LP 
Sbjct: 335 AFVQHMIHYL----DDEGTMAVVLPHGVLFRSQA---EGVIRRYLIEEKNYLDAVIGLPN 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T I+T + +   +K  E    V  I+A+  +   +N    +  + DD   +I+D 
Sbjct: 388 NLFFGTPISTCILVF--KKCREIDDNVLFIDASQSFEKGKN----QNHLTDDDVNKIVDT 441

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y  RE   K+S +            +  P  +    ++  +   +     + +       
Sbjct: 442 YSKRETIDKYSYVASLDDIKDNDYNLNIPRYVDTFEEEESIDLDQVQQDLKDIDKEIADV 501

Query: 515 WLDILKPMMQ 524
              I + + +
Sbjct: 502 ESKINEYLKE 511


>gi|21232333|ref|NP_638250.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767534|ref|YP_242296.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990647|ref|YP_001902657.1| type I site-specific DNA-methyltransferase catalytic subunit
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21114104|gb|AAM42174.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572866|gb|AAY48276.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732407|emb|CAP50601.1| type I site-specific DNA-methyltransferase catalytic subunit
           [Xanthomonas campestris pv. campestris]
          Length = 502

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 211/538 (39%), Gaps = 46/538 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  ++   +W   +   G    + +   +L    L+ +    +      + K+ 
Sbjct: 1   MNKTDIAQDTINAAVWTACDTFRGTVDPSVYKDYVLTMLFLKYVSDVWQDHYDDYKTKHG 60

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              G   +L   E FV     +FY   +              L +   +     + +F+D
Sbjct: 61  NKPGLIEELLKNERFVLPHRANFYTLYDQRHRPGNGERIDTALHAIEDANLGKLRDVFQD 120

Query: 118 FDFSSTIARLE--KAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F++     E  K  LL  + ++F+   + L P  +    ++ N YE+LI+ F S   +
Sbjct: 121 ISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFASSSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+G  L      + +   
Sbjct: 181 KAGEFYTPPEVSALMARLM----------DPQQGDEICDPTCGSGSLLLKCGRLIRERTG 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K       +GQE    T A+    M +   E + R +    I+    L+ +    K F
Sbjct: 231 SGKY----ALYGQEAIGSTWALAKMNMFLHG-EDNHRIEWGDTIRNPKLLAGNHL--KHF 283

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              ++NPPF  +KW  D    +         RF  GLP  + G   F++H+   ++    
Sbjct: 284 DIVVANPPFSLEKWGHDSADTDPHD------RFRRGLPPRTKGDYAFILHMIATMKPRT- 336

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR A+V+    LF G A   E  IR+ L+E +L++ ++ LP  LF+ T I   + +  
Sbjct: 337 --GRMAVVVPHGVLFRGAA---EGRIRQKLIEENLLDVVIGLPEKLFYGTGIPAAVLVFR 391

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
            +K ++   KV  I+A+  +   +N    + ++ +   ++ILD   +R+N  K++ +   
Sbjct: 392 TKKKDK---KVLFIDASRQYQDGKN----QNLLRESDLQRILDTVQARQNVDKYAYLASP 444

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                    +  P  +    ++  +  +       +L     +  + +   + +  Y 
Sbjct: 445 DEIAGHDYNLNIPRYVDTFEEEAEIDLMAVRREREQLKGELATLEMQMAAYLKELGYE 502


>gi|257090571|ref|ZP_05584932.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|312905100|ref|ZP_07764221.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|256999383|gb|EEU85903.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|310631490|gb|EFQ14773.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|315579072|gb|EFU91263.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0630]
          Length = 530

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/542 (20%), Positives = 218/542 (40%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSL------STLGSTNTRNNLESYI 104
                   L+   S  DL  + V + GYS      +++        +   N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYSISPEYLFNVLADQAKQAIFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           +S  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 SSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++
Sbjct: 393 SIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKD 445

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +  +      +K+    Q    ++L+
Sbjct: 446 VEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|24215896|ref|NP_713377.1| type I restriction enzyme [Leptospira interrogans serovar Lai str.
           56601]
 gi|24197104|gb|AAN50395.1| type I restriction enzyme [Leptospira interrogans serovar Lai str.
           56601]
          Length = 513

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 116/539 (21%), Positives = 206/539 (38%), Gaps = 68/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW+ A D+ G     DF + +L     R +        E   S+++
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+   + +   +    L + +A           
Sbjct: 60  YSKLNDKKITKEIKDDAIKTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  + ++    D+    +  + Y
Sbjct: 120 GFPSEHDIKGLFADFDTTSNRLGNTVKDKNSRLTAVLKRVAELDFGDFDSSHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQHVSKLIARLAIHKQTRINK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     D              GQE+   T+ +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL       ++ F   +SNPP+   W+   D      +     RF P   L   S    
Sbjct: 281 NTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      +   A   E +IR++L+ N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRSGA---EQKIRQYLVGNNFVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ +D   +I+  +
Sbjct: 389 LFFGTTIAVNILVLSKHKTDT---NTQFIDASGLFKKETN----NNILTEDHIERIMQTF 441

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPL 510
            S+ +   F++ +   T         V   +      +   + +L A++  T  K+  L
Sbjct: 442 DSKVDMEHFAKSVSVETIANNDYNLSVSSYVEAKDNREVIDIQKLNAELKTTVEKIDQL 500


>gi|190606537|ref|YP_001974822.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus
           faecium]
 gi|190350307|emb|CAP62659.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus
           faecium]
          Length = 515

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/529 (21%), Positives = 199/529 (37%), Gaps = 62/529 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M+  T     L + IWK A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MSSAT-QRTKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------- 109
              L       +++         F   S+       + NT  +L + +A+          
Sbjct: 60  YAELNDDVITNEIKEDAIKTKGYFIYPSQMFSRIAKTANTNESLNTDLAAIFSAIESSAN 119

Query: 110 ------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K   G++    +     +  + Y
Sbjct: 120 GYPSELDIKGLFADFDTTSNRLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQSVSSLIAQLAIHKQTTINK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A                   +GQE+   T+ +    M +  +  D       N    
Sbjct: 232 LLQAKKQFDAHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDKFHIALGNTLLD 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
               +D    K F   +SNPP+  KW   +D      +     RF P   L   S     
Sbjct: 286 PHYGED----KPFDAIVSNPPYSVKWIGSEDPTLINDE-----RFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E I++L  +L
Sbjct: 337 FVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIISLAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+IA  + +LS  K++    K Q I+A+        +     I+ D+   +I+ ++ 
Sbjct: 390 FYGTSIAVNILVLSKHKSD---NKTQFIDAS--GIEFYKKETNNNILTDEHIAKIMSMFD 444

Query: 458 SREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           S+E+    ++ +DY           V   +      +   +  L A+I 
Sbjct: 445 SKEDIDHVAKSIDYDDIVENDYNLSVSSYVEAKDTREIIDINDLNAEIK 493


>gi|312973900|ref|ZP_07788071.1| type I restriction-modification system, M subunit [Escherichia coli
           1827-70]
 gi|310331434|gb|EFP98690.1| type I restriction-modification system, M subunit [Escherichia coli
           1827-70]
          Length = 507

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/526 (21%), Positives = 203/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKIVSG 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HD----SRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  ++ +   +I+  Y   +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREFKAGKN----QNQLSAENIEKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  L  + A+    K+ 
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLVVRAEREQLKVE 488


>gi|91785554|ref|YP_560760.1| Type I restriction-modification system, M subunit [Burkholderia
           xenovorans LB400]
 gi|91689508|gb|ABE32708.1| Type I restriction-modification system, M subunit [Burkholderia
           xenovorans LB400]
          Length = 519

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/471 (20%), Positives = 177/471 (37%), Gaps = 63/471 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-- 67
            +   +W  A+    +    ++  ++L    L+ +       R+ +  ++          
Sbjct: 4   DIKKTLWATADKQRANMDAAEYKHIVLGLIFLKYISDTFAGRRAELTRRFADENDEYFLR 63

Query: 68  --DLESFVKVAGYS--------FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
             D E   +             F+        +L S   +       +   + I + +  
Sbjct: 64  ECDDELLAEELEDRDYYREVNVFWVPETARWESLRSAAKQTDIGKRIDEALAEIEAENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
            K I +     S +      G L ++    S I    D +    V+  +YE+ + +F S 
Sbjct: 124 LKGILDKRYARSQLP----DGKLGELVDLISTIGFGEDASHARDVLGQVYEYFLGQFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKKGGQFYTPASIVKTLVAVLAPH-----------HGKVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   +   T  ++    
Sbjct: 229 HGGKLG---DVSIYGQESNPTTWRLAAMNLAIRGI------DYNLGREPADTFVRNQHPD 279

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            R  + L+NPPF    W       +         R+  G P   + +  +L H+   L+ 
Sbjct: 280 LRADFVLANPPFNVSDWWHGSLEGD--------PRWVYGTPPQGNANYAWLQHMLYHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + + +    E +IRR +++ D++E +VALP  LFF T I   LW
Sbjct: 332 ----NGRAGIVLANGSMSSSQNS--EGDIRRAMVDADVVEVMVALPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            L+ +KT  R+G+V  I+A  L + I    + +  + D+   +I +   + 
Sbjct: 386 FLAKQKTT-RKGEVLFIDARKLGSMI---SRVQTELTDEIIERIANTVAAW 432


>gi|188492079|ref|ZP_02999349.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|188487278|gb|EDU62381.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|322616182|gb|EFY13098.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620877|gb|EFY17736.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623032|gb|EFY19874.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628322|gb|EFY25110.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634727|gb|EFY31458.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638706|gb|EFY35401.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322646506|gb|EFY43015.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649129|gb|EFY45570.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654495|gb|EFY50817.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660786|gb|EFY57019.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665112|gb|EFY61300.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667856|gb|EFY64016.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671732|gb|EFY67853.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677222|gb|EFY73286.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680115|gb|EFY76154.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685456|gb|EFY81452.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193665|gb|EFZ78869.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199972|gb|EFZ85060.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204703|gb|EFZ89700.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205731|gb|EFZ90694.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213701|gb|EFZ98484.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216764|gb|EGA01488.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223409|gb|EGA07739.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323231920|gb|EGA16027.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234447|gb|EGA18534.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323237898|gb|EGA21957.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243501|gb|EGA27520.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249498|gb|EGA33412.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254258|gb|EGA38076.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255083|gb|EGA38869.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261255|gb|EGA44843.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266620|gb|EGA50107.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271346|gb|EGA54772.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 507

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/526 (21%), Positives = 205/526 (38%), Gaps = 59/526 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                + +  E FV     SFY   E              L +   +      D  K++F
Sbjct: 62  PELIEAMMANERFVLPKSASFYTLYERRYEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L ++ ++F+G  + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKIVSG 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HD----SRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LK---PGTGRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I   +K ++   KV  I+A+  + + +N    +  ++ +  ++I++ Y   +N  K+
Sbjct: 390 AILIFKKQKVDD---KVLFIDASREYKAGKN----QNQLSAENIQKIVNTYREGDNVEKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           + +   +        + + R +      D+  L  + ++    K+ 
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRSEREQLKVE 488


>gi|289449831|ref|YP_003475628.1| type I restriction-modification system subunit M [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184378|gb|ADC90803.1| type I restriction-modification system, M subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 522

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/555 (22%), Positives = 210/555 (37%), Gaps = 73/555 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           T+       L   IW  A++L G     DF   +L     R +   +         E   
Sbjct: 5   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITNYINAGEIEAGN 64

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
           +      ++   +    +S V+  G+ F   SE   +         NL   +        
Sbjct: 65  TEFDYAQMSDDDAEEARQSLVEEKGF-FILPSELFCNVKAKAKGDENLNETLEKVFRHIE 123

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV---M 155
                     +   +F+DFD +S       A    K+CK   G+ +++   V +      
Sbjct: 124 ESAKGSESESDFAGLFDDFDVNSNKLGSTVAKRNEKLCKLLDGVADMNIGDVKNHDIDAF 183

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP DV  L T +               I  +YDP CG
Sbjct: 184 GDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRI--------GTVGKTEINKVYDPACG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A   +      +        +GQE+   T+ +C   M +  +  D       N
Sbjct: 236 SGSLLLKAEKVLGRDKIRNG------FYGQEINITTYNLCRINMFLHDIGFDK-----FN 284

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I    TL        + F   +SNPP+  KW  D + +          RF P   L   S
Sbjct: 285 IACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDDNPLLIND-----PRFAPAGVLAPKS 339

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ 
Sbjct: 340 KADLAFIMHSLSWL----ASNGTAAIVCFPGIMYRGGA---EQKIRKYLIDNNYVDCIIQ 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP++LFF T+IAT + +L   K +    K   I+AT+    + N       +      +I
Sbjct: 393 LPSNLFFGTSIATCIMVLKKGKED---NKTLFIDATNECIKVTN----NNKLTRKNMDKI 445

Query: 453 LDIYVS-RENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +D + + RE   FS +  Y           V   +      +K  + +L A+I  +++  
Sbjct: 446 VDCFANRREIEHFSHLATYDEIAENDYNLSVSTYVEAEDTREKIDIVKLNAEI--KEIVA 503

Query: 510 LHQSFWLDILKPMMQ 524
             Q    +I K + +
Sbjct: 504 REQVLRDEIDKIIGE 518


>gi|167740610|ref|ZP_02413384.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 14]
          Length = 535

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 117/563 (20%), Positives = 210/563 (37%), Gaps = 78/563 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR +    E   +  +   Y
Sbjct: 1   MTDL--EKQKLGKALWAIADQLRGAMNADDFRDYMLAFLFLRYISDNYEAAAKKELGSDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
                        L + G+  D+  F K      +     ++    +             
Sbjct: 59  PEAIDGAASTPLQLWYEGNFEDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDKELLK 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T     SYI   SF+   + +F + + +S            ++CK    I   L   +  
Sbjct: 119 TLQKGFSYIENESFASTFRGLFSEINLASDKLGKTYGERNAQLCKIIGEITKGLAAFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ V  + + ++              + ++ D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQPVSTILSTIVTLDSQEPATGQRSHLESVMD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHRMGTHG-------IGKIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D    +        +F   ++NPPF  +WE  +         GE  R
Sbjct: 287 SEFEIFHGDTLFNDWDMLRETNPAKMPKFDAVVANPPFSYRWESTEAM-------GEDVR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF   A   E+ IR  LL
Sbjct: 340 FKNHGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRSGA---EARIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEYFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLE 499
            +  +   +I+D Y  R E  ++SR +           + + R +  +   ++   A + 
Sbjct: 446 QLLPEHIHKIVDTYKFRKEEARYSRRVSMEEIEKHDFNLNISRYVSTAEADEEIDFAAVH 505

Query: 500 ADIT--WRKLSPLHQSFWLDILK 520
            ++    +K+    +     + +
Sbjct: 506 DELVSLGKKIKSATEQHNKFLKE 528


>gi|289168442|ref|YP_003446711.1| type I restriction-modification system DNA methylase [Streptococcus
           mitis B6]
 gi|288908009|emb|CBJ22849.1| type I restriction-modification system DNA methylase [Streptococcus
           mitis B6]
          Length = 523

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 122/535 (22%), Positives = 202/535 (37%), Gaps = 71/535 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++       L   IW  A+D+ G     DF + IL     R +   +         E   
Sbjct: 3   SKENAERKELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISEHMADYFDRAEHEAGD 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
              R   L+   +  D +         F   S+   + + + +   NL   +A+      
Sbjct: 63  LEFRYAELSDQEAEQDFKPGTVEDKGFFILPSQLFENVVENASQNENLNEDLANIFQAIE 122

Query: 108 --------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
                    D+ K +F++ D  S I      EK   L  I    + I        D    
Sbjct: 123 KSAIGFKSEDDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + S   +   +F TP+ V  L   L++   D + K        +YDPTCG
Sbjct: 183 GDAYEFLISNYASNAGKSGGEFFTPQTVSKLLARLVMVGKDKINK--------VYDPTCG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L        D              GQE+    + +    M +  +  +     + +
Sbjct: 235 SGSLLLQMKKQYEDHILEDG------FFGQEINMTNYNLARMNMFLHNINYN-----NFD 283

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL        K F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 284 IKRGDTLLNPQHLEEKPFDAIVSNPPYSVKWVGDGDPTLINDD-----RFAPAGKLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  N L    +  GRAAIV      + G A   E  IR++L++N+ +EA+++
Sbjct: 339 KADFAFIMHSLNHL----SNKGRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVIS 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L+  K E    K   I+A+  +    N      ++ D     I
Sbjct: 392 LPDNLFFGTSIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNIEHI 444

Query: 453 LDIYVSRENGKF-SRMLDYRTFGY---RRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++++ + +N  + S ++     G      + V   +      +K  +  L  +I 
Sbjct: 445 VELFSNYQNVDYKSALVGNDVIGSEQDYNLSVSTYVEQEDTREKIDINVLNKEIA 499


>gi|229165871|ref|ZP_04293637.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH621]
 gi|228617576|gb|EEK74635.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH621]
          Length = 538

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 215/558 (38%), Gaps = 51/558 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +A  + + +W+ A  L G    +++   ILPF   R L    +     + + E Y     
Sbjct: 3   NATDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNDLEEFYEVTDD 62

Query: 65  SNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKAI----- 114
           +  +  LE   K  GY+      +        N +    + +    SF+ NAK       
Sbjct: 63  TEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTNAKRNAIAEA 122

Query: 115 -----FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                F D +   T    +  E+A  L  I    +      D     ++ ++YE+LI +F
Sbjct: 123 DFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFTF-KDDSGHDILGDVYEYLIGQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP +V  +   ++         +       +YDPT G+G  L    N 
Sbjct: 182 AANAGKKGGEFYTPHEVSQVLAKIVTIDAAGTGDQ-----FRVYDPTMGSGSLLLTVQNE 236

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +      +      +GQEL   T+ +    +++  +          +         + 
Sbjct: 237 LPNGDEEGSVE----FYGQELNTTTYNLARMNLMMHGVNYRNMELKRADTLDADWPFAEK 292

Query: 287 FTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +   +F   ++NPP+ +KW+      EK+ +       G G+   S     F++H  
Sbjct: 293 DGTQIPLKFDAVVANPPYSQKWDTKDVDREKDTRFK-----GYGVAPASKADYAFILHGL 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L    +  G  AIVL    LF G +   E  IR+ +++N+L++ ++ LP +LF+ T I
Sbjct: 348 YHL----DKAGTMAIVLPHGVLFRGAS---EGRIRKNIIDNNLLDTVIGLPANLFYGTGI 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   R+  + +  +  I+A++ +   +N    +  ++ +   +I++ Y  RE+  
Sbjct: 401 PTCVLVFKGREARKNKD-ILFIDASNEFEKGKN----QNKLSAENINKIIETYSIREDVE 455

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K++ +            +  P  +    ++  +   +      ++     + +  + + +
Sbjct: 456 KYAHVASLDEIKENDYNLNIPRYVDTFEEEEVIPLSQVAQELTEVKADIANSYDKLFELL 515

Query: 523 MQQIYPYGWAESFVKESI 540
            +       A+  + + I
Sbjct: 516 NELNGTTDEAKEELSKFI 533


>gi|294616002|ref|ZP_06695828.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1636]
 gi|291591136|gb|EFF22819.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1636]
          Length = 530

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 109/544 (20%), Positives = 221/544 (40%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            ++Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEHVVLLADESLDEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           AS  +    +F+D D  S     +   +   + ++ K  + +++        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVLEH--DGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|152979298|ref|YP_001344927.1| type I restriction-modification system, M subunit [Actinobacillus
           succinogenes 130Z]
 gi|150841021|gb|ABR74992.1| type I restriction-modification system, M subunit [Actinobacillus
           succinogenes 130Z]
          Length = 505

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/536 (20%), Positives = 207/536 (38%), Gaps = 61/536 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63
           +   +   +W   +   G      +   IL    L+ +    +      + +Y       
Sbjct: 6   NQDDINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYQNYQAEYGDVPELI 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIFEDFD 119
              +  E FV     +FY   E+             L +   +      D  K++F+D  
Sbjct: 66  EEMMKQERFVLPPQANFYYLYEHRFEAGNGERIDLALHAIEEANGTKLKDAGKSVFQDIA 125

Query: 120 FSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           F++     EK    +L ++ ++F+   ++L P  V    ++ N YE+LI+ F +   + A
Sbjct: 126 FNTDKLGEEKQKNTILRELLEDFAKPELDLKPSRVGTLDIIGNAYEYLIKNFAASGGQKA 185

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L   LL           P +  ++ DP CG+G  L      V       
Sbjct: 186 GEFYTPPEVSDLIAELL----------DPQIGDSICDPACGSGSLLMKCGRKVQQNYQSK 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
                   +GQE    T ++    M +         + +  I+ G T+     T K    
Sbjct: 236 NYE----LYGQEAIGSTWSLAKMNMFLH-------SEDNHRIEWGDTIRNPKLTDKQGNL 284

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F    +NPPF       +     E       RF  GLP  + G   F+ H+   L+  
Sbjct: 285 LKFDIVTANPPFSLDKWGYE-----EAGQDRFQRFVRGLPPKTKGDYAFISHMIATLK-- 337

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +G GR  +V+    LF G A   E +IR+ L+E +L++A++ LP  LF+ T I   + I
Sbjct: 338 -DGTGRMGVVVPHGVLFRGAA---EGKIRQKLIEENLLDAVIGLPEKLFYGTGIPAAILI 393

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
               KT++    V  I+A+  + + +N    +  +  +   +I   Y +R+   K++ + 
Sbjct: 394 FRKDKTDD---SVLFIDASQEFKAGKN----QNTLTSENITKIHRTYQARQAVEKYAYLA 446

Query: 469 DYRTFGYR--RIKVLRPLRMSFILDKTGLARLEAD--ITWRKLSPLHQSFWLDILK 520
           D+         + + R +      +K  L  +  +     ++L+ L +     + +
Sbjct: 447 DFAELKENDFNLNIPRYVDTFEAEEKIDLNAVRTERLALQQELAELEEKMAGYLKE 502


>gi|237798537|ref|ZP_04586998.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021390|gb|EGI01447.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 540

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 109/570 (19%), Positives = 200/570 (35%), Gaps = 79/570 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY--- 59
              +   L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y   
Sbjct: 2   NDTNRKQLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDYPEL 61

Query: 60  ---------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--------- 95
                          + +  +  D+ +F K      +   E +       N         
Sbjct: 62  PTDVLVKKGAATPLQVWYQENKADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQNGEL 121

Query: 96  --TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDT 149
             T      YI   SF    + +F + +  S            K+C     I   L+  +
Sbjct: 122 LSTLQAGFKYIETESFESTFQGLFSEINLGSDKLGRTYVDRNAKLCTIIQKIAEGLNEFS 181

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                + + YE+LI +F +   + A +F TP+ +  + +A++              + ++
Sbjct: 182 TDIDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGPKKRLESV 241

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D  CG+G  L +    V   G       +   +GQE    T+ +    ML+  +     
Sbjct: 242 LDFACGSGSLLLNVRKRVGPHG-------VGKIYGQEKNITTYNLARMNMLLHGV----- 289

Query: 270 RDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +D    I  G TLS D    +         F   ++NPPF  +W   +   +        
Sbjct: 290 KDTEFEIYHGDTLSNDWDILRELNPAKKPAFDAIVANPPFSYRWNPTEAMADDVRFKNH- 348

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                G+   S     FL+H  + L+      G  AI+L    LF   A   E  IR  L
Sbjct: 349 -----GVAPKSAADFAFLLHGFHFLK----DEGVMAIILPHGVLFRSGA---EERIRTKL 396

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP++LF+ T I   + +L   K  +    V  INA + +      GK++
Sbjct: 397 LKDGHIDTVIGLPSNLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHFAK----GKRQ 449

Query: 442 RIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL 498
             + ++   +I+  Y +RE    ++R ++          + + R +  +    +  L  +
Sbjct: 450 NQLTEEHIAKIISTYQTREPEPGYARRVEMEEIEKNGYNLNISRYISTASTETEIDLQAV 509

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             ++    L    Q         + +   P
Sbjct: 510 NDELA--ALEEATQEARDKHNAFLKELGLP 537


>gi|257078398|ref|ZP_05572759.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis JH1]
 gi|294780143|ref|ZP_06745515.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis PC1.1]
 gi|256986428|gb|EEU73730.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis JH1]
 gi|294452686|gb|EFG21116.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis PC1.1]
          Length = 529

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 217/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLKDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLAPEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|260887979|ref|ZP_05899242.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|330838539|ref|YP_004413119.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260862230|gb|EEX76730.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|329746303|gb|AEB99659.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 525

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 117/533 (21%), Positives = 201/533 (37%), Gaps = 71/533 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRS 53
           +     A L   IW+ A DL G     DF + +L     R +   L         E   +
Sbjct: 4   KKEMERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTNYLNREAQEAGDA 63

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
           A     L+   +  + E+ V+  GY F   SE   +   S  T  NL   +         
Sbjct: 64  AFDYAALSDEEAETERENLVEEQGY-FILPSELFANVRKSAPTNENLNETLEKVFHNIEA 122

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMS 156
                   ++   +FED D +S            K+ K   GI E+      D       
Sbjct: 123 SATGTASENDLAGLFEDLDVNSNKLGATVKERNAKLVKLLDGIGEMQLGHYRDNTIDAFG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   ++ TP++V  L T L +     + K        +YDP CG+
Sbjct: 183 DAYEYLMGMYASNAGKSGGEYYTPQEVSELLTRLTVIGKARVNK--------VYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +      +        +GQE+   T+ +C   M +  +  D       +I
Sbjct: 235 GSLLLKFAKILGKENVRNG------FYGQEINITTYNLCRINMFLHDINFD-----DFDI 283

Query: 277 QQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
            +G TL+       + F   +SNPP+  +W   ++ +          RF P   L   S 
Sbjct: 284 ARGDTLTDPQHDAFEPFEAIVSNPPYSIRWAGKENPLLIND-----PRFAPAGVLAPPSK 338

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H    L       G AAIV     ++ G A   E +IR++L++++ ++A++ L
Sbjct: 339 ADFAFILHALAWLAA----NGTAAIVCFPGIMYRGGA---EKKIRQYLIDSNFVDAVIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+IAT + +L   K +        I+A+     + N       +  +    IL
Sbjct: 392 PDNLFFGTSIATCIMVLKKSKADTT---TLFIDASKECIKVTN----NNKLTQENIEHIL 444

Query: 454 DIYVSREN-GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADIT 503
            +Y  R +     R +  +        + V   +      +   +A L A+I 
Sbjct: 445 QMYTDRADVAHTVRCVQSKEIAAEDYNLSVSTYVESEDTREVIDIAALNAEIR 497


>gi|256960372|ref|ZP_05564543.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis Merz96]
 gi|293384345|ref|ZP_06630230.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis R712]
 gi|293388418|ref|ZP_06632926.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis S613]
 gi|312908546|ref|ZP_07767490.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312908984|ref|ZP_07767846.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 516]
 gi|256950868|gb|EEU67500.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis Merz96]
 gi|291078337|gb|EFE15701.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis R712]
 gi|291082193|gb|EFE19156.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis S613]
 gi|310625513|gb|EFQ08796.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 512]
 gi|311290684|gb|EFQ69240.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315149120|gb|EFT93136.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0012]
          Length = 529

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 217/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLAPEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|38234849|ref|NP_940616.1| putative type I restriction/modification system DNA methylase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38201113|emb|CAE50837.1| Putative type I restriction/modification system DNA methylase
           [Corynebacterium diphtheriae]
          Length = 535

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 191/476 (40%), Gaps = 60/476 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GS 65
           ++  + + +WK+A+ L G    + +  V L    L+ +  + E  +  +R +    G   
Sbjct: 14  TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGKGFDE 73

Query: 66  NIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTRNNL---ESYIASFSDNAKAIF--E 116
              LE    V  Y+    F+  S      L   +   +L      I    D A      +
Sbjct: 74  EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQLMAD 133

Query: 117 DFDFSSTIARLE-----KAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSE 169
           +     T+ ++          L ++   FS        D     ++  +YE+ + +F   
Sbjct: 134 NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA 193

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP+ VV     +L   +             +YDP CG+GG    A   +  
Sbjct: 194 EGKRGGEFYTPQPVVRTLVEILEPTEG-----------RVYDPCCGSGGMFVQAEKFLE- 241

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                +    +  +GQEL   T  +    + I  + S          + G T ++D+  G
Sbjct: 242 --VTKRDRSNIAVYGQELNERTWRMAKMNLAIHAISSSG-----LGERWGDTFARDIHAG 294

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  Y ++NPPF  K            +N E  R+  G+P   + +  ++ H+ +KL+  
Sbjct: 295 TKMDYIMANPPFNIKDWI---------RNEEDARWKYGVPPAKNANFAWIQHIISKLK-- 343

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +V+++  + +  +G  E EIR+ ++E+D++  ++ALP  LF  T I   +W 
Sbjct: 344 --DHGEAGVVMANGTMTSQSSG--EGEIRKNMVEDDVVSCVIALPAQLFRGTGIPVCVWF 399

Query: 410 LSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +  K+       +RRG+V LI+A  L   I    +  R  +D+   +I + + + 
Sbjct: 400 FAKDKSAGVGGSVDRRGEVLLIDARQLGHMI---DRTERAFSDEDITKIANAFRTW 452


>gi|187927550|ref|YP_001898037.1| type I restriction-modification system, M subunit [Ralstonia
           pickettii 12J]
 gi|187724440|gb|ACD25605.1| type I restriction-modification system, M subunit [Ralstonia
           pickettii 12J]
          Length = 537

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 113/538 (21%), Positives = 201/538 (37%), Gaps = 64/538 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTDL--EKQKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGRDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
                          +  +  D+  F K      +     ++    +             
Sbjct: 59  PQQLDSSVSTPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAVLLK 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T     SYI   SF+   + +F + + +S       A    ++CK    I   L   +  
Sbjct: 119 TLQKGFSYIETESFASTFRGLFSEINLASDKLGKTYAERNARLCKIIKEIADGLKQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              +  + D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDRVMD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDP 268
             CG+G  L +  + + +             +GQE    T+ +    ML+  +   E + 
Sbjct: 239 LACGSGSLLLNVRHRMKEAKGTIG-----KIYGQEKNITTYNLARMNMLLHGVKDSEFEI 293

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327
               +   +       +     +F   ++NPPF  +WE  +         GE  RF   G
Sbjct: 294 FHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEAL-------GEDVRFKNYG 346

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H    L+      G  AI+L    LF G A   E+ IR  LL++  I
Sbjct: 347 LAPKSAADFAFLLHGFQFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLLKDGHI 399

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++  I  +
Sbjct: 400 DTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFEK----GKRQNQILPE 452

Query: 448 QRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI 502
              +I+D Y  R E  ++SR +           + + R +  +   ++  LA + A++
Sbjct: 453 HIDKIIDTYQFRKEEARYSRRVGMEEIEKNDFNLNISRYVSTTEAEEEIDLAAVHAEL 510


>gi|32455519|ref|NP_862271.1| hypothetical protein pRV500_p03 [Lactobacillus sakei]
 gi|24461246|gb|AAN61993.1|AF438419_3 HsdM [Lactobacillus sakei]
          Length = 510

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/535 (20%), Positives = 200/535 (37%), Gaps = 67/535 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T     + + +W+ A+ L G    + +  V+L    L+ +  +      ++ +   
Sbjct: 1   MAKKTAEL-KIEDALWQAADQLRGSMDASQYRNVVLGLIFLKYVSDSFNEKYESLIKSDY 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
                + D+      A   F+   E     + S         T +     I   +D  K 
Sbjct: 60  PEDAEDRDM----YTAENIFWLPKEARWDVIASDAKTPEIGETIDKAMEAIERENDQIKG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + ++     L  +    S I++  +    + V+  +Y++ +  F ++  +
Sbjct: 116 VLPKNYASPDLDKV----RLGGVIDLISNIKVGDEESRKNDVLGRVYDYFLSNFAAQEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR +V     +L                 +YDP  G+GG    +   V +   
Sbjct: 172 NGGEFYTPRSIVRTLVEMLEPYKG-----------RIYDPAAGSGGMFVQSEEFVRE--- 217

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H  +   L  +GQE  P T  +    + IR +++D          QG T + DL  G+RF
Sbjct: 218 HQGVISDLSVYGQEANPTTWKLAKMNLAIRGIDND------FGPHQGDTFTNDLHKGRRF 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y L+NPPF  K        +         R+  G+P   + +  ++ H+ +KL      
Sbjct: 272 DYILANPPFNLKEWGADKLQDD-------SRWVYGVPPEGNANYAWIEHMISKL----AP 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL++  L    +   E  IR+ +LE D I+AIVALP  +F+ T I   LW +  
Sbjct: 321 DGKAGFVLANGALST--STKEEYAIRKAILEADKIDAIVALPGQMFYSTQIPVSLWFVDM 378

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------- 459
            K      +R G+   I+A +L        +  +    +   +I D Y +          
Sbjct: 379 NKASSDERKRNGETLFIDARELGFMA---DRTHKEFAREDIAKIADTYHAYRGTNDQVYE 435

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   FS+             VL P R   + ++        +   R  S L   F
Sbjct: 436 DVPGFSKAAMIEEIRENDY-VLTPGRYVGLAERQDDGEPYEEKMARLTSELSDQF 489


>gi|194333150|ref|YP_002015010.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271]
 gi|194310968|gb|ACF45363.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271]
          Length = 547

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 131/576 (22%), Positives = 220/576 (38%), Gaps = 81/576 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----- 55
           M    G+  SL ++IW+ A  + G      +   ILP    +RL    +   + +     
Sbjct: 1   MVNNNGNRKSLESWIWEAACSIRGAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 56  -REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNA 111
            R+K      ++  L  F             +S+    S      + +Y   IA  +   
Sbjct: 61  SRKKAFQLARADHKLVRFYLPLIPDDPEQPVWSVIRKLSDRIGEGVTTYMRAIARENPLL 120

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + I +  DF++T    R      L  + +  S   L  D V   ++   YE+LIR+F   
Sbjct: 121 QGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLDDVEADIIGKSYEYLIRKFAEG 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  + +  L           P     +YDPTCG+GG L      + +
Sbjct: 181 GGQSAGEFYTPPEVGTIMSRAL----------QPEQGMEIYDPTCGSGGLLVKCEIAMEE 230

Query: 230 CGSHHKI---------------------------PPILVPHGQELEPETHAVCVAGMLIR 262
                K                               L   GQE  PET A+    M+I 
Sbjct: 231 QRREIKEGGHSCPPLHSELNGYPLCNGGLENPPSFAPLKLFGQEYIPETWAMANMNMIIH 290

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +E             G T     F  K+     F   ++NP + + W       E ++ 
Sbjct: 291 DMEGQIEI--------GDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEADYD 337

Query: 318 NGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-- 373
           N EL RF  G G P  S     ++ H+   L    N  GRAAIVL +  +  G   +G  
Sbjct: 338 NDELDRFPAGAGFPGKSSADWGWVQHMHASL----NDTGRAAIVLDTGAVSRGSGNAGTN 393

Query: 374 -ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  +R+W ++ND+IE+++ LP +LF+ T     +  L+  K E+R+ KV L+NA+ ++ 
Sbjct: 394 KEKNVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNKAKPEDRKSKVFLVNASRIFE 453

Query: 433 SIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                G  +  I D+  ++I+D     +E  K SR++D+         +  P R     +
Sbjct: 454 K----GDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVDHAELKKNDYNIS-PSRYIHTGE 508

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 +   +                L+ +++Q+ 
Sbjct: 509 AETYRLIPEIVKELNAIEEEARETDKALRNILKQLG 544


>gi|227517373|ref|ZP_03947422.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227075243|gb|EEI13206.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
          Length = 529

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/546 (20%), Positives = 218/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ LA   S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLADEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLATEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|17232089|ref|NP_488637.1| type I restriction-modification system DNA methylase [Nostoc sp.
           PCC 7120]
 gi|17133734|dbj|BAB76296.1| type I restriction-modification system DNA methylase [Nostoc sp.
           PCC 7120]
          Length = 527

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 107/520 (20%), Positives = 188/520 (36%), Gaps = 67/520 (12%)

Query: 1   MTEF---TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE      ++ S    +WK A+ L  +    ++  ++L    L+ +  A E     +  
Sbjct: 1   MTEKAAKQNNSESFEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFEELHQKLLA 60

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------LESYIASFSD 109
               + G+N + +     A   F+   E   S L     + +        +E+     + 
Sbjct: 61  GEGDYAGANPE-DRDEYSAENVFFVPVEARWSYLQGQAKQPDIGKTVDLAMEAIEQENAK 119

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
             K I         + +    GL          I L         V+  +YE+ + +F  
Sbjct: 120 RLKGILPKVYGQQKLDQKSLGGL----IDLIGSITLGDAEAQAQDVLGRVYEYFLGQFAL 175

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TP  +V L   +L   +             ++DP CG+GG    +   V 
Sbjct: 176 AEGKKGGQFYTPESIVKLLVEMLEPYNG-----------RVFDPCCGSGGMFVQSEKFVK 224

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +   H      +  +GQE    T+ +C   + IR ++    +   +      +   D   
Sbjct: 225 N---HQGRLDDISIYGQESNETTYKLCRMNLAIRGIDGSNIKWNPEG-----SFLNDAHK 276

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMHLANKL 346
             +  + ++NPPF       +            GR+     +P + + +  ++ H    L
Sbjct: 277 DLKADFVIANPPFNDSDWGGELLRND-------GRWLDKDLVPPVGNANFAWVSHFIYHL 329

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G A  VLS+  L      SGE +IR+ L++ DL++ IV LPT LF+ T I   
Sbjct: 330 ----APTGSAGFVLSNGSL--SSNTSGEGDIRKALVQKDLVDCIVMLPTQLFYNTGIPAC 383

Query: 407 LWILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---- 458
           LW LS      K  +R G+V  I+A++L   +    +  R   + +  +I D Y      
Sbjct: 384 LWFLSRYKNGNKNRDRHGEVLFIDASELGYMV---NRSSRAFTEAEISKIADTYHEWKKS 440

Query: 459 ----RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
               R+   F +             VL P R   I D+  
Sbjct: 441 GGSYRDIKGFCKSASIAEIEKHNF-VLTPGRYVGIPDEVE 479


>gi|293603337|ref|ZP_06685765.1| type I restriction-modification system DNA-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818247|gb|EFF77300.1| type I restriction-modification system DNA-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 535

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 208/554 (37%), Gaps = 76/554 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTDL--EKQKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKRELGQDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
                          +  +  D+  F K      +     +Y    +             
Sbjct: 59  PIQIDNSVSTPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAELARTQDGELLK 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T     SYI   SF+   + +F + + +S            ++CK    I   L   +  
Sbjct: 119 TLQRGLSYIETESFASTFRGLFSEINLASDKLGKTYTERNARLCKIIMEIADGLSQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              +  + D
Sbjct: 179 SDTLGDAYEYLIGQFAAGSGKKAGEFYTPQPISTILSAIVTLDGQEPATGQRSHLDNVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +   G       I   HGQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHRMGPHG-------IGKIHGQEKNITTYNLSRMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              +I  G TL  +    +        +F   ++NPPF  +W+      E          
Sbjct: 287 SEFDIFHGDTLLNEWDALRETNPAKMPKFDAVVANPPFSYRWDSSASLAEDMRFKN---- 342

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              GL   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL 
Sbjct: 343 --YGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLLR 393

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++  
Sbjct: 394 DGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFEK----GKRQNQ 446

Query: 444 INDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEA 500
           +  +   +I+D Y  R+   ++SR +           + + R +  +   ++  LA + A
Sbjct: 447 LLPEHIDKIIDTYQFRKVEPRYSRRVGMEEIEKNDFNLNISRYVSTAEAEEEIDLAAVHA 506

Query: 501 DI--TWRKLSPLHQ 512
           ++  T +K++   +
Sbjct: 507 NLLATEQKIAEAKK 520


>gi|326319451|ref|YP_004237123.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376287|gb|ADX48556.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 520

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 181/471 (38%), Gaps = 64/471 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-------REKYLAF 62
            +   +W  A+ L  +    ++  ++L    L+ +        + +        ++Y   
Sbjct: 4   DIKKTLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFTARTAELAARLRDPDDEYFYG 63

Query: 63  GGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
             S+ D+ + ++   Y      F+         + +   +       ++    I + +  
Sbjct: 64  DASDEDIAAELEDRDYYTSANVFWVPEAARWEAIRAAAKQTTIGKHIDDALGLIEAENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
            K I +     + +      G L ++    S I    D  V   V+  +YE+ +  F S 
Sbjct: 124 LKGILDKRYARAQLP----GGKLGELVDLVSTIGFGTDPAVARDVLGQVYEYFLGMFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPASIVKTLVAVLAPH-----------HGKVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   +   T + +    
Sbjct: 229 HGGKLG---DVSIYGQEANPTTWRLAAMNLAIRGI------DFNLGREPADTFTHNQHPD 279

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            R  Y L+NPPF    W     A +         R+  G P   + +  +L H+ + L+ 
Sbjct: 280 LRADYILANPPFNISDWWHGSLAGD--------ARWHYGDPPQGNANYAWLQHMLHHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + + +  + E  IR  +++ D++E +VALP  LFF T I   LW
Sbjct: 332 ----TGRAGIVLANGSMSSSQ--NNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            LS RK  +R+G+V  I+A  L   I    + +  ++D    +I +   + 
Sbjct: 386 FLSQRK--KRKGEVLFIDARKLGKMI---SRVQAELDDAAIARIAETVAAW 431


>gi|28868301|ref|NP_790920.1| type I restriction-modification system subunit M [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851538|gb|AAO54615.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 576

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 178/479 (37%), Gaps = 63/479 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + +   L   +W  A+ +  +    ++  ++L    L+ +  +    R+ +  K+  
Sbjct: 50  TATSSTLQDLEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERKFSD 109

Query: 62  FGGSNI------------DLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLES 102
            G                  E         F+        +L +   +       ++  +
Sbjct: 110 AGDDYYLGGDDPTYLASELEERDYYKEVNVFWVPEPARWESLRAAAKQVDIGKRIDDALA 169

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEH 161
            I + +   K I +     + +      G L ++    S I    D      ++  +YE+
Sbjct: 170 DIEAENPQLKNILDKRYARAQLP----DGKLGELVDMISIIGFSSDANKARDLLGQVYEY 225

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F S   +    F TP  +V    A+L                 +YDP CG+GG   
Sbjct: 226 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPH-----------HGKVYDPCCGSGGMFV 274

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +   +   G        +  +GQE  P T  +    + IR +      D +   +   +
Sbjct: 275 QSEKFIEAHGGKLG---DVSIYGQESNPTTWRLAAMNLAIRGM------DFNLGKEPADS 325

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             ++  +  R  + L+NPPF    W                 R+  G P   + +  +L 
Sbjct: 326 FIRNQHSDLRADFVLANPPFNISDWWHGSL--------DGDSRWVYGTPPQGNANYAWLQ 377

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+      GRA IVL++  + + +    E +IRR ++E D++E +VALP  LFF 
Sbjct: 378 HMLFHLK----SSGRAGIVLANGSMSSSQNS--EGDIRRAMVEADVVEVMVALPGQLFFN 431

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T I   LW L+ +K  +R G+V  I+A  L T+I    + +  + D     I     + 
Sbjct: 432 TQIPACLWFLAKQKN-KRPGEVLFIDARKLGTNI---SRVQIELLDSDIESIAQTVANW 486


>gi|291556523|emb|CBL33640.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 805

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 106/526 (20%), Positives = 206/526 (39%), Gaps = 53/526 (10%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
            ++  L + +++    L G     ++   + P    +RL    +    A  E+       
Sbjct: 313 TTSQKLFSHLFEACNILRGPINQDEYKSYVTPILFFKRLSDVYDEETQAALEESGGDEEY 372

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            S  +   FV   G  + +  E S +        N +     +  D    +F  FD ++ 
Sbjct: 373 ASFAENHRFVIPDGCHWQDVREASENV--GVAIVNAMNGIERANPDTLSGVFSSFDDANW 430

Query: 124 IARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             + +     L  + ++ S +++  +     VM + YE LI++F     + A +F TPR 
Sbjct: 431 TDKTKLSDERLKDLIEHMSKLKVGNNNYSADVMGDSYEFLIKKFADLSKKNAGEFYTPRS 490

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   LL          +P    T+YDP CGTGG L +A+  +     H         
Sbjct: 491 IVKLLIMLL----------APKAGETVYDPACGTGGMLIEAIRFM-----HGDKLTYGRI 535

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCLSN 298
           +GQE    T A+    + +   +          + QG TL    +  +     F   ++N
Sbjct: 536 YGQEKNLATSAIARMNLFLHGAKD-------FKVTQGDTLRSPNYLERGSLQTFDCVVAN 588

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K    +     +  +   GR   G P  S+G   +L H+   +       GR A+
Sbjct: 589 PPFSLKNWGSE-----QFSSDIYGRNIWGCPTDSNGDFAWLQHMVKSM---NPKTGRCAV 640

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF       E EIR+ L+E+D +EAI+ + + +F+ T ++  +  L+N K    
Sbjct: 641 VLPQGVLFRS---GKEGEIRKQLVESDKLEAIITMASGVFYSTGVSACILFLNNNKAVSH 697

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYRR 477
           RG++ +I+ + ++T      + + I+ +   + + D Y + E+  +  +++       + 
Sbjct: 698 RGRICMIDGSSIYTP----QRAQNIMTEADIQTVFDYYTTYEDVIEKVKIVTIADIREKD 753

Query: 478 IK------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
                   + +  + +   ++      EA     +     +   L 
Sbjct: 754 YSLAINNYIEKKEQETVPPEEIRRQYFEAYDEMIEAETRMRELLLK 799


>gi|251811429|ref|ZP_04825902.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805058|gb|EES57715.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 504

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 195/524 (37%), Gaps = 66/524 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W+ A+ L G     ++  V L    L+ +  + E     +++   A      +  
Sbjct: 6   FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDSYADEEDQDEY- 64

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
               +A   F+   E     +     +       +     I + +++ K +         
Sbjct: 65  ----LAENIFWVPKEARWQYINDNAKKPEIGQMIDKAMIAIENENESLKGVLPKEYARPA 120

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +      L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +
Sbjct: 121 LDK----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI 176

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 +YDP CG+GG    +   V     H      +  +
Sbjct: 177 VKLLVEMIEPYKG-----------RIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIY 222

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF  
Sbjct: 223 GQESNPTTWKLAKMNLAIRGIDND------LGERNADTFHNDLHKGLKADYILANPPFNA 276

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++ 
Sbjct: 277 SDWGQEQLLDD-------YRWQFGIPPKGNANYAWIEHMISKL----APNGTAGFVLANG 325

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERR 419
            +    +G  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ERR
Sbjct: 326 SMST--SGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERR 383

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGKFSRMLDY 470
            ++  I+A ++   +    +  +  +D+  +++   Y +          +   F ++   
Sbjct: 384 NEILFIDAREIGHMV---SRTLKEFSDEDIQKVAQTYHAWRGTNDKSYEDIAGFCKVAKL 440

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                    +L P R   + D             R  S L + F
Sbjct: 441 EEVKNNEY-ILTPGRYVGLADVEEDKEPFEQKMERITSELSEQF 483


>gi|253756219|ref|YP_003029359.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
 gi|251818683|emb|CAZ56518.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
          Length = 529

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 108/547 (19%), Positives = 212/547 (38%), Gaps = 79/547 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------PTRS 53
            + +  ++ N IW  A +L G+   +++   IL F   R L    E          P   
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 54  AVREKYLAFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
              +   A      DL   ++      GY+      ++       N+      Y   F  
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 109 ------------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                       ++ + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++      L  E      ++YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT-----LGLEKSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+ T I T + +    +   +   V  I+A+  +   +N    +  +
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNR---QTKDVFFIDASKEFEKGKN----QNHL 443

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +DD   +I++ Y +R++  K++ +            + + R +      ++  L ++   
Sbjct: 444 SDDMVEKIVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQ 503

Query: 502 ITWRKLS 508
           +   +L 
Sbjct: 504 LEQDRLE 510


>gi|15645469|ref|NP_207643.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313984|gb|AAD07898.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 527

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/556 (21%), Positives = 215/556 (38%), Gaps = 73/556 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVR 56
           + +     L N IWK A +L G     DF + +L     R +   +      E  +    
Sbjct: 9   QASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKRDPS 68

Query: 57  EKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             Y        +   +  ++  G+ F   S    + L +     +L   + +        
Sbjct: 69  FDYAKLSDEKAERGRKHLIEQKGF-FIPPSALFCNALKNACHNEDLNVTLQNIFNEIEKS 127

Query: 108 ------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                  +N K +F D D +S     +   +   L KI +   G++L         V  +
Sbjct: 128 SLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVFGD 187

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G
Sbjct: 188 AYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNK--------VYDPCCGSG 239

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      + D              GQE+   T+ +C   M +  +          +I 
Sbjct: 240 SLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIA 288

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL        + F   +SNPP+  KW  D + +    +     RF P   L   +  
Sbjct: 289 HGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPILINDE-----RFSPAGVLAPKNAA 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP
Sbjct: 344 DLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL 
Sbjct: 397 DNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLKERNREKILQ 449

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            Y+ R E   F  + +            V R +      +   +  L ++I         
Sbjct: 450 TYIERKEIKHFCALANIEKIKENDYNLSVNRYVEQEDTKEAIDIKALNSEIAQI---VEK 506

Query: 512 QSFWLDILKPMMQQIY 527
           QS   + L+ +++++ 
Sbjct: 507 QSALRNRLESIIKELE 522


>gi|325202378|gb|ADY97832.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240149]
          Length = 513

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/533 (22%), Positives = 202/533 (37%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y  S+   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PSQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 119 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++    I+ +
Sbjct: 388 NLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLTEEHIADIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEI 490


>gi|257417159|ref|ZP_05594153.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis AR01/DG]
 gi|257158987|gb|EEU88947.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis ARO1/DG]
          Length = 529

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/546 (20%), Positives = 218/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ LA   S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLADEDSRQDLVDTLVDTLSYDIEPDYLFNSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLATEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|297582533|ref|YP_003698313.1| type I restriction-modification system, M subunit [Bacillus
           selenitireducens MLS10]
 gi|297140990|gb|ADH97747.1| type I restriction-modification system, M subunit [Bacillus
           selenitireducens MLS10]
          Length = 531

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/557 (19%), Positives = 220/557 (39%), Gaps = 69/557 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------------PT 51
           A L   ++  A++L      +++   +L     + L   L                    
Sbjct: 3   AELNAKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLIKVVELADESLDTYDTPDK 62

Query: 52  RSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
           ++ + E+ L+   +  DL  + V   GY       +++    +       N  N     +
Sbjct: 63  QTELYEELLSDKDTKEDLIATVVDTLGYDIEPPHLFNVLAEQAKKNVFQLNDLNKAFIQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           ++  D    +F+D D  S        ++   +  + K  + ++L        V+ + YE+
Sbjct: 123 STKYDAFSGLFDDVDLQSKKLGSDDQQRNVTVTDVIKKLNDVDLI--GYEGDVIGDAYEY 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  + + ++    +           +++DPT G+G  + 
Sbjct: 181 LIGQFASEAGKKAGEFYTPHMVSDMMSQIVAIGQED------KKWFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  ++ +  R     ++ G T
Sbjct: 235 NVRNYL-------NHPDKVKYHGQELNTTTFNLAKMNLILHGVDPEEMR-----VRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     F+
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADDTFLD----DSRFNRYGK-LAPKSKADFAFV 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----ETGTMAIVLPHGILFRGAA---EGTIRQKLLEDGSIYAVIGMPPNLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   ++      V  I+A+  +   +N    +  ++ +   +++D Y  R
Sbjct: 391 GTSIPTTVLILKKNRSTR---DVLFIDASRDFIKGKN----QNKLSKENIEKVVDTYNKR 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E+  K++ +  +         +  P  +    ++  +         +++    Q+    +
Sbjct: 444 ESVEKYAHLATFEEIKENDYNLNIPRYVDTFEEEEPVDMKAVGTEMKEIQEKKQALQKSL 503

Query: 519 LKPMMQQIYPYGWAESF 535
            + +    Y    AE  
Sbjct: 504 FEDISSLQYSEEDAEWI 520


>gi|91775573|ref|YP_545329.1| type I restriction-modification system, M subunit [Methylobacillus
           flagellatus KT]
 gi|91709560|gb|ABE49488.1| type I restriction-modification system, M subunit [Methylobacillus
           flagellatus KT]
          Length = 540

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/547 (20%), Positives = 199/547 (36%), Gaps = 71/547 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MTE       L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTES--EKQKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGTDY 58

Query: 59  -----------------YLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGST----- 94
                               +  +  D+  F K      +     +Y    +        
Sbjct: 59  PDLPSDVLRQTGVNTPLQAWYEENLDDVSEFEKQMRRKVHYVIEPQYLWGNIAEMARTQD 118

Query: 95  ----NTRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LH 146
               +T      YI   SF+   + +F + + +S            ++CK  + I   L 
Sbjct: 119 DELLHTLQKGFKYIEEESFASTFRGLFSEINLASDKLGKTYTERNARLCKIIAEIAKGLG 178

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +     + + YE+LI +F +   + A +F TP+ +  + +A++              +
Sbjct: 179 QFSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHL 238

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-- 264
            +++D  CG+G  L +    +   G       I   +GQE    T+ +    ML+  +  
Sbjct: 239 DSVFDFACGSGSLLLNVRRLMGPHG-------IGKIYGQEKNITTYNLARMNMLLHGVKD 291

Query: 265 -ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            E +     +   +       +     +F   ++NPPF  +WE  +         GE  R
Sbjct: 292 SEFEIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEAL-------GEDVR 344

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL
Sbjct: 345 FKNYGLAPKSAADFAFLLHGFHFLK----QDGVMAIILPHGVLFRGGA---EARIRTKLL 397

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++ 
Sbjct: 398 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFER----GKRQN 450

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLE 499
            +  +   +I+D Y  R E  ++SR +           + + R +  +   ++  L  + 
Sbjct: 451 QLLPEHIDKIIDTYRYRKEEPRYSRRVSMEEIEKNDFNLNISRYVSTAITEEEVDLNAVI 510

Query: 500 ADITWRK 506
             +   +
Sbjct: 511 GQLKAIE 517


>gi|328675904|gb|AEB28579.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida 3523]
          Length = 495

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/531 (20%), Positives = 199/531 (37%), Gaps = 50/531 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---L 60
              +   +   +W   +   G      +   IL    ++ L    +  +  + E+Y    
Sbjct: 2   QKTTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSERYNGDE 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                 +  E F      +F                   L+            IF   DF
Sbjct: 62  KRIERALSREKFTLDDSCTFDYLYANKDKENLGEIINAALDRIEEDNPQKLTGIFRGVDF 121

Query: 121 SSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
           +         ++  +L  + K+F+   + L P  +  + V+ + YE+LI  F S+  +  
Sbjct: 122 NDAKSLGDTKDRNSILKNLLKDFNNPKLNLSPSKLEGNDVIGDSYEYLIANFASDSGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  V  L   L+                 +YDPTCG+G  L  A   +       
Sbjct: 182 GEFFTPSQVSSLLAMLV----------QAKEGDEIYDPTCGSGSLLIKAAKEIGSNN--- 228

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +GQE    TH++C   M +  +  D    L   I+    L  D    K+F  
Sbjct: 229 -----FAIYGQERNSTTHSLCRMNMFLHDIN-DANIQLGDTIRNPRILENDKL--KKFDV 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF        D       +    RF  G+P  S G   F+ H+   L    N  G
Sbjct: 281 VVANPPFSLDKWGADDVT-----SDVYSRFEFGIPPKSKGDYAFIQHMLASL----NESG 331

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I   + +   +K
Sbjct: 332 RMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPACIMVFKKQK 388

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
                  V  I+A++ +   +N    +  + DD  ++I D Y SRE+  K+S +      
Sbjct: 389 ---DSNDVLFIDASNEFEKGKN----QNKLTDDNIKKIFDTYKSRESLEKYSHVAKLDEI 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +  P  +    ++  +       T  +L    ++    + + + +
Sbjct: 442 KENDYNLNIPRYVDTFEEEEPVDIEATKQTIAELEAKREALKTKMAEYLKE 492


>gi|146321640|ref|YP_001201351.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 98HAH33]
 gi|253752459|ref|YP_003025600.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|253754285|ref|YP_003027426.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|145692446|gb|ABP92951.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 98HAH33]
 gi|251816748|emb|CAZ52390.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|251820531|emb|CAR47286.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|292559063|gb|ADE32064.1| Type I restriction-modification system M subunit [Streptococcus
           suis GZ1]
 gi|319758863|gb|ADV70805.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis JS14]
          Length = 529

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 108/547 (19%), Positives = 212/547 (38%), Gaps = 79/547 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------PTRS 53
            + +  ++ N IW  A +L G+   +++   IL F   R L    E          P   
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 54  AVREKYLAFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
              +   A      DL   ++      GY+      ++       N+      Y   F  
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 109 ------------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                       ++ + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVVRAKSLNSIVKLIDSIEYKNDEGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++      L  E      ++YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT-----LGLEKSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+ T I T + +    +   +   V  I+A+  +   +N    +  +
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNR---QTKDVFFIDASKEFEKGKN----QNHL 443

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +DD   +I++ Y +R++  K++ +            + + R +      ++  L ++   
Sbjct: 444 SDDMVEKIVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQ 503

Query: 502 ITWRKLS 508
           +   +L 
Sbjct: 504 LEQDRLE 510


>gi|308062171|gb|ADO04059.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Cuz20]
          Length = 529

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 126/567 (22%), Positives = 212/567 (37%), Gaps = 80/567 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  --EPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
             E  +      Y        +   E  ++  G+ F   S    + L +     +L   +
Sbjct: 61  NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGF-FIPPSALFCNVLKNAPHNEDLNVTL 119

Query: 105 ASF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPD 148
            +               +N K +F D D +S     +   +   L KI +   G++L   
Sbjct: 120 QNIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDY 179

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K       
Sbjct: 180 QKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK------- 232

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      + D              GQE+   T+ +C   M +  +   
Sbjct: 233 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYS 285

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL        + F   +SNPP+  KW  D + +    K     RF P
Sbjct: 286 K-----FHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPILINDK-----RFSP 335

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +   + F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ 
Sbjct: 336 AGVLAPKNAADLAFTMHMLSYL----SNTGTCAIVEFPGVLYRGNA---EAKIREHLVKE 388

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           ++I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  +
Sbjct: 389 NVIDCVIALPDNLFFGTSIATCILVLKKNKPDDT---TLFIDASKEFVK----EGKKNKL 441

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEAD 501
            +  R +IL  Y  R+  K FS + +            V R +      +   +  L  +
Sbjct: 442 KEHNREKILQTYTERKTIKHFSALANMEKIKENDYNLSVNRFVEQEDTKEIIDIKALNGE 501

Query: 502 ITW--RKLSPLHQSFWLDILKPMMQQI 526
           I+    K S L  S  L I +    Q 
Sbjct: 502 ISQIVEKQSALRNSLELIIKELEEGQN 528


>gi|302024399|ref|ZP_07249610.1| type I restriction-modification system, M subunit [Streptococcus
           suis 05HAS68]
 gi|330833400|ref|YP_004402225.1| type I restriction-modification system, M subunit [Streptococcus
           suis ST3]
 gi|329307623|gb|AEB82039.1| type I restriction-modification system, M subunit [Streptococcus
           suis ST3]
          Length = 529

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 108/547 (19%), Positives = 212/547 (38%), Gaps = 79/547 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------PTRS 53
            + +  ++ N IW  A +L G+   +++   IL F   R L    E          P   
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 54  AVREKYLAFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
              +   A      DL   ++      GY+      ++       N+      Y   F  
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 109 ------------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                       ++ + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++      L  E      ++YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT-----LGLEKSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVSYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+ T I T + +    +   +   V  I+A+  +   +N    +  +
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNR---QTKDVFFIDASKEFEKGKN----QNHL 443

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +DD   +I++ Y +R++  K++ +            + + R +      ++  L ++   
Sbjct: 444 SDDMVEKIVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQ 503

Query: 502 ITWRKLS 508
           +   +L 
Sbjct: 504 LEQDRLE 510


>gi|315648620|ref|ZP_07901717.1| type I restriction-modification system, M subunit [Paenibacillus
           vortex V453]
 gi|315275999|gb|EFU39347.1| type I restriction-modification system, M subunit [Paenibacillus
           vortex V453]
          Length = 530

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 223/568 (39%), Gaps = 69/568 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---------- 58
           A L + ++  A++L      +++   +L     + L   L      + ++          
Sbjct: 2   AELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESKEEYNTQEK 61

Query: 59  -------YLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   LA      DL ++ V   GY       +++ T  +       N  N     +
Sbjct: 62  QTQLYRSLLADKEVEKDLIDTLVDTLGYDIGPDYLFNVLTNQAKQNIFQLNDLNKAFIDL 121

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           ++  D    +F+D D +S     +   +   + ++ K  + I++        ++ + YE 
Sbjct: 122 STKYDQFNGLFDDVDLTSKKLGSDDQQRNITITEVLKKLNDIDVIGHN--GDIIGDAYEF 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  + 
Sbjct: 180 LISQFASEAGKKAGEFYTPHEVSDMMARIATIGQED------KKLFSVFDPTMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ G T
Sbjct: 234 NVRNYL-------NHPDNVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   L NPP+   W  D   ++    +    R+G  L   S     FL
Sbjct: 282 LNKDWPTDEPYTFDSVLMNPPYSANWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFL 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LF+
Sbjct: 337 LHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFY 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +T      V  I+A+  +T ++N    +  ++++   +I++ Y  R
Sbjct: 390 GTSIPTTVIILKKNRTTR---DVLFIDASHEFTKVKN----QNNLSEEHIDKIVETYKRR 442

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           EN  +++ +  +         +  P  +    ++  +         + +    +     +
Sbjct: 443 ENVERYAHVATFEKIKENDFNLNIPRYVDTFEEEESIDMASIGREIQDIRKEKEKLESSL 502

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
              +    +    AE         N  K
Sbjct: 503 FDMISSLQHDEENAEWIKGALEVFNRGK 530


>gi|219871811|ref|YP_002476186.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
 gi|219692015|gb|ACL33238.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
          Length = 537

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/537 (20%), Positives = 201/537 (37%), Gaps = 72/537 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTQ--EQLNQLGKTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGRDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLG-----------S 93
                        + +  +      F K      +     EY   ++            S
Sbjct: 59  PQLSNDDKRTPLAVWYQENADFTADFEKQMRRKVHYVIKPEYLWGSIAELARVQSTELLS 118

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T  +        SF      +F + + +S            K+ +    I   +   +  
Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNSEKLGKSYTERNNKLAEIVKRIAEGISEFSAD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F S   + A +F TP+ V  + + ++              + ++ D
Sbjct: 179 SDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKRKKLDSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +A+ G H         +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHQMAENGGHIG-----KIYGQEKNITTYNLARMNMLLHGV-----KD 288

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G +L  D              F   ++NPPF  +W+       KE    +   
Sbjct: 289 TEFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDP------KEDLANDFRF 342

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            G GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR+ LL 
Sbjct: 343 NGYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRKKLLN 395

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+A++ LP +LF+ T I   + +L   K E+    +  INA D +      GK++  
Sbjct: 396 DGNIDAVIGLPANLFYSTGIPVCILVLKKCKKED---DILFINAADAFEK----GKRQNR 448

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR 497
           + D+   +I++ Y  R+  + +++ +  +        + + R +  + + ++  LA 
Sbjct: 449 LTDEHIAKIIEHYQYRKETQGYAKRISVQEIEDNDYNLNIARYVNNTAVEEEIDLAA 505


>gi|210135043|ref|YP_002301482.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210133011|gb|ACJ08002.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 527

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/557 (22%), Positives = 215/557 (38%), Gaps = 72/557 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVR 56
           + +     L N IWK A +L G     DF + +L     R +   +      E  +    
Sbjct: 9   QASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKRDPS 68

Query: 57  EKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             Y        +   E  ++  G+ F   S    + L +  +  +L   + +        
Sbjct: 69  FDYAKLSDEEAERAREHLIEEKGF-FIPPSALFCNALKNAPSNEDLNVTLQNIFNEIEKS 127

Query: 108 ------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                  +N K +F D D +S     +   + G L KI +   G++L         V  +
Sbjct: 128 SLGTPSEENVKGLFADLDVNSNKLGSSHKNRVGKLTKILQAIGGMQLGDYLKSGIDVFGD 187

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G
Sbjct: 188 AYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHGQESVNK--------VYDPCCGSG 239

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      + D              GQE+   T+ +C   M +  +          +I 
Sbjct: 240 SLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIA 288

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL        + F   +SNPP+  KW  D   +    +     RF P   L   +  
Sbjct: 289 HGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNSPLLINDE-----RFSPAGVLAPKNAA 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP
Sbjct: 344 DLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL 
Sbjct: 397 DNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLKERNREKILQ 449

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITW--RKLSP 509
            Y+ R E   F  + +            V R +      +   +  L ++I+    K S 
Sbjct: 450 TYIERKEIKHFCALANIERIKENDYNLSVNRYVEQEDTKEIIDIKALNSEISQIVEKQSA 509

Query: 510 LHQSFWLDILKPMMQQI 526
           L  S  L I +    Q 
Sbjct: 510 LRNSLELIIKELEGGQN 526


>gi|167856382|ref|ZP_02479108.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis 29755]
 gi|167852488|gb|EDS23776.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis 29755]
          Length = 537

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 200/537 (37%), Gaps = 72/537 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTQ--EQLNQLGKTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGRDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLG-----------S 93
                        + +  +      F K      +     EY   ++            S
Sbjct: 59  PQLSNDDKRTPLAVWYQENADFTADFEKQMRRKVHYVIKPEYLWGSIAELARVQSTELLS 118

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T  +        SF      +F + + +S            K+ +    I   +   +  
Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNSEKLGKSYTERNNKLAEIVKRIAEGISEFSAD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F S   + A +F TP+ V  + + ++              + ++ D
Sbjct: 179 SDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKKKKLDSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +  + +A+ G H         +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRHQMAENGGHIG-----KIYGQEKNITTYNLARMNMLLHGV-----KD 288

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G +L  D              F   ++NPPF  +W+       KE    +   
Sbjct: 289 TEFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDP------KEDLANDFRF 342

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            G GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR+ LL 
Sbjct: 343 NGYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRKKLLN 395

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+A++ LP +LF+ T I   + +L   K E+    +  INA D +       K++  
Sbjct: 396 DGNIDAVIGLPANLFYSTGIPVCILVLKKCKKED---DILFINAADAFEK----SKRQNR 448

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR 497
           + D+   +I++ Y  R+  + +++ +  +        + + R +  + + ++  LA 
Sbjct: 449 LTDEHIAKIIEHYQYRKETQGYAKRISVQEIEDNDYNLNIARYVNNTAVEEEIDLAA 505


>gi|223934049|ref|ZP_03626001.1| type I restriction-modification system, M subunit [Streptococcus
           suis 89/1591]
 gi|223897276|gb|EEF63685.1| type I restriction-modification system, M subunit [Streptococcus
           suis 89/1591]
          Length = 529

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 109/547 (19%), Positives = 214/547 (39%), Gaps = 79/547 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTR 52
            + +  ++ N IW  A +L G+   +++   IL F   R L    E              
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
             V++ Y+     N  +E     A   GY+      ++       N+      Y   F  
Sbjct: 61  ETVQDAYVREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 109 ------------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                       ++ + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++      L  E      ++YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVT-----LGLEKSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVSYS-----N 282

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    TL  D   G         + F   ++NPP+  KW+ ++++  K+ +  E G+ 
Sbjct: 283 MILNNADTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKL 341

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 342 APA----SKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEK 390

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+ T I T + +    +   +   V  I+A+  +   +N    +  +
Sbjct: 391 NYLDAVIGLPANLFYGTGIPTTILVFKKNR---QTKDVFFIDASKEFEKGKN----QNHL 443

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +DD   +I++ Y +R++  K++ +            + + R +      ++  L ++   
Sbjct: 444 SDDMVEKIVETYHNRQSVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQ 503

Query: 502 ITWRKLS 508
           +   +L 
Sbjct: 504 LEQDRLE 510


>gi|304387862|ref|ZP_07370036.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338127|gb|EFM04263.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 514

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 118/532 (22%), Positives = 205/532 (38%), Gaps = 70/532 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+K      K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTKPKLKDSKPFDAVVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDASSFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSREN-GKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +    ++       +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKADVPHIAQNAAQQTIKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEIS 492


>gi|312136020|ref|YP_004003358.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor owensensis OL]
 gi|311776071|gb|ADQ05558.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor owensensis OL]
          Length = 514

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 113/563 (20%), Positives = 212/563 (37%), Gaps = 81/563 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           M +      + A+ +W  A+ L  + + +++  ++L    L+ +  A +  +  +     
Sbjct: 1   MGQNNDGVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRQEELEYLIK 60

Query: 57  ----EKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
               E+Y         L   +    +A   FY   E     + +    N   S I    D
Sbjct: 61  DPKNEEYYCGSEEEAQLILEDKDEYMAANVFYVPPEARYEYIMA----NARRSDIGKLID 116

Query: 110 NAKAIFEDFDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +A  + E  +       L K           L +I      I          V+  +YE+
Sbjct: 117 DAMDLIEKENPKQLRGVLPKVYTKAPLDPHTLGEIVNLIGSINFG-KNEELDVLGRVYEY 175

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +  F  +  +   +F TP  VV L   ++             +   ++DP CG+GG   
Sbjct: 176 FLSEFARKEGKRGGEFFTPSSVVKLLVEMIQP-----------LHGRVFDPCCGSGGMFV 224

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            ++  V    +H      +  +GQE  P T+ +C   + IR +E+D         + G++
Sbjct: 225 QSIRFVE---AHAGKKGDISIYGQESNPTTYRLCKMNLAIRGIEADI--------RLGNS 273

Query: 282 LSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            + D F   R  Y L+NPPF    W  D+ A +         R+  GLP  S+ +  ++ 
Sbjct: 274 FTDDQFKDLRADYILANPPFNDSAWGADRLANDV--------RWKYGLPPDSNANYAWIQ 325

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L       G A  VL++  +    + + E EIR+ ++E++L++ +VALP  LF+ 
Sbjct: 326 HFIYHL----APKGVAGFVLANGSMTT--SNNAEYEIRKRIIEDNLVDCMVALPPQLFYT 379

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I   LW +   +  +   +   I+A  +   +    +  R + D++ ++I + Y +  
Sbjct: 380 TGIPACLWFIRKGRETK---ETLFIDARKMGVMV---DRTHRELTDEEIQKIAETYHNWR 433

Query: 461 N-------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-RKLSPLHQ 512
           N         F   +           VL P R   + D       E DI +  K++ L +
Sbjct: 434 NKSGYEDLKGFCASVPMEVIAQNDY-VLAPGRYVGVEDTQ-----EDDIPFEEKMAELTE 487

Query: 513 SFWLDILKPMMQQIYPYGWAESF 535
             +  + +            E  
Sbjct: 488 KLYQQMKEARRLDEIIKANLEEL 510


>gi|134045655|ref|YP_001097141.1| type I restriction-modification system, M subunit [Methanococcus
           maripaludis C5]
 gi|132663280|gb|ABO34926.1| type I restriction-modification system, M subunit [Methanococcus
           maripaludis C5]
          Length = 494

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/531 (21%), Positives = 206/531 (38%), Gaps = 50/531 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + A++   +WK  +   G      +   IL    ++ L    +      +EKY    
Sbjct: 1   MKTNQATINAILWKACDTFRGTINSDQYKDYILTMLFVKYLSDYYKEKLEEYKEKYGDKE 60

Query: 64  GSNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                    E F+     +F    +   +        + LE          + +F + DF
Sbjct: 61  DRIQKSLSREKFILDESCTFEYIYKNRNAENLGEIINSALERIEEDNKAKLEGVFRNIDF 120

Query: 121 SSTI---ARLEKAGLLYKICKNFSG--IELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGA 174
           +S        E+  LL  +  +F+   ++L P     + V+ + YE++I  F S+  +  
Sbjct: 121 NSEAMLGKTKERNALLKHLLDDFNDPKLDLRPSKLAGNDVIGDSYEYMIAYFASDAGKKG 180

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  V  L   L+          SP     +YDPTCG+G  L  A   V D     
Sbjct: 181 GEFFTPSQVSRLVAKLV----------SPKSGNRIYDPTCGSGSLLIKASKEVPDNN--- 227

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +GQE   +T+A+C   M +  ++ D + +    I+    L  D  +  +F  
Sbjct: 228 -----FQIYGQEKNGQTYALCRMNMFLHEID-DAKIEWGDTIRNPLHLEND--SLMKFDV 279

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF      D  A     +N    RFG G+P  S G   F+ H+        N  G
Sbjct: 280 VVANPPFSLDKWGDDYA-----ENDPYKRFGYGIPPKSKGDYAFVEHMVYS----ANENG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              +VL    LF G +   E +IR  L+ ++ ++A++ LP +LFF T I   + +    K
Sbjct: 331 TVGVVLPHGVLFRGAS---EGKIREGLINDNYLDAVIGLPQNLFFGTGIPACILVFKKNK 387

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
                  V  I+A+  + S +N    + ++ D    +I++ Y +R++  K+S +      
Sbjct: 388 I---TNDVIFIDASKEFESGKN----QNVLRDLDIEKIVETYKNRQDIEKYSHVASLEEI 440

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +  P  +    ++  +   +      K+    +    ++ K + +
Sbjct: 441 RENDYNLNIPRYVDTFEEEEPVDLNQVKTDISKIEGELKDIQKEMDKYLDE 491


>gi|21228300|ref|NP_634222.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906762|gb|AAM31894.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 505

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 103/505 (20%), Positives = 189/505 (37%), Gaps = 54/505 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +     +WK A+ L  +    ++  ++L    LR +  A E     +++    + G++ +
Sbjct: 2   SDFEKQLWKAADKLRKNIDAAEYKHIVLGLIFLRYISDAFEELYEKLQQGEGEYAGADPE 61

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFS 121
                K A   F+  +      L S   +       +N    I   +   + +       
Sbjct: 62  DRDEYK-AENVFFVPAISRWPYLQSEAKKPDIGKSVDNAMDAIEKENPLLRGVLPKVFAR 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             +        L  +    S + L    +    V+ +++E+ +  F     +    F TP
Sbjct: 121 GNL----DPTNLGGLIDLVSNVALGDAKSRSADVLGHVFEYFLGEFALAEGKKGGQFYTP 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L   +L   +             ++DP CG+GG    +   VAD   H      +
Sbjct: 177 RSVVELLVEMLEPYNG-----------RVFDPCCGSGGMFVQSEKFVAD---HQGKINDI 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE    T  +    + IR ++S   +  ++      +   D+    +  Y ++NPP
Sbjct: 223 SIYGQESNQTTWRLAKMNLAIRSIDSSQVKWNNEG-----SFLNDVHKDLKADYVIANPP 277

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F        D + K+      GR+  G+P   + +  ++ H    L       G+A  VL
Sbjct: 278 FNDSDW-SGDLLRKD------GRWKYGVPPAGNANYAWIQHFLYHL----GPSGQAGFVL 326

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----E 416
           +   L +    SGE +IR+ L+E  L++ IV LP  LF  T I   LW LS  K      
Sbjct: 327 AKGSLTSKS--SGEGDIRKELVEARLVDCIVNLPPKLFLNTQIPASLWFLSRNKANGKHR 384

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
            R  ++  I+A ++   I    ++ R  + +  +QI   Y    N +     D + F   
Sbjct: 385 NRTDEILFIDARNMGHLI---NRRTREFSPEDIQQIAGTYHKWRNPEG-NYEDVKGF-CN 439

Query: 477 RIKVLRPLRMSFILDKTGLARLEAD 501
              + R   + ++L       L  D
Sbjct: 440 SAPIERVRELGYVLTPGRYVGLPDD 464


>gi|332285463|ref|YP_004417374.1| Type I restriction-modification system, M subunit [Pusillimonas sp.
           T7-7]
 gi|330429416|gb|AEC20750.1| Type I restriction-modification system, M subunit [Pusillimonas sp.
           T7-7]
          Length = 520

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 190/487 (39%), Gaps = 66/487 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65
             +   +W  A+ L  +    ++  ++L    ++ +  +    R+A+ +++   G     
Sbjct: 3   QDIKKTLWAAADKLRANMDAAEYKHLVLGLIFVKYISDSFAAHRAALTKRFADQGDDYVL 62

Query: 66  -NID--------LESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSD 109
            + D         E     A   F+         L +   +       ++  + I + + 
Sbjct: 63  PDADEALIASELEERDYYTAANIFWVPEAARWEALRAAAKQPDIGKRIDDALTAIEAENP 122

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGS 168
             K I +     + +      G L ++    S I    D      ++  +YE+ + +F S
Sbjct: 123 KLKGILDKRYGRAQLP----DGKLGELVDMISTIGFGGDANTARDILGQVYEYFLGQFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TP  +V+   A+L                 +YDP CG+GG    +   + 
Sbjct: 179 AEGKKGGQFYTPASIVNTLVAVLAPHKGQ-----------VYDPCCGSGGMFVQSEKFIE 227

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G +      +  +GQE  P T  +    + IR +      D +   +   T +++   
Sbjct: 228 AHGGNIG---DVSIYGQESNPTTWRLAAMNLAIRGI------DFNLGKEPADTFTRNQHP 278

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             R  + L+NPPF    W       +         R+  G P   + +  +L H+ + L+
Sbjct: 279 DLRADFILANPPFNISDWWHGSLEGD--------PRWQYGDPPKGNANYAWLQHMLHHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + + +  + E  IR  +++ D++E ++ALP  LFF T I   L
Sbjct: 331 ----PTGRAGIVLANGSMSSSQ--NNEGVIRAAMVDADVVEVMIALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFS 465
           W L+ +K  +R+G+V  I+A  +   I    + +  ++D    +I +   +   E    +
Sbjct: 385 WFLAKQK--KRKGEVLFIDARKMGRMI---SRVQAELDDAAITRIAETVAAWRGEVEDGA 439

Query: 466 RMLDYRT 472
            + +Y+ 
Sbjct: 440 TITEYQD 446


>gi|328545367|ref|YP_004305476.1| Type I restriction-modification system, M subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326415109|gb|ADZ72172.1| Type I restriction-modification system, M subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 505

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/508 (22%), Positives = 194/508 (38%), Gaps = 51/508 (10%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESF 72
           W   +   G      +   IL    L+ +           R +Y    A     ++ E F
Sbjct: 15  WAACDTFRGAVDAGQYKDYILVMLFLKYISDLWNDHVETYRNQYGGDEARIRRRLERERF 74

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEK 129
           +   G SFY+                 LE    +     + +F + DF+S        ++
Sbjct: 75  ILPEGASFYDLYAQRNEANIGELINIALEKIEDANRAKLEGVFRNIDFNSEANLGRPKDR 134

Query: 130 AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A +F TP  V  L 
Sbjct: 135 NRRLKNLLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGEFYTPTAVSRLL 194

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L           +P    T+ DP CG+G  L  A   V               +GQE+
Sbjct: 195 AKLA----------APQPGNTICDPACGSGSLLIQASQEVGSEN--------FALYGQEV 236

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T A+    M +   ++     +       S    +     RF   L+NPPF      
Sbjct: 237 NGATWALARMNMFLHAKDA---ARIEWCDTLNSPALVEGDHLMRFDVVLANPPFSLDKWG 293

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            ++A      +    RF  G+P  S G   F+ H+    E+     GR A+++    LF 
Sbjct: 294 AENAA-----SDPYNRFWRGIPPRSKGDYAFITHMI---EIARRQSGRVAVIVPHGVLFR 345

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQ 423
           G A   E  IR+ L+E +L++A+V LP +LF  T I   + I    + E      R  V 
Sbjct: 346 GGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAILIFDRSREEGGANAGRRDVL 402

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKV 480
            I+A+  +T     GK + ++++    ++L+ Y SR E  +F+              + +
Sbjct: 403 FIDASKEFTP----GKTQNVMDEAHVAKVLETYRSRAEVPRFAHRASPEEIAENGYNLNI 458

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLS 508
            R +      ++  +A ++ DI   +  
Sbjct: 459 PRYVDTFEPEEEIDVAAVQKDIQRIEAE 486


>gi|325144135|gb|EGC66442.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240013]
 gi|325203906|gb|ADY99359.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240355]
 gi|325206332|gb|ADZ01785.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M04-240196]
          Length = 513

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 120/532 (22%), Positives = 204/532 (38%), Gaps = 72/532 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGS-------TNTRNNLESYIASFS 108
           Y A   S I  E     VKV GY  Y    +      +       TN +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNVAAKAHQNEELNTNLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F+DFD +S+       +K   L  + K  + ++    +     +  + Y
Sbjct: 120 GYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNQ-----FHIELG 280

Query: 280 STLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       K F   +SNPP+   W    D            RF P   L   S    
Sbjct: 281 DTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++    I+ ++
Sbjct: 389 LFYGTGIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLTEEHIADIVKLF 441

Query: 457 VSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
             + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 442 ADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEI 490


>gi|88856340|ref|ZP_01130999.1| type I restriction-modification system methylation subunit [marine
           actinobacterium PHSC20C1]
 gi|88814424|gb|EAR24287.1| type I restriction-modification system methylation subunit [marine
           actinobacterium PHSC20C1]
          Length = 507

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/458 (22%), Positives = 183/458 (39%), Gaps = 45/458 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFG-G 64
           +   L + +W  A  L G     DF   + P    + +  + +   R AV +   A    
Sbjct: 12  TQRQLESALWSAANALRGPVDAGDFKSFVFPVMFFKWISDSWDFQHRQAVSDFGDALTPE 71

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              D   F+      + +  + +++T   +     L     +       +F D ++S+T 
Sbjct: 72  IEADYHPFLIPDECHWNDVYDVTVNT--GSKLGKTLLRIQEANPGKLDGVFGDVNWSNT- 128

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL ++ L  K+   F  + L P+     ++   YE+L+R F     + A +F TPR VV
Sbjct: 129 DRLPESALT-KLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGKKAGEFFTPRHVV 187

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL   LL           P    ++ DP CG+ G L + +N V   G   +    L  +G
Sbjct: 188 HLLVKLL----------QPQSGDSVCDPACGSAGMLVETVNAVDASGGDSRT---LTLYG 234

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNP 299
           QE    T A+    + +   ES         I +G T  +          ++F   ++NP
Sbjct: 235 QEFNLTTAAMARMNLYLHGQES-------FQIMRGDTFREPKLLDEAGQLRKFDVVIANP 287

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  +        +   ++      G  +P  ++G   ++ H+ + ++   +  GRA I+
Sbjct: 288 PFSLRNWG----ADMWARDPYKRAIGGEVPPPANGDWAWIQHMVSTIK---DDTGRAGII 340

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF    G  E+ IR   +   L+EA++ LPT+LF+ T+I   + I    K  ER 
Sbjct: 341 MPHGALFR---GGKEAAIREHFVRTGLLEAVIGLPTNLFYSTSIQVCILIFRKNKLAERV 397

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            KV  I+A  L     N    +  ++      I   Y 
Sbjct: 398 NKVMFIDAKSLSVPGTN----QNTMSVANIEAIDSAYK 431


>gi|323700559|ref|ZP_08112471.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. ND132]
 gi|323460491|gb|EGB16356.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 540

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/550 (21%), Positives = 205/550 (37%), Gaps = 78/550 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MTE       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTESNQKR--LGQILWDIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEQAAKKELGKDY 58

Query: 60  ---------------LAFGGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRNNL 100
                          + +  +  D+ +F K       Y       ++     +    + L
Sbjct: 59  PDPNAVDNGGRTPLSVWYDNNPGDIAAFEKQMRRKAHYVIKPDHLWTNIAYMAKTQNDEL 118

Query: 101 ESYI---------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDT 149
            + +          SF      +F + +  S            K+C   + I   L   T
Sbjct: 119 LNTLQEGFKYIENESFESTFSGLFSEINLGSEKLGKTYQNRNDKLCTIITKIADGLADFT 178

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                + + YE+LI +F +   + A +F TP+ +  + +A++              + ++
Sbjct: 179 TDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDGQDPKTGPRKKLASV 238

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D  CG+G  L +  + + + G         + +GQE    T+ +C   ML+  +     
Sbjct: 239 MDFACGSGSLLLNVRHKMVNAGGSVG-----MIYGQEKNITTYNLCRMNMLLHGV----- 288

Query: 270 RDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +D    I  G TL+ D    +         F   ++NPPF  +W       E     GE 
Sbjct: 289 KDSEFEIFHGDTLTNDWDKLREQNPAKKPTFDAVVANPPFSYRW-------EPNEALGED 341

Query: 322 GRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            RF   GL   S     FL+H  + L+      G  AI+L    LF    G  E+ IRR 
Sbjct: 342 MRFKNYGLAPKSAADFAFLLHGFHYLK----DEGVMAIILPHGVLFR---GGKEAAIRRK 394

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  I+ ++ LP +LF+ T I   + +L   K  +    V +INA + +      GK+
Sbjct: 395 LLEDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLIINAAEHFEK----GKR 447

Query: 441 RRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +  +N +   +I+D Y  R  +  +++R +  +        +       ++        +
Sbjct: 448 QNYLNAEHIDKIIDTYQQRPEKIERYARSVGLKEIRDNDYNLNI---SRYVSTAEQEPEI 504

Query: 499 EADITWRKLS 508
           +   T  KL 
Sbjct: 505 DLKATHDKLV 514


>gi|220930107|ref|YP_002507016.1| type I restriction-modification system, M subunit [Clostridium
           cellulolyticum H10]
 gi|220000435|gb|ACL77036.1| type I restriction-modification system, M subunit [Clostridium
           cellulolyticum H10]
          Length = 525

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 110/553 (19%), Positives = 212/553 (38%), Gaps = 67/553 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVREK----- 58
           + L N +W +A+ L G    +++   +L     + L         E     V E      
Sbjct: 2   SDLNNQLWASADILRGKMDASEYKNYLLGLIFYKYLSDQELRAVYEEEHGKVSEYPNRHD 61

Query: 59  -----YLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                   +   + D++        +  V  Y FY   + +       +   N    +  
Sbjct: 62  QLAGLLEWYKEDSADVKDIISKKLGYFIVPDYLFYTLRKKADEYELQISDLQNAFIELGR 121

Query: 107 FSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             ++   +F+D D +ST       ++   + ++ K    I L        V+ + YE+LI
Sbjct: 122 QGNHFTGLFDDIDLTSTKLGANAQQRNITITEVIKALDEIYLFGH--DGDVIGDAYEYLI 179

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP+ V  + + ++    + +          +YDP  G+G  + + 
Sbjct: 180 GQFAAGAGKKAGEFYTPQTVSKIISEIVSIGQEEVAPFH------IYDPAMGSGSLMLNI 233

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V +    H        HGQEL   T+ +    +++  +E    R     ++ G TL 
Sbjct: 234 RQFVKNPWKVH-------YHGQELNTTTYNLARMNLILHNVEQSQMR-----LRNGDTLD 281

Query: 284 KDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           +D  + +   F+  + NPP+   W  D    +K   +    R+G  L   S     FL+H
Sbjct: 282 EDWPSDEPYLFNAVVMNPPYSANWSAD----DKFLSDPRFERYGK-LAPKSKADFSFLLH 336

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L    N  G   IVL    LF    G+ E  IR+ LLE   I+A++ LP ++F+ T
Sbjct: 337 GFYHL----NENGTMGIVLPHGVLFR---GASEGVIRKTLLEMGAIDAVIGLPANIFYGT 389

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
           +I T + I+   +    +  V  I+A+  +   +N    +  +  +  ++I+D Y  RE 
Sbjct: 390 SIPTTVLIMKKNRG---KRDVLFIDASKDFEKQKN----QNNLRKEDIQKIVDTYKKRES 442

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ + DY         +  P  +    ++  +  +        L+   +   ++ L 
Sbjct: 443 IHKYAHLADYDEIVRNEYNLNIPRYVDTFEEEVQIDIVALSNEMVDLNLQIKQKEMEFLG 502

Query: 521 PMMQQIYPYGWAE 533
            +       G  E
Sbjct: 503 LLDDLAITDGTRE 515


>gi|254786393|ref|YP_003073822.1| type I restriction-modification system, M subunit [Teredinibacter
           turnerae T7901]
 gi|237686117|gb|ACR13381.1| type I restriction-modification system, M subunit [Teredinibacter
           turnerae T7901]
          Length = 535

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 119/547 (21%), Positives = 207/547 (37%), Gaps = 76/547 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTK--EQLNQLGKTLWDIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGRDY 58

Query: 60  -------------LAFGGSNIDLESFVKVAGYS--------FYNTSEYSLSTLGSTNTRN 98
                        + +  +  D+  F K             F  +S   ++    T+  +
Sbjct: 59  PKPEKDDRRAPLAIWYQNNPADIADFEKQMRLKTHYVIEPAFLWSSVAEMARTQHTDLLD 118

Query: 99  NLES---YIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
            L     YI   SF+   + +F + +  S     + A    K+C     I   +   +  
Sbjct: 119 TLWKGFKYIEEKSFNSTFQGLFSEINLHSEKLGKKPADRNAKLCAIIQKIAEGISQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F +   + A +F TP+ +  + + ++              I+ + D
Sbjct: 179 TDILGDAYEYLIGQFAAGSGKKAGEFYTPQPISQILSEIVTLDSQEPATGKKKKIKQVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRKQLGPHG-------IGKIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D             +F   ++NPPF  +W   +         GE  R
Sbjct: 287 TEFEIHHGDTLENDWDILNEMNPAKKMQFDAVVANPPFSLRWSPTEAL-------GEDFR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L    +  G  AI+L    LF G A   E  IR  LL
Sbjct: 340 FKNYGLAPKSAADFAFLLHGFHFL----SDDGVMAIILPHGVLFRGGA---EERIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K   +   V  INA + +      GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKRCK---KSDDVLFINAAEHFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLE 499
            + D+   +I+D Y  R E  +++R +           + + R +  +   +K  LA++ 
Sbjct: 446 YLEDEHIAKIIDCYQFRKEEERYARRVPMDEIKKNDYNLNISRYVSTAKPEEKIDLAKVH 505

Query: 500 ADITWRK 506
             +   +
Sbjct: 506 NSLVDLE 512


>gi|85716964|ref|ZP_01047928.1| possible type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
 gi|85696243|gb|EAQ34137.1| possible type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
          Length = 499

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/520 (22%), Positives = 212/520 (40%), Gaps = 51/520 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L +++W  A  L G    +D+ + I P    +RL     E  + A+ E        
Sbjct: 5   TQRELESYLWGAATLLRGLIDASDYKQYIFPLMFFKRLSDVWDEDYQQALDETGDEGYAI 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           N   + FV   G ++ +          +    +   +  A+  +  + +F + +++   A
Sbjct: 65  NTANDRFVIPEGANWNDVRAAPRDVGRA--LLSAFLAIEAANPERLQGVFGNANWTDK-A 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++  + L   + ++FS  +L    VP+  + N YE+LI++F  +    A++F T R +VH
Sbjct: 122 QMPDSTLK-NLIEHFSKHDLTLAAVPEDELGNGYEYLIKKFADDSGHTAQEFYTNRTLVH 180

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L           P    ++YDPTCGTGG L   +  V   G   +       +GQ
Sbjct: 181 LMAQML----------EPQPGESIYDPTCGTGGMLISCLAEVKRRGGDIRTTG---LYGQ 227

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPF 301
           EL   T A+    ++I  ++         +I  G+TL+   F      + F   L+NPP+
Sbjct: 228 ELITITAAIARMNLVIHGVDD-------FHIASGNTLATPAFVQGDRLRTFDVVLANPPY 280

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K            +    GR   G P        F  H+ + +       GR AI+  
Sbjct: 281 SIKKWNRGA-----WEQDAWGRNFLGSPPQGRADYAFFQHILSSMHAKT---GRCAILFP 332

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF       E+E+RR L+E+D +E ++ L   LF+ + +   + I  ++K E R+G+
Sbjct: 333 HGVLFRNE----EAEMRRRLVESDRVECVLGLGPGLFYNSPMEACVVICRSQKPEARKGR 388

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT--FGYRRI 478
           +  I+A       R +      +  + + +IL  Y +  ++  F+ + D          +
Sbjct: 389 ILFIDAVAEIARERAQS----FLRPEHQARILSAYHAFADDPGFAAVADVADVLAADGNL 444

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            + R ++        G A L A  TW       + FW  +
Sbjct: 445 SIARYVKRP-KAAVAGGATLAA--TWAAFDEEGREFWTGM 481


>gi|228994625|ref|ZP_04154449.1| Type I restriction-modification system, M subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228765110|gb|EEM13840.1| Type I restriction-modification system, M subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 517

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 114/547 (20%), Positives = 211/547 (38%), Gaps = 73/547 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------E 57
              A L   +W  A DL G     +F   IL     R L   +E   +++         E
Sbjct: 9   QQQAELHKKLWAMANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFVE 68

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTR--NNLESYIAS-- 106
            +          E  +   GY       +S       L   G+ +     N   +I S  
Sbjct: 69  AWENDEYREDLQEYLINELGYVITPQYLFSTFVKEIELGANGNFDIEMLQNGVKFIESST 128

Query: 107 ----FSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                 ++ + +F+D D +S+        ++ L+ K+  N + I    D V   V+ + Y
Sbjct: 129 MGADSQEDFENLFDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAY 188

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E++I +F +   + A +F TP+ V  +   ++      +          +YD TCG+G  
Sbjct: 189 EYMISQFAANAGKKAGEFYTPQQVSRILAKIVTAGKTEIKD--------VYDGTCGSGSL 240

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                  +   +GQE    T+ +    ML+  +          +I+  
Sbjct: 241 LLRVGKEAK----------VYNYYGQEKVSTTYNLARMNMLLHDIPYQ-----RFDIKNA 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TL +     KRF   ++NPP+  KW  D    + E  +         L   S     F+
Sbjct: 286 DTLEEPQHLDKRFEAIVANPPYSAKWSADDKFQDDERFSNYAK-----LAPKSKADFAFV 340

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398
            H  + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F
Sbjct: 341 QHFIHHL----DDNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPGNIF 393

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + +   +K  +    V  I+A++ +   +N    +  ++DDQ  +I+D Y+S
Sbjct: 394 FGTSIPTCILVF--KKCRKHDDNVIFIDASNEFEKGKN----QNHLSDDQVEKIVDTYLS 447

Query: 459 RENGK---FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQS 513
           RE      ++  LD        + + R +      +   LA +   +     +++ + + 
Sbjct: 448 RETIDKYAYAATLDKIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLQAIDEEIAKVDEE 507

Query: 514 FWLDILK 520
                 +
Sbjct: 508 LAAYFKE 514


>gi|91773784|ref|YP_566476.1| type I restriction-modification system, M subunit [Methanococcoides
           burtonii DSM 6242]
 gi|91712799|gb|ABE52726.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 554

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 115/568 (20%), Positives = 209/568 (36%), Gaps = 105/568 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFGGSN 66
              L   +W  A +L G     +F   IL F   + L   +E     + +   +AF    
Sbjct: 6   KKQLEQQLWNIANELRGKMNADEFRDYILGFIFYKYLSNKIEIYADEILKPDGIAFKDIK 65

Query: 67  IDLE-----------SFVKVAGYSFYNTSEYSL--------------------------- 88
            D E           + V+  GY    +  +S                            
Sbjct: 66  EDTELGKEFIEAISEASVEKLGYFLKPSELFSEVARRGSSSYSASSGSSNYSNSSLSVEP 125

Query: 89  ------------STLGSTNTRNNLESYIASF---------SDNAKAIFEDFDFSSTIARL 127
                       S+ G      +L+  + +           D+ + +FED D +S+    
Sbjct: 126 FVTGQNAMAVAESSYGDEFILEDLQGILNNIQSSTMGTESEDDFENLFEDMDLNSSKLGK 185

Query: 128 E---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
               +  L+ K+  +   I+   +     V+ + YE+LI +F S   + A +F TP+ V 
Sbjct: 186 TPAARNALISKVLSHLDKIDFQLEHTELDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVS 245

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   L+      L        R++YDPTCG+G  L      V D         +   +G
Sbjct: 246 TILAKLVTTGKKRL--------RSVYDPTCGSGSLLLRVAREVED---------VSAFYG 288

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL   T+ +    M++  +          +I+Q  TL      G +F   ++NPPF  +
Sbjct: 289 QELNRTTYNLARMNMILHNVHYRK-----FDIKQEDTLEYPQHLGMQFEAIVANPPFSAQ 343

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  +      E +  + G+  P     S     F+ H+ + L       G  AIVL    
Sbjct: 344 WSANPLFSSDE-RFSQYGKLAP----KSKADYAFVQHMIHHL----AENGSMAIVLPHGV 394

Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I T + +   +K  E    + 
Sbjct: 395 LFRGAA---EGHIRQFLIEEKNYLDAVIGLPANVFYGTSIPTCVLVF--KKCRENPDDIL 449

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLR 482
            I+A+  +  +    K +  +      +I+D Y +R E  K+S +            +  
Sbjct: 450 FIDASQDYEKV----KTQNQLRPCDIDKIVDTYRNRKEIEKYSHVASLDEIKENDYNLNI 505

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPL 510
           P  +    ++  +       +  +L   
Sbjct: 506 PRYVDTFEEEEPIDIDAVAASLLELDEK 533


>gi|256854686|ref|ZP_05560050.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis T8]
 gi|256710246|gb|EEU25290.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis T8]
 gi|315030629|gb|EFT42561.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4000]
          Length = 529

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 217/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLATEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|182412907|ref|YP_001817973.1| type I restriction-modification system, M subunit [Opitutus terrae
           PB90-1]
 gi|177840121|gb|ACB74373.1| type I restriction-modification system, M subunit [Opitutus terrae
           PB90-1]
          Length = 547

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 212/565 (37%), Gaps = 83/565 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT        L   +W  A+ L G     DF   +L F  LR L    +   +  +   Y
Sbjct: 1   MTHQDQQR--LGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYDVAAKKELGSDY 58

Query: 60  LAFGGSNI-------------DLESFVKVAGYSFYNTSEYSLSTLGSTN----------- 95
             F   +              D+  F K      +   +         N           
Sbjct: 59  PKFAADDPRVPLAIWYANNPGDVVDFEKQMRRKVHYVIKPDHLWANIANLARSESDELLE 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV 150
           T      YI   SF    + +F + +  S     ++ EK   L  I K  +   L   + 
Sbjct: 119 TLKAGFDYIENESFQSTFQGLFSEINLYSEKLGRSQSEKNKKLCGIIKKIAD-GLKEFST 177

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI +F +   + A +F TP+ +  + + ++              + +++
Sbjct: 178 DTDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQEPKTGKVPHLGSVF 237

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+G  L +    +   G       I    GQE    T+ +    ML+  +     +
Sbjct: 238 DFACGSGSLLLNVRKQMGAHG-------IGRIFGQEKNITTYNLARMNMLLHGV-----K 285

Query: 271 DLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           D    I  G TL+ D    +        +F   ++NPPF  +W       E + + GE  
Sbjct: 286 DTEFEIYHGDTLTNDWDFLRETNPAKMPKFDAVVANPPFSLRW-------EPKDELGEDV 338

Query: 323 RFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   G+   S     FL+H  + L+      G  AI+L    LF G A   E  IR  L
Sbjct: 339 RFKNHGIAPKSAADFAFLLHGFHYLK----DQGVMAIILPHGVLFRGGA---EERIRTKL 391

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA + +    ++GK++
Sbjct: 392 LKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPD---DVLFINAAEHF----DKGKRQ 444

Query: 442 RIINDDQRRQILDIYV-SRENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLAR- 497
            ++ ++   +I+  Y   +E  ++S+ +  D        + + R +  +   ++  L   
Sbjct: 445 NVLTEEHLEKIVATYQLRKEEARYSKRVAMDRIEAEGYNLNISRYISTAEQEEEIDLTAT 504

Query: 498 ----LEADITWRKLSPLHQSFWLDI 518
               +E +   +  +  H +F  ++
Sbjct: 505 HTNLVEIEKRIQTAAQKHNAFLKEL 529


>gi|312870866|ref|ZP_07730971.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093556|gb|EFQ51895.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 3008A-a]
          Length = 502

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 99/528 (18%), Positives = 202/528 (38%), Gaps = 61/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  +A+     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L + +   GE EIR+ ++E+DLIE I+++P+ LF+   ++  LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQK--CGEGEIRQKIIEDDLIEGIISMPSKLFYSVTLSVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K ++ +     I+A  +   +       R  +++  +++   +   +NG       F  
Sbjct: 380 GKKQKGKT--LFIDARHMGHMVDQS---HRDFSEEDIQKLTTTFEKFQNGTLENVKGFCY 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   +    +   +L P R   I D+        +   R  S L + F
Sbjct: 435 VATTKDIAKQDY-ILTPGRYVGIEDQEDDGEPFDEKMTRLTSELSEMF 481


>gi|326314830|ref|YP_004232502.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371666|gb|ADX43935.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 540

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 119/528 (22%), Positives = 202/528 (38%), Gaps = 79/528 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  +L +++W++A  L G    +DF   I     L+R     E     V++     G
Sbjct: 1   MSLTLDTLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEER---VKQLQQVEG 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            S +D    V      F   + +S     + N    L+   A    N     +    ++ 
Sbjct: 58  LSLLDATVEVLDKWGDFPPEARWSHLIARTENIGEALDKAFADIEANN-TELQHVLTATQ 116

Query: 124 IA--RLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               R+     L ++ ++F+   L + D     ++ + YE+LI++F  +  +   +F TP
Sbjct: 117 YGDKRVLSDATLQRLLRHFNQYRLGNADLYKADMLGDAYEYLIKQFADDAGKKGGEFYTP 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPI 239
           + VV L   L+           P    ++YDPTCG+GG L ++ +H+A          P 
Sbjct: 177 KAVVQLVVELI----------DPQPGHSVYDPTCGSGGMLVESAHHIAKLPKGTLLGQPN 226

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
            + +GQE    T A+    + +  + +   R        G TL +         K F   
Sbjct: 227 ALLYGQEKNLGTWAIAKLNLYLHNMRAQIDR--------GDTLVEPRHLEGGYLKTFDRV 278

Query: 296 LSNPPFGKKWEKDKDAVEKEHK---------------------NGELGRFGPGLPKISDG 334
           ++NPPF  K       +E E                       +   GRF  G+P     
Sbjct: 279 IANPPFSAKAWWTPLELEAEAAQDSEGGADNNRKPKTPNYKTVSDPFGRFSYGVPPRGYA 338

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------EN 384
            + F  H+   L+      GR  I+L    LF    G  E +IR  LL            
Sbjct: 339 DLAFAQHMLASLKA----DGRMGIILPHGVLFR---GGEEGKIREGLLFGTDAASGGQPG 391

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DLIEAIV LP  LF+ T I   + +L+ RK    RGKV +I+A+  +     EGK +  +
Sbjct: 392 DLIEAIVGLPPALFYNTGIPACVLVLNKRKPVGLRGKVIIIDASREYL----EGKAQNSL 447

Query: 445 NDDQRRQILDIYVS-----RENGKFSRMLDYRTFGYR--RIKVLRPLR 485
                 +I+  + +      E   + R++           + + R + 
Sbjct: 448 RPKDVERIVRTHKAAFERQTEVENYCRVVSLDEIRSNDGNLNIARYID 495


>gi|308190009|ref|YP_003922940.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|307624751|gb|ADN69056.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
          Length = 540

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 113/537 (21%), Positives = 213/537 (39%), Gaps = 60/537 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----- 58
                A L   IWK A DL G     DF + +L F   R +   L    +  +E+     
Sbjct: 17  KEAQRAELHKTIWKIANDLRGSVDGWDFKQYVLGFLFYRYISENLTNFVNTKQEEAGVKD 76

Query: 59  ---YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
                       ++ + +      F   S+   +   +     NL   + +         
Sbjct: 77  FDYAEISDKQANEIRNTLIQEKGFFILPSKLFKNVAKNCRNDLNLNETLDNIFKGIEASA 136

Query: 108 -----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++ K +F D + ++       +E+   L  I +  + ++L      +     + 
Sbjct: 137 IGTPSENDIKGLFNDVNVNNDKLGNNVIERNKKLSGILEAINEMQLGDFHGHNIDAFGDA 196

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + +   +   +F TP++V  L  +L L    +  +E    + ++YDP CG+G 
Sbjct: 197 YEYLMTMYAANAGKSGGEFFTPQEVSELLASLTLVDFSSDKREMKKEVDSVYDPACGSGS 256

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +       K        GQE+   T+ +    M +  +          +I+ 
Sbjct: 257 LLLKFAKILG------KDKVTKGFFGQEINLTTYNLARINMFLHGINF-----ADFSIKH 305

Query: 279 GSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           G TL+   +    K F   +SNPP+  KW+ D +      +     RF P   L   S  
Sbjct: 306 GDTLNHPQYFENVKNFEAIVSNPPYSIKWDGDTNTTLINDR-----RFAPAGVLAPKSKA 360

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH+ + L    +  G AAIV     L+ G A   E +IR++L++N+ ++AI+ LP
Sbjct: 361 DLAFVMHILHLL----SAKGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAIIQLP 413

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           ++LFF T+IAT + +L   K +     +  INA++ +   +N       + D+    ILD
Sbjct: 414 SNLFFGTSIATCIIVLRKNKKDS---DILFINASNEFIKEKN----NNKLTDENINNILD 466

Query: 455 IYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           IY   +  ++ SR + Y         +     +        +  ++ +   ++L+  
Sbjct: 467 IYRYTKEKEYVSRNVPYEEVKENDYSLSVSTYVKAKDTSEKIDIVQVNAQLKELTKK 523


>gi|293556630|ref|ZP_06675196.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1039]
 gi|291601216|gb|EFF31502.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1039]
          Length = 531

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 109/542 (20%), Positives = 217/542 (40%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYNTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++
Sbjct: 393 SIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKD 445

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +  +      +K+         ++L+
Sbjct: 446 VEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|261839335|gb|ACX99100.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 52]
          Length = 529

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 122/551 (22%), Positives = 214/551 (38%), Gaps = 71/551 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSAVREKYL 60
              L N IWK A +L G     DF + +L     R +   +       E  R    +  L
Sbjct: 16  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERERDPNFDYAL 75

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
                  D +  +      F   S    + L +  T ++L   + +              
Sbjct: 76  LSDEEAEDAKEGLIEEKGFFIPPSALFCNVLKNARTNDDLNVTLQNIFNEIEKSSLGFKS 135

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
            +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L+
Sbjct: 136 EENVKGLFADLDVNSNKLGSSHKNRVEKLNKILEAIGGMQLGDYQKSGIDVFGDAYEYLM 195

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 196 TMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQF 247

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D              GQE+   T+ +C   M +  +          +I  G TL 
Sbjct: 248 SKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIAHGDTLL 296

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                  + F   +SNPP+  KW  D + +    +     RF P   L   +   + F M
Sbjct: 297 DPKHEDDEPFDAIVSNPPYSTKWVGDNNPILINDE-----RFSPAGVLAPKNAADLAFTM 351

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LFF 
Sbjct: 352 HMLSYL----SNSGTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIALPDNLFFG 404

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL  Y  R+
Sbjct: 405 TSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLKEHNREKILKTYTERK 457

Query: 461 NGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             K FS + +            V R +      +   +  L A+I+        QS   +
Sbjct: 458 IIKHFSALANIEKIKENDYNLSVNRYVEQEDTKEVIDIKALNAEISQI---VEKQSALRN 514

Query: 518 ILKPMMQQIYP 528
            L+ +++++  
Sbjct: 515 SLESIIKELEE 525


>gi|219870941|ref|YP_002475316.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
 gi|219691145|gb|ACL32368.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
          Length = 515

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 115/532 (21%), Positives = 201/532 (37%), Gaps = 68/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A ++ G     DF + +L     R +    +       E   
Sbjct: 1   MIISIQQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN 60

Query: 59  YLAFGGSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y  F   +  LE      +K  GY  Y  S+   + + + +T   L   +A         
Sbjct: 61  YAQFSDDDPILEQIKDDTIKSKGYFIY-PSQLFENVVKNAHTNPALNIELAEIFADIENS 119

Query: 108 ------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                   + K +F DFD  S        +K   L  + K    ++    +     +  +
Sbjct: 120 ANGYPSEQDIKGLFADFDTRSNRLGNTVADKNKRLTAVLKGVEELDFGKFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP++V  L   L L     + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKTVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIA 280

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   K F   +SNPP+  +W  D++      +     RF P   L   S  
Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPTLINDE-----RFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+ L+    N      ++ D+   +I+ 
Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++  + +    ++ ++ +          V   +      +   +  L  +I 
Sbjct: 442 LFSEKTDVPHLAQSVENQKIAENEYNLAVSSYVEQKDTREVIDITALNVEIR 493


>gi|297587128|ref|ZP_06945773.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
 gi|297575109|gb|EFH93828.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
          Length = 500

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 102/482 (21%), Positives = 187/482 (38%), Gaps = 59/482 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   TG+       I++ A+ L G+    ++  V+L    L+ +  + E   + + E+  
Sbjct: 1   MDNITGANLGFEKEIFQAADKLRGNIDAAEYKNVVLGLIFLKYISDSFEQKYNQLLEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +A   F+         + S           +     I   +D  + 
Sbjct: 59  ---GDGFEEDRDEYIAENVFFVPKTARWEYVASKAMTAEIGKIIDEAMVAIEQENDRLRG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ ++L        ++   YE+ I +F S   + 
Sbjct: 116 ILPKNYARPELDK----RRLGEVVDLFNNLKLKEHGNSKDILGRTYEYTIAQFASLEGKN 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L   +             +YDP CG GG    +   V +   H
Sbjct: 172 AGEFYTPTSIVKTLVEILEPYEG-----------RVYDPCCGAGGMFVQSAKFVEN---H 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + I  LE D     +       T  KD  +  +  
Sbjct: 218 QGRINEISIYGQEYNTNTWKLAQMNLAIHGLEGDLGHGAA------DTFFKDQHSSLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF  K            K  E  R+  G P   + +  ++ H+   L+   +  
Sbjct: 272 FILANPPFNLKEWGG-------DKLSEDSRWKYGTPPQGNANYAWMQHMIYHLD---DNT 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L    A   E EIR  ++++DL+E I+A+P  LF+ T I+  LWIL+  
Sbjct: 322 GKMGLVLANGSL---SASGKEGEIRENIIKDDLVECIIAMPDRLFYSTGISVSLWILNKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  +++ K   ++  +L   I    +  R ++++   +I   Y +  NGK     D    
Sbjct: 379 K--QQKNKTLFLDCRNLGHMI---DRAHRDLSEEDIAKITTTYKNFVNGK-----DIEEL 428

Query: 474 GY 475
           GY
Sbjct: 429 GY 430


>gi|331018716|gb|EGH98772.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 576

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 179/479 (37%), Gaps = 63/479 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
           T  + +   L   +W  A+ +  +    ++  ++L    L+ +  +    R+ +      
Sbjct: 50  TATSITLQDLEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERRFAD 109

Query: 57  ---EKYLAFGGSNIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTR-------NNLES 102
              + YL             +   Y     F+        ++ +   +       ++  +
Sbjct: 110 ASDDYYLGGDDPTYLAAELEERDYYKEVNVFWVPGVARWESIRANAKQVDIGKRIDDALA 169

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEH 161
            I + +   K I +     + +      G L ++    S I    D      ++  +YE+
Sbjct: 170 DIEAENPQLKNILDKRYARAQLP----DGKLGELVDMISIIGFSSDANKARDLLGQVYEY 225

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F S   +    F TP  +V    A+L                 +YDP CG+GG   
Sbjct: 226 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPH-----------HGKVYDPCCGSGGMFV 274

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +   +   G        +  +GQE  P T  +    + IR +      D +   +   T
Sbjct: 275 QSEKFIEAHGGKLG---DVSIYGQESNPTTWRLAAMNLAIRGI------DFNLGREPADT 325

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +  +  R  + L+NPPF    W       +         R+  G P   + +  +L 
Sbjct: 326 FIYNQHSDLRADFVLANPPFNVSDWWHGSLEGD--------PRWVYGTPPQGNANYAWLQ 377

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+      GRA IVL++  + + +    E +IRR ++E D++E +VALP  LFF 
Sbjct: 378 HMLFHLK----SSGRAGIVLANGSMSSTQNT--EDDIRRAMVEADVVEVMVALPGQLFFN 431

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T I   LW L+ +K   R G+V  I+A  L +++    + +  + D    +I     + 
Sbjct: 432 TQIPACLWFLAKQKVT-RPGEVLFIDARKLGSNV---SRVQIELLDSDIERIAQTVANW 486


>gi|253569687|ref|ZP_04847096.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp.
           1_1_6]
 gi|251840068|gb|EES68150.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp.
           1_1_6]
          Length = 517

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 115/548 (20%), Positives = 214/548 (39%), Gaps = 76/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLAF 62
              L + +W+ A  L G+   +DF    L F   + L   +E   ++  +         +
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIETYANSALDDDEVTFKELW 65

Query: 63  GGSNIDLESF--------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             ++ D            ++  GY       +S          N L     S        
Sbjct: 66  EMTDSDAPELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKRKENVLPMLERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++    + L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHNRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I      +GQE  P T+ +    ML+  +     R  S  I+ 
Sbjct: 238 LLLRAAS----------IGKAAYIYGQEKNPTTYNLARMNMLLHGI-----RFSSFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFDDMQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP----KKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI+ LP ++
Sbjct: 338 ILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +L   + E+    +  I+A+  +  +    K +  +     ++I++ Y 
Sbjct: 391 FYGTSIPTCILVLKKCRKED--DNILFIDASKEFEKV----KTQNKLRPQHIQKIVETYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQ 512
            R E  K+S +   +        + + R +      +   +  + A+IT    K + L +
Sbjct: 445 DRKEIEKYSHLATLQEVAENDYNLNISRYVDTFEEEEPIDIKAVMAEITELEAKRAELDK 504

Query: 513 SFWLDILK 520
              + + +
Sbjct: 505 EIEIYLKE 512


>gi|315169213|gb|EFU13230.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1341]
 gi|315171542|gb|EFU15559.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1342]
          Length = 529

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 217/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLEDEDSRQDLIDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLAPEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|295132749|ref|YP_003583425.1| type I restriction-modification system, M subunit [Zunongwangia
           profunda SM-A87]
 gi|294980764|gb|ADF51229.1| type I restriction-modification system, M subunit [Zunongwangia
           profunda SM-A87]
          Length = 531

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 116/563 (20%), Positives = 209/563 (37%), Gaps = 84/563 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E      +L   +W  A  L G     D+   IL F   + L   L      + E   
Sbjct: 1   MSED--QKKALEKQLWAIANLLRGKMDADDYRNYILGFIFFKYLSEKLHIYADRILEPDG 58

Query: 58  -KYLAFGGSNIDLESFVKV--------AGYSFYNTSEYSLSTLGSTN------------- 95
            KY     ++ + + +++          GY    +  ++       N             
Sbjct: 59  LKYTEIDENSEEGKVYIEAIKKACIKNIGYFLKPSELFTSIANKGANLTGIATNENQEAT 118

Query: 96  ---TRNNLESYIASF---------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNF 140
                 +LE  + +           D+   +FED D +S+        K  L+ KI  + 
Sbjct: 119 QFFILEDLEHILNNIEQSTMGTDSEDDFVRLFEDLDLTSSKLGRTVKAKNELIAKILAHL 178

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           + I+   +     V+ + YE+LI +F     + A +F TP+ V  +   ++      +  
Sbjct: 179 NQIDFQLENAESDVLGDAYEYLIGQFAENAGKKAGEFYTPQQVSTILAKIVTSRKKRI-- 236

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                 +++YDPTCG+G  L      V D G           +GQEL   T+ +    M+
Sbjct: 237 ------KSVYDPTCGSGSLLLRVAKEVEDVG---------YFYGQELNRTTYNLARMNMI 281

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +          +I+Q  TL +      +    ++NPPF  KW   K     + +  +
Sbjct: 282 LHDVHFSK-----FDIKQEDTLEEPQHLDVQAEAIVANPPFSAKWSA-KGVFSSDDRFSQ 335

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            G+  P     S     F+ H+ + L    +  G  A VL    LF G A   E  IR++
Sbjct: 336 YGKLAP----KSKADFAFVQHMIHHL----DESGIMATVLPHGVLFRGAA---EGHIRKY 384

Query: 381 LLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+ + I+A++ LP ++FF T I T + ++  +K  E    V  I+A+  +        
Sbjct: 385 LIEDRNYIDAVIGLPANIFFGTGIPTCILVI--KKCREIDDDVLFIDASKGFEK----QG 438

Query: 440 KRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           K  ++  +   +I+D Y  R+   KFS              +  P  +    ++  +   
Sbjct: 439 KDNVLLPEHIEKIVDTYTERKELDKFSYCASLAEIKENDYNLNIPRYVDTFEEEEPVDIE 498

Query: 499 EADITWRKLSPLHQSFWLDILKP 521
                 + L    Q     I + 
Sbjct: 499 AVAKELKALETEIQQTDSTIAEF 521


>gi|315152687|gb|EFT96703.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0031]
          Length = 531

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 109/542 (20%), Positives = 216/542 (39%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R+ 
Sbjct: 393 SIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKG 445

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +  +      +K+         ++L+
Sbjct: 446 VEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|313112144|ref|ZP_07797925.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa
           39016]
 gi|310884427|gb|EFQ43021.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa
           39016]
          Length = 507

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 114/546 (20%), Positives = 209/546 (38%), Gaps = 58/546 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   +   +   +W   +   G      +   IL    L+ +    +    + R +Y 
Sbjct: 1   MSDK-VNQDDINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDSYRMEYG 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKA 113
                  ++   E FV     SFY   +              L S   +      D  K+
Sbjct: 60  DEPELIEEMLKNERFVLPRNASFYALYDRRYEPGNGERIDQALHSIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F++     EK    +L  + ++F+   ++L P  V    V+ N YE+LI+ F +
Sbjct: 120 VFQDISFNTDKLGEEKQKNTILRHLLEDFAREELDLKPSRVGSLDVIGNAYEYLIKNFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   LL           P    ++ DP CG+   L      V 
Sbjct: 180 SGGQKAGEFYTPPEVSELIAELL----------DPQPGDSICDPACGSASLLMKCGRKVR 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +    H        +GQE    T ++    M +   +       +  I+ G TL      
Sbjct: 230 E----HHNSKQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTLRNPKLL 278

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +F    +NPPF             E ++ + GRF  G+P  + G   F++H+ 
Sbjct: 279 DTNGQLLKFDIVTANPPFSLDKWGH-----DEAEHDQFGRFKRGIPPKTKGDFAFILHMI 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GR A+++    LF G +   E +IR+ L+E +L++A++ LP  LF+ T I
Sbjct: 334 ETLKAKT---GRMAVIVPHGVLFRGSS---EGKIRQKLIEENLLDAVIGLPEKLFYGTGI 387

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + + S  KT+E    V  I+A+  + S +N    + ++ ++Q   IL  Y  R N  
Sbjct: 388 PAAILVFSKAKTDE---NVLFIDASRDFKSGKN----QNVLGEEQINNILLTYRHRINSD 440

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+S     +        +  P  +    ++  +  +       +L        + +   +
Sbjct: 441 KYSHRASLQEIRDNDYNLNIPRYVDTFEEEKEVNLMAVRKERAQLKAKLAELEIAMDTYL 500

Query: 523 MQQIYP 528
            +  Y 
Sbjct: 501 RELGYD 506


>gi|302381005|ref|ZP_07269466.1| type I restriction-modification system, M subunit [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311226|gb|EFK93246.1| type I restriction-modification system, M subunit [Finegoldia magna
           ACS-171-V-Col3]
          Length = 522

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 120/553 (21%), Positives = 210/553 (37%), Gaps = 71/553 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
           +       L   IW  A++L G     DF   IL     R +   +    +    +    
Sbjct: 6   KKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENITNYINTGEIEAGNV 65

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
                 ++   +    E  V+  G+    +  +      + +  N  E+   +F      
Sbjct: 66  DFDFAQMSDEMAEQAREGLVQEKGFFILPSELFCNVRAKAKDDENLNETLERAFRHIEES 125

Query: 108 ------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV---MSN 157
                   +   +F+DFD +S       A    K+CK   G+ +++   V D       +
Sbjct: 126 AKGSESESDFAGLFDDFDVNSNKLGSTVAKRNEKLCKLLDGVADMNLGDVKDHDIDAFGD 185

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG+G
Sbjct: 186 AYEYLMTMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGSG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A   +      +        +GQE+   T+ +C   M +  +  D       NI 
Sbjct: 238 SLLLKAEKILGRDKIRNG------FYGQEINITTYNLCRINMFLHDIGFDK-----FNIA 286

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
              TL        + F   +SNPP+  KW  + + +          RF P   L   S  
Sbjct: 287 CEDTLIAPAHWDDEPFELIVSNPPYSIKWAGNDNPLLIND-----PRFSPAGVLAPKSKA 341

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ ++ LP
Sbjct: 342 DLAFIMHSLSWL----ASNGTAAIVCFPGIMYRGGA---EKKIRKYLIDNNFVDCVIQLP 394

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + ++   KT+    K   I+AT     + N       +  D   +I++
Sbjct: 395 PNLFFGTSIATCIMVMKKNKTD---NKTLFIDATKECIKVTN----NNKLTADNMDKIVE 447

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            + +R E   FS +  Y           V   +      +K  + +L A+I  +++    
Sbjct: 448 CFANRSEIEHFSHLATYDEVEENDYNLSVSTYVEAEDTREKIDIVKLNAEI--KEIVARE 505

Query: 512 QSFWLDILKPMMQ 524
           Q    +I K + +
Sbjct: 506 QVLRDEIDKIISE 518


>gi|212691979|ref|ZP_03300107.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855]
 gi|212665371|gb|EEB25943.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855]
          Length = 517

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 211/548 (38%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG-- 64
              L + +W+ A  L G+   +DF    L F   + L   +E    +A+ +  + F    
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDEITFKELW 65

Query: 65  --SNIDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
              + D     + A        GY       +S          N L     S        
Sbjct: 66  EMDDTDAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAIKRKENILPILERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGHQRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I   +  +GQE  P T+ +    ML+  +     R  +  I+ 
Sbjct: 238 LLLRAAH----------IGNAVEIYGQEKNPTTYNLARMNMLLHDI-----RFSNFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP----RKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    + GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP ++
Sbjct: 338 ILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +L   + E+    +  I+A+  +  +    K +  +  +  ++I+D Y 
Sbjct: 391 FYGTSIPTCVLVLKKCRKED--DNILFIDASKEFEKV----KTQNKLRPEHIKKIVDTYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 DRKEIEKYSHLATLQEIADNDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRADLDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEGYLKE 512


>gi|302331823|gb|ADL22016.1| type I site-specific deoxyribonuclease methyltransferase subunit,
           HsdM [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 504

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 195/519 (37%), Gaps = 56/519 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
               +W+ A+ L G     ++  V L    L+ +  + E     +     A      +  
Sbjct: 6   FEEKLWQAADKLRGSMDAAEYKNVALGIIFLKYVSDSFEEKYEELLNDEYADEEDKDEYL 65

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            E+   V   S +     +          +     I   +++ K +         + +  
Sbjct: 66  AENIFWVPKESRWQYINDNSKKPEIGQIIDKAMIAIERENESLKGVLPKDYARPALDK-- 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L  
Sbjct: 124 --EKLGDIIDLFTFKVGDSESKKQDVLGRVYEYFIAKFASAEGKNAGEFYTPASIVKLLV 181

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++   +             +YDP CG+GG    +   V     H      +  +GQE  
Sbjct: 182 EMVEPYEG-----------RIYDPCCGSGGMFVQSERFVER---HQGRLDNIAVYGQESN 227

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +    + IR +++D             T   DL    +  + L+NPPF       
Sbjct: 228 PTTWKLAKMNLAIRGIDND------LGDHHADTFHNDLHKDLKADFILANPPFNASDWGR 281

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++  +   
Sbjct: 282 EKLLDD-------YRWKFGIPPKGNANYAWIEHMISKL----APSGTAGFVLANGSMST- 329

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQL 424
            +G  E EIR+ L+E DL+E IV LP  LF+ T I   LW ++  K +    ERRG+V  
Sbjct: 330 -SGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFVTKNKAKNGKNERRGEVLF 388

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------ENGKFSRMLDYRTFGY 475
           I+A ++ + +    +  + ++DD+ + I ++Y S          +   F ++        
Sbjct: 389 IDARNIGSMV---SRTLKEVSDDEIKDIANVYHSWRGTNNNQYEDKAGFCKVAKTEEIKN 445

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               +L P R   + +    +        R  + L + F
Sbjct: 446 NEY-ILTPGRYVGLAEVEEDSEPFEQKMERITADLSEQF 483


>gi|210623094|ref|ZP_03293581.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275]
 gi|210153897|gb|EEA84903.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275]
          Length = 522

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 118/533 (22%), Positives = 203/533 (38%), Gaps = 71/533 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
           +       L   IW  A++L G     DF   +L     R +   +    +    +    
Sbjct: 6   KKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITNYINEGEREAGDT 65

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------- 105
                 L+   +    E  ++  G+ F   SE   +        +NL   +         
Sbjct: 66  DFDYACLSDEYAEEAREGLIEEKGF-FILPSELFCNVRAKAKDDDNLNETLERVFRHIEE 124

Query: 106 -----SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV---MS 156
                    +   +F+DFD ++       A    K+CK   GI +++   V +       
Sbjct: 125 SAKGSESESDFAGLFDDFDVNNNKLGSTVAKRNEKLCKLLDGIADMNLGYVKNHDIDAFG 184

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG+
Sbjct: 185 DAYEYLMTMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPACGS 236

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A   +      +        +GQE+   T+ +C   M +  +  D       NI
Sbjct: 237 GSLLLKAEKLLGKDKIRNG------FYGQEINITTYNLCRINMFLHDIGFDK-----FNI 285

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
               TL+       + F   +SNPP+  KW  + + +          RF P   L   S 
Sbjct: 286 ACEDTLTAPAHWDDEPFELIVSNPPYSIKWAGNDNPLLIND-----PRFAPAGVLAPKSK 340

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+ L
Sbjct: 341 ADLAFIMHSLSWL----APNGTAAIVCFPGIMYRGGA---EQKIRKYLIDNNFVDCIIQL 393

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P++LFF T+IAT + +L   K++ R      I+AT+ +    N       +  +   +I+
Sbjct: 394 PSNLFFGTSIATCIMVLKKNKSDNR---TLFIDATNEFVKATN----NNHMTQENMDKIV 446

Query: 454 DIYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           D + +R E   FS +  Y           V   +      +K  + +L A+I 
Sbjct: 447 DCFANRNEVKHFSHLATYDEVAENDYNLSVSTYVEAEDTREKIDIVKLNAEIK 499


>gi|197249396|ref|YP_002149446.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213099|gb|ACH50496.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 496

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 125/510 (24%), Positives = 208/510 (40%), Gaps = 56/510 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L   +W  AE L G    +D+ + I P    +RL        +   E +       
Sbjct: 2   SNKKLEELLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYNEAMELH------E 55

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFS 121
            D E       + F   SE +   + +T+        N    I   +     +F D  ++
Sbjct: 56  GDAEYAAMPMFHRFNIPSEAAWEKVRNTSKNIGEAIQNALRLIEVNNPRLHGVFGDAQWT 115

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 116 NK-ERLPD-HLLADLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 173

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T ++                T YDPTCGTGG L +A+  +   G   +    + 
Sbjct: 174 TVVHLMTRIM----------GLKPGETAYDPTCGTGGMLLNAVMDLRARGEEWR---SVH 220

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297
            +GQE+   T A+    M +  +E         ++ +G TL++  F      K+F    +
Sbjct: 221 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDRLKQFDVIFA 273

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPP+  KKW +DK A +        GR   G+P        F  H+   L+      GRA
Sbjct: 274 NPPYSIKKWNRDKFAAD------PYGRNLYGVPPQGCADYAFYTHIIKSLK---PDTGRA 324

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K  
Sbjct: 325 AMLWPHGVLFRDS----EQTIRKQVVESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPA 380

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
           ER+ KV  IN  +  T  R   +    ++ D    + + Y S EN    + ++D      
Sbjct: 381 ERKNKVLFINGVEHVTRERAHSR----LSKDDLAVLCEAYFSPENQNNITALVDIDAIKG 436

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR 505
               +  PL +    +        A   W+
Sbjct: 437 NLYNLSIPLYVQAQQNGKVHNIEHAIEAWK 466


>gi|229547563|ref|ZP_04436288.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|229307336|gb|EEN73323.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
          Length = 529

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 108/545 (19%), Positives = 216/545 (39%), Gaps = 69/545 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----------------R 52
            L   ++  A++L      +++   +L     + L   L  T                 +
Sbjct: 4   ELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTKQ 63

Query: 53  SAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
           + + ++ L    S  DL         +     Y F + +E +   +   +       Y++
Sbjct: 64  TELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYLS 123

Query: 106 SFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           S       +F+D D  S        ++   + ++ K  + I++        V+ + YE L
Sbjct: 124 SNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEFL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + +
Sbjct: 182 ISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLMLN 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             N++         P  +  HGQEL   T  +    +++  +E++       N++ G TL
Sbjct: 236 VRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDTL 283

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL+
Sbjct: 284 NKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFLL 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF 
Sbjct: 339 HGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFG 391

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R+
Sbjct: 392 TSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLATEHIDKIVSTYIERQ 444

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++L
Sbjct: 445 DVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAELL 504

Query: 520 KPMMQ 524
             +  
Sbjct: 505 AMLDD 509


>gi|219669968|ref|YP_002460403.1| type I restriction-modification system, M subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|219540228|gb|ACL21967.1| type I restriction-modification system, M subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 525

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 112/536 (20%), Positives = 205/536 (38%), Gaps = 69/536 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVREKYLA-- 61
           + L N +W +A+ L G    +++   +L     + L         E  +  V E      
Sbjct: 2   SELNNQLWASADILRGKMDASEYKNYLLGLVFYKYLSDQELRAVYEEEQGKVAEYPSRDE 61

Query: 62  -----FGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGSTNTR------NNLESYIAS 106
                    N D     ++     GY     S +      +           N    +  
Sbjct: 62  QFSGLLDWYNDDAAGIREIISKKLGYFIEPDSLFYTFRKKAGEYELHISDIQNAFIELGR 121

Query: 107 FSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             ++   +F+D D +ST       ++   + ++ K    I+L        V+ + YE+LI
Sbjct: 122 QGEHFAGLFDDVDLASTKLGANAQQRNVTITEVIKALDEIDLFGH--DGDVIGDAYEYLI 179

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP+ V  + + ++    +            +YDPT G+G  + + 
Sbjct: 180 GQFAAGAGKKAGEFYTPQAVSKIISEIVAIGQEETAPFH------IYDPTMGSGSLMLNI 233

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V + G  H        HGQEL   T+ +    +++  +E    R     ++ G TL 
Sbjct: 234 RRFVKNPGQVH-------YHGQELNTTTYNLARMNLILHNVEQSQMR-----LRNGDTLD 281

Query: 284 KDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           +D  T +   F+  + NPP+   W  D   +  + +  + G+  P     S     FL+H
Sbjct: 282 EDWPTDEPYLFNAVVMNPPYSANWSADGKFL-SDPRFEQYGKLAP----KSKADFSFLLH 336

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L    N  G   IVL    LF    G+ E  IR+ LL+   IEA++ LP ++F+ T
Sbjct: 337 GFYHL----NEKGTMGIVLPHGVLFR---GASEGVIRKTLLDMGAIEAVIGLPANIFYGT 389

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I T + IL   +    +  V  I+A+  +   +N    +  I     R+I+D Y  R  
Sbjct: 390 SIPTVVLILKKNRA---KRDVLFIDASKAFEKQKN----QNCIRSQDIRKIVDTYKKRSS 442

Query: 461 NGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           + +++ + DY         + + R +          +  L  +IT   L    +  
Sbjct: 443 SPQYAHLADYDEIVRNDYNLNIPRYVDTFEEEAPIDIVALSKEITDLNLQIKQREA 498


>gi|298253166|ref|ZP_06976958.1| type I restriction system adenine methylase (hsdM) [Gardnerella
           vaginalis 5-1]
 gi|297532561|gb|EFH71447.1| type I restriction system adenine methylase (hsdM) [Gardnerella
           vaginalis 5-1]
          Length = 561

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 116/535 (21%), Positives = 200/535 (37%), Gaps = 70/535 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSA 54
           T      A L   IWK A+DL G     DF   +L     R +   L       E     
Sbjct: 30  TRKEEERAELHRTIWKIADDLRGSVDGWDFKAYVLCTMFYRYISENLCDYINKDEHESEG 89

Query: 55  VREKYLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
               +     S+ D E            F   SE   + L +    +NL   ++      
Sbjct: 90  GDPDFDYAKISDEDAEPLRSEMISEKGFFILPSELFCNVLKNAPQDSNLNETLSRVFRNI 149

Query: 108 ---------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV--- 154
                    S + K +F D+D ++        G   +  K    I E+   +V + V   
Sbjct: 150 EASSQGTDSSGDFKGLFSDYDVNNIKLADTVEGRNKRFVKLLQVISEMKLGSVNNNVIEA 209

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   ++ TP +V  L T L      ++         ++YDP C
Sbjct: 210 FGDAYEYLMGLYASNAGKSGGEYFTPAEVSMLLTRLGTTGKSSIS--------SVYDPAC 261

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +     +         +GQE    ++ +C   M +  +  +       
Sbjct: 262 GSGSLLLKTKKVLGIENINGG------FYGQEKNVTSYNLCRMNMFLHDVNFNKFEITC- 314

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
               G TL        K+F   +SNPP+   WE D + +          RF P   L   
Sbjct: 315 ----GDTLINPQIDANKKFELVVSNPPYSTSWEGDSNPLMIND-----PRFAPAGVLAPK 365

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   M F++H    L       G AAIV     ++ G A   E +IR++L+E++ ++ ++
Sbjct: 366 SKADMAFVLHCLAHL----AEDGAAAIVCFPGIMYRGGA---EQKIRQYLIEHNAVDCVI 418

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP++LFF T+IAT + +L   K  +    +  ++A+  +    N  K    ++D+   Q
Sbjct: 419 QLPSNLFFGTSIATCIMVLRKNKQNDTS--ILFVDASQQFVKSTNSNK----LSDENIEQ 472

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           I+  Y SR++    + +         +    V   + +    +K  +  L A I 
Sbjct: 473 IVKWYTSRQDVEHIAHVASLEEVESNKYNLSVSTYVEVEDTREKINITELNAQIA 527


>gi|167854665|ref|ZP_02477445.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus parasuis 29755]
 gi|167854202|gb|EDS25436.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus parasuis 29755]
          Length = 515

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 116/532 (21%), Positives = 201/532 (37%), Gaps = 68/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A ++ G     DF + +L     R +    +       E   
Sbjct: 1   MIISIQQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN 60

Query: 59  YLAFGGSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
           Y  F   +  LE      +K  GY  Y  S+   + +   +T   L   +A         
Sbjct: 61  YAQFSDDDPILEQIKDDTIKSKGYFIY-PSQLFENVVKDAHTNPTLNIELAEIFADIENS 119

Query: 108 ------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSN 157
                   + K +F DFD  S        +K   L  + K    ++    +     +  +
Sbjct: 120 ANGYPSEQDIKGLFADFDTRSNRLGNTVADKNKRLTAVLKGVEELDFGKFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP++V  L   L L     + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKTVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIA 280

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   K F   +SNPP+  +W  D++      +     RF P   L   S  
Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPTLINDE-----RFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+ L+    N      ++ D+   +I+ 
Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++  + +    ++ ++ +          V   +      +   +  L A+I 
Sbjct: 442 LFSEKTDVPHLAQSVENQKIAENEYNLAVSSYVEQKDTREVIDITALNAEIR 493


>gi|49257053|dbj|BAD24842.1| HsdM protein [Staphylococcus aureus]
          Length = 504

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 110/524 (20%), Positives = 194/524 (37%), Gaps = 66/524 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               +W+ A+ L G     ++  V L    L+ +  + E      + + L       + +
Sbjct: 6   FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEE-----KYEELKLDPYADEED 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
               +A   F+   E     +     R      I    D A    E+ + S      ++ 
Sbjct: 61  QDEYLAENIFWVPKEARWQYINDNAKRPE----IGQIIDKAMIAIENENESLKGVLPKEY 116

Query: 131 GLLYKICKNFSGI-ELHPDTVPD------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                  +    I +L    V D       V+  +YE+ I +F S   + A +F TP  +
Sbjct: 117 ARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI 176

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 +YDP CG+GG    +   V     H      +  +
Sbjct: 177 VKLLVEMIEPYKG-----------RIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIY 222

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF  
Sbjct: 223 GQESNPTTWKLAKMNLAIRGIDND------LGERNADTFHNDLHKGLKADYILANPPFNA 276

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++ 
Sbjct: 277 SDWGQERLLDD-------YRWQFGIPPTGNANYAWIEHMISKL----APNGIAGFVLANG 325

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERR 419
            +    +   E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ERR
Sbjct: 326 SMST--SNKDELEIRKNLIEQDLVECIVTLPGQLFYSTPIPVCLWFISNNKGQNGKKERR 383

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------NGKFSRMLDY 470
            ++  I+A ++   I    +  +  +D+  +++   Y + +            F ++ + 
Sbjct: 384 NEILFIDAREIGHMI---SRTLKEFSDEDIQEVAQTYHAWKGTNDKSYEDIAGFCKVANL 440

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                    +L P R   + D             R  S L + F
Sbjct: 441 EEVKNNEY-ILTPGRYVDLADIEEDEEPFEQKMERITSELSEQF 483


>gi|299142935|ref|ZP_07036061.1| type I restriction-modification system, M subunit [Prevotella oris
           C735]
 gi|298575551|gb|EFI47431.1| type I restriction-modification system, M subunit [Prevotella oris
           C735]
          Length = 518

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 116/549 (21%), Positives = 208/549 (37%), Gaps = 73/549 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVREKYLA 61
              L + +W+ A  L G+   +DF    L F   + L   +E           V  K L 
Sbjct: 6   QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANDALVDDDVTFKELW 65

Query: 62  FGGSNIDLESF--------VKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD- 109
               + D+E          ++  GY    +  +S    S     N    LE  +    D 
Sbjct: 66  AMEKDTDIEELQESVKTECIENIGYFIEPSFLFSSVIESIKKKENILPILERSLKRIEDS 125

Query: 110 --------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                   +   +F D D +S        +K  L+  +      I+   +   +  ++ +
Sbjct: 126 TLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGD 185

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G
Sbjct: 186 AYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHARL--------RNVYDPTCGSG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A            I       GQE  P T+ +    ML+  ++       +  I+
Sbjct: 238 SLLLRAA----------GIGHANEIFGQEKNPTTYNLARMNMLLHGIKFS-----NFRIE 282

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G TL  D F   +F   ++NPPF  +W    D    +++  + GR  P           
Sbjct: 283 NGDTLEADAFDDTQFDAVVANPPFSAEWNA-ADKFNNDYRFSKAGRLAP----RKTADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTD 396
           F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP +
Sbjct: 338 FILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +F+ T+I T + +    + E+    +  I+A+  +  I    K +  +     ++I+D Y
Sbjct: 391 IFYGTSIPTCILVFRKCRKED--DSILFIDASKDFEKI----KTQNKLRPQHIQKIVDTY 444

Query: 457 VSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R E  K+S +            +  P  +    ++  +         ++L        
Sbjct: 445 RDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIHAVMKDIKELEAKRADLD 504

Query: 516 LDILKPMMQ 524
            +I   + +
Sbjct: 505 KEIEGYLKE 513


>gi|150006176|ref|YP_001300920.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|149934600|gb|ABR41298.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus
           ATCC 8482]
          Length = 517

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 210/548 (38%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG-- 64
              L + +W+ A  L G+   +DF    L F   + L   +E    +A+ +  + F    
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDEITFKELW 65

Query: 65  --SNIDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
              + D     + A        GY       +S          N L     S        
Sbjct: 66  KMDDADAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAIKRKENILPMLERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGHQRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A N          I   +  +GQE  P T+ +    ML+  +     R  +  I+ 
Sbjct: 238 LLLRAAN----------IGNAVDIYGQEKNPTTYNLARMNMLLHGI-----RFSNFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP----RKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP ++
Sbjct: 338 ILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +    + E+    +  I+A+  +  +    K +  + +   ++I++ Y 
Sbjct: 391 FYGTSIPTCILVFKKCRKED--DNILFIDASKEFEKV----KTQNKLREQHIQKIVETYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 DRKEIEKYSHLASLQEIAENDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRAELNK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEVYLKE 512


>gi|317177320|dbj|BAJ55109.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 529

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 126/566 (22%), Positives = 212/566 (37%), Gaps = 78/566 (13%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNKLHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYI 60

Query: 53  SAVREK------YLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
           +    +      Y +      +  +  + V    F   S    + L +  T  +L   + 
Sbjct: 61  NKQERELNPGFDYASLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPTNEDLNVTLQ 120

Query: 106 SF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT 149
           +               +N K +F D D +S     +   +   L KI K    ++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVAKLNKILKAIGDMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK 286

Query: 269 RRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL    L   + F   +SNPP+  KW  D + +    +     RF P 
Sbjct: 287 -----FHIAHGDTLLDPKLKDDEPFDAIVSNPPYSTKWMGDNNPLLINDE-----RFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L       + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKKTADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
              R +IL  Y  R+  K FS + +            V R +      +   +  L A+I
Sbjct: 443 AHNREKILKTYTERKTIKHFSALANIEQIKENDYNLSVNRYVEQEDTKEAIDIKALNAEI 502

Query: 503 TW--RKLSPLHQSFWLDILKPMMQQI 526
           +   +K S L  S    I +    Q 
Sbjct: 503 SQIVQKQSALRNSLESIIKELEEGQN 528


>gi|15676726|ref|NP_273871.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|7226064|gb|AAF41241.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|316984502|gb|EFV63470.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
 gi|325140020|gb|EGC62549.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis CU385]
          Length = 514

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 117/533 (21%), Positives = 203/533 (38%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNQ-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLIEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREIIDIKQLNAEI 491


>gi|325200488|gb|ADY95943.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
          Length = 513

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 117/533 (21%), Positives = 203/533 (38%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 119 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNQ-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 388 NLFYGTGIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLIEEHIAEIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREIIDIKQLNAEI 490


>gi|256853743|ref|ZP_05559108.1| type I restriction-modification system M subunit [Enterococcus
           faecalis T8]
 gi|256710686|gb|EEU25729.1| type I restriction-modification system M subunit [Enterococcus
           faecalis T8]
 gi|315030240|gb|EFT42172.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4000]
 gi|315144777|gb|EFT88793.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2141]
          Length = 530

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 110/542 (20%), Positives = 218/542 (40%), Gaps = 65/542 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + + 
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNV 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL+
Sbjct: 237 RNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLN 284

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H
Sbjct: 285 KDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T
Sbjct: 340 GFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++
Sbjct: 393 SIPTTVIVLKKNR---QNRDVLFIDASREFVKGKN----QNKLSEENIQKILENYAERKD 445

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +  +      +K+    Q    ++L+
Sbjct: 446 VEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLE 505

Query: 521 PM 522
            +
Sbjct: 506 AI 507


>gi|301162152|emb|CBW21697.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           638R]
          Length = 517

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 114/548 (20%), Positives = 213/548 (38%), Gaps = 76/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLAF 62
              L + +W+ A  L G+   +DF    L F   + L   +E   ++  +         +
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIETYANSALDDDEVTFKELW 65

Query: 63  GGSNIDLESF--------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             ++ D            ++  GY       +S          N L     S        
Sbjct: 66  EMTDSDAPELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKRKENVLPMLERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++    + L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHNRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I      +GQE  P T+ +    ML+  +     R  S  I+ 
Sbjct: 238 LLLRAAS----------IGKAAYIYGQEKNPTTYNLARMNMLLHGI-----RFSSFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFDDMQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP----KKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI+ LP ++
Sbjct: 338 ILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +L   + E+    +  I+A+  +  +    K +  +     ++I++ Y 
Sbjct: 391 FYGTSIPTCILVLKKCRKED--DNILFIDASKEFEKV----KTQNKLRPQHIQKIVETYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQ 512
            R E  K+S +   +        + + R +      +   +  + A+I     K + L +
Sbjct: 445 DRKEIEKYSHLATLQEVAENDYNLNIPRYVDTFEEEEPIDIKAVMAEIAELEAKRAELDK 504

Query: 513 SFWLDILK 520
              + + +
Sbjct: 505 EIEIYLKE 512


>gi|297545264|ref|YP_003677566.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843039|gb|ADH61555.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 514

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 114/563 (20%), Positives = 211/563 (37%), Gaps = 81/563 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           M +      + A+ +W  A+ L  + + +++  ++L    L+ +  A +  +  +     
Sbjct: 1   MGQNNDGVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRKEELEYLIK 60

Query: 57  ----EKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
               E+Y         L   +    +A   FY   E     + +    N   S I    D
Sbjct: 61  DPKSEEYYCETNEEAQLILEDKDEYMAANVFYVPPEARYEYIMA----NARRSDIGKLID 116

Query: 110 NAKAIFEDFDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           NA  + E  +       L K           L +I      I          V+  +YE+
Sbjct: 117 NAMDLIEKENPKQLRGVLPKVYTRAPLDPHTLGEIVTLIGSINFG-KNEELDVLGRVYEY 175

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +  F  +  +   +F TP  VV L   ++             +   ++DP CG+GG   
Sbjct: 176 FLSEFARKEGKRGGEFFTPSTVVKLLVEMIQP-----------LHGRVFDPCCGSGGMFV 224

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            ++  V    +H      +  +GQE  P T+ +C   + IR +E+D         + G++
Sbjct: 225 QSIRFVE---AHAGKKGDISIYGQESNPTTYRLCKMNLAIRGIEADI--------RLGNS 273

Query: 282 LSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            + D F   R  Y L+NPPF    W  D+ A +         R+  GLP  S+ +  ++ 
Sbjct: 274 FTDDQFKDLRADYILANPPFNDSAWGADRLANDV--------RWKYGLPPDSNANYAWIQ 325

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L       G A  VL++  +    + + E EIR+ ++E++L++ +VALP  LF+ 
Sbjct: 326 HFIYHL----APKGVAGFVLANGSMTT--SNNAEYEIRKRIIEDNLVDCMVALPPQLFYT 379

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I   LW +   +  +   +   I+A  +   +    +  R + D++ ++I   Y +  
Sbjct: 380 TGIPACLWFIRKGRETK---ETLFIDARKIGVMV---DRTHRELTDEEIQKIAQTYHNWR 433

Query: 461 NGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-RKLSPLHQ 512
           N         F   +           VL P R   + D       E DI +  K++ L +
Sbjct: 434 NKNGYEDVKGFCASVPMEVIAQNDY-VLAPGRYVGVEDTR-----EDDIPFEEKMAELTE 487

Query: 513 SFWLDILKPMMQQIYPYGWAESF 535
             +  + +            E  
Sbjct: 488 KLYQQMKEAKRLDEVIKANLEEL 510


>gi|55820777|ref|YP_139219.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMG 18311]
 gi|55736762|gb|AAV60404.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMG 18311]
          Length = 534

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 122/572 (21%), Positives = 218/572 (38%), Gaps = 65/572 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M+E T ++ SL   +W +A+ L       D+   +L     + L           +E   
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 53  SAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            ++ E    +     D E+             Y+ +    ++       +    LE    
Sbjct: 61  ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++       FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +        ++ +
Sbjct: 233 GSLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG  L   S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGK-LAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+
Sbjct: 390 ANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SRE+  KF+ +  +         +  P  +    ++      E      + +   +S
Sbjct: 443 AYKSREDIDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIES 502

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
               +L  + Q       A+  +K  +K+ + 
Sbjct: 503 QTASLLDMLGQLHGTTPEADEELKAFVKAFKG 534


>gi|146295062|ref|YP_001185486.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566752|gb|ABP77687.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 505

 Score =  319 bits (817), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 119/509 (23%), Positives = 205/509 (40%), Gaps = 48/509 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + I P    +RL        +   E +       
Sbjct: 5   NKKKLEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIH------E 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFS 121
            D E       + F    E     +  T+        N    I + +     +F D  ++
Sbjct: 59  GDAEYAAMPMFHRFDIPKEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWT 118

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 119 NK-ERLPD-HLLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 176

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPP 238
            VVHL T ++                T YDPTCGTGG L +A+  +   G   +  +   
Sbjct: 177 TVVHLMTRIM----------GLKPGETAYDPTCGTGGMLLNAVMDLRTHGEPSADQQQWR 226

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE+   T A+    M +  +E     D+ +          +    K+F    +N
Sbjct: 227 TVHLYGQEVNLLTSAIARMNMFLHDIE---EFDVLRGDTLADPKFIENDQLKQFDVIFAN 283

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PP+  KKW +DK A +        GR   G+P        F  H+   L+      GRAA
Sbjct: 284 PPYSIKKWNRDKFAAD------PYGRNLYGVPPQGCADYAFYTHIIKSLK---PDTGRAA 334

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K  E
Sbjct: 335 MLWPHGVLFRDS----EQSIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPAE 390

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR 476
           R+ KV  IN  +  T  R   +    ++D+    + + Y + E     + ++D  T    
Sbjct: 391 RKNKVLFINGVEHVTRERAHSR----LSDEDLAVLCEAYFAPEKQSDITALVDIDTLKEN 446

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWR 505
              +  PL +    +        A  +W+
Sbjct: 447 LYNLSIPLYVQAQNNGEVHDIEHAIESWK 475


>gi|317009142|gb|ADU79722.1| type I restriction-modification system, M subunit [Helicobacter
           pylori India7]
          Length = 530

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 123/552 (22%), Positives = 217/552 (39%), Gaps = 73/552 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVREKYLAFGGSN 66
              L N IWK A +L G     DF + +L     R +   +    +   RE+  +F  +N
Sbjct: 17  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERERDPSFDYAN 76

Query: 67  IDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           +  E        F++  G+ F   S    + L +     +L   + +             
Sbjct: 77  LSDEEAESTRKGFIEEKGF-FIPPSALFCNALKNAPDNEDLNVTLQNIFTEIEKSSLGTP 135

Query: 108 -SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
             +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L
Sbjct: 136 SEENVKGLFADLDVNSNKLGSSHKTRVEKLTKILQAIGGMQLGDYLKSGIDVFGDAYEYL 195

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L  
Sbjct: 196 MAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQ 247

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + D              GQE+   T+ +C   M +  +          +I  G TL
Sbjct: 248 FSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIAHGDTL 296

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
                   + F   +SNPP+  KW  D   +    +     RF P   L   +   + F 
Sbjct: 297 LDPKHEDDEPFDAIVSNPPYSTKWVGDSSPILITDE-----RFSPAGVLAPKNAADLAFT 351

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LFF
Sbjct: 352 MHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPDNLFF 404

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL  Y+ R
Sbjct: 405 GTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLKEHNREKILKTYIER 457

Query: 460 ENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +  K F  + D            V R +      +   +  L ++I         QS   
Sbjct: 458 KEVKHFCALADIEQIKENDYNLSVNRYVEQEDTKEVIDIKALNSEIPQI---VEKQSALR 514

Query: 517 DILKPMMQQIYP 528
           + L  +++++  
Sbjct: 515 NSLDSIIKELEE 526


>gi|254672640|emb|CBA06429.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha275]
          Length = 514

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDYHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEIS 492


>gi|121583502|ref|YP_973928.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596752|gb|ABM40186.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 517

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/470 (20%), Positives = 181/470 (38%), Gaps = 61/470 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-------REKYLAF 62
            +   +W  A+ L  +    ++  ++L    ++ +       R+ +        + Y   
Sbjct: 4   DIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPADAYYYG 63

Query: 63  GGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
             +  D+E+ ++   Y     +F+        +L +   +       ++  S I + +  
Sbjct: 64  DAAPEDIEAELEDRDYYKEVNAFWVPEAARWESLRAAAKQVDIGKRIDDALSLIEAENPT 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
            K I +     + +      G L ++    S I    + +    V+  +YE+ +  F S 
Sbjct: 124 LKGILDKRYARAQLP----DGKLGELVDLISTIGFGDNPSTARDVLGQVYEYFLGMFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPASIVKTLVAILGPHSG-----------KVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   + G T +++    
Sbjct: 229 HGGKLG---DVSIYGQEANPTTWRLAAMNLAIRGI------DFNLGKEPGDTFTRNQHPD 279

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R  + L+NPPF          +          R+  G P   + +  +L H+ + L+  
Sbjct: 280 LRADFILANPPFNISDWWHGSLMGD-------ARWVHGDPPPGNANYAWLQHMLHHLKP- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRA IVL++  + + +    E +IR  ++E D++E +VALP  LFF T I   LW 
Sbjct: 332 ---TGRAGIVLANGSMSSSQNS--EGQIRAAMVEADVVEVMVALPGQLFFNTQIPACLWF 386

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           L  +KT  R+G+V  I+A  L T I    + +    D    +I     + 
Sbjct: 387 LVKQKT-HRKGEVLFIDARKLATMI---SRVQSEFTDAVIERIAATVAAW 432


>gi|319410193|emb|CBY90529.1| putative type I restriction-modification system M protein
           [Neisseria meningitidis WUE 2594]
          Length = 514

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEIS 492


>gi|319939011|ref|ZP_08013375.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
 gi|319812061|gb|EFW08327.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
          Length = 531

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 204/518 (39%), Gaps = 68/518 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------------R 52
               + N IW  A +L G+   +++   IL F   R L    E                 
Sbjct: 3   QTQEITNKIWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEQYLINNDILDLEDGKTI 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----NLESYIASF 107
           + + ++          LE      GY+     E +  +L +    N     + ++    F
Sbjct: 63  NQLYKEQATGEELADYLEDIASSLGYAI--APEDTWLSLLTRIENNEVIPSDYQTIFDHF 120

Query: 108 SDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           + NA          + +F D +   T    +  ++A  L +I K    I    D   D +
Sbjct: 121 NANAELNKEAVQDFRGVFNDINLGYTRLGSSTNDRAKSLNRIVKLVDDINYKSDDGRD-I 179

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE LI++F +   +   +F TP +V  +   ++ D       E      ++YDPT 
Sbjct: 180 LGFIYEELIKKFAASAGKKGGEFYTPHEVSQILAKIVTDKV-----EQTERTFSVYDPTM 234

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L    N +     + + P  +   GQEL   T+ +    +++  +        + 
Sbjct: 235 GSGSLLLTVGNEL----PNGQKPGAIKYFGQELNTTTYNLARMNLMMHGVTYSNMNLSNA 290

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +  +          G    + F   ++NPP+  KW+   + + K+ +  E G+  P    
Sbjct: 291 DTLESDWPDGPDEKGVDHPRSFDAVVANPPYSAKWDNADNKL-KDPRFSEYGKLAPA--- 346

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H    L    N  G  AIVL    LF G A   E +IR+ L+E + ++ +
Sbjct: 347 -SKADFAFILHSVYHL----NDTGTMAIVLPHGVLFRGAA---ELKIRQTLVEKNYLDTV 398

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+I T + +    K       +  I+A+  +   +N    +  +ND    
Sbjct: 399 IGLPANLFYGTSIPTTVLVFRKNKENR---DILFIDASKDFDKGKN----QNTLNDTHIE 451

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMS 487
           +I++ + +R++  K++R++ +         +  P  + 
Sbjct: 452 KIIETFRNRQDVNKYARLVSFEEIKENDFNLNIPRYVD 489


>gi|146294000|ref|YP_001184424.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145565690|gb|ABP76625.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 523

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 182/471 (38%), Gaps = 63/471 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKYLA 61
            +   +W  A+ L  +    ++  ++L    L+ +       R+ +         + +L 
Sbjct: 4   DIKKTLWAAADKLRANVDAAEYKHLVLGLIFLKFVSDTFAARRAELERRFVDVNDDYFLH 63

Query: 62  FGGSNIDLESFVKVAGY----SFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN 110
              ++   E   +   Y     F+         L +   + N+          I   + +
Sbjct: 64  DADADFIAEELEERDYYIEVNVFWVPEPARWEGLRANAKQANIGKQIDDALDAIEKENPS 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
            K I +     + +      G L ++    S I    D      ++  +YE+ + +F S 
Sbjct: 124 LKGILDKRYARAPLP----DGKLGELVDLISTIGFGEDQSKARDILGQVYEYFLGQFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP+ +V+   A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKKGGQFYTPQSIVNTLVAVLDPHQG-----------KVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   + G T +K+  + 
Sbjct: 229 HGGKLG---DVSIYGQESNPTTWRLAAMNLAIRGI------DFNLGREPGDTFTKNQHSD 279

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            R  Y L+NPPF    W       +         R+  G P   + +  +L H+   L+ 
Sbjct: 280 LRADYILANPPFNISDWWHGSLEGD--------PRWVYGNPPQGNANYAWLQHMLYHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + + +    E +IRR +++ D++E +VALP  LFF T I   LW
Sbjct: 332 ----TGRAGIVLANGSMSSSQNT--EGDIRRAMVDADVVEVMVALPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            L+ +KT  R+G+V  I+A  L   I    + +  ++     +I +   + 
Sbjct: 386 FLTKQKTA-RKGEVLFIDARKLGKMI---SRVQSELDQAAIDRIANTAKAW 432


>gi|91773202|ref|YP_565894.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91712217|gb|ABE52144.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 519

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/537 (19%), Positives = 201/537 (37%), Gaps = 57/537 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  ++   +WK A+ L  +    ++  ++L    L+ +  + E     +++    +
Sbjct: 5   NNKTQDETIEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELYQKLQKGDGDY 64

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
            G++ +     K A   F+  +    S L S   +       +     I   +   K + 
Sbjct: 65  TGADPEDRDEYK-AENVFFVPAIARWSYLQSKAKQPEIGKDVDRAMDAIERENPLLKGVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGA 174
                   +        L  +    S I L         ++ +++E+ +  F     +  
Sbjct: 124 PKVFARGNL----DPTSLGGLIDLVSNIALGDAKARSADILGHVFEYFLGEFALAEGKRG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR VV L   +L   +             ++DP CG+GG    +   VAD   H 
Sbjct: 180 GQFYTPRSVVELLVEMLEPYNG-----------RVFDPCCGSGGMFVQSEKFVAD---HR 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T  +    + IR ++S   +  ++      +   D     +  Y
Sbjct: 226 GKVNDISIYGQESNQTTWRLAKMNLAIRGIDSSQVKWNNEG-----SFLNDSHKDLKADY 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF        D + K+      GR+  G+P   + +  ++ H    L    +  G
Sbjct: 281 VIANPPFNDSDW-SGDLLRKD------GRWKYGVPPAGNANYAWIQHFLYHL----SPNG 329

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +A  VL+   L +    SGE +IR+ L+E+ +++ IV LP  LF  T I   LW LS  K
Sbjct: 330 QAGFVLAKGSLTSKS--SGEGDIRKELVESRMVDCIVNLPPKLFLNTQIPASLWFLSRNK 387

Query: 415 T----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                  R  ++  I+A ++   I    ++ R  + +  +++ D Y +  N       D 
Sbjct: 388 ANGKYRNRTDEILFIDARNMGHLI---NRRTREFSPEDIQKVADTYHNWRNPDG-NYEDV 443

Query: 471 RTFGYRRIKVLRPLRMSFILDK---TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + F      + R   + +++      GL   E D  + +     ++ +   LK   Q
Sbjct: 444 KGF-CNSTSIERVHELDYVVTPGRYVGLPVEEDDFDFNERFTGLKAEFEGQLKEEEQ 499


>gi|59800848|ref|YP_207560.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae FA 1090]
 gi|254493318|ref|ZP_05106489.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae 1291]
 gi|268594456|ref|ZP_06128623.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae 35/02]
 gi|268598584|ref|ZP_06132751.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae MS11]
 gi|268686196|ref|ZP_06153058.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|293399447|ref|ZP_06643600.1| type I restriction-modification system, M subunit [Neisseria
           gonorrhoeae F62]
 gi|59717743|gb|AAW89148.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae FA 1090]
 gi|226512358|gb|EEH61703.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae 1291]
 gi|268547845|gb|EEZ43263.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae 35/02]
 gi|268582715|gb|EEZ47391.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae MS11]
 gi|268626480|gb|EEZ58880.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291610016|gb|EFF39138.1| type I restriction-modification system, M subunit [Neisseria
           gonorrhoeae F62]
          Length = 514

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 203/534 (38%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTCIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 492


>gi|239998596|ref|ZP_04718520.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae 35/02]
 gi|240112514|ref|ZP_04727004.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae MS11]
 gi|240127799|ref|ZP_04740460.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 513

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 203/534 (38%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 119 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ +
Sbjct: 388 NLFYGTCIAVNILVLSKHKDNT---DIQFIDASGFFKKETN----NNVLTEEHIAEIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 491


>gi|91787817|ref|YP_548769.1| N-6 DNA methylase [Polaromonas sp. JS666]
 gi|91697042|gb|ABE43871.1| N-6 DNA methylase [Polaromonas sp. JS666]
          Length = 535

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 177/470 (37%), Gaps = 61/470 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-------REKYLAF 62
            +   +W  A+ L  +    ++  ++L    ++ +       RS V       +++Y   
Sbjct: 4   DIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRSEVATRLADPKDEYFFE 63

Query: 63  GGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTRNNLESYIAS-------FSDN 110
           G +   L   ++   Y      F+        +L +   + ++   I          +  
Sbjct: 64  GATPKTLAVELEDRDYYKSVNVFWVPEAARWESLRAAAKQPDIGKRIDEALTLVEVENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
            K I +     + +      G L ++    S +    + +V   ++  +YE+ +  F S 
Sbjct: 124 LKGILDKRYARAQLP----DGKLGELVDLISTVGFGDNPSVARDILGQVYEYFLGMFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPASIVKTLVAVLNPHSG-----------KVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G           +GQE  P T  +    + IR +      D +   +   T  ++    
Sbjct: 229 HGGKLGDA---SIYGQEANPTTWRLAAMNLAIRGI------DFNLGREPADTFVRNQHPD 279

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R  + L+NPPF                     R+  G P   + +  +L H+ + L+  
Sbjct: 280 LRADFILANPPFNISDWWHASLTGD-------ARWQYGDPPTGNANYAWLQHMLHHLKP- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRA IVL++  + + +    E +IR  ++E D++E ++ALP  LFF T I   LW 
Sbjct: 332 ---TGRAGIVLANGSMSSSQNS--EGQIRAAMVEADVVEVMIALPGQLFFNTQIPACLWF 386

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           L  +KT  R+G+V  I+A  L T I    + +    D+   +I +   + 
Sbjct: 387 LVKKKTR-RQGEVLFIDARKLATMI---SRVQSEFTDEVIARIANTVAAW 432


>gi|257465468|ref|ZP_05629839.1| type I restriction-modification system, M subunit [Actinobacillus
           minor 202]
 gi|257451128|gb|EEV25171.1| type I restriction-modification system, M subunit [Actinobacillus
           minor 202]
          Length = 503

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 197/536 (36%), Gaps = 61/536 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63
           +   +   +W   +   G      +   IL    L+ +    +      + +Y       
Sbjct: 4   NQDDINKALWSACDTFRGTISPDTYKDFILTMLFLKYISDVWQDHYQQYQAEYGDVPELI 63

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIFEDFD 119
              +  E FV     +FY   E              L +   +      D  K++F+D  
Sbjct: 64  EEMMKQERFVLPPHANFYRLYEQRFEAGNGERIDQALHAIEEANGTKLKDAGKSVFQDIS 123

Query: 120 FSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           F++     EK    +L ++ ++F+   ++L P  V    ++ N YE+LI+ F +   + A
Sbjct: 124 FNTDKLGEEKQKNTILRELLEDFAKPELDLKPSKVGTLDIIGNAYEYLIKNFAASGGQKA 183

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L   LL           P M  ++ DP CG+G  L      V       
Sbjct: 184 GEFYTPPEVSDLIAELL----------DPQMGDSICDPACGSGSLLMKCGQKVVKNHQ-- 231

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
                   +GQE    T ++    M +         + +  I+ G T+            
Sbjct: 232 --SKNYALYGQEAIGSTWSLAKMNMFLH-------SEDNHRIEWGDTIRNPKLLDSNGEL 282

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F    +NPPF             E       RF  GLP  + G   F+ H+   L+  
Sbjct: 283 ITFDIVTANPPFSLDKWG-----YDEVSQDRFQRFEHGLPPKTKGDYAFISHMIKTLK-- 335

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR  +V+    LF G A   E +IR+ L++ +L++A++ LP  LF+ T I   + I
Sbjct: 336 -EKTGRMGVVVPHGVLFRGAA---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPAAILI 391

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
               KT++    V  I+A++ +   +N    +  +  +   +I+  Y +R+   K++ + 
Sbjct: 392 FRKNKTDDT---VLFIDASNEFKPGKN----QNTLTVENIEKIVRTYRTRQAVEKYAFVA 444

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                      +  P  +    ++  +     R E     ++L+ L       + +
Sbjct: 445 TLADIQQNDYNLNIPRYVDTFEEEQLIDLHQVRAERMQLKQQLAELETKMEGYLRE 500


>gi|55822680|ref|YP_141121.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus CNRZ1066]
 gi|55738665|gb|AAV62306.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus CNRZ1066]
          Length = 534

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 218/572 (38%), Gaps = 65/572 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M+E T ++ SL   +W +A+ L       D+   +L     + L           +E   
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 53  SAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            ++ E    +     D E+             Y+ +    ++       +    LE    
Sbjct: 61  ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++       FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +        ++ +
Sbjct: 233 GSLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG  L   S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGK-LAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T++ T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+
Sbjct: 390 ANIFFNTSVPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SRE+  KF+ +  +         +  P  +    ++      E      + +   +S
Sbjct: 443 AYKSREDIDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIES 502

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
               +L  + Q       A+  +K  +K+ + 
Sbjct: 503 QTASLLDMLGQLHGTTPEADEELKAFVKAFKG 534


>gi|161507538|ref|YP_001577492.1| Type I restriction-modification system modification subunit
           [Lactobacillus helveticus DPC 4571]
 gi|160348527|gb|ABX27201.1| Type I restriction-modification system modification subunit
           [Lactobacillus helveticus DPC 4571]
          Length = 551

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/562 (20%), Positives = 221/562 (39%), Gaps = 74/562 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTRSA 54
           E   +   L + ++  A+ L       ++   +L     + L           LE  R  
Sbjct: 4   EKVLTKKELESALFSAADALRSKMDANEYKNYLLGIIFYKYLSDKMLYHVGEVLEGRRDL 63

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTL------------------GST 94
             E+         D E        +F  T   E++ + +                    +
Sbjct: 64  SLEENQKIYEEKFDTEDLQDDIKTTFSYTISPEHTFTYILNEINGTARTKDGKIKTFQIS 123

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVP 151
           +  +      ++   + + +F D    S        ++A  +  + K    +EL      
Sbjct: 124 DLADAFNDIESTKDSDFEGLFADVQLYSPRLGTNAQKQADTIANVIKAIGDLELVNQVDN 183

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI++F SE  + A +F TP++V  L T L L        ++     T+YD
Sbjct: 184 KDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELLTKLTL------VDKNYPEEMTVYD 237

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L     ++            +  +GQE+   T+ +    M++  ++S     
Sbjct: 238 PAMGSGSLLLKFKKYIKLANGQA---DKIFYYGQEINMSTYNLARMNMILHGVDSS---- 290

Query: 272 LSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--G 327
            ++ +++G TL +D     +  F   + NPP+  KW  +K  ++         RF P   
Sbjct: 291 -NQELRRGDTLDEDWPPVSKTMFDAVVMNPPYSLKWSANKGFLQD-------PRFSPYGV 342

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I
Sbjct: 343 LPPKSKADYAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRKKLLENGSI 395

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP++LF+ T+I T + +L   KT+     V  I+A+  +   +N    +  + ++
Sbjct: 396 DAVIGLPSNLFYSTSIPTVIVVLKKDKTDR---SVMFIDASKGFEKKKN----QNELREE 448

Query: 448 QRRQILDIYVSREN-GKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
             ++ILD Y  RE+  +++ +   D        + + R +          L ++  D+  
Sbjct: 449 DIQKILDTYEKREDVERYAHLAKFDEIEENDFNLNIPRYVDTFVPEPPVDLKKVATDLHE 508

Query: 505 RKLS-PLHQSFWLDILKPMMQQ 525
             +    +Q   + +LK +   
Sbjct: 509 TNVEIEKNQRELVGMLKELTSD 530


>gi|257880781|ref|ZP_05660434.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,230,933]
 gi|257891263|ref|ZP_05670916.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,231,410]
 gi|257815009|gb|EEV43767.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,230,933]
 gi|257827623|gb|EEV54249.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,231,410]
          Length = 540

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 119/566 (21%), Positives = 216/566 (38%), Gaps = 63/566 (11%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MTE    ++ SL   +W +A+ L       ++   +L     + L   +    S + E+ 
Sbjct: 1   MTEQIEKNSKSLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60

Query: 60  ------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--------- 98
                        AF  ++I  +   ++     Y  +     T       +         
Sbjct: 61  TDDLNKAQDLYVEAFKDADIKDDLLYELKDEFSYTIAPALTFTAQVAAIHDGSFQLEDLV 120

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSN 157
                I   S+N + +FED D  S             I      +E L+       V+ +
Sbjct: 121 QGFRDIEQSSENFENLFEDIDLYSKKLGSTPQKQNKTIADVMKELEGLNMAGHAGDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP+ V  L T ++L   +           ++YD T G+G
Sbjct: 181 AYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKED------KKGFSVYDATMGSG 234

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +A  +    G+       +   GQEL   T+ +    M++  +        ++++ 
Sbjct: 235 SLLLNAKKYSHQPGT-------ISYFGQELNTSTYNLARMNMILHGV-----PIANQHLH 282

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              TL +D  T +   F   L NPP+  KW  DK  ++    +     +G  L   S   
Sbjct: 283 NADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD----DPRFSAYGV-LAPKSKAD 337

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+ ++ LP 
Sbjct: 338 FAFLLHGYYHLK----DTGVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDTVIGLPA 390

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T+I T + IL   +    +  V  I+A+  +  I    K +  + D     IL+ 
Sbjct: 391 NIFFNTSIPTTVIILKKDRA---KKDVLFIDASQDFEKI----KTQNTLRDYHIDAILEA 443

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y +R    K++ + ++         +  P  +    ++  +       + ++        
Sbjct: 444 YKTRTIKDKYAYVAEFDEIVENDYNLNIPRYVDTFEEEEVIPLDSVSKSIQETKAELAQA 503

Query: 515 WLDILKPMMQQIYPYGWAESFVKESI 540
             ++   + +       AE+ ++  I
Sbjct: 504 ETELFNMLKELNGTTEEAENELQAFI 529


>gi|315148961|gb|EFT92977.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4244]
          Length = 529

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 216/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLATEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K + +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKHAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|310659274|ref|YP_003936995.1| type I restriction modification system protein hsdmi [Clostridium
           sticklandii DSM 519]
 gi|308826052|emb|CBH22090.1| Type I restriction modification system protein HsdMI [Clostridium
           sticklandii]
          Length = 515

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 110/529 (20%), Positives = 198/529 (37%), Gaps = 62/529 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L + IWK A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SAAQRAELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSKYIEAGDESIN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------- 109
              L       +++         F   S+   +   + NT  +L + +A+          
Sbjct: 60  YAELPDDIITSEIKDDAIKTKGYFIYPSQLFENIAKTANTNESLNTDLAAIFSAIESSAN 119

Query: 110 ------NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
                 + K +F DFD +S        +K   L  + K  +G++    +     +  + Y
Sbjct: 120 GYPSELDIKGLFADFDTTSNRLGNTVKDKNSRLAAVIKGVAGLKFGEFEDNHIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V +L   L +    ++ K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQSVSNLIAKLAIHGQSSINK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +             +GQE+   T+ +    M +  +  D       N    
Sbjct: 232 LLQAKKQFDEHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDKFHIALGNTLLD 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
                D    K F   +SNPP+   W    D            RF P   L   S     
Sbjct: 286 PHYGDD----KPFDAIVSNPPYSVNWIGSDDPTLINDD-----RFAPAGVLAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E + +L  +L
Sbjct: 337 FVLHSLSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVTSLAPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  KT+    K Q I+A+        +     ++ +    +I+ I+ 
Sbjct: 390 FFGTSIAVNILVLSKHKTD---NKTQFIDAS--GADFYKKETNNNVLTEKHIEEIMTIFD 444

Query: 458 SREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++E+    ++ +DY         + +   +      +   +  L  +I 
Sbjct: 445 TKEDIPHVAKCIDYEAIVSNDYNLSISSYVEAKDTREVIDINELNKEIK 493


>gi|325281058|ref|YP_004253600.1| type I restriction-modification system, M subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324312867|gb|ADY33420.1| type I restriction-modification system, M subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 518

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/554 (22%), Positives = 217/554 (39%), Gaps = 64/554 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT        L + IWK A ++ G     DF + +L     R +            +   
Sbjct: 1   MT-SIQQREQLQSQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTDYIEGGDDSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------ 109
           Y +   S I  E     VK  GY  Y  S+   + + + NT  NL + + +  D      
Sbjct: 60  YASLPDSVITPEIKDDAVKTKGYFIY-PSQLFGNVVKTANTNPNLNTDLKAIFDSIESSA 118

Query: 110 -------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  N K +F DFD +ST        K   L  + K   G+   + +     +  + 
Sbjct: 119 NGYASEKNIKGLFADFDTTSTRLGNTVENKNSRLAAVLKGVEGLNFGNFEEHEIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP++V  L + L +     + K        +YDP  G+G 
Sbjct: 179 YEFLINNYAANAGKSGGEFFTPQNVSKLISQLAMHKQATVNK--------IYDPAAGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     D              GQE+   T+ +    M +  +  D       NI  
Sbjct: 231 LLLQAKKQFEDRIIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIAL 279

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL+   F   + F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GNTLTDPQFGDDKPFDAIVSNPPYSVNWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++++ IE I++LP+
Sbjct: 335 FAFVLHSLSYL----SSRGRAAIVCFPGIFYRGGA---EQKIRKYLVDSNFIETIISLPS 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K +    K+Q I+A+    S   +     ++ +    +I+D 
Sbjct: 388 NLFYGTSIAVNILVLSKHKPDT---KIQFIDAS--GESFFTKETNNNVLENKHIDRIIDF 442

Query: 456 YVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +  +E+  + ++ +DY++       +     +     +      E +   R++       
Sbjct: 443 FDKKEDVDYIAKSVDYKSITENDYNLSVSSYIEVKDTRPKTDIKELNERIRRIVERENEL 502

Query: 515 WLDILKPMMQQIYP 528
            ++I K + +    
Sbjct: 503 RIEIDKIVAELEED 516


>gi|312902060|ref|ZP_07761321.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0470]
 gi|311290842|gb|EFQ69398.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0470]
          Length = 529

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 218/546 (39%), Gaps = 69/546 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPYQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTYNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLATEHIDKIVSTYIER 443

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +  +   +  +   +    ++
Sbjct: 444 QDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAEL 503

Query: 519 LKPMMQ 524
           L  +  
Sbjct: 504 LAMLDD 509


>gi|308389007|gb|ADO31327.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha710]
 gi|325135951|gb|EGC58561.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M0579]
 gi|325207870|gb|ADZ03322.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 514

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/533 (22%), Positives = 201/533 (37%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y  S+   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PSQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++    I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGSFFKKETN----NNVLTEEHIADIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEI 491


>gi|325129941|gb|EGC52740.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis OX99.30304]
          Length = 513

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/533 (22%), Positives = 201/533 (37%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y  S+   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PSQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 119 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++    I+ +
Sbjct: 388 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGSFFKKETN----NNVLTEEHIADIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEI 490


>gi|29349946|ref|NP_813449.1| typeI restriction enzyme EcoR124II M protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341857|gb|AAO79643.1| Type I restriction enzyme EcoR124II M protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 517

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 111/548 (20%), Positives = 205/548 (37%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLAF 62
              L + +W+ A  L G+   +DF    L F   + L   +E   +             +
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALADDDITFKELW 65

Query: 63  GGSNIDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
              + D     + A        GY       +S          N L     S        
Sbjct: 66  ETDDADAIELQEEAKNQCLENIGYFIEPQFLFSSVIEAIKRKENILPMLERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 D+   +F D D +S        +K  L+  +      I    +   +  ++ + 
Sbjct: 126 LGQDSEDDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDINFGLEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGHQRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I   +  +GQE  P T+ +    ML+  +     R  +  I+ 
Sbjct: 238 LLLRAAS----------IGNAVDIYGQEKNPTTYNLARMNMLLHGI-----RFSNFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP----RKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP ++
Sbjct: 338 ILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +    + E+    +  I+A+  +  +    K +  + +   ++I++ Y 
Sbjct: 391 FYGTSIPTCILVFKKCRKED--DNILFIDASKEFEKV----KTQNKLREQHIQKIVETYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 DRKEIEKYSHLASLQEIAENDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRAELDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEVYLKE 512


>gi|189499313|ref|YP_001958783.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189494754|gb|ACE03302.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 547

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 128/576 (22%), Positives = 218/576 (37%), Gaps = 81/576 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----- 55
           M    G+  SL ++IW  A  + G      + + ILP    +RL    +   + +     
Sbjct: 1   MANNNGNGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 56  -REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA 111
            R+K      ++  L  F             +S+    S             IA  +   
Sbjct: 61  SRKKAFQLVRADHKLVRFYLPLVPFDPEEPVWSVIRKFSDRIGEGVTTHMRAIARENPLL 120

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + I +  DF++T    R      L  + +  S   L  D V   ++   YE+LIR+F   
Sbjct: 121 QGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKCLGLDDVEADIIGKSYEYLIRKFAEG 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  + + +L          +P     +YDP CG+GG L      + +
Sbjct: 181 GGQSAGEFYTPPEVGTIMSRVL----------APEPGMDIYDPCCGSGGLLVKCEIAMEE 230

Query: 230 CGSHHKI---------------------------PPILVPHGQELEPETHAVCVAGMLIR 262
                K                               L  +GQE   +T A+    M+I 
Sbjct: 231 KRREIKEGGHSCPPLHSELNGYPSCNGGLENPPSIAPLKLYGQEYIADTWAMANMNMIIH 290

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +E             G T     F  K+     F   ++NP + + W       E ++ 
Sbjct: 291 DMEGQIEI--------GDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEADYD 337

Query: 318 NGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-- 373
           N EL RF  G G P  S     ++ H+   L    N  GRAAIVL +  +  G   +G  
Sbjct: 338 NDELDRFPAGAGFPGKSSADWGWIQHIHASL----NNSGRAAIVLDTGAVSRGSGNAGTN 393

Query: 374 -ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  +R+W ++ND+IE+++ LP +LF+ T     +  L+  K  ER G V L+NA+ ++ 
Sbjct: 394 KEKSVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNRDKEIEREGCVLLVNASRIFE 453

Query: 433 SIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                G  +  I D+  ++I+D     +E  K SR+++          +  P R     +
Sbjct: 454 K----GDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVNLAELKKNDYNIS-PSRYIHTGE 508

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 +E  +       L      + L+ +++Q+ 
Sbjct: 509 AETYRPIEDIVKDLNAIELEARETDEALRKILKQLG 544


>gi|291515463|emb|CBK64673.1| type I restriction system adenine methylase (hsdM) [Alistipes
           shahii WAL 8301]
          Length = 517

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/548 (20%), Positives = 212/548 (38%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG-- 64
              L + +W+ A  L G+   +DF    L F   + L   +E    +A+ +  + F    
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDEITFKKLW 65

Query: 65  --SNIDLESFVKVA--------GYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD-- 109
              + D     + A        GY       +S    +     N    LE  +    D  
Sbjct: 66  EMKDADAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAVKRKENILPMLERSLKRIEDST 125

Query: 110 -------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                  +   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGHQRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A N          I   +  +GQE  P T+ +    ML+  +     R  +  I+ 
Sbjct: 238 LLLRAAN----------IGNAVDIYGQEKNPTTYNLARMNMLLHGI-----RFSNFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP----RKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP ++
Sbjct: 338 ILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +    + E+    +  I+A+  +  +    K +  + +   ++I++ Y 
Sbjct: 391 FYGTSIPTCILVFKKCRKED--DNILFIDASKEFEKV----KTQNKLREQHIQKIVETYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 DRKEIEKYSHLATLKEVEENDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRAELDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEVYLKE 512


>gi|315651209|ref|ZP_07904239.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315486505|gb|EFU76857.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 510

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/533 (20%), Positives = 194/533 (36%), Gaps = 63/533 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + E+  
Sbjct: 1   MAGKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+   E   S + S+       + I    DNA    E  + 
Sbjct: 59  ---GDGFEDDRDAYAEENIFFVPEEARWSKIASSAH----TAEIGIVIDNAMREIEKENV 111

Query: 121 S-------STIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           S       +         +L ++   F + +++        ++   YE+ I +F +    
Sbjct: 112 SLKNVLPKNYAGPDLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    A+L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSD 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++      +       T   D+    + 
Sbjct: 222 NRG---SISVYGQESNADTWKMAKMNMAIRGIDA------NFGPYHADTFFNDIHKTLKS 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  +  R+  G+P   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGA-------DKLKDDVRWKYGMPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++ 
Sbjct: 322 NGKIGLVLANGAL--SSQTSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENG----- 462
            K  +++G+   I+A  +   +  + +       +         +   +   +NG     
Sbjct: 380 NK--KQKGRTLFIDARKMGYMVDRKHRDFTEGIQEDGSLGDIDLLAKTFEDFQNGVLKER 437

Query: 463 -KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             FS +   +        +L P R   I ++        +   R  S L   F
Sbjct: 438 KGFSAIATIKDIAKHDY-ILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSDMF 489


>gi|271498973|ref|YP_003331998.1| type I restriction-modification system, M subunit [Dickeya dadantii
           Ech586]
 gi|270342528|gb|ACZ75293.1| type I restriction-modification system, M subunit [Dickeya dadantii
           Ech586]
          Length = 507

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/540 (20%), Positives = 210/540 (38%), Gaps = 48/540 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+        + N +W   +   G      +   IL    L+ +    +      + +Y 
Sbjct: 1   MSNKIDQN-RINNVLWSVCDIFRGTISPDTYKDFILTMLFLKYISDVWQDHYDGYKAEYG 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKA 113
                  ++   E FV     SFY   ++             L +   +      D  K+
Sbjct: 60  DEPELIEEMMKNERFVLPKQASFYTLFQHRNEPGNGERIDKALHAIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F++     EK   G+L  + + FS   ++L P  +    V+ N YE+LI +F +
Sbjct: 120 VFQDISFNTDKLGEEKQKNGILKDLLEEFSCADLDLKPSRIGGLDVIGNAYEYLIGKFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A ++ TP +V  L   LL           P    T+ DP CG+   L      V 
Sbjct: 180 NSGQKAGEYYTPPEVSDLMAELL----------DPQPGDTICDPACGSASLLMKCGRKVV 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +       +GQE    T ++    M +   E + + +    I+    L K+   
Sbjct: 230 QNHGSKQYE----LYGQEAIGSTWSLAKMNMFLHG-EDNHKIEWGDTIRNPKLLDKNG-D 283

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K F    +NPPF             E ++ +  RF  GLP  + G   F++H+   L+ 
Sbjct: 284 LKLFDIVTANPPFSLDKWG-----YSEVESDKFSRFRRGLPPKTKGDYAFILHMIETLKP 338

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR  +V+    LF G +   E +IR+ L+E +L++A++ LP  LFF T I   + 
Sbjct: 339 K---AGRMGVVVPHGVLFRGSS---EGKIRQKLIEENLLDAVIGLPEKLFFGTGIPASIL 392

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           I   +K ++    V  I+A+  +   +N+ +    ++ +   +++ IY  R+N  K++ +
Sbjct: 393 IFKKQKVDD---NVLFIDASREFDPGKNQNR----LSTENIVKVVKIYRDRDNVDKYAYL 445

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
              +        +  P  +    ++  +  +      ++L         ++ K + +  Y
Sbjct: 446 ASLQEIRDNDYNLNIPRYVDTFEEEQEIDLMVVRAERKQLQAQLAELEAEMAKYLEELGY 505


>gi|283769412|ref|ZP_06342310.1| putative type I restriction-modification system, M subunit
           [Bulleidia extructa W1219]
 gi|283103937|gb|EFC05322.1| putative type I restriction-modification system, M subunit
           [Bulleidia extructa W1219]
          Length = 510

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/533 (19%), Positives = 195/533 (36%), Gaps = 63/533 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MAGKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    V    F+   E   S + S           ++    I   + + K 
Sbjct: 59  ---GDGFENDRDAYVEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENVSLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F +    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDETEASKDLLGRTYEYCIAQFAAYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    A+L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSD 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++      +       T   D+    + 
Sbjct: 222 NRGN---ISVYGQESNADTWKMAKMNMAIRGIDA------NFGSYHADTFFNDIHKTLKS 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGA-------DKLKDDVRWKYGTPPSGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +  +G  E EIR+ ++E+DL+E IVALPT LF+   I   LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQSSG--EGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENGK---- 463
            K  +++GK   I+A  +   +  + +       +         +   +   +NG+    
Sbjct: 380 NK--KQKGKTLFIDARKMGYMVDRKHRDFTEGIQEDGSLGDIDLLAKTFEDFQNGELEEK 437

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             FS +        +   +L P R   I ++            R  S L   F
Sbjct: 438 KGFSAIASIEDIAKQDY-ILTPGRYVGIEEQEDDGEPFEKKMTRLTSELSDMF 489


>gi|329114039|ref|ZP_08242803.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
 gi|326696578|gb|EGE48255.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
          Length = 537

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 106/466 (22%), Positives = 177/466 (37%), Gaps = 58/466 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               ++  A+ L  + + +D+  V L    LR +  A E   + +    L    +  D +
Sbjct: 34  FEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM---LDDPAAAEDPD 90

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            ++  A   F+       S L      N   S I    D A    E  +       L K 
Sbjct: 91  EYL--AENIFWVPENARWSHLRD----NARSSSIGKLIDEAMLAIEKANPDQLKGVLPKD 144

Query: 131 G--------LLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                    +L ++    S I +   D     V+  +YE+ +  F     +   +F TP 
Sbjct: 145 YGRPALDSVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPS 204

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV    ++L           P     +YDP CG+GG    +   V   G        + 
Sbjct: 205 SVVRTLVSML----------EPYKG-RVYDPCCGSGGMFVQSERFVETHGGKLG---DIA 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE    T  +    + +R + +D R +         +  +D     RF Y L+NPPF
Sbjct: 251 IYGQESNHTTWRLARMNLAVRGIGADIRWNNEG------SFLRDELKDLRFDYILANPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                             E  R+  G P   + +  +L H+   L       G A +VL+
Sbjct: 305 NVSDW-------WNASLEEDPRWQYGKPPAGNANYAWLQHILWHL----APDGTAGVVLA 353

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EE 417
           +  + + +    E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K      +
Sbjct: 354 NGSMSSNQNS--EGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKKQKGWRD 411

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           RRG++  I+A  L   +    + RR + D+   +I D Y +    K
Sbjct: 412 RRGEILFIDARKLGKLV---DRTRRELTDEDVARIADTYHAWRGEK 454


>gi|265763432|ref|ZP_06092000.1| type I restriction-modification system, M subunit [Bacteroides sp.
           2_1_16]
 gi|263256040|gb|EEZ27386.1| type I restriction-modification system, M subunit [Bacteroides sp.
           2_1_16]
          Length = 517

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/548 (20%), Positives = 205/548 (37%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLAF 62
              L + +W+ A  L G+   +DF    L F   + L   +E   +             +
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALADDDITFKELW 65

Query: 63  GGSNIDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
              + D     + A        GY       +S          N L     S        
Sbjct: 66  ETDDADAIELQEEAKNQCLENIGYFIEPQFLFSSVIEAIKRKENILPMLERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 D+   +F D D +S        +K  L+  +      I    +   +  ++ + 
Sbjct: 126 LGQDSEDDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDINFGLEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGHQRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I   +  +GQE  P T+ +    ML+  ++       +  I+ 
Sbjct: 238 LLLRAAS----------IGNAVDIYGQEKNPTTYNLARMNMLLHGIKFS-----NFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP----RKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP ++
Sbjct: 338 ILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +    + E+    +  I+A+  +  +    K +  + +   ++I++ Y 
Sbjct: 391 FYGTSIPTCILVFKKCRKED--DNILFIDASKEFEKV----KTQNKLREQHIQKIVETYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 DRKEIEKYSHLASLQEIAENDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRAELDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEVYLKE 512


>gi|60681329|ref|YP_211473.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           NCTC 9343]
 gi|60492763|emb|CAH07537.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           NCTC 9343]
          Length = 513

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 213/554 (38%), Gaps = 71/554 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M+E       L   +WK A ++ G+   +DF    L     + L   +E   +   +   
Sbjct: 1   MSEEQQRI--LKAQLWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDN 58

Query: 59  --------------YLAFGGSNIDLESFVKVAGYSFYNTS------EYSLSTLGSTNTRN 98
                                 I+   +     Y F   +      ++ L  LG +    
Sbjct: 59  TDFRTVWADGNEDIKQELRNVAIEDIGYFLEPEYLFSTLATDAKDGKFILEALGQSFKHI 118

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVM 155
              +  A   D+ + +F+D D +S        +K  L+  +      I+         ++
Sbjct: 119 EDSTLSADSEDDFQNLFDDVDLTSVKLGKTADDKNKLISNLLLALDEIDFCLKDTEIDIL 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE++I  F +   + A +F TP+ V  +   ++    + +        R +YDPTCG
Sbjct: 179 GDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKERV--------RNVYDPTCG 230

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K       +GQE  P T+ +    ML+     D       +
Sbjct: 231 SGSLLLSVA----------KEGFAEFIYGQEKNPTTYNLARMNMLLHNKRYDK-----FD 275

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+ G TL  D F  + F   ++NPPF  +W  D     K + +    R G  L   S   
Sbjct: 276 IRSGDTLEDDQFENEVFDAIVANPPFSAQWSADS----KFNTDDRFSRAG-ALAPKSKAD 330

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALP 394
             F++H+ + L      GG  A V     LF    G+ E +IRR+L+E  + I+AI+ LP
Sbjct: 331 YAFILHMIHHLH----DGGTMACVAPHGVLFR---GASEGKIRRYLIEAKNYIDAIIGLP 383

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L  +K  +    V  I+A+  +  I    K +  ++ +   +I++
Sbjct: 384 ANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKI----KTQNKLSPEHIEKIVN 437

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y +R E  K+S              +  P R     ++     ++A +   K+    +S
Sbjct: 438 TYKNRAEIEKYSHKATIEEIAENDFNLNIP-RYVDTFEEEEEIDIKAVMKEIKMLEAKRS 496

Query: 514 FWLDILKPMMQQIY 527
                +   ++++ 
Sbjct: 497 ELDRQIDVYLKELG 510


>gi|288929352|ref|ZP_06423197.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329454|gb|EFC68040.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 517

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/549 (21%), Positives = 209/549 (38%), Gaps = 73/549 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVREKYLA 61
              L + +W+ A  L G+   +DF    L F   + L   +E           V  K L 
Sbjct: 6   QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANEALVDDEVTFKELW 65

Query: 62  FGGSNIDLESF--------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
              ++ D+ES         ++  GY       +S          N L     S       
Sbjct: 66  AMENDDDIESLQQEVKTECLENIGYFIEPHFLFSSIIEKIKKKENILPILERSLKRIEDS 125

Query: 108 ------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                  ++   +F D D +S        +K  L+  +      I+   +   +  ++ +
Sbjct: 126 TLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGD 185

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE++I +F +   + A +F TP++V H+   ++      L        R +YDPTCG+G
Sbjct: 186 AYEYMISQFAAGAGKKAGEFYTPQEVSHILAEIVTLGHARL--------RNVYDPTCGSG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A N          I       GQE  P T+ +    ML+  ++       +  I+
Sbjct: 238 SLLLRAAN----------IGHANEIFGQEKNPTTYNLARMNMLLHGIKFS-----NFRIE 282

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G TL  D F   +F   ++NPPF  +W     A EK + +    + G  L         
Sbjct: 283 NGDTLEADAFGDTQFDAVVANPPFSAEWS----AAEKFNNDDRFSKIGR-LAPRKTADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTD 396
           F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP +
Sbjct: 338 FILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +F+ T+I T + +    + E+    +  I+A+  +  +    K +  +     ++I+D Y
Sbjct: 391 IFYGTSIPTCILVFKKCRKEDE--NILFIDASKEFEKV----KTQNKLRPQHIQKIVDTY 444

Query: 457 VSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R E  K+S +            +  P  +    ++  +         ++L        
Sbjct: 445 RDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELETKRAELD 504

Query: 516 LDILKPMMQ 524
            +I   + +
Sbjct: 505 KEIEVYLKE 513


>gi|332877056|ref|ZP_08444807.1| type I restriction-modification system, M subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684946|gb|EGJ57792.1| type I restriction-modification system, M subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 517

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/548 (20%), Positives = 211/548 (38%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLAF 62
              L + +W+ A  L G+   +DF    L F   + L   +E   +   E         +
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIENFVNGELEDDEVSFKELW 65

Query: 63  GGSNIDLESFVKVA--------GYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD-- 109
              + D     +          GY       +S    S     N    LE  +    D  
Sbjct: 66  NMDDEDTAELQEEVKDLCLSEIGYFIEPQYLFSSVIESIKKKENILPMLERSLKRIEDST 125

Query: 110 -------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                  +   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGRDSEEDFGGLFSDIDLASPKLGKTADDKNTLISNVLLALDEIKFGVEASKEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++    + L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTIGHERL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I   +  +GQE  P T+ +    ML+  ++    +     I+ 
Sbjct: 238 LLLRAAH----------IGNAVEIYGQEKNPTTYNLARMNMLLHGIKFSDFK-----IEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEADAFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP----RKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    + GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP ++
Sbjct: 338 ILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +L   + E+    +  I+A+  +  +    K +  +  +  ++I+D Y 
Sbjct: 391 FYGTSIPTCVLVLKKCRKED--DNILFIDASKEFEKV----KTQNKLRPEHIKKIVDTYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L     +   
Sbjct: 445 DRKEIEKYSHLATLQEIADNDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRANLDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEGYLKE 512


>gi|218767944|ref|YP_002342456.1| putative type I restriction-modification system protein [Neisseria
           meningitidis Z2491]
 gi|121051952|emb|CAM08258.1| putative type I restriction-modification system protein [Neisseria
           meningitidis Z2491]
          Length = 514

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++    +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEIS 492


>gi|294793954|ref|ZP_06759091.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
 gi|294455524|gb|EFG23896.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
          Length = 531

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/548 (20%), Positives = 214/548 (39%), Gaps = 73/548 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   ++  A+ L G      +   +L     + L   L    S V + Y +    +  
Sbjct: 3   AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLE--STVVKAYKSLDEYDTV 60

Query: 69  LESFVKVAGY------------------SFYNTSEYSLSTLGSTNTRN--------NLES 102
            +       Y                   ++   +Y  S L ++   N        N   
Sbjct: 61  AKQTELYKSYILNDKSKAFFIATMSDTLGYHIEPQYLFSELANSVKDNSFELVHLRNAFV 120

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            + +     + +F+D D  S    ++   +   + ++ K    +++        V+ + Y
Sbjct: 121 RLETAYKQFEGLFDDIDLDSKQLGVDANQRNITISEVIKKLDEVDVLGH--DGDVIGDAY 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V ++   ++    +           T+YDPT G+G  
Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSNMMAQIVTIGQED------TPSFTVYDPTMGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++         P  +  HGQEL   T+ +    +++  + ++ +R     +  G
Sbjct: 233 MLNVRKYL-------NNPDRVQYHGQELNVTTYNLARMNLILHEVNAEDQR-----LHNG 280

Query: 280 STLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   S     
Sbjct: 281 DTLNKDWPTDEPYMFDSVVMNPPYSAKWSADPTFMD----DARFNRYGK-LAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGIIRKKLLEDGSIYAVIGMPANL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   +       V  I+A++ +T  +N    +  +  +  ++I+D Y 
Sbjct: 389 FFGTSIPTTVIILKKNRPGR---DVLFIDASNNFTKFKN----QNKLEPEHIKRIVDTYK 441

Query: 458 SRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +RE   K+S +  ++        +  P  +    ++  +  +      + +         
Sbjct: 442 NRESIEKYSYLAPFKEIKENDFNLNIPRYVDTFEEEAPIDMVVLGKEMKAIKEEEAKLEK 501

Query: 517 DILKPMMQ 524
           +I   ++Q
Sbjct: 502 EIYDMLLQ 509


>gi|28867248|ref|NP_789867.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850482|gb|AAO53562.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 568

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 115/563 (20%), Positives = 220/563 (39%), Gaps = 74/563 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M +   S  +L +++W++A  L G    +DF   I     L+R     +   + +RE+  
Sbjct: 33  MADK-LSLETLESWLWESANILRGSIDSSDFKNYIFGLLFLKRYNDVFDERVTKLREEEN 91

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           L++G +  ++E         +  ++ +      + N    L+   A+   N     +   
Sbjct: 92  LSYGEAQEEIED----KWGKYPISARWFDLISRTENIGEALDKAFATIEANNPE-LQHVL 146

Query: 120 FSSTIA--RLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
            ++     R+     L ++ ++F+  +L  D +    ++ + YE+LI++F  +  +   +
Sbjct: 147 TATQYGDKRVLADATLQRLLRHFNQYKLGNDDLYKADMLGDAYEYLIKQFADDAGKKGGE 206

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHK 235
           F TP+ VV L   L+           P    ++YDPTCG+GG L ++ +HV+        
Sbjct: 207 FYTPKAVVQLVVELI----------DPRPGHSVYDPTCGSGGMLVESAHHVSGLPDGTLM 256

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
             P ++ +GQE    T A+    + +  + +   R        G TL +         K 
Sbjct: 257 GKPNVLLYGQEKNLGTWAIAKLNLYLHNMHASIER--------GDTLVEPKHLDGDYLKT 308

Query: 292 FHYCLSNPPFGKK--WEKDKDAVEKEHKNG-------------ELGRFGPGLPKISDGSM 336
           F   ++NPPF  K  W   + + E E +NG               GR   G+P      +
Sbjct: 309 FDRVIANPPFSAKSWWTPLELSNENEQENGKKVKAPNYKQVSDPYGRLVYGVPPRGYADL 368

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDL 386
            F  H+   L+      GR  ++L    LF       E +IR  LL            D+
Sbjct: 369 AFAQHMLASLKA----DGRMGVILPHGVLFRS---GEEGKIREGLLFGTGAASGNQPGDV 421

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           IEAIV LP+ LF+ T I   + IL+ +K    + KV +I+ +  +     EGK +  ++ 
Sbjct: 422 IEAIVGLPSALFYNTGIPACVLILNKQKPSALKDKVIIIDGSRDYL----EGKAQNSLHA 477

Query: 447 DQRRQILDIYVSR-----ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +   +I+  + +      E   + R++           +     +        +      
Sbjct: 478 EDILRIVSTHKAAFEQQVEVENYCRLVTLDEIRSNDGNLNIVRYIDNGESDEVVNVAATL 537

Query: 502 ITWRKLSPLHQSFWLDILKPMMQ 524
                L+         + + +M+
Sbjct: 538 AHMATLAKEEAQIDQRLNRYLME 560


>gi|309379401|emb|CBX21968.1| putative DNA adenine methyltransferase subunit of Type I
           restriction/modification system [Neisseria lactamica
           Y92-1009]
          Length = 513

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/533 (21%), Positives = 202/533 (37%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 119 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       + F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSRPFDAVVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 388 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREIIDIKQLNAEI 490


>gi|59713720|ref|YP_206495.1| type I restriction-modification system methylation subunit [Vibrio
           fischeri ES114]
 gi|59481968|gb|AAW87607.1| type I restriction-modification system methylation subunit [Vibrio
           fischeri ES114]
          Length = 488

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/486 (23%), Positives = 204/486 (41%), Gaps = 43/486 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L  ++W  A  L G     D+ + I P    +R+    +       E  LA    +
Sbjct: 3   TQQELEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRICDVYDEE----FENALAESDGD 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSS 122
           ++  +F +   +     + ++     +TN     +N + +   +  D  + IF D  +++
Sbjct: 59  LEYAAFAENHHFQVPKGAHWNDVRETTTNIGLALQNAMRAIEKANPDTLEGIFGDASWTN 118

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL  A L   + +++S   L+   VPD  + N YE+LI+ F  +    A +F T R 
Sbjct: 119 K-ERLSDAMLT-NLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTNRT 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L T ++          +P    ++YDPTCG+GG L +   H+ D G  ++    L  
Sbjct: 177 VVKLMTMIM----------APQPGESVYDPTCGSGGLLLNCALHLKDEGKEYRT---LKL 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE+   T A+    M +  +E     D+ +     +    +    K+F+  L+NPP+ 
Sbjct: 224 YGQEINLLTSAIARMNMFMHGIE---EFDIVRGNTLSNPGLLENDELKKFNVILANPPYS 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K         K  ++   GR   G P        F  H+   L+L   G GR+  +   
Sbjct: 281 IKSWD-----RKAFESDPYGRNVWGTPPQGCADYAFQQHIQKSLDL---GNGRSISLWPH 332

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E+ +RR ++E D +E ++ L  +LF+ + +   L I    K E ++ K+
Sbjct: 333 GILFRD----AETAMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIESKKDKI 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVL 481
             INA       +N G     ++     +I + Y   EN   F+ ++D +    ++  + 
Sbjct: 389 LFINAVKEVRQDKNIG----YLDQVHIDKIFNAYNKFENEDSFAVLVDKQEVLDKKANMA 444

Query: 482 RPLRMS 487
             L + 
Sbjct: 445 INLYIR 450


>gi|317481426|ref|ZP_07940493.1| N-6 DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902411|gb|EFV24298.1| N-6 DNA methylase [Bacteroides sp. 4_1_36]
          Length = 517

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/548 (20%), Positives = 211/548 (38%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG-- 64
              L + +W+ A  L G+   +DF    L F   + L   +E    +A+ +  ++F    
Sbjct: 6   QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEAYANNALVDDEVSFKELW 65

Query: 65  --SNIDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
              + D     +          GY    T  +S          N L     S        
Sbjct: 66  TMEDEDAAELQEELKKQCLEGVGYFIEPTYLFSSVIDRIKKKENILPILERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGHDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIKFGVEASEEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMIGQFAAGAGKKAGEFYTPQEVSQILAEIVSIGHARL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A           K+   +  +GQE  P T+ +    ML+  ++       +  I+ 
Sbjct: 238 LLLRAA----------KVGHAVDIYGQEKNPTTYNLARMNMLLHGIKFS-----NFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDAFGDTQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP----KKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI+ LP ++
Sbjct: 338 ILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + ++   + E+    +  I+A+  +  +    K +  +     ++I++ Y 
Sbjct: 391 FYGTSIPTCILVMKKCRKED--DNILFIDASKEFEKV----KTQNKLRPQHIQKIVETYR 444

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            RE   K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 DREEIEKYSHLATLQEVADNDYNLNIPRYVDTFEEEEPIDIKAVMSEIKELEAKRAELDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIDVYLKE 512


>gi|91205221|ref|YP_537576.1| Type I restriction-modification system, M subunit [Rickettsia
           bellii RML369-C]
 gi|91068765|gb|ABE04487.1| Type I restriction-modification system, M subunit [Rickettsia
           bellii RML369-C]
          Length = 504

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/527 (21%), Positives = 201/527 (38%), Gaps = 57/527 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+       + N  W   +         ++   IL     + +    +  +    E+  
Sbjct: 1   MTDQ-LKQNQINNAAWAACDTFRRVVDAANYKDYILVMLFFKYISDVWKAHKKECEERDK 59

Query: 61  AFG---GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN----AKA 113
                  S ++ E FV   G +FY+     +    S +    +   +           K 
Sbjct: 60  DEPSRIQSQLEREDFVIPKGANFYDI---FVQREKSDSIGELINKALNEIEQKNLAKLKG 116

Query: 114 IFEDFDFSSTIA---RLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F + DF+S        E+   L  + ++F    ++L PD V + ++   Y +LI RF S
Sbjct: 117 VFRNVDFNSEFNLGKTKERNRRLKMLLEDFGKLELDLSPDRVNEDIIGECYIYLISRFAS 176

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  + A +F TP  V  L   L           +P     + DP CG+G  L  A   V 
Sbjct: 177 DAGKKAGEFYTPTAVSTLLAKLA----------APKSGDIICDPACGSGSLLLRAAKEVG 226

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D             +GQE+   T A+    M +   E          +     L  D   
Sbjct: 227 DNN--------YALYGQEMNNATWALAQMNMFLHS-EGGAHIYWGDTLNHPEILENDKL- 276

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   ++NPPF  +    ++A    HK     RF  G+P  + G   F+ H+    E+
Sbjct: 277 -MKFDIVIANPPFSLEKWGHENAANDNHK-----RFWRGIPPKTKGDYAFISHMI---EV 327

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRAAIV+    LF G     E  IR+ L+E++L++A++ LP +LF  T I   + 
Sbjct: 328 TKPLSGRAAIVVPHGVLFRGGT---EGLIRQSLIEDNLLDAVIGLPANLFTSTGIPVAIL 384

Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGK 463
           +    +       +R  V  I+A+  +      GK +  + ++   +I+D Y +R+   K
Sbjct: 385 VFDRSRETGGQNNQRKDVLFIDASSSF----KAGKGQNFLEEEHINKIVDTYKNRKAIEK 440

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +S + +       +  +  P  +    ++  +   E     ++L   
Sbjct: 441 YSHLANIHEIRENKHNLNIPRYVDTYEEEEEIDVAELQKEIQQLEKE 487


>gi|239629954|ref|ZP_04672985.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527566|gb|EEQ66567.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 532

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/562 (20%), Positives = 217/562 (38%), Gaps = 70/562 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M + T  + +L   +W +A+ L      +++   +L     + L   +    S   E+  
Sbjct: 1   MAQMT--SQTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 60  -----------LAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                       A+   ++  +    V+   GY       ++       +    LE    
Sbjct: 59  TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQLEDLSQ 118

Query: 106 SFSDNAK------AIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           SF D  +       +FED D  S        ++  ++  + K  S ++L      + ++ 
Sbjct: 119 SFRDIEQSSEFFSGLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQN-TNDILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F S+  + A +F TP+ V  L T + +   + +         T+YDPT G+
Sbjct: 178 DAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDPTMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +  +  S       +   GQEL   T+ +    M++  +        ++++
Sbjct: 232 GSLLLNARRYSNERLS-------INYFGQELNTSTYNLARMNMILHGV-----PINNQHL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISD 333
               TL +D    +   F   + NPP+   W+  K             RF   GL   S 
Sbjct: 280 HNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSKGTEND-------PRFVSYGLAPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G   IVL    LF G A   E  IR+ LLEN  I+ ++ L
Sbjct: 333 ADFAFLLHGYYHLK----DTGVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVIGL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + +L   +T      V  I+A+  +   +N    +  + DD  ++IL
Sbjct: 386 PANIFFNTSIPTTVTVLKKSRTTR---DVLFIDASKEFEKAKN----QNHLTDDNIQKIL 438

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           + Y++R++  K++ +  +         +  P  +     +  +  ++     +K      
Sbjct: 439 ETYINRKDVDKYAHLASFDEIKENDFNLNIPRYVDTTEPEKPVDVVKVVADIKKNDEEIA 498

Query: 513 SFWLDILKPMMQQIYPYGWAES 534
               ++ K     +     A  
Sbjct: 499 RLSSELAKDFDDLVANNDEAAK 520


>gi|91217919|ref|ZP_01254872.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
 gi|91183896|gb|EAS70286.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
          Length = 505

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/539 (19%), Positives = 204/539 (37%), Gaps = 45/539 (8%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+     +   +   +W   +   G    +++   IL F  ++ L    +   +A++E+Y
Sbjct: 1   MSNKIKPTQDQINAALWNACDTFRGAVDSSEYKNYILVFMFIKYLSDVWKDHYNALKEQY 60

Query: 60  LAFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                     +  E FV     SF    E+   T               S  +    +F 
Sbjct: 61  GDDEELIQRKLKRERFVLPDKCSFDYIYEHRNDTDIGEKIDKIFAQIEESNLEKLDGVFR 120

Query: 117 DFDFSSTI--ARLEKAGLLYKICKNFS--GIELHPD--TVPDRVMSNIYEHLIRRFGSEV 170
           +  F+S       ++   L  +  +F+   ++  P        ++   Y +L+ +F S  
Sbjct: 121 NISFNSDKLGQTKDRNRRLKNLINDFAKPELDFRPSLWEGKQDILGEAYMYLLEKFASGA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP++V  L   L+          SP     ++DPTCG+G  L        D 
Sbjct: 181 GKKGGEFFTPKEVSGLLAKLV----------SPKEGDRIFDPTCGSGSLLIKVAEETKDA 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +         +GQE   +T A+      +  ++S     +       +   K+     
Sbjct: 231 KGN--TTNNFAIYGQESNGDTWALSKMNCFLHTMDSAQ---IEWCDTINNPKLKEGDALM 285

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   ++NPPF       ++A     +     RF  G+P  S G   F++H+        
Sbjct: 286 KFDIVVANPPFSLDKWGHENA-----EADRYKRFLRGVPPKSKGDYAFILHMIE----TT 336

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+  +++    LF G A   E +IR+ L+E +L+EA++ LPT+LF+ T I   + I 
Sbjct: 337 LPTGKVGVIVPHGVLFRGSA---EQKIRQKLIEENLLEAVIGLPTNLFYGTGIPAAILIF 393

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
           +  KT E    +  ++A+  +    ++GKK+ ++      +I+  Y   +   K+S ++ 
Sbjct: 394 NKAKTTE---DILFMDASKEF----DDGKKQNVLRTQDINKIVTTYKDFKTIEKYSSVVK 446

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                     +  P  +    ++  +   E      KL         ++ K + +  Y 
Sbjct: 447 PAEVAENDFNLNIPRYVDTFEEEEPVDIAEVQQNIEKLEAELVEVRSEMKKHLKELGYE 505


>gi|294495710|ref|YP_003542203.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219]
 gi|292666709|gb|ADE36558.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219]
          Length = 499

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/532 (20%), Positives = 210/532 (39%), Gaps = 57/532 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L  ++W  A  L G     ++  +I P    +R+    +       E+     G +
Sbjct: 6   SQQQLEQYLWGAATLLRGVIDPGEYKSIIFPLMFFKRISDVYDEEYQQALEE----SGGD 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSS 122
            +   F +   +     + ++     S N    +++ +        D    IF D ++++
Sbjct: 62  QEYAEFAENHRFQVPAGAHWNDVRNVSINVGQAIKTAMDDIEKANPDKLTGIFGDANWTN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    L+  + ++FS + L    VP     + YE+LI++F  +    A +F T R 
Sbjct: 122 K-NRLSDNILI-DLIEHFSTVNLSITNVPQDEFGSGYEYLIKKFADDSGHTAAEFYTNRT 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L + ++           P    ++YDPTCG+GG L +A     + G  ++    +  
Sbjct: 180 VVRLMSLIV----------DPKSGESIYDPTCGSGGMLLNAALLAKEKGQEYRN---IKL 226

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE+   T A+    M +   E          + +G TLS   F      K+F   ++N
Sbjct: 227 YGQEINIITSAIARMNMFLHGFED-------FYVIRGDTLSNPAFVEDDRVKKFDIVIAN 279

Query: 299 PPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PP+  KKW +D         +    R   G P        F  H+   ++      GR A
Sbjct: 280 PPYSIKKWNRDG------WIHDSWNRNTYGTPPQGCADYAFFQHIIASMK---EDTGRCA 330

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+     L      + E ++R+ ++ENDLIE ++ L  +LF+ +++ + + I +  K E 
Sbjct: 331 ILYPHGVLER----NNEKKMRKEIIENDLIECVIGLGKNLFYNSSMKSCIVICNKNKPEN 386

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF--G 474
           R+ K+  I+A D      +    +  +  +   +I   Y   +   KF+  +D       
Sbjct: 387 RKNKILFIDAKDE----ISINTTQAKLESEHIDKIHAAYSDFKSIEKFANAVDIEEIRDK 442

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQ 524
              + +   +  +  +D+  L          W K S   +    ++   + +
Sbjct: 443 DYNLNIRMYVDNNPYIDRVLLDTPLEQYVDDWMKNSEKVKQSTDELKVALKE 494


>gi|291167073|gb|EFE29119.1| type I restriction-modification system, M subunit [Filifactor
           alocis ATCC 35896]
          Length = 510

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/533 (19%), Positives = 193/533 (36%), Gaps = 63/533 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MAGKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +         F+   E   S + S           ++    I   +   K 
Sbjct: 59  ---GDGFENDRDAYAEENIFFVPKEARWSKISSAAHTPEIGTVIDDAMRAIEKENITLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F +    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    A+L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSD 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++      +       T   D+    + 
Sbjct: 222 NRGN---ISVYGQESNADTWKMAKMNMAIRGIDA------NFGSYHADTFFNDIHKTLKS 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  E  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGA-------DKLKEDVRWKYGTPPSGNANYAWIQHMIHHLAA---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +  +G  E EIR+ ++E+DL+E IVALPT LF+   I   LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQSSG--EGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENG----- 462
            K  +++GK   I+A  +   +  + +       +         +   +   +NG     
Sbjct: 380 NK--KQKGKTLFIDARKMGYMVDRKHRDFTEGIQEDGSLGDIDLLAKTFEDFQNGVLEEK 437

Query: 463 -KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             FS +        +   +L P R   I ++        +   R  S L   F
Sbjct: 438 KGFSAIASIEDIAKQDY-ILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSDMF 489


>gi|302347045|ref|YP_003815343.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302151002|gb|ADK97263.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 518

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/549 (21%), Positives = 206/549 (37%), Gaps = 73/549 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVREKYLA 61
              L + +W+ A  L G+   +DF    L F   + L   +E           V  K L 
Sbjct: 6   QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANDALVDDEVTFKELW 65

Query: 62  FGGSNIDLESF--------VKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD- 109
               + D+E          ++  GY       +S    S     N    LE  +    D 
Sbjct: 66  SMEKDTDIEELQESVKTECIENIGYFIEPNFLFSSVIESIKKKENILPILERSLKRIEDS 125

Query: 110 --------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                   +   +F D D +S        +K  L+  +      I+   +   +  ++ +
Sbjct: 126 TLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQEIDILGD 185

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G
Sbjct: 186 AYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHARL--------RNVYDPTCGSG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A +          I       GQE  P T+ +    ML+  ++       +  I+
Sbjct: 238 SLLLRAAS----------IGHANEIFGQEKNPTTYNLARMNMLLHGIKFS-----NFRIE 282

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G TL  D F   +F   ++NPPF  +W    D    + +  + GR  P           
Sbjct: 283 NGDTLEADAFGDTQFDAVVANPPFSAEWSA-ADKFNNDDRFSKAGRLAP----RKTADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTD 396
           F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI+ LP +
Sbjct: 338 FILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAIIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +F+ T+I T + +    + E+    +  I+A+  +  I    K +  +     ++I+D Y
Sbjct: 391 IFYGTSIPTCILVFKKCRKED--DSILFIDASKDFEKI----KTQNKLRPQHIQKIVDTY 444

Query: 457 VSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R E  K+S +            +  P  +    ++  +         + L        
Sbjct: 445 RDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIHAVMKEIKDLEAKRADLD 504

Query: 516 LDILKPMMQ 524
            +I   + +
Sbjct: 505 KEIEGYLKE 513


>gi|314950056|ref|ZP_07853344.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
 gi|313643614|gb|EFS08194.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
          Length = 492

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 117/520 (22%), Positives = 203/520 (39%), Gaps = 63/520 (12%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MTE    ++ SL   +W +A+ L       ++   +L     + L   +    S + E+ 
Sbjct: 1   MTEQIEKNSKSLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60

Query: 60  ------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--------- 98
                        AF  ++I  +   ++     Y  +     T       +         
Sbjct: 61  TDDLNKAQDLYVEAFKDADIKDDLLYELKDEFSYTIAPALTFTAQVAAIHDGSFQLEDLV 120

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSN 157
                I   S+N + +FED D  S             I      +E L+       V+ +
Sbjct: 121 QGFRDIEQSSENFENLFEDIDLYSKKLGSTPQKQNKTIADVMKELEGLNMAGHAGDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP+ V  L T ++L   +           ++YD T G+G
Sbjct: 181 AYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKED------KKGFSVYDATMGSG 234

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +A  +    G+       +   GQEL   T+ +    M++  +        ++++ 
Sbjct: 235 SLLLNAKKYSHQPGT-------ISYFGQELNTSTYNLARMNMILHGV-----PIANQHLH 282

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              TL +D  T +   F   L NPP+  KW  DK  ++    +     +G  L   S   
Sbjct: 283 NADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD----DPRFSAYGV-LAPKSKAD 337

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+ ++ LP 
Sbjct: 338 FAFLLHGYYHLK----DTGVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDTVIGLPA 390

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T+I T + IL   +    +  V  I+A+  +  I    K +  + D     IL+ 
Sbjct: 391 NIFFNTSIPTTVIILKKDRA---KKDVLFIDASQDFEKI----KTQNTLRDYHIDAILEA 443

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           Y +R    K++ + ++         +  P  +    ++ G
Sbjct: 444 YKTRTIKDKYAYVAEFDEIVENDYNLNIPRYVDTFEEEEG 483


>gi|322377802|ref|ZP_08052291.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M334]
 gi|321281225|gb|EFX58236.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M334]
          Length = 535

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 216/566 (38%), Gaps = 65/566 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 4   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 63

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNL--------E 101
             A  E Y  +       E  + V     ++    E + + L +                
Sbjct: 64  LEAALEVYRNYYEDADTHEDLLAVMKDELNYSIKPELTFTALVARVNEGTFQLEDLAQGF 123

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++   +  + K  + +++        ++ + 
Sbjct: 124 RDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLGDA 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +        +  T+YD T G+G 
Sbjct: 182 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QLGFTIYDATMGSGS 235

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 236 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 283

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW  +   +     +     FG  L   S    
Sbjct: 284 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSANSGFLN----DPRFSPFGK-LAPQSKADF 338

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 339 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 392

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T+     V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 393 IFFNTSIPTTVIILKKNRTDR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILEAY 445

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF+ +  Y         +  P  +    ++      +        +   Q+  
Sbjct: 446 KSREEMDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINTTNEAIQNQT 505

Query: 516 LDILKPMMQQIYPYGWAESFVKESIK 541
             +L+ + Q       A++  KE +K
Sbjct: 506 ASLLEMLGQLHGTTPEADAEFKEFLK 531


>gi|78046069|ref|YP_362244.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034499|emb|CAJ22144.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 538

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 114/550 (20%), Positives = 210/550 (38%), Gaps = 75/550 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTKDDQ--KELGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGSDY 58

Query: 60  ---------------LAFGGSNIDLESFVKVAGYSFYNT-------------SEYSLSTL 91
                          + +  +  D+ +F +      +               ++     L
Sbjct: 59  PDAKAIGNSDKTPLSVWYAANPDDVAAFEQQMRRKAHYVIKPKYLWGNIVNLAKTQSHDL 118

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TV 150
             T  +        SF    + +F + + +S     +      K+C   S I      + 
Sbjct: 119 LDTLQQGFKHIEEDSFESEFQGLFSEINLASDKLGRKYDDRNAKLCSIISEIARGMALST 178

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI +F +   + A +F TP+++ ++ +A++            G + +++
Sbjct: 179 KTDSLGDAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEPKTGPRGKLDSVF 238

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+G  L +  N +   G           +GQE    T+ +    ML+  +     +
Sbjct: 239 DFACGSGSLLLNIRNRMTSSGGSIG-----KIYGQEYNVTTYNLARMNMLLHGV-----K 288

Query: 271 DLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWE-KDKDAVEKEHKNGEL 321
           D    I  G TL  D    +        RF   ++NPPF  +WE  +  A +   KN   
Sbjct: 289 DTEFEIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQDARFKN--- 345

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                G+   S     FL+H    L+      G  AI+L    LF    G  E++IRR L
Sbjct: 346 ----HGVAPKSAADFAFLLHGLQYLK----DDGVMAIILPHGVLFR---GGKEADIRRKL 394

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP +LF+ T I   + +L   K  +    V  INA + +T     GK++
Sbjct: 395 LDDGHIDTVIGLPPNLFYSTGIPVCILVLKKCKKPD---DVLFINACEQFTR----GKRQ 447

Query: 442 RIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARL 498
             + D+  ++I+D Y +R E  ++S+ +           + + R +  +    +  L  +
Sbjct: 448 NQLTDEHIKRIVDTYKNRDEQERYSKRISMTRIAEEGYNLNISRYVSTAKADKEINLEAV 507

Query: 499 EADITWRKLS 508
             D+   +  
Sbjct: 508 HVDLKAIESE 517


>gi|297380050|gb|ADI34937.1| type I restriction-modification system, M subunit [Helicobacter
           pylori v225d]
          Length = 527

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 120/550 (21%), Positives = 212/550 (38%), Gaps = 71/550 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSAVREKYL 60
              L N IWK A +L G     DF + +L     R +   +       E  R    +  L
Sbjct: 14  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERERDPSFDYAL 73

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
                    +  +      F   S    + L +  T  +L   + +              
Sbjct: 74  LSDEEAESAKKDLIEEKGFFIPPSALFCNVLKNAPTNEDLNVTLQNIFNEIEKSSLGFES 133

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
            +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L+
Sbjct: 134 EENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQKSGIDVFGDAYEYLM 193

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 194 AMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQF 245

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D              GQE+   T+ +C   M +  +          +I  G TL 
Sbjct: 246 SKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIAHGDTLL 294

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                  + F   +SNPP+  KW  D + +    +     RF P   L   +   + F M
Sbjct: 295 DPKHEDDEPFDAIVSNPPYSTKWAGDSNPILINDE-----RFSPAGVLAPKNAADLAFTM 349

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L    +  G AAIV     L+ G A   ES+IR +L++N+ I+ ++ALP +LFF 
Sbjct: 350 HMLSYL----SNSGTAAIVEFPGVLYRGNA---ESKIREYLVKNNFIDCVIALPDNLFFG 402

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +L   K ++       I+A++ +        K+  + +  + +IL  Y  R+
Sbjct: 403 TSIATCILVLKKNKQDDT---TLFIDASEEFVK----EGKKNKLKEHNKEKILQTYTERK 455

Query: 461 -NGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               FS + +            V R +      +   +  L  +I+        QS   +
Sbjct: 456 AIKHFSALANIEKIKENDYNLSVNRYVEQEDTKEIIDIKALNGEISQI---VEKQSVLRN 512

Query: 518 ILKPMMQQIY 527
            L+ +++++ 
Sbjct: 513 SLENIIKELE 522


>gi|311033111|ref|ZP_07711201.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus sp. m3-13]
          Length = 538

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 217/558 (38%), Gaps = 51/558 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +A  + + +W+ A  L G    +++   ILPF   R L    E     + + E Y     
Sbjct: 3   NARDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQEEYLKVNDLEEFYEVTDD 62

Query: 65  SNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKAI----- 114
           +  +  LE   K  GY+      +        N +    + +    SF+ NAK       
Sbjct: 63  TEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTNAKRNAVAEA 122

Query: 115 -----FEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                F D +   T    +  E+A  L  I    +      D+  D ++ ++YE+LI +F
Sbjct: 123 DFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFTFKDDSGRD-ILGDVYEYLIGQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP +V  +   ++ +  D    +       +YDPT G+G  L      
Sbjct: 182 AANAGKKGGEFYTPHEVSQILAKIVTNDADGTGDQ-----FRVYDPTMGSGSLLLTVQKE 236

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +      +      +GQEL   T+ +    +++  +          +         + 
Sbjct: 237 LPNGDKEGSVE----FYGQELNTTTYNLARMNLMMHGVNYRNMELKRADTLDADWPFAEK 292

Query: 287 FTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +   +F   +SNPP+ + W+      EK+ +       G G+   S     F++H  
Sbjct: 293 DGTQIPLKFDAVVSNPPYSQNWDTKDVDREKDTRFK-----GFGVAPASKADYAFVLHGL 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L    +  G  AIVL    LF    G+ E +IR+ +++N+L++ ++ LP +LF+  +I
Sbjct: 348 YHL----DKAGTMAIVLPHGVLFR---GASEGKIRKNIIDNNLLDTVIGLPPNLFYGASI 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   R+  + +  +  I+A+  +   ++    +  +  +   +I+  Y +R++  
Sbjct: 401 PTCVLVFKGREARKSKD-ILFIDASKEFKKGKS----QNKLTAENINKIIGTYSNRKDVE 455

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K++ +            +  P  +    ++  +   +      ++     + + ++ + M
Sbjct: 456 KYAHVASLDEIKDNDYNLNIPRYVETFEEEGIIPLSQVSQELVEIKAEIANSYDNLFELM 515

Query: 523 MQQIYPYGWAESFVKESI 540
            +       A+  + + I
Sbjct: 516 NELNGTNDEAKEELSKFI 533


>gi|315586486|gb|ADU40867.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 529

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 118/542 (21%), Positives = 205/542 (37%), Gaps = 78/542 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQAPKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 53  SAVREKY--------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           +    ++        L+   +    E  +   G+ F   S    + L +     +L   +
Sbjct: 61  NRQEREHDLSFDYALLSDEEAEGAKEGLIVEKGF-FIPPSALFCNVLKNAPNNGDLNVTL 119

Query: 105 ASF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPD 148
            +               +N K +F D D +S     +   +   L KI +    ++L   
Sbjct: 120 QNIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKIIQAIGDMQLGDY 179

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K       
Sbjct: 180 QKSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK------- 232

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      + D              GQE+   T+ +C   M +  +   
Sbjct: 233 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYS 285

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL        + F   +SNPP+  +W  DK+ +    +     RF P
Sbjct: 286 K-----FHIAHGDTLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPILINDE-----RFSP 335

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L       + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ 
Sbjct: 336 AGVLAPKKTADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKE 388

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  +
Sbjct: 389 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKL 441

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEAD 501
            +  R +IL  Y  R+  K FS +              V R +      +   +  L A+
Sbjct: 442 KEHNREKILKTYTERKTIKHFSALASMEKIKENDYNLSVNRYVEQEDTKEVIDIKALNAE 501

Query: 502 IT 503
           I+
Sbjct: 502 IS 503


>gi|229089986|ref|ZP_04221238.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-42]
 gi|228693333|gb|EEL47042.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-42]
          Length = 530

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 114/566 (20%), Positives = 217/566 (38%), Gaps = 65/566 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L + ++  A++L       ++   +L     + L   L            E+Y     
Sbjct: 2   AELNSKLFSAADNLRSKMDAAEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTQEK 61

Query: 60  ---------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                     A    N  +E+ V   GY       +++ T  +       N  N     +
Sbjct: 62  QAQLYRDLLAAEDIKNDLIETLVDTLGYDIEPDYLFNVLTNQAKQNTFQLNDLNKAFIAL 121

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           ++  D    +F+D D  S     +       I +    + ++        V+ + YE LI
Sbjct: 122 STKYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDVDVMGHDGDVIGDAYEFLI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP +V  +   +     ++        + +++DPT G+G  + + 
Sbjct: 182 GQFASEAGKKAGEFYTPHEVSDMMARIAAIGQES------KKLFSVFDPTMGSGSLMLNI 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++   TL+
Sbjct: 236 RNYI-------NFPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR-----LRNADTLN 283

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL+H
Sbjct: 284 KDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLD----DSRFNRYGK-LAPKSKADFAFLLH 338

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF T
Sbjct: 339 GFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGT 391

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + IL   +T      V  I+A++ +T  +N    +  ++ +   +I++ Y  RE+
Sbjct: 392 SIPTTVIILKKNRTTR---DVLFIDASNEFTKGKN----QNKLSKENIDKIVETYKKRED 444

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +  +         +  P  +    ++  +       T +++          +  
Sbjct: 445 VEKYAHVATFDEIKENEFNLNIPRYVDTFEEEAPVDMAAIGSTIQEVRKEKAELESKLYD 504

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAK 546
            +    +     E         N  K
Sbjct: 505 MISSLQFDKENTEWIKGALEVFNRGK 530


>gi|297250308|ref|ZP_06864065.2| type I restriction-modification system, M subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296839226|gb|EFH23164.1| type I restriction-modification system, M subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 514

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 115/533 (21%), Positives = 201/533 (37%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       + F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G     E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGT---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 442 FADKAD--VPHIAQNAAQQTIKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEI 491


>gi|78189087|ref|YP_379425.1| type I restriction-modification system specificity subunit
           [Chlorobium chlorochromatii CaD3]
 gi|78171286|gb|ABB28382.1| type I restriction-modification system specificity subunit
           [Chlorobium chlorochromatii CaD3]
          Length = 527

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 172/473 (36%), Gaps = 59/473 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L   +WK A+ L  +    ++  ++L    L+ +  + E   + ++ +     
Sbjct: 12  QGKQEEPLEKQLWKTADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELYAKLQAEEANGA 71

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 E     A   F+   +   + L S   +      I  F D+A  + E  + S  
Sbjct: 72  DPEDKDE---YKAENVFFVPQDARWNYLQSKAKQPE----IGKFVDDAMDVIEKENASLK 124

Query: 124 -------IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                    +      L ++      I L         V+ +++E+ +  F     +   
Sbjct: 125 GVLPKVFARQNLDPTSLGELIDLVGNIALGDAKARSADVLGHVFEYFLGEFALAEGKKGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TPR VV L   +L           P     ++DP CG+GG    +   V +   H  
Sbjct: 185 QFYTPRSVVELLVEML----------EPYKG-RVFDPCCGSGGMFVHSETFVTE---HQG 230

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T  +C   + IR ++S   +  ++      +   D     +  Y 
Sbjct: 231 KVNDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNNEG-----SFLNDAHKDLKADYI 285

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF                    GR+  G P   + +  ++ H    L       G+
Sbjct: 286 IANPPFNVSDWGGDLMRSD-------GRWQYGTPPTGNANFAWMQHFIYHL----APNGQ 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL----- 410
           A +VL+   L      SGE +IR+ L+EN LI+ IV LP  LF  T I   LW L     
Sbjct: 335 AGVVLAKGAL--TSKTSGEGDIRKALVENGLIDCIVNLPAKLFLNTQIPAALWFLRRDAK 392

Query: 411 ----SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               +N K  +R  ++  I+  +L   I    ++ R ++ +   +I   Y + 
Sbjct: 393 FFVSTNGKFRDRSNEILFIDTRNLGHLI---NRRTRELSKEDIYKIASTYHAW 442


>gi|229526954|ref|ZP_04416351.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae 12129(1)]
 gi|229335566|gb|EEO01046.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae 12129(1)]
          Length = 507

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 102/543 (18%), Positives = 202/543 (37%), Gaps = 57/543 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
               +  S+   +W   +   G      +   IL    L+ +    +      + +Y   
Sbjct: 2   NDKINQDSINKALWNACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDGYKAEYGDE 61

Query: 63  GGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKAIF 115
                ++   E FV     SFY+  E              L +   +      D  K++F
Sbjct: 62  PELIEEMMKNERFVLPKAASFYSLYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++     EK    +L  + ++F+   + L P  V    V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDKLGEEKQKNTILRHLLEDFAKPELNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    ++ DP CG+G  L      V   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDSICDPACGSGSLLMKCGRKVVAN 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +       +GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HGSKQY----ALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E ++ +  RF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLDKWGH-----DEAEHDKFSRFRRGVPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR  +V+    LF G +   E +IR+ L++ +L++ ++ LP  LF+ T I  
Sbjct: 336 LKPK---SGRMGVVVPHGVLFRGSS---EGKIRQQLIDENLLDTVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +    K+++    V  I+A+  + + +N    + ++  +   +I+  Y +  +  K+
Sbjct: 390 AILLFKKNKSDD---NVMFIDASRDFKAGKN----QNLLTQENIAKIVATYHAGNDVDKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +            +  P  +    ++  +  +       +L         ++ K + +
Sbjct: 443 AYVASLEEIKENDYNLNIPRYVDTFEEEEEIDLMAVRAQREQLKAQLTELEAEMAKYLEE 502

Query: 525 QIY 527
             Y
Sbjct: 503 LGY 505


>gi|332829719|gb|EGK02365.1| type I restriction-modification system, M subunit [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 513

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 114/551 (20%), Positives = 204/551 (37%), Gaps = 70/551 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M+E       L   +WK A ++ G+   +DF    L     + L   +E   +   +   
Sbjct: 1   MSEEQQRI--LKAQLWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDN 58

Query: 59  --------------YLAFGGSNIDLESFVKVAGYSFYNTS------EYSLSTLGSTNTRN 98
                                 I+   +     Y F   S      ++ L  LG +    
Sbjct: 59  TDFRTIWTEGDEDIKQELRNVAIEDIGYFLEPKYLFSTLSADAKDGKFILEALGQSFKHI 118

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVM 155
              +  A   D+ + +F+D D +S        +K  L+  +      I+         ++
Sbjct: 119 EDSTLSADSEDDFQNLFDDVDLTSAKLGKTADDKNKLISNLLLALDEIDFCLKDTEIDIL 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE++I  F +   + A +F TP+ V  +   ++    + +        R +YDPTCG
Sbjct: 179 GDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKERV--------RNVYDPTCG 230

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K       +GQE  P T+ +    ML+     D        
Sbjct: 231 SGSLLLSVA----------KEGFAEFIYGQEKNPTTYNLARMNMLLHNKRYDK-----FE 275

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+ G TL  D F  + F   ++NPPF  +W  D+    K + +    R G  L   S   
Sbjct: 276 IRSGDTLEDDQFESEVFDAIVANPPFSAQWSADR----KFNTDDRFSRAG-ALAPKSKAD 330

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALP 394
             F++H+ + L      GG  A V     LF    G+ E +IRR+L+E  + I+AI+ LP
Sbjct: 331 YAFILHMIHHLH----DGGTMACVAPHGVLFR---GASEGKIRRYLVETKNYIDAIIGLP 383

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L  +K  +    V  I+A+  +  +    K +  +  +   +I++
Sbjct: 384 ANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKV----KTQNKLLPEHINKIVE 437

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y  R E  K+S              +  P  +    ++  +         + L      
Sbjct: 438 TYKRRAEIEKYSHKATIEEIAENDFNLNIPRYVDTFEEEEDIDIKAVMAEIKTLEAQRGE 497

Query: 514 FWLDILKPMMQ 524
               I   + +
Sbjct: 498 LDKQIDVYLKE 508


>gi|315652290|ref|ZP_07905282.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315485413|gb|EFU75803.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 525

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 120/556 (21%), Positives = 218/556 (39%), Gaps = 72/556 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRSA 54
            +   A L   IW  A+D+ G     DF + IL     R +   +         E   +A
Sbjct: 8   ESKQRAELHRKIWAIADDVRGAVDGWDFKQYILGNLFYRFISENITEFFNKAEHEAGDTA 67

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
                ++   ++ D           F   S+   + + +     NL + +A+        
Sbjct: 68  FDYAKISDEEADRDFRPGTVEDKGFFILPSQLFENVVANAGNNENLNTDLANIFNAIEGS 127

Query: 108 ------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                  +  K +F+D D +S       +EK   L  I K  + I+ +     D     +
Sbjct: 128 AIGFLSEEAIKGLFKDLDTTSDRLGATVVEKNKRLCDILKGIAEIDFNDFQSNDIDAFGD 187

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG+G
Sbjct: 188 AYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPTCGSG 239

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             +        +              GQE+      +    M +  +  +     + +I+
Sbjct: 240 SLILQMKKQFEEHIIEEG------FFGQEINMTNFNLARMNMFLHNVNYN-----NFSIK 288

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           +G TL   L   ++ F   +SNPP+  KW  D D      +     RF P   L   S  
Sbjct: 289 RGDTLLNPLHNDEKPFDAIVSNPPYSIKWVGDGDPTLINDE-----RFAPAGKLAPKSYA 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ I+ ++ LP
Sbjct: 344 DYAFIMHSLSYL----SSKGRAAIVCFPGIFYRKGA---EKTIRQYLVDNNFIDCVIQLP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + +++  KTE    KV  I+A+  +    N      ++ +     IL+
Sbjct: 397 ENLFFGTSIATCVLVMAKNKTE---NKVLFIDASKEFKKETN----NNVLEEKNIESILN 449

Query: 455 IYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSP 509
            +  R++ + F++ +D +          V   +      +   +  L  +I  T +K+  
Sbjct: 450 TFRERKDKEYFAKYVDKKYIEDNDYNLSVSTYVEKEDTREVIDIKVLNEEIAKTVKKIDE 509

Query: 510 LHQSFWLDILKPMMQQ 525
           L  +  + + +    +
Sbjct: 510 LRAAIDVIVKELEDGE 525


>gi|192362278|ref|YP_001984093.1| type I restriction-modification system specificity subunit
           [Cellvibrio japonicus Ueda107]
 gi|190688443|gb|ACE86121.1| type I restriction-modification system specificity subunit
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 202/541 (37%), Gaps = 64/541 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           TE       L   +WK A+ L  +    ++  V+L    L+ +  + E     +++    
Sbjct: 6   TEKPTKTEPLEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELHIKLKKGKGD 65

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAI 114
           + G++ + +   K A   F+   +   S L     +       +     I   + + K +
Sbjct: 66  YVGADPEDKDEYK-AENIFFVPRKARWSFLLGKAKQPDIGLHVDAAMDAIEKENPSLKGV 124

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173
                    +        L  +    S I L         V+ +++E+ +  F     + 
Sbjct: 125 LPKVYARQNL----DPTSLGGLIDLVSNIALGDAKARSADVLGHVFEYFLGEFALAEGKQ 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR +V L  A+L           P     ++DP CG+GG    +   V +   H
Sbjct: 181 GGQFYTPRSIVELLVAML----------EPYKG-RVFDPCCGSGGMFVQSEKFVEE---H 226

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + IR +++   +  ++      +   D     +  
Sbjct: 227 QGRVNDISIYGQESNQTTWRLAKMNLAIRGIDASQVKWNNEG-----SFLNDAHKDVKAD 281

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPN 351
           Y ++NPPF    W  +    +        GR+  G  P + + +  +L H    L     
Sbjct: 282 YIIANPPFNVSDWSGELLRTD--------GRWKYGPPPPLGNANFAWLQHFIYHL----A 329

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G+A +VL+   L      SGE EIR+ L+ E +LI+ IV LP  LF  T I   LW +
Sbjct: 330 PKGKAGVVLAKGAL--TSKTSGEGEIRKALIAEGNLIDCIVNLPAKLFLNTQIPAALWFM 387

Query: 411 S-------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +             R+ ++  I+A +L   I    ++ R ++ D   +I  +Y +   G+
Sbjct: 388 NRARGSSSKSSGHPRKSEILFIDARNLGHLI---NRRTRELSHDDINKIAGVYHNWRTGE 444

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDK---TGLARLEADITWRKLSPLHQSFWLDILK 520
                D + F    + + R   + ++L      GL   E D  + +     ++ +   LK
Sbjct: 445 GE-YEDVKGF-CASVSLERVAELDYVLTPGRYVGLPEEEDDFNFAERFAALKAEFEAQLK 502

Query: 521 P 521
            
Sbjct: 503 E 503


>gi|238019005|ref|ZP_04599431.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748]
 gi|237864489|gb|EEP65779.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748]
          Length = 531

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 216/568 (38%), Gaps = 69/568 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--------------TRSA 54
           A L   ++  A+ L G      +   +L     + L   L                T + 
Sbjct: 3   AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLESTVVKAYKSLDEYNTVAK 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRN--------NLESYI 104
             E Y ++   +   + F+        ++   +Y  S L +    N        N    +
Sbjct: 63  QTELYKSYILDDKSKDFFIATMSDTLGYHIEPQYLFSELANAVKDNSFELVHLKNAFVRL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            +     + +F+D D  S    ++   +   + ++ K    +++        V+ + YE+
Sbjct: 123 ETAYKQFEGLFDDIDLDSKQLGVDANQRNITISEVIKKLDEVDVLGH--DGDVIGDAYEY 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F +   + A +F TP+ V  +   ++    +           T+YDPT G+G  + 
Sbjct: 181 LIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQED------TPSFTVYDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   ++         P  +  HGQEL   T+ +    +++  + ++ +R     +  G T
Sbjct: 235 NVRKYL-------NNPDRVQYHGQELNVTTYNLARMNLILHEVSAEDQR-----LHNGDT 282

Query: 282 LSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYMFDSVVMNPPYSANWSADPTFMD----DARFNRYGK-LAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A++ +T  +N    +  +  +  ++I+D Y +R
Sbjct: 391 GTSIPTTVIILKKNRKGR---DVLFIDASNDFTKFKN----QNKLEPEHIKRIVDTYKNR 443

Query: 460 E-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E   K++ +  +         +  P  +    ++  +  +      + ++        DI
Sbjct: 444 ESIEKYAYLASFEEIKENDFNLNIPRYVDTFEEEAPIDMVTLGAEMKAINEEESKLEQDI 503

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
              ++Q        E         N  K
Sbjct: 504 YDMLLQLECAEEDREWLNGVLEVFNHEK 531


>gi|172039827|ref|YP_001799541.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171851131|emb|CAQ04107.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 528

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 104/531 (19%), Positives = 198/531 (37%), Gaps = 73/531 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
               + +WK A+ L G    + +  ++L    L+ +  A +  R  +  +    G +  +
Sbjct: 7   KEFEDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRLELLAELEEEGATAEE 66

Query: 69  LESFVKV-----AGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIF--E 116
           +   ++          F+   E     L     G T+        I    D A      +
Sbjct: 67  IAEELEDRDAYLEKNVFWVAKEARWDYLQRHSKGKTDDAGGEFKSIGKLIDEAAEALMTD 126

Query: 117 DFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSE 169
           +     T+     +       L ++   FS      +       ++  +YE+ + RF S 
Sbjct: 127 NLSLEGTLPHNYNSDSVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFASA 186

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TPR VV     +L   +             +YDP CG+GG    A   +  
Sbjct: 187 EGKRGGEFYTPRSVVRTLVEILEPTEG-----------RVYDPCCGSGGMFVQAEKFL-- 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +H K P  +  +GQEL   T  +    + I  L S          + G T ++D+  G
Sbjct: 234 -DAHDKDPSAIAIYGQELNERTWRLARMNLAIHALNSKG-----LGERWGDTFARDIHPG 287

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
               Y L+NPPF  K            +N +  R+  G+P   + +  ++ H+ +KL   
Sbjct: 288 VEMDYVLANPPFNIKDWV---------RNTDDKRWSYGVPPAKNANFGWMQHIISKLSAQ 338

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +V+++  +      SGE EIR+ +LE+D++  +V LP  LF  T I   +W 
Sbjct: 339 ----GEAGVVMANGTM--TSNTSGEGEIRKNMLEDDIVSCVVTLPAQLFRGTQIPVCVWF 392

Query: 410 LSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---- 459
            +  K        +RRG+  LI+A +L   +    +  R  +D+  ++I + + +     
Sbjct: 393 FAKDKGAGSKGFVDRRGEFLLIDARELGHMV---DRTERTFSDEDIQKIANTFRTWRGRS 449

Query: 460 -------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
                  +   + + +           +     + F  ++     ++  I 
Sbjct: 450 SAEGEYEDAPGYCKSVSLDEIREADYALTPGRYVGFAEEEEDGEPIDEKIA 500


>gi|297625332|ref|YP_003687095.1| Type I restriction-modification system DNA methylase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921097|emb|CBL55644.1| Type I restriction-modification system DNA methylase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 522

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/536 (22%), Positives = 206/536 (38%), Gaps = 71/536 (13%)

Query: 1   MTEFTGS--AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPT 51
           MTE T     A L   IW+ A DL G     DF   +L     R +   L       E  
Sbjct: 1   MTESTKESERAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYINKGEHA 60

Query: 52  RSAVREKYLAFGGSN--------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
              V   Y     S+        +D + F  +    F N    +        T  N  + 
Sbjct: 61  AGDVDFNYADLPDSDAAMALRETVDEKGFFILPSDLFENVRHDAPHNPNLNETLANAFAN 120

Query: 104 IA------SFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDR 153
           I       S   + K +F+D D +S       +++   L K+      + L +       
Sbjct: 121 IENSAAGTSSEGDLKGLFDDLDVNSNRLGNSVMQRNEKLVKLLDAVGDLPLGNFGEHTID 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L+  + S   +   +F TP++V  L T + +     + K        +YDP 
Sbjct: 181 LFGDAYEYLMTMYASSAGKSGGEFYTPQEVSELLTRITVVGKTHVNK--------VYDPA 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +   G            GQE+   T+ +C   M +  +         
Sbjct: 233 CGSGSLLLKFGQVLGQGGVRKG------YFGQEINLSTYNLCRINMFLHGINYS-----D 281

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+   W  + +            RF P   L  
Sbjct: 282 FDIALGDTLTEPKHWDEEPFEAIVSNPPYSIHWAGNDNPTLIND-----PRFSPAGVLAP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++ +
Sbjct: 337 KSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---ERKIRKYLIDNNFVDTV 389

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T I T + +L   K   R   V  ++ +  +    N+ K    ++D  R+
Sbjct: 390 IQLPPDLFFGTTIGTCIIVLKKSK---RDNSVLFVDGSAEFVRPGNKNK----LDDANRQ 442

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           +ILD + +RE+   F++++             V   ++     +K  +  L A I 
Sbjct: 443 KILDAFTAREDADYFAKLVPASELADNDYNLSVSSYVQPEDTTEKIDITELNARIA 498


>gi|312130090|ref|YP_003997430.1| type i restrictioN-modification system, m subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311906636|gb|ADQ17077.1| type I restriction-modification system, M subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 515

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 116/524 (22%), Positives = 198/524 (37%), Gaps = 65/524 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
               L + IWK A ++ G     DF   +L     R +         A      Y  F  
Sbjct: 6   QRQELQSKIWKIANEVRGSVDGWDFKHFVLGTLFYRFISENFTDYIEAGDTSINYAKFKD 65

Query: 65  SNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
           S+I  E     +K  GY  Y  S+  ++     +   NL + +                 
Sbjct: 66  SDIPEEVKVDAIKTKGYFIY-PSQLFVNVEAKADDNKNLNTDLKQIFTDIQNSANGYPSE 124

Query: 109 DNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIR 164
            + K +F+DFD +ST       EK   L  +    + +     +     +  + YE LI 
Sbjct: 125 HDIKGLFDDFDTTSTRLGNTVEEKNKRLSAVLHGIAELNFGSFEETKIDLFGDAYEFLIH 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP++V  L T + L     + K        +YDP  G+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQEVSRLLTRIALHKQTKVNK--------MYDPAVGSGALLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              GQE+   T+ +    M +  +  D       NI  G+TL+ 
Sbjct: 237 KLYDEHFVEEG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNIALGNTLTD 285

Query: 285 DLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F   K F   +SNPP+   W    D      +     RF P   L   S     F+MH
Sbjct: 286 PHFLDDKPFDAIVSNPPYSVNWIGSDDPTLINDE-----RFAPAGVLAPKSKADFAFVMH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+ T
Sbjct: 341 ALSYL----SGTGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IA  + +LS  K +    K Q I+A+    +   +     I+ +    +IL ++  +E 
Sbjct: 394 SIAVNILVLSKHKADT---KTQFIDAS--GEAFFKKVTNNNILEEKHIAEILHLFDRKET 448

Query: 462 -GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
               +  +D +          V   +      +   +  L  ++
Sbjct: 449 VDHVAVTVDNKQIAENDYNLSVSSYVEAKDTREVINIETLNQEL 492


>gi|212703156|ref|ZP_03311284.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098]
 gi|212673422|gb|EEB33905.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098]
          Length = 517

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 198/556 (35%), Gaps = 60/556 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +       L   +W  A+ L  +    ++  V+L    L+ +  A E   + +      +
Sbjct: 5   KKEKPQEPLEKQLWSAADKLRKNIDAAEYKHVVLGLIFLKYISDAFEALHATLTAGEGEY 64

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
            G++ + +    +A   F+       S L     +       +     I   +     + 
Sbjct: 65  EGADPE-DRDEYLAQNIFFVPVSARWSHLRDHAKQPDIGVLLDKAMEAIEQENSELAGVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   +        L  +    S I           V+ +++E+ +  F     +  
Sbjct: 124 PKVYARPNL----DPANLGGLIDLVSNIAFGDTPEQSADVLGHVFEYFLGEFALAEGKKG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR +V L  A+L                 + DP CG+GG    +   V +   H 
Sbjct: 180 GQFYTPRSIVELLVAMLEPFRG-----------RVMDPCCGSGGMFVQSEQFVRE---HQ 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +   L  +GQE    T  +    + IR ++S      ++      +   D     R  Y
Sbjct: 226 GMLEDLSLYGQESNQTTWRLAKMNLAIRAIDSSQVLWNNEG-----SFLHDAHPDVRVEY 280

Query: 295 CLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPPF    W  D    +         R+  G+P   + +  ++ H  + L    +  
Sbjct: 281 ILANPPFNDSDWSGDLLQND--------ARWQYGVPPAGNANFAWMQHFIHHL----SPR 328

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL-- 410
           G+A +VL+   L      +GE +IRR ++E  +L++ IV LP  LF  T I   LW L  
Sbjct: 329 GQAGVVLAKGSL--TSKTNGEGDIRRRMIEEGNLVDCIVNLPAKLFLNTQIPACLWFLAR 386

Query: 411 --SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
              N    +R G++  I+A ++   I    ++ RI+  +    I + Y +  N   +   
Sbjct: 387 DRKNGPFRDRSGEILFIDARNMGQLI---NRRTRILTAEDIATISNAYHNWRNPDGA-YE 442

Query: 469 DYRTFGYRRIKVLRPLRMSFILDK---TGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           D + F    + + R   + ++L      GL   E D  + +     +      L+   + 
Sbjct: 443 DVKGF-CAAVPLSRVAELDYVLTPGRYVGLPDEEDDFDFAERFASLKQELAAQLEEEQRL 501

Query: 526 IYPYGWAESFVKESIK 541
                 A S V+   +
Sbjct: 502 NAAIAEALSSVEFLKE 517


>gi|327467251|gb|EGF12755.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK330]
          Length = 533

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/570 (21%), Positives = 216/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   L    +   E+    
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVAETMEEETES 61

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLE 101
                     Y     S  DL S +K         +    + +   N             
Sbjct: 62  LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPALTFTALVDRVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++  L+  + K  + +++        ++ + 
Sbjct: 122 RDIEQCDELYENLFEDIDLYSKKLGATPQKQNQLVAAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------EQGFTLYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +   GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW      +  + +    G+  P     S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFL-HDPRFSPFGKLAP----QSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL  Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILKAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE+  KF+ +  Y         +  P  +    ++      E        +   +S  
Sbjct: 444 KSREDMEKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAIESQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
           + +L+ + Q       A++ +K+ +K  + 
Sbjct: 504 VSLLEMLNQLHGTTPEADAELKQFLKEFKG 533


>gi|307710636|ref|ZP_07647069.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK564]
 gi|307618579|gb|EFN97722.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK564]
          Length = 533

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 120/570 (21%), Positives = 215/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   +    +   E+    
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61

Query: 59  -------YLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNL--------E 101
                  Y  +       E  + V     ++    E + + L                  
Sbjct: 62  LESALEVYRNYYEDAETHEDLLAVMKDELNYSIKPELTFTALVERVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++   +  + K  + +++        ++ + 
Sbjct: 122 RDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +        +  T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QLGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW         + +    G+  P     S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASS-GFMADPRFSPFGKLAP----QSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +ILD Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILDAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF+ +  Y         +  P  +    ++      +        +   Q+  
Sbjct: 444 KSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINTTNQAIQNQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +LK + Q       A++ +K+ +K  E 
Sbjct: 504 ASLLKMLNQLHGTTPEADAELKKFLKEFEG 533


>gi|258513099|ref|YP_003189355.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635002|dbj|BAI00976.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638057|dbj|BAI04024.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641111|dbj|BAI07071.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644166|dbj|BAI10119.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647221|dbj|BAI13167.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650274|dbj|BAI16213.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653265|dbj|BAI19197.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656318|dbj|BAI22243.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 537

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 177/466 (37%), Gaps = 58/466 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               ++  A+ L  + + +D+  V L    LR +  A E   + +    L    +  D +
Sbjct: 34  FEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM---LEDPEAAEDPD 90

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            ++  A   F+       S L       N+   I    D A    E  +       L K 
Sbjct: 91  EYL--AENIFWVPETARWSHLKDNARSANIGKMI----DEAMLAIEKANPEQLKGVLPKD 144

Query: 131 G--------LLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                    +L ++    S I +   D     V+  +YE+ +  F     +   +F TP 
Sbjct: 145 YGRPALDTVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPS 204

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV    ++L           P     +YDP CG+GG    +   V   G        + 
Sbjct: 205 SVVRTLVSML----------EPYKG-RVYDPCCGSGGMFVQSERFVETHGGKLG---DIA 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE    T  +    + +R + +D R +         +  +D     RF Y L+NPPF
Sbjct: 251 IYGQESNHTTWRLARMNLAVRGIGADIRWNNEG------SFLRDELKDLRFDYILANPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                             E  R+  G P   + +  +L H+   L       G A +VL+
Sbjct: 305 NVSDW-------WNASLEEDPRWQYGKPPAGNANYAWLQHILWHL----APDGTAGVVLA 353

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EE 417
           +  + + +    E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K      +
Sbjct: 354 NGSMSSNQNS--EGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKNPKGWRD 411

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           RRG++  I+A  L   +    + RR + D+   +I D Y +    K
Sbjct: 412 RRGEILFIDARKLGKLV---DRTRRELTDEDVARIADTYHAWRGEK 454


>gi|329113898|ref|ZP_08242666.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
 gi|326696764|gb|EGE48437.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
          Length = 537

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 177/466 (37%), Gaps = 58/466 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
               ++  A+ L  + + +D+  V L    LR +  A E   + +    L    +  D +
Sbjct: 34  FEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM---LEDPEAAEDPD 90

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            ++  A   F+       S L       N+   I    D A    E  +       L K 
Sbjct: 91  EYL--AENIFWVPETARWSHLKDNARSANIGKMI----DEAMLAIEKANPEQLKGVLPKD 144

Query: 131 G--------LLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                    +L ++    S I +   D     V+  +YE+ +  F     +   +F TP 
Sbjct: 145 YGRPALDTVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPS 204

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV    ++L           P     +YDP CG+GG    +   V   G        + 
Sbjct: 205 SVVRTLVSML----------EPYKG-RVYDPCCGSGGMFVQSERFVETHGGKLG---DIA 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE    T  +    + +R + +D R +         +  +D     RF Y L+NPPF
Sbjct: 251 IYGQESNHTTWRLARMNLAVRGIGADIRWNNEG------SFLRDELKDLRFDYILANPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                             E  R+  G P   + +  +L H+   L       G A +VL+
Sbjct: 305 NVSDW-------WNASLEEDPRWQYGKPPAGNANYAWLQHILWHL----APDGTAGVVLA 353

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EE 417
           +  + + +    E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K      +
Sbjct: 354 NGSMSSNQNS--EGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKNPKGWRD 411

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           RRG++  I+A  L   +    + RR + D+   +I D Y +    K
Sbjct: 412 RRGEILFIDARKLGKLV---DRTRRELTDEDVARIADTYHAWRGEK 454


>gi|227539167|ref|ZP_03969216.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240849|gb|EEI90864.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 513

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 200/558 (35%), Gaps = 73/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT        L   +W+ A+ L  +    ++  V+L    L+ +  A +     ++    
Sbjct: 1   MTNT----LQLEKTLWQAADKLRNNMDAAEYKHVVLGLIFLKYISDAFDEHYEHLKSIED 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
             G    D + +   A   FY         L             ++    I   + + K 
Sbjct: 57  QTGADPEDKDEY--TADKIFYVPPSARWKWLQGRAKLPTIGKDIDDAMDAIEKDNPSLKG 114

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVS 171
           +         + +      L ++      I L  +       V+  ++E+ + +F     
Sbjct: 115 VLPKDYARPALDK----QRLGELIDLIGSITLSKNGSGKGKDVLGFVFEYFLGQFADAEG 170

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ +V+L   +L          +P   + +YD  CG+GG    +   +    
Sbjct: 171 KKGGQFYTPQSIVNLLVEIL----------APEAEKRVYDGACGSGGMFVQSERFIE--- 217

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            H      +   GQE  P T+ +    + IR +++          + G TL  D F   +
Sbjct: 218 IHEHRKGKISIFGQESNPTTYKLAKMNLAIRGIDAKI--------ELGDTLMNDKFPELK 269

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF           +      E  ++  G+P   + +  +L H  +KL     
Sbjct: 270 VDYVIANPPFNVS--------DYNINKAETHKWKYGIPPTGNANYAWLQHFVSKLAPY-- 319

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A IVL++  + +  A   E +IR+ ++E DL++ +VALP+ LF+ T I   LW L+
Sbjct: 320 --GTAGIVLANGSMSSEIAT--EGQIRKEMIEADLVDCMVALPSQLFYNTQIPACLWFLA 375

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--- 463
             K        R  ++  I+A +L T I    +K+R + D    ++   Y +  + +   
Sbjct: 376 RNKEGNSKLRNRNHEILFIDARELGTMI---SRKQRELTDTDIARVAATYHNWRSPEKFA 432

Query: 464 --------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                   F +  + +        +     + F   +      E  +     +   Q   
Sbjct: 433 TDYKDIPGFCKSANIQDVRKNNYILTPGRYIDFKAVEDDGVAFEEKMKTLTSTLAEQMHK 492

Query: 516 LDILKPMMQQIYPYGWAE 533
            + L  +++        E
Sbjct: 493 ANELDKLIKTNLAKIGFE 510


>gi|268596452|ref|ZP_06130619.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|268603244|ref|ZP_06137411.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID1]
 gi|268681724|ref|ZP_06148586.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID332]
 gi|268550240|gb|EEZ45259.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|268587375|gb|EEZ52051.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID1]
 gi|268622008|gb|EEZ54408.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID332]
          Length = 514

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYCGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 492


>gi|240013720|ref|ZP_04720633.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI18]
 gi|240080302|ref|ZP_04724845.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|240117541|ref|ZP_04731603.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID1]
 gi|240120790|ref|ZP_04733752.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID24-1]
 gi|240123095|ref|ZP_04736051.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID332]
          Length = 513

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 119 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYCGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 388 NLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 491


>gi|52079176|ref|YP_077967.1| Type I restriction modification system protein HsdMI [Bacillus
           licheniformis ATCC 14580]
 gi|52784543|ref|YP_090372.1| hypothetical protein BLi00744 [Bacillus licheniformis ATCC 14580]
 gi|52002387|gb|AAU22329.1| Type I restriction modification system protein HsdMI [Bacillus
           licheniformis ATCC 14580]
 gi|52347045|gb|AAU39679.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 530

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 216/556 (38%), Gaps = 68/556 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------- 55
           A L + ++  A++L      +++   +L     + L   L      +             
Sbjct: 2   AELHSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIAGESLEEYNTQDK 61

Query: 56  -----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                 E        N  +E+ V   GY       +S+    +       N  N     +
Sbjct: 62  QTQLYMESLADEEIKNDLIETLVDTLGYDIEPKYLFSVLANQAKQNTFHLNDLNKAFIDL 121

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           ++  D    +F+D D  S     +       I +    + +++       V+ + YE+LI
Sbjct: 122 STKYDQFNGLFDDVDLKSKKLGSDDPQRNITITEVLKKLNDVNVIEHNGDVIGDAYEYLI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP  V  +   +     +         + +++DPT G+G  + + 
Sbjct: 182 SQFASEAGKKAGEFYTPHQVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNI 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N++         P  +  HGQEL   T  +    +++  +  +  R     ++ G TL+
Sbjct: 236 RNYI-------NYPDSVKYHGQELNTTTFNLAKMNLILHGVNKEDMR-----LRNGDTLN 283

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL+H
Sbjct: 284 KDWPTDEPYTFDAVLMNPPYSAKWSADTTFID----DSRFNRYGK-LAPKSKADFAFLLH 338

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF T
Sbjct: 339 GFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGT 391

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + IL   ++      V  I+A+  +   +N    +  ++ +   +I++ Y  RE+
Sbjct: 392 SIPTTVIILKKNRSTR---DVLFIDASKEFIKGKN----QNKLSKENIDKIVETYKKRED 444

Query: 462 -GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-QSFWLD 517
             K++ +  +         + + R +      +   +A + + I   ++     +S   D
Sbjct: 445 VEKYAHVATFEEIKENDFNLNIPRYVDTFEEEEPIDMAAIGSKIKDIRIEKAELESSLYD 504

Query: 518 ILKPMMQQIYPYGWAE 533
           ++  +        W +
Sbjct: 505 MISSLQYDEENADWIK 520


>gi|282881750|ref|ZP_06290411.1| putatIve type i restriction enzyme hindviip m protein
           [Peptoniphilus lacrimalis 315-B]
 gi|281298400|gb|EFA90835.1| putatIve type i restriction enzyme hindviip m protein
           [Peptoniphilus lacrimalis 315-B]
          Length = 510

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 106/533 (19%), Positives = 194/533 (36%), Gaps = 69/533 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + +   
Sbjct: 1   MAGKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLK--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +         F+   E   S + S           ++    I   + + K 
Sbjct: 58  --DGDGFENDRDAYAEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENTSLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F +    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    A+L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSD 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++      +       T   D+    + 
Sbjct: 222 NRGN---ISVYGQESNADTWKMAKMNMAIRGIDA------NFGSYHADTFFNDIHKTLKS 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGA-------DKLKDDVRWKYGTPPSGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +  +G  E EIRR ++E+DLIE IVALPT LF+   I   LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQSSG--EGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGK- 463
            K  +++GK   I+A  +   +    +K R   +             +   +   +NG+ 
Sbjct: 380 NK--KQKGKTLFIDARKMGYMV---DRKHRDFTEGIQADGSLGDIDLLAKTFEDFQNGEL 434

Query: 464 -----FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                FS +        +   +L P R   I ++        +   R  S L 
Sbjct: 435 KEKKGFSAIASIEDIAKQDY-ILTPGRYVGIEEQEDDGEPFEEKMTRLTSELS 486


>gi|218263900|ref|ZP_03477848.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222411|gb|EEC95061.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii
           DSM 18315]
          Length = 510

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 201/518 (38%), Gaps = 58/518 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN----------AKAIF 115
            ++        G  + +  E + +    +N        I   +             + IF
Sbjct: 76  QVEDLPIRIPDGAHWRDVREVTENV---SNKLVEAFIAIEQANPAKEMDGRKIGGLEGIF 132

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
              D  +  A++  + +   + ++FS   L     P   M   YE+L+ +F  +    A+
Sbjct: 133 GPKDGWTNKAKMPDSIITS-LIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQ 191

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G    
Sbjct: 192 EFYTNRTVVQLMAEIL----------QPKPNESIYDPTCGSGGMLVKCLDYLRNKGEEW- 240

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
               +   GQE+   T ++    + +  +E         +I    TL    F      ++
Sbjct: 241 --QSVQVFGQEVNGLTSSIARMNLYLNGVED-------FSIVCADTLEHPAFLDGSHLRK 291

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPP+  K    +        N + GR   G P        FL H+   +     
Sbjct: 292 FDIVLANPPYSIKEWNREK-----FMNDKWGRNFLGTPPQGRADYAFLQHIIASM---NE 343

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR AI+     LF       E E+R+ L+E D+++ I+ L  +LF+ + +   + I +
Sbjct: 344 TQGRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACILICN 399

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDY 470
             K   ++ +V +INA +  T    E      +  +  ++I++ Y  +RE   FSR++  
Sbjct: 400 CSKANSKKNRVLMINAVNEVTRKNAESM----LLAEHIQRIVNAYQQNRELDGFSRIVSN 455

Query: 471 RTFGYRR--IKVLRPLRMSFILDKTGLARLEADITWRK 506
                ++  + +      S + D   +++ +A   W  
Sbjct: 456 DEIREKKFNLNISLYAYQSVLQDALTVSKEDAINVWIS 493


>gi|313904109|ref|ZP_07837489.1| type I restriction-modification system, M subunit [Eubacterium
           cellulosolvens 6]
 gi|313471258|gb|EFR66580.1| type I restriction-modification system, M subunit [Eubacterium
           cellulosolvens 6]
          Length = 531

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 114/568 (20%), Positives = 217/568 (38%), Gaps = 69/568 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51
           M E       L N +W  A+ L G     ++   +L     + L  +          + T
Sbjct: 1   MAEK----KDLLNVLWSGADVLRGKMDANEYKTYLLGLVFFKYLSDSYLAKVYDLLNDTT 56

Query: 52  RSAVREKYLAFGG--SNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNL------- 100
             ++ E    +     + D E  +     S + T     +  ++ +    N         
Sbjct: 57  PDSLDEAQSQYEEIMKSEDAEDLLAELRDSMHYTLEPNMTYQSILNDAKNNAFNREKLQA 116

Query: 101 -ESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             + I    +    +F D D  S        +++  + ++ K   G +L        V+ 
Sbjct: 117 AFNRIQESDEIFNGLFSDVDLYSNRLGTGDQKQSDTIAEVIKVLDGADLI--HTSGDVLG 174

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP     +   + +   +            +YDP  G+
Sbjct: 175 NAYEYLIGQFASETGKKAGEFYTPHGPAQILCRIAMTGQEN------KKGLQVYDPCMGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  +    N+  +       P  +  +GQEL P T+ +    M +  +  +     ++++
Sbjct: 229 GSLMLSCKNYSTE-------PDFIKYYGQELMPSTYNLARMNMFLHGILPE-----NQHL 276

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  T +   F     NPP+  KW     A E   ++     +G  L   S  
Sbjct: 277 RNGDTLDADWPTDEETEFDVVTMNPPYSAKWS----AAEGFKQDERFMDYGGKLAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLEN  I A++ LP
Sbjct: 333 DYAFLLHGFYHLKPS----GTMAIVLPHGVLFRGAA---EGTIRQTLLENGSIYAVIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + +L   +       V  I+A++L+       KK+ ++ ++   ++L+
Sbjct: 386 SNMFYNTSIPTCIIVLKKHREGR---DVLFIDASNLYEK----DKKQNVMKEEHISKVLE 438

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +Y +R +  K + +  Y         +  P  +    ++  +      +     +   + 
Sbjct: 439 LYKNRASVDKQAYLASYEDIKANDFNLNIPRYVDTSEEEEEIDLKALTVEMNDTNKAIKE 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIK 541
               +L+   +  +     E  +KE +K
Sbjct: 499 SDAQLLQMFSELTFDSPEMEQAMKEFMK 526


>gi|312863190|ref|ZP_07723428.1| type I restriction-modification system, M subunit [Streptococcus
           vestibularis F0396]
 gi|311100726|gb|EFQ58931.1| type I restriction-modification system, M subunit [Streptococcus
           vestibularis F0396]
          Length = 534

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 216/572 (37%), Gaps = 65/572 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            +       Y  +       E  + V      Y+ +    ++       +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLSVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++       FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +        ++ +
Sbjct: 233 GSLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG  L   S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGK-LAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +ILD
Sbjct: 390 ANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILD 442

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y SRE+  KF+ +  +         +  P  +    ++      E      + +   +S
Sbjct: 443 AYKSREDMDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVTKINQTNATIES 502

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
               +L  + Q       A+  +K  +++ + 
Sbjct: 503 QTASLLDMLGQLHGTTPEADEELKAFVEAFKG 534


>gi|307704331|ref|ZP_07641248.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK597]
 gi|307622091|gb|EFO01111.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK597]
          Length = 533

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 118/570 (20%), Positives = 216/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNL--------E 101
             A  E Y  +       E  + V     ++    E + + L +                
Sbjct: 62  LEAALEVYRNYYEDADTHEDLLAVMKDELNYSIKPELTFTALVARVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++   +  + K  + +++        ++ + 
Sbjct: 122 RDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +        +  T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTRIAFLGRED------QLGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW         + +    G+  P     S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASS-GFMADPRFSPFGKLAP----QSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILEAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF+ +  Y         +  P  +    ++      +        +   Q+  
Sbjct: 444 KSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINTTNQAIQNQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +L+ + Q       A++ +K+ ++  E 
Sbjct: 504 ASLLEMLGQLHGTTPEADAELKKFLQEFEG 533


>gi|294790580|ref|ZP_06755738.1| type I restriction-modification system, M subunit [Scardovia
           inopinata F0304]
 gi|294458477|gb|EFG26830.1| type I restriction-modification system, M subunit [Scardovia
           inopinata F0304]
          Length = 566

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 117/550 (21%), Positives = 208/550 (37%), Gaps = 77/550 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E    A +L++ +W  A DL G    ++F   IL F   R L    E    +     +  
Sbjct: 12  EKNNQAGNLSSQLWAMANDLRGKMDASEFRDYILGFIFYRYLSDRQEHYLESSGTVDIEE 71

Query: 63  GGSNIDL--------------ESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIA 105
           G S  D               E      GY+      +        N R    + ++   
Sbjct: 72  GESLNDAYTRCSKREGIELYREDLSNELGYAIDPADTWQSLLDKIQNQRIRPEDFQNIFD 131

Query: 106 SF----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152
            F            + + +F+D + S++    +   +A  L  I +  + ++   D    
Sbjct: 132 HFKRNALLNPNSEKDFRDVFDDINLSNSSLGTSTAARAKALAAIVEKINEVDF-LDEGGR 190

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----- 207
            ++ ++YE+LI +F     + A +F TP +V  +   L+         ES  +I      
Sbjct: 191 DILGDVYEYLIEKFAGSSGKKAGEFYTPHEVSKVLAKLVTYAAPDASDESKDVINNEDST 250

Query: 208 -TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            T+YDPT G+G  L      +       ++      +GQEL   T  +    +L+  +  
Sbjct: 251 FTIYDPTMGSGSLLLTVQKELTGLDHRSRV----HFYGQELNRTTFNLARMNLLMHGVGY 306

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHK 317
                 S  ++   TL  D   G           F   ++NPP+ +KW+ +   + K+ +
Sbjct: 307 Q-----SMFLRNADTLESDWPDGVDAQGINHPLFFDAVVANPPYSQKWDNNATKM-KDPR 360

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             E G+  P     S     F+ H    ++L     GR AIVL    LF G A   E  I
Sbjct: 361 FKEYGKLAP----KSAADFAFVEHCLYHMKL----TGRMAIVLPHGVLFRGGA---EGII 409

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLE + ++A++ LP++LF+ T IAT + +    KT      V  I+A+  +   +N 
Sbjct: 410 RKALLEKNYLDAVIGLPSNLFYSTGIATVVLVFRKDKT---TDNVLFIDASQHFEKRKN- 465

Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTG 494
              +  + D+    I   Y  R++  K + +       +    + + R +      +   
Sbjct: 466 ---QNTLRDEDINLIFQTYKDRKDVDKLAHVASRDEIIHNEYNLNIPRYVDTFEEEEPID 522

Query: 495 LARLEADITW 504
           L  +   I  
Sbjct: 523 LNEVNQQIAD 532


>gi|260589481|ref|ZP_05855394.1| type I restriction-modification system, M subunit [Blautia hansenii
           DSM 20583]
 gi|260540049|gb|EEX20618.1| type I restriction-modification system, M subunit [Blautia hansenii
           DSM 20583]
          Length = 522

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 123/560 (21%), Positives = 208/560 (37%), Gaps = 73/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSA 54
           T+       L   IW  A++L G     DF   +L     R +   +       E     
Sbjct: 4   TKKEQEREELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITAYINSGEIEAGN 63

Query: 55  VREKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
           +   Y        +   E  V+  G+ F   SE   +     +   NL   +        
Sbjct: 64  IDFDYAKMIDEEAEEAREGLVQEKGF-FILPSELFCNVRARASLDENLNETLEQVFCHIE 122

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRV---M 155
                    ++   +F+DFD +S       A    ++ K   G+  ++  +V D      
Sbjct: 123 ESAQGSQSENSFAGLFDDFDVNSNKLGSTVAKRNERLVKLLDGVAAMNLGSVKDHDIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP DV  L T L               I  +YDP CG
Sbjct: 183 GDAYEYLMTMYASNAGKSGGEFFTPADVSVLLTKL--------GTVGKTTINKVYDPACG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A   +               +GQE+   T+ +C   M +  +  D       +
Sbjct: 235 SGSLLLKAEKLLGKEAVTSG------FYGQEINITTYNLCRINMFLHDIGFDK-----FD 283

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I+   TL+       + F   +SNPP+  KW  D + +          RF P   L   S
Sbjct: 284 IECEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDDNPLLIND-----PRFAPAGVLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              M F+MH  + L       G AAIV     ++ G A   E +IR+++++N+ I+ I+ 
Sbjct: 339 KADMAFIMHSLSWL----APNGTAAIVCFPGIMYRGGA---EKKIRQYMVDNNYIDCIIQ 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + ++   K +     +  I+AT+    + N       + DD    I
Sbjct: 392 LPNNLFFGTSIATCIMVMKKGKKD---NNILFIDATNECIKVTN----NNKLTDDNIENI 444

Query: 453 LDIYVS-RENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +  +V  RE      +  Y           V   +  + I  K  +A+L ++I    +  
Sbjct: 445 IKWFVERREIEHTVHLATYDEVSQNDYNLSVSTYIEAADIRKKIDIAKLNSEIVD--IVS 502

Query: 510 LHQSFWLDILKPMMQQIYPY 529
             Q    +I + + +    Y
Sbjct: 503 REQVLRDEIDRIIAEIEGGY 522


>gi|116627584|ref|YP_820203.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMD-9]
 gi|116100861|gb|ABJ66007.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMD-9]
          Length = 534

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 122/562 (21%), Positives = 211/562 (37%), Gaps = 67/562 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 49  ---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E   +  R+ Y         L        Y+ +    ++       +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++       FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +        ++ +
Sbjct: 233 GSLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG  L   S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGK-LAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+
Sbjct: 390 ANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            Y SRE+  KF+ +  +         + + R +      +   L  + A I     +   
Sbjct: 443 AYKSREDMDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIES 502

Query: 512 QSFWLDILKPMMQQIYPYGWAE 533
           Q+  L  +   +    P    E
Sbjct: 503 QTASLLDMLGQLHGTTPEADKE 524


>gi|313668698|ref|YP_004048982.1| type I restriction-modification system protein [Neisseria lactamica
           ST-640]
 gi|313006160|emb|CBN87622.1| putative type I restriction-modification system protein (ec
           2.1.1.72) [Neisseria lactamica 020-06]
          Length = 514

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 115/533 (21%), Positives = 201/533 (37%), Gaps = 74/533 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       + F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G     E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGT---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  + +     +         +  GY  + V   +      +   + +L A+I
Sbjct: 442 FADKAD--VPHIAQNAAQQTIKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEI 491


>gi|291044252|ref|ZP_06569961.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
 gi|291011146|gb|EFE03142.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
 gi|317163870|gb|ADV07411.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 514

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 492


>gi|227533895|ref|ZP_03963944.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188457|gb|EEI68524.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 532

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 215/562 (38%), Gaps = 70/562 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M + T  + +L   +W +A+ L      +++   +L     + L   +    S   E+  
Sbjct: 1   MAQMT--SQTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 60  -----------LAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                       A+   ++  +    V+   GY       ++       +    LE    
Sbjct: 59  TDLDKAQQIYTDAYDDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQLEDLSQ 118

Query: 106 SFSDNAK------AIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           SF D  +       +FED D  S        ++  ++  + K  S ++L      + ++ 
Sbjct: 119 SFRDIEQSSEFFSGLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQN-TNDILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F S+  + A +F TP+ V  L T + +   + +         T+YDPT G+
Sbjct: 178 DAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDPTMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +  +  S       +   GQEL   T+ +    M++  +        ++++
Sbjct: 232 GSLLLNARRYSNERLS-------INYFGQELNTSTYNLARMNMILHGV-----PINNQHL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISD 333
               TL +D    +   F   + NPP+   W   K             RF   GL   S 
Sbjct: 280 HNADTLDQDWPIEEPTNFDAVVMNPPYSAHWRPSKGTEND-------PRFVSYGLAPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G   IVL    LF G A   E  IR+ LLEN  I+ ++ L
Sbjct: 333 ADFAFLLHGYYHLK----DTGVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVIGL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + +L   +T      V  I+A+  +   +N    +  +  D  ++IL
Sbjct: 386 PANIFFNTSIPTTVTVLKKSRTTR---DVLFIDASKEFEKAKN----QNHLTGDNIQKIL 438

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           + Y++R++  K++ +  +         +  P  +     +  +  ++     +K      
Sbjct: 439 ETYINRKDVDKYAHLASFDEIKENDFNLNIPRYVDTTEPEKPVDVVKVVADIKKNDEEIA 498

Query: 513 SFWLDILKPMMQQIYPYGWAES 534
               ++ K     +     A  
Sbjct: 499 RLSSELAKNFDDLVANNDEAAK 520


>gi|158520268|ref|YP_001528138.1| type I restriction-modification system, M subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509094|gb|ABW66061.1| type I restriction-modification system, M subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 808

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 117/634 (18%), Positives = 237/634 (37%), Gaps = 70/634 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +      +        +  G S 
Sbjct: 4   KKSELYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISDKYAASDDYAPPVTIPRGASF 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA- 125
            D+      +              +G       ++  I S S  A++ F DF+  + +  
Sbjct: 64  QDMVKLKGKSD-------------IGDKINTQIIQPLIDSNSRLARSDFPDFNDPNKLGE 110

Query: 126 RLEKAGLLYKICKNFS--GIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                  L  +   F    ++   +    D ++ + YE+L+R F  E  +    F TP +
Sbjct: 111 GKAMVDRLTNLISIFQKPELDFSKNRADHDDILGDAYEYLMRHFAQESGKSKGQFYTPSE 170

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  +   ++      +  +      T YDPTCG+G  L       A+ G H      +  
Sbjct: 171 VSRIIAKVI-----GISPQKAVASTTAYDPTCGSGSLLLKVA---AEAGKH------ITL 216

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE +  T  +    M++      P  ++       S   KD    + + + ++NPPF 
Sbjct: 217 EGQEKDVTTAGLARMNMILHDF---PTANILNGNTLASPKFKDGEKLRTYDFVVANPPFS 273

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K        E    N    RF  G+P    G   +L+H+   ++      G+AA +L  
Sbjct: 274 DKTWSTGLTSE----NDPYQRFEWGVPPAKQGDYAYLLHIIRSMK----STGKAACILPH 325

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E+ IR+ L+ +  ++ I+ LP +LF+ T I   + +L       R+G +
Sbjct: 326 GVLFRGNA---ENVIRKRLVRSGYLKGIIGLPANLFYGTGIPACILVLDKENATARKG-I 381

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG----YRR 477
            +I+A+  +    N+ +    + +    +I+D +  + E  +++RM+ +           
Sbjct: 382 FMIDASRGFIKDGNKNR----LREQDIHKIVDTFRKQAETPRYARMVPFDEIADSKNDYN 437

Query: 478 IKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWL--DILKPMMQQIYPYGWAES 534
           + + R +  +   D   +   L   I  R +  L   + +   +   + + + P     +
Sbjct: 438 LNLPRYIDGTEPEDIQDIDGHLRGGIPDRDIDALSDYWAILPTVRAALFKPLRPGYAQLA 497

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG------EWIPDTNLT 588
                +K       +  A K  +    + + + +  A    D  G      E I +  LT
Sbjct: 498 IPHSQLKQAILGHDEFTAFKKTVTKIFDKWQKANTPALKGFDKKGHPRALIEAIAEHLLT 557

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
            +   P L++   Y       H+ D + + +  D
Sbjct: 558 AFRGAPLLDAYDVYQ------HLMDYWAEAMQDD 585


>gi|240016160|ref|ZP_04722700.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA6140]
 gi|260440928|ref|ZP_05794744.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
          Length = 513

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 119 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 179 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 279

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 335 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 388 NLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 440

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 441 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 491


>gi|315222636|ref|ZP_07864525.1| putative type I restriction-modification system, M subunit
           [Streptococcus anginosus F0211]
 gi|315188322|gb|EFU22048.1| putative type I restriction-modification system, M subunit
           [Streptococcus anginosus F0211]
          Length = 496

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 113/526 (21%), Positives = 203/526 (38%), Gaps = 47/526 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L  ++W +A  L        + + I P    +RL    +     VR ++       
Sbjct: 6   TIDELEKYLWGSAVLLRTHVDAGAYKQYIFPLLFFKRLSDVYDEECEKVRAEFGEEALDW 65

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +   F    G  + +    S     +           A+  +    IF D  +++   R
Sbjct: 66  EENHQFQIPDGAHWNDVRNVSQDVGKA--IIEAFHKIEAANPEKLHGIFGDASWTNK-NR 122

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  + ++FS   L     P   +   YE+LI++F  +    A++F T R VV+L
Sbjct: 123 LPD-RLLKDMLEHFSTKTLSIANCPADELGQGYEYLIKQFADDSGHTAQEFYTNRTVVNL 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDPTCG+ G L  A+ ++   G   +    L  +GQE
Sbjct: 182 MIEML----------KPQPSESIYDPTCGSAGMLISAVAYLKQQGLEWRN---LSIYGQE 228

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG 302
           +   T A+    +L+  ++         NI    TL    FT     ++F   L+NPP+ 
Sbjct: 229 IVTLTSAIARMNLLLHGVQD-------FNIVNADTLKTPAFTDHAKLQQFDLILANPPYS 281

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                D+ A E    + + GR   G P        F  H+   L+      GR AI+   
Sbjct: 282 ISQW-DRTAFE----SDKYGRNFLGTPPQGRADYAFFQHILKSLD---EKTGRCAILFPH 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E ++R  L+++DL+E ++ L  +LF+ + +   + I   RK   R G+V
Sbjct: 334 GVLFRNE----EKDMREKLVKSDLVECVIGLGPNLFYNSPMEACIIICRTRKAVNREGQV 389

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481
             INA +  T        +  + D    +I   Y   E +G  ++++  +        + 
Sbjct: 390 LFINALNEVTR----KNAQSYLEDKHIEKIAKAYDKYESDGDIAKVVTIKDIAKNDYSLS 445

Query: 482 RPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILKPMMQQ 525
            PL +    ++    R   +    W++ + +    +  I K +   
Sbjct: 446 IPLYIQTSSEEQEDDRTIQECYSDWKEAAEMASRHFESINKMIGGD 491


>gi|225871247|ref|YP_002747194.1| type I restriction-modification system M protein [Streptococcus
           equi subsp. equi 4047]
 gi|225700651|emb|CAW95219.1| type I restriction-modification system M protein [Streptococcus
           equi subsp. equi 4047]
          Length = 514

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 110/529 (20%), Positives = 201/529 (37%), Gaps = 62/529 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L   IW  A+D+ G     DF + IL     R +    +       +   
Sbjct: 1   MSEQ-AQRQELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENFKTYIEGGEDFNY 59

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-------- 109
           + +       +++         F   ++   + + +  + +NL + +    D        
Sbjct: 60  EEIPDEVITPEVKDDAIKTKGYFIMPAQLFSNVVKTARSNDNLNTELKDIFDAIEASAMG 119

Query: 110 -----NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
                + K +F+D D  S        E+   L  I +  + ++    +     +  + YE
Sbjct: 120 YASENDIKGLFDDVDTRSNKLGSTVPERNERLALILEGIASLDFGSFEDNHIDLFGDAYE 179

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + S   +   +F TP+ V  L   +++     L K+    I  +YDP CG+G  L
Sbjct: 180 FLISNYASNAGKSGGEFFTPQSVSRLLARIVM-----LGKDEKNKINKIYDPACGSGSLL 234

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     +             +GQE+   T+ +    M +  +  D       +I++G+
Sbjct: 235 LQAKKQFTEHIIEDG------FYGQEINMTTYNLARMNMFLHNINYDK-----FSIERGN 283

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL        K F   +SNPP+  KW    D            RF P   L   S     
Sbjct: 284 TLLDPKHGNDKPFDAIVSNPPYSIKWVGSDDPTLINDD-----RFAPAGILAPKSKADFA 338

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+MH  + L    +  GRAAIV      + G A   E +IR++L++ + +E ++ LP +L
Sbjct: 339 FIMHSLSYL----SNKGRAAIVTFPGIFYRGGA---EQKIRQYLVDGNFVETVIQLPDNL 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            F T+IAT + IL+  K       V  I+A+  +    N      ++ ++   +IL    
Sbjct: 392 LFGTSIATCILILAKNKPTT---DVLFIDASQQFKKETN----NNVLTEENIEKILKSVE 444

Query: 458 SRENGK-FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            + N + F++++           + V   +      +K  +  L  +I 
Sbjct: 445 HKNNEEYFAQLISQEKIVEADYNLSVSTYVEKEDTREKINIDVLNKEIA 493


>gi|194098143|ref|YP_002001191.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae NCCP11945]
 gi|193933433|gb|ACF29257.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae NCCP11945]
          Length = 514

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 202/534 (37%), Gaps = 74/534 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  E     VKV GY  Y   +   +     +    L + +           
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSA 119

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                    K +F+DFD +S+       +K   L  + K  + ++  + +     +  + 
Sbjct: 120 SGYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIEL 280

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+       K F   +SNPP+   W    D            RF P   L   S   
Sbjct: 281 GDTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 336 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ +
Sbjct: 389 NLFYGTCIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKL 441

Query: 456 YVSRENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 442 FADKAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 492


>gi|219851734|ref|YP_002466166.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
 gi|219545993|gb|ACL16443.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
          Length = 513

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 103/499 (20%), Positives = 195/499 (39%), Gaps = 38/499 (7%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W+ A  + G+     +   ILP   L+RL    +     +   Y         L 
Sbjct: 15  LESWLWEAACKIRGEIDAPKYKDYILPLIFLKRLSDVFDDEAKKMERTYGNRDLVEKILA 74

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKAIFEDFDFSSTI--A 125
              ++  +     S +      ST       +    IA  +   +   +  DF++T    
Sbjct: 75  EDHQLVRFYLPPESRWDAIAQKSTGLGELLTDAMRSIARENPKLQGSIDIVDFNATAAGQ 134

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+     L  +        L    V   ++ + YE+L+R+F     + A +F TPR+V  
Sbjct: 135 RIIPDDSLRTLIGVMGKYRLGLADVEPDIIGHAYEYLLRKFAEGSGQSAGEFYTPREVAL 194

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   +L           P     +YDP CG+GG L     +  +   +      L   GQ
Sbjct: 195 LMARIL----------DPKPGEEVYDPCCGSGGLLIKCAMYFRERYHNDPEVAPLQFCGQ 244

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E +  T A+      I  +E+  +  L   ++    L++D  + + F    +NP + +  
Sbjct: 245 ENQHSTFAMAKMNTFIHDMEA--QIALQDTMRFPQFLNRDG-SLRLFDIVTANPMWNQ-- 299

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
               D  +K ++     RF  G P  S     ++ H+   L+      GR A+VL +  +
Sbjct: 300 ----DFEQKIYETDTYNRFTIGYPPSSSADWGWIQHMFASLK----KNGRMAVVLDTGAV 351

Query: 366 FNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             G   +G   E +IR+   E+DL+EA++ LP +LF+ T     + +++  K    +G++
Sbjct: 352 SRGSGNTGKNRERDIRKNFAEHDLVEAVILLPENLFYNTTAPGIILVINQGKL--HKGEI 409

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVL 481
            L+NA+ L+   R +      I D+   Q+  I+   +   + S ++           + 
Sbjct: 410 LLVNASKLFQKGRPK----NFIPDECIAQVAGIFRDWKAVDEISTIVSAIDIAKNDFNLS 465

Query: 482 RPLRMSFILDKTGLARLEA 500
               ++       L   +A
Sbjct: 466 PSRYVAQNGKDETLPLEDA 484


>gi|320536229|ref|ZP_08036275.1| type I restriction-modification system, M subunit [Treponema
           phagedenis F0421]
 gi|320146931|gb|EFW38501.1| type I restriction-modification system, M subunit [Treponema
           phagedenis F0421]
          Length = 526

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 123/540 (22%), Positives = 199/540 (36%), Gaps = 76/540 (14%)

Query: 1   MTEFTG------SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------ 48
           M   T         A L   IW  A+++ G     DF + IL     R +   +      
Sbjct: 1   MANNTNGSNGMVQRAELHRKIWAIADEVRGAVDGWDFKQYILGILFYRFISENMMEFFNS 60

Query: 49  ---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E          ++   +  D       A   F   S+   + + +     NL + +A
Sbjct: 61  AEHEAGDPEFDYAKISDKEAEKDFRPNTVEAKGFFILPSQLFKNVVKTARKNENLNTDLA 120

Query: 106 SF-------------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPD 148
           +               ++ K +FED D +S        EK   L  I    S I   +  
Sbjct: 121 NIFKSIESSAVGFKSENDIKGLFEDVDTTSNRLGGTVAEKNSRLADILIGISEINFGNFQ 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   + YE+LI  + S   +   +F TP+ V  L   L++D    + K        
Sbjct: 181 DNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTNVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L        +              GQE+      +    M +  +  + 
Sbjct: 233 VYDPTCGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNVNYN- 285

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               + +I++G TL   L   ++ F   +SNPP+  KW  D D            RF P 
Sbjct: 286 ----NFSIKRGDTLLNPLHNNEKPFDAIVSNPPYSIKWIGDDDPTLIND-----ARFAPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S     F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+
Sbjct: 337 GKLAPKSYADYAFIMHSLSYL----SSKGRAAIVCFPGIFYRKGA---ELTIRKYLVDNN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP +LFF T+IAT + +++  KTE    K   I+A   +    N      I+ 
Sbjct: 390 FIDCIIQLPENLFFGTSIATCVLVMAKNKTE---NKTLFIDAGKEFKKETN----NNILE 442

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
           D    +I+  +  R N + FSR++D            V   +      +   +  L  +I
Sbjct: 443 DKNIEKIVAEFRDRTNIEYFSRLVDNSEIAENDYNLSVSTYVEKEDTREIIDIKVLNKEI 502


>gi|282865862|ref|ZP_06274911.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282559186|gb|EFB64739.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 886

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 112/528 (21%), Positives = 194/528 (36%), Gaps = 66/528 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T   A L   ++  A+ L G    +++   I     L+R     E  R  ++E+  
Sbjct: 1   MAKLT--LAQLERHLFAAADILRGTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAK 58

Query: 61  -AFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFS 108
             +G    +L++F++              E +     S  TRN  ES        +   +
Sbjct: 59  RDWGFDGEELDAFLEQEAPYRERDVLFVPEKARWHEISGVTRNINESVLRPALQLLEGQN 118

Query: 109 DNAKAIFEDFDFSS-------TIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYE 160
           +    +F+  DF+                  L  +  +F  + L  D      ++   YE
Sbjct: 119 EKLTGLFDHLDFNRIGGSGAAAGTATLADKRLELLIAHFGRVRLRTDDFEFPDLIGAAYE 178

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI+ F         +F TPR VV +   LL          +P     +YDP  G+GG L
Sbjct: 179 YLIKEFADSAGRKGGEFYTPRAVVRMMVELL----------APTQGMRIYDPCVGSGGML 228

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A  +V + G        +   GQ+    +  +    M++  +    R DL+       
Sbjct: 229 IHAAEYVEEHGGD---TSDMFFAGQDANSGSWIMSTMNMVLHGVR---RFDLTTGDTLAR 282

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFL 339
                     RF   LSNPPF   +     A   E       R   GL  +     ++FL
Sbjct: 283 PTHIPTSDADRFDGVLSNPPFSMDYTATDLAHRTE-------RTYYGLTSERGKADLMFL 335

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H+  + +     GG    V+    LF    G GE +IR  LL+ D +EA++ L  +LF+
Sbjct: 336 QHMLWETK-KEGRGGMVITVMPHGVLFR---GGGEQQIRTKLLDEDAVEAVIGLAPNLFY 391

Query: 400 RTNIATYLWIL---------SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            T I   + +L          + +  ER GKV  INA   + + R     + ++  +   
Sbjct: 392 GTGIPACILVLRPPGCKGRDRSEREPERAGKVLFINADREFHAERA----QNVLLPEHAE 447

Query: 451 QILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL 495
           +I   + +  E   FSR++           + + R +  +   +   +
Sbjct: 448 KITTTFRTFAEVPGFSRVVTREELAENDDNLNIRRYVDNTPPPEPQDV 495


>gi|315641380|ref|ZP_07896455.1| type I restriction-modification system DNA-methyltransferase
           [Enterococcus italicus DSM 15952]
 gi|315482873|gb|EFU73394.1| type I restriction-modification system DNA-methyltransferase
           [Enterococcus italicus DSM 15952]
          Length = 535

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 211/545 (38%), Gaps = 69/545 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTRSAV 55
              ++ +L   +W +A+ L       ++   +L     + L           LE + S +
Sbjct: 3   SNQNSKNLYQALWSSADILRSKMDANEYKNYLLGIVFYKYLSDRMLVFAVDLLEESASDL 62

Query: 56  REKYLAFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNL--------ES 102
            E  + F  +  D E      +     +S+      + + L     R             
Sbjct: 63  EEAQVIFTKAMDDGEVKDDLLYALKDEFSYLIEPSLTFTALVHDVYRGKFQLEDLAQGFR 122

Query: 103 YIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            I   ++  + +FED D  S        ++   +  + K  + ++L        ++ + Y
Sbjct: 123 NIEQSNELFENLFEDVDLYSKKLGATPQKQNQTIANVMKELADLDL---AHQGDILGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F SE  + A +F TP+ +  L T + +D  +           ++YDPT G+G  
Sbjct: 180 EYLISQFASESGKKAGEFYTPQPISELMTRIAIDGKED------QKGFSVYDPTMGSGSL 233

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L +      + G        +   GQEL   T  +    M++  ++S      +++++ G
Sbjct: 234 LLNVRRFSNEKG-------FINYFGQELNTSTFNLARMNMILHGVDS-----ANQHLRNG 281

Query: 280 STLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D  T +   F   L NPP+  KW  +K  ++    +     +G  L   S     
Sbjct: 282 DTLDGDWPTEEPTNFDAVLMNPPYSAKWSGEKGFLD----DPRFSMYGV-LAPKSKADFA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AI+L    LF G +   E +IR  LL N  I+ ++ LP ++
Sbjct: 337 FLLHGYYHLK----ESGVMAIILPHGVLFRGNS---EGKIREILLRNGAIDTVIGLPANI 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   +  +    V  I+A++ +T  +N    + ++  +    I+D Y 
Sbjct: 390 FFSTSIPTTVIILKKNRPNQ---DVLFIDASNGFTKGKN----QNVLEPNHIEAIIDTYQ 442

Query: 458 SRE-NGKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            R    K++ +   D        + + R +      +   L  L  +I     S      
Sbjct: 443 KRVSIEKYAHLATFDEIKENDFNLNIPRYVDTFEEEEPIHLGELAQEIAATNDSLAQAEK 502

Query: 515 WLDIL 519
            L  L
Sbjct: 503 ELATL 507


>gi|256841217|ref|ZP_05546724.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
 gi|256737060|gb|EEU50387.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
          Length = 510

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 105/515 (20%), Positives = 199/515 (38%), Gaps = 52/515 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L  F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKGFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            ++        G  + +  E +       +    +    N  +          + IF   
Sbjct: 76  QVEDLPIRIPDGAHWRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++    +   + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPDNIITS-LIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+      
Sbjct: 195 TNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEW---Q 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +   GQE+   T ++    + +  +E         +I    TL    F      ++F  
Sbjct: 242 SVQVFGQEVNGLTSSIAQMNLYLNGVED-------FSIACADTLEHPAFLDGSHLRKFDI 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPP+  K    +        N + GR   G P        FL H+   +       G
Sbjct: 295 VLANPPYSIKEWNREK-----FMNDKWGRNFLGTPPQGRADYAFLQHIIASM---NETQG 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+     LF       E E+R+ L+E D+++ I+ L  +LF+ + +   + I +  K
Sbjct: 347 RCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACILICNCSK 402

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTF 473
              ++ +V +INA +  T    E      +  +  ++I++ Y  +RE   FSR++     
Sbjct: 403 ANSKKNRVLMINAVNEVTRKNAESM----LLAEHIQRIVNAYQQNRELDGFSRIVSNDEI 458

Query: 474 GYRR--IKVLRPLRMSFILDKTGLARLEADITWRK 506
             ++  + +      S + D   +++ +A   W  
Sbjct: 459 REKKFNLNISLYAYQSVLQDALTVSKEDAINVWIS 493


>gi|254520681|ref|ZP_05132737.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA]
 gi|226914430|gb|EEH99631.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA]
          Length = 518

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 99/544 (18%), Positives = 210/544 (38%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
               SL   +W  A  L G  + ++F   IL     R L   +E     + E+       
Sbjct: 13  EQQGSLQTKLWDIANTLRGSMEASEFKNYILGLIFYRYLSENVEERALKLLEEDNVTYEK 72

Query: 66  NIDLESFVKVA--------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-------- 109
             + E + +          GY       + +   G      ++E+   + +D        
Sbjct: 73  AWEDEEYREALQEELVNDIGYFIEPKYLFRVLLRGIETGDFDIETLEEAINDITESTLGH 132

Query: 110 ----NAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
               +   +F+D D  ST    +   ++ ++ K+  + + I          ++ + YE+L
Sbjct: 133 ESEEDFDHLFDDMDLKSTKLGKDVKSRSEIIGKVMGSIASIPFKFGDSEIDILGDAYEYL 192

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 193 IGQFAANAGKKAGEFYTPQQVSRILAKIVTMDKKDL--------KNVYDPTCGSGSLLLR 244

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                           +   +GQE    T+ +    M++  +          NI+   TL
Sbjct: 245 VSKEA----------NVRTFYGQEKVSTTYNLARMNMILHGVSY-----KDFNIKNDDTL 289

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   +F   ++NPP+   W    D ++ E +    G+  P     S     F+ H+
Sbjct: 290 ENPQHKDMKFEAIVANPPYSANWSAKADFLDDE-RFSAYGKLAP----KSKADFAFIQHM 344

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
             +L    +  G  A+VL    LF G A   E  IR++L+E  ++++A++ LP ++FF T
Sbjct: 345 IYQL----DDNGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNVLDAVIGLPANIFFGT 397

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
           +I T + +  N + +  +  +  I+A++ +   +N    + ++ D+   +I++   +RE 
Sbjct: 398 SIPTVILVFKNNRKD--KENILFIDASNDFEKGKN----QNLLRDEDVEKIINTIRNREA 451

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S + +          +  P  +    ++  +       + +      +  +  + +
Sbjct: 452 IDKYSYVANIEEIKDNDYNLNIPRYVDTFEEEEEIDIKAVQESIKNRDKTLEELYKKLEE 511

Query: 521 PMMQ 524
            + +
Sbjct: 512 DLKE 515


>gi|229541311|ref|ZP_04430371.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229325731|gb|EEN91406.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 509

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 106/544 (19%), Positives = 199/544 (36%), Gaps = 58/544 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +   + + +W+ A+   G    + +   IL    ++ L    +       ++Y 
Sbjct: 1   MVEQT-TQEKINSVLWQAADTFRGKIDSSTYKDYILTMLFIKYLSDTYKEKLEEYTKRYN 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                       E FV     +F                   LE      S   + +F +
Sbjct: 60  GDEQRIQRALSRERFVLDETSTFDYLYSKRNDPEIGEIINKALERIENENSGKLRGVFRN 119

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEG 173
            DF+S        E+  +L  + ++F+ + L P  + +  ++ N Y+++I  F S+  + 
Sbjct: 120 IDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFASDAGKK 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP +V  L   L+           P     +YDPTCG+G  L      V      
Sbjct: 180 GGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQVP----- 224

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                 +  +GQE    TH++ +  M +  ++          I+ G TL+  L       
Sbjct: 225 ---SKKVAIYGQERNGATHSLALMNMYLHGIDDAK-------IEWGDTLANPLHLEDGKL 274

Query: 291 -RFHYCLSNPPFGKKWEK--------DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            +F   ++NPPF                   + E       RF  G+P  S G   F+ H
Sbjct: 275 MKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGDYAFVQH 334

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L       GR A +L    LF    G+ E +IR+ ++E +L++A++ LP  LF+ T
Sbjct: 335 MLYSL----AENGRMATILPHGVLFR---GASEGKIRKQIIELNLLDAVIGLPEGLFYGT 387

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   + +    +T +    V  I+A+        +GK +  + +    +I++ Y  RE 
Sbjct: 388 GIPACIMVFRKDRTRK---DVLFIDAS--GEEHYEKGKNQNKLREQDIEKIVETYEKRET 442

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +           +    +     + K
Sbjct: 443 IDKYSYVATIDEIRENDYNLNIPRYVDTFEEEEPVDMEAVKENIANIKKELKEVEAQMEK 502

Query: 521 PMMQ 524
            + +
Sbjct: 503 YLKE 506


>gi|229176526|ref|ZP_04303955.1| Type I restriction-modification system, M subunit [Bacillus cereus
           MM3]
 gi|228606963|gb|EEK64356.1| Type I restriction-modification system, M subunit [Bacillus cereus
           MM3]
          Length = 530

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 221/568 (38%), Gaps = 69/568 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L + ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 2   AELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTPEK 61

Query: 60  ---------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                          N  +E+ V   GY       +++ T  +       N  N     +
Sbjct: 62  QTQLYRDLLADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQLNDLNKAFIDL 121

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           ++  D    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 122 STKYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDIDVLGH--SGDVIGDAYEF 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  + 
Sbjct: 180 LIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ G T
Sbjct: 234 NIRNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 282 LNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFL 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF
Sbjct: 337 LHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFF 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +T      V  I+A++ +T  +N    +  ++ +   +I++ Y  R
Sbjct: 390 GTSIPTTVIILKKNRTTR---DVLFIDASNEFTKEKN----QNKLSKENIDKIVETYKKR 442

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E+  K++ +  +         +  P  +    ++  +       T + +          +
Sbjct: 443 EDVEKYAHIATFDEIKENDFNLNIPRYVDTFEEEAPVDMATIGSTIQDIRKEKAELESSL 502

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
              +    +    AE         N  K
Sbjct: 503 FDMISSLQFDEENAEWIKGALEVFNREK 530


>gi|228478347|ref|ZP_04062955.1| type I restriction-modification system, M subunit [Streptococcus
           salivarius SK126]
 gi|228250026|gb|EEK09296.1| type I restriction-modification system, M subunit [Streptococcus
           salivarius SK126]
          Length = 534

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/562 (21%), Positives = 211/562 (37%), Gaps = 67/562 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 49  ---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E   +  R+ Y         L        Y+ +    ++       +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++       FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +        ++ +
Sbjct: 233 GSLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG  L   S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGK-LAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+
Sbjct: 390 ANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            Y SRE+  KF+ +  +         + + R +      +   L  + A I     +   
Sbjct: 443 AYKSREDMDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIES 502

Query: 512 QSFWLDILKPMMQQIYPYGWAE 533
           Q+  L  +   +    P    E
Sbjct: 503 QTASLLDMLGQLHGTTPEADEE 524


>gi|315038269|ref|YP_004031837.1| type I restriction-modification system, M subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|312276402|gb|ADQ59042.1| type I restriction-modification system, M subunit [Lactobacillus
           amylovorus GRL 1112]
          Length = 557

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 223/572 (38%), Gaps = 77/572 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54
           M E T +   L + ++  A+ L       ++   +L     + L   L    +       
Sbjct: 1   MAE-TLTKTELEHALFSAADSLRSKMDANEYKNYLLGIIFYKYLSDKLLYIAAESLDPNF 59

Query: 55  --------VREKYLAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTR-------- 97
                   + +    +  +  D E    +     Y  S E++ + + +            
Sbjct: 60  IDDRDDLPLDKWQKMYAENADDAELLSDLKATLMYLISPEHTFTYIFNEINGEARTKDGN 119

Query: 98  ---------NNLESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL 145
                     +  + I S S +   +F+D    S        ++A  + ++ K+   I L
Sbjct: 120 LKTFQISDLADAFNDIESTSKDFDGLFKDVQLYSQKLGSNAQKQADTISEVIKSIGKINL 179

Query: 146 ---HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
                    +  + + YE+LIR F SE  + A +F TP+ V  L T L L        + 
Sbjct: 180 IEQDDQNNKNDTLGDAYEYLIREFASESGKKAGEFYTPQKVSELLTKLTL------VGKK 233

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                T+YDP  G+G  L +   ++ D       P  ++ +GQE+   T  +    M++ 
Sbjct: 234 YPEGMTVYDPAMGSGSLLLNFKKYIKDFAG--GDPNKVIYYGQEINISTFNLARMNMILH 291

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            ++S      +++++QG TL  D     +  F   + NPP+  KW  +K  + ++ +   
Sbjct: 292 GVDS-----GNQHLRQGDTLDADWPPISQTMFDAVVMNPPYSLKWSANKGFL-QDPRFSP 345

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            G   P     S     FL+H    L+      G  AIVL    LF G A   E +IR+ 
Sbjct: 346 YGVLAP----KSKADYAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA---EGKIRKK 394

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLEN  I+A++ LP +LF+ T+I T + +L   K       V  I+A+  +   +N    
Sbjct: 395 LLENGSIDAVIGLPANLFYNTSIPTVILVLKKNKENR---DVIFIDASKGFEKKKN---- 447

Query: 441 RRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR 497
           +  + ++  ++ILD Y   E+  +++ +  Y         + + R +          L +
Sbjct: 448 QNELREEDIQKILDTYEKHEDVERYAHLAKYDEIEENDFNLNIPRYVDTFIPEPPVDLKK 507

Query: 498 LEADITWRKLS-PLHQSFWLDILKPMMQQIYP 528
           + +D+    +    +Q   + +LK +      
Sbjct: 508 VASDLHDTNVEIEKNQKELVGMLKELTSDDSD 539


>gi|149915111|ref|ZP_01903639.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b]
 gi|149810832|gb|EDM70671.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b]
          Length = 508

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 117/531 (22%), Positives = 212/531 (39%), Gaps = 72/531 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +   ++  A+ + G     ++  V L    LR +  A E  R+   E  L      IDLE
Sbjct: 5   IEKILFSAADKMRGAMDPGEYKHVALGLLFLRYVSAAFEAKRAEFAEDDL------IDLE 58

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR--------NNLESYIASFSDNAKAIFEDFDFSS 122
              +    S +   E +     + N +        ++    I   +   +         +
Sbjct: 59  DPEEYQAESVFWVPEGARWDRLAANAKAHDIGVQVDDAMREIERANPTLQDALPKVYGRA 118

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + R     ++  + + F+ +ELH  +    ++  IYE+ I  F S   +   +F TP+ 
Sbjct: 119 NLDR----SIVTGLIEMFTNLELHGTSADFDLIGRIYEYFIGEFASSEGKRGGEFYTPKS 174

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV +   +L                 +YDP CGTGGF   +   +    +H      +  
Sbjct: 175 VVSVLVEMLEP-----------TSGRVYDPCCGTGGFFVQSEKFIE---AHQGRIGDIAV 220

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR +  D R +      Q  TL ++ F  +RF + L+NPPF 
Sbjct: 221 YGQERNHTTFRLARMNLAIRGILGDIRWN------QEGTLKRNAFPDERFDFILANPPFN 274

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                D D + ++H      R+  G P + + +  ++ H+ + L    +  G A +V+++
Sbjct: 275 ISDW-DSDQLREDH------RWKFGTPPVGNANFAWMAHVHHHL----SANGIAGVVMAN 323

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             + + +  SGE EIR+ +++ D ++AIVALP  LFF T I   LWIL+  K+       
Sbjct: 324 GSMSSMQ--SGEGEIRKAMVQQDAVDAIVALPGQLFFGTQIPACLWILAKDKSNGQAAGR 381

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----------ENGK 463
              +RR +V  I+A  +   I    +K++ +++D+  +I   Y +           +   
Sbjct: 382 TLRDRRQEVLFIDARKMGALIP-GSRKQKKLSEDEIGKIAGAYHAWRGELGDDAYADEPG 440

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           F +             VL P R               +   R +  L + F
Sbjct: 441 FCKAARIDEIEQHNF-VLTPGRYVGAWAAEEDGEPFVEKFDRLMGELREQF 490


>gi|317180611|dbj|BAJ58397.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 527

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 116/532 (21%), Positives = 207/532 (38%), Gaps = 70/532 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           + +     L N IWK A +L G     DF + +L     R +   +    +    K    
Sbjct: 9   QASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERKRDPS 68

Query: 59  ----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
                L+   +    E  ++  G+ F   S    + L +    ++L   + +        
Sbjct: 69  FDYALLSDEEAEGAKEGLIEEKGF-FIPPSALFCNVLKNAPNNDDLNVTLQNIFNEIEKS 127

Query: 108 ------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
                  +N K +F D D +S     +   +   L KI +   G++L         V  +
Sbjct: 128 SLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYLKSGIDVFGD 187

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G
Sbjct: 188 AYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSG 239

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      + D              GQE+   T+ +C   M +  +          +I 
Sbjct: 240 SLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIV 288

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL        + F   +SNPP+  KW  D + +    +     RF P   L   +  
Sbjct: 289 HGDTLLDPKHKDDEPFDAIVSNPPYSTKWAGDNNPILINDE-----RFSPAGVLAPKNAA 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ + I+ ++ALP
Sbjct: 344 DLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIALP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL 
Sbjct: 397 DNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLKEHNREKILQ 449

Query: 455 IYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            Y+ R+  K F  +              V R +      +   +  L ++I+
Sbjct: 450 TYIERKEVKHFCALASMEQIKENDYNLSVNRFVEQEDTKEIIDIKALNSEIS 501


>gi|329963228|ref|ZP_08300965.1| type I restriction-modification system, M subunit [Bacteroides
           fluxus YIT 12057]
 gi|328528924|gb|EGF55864.1| type I restriction-modification system, M subunit [Bacteroides
           fluxus YIT 12057]
          Length = 517

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 212/548 (38%), Gaps = 72/548 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG-- 64
              L + +W+ A  L G+   +DF    L F   + L   +E    +A+ +  + F    
Sbjct: 6   QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDEITFKELW 65

Query: 65  --SNIDLESF--------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
              + D+           ++  GY       +S          N L     S        
Sbjct: 66  EMDDTDVVELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKWKENILPILERSLKRIEDST 125

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
                 ++   +F D D +S        +K  L+  +      I+   +   +  ++ + 
Sbjct: 126 LGQDSEEDFGGLFSDIDLASPKLGKTANDKNTLVSNVLLALDDIDFSVEASQEIDILGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE++I +F +   + A +F TP++V  +   ++      L        R +YDPTCG+G 
Sbjct: 186 YEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGHQRL--------RNVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A +          I   +  +GQE  P T+ +    ML+  +     R  +  I+ 
Sbjct: 238 LLLRAAS----------IGNAVDIYGQEKNPTTYNLARMNMLLHGI-----RFSNFKIEN 282

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL  D+F   +F   ++NPPF  +W    D    + +  + GR  P           F
Sbjct: 283 GDTLEWDVFGDTQFDAVVANPPFSAEWSA-ADKFNTDDRFSKAGRLAP----KKTADYAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDL 397
           ++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI+ LP ++
Sbjct: 338 ILHMIYHL----NEGGAMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + ++   + E+    +  I+A+  +  +    K +  +  +   +I+D Y 
Sbjct: 391 FYGTSIPTCILVMKKCRKED--DNILFIDASKEFEKV----KTQNKLRKEHIDKIVDTYR 444

Query: 458 SR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R E  K+S +   +        +  P  +    ++  +         ++L         
Sbjct: 445 ERKEIEKYSHLATLQEVADNDYNLNIPRYVDTFEEEEPIDIKAVMAEIKELEAKRAELDK 504

Query: 517 DILKPMMQ 524
           +I   + +
Sbjct: 505 EIEVYLKE 512


>gi|293401669|ref|ZP_06645811.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304927|gb|EFE46174.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 508

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 197/532 (37%), Gaps = 63/532 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A +   + + E+  
Sbjct: 1   MASNNANIG-FEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFDKRYNELVEE-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    +    F+   +   S +             ++    I + +   K 
Sbjct: 58  ---GYGFENDRDAYIEENVFFVPEKARWSYISKNAHTHEIGKVIDDAMRAIEAENKTLKN 114

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      +  + +     +L  +   F+ +++        ++   YE+ I+ F +     
Sbjct: 115 VLPKNYATPDLDK----RVLGNVVDVFNCVDMKDTEDSKDLLGRTYEYCIQEFAAHEGVK 170

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L   D+            +YDP CG+GG    ++  +    +H
Sbjct: 171 GGEFYTPSSIVKTIVEILKPFDNC----------RVYDPCCGSGGMFVQSVKFLQ---AH 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE   +T  +    M IR +++      +       T  +DL    +  
Sbjct: 218 SGNRNRISVYGQESNADTWKMAKMNMAIRGIDA------NFGPYHADTFFEDLHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF             + K  E  R+  G+P   + +  ++ H+ + L       
Sbjct: 272 FIMANPPFNLSNWG-------QDKLKEDKRWVYGIPPAGNANFAWIQHMIHHL----APN 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L      SGE +IR+ ++E DLIE IVALPT LF+   I   LW ++  
Sbjct: 321 GKIGLVLANGAL--SSQTSGEGQIRKNIIEADLIEGIVALPTQLFYSVTIPVTLWFITKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENGK----- 463
           K  +++GK   I+A  +      + +   +   +        ++   +   + G      
Sbjct: 379 K--KQKGKTLFIDARKMGYMADRKHRDFTVGIQEDGSLGDVDKLAKTFELFQEGNLEDIK 436

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            F ++        +   +L P R   I ++        D   R  S L   F
Sbjct: 437 GFCKVASTEDIIKQDY-ILTPGRYVGIEEQEDDGEPFDDKMKRLTSELSDMF 487


>gi|322372660|ref|ZP_08047196.1| type I restriction-modification system, M subunit [Streptococcus
           sp. C150]
 gi|321277702|gb|EFX54771.1| type I restriction-modification system, M subunit [Streptococcus
           sp. C150]
          Length = 534

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 121/562 (21%), Positives = 211/562 (37%), Gaps = 67/562 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 49  ---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E   +  R+ Y         L        Y+ +    ++       +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPNLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SFSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F D  ++       FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 179 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTIYDATMGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +        ++ +
Sbjct: 233 GSLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARMNMILHGV-----PIENQFL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW      ++    +     FG  L   S  
Sbjct: 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD----DPRFSPFGK-LAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 336 DFAFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLP 389

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+
Sbjct: 390 ANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILN 442

Query: 455 IYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            Y SRE+  KF+ +  +         + + R +      +   L  + A I     +   
Sbjct: 443 AYKSREDMDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIES 502

Query: 512 QSFWLDILKPMMQQIYPYGWAE 533
           Q+  L  +   +    P    E
Sbjct: 503 QTASLLDMLGQLHGTTPEADEE 524


>gi|325695188|gb|EGD37089.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK150]
          Length = 535

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 122/574 (21%), Positives = 214/574 (37%), Gaps = 67/574 (11%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
           MT+ T  ++  L   +W +A+ L       D+   +L     + L   L           
Sbjct: 1   MTQETIQTSQRLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKLLFFVAETMGEE 60

Query: 49  ----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRN 98
               E      R  Y         ++   +   Y+      ++   L             
Sbjct: 61  TEDLEQALDIYRRYYEDEETKADLIDVIKQDLSYAMKPDLTFTNLVLQVNSGTFQLEHLA 120

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVM 155
                I    +  + +FED D  S        ++   +  + K  + +++        ++
Sbjct: 121 QGFRNIEQSDELFENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDML 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYDPT G
Sbjct: 179 GDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QKGFTLYDPTMG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A  +  + G+       +   GQEL   T+ +    M++  +        ++ 
Sbjct: 233 SGSLLLNAKRYSHEAGT-------VSYFGQELNTATYNLARMNMILHGV-----PIENQF 280

Query: 276 IQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +    TL +D  T +   F   L NPP+  KW     A +   ++     FG  L   S 
Sbjct: 281 LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWS----AADGFLQDPRFSSFG-ALAPKSK 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+     GG  AIVL    LF G A   E +IR+ LLE   I+ ++ L
Sbjct: 336 ADFAFLLHGFYHLKQA---GGVMAIVLPHGVLFRGNA---EGKIRKALLEEGAIDTVIGL 389

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL
Sbjct: 390 PANIFFNTSIPTTVIILKKDRTNR---DVFFIDASKEFDKGKN----QNIMTDIHIDKIL 442

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           ++Y +RE+  KFS +  +         +  P R     ++  +  L   +T    +    
Sbjct: 443 EVYKAREDVNKFSHLASFEEIVENDYNLNIP-RYVDTFEEEEVEPLTEIVTKINRTNKEI 501

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
                 L  M+ Q+           E   +   K
Sbjct: 502 ESKTAELVNMLGQLKGTTPEAQEELEKFLAEFEK 535


>gi|325924114|ref|ZP_08185679.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
 gi|325545416|gb|EGD16705.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
          Length = 525

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 110/558 (19%), Positives = 211/558 (37%), Gaps = 63/558 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  ++   +W   +   G    + +   +L    L+ +    +      + K+ 
Sbjct: 1   MNKTDIAQDTINAAVWTACDTFRGTVDPSVYKDYVLTMLFLKYVSDVWQDHYDDYKTKHG 60

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              G   +L   E FV     +FY   +              L +   +     + +F+D
Sbjct: 61  NKPGLIEELLKNERFVLPHRANFYTLYDQRHRPGNGERIDTALHAIEDANLGKLRDVFQD 120

Query: 118 FDFSSTIARLE--KAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F++     E  K  LL  + ++F+   + L P  +    ++ N YE+LI+ F S   +
Sbjct: 121 ISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFASSSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+G  L      + +   
Sbjct: 181 KAGEFYTPPEVSALMARLM----------DPQQGDEICDPTCGSGSLLLKCGRLIRERTG 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFTG- 289
             K       +GQE    T A+    M +   ++      D  +N +       D F   
Sbjct: 231 SGKY----ALYGQEAIGSTWALAKMNMFLHGEDNHRIEWGDTIRNPKLLDGERWDPFAAA 286

Query: 290 -----------------KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                            K F   ++NPPF  +KW  D   V+         RF  GLP  
Sbjct: 287 RGKNAKTHGSLTKPQTLKHFDIVVANPPFSLEKWGHDTAEVDPHD------RFRRGLPPR 340

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + G   F++H+   ++      GR A+V+    LF G A   E  IR+ L+E +L++ ++
Sbjct: 341 TKGDYAFILHMIEVMKPK---SGRMAVVVPHGVLFRGAA---EGRIRQKLIEENLLDVVI 394

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP  LF+ T I   + +   +K ++   KV  I+A+  +   +N    + ++ +   ++
Sbjct: 395 GLPEKLFYGTGIPAAVLVFRTKKKDK---KVLFIDASRQYQDGKN----QNLLRESDLQR 447

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           ILD   +R+N  K++ +            +  P  +    ++  +  +       +L   
Sbjct: 448 ILDTVQARQNVDKYAYLASPDEIAGHDYNLNIPRYVDTFEEEAEIDLMAVRREREQLKGE 507

Query: 511 HQSFWLDILKPMMQQIYP 528
             +  + +   + +  Y 
Sbjct: 508 LATLEMQMAAYLKELGYE 525


>gi|229042277|ref|ZP_04190029.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH676]
 gi|228727068|gb|EEL78273.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH676]
          Length = 530

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 118/568 (20%), Positives = 221/568 (38%), Gaps = 69/568 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------------EP 50
           A L + ++  A++L      +++   +L     + L   L                  E 
Sbjct: 2   AELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTPEK 61

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASF 107
                RE        N  +E+ V   GY       +++       +T   N+L       
Sbjct: 62  QTQLYREALADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQLNDLNKAFIGL 121

Query: 108 S---DNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S   D    +F+D D  S     +   +   + ++ K  + I++        V+ + YE 
Sbjct: 122 STKYDQFNGLFDDMDLKSKKLGSDDQQRNITVTEVLKKLNDIDVIGHN--GDVIGDAYEF 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  + 
Sbjct: 180 LIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++ +       +++ G T
Sbjct: 234 NIRNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKE-----DMSLRNGDT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 282 LNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFL 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF
Sbjct: 337 LHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFF 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +T      V  I+A++ +T  +N    +  ++ +   +I++ Y  R
Sbjct: 390 GTSIPTTVIILKKNRTTR---DVLFIDASNEFTKGKN----QNKLSKENIDKIVETYKKR 442

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E+  K++ +  +         +  P  +    ++T +       T + +          +
Sbjct: 443 EDVEKYAYVATFDEIKENDFNLNIPRYVDTFEEETPVDMATIGSTIQDIRKEKVKLESSL 502

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
              +    +    AE         N  K
Sbjct: 503 YDMISSLQFDEENAEWIKGALEVFNREK 530


>gi|328947421|ref|YP_004364758.1| type I restriction-modification system, M subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447745|gb|AEB13461.1| type I restriction-modification system, M subunit [Treponema
           succinifaciens DSM 2489]
          Length = 514

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 114/544 (20%), Positives = 207/544 (38%), Gaps = 63/544 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61
              A L   IWK A ++ G     DF + +L     R +        E    ++    L 
Sbjct: 5   QQRAELQAQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFCAYIEADDESIVYASLE 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
                 +++         F   S+  ++   + N   +L + +A                
Sbjct: 65  DSIITPEIKDDAIKTKGYFIYPSQLFVNIAKNANDNESLNTDLAEIFSEIEKSATGYDSE 124

Query: 109 DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIR 164
            + K +F DFD +S        EK   L  +    SG+   +       +  + YE LI 
Sbjct: 125 QDIKGLFADFDTTSNRLGNTVKEKNSRLAAVINGVSGLNFGNFHDNQIDLFGDAYEFLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP++V  L   L +   + + K        +YDP CG+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQNVSKLIARLAMHKQENVNK--------IYDPACGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              GQE+   T+ +    M +  +  D       NI+ G TL+ 
Sbjct: 237 KQFEENKIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIKLGDTLTN 285

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F   + F   +SNPP+   W    D            RF P   L   S     F++H
Sbjct: 286 PQFKDDKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFILH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+ T
Sbjct: 341 SLNYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISLAPNLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IA  + +LS  K +    K+Q I A +L+    N      I+ D+   +I++ + S+ +
Sbjct: 394 SIAVNILVLSKHKEDT---KIQFIEAGELYQKETN----NNILTDEHIEKIIEAFDSKND 446

Query: 462 GK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            + F++  +          +     +     +  +  +E +   R++         +I K
Sbjct: 447 IQYFAKSAELEEIAKNDYNLSVSSYVEAKDTREKIDIMELNAKIREIVARENVLRAEIDK 506

Query: 521 PMMQ 524
            + +
Sbjct: 507 IVDE 510


>gi|153829663|ref|ZP_01982330.1| type I restriction-modification system, M subunit [Vibrio cholerae
           623-39]
 gi|148874839|gb|EDL72974.1| type I restriction-modification system, M subunit [Vibrio cholerae
           623-39]
          Length = 510

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/540 (21%), Positives = 206/540 (38%), Gaps = 61/540 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
               +   +   +W +     G     D+  +IL    L+ +    +      + +Y   
Sbjct: 2   NENINQDRINKALWDSCNIFRGTTDADDYIDLILTMLFLKYISDVWQDHYDGYKAQYGDA 61

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIF 115
                  +  E F      SFY   E+             L +   +      D+ K++F
Sbjct: 62  SELIEETVQYERFALPKNASFYYLYEHRNEPGNGKRIDQALHAIEEANGTKLRDSGKSVF 121

Query: 116 EDFDFSSTI--ARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEV 170
           +D  F++       +K  +L  + + F+   + L P  V    V+ N YE+LI+ F    
Sbjct: 122 QDISFNTDRLGEDKQKNNILRYLLEVFAKPELNLKPSRVSTLDVIGNAYEYLIKNFAVSS 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + + +F TP +V  L T LL           P    ++ DPTCG+G  L    N V   
Sbjct: 182 GKKSGEFYTPPEVSDLITELL----------EPQPGDSICDPTCGSGSLLIKCGNKVRTK 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                       +GQE+   T +     M +   +       +  I+ G T+       K
Sbjct: 232 FD----SKNYALYGQEMNGSTWSRAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF       +DA     +N +  RF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVAANPPFSVDQWGHEDA-----ENDKFNRFRRGIPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR  +++    LF    GS ES+IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKPKT---GRMGVIVPHGVLFR---GSTESKIRQQLIDENLLDAVIGLPDKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I    K ++    V  I+A+  +   +N    +  ++ D   +I+  Y + EN  K+
Sbjct: 390 VILIFKKEKVDD---NVLFIDASHEFKPGKN----QNQLSADNIAKIVATYKANENVDKY 442

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK--LSPLHQSFWLDILK 520
           + +   +        + + R +       K  L  + A+    K  L+ L       + K
Sbjct: 443 AYLASLKDIQDNDYNLNIPRYVDTFEEEKKIDLMAVHAEREQLKAHLASLEDEMTGYLAK 502


>gi|317178792|dbj|BAJ56580.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 529

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/566 (21%), Positives = 211/566 (37%), Gaps = 78/566 (13%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQAPKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYI 60

Query: 53  SAVREK------YLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
           +    +      Y +      +  +  + V    F   S    + L +     +L   + 
Sbjct: 61  NKQERELNPGFDYASLSDEEAESAKEGLIVEKGFFIPPSALFCNVLKNVPNNGDLNVTLQ 120

Query: 106 SF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT 149
           +               +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFESEENLKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK 286

Query: 269 RRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +    +     RF P 
Sbjct: 287 -----FHIALGDTLLDPKHKDDEPFDAIVSNPPYSTKWAGDNNPILINDE-----RFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGHA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLK 442

Query: 446 DDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
           +  R +IL  Y  R+    FS +              V R +      +   +  L ++I
Sbjct: 443 EHNREKILKTYTERKAIKHFSALASIEKIKENDYNLSVNRFVEQEDTKEIIDIKALNSEI 502

Query: 503 TW--RKLSPLHQSFWLDILKPMMQQI 526
           +   +K S L  S    I +    Q 
Sbjct: 503 SQIVQKQSALRNSLDRIIKELEEGQN 528


>gi|52082597|ref|YP_081388.1| putative Type I restriction-modification system M subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52787994|ref|YP_093823.1| hypothetical protein BLi04318 [Bacillus licheniformis ATCC 14580]
 gi|52005808|gb|AAU25750.1| putative Type I restriction-modification system M subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52350496|gb|AAU43130.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 509

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 109/544 (20%), Positives = 203/544 (37%), Gaps = 58/544 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   +   + + +W+ A+   G    + +   IL    ++ L  A +       ++Y 
Sbjct: 1   MSEK-VTKDQINSVLWQAADTFRGKVDSSTYKDYILTMLFIKYLSDAYKEHLEEYTKRYN 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                       E FV     +F                   LE      +   + +F +
Sbjct: 60  GDEQRIQRALSRERFVLDEQSTFDYLYSKRNDAEIGEIINKALERLENENTGKLRGVFRN 119

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEG 173
            DF+S        E+  +L  + ++F+ + L P  V  + V+ + Y+++I RF S+  + 
Sbjct: 120 IDFNSEAILGKAKERNAMLRSLLEDFNKLTLKPSVVGSEDVIGDAYQYMIERFASDAGKK 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP     L   L+           P     +YDPTCG+G  L    N V +    
Sbjct: 180 GGEFYTPSMASELLARLV----------KPQENDRVYDPTCGSGSLLIRVANQVPN---- 225

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                 +  +GQE    TH++ +  M +  ++          I+ G TL+  L       
Sbjct: 226 ----KKVAIYGQERNGATHSLALMNMYLHGIDDAK-------IEWGDTLANPLHLEDGKL 274

Query: 291 -RFHYCLSNPPFGKKWEK--------DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            +F   ++NPPF              +    + E       RF  G+P  S G   F+ H
Sbjct: 275 MKFQAIVANPPFSLDKWAMGFAGEGTNDSKFKMEASLDPHRRFEWGVPPSSKGDYAFVQH 334

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L       GR A +L    LF    G+ E +IR+ ++E +L++A++ LP  LF+ T
Sbjct: 335 MLYSL----AENGRMATILPHGVLFR---GASEGKIRQQIIEMNLLDAVIGLPEGLFYGT 387

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   + +    +T +    V  I+A+        +GK +  + +    +I+D Y  RE 
Sbjct: 388 GIPACILVFKKNRTRK---DVLFIDASAEGN--YEKGKNQNQLREQDIAKIVDTYEKRET 442

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +           +    Q    ++ K
Sbjct: 443 IDKYSYVATLDEIKENDYNLNIPRYVDTFEEEEPVDMHAVKENIANIKQELQEVEAEMEK 502

Query: 521 PMMQ 524
            + +
Sbjct: 503 YLKE 506


>gi|225026005|ref|ZP_03715197.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353]
 gi|224956655|gb|EEG37864.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353]
          Length = 532

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 213/569 (37%), Gaps = 71/569 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M E   S   L + +W  A+ L       ++   +L     + L  +             
Sbjct: 1   MAEIENS-KDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDMICDGK 59

Query: 50  -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------- 99
             T     E Y     S    E   ++     Y        T  +   RNN         
Sbjct: 60  PGTLKEALEAYEEVLQSEDGEELKAEMKQECHYVIEPELTYTCFADAARNNSFNREQLQK 119

Query: 100 LESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             + I         +F D D  S        +++  +  + K     +L        ++ 
Sbjct: 120 AFNNIEQSDPIFADLFTDIDLYSNRLGTGDQKQSDTVANLIKEIDKADLLNSDAE--ILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP+ V  + T + +D  +           ++YDP  G+
Sbjct: 178 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAIDGQEE------KKGLSVYDPCMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +V       K P  +  +GQEL   T+ +    M +  + ++     ++ +
Sbjct: 232 GSLLLNAKKYV-------KYPEYIRYYGQELNTSTYNLARMNMFLHGIVAE-----NQKL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  TG+   F+  L NPP+  KW      ++ E +  + G   P     S  
Sbjct: 280 RNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDE-RFSDYGVLAP----KSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 335 DYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +    N+GKK+  + D+    ++D
Sbjct: 388 ANLFYNTSIPTCIIVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIEAVMD 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL--EADITWRKLSP 509
           +Y  RE   K S +  +         + + R +       +  L  +  E + T +++  
Sbjct: 441 LYSKRETVEKESFLASFEDIEKNDFNLNIPRYVDTFEKEPEIDLNEVLKEMEQTNKEIEQ 500

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKE 538
               F   + +               VK+
Sbjct: 501 AEGEFLSLLKELTSSDEKIMASLNELVKK 529


>gi|37680390|ref|NP_934999.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199137|dbj|BAC94970.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 509

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/505 (22%), Positives = 202/505 (40%), Gaps = 46/505 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + + P    +RL        +   E +       
Sbjct: 15  NKNKLEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLSDVYLEEYNEALELH------E 68

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFS 121
            D E       + F    E S   + +T+        N    I + ++    +F D  ++
Sbjct: 69  GDAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQWT 128

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 129 NK-ERLPD-HLLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 186

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T ++                + YDPTCGTGG L +A+  +   G   +    + 
Sbjct: 187 TVVHLMTRIM----------KLKPGESAYDPTCGTGGMLLNAVMDLRSQGEEWR---GVH 233

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE+   T A+    M +  +E     D+ +    G     +    K+F    +NPP+
Sbjct: 234 LYGQEVNLLTSAIARMNMFLHDIE---EFDVMRGDTLGDPKFIENDQLKQFDVIFANPPY 290

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K    +            GR   G+P        F  H+   L+      GRAA++  
Sbjct: 291 SIKKWNREK-----FAADPYGRNMYGVPPQGCADYGFYTHIIKSLK---PDTGRAAMLWP 342

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K  ER+ K
Sbjct: 343 HGVLFRDS----EQAIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPFERKNK 398

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKV 480
           +  IN  +  T  R   +    ++DD    + + Y   ++ G  + ++D       +  +
Sbjct: 399 ILFINGVEHVTRERAHSR----LSDDDLDVLCEAYFKPDSHGDIAALVDLDDIRENQHNL 454

Query: 481 LRPLRMSFILDKTGLARLEADITWR 505
             PL +    D        A   W+
Sbjct: 455 SIPLYVQAQTDTEVHDIEHAIEEWK 479


>gi|300741622|ref|ZP_07071643.1| type I restriction-modification system, M subunit [Rothia
           dentocariosa M567]
 gi|300380807|gb|EFJ77369.1| type I restriction-modification system, M subunit [Rothia
           dentocariosa M567]
          Length = 557

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/530 (21%), Positives = 201/530 (37%), Gaps = 71/530 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-- 63
              A L   IW+ A DL G     DF + +L     R +   L    +   ++  A G  
Sbjct: 40  NERAELHRTIWRIANDLRGSVDGWDFKQYVLGMMFYRFISENLTEYITYEEQEAGAKGFD 99

Query: 64  -------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
                    ++D+   +      F   S+   +      T  NL   +            
Sbjct: 100 YAQINDLEIDLDVVQEIVKERGFFLYPSQLFENVYAQARTDENLNETLEKVFQAVEESTK 159

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPD--TVPDRVMSNI 158
                 N   +F+DFD +S        ++   LYK+    + + L        +    + 
Sbjct: 160 NTQSERNFSGLFDDFDVNSKKLGSSVQDRNKTLYKLMGAVAEMNLETSYRQSANDTFGDA 219

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  + +   +   ++ TP++V  L   +  D    +          +YDP CG+G 
Sbjct: 220 YEYLMGMYAANAGKSGGEYYTPQEVSELLARIATDGKTQVG--------RVYDPACGSGS 271

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +                GQE  P T+ +C   ML+  +  D       +I  
Sbjct: 272 LLLKFAKLLGAENVKE-------FLGQESNPTTYNLCRINMLLHNIPFDK-----FDIAH 319

Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL        + F   +SNPP+  KWE D + +          R+ P   L   +   
Sbjct: 320 GDTLIAPQHRHLEPFEAIVSNPPYSTKWEGDSNPLLINDD-----RYAPAGVLAPKAKAD 374

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F MH+ + L       G AAIV     L+ G A   E +IR +LL N+ ++A++ LP 
Sbjct: 375 LAFTMHMLSSL----AEDGTAAIVEFPGVLYRGGA---ERKIREYLLRNNYVDAVIQLPP 427

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           DLFF T I T + +L  +K   R   V  ++A+  +  + N+ +    + +  R +I   
Sbjct: 428 DLFFGTAIGTCIIVL--KKGTRRDTSVLFVDASAEFERVGNKNR----LLESHREKIYQA 481

Query: 456 YVSRENGK-FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI 502
             +REN + F++++   T       + V   +      ++  +  L A I
Sbjct: 482 VRTRENVQYFAQLVKSETLLEQDANLSVSSWVEAEDTREQINIGELNAQI 531


>gi|333030656|ref|ZP_08458717.1| type I restriction-modification system, M subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741253|gb|EGJ71735.1| type I restriction-modification system, M subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 515

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 120/539 (22%), Positives = 208/539 (38%), Gaps = 66/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  +     L   IWK A D+ G     DF + +L     R +         A  + + 
Sbjct: 1   MT-SSNQRKELQAKIWKIANDVRGSVDGWDFKQFVLGTLFYRFISENFSNYMEAGDDSFH 59

Query: 61  AFGGSNIDL-----ESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFS---- 108
                +  +     +  +K  GY  Y +  +   + +   +TN   +L++   +      
Sbjct: 60  YASLPDDIITPDLKDDAIKTKGYFIYPSQLFKNVAHTANTNTNLNTDLKAIFDAIESSAL 119

Query: 109 -----DNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                   K +F DFD +ST        K   L  + K    ++    +     +  + Y
Sbjct: 120 GYASEKEIKGLFADFDTTSTRLGNTVENKNKRLAAVLKGVEELDFGDFEENQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQQVSKLIAQLAMHKQTSVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +              GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDNHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNIALG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL    F   + F   +SNPP+  KW  D D            RF P   L   S    
Sbjct: 281 DTLINPQFGDDKPFDAIVSNPPYSVKWIGDDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 336 AFVLHALSYL----SSRGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K +    K Q I+A+        +      + D   ++I+ I+
Sbjct: 389 LFYGTSIAVNILVLSKHKADT---KTQFIDAS--GEDFFKKVTNNNELTDAHIKKIMQIF 443

Query: 457 VSRENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPL 510
            S+EN K+ ++ +D            V   +      +K  +  L  ++  T +K+  L
Sbjct: 444 DSKENVKYIAQSIDNTQIAKNDYNLSVSSYVEFEDTREKVDIVELNKELAVTVKKIDQL 502


>gi|283477075|emb|CAY72970.1| type I restriction-modification system DNA methylase [Erwinia
           pyrifoliae DSM 12163]
          Length = 566

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 101/523 (19%), Positives = 181/523 (34%), Gaps = 93/523 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L +  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLF 60

Query: 56  -------------REKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGST--- 94
                        RE+Y +       ++  ++V  Y      F+        TL S    
Sbjct: 61  RQVGNADNTYAIPREEYDSEAEYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAAL 120

Query: 95  ----------NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKI----CK 138
                     N +      ++   DNA    E  +      + R+    L  ++      
Sbjct: 121 PVGSVLGRDENGKELKLRSVSLLIDNALDKIEQSNGKLKGVLNRIAHYQLGNEVLIGLIN 180

Query: 139 NFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            FS                    ++ ++YE+ + +F     +    + TP+ +V L   +
Sbjct: 181 TFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEM 240

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----PILVPHGQ 245
           L                 +YDP  G+GGF   +   +       +         +V +GQ
Sbjct: 241 LQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQ 289

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    M IR ++ D         +   TL  D     R  + ++NPPF  K 
Sbjct: 290 ESNPTTWRLAAMNMAIRGIDFD------FGTKNADTLLDDQHPDLRADFVMANPPFNMKE 343

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K     R+  G P   + +  ++ H+ + L       G  A++L++  +
Sbjct: 344 WWSA-------KLENDVRWQYGTPPQGNANFAWMQHMIHHLAPQ----GSMALLLANGSM 392

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-----TEERRG 420
                 + E EIRR L+E DL+E +VALP  LF  T I   +W+L+  K        R+G
Sbjct: 393 --SSNTNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRKG 450

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +V  I+A         + +  R    +   +I   + + +  K
Sbjct: 451 EVLFIDARQTGFM---KDRVLRDFTTEDIAKIAATFHAWQTDK 490


>gi|308063356|gb|ADO05243.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Sat464]
          Length = 529

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 211/565 (37%), Gaps = 77/565 (13%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  --EPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
             E  +      Y        +   E  +K  G+ F   S    + L +  T  +L   +
Sbjct: 61  NKEERKRDPSFDYAKLSDEEAEGAKEGLIKEKGF-FIPPSALFCNVLKNARTNEDLNVTL 119

Query: 105 ASF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPD 148
            +               +N K +F D D +S     +   +   L KI +    ++L   
Sbjct: 120 QNIFNEIEKSSLGFESEENVKGLFADLDVNSNKLGSSHKNRVEKLAKILQAIGDMQLGDY 179

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K       
Sbjct: 180 QKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK------- 232

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      + D              GQE+   T+ +C   M +  +   
Sbjct: 233 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYS 285

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL        + F   +SNPP+  KW  + + +    +     RF P
Sbjct: 286 K-----FHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPILINDE-----RFSP 335

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +   + F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ 
Sbjct: 336 AGVLAPKNAADLAFTMHMLSYL----SNSGTCAIVEFPGVLYRGNA---EAKIREHLVKE 388

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  +
Sbjct: 389 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKL 441

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +  R +IL  Y  R+  K FS + +          +    R     D   +  ++A   
Sbjct: 442 KEHNREKILQTYTERKTIKHFSALANMEKIKENDYNLSVN-RFVEQEDTKEIIDIKALNG 500

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYP 528
                   QS   + L+ +++++  
Sbjct: 501 EISQIVEKQSALRNSLESIIKELEE 525


>gi|208434761|ref|YP_002266427.1| type I restriction enzyme M protein [Helicobacter pylori G27]
 gi|208432690|gb|ACI27561.1| type I restriction enzyme M protein [Helicobacter pylori G27]
          Length = 531

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/525 (22%), Positives = 205/525 (39%), Gaps = 66/525 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L N IWK A +L G     DF + +L     R +   +    +    K         
Sbjct: 22  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTDYINKEERKRDPSFDYAL 81

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           L+   +    E  ++  G+ F   S    + L +  +  +L   + +             
Sbjct: 82  LSDEEAERAREHLIEEKGF-FIPPSALFCNALKNAPSNEDLNVTLQNIFTEIEKSSLGTP 140

Query: 108 -SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
             +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L
Sbjct: 141 SEENVKGLFADLDVNSNKLGSSHKIRVEKLTKILQAIGGMQLGDYLKSGIDVFGDAYEYL 200

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L  
Sbjct: 201 MAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQ 252

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + D              GQE+   T+ +C   M +  +          +I  G TL
Sbjct: 253 FSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINY-----TKFHIALGDTL 301

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   +SNPP+  KW  D   + K+    E  R    L   +   + F MH
Sbjct: 302 LDPKHEDDEPFDAIVSNPPYSTKWVGDNSPLLKD---DERFRKAGVLAPKNAADLAFTMH 358

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LFF T
Sbjct: 359 MLSYL----SNQGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFGT 411

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IAT + +L   K ++       I+A+  +        K+  +    R +IL  Y+ R+ 
Sbjct: 412 SIATCILVLKKNKKDDT---TLFIDASKEFVK----EGKKNKLKAHNREKILQTYIERKE 464

Query: 462 GK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            K F  + +            V R +      +   +  L ++I+
Sbjct: 465 VKHFCALANIEKIKENDYNLSVNRYVEQEDTKEAIDIKALNSEIS 509


>gi|325953724|ref|YP_004237384.1| type I restriction-modification system, M subunit [Weeksella virosa
           DSM 16922]
 gi|323436342|gb|ADX66806.1| type I restriction-modification system, M subunit [Weeksella virosa
           DSM 16922]
          Length = 515

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/530 (21%), Positives = 203/530 (38%), Gaps = 64/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT        L   IW+ A ++ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIAQRQELQAKIWRIANEVRGSVDGRDFKQFVLGTLFYRFISENFTNYIEGGDESIN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       +++         F   S+  ++   + +T  NL + + +          
Sbjct: 60  YAALQDDVITPEIKEDAVKTKGYFIYPSQLFINIAKNAHTNPNLNTDLKAIFDAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                 + K +F DFD +ST        K   L K+ K    ++  + +     +  + Y
Sbjct: 120 GYPSEPDIKGLFADFDTTSTRLGNTVEAKNNTLAKVLKGIEILDFGNFEDNQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   ++ TP+ V  L   L +    ++ K        +YDP CG+G  
Sbjct: 180 EFLIGNYAANAGKSGGEYFTPQTVSKLIAQLAMHKQTSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +             +GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDNHIIDEG------FYGQEVNHTTYNLARMNMFLHNINYDK-----FNITLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL +  F  ++ F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 281 NTLLQPEFGDEKPFDAIVSNPPYALKWIGSDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 336 AFILHALHYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  KT+    K Q I+A+        +     ++ D    +I+  +
Sbjct: 389 LFYGTSIAVNILVLSKHKTDT---KTQFIDAS--GEEFYKKVTNNNVLEDQHIERIMQHF 443

Query: 457 VSRENGKFSRM-LDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            ++E+     + +D            V   +      +   +  L A+I 
Sbjct: 444 DTKEDTAHVAISVDNSIIAENDYNLSVSSYVEAKDTREVIDIVALNAEIA 493


>gi|116495552|ref|YP_807286.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei ATCC 334]
 gi|116105702|gb|ABJ70844.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei ATCC 334]
          Length = 532

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 216/562 (38%), Gaps = 70/562 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M + T  + +L   +W +A+ L      +++   +L     + L   +    S   E+  
Sbjct: 1   MAQMT--SQTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 60  -----------LAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                       A+   ++  +    V+   GY       ++       +    LE    
Sbjct: 59  TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQLEDLSQ 118

Query: 106 SFSDNAK------AIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           SF D  +       +FED D  S        ++  ++  + K  S ++L      + ++ 
Sbjct: 119 SFRDIEQSSEFFSGLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQN-TNDILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F S+  + A +F TP+ V  L T + +   + +         T+YDPT G+
Sbjct: 178 DAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDPTMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +  +  S       +   GQEL   T+ +    M++  +        ++++
Sbjct: 232 GSLLLNARRYSNERLS-------INYFGQELNTSTYNLARMNMILHGV-----PINNQHL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISD 333
               TL +D    +   F   + NPP+   W+  K             RF   GL   S 
Sbjct: 280 HNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSKGTEND-------PRFVSYGLAPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G   IVL    LF G A   E  IR+ LLEN  I+ ++ L
Sbjct: 333 ADFAFLLHGYYHLK----DTGVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVIGL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T+I T + +L   +T      V  I+A+  +   +N    +  + DD  ++IL
Sbjct: 386 PANIFFNTSIPTTVTVLKKSRTTR---DVLFIDASKEFEKAKN----QNHLTDDNIQKIL 438

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           +  ++R++  K++ +  +         +  P  +     +  +  ++     +K      
Sbjct: 439 ETCINRKDVDKYAHLASFDEIKENDFNLNIPRYVDTTEPEKPVDVVKVVADIKKNDEEIA 498

Query: 513 SFWLDILKPMMQQIYPYGWAES 534
               ++ K     +     A  
Sbjct: 499 RLSSELAKNFDDLVANNDEAAK 520


>gi|317182160|dbj|BAJ59944.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 529

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/566 (21%), Positives = 211/566 (37%), Gaps = 78/566 (13%)

Query: 1   MTEFTGSAA--------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQANKSSSLERNELHNTIWKMANELRGSVDGWDFKQYVLGILFYRYISENMAYYI 60

Query: 53  SAVREK------YLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
           +    +      Y +      +  +  + V    F   S    + L +     +L   + 
Sbjct: 61  NKQEREHDPNFDYASLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPNNGDLNVTLQ 120

Query: 106 SF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT 149
           +               +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK 286

Query: 269 RRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +    +     RF   
Sbjct: 287 -----FHIVHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPILINDE-----RFSKA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
           +  R +IL  Y  R+  K FS +              V R +      +   +  L+ +I
Sbjct: 443 EHNREKILQTYTERKIIKHFSALASIEKIKENDYNLSVNRYVEQEDTKEIIDIKALQFEI 502

Query: 503 TW--RKLSPLHQSFWLDILKPMMQQI 526
           +   +K S L  S    I +    Q 
Sbjct: 503 SQIVQKQSALRNSLDRIIKELEEGQN 528


>gi|157151457|ref|YP_001449876.1| type I restriction-modification system, M subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076251|gb|ABV10934.1| type I restriction-modification system, M subunit [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 535

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 124/570 (21%), Positives = 217/570 (38%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   L    +   E+    
Sbjct: 4   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVAETMEEETES 63

Query: 59  ----------YLAFGGSNIDL-----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                     Y     S  DL     +    V       T+       G+    +  + +
Sbjct: 64  LDEALALYRTYYEDPDSQEDLITVITDELNYVIKPDLTFTALVDRVNEGTFQLEDLAQGF 123

Query: 104 --IASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++  L+  + K  + +E+        ++ + 
Sbjct: 124 RDIEQCDELYENLFEDIDLYSKKLGATPQKQNQLVAAVMKELAVLEVAGHA--GDMLGDA 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+G 
Sbjct: 182 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------EQGFTLYDATMGSGS 235

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +   GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 236 LLLNAKKYSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 283

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW      +     +     FG  L   S    
Sbjct: 284 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN----DPRFSPFGK-LAPQSKADF 338

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 339 AFLLHGYYHLKQ---DKGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 392

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 393 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILEAY 445

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF+ +  Y         +  P  +    ++      E      + +   +S  
Sbjct: 446 KSREEMDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINETNKAIESQT 505

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +L+ + Q       A++ +K+ +K  + 
Sbjct: 506 ASLLEMLNQLHGTTPEADAELKQFLKEFKG 535


>gi|167041819|gb|ABZ06560.1| putative N-6 DNA methylase [uncultured marine microorganism
           HF4000_097M14]
          Length = 572

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/582 (20%), Positives = 227/582 (39%), Gaps = 52/582 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   +   L +F+W+ A+ L G+    +F   I     L+R+  + +  R  V  K+L
Sbjct: 1   MSEK-LTLQQLESFLWETADILRGNMDAAEFKDYIFATMFLKRISDSFDDEREKVINKFL 59

Query: 61  AFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKA 113
               +    E          +F+   +   + L +         N   + I   + + + 
Sbjct: 60  KKKKNQKQAEKLANDPDQYDTFFIPKKAHWNHLKNLKHDVGAVLNKATAAIEDQNPSLEG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +    DF+           L  +  +FS   L + D     +M + YE+LI+ F     +
Sbjct: 120 VLVSIDFN--KKDKLSDKKLRDLLSHFSKHRLRNSDFEKPDLMGSAYEYLIKMFADSAGK 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP +VV+L   L+           P     + DPTCG+GG L  + N++ + G 
Sbjct: 178 KGGEFYTPSEVVNLLVRLI----------KPKAKMRVCDPTCGSGGMLIQSRNYLIEHGE 227

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
           +   P  +   GQE+   T A+C   M +  +        + +I++G T+          
Sbjct: 228 N---PRNISLFGQEMNQGTWAICKINMFLHSV-------FNADIKKGDTIRDPKHLRSGE 277

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   ++NPPF           ++E  N   GRF  G P    G + F+ H+   L  
Sbjct: 278 LMTFDRVIANPPFSLAKWG-----KEEADNDSFGRFPYGTPPKDTGDLAFVQHMIASL-- 330

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N  G   +V+    LF    G+ E EIR+ +L+NDL+EA++ LP  LF+ T I   + 
Sbjct: 331 --NAYGVMGVVVPHGVLFR---GASEMEIRKGILDNDLLEAVIGLPPKLFYGTGIPAAML 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           I++ +K+++R+ K+  IN+   +   +N+ +    + +   ++IL  + + E+ K +S++
Sbjct: 386 IINKKKSKDRKNKIIFINSDLEFEEGKNQNR----LKEQDIKKILSKFNNFEDTKRYSKV 441

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +           +                          +S +   +  + LK M     
Sbjct: 442 VSMDKIKENEYNLNIRRYADTSPPPEKFDTYALLNGGIPISEIEDEYIQETLKGMDVSCV 501

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
                +++ +   +    + +K                  D 
Sbjct: 502 FNKKDKNYYEFKSEIKSKEEIKDFLKTKNQKITAQFEYWWDK 543


>gi|259907263|ref|YP_002647619.1| Type I restriction modification DNA modification domain protein
           [Erwinia pyrifoliae Ep1/96]
 gi|224962885|emb|CAX54366.1| Type I restriction modification DNA modification domain protein
           [Erwinia pyrifoliae Ep1/96]
          Length = 568

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/523 (19%), Positives = 181/523 (34%), Gaps = 93/523 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L +  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLF 60

Query: 56  -------------REKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGST--- 94
                        RE+Y +       ++  ++V  Y      F+        TL S    
Sbjct: 61  RQVGNADNTYAIPREEYDSEAEYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAAL 120

Query: 95  ----------NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKI----CK 138
                     N +      ++   DNA    E  +      + R+    L  ++      
Sbjct: 121 PVGSVLGRDENGKELKLRSVSLLIDNALDKIEQSNGKLKGVLNRIAHYQLGNEVLIGLIN 180

Query: 139 NFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            FS                    ++ ++YE+ + +F     +    + TP+ +V L   +
Sbjct: 181 TFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEM 240

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----PILVPHGQ 245
           L                 +YDP  G+GGF   +   +       +         +V +GQ
Sbjct: 241 LQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQ 289

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    M IR ++ D         +   TL  D     R  + ++NPPF  K 
Sbjct: 290 ESNPTTWRLAAMNMAIRGIDFD------FGTKNADTLLDDQHPDLRADFVMANPPFNMKE 343

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K     R+  G P   + +  ++ H+ + L       G  A++L++  +
Sbjct: 344 WWSA-------KLENDVRWQYGTPPQGNANFAWMQHMIHHLAPQ----GSMALLLANGSM 392

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-----TEERRG 420
                 + E EIRR L+E DL+E +VALP  LF  T I   +W+L+  K        R+G
Sbjct: 393 --SSNTNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRKG 450

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +V  I+A         + +  R    +   +I   + + +  K
Sbjct: 451 EVLFIDARQTGFM---KDRVLRDFTTEDIAKIAATFHAWQTDK 490


>gi|298736553|ref|YP_003729079.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|298355743|emb|CBI66615.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 523

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/551 (21%), Positives = 212/551 (38%), Gaps = 71/551 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVREKYLA 61
              L N IWK A +L G     DF + +L     R +   +      E  +      Y  
Sbjct: 14  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKHDPSFDYAK 73

Query: 62  FGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASF------------- 107
                 +      +    F+   S    + L +     +L   + +              
Sbjct: 74  LSDEEAERAREELIEEKGFFIPPSALFCNALKNAPNNEDLNVTLQNIFNEIEKSSLGAPS 133

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
            +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L+
Sbjct: 134 EENVKGLFADLDVNSNKLGSSHKIRVEKLTKILEAIGGMQLGDYQQSGIDVFGDAYEYLM 193

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 194 AMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQF 245

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D              GQE+   T+ +C   M +  +          +I  G TL 
Sbjct: 246 SKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIALGDTLL 294

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                  + F   +SNPP+  KW  D + +    +     RF P   L   +   + F M
Sbjct: 295 DPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLINDE-----RFSPAGVLAPKNAADLAFTM 349

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LFF 
Sbjct: 350 HMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFG 402

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL  Y+ R+
Sbjct: 403 TSIATCILVLKKNKKDDT---TLFIDASKEFVK----EGKKNKLKERNREKILQTYIERK 455

Query: 461 NGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             K FS + +            V R +      +   +  L ++I+        QS    
Sbjct: 456 EVKHFSSLANIEKIKENDYNLSVNRYVEQEDTKEIIDIKALNSEISQI---VEKQSALRS 512

Query: 518 ILKPMMQQIYP 528
            L+ +++++  
Sbjct: 513 SLESIIKELEA 523


>gi|289450588|ref|YP_003474820.1| putative type I restriction-modification system, M subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185135|gb|ADC91560.1| putative type I restriction-modification system, M subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 501

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/527 (19%), Positives = 200/527 (37%), Gaps = 60/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       IW  A  LWG    +++  VI+    L+ +  A +     +  +  
Sbjct: 1   MADKSKATLGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLIAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    +    F+   +     +             +     I + +   K 
Sbjct: 59  ---GDGFENDPDAYLEDNVFFVPEDARWEKIAKAAHEPEIGKVIDEAMRAIEADNKKLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L  +   F+ +++        V+   YE+ I +F  +  +G
Sbjct: 116 VLPKNYASPDLDKK----ILGNVVDLFTNMDMSDTEGNRDVLGRTYEYCIAQFAEKEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V+   A+L           P     +YD  CG+GG    +   +     +
Sbjct: 172 GGEFYTPSSIVNTLVAIL----------KPYANCRVYDCCCGSGGMFVQSAKFIQAHSGN 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P+T  + +  + IR L++D             T + DL    +  
Sbjct: 222 RG---SISIYGQEANPDTWKMAIMNLTIRGLDAD------LGAYHADTFTNDLHPTLKAD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +D  +         R+  G+P  S+ +  ++ H+ + L       
Sbjct: 273 FILANPPFNYNPWGQEDLKDDV-------RWKYGVPPASNANYAWIQHMIHHL----APS 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L       GE EIR+ ++E+DLIE I+A+P  LF+   I   LW ++  
Sbjct: 322 GKIGLVLANGAL--SSQNGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFITKG 379

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K ++ +     I+A  +   +    +K R   ++  +++ D   + +NG       F  +
Sbjct: 380 KKQKGKT--VFIDARKMGHMV---DRKHRDFTEEDIQKLADTIEAFQNGTLEDEKGFCSV 434

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
              +    +   VL P R   I ++        +   R  S L   F
Sbjct: 435 ATIQDIAKQDY-VLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSDMF 480


>gi|30248402|ref|NP_840472.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Nitrosomonas europaea ATCC 19718]
 gi|30138288|emb|CAD84296.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Nitrosomonas europaea ATCC 19718]
          Length = 571

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 113/576 (19%), Positives = 197/576 (34%), Gaps = 105/576 (18%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-FGGSNI 67
             L   +W  A+ L  +     +  V+L    L+ +  A E  +  +RE++        +
Sbjct: 10  NDLEKKLWTAADKLRSNLDAAVYKHVVLGLIFLKYVSDAFEERQRELREQFTNPQHDYYM 69

Query: 68  DLESF--------------------VKVAGYSFYNTSEYSLSTL---------------G 92
           D E +                           F+   E    TL                
Sbjct: 70  DPEEYGGAGTPEYEDNIAAELEVRDYYTEKNVFWVPVEARWQTLRDCAQLPPKAALPWNK 129

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSGIEL 145
                      +    DNA    E  +       +   AR++  +  L ++   FS  + 
Sbjct: 130 PGKDEPEEMRSVGWLIDNAMEAIERENIRLKNVLNKDFARVQLDSSKLGELIALFSDTDF 189

Query: 146 HPDTV--------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
              T            ++ ++YE+ + +F     +    + TP+ +V L   +L      
Sbjct: 190 AAKTYKGQPLSLQSRDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEMLQPFKG- 248

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVC 255
                      +YDP  G+GGF   +   +   G    +     +  +GQE  P T  + 
Sbjct: 249 ----------RVYDPAMGSGGFFVQSEEFIGQHGGKAANGKSGQISVYGQESNPTTWRLA 298

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEK 314
              M IR +      D +       TL  DL    R  + ++NPPF  K W  +K A + 
Sbjct: 299 AMNMAIRGI------DFNFGSGPADTLLNDLHPDLRADFVMANPPFNMKEWWNEKLAND- 351

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                   R+  G P   + +  +L H+   L       G  A++L++  +      + E
Sbjct: 352 -------PRWIAGTPPQGNANFAWLQHMLWHL----APTGSMALLLANGSM--SSNTNSE 398

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQLI 425
            EIR+ L E+D +E +VALP  LF  T I   +W L+          +K  +RRG+   I
Sbjct: 399 GEIRKRLTEDDYVECMVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGEFLFI 458

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRI 478
           +A  +      + +  R    D  ++I D + + + G        F +            
Sbjct: 459 DARQMGYM---KDRVLRDFTVDDIQKIADTFHAWQQGDGYEDVPGFCKSASLEEVRKHE- 514

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            VL P R     ++       AD   R  + L + F
Sbjct: 515 HVLTPGRYVGTAEQEEDGEPFADKMQRLTAQLAEQF 550


>gi|296100300|ref|YP_003620470.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154]
 gi|295831617|gb|ADG39501.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154]
          Length = 530

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/524 (20%), Positives = 190/524 (36%), Gaps = 69/524 (13%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE- 70
              IWK   +  G  + +++   I      + L    +                  + E 
Sbjct: 8   QALIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQTWLDQQLRGETWASVWEQNPEK 67

Query: 71  --SFVKVAGYSFYNTSEYSLSTLGS--------TNTRNNLESYIASFSDNAK----AIFE 116
             +F++          E       +        TN  + L  +       AK     IF+
Sbjct: 68  AAAFMQTKLGYVIQPGELFSDWQAAINVDQFNITNVADALVHFNQGIQQGAKATFEGIFD 127

Query: 117 DFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D D +S+        +   L         IEL  D     V+ ++YE+LI  F +     
Sbjct: 128 DMDLTSSRLGSNTQTRTKTLMDWISLIDQIELDEDA---DVLGDLYEYLIGMFAANSGAK 184

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  V  +   +L    + +         +LYDP  G+G  L    +++ + G  
Sbjct: 185 AGEFYTPHQVSDIMARILTAGREDM------PTYSLYDPAMGSGSLLLTTASYMQNDG-- 236

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
             +   +  +GQE+   T+ +    +++  +E +       +I    TLS D   G    
Sbjct: 237 --VRGAIKYYGQEVITTTYNLGRINLMMHGVEYNDI-----HIHNADTLSSDWPDGVQSG 289

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               + F   ++NPP+  KW+ D           +  RF  G+   S     FL H    
Sbjct: 290 VDSPRMFDAVMANPPYSLKWDNDN--------REDDPRFKSGIAPKSKADFAFLQHGLYH 341

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR AIVL    LF G A   E  IR+ LLEN  I A++ LP  +F  T I T
Sbjct: 342 LK----QDGRMAIVLPHGVLFRGAA---EGRIRQALLENRNISAVIGLPEKIFTNTGIPT 394

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + IL   +T      V  I+A+  +   +N       +  +    I++ ++ RE+  K+
Sbjct: 395 IIMILEKNRT---TDDVLFIDASKGFEKQKN----NNKLRQEDVDLIVETFLKREDVAKY 447

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK 506
           + +  +         + + R +      +   L  +  D+    
Sbjct: 448 AHVASFEEIKENDFNLNIPRYVDTFEEEEAVDLVAVSQDLVDVN 491


>gi|188527305|ref|YP_001909992.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188143545|gb|ACD47962.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 529

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/565 (21%), Positives = 211/565 (37%), Gaps = 77/565 (13%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  --EPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
             E  +      Y        +   E  ++  G+ F   S    + L +     +L   +
Sbjct: 61  NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGF-FIPPSALFCNVLKNAPHNEDLNVTL 119

Query: 105 ASF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPD 148
            +               +N K +F D D +S     +   +   L KI +   G++L   
Sbjct: 120 QNIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDY 179

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K       
Sbjct: 180 QKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK------- 232

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      + D              GQE+   T+ +C   M +  +   
Sbjct: 233 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCHINMFLHDINYS 285

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL        + F   +SNPP+  KW  + + +    +     RF P
Sbjct: 286 K-----FHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPILINDE-----RFSP 335

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +   + F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ 
Sbjct: 336 AGVLAPKNAADLAFTMHMLSYL----SNSGTCAIVEFPGVLYRGNA---EAKIREHLVKE 388

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  +
Sbjct: 389 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKL 441

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +  R +IL  Y  R+  K FS + +          +    R     D   +  ++A   
Sbjct: 442 KEHNREKILQTYTERKTIKHFSALANMEKIKENDYNLSVN-RFVEQEDTKEIIDIKALNG 500

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYP 528
                   QS   + L+ +++++  
Sbjct: 501 EISQIVEKQSALRNSLESIIKELEE 525


>gi|332364614|gb|EGJ42383.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1059]
          Length = 533

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/570 (21%), Positives = 214/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   L    +   E+    
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKLLFFVAETMEEETES 61

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLE 101
                     Y     S  DL S +K              + +   N             
Sbjct: 62  LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPDLTFTALVDRVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        +   ++  + K  + +++        ++ + 
Sbjct: 122 RDIEQCDELYENLFEDIDLYSKKLGATPQKANSVVGAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW      +    ++     FG  L   S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFL----QDPRFSPFGK-LAPQSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDTHIEKILEAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF+ +  Y         +  P  +    ++      E        +   +S  
Sbjct: 444 KSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAIESQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +L+ + Q       A++ +K+ +K  + 
Sbjct: 504 ASLLEMLNQLHGTTPEADAELKQFLKEFKG 533


>gi|322392309|ref|ZP_08065770.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus peroris ATCC 700780]
 gi|321144844|gb|EFX40244.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus peroris ATCC 700780]
          Length = 533

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 119/570 (20%), Positives = 213/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   +    +   E+    
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGTDS 61

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLE 101
                     Y     ++ DL S +               + +   N             
Sbjct: 62  LEDALEVYRNYYEDAETHEDLVSVMNDELNYIIKPDLTFTALVARVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    D  + +FED D  S        ++   +  + K  + +++        ++ + 
Sbjct: 122 RDIEQSDDLYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +                 T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAF------LGRENQEGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW         + +    G+  P     S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASS-GFMADPRFSPFGKLAP----QSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILEAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF  +  Y         +  P  +    ++      +      + +   +S  
Sbjct: 444 KSREEIDKFVHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINETNKAIESQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +L+ + Q       A++ +KE +K+ + 
Sbjct: 504 ASLLEMLGQLHGTTPEADAELKEFLKNFKG 533


>gi|313896491|ref|ZP_07830042.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974915|gb|EFR40379.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 501

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 197/497 (39%), Gaps = 45/497 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E   + + L +++W +A+ L G      + + I P    +RL    E   +   ++    
Sbjct: 2   ENKITLSELESYLWGSADILRGKMDAGSYKQYIFPLLFFKRLNDVYEEETAKAVKENGEE 61

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                ++ S+    G+ + +          +        +   + S+    IF D  +++
Sbjct: 62  AAEWDEIHSYRIPDGFHWDDVRNVPSDVGKA--IVTAFRAMEKANSEKLTGIFGDGTWTN 119

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    LL  + ++FS   L  +  P+  +   YE+LI++F  +    A++F T R 
Sbjct: 120 K-NRLPD-RLLKDLMEHFSKYTLSLENCPEDELGQGYEYLIKQFADDSGHTAQEFYTNRT 177

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T +L           P    ++YDPTCG+ G L  A+ H+   G   +    +  
Sbjct: 178 VVHLMTEIL----------QPKSGESIYDPTCGSAGMLISAIAHLKRSGKEWRN---VSL 224

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
            GQE+   + A+    + +  +E          I  G TL+   FT     ++F   ++N
Sbjct: 225 FGQEINLLSSAIGRMNLFLHGIED-------FEIVNGDTLANPAFTKNGKLRQFDMIVAN 277

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+               +  + GR   G+P  +     F  H+   ++   +  GR AI
Sbjct: 278 PPYSVNQWSRAA-----FEFDKYGRNILGVPPQARADYAFFQHILVSMK---DKTGRCAI 329

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E  +R  L+ +D ++ ++ L  +LF+ + +   + I    K +  
Sbjct: 330 LFPHGVLFRNE----ERAMREKLVHSDWVDCVIGLGANLFYNSPMEACIVICRTEKPDTH 385

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRR 477
           +  V  INA +  T        R  +      +I   Y + ++ + F++ +  R      
Sbjct: 386 KNHVLFINALNEVTR----KNARSYLESQHIERISKAYNTYKSEEGFAKKVSIRDIEKND 441

Query: 478 IKVLRPLRMSFILDKTG 494
             +  PL +   +++T 
Sbjct: 442 FSLNIPLYVQVTMEETK 458


>gi|124008339|ref|ZP_01693034.1| type I restriction-modification system M subunit [Microscilla
           marina ATCC 23134]
 gi|123986128|gb|EAY25964.1| type I restriction-modification system M subunit [Microscilla
           marina ATCC 23134]
          Length = 524

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/541 (21%), Positives = 220/541 (40%), Gaps = 69/541 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T    +L  ++W +A+ L G    +DF   I     L+R     E   +   +K  
Sbjct: 1   MSKLT--LETLEGWLWDSADILRGSTDSSDFKNYIFGLLFLKRSNDVFEEEVAQKMDK-E 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +    + + E + K+   + +         +G     +     I   + + + +     F
Sbjct: 58  SLSREDAEEEVYFKMPPEARWQYLIEQTENIGIA--LDKAFGAIERENQSLEGVMTAIKF 115

Query: 121 SSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 +    +L ++ ++F+   L + D     ++ + YE+LI++F  +  +   +F T
Sbjct: 116 GDK--EVLSNEVLQRLLRHFNKHSLQNKDLESGDLLGDAYEYLIKQFADDAGKKGGEFYT 173

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV+L   L+           P     +YDPTCG+GG L ++  +VA+     K   +
Sbjct: 174 PRGVVNLIVRLI----------KPQPGHRVYDPTCGSGGMLIESARYVANQPEGIKGGVV 223

Query: 240 -LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FH 293
            +   GQE    T A+    M++   ES        ++Q+G TL+       +     F 
Sbjct: 224 DIALFGQEKNLSTWAIGKLNMILHNFES-------ADLQKGDTLTNPRHADAQKGLQVFD 276

Query: 294 YCLSNPPFGKKWEK------------DKDAVEKEHK------------NGELGRFGPGLP 329
             ++NPPF                  D+D      K            +   GR   G+P
Sbjct: 277 RVIANPPFSMNGWWTPAENAAEEENNDQDRTPDAKKKKKKTPNYAKEVSDPFGRLVYGVP 336

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 + FL H+   L       G+A +VL    LF G +   E +IR+ LL+ DL+E 
Sbjct: 337 PRGYADLAFLQHMLASLRQ----DGKAGVVLPHGTLFRGGS---EGKIRQALLQADLVEG 389

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV LP+ LF+ T I   +W+L+  K   ++G+V ++ A+  +     EGKK+  + D   
Sbjct: 390 IVGLPSALFYNTGIPAAIWLLNKDKNPAQKGRVAIVEASRDY----QEGKKQNQLLDTHI 445

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK 506
            +I+  Y    +  K+ R++           + + R +  S    +  +  ++  I   +
Sbjct: 446 DKIVKAYEVLADVDKYMRVVPLEEIAENDYNLNISRYVDTSEPEPEVDIDEVKQRIADIE 505

Query: 507 L 507
           +
Sbjct: 506 V 506


>gi|51598167|ref|YP_072358.1| type I site-specific deoxyribonuclease LldI chain hs... [Yersinia
           pseudotuberculosis IP 32953]
 gi|186897391|ref|YP_001874503.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51591449|emb|CAH23120.1| putative type I site-specific deoxyribonuclease LldI chain hs
           [Yersinia pseudotuberculosis IP 32953]
 gi|186700417|gb|ACC91046.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 507

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 109/545 (20%), Positives = 210/545 (38%), Gaps = 58/545 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+        +   +W   +   G      +   IL    L+ +    +      + +Y 
Sbjct: 1   MSNMIDQD-RINRVLWGVCDTFRGTISPDTYKDFILTMLFLKYISDVWQDHYDGYKAQYG 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----FSDNAKA 113
                  ++   E FV     SFY   +              L +   +      D +K+
Sbjct: 60  DEPELIEEMMKNERFVLPKDASFYALYKRRSEAGNGERIDVALHAIEEANGTKLKDGSKS 119

Query: 114 IFEDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGS 168
           +F++  F++     EK    +L ++ ++F+   + L P  V    V+ N YE+LI +F +
Sbjct: 120 VFQEISFNTNKLGDEKQKNLILKQLLEDFTHPELNLKPSRVGGLDVIGNAYEYLIGKFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A ++ TP +V  L  ALL           P    ++ DPTCG+   L      VA
Sbjct: 180 NSGQKAGEYYTPPEVSDLLAALL----------DPQPGESICDPTCGSASLLMKCGKWVA 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +             +GQE    T ++    M +   +       +  I+ G T+      
Sbjct: 230 EKYHSKNYE----LYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K      F    +NPPF  +     D  +      +  RF  GLP  + G   F++H+ 
Sbjct: 279 DKNANLMLFDVVTANPPFSLEKWGIDDVSD-----DQFSRFRRGLPPKTKGDYAFILHMI 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      GR  +V+    LF G +   E +IR+ L++ +L++A++ LP  LFF T I
Sbjct: 334 ETMKPKT---GRMGVVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFFGTGI 387

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + I    K ++    V  I+A+  +    N GK +  ++ +   +I+  Y   +N  
Sbjct: 388 PAAILIFKKSKVDD---NVLFIDASREF----NSGKNQNQLSTENIAKIVKTYRDGDNVE 440

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K++ +   +        +  P  +    ++T +  + A    ++L        +++ K +
Sbjct: 441 KYAYLASLQEIRDNDYNLNIPRYVDTFEEETEIDLMTARAERKQLQAQLADLEVEMTKYL 500

Query: 523 MQQIY 527
            +  Y
Sbjct: 501 RELGY 505


>gi|121610476|ref|YP_998283.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
 gi|121555116|gb|ABM59265.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 535

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 205/549 (37%), Gaps = 76/549 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKY 59
           MTE       L + +W  A+ L G     DF   +L F  LR L    E  TR  +   Y
Sbjct: 1   MTE--QDQKQLGSILWNIADRLRGAMNADDFRDYMLSFLFLRYLSDNYEAATRKELGCDY 58

Query: 60  LAFGGSNI-------------DLESFVKVAGYSFYNT--SEYSLSTLGSTN--------- 95
            A    +              D + F +      +     +Y   ++             
Sbjct: 59  PALESEDRRAPLAVWYEQNPSDTDDFERQMRSKTHYVIRPKYLWGSIAEMARTQDKDLLR 118

Query: 96  TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
           T     SYI   SF+     +F + + SS            K+C     I   L   +V 
Sbjct: 119 TLQESFSYIENESFASTFDGLFSEINLSSEKLGKSYTERNAKLCSIIQEIADGLTKFSVD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + + YE+LI +F +   + A +F TP+ +  + +A++              + ++ D
Sbjct: 179 KDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVALDSQNPAAGKKKHLNSVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I   +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGALLLNVRKQLGPNG-------IGRIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D    +        RF   ++NPPF  +W+            G+  R
Sbjct: 287 SEFEIFHGDTLINDWDMLRESNPAKMPRFDAVVANPPFSYRWDPTGAM-------GDDVR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR  LL
Sbjct: 340 FKNHGLAPKSAADFAFLLHGFHYLKQE----GVMAIILPHGVLFRGGA---EERIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA + +      GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINAAEHFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLE 499
            +  +   +I+D Y  R E  +++R +           + + R +  +   ++  LA + 
Sbjct: 446 RLLLEHIDKIIDTYRFRNEEERYARCVSMEEIEKNDYNLNISRYISTAQAEEEVDLAAVN 505

Query: 500 ADITWRKLS 508
           A +   +  
Sbjct: 506 ARLVDIEKE 514


>gi|229542810|ref|ZP_04431870.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229327230|gb|EEN92905.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 509

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 200/544 (36%), Gaps = 58/544 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +   + + +W+ A+   G    + +   IL    ++ L    +       ++Y 
Sbjct: 1   MVEQT-TQEKINSVLWQAADTFRGKIDSSTYKDYILTMLFIKYLSDTYKEKLEEYTKRYN 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                       E FV     +F                   LE      +   + +F +
Sbjct: 60  GDEQRIQRALSRERFVLDETSTFDYLYSKRNDPEIGEIINKALERIENENAGKLRGVFRN 119

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEG 173
            DF+S        E+  +L  + ++F+ + L P  + +  ++ N Y+++I  F S+  + 
Sbjct: 120 IDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFASDAGKK 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP +V  L   L+           P     +YDPTCG+G  L      V      
Sbjct: 180 GGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQVP----- 224

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                 +  +GQE    TH++ +  M +  ++          I+ G TL+  L       
Sbjct: 225 ---SKKVAIYGQERNGATHSLALMNMYLHGIDDAK-------IEWGDTLANPLHLEDGKL 274

Query: 291 -RFHYCLSNPPFGKKWEK--------DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            +F   ++NPPF                   + E       RF  G+P  S G   F+ H
Sbjct: 275 MKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGDYAFVQH 334

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L       GR A +L    LF    G+ E++IR+ ++E +L++A++ LP  LF+ T
Sbjct: 335 MLYSL----AENGRMATILPHGVLFR---GASEAKIRKQIIELNLLDAVIGLPEGLFYGT 387

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   + +    +T +    V  I+A+        +GK +  + +    +I++ Y  RE 
Sbjct: 388 GIPACIMVFRKDRTRK---DVLFIDAS--GEEHYEKGKNQNKLREQDIEKIVETYEKRET 442

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +           +    +     + K
Sbjct: 443 IDKYSYVATIDEIRENDYNLNIPRYVDTFEEEEPVDMEAVKENIANIKKELKEVEAQMEK 502

Query: 521 PMMQ 524
            + +
Sbjct: 503 YLKE 506


>gi|258517330|ref|YP_003193552.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781035|gb|ACV64929.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 527

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 197/546 (36%), Gaps = 55/546 (10%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--FG 63
            +   +   IW+ A    G     ++   ILP   ++ L  +       + +KY      
Sbjct: 3   TTRKDIEAAIWRGANTFRGAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKYNDPVRA 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              I+   F     + F    +   +          L             +F + DF+S 
Sbjct: 63  ERAINRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVFRNIDFNSE 122

Query: 124 I---ARLEKAGLLYKICKNFSGIELHPDTVP-------DRVMSNIYEHLIRRFGSEVSEG 173
                  +K   L ++ ++F  ++L P  +           + + YE++I  F  +  + 
Sbjct: 123 AMLGNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGEFARQAGKK 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  F TP +V  L   ++          +P +  T+YDPTCG+G  L             
Sbjct: 183 AGSFFTPSEVSELIARIV----------NPKISDTMYDPTCGSGSLLIRTGK--KAIEKE 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +     L  +GQE+   + ++    M +  +  D R     ++     L  D     +F 
Sbjct: 231 NGNIKTLALYGQEMNGSSWSMAKMNMFLHEI-MDARIAWGDSLANPMHLDPDG-NLMQFD 288

Query: 294 YCLSNPPFGKKWE-----------KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             ++N PF +                    + E    +  RF  G+P  S G   FL+H+
Sbjct: 289 VIVANMPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVPPASKGDWAFLLHM 348

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+     GGR A V     LF    G+ E  IR+ ++E +L++A++ LP +LF+ T 
Sbjct: 349 IASLK----SGGRIAAVAPHGVLFR---GASEGRIRQAVIERNLLDAVIGLPANLFYGTG 401

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIR---NEGKKRRIINDDQRRQILDIYVSR 459
           I   + +    +    R  V  I+A+           + K +  +       I+  Y +R
Sbjct: 402 IPACILVFKKNRN---RNDVLFIDASGKDEKGHLRYRKDKNQNRLETKHIEDIVKAYETR 458

Query: 460 -ENGKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW--RKLSPLHQSF 514
            +  K + +  LD        + + R +      D   +  ++ +I    ++L+ +    
Sbjct: 459 SDIIKLAHVATLDEIKANEYNLNIPRYVDTFEEEDLVNIEEVKNNIANIQKELAEVEAQM 518

Query: 515 WLDILK 520
              + +
Sbjct: 519 AEYLKE 524


>gi|289624201|ref|ZP_06457155.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330869549|gb|EGH04258.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 473

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 113/476 (23%), Positives = 179/476 (37%), Gaps = 66/476 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW  A D+ G     DF + +L     R +        +       
Sbjct: 1   MT-SAQQRADLQRQIWAIANDVRGAVDGWDFKQYVLGTLFYRFISENFVDYITGGDSSVD 59

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN---- 110
                + D       +  +K  GY F   S+   +     +T ++L + +    D     
Sbjct: 60  YAAMEDDDPLIAAAKDDAIKTKGY-FIAPSQLFSNVAAKASTNDSLNTDLKRIFDAIENS 118

Query: 111 ---------AKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                     K +F DFD +S        +K   L  + K  + +E    D     +  +
Sbjct: 119 PNGYASEQYIKGLFADFDTTSNRLGNTVADKNKRLADVLKGVNKLEFGSFDASHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQE+   T+ +    M +  +  D       +IQ
Sbjct: 231 SLLLQAKKHFDAHVIQDG------FFGQEVNHTTYNLARMNMFLHNINYDK-----FDIQ 279

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL    F   K F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 280 LGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDD-----RFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +LFF T IA  + +LS  K +      Q I+A+ L+    N      ++ +   R
Sbjct: 388 PNLFFGTTIAVNILVLSKHKLDTT---TQFIDASALFKKGTN----NNLLENAHIR 436


>gi|95929209|ref|ZP_01311953.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684]
 gi|95134707|gb|EAT16362.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684]
          Length = 550

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 178/509 (34%), Gaps = 83/509 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E      +L   +W  A+ L        +   +L    ++ +  A +  R  + E++ 
Sbjct: 1   MSEQEF-LQNLEKKLWNAADKLRSTLDAAQYKHAVLGLLFIKYVSDAFDIRRQELIEQFQ 59

Query: 61  AFGGSNI-DLESF------------------VKVAGYSFYNTSEYSLSTLGSTNTRN--- 98
                   D   F                         F+  +    + L          
Sbjct: 60  DENHDYYLDPADFASEVECQEEIAVELEVRDYYTEKNVFWVPALGRWANLQDNAKLPPGT 119

Query: 99  -----------NLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNF 140
                           +    D+A    E  +       + +  RL+     L ++    
Sbjct: 120 KIEIKNGKTTTYEMRSVGRLIDDALDAIEKDNPKLKRVLNKSYGRLQIDPAKLGELIDLI 179

Query: 141 SGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           + I   H       ++ ++YE+ + +F     +    F TP+ +V L   +L        
Sbjct: 180 ATIPFKHASLQAKDILGHVYEYFLGQFALAEGKKGGQFYTPKSIVSLIVEMLQPFSG--- 236

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    +YDP  G+GGF   +   + + G        +  +GQE    T  +    M
Sbjct: 237 --------RVYDPAMGSGGFFVQSEQFIKEHGGKLGN---VSIYGQEYNHTTWQLAAMNM 285

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +IR L      D +   +  +T + D     R  + ++NPPF  K               
Sbjct: 286 VIRGL------DFNFGKEPANTFTNDQHPDLRADFVMANPPFNMKEWDTG-------VKD 332

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           +  R+  G P   + +  +L H+   L      GG   ++L++  + +      E +IRR
Sbjct: 333 DDPRWHYGKPPSGNANFAWLQHMLYHL----APGGSMGLLLANGSMSSNTNT--EGDIRR 386

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSI 434
            L+E+DL+E +VALP  LF  T I   +W L+  K       +R GKV  I+A +L    
Sbjct: 387 ALVEHDLVECMVALPGQLFTNTQIPACIWFLTRNKKARGNLADRSGKVLFIDARNLGYM- 445

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGK 463
             + +  R    +  +++ D +   + G+
Sbjct: 446 --KDRVLRDFKPEDIQKVADTFHVWQQGE 472


>gi|327404959|ref|YP_004345797.1| type I restriction-modification system, M subunit [Fluviicola
           taffensis DSM 16823]
 gi|327320467|gb|AEA44959.1| type I restriction-modification system, M subunit [Fluviicola
           taffensis DSM 16823]
          Length = 515

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 113/549 (20%), Positives = 206/549 (37%), Gaps = 62/549 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IWK A ++ G     DF   +L     R +        E     V 
Sbjct: 1   MT-SIAQRAELQAKIWKIANEVRGSVDGWDFKHFVLGALFYRFISENFTKYIEGGDDGVD 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      +++         F   S+  ++   + NT  NL + + +          
Sbjct: 60  YPNLSDDVITPEIKDDAIKTKGYFIYPSQLFVNVAKTANTNPNLNTDLKAIFVSIESSAF 119

Query: 108 ----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                ++ K +F DFD +S+        K   L  + K    +   + +     +  + Y
Sbjct: 120 GYPSEEDIKGLFADFDTTSSRLGNTVENKNSRLASVLKGVEQLNFGNFEDSEIELFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP  V  L   L +   + + K        +YDP  G+G  
Sbjct: 180 EFLIGNYAANAGKSGGEFFTPVHVSKLIAQLAMHKQEKVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +              GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDNHVIEEG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNIALG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL    F   + F   +SNPP+   W  D D            RF P   L   S    
Sbjct: 281 NTLIDPHFGDDKPFDAIVSNPPYSVNWIGDGDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I+  + +LS  KT+    K Q I+ +        +     ++ D    ++++++
Sbjct: 389 LFYGTSISVTILVLSKHKTDT---KTQFIDVS--GEDFFKKVTNNNVMTDTHIEKVMELF 443

Query: 457 VSRENGKFSRM-LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            S+E+  +  + +D          +     +    ++  +  L+ +   +K      +  
Sbjct: 444 DSKEDVPYEAISIDNTKIAENEYNLSVSSYVEAKDNREQINILDLNKEVKKTVEKINALR 503

Query: 516 LDILKPMMQ 524
            DI   + +
Sbjct: 504 ADIDAIIKE 512


>gi|324992013|gb|EGC23935.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK405]
          Length = 533

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/570 (21%), Positives = 210/570 (36%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------- 49
           E T ++ SL   +W +A+ L       D+   +L     + L   L              
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVVETMEEETES 61

Query: 50  -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLE 101
                A+   Y     S  DL S +K              + +   N             
Sbjct: 62  LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPDLTFTALVDRVNEGIFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++  L+  + K  + +E+        ++ + 
Sbjct: 122 RDIEQCDELYENLFEDIDLYSKKLGATPQKQNQLVAAVMKELAVLEVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A             P  +   GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKFSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW      +     +     FG  L   S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN----DPRFSPFGK-LAPQSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGFYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILEAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KFS +  Y         +  P  +    ++      E        +   +S  
Sbjct: 444 KSREEIDKFSHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAIESQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
           + +L+ + Q        +  +K+ +K  + 
Sbjct: 504 VSLLEMLNQLHGTTPETDVELKQFLKEFKG 533


>gi|304440530|ref|ZP_07400417.1| type I restriction-modification system DNA-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371008|gb|EFM24627.1| type I restriction-modification system DNA-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 528

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/552 (21%), Positives = 208/552 (37%), Gaps = 72/552 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
             +   A L   IW  A+++ G     DF + IL     R +   +    ++   +    
Sbjct: 11  NESLQRAELHRKIWAIADNVRGAVDGWDFKQYILGILFYRFISENITEFFNSAEHEAGDL 70

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
                 L+   +  D           F   SE  ++      T  NL + +A+       
Sbjct: 71  DFDYADLSDEEAERDFRPGTVEDKGFFILPSELFVNVCKDARTNENLNTDLANIFKAIEG 130

Query: 108 -------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
                   D+ K +FED D  S        EK   L  I    + I        D     
Sbjct: 131 SAVGYPSEDDIKGLFEDVDTKSNRLGGNVPEKNKRLADILTGIAEINFGEFQKNDIDAFG 190

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  + S   +   +F TP+ V  L   +++D   ++ K         YDPTCG+
Sbjct: 191 DAYEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKTSINKA--------YDPTCGS 242

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L        +              GQE+      +    M +  +  +     + +I
Sbjct: 243 GSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNVNYN-----NFSI 291

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           ++G TL +     ++ F   +SNPP+  KW  D D      +     RF P   L   S 
Sbjct: 292 KRGDTLLQPKHKDEKPFDAIVSNPPYSIKWIGDADPTLINDE-----RFAPAGKLAPKSY 346

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +  GRAAIV      +   A   E  IR++L++N+ I+ ++ L
Sbjct: 347 ADYAFILHSLSYL----SSKGRAAIVCFPGIFYRKGA---EKTIRQYLVDNNFIDCVIQL 399

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+IAT + +++  KTE    K+  I+A+  +    N      I+       I+
Sbjct: 400 PENLFFGTSIATCILVMAKNKTE---NKILFIDASKEFKKETN----NNILEQKNIDAIV 452

Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLS 508
           + + +R+  + FSR +             V   +      +K  +  L  +I  T +K+ 
Sbjct: 453 EEFRNRDEKEYFSRYVPVEEIVENDYNLSVSTYVEKEDTREKIDIKVLNKEIEETVKKID 512

Query: 509 PLHQSFWLDILK 520
            L  S    + +
Sbjct: 513 ELRASINEIVKE 524


>gi|164688031|ref|ZP_02212059.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM
           16795]
 gi|164602444|gb|EDQ95909.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM
           16795]
          Length = 524

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/541 (22%), Positives = 211/541 (39%), Gaps = 71/541 (13%)

Query: 1   MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LE 49
           MTE    +     L   +W+ A DL G+ +  +F   IL     R L           LE
Sbjct: 1   MTESQQQSQHQKELHARLWEMANDLRGNMEAYEFKNYILGMIFYRYLSDKTTAFVEKLLE 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIAS 106
                 R  +         +E  ++  G+        SE       ++    +L   I S
Sbjct: 61  EDEVDYRGAFNDEEYKEDLIEEMLESLGFVIEPDDLFSEMVKKVENNSFDIEDLHEAINS 120

Query: 107 F---------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRV 154
                      D  + +F+D D SST    +   ++ L+ KI      IE   D     V
Sbjct: 121 LTESTLGRPSQDAFEGLFDDMDLSSTKLGKDVSTRSKLMAKIISAIDSIEFGIDETSIDV 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F +   + A +F T      L   L       +         +  DPTC
Sbjct: 181 LGDAYEYLIGQFAANAGKKAGEFYTATGPAELLCRLTTIGLTDVL--------SAADPTC 232

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L             +K   +    GQEL   T+ +    M++  +        + 
Sbjct: 233 GSGSLLLRL----------NKYANVRTFFGQELTSTTYNLARMNMILHGVPYQ-----NF 277

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I  G TL +D F   +F   ++NPP+  KW  DK   E++ +    G+  P     S  
Sbjct: 278 TIYNGDTLEEDHFEENKFRIQVANPPYSAKWSADK-RFEQDERFSVYGKLAP----KSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL 393
              FL H+   +    +  GR AI+L    LF G A   E +IRR+++E  + ++A++ L
Sbjct: 333 DFAFLQHMIYHM----DDDGRIAILLPHGVLFRGAA---EEKIRRYIIEEQNYLDAVIGL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+I   + +L   +  + +  +  I+A+  + S +N+ + RR    +   +I+
Sbjct: 386 PANLFFGTSIPVCILVLKKDRA-DNKDNIFFIDASKEFESGKNQNRLRR----EDINKIV 440

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           D Y+ RE+  K++              +  P    ++        ++ D  +  L+   +
Sbjct: 441 DTYIKREDVEKYAHKATMDEIAENDFNLNIP---RYVDTFEEEPEVDLDKEFEALAECMR 497

Query: 513 S 513
            
Sbjct: 498 K 498


>gi|291566631|dbj|BAI88903.1| type I restriction enzyme, modification chain [Arthrospira
           platensis NIES-39]
          Length = 813

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 258/709 (36%), Gaps = 92/709 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W   ++L G    + +   +L    L+ +        + +           
Sbjct: 4   KKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSDKYAGKPNPL----------- 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                 +   G +F +  +              +++  A           DF+    + +
Sbjct: 53  -----IIVPQGAAFSDLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADFNDEDKLGK 107

Query: 127 -LEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             E    L ++   F GI L  +    D ++ + YE+L+R F +E  +    F TP +V 
Sbjct: 108 GKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKGQFYTPAEVS 167

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L  P             T+YDPTCG+G  L    +         + P  L  +G
Sbjct: 168 RVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------EAPNGLSIYG 212

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE++  T+++    M +              +       KD  + KRF + ++NPPF  K
Sbjct: 213 QEMDNATYSLARMNMFMHN-HPTAEIWKDNTLAAPYWKEKDG-SLKRFDFAVANPPFSYK 270

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              +      +    E  RFG G+P   +G   FL+H+   L+      G+AA++L    
Sbjct: 271 SWSNG----VDTARDEFNRFGYGVPPAKNGDYAFLLHILKSLK----STGKAAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L   +   R G + +
Sbjct: 323 LFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVLDKAEAATRDG-LFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVL 481
           I+A+  +    N+ +    +      +I+D++ ++ E  ++SR++           + + 
Sbjct: 379 IDASKGFIKDGNKNR----LRSQDIHKIVDVFNNQLEIPRYSRLVSLEEIAANDYNLNIP 434

Query: 482 RPLRMSFILDKTGL-ARLEADITWRKLSPL--HQSFWLDILKPMMQQIYPYGWAESFVKE 538
           R +  S   D   L A +   I    +  L  +   +  +   +  +  P  +  S    
Sbjct: 435 RYIDSSEPEDLHDLNAHINGGIPQGDIDALGHYWQVFPTLKADLFTETRPGYFQLSITNY 494

Query: 539 --SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN---GEWIPDTNLT----- 588
             SIK++      V  + +    + +    +              GE   D         
Sbjct: 495 QHSIKNHPEAVEFVSGTLALYHQWRDHHRARLENIAIGDKPKELIGELSEDLLGRLAAAD 554

Query: 589 ---EYENVPYLESIQ-DYFVREVSPHVPDAY------------IDKIFIDEKDKEIGRVG 632
               Y+    L     +    +V     D +              +   +  D  +G+  
Sbjct: 555 LLDNYDIYQLLMDYWGETMQDDVYLLAQDGWEGGKVLRELVVSKGQKLTETPDLVMGKKK 614

Query: 633 YE---INFN----RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+   I  +    R+F + Q   ++ D+ A+  GV  ++  L+EE   E
Sbjct: 615 YKADLIPPSLLVARYFAEKQA--QIDDLQADCDGVTQELEGLIEENTGE 661


>gi|329903168|ref|ZP_08273390.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
 gi|327548463|gb|EGF33135.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
          Length = 475

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/500 (19%), Positives = 186/500 (37%), Gaps = 73/500 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS---- 65
            +   +W  A+ L  +    ++  ++L    ++ +    +  R+ +  K+          
Sbjct: 4   DIKKTLWATADKLRANMDAAEYKHIVLGLIFVKYISDPFQTRRAELTHKFADTSDDYFLG 63

Query: 66  ---NIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
                 L + ++   Y      F+        TL +   +       ++  S I + +  
Sbjct: 64  EVDQAQLHAELEDRDYYREVNVFWVPEAARWETLRAQAKQADIGKRIDDALSLIETENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDR---VMSNIYEHLIRR 165
            K I +       +      G L ++    S I      DT  +    ++  +YE+ + +
Sbjct: 124 LKGILDKRYARVQLP----DGKLGELVDLVSQIGFGESTDTAKNHARDLLGQVYEYFLGQ 179

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   +    F TP  +V+   ++L                 +YDP CG+GG    +  
Sbjct: 180 FASAEGKRGGQFYTPASIVNTLVSVLAPHHGQ-----------VYDPCCGSGGMFVQSEK 228

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +   G        +  +GQE  P T  +    + IR +      D +   +   T  ++
Sbjct: 229 FIEAHGGKLG---DVSIYGQEANPTTWRLAAMNLAIRGI------DFNLGKEPDDTFVRN 279

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                R  + L+NPPF    W       +         R+  G P   + +  +L H+  
Sbjct: 280 QHPDLRADFVLANPPFNISDWWHGSLEGD--------PRWVYGTPPQGNANYAWLQHMLY 331

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      GRA IVL++  + + +    E +IRR ++E D +E ++ALP  LFF T I 
Sbjct: 332 HLKP----TGRAGIVLANGSMSSSQNT--EGDIRRAMVEADKVEVMIALPGQLFFNTQIP 385

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-- 462
             LW L   K   R+G+V  I+A  L + I    + +     D   +I     +  +G  
Sbjct: 386 ACLWFLVKEK-RARQGEVLFIDARKLGSMI---SRVQCEFTVDVIERIAGTVAAWRDGGA 441

Query: 463 KFSRMLDYRTFGYRRIKVLR 482
           +++ +  Y     R + +  
Sbjct: 442 EYADVAGY----CRSVTLEE 457


>gi|254410687|ref|ZP_05024466.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196182893|gb|EDX77878.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 440

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 148/440 (33%), Positives = 228/440 (51%), Gaps = 51/440 (11%)

Query: 7   SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LA 61
           +   L +FIW  A+D L   F    +  VILP  +LRRL+C LE T+  V E+       
Sbjct: 5   THNKLVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEETKDKVTEEVRFQRED 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIF 115
            G + +D E   + + Y FYN S+++L  L ST   N      N ++Y+  FS+N K I 
Sbjct: 65  VGLTELDPEGLREASDYVFYNVSDWTLKKLVSTAANNRQILEENFKAYLNGFSENVKEII 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTV-----------PDRVMSNIYEHL 162
             FD  S I ++ ++ +L  + + F+   I L P  +            +  M  ++E L
Sbjct: 125 NRFDLRSQIRKMSQSDVLLDVLEKFTSPEINLSPHEITTPDGRKLPGLSNLGMGYVFEEL 184

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IRRF  E +E A +  TPR+V+HL T L+  P     K+        YD  CG+GG LT+
Sbjct: 185 IRRFNEENNEEAGEHFTPREVIHLMTHLVFLP----IKDRLPPTLLGYDGACGSGGMLTE 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + N + D          +  +G+E+  ET+A+C + M+I+        +  +NI+ GSTL
Sbjct: 241 SQNFLQDPNGEIAADTQVFLYGKEVNGETYAICKSDMMIKG-------NNPENIKFGSTL 293

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLP 329
           + D F+  +F + L NPP+GK W+  +  +  + KN    RF                +P
Sbjct: 294 ATDEFSDLKFDFMLENPPYGKSWKTSQKYIM-DGKNVLDSRFEVKLKSFQGEWETIGAVP 352

Query: 330 KISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+++END +
Sbjct: 353 RSSDGQLLFLMDMVSKMKPLEQSPLGSRIASVHNGSALFTGDAGSGESNIRRYIIENDWL 412

Query: 388 EAIVALPTDLFFRTNIATYL 407
           EAI+ LP ++F+ T I+TY+
Sbjct: 413 EAIIQLPQNMFYNTGISTYI 432


>gi|270293232|ref|ZP_06199443.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
 gi|270279211|gb|EFA25057.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
          Length = 533

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 116/570 (20%), Positives = 214/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   +    +   E+    
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLE 101
                     Y     ++ DL + +K              + +   N             
Sbjct: 62  LEAALVVYRNYYEDADTHEDLLAVMKDELNYSIKPDLTFTALVARVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    +  + +FED D  S        ++   +  + K  + +++        ++ + 
Sbjct: 122 RDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW         + +    G+  P     S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASS-GFMADPRFSPFGKLAP----QSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDVHIEKILEAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            SRE   KF+ +  Y         +  P  +    ++      +      + +   +S  
Sbjct: 444 KSREEIDKFAHLASYEDIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINETNKAIESQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +L  + Q       A++ +K+ ++  + 
Sbjct: 504 ASLLDMLNQLHGTTPEADAELKQFLEKFKG 533


>gi|117923445|ref|YP_864062.1| type I restriction-modification system, M subunit [Magnetococcus
           sp. MC-1]
 gi|117607201|gb|ABK42656.1| type I restriction-modification system, M subunit [Magnetococcus
           sp. MC-1]
          Length = 537

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 111/561 (19%), Positives = 199/561 (35%), Gaps = 77/561 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------PTR 52
           MT+     + L   +W  A+DL G     DF   +L F  LR L    E        P  
Sbjct: 1   MTK--EELSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 58

Query: 53  SAVREK------YLAFGGSNIDLESFVKVAGYSFYNT-------------SEYSLSTLGS 93
             ++E        + +  +  D+    K      +               +    + L  
Sbjct: 59  PKLQEDDRRTPLAVWYAANTEDIPDLEKQMRRKMHYVIHPDYLWSSIYERARTQDAELLQ 118

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVP 151
           T  R        SF+   + +F + +  S            K+C   + +       +  
Sbjct: 119 TLQRGFKYIENESFASAFQGLFSELNLHSEKLGRTPVDRNKKLCAIITKVAEGIAQFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F +   + A +F TP+ +  + + ++              +  + D
Sbjct: 179 SDILGDAYEYLIGQFAAGSGKKAGEFYTPQSLSTILSRIVTLDSQEPATGKKRKLSCVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +    +   G       I + +GQE    T+ +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRKQMGTHG-------IGMIYGQEKNITTYNLARMNMLLHGV-----KD 286

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G +L  D             +    ++NPPF  +W       E     GE  R
Sbjct: 287 SGFQIHHGDSLINDWDMLSEMNPAKKVKCDAIVANPPFSYRW-------EPNEALGEDFR 339

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L    +  G  AI+L    LF    G  ES IR  LL
Sbjct: 340 FKSHGLAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFR---GGVESRIRTKLL 392

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++  I+ ++ LP +LFF T I   + +L   K  +    V  INA++ +      GK++ 
Sbjct: 393 KDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKPD---DVLFINASEYFEK----GKRQN 445

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            +  +    I++ Y  R E  +++R ++          +       ++       +++  
Sbjct: 446 QLLPEHIDNIVETYQYRKEEERYARRVEMAEIEKNDYNLNI---SRYVSTAMSEQQIDLG 502

Query: 502 ITWRKLSPLHQSFWLDILKPM 522
               KL  L +       K  
Sbjct: 503 AVNHKLVALEEKIVAATQKHN 523


>gi|228984123|ref|ZP_04144309.1| Type I restriction-modification system, M subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228775651|gb|EEM24031.1| Type I restriction-modification system, M subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 530

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 223/568 (39%), Gaps = 69/568 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
             L + ++  A++L      +++   +L     + L   L      V ++ L    +   
Sbjct: 2   TELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEVADESLEEYNTQEK 61

Query: 69  ------------------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--- 107
                             +E+ V   GY       +++ T  +      L     +F   
Sbjct: 62  QVQLYRELLADEDIKSDLIETLVDTLGYDIEPNYLFNVLTNQAKQNTFQLTELNKAFIDL 121

Query: 108 ---SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               D    +F+D D  S        ++   + ++ K  + +++        V+ + YE 
Sbjct: 122 STRYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDVDVMGHN--GDVIGDAYEF 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP++V  +   +     +         + +++DPT G+G  + 
Sbjct: 180 LIGQFASEAGKKAGEFYTPQEVSDMMACIAAIGQED------KKLFSVFDPTMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +++        P  +  HGQEL   T+ +    +++  ++ +  R     ++ G T
Sbjct: 234 NIRKYISH-------PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 282 LNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFL 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P++LFF
Sbjct: 337 LHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPSNLFF 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +T      V  I+A++ +   +N    +  ++     +I++ Y  R
Sbjct: 390 GTSIPTTVIILKKNRTTR---DVLFIDASNEFDKGKN----QNKLSPKYINKIVETYKKR 442

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           EN  K++ +  +     +   +  P  +    ++  +      +  +++     +    +
Sbjct: 443 ENVEKYAHVATFDEIKGKDFNLNIPRYVDTFEEEESVDMASIGVEIKEIRKEKAALEQIL 502

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
            + +    Y    AE         N  K
Sbjct: 503 FETISSLQYGEEDAEWIKGALEVFNREK 530


>gi|290969061|ref|ZP_06560596.1| type I restriction-modification system, M subunit [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781017|gb|EFD93610.1| type I restriction-modification system, M subunit [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 527

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 117/558 (20%), Positives = 215/558 (38%), Gaps = 74/558 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59
           T+       L   IW  A++L G     DF   IL     R +   L    +    +   
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENLTNYINHGEIEAGK 63

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLST--------LGSTNTRNNLESYI 104
                  ++   +       V+  G+    +  ++               +    LE+  
Sbjct: 64  PNWDFAKISDEEAEEARAGLVEEKGFFILPSELFANIRKKSNEDMEWAKAHLNETLEAVF 123

Query: 105 ASFSD---------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV 154
               +         +   +F DFD +S       A    K+ K  +G+ +++  +V D  
Sbjct: 124 RHIEESSQGSEAESDFAGLFADFDVNSNKLGATVAKRNEKLVKLLNGVADMNLGSVQDHD 183

Query: 155 ---MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   +F TP DV  L T L               +  +YD
Sbjct: 184 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRL--------GTVRKTEVNKVYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  ++  +   G  +        +GQE+   T+ +C   M +  +E D    
Sbjct: 236 PACGSGSLLLKSLKVLGKEGVRNG------FYGQEINITTYNLCRINMFLHDVEFDKF-- 287

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
                 + + +S   +  + F   +SNPP+  KW   +DA           RF P   L 
Sbjct: 288 --DVACEDTLVSPQHWDDEPFELIVSNPPYSIKWAGSEDATLIND-----PRFAPAGVLA 340

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+ 
Sbjct: 341 PKSKADLAFIMHSLSWL----ASNGTAAIVCFPGIMYRGGA---EKKIRQYLVDNNFIDC 393

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP++LFF T+IAT + ++   KT+ R      I+A++    + N       +  +  
Sbjct: 394 IIQLPSNLFFGTSIATCIMVMKKNKTDNR---TLFIDASNECVKVTN----NNKLTPENI 446

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK 506
            +I+ I+  RE     + +  Y         + V   +  +   +K  + +L A+I  ++
Sbjct: 447 DRIVAIFTKREEVAHIAHLASYEEVKENDFNLSVSTYVEAADTREKIDIVKLNAEI--KE 504

Query: 507 LSPLHQSFWLDILKPMMQ 524
           +    Q    +I K + +
Sbjct: 505 IVAREQVLREEIDKIIAE 522


>gi|84385717|ref|ZP_00988748.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
 gi|84379697|gb|EAP96549.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
          Length = 488

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 205/486 (42%), Gaps = 43/486 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L  ++W  A  L G     D+ + I P    +R+    +       E  LA    +
Sbjct: 3   TQQDLEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRISDVYDEE----FENALADSDGD 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAKAIFEDFDFSS 122
           ++  +F +   +     + ++ +   + N     +N + +   +  D  + IF D  +++
Sbjct: 59  LEYAAFAENHHFQVPEGAHWNDARETTVNIGLALQNAMRAIEKANPDTLEGIFGDASWTN 118

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL  A L   + +++S   L+   VPD  + N YE+LI+ F  +    A +F T R 
Sbjct: 119 K-ERLSDAMLT-NLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTNRT 176

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L T ++           P    ++YDPTCG+GG L +   H+   G  ++    L  
Sbjct: 177 VVKLMTMIM----------DPQPGESVYDPTCGSGGLLLNCALHLKGEGKEYRT---LKL 223

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE+   T A+    M +  +E     D+ +     +    +    K+F+  L+NPP+ 
Sbjct: 224 YGQEINLLTSAIARMNMFMHGIE---EFDIVRGNTLSNPGLLENDELKKFNVILANPPYS 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K         K  ++   GR   G P        F  H+   L+L   G GR+  +   
Sbjct: 281 IKSWD-----RKAFESDPHGRNVWGTPPQGCADYAFQQHIQKSLDL---GNGRSISLWPH 332

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E+++RR ++E D +E ++ L  +LF+ + +   L I    K E ++ K+
Sbjct: 333 GILFRD----AETDMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIESKKDKI 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVL 481
             INA       +N G     ++     +I + Y++  + + F+ ++D +    R+  + 
Sbjct: 389 LFINAVKEVRQDKNIG----YLDQVHIDKIFNAYINFTSEENFAVLVDKQAVLDRKANMA 444

Query: 482 RPLRMS 487
             L + 
Sbjct: 445 INLYIR 450


>gi|37679000|ref|NP_933609.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37197742|dbj|BAC93580.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 546

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 208/565 (36%), Gaps = 75/565 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTQ--EQLNKLGKTLWDIADTLRGAMNADDFRDYMLSFLFLRYLSDNFEAAAKKELGKDY 58

Query: 60  LA------------------FGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNTR 97
           L                   +  +  D+  F        +        +S     +    
Sbjct: 59  LDLPKDVLRDLKMSNPLEVWYDENPDDISFFETQMRRKLHYIIKPEHLWSSIAEMARVQD 118

Query: 98  NNLESYIA---------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L   +          SF+ + + +F + + +S     + +    K+C     +     
Sbjct: 119 DELLKTLEEGFKYIENESFNSSFQGLFSEINLNSEKLGKKPSDRNAKLCTIIQKVSEGIA 178

Query: 149 --TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +    ++ + YE+LI  F +   + A +F TP+ +  + + ++              +
Sbjct: 179 QFSTDTDILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKKNKL 238

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             + D  CG+G  L +   H+   G           +GQE    T+ +    ML+  +  
Sbjct: 239 NRVLDFACGSGSLLLNVRKHITVAGGSIG-----KIYGQEKNITTYNLARMNMLLHGV-- 291

Query: 267 DPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              +D   +I  G TL  D             +F   ++NPPF  +WE D+   +++ + 
Sbjct: 292 ---KDTEFDIFHGDTLFNDWELLNEKNPAKKLKFDAVVANPPFSYRWESDRAEFKEDFRF 348

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                   G+   S     FL+H  + L    +  G  AI+L    LF   A   E  IR
Sbjct: 349 K-----NHGIAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRSGA---EQRIR 396

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             LL++  I+ ++ LP++LFF T I   + +L   K   +   V  INA+D       +G
Sbjct: 397 SKLLKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCK---KYDDVLFINASD--EENFEKG 451

Query: 439 KKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           K++  +  +  ++I+D Y  R +  ++SR +           +       ++      A+
Sbjct: 452 KRQNKLRPEDIQKIVDTYRFRDQEERYSRRVSMEEIEKNDFNLNI---SRYVSTAKAEAK 508

Query: 498 LEADITWRKLSPLHQSFWLDILKPM 522
           ++     +KL  + ++    + K  
Sbjct: 509 VDLQAEHKKLVDIEKNINEALDKHN 533


>gi|317014260|gb|ADU81696.1| type I restriction enzyme M protein [Helicobacter pylori
           Gambia94/24]
          Length = 551

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 209/549 (38%), Gaps = 67/549 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YLA 61
              L N IWK A +L G     DF + +L     R +   +    +    K      Y +
Sbjct: 42  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKLDPNFDYAS 101

Query: 62  FGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASF------------- 107
                 ++     +    F+   S    + L +     +L   + +              
Sbjct: 102 LSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQNIFTEIEKSSLGTPS 161

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
            +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L+
Sbjct: 162 EENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGDAYEYLM 221

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   ++ TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 222 AMYASNAGKSGGEYFTPQEVSELLAKITLHNQESINK--------VYDPCCGSGSLLLQF 273

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D              GQE+   T+ +C   M +  +          +I  G TL 
Sbjct: 274 SKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIALGDTLL 322

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  + F   +SNPP+  KW  D + +     N E       L   +   + F MH+
Sbjct: 323 DPKHEDDEPFDAIVSNPPYSTKWVGDNNPLL---MNDERFNKAGALAPKNAADLAFTMHM 379

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L    +  G AAIV     L+ G A   E +IR +L++ + I+ ++ALP +LFF TN
Sbjct: 380 LSYL----SNQGAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIALPENLFFGTN 432

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461
           IAT + +L   K ++       I+A+  +        K+  + +  R +IL  Y+ R+  
Sbjct: 433 IATCILVLKKNKKDDT---TLFIDASKEFVK----EGKKNKLKERNREKILQTYIERKAI 485

Query: 462 GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             F+ + +            V R +      +   +  L  +I+        QS   + L
Sbjct: 486 KHFAALANIEKIQENDYNLSVNRYVEQEDTKEIIDIKALNGEISQI---VKKQSALRNSL 542

Query: 520 KPMMQQIYP 528
           + +++++  
Sbjct: 543 ESIIKELEA 551


>gi|241763494|ref|ZP_04761547.1| N-6 DNA methylase [Acidovorax delafieldii 2AN]
 gi|241367335|gb|EER61666.1| N-6 DNA methylase [Acidovorax delafieldii 2AN]
          Length = 516

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 181/471 (38%), Gaps = 64/471 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-------REKYLAF 62
            +   +W  A+ L  +    ++  ++L    ++ +       R+ +        ++Y   
Sbjct: 4   DIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPDDEYFYG 63

Query: 63  GGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
                D+E+ ++   Y      F+         L +   +       ++  + I + +  
Sbjct: 64  DADPADIEAELEDRDYYKEVNVFWVPEGARWEALRNAAKQPDIGKRIDDALTLIEAENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSE 169
            K I +     + +      G L ++    S I    D  +   V+  +YE+ +  F S 
Sbjct: 124 LKGILDKRYARAQLP----DGKLGELVDLVSTIGFGEDAAIARDVLGQVYEYFLGMFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L   +             +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPASIVKTLVAILSPHEG-----------KVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   +   T +++    
Sbjct: 229 HGGKLG---DVSIYGQEANPTTWRLAAMNLAIRGI------DYNLGREPADTFTRNQHPD 279

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            R  Y L+NPPF    W       +         R+  G P   + +  +L H+ + L+ 
Sbjct: 280 LRADYILANPPFNISDWWHGSLEGD--------PRWEFGDPPHGNANYAWLQHMLHHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + + +  + E  IR  +++ D++E +VALP  LFF T I   LW
Sbjct: 332 ----TGRAGIVLANGSMSSSQ--NNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            L+ +K   R+G+V  I+A      I    + +  + D+   +I  +  + 
Sbjct: 386 FLAKQKA--RKGEVLFIDARKQGRMI---SRVQAELTDETIARIEAVVAAW 431


>gi|240171167|ref|ZP_04749826.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium kansasii ATCC 12478]
          Length = 520

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 99/473 (20%), Positives = 180/473 (38%), Gaps = 70/473 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK+A+ L G    + +  VIL    L+ L  A    R A+     A G   
Sbjct: 11  TLKELQDTLWKSADKLRGSIGASQYKDVILGLLFLKYLSDADTEQRIAIGATLSAGG--- 67

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-----YIASFSDNAKAIFEDFD-- 119
                       +F          L +     ++ +      I +  D+A       +  
Sbjct: 68  --------TDRGAFTVPPNARWELLAAHAEGKSVVAGEPAKSIGALIDDAMDAVMQANPA 119

Query: 120 FSSTIARLEK-----AGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSE 172
            + ++ R+          L ++   FS        +     +M  +YE+ +  F     +
Sbjct: 120 LAVSLPRMYNRDNIDQRRLGELVGLFSTARFSRQGEHRARDLMGEVYEYFVGNFARAEGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  VV +   +L           P     +YDP CG+GG    A     +   
Sbjct: 180 RGGEFFTPASVVKVIVEVL----------EPSRG-RVYDPCCGSGGMFVQAEKFAYE--- 225

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE   ET  +    + +  ++       +K ++ G T   D   G R 
Sbjct: 226 HSGDVNDICIYGQESVEETWRMAKMNLAVHGID-------NKGLRWGDTFVCDQHAGVRM 278

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y ++NPPF  K            ++ +  R+  G+P  ++ +  ++ H+ +KL      
Sbjct: 279 DYVMANPPFNIKDWA---------RDEKDPRWRFGVPPANNANYAWIQHILSKL----AP 325

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRA +V+++  + +   G  E  IR  +++ DL+  +VALP  LF  T I   LW  + 
Sbjct: 326 GGRAGVVMANGSMSSNSNG--EGIIRAHIVDADLVSCMVALPAQLFRSTGIPVCLWFFAM 383

Query: 413 RKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            K        +R G+V  I+A +    +    +  R +  ++   I D Y + 
Sbjct: 384 DKKAGCQGAIDRSGQVLFIDAREFGHLV---DRTERALAAEEITLIGDTYHAW 433


>gi|241762572|ref|ZP_04760646.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372833|gb|EER62530.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 495

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 173/459 (37%), Gaps = 59/459 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L  + + +D+  V L    LR +  A E    A+    L    +  D + ++  A 
Sbjct: 4   AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHVALM---LDDPAAAEDPDEYL--AE 58

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG------ 131
             F+       S L      N     I    D A    E  +       L K        
Sbjct: 59  NIFWVPETARWSHLRD----NARSPSIGKIIDEAMLAIEKANPEQLKGVLPKDYGRPALD 114

Query: 132 --LLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             +L ++    S I +   D     V+  +YE+ +  F     +   +F TP  VV    
Sbjct: 115 SVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 174

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L           P     +YDP CG+GG    +   V   G        +  +GQE  
Sbjct: 175 SML----------EPYKG-RVYDPCCGSGGMFVQSERFVETHGGKLG---DIAIYGQESN 220

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             T  +    + +R + +D R +         +  +D     RF Y L+NPPF       
Sbjct: 221 HTTWRLARMNLAVRGIGADIRWNNEG------SFLRDELKDLRFDYILANPPFNVSDW-- 272

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                      E  R+  G P   + +  +L H+   L       G A +VL++  + + 
Sbjct: 273 ------NASLEEDPRWQYGKPPAGNANYAWLQHILWHL----APDGTAGVVLANGSMSSN 322

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EERRGKVQL 424
           +    E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K      +R G++  
Sbjct: 323 QNS--EGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKKQKGWRDRGGEILF 380

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           I+A  L   +    + RR + D+   +I D Y +    K
Sbjct: 381 IDARKLGKLV---DRTRRELTDEDVARIADTYHAWRGEK 416


>gi|319945007|ref|ZP_08019269.1| type I modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319741577|gb|EFV94002.1| type I modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 571

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 198/581 (34%), Gaps = 105/581 (18%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-FGGSNI 67
             L   +W  A+ L  +     +  ++L    L+ +  A E  +  +RE++        +
Sbjct: 10  NDLEKKLWTAADKLRSNLDAAVYKHIVLGLIFLKYVSDAFEERQRELREQFTNPDHDYYM 69

Query: 68  DLESF--------------------VKVAGYSFYNTSEYSLSTL---------------G 92
           D + +                           F+   E    TL                
Sbjct: 70  DPDEYGGAGTLEYEDNIATELEVRDYYTEKNVFWVPLEARWQTLRDCAQLPPKAALPWNK 129

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSGIEL 145
                      +    DNA    E  +       +   AR++  +  L  +  +FS  + 
Sbjct: 130 PGKDEPEEMRSVGWLIDNAMEAVERENARLKNVLNKDFARVQLDSSKLAGLISHFSDTDF 189

Query: 146 H--------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
                     D     ++ ++YE+ + +F     +    + TP+ +V L   +L      
Sbjct: 190 SAKEYKGQPLDLKSKDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEMLQPFKG- 248

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVC 255
                      +YDP  G+GGF   +   +   G    +     +  +GQE  P T  + 
Sbjct: 249 ----------RVYDPAMGSGGFFVQSEEFIEQHGGKATNGKSGQISVYGQESNPTTWRLA 298

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEK 314
              M IR +      D +       TL  DL    R  + ++NPPF  K W  +K A + 
Sbjct: 299 AMNMAIRGI------DFNFGSGPADTLLNDLHPDLRADFVMANPPFNMKEWWNEKLAAD- 351

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                   R+  G P   + +  +L H+   L       G  A++L++  +      + E
Sbjct: 352 -------PRWIAGTPPQGNANFAWLQHMLWHL----APTGSMALLLANGSM--SSNTNNE 398

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQLI 425
            EIR+ L+E+D +E +VALP  LF  T I   +W L+          +K  +RRGK   I
Sbjct: 399 GEIRKRLVEDDYVECMVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGKFLFI 458

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRI 478
           +A  +      + +  R    +  ++I D + + + G+       F              
Sbjct: 459 DARQMGYM---KDRVLRDFTVEDIQKIADTFHAWQQGEGYEDVPGFCHSAKLDEIRKHE- 514

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            VL P R     ++       A+   R  + L + F     
Sbjct: 515 HVLTPGRYVGAAEQEDDGEPFAEKMQRLTAQLAEQFVESAK 555


>gi|89073170|ref|ZP_01159709.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
 gi|89051123|gb|EAR56580.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
          Length = 529

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 97/511 (18%), Positives = 194/511 (37%), Gaps = 70/511 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------E 57
              L   +W+ A  L G  +  DF   IL     + L   L      +           +
Sbjct: 6   QKELNLQLWQIATHLRGQMQGDDFRNYILGLLFYKYLSDKLIRYADELLLDDGIRFAQID 65

Query: 58  KYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFS---- 108
           +    G   ++   E    V GY F  +  + +      N     +++   +        
Sbjct: 66  EKSEDGQEYLEAIKEEARNVLGYFFKPSELFHVLAEAGANGKFILDDVRDVLNDIEQSTM 125

Query: 109 -----DNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                D+   +F++ D +S         +  L+ K+ ++   I+ H +     ++ + YE
Sbjct: 126 GADSADDFDGLFDELDLTSNKLGKTPDARNKLIAKVLEHLDNIDFHLENSEIDILGDAYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F S   + A +F TP+ +  L   L+   ++ +         ++YDPTCG+G  L
Sbjct: 186 YLIGMFASGAGKKAGEFYTPQILSKLLAKLVTLGNEDI--------ESVYDPTCGSGSLL 237

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     +          +  +GQE  P T+ +    M++  L+ D       +I+   
Sbjct: 238 LQAARESRNL--------DVKCYGQEQNPNTYNLARMNMIMHGLDYDG-----FDIKNAD 284

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL        RF   ++NPPF   W         + +  E G+  P     +     F+ 
Sbjct: 285 TLHAPQHLNLRFDAIVANPPFSMHWSPTP-LYMSDPRFAESGKLAP----KTKADYAFIQ 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFF 399
           H+  +L    +  G  A+V+    LF   A   E  IR++L+ + + ++ ++ LP+++  
Sbjct: 340 HMLYQL----SDTGTMAVVVPHGVLFRSLA---EGHIRKFLIKDKNYLDMVIGLPSNIVL 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T +   + +    +  +    V  I+A+  +   +N       + ++  ++IL+    R
Sbjct: 393 GTGVPVCILVFKKSRKVD--DNVLFIDASQHFEKGKNA----NYLREEDLQRILNAVSKR 446

Query: 460 EN-GKFSRMLDYRTFGY--RRIKVLRPLRMS 487
           EN  +FS +            + + R +  S
Sbjct: 447 ENIDQFSHLASISDIAEQDYNLNISRYVDAS 477


>gi|322388270|ref|ZP_08061874.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|321140942|gb|EFX36443.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
          Length = 533

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 118/570 (20%), Positives = 213/570 (37%), Gaps = 65/570 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           E T ++ SL   +W +A+ L       D+   +L     + L   +    +   E+    
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGTDS 61

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLE 101
                     Y     ++ DL S +               + +   N             
Sbjct: 62  LEDALEVYRNYYEDADTHEDLVSVMNDELNYIIKPDLTFTALVARVNEGTFQLEDLAQGF 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             I    D  + +FED D  S        ++   +  + K  + +++        ++ + 
Sbjct: 122 RDIEQSDDLYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHA--GDMLGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+G 
Sbjct: 180 YEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QEGFTIYDATMGSGS 233

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +A  +          P  +V  GQEL   T+ +    M++  +  +     ++ +  
Sbjct: 234 LLLNAKKYSHK-------PQTVVYFGQELNTSTYNLARMNMILHGVPVE-----NQFLHN 281

Query: 279 GSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             TL +D  T +   F   L NPP+  KW      +     +     FG  L   S    
Sbjct: 282 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN----DPRFSPFGK-LAPQSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP +
Sbjct: 337 AFLLHGYYHLKQ---DNGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPAN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I T + IL   +T      V  I+A+  +   +N    + I+ D    +IL+ Y
Sbjct: 391 IFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIMTDAHIEKILEAY 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            S E   KF+ +  Y         +  P  +    ++      +      + +   +S  
Sbjct: 444 KSHEEMDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINQTNQAIESQT 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +L+ + Q       A++ +KE ++  + 
Sbjct: 504 ASLLEMLGQLHGTTPEADAELKEFLQEFKG 533


>gi|261210086|ref|ZP_05924384.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|297580647|ref|ZP_06942573.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
 gi|260840851|gb|EEX67393.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|297535063|gb|EFH73898.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
          Length = 546

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 110/565 (19%), Positives = 208/565 (36%), Gaps = 75/565 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTQ--EQLNKLGKTLWDIADTLRGAMNADDFRDYMLSFLFLRYLSDNFEAAAKKELGKDY 58

Query: 60  LA------------------FGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNTR 97
           L                   +  +  D+  F        +        +S     +    
Sbjct: 59  LDLPKDVLRDLKMSNPLEVWYDENPDDISFFETQMRRKLHYIIKPEHLWSSIAEMARVQD 118

Query: 98  NNLESYIA---------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L   +          SF+ + + +F + + +S     + +    K+C     +     
Sbjct: 119 DELLKTLEEGFKYIENESFNSSFQGLFSEINLNSEKLGKKPSDRNAKLCTIIQKVSEGIA 178

Query: 149 --TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +    ++ + YE+LI  F +   + A +F TP+ +  + + ++              +
Sbjct: 179 QFSTDTDILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKKKNL 238

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             + D TCG+G  L +   H+   G           +GQE    T+ +    ML+  +  
Sbjct: 239 NRVLDFTCGSGSLLLNVRKHITSAGGSIG-----KIYGQEKNITTYNLARMNMLLHGV-- 291

Query: 267 DPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              +D    I  G TL  D             +F   ++NPPF  +WE D+   +++ + 
Sbjct: 292 ---KDTEFEIFHGDTLLNDWDLLNEKNPAKKLKFDAVVANPPFSYRWESDRAEFKEDFRF 348

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                   G+   S     FL+H  + L    +  G  AI+L    LF G +   E  IR
Sbjct: 349 K-----NHGIAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGS---EQRIR 396

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             LL++  I+ ++ LP++LFF T I   + +L   K   +   V  INA+D       +G
Sbjct: 397 SKLLKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCK---KYDDVLFINASD--EENFEKG 451

Query: 439 KKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           K++  +  D  ++I+D Y  R +  ++SR +           +       ++      A+
Sbjct: 452 KRQNKLRPDDIQKIVDTYRFRDQEERYSRRVSMEEIEKNDFNLNI---SRYVSTAKAEAK 508

Query: 498 LEADITWRKLSPLHQSFWLDILKPM 522
           ++     +KL  + +     + K  
Sbjct: 509 VDLQAEHKKLVDIEKDINEALDKHN 533


>gi|256832724|ref|YP_003161451.1| type I restriction-modification system, M subunit [Jonesia
           denitrificans DSM 20603]
 gi|256686255|gb|ACV09148.1| type I restriction-modification system, M subunit [Jonesia
           denitrificans DSM 20603]
          Length = 521

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 114/533 (21%), Positives = 201/533 (37%), Gaps = 70/533 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--- 58
           T      A L   IW+ A DL G     DF   +L     R +   L    +    K   
Sbjct: 4   TTKESQRAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNKAEHKAGD 63

Query: 59  ----YLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASFSD---- 109
               Y     +  +      V    FY   S+   +   +  T  NL   +         
Sbjct: 64  ASFDYARLPDAQAEFGRKETVEEKGFYILPSDLFQNVRRNAATDPNLNETLERVFKDIEG 123

Query: 110 ---------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMS 156
                    + K +F+D D +S+      A    K+ K    I +L      D    +  
Sbjct: 124 SALGTESEGDLKGLFDDLDVNSSKLGNTVARRNEKLVKLLDAIGDLPLGNFEDNSIDLFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L++ + S+  +   ++ TP++V  +   + +     + K        +YDP  G+
Sbjct: 184 DAYEYLMQMYASQAGKSGGEYYTPQEVSEVLARIAVAGKKRVNK--------VYDPAAGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +               +GQE+   T+ +    M +  +  +       ++
Sbjct: 236 GSLLLKFAKVLGKENVGG-------FYGQEINLTTYNLARINMFLHDVNYEK-----FSL 283

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+       + F   +SNPP+  KWE D + +    +     RF P   L   S 
Sbjct: 284 AHGDTLTDPQHWDDEPFEAIVSNPPYSIKWEGDANPLLINDE-----RFAPAGVLAPKSK 338

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L +     G AAIV     L+ G A   E++IR++L++N+ ++A++ L
Sbjct: 339 ADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVDAVIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF T IAT + +L   K +     V  ++A++ +  + N+ K    +  D ++ IL
Sbjct: 392 PPDLFFGTTIATCIIVLKKSKADNA---VLFVDASNEFKRVGNKNK----LLPDHQKNIL 444

Query: 454 DIYVSRE-NGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           D    R        ++           I V   +      +   +  L A+I 
Sbjct: 445 DALEQRVPVDHRVALISNEEIAANDYNIAVSSYVEAEDTREVINITELNAEIA 497


>gi|78773893|gb|ABB51238.1| type I RM system M subunit [Arthrospira platensis]
          Length = 814

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 258/709 (36%), Gaps = 92/709 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W   ++L G    + +   +L    L+ +        + +           
Sbjct: 4   KKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSDKYAGKPNPL----------- 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                 +   G +F +  +              +++  A           DF+    + +
Sbjct: 53  -----IIVPQGAAFSDLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADFNDEDKLGK 107

Query: 127 -LEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             E    L ++   F GI L  +    D ++ + YE+L+R F +E  +    F TP +V 
Sbjct: 108 GKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKGQFYTPAEVS 167

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L  P             T+YDPTCG+G  L    +         + P  L  +G
Sbjct: 168 RVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------EAPNGLSIYG 212

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE++  T+++    M +              +       KD  + KRF + ++NPPF  K
Sbjct: 213 QEMDNATYSLARMNMFMHN-HPTAEIWKDNTLAAPYWKEKDG-SLKRFDFAVANPPFSYK 270

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              +      +    E  RFG G+P   +G   FL+H+   L+      G+AA++L    
Sbjct: 271 SWSNG----VDTARDEFNRFGYGVPPAKNGDYAFLLHILKSLK----STGKAAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L   +   R G + +
Sbjct: 323 LFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVLDKAEAATRDG-LFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVL 481
           I+A+  +    N+ +    +      +I+D++ ++ E  ++SR++           + + 
Sbjct: 379 IDASKGFIKDGNKNR----LRSQDIHKIVDVFNNQLEIPRYSRLVSLEEIAANDYNLNIP 434

Query: 482 RPLRMSFILDKTGL-ARLEADITWRKLSPL--HQSFWLDILKPMMQQIYPYGWAESFVKE 538
           R +  S   D   L A +   I    ++ L  +   +  +   +  +  P  +  S    
Sbjct: 435 RYIDSSEPEDLHDLNAHINGGIPQGDINALGHYWQVFPTLKADLFTETRPGYFQLSITNY 494

Query: 539 --SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN---GEWIPDTNLT----- 588
             SIK++      V  + +    + +    +              GE   D         
Sbjct: 495 QHSIKNHPEAVEFVSGTLALYHQWRDHHRARLENIAIGDKPKELIGELSEDLLGRLAAAD 554

Query: 589 ---EYENVPYLESIQDY-FVREVSPHVPDAY------------IDKIFIDEKDKEIGRVG 632
               Y+    L          +V     D +              +   +  D  +G+  
Sbjct: 555 LLDNYDIYQLLMDYWGETMQDDVYLLAQDGWEGGKVLRELVVSKGQKLTETPDLVMGKKK 614

Query: 633 YE---INFN----RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+   I  +    R+F + Q   ++ D+ A+  GV  ++  L+EE   E
Sbjct: 615 YKADLIPPSLLVARYFAEKQA--QIDDLQADCDGVTQELEGLIEENTGE 661


>gi|108563258|ref|YP_627574.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837031|gb|ABF84900.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 507

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 117/548 (21%), Positives = 208/548 (37%), Gaps = 71/548 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YLAFGG 64
           + N IWK A +L G     DF + +L     R +   +    +    K      Y     
Sbjct: 1   MHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKKERKRDPDFDYAKLSD 60

Query: 65  SNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDN 110
                    +      F   S    + L +     +L   + +               +N
Sbjct: 61  EEAKHARKHLIEEKDFFIPPSALFCNALKNAPHNEDLNVTLQNIFNEIEKSSLGTPSEEN 120

Query: 111 AKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRF 166
            K +F D D +S     +   +   L KI +   G++L         V  + YE+L+  +
Sbjct: 121 VKGLFADLDVNSNKLGSSHKNRVEKLTKILEAIGGMQLGDYLKSGIDVFGDAYEYLMAMY 180

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L      
Sbjct: 181 ASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQFSKV 232

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D              GQE+   T+ +C   M +  +          +I  G TL    
Sbjct: 233 LGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINY-----TKFHIALGDTLLDPK 281

Query: 287 F-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLA 343
               + F   +SNPP+  KW  D + +    +     RF P   L   +   + F MH+ 
Sbjct: 282 HEDDEPFDAIVSNPPYSTKWGGDNNPLLINDE-----RFSPAGVLAPKNAADLAFTMHML 336

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L    +  G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LFF TNI
Sbjct: 337 SYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFGTNI 389

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           AT + +L   K ++       I+A+  +        K+  +    R +IL  Y+ R+  K
Sbjct: 390 ATCILVLKKNKKDDT---TLFIDASKEFVK----EGKKNKLKAHNREKILQTYIERKEVK 442

Query: 464 -FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            F  + +            V R +      +   +  L ++I+        QS   + L 
Sbjct: 443 HFCALANMEQIQENDYNLSVNRYVEQEDTKEAIDIKALNSEISQI---VEKQSALRNRLD 499

Query: 521 PMMQQIYP 528
            +++++  
Sbjct: 500 RIIKELEA 507


>gi|332535332|ref|ZP_08411131.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035245|gb|EGI71752.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
          Length = 544

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 117/545 (21%), Positives = 201/545 (36%), Gaps = 72/545 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           MT+       L   +W  A+ L G      F   +L    LR L    E           
Sbjct: 1   MTQ--EQLKDLGKTLWDIADSLRGAMNADGFRDYMLSLLFLRYLSDNYEAAAQKELGRDY 58

Query: 57  ----------EKYLAFGGSNIDLESFVKVAGYSFY--------NTSEYSLSTLGSTNTRN 98
                     +  L +  ++ D+  F K      +         TS   L+   ++    
Sbjct: 59  PRLTADDKTAQLALWYAENSADVSEFEKQMRRKLHYVIEPHHLWTSIAELARTQNSELLQ 118

Query: 99  NL---ESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
            L     YI   SF+ N K +F + + +S       A    K+C     I   +   +  
Sbjct: 119 TLEVGFKYIEEQSFNSNFKGLFSEINLNSERLGKTPADRNKKLCSIIQKISEGIAEFSAD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE LI +F +   + A +F TP+ +  + + +++             +  + D
Sbjct: 179 SDILGDAYEFLISKFAAGSGQKAGEFYTPQPISTILSEIVILDSQEPKTGPKKKLNKVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +   H+ D G           +GQE    T  +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRKHIVDAGGSVG-----KIYGQEKNVTTFNLARMNMLLHGI-----KD 288

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              +I  G TL  D             +F   ++NPPF  +W+  +         GE  R
Sbjct: 289 TEFDIHHGDTLLNDWDMLSEMNPAKKLKFDAIVANPPFSYRWDPSEAQ-------GEDFR 341

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L    +  G  AI+L    LF G A   E  IR  LL
Sbjct: 342 FKSHGLAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGA---EQRIRTKLL 394

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            +  I+ ++ LP +LFF T I   + +L   K   +   V  INA++ +   + +   R 
Sbjct: 395 NDGHIDTVIGLPANLFFSTGIPVCIIVLKKCK---KYDDVLFINASEHYEKGKRQNTLRE 451

Query: 443 IINDD--QRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR 497
              D+    ++I++ Y  R E  ++SR +           + + R +  +    K  +  
Sbjct: 452 GKGDEPNDIKKIVETYQYRSEEERYSRSVSMAEIEKNDFNLNISRYVSTAKAEIKVNITE 511

Query: 498 LEADI 502
           +  D+
Sbjct: 512 VNKDL 516


>gi|332673346|gb|AEE70163.1| type I restriction-modification system [Helicobacter pylori 83]
          Length = 583

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 116/526 (22%), Positives = 199/526 (37%), Gaps = 68/526 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTRSAVREKYL 60
              L N IWK A  L G     DF + +      R +   +       E       +  L
Sbjct: 70  RNELHNTIWKVANKLRGSVDGWDFKQYVFSILFYRYISENMAHYINKQEREHDPNFDYAL 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
                    +  + V    F   S    + L +    N+L   + +              
Sbjct: 130 LSDEEAESAKEGLIVEKGFFIPPSALFCNVLKNAPHNNDLNVTLQNIFNEIEKSSLGFKS 189

Query: 108 SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
            +N K +F D D +S     +   +   L +I +   G++L         V  + YE+L+
Sbjct: 190 EENVKGLFADLDVNSNKLGSSHKNRVKKLNEILQAIGGMQLGDYQKSGIDVFGDAYEYLM 249

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 250 TMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCGSGSLLLQF 301

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D              GQE+   T+ +C   M +  +          +I  G TL 
Sbjct: 302 SKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIAHGDTLL 350

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                  + F   +SNPP+  +W  DK+ +    +     RF P   L       + F M
Sbjct: 351 DPKHEDDEPFDAIVSNPPYSIEWVGDKNPILINDE-----RFSPAGVLAPKKTADLAFTM 405

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L    +  G AAIV     L+ G A   E++IR +L++N+ I+ ++ALP +LFF 
Sbjct: 406 HMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVQNNFIDCVIALPDNLFFG 458

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +L   K ++       I+A+  +        K+  + +  R +IL  Y  R+
Sbjct: 459 TSIATCILVLKKNKQDDT---TLFIDASKEFVK----EGKKNKLKEHNREKILKTYTERK 511

Query: 461 -NGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
               FS +              V R +      +   +  L A+I+
Sbjct: 512 AIKHFSALASMELIKENDYNLSVNRYVEQEDTKEIIDIKALNAEIS 557


>gi|328952628|ref|YP_004369962.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452952|gb|AEB08781.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 522

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/555 (20%), Positives = 214/555 (38%), Gaps = 58/555 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     + A L +++W+ A  + G      F   ILPF  L+RL    +     +   + 
Sbjct: 1   MANKLDAPA-LESWLWEAACQIRGPLDAPKFKDYILPFIFLKRLSDVFDDEVEHLAHDFG 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDNAKAIFED 117
               +   ++   K+  +     + +      +T     L      +A  +     + + 
Sbjct: 60  DRKIAATLVDQDHKLVRFYMPKAARWPHIATITTGLGQALTDAVRAVARENPKLSGVIDI 119

Query: 118 FDFSSTI--ARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
            DF++T    R+     L  + +  +     L  + V   ++   YE+L+R+F     + 
Sbjct: 120 TDFNATAAGQRIVDDSRLAALVQVLNNPNYRLGLEDVEPDILGRAYEYLLRKFAEGQGQS 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP +V  +   +L           P    T+ DP CG+GG L      + +    
Sbjct: 180 AGEFYTPLEVGIVMARIL----------EPQPGMTVCDPCCGSGGLLIKCHLRLLETKGE 229

Query: 234 HKIPPI--------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                +        L  +GQE+   T A+      I  +E+D           G T+ + 
Sbjct: 230 KHNGRLKLPPAIAPLQLYGQEINSVTFAMARMNAFIHDMEADIAL--------GDTMHRP 281

Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            FT      + F    +NP + +K+          ++N    RFG G+P  S     ++ 
Sbjct: 282 AFTEGDGRLRHFALVTANPMWNQKFGA------ATYENDTYERFGRGVPPSSSADWGWVQ 335

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDL 397
           H+   L    +  GR A+VL +  +  G   +G   E +IR+  +E D IEA++ LP +L
Sbjct: 336 HMTAIL----SDSGRMAVVLDTGAVSRGSGNTGSNKERDIRKKFVEEDRIEAVLLLPENL 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T     + +L+ RK     G++ LINA+ L+   R +      + +    QI  +Y 
Sbjct: 392 FYNTTAPGIVMVLNCRK--RHPGEILLINASKLFAKGRPK----NYLEEAHLEQIAQVYQ 445

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             +  +    +  +    R    L P R      ++ +  L+  +     +   ++    
Sbjct: 446 DWQAKESLATVITKAEAARNDYNLSPSRYVSTGVESEVLPLDEAVVLLAEAEEERAEADR 505

Query: 518 ILKPMMQQIYPYGWA 532
            L  +++++   GW 
Sbjct: 506 QLDEILKKLGFIGWR 520


>gi|295107662|emb|CBL05205.1| Type I restriction-modification system methyltransferase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 526

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/542 (22%), Positives = 208/542 (38%), Gaps = 77/542 (14%)

Query: 1   MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTR 52
           M   T     A L   IW  A+DL G     DF + IL     R +   L      +   
Sbjct: 1   MANTTKEQQRAELHKTIWSIADDLRGSVDGWDFKQYILCTLFYRFVSENLCTYLAEQEGD 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-------------------SLSTLGS 93
           ++     ++   +       VK  G+    +  +                    L+ L S
Sbjct: 61  ASFDYASMSDDQAEWGRGETVKEKGFFILPSELFCNILKHVDKDGMRLTEDGQDLNELLS 120

Query: 94  TNTRNNLESYIASFSD-NAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDT 149
              +N   S + + S+ + K +F+D D +S       +E+   L K+      ++     
Sbjct: 121 QTFKNIEGSAVGTESEGDLKGLFDDMDVNSAKLGNSVIERNKKLVKLISKIGSLDFGGAF 180

Query: 150 VPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+L+  + S   +   +F TP++V  L   + +    ++ K       
Sbjct: 181 QDNSIDAFGDAYEYLMTMYASNAGKSGGEFFTPQEVGELLARIAIGDRKSVNK------- 233

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+GG L      +      +         GQE+   T+ +    M +  +  D
Sbjct: 234 -VYDPCCGSGGLLLKFAKILGKENVRNG------YFGQEINLTTYNLARINMFLHDVNFD 286

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL +      + F   +SNPP+  KWE   + +          RF P
Sbjct: 287 K-----FDIALGDTLKEPAHWDDEPFDAIVSNPPYSIKWEGKANPLNIND-----ARFSP 336

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F MH+ + L       G AAIV     L+ G A   E +IR +L+ N
Sbjct: 337 AGVLAPASKADLAFTMHMLSWLSTE----GTAAIVEFPGVLYRGGA---EGKIRDYLVRN 389

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +EA++ LP DLFF T IAT + +L   KT      V  I+A++ +    ++ K    +
Sbjct: 390 NFVEAVIQLPADLFFGTTIATCIIVLKKNKTAS---DVLFIDASEQFERRDSKNK----L 442

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEAD 501
                 +I+    SRE  + F+R +           + V   +      ++  +A L A+
Sbjct: 443 MPANIERIMAAVSSREEEEHFARCVANDEVLANDANLSVSSYVEKKDEREEIDIAELNAE 502

Query: 502 IT 503
           IT
Sbjct: 503 IT 504


>gi|317130966|ref|YP_004097248.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522]
 gi|315475914|gb|ADU32517.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522]
          Length = 488

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/522 (21%), Positives = 207/522 (39%), Gaps = 55/522 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L  ++W +A  L G     D+ + I P   L+RL    +   +   +     G   
Sbjct: 5   SLEKLERYLWGSANFLRGHIDAGDYKQFIFPLLFLKRLCDVYDEEYN---DSLNTLGEDF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTI 124
            +   F+   G+ + +  +         N    +++ +A          E    D   T 
Sbjct: 62  DENHRFIIPKGHHWNDIRK------KVNNIGTAIQTAMAEIEKANIGRLEGIFGDAQWTN 115

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                  LL  + ++FS   L    V +  +   YE+LI++F  +    A++F + R +V
Sbjct: 116 KDRLPDSLLKDLIEHFSQQTLSLQNVSEDELGQAYEYLIKKFADDSGHTAQEFYSNRTIV 175

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L T LL           P    ++YDPTCG+GG L  +  H+ + G  ++    L   G
Sbjct: 176 RLMTELL----------EPNPKESVYDPTCGSGGMLLLSALHLKEKGKEYR---SLRLFG 222

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE+   T ++    M +  +E D        ++  + +  D    ++F   L+NPP+  K
Sbjct: 223 QEINLITSSIAKMNMFLHGIE-DFEILRGDTLENPAFIKNDKL--RQFDIVLANPPYSIK 279

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +       +    GR   G P  S     FL H+   L+      GR AI+     
Sbjct: 280 RWNRE-----RWETDPYGRNIYGTPPKSRADYAFLQHIIKSLKADT---GRCAILFPHGV 331

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF       E E+R  L+++D+IE I+ L ++LF+ + +   +      K E+R+GK+  
Sbjct: 332 LFRD----AEQEMRENLVKSDVIECILGLGSNLFYNSPMEACVIFCRTNKKEDRKGKILF 387

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRP 483
           INA +    +R E +    I+ +   +I  +Y   +    FS +++          +  P
Sbjct: 388 INAIN---QVRRE-RTMSYIDPEHIEEIKGVYDEFKSINGFSNVVEVDEVLKNNANLNIP 443

Query: 484 LR-----------MSFILDKTGLARLEADITWRKLSPLHQSF 514
           L            ++  +++  +     D ++ +L  L Q  
Sbjct: 444 LYVIDNKQYKNFTINETVEEYQIDSSSIDDSFTELFKLVQEV 485


>gi|238926418|ref|ZP_04658178.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Selenomonas flueggei ATCC 43531]
 gi|238885822|gb|EEQ49460.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Selenomonas flueggei ATCC 43531]
          Length = 525

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/534 (20%), Positives = 201/534 (37%), Gaps = 73/534 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRS 53
           +     A L   IW+ A DL G     DF + +L     R +   L         E   +
Sbjct: 4   KKEVERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREAGDT 63

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
           A     L    +  + ++ V++ G+ F   SE   + L    T  +L   +         
Sbjct: 64  AFDYAALPDDEAMAEKDNIVQILGF-FIPPSELFQNVLARAETNESLNETLEQVFRHIES 122

Query: 108 -------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMS 156
                   D+   +F++FD +S+       E+   L K+      + L H          
Sbjct: 123 SATGTPSQDDLTGLFDEFDVNSSKLGATVKERNAKLTKLLSGVGAMRLGHYQDNTIDAFG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+R + S   +   ++ TP++V  L T L +     + K        +YDP CG+
Sbjct: 183 DAYEYLMRMYASNAGKSGGEYYTPQEVSELLTRLTVIGKTQVNK--------VYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +      +        +GQ+     + +C   M +  +  D       +I
Sbjct: 235 GSLLLKFAKVIGRENVRNG------FYGQDENITAYNLCRINMFLHDINFD-----DFDI 283

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL        + F   +SNPP+ KKW    + +          R+ P   L   S 
Sbjct: 284 AHGDTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPLLIND-----PRYAPAGVLAPTSK 338

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H    L       G AAIV     ++   A   E +IR++L++++ ++A++ L
Sbjct: 339 SDFAFILHSLAWLAAS----GTAAIVCFPGIMYRSGA---EKKIRQYLVDSNYVDAVIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T IAT + +L   K +        I+A+     + N  K    ++ +    IL
Sbjct: 392 PDNLFFGTTIATCIMVLKKSKPDTT---TVFIDASKECVKVTNSNK----LSQENIENIL 444

Query: 454 DIYVSRENGKF----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +Y  R + +     ++  +     Y    V   +      +   + +L A+I 
Sbjct: 445 KLYTDRVDVEHTVCVAKGAEIAAEDY-NFSVSTYVEPEDTREIIDIVQLNAEIR 497


>gi|268323495|emb|CBH37083.1| putative type I restriction-modification system DNA methylase (M
           protein) [uncultured archaeon]
          Length = 517

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 183/506 (36%), Gaps = 58/506 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E       L   +WK A+ L  +    ++  + L    L+ +  A E     +++    +
Sbjct: 5   EIKTEEEPLEKQLWKAADKLRKNIDAAEYKHIALGLIFLKYISDAFEGLYHKLQKGEGDY 64

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
            G++ +     K A   F+       S L +   +       +     I   +   K + 
Sbjct: 65  AGADPEDRDEYK-AENVFFVPEIARWSYLQARAKQPEIGKDVDFAMDAIEKENPLLKGVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   +        L  +      I L         ++ +++E+ +  F     +  
Sbjct: 124 PKVYARGNL----DPTSLGGLIDLVGNIALGDAKARSADILGHVFEYFLGEFALAEGKKG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR VV L   +L   +             ++DP CG+GG    +   VA    H 
Sbjct: 180 GQFYTPRSVVQLLVEMLEPYNG-----------RVFDPCCGSGGMFVHSEKFVAQ---HQ 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T  +C   + IR  +S   +  ++      +   D     +  Y
Sbjct: 226 GQVNDISIYGQESNQTTWRLCKMNLAIRSTDSSQVKWNNEG-----SFLNDAHKDLKADY 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF        D + K+      GR+  G+P   + +  ++ H    L    +  G
Sbjct: 281 VIANPPFNDSDW-SGDLLRKD------GRWNYGVPPTGNANYAWIQHFLYHL----SPSG 329

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +   VL+   L +  AG  E EIR+ L+E  LI+ IV LP  LF  T I   LW LS  K
Sbjct: 330 QTGFVLAKGALTSKTAG--EGEIRKELVEARLIDCIVNLPPKLFLNTQIPASLWFLSRNK 387

Query: 415 T----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                  R  ++  I+A ++   I    ++ R  + ++  +I + Y +  N       DY
Sbjct: 388 ANGKYRNRTDELLFIDARNMGHLI---NRRTREFSKEEIEKIAETYHNWRNPDG----DY 440

Query: 471 RTFG--YRRIKVLRPLRMSFILDKTG 494
           +          + R   + ++L    
Sbjct: 441 KDVKGFCNSASIERVKELDYVLTPGR 466


>gi|104774034|ref|YP_619014.1| Type I restriction-modification system, modification subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423115|emb|CAI97854.1| Type I restriction-modification system, modification subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 532

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/535 (21%), Positives = 207/535 (38%), Gaps = 63/535 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M E   + + L + ++  A+ L       ++ K IL     + L               +
Sbjct: 1   MAEENSTVS-LQSGLFAAADVLRSKMDANEYKKYILGIVFYKYLSDQQLYKLAEDAGKDD 59

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESY 103
            T    +E Y         LE      GY       Y+     + N         +  + 
Sbjct: 60  VTLDVAQETYEDNLEEGDLLEEVKSELGYMIGPEYTYTKILANANNGSFQLNQLKDAFTQ 119

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHL 162
           + S  ++ + +FEDFD  S             I      I +L     P   + + YE+L
Sbjct: 120 LESQGNSFEGLFEDFDLYSRQLGQNLQKQTDTIVGVIKAIGKLELVNTPGDTLGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F SE  + A +F TP++V  L   L L   D           T+YDP  G+G  L +
Sbjct: 180 ISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSNGMTVYDPAMGSGSLLLN 233

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +V +          +  +GQE+   T  +    M++ R++       ++ ++ G TL
Sbjct: 234 FKKYVPNSSR-------ITYYGQEINTSTFNLARMNMILHRVD-----LANQKLRNGDTL 281

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            +D    +   F   + NPP+ +KW+ DK  ++    +    ++G  LP  S     FL+
Sbjct: 282 DEDWPAEEITNFDSVVMNPPYSQKWKADKGFLD----DPRFSKYGV-LPPKSKADYAFLL 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ LP +LF  
Sbjct: 337 HGFYHLK----HSGAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLPANLFHS 389

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459
           T+I T + +L   K +     V  I+A+  +  +    K +  +  +   +IL  Y  R 
Sbjct: 390 TSIPTTIVVLKKDKQDR---SVLFIDASKEFEKV----KTQNKLRQEDIDKILKTYEERP 442

Query: 460 -ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +  K++ +  +         +  P    ++        ++     ++L  + Q 
Sbjct: 443 ADVEKYAHLASFDEIKENDFNLNIP---RYVDTFEPEPEIDLRDVAKELRDIDQQ 494


>gi|291534512|emb|CBL07624.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis M50/1]
          Length = 805

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/533 (21%), Positives = 223/533 (41%), Gaps = 57/533 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T+   ++  L N +++    L G     +F   + P    +R+    +       E+ L
Sbjct: 308 LTKEETTSRQLFNHLFEACNILRGPINQDEFKSYVTPVLFFKRISDVYDEEY----EEAL 363

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFE 116
            F G +++      +  +   +   ++   + S +    +   +        D    +F 
Sbjct: 364 EFSGGDVEYAEAEDMHSFVIPDGCHWNDVRMVSQDVGKAIVKAMTGIEKANPDTLSGVFS 423

Query: 117 DFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            FD ++   + +     L  + ++ S I++        +M + YE LI++F     + A 
Sbjct: 424 SFDDATWTDKNKLTDERLKNLIEHMSLIKVGNKNYSADIMGDSYEFLIKKFADMSKKNAG 483

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR +V L   LL           P    T+YDP CGTGG L +A++H+     ++ 
Sbjct: 484 EFYTPRTIVKLMVNLL----------DPKPGETVYDPACGTGGMLIEAIHHM-----NND 528

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----R 291
                   GQE    T A+    + +   +          ++QG TL   LF  K     
Sbjct: 529 RLAYGRIFGQENNLSTSAIARMNLYLHGAKDVQ-------VKQGDTLRNPLFLEKGKLKT 581

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K          + ++ + GR   G P  S     +L H+   ++   +
Sbjct: 582 FDCVLANPPFGMKKWGAG-----QFESDQYGRNMWGCPSDSSADFAWLQHMIKSMD---S 633

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR A+VL    LF+      E EIR  L+ +D +EA++ L + +F+ T ++  +  L+
Sbjct: 634 KNGRCAVVLPQGVLFHS---GKEGEIREQLVRSDKLEAVITLASGVFYSTGVSACILFLN 690

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRML-- 468
           N+K  + +G++ LI+ T+++T      + + II+ D  + +  +Y    +  +  +++  
Sbjct: 691 NKKEHKHKGRICLIDGTEIYTP----QRAQNIISPDNVKTLYKLYTDYVDVIEKCKIVTI 746

Query: 469 -DYRTFGYR---RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            D    G+    +  + +  + +   +K  LA  EA    RK     +   ++
Sbjct: 747 DDVEKGGFELSVKKYIEQKAKEAIPHEKVLLAYYEALTKVRKSEEKMRKLLIE 799


>gi|264677646|ref|YP_003277552.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208158|gb|ACY32256.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 448

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 149/456 (32%), Positives = 239/456 (52%), Gaps = 49/456 (10%)

Query: 132 LLYKICKNF--SGIELHPDT-----------VPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +L+ + + F    I L P+            + +  M  ++E LIR+F  E +E A +  
Sbjct: 1   MLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFNEENNEEAGEHF 60

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L T L+  P     K+      T+YDP CG+GG LT++ + + D     K   
Sbjct: 61  TPREVIKLMTNLVFIP----VKDQLPYPLTIYDPACGSGGMLTESQDFITDPEGEIKAKV 116

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +G+E+ PET+A+C + M+I+  + +       NI+ GSTL+ D F+G RF + L+N
Sbjct: 117 GVFLYGKEVNPETYAICKSDMMIKGNDPE-------NIKFGSTLATDDFSGTRFDFMLTN 169

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFG--------------PGLPKISDGSMLFLMHLAN 344
           PP+GK W+ D+ ++  E K+    RF               P +P+ SDG +LF+M +  
Sbjct: 170 PPYGKSWKSDQKSI-VEGKDVIDHRFQVNLSDYTEEDFDFYPAIPRSSDGQLLFMMEMVG 228

Query: 345 KLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           K++       G R A V + S LF G AGSGES IRR ++END +EAI+ LP +LF+ T 
Sbjct: 229 KMKRRNDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAIIQLPNNLFYNTG 288

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSREN 461
           I TY+W+LSN K ++ +GK+QLI+A++L+  +R N G+K     D+   QI  +Y+   N
Sbjct: 289 ITTYVWVLSNNKADQCKGKMQLIDASNLYQKLRKNLGEKNCEFTDEHIHQITQLYLEMPN 348

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
              S++ + R FGY ++ + RPLR++       +A L       + +P  Q     +   
Sbjct: 349 DGISKVFNNRDFGYYKVTIERPLRLAAQFSPERIATL-------RFTPGMQDIMEWVYDK 401

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
              ++Y    A +   E+    E  TL  K  K  +
Sbjct: 402 YGDEVYTSLKAHAEAIEAHLEREEITLSPKNRKELL 437


>gi|99078524|ref|YP_611782.1| type I restriction-modification system, M subunit [Ruegeria sp.
           TM1040]
 gi|99035662|gb|ABF62520.1| type I restriction-modification system; M subunit [Ruegeria sp.
           TM1040]
          Length = 499

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/536 (18%), Positives = 202/536 (37%), Gaps = 46/536 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T S   +    W   +   G    + +   +L    L+ +    +  +++    Y 
Sbjct: 1   MTPITQS--EINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYVSDVWKDHKASYAAHYP 58

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  + ++ E+F      SF                   L +   +     + +F+D
Sbjct: 59  DSPELVAAMMERETFKLPETASFDALHGRRHEPGNGERIDKALHAIEEANGSKLRDVFQD 118

Query: 118 FDFSSTIARLE--KAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F+S     E  K  +L  + ++F+   ++L P  V +  ++   YE+LI RF +   +
Sbjct: 119 ISFNSNKLGDEEQKNDILRHLLEDFAKTALDLRPSRVGNLDIIGGAYEYLISRFAATAGK 178

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+   L      + + GS
Sbjct: 179 KAGEFYTPAEVSELMARLV----------DPQPGDDICDPTCGSASLLMKCGRLIREGGS 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      GQE    T A+    + +   E + + +    I+     + D    + F
Sbjct: 229 -----KAYALFGQEAIGSTWALAKMNLFLHG-EENHQIEWGDTIRNPKLRTSD-DMLRHF 281

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF       + A     +  +  RF  G+P  + G   F++H+   L+     
Sbjct: 282 DVVVANPPFSLDKWGVESA-----EADKFARFRRGIPPKTKGDYAFILHMIETLKPKT-- 334

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+V+    LF G +   E +IR  L+E++L++A++ LP  LFF T I + + +   
Sbjct: 335 -GRMAVVVPHGVLFRGSS---EGKIRHKLIEDNLLDAVIGLPEKLFFGTGIPSAILVFRK 390

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            K ++    V  ++A+  + +  N    +  ++     +I+  + +R+   K++      
Sbjct: 391 DKADD---SVLFVDASREFVAGTN----QNALDMTLIEKIVATHQTRQTVEKYAYRATLA 443

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                   +  P  +    ++  +  +       KL          +   + +  Y
Sbjct: 444 EIIENDFNLNIPRYVDTFEEEEEIDLMAVRAERMKLKGEMAELEDRMEGYLQELGY 499


>gi|229120553|ref|ZP_04249798.1| Type I restriction-modification system, M subunit [Bacillus cereus
           95/8201]
 gi|228662838|gb|EEL18433.1| Type I restriction-modification system, M subunit [Bacillus cereus
           95/8201]
          Length = 530

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/568 (20%), Positives = 228/568 (40%), Gaps = 69/568 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------------EPT 51
           A L + ++  A++L      +D+   +L  T  + L   L                 + T
Sbjct: 2   AELNSKLFSAADNLRSKMDASDYKNYLLGLTFYKYLSDKLLEKVVEIADESLEEYNTQET 61

Query: 52  RSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
           ++ + ++ LA      DL E+ V   GY       +++ T  +       N  N     +
Sbjct: 62  QTQLYKELLADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQLNDLNKAFINL 121

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           ++  D    +F+D D  +        ++   + ++ K  + +++        V+ + YE 
Sbjct: 122 STKYDQFNGLFDDVDLKTKKLGSDDQQRNITITEVLKKLNDVDVLGHN--GDVIGDAYEF 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  + 
Sbjct: 180 LISQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++   T
Sbjct: 234 NIRNYI-------NYPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR-----LRNADT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 282 LNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLD----DSRFNRYGK-LAPKSKADFAFL 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF
Sbjct: 337 LHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFF 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +T      V  I+A++ +T  +N    +  ++ +   +I++ Y  R
Sbjct: 390 GTSIPTTVIILKKNRTTR---DVLFIDASNEFTKGKN----QNKLSKENIDKIVETYKKR 442

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E+  K++ +  +         +  P  +    ++  +       T + +    +     +
Sbjct: 443 EDVEKYAHVATFDEIKENDFNLNIPRYVDTFEEEVPVDMAIIGSTIKDIRKEKEKLESSL 502

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
              +    Y    AE         N  K
Sbjct: 503 YDMISSLQYDEENAEWIKGALEVFNREK 530


>gi|254670657|emb|CBA06718.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha153]
          Length = 512

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/531 (21%), Positives = 199/531 (37%), Gaps = 75/531 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IWK A+++ G     DF + +L     R +         A      Y A  
Sbjct: 2   QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSIDYAAMP 61

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  E     VKV GY  Y   +   +     +    L + +                
Sbjct: 62  DSIITPEIKDDAVKVKGYFIY-PGQLFCNIAAEAHQNEELNTKLKEIFTAIESSASGYPS 120

Query: 108 SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLI 163
             + K +F+DFD +S+       +K   L  + K  + ++    +     +  + YE+LI
Sbjct: 121 EQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDAYEYLI 180

Query: 164 RRFGSEVSEGAEDFMTPR--DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             + +   +   +F TP+   V  L   L +   + + K        +YDP CG+G  L 
Sbjct: 181 SNYAANAGKSGGEFFTPQSVSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLLL 232

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  +       +I+ G T
Sbjct: 233 QAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELGDT 281

Query: 282 LSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L+       K F   +SNPP+   W    D            RF P   L   S     F
Sbjct: 282 LTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDD-----RFAPAGVLAPKSKADFAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +LF
Sbjct: 337 ILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNLF 389

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++  
Sbjct: 390 YGTGIAVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLFAD 442

Query: 459 RENGKFSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           + +     +         +  GY  + V   +      +   + +L A+I+
Sbjct: 443 KAD--VPHIAQNAAQQTVKDNGY-NLAVSSYVEPEDTREIIDIKQLNAEIS 490


>gi|241895015|ref|ZP_04782311.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Weissella paramesenteroides ATCC 33313]
 gi|241871733|gb|EER75484.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Weissella paramesenteroides ATCC 33313]
          Length = 533

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/548 (18%), Positives = 201/548 (36%), Gaps = 53/548 (9%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES- 71
             IWK   +  G  + +++   I      + L    +   +              + E  
Sbjct: 9   TLIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQSWLNTQLRGETWENVWQQNPEKA 68

Query: 72  ---------FVKVAGYSFYNTSEYSLS--TLGSTNTRNNLESYIASFSDNAKAIFE---- 116
                    +V   G   ++  + +++      TN  ++L  +       AK  FE    
Sbjct: 69  ASFMQSKLGYVIQPG-DMFSDWQAAINIDQFNITNVADSLTHFNQGIQQGAKGTFEGIFD 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D D +S+            +    S I+         V+ ++YE+LI  F +     A +
Sbjct: 128 DMDLASSRLGSNTQTRTKTLMDWISLIDQIELDESSDVLGDLYEYLIGMFAANSGAKAGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   +L    + + +       +LYDP  G+G  L    +++ + G    +
Sbjct: 188 FYTPHEVSDIMARILTAGREDMAE------YSLYDPALGSGSLLLTTASYMHNDG----V 237

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLSKDLFTGKRFH 293
              +  +GQE+   T+ +    +++  +E +     +    N+     + + + + + F 
Sbjct: 238 RGAIKYYGQEVITTTYNLARINLMMHGVEYNDIHIHNADTLNMDWPDGVVEGVDSPRMFD 297

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPP+  KW              +  RF  G+   S     FL H    L+      
Sbjct: 298 AVMANPPYSLKW--------DNTNREDDPRFKSGIAPKSKADFAFLQHCLYHLKQ----D 345

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR AIVL    LF G A   E  IR+ LLEN  I A++ LP  +F  T I T + +L   
Sbjct: 346 GRMAIVLPHGVLFRGAA---EGRIRKQLLENHNISAVIGLPEKIFTNTGIPTIIMVLEKN 402

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           +T +    V  I+A+  +   +N       +       I++ ++ RE+  K++ +  +  
Sbjct: 403 RTSD---DVLFIDASKGFEKQKN----NNKLRAQDIDLIVETFLKREDADKYAHVATFDE 455

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
                  +  P  +    ++  +  ++      +++    +    +L+ M +        
Sbjct: 456 IKENDFNLNIPRYVDTFEEEEPVDLVKVSQEMTEVNQEIAATEQSLLQMMNELAVNDDNK 515

Query: 533 ESFVKESI 540
           +       
Sbjct: 516 DIINAAKN 523


>gi|294101456|ref|YP_003553314.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261]
 gi|293616436|gb|ADE56590.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261]
          Length = 493

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/520 (20%), Positives = 190/520 (36%), Gaps = 68/520 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
              + +W+ A+ L G+ + +D+  V+L    L+ +  + E   + +  +         + 
Sbjct: 6   EFEDKLWEMADKLRGNIQPSDYKDVVLGLIFLKYISDSFEEKYNELVAE-----EEGFEE 60

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSST 123
           +    VA   FY         +     +N  +S I    D+A    E  +          
Sbjct: 61  DRDAYVAENIFYVPPSARWDFIK----KNAKQSTIGQIIDDAMITIERENRNLKGVLPKN 116

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            AR E          +     L         ++  +YE+ + +F         +F TP  
Sbjct: 117 YARPELDKAKLGELVDLFSFNLGNKEAKAQDILGRVYEYFLGKF----GSSEGEFYTPPS 172

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++                 +YDP CG+GG    +   V +   H      +  
Sbjct: 173 IVKLLVGMIEPYKG-----------RVYDPCCGSGGMFVQSSRFVEE---HQGRKDDIHI 218

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE    T  +C   + IR ++       +   +   T   DL    R  Y L+NPPF 
Sbjct: 219 FGQEYTATTWRLCKMNLAIRGIDG------NLGARDADTFGNDLHKNIRADYILANPPFN 272

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                    V       +  R+  G+P   + +  ++ H+ +KL    +  G A  VL++
Sbjct: 273 ---------VSDYTLIPDDARWKYGIPPEKNANYAWIEHIISKL----SPTGVAGFVLAN 319

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             +        E+EIR+ ++E  L++ IV +P +LF+   I   LW +S  K E ++ K+
Sbjct: 320 GSMST--TTKAEAEIRKNIIEAGLVDCIVTMPPNLFYNVTIPVCLWFISK-KRENKQDKI 376

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--------FSRMLDYRTFG 474
             I+A  + T +    +K R  +D +  +I D Y +  + K        F +  D     
Sbjct: 377 LFIDARKMGTMV---TRKHREFSDGEIAKIYDTYHNWRDNKKEYKDIQGFCKSADIEEVR 433

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                +L P R   I +         +   R    L + F
Sbjct: 434 EHEY-ILTPGRYVGIEEVEDDGEPFEEKMTRLTGELAEMF 472


>gi|288926748|ref|ZP_06420659.1| type I restriction-modification system, M subunit [Prevotella
           buccae D17]
 gi|288336478|gb|EFC74853.1| type I restriction-modification system, M subunit [Prevotella
           buccae D17]
          Length = 515

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/524 (20%), Positives = 198/524 (37%), Gaps = 63/524 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAF 62
              +L   IWK A ++ G     DF + +L     R +        E    +V       
Sbjct: 6   QRDALQTAIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTNFIEAGDESVNYAQSPD 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------------- 109
                +++         F   S+  ++     N   NL + +A+  D             
Sbjct: 66  EVITPEIKDDAIKTKGYFIYPSQLFVNIAKDANGNPNLNTDLAAIFDAIESSASGYASEH 125

Query: 110 NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRR 165
           + K +F DFD +S        EK   L  + K    ++  + +     +  + YE LI  
Sbjct: 126 DIKGLFADFDTTSNRLGNTVEEKNKRLAAVIKGVESLDFSNFENNEIDLFGDAYEFLISN 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + +   +   +F TP++V  L   L +   D++ K        +YDP CG+G  L  A  
Sbjct: 186 YAANAGKSGGEFFTPQNVSSLIARLAMYGQDSVNK--------IYDPACGSGSLLLQAKK 237

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                             GQE+   T+ +    M +  +          +I  G+TL   
Sbjct: 238 QFDAHLIEEG------FFGQEINHTTYNLARMNMFLHNINYAK-----FDIALGNTLLNP 286

Query: 286 LFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
            +  ++ F   +SNPP+   W    D            RF P   L   S     F++H 
Sbjct: 287 QYGDQKPFDAIVSNPPYSVNWVGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVLHA 341

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L       GRAAIV      + G A   E +IR++L++N+ +E +++LP +LF+ T+
Sbjct: 342 LSYLSAR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFYGTS 394

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           IA  + +LS  KT+    + Q I+A         +     ++      +I++I+ ++E  
Sbjct: 395 IAVNILVLSKHKTDT---QTQFIDAGS--EDFFKKETNNNVLLPKHIDRIVEIFGTKEEV 449

Query: 463 KF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++ +  +D            V   + +    +   + +L  ++ 
Sbjct: 450 QYIATSVDNGKIAENDYNLSVSSYVEVEDKREVIDIVKLNTEVA 493


>gi|237755861|ref|ZP_04584457.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691972|gb|EEP60984.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 506

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/472 (21%), Positives = 180/472 (38%), Gaps = 56/472 (11%)

Query: 1   MTEFTG--SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M + T   +   L   +WK A+ L  +    ++  V+L    L+ +  A E     +++ 
Sbjct: 1   MAKKTKVKNNEPLEAKLWKAADTLRKNIDAAEYKHVVLGLVFLKYISDAFEKLYEELKKD 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNA 111
             A      +      +A   FY   +   S +             +     I   +   
Sbjct: 61  PYADPEDKDEY-----LAKNVFYIPEKARWSEIKKHAKNPEIGKILDEAMDEIERENPQL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         I  L   GL       F  IEL         ++  ++E+ + +F    
Sbjct: 116 KGVLPKVYSKGNIDPLSLGGL----IDLFDNIELEAVKEKSADILGYVFEYFLGQFALAE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP+ VV L   ++                 ++DP CG+GG    +   V   
Sbjct: 172 GKKGGQFYTPKSVVELLVEMIQPFKG-----------RVFDPCCGSGGMFVQSEKFVL-- 218

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +H      +  +GQE    T  +C   + IR ++S   +  S+      +L  D     
Sbjct: 219 -AHQGKIDDISIYGQESNQTTWKLCKMNLAIRHIDSSQVKWNSEG-----SLLNDAHKDL 272

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF +K    +             R+  G+P   + +  ++ H    L    
Sbjct: 273 KADYILANPPFNQKEWGREYLEND-------PRWQYGIPPAGNANYAWIQHFIYHL---- 321

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G+A  VL+   L + +    E EIR+ L+E DL+E IV LP  LF    I   LW +
Sbjct: 322 SNKGKAGFVLAKISLTSKQ--KEEYEIRKNLIEADLVECIVNLPGKLFLNAPIPVCLWFI 379

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +  K  +R+G++  I+A D+   I    ++ R++  +  R+I D Y   + G
Sbjct: 380 NKNK--KRKGQILFIDARDMGELI---NRRLRVLRPEDIRKIADTYHEWQKG 426


>gi|325066640|ref|ZP_08125313.1| type I restriction-modification system, M subunit [Actinomyces oris
           K20]
          Length = 519

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/533 (21%), Positives = 201/533 (37%), Gaps = 69/533 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M++ T  AA L   IW+ A DL G     DF   +L F   R +   L    +A   +  
Sbjct: 1   MSKETERAA-LHQTIWRVANDLRGSLDGWDFKAYVLGFLFYRFISENLTEYINAGEREAG 59

Query: 59  -------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASF- 107
                  +L+   +    E  V+  G+       +      +    N    L     S  
Sbjct: 60  DPDFDYRFLSHADAEGAREGIVEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFKSIE 119

Query: 108 --------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                     + + +F+D D +ST       ++   L ++ +    ++L           
Sbjct: 120 ASATGTGSESDLRGLFDDVDVNSTKLGRTVAQRNDKLTRLMQAIGDLDLSYGESSIDTFG 179

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+  + S   +   +F TP++V  +   + +    ++          +YDP CG+
Sbjct: 180 DAYEYLMTMYASNAGKSGGEFFTPQEVSEVLARITVMGKTSVN--------RVYDPACGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +                GQE+   T+ +C   M +  +          +I
Sbjct: 232 GSLLLKFAKVLGKDNVRGG------FFGQEINLTTYNLCRINMFLHDINF-----ADFSI 280

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+       + F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 281 AHGDTLTDPAHWDDEPFEAIVSNPPYSTKWIGKDDPALIND-----PRFSPAGVLAPKSK 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L +     G AAIV     LF G A   E++IR++L+E + ++A++ L
Sbjct: 336 ADLAFTMHMLSWLAV----DGTAAIVEFPGVLFRGGA---EAKIRQYLVEYNYVDAVIQL 388

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF TNI T + +L   K   +   V  ++A+  +    N+ K    ++ + ++ IL
Sbjct: 389 PPDLFFGTNIRTCVIVLKKSK---QDNNVLFVDASKQFVREDNKNK----LSAENQKMIL 441

Query: 454 DIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +    R +    + ++           + V   +      ++  +  L A I 
Sbjct: 442 ETLAKRVDIDHVAALVSAEAIRENGFNLSVSSYVEAEDTREEVDIVELNARIK 494


>gi|146302128|ref|YP_001196719.1| type I restriction-modification system, M subunit [Flavobacterium
           johnsoniae UW101]
 gi|146156546|gb|ABQ07400.1| type I restriction-modification system, M subunit [Flavobacterium
           johnsoniae UW101]
          Length = 515

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 116/530 (21%), Positives = 201/530 (37%), Gaps = 64/530 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT  T   A L   IWK A ++ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-STAQRAELLAKIWKIANEVRGAVDGWDFKQFVLGTLFYRYISENFTNYIEAGDDSID 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      +++         F   S+  ++   + NT  NL + + +          
Sbjct: 60  YASLSDDVITPEIKDDAIKTKGYFIYPSQLYVNIAKTANTNPNLNTDLKNIFTAIESSAN 119

Query: 108 ----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
                +  K +F DFD +S+        K   L  + K    +   + +     +  + Y
Sbjct: 120 GYPSEEAIKGLFADFDTTSSRLGNTVENKNSRLASVLKGVEELNFGNFEDNKIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP  V  L   L +   + + K        +YDP  G+G  
Sbjct: 180 EILISNYAANAGKSGGEFFTPVHVSKLIAQLAMHKQEKVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  D              GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNIALG 280

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL    +   K F   +SNPP+  KW  D D            RF P   L   S    
Sbjct: 281 DTLHHPHYIDDKPFDAIVSNPPYSIKWIGDDDPTLINDD-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E I+++  +
Sbjct: 336 AFVLHALSYL----SSKGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETIISVAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  KT+      Q I+A+        +     ++ D    +I++++
Sbjct: 389 LFYGTSIAVTILVLSKHKTDTT---TQFIDAS--GEDFFKKVTNNNMMTDTHIDKIMELF 443

Query: 457 VSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
            S+ +    ++ +D            V   +       KT +  L  ++T
Sbjct: 444 DSKVDVEHVAKSIDNTKIAENDYNLSVSSYVEPKDNRVKTNIVELNKEVT 493


>gi|327330728|gb|EGE72474.1| type I restriction-modification system, M subunit
           [Propionibacterium acnes HL097PA1]
          Length = 522

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/534 (19%), Positives = 196/534 (36%), Gaps = 70/534 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T      + L   IW+ A DL G     DF   +L     R +   L    +    +   
Sbjct: 4   TTKEMQRSELHKTIWRIANDLRGSVDGWDFKTYVLGMMFYRFISENLTDYINEGEWRAGD 63

Query: 62  FGG-----SNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
                   SN D +   +        F   S+  ++         NL   +         
Sbjct: 64  TDFNYCNLSNADAKDIFEEMVTEKGFFIFPSDLFVNVRARAAQDENLNETLEGVFRNIEG 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMS 156
                    + K +F D D +S       A    K+ K    I +L   +  D    +  
Sbjct: 124 SAAGTPSERDLKGLFADLDVNSPRLGATVAQRNRKLVKVLDAIGDLPLGSFEDNSIDLFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L++ + S+  +   ++ TP++V  +   + +     + K        +YDP  G+
Sbjct: 184 DAYEYLMQMYASQAGKSGGEYFTPQEVSEVLARIAVGDKKRIGK--------VYDPAVGS 235

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +           +   +GQE+   T+ +    M +  +  +       +I
Sbjct: 236 GSLLLKFAKLL-------GPENVKGFYGQEINLTTYNLARINMFLHGINYEQ-----FDI 283

Query: 277 QQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+  +   K  F   +SNPP+  KWE   + +          R+ P   L   S 
Sbjct: 284 VLGDTLTNPMHRDKEPFEAIVSNPPYSTKWEGSDNPLLINDD-----RYAPAGVLAPKSK 338

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L       G AA+V     L+   A   E +IR++L++N+ ++ ++ L
Sbjct: 339 ADLAFTMHILSSLAT----NGTAAVVEFPGVLYRVGA---ERKIRKYLIDNNYVDTVIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF T IAT + +L   K +     V  ++A+  ++ + N+ K    +    + +I+
Sbjct: 392 PPDLFFGTTIATCVIVLKKSKKD---NSVLFVDASAEFSRVGNKNK----LLSANQDRIV 444

Query: 454 DIYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITW 504
           ++  +R E      ++             V   +      +   +  L A+I  
Sbjct: 445 ELVSARSEEPHVCTLVHNEDIAGNDYNLAVSSYVEKKDTREVVDIKELNAEIAH 498


>gi|116669552|ref|YP_830485.1| N-6 DNA methylase [Arthrobacter sp. FB24]
 gi|116609661|gb|ABK02385.1| N-6 DNA methylase [Arthrobacter sp. FB24]
          Length = 527

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/480 (21%), Positives = 184/480 (38%), Gaps = 65/480 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EK 58
              +L   +W  A+ L G+ + +++  V+L    L+ +    E  R A+         E+
Sbjct: 8   KVKTLEQRLWDTADALRGNQEPSEYKHVVLGLVFLKYISDRFEERRRAIETSLSDPNSEE 67

Query: 59  YLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR--------NNLESYIASFSD 109
           Y+       + LE   + A ++ +   E +       N +        +     I   + 
Sbjct: 68  YIPNEARRSEFLEDRDEYASHNVFWVPELARWGYLQDNAKLPKIGQQLDQAMDLIEKENP 127

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFG 167
             + +         + +     L          I      D   D V+  +YE+ + +F 
Sbjct: 128 IIRGVLPRNYGREGLDKSRLGQL----VDLIGSIGFTESDDHGSDDVLGRVYEYFLGQFA 183

Query: 168 SEV-SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A  F TPR VV     +L                 +YDP CG+GG    +   
Sbjct: 184 GKETGKDAGAFYTPRSVVKTLVEMLEPF-----------HGRVYDPACGSGGMFVQSAEF 232

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   G        +  +GQE    T  +    + +R +E+D         +   + ++DL
Sbjct: 233 VTAHGGER---TDISVYGQEFTDTTWKLAKMNLALRGIEAD------LGDRSADSFTQDL 283

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               R  + ++NPPF      +    +         R+  G P   + +  ++ H  + L
Sbjct: 284 HRDLRADFIIANPPFNVSNWWNAKLADD-------PRWKYGTPPEGNANFAWVQHFLHHL 336

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               +  G A  VLS+         SGE EIRR L+E DL++ IVA+P  LFF T I   
Sbjct: 337 ----SPKGTAGFVLSNG--SLSSKSSGEGEIRRKLVEADLVDCIVAMPDKLFFNTGIPVS 390

Query: 407 LWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSREN 461
           LW +S  +       R+G+V  I+A+ L    R E ++ R+++DD    +I   Y +  N
Sbjct: 391 LWFISKERHGNGHRARQGEVLFIDASKLG---RMENRRLRVLDDDRDIAKIAGAYHAWRN 447


>gi|296188045|ref|ZP_06856437.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|296047171|gb|EFG86613.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 529

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 215/555 (38%), Gaps = 67/555 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------RS 53
            + +  ++ + +W  A +L G    +++   IL F   R L    E            + 
Sbjct: 1   MSNNLQTITSKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEKYLVGNNVIDVEKG 60

Query: 54  AVREKYLAFGGSNIDLESFVKV----AGYSFYN--TSEYSLSTL-GSTNTRNNLESYIAS 106
                         DL+ +++      GY+     T E  ++ +  +    ++ ++   +
Sbjct: 61  ESINDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIPSDYQTIFDN 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ NA          + IF D +   +    +  E+A  L  I K   GIE   D   D 
Sbjct: 121 FNKNAELNKEAVKDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++         E       LYDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTSGV-----EKSDEFFNLYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +            +   GQEL   T+ +    +++  +  +     +
Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHDVSYNNMVLNN 287

Query: 274 KNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +  +          G    + F   ++NPP+  KW+ D+  + K+ +  + G+  P   
Sbjct: 288 ADTLESDWPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSDYGKLAPA-- 344

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H    L    N  G  AIVL    LF G A   E +IR+ L+E + ++ 
Sbjct: 345 --SKADYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLIEKNYLDT 395

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LF+ T+I T + +    +  +    +  I+A++ +   +N    +  +ND+  
Sbjct: 396 VIGLPANLFYGTSIPTTILVFKKNRKTK---DILFIDASNDFEKGKN----QNNLNDENI 448

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I++ +  R++  K++ +            +  P  +    ++  +   E +    + +
Sbjct: 449 DKIINTFKERKDVDKYAHVASIEEIKENEFNLNIPRYVDTFEEEAPIDLEEVNKQLEQDN 508

Query: 509 PLHQSFWLDILKPMM 523
                   +I + + 
Sbjct: 509 KEIAELEAEINEQLK 523


>gi|239994805|ref|ZP_04715329.1| type I site-specific deoxyribonuclease [Alteromonas macleodii ATCC
           27126]
          Length = 530

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 111/523 (21%), Positives = 195/523 (37%), Gaps = 75/523 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------------CALE 49
             +L   +W  A  + G+    +F   IL F   + L                    A++
Sbjct: 6   KKALEKQLWNIANSMRGNMSADEFRDYILGFIFYKYLSERMDIYADELLKADDIKFDAID 65

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS------EYSLSTLGSTNTRNNLESY 103
            T    +E   A     ID   +       F+  +      E+ L  L          + 
Sbjct: 66  ETTDEGQEYLSAIQEEAIDHLGYFLKPSELFHVLAQKGEAGEFILQPLTEVLNHIEQSTM 125

Query: 104 IASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             +  D+   +F+D D +S         K  L+ KI  +   I+         V+ + YE
Sbjct: 126 GTAAEDDFNGLFDDIDLTSNKLGKTEKAKNELVSKILAHLDAIDFLHHETDIDVLGDAYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F S   + A +F TP  V  L   L+      L        +++YDPTCG+G  L
Sbjct: 186 YLIGMFASGAGKKAGEFYTPPMVSKLLAKLVTMGKTKL--------KSVYDPTCGSGSLL 237

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V + G            GQE  P T+ +    M++  +          +IQQ  
Sbjct: 238 LRVAKEVKEVGK---------YCGQESNPSTYNLARMNMILHGVHY-----RQFDIQQDD 283

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL       +RF   ++NPPF   W   +  +  E +  + G+  P     S     F+ 
Sbjct: 284 TLETPHHIEERFEAVVANPPFSANWSASQGFLSDE-RFQDYGKLAP----KSKADFAFVQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ ++L    +  G  A+VL    LF G A   E  IR+ L++N + ++ ++ LP ++F+
Sbjct: 339 HMVHQL----DENGTMAVVLPHGVLFRGAA---EGHIRKHLIKNKNYLDVVIGLPANIFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L      + +  +  I+A+  +    N    +  I ++   +IL+    R
Sbjct: 392 GTSIPTCILVLKKH--RQHKDNILFIDASQNFGKATN----QNYIREEDLARILEAVDER 445

Query: 460 EN------GKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGL 495
           E        KF+ +             +  P  +    D+  +
Sbjct: 446 EQLAPEKANKFAYVASISEIAENNDFNLNIPRYVDTFEDEEEI 488


>gi|308270339|emb|CBX26951.1| hypothetical protein N47_A09800 [uncultured Desulfobacterium sp.]
          Length = 910

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 209/551 (37%), Gaps = 81/551 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   + + L N +    +DL G    +++ + I     L+R     +  ++ +R +  
Sbjct: 2   MVKTKLTLSRLENLLLTACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRQAELRTELA 61

Query: 61  AFGGSNID----LESFVKVAGYSFYNTSEYSLSTLG---------------------STN 95
             G S  D    L      +G  FY       +                          N
Sbjct: 62  GKGMSEEDITIALNDPDNYSGKYFYVPERARWNQAWDEEVIKDGEIKIIHHPALKHLKEN 121

Query: 96  TRNNLESYIASFSDNAKAIFED----FDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTV 150
               L   + +  D      +D     +F+  I  R      L    +NF  I L  +  
Sbjct: 122 VGTMLNKALEAIEDANIDALQDVLKGINFNRKIGQRSLDDDTLADFIQNFEKIPLKDEDF 181

Query: 151 P-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               ++   YE LI+ F     + A +F TP +VV +   +            P    ++
Sbjct: 182 EFPDLLGAAYEWLIKYFADSAGKKAGEFYTPVEVVRVCVEIC----------DPQEGMSI 231

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+GG L    +++ +CG     P  L  +GQE    T ++C   ML+  +     
Sbjct: 232 YDPTAGSGGMLIQTRDYLQECGGD---PGELSLNGQEKIGTTWSICKMNMLLHGIS---- 284

Query: 270 RDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +I+Q  T+ + L        KRF   L+NPPF + +      ++KE K    GRF
Sbjct: 285 ---HADIRQADTIREPLHLDETNELKRFDRVLANPPFSQNY------IKKELKFP--GRF 333

Query: 325 GPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              +P K     ++F+ H+ + L+      GR A V+    LF    G  E   RR+ +E
Sbjct: 334 PVMMPEKGKKADLMFVQHMLSVLK----HDGRLATVMPHGVLFR---GGEERAARRYFIE 386

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              +EAI+ LP++LF+ T I   + +++      R   V  IN    +     EGK +  
Sbjct: 387 KGYLEAIIGLPSNLFYGTGIPACIMVMNKHGAASR-DHVLFINGDREY----REGKAQNH 441

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGL-ARLE 499
           +  +   +I+  Y +  +   ++R +             + R +  +   +   + A L 
Sbjct: 442 LRPEDIDKIVHAYRNGLDIPDYARKVPVTEIAAEDYNCNIRRYVDNAPPSEPHDVRAHLH 501

Query: 500 ADITWRKLSPL 510
             +   +++ +
Sbjct: 502 GGVPIAEINAM 512


>gi|219870605|ref|YP_002474980.1| Type I restriction-modification system methyltransferase subunit
           [Haemophilus parasuis SH0165]
 gi|219690809|gb|ACL32032.1| Type I restriction-modification system methyltransferase subunit
           [Haemophilus parasuis SH0165]
          Length = 562

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 110/565 (19%), Positives = 203/565 (35%), Gaps = 89/565 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +         L   +WK A+ L       ++  ++L    L+ +  +    +  ++++Y 
Sbjct: 21  LANQQAFLNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYT 80

Query: 61  A-----------------FGGSNIDLESFVKVAGYSFYNTSEYSLS----TLGSTNTRNN 99
                                 N +LE     A  + +   + +       +   N  + 
Sbjct: 81  DPTSDFYLDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDK 140

Query: 100 LESY-----IASFSDNAKAIFE--DFDFSSTIARLE----KAGLLYKICKNFSGIELHPD 148
           +        IA+  D+A    E  +    + I R+        +L  +   FS       
Sbjct: 141 IWDEKTFKGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSDTNFTRP 200

Query: 149 TVPD--------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           T+           ++ ++YE+ + +F     +    + TP+ +V L   +L         
Sbjct: 201 TLDGKPISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKG---- 256

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                   +YDP  G+GGF       + +   H      +   GQE  P T  +    M 
Sbjct: 257 -------RIYDPAMGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMA 306

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNG 319
           IR +E D             T S      K+  + ++NPPF  K W  +  A +      
Sbjct: 307 IRGIEFD------FGKGNADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQD------ 354

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              R+  G+P   + +  +L H+   L    +  GR A++L++  +      + E EIR+
Sbjct: 355 --PRWQYGIPPEGNANFAWLQHMIYHL----SPNGRMALLLANGSM--SSNTNNEGEIRK 406

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +L+ DL+EA++ALP+ LF  T I   +WIL+  K   R+G+V  I+A  L      + +
Sbjct: 407 NILKADLVEAMIALPSQLFTNTQIPACIWILNKNKA--RKGEVLFIDARQLGYM---KDR 461

Query: 440 KRRIINDDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
             R    D   ++ D Y S +          F               VL P R     ++
Sbjct: 462 VLRDFTADDIAKVADTYHSWQQSADYQNIPAFCYTASLDEIAQNDF-VLTPGRYVGAAEQ 520

Query: 493 TGLARLEADITWRKLSPLHQSFWLD 517
                  A+   ++L+ L Q  +  
Sbjct: 521 EDDGVPFAEK-MQELTALLQQQFQQ 544


>gi|169350757|ref|ZP_02867695.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552]
 gi|169292620|gb|EDS74753.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552]
          Length = 546

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 118/554 (21%), Positives = 212/554 (38%), Gaps = 70/554 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51
           M E   S   L + +W  A+ L       ++   +L     + L  +          +  
Sbjct: 13  MAEAENS-KDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLINDEK 71

Query: 52  RSAVREKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------- 99
            S+++E    +  +  D    E   ++     Y        T  +   RNN         
Sbjct: 72  PSSLKEALEEYREALKDESADELMEEIKSACHYVIEPDLTYTYFADAARNNSFNREYLQK 131

Query: 100 LESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             + I   +     +F D D  S        +++  +  + K     +L        ++ 
Sbjct: 132 AFNNIEQSNPLFADLFTDIDLYSNRLGTGDQKQSDTISNLIKEIDKADLL--NTDADILG 189

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP+ V  + T +      A+  +      ++YDP  G+
Sbjct: 190 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKI------AIAGQENKKGLSVYDPCMGS 243

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +  D       P  +  +GQEL   T+ +    M +  +  +     ++ +
Sbjct: 244 GSLLLNAKKYSKD-------PRNIKYYGQELMTSTYNLARMNMFLHGVVPE-----NQKL 291

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  T +   F   L NPP+  KW      ++ E        FG  L   S  
Sbjct: 292 RNGDTLDADWPTDEETNFDMVLMNPPYSAKWSAAAGFLQDE----RFSDFGV-LAPKSKA 346

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 347 DYAFLLHGLYHLK----NSGTMAIVLPHGVLFRGVA---EGKIREKLLRSGNIYAVIGLP 399

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +    N+GKK+  + D+    ++D
Sbjct: 400 ANLFYNTSIPTCIVVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIESVID 452

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS-PL 510
           +Y+ RE   K S +  +         + + R +      +   +  L  ++         
Sbjct: 453 LYMKRETVDKESYLASFEDIEKNAFNLNIPRYVDNFEKEEPVDINALLTEMKQTDDEIQK 512

Query: 511 HQSFWLDILKPMMQ 524
            Q+ ++ +L  +  
Sbjct: 513 VQNDFVSLLHELTS 526


>gi|114567766|ref|YP_754920.1| type I restriction-modification system, M subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338701|gb|ABI69549.1| type I restriction-modification system, M subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 891

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 111/546 (20%), Positives = 207/546 (37%), Gaps = 67/546 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     + + L +F+ K A+ L G    ++F + I     ++RL    +  R  + +K  
Sbjct: 1   MANEKITLSQLEHFLLKAADILRGKMDASEFKEFIFGMLFIKRLSDEFDLKRQKLIKKDF 60

Query: 61  AFGGSNIDL-ESFVKVA---GYSFYNTSEYSLS-----------------TLGSTNTRNN 99
           A      DL    ++     G +F+                              N  N 
Sbjct: 61  AHLKDQPDLIHELLEDKTSYGETFFVPVRARWHESWVDENGDTVPALKDLKYDIGNMLNK 120

Query: 100 LESYIASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKI-CKNFSGIEL---HPDTVPDRV 154
             + I   +D    +   + DF++   + +     +K    +F+  +    + +     +
Sbjct: 121 AIAAIEEENDALAGVLKNNIDFNAVKGKTKIPDQKWKDLIDHFNQPQFVLVNDNFEFPDL 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   YE+LI+ F     +   +F TP +VV L   L            P    T+YDPT 
Sbjct: 181 LGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVQLT----------KPEAGNTIYDPTV 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GGFL  +  +V + G     P  L   GQ+      ++C   M++  +    R  +  
Sbjct: 231 GSGGFLIQSYQYVEEQGQD---PNDLALFGQDSNGTVWSICNMNMILHNI---TRFTIEN 284

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SD 333
                  L  D    + F   L+NPPF + + +               RF    P+    
Sbjct: 285 GDTLEDPLILDKGKIRTFERVLANPPFSQNYSRANMKFS--------NRFWEWCPETGKK 336

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             ++F+ H+   L+      G  A ++    LF    G  E  IR  L+ +D+IEAI++L
Sbjct: 337 ADLMFVQHMLASLKP----DGHMATIMPHGVLFR---GGKEKLIREILINDDVIEAIISL 389

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P  LF+ T I   + + +  K +  + KV  INA   +     EGK +  +  +   +I 
Sbjct: 390 PPGLFYGTGIPACILVCNKSKPDSLKNKVLFINADREYA----EGKAQNKLRPEDIEKID 445

Query: 454 DIYVSR-ENGKFSRMLDYRTF---GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLS 508
            ++ ++ E  K+SR++            + + R +  +   +   + A L   I   +++
Sbjct: 446 FVFTNKLEIPKYSRLVTKEEIVEPHDYNLNIRRYVDNTPEPEPEDVQAHLIGGIPGTEVT 505

Query: 509 PLHQSF 514
              + F
Sbjct: 506 ARAEDF 511


>gi|309808312|ref|ZP_07702218.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168459|gb|EFO70571.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 398

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 86/432 (19%), Positives = 167/432 (38%), Gaps = 49/432 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L       GE EIR+ ++E+DLIE I++LP  LF+  +I   LW +S 
Sbjct: 322 NGKIGLVLANGAL--SSQNCGEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISK 379

Query: 413 RKTEERRGKVQL 424
            K ++ +  + +
Sbjct: 380 NKNKKEKQSLLM 391


>gi|154507566|ref|ZP_02043208.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797200|gb|EDN79620.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC
           17982]
          Length = 545

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 196/535 (36%), Gaps = 78/535 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGGSN 66
            A L   IW+ A DL G     DF   +L F   R +   L    +A  RE  +A GG+ 
Sbjct: 26  RAELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTP 85

Query: 67  IDLESF----------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI------ 104
            +  +F                +      F   S+   +         NL   +      
Sbjct: 86  EEAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAAGDENLNETLSYAFRF 145

Query: 105 -------ASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRV 154
                  +    + + +F+D D +ST       ++   L KI      + L         
Sbjct: 146 IENSARGSGSESDLRGLFDDVDVNSTKLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQIDA 205

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP++V  +   L LD    +          +YDP  
Sbjct: 206 FGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSDVA--------RVYDPCA 257

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +    S           GQE+   T+ +C   M +  +        + 
Sbjct: 258 GSGSLLLKFAKLLGPSSSR-------QYFGQEINLTTYNLCRINMFLHDVNFS-----NF 305

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G TL++      + F   +SNPP+  KW    D            RF P   L   
Sbjct: 306 DIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVGKDDIALIND-----PRFAPAGVLAPK 360

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F MH+ + L       G AAIV     L+ G A   E +IRR+L+EN+ + A++
Sbjct: 361 SKADLAFTMHMLHWL----AEDGTAAIVEFPGVLYRGGA---EGKIRRYLVENNFVHAVI 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP DLFF T IAT + +L   + +     V  ++A+       N+ +    +  + +++
Sbjct: 414 QLPPDLFFGTTIATCIIVLKKARPDH---SVLFVDASAECVREGNKNR----LTAENQQR 466

Query: 452 ILDIYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           IL +   R+     + ++           + V   +      ++  +  L   I 
Sbjct: 467 ILSLVSERQAVDHVAALVSIDDIKDNDWNLSVSSYVEPEDTREQVDIVELNTRIA 521


>gi|224437017|ref|ZP_03657998.1| type I restriction-modification system specificity subunit
           [Helicobacter cinaedi CCUG 18818]
 gi|313143489|ref|ZP_07805682.1| type I restriction-modification system [Helicobacter cinaedi CCUG
           18818]
 gi|313128520|gb|EFR46137.1| type I restriction-modification system [Helicobacter cinaedi CCUG
           18818]
          Length = 500

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 191/536 (35%), Gaps = 67/536 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++  A+ L  +    ++  ++L    L+ +  + E     +  +  
Sbjct: 1   MAKVKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
                +        +A   F+   +   STL S           +     I   +   K 
Sbjct: 60  DAEDKD------EYIAKNIFFVPQDSRWSTLLSKAKSPQIGKDLDYALDLIEKDNPQLKG 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         +     +  L  +      I L+ +   D ++ +I+E+ +  F     + 
Sbjct: 114 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSD-ILGHIFEYFLGEFALSEGKK 168

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP+ VV L  A+L   +             ++DP CG+GG    +   V +   H
Sbjct: 169 GGQFYTPKSVVELLVAMLEPYNG-----------RVFDPCCGSGGMFVQSERFVRE---H 214

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R+++S   +  S+      +   D     +  
Sbjct: 215 QGKISDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +             R+  G P  ++ +  ++ H  + L       
Sbjct: 270 FIIANPPFNATDWGSEALENDV-------RWQYGTPPSTNANYAWISHFIHHL----APK 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  VL+   L      S E +IR+ L+E++LIE IV LP  LF  T I   LW +   
Sbjct: 319 GRAGFVLAKGSL--TSNTSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 376

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRML 468
           K          I+A  L   I    +K RI+N D   +I + Y        +NG +S +L
Sbjct: 377 KPH---NNTLFIDARSLGELI---NRKNRILNKDDIDKITETYHKWQKAQEQNGDYSDIL 430

Query: 469 DY-----RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            +     +        VL P R   + +       E + T  K     Q     IL
Sbjct: 431 GFCKSVSKEEMANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEERIL 486


>gi|262039562|ref|ZP_06012861.1| type I restriction-modification system, M subunit [Leptotrichia
           goodfellowii F0264]
 gi|261746440|gb|EEY33980.1| type I restriction-modification system, M subunit [Leptotrichia
           goodfellowii F0264]
          Length = 526

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 116/533 (21%), Positives = 203/533 (38%), Gaps = 70/533 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++     + L   IW  A+++ G     DF + +L     R +   +         E   
Sbjct: 8   SKEGIQRSELHRKIWAIADEVRGAVDGWDFKQYVLGILFYRFISENMVTFFNSAEHEAGD 67

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
                  ++   +  D           F   S+   + + +     NL + +A+      
Sbjct: 68  LEFDYSKISDEEAERDFRPNTVEDKGFFILPSQLFENVVKNAAKNENLNTDLANIFKSIE 127

Query: 108 --------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
                    ++ K +FED D +S        EK   L  I    S I        D    
Sbjct: 128 ASAIGFASENDIKGLFEDVDTTSNRLGGTVAEKNKRLTDILTGISEINFGKFEENDIDAF 187

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  + S   +   +F TP+ V  L   L+++   ++ K        +YDPTCG
Sbjct: 188 GDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMEGKTSINK--------VYDPTCG 239

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L        +              GQE+      +    M +  +  +     + +
Sbjct: 240 SGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNINYN-----NFS 288

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL   L + ++ F   +SNPP+  KW  D D      +     RF P   L   S
Sbjct: 289 IKRGDTLLNPLHSEEKPFDAIVSNPPYSIKWIGDGDPTLINDE-----RFAPAGKLAPKS 343

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ I+ ++ 
Sbjct: 344 YADYAFIMHSLSYL----SSKGRAAIVCFPGIFYRKGA---EQTIRKYLVDNNFIDCVIQ 396

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +++  KTE    KV  I+A+  +    N      I+ +     I
Sbjct: 397 LPENLFFGTSIATCILVMAKNKTE---NKVLFIDASKEFKKETN----NNILEEKNIENI 449

Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
           ++ + +R + + FSR +D            V   +      +   +  L  +I
Sbjct: 450 VEEFKNRSDKEYFSRYVDKSEIEENDYNLSVSTYVEKEDTREIIDIKVLNKEI 502


>gi|331085151|ref|ZP_08334237.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407934|gb|EGG87424.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 531

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 110/567 (19%), Positives = 206/567 (36%), Gaps = 65/567 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------- 56
                L   +W  A+ L G     ++   +L     + L  +       +          
Sbjct: 2   ADTKDLLQVLWSGADVLRGKMDANEYKTYLLGLVFYKYLSDSYLEKAYDLLNDEAPKTLE 61

Query: 57  --EKYLAFGGSNIDLESFVKVAGYSFYNTSE----------YSLSTLGSTNTRNNLESYI 104
             +K       + D E  ++    S + T E           + +   S        ++I
Sbjct: 62  EAQKVYEEAYDSEDAEDLLEELKSSLHYTLEPGMTYVCMLRDAKNNCFSREKLQAAFNHI 121

Query: 105 ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               +    +F D D  S        +++  +  + K   G +L        V+ N YE+
Sbjct: 122 EEADELFNGLFSDVDLYSNRLGTGDQKQSDTIADVLKVLEGADLI--HAKGDVLGNAYEY 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP     +   + L   +            +YDP  G+G  + 
Sbjct: 180 LIGQFASETGKKAGEFYTPHGPAQILCRIALLGQEG------KKGLQVYDPCMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              N+  +       P  +  +GQE+ P T+ +    M + R+  +     +++++   T
Sbjct: 234 SCKNYSEE-------PDYIKYYGQEIMPSTYNLARMNMFLHRVHPE-----NQHLRNADT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L  D  T +   F     NPP+  KW     A E   ++     +G  L   S     FL
Sbjct: 282 LDADWPTDEDTEFDVVTMNPPYSAKWS----AAEGFKQDERFMDYGGKLAPKSKADYAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L       G  AIVL    LF    G+ E EIR+ LLEN  I A++ LP ++F+
Sbjct: 338 LHGFYHLRQS----GTMAIVLPHGVLFR---GASEGEIRKILLENGSIYAVIGLPANMFY 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +       KK+ ++ D+    +L++Y +R
Sbjct: 391 NTSIPTCIIVLKKHREGR---DVLFIDASSQFVK----EKKQNVMQDEHIDHVLELYKNR 443

Query: 460 E-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +   K + +  Y         +  P  +    ++  +   +     ++     +     +
Sbjct: 444 KPVDKEAYLASYEDIKNNDFNLNIPRYVDSTEEEPEVDIKDLTRRMKETESELKESNQSL 503

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEA 545
           L  + +           + E I+  E 
Sbjct: 504 LDMLKELQGNSSETNEALTEFIQFLEE 530


>gi|312872245|ref|ZP_07732318.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092329|gb|EFQ50700.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
          Length = 398

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 169/432 (39%), Gaps = 49/432 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +    F+   E    T+             +N    I S +   K 
Sbjct: 59  ---GDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L   D+            +YD  CG+GG    +   +    +
Sbjct: 172 SGGEFYTPSSIVKTLVSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIR---A 218

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE   +T  +    M IR +++D          Q  T + DL    + 
Sbjct: 219 HSGNCGSISIYGQEANADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +  ++         R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----AP 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I++LP  LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALSSQS--CGEGEIRQKIIEDDLIEGIISLPPKLFYSVQIPVTLWFISQ 379

Query: 413 RKTEERRGKVQL 424
            K ++ +  + +
Sbjct: 380 NKNKKEKQSLLM 391


>gi|303242501|ref|ZP_07328981.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302589969|gb|EFL59737.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 510

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 104/502 (20%), Positives = 197/502 (39%), Gaps = 48/502 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   +   +W+  +   G    + +   +L    ++ +    +  +  + +K+ 
Sbjct: 2   MEIKKYTQEEVNGTLWRACDTFRGKVDSSVYKDYVLVMLFIKYVSDIYKEHKEELMKKFD 61

Query: 61  AFGGS---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +  E FV     +F    +              L           + +F++
Sbjct: 62  NDEEMVKRQMSYERFVLDEISTFDYIYDKRNQPNIGEIINTALAHVEEENKTKLRGVFKN 121

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEG 173
            DF+S        E+  +L  + ++F  ++L P   V + V+ N YE++I  F S+  + 
Sbjct: 122 IDFNSEAVLGNTKERNAMLKHLLEDFKDLDLRPSRLVGEDVIGNAYEYMIANFASDAGKK 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP +V  L + L+           P     +YDPTCG+G  L  A N +    + 
Sbjct: 182 GGEFFTPSEVSELLSRLV----------KPKENDRIYDPTCGSGSLLIKAFNKIPSGKAQ 231

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +GQE   +TH++C   M +  ++ D R      +     L  D     +F 
Sbjct: 232 --------IYGQERNGQTHSLCRMNMFLHSID-DARIAWGDTLSNPLHLENDKL--MKFQ 280

Query: 294 YCLSNPPFGKKWE-------KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             ++NPPF             +    + E       RF  G+P  S G   F++H+ + L
Sbjct: 281 VVVANPPFSLDKWAMGFVGEGNDKEFKMEEGLDPYKRFSWGVPPSSKGDYAFVLHMLHSL 340

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GGR  +VL    LF    G+ E +IR+ +++ +L++A++ LP++LFF T I   
Sbjct: 341 ----AEGGRMGVVLPHGVLFR---GASEGKIRQKIIDMNLLDAVIGLPSNLFFGTGIPAC 393

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +    +    R  V  I+A+    +   +GK +  + +   ++I D Y   EN  KF+
Sbjct: 394 ILVFRQNR---DRDDVLFIDAS--GDNYYEKGKNQNKLREADIKRIEDAYEKYENIEKFA 448

Query: 466 RMLDYRTFGYRRIKVLRPLRMS 487
            +            +  P  + 
Sbjct: 449 YVATKNEIIENDYNLNIPRYVD 470


>gi|307637539|gb|ADN79989.1| typeI restriction-modification system DNA-methyltransferase subunit
           M [Helicobacter pylori 908]
 gi|325996129|gb|ADZ51534.1| Type I restriction-modification system/DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
          Length = 581

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 207/551 (37%), Gaps = 69/551 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--------KY 59
              L N IWK A +L G     DF + +L     R +   +    +             Y
Sbjct: 70  RNELHNTIWKVANELRGSVDGWDFKQYVLGVLFYRYISENIARYHNEYMRNNNFDPSFDY 129

Query: 60  LAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASF----------- 107
            +      ++E    +    F+   S    + L +     +L   + +            
Sbjct: 130 ASLSDEEAEIERKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFTEIEKSSLGT 189

Query: 108 --SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEH 161
              +N K +F D D +S     +   +   L KI +   G++L         V  + YE+
Sbjct: 190 PSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGDAYEY 249

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG+G  L 
Sbjct: 250 LMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCGSGSLLL 301

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                + D              GQE+   T+ +C   M +  +          +I  G T
Sbjct: 302 QFSKVLGDKNVLKG------YFGQEINLTTYNLCHINMFLHDINYSK-----FHIAHGDT 350

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           L        + F   +SNPP+  KW  D + +     N E       L   +   + F M
Sbjct: 351 LLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLL---MNDERFSKAGALAPKNAADLAFTM 407

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L    +  G AAIV     L+ G A   E +IR +L++ + I+ ++ALP +LFF 
Sbjct: 408 HMLSYL----SNQGAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIALPENLFFG 460

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           TNIAT + +L   K ++       I+A+  +        K+  +    R +IL  Y  R+
Sbjct: 461 TNIATCILVLKRNKKDDT---TLFIDASKEFVK----EGKKNKLKAHNREKILQTYTERK 513

Query: 461 -NGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               FS + +            V R +      +   +  L+ +I+        QS   +
Sbjct: 514 AIKHFSALANIEKIQENDYNLSVNRYVEQEDTKEIIDIKALQIEISQI---VKKQSALRN 570

Query: 518 ILKPMMQQIYP 528
            L+ +++++  
Sbjct: 571 SLESIIKELEA 581


>gi|269468493|gb|EEZ80151.1| type I site-specific deoxyribonuclease [uncultured SUP05 cluster
           bacterium]
          Length = 437

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 191/472 (40%), Gaps = 70/472 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFG 63
              L   +W  A +L G     +F   IL F   + L   +    + +  +    YL+  
Sbjct: 6   KKKLEQKLWDIANELRGKMDADEFRDYILGFIFYKYLSEKILSYANKLLAEDGITYLSLD 65

Query: 64  GSNID--------LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASF------- 107
             + D         E  V+  GY    +  +  ++  G+ +T N +   +          
Sbjct: 66  EDSADGAEYLDAIKEEAVEKLGYFLKPSELFGEIAKRGNGDTNNFILEDLTQILRNVEQS 125

Query: 108 ------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                  D+   +FED D +ST        K  L+ K+  +   I    D +   V+ + 
Sbjct: 126 TMGYESEDDFGHLFEDLDLTSTKLGRTEEAKNTLIAKVLFHLDQINFDLDNIESDVLGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  +   ++      L        +++YDPTCG+G 
Sbjct: 186 YEYLIGQFAAGAGKKAGEFYTPQQVSKVLAKIVTTGKSKL--------KSVYDPTCGSGS 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      V D  +          +GQEL   T+ +    M++  +          +I+Q
Sbjct: 238 LLLRVAKEVDDVSN---------FYGQELNRTTYNLARMNMILHDIHYRK-----FDIKQ 283

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             T+       +RF   ++NPPF   W  +         +    ++G  L   +     F
Sbjct: 284 EDTIEHPQHIDERFEAVVANPPFSAHWSANPL----HMSDDRFSQYGK-LAPKTKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+ ++L    +  G  AIVL    LF G A   E  IR++L+E+ + ++A++ LP ++
Sbjct: 339 VQHMIHQL----DENGTMAIVLPHGVLFRGAA---EGHIRKYLIEDKNYLDAVIGLPANI 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           F+ T+I T + +   +K  E    +  I+A++ +  ++     +  + D+  
Sbjct: 392 FYGTSIPTCVLVF--KKCREDSSNILFIDASNEFEKVKA----QNYLTDENV 437


>gi|312865348|ref|ZP_07725576.1| type I restriction-modification system, M subunit [Streptococcus
           downei F0415]
 gi|311099459|gb|EFQ57675.1| type I restriction-modification system, M subunit [Streptococcus
           downei F0415]
          Length = 533

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 125/573 (21%), Positives = 219/573 (38%), Gaps = 68/573 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46
           M+E   ++ SL   +W +A+ L       D+   +L     + L                
Sbjct: 1   MSEI-QTSQSLYQALWNSADILRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAKTMEQET 59

Query: 47  -----ALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
                ALE  RS  A  E +        D  S+      +F    +   +          
Sbjct: 60  QDLDQALELYRSYYADEETHADLIEVTKDEMSYAIEPDLTFTALVQEINAGTFQLEHLAQ 119

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    +  + +FED D  S        ++   +  + K  + +++        ++ 
Sbjct: 120 GFRNIEQDDELFENLFEDIDLYSKKLGATPQKQNQTIANVMKELAVLDVAGHA--GDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T + L   +           +LYDPT G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIALMGRED------KQGFSLYDPTMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +   GQEL   T  +    M++  +        ++ +
Sbjct: 232 GSLLLNAKKYSHK-------PNTVAYFGQELNTSTFNLARMNMILHGV-----PIENQKL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               TL +D  T +   F   L NPP+  KW  D   +    ++     FG  L   S  
Sbjct: 280 HNADTLDEDWPTQEPTNFDAVLMNPPYSAKWSADAGFL----QDPRFSPFGK-LAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+     GG  AIVL    LF G A   E  IR+ LLE   I+ ++ LP
Sbjct: 335 DFAFLLHGYFHLKQ---DGGVMAIVLPHGVLFRGNA---EGAIRKHLLEEGAIDTVIGLP 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   + E     V  I+A+  +T  +N    + I+ D    +IL+
Sbjct: 389 ANIFFNTSIPTTVIILKKDRQER---DVYFIDASKEFTKGKN----QNIMEDSHLEKILE 441

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y  R++  KF+ +  +         +  P R     ++  +A L   +   K +     
Sbjct: 442 TYRKRKDSDKFAHLASFEEIEENDFNLNIP-RYVDTFEEEEVAPLTEIVANIKTTNQAIE 500

Query: 514 FWLDILKPMMQQIYPYGW-AESFVKESIKSNEA 545
                L  M+ Q+      ++  +++ +K  + 
Sbjct: 501 EKTSELMAMLGQLKGTNPESQKELEDFLKDLKL 533


>gi|304438089|ref|ZP_07398032.1| type I restriction-modification system DNA-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368862|gb|EFM22544.1| type I restriction-modification system DNA-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 525

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 112/534 (20%), Positives = 201/534 (37%), Gaps = 73/534 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRS 53
           +     A L   IW+ A DL G     DF + +L     R +   L         E   +
Sbjct: 4   KKEVERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREAGDT 63

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
                 L    +  + ++ V++ G+ F   SE   + L    T  +L   +         
Sbjct: 64  DFDYAALPDDEAMAEKDNIVQILGF-FIPPSELFQNVLARAETNESLNETLEQVFRHIES 122

Query: 108 -------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMS 156
                   D+   +F++FD +S+       E+   L K+      + L H          
Sbjct: 123 SATGTPSQDDLTGLFDEFDVNSSKLGATVKERNAKLTKLLSGVGAMRLGHYQNNTIDAFG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+L+R + S   +   ++ TP++V  L T L +     + K        +YDP CG+
Sbjct: 183 DAYEYLMRMYASNAGKSGGEYYTPQEVSELLTRLTVIGKTQVNK--------VYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +      +        +GQ+     + +C   M +  +  D       +I
Sbjct: 235 GSLLLKFAKVIGRENVRNG------FYGQDENITAYNLCRINMFLHDINFD-----DFDI 283

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL        + F   +SNPP+ KKW    + +          R+ P   L  +S 
Sbjct: 284 AHGDTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPLLIND-----PRYAPAGVLAPVSK 338

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F+MH    L       G AAIV     ++   A   E +IR++L++++ ++A++ L
Sbjct: 339 SDFAFIMHALAWL----ANNGTAAIVCFPGIMYRSGA---ERKIRQYLVDSNYVDAVIQL 391

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T IAT + +L   K +        I+A+     + N  K    ++ +    IL
Sbjct: 392 PDNLFFGTTIATCIMVLKKSKPDTT---TVFIDASKECVKVTNSNK----LSQENIENIL 444

Query: 454 DIYVSRENGKF----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +Y  R + +     ++  +     Y    V   +      +   + +L A+I 
Sbjct: 445 KLYTDRVDVEHTVCVAKGAEIAAEDY-NFSVSTYVEPEDTREIIDIVQLNAEIR 497


>gi|162447450|ref|YP_001620582.1| type I site-specific restriction-modification system, M
           (modification) subunit [Acholeplasma laidlawii PG-8A]
 gi|161985557|gb|ABX81206.1| type I site-specific restriction-modification system, M
           (modification) subunit [Acholeplasma laidlawii PG-8A]
          Length = 495

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 195/519 (37%), Gaps = 66/519 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             + +W+ A+ L G+ + +++  VIL    L+ +  +       ++  Y       ++ +
Sbjct: 8   FEDKLWQMADKLRGNIESSEYKHVILGLVFLKYISDSFTERYEEIKANY-----PGMEED 62

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTI 124
                +   F+   +     + S   +    S I    DNA    E  +           
Sbjct: 63  RDAYESENVFFVPKDARWEYIKSQAKQ----STIGQIIDNAMVQIEKENASLKGVLPKNY 118

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           AR E          +     +         V+  +YE+ +++F         +F TP  +
Sbjct: 119 ARPELDKTRLGELIDLFSFNVGSKEARAKDVLGRVYEYFLKKF----GTTEGEFYTPPAI 174

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++   +             +YDP CG+GG    +   V +          +  +
Sbjct: 175 VKLLVNMIEPYNG-----------RVYDPCCGSGGMFVQSAKFVEEHAGKIGN---ISIY 220

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE    T  +    + IR +++      +   + G T + D     R  Y L+NPPF  
Sbjct: 221 GQEYVATTWRLAKMNLAIRGIDA------NLGERDGDTFTNDQHKTLRADYILANPPFNI 274

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K    +  +          R+  G P  ++ +  ++ H+ +KL    +  G A  VL++ 
Sbjct: 275 KDWGQQHLIGD-------SRWQWGTPPATNANYAWISHMISKL----SPRGIAGFVLANG 323

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L   R  S E EIR+ +LE  L++ IVA+P+ LF+  +I   LW +S  K   R+ KV 
Sbjct: 324 SLSTSR--SEEYEIRKKILEEGLVDCIVAMPSQLFYDVSIPVSLWFVSKNKNG-RKDKVL 380

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYR 476
            I+A  +      E +K R + D++  +I   Y +  + K       F +          
Sbjct: 381 FIDARKMGYM---ETRKHRELTDEESEKIYSTYHAWRDDKDYQDIDGFCKSATLEEIRSH 437

Query: 477 RIKVL--RPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
              +   R + +  + D       + +    +LS L + 
Sbjct: 438 DYVLTPGRYVGIEEVEDDGIPFEEKMEKLTLELSELFEE 476


>gi|268611918|ref|ZP_06145645.1| type I restriction-modification system methylation subunit
           [Ruminococcus flavefaciens FD-1]
          Length = 534

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 219/568 (38%), Gaps = 66/568 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------PTRSAV 55
             ++  L + +W  A+ L G     ++   +L     + L                  ++
Sbjct: 4   NENSKDLLSVLWAGADILRGKMDANEYKNYLLGIVFYKYLSDTFLTHVYDLLNNEKPESM 63

Query: 56  REKYLAFGG--SNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNL--------ESY 103
            E   A+    S  D E  ++    S++ T   E + + L    ++N           ++
Sbjct: 64  AEAQAAYEEVYSTEDAEELLEDIKESYHYTIEPELTYTKLAEAASKNAFQREMLKKAFNH 123

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +         +F D D  ST       +++  + ++ K  +  +L        V+ + YE
Sbjct: 124 VEQSDPIFANLFADVDLYSTRLGSGEQKQSATVAEVVKKINEADLLNH--EGDVLGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F SE  + A +F TP+ V  + T + +   +            +YD   G+G  L
Sbjct: 182 YLIGQFASETGKKAGEFYTPQAVSQILTRVAIQGQED------KQGLLVYDAAMGSGSLL 235

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +A             P  +   GQEL   T+ +    M +  ++ +     ++ ++   
Sbjct: 236 LNARKFSHK-------PDYIRYFGQELSTTTYNLARMNMFLHGVDPE-----NQTLRNAD 283

Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL  D  T +   F   L NPP+  KW   +  +  + +  + G   P     S     F
Sbjct: 284 TLDADWPTDEETDFDMVLMNPPYSAKWSAAQGFL-NDSRFSDYGVLAP----KSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AI+L    LF G A   E +IR+ L+++  I A++ LP +LF
Sbjct: 339 LLHGFYHLK----NTGTMAIILPHGVLFRGAA---EGKIRQKLIDSGAIYAVIGLPANLF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T +  L   +       +  I+A+  +      GKK+  ++ +    I+++Y +
Sbjct: 392 YNTSIPTTIIALKKNRDGR---DILFIDASQQFVK----GKKQNSMSPENIDHIIELYTA 444

Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           R++  K + +  Y         +  P  +     +  ++  +    +  +S    +   D
Sbjct: 445 RQDVEKEAHLATYEEIKANDYNLNIPRYVDTFEQEEQISLSDLASEFSDISAEMDTAATD 504

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545
           ++  M +        ++ + + +K  E 
Sbjct: 505 LITQMGELTAADADTKNELADLMKVLEG 532


>gi|313204423|ref|YP_004043080.1| type II restrictioN-modification system, m subunit [Paludibacter
           propionicigenes WB4]
 gi|312443739|gb|ADQ80095.1| type I restriction-modification system, M subunit [Paludibacter
           propionicigenes WB4]
          Length = 546

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 111/547 (20%), Positives = 201/547 (36%), Gaps = 77/547 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKY------- 59
              L   +W  A  L G     +F   +L F  +R L    E   +  + + Y       
Sbjct: 6   QQQLGKTLWDIANQLRGSMNADNFRDYMLSFLFMRYLSDNYEDVAKKELGQDYPEVTSDI 65

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLST-----------LGSTN 95
                      + +  +  D+E F K      +     +Y  S+           L  T 
Sbjct: 66  LKKLKATSALEIWYNENAADIEEFEKQMRRKVHYVIQPKYLWSSIYEMARTQNGELLHTL 125

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDR 153
            +        SF    + +F + + +S            ++C   + IE  +   +    
Sbjct: 126 KKGFDYIENESFESTFQGLFSEINLNSDKLGKTYEERNAELCNIITKIEQGIVKFSKDTD 185

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE LI +F ++  + A +F TP+ +  + ++++              +  + D  
Sbjct: 186 ILGDAYEFLIGQFAADSGKKAGEFYTPQQISTILSSIVTLDSQNPAAGKKKKLDKVMDLA 245

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L +  N +   G       I   +GQE    T+ +    ML+  +     +D  
Sbjct: 246 CGSGSLLLNVRNQLGKHG-------IGKIYGQEKNITTYNLARMNMLLHGV-----KDTE 293

Query: 274 KNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +I  G TL  D              F   ++NPPF  +WE  +         GE  RF 
Sbjct: 294 FHIHHGDTLLNDWDILNEMNPAKKMEFDAVVANPPFSLRWEPSEAM-------GEDFRFK 346

Query: 326 -PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GL   S     FL+H  + L       G  AI+L    LF G A   E  IR  LL++
Sbjct: 347 NYGLAPKSAADFAFLLHGFHFL----AQEGTMAIILPHGVLFRGGA---EERIRTKLLKD 399

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR--R 442
             I+ ++ LP++LFF T I   + +L   K  +    V  INA++ +   + + + R   
Sbjct: 400 GNIDTVIGLPSNLFFSTGIPVCILVLKKCKKFD---DVLFINASEYFEKGKRQNRLRDGE 456

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLE 499
               +  R+I++ Y  R E  ++SR +           + + R +  +    +  L  + 
Sbjct: 457 EGEPNDIRKIVETYQFRTEEERYSRRVSMEEIVKNDYNLNISRYVSTAVTAKEIDLNAVN 516

Query: 500 ADITWRK 506
             +   +
Sbjct: 517 ETLVDLE 523


>gi|15611853|ref|NP_223504.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4155366|gb|AAD06378.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 528

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 207/549 (37%), Gaps = 67/549 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YL 60
           +   L N IWK A +L G     DF + +L     R +   +    +    K      Y 
Sbjct: 18  ARNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKIDPNFDYA 77

Query: 61  AFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASF------------ 107
           +      ++     +    F+   S    + L +     +L   + +             
Sbjct: 78  SLSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFNEIEKSSLGTP 137

Query: 108 -SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
             +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L
Sbjct: 138 SEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGDAYEYL 197

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  + S   +   ++ TP++V  L   + L   + + K        +YDP CG+G  L  
Sbjct: 198 MAMYASNAGKSGGEYFTPQEVSELLAKITLHNQENINK--------VYDPCCGSGSLLLQ 249

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + D              GQE+   T+ +C   M +  +          +I  G TL
Sbjct: 250 FSKVLGDKNVLKG------YFGQEINLTTYNLCRINMFLHDINYSK-----FHIALGDTL 298

Query: 283 SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   +SNPP+  KW  D + +     N E       L   +   + F MH
Sbjct: 299 LDPKHEDDEPFDAIVSNPPYSTKWIGDNNPLL---MNDERFNKAGALAPKNAADLAFTMH 355

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + + L    +  G AAIV     L+   A   E +IR +L++ + I+ ++ALP +LFF T
Sbjct: 356 MLSYL----SNQGAAAIVEFPGVLYRSGA---EKKIREYLVKENFIDCVIALPENLFFGT 408

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
           NIAT + +L   K ++       I+A+  +        K+  +    R +IL  Y+ R+ 
Sbjct: 409 NIATCILVLKKNKKDDT---TLFIDASKEFLK----EGKKNKLKAHNREKILQTYIERKA 461

Query: 461 NGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
              FS + +            V R +      +   +  L  +I+        QS   + 
Sbjct: 462 IKHFSALANIEKIQENDYNLSVNRYVEQEDTKEIIDIKALNGEISQI---VKKQSVLRNS 518

Query: 519 LKPMMQQIY 527
           L+ +++++ 
Sbjct: 519 LESIIKELE 527


>gi|170025887|ref|YP_001722392.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|169752421|gb|ACA69939.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
          Length = 910

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 110/544 (20%), Positives = 213/544 (39%), Gaps = 59/544 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVRE 57
           +T    +   LA  IW++A  +    +  ++   IL F   + L          +    E
Sbjct: 43  LTGLIVNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPE 102

Query: 58  KYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
              A    + D   +V+      +A  + ++T   S S    +N R+ L ++    S   
Sbjct: 103 DIKALNEEDADTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTY 162

Query: 112 KAIFEDFDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           K +FE   F++    L K           +  +      I ++ +   D V+  IYE+L+
Sbjct: 163 KKLFEGI-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLL 220

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP +V  L + ++        +        +YDPT G+G  L + 
Sbjct: 221 EKFAANAGKKAGEFYTPHEVSVLMSNII------AHELKHKDTIKIYDPTSGSGSLLINI 274

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                    + K    +  + QEL+  T+ +    +++R +++   +  + +  +     
Sbjct: 275 GEAFE---KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPY 331

Query: 284 KD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            D       +        +SNPP+ + W+           +    RF  GL   +     
Sbjct: 332 FDDSDPLGSYYALHVDAVVSNPPYSQNWDPSFK-----DSDPRYSRF--GLAPKTKADFA 384

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF    G  E +IR+ L+E + I+ ++ LP ++
Sbjct: 385 FLLHDLYHLK----PDGIMAIVLPHGVLFR---GGEEGQIRKQLIEQNHIDTVIGLPANI 437

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + IL   K + +   V +++A+  +        K   +     ++I D  +
Sbjct: 438 FFGTGIPTVILIL---KQKRQNTDVLVVDASKHFMK----EGKNNKLQASDIKRITDAVI 490

Query: 458 SRE-NGKFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQS 513
           +RE   KFS+++  +        + + R +  S       L A +   I   +++ LH  
Sbjct: 491 NRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIPNSEIAELHNF 550

Query: 514 FWLD 517
           +   
Sbjct: 551 WQAF 554


>gi|237751421|ref|ZP_04581901.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
 gi|229372787|gb|EEO23178.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
          Length = 534

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 117/534 (21%), Positives = 213/534 (39%), Gaps = 74/534 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-- 63
               +L + IWK  ++L G     DF   +L F   R +   L    +A   +       
Sbjct: 15  TQRTALHSTIWKIVDELRGSVDGWDFKMYVLGFLFYRFISENLAEHINANMRECGEIDFD 74

Query: 64  ---------GSNIDLESFVKVAGYSFYNTSEYSLSTLG-------------STNTRNNLE 101
                      + D++  +      F   SE  ++ L              S   RN   
Sbjct: 75  YTHLSDEEIIKDNDIKENIINQKGFFIMPSELFINVLQTHKSDTTNLNATLSNVFRNIEY 134

Query: 102 SYIASFSDN-AKAIFEDFDFSSTIA-----RLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           S I + S+N  K +F D D +S+        +++   LYK+ K  S ++L          
Sbjct: 135 SSIDTKSENDFKGLFNDIDVNSSANLGERSLIKRNERLYKVMKEISKLDLDYSDNAIDAF 194

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + Y  L+R +     +   +F TP++V HL   L+     ++ K        +YD  CG
Sbjct: 195 GDAYVCLMRMYAGSAGKSGGEFFTPQEVSHLLARLVSYGKQSVNK--------VYDSACG 246

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +   L      +      +        +GQE+ P ++ +C   M++  +  +     + +
Sbjct: 247 SSSLLLQFAKVLGKNNVKNG------FYGQEINPTSYNLCRINMILHNVGYE-----NFD 295

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G T  +      + F   +SNPP+  KW  D + +          RF P   L    
Sbjct: 296 ISLGDTFLEPKHEDDEPFDAIVSNPPYSIKWAGDSNPLLIND-----PRFAPAGVLAPKF 350

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH+ + L    +  G  AI      L+ G A   E +IR++L++N+ I+ ++ 
Sbjct: 351 YADLAFVMHMLSWL----SPSGTCAIAAFPVVLYRGGA---EKKIRKYLVDNNFIDCLIQ 403

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF TNI T + +L   K   +  KV  I++++L++ + N+     I+  +    I
Sbjct: 404 LPPNLFFGTNIVTSIIVLKKNK---QNNKVLFIDSSELFSKVTNK----NILEINHIITI 456

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++ Y  REN   FS ++++           V   +      +   +  L A+I+
Sbjct: 457 VEAYAKRENKEHFSSLVNFEEIQANDYNPSVSSYVEQKDTREVIDIKTLNAEIS 510


>gi|24379344|ref|NP_721299.1| type I restriction-modification system DNA methylase [Streptococcus
           mutans UA159]
 gi|24377269|gb|AAN58605.1|AE014930_7 type I restriction-modification system DNA methylase [Streptococcus
           mutans UA159]
          Length = 534

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 115/541 (21%), Positives = 206/541 (38%), Gaps = 74/541 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRS 53
           + +     L   IW  A+++ G     DF + IL     R +   +         E    
Sbjct: 5   KESQQRQELHQKIWAIADNVRGAVDGWDFKQYILGILFYRFISENMSDYFDRAEHEAGDP 64

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
             R   L+   +  D +         F   S+   + + + +T  NL + +A        
Sbjct: 65  DFRYADLSDEEAEEDFKPDTVEEKGFFILPSQLFENIVKTASTNENLNTDLAKIFKKIEE 124

Query: 108 -------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
                      K +F+D D +S        EK   L  I    +G++       D     
Sbjct: 125 SAIGKDSEHAIKGLFDDVDTTSNRLGGSVKEKNKRLSDILTGIAGLDFGTFEENDIDAFG 184

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  + S   +   +F TP+ V  L   L++   + + K        +YDPTCG+
Sbjct: 185 DAYEYLISNYASNAGKSGGEFFTPQTVSKLLAQLVMVGKEHINK--------VYDPTCGS 236

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L                       GQE+    + +    M +  +  +     + +I
Sbjct: 237 GSLLLQMKKQFETHILEEG------FFGQEINMTNYNLARMNMFLHNINYN-----NFDI 285

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           ++G TL        + F   +SNPP+  KW  D D      +     RF P   L   S 
Sbjct: 286 RRGDTLLNPQHLYERPFDAIVSNPPYSIKWIGDADPTLINDE-----RFAPAGKLAPKSK 340

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F+MH  + L    +  GRAAIV      + G A   E  IR++L++N+ +EA++AL
Sbjct: 341 ADFAFIMHSLSHL----SNKGRAAIVCFPGIFYRGGA---EKTIRQYLIDNNFVEAVIAL 393

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT-------SIRNEGKKRRIIND 446
           P +LF+ T+IATY+ +L+  K E+   K   I+A+                    +I+N 
Sbjct: 394 PDNLFYGTSIATYILVLAKNKPED---KTLFIDASSDEKSTVSGKNKFYETVTNGKILNP 450

Query: 447 DQRRQILDIYVSRENGKF-SRMLDYRTFGY---RRIKVLRPLRMSFILDKTGLARLEADI 502
                I++++ ++++  + ++++D           + V   +      +   +  L  +I
Sbjct: 451 KNIEAIVELFKNKKDVDYEAKLVDNNLIAEENDYNLSVSTYVEKRDTREIINIDELNKEI 510

Query: 503 T 503
            
Sbjct: 511 A 511


>gi|229105723|ref|ZP_04236352.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-28]
 gi|228677612|gb|EEL31860.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-28]
          Length = 497

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 99/535 (18%), Positives = 201/535 (37%), Gaps = 69/535 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLAFGGSNIDLE 70
            A DL G     +F   IL     R L   +E     + ++                DL 
Sbjct: 1   MANDLRGQMDAYEFKDYILGLIFYRYLSEKVEHRAEQLLKEDNITFSQAWTDKEYKEDLA 60

Query: 71  SF--------VKVAGYSFYNTSE--------YSLSTLGSTNTRNNLESYIASFSDNAKAI 114
            +        ++         SE        + +  L +        +      ++ + +
Sbjct: 61  EYLVGELGYVIEPQYLFSNFVSEIEKGVNGNFDVELLQNGVKAIEASTMGTDSQEDFQNL 120

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           F+D D +S+        ++ L+ K+  N + I    D V   ++ + YE++I +F +   
Sbjct: 121 FDDMDLTSSKLGRTVESRSKLIAKVIINIAEIPFLQDDVEIDILGDAYEYMISQFAANAG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   ++      +        R++YD TCG+G  L           
Sbjct: 181 KKAGEFYTPQQVSKVLAKIVTAGKSEI--------RSVYDGTCGSGSLLLRVGKEAK--- 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +   +GQE    T+ +    ML+  +          +I+   TL +     +R
Sbjct: 230 -------VYKYYGQEKVSTTYNLARMNMLLHDIPYQ-----RFDIKNADTLEEPQHLDER 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+  KW  D    + E  +         L   S     F+ H  ++L    +
Sbjct: 278 FEAIVANPPYSAKWSADDKFKDDERFSAYSK-----LAPKSKADFAFIQHFIHQL----D 328

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410
           G G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I T + + 
Sbjct: 329 GNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTCILVF 385

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
             +K  +    V  I+A++ +   +N    +  ++D+   +I+  Y++RE   K+S    
Sbjct: 386 --KKCRKHDEHVVFIDASNEFEKGKN----QNHLSDEHVEKIVSTYLNRETIDKYSYAAT 439

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                     +  P  +    ++  +         +++         ++     +
Sbjct: 440 LDEIKENDYNLNIPRYVDTFEEEEPVDLEAVAKRLQEIDAEIAKVDEELAAYFKE 494


>gi|241888682|ref|ZP_04775989.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864705|gb|EER69080.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
          Length = 526

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 212/553 (38%), Gaps = 73/553 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
             A L   IW+ A+D+ G     DF + IL     R +   +     R+      + F  
Sbjct: 13  QRAELHRKIWEIADDVRGAVDGWDFKQYILGILFYRFISENMRDYFNRAEREAGAVDFNY 72

Query: 65  SNIDLESFVKV-------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------- 107
           + +  +  +K            F   S+   + + +    +NL + + +           
Sbjct: 73  AELSDDEALKYFKPGTVKEKGFFILPSQLFENIVKTATKEDNLNAKLDTIFKEIEASAIG 132

Query: 108 ---SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
               ++ K +F D D +S        EK   L  I    S +   + +        + YE
Sbjct: 133 SASEEDFKGLFRDVDLTSDRLGESVPEKNMKLTSILVGISELNFGNFEDNHIDAFGDAYE 192

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  + S   +   +F TP+ V  L   +++D  D + K        +YDPTCG+G  L
Sbjct: 193 YLISNYASNAGKSGGEFFTPQTVSRLLAKIVVDGKDKINK--------VYDPTCGSGSLL 244

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                          +      +GQE+    + +    M +  +  +       +I++G 
Sbjct: 245 LQMRKF-------ECVEIEEGYYGQEINMTNYNLARMNMFLHNVNYN-----DFSIKRGD 292

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL       +R F   +SNPP+  KW  D D      +     RF P   L   S     
Sbjct: 293 TLLNPYHGEERPFDAIVSNPPYSIKWIGDADPTLINDE-----RFAPAGKLAPKSYADYA 347

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ ++ ++ LP +L
Sbjct: 348 FIMHSLSYL----SSKGRAAIVCFPGIFYRKGA---EKTIRKYLVDNNFVDCVIQLPDNL 400

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IAT + +L+  KTE    K   I+A+  +    N      I+ +     I++ + 
Sbjct: 401 FFGTSIATCVLVLAKNKTE---NKTLFIDASKEFKKETN----NNILEEKNIDNIIEEFR 453

Query: 458 SREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQ 512
           +R +   FSR +D            V   +      +K  +  L  +I  T  K+  L  
Sbjct: 454 NRADVEHFSRYVDSSEIEENDYNLSVSTYVEKEDTREKIDIKVLNKEIAETVEKIDELRA 513

Query: 513 SFWLDILKPMMQQ 525
           S    + +    +
Sbjct: 514 SIDEIVRELESDE 526


>gi|126175909|ref|YP_001052058.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125999114|gb|ABN63189.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 547

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 117/564 (20%), Positives = 203/564 (35%), Gaps = 73/564 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MT+       L   +W  A+ L G     DF   +L F  LR L    E        +  
Sbjct: 1   MTQ--EQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDY 58

Query: 59  ------------YLAFGGSNIDLESFVKVAGYSFY--------NTSEYSLSTLGSTNTRN 98
                        L +     D+  F K      +         TS   L+   ++    
Sbjct: 59  PILAKDDKTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQ 118

Query: 99  NL---ESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVP 151
            L     YI   SF  + K +F + + +S            K+C     I   +   +  
Sbjct: 119 TLEAGFKYIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKLCTIIQKISEGIAEFSTD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI  F +   + A +F TP+ +  + + ++              +  + D
Sbjct: 179 SDILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L +   H+ D G           +GQE    T  +    ML+  +     +D
Sbjct: 239 FACGSGSLLLNVRKHIVDAGGTVG-----KIYGQEKNITTFNLARMNMLLHGV-----KD 288

Query: 272 LSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               I  G TL  D             +    ++NPPF  +W+  +         GE  R
Sbjct: 289 TEFEIHHGDTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQ-------GEDFR 341

Query: 324 FG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           F   GL   S     FL+H  + L    +  G  AI+L    LF G A   E  IR+ LL
Sbjct: 342 FKSHGLAPKSAADFAFLLHGFHFL----SDEGTMAIILPHGVLFRGGA---EQRIRKKLL 394

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            +  I+ ++ LP +LFF T I   + +L   K   +   +  INA++ +   + + K R 
Sbjct: 395 NDGHIDTVIGLPANLFFSTGIPVCIIVLKKCK---KYDDILFINASEHYEKGKRQNKLRE 451

Query: 443 IINDD--QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
              D+    ++I++ Y  R E+ ++SR +           +       ++       +++
Sbjct: 452 GKGDEPNDIKKIVETYQYRSEDERYSRRVSMAEIEKNDFNLNI---SRYVSTAKDTVKID 508

Query: 500 ADITWRKLSPLHQSFWLDILKPMM 523
                RKL  +  S    +++   
Sbjct: 509 LAKEQRKLVDIESSITSALIEHNK 532


>gi|149199876|ref|ZP_01876905.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155]
 gi|149137047|gb|EDM25471.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155]
          Length = 502

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 102/524 (19%), Positives = 189/524 (36%), Gaps = 55/524 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   +   +W   +   G      +   IL    L+ L    +      +++Y 
Sbjct: 1   MT-TQINQDDINKKLWSCCDIFRGTISADIYKDYILSMLFLKYLSDVWQDHYDNYKKQYG 59

Query: 61  AFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  ++   E F+     ++    +              L +   S     + +F+D
Sbjct: 60  DEPELIAEMMKSERFILSEESNYKYLYKKRHEAGNGERIDQALHAIEESNLSKLRGVFQD 119

Query: 118 FDFSSTIARLEK--AGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F+S     EK     L  + + F+   ++L P  V    ++ N YE+LI +F +    
Sbjct: 120 ISFNSDKLGEEKQKNEHLKDLLEVFAEAELDLRPSRVGKLDIIGNAYEYLIAKFAAGGGS 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A  F TP +V  L   +L           P     + DP  G+G  +      V     
Sbjct: 180 TAGQFFTPPEVSDLMAEIL----------DPQEGDEMCDPCTGSGSLIMKCGRKVQQ--- 226

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
           +H         GQE    T A+    M +   +       +  I+ G TL          
Sbjct: 227 NHNGSKNYALFGQESIGSTWALAKMNMFLHGED-------NHRIEWGDTLRNPKLIDSQG 279

Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++    +NPPF         A +      + GRF  G+P  + G   F+ H+   L+
Sbjct: 280 QLLQYDIVTANPPFSLDKWGHDGASD-----DKFGRFRRGIPPKTKGDYAFISHMIETLK 334

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR A+V+    LF G +   E +IR  L+E +L++ ++ LP +LFF T I   +
Sbjct: 335 ---PQSGRMAVVVPHGVLFRGSS---EGKIRTKLIEENLLDTVIGLPANLFFGTGIPAAI 388

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
                   ++   KV  I+A+  +    + GK +  ++ +  ++I+  +  RE   K+S 
Sbjct: 389 LYFK---KKKDDKKVLFIDASREF----DSGKNQNKLSSENVKKIIKTFNDREAIDKYSY 441

Query: 467 MLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           +            + + R +      ++  L  +  +    K  
Sbjct: 442 LASLEEIKENDFNLNIPRYVDTFEEEEEIDLEVVLKERKQLKAE 485


>gi|42525032|ref|NP_970412.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39577243|emb|CAE81066.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 585

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 128/590 (21%), Positives = 222/590 (37%), Gaps = 70/590 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M++ T     +   +W   +   G     ++   IL    ++ L    E       +++ 
Sbjct: 1   MSKVTQD--EINKILWDACDTFRGVVDAGEYKNYILTMLFIKYLSDTYEEKYEEYEKQFG 58

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              +     ++ E+FV   G  F +                 LE    +  +  + +F +
Sbjct: 59  GNESRIKRALEKENFVLPVGCHFKDIYAQKEEKNIGEIIDIALEKIEKANKEKLENVFRN 118

Query: 118 FDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
             F+S        ++   L  +  +F+   + +    + D  V+ N YE+LI  F +   
Sbjct: 119 VSFNSEANLGKTKDRNARLKHLLDDFNNQKLNMRKSNIGDLDVIGNAYEYLIANFAAGAG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L   L+          +P     +YDPTCG+G  L      +   G
Sbjct: 179 KKAGEFYTPSEVSQLLAKLV----------APQKGNRIYDPTCGSGSLLIRCAEQLTKKG 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
            +         +GQE+   T A+    M +   +          I+ G T+   L     
Sbjct: 229 END-----FQIYGQEITGATWALAKMNMFLHGFDRS-------VIENGDTIRSPLHLEDD 276

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +F   ++NPPF  +    +     E KN    RF  G+P  S G + F+ H+   L 
Sbjct: 277 TIMKFDIVVANPPFSLEKWGIE-----EAKNDPYDRFSYGIPPQSYGELAFVQHMIASL- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL------LENDLIEAIVALPTDLFFRT 401
              N  G+AA+VL    LF G +   E +IR  +      L+ DL+EA++ LPT+LFF T
Sbjct: 331 ---NENGKAAVVLPHGVLFRGSS---EQKIREGIIKGTDVLKGDLLEAVIGLPTNLFFGT 384

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-- 459
            I   + +L+  K  ER+GKV  INA   +   +N    +  +       I+  +     
Sbjct: 385 GIPAAIMVLNKNKPVERKGKVLFINADLEFQEGKN----QNKLRVSDIDHIVKNFKEFKT 440

Query: 460 ------ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPL 510
                 E   FSR++D R        + + R    S   +   +   L   I  R++   
Sbjct: 441 ENLYRHEEKHFSRVVDVRDIEDNEFNLNIRRYADTSPPPEIFDVKAILHGGIPRREIEDG 500

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           +    +D     +           F KE     + + L     +S I+ F
Sbjct: 501 YIQDIIDGFDISIIFDERDRDYYVFKKEIDSKEKIRELMGDVDQSIILQF 550


>gi|89898854|ref|YP_521325.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89343591|gb|ABD67794.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 544

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 112/557 (20%), Positives = 199/557 (35%), Gaps = 82/557 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
           E      +L   +W  A+ L      +++  V+L    L+ +  A +  R  ++  +   
Sbjct: 4   EEQQYLNNLDKQLWAAADRLRAAVNPSEYMHVVLGLVFLKYISDAFKERRLELQAAFQDP 63

Query: 61  ---------AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------- 103
                    A      +LE+       + +     +       N +  +++         
Sbjct: 64  ANDYYLGTDADELIAQELEARDYYTETNVFWVPALARWDFLKDNAKVAIDTVLTVKNGKT 123

Query: 104 -------IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                  I    D+A    E  +         + AR      L  +   FS I  +   +
Sbjct: 124 FEYKFKGIGRLLDDALEAVEKDNPKLKGVLDKSYARWRVDEALPGLIDEFSKIPFNHGAL 183

Query: 151 P-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               ++ +IYE+ +  F     +   +F TP+ +V +   +L   +             +
Sbjct: 184 KAKDILGHIYEYFLGEFSIAAGKRGGEFYTPKSIVSVIVEMLEPFEG-----------RV 232

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP CG+GGF   +   V + G        L  +GQE  P T  +    M IR L+ D  
Sbjct: 233 YDPCCGSGGFFVQSERFVLEHGGKIG---QLSIYGQEFNPTTWRLASMNMAIRGLDFD-- 287

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                  +  ST ++      R  + ++NPPF  K         KE    +  R+  G+P
Sbjct: 288 ----FGKEPASTYTRPQHPDLRADFIMANPPFNMKAW-------KEGVKDDDPRWKYGVP 336

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              + +  ++ H+ + L       G  A++L++  +      + E EIR+ L+E DL+E 
Sbjct: 337 PDGNANFAWMQHMIHHL----APHGSMALLLANGSM--SSNTNNEGEIRKALIEADLVEC 390

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEE-----RRGKVQLINATDLWTSIRNEGKKRRII 444
           +VALP  LF  T I   +W L+  K E      R G+V  I+A  L      + +  R  
Sbjct: 391 MVALPGQLFTNTQIPACIWFLTRSKAERKAKRSRHGEVLFIDARQLGYM---KDRVLRDF 447

Query: 445 NDDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             +   ++ D + + +          F +       G     VL P R      +   A 
Sbjct: 448 KPEDLAKVADTFHAWQRGVGYADEAGFCKAATLADIGKADY-VLTPGRYVGAAAQEADAE 506

Query: 498 LEADITWRKLSPLHQSF 514
              D   R  + L   F
Sbjct: 507 PFEDKMARLTAALGDQF 523


>gi|301300590|ref|ZP_07206784.1| type I restriction-modification system, M subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851807|gb|EFK79497.1| type I restriction-modification system, M subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 529

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 206/536 (38%), Gaps = 58/536 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------ALEPTRSAVREKYLAF 62
           +L   +   A+ L       ++   IL     + L          L    +   E+    
Sbjct: 7   TLERSLDSAADVLRSKMDANEYKNYILGTIFYKYLSDSMLYYVAELLEEENVSLEEAQKL 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTR-------NNLESYIASFSDNAK 112
              N D +  ++     F    E      + L S N          +  + I S     +
Sbjct: 67  YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNSIESQGKEFE 126

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            +F+D+D  S             I K  S I +L     P+  + N YE+LI++F SE  
Sbjct: 127 GLFDDYDLYSKRLGNTAQKQSDTISKVLSAIGKLEIVKTPEDTLGNAYEYLIKQFASESG 186

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  L   L L   D           T+YDPT G+G  L +   +V    
Sbjct: 187 KKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKYVEHS- 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                   +   GQE+   T+ +    M++  ++      +++ ++   TL +D    + 
Sbjct: 240 ------ERITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDWPVEEI 288

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   + NPP+ +KW  +    + + +    G     LP  S     FL+H    L+  
Sbjct: 289 TNFDTVVMNPPYSQKWSANA-GFKDDPRFSAYG----VLPPKSKADYAFLLHGYYHLK-- 341

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP +LF+ T+I T + +
Sbjct: 342 --HSGVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVV 396

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           L   K +     V  I+A+  +  +    K +  + D+   +IL  Y  R++  K++ + 
Sbjct: 397 LKKDKQDR---DVLFIDASKDFRKV----KTQNELRDEDVEKILTTYKERKDIDKYAHLA 449

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +         +  P  +     +  +   E     R+ +   +    +++  +  
Sbjct: 450 SFDEIKENEFNLNIPRYVDTFEPEPEINLDEVSKELRETNEKIKENETELISMLKD 505


>gi|157372316|ref|YP_001480305.1| type I restriction-modification system, M subunit [Serratia
           proteamaculans 568]
 gi|157324080|gb|ABV43177.1| type I restriction-modification system, M subunit [Serratia
           proteamaculans 568]
          Length = 863

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 119/603 (19%), Positives = 229/603 (37%), Gaps = 60/603 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    E      
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +V+      +A  + ++T     S    +N R+ L ++    S   K +F+ 
Sbjct: 62  EEDTDTVEYVQSNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++ +   D V+  IYE+L+ +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQGYD-VLGYIYEYLLEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +       
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNII------AHELKHKDTIKIYDPTSGSGSLLINIGEAFE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + K    +    QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 233 --KYAKNKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + W+      +         RF  GL   +     FL+H  
Sbjct: 291 QGSYYALHVDAVVSNPPYSQNWDPSFKESD-----PRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E +IR+ L+E + IE ++ LP ++FF T I
Sbjct: 344 YHLK----PDGIMAIVLPHGVLFR---GGEEGQIRKQLIEQNHIETVIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
            T + +L  ++   +   V +++A+  +        K   +     ++I D  ++RE   
Sbjct: 397 PTVILVLRQKR---QNTDVLVVDASKHFMK----EGKNNKLQASDIKRITDAVINRESID 449

Query: 463 KFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDIL 519
           KFS+++           + + R +  S       L A +   I   +++ LH +FW    
Sbjct: 450 KFSQLVSKETLRDNGYNLNIPRYVDSSETAQTWDLHATMLGGIPNCEIAELH-NFWQAFP 508

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           +       P   A S +  + +   A         +FI A+  AF   D   +     N 
Sbjct: 509 QLHGTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQAFNSFDDHLNTQLIQNW 568

Query: 580 EWI 582
           E +
Sbjct: 569 ESV 571


>gi|30022540|ref|NP_834171.1| Type I restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
 gi|29898098|gb|AAP11372.1| Type I restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
          Length = 468

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/505 (21%), Positives = 203/505 (40%), Gaps = 69/505 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------------EP 50
           A L + ++  A++L      +++   +L     + L   L                  E 
Sbjct: 2   AELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYDTQEK 61

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                RE        N  +E+ V   GY       +++ T  +       N  N     +
Sbjct: 62  QTQLYRESLADEDIKNDLIETLVDTLGYDIELDYLFNVLTNQAKQNTFQLNDLNKAFIDL 121

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           ++  D    +F+D D  S        ++   + ++ K  + +++        V+ + YE 
Sbjct: 122 STKYDQFNGLFDDVDLKSKKLGADDQQRNITITEVLKKLNDVDVLGHN--GDVIGDAYEF 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  + 
Sbjct: 180 LIGQFASEAGKKAGEFYTPHEVSVMMARIAAIGQED------KKLFSVFDPTMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ G T
Sbjct: 234 NIQNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDT 281

Query: 282 LSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T +   F   L NPP+  KW  D   ++    +    R+G  L   S     FL
Sbjct: 282 LNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFL 336

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF
Sbjct: 337 LHGFYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFF 389

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +   +N    +  +  +   +I++ Y  R
Sbjct: 390 GTSIPTTVIILKKNRATR---DVLFIDASKEFIKGKN----QNKLFKEHIDKIVETYKKR 442

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRP 483
           E+  K++ +  +         +  P
Sbjct: 443 EDVEKYAHVATFDEIKENEFNLNIP 467


>gi|240949256|ref|ZP_04753600.1| Type I restriction-modification system methyltransferase subunit
           [Actinobacillus minor NM305]
 gi|240296372|gb|EER47016.1| Type I restriction-modification system methyltransferase subunit
           [Actinobacillus minor NM305]
          Length = 561

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 112/564 (19%), Positives = 203/564 (35%), Gaps = 89/564 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +       L   +WK A+ L       ++  ++L    L+ +  +    +  ++++Y  
Sbjct: 21  ADQQAFLNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYTD 80

Query: 62  -----------------FGGSNIDLESFVKVAGYS-FYNTSEYSLSTLG---STNTRNNL 100
                                N +LE     A  + F+   +     +      N  + +
Sbjct: 81  PTSDFYLDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVVGANIGDKI 140

Query: 101 E-----SYIASFSDNAKAIFE--DFDFSSTIARLE----KAGLLYKICKNFSGIELHPDT 149
                   IA+  D+A    E  +    + I R+        +L  +   FS       T
Sbjct: 141 WGEKTFKGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSNTNFIRPT 200

Query: 150 VPD--------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           +           ++ ++YE+ + +F     +    + TP+ +V L   +L          
Sbjct: 201 LDGKPISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKG----- 255

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  +YDP  G+GGF       + +   H      +   GQE  P T  +    M I
Sbjct: 256 ------RIYDPAMGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMAI 306

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGE 320
           R +E D             T S      K+  + ++NPPF  K W     A +       
Sbjct: 307 RGIEFD------FGKGNADTFSNPQHRDKKMDFVMANPPFNMKDWWHPSLAQDL------ 354

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R+  G+P  S+ +  +L H+   L    +  GR A++L++  +      + E EIR+ 
Sbjct: 355 --RWQYGIPPESNANFAWLQHMIYHL----SPNGRMALLLANGSM--SSNTNNEGEIRKN 406

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +L+ DL+EA++ALP+ LF  T I   +WIL+  K   R+G+V  I+A  L      + + 
Sbjct: 407 ILKADLVEAMIALPSQLFTNTQIPACIWILNKDKA--RKGEVLFIDARQLGYM---KDRV 461

Query: 441 RRIINDDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            R    D   ++ D Y S +          F               VL P R     ++ 
Sbjct: 462 LRDFTADDIAKVADTYHSWQQSADYQNIPAFCYTASLDEIAQNDF-VLTPGRYVGAAEQE 520

Query: 494 GLARLEADITWRKLSPLHQSFWLD 517
                 A+   ++L+ L Q  +  
Sbjct: 521 DDGVPFAEK-MQELTALLQQQFKQ 543


>gi|293189231|ref|ZP_06607954.1| type I restriction-modification system, M subunit [Actinomyces
           odontolyticus F0309]
 gi|292821694|gb|EFF80630.1| type I restriction-modification system, M subunit [Actinomyces
           odontolyticus F0309]
          Length = 526

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 198/535 (37%), Gaps = 78/535 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGGSN 66
            A L   IW+ A DL G     DF   +L F   R +   L    +A  RE  +A GG+ 
Sbjct: 7   RAELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTP 66

Query: 67  IDLESF----------------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI------ 104
            +  +F                +      F   S+   +      +  NL   +      
Sbjct: 67  EEAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAASDENLNETLSYAFRF 126

Query: 105 -------ASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRV 154
                  +    + + +F+D D +ST       ++   L KI      + L         
Sbjct: 127 IENSARGSGSESDLRGLFDDVDVNSTKLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQIDA 186

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP++V  +   L LD    +          +YDP  
Sbjct: 187 FGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSDVT--------RVYDPCA 238

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +    S           GQE+   T+ +C   M +  +        + 
Sbjct: 239 GSGSLLLKFAKLLGPSSSR-------QYFGQEINLTTYNLCRINMFLHDVNFS-----NF 286

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G TL++      + F   +SNPP+  KW    D            RF P   L   
Sbjct: 287 DIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVGKDDIALIND-----PRFAPAGVLAPK 341

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F MH+ + L       G AAIV     L+ G A   E +IRR+L+EN+ + A++
Sbjct: 342 SKADLAFTMHMLHWL----AEDGTAAIVEFPGVLYRGAA---EGKIRRYLVENNFVHAVI 394

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP DLFF T IAT + +L   + +     V  ++A+       N+ +    +  + +++
Sbjct: 395 QLPPDLFFGTTIATCIIVLKKARPDH---SVLFVDASAECVREGNKNR----LTAENQQR 447

Query: 452 ILDIYVSREN-GKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           IL +   R+     + ++           + V   +      ++  +  L + I 
Sbjct: 448 ILFLVSERQAVDHVAALVSIDDIKDNDWNLSVSSYVEPEDTREQVDIVELNSRIA 502


>gi|294670041|ref|ZP_06734998.1| type I restriction-modification system, M subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291308162|gb|EFE49405.1| type I restriction-modification system, M subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 437

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 105/458 (22%), Positives = 182/458 (39%), Gaps = 60/458 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA----VR 56
           M + T   A L   IWK A+++ G     DF + +L     R +         A    + 
Sbjct: 9   MMKSTQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 68

Query: 57  EKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
              ++      ++ +  VKV GY  Y  S+   +     +    L + +           
Sbjct: 69  YAAMSDSIITPEIKDDAVKVKGYFIY-PSQLFCNIAAEAHQNEELNTKLKEIFIAIESSA 127

Query: 108 -----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                  + + +F+DFD +S+       +K   L  + K    ++  + +     +  + 
Sbjct: 128 SGYPSEQDIRGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVEELDFGNFEDHHIDLFGDA 187

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP++V  L   L +   + + K        +YDP CG+G 
Sbjct: 188 YEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYDPACGSGS 239

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  +       +I+ 
Sbjct: 240 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYNQ-----FHIEL 288

Query: 279 GSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL+   L  GK F   +SNPP+   W    D            RF P   L   S   
Sbjct: 289 GDTLTNPKLKDGKPFDAIVSNPPYSINWIGSDDPTLINDD-----RFAPAGVLAPKSKAD 343

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  
Sbjct: 344 FAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAP 396

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           +LF+ T+IA  + +LS  K       +Q I+A+  +  
Sbjct: 397 NLFYGTSIAVNILVLSKHKDNT---DIQFIDASGFFKK 431


>gi|229015568|ref|ZP_04172563.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1273]
 gi|228745715|gb|EEL95722.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1273]
          Length = 497

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/535 (19%), Positives = 197/535 (36%), Gaps = 69/535 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-------AFGGSNIDLE 70
            A DL G     +F   IL     R L   +E   +++  +           G    DL+
Sbjct: 1   MANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFAEAWGNGEYREDLQ 60

Query: 71  SFVKVAGYSFYNTS----------------EYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
            ++                            + +  L +        +  A   ++ + +
Sbjct: 61  EYLINELGYIITPQYLFSTFVKEIELGANGNFDIEMLQNGVKAIEASTMGADSQEDFENL 120

Query: 115 FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           F+D D +S+        ++ L+ K+  N + I    D V   V+ + YE++I +F +   
Sbjct: 121 FDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMISQFAANAG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   ++      +          +YD TCG+G  L           
Sbjct: 181 KKAGEFYTPQQVSRILAKIVTAGKTEIKD--------VYDGTCGSGSLLLRVGKEAK--- 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +   +GQE    T+ +    ML+  +          +I+   TL +     KR
Sbjct: 230 -------VYNYYGQEKVSTTYNLARMNMLLHDIPYQ-----RFDIKNADTLEEPQHLDKR 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+  KW  D    + E  +         L   S     F+ H  + L     
Sbjct: 278 FEAIVANPPYSAKWSADDKFQDDERFSNYAK-----LAPKSKADFAFVQHFIHHL----A 328

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++FF T+I T + +L
Sbjct: 329 DNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTSIPTCILVL 385

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
             +K  +    V  I+A++ +   +N    +  + D+   +I++ Y+SRE   K+S    
Sbjct: 386 --KKCRKHDDNVIFIDASNEFEKGKN----QNHLADEHVEKIVNTYLSRETFDKYSYAAT 439

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                     +  P  +    ++  +   E       +         ++     +
Sbjct: 440 LDEIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLEAIDEEIAKVDEELAAYFKE 494


>gi|269115295|ref|YP_003303058.1| Type I restriction enzyme M protein [Mycoplasma hominis]
 gi|268322920|emb|CAX37655.1| Type I restriction enzyme M protein [Mycoplasma hominis ATCC 23114]
          Length = 520

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 105/525 (20%), Positives = 196/525 (37%), Gaps = 65/525 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----RSAV 55
           M         L   IW  A  L G     DF + +L     R +   +        R A 
Sbjct: 1   MAINNQERDELHKKIWDIANRLRGSIDGWDFKQYVLGIMFYRYISENIATYANNRQRQAG 60

Query: 56  REKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            E +     S+ +     +  +   G+ F   SE  ++ + +  T N L   + +   N 
Sbjct: 61  IEDFDYTTLSDEEALTGRDDLINEKGF-FILPSELFINVVKNATTNNCLNETLDNIFKNI 119

Query: 112 K-------------AIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHP-DTVPDRV 154
           +              +F D D +S        E+   L  I +  + ++L          
Sbjct: 120 ESSAKGQQSENDFSGLFNDVDVNSQKLGRSVNERNKKLAAILQEIAAMKLGNYQDNSIDA 179

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   ++ TP++V  L T + +     +          +YDP C
Sbjct: 180 FGDAYEYLMSMYASNAGKSGGEYFTPQEVSELLTKIAVFNKKKVN--------RVYDPAC 231

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L   +  +               +GQE+   T+ +C   M +  +  D     + 
Sbjct: 232 GSGSLLLQTIKVLGKENIKDG------FYGQEVNLTTYNLCRINMFLHDIGFDKFNIYNG 285

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           +     + S +    + F   +SNPP+  KWE + + +    +     RF P   L   S
Sbjct: 286 DTLL--SPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPLLINDQ-----RFSPAGILAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L       G AAIV     ++ G A   E +IR++L+EN+ I+AI+ 
Sbjct: 339 KADFAFILHSLSWLAT----DGVAAIVCFPGIMYRGGA---EQKIRQYLVENNFIDAIIQ 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP++LFF T+I+T + +L   K +     +  I+A+  +  + N       +       I
Sbjct: 392 LPSNLFFGTSISTCIMVLKKSKID---NNILFIDASQEFLKVTN----NNKLTSQNINNI 444

Query: 453 LDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           +D Y  R++  + S++            +     +        + 
Sbjct: 445 IDYYGQRKDISYISKLASVEDIKSNSYNLSVNSYVEKQDTSEKID 489


>gi|163801599|ref|ZP_02195497.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174516|gb|EDP59318.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 504

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 113/494 (22%), Positives = 200/494 (40%), Gaps = 47/494 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + + P    +RL        +   E +       
Sbjct: 2   NKNKLEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLSDVYLEEYNEALELH------E 55

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFS 121
            D E       + F    E S   + +T+        N    I + ++    +F D  ++
Sbjct: 56  GDAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQWT 115

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 116 NK-ERLPD-HLLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 173

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIP 237
            VVHL T ++                + YDPTCGTGG L +A+  +   G       +  
Sbjct: 174 TVVHLMTRIM----------KLKPGESAYDPTCGTGGMLLNAVMDLRAQGEESSTNGQQW 223

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQE+   T A+    M +  +E     D+ +    G     +    K+F    +
Sbjct: 224 RGVHLYGQEVNLLTSAIARMNMFLHDIE---EFDVMRGDTLGEPKFIENDQLKQFDVIFA 280

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  K    +            GR   G+P        F  H+   L+      GRAA
Sbjct: 281 NPPYSIKKWNREK-----FAADPYGRNMYGVPPQGCADYGFYTHIIKSLK---PDTGRAA 332

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++     LF       E  IR+ ++E+D+IEA+V L  +LF+ + + + + +L+  K  E
Sbjct: 333 MLWPHGVLFRDS----EQAIRKQVIESDIIEAVVGLGPNLFYNSPMESCVVVLNCNKPVE 388

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476
           R+ K+  IN  +  T  R   +    ++DD    + + Y   +N +  + ++D  T    
Sbjct: 389 RKNKILFINGIEHVTRERAHSR----LSDDDLDVLCEAYFKPDNQRDITALVDLDTISEN 444

Query: 477 RIKVLRPLRMSFIL 490
           +  +  PL +   +
Sbjct: 445 QYNLSIPLYVEAKV 458


>gi|117676102|ref|YP_863678.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
 gi|117614926|gb|ABK50379.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
          Length = 874

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/540 (20%), Positives = 212/540 (39%), Gaps = 58/540 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L               E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +++      +A  + + T          +N R+ L ++    S   K +FE 
Sbjct: 62  EEDADTVKYIQDNLGYFIAYDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++     D V+  IYE+LI +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQGYD-VLGYIYEYLIEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +    V  
Sbjct: 180 AGKKAGEFYTPHEVSVLMSHII------AHELKHKDTIEIYDPTSGSGSLLINIGEAVE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + K    +  + QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 233 --KYAKSKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + W+           +    RF  GL   +     FL+H  
Sbjct: 291 QGTYHALYVDAVVSNPPYSQAWDPSFK-----DSDPRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G   IVL    LF    G  E EIR+ L+E + I+AI+ LP ++FF T I
Sbjct: 344 YHLKP----DGIMTIVLPHGVLFR---GGEEGEIRKQLIEQNHIDAIIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            T + +L  ++   ++ +  V +++A+  +        K   +     ++I+D  ++R+ 
Sbjct: 397 PTVILVLKQKRGSIDKPQNDVLIVDASKHFVK----EGKNNKLQASDIKRIVDAVINRDS 452

Query: 461 NGKFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
             KFS+++  +        + + R +  S   +   L A +   I   +++ LHQ +   
Sbjct: 453 IEKFSQVVSKQTLRDNGYNLNIPRYVDSSPAAESWDLHATMLGGIPNSEIAQLHQYWQAF 512


>gi|308272900|emb|CBX29504.1| Putative type I restriction enzyme HindVIIP M protein [uncultured
           Desulfobacterium sp.]
          Length = 516

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/504 (18%), Positives = 184/504 (36%), Gaps = 54/504 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +       +   +WK A+ L  +    ++  ++L    LR +  A E   + ++     +
Sbjct: 6   KNNIKEEPIEKQLWKAADKLRKNIDAAEYKHIVLGLMFLRYISDAFEDLYNKLKNGDGEY 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
            G++ + +   K A   F+   +   + L +           +     I   + + K + 
Sbjct: 66  AGADPEDKDEYK-AENVFFVPEKARWAYLLAKAKLPEIGKVVDEAMDAIEKDNPSLKDVL 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                 S +        L  +      I +         ++ +++E+ +  F     +  
Sbjct: 125 PKVFARSNL----DPTNLGGLIDLVGNIAMGAAKARSADILGHVFEYFLGEFALAEGKKG 180

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR VV L   +L                 ++DP CG+GG    +   VAD   H 
Sbjct: 181 GQFYTPRSVVELLVKMLEPYKG-----------RVFDPCCGSGGMFVQSEKFVAD---HQ 226

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T  +    + IR ++S   +  ++      +   D     +  Y
Sbjct: 227 GKVSDISIYGQESNHTTWRLARMNLAIRGIDSSQVKWNNEG-----SFLNDSHKDLKADY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF       +          + GR+  G+P   + +  ++ H    L    +  G
Sbjct: 282 VIANPPFNDSDWSGE-------ILKKDGRWKYGIPPSGNANYAWIQHFLYHL----SPSG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR- 413
           +A  VL+   L      SGE +IR+ L+E+ +++ IV LP  LF  T I   LW LS   
Sbjct: 331 QAGFVLAKGSL--TSKTSGEGDIRKALIEDRMVDCIVNLPAKLFLNTQIPASLWFLSRNR 388

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              K   R  ++  I+A ++   I    ++ R ++ +    I   Y +  N       D 
Sbjct: 389 ANGKFRNRTNEIFFIDARNMGYLI---NRRTRELSAEDINTISGTYHNWRNPDG-NYEDV 444

Query: 471 RTFGYRRIKVLRPLRMSFILDKTG 494
           + F      + R   + ++L    
Sbjct: 445 KGF-CNSASIERVKELDYVLTPGR 467


>gi|238923269|ref|YP_002936784.1| type I restriction-modification system methylation subunit
           [Eubacterium rectale ATCC 33656]
 gi|238874943|gb|ACR74650.1| type I restriction-modification system methylation subunit
           [Eubacterium rectale ATCC 33656]
          Length = 533

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/532 (21%), Positives = 208/532 (39%), Gaps = 68/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46
           M E   S   L + +W  A+ L       ++   +L     + L                
Sbjct: 1   MAEQENS-KDLISVLWSGADVLRSKMDANEYKNYLLGIVFYKYLSDSFLIRVYDLINDEK 59

Query: 47  ------ALEPTRSAVREKYL-AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
                 ALE  ++ ++ +Y             +V     ++   +E + +   +      
Sbjct: 60  PESLKVALEAYKNELKGEYANDLLDELKQDRKYVIEPELTYTCFAEDARNNCFNREQLQK 119

Query: 100 LESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             + I    +    +F D D  S+       +++  + ++ K     +L        ++ 
Sbjct: 120 AFNNIEQSGELFVDLFSDIDLYSSRLGAGDQKQSDTIAELIKVIDQADLLNS--DGEILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F SE  + A +F TP+ V  + T + +   + +         ++YDP  G+
Sbjct: 178 DAYEYLIGQFASETGKKAGEFYTPQAVSKILTRIAITGQENV------KGLSIYDPCMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +             +  +GQEL   T+ +    M +  + ++     ++N+
Sbjct: 232 GSLLLNAKRYYK------GDTNYIKYYGQELNMSTYNLARMNMFLHDVAAE-----NQNL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             G TL  D  TG+   FH  L NPP+  KW      ++ E +  E G   P     S  
Sbjct: 281 HHGDTLDADWPTGEETDFHMVLMNPPYSAKWSAASGFLQDE-RFSEYGVLAP----KSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 336 DYAFLLHGLYHLK----SNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +      GKK+  ++D+   +++D
Sbjct: 389 ANLFYNTSIPTCIVVLKKHRDGR---DVLFIDASKKFIK----GKKQNEMSDEHIDEVMD 441

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           +Y  RE   K S +  +         + + R +      ++  +  L  D+ 
Sbjct: 442 LYNRRETVDKESYLASFDDIEKNDFNLNIPRYVDNFEKEEEVDINGLLEDMQ 493


>gi|254475169|ref|ZP_05088555.1| type I restriction-modification system, M subunit [Ruegeria sp.
           R11]
 gi|214029412|gb|EEB70247.1| type I restriction-modification system, M subunit [Ruegeria sp.
           R11]
          Length = 515

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 116/528 (21%), Positives = 203/528 (38%), Gaps = 62/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT     A +L   IW  A  + G     DF + +L     R +            +   
Sbjct: 1   MTGQ-QQAEALRREIWSIANRVRGAVDGWDFKQFVLGALFYRFISENFTNYIEGGDDSIS 59

Query: 61  AFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
             G ++ D+    KV        F   S+   + + + +  ++L + +A           
Sbjct: 60  YAGMADADIPEEAKVDAVKTKGYFIYPSQLFQNVVKTASKNDSLNTDLAEIFSAIEASAS 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                 +   +F DFD +S        +K   L ++ K  +G+ L  +   + +  + YE
Sbjct: 120 GYPSEQDIYGLFADFDTTSNRLGSTVKQKNERLTEVLKGVAGLPLKFEDNKNDLFGDAYE 179

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP  V  L   L +     + K        +YDP  G+G  L
Sbjct: 180 FLISNYAANAGKSGGEFFTPTHVSKLIAKLAMHNQTRVNK--------IYDPAAGSGSLL 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A                    GQE+   T+ +    M +  +  D       NIQ G+
Sbjct: 232 LQAKEEFEKHIIEDG------FFGQEINYTTYNLARMNMFLHNINYDK-----FNIQYGN 280

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL    F   + F   +SNPP+  KW+   D            RF P   L   S     
Sbjct: 281 TLEDPHFQDDKPFDAIVSNPPYSVKWKGADDPTLINDD-----RFAPAGVLAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 336 FVLHALHYL----SATGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T IA  + +L+  K +     V+ I+AT+  T  R       I+ D    +I++++ 
Sbjct: 389 FFGTTIAVNILVLAKNKKDTA---VRFIDATEEDTFFRKGVNI-NIMEDRHIERIVEMFD 444

Query: 458 SRE-NGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI 502
           S++    F+  + Y         + V   +      +   + +L AD+
Sbjct: 445 SKDPVPYFAESVPYDKIVEKDYNLSVSAYVEPKDNREVVNITKLNADL 492


>gi|284051207|ref|ZP_06381417.1| type I restriction-modification system, M subunit [Arthrospira
           platensis str. Paraca]
          Length = 499

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 193/496 (38%), Gaps = 54/496 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W   ++L G    + +   +L    L+ +        + +           
Sbjct: 4   KKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSDKYAGKPNPL----------- 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                 +   G +F +  +              +++  A           DF+    + +
Sbjct: 53  -----IIVPQGAAFSDLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADFNDEDKLGK 107

Query: 127 -LEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             E    L ++   F GI L  +    D ++ + YE+L+R F +E  +    F TP +V 
Sbjct: 108 GKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKGQFYTPAEVS 167

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   +L  P             T+YDPTCG+G  L    +         + P  L  +G
Sbjct: 168 RVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------EAPNGLSIYG 212

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE++  T+++    M +              +       KD  + KRF + ++NPPF  K
Sbjct: 213 QEMDNATYSLARMNMFMHN-HPTAEIWKDNTLAAPYWKEKDG-SLKRFDFAVANPPFSYK 270

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              +      +    E  RFG G+P   +G   FL+H+   L+      G+AA++L    
Sbjct: 271 SWSNG----VDTARDEFNRFGYGVPPAKNGDYAFLLHILKSLK----STGKAAVILPHGV 322

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L   +   R G + +
Sbjct: 323 LFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVLDKAEAATRDG-LFM 378

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVL 481
           I+A+  +    N+ +    +      +I+D++ ++ E  ++SR++           + + 
Sbjct: 379 IDASKGFIKDGNKNR----LRSQDIHKIVDVFNNQLEIPRYSRLVSLEEIAANDYNLNIP 434

Query: 482 RPLRMSFILDKTGLAR 497
           R +  S   D   L  
Sbjct: 435 RYIDSSEPEDLHDLNA 450


>gi|227529075|ref|ZP_03959124.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351087|gb|EEJ41378.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
          Length = 550

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 114/583 (19%), Positives = 230/583 (39%), Gaps = 80/583 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55
            A  + N IW+ A  L G+   +++   IL F   R L                    +V
Sbjct: 3   KAQKITNKIWEMANRLRGNMDASEYRDYILGFMFYRYLSEHQEKYLVKNEVVFPEEGQSV 62

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSL---------STLGSTNTRNNLESYIA 105
            + YL         ++   +AG   Y    +Y+          + + +++ ++  +S+  
Sbjct: 63  NDAYLTQVPEEDLNDALADIAGSLGYAIAPQYTWATIVDKVHDNKIAASDYQDMFDSFNH 122

Query: 106 SFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           + + NA        +F+D + +++        +A  L  I      IE + D     ++ 
Sbjct: 123 NLNLNANSKMDFTGVFDDMNLNNSRLGNNTAARAKALTNIIDLVDEIE-YRDENGKDILG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IY +LI  F S   + A +F TP  V  +   L+ +  D           ++YD  CG+
Sbjct: 182 DIYTYLIAEFASNSGKKAGEFFTPHQVSEVLAKLVTENLDKNITRP-----SVYDFACGS 236

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +           ++  HGQEL   T+ +    +++  +  +     + ++
Sbjct: 237 GSLLLTVSEQLPSNM-------VVHYHGQELNTSTYNLARMNLMMHDVRYE-----NMDL 284

Query: 277 QQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           +   TL  D   G         + F   ++NPP+  +W+ + + + K+ +  E G     
Sbjct: 285 RNADTLEMDWPDGVDEHGVDHPRSFDMVVANPPYSARWDNNDNKL-KDPRFKEYG----A 339

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   +     FL+H    L+      G  AIVL    LF    G+ E++IR+ LLE + I
Sbjct: 340 LAPKTKADYAFLLHGLYHLKQ----DGTMAIVLPHGVLFR---GAKEAKIRQALLEKNQI 392

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +AI+ LP +LF+ T I T + +L   K  +    V  I+A+  +   +N    +  +  +
Sbjct: 393 DAIIGLPANLFYSTGIPTVVLVLKKNKENK---DVLFIDASKDFEKGKN----QNTLRKE 445

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI-T 503
              +I++ Y  R++  K++ +            + + R +          L +L  ++  
Sbjct: 446 DIDKIINTYKERKDVDKYAHVASIDEIKENDYNLNIPRYVDTFEPEPPVDLGKLTKEMEE 505

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
            +K     QS  L ++K +  +        +   + +++   +
Sbjct: 506 TQKEIEKTQSELLGMMKELTSKDEKTQNDLNDFIKMLENEVKR 548


>gi|156932818|ref|YP_001436734.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531072|gb|ABU75898.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894]
          Length = 569

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/525 (18%), Positives = 181/525 (34%), Gaps = 96/525 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M          L N  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNAEQQFLNELDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELMTLF 60

Query: 57  --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
                               E+Y       +++E +       F+        TL +   
Sbjct: 61  RDVGNPDNIYAISRDDYSSDEEYAQALLDELEVEDYY-TEKNVFWVPKAARWETLKNKAM 119

Query: 97  --------------RNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKI---- 136
                         ++     ++   DNA    E  +      + R+ +  L  ++    
Sbjct: 120 LPTGTVLWVDETTGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNRISQYQLGNEVLTGL 179

Query: 137 CKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              FS                    ++ ++YE+ + +F     +    + TP+ +V L  
Sbjct: 180 INTFSDANFSNPEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIV 239

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPH 243
            +L   +             +YDP  G+GGF   +   + +          +    +  +
Sbjct: 240 EMLQPYNG-----------RVYDPAMGSGGFFVSSDRFIEEHAGEKHYNAAEQKQKISVY 288

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  +    M IR +      D +   +   TL  D     R  + ++NPPF  
Sbjct: 289 GQESNPTTWRLAAMNMAIRGI------DFNFGTKNADTLLDDQHPDLRADFVMANPPFNM 342

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K            K     R+  G P   + +  ++ H+ + L       G  A++L++ 
Sbjct: 343 KEWWSA-------KLENDVRWKYGTPPQGNANFAWMQHMIHHL----APKGSMALLLANG 391

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EER 418
            +      + E EIRR L+E DL+E +VALP  LF  T I   +W L+  KT       R
Sbjct: 392 SM--SSNTNNEGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWFLTKDKTGGNGKAHR 449

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +G+V  I+A  +      + +  R    +   +I D +   +  K
Sbjct: 450 KGEVLFIDARKIGFM---KDRVLRDFTREDIAKIADTFHKWQADK 491


>gi|49658897|emb|CAF28523.1| putative HsdM-like N-methyl transferase [Yersinia
           pseudotuberculosis]
          Length = 568

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 100/516 (19%), Positives = 179/516 (34%), Gaps = 94/516 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L N  WK A+ L  +    ++  V+L    L+ +  A E  +  +            
Sbjct: 9   LNELDNKFWKAADKLRSNMDAANYKHVVLGLIFLKYVSDAFEARQQELITLFRDVGNPDN 68

Query: 56  -----------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------- 96
                       E+Y       +++E +       F+        TL +  T        
Sbjct: 69  IYAISRDDYATDEEYAQAIQEELEVEDYY-TEKNVFWVPKAARWETLKNKATLPVGTVLW 127

Query: 97  -----RNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIEL 145
                +      ++   DNA    ED +       +          +L  +   FS    
Sbjct: 128 VDELGQEVKLRSVSWLIDNALDKIEDANPKLKGILNRIGQYQLGNEVLIGLINTFSDANF 187

Query: 146 HP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +               ++ ++YE+ + +F     +    + TP+ +V L   +L      
Sbjct: 188 NNPEYNGEKLQLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML------ 241

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETH 252
                P     +YDP  G+GGF   +   + +          +    +  +GQE  P T 
Sbjct: 242 ----QPYKG-RVYDPAMGSGGFFVSSDRFIEEHAGEKHYNVAEQKRNISVYGQESNPTTW 296

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M IR +      D +   +   TL  D     R  + ++NPPF  K        
Sbjct: 297 KLAAMNMAIRGI------DFNFGKKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAKLE 350

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                     R+  G P   + +  ++ H+ + L       G  A++L++  +      +
Sbjct: 351 GDV-------RWQYGTPPQGNANFAWMQHMIHHL----APKGSMALLLANGSM--SSNTN 397

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINA 427
            E EIRR L+E DL+E +VALP  LF  T I   +W+L+  KT       R+G+V  I+A
Sbjct: 398 NEGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWLLTKDKTGGNGKAHRKGEVLFIDA 457

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             +        +  R    D   +I D + + +  K
Sbjct: 458 RQIGFM---RDRVLRDFTKDDIAKIADTFHAWQEDK 490


>gi|270157704|ref|ZP_06186361.1| putative type I restriction-modification system M subunit
           [Legionella longbeachae D-4968]
 gi|269989729|gb|EEZ95983.1| putative type I restriction-modification system M subunit
           [Legionella longbeachae D-4968]
          Length = 531

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/574 (18%), Positives = 206/574 (35%), Gaps = 82/574 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE      SL   +W  A  L        +  V+L    L+ +  + E  R  ++  + 
Sbjct: 1   MTE-NQFLKSLEVKLWAAANKLLPSLDAAVYKHVVLGMIFLKYVSDSFETRREELKSAFA 59

Query: 61  AFGGSNI------------DLESFVKVAGYSFYNTSEYSLSTLGSTNTR----------- 97
                              +LE+       + +     +       N R           
Sbjct: 60  NPKNDYYLGEDIEEDILKEELENRDYYTEKNVFWVPRAARWNYLQDNIRLSLGAPLPLGG 119

Query: 98  ---------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                    ++  + I + +   K I +  DFS      +K   L  +    + I  H D
Sbjct: 120 EFKGAGKLIDDAMALIEAENPKLKKILKK-DFSQLQIEHDK---LANLLDLIATIPFHYD 175

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            +    ++ ++YE+ + +F +   +    F TP+ +V+L   ++                
Sbjct: 176 GMKSKDILGHVYEYFLGQFAAAEGKKGGQFYTPKSIVNLIVEMVEPFKG----------- 224

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF   +   + +   H      +  +GQE  P T  +    M IR +   
Sbjct: 225 RVYDPAMGSGGFFISSEKFIEE---HQGRLGDISVYGQESNPTTWRLAAMNMAIRGI--- 278

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D +   +   T +KD     R  + L+NPPF  K   D              R+  G
Sbjct: 279 ---DFNFGKEPADTFTKDQHPDLRADFVLANPPFNMKEWWDGSL-------DGDSRWKYG 328

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P  ++ +  ++ H+ +      +  G   +VL++  L      SGE E+R  +++ DL+
Sbjct: 329 QPAENNANFAWMQHMLHH----TSPNGVVGLVLANGSL--SSNTSGEKEVRESIIKADLV 382

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EAIVALP+ LF  T I   +WIL+  K   ++ K   I+A      I    +K+R   D+
Sbjct: 383 EAIVALPSQLFSNTTIPACIWILNKNKA--QKEKTLFIDARQFGYMI---DRKQRAFTDN 437

Query: 448 QRRQILDIYVS-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-LARLEADITWR 505
              +I  ++ + R++  +    +     Y         +  +IL     +  ++ +    
Sbjct: 438 DIHEIAKVFRNWRKDENY----ENVAGKYYEATTEDIAKHEYILTPGRYVGAVDVEDDGV 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
             +   Q     + +   +           ++E 
Sbjct: 494 SFAEKMQELTNSLSEQFAESSKLEKQIRKNLEEL 527


>gi|257093459|ref|YP_003167100.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045983|gb|ACV35171.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 515

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 174/474 (36%), Gaps = 65/474 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------------ALEPTRSAVRE 57
            +   +W  A+ L  +    ++  ++L    ++ +                +P      +
Sbjct: 4   DIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELARRFADPADDYYLD 63

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDN 110
                     D + + +V    F+         L +   +       ++  + I   +  
Sbjct: 64  AADLIAEELEDRDYYREV--NVFWVPESARWEALRTAAKQPDIGKRIDDALTLIEVENPK 121

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
            K I +     + +      G L ++    S I    D      V+  +YE+ + +F S 
Sbjct: 122 LKGILDKRYARAQLP----DGKLGELVDLVSTIGFGADPGKARDVLGQVYEYFLGQFASA 177

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   V  
Sbjct: 178 EGKKGGQFYTPASIVKTLVAVLAPH-----------HGKVYDPCCGSGGMFVQSEKFVEA 226

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR +      D +   +   T +++    
Sbjct: 227 HGGKLGN---VSIYGQESNPTTWRLAAMNLAIRGI------DFNLGREPADTFTRNQHPD 277

Query: 290 KRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            R  + L+NPPF    W       +         R+  G P   + +  +L H+   L+ 
Sbjct: 278 LRADFILANPPFNVSDWWHGSLEGD--------PRWEFGTPPQGNANYAWLQHMLYHLKP 329

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + + +    E +IRR +++ D++E ++ALP  LFF T I   LW
Sbjct: 330 S----GRAGIVLANGSMSSSQNS--EGDIRRAMVDADVVEVMIALPGQLFFNTQIPACLW 383

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            L+  K   R G+V  I+A  L    R   + +  ++D+   +I     +  + 
Sbjct: 384 FLTKHKAA-RPGEVLFIDARKL---ARMISRVQTELSDEVIDRIAGTVAAWRDE 433


>gi|330991916|ref|ZP_08315865.1| Putative type I restriction enzyme HindVIIP M protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760937|gb|EGG77432.1| Putative type I restriction enzyme HindVIIP M protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 536

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 174/475 (36%), Gaps = 58/475 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            + T +       ++  A+ L  + + +D+  V L    LR +  A E    A+      
Sbjct: 24  AKATAANLGFEQQMFLAADKLRKNLEPSDYKHVTLGLIFLRYISTAFEAHHEALLHDDRE 83

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                 +      +A   F+       S L +    N   S I +  D+A    E  +  
Sbjct: 84  AAEDPDEY-----LAENIFWVPEAARWSHLQA----NARSSAIGTMIDDAMLAIEQANPD 134

Query: 122 STIARLEKAG--------LLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSE 172
                L K          +L ++    S I +   +     V+  +YE+ +  F      
Sbjct: 135 QLKNVLPKDYGRRELDSVMLGELVDLISEIGMGGSEDQARDVLGRVYEYFLGGFAGAEGR 194

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  VV    ++L           P     +YDP CG+GG    +   V   G 
Sbjct: 195 RGGEFYTPSSVVRTLVSML----------EPYKG-RVYDPCCGSGGMFVQSEQFVESHGG 243

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE    T  +    + +R + +D R +         +  +D     RF
Sbjct: 244 KLG---DIAIYGQESNYTTWRLAKMNLAVRGIGADIRWNNEG------SFLRDALKDLRF 294

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF                  E  R+  G P   + +  +L H+   L      
Sbjct: 295 DTILANPPFNVSEW-------WNASLEEDPRWQYGKPSAGNANYAWLQHILWHL----AP 343

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A +VL++  + + + G  E +IRR ++  D+++ +VALP  LF+ T I   LW L+ 
Sbjct: 344 DGMAGVVLANGSMSSDQNG--EGDIRRRMVGADVVDCMVALPGQLFYSTQIRACLWFLAR 401

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            K      +RRG++  I+A  L   +    + RR + D     I   Y +    K
Sbjct: 402 NKNPKGWRDRRGEILFIDARKLGIMV---DRTRRELTDADVALIAGTYHAWRGEK 453


>gi|213962057|ref|ZP_03390322.1| type I restriction-modification system, M subunit [Capnocytophaga
           sputigena Capno]
 gi|213955410|gb|EEB66727.1| type I restriction-modification system, M subunit [Capnocytophaga
           sputigena Capno]
          Length = 510

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/549 (19%), Positives = 205/549 (37%), Gaps = 66/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E   +  ++   +WK  + L        +   IL    ++ L    +    + REKY 
Sbjct: 1   MEENKITRDTINAIVWKACDTLRPVMGSGQYKDYILTLLFVKYLSDVRKEKIESYREKYN 60

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              A     +  + F+     +F    ++             L +   +       +F  
Sbjct: 61  GDEAMVSRQLQKDRFIIPEKSTFDYLYDHRNEPNLGEIIDIGLTALEEANRSKLTNVFRS 120

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEG 173
             F+S        ++  +L K+  +F  ++L P     + V+ + YE+LI  F  E  + 
Sbjct: 121 ISFNSEAVFGPTKQRNEILKKLLTDFLNLDLKPSHLAGNDVIGDSYEYLIAHFAGEAGKK 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP +V  L   L+          +P     + DP CG+G  L      V      
Sbjct: 181 AGEFYTPAEVSTLLAKLV----------APKAGDRIADPACGSGSLLIKVAKEVQGKN-- 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +GQE    T A+C+  M +   ++    +++           +     +F 
Sbjct: 229 ------YSLYGQENNGSTWALCLMNMFLHEQDA---ANITWGDTLNHPQLIENDALMKFD 279

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       ++A      +    RF  G+P  + G   F+ H+    E      
Sbjct: 280 VVVANPPFSLDKWGVENAA-----SDPYQRFHRGIPPKTKGDYAFISHMI---ETTHETN 331

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +++    LF G +   E  IR+ L+E +L+EA++ LP +LF+ T+I   + I +  
Sbjct: 332 GRVGVIVPHGVLFRGSS---EKTIRQQLIEENLLEAVIGLPANLFYGTSIPAAILIFNRA 388

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN------GKFSRM 467
           K       V  I+A+  + S +N    +  + D+    I+ +Y + +        K S +
Sbjct: 389 KGANT--DVLFIDASKAYESGKN----QNHLRDEDISHIVSVYQNYKKAKPINAEKGSVI 442

Query: 468 LDYRTFGYR-----------RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSF 514
                F YR            + + R +          +A + +++    ++LS + Q  
Sbjct: 443 --EERFAYRATLAEIEANDYNLNIPRYVDTFEPETLVDIATVHSELGQLKQELSEVEQQI 500

Query: 515 WLDILKPMM 523
              + +  +
Sbjct: 501 ERYLKELNL 509


>gi|197302014|ref|ZP_03167077.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC
           29176]
 gi|197298962|gb|EDY33499.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC
           29176]
          Length = 532

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/572 (19%), Positives = 212/572 (37%), Gaps = 67/572 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51
           M E   S   L + +W  A+ L       ++   +L     + L  +          +  
Sbjct: 1   MAEIENS-KDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLLYDEK 59

Query: 52  RSAVREKYLAFGGSNIDL--ESFVKV--AGYSFYNTSEYSLSTLGSTNTRNNL------- 100
            + ++E   A+  +  D   E           +    E + +        N+        
Sbjct: 60  PATLKEALEAYKEALEDESAEELKDQLSEECHYVMEPELTYTYFADAARNNSFNREQLQK 119

Query: 101 -ESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             + I         +F D D  S        +++  +  + K     +L        ++ 
Sbjct: 120 GFNNIEQSDPIFADLFTDIDLYSNRLGAGDQKQSDTVASLIKEIDKADLLNSDAE--ILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP+ V  + T + +   +           ++YDP  G+
Sbjct: 178 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAISGQED------KKGLSVYDPCMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  + +        P  +  +GQE    T+ +    M +  + ++     ++++
Sbjct: 232 GSLLLNAKKYASA-------PEYIKYYGQEQNTSTYNLARMNMFLHGIVAE-----NQHL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  TG+   F+  L NPP+  KW      ++ E +  + G   P     S  
Sbjct: 280 RNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDE-RFSDYGVLAP----KSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 335 DYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +    N+GKK+  + D+   ++L 
Sbjct: 388 ANLFYNTSIPTCIIVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIDEVLA 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +Y  R+   K S +  +         +  P  +     +  +         +K     + 
Sbjct: 441 LYSDRKTVEKESYLASFEDIEKNDFNLNIPRYVDNFEKEEDVDINTLLQDMKKTDDELEQ 500

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
              D +  +     P       + + I+  E 
Sbjct: 501 VKGDFVSLLKDLTSPDQNIIFSLNDLIRKLEG 532


>gi|261837922|gb|ACX97688.1| type I restriction enzyme modification protein [Helicobacter pylori
           51]
          Length = 525

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 209/566 (36%), Gaps = 79/566 (13%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N I K A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQAPKSSSLERNELHNTILKMANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  ---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E  R    +  L         +  + V    F   S    + L +     +L   + 
Sbjct: 61  NKEERERDPNFDYALLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNVQNNEDLNVTLQ 120

Query: 106 SF-------------SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT 149
           +               +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLTKILEAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDINYSK 286

Query: 269 RRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  DK+ +    +     RF P 
Sbjct: 287 -----FHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDKNPILINDE-----RFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L    +  G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYL----SNSGTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K   +      I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNK---QDNTTLFIDASKEFVK----EGKKNKLK 442

Query: 446 DDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
              R +IL  Y  R+    F  +              V R +      +   +  L ++I
Sbjct: 443 ARNREKILKTYTERKAIKHFCALASMEKIKENDYNLSVNRYVEQEDTKEIIDIKALNSEI 502

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYP 528
           +        QS   + L+ +++++  
Sbjct: 503 SQI---VEKQSALRNSLESIIKELEA 525


>gi|229553103|ref|ZP_04441828.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|258540282|ref|YP_003174781.1| type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|229313600|gb|EEN79573.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151958|emb|CAR90930.1| Type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 549

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/588 (20%), Positives = 220/588 (37%), Gaps = 95/588 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E    A  + + +W  A +L G+   ++F   IL F   R L    E           
Sbjct: 1   MAEKNI-AQEITSQLWAMANELRGNMDASEFRNYILGFMFYRYLSEHQERYLQETNLFEP 59

Query: 61  AFGGSNID---------------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
             G +  D               LE      GY+      ++       + +     Y  
Sbjct: 60  EAGQTWNDAFREVASDPESRKEYLEDISSELGYAIAPEQTWASLVQKVNDDKIVPSDYQD 119

Query: 106 SFSD-------------NAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELH 146
            F D             + + IF D +       SST AR +    + ++   F     +
Sbjct: 120 LFDDFNKNAALNPNSEADFRGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFE----Y 175

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D     ++ ++YE+LI +F     + A +F TP  V  +   L+     AL  +    I
Sbjct: 176 NDKQGRDILGDVYEYLIAQFAGNSGKKAGEFYTPHQVSKVLAKLV-----ALGVQKDQEI 230

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            T+YDPT G+G  L    + +            ++ HGQEL   T  +    +++  +  
Sbjct: 231 FTVYDPTMGSGSLLLTVRDELPAT------VKAVMFHGQELNTTTFNLARMNLMMHNVPY 284

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                 + +++   TL  D   G        + F   ++NPP+   W+  ++ +    K+
Sbjct: 285 -----TNMSLRNADTLEDDWPDGVVGGVDSPRSFDAVVANPPYSIHWDNSENKL----KD 335

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                FG  L   S     F+ H    L    N  G  AIVL    LF G A   E +IR
Sbjct: 336 PRFKPFG-ALAPKSKADFAFVEHGLYHL----NDTGTMAIVLPHGVLFRGAA---EGKIR 387

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + ++E + ++A++ +P  LFF T I T + +    +T      +  I+A++ +   +N  
Sbjct: 388 KAIIEKNYLDAVIGMPAGLFFSTGIPTVVLVFKKNRTNR---DIFFIDASNNFEKGKN-- 442

Query: 439 KKRRIINDDQRRQILDIYVSREN-GKFSR------MLDYRTFGYRRIKVLRPLRMSFILD 491
             + I+ D    +I++ Y  RE+  K++       +++        + + R +  +    
Sbjct: 443 --QNILRDSDIDKIIEAYSKREDVDKYAHKAELDEIVENE----YNLNIPRYVDTTEPEK 496

Query: 492 KTGLARLEADI--TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
              + ++ ADI  T +K++ L      DI   +           +  +
Sbjct: 497 PIDVVQVVADIKETDKKIAKLSSELAKDIDDLVANNDEAAKQLAALKE 544


>gi|153948702|ref|YP_001402490.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960197|gb|ABS47658.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 863

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 110/538 (20%), Positives = 211/538 (39%), Gaps = 59/538 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE 
Sbjct: 62  EEDADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++ +   D V+  IYE+L+ +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLLEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++       ++        +YDPT G+G  L +       
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNII------AYELKHKDTIKIYDPTSGSGSLLINIGEAFE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + K    +  + QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 233 --KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + W+           +    RF  GL   +     FL+H  
Sbjct: 291 QGSYYALHVDAVVSNPPYSQNWDPSFK-----DSDPRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E +IR+ L+E + I+ I+ LP ++FF T I
Sbjct: 344 YHLK----PDGIMAIVLPHGVLFR---GGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
            T + +L   K + +   V +I+A+  +        K   +     ++I D  ++RE   
Sbjct: 397 PTVILVL---KQKRQNTDVLVIDASKHFMK----EGKNNKLQASDIKRITDAVINRESID 449

Query: 463 KFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
           KFS+ +  +        + + R +  S       L A +   I   +++ LH  +   
Sbjct: 450 KFSQRVSKQTLRDNGYNLNIPRYVDSSAATPSWDLHATMLGGIPNSEIAELHNYWQAF 507


>gi|63146883|emb|CAI79466.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 532

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 206/537 (38%), Gaps = 67/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M E   + + L + ++  A+ L       ++   +L     + L               +
Sbjct: 1   MAEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESY 103
            T    ++ Y         LE      GY       Y+     +       N   +  + 
Sbjct: 60  VTLDKAQKIYEENLEEEDLLEEVKDELGYLIEPEYTYTKILDNANDGSFQLNQLGDAFNK 119

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           + S   + + +F+D+D  S        ++   +  + K    +EL     P   + + YE
Sbjct: 120 LESQGSSFEGLFDDYDLYSKRLGQNLQKQTDTIAGVIKAIGKLEL--VKTPGDTLGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F SE  + A +F TP++V  L   L L   D           ++YDP  G+G  L
Sbjct: 178 YLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSGSLL 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   +V +          +  +GQE+   T  +    M++  ++       ++ ++ G 
Sbjct: 232 LNFRKYVPNSSR-------ITYYGQEINTSTFNLARMNMILHHVD-----LANQKLRNGD 279

Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL +D    +   F   + NPP+  KW  DK  ++    +    ++G  LP  S     F
Sbjct: 280 TLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD----DPRFSKYGV-LPPKSKADYAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ LP +LF
Sbjct: 335 LLHGFYHLK----HSGAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLPANLF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T I T + +L   K +     V  I+A+  +  +    K +  +  +   +IL  Y  
Sbjct: 388 YSTGIPTTIVVLKKDKQDR---SVLFIDASKEFEKV----KTQNKLRQEDIDKILKTYEE 440

Query: 459 R--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           R  +  K++ +  +         +  P    ++        ++     ++L  + Q 
Sbjct: 441 RPADVEKYAHLASFDEIKENDFNLNIP---RYVDTFEPEPEIDLRDVAKELRDIDQQ 494


>gi|269103361|ref|ZP_06156058.1| type I restriction-modification system M subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163259|gb|EEZ41755.1| type I restriction-modification system M subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 889

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 108/579 (18%), Positives = 216/579 (37%), Gaps = 65/579 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GS 65
           +   L++ ++K  + L G    +++ + I     L+R+         A   +    G   
Sbjct: 5   TLNKLSSKLFKACDILRGKMDASEYKEYIFGILFLKRMSDQFHKDYQAKISELKKEGHDD 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN-----AKAIFEDF 118
           +           + F+   +     L    TN  + L   + +  ++      + + +  
Sbjct: 65  DEIELLLEDEEQFDFFVPEKARWENLKHLKTNVGSGLNKALEALEESNTKKGLEGVLKHI 124

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAED 176
           +F+  + +       L +  ++F  I L         ++   YE+LI+ F     +   +
Sbjct: 125 NFNRKVGKKPIPDERLVEFIQHFDSIPLSNSDFEFPDLLGAAYEYLIKYFADSAGKKGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +VV L   +L           P     +YDPTCG+GG L  + N+V + G + K 
Sbjct: 185 FYTPAEVVRLLVEIL----------EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVK- 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKR 291
              +   GQE    T ++C   M++             +I+ G TL+  L        + 
Sbjct: 234 --KIHLFGQEDNGGTWSICKMNMILHGTGG-------ADIENGDTLATPLHRTKDGEVRP 284

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF + ++K    +++         F P   K     ++F+ H+   L+    
Sbjct: 285 FDRVIANPPFSQNYKKADMQLKE-----RFNTFMPESGK--KADLMFVQHMVASLKA--- 334

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA+V+    LF    G+ E   R+  +E  ++EA++ LP  LF+ T I   + +L+
Sbjct: 335 -NGKAAVVMPHGVLFR---GAEERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVLN 390

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-------KF 464
               ++R   V  INA   +   +N    +  +  +   +I  +Y             K+
Sbjct: 391 KAGCKKR-DSVLYINADREYREGKN----QNSLRPEDIEKITSVYKVMLEDEKHPGVEKY 445

Query: 465 SRMLDYRTFGY--RRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD-ILK 520
           +R++           + + R +  S   +   + A L   I   ++  L  ++     LK
Sbjct: 446 ARLVHKDELAREDYNLNIRRYVDNSPAPEPQNVKAHLSGGIPTTEIDALQSTWNDYPGLK 505

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
             +         + F  E    +  K+            
Sbjct: 506 ESLFVPRANNEFQDFADEFEALSSLKSHIESFPAVLKKH 544


>gi|329948021|ref|ZP_08294922.1| type I restriction-modification system, M subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328523160|gb|EGF50261.1| type I restriction-modification system, M subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 519

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/533 (20%), Positives = 198/533 (37%), Gaps = 69/533 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M++ T   A L   IW+ A DL G     DF   +L F   R +   L    +A   +  
Sbjct: 1   MSKETERDA-LHRAIWRVANDLRGSVDGWDFKAYVLGFLFYRFISENLTEYINAGEREAG 59

Query: 59  -------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFS 108
                  +L+   +    +  ++  G+       +      +    N    L     S  
Sbjct: 60  DPDFDYRFLSHADAEGARDGIIEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFKSIE 119

Query: 109 ---------DNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                     + + +F+D D +ST       ++   L ++ +    ++L           
Sbjct: 120 ASATGTGSESDLRGLFDDVDVNSTKLGRTVAQRNDKLTRLMQAIGDLDLSYGESSIDTFG 179

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE L+  + S   +   +F TP+++  +   + +    ++          +YDP CG+
Sbjct: 180 DAYEFLMTMYASNAGKSGGEFFTPQEISEVLARITVMGKKSVN--------RVYDPACGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +                GQE+   T+ +C   M +  +          +I
Sbjct: 232 GSLLLKFAKVLGKENVRGG------FFGQEINLTTYNLCRINMFLHDINF-----ADFSI 280

Query: 277 QQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL+       + F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 281 VHGDTLTDPAHWDDEPFEAIVSNPPYSTKWIGKDDPALVND-----PRFSPAGVLAPKSR 335

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + F MH+ + L +     G AAIV     LF G A   E++IR++L+EN+ ++A++ L
Sbjct: 336 ADLAFTMHMLSWLAV----DGTAAIVEFPGVLFRGAA---EAKIRQYLVENNYVDAVIQL 388

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P DLFF T IAT + +L   K   +   V  ++A+  +    N+ K    ++ + +  IL
Sbjct: 389 PPDLFFGTQIATCIIVLKKSK---QDNSVLFVDASKQFVREGNKNK----LSAENQEMIL 441

Query: 454 DIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
                R +    + ++           + V   +      ++  +  L A I 
Sbjct: 442 KTLAKRADVDHVAALVSAEAIRDNGFNLSVSSYVEAEDTREEVDIVELNARIK 494


>gi|237752774|ref|ZP_04583254.1| type I restriction-modification system [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376263|gb|EEO26354.1| type I restriction-modification system [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 507

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 191/537 (35%), Gaps = 68/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++  A+ L  +    ++  ++L    L+ +  + E     +  +  
Sbjct: 7   MAKVKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 65

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
                +        +A   F+   +   S+L S           +     I   +   K 
Sbjct: 66  DAEDKD------EYIAKNIFFVPQDSRWSSLLSKAKSPQIGKDLDYALDLIEKDNPQLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         +     +  L  +      I L+ +   D ++ +I+E+ +  F     + 
Sbjct: 120 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSD-ILGHIFEYFLGEFALSEGKK 174

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP+ VV L  A+L   +             ++DP CG+GG    +   V +   H
Sbjct: 175 GGQFYTPKSVVELLVAMLEPYNG-----------RVFDPCCGSGGMFVQSERFVRE---H 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R+++S   +  S+      +   D     +  
Sbjct: 221 QGKISDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 275

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +             R+  G P  ++ +  ++ H  + L       
Sbjct: 276 FIIANPPFNATDWGSEALENDV-------RWQYGTPPSTNANYAWISHFIHHL----APK 324

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  VL+   L      S E +IR+ L+E++LIE IV LP  LF  T I   LW +   
Sbjct: 325 GRAGFVLAKGSL--TSNTSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 382

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------NGKFSRM 467
           K+         I+A  L   I    +K RI+      +I + Y   +      +G++S +
Sbjct: 383 KSH---NNTLFIDARSLGELI---NRKNRILTQSDIAKITETYHKWQKAQEQKDGEYSDI 436

Query: 468 LDY-----RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           L +     +        VL P R   + +       E + T  K     Q     IL
Sbjct: 437 LGFCKSVSKEEIANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEERIL 493


>gi|289423461|ref|ZP_06425263.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156095|gb|EFD04758.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 535

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/557 (20%), Positives = 206/557 (36%), Gaps = 71/557 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA----------- 54
               S+ + +W  A +L G+   ++F   IL F   R L    E                
Sbjct: 3   NKVQSITSKLWAMANELRGNMDASEFKNYILAFMFYRYLSEHQENYMVEYGIIDSEDGMS 62

Query: 55  --VREKYLAFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNT-----------RNN 99
                K  + G  +  ++      GY+ Y   T E   + +                 NN
Sbjct: 63  NNEVYKRDSAGDLDTFIKDIADELGYAIYPDDTWESLCNKIDEGKIVPSDYQKLLDNFNN 122

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    ++   +F D +   +        +A  L  I K    +E   +   D ++ 
Sbjct: 123 NARINERAEEDFSGVFNDINLGDSKLGASATARARSLNNIVKLVDEVEYKGEDGKD-ILG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            IYE+LI +F +   +   +F TP  V  +   ++     A  K        LYDPT G+
Sbjct: 182 EIYEYLIGQFAASAGKKGGEFYTPHQVSQILAKIVTTGRVASKK-----TFNLYDPTMGS 236

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      V D          +  +GQEL   T+ +    +++  +E       + ++
Sbjct: 237 GSLLLT----VRDELPGGDRVGAMDFYGQELNTTTYNLARMNLMMHGVEY-----KNMSL 287

Query: 277 QQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           + G TL +D             K F   ++NPP+  KW+ ++  ++    NG  G+  P 
Sbjct: 288 KNGDTLEEDWPIDTDKNGKMEPKWFDAVVANPPYSAKWDNNERKIKDPRFNG-YGKLAPA 346

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL- 386
               S     F++H    L+      G  AIVL    LF G A   E  IR+ L+E D  
Sbjct: 347 ----SKADFAFILHSVYHLK----EDGTMAIVLPHGVLFRGAA---EGVIRKTLIEKDNY 395

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++A++ LP +LF+ T+I T + +    +T      V  I+A+  +   +N    +  + D
Sbjct: 396 LDAVIGLPANLFYGTSIPTTILVFKKDRTARGVSDVLFIDASSDFVKGKN----QNTLTD 451

Query: 447 DQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   +I+  Y  R+   K+S +            +  P  +    ++  +  +       
Sbjct: 452 EFIDKIVSTYRYRKAIDKYSYVASLDEVKENDYNLNIPRYVDTFEEEEPVDLIAVSKLIE 511

Query: 506 KLSPLHQSFWLDILKPM 522
           + +        +I++ +
Sbjct: 512 EDNKEIAKLESEIMEQL 528


>gi|63146889|emb|CAI79472.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 532

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 110/555 (19%), Positives = 211/555 (38%), Gaps = 67/555 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M E   + + L + ++  A+ L       ++   +L     + L               +
Sbjct: 1   MAEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESY 103
            T    ++ Y         L+      GY       Y+     +       N   +  + 
Sbjct: 60  VTLDEAQKIYEENLEEEGLLDEVKDELGYLIEPEYTYTKILDNANDGSFQLNQLGDAFNK 119

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           + S   + + +F+D+D  S        ++   +  + K    +EL     P   + + YE
Sbjct: 120 LESQGSSFEGLFDDYDLYSKRLGQNLQKQTDTIAGVIKAIGKLEL--VKTPGDTLGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F SE  + A +F TP++V  L   L L   D           ++YDP  G+G  L
Sbjct: 178 YLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSGSLL 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   +V +          +  +GQE+   T  +    M++  ++       ++ ++ G 
Sbjct: 232 LNFRKYVPNSSR-------ITYYGQEINTSTFNLARMNMILHHVD-----LANQKLRNGD 279

Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL +D    +   F   + NPP+  KW  DK  ++    +    ++G  LP  S     F
Sbjct: 280 TLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD----DPRFSKYGV-LPPKSKADYAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ LP +LF
Sbjct: 335 LLHGFYHLK----HSGAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLPANLF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T I T + +L   K +     V  I+A+  +  +    K +  +  +   +IL  Y  
Sbjct: 388 YSTGIPTTIVVLKKDKQDR---NVLFIDASKEFEKV----KTQNKLRQEDIDKILKTYEE 440

Query: 459 R--ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS-PLHQS 513
           R  +  K++ +  +         + + R +       +  L  +  ++         ++ 
Sbjct: 441 RPADVEKYAHLASFDEIKENDFNLNISRYVDTFEPEPEIDLRDVAKELRDIDQQINENEK 500

Query: 514 FWLDILKPMMQQIYP 528
             + +LK +      
Sbjct: 501 ELVGMLKELTSSDDD 515


>gi|315127914|ref|YP_004069917.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913]
 gi|315016428|gb|ADT69766.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913]
          Length = 559

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/575 (18%), Positives = 191/575 (33%), Gaps = 98/575 (17%)

Query: 1   MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-- 56
           MT          L   +W  A+ L        +   +L    ++ +  A +  +  +   
Sbjct: 1   MTNTEEQQFLTDLEKKLWNAADKLRSTLDAAQYKHAVLGLVFIKYVSDAFKIRQDELISA 60

Query: 57  ------------EKYLAFGGSNIDLESFVKVAGYS-------FYNTSEYSLSTLGSTNT- 96
                       E +     +    E  V++           F+  ++   S L   N  
Sbjct: 61  FNNPDSDYFLDPEDFGGKESAEYQEELAVELEQRDYYLETNTFWVPTQARWSFLQDNNKT 120

Query: 97  ------------RNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKIC 137
                       +    + +    DNA    E  +       +    RL+     L ++ 
Sbjct: 121 VIGGAELPIGNDKTIKITSVGHLIDNALDAIEVANPKLKGVLNKQYTRLQIDQVKLAELI 180

Query: 138 KNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              + I   H       ++ ++YE+++ +F     +    F TP+ +V L   ++     
Sbjct: 181 DLIATIPFVHASLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPKSIVSLMVQMMEPFKG 240

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                       +YDP  G+GGF   + + +    +H      +  +GQE    T  +  
Sbjct: 241 -----------RVYDPAMGSGGFFVQSEHFI---NAHKGKIGDVSIYGQEYNHTTWQLAS 286

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M IR +      D +   +  +T + D     R  + ++NPPF  K            
Sbjct: 287 MNMAIRGI------DFNFGKEPANTYTNDQHPDLRADFVMANPPFNMKEW-------DVG 333

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            + +  R+  G P   + +  +L H+           G   ++L++  +      + E  
Sbjct: 334 VSDDDPRWAYGTPPSGNANFAWLQHMLYH----TAPNGSVGLLLANGSM--SSNTNNEGA 387

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKVQLIN 426
           IR+ L+E DL+E +VALP  LF  T I   +W L+  K            +RRGKV  I+
Sbjct: 388 IRKALIEQDLVECMVALPGQLFTNTQIPACIWFLTKNKNARVSASGRQLTDRRGKVLFID 447

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIK 479
           A +L      + +  R        Q+   + + +          F   +D+         
Sbjct: 448 ARNLGYM---KDRVLRDFTQTDLDQVTATFHNWQQASDYQDTAGFCASVDFAGITKHDF- 503

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           VL P R            L AD   R  + L   F
Sbjct: 504 VLTPGRYVGAEAAEDDGELFADKMARLTTQLKSQF 538


>gi|47459121|ref|YP_015983.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
 gi|47458450|gb|AAT27772.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
          Length = 524

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 116/544 (21%), Positives = 204/544 (37%), Gaps = 73/544 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                   L   IWK A DL G     DF + +L     R +   L    +    K    
Sbjct: 4   NKEIERNELHRTIWKIANDLRGSVDGWDFKQYVLGMLFYRYISENLANYINQGEWKATKK 63

Query: 63  GG-------------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105
                             +++  VK  G+ F   S   ++   + +   +L   +     
Sbjct: 64  QDFRYENISDDKILSKKEEIKELVKEKGF-FIRPSHLFVNIRKNASKNKDLNVALDKVFK 122

Query: 106 ---------SFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPD 152
                    S   + K +F+D + +S+       E+   L K+  N   ++L +      
Sbjct: 123 EIEASANGSSSEKDFKGLFDDINLNSSKLGSTVNERNEKLTKLINNIGEMKLGNFKDNSI 182

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T + L   + + K        +YDP
Sbjct: 183 DAFGDAYEYLMSMYASNAGKSGGEYYTPQEVSELLTKITLIGKNEINK--------VYDP 234

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L +    +                GQE+   T+ +C   M +  +  +     
Sbjct: 235 ACGSGSLLLNFAKILGKEKVRQG------FFGQEINQTTYNLCRINMFLHDINYNK---- 284

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             NI QG TL+  L    + F   +SNPP+  KW    + +          RF P   L 
Sbjct: 285 -FNISQGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPLLIND-----PRFSPAGVLA 338

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+A
Sbjct: 339 PESKADLAFVMHSLSYL----ASNGTAAIVTFPGVMYRKGA---EEKIRKYLIDNNFIDA 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LFF T+IAT + +L   K E        I+A+  +    N  K    +  +  
Sbjct: 392 IIQLPENLFFGTSIATCVLVLKKNKKE---NSTLFIDASKEFQKATNSNK----LLSENI 444

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +IL+ Y  R +   FS+ +           +     +    +K  +     +   +K+S
Sbjct: 445 SKILNTYEKRLDQEYFSKNVSNSKISEESYNLSVSTYIEQKFEKEIIDINILNKEIQKIS 504

Query: 509 PLHQ 512
              +
Sbjct: 505 NKGK 508


>gi|183600211|ref|ZP_02961704.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827]
 gi|188022508|gb|EDU60548.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827]
          Length = 515

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 210/549 (38%), Gaps = 70/549 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               +  L   +WK A+ L  +    ++  V+L    L+ +  + E     ++     F 
Sbjct: 6   KETKSEPLEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYEKLKAGQGEFA 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKAIFE 116
           G++ + +S   +A   F+   +   + L +   + N+          I   +   K +  
Sbjct: 66  GADPE-DSDEYLAYNVFFVPEKARWTNLLNNAKQPNIGKLVDDAMEAIEEDNPQLKGVLP 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                  +     A +L ++      I L    +    V+ +++E+ +  F     +   
Sbjct: 125 KVYARQNL----DATVLGELIDLVGDIALGDAKSRSADVLGHVFEYFLGEFALAEGKQGG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+ +V L   +L   +             ++DP CG+GG    +   V    SH  
Sbjct: 181 QFYTPKSIVSLLVNMLEPYEG-----------RIFDPCCGSGGMFVQSEKFVE---SHQG 226

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T  +    + IR + S+  +  ++      +   D     R  + 
Sbjct: 227 NIDNISIYGQESNQTTWRLAKMNLAIRGINSEQVKWNNEG-----SFLNDAHKDLRADFI 281

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF       +   +         R+  G P   + +  ++ H    L    +  G+
Sbjct: 282 IANPPFNVSDWSGEQLRKD-------ARWQYGAPPAGNANFAWMQHFLYHL----SPKGQ 330

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           A +VL+   L      SGE +IR  L+++ ++I+ IV LP  LF  T I   LW +   +
Sbjct: 331 AGVVLAKGAL--TSKTSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDR 388

Query: 415 T-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRM 467
                 ++R G++  I+A +L   I    ++ ++++D+  + I D Y +   ++G++  +
Sbjct: 389 NNSSVYQDRSGEILFIDARNLGYLI---NRRTKVLSDEDIKLISDTYHNWRNKDGEYEDV 445

Query: 468 --------------LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                         LDY     R + +          ++    + E +    + + L+Q+
Sbjct: 446 AGFCASVAIDKVAELDYVLTPGRYVGLADEEDDFDFKERFTALKTEFEAQLEEEAKLNQA 505

Query: 514 FWLDILKPM 522
              ++ K M
Sbjct: 506 IAENLAKVM 514


>gi|260771741|ref|ZP_05880660.1| type I restriction-modification system M subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260613325|gb|EEX38525.1| type I restriction-modification system M subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 869

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 122/591 (20%), Positives = 233/591 (39%), Gaps = 62/591 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQQVQFVTKQGMTPEDIKALN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +++      +A  + ++T          +N R+ L ++    S   K +FE 
Sbjct: 62  EEDADTVKYIQDNLGYFIAYDNLFSTWIDPTHDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 FDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L        ++   +  +      I ++     D V+  IYE+LI +F + 
Sbjct: 122 I-FTTLEKGLSQLGESAGKRTKAISDLLHLIKSIPMNGKQGYD-VLGYIYEYLIEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +    V  
Sbjct: 180 AGKKAGEFYTPHEVSVLMSHII------AHELKHKDTIEIYDPTSGSGSLLINIGEAV-- 231

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G + K    +  + QEL+ +T+ +    +++R +++   +  + +  +      D    
Sbjct: 232 -GKYAKNKDSITYYAQELKDKTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + W+           +    RF  GL   +     FL+H  
Sbjct: 291 QGTYHALYVDAVVSNPPYSQAWDPSFK-----DSDPRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G   IVL    LF    G  E EIR+ L+E + I+AI+ LP+++FF T I
Sbjct: 344 YHLKP----DGIMTIVLPHGVLFR---GGEEGEIRKQLIEQNHIDAIIGLPSNIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
            T + +L   K + +   V +++A+  +        K   +     ++I+D  ++R+   
Sbjct: 397 PTVIIVL---KQKRQNTDVLIVDASKHFVK----EGKNNKLQASDIKRIVDAVINRDSID 449

Query: 463 KFSRMLD---YRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDI 518
           KFS+++     R  GY  + + R +  S       L A +   I   +++ LH  +W   
Sbjct: 450 KFSQVVSKATLRDNGY-NLNIPRYVDSSPAAQSWDLHATMLGGIPNSEIAQLH-PYWQAF 507

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
            +           A S +  + +    K  +      FI AF +AF   D 
Sbjct: 508 PQLHDALFVAKSAAYSELAIAKQDVNVKITQNAQVGDFIRAFNSAFAGFDD 558


>gi|302668597|ref|YP_003833045.1| type I restriction modification system M subunit HsdM [Butyrivibrio
           proteoclasticus B316]
 gi|302397561|gb|ADL36463.1| type I restriction modification system M subunit HsdM [Butyrivibrio
           proteoclasticus B316]
          Length = 531

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 109/568 (19%), Positives = 219/568 (38%), Gaps = 68/568 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPTRSA 54
             +  L   +W  A+ L G     ++   +L     + L  +            EP    
Sbjct: 2   AESKDLLAVLWSGADVLRGKMDANEYKTYLLGLVFFKYLSDSYLAKVYDLLNDEEPENLD 61

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNL--------ESYI 104
             +K       + D E+ ++    S + T   + + +++ +    NN          + I
Sbjct: 62  DAQKAYEEAMKSDDSEALLEELKDSLHYTLDPDLTYTSILNAAKNNNFNREKLQSAFNRI 121

Query: 105 ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               +   ++F D D  S        +++  +  + K     +L        V+ N YE+
Sbjct: 122 QESDELFNSLFADVDLYSNRLGTGDTKQSATIADVIKVLEDADLI--HAKGDVLGNAYEY 179

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP     +   + +   +            +YDP  G+G  + 
Sbjct: 180 LIGQFASETGKKAGEFYTPHGPAQILCRIAMLGQEE------KKGLQVYDPCMGSGSLML 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             M++  +       P  +  +GQEL P T+ +    M +  +  +     +++++ G T
Sbjct: 234 SCMHYSKE-------PDYIKYYGQELMPSTYNLARMNMFLHGVLPE-----NQHLRNGDT 281

Query: 282 LSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L  D  T +   F     NPP+   W     A E   ++     +G  L   S     FL
Sbjct: 282 LDADWPTDEETEFDVVTMNPPYSANWS----AAEGFKQDERFMDYGGVLAPKSKADYAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF    G+ E  IR  LL+N  I A++ LP+++F+
Sbjct: 338 LHGFYHLKP----NGTMAIVLPHGVLFR---GASEGAIREILLKNGSIYAVIGLPSNMFY 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +       KK+ ++ ++    +L++Y +R
Sbjct: 391 NTSIPTCIIVLKKHREGR---DVLFIDASQHFEK----EKKQNVMKEEHIDHVLELYKNR 443

Query: 460 EN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS-PLHQSFW 515
           ++  K + +  +         + + R +  S   ++  L  L +++           +  
Sbjct: 444 QSVEKEAYLASFEDIEKNDFNLNIPRYVDTSEEEEQIDLKALSSELKNTNKEIKEANTSL 503

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSN 543
           L ++  ++        A + + + IK +
Sbjct: 504 LGMMNELVFSSDDIKAAMTELIDVIKED 531


>gi|237751050|ref|ZP_04581530.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
 gi|229373495|gb|EEO23886.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
          Length = 501

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 192/546 (35%), Gaps = 68/546 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++  A+ L  +    ++  ++L    L+ +  + E     +  +  
Sbjct: 1   MAKIKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
                +        +A   F+   +   S L S           +     I   +   K 
Sbjct: 60  DAEDKD------EYIAKNIFFVPQDSRWSALLSKAKSPQIGKDLDYALDLIEKDNPQLKG 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         +     +  L  +      I L+ +   D ++ +I+E+ +  F     + 
Sbjct: 114 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSD-ILGHIFEYFLGEFALSEGKK 168

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP+ VV L  A+L   +             ++DP CG+GG    +   V +   H
Sbjct: 169 GGQFYTPKSVVELLVAMLEPYNG-----------RVFDPCCGSGGMFVQSERFVRE---H 214

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R+++S   +  S+      +   D     +  
Sbjct: 215 QGKISDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +             R+  G P  ++ +  ++ H  + L       
Sbjct: 270 FIIANPPFNATDWGSEALENDV-------RWQYGTPPSTNANYAWISHFIHHL----APK 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  VL+   L      S E +IR+ L+E++LIE IV LP  LF  T I   LW +   
Sbjct: 319 GRAGFVLAKGSL--TSNTSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 376

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR------ENGKFSRM 467
           K+         I+A  L   I    +K RI+      +I + Y         ++G++S +
Sbjct: 377 KSH---NNTLFIDARSLGELI---NRKNRILTQSDIAKITETYHKWQKAQEQQSGEYSDI 430

Query: 468 LDY-----RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           L +     +        VL P R   + +       E + T  K     Q     IL   
Sbjct: 431 LGFCKSVSKEEIANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEERILSEK 490

Query: 523 MQQIYP 528
           + +   
Sbjct: 491 ILKNLE 496


>gi|225619379|ref|YP_002720605.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1]
 gi|225214198|gb|ACN82932.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1]
          Length = 500

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 202/510 (39%), Gaps = 56/510 (10%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + +   +   +W  ++ L G+   +++  VIL    L+ +    E   + + ++      
Sbjct: 4   SENDKDIKKELWAASDKLRGNIDASEYKHVILGLVFLKYISDKFEIRYNELVKEGFDMQD 63

Query: 65  SNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                      ++       Y +S      +G+      L+  I   +   K I      
Sbjct: 64  DAEAYREKNIFYLPEESRFDYISSHARSDEIGAIIDEAMLK--IEENNKKLKGILPKNYS 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              + +      L +I   FS I++      D ++ N+YE+ + +F +   +   +F TP
Sbjct: 122 RPELDK----RRLGEIIDLFSNIKIANKNKKD-ILGNVYEYFLSQFATAEGKRGGEFYTP 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V L   +L                 +YDP CG+GG    +   +    +H +    +
Sbjct: 177 SPIVKLLVEILEPYKG-----------RIYDPCCGSGGMFVQSAKFLE---AHSESVNNI 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE  P T  +C   + I  ++       +       T  +DL    +  Y L+NPP
Sbjct: 223 SVYGQESNPTTWKLCNMNVAIHGIDG------NLGKNNADTFFEDLHKNLKADYILANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F        DA++ ++      R+  G+P   + +  +L H+A+KL    +  G+A +VL
Sbjct: 277 FNMSDWG-ADALKDDY------RWKWGIPPNGNANYGWLSHIASKL----SESGKAGVVL 325

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ++  L      SGE  IR+ ++++DLIE I++LPT LF  T I   LW L+  K  +++G
Sbjct: 326 ANGSLST--QTSGEGLIRQNMIKDDLIECIISLPTQLFISTQIPVSLWFLNKDK--KQKG 381

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTF 473
            +  I+A +     R E + +R+++DD    I     S + GK       + +       
Sbjct: 382 HILFIDARNYG---RMESRVQRVLDDDDIEAIAKTVHSWQKGKGYKDIKGYCKSASLEEI 438

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
                 +     +    +       +A + 
Sbjct: 439 SKEDYILTTGRYVGLEEEDNKEEDFDAKMK 468


>gi|160946887|ref|ZP_02094090.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270]
 gi|158447271|gb|EDP24266.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270]
          Length = 526

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 126/558 (22%), Positives = 217/558 (38%), Gaps = 75/558 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-------- 54
             T   A L   IW  A+D+ G     DF + IL     R +   L              
Sbjct: 9   NETAQRAELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENLRDYFDKNEHLAGDP 68

Query: 55  -VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
             +   ++   +  D +S        F   S+   + + +     NL + +A+       
Sbjct: 69  NFKYADISDDEAKRDFKSGTIEEKGFFILPSQLFENVVANAKDNENLNTELANIFSDIEK 128

Query: 108 -------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMS 156
                   D+ K +FED D +S        EK   L  I    + I   +          
Sbjct: 129 SAIGAESEDDIKGLFEDVDTTSNRLGGTVAEKNKRLRDILTGIAQINFENFKDNHIDAFG 188

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  + S   +   +F TP+ V  L   +++D  + + K        +YDPTCG+
Sbjct: 189 DAYEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKEKINK--------VYDPTCGS 240

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L        D              GQE+      +    M +  +  +     + +I
Sbjct: 241 GSLLLQMKKQFDDHIIEEG------FFGQEINMTNFNLARMNMFLHNVNYN-----NFSI 289

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           ++G TL   L   ++ F   +SNPP+  KW  + D            RF P   L   S 
Sbjct: 290 KRGDTLLNPLHNDEKPFDAIVSNPPYSIKWIGEADPTLINDV-----RFAPAGKLAPKSY 344

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ I+ ++ L
Sbjct: 345 ADYAFIMHSLSYL----SSNGRAAIVCFPGIFYRKGA---ERTIRKYLIDNNFIDCVIQL 397

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+IAT + +++  KTE    KV  I+A+  +    N      I+ +     I+
Sbjct: 398 PENLFFGTSIATCVLVIAKNKTE---NKVLFIDASKEFKKETN----NNILEEKNISAIV 450

Query: 454 DIYVSRENGK-FSRML---DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKL 507
           + + +R + + FSR +   +     Y  + V   +      +   +  L  +I  T +K+
Sbjct: 451 EEFRNRTDKEYFSRYVYRTEIEENDY-NLSVSTYVEKEDTREVIDIKVLNKEIEETVKKI 509

Query: 508 SPLHQSFWLDILKPMMQQ 525
             L +S   +I+K +  +
Sbjct: 510 DEL-RSSINEIVKELEDE 526


>gi|301156219|emb|CBW15690.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 556

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 193/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 21  LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSDPENPLY 80

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRN---------- 98
           L     + D E                A   F+   +     + + +  N          
Sbjct: 81  LDRTFYDTDEEYQEALAAELENRDYYTADNVFWVPQQARWDEIKAVSILNIGAELPWGGK 140

Query: 99  ---------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    +    I   ++  K + +     +      +  ++     +F+    + + 
Sbjct: 141 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEP 200

Query: 150 V---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 201 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 250

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 251 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 306

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 307 D------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 353

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 354 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 407

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K   R+G+V  I+A  +      + +  R    
Sbjct: 408 VECMVALPGQLFTNTQIPACIWFLNRNKA--RKGEVLFIDARQIGYM---KDRVLRDFTA 462

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I D   + +          F +         +   VL P R     ++       
Sbjct: 463 DDIAKIADTLHAWQQSDGYEDQAAFCKSASLEEIASKEY-VLTPGRYVGTAEQEDDGVPF 521

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 522 AEK-MQNLTDLLKEQFAK 538


>gi|307608918|emb|CBW98318.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Legionella pneumophila 130b]
          Length = 533

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 100/522 (19%), Positives = 196/522 (37%), Gaps = 71/522 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  ++   +    +   G      +   IL    L+ +    +      +++Y       
Sbjct: 18  NQDAINKALMAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHFDEYQKQYGDEPELI 77

Query: 67  IDL---------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------------ 105
            ++         E  +K    S  +  + +   L            I             
Sbjct: 78  HEMMKNERFVIPEIILKNEDGSVRDQFQATFKNLWERRHEPGNGERIDLCLHAIEEANGT 137

Query: 106 SFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFS--GIELHPDTVPD-RVMSNIYE 160
              DNAK++F+D  F++     EK    +L  + ++F+   + L P  V    ++ N YE
Sbjct: 138 KLRDNAKSVFQDISFNTDKLGEEKQKNTILRHLLEDFAKPELNLRPSRVAGLDIIGNAYE 197

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI+ F +   + A +F TP +V  L   LL           P    ++ DP CG+G  L
Sbjct: 198 YLIKHFAASGGQKAGEFYTPPEVSSLMATLL----------DPQPGDSICDPACGSGSLL 247

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 + +              GQE    T ++    M +   +       +  I+ G 
Sbjct: 248 MKCGRLIRENHH----QKNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGD 296

Query: 281 TLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           T+        +     F    +NPPF       +     E +N   GRF  G+P  + G 
Sbjct: 297 TIRNPKLLDSKGHLMLFDIVTANPPFSLDKWGHE-----EAENDHFGRFRRGIPPKTKGD 351

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H+   L+      GR  +V+    LF G +   E +IR+ L+E +L++ ++ LP 
Sbjct: 352 YAFILHMIETLKPKT---GRMGVVVPHGVLFRGSS---EGKIRQKLIEENLLDTVIGLPE 405

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            LF+ T I   + I   +K+++   KV  I+A   + S +N    +  ++ D   +I++ 
Sbjct: 406 KLFYGTGIPAAILIFKKQKSDD---KVLFIDAAKEFKSGKN----QNQLSQDNIDKIIET 458

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           Y  R++  +++ +            +  P  +    ++  + 
Sbjct: 459 YKQRQSVDRYAYLASLDEIKENDYNLNIPRYVDTFEEEEEID 500


>gi|90961896|ref|YP_535812.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|90821090|gb|ABD99729.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
          Length = 529

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 114/536 (21%), Positives = 206/536 (38%), Gaps = 58/536 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------ALEPTRSAVREKYLAF 62
           +L   +   A  L       ++    L     + L          L   ++   E+    
Sbjct: 7   TLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKL 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTR-------NNLESYIASFSDNAK 112
              N D +  ++     F    E      + L S N          +  + I S     +
Sbjct: 67  YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNSIESQGKEFE 126

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            +F+D+D  S             I +  S I +L     P+  + N YE+LI++F SE  
Sbjct: 127 GLFDDYDLYSKRLGNTAQKQSDTISEVLSAIGKLEIVKTPEDTLGNAYEYLIKQFASESG 186

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  L   L L   D           T+YDPT G+G  L +   +V    
Sbjct: 187 KKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKYVEH-- 238

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                P  +   GQE+   T+ +    M++  ++      +++ ++   TL +D    + 
Sbjct: 239 -----PKRITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDWPVEEI 288

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   + NPP+  KW  +    + + +    G     LP  S     FL+H    L+  
Sbjct: 289 TNFDAVVMNPPYSHKWSANA-GFKDDPRFSAYG----VLPPKSKADYAFLLHGYYHLK-- 341

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP +LF+ T+I T + +
Sbjct: 342 --HSGVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVV 396

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           L   K +     V  I+A+  +  +    K +  + D+   +IL  Y  R++  K++ + 
Sbjct: 397 LKKDKQDR---DVLFIDASKDFEKV----KTQNELRDEDVEKILTTYKERKDIDKYAHLA 449

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +         +  P  +     +  +   E     R+ +   +   ++++  +  
Sbjct: 450 SFDEIKENEFNLNIPRYVDTFEPEPEINLDEVSKELRETNEKIKENEIELISMLKD 505


>gi|51594888|ref|YP_069079.1| type I restriction-modification system, methyltransferase subunit
           (N-6 DNA methylase) [Yersinia pseudotuberculosis IP
           32953]
 gi|51588170|emb|CAH19777.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Yersinia pseudotuberculosis
           IP 32953]
          Length = 863

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 211/538 (39%), Gaps = 59/538 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE 
Sbjct: 62  EEDADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++ +   D V+  IYE+L+ +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLLEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++       ++        +YDPT G+G  L +       
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNII------AYELKHKDTIKIYDPTSGSGSLLINIGEAFE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + K    +  + QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 233 --KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + W+           +    RF  GL   +     FL+H  
Sbjct: 291 QGSYYALHVDAVVSNPPYSQNWDPSFK-----DSDPRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E +IR+ L+E + I+ I+ LP ++FF T I
Sbjct: 344 YHLK----PDGIMAIVLPHGVLFR---GGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
            T + +L   K + +   V +++A+  +        K   +     ++I D  + RE   
Sbjct: 397 PTVILVL---KQKRQNTDVLVVDASKHFMK----EGKNNKLQASDIKRITDAVIKRESID 449

Query: 463 KFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
           KFS+++  +        + + R +  S       L A +   I   +++ LH  +   
Sbjct: 450 KFSQLVSKQTLRDNGYNLNIPRYVDSSAATPSWDLHATMLGGIPNSEIAELHNYWQAF 507


>gi|167631092|ref|YP_001681591.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593832|gb|ABZ85580.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 486

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 184/457 (40%), Gaps = 60/457 (13%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L G+ + +++  V+L    L+ +  + E   + +  +   F     D++++++   
Sbjct: 1   MADKLRGNIEASEYKHVVLGLIFLKYISDSFEEKYNELVAEGEGFEE---DIDAYME--D 55

Query: 78  YSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
             F+   E     +     +       ++    I   + + K +         + + +  
Sbjct: 56  NIFFVPPEARWDYIKEQAKQPTIGQIIDDAMVAIEKNNPSLKGVLPKNYARPELDKTKLG 115

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            L       FS      +     V+  +YE+ + +F         +F TP  +V L   +
Sbjct: 116 EL----IDLFSFKVGDKEAKAKDVLGRVYEYFLGKF----GSSEGEFYTPPSIVKLLVEM 167

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +                 +YDP CG+GG    +   V +   H      +  +GQE    
Sbjct: 168 IEPYKG-----------RIYDPCCGSGGMFVQSQRFVEE---HQGRRDDIHVYGQEYTAT 213

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +C   + IR +++      +   +   T + DL    R  Y L+NPPF  K      
Sbjct: 214 TWRLCKMNLSIRGIDA------NLGERDDDTFANDLHKSLRADYILANPPFNIKDWGAN- 266

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +     R+  GLP  ++ +  ++ H+ +KL    +  G A  V+++  +     
Sbjct: 267 ------RLANDARWKYGLPPANNANYAWIQHIISKL----SPSGVAGFVMANGSMLT--N 314

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----EERRGKVQLIN 426
            S ESEIR+ ++E  L++ IV +P++LF+   I   LW LS  K      +R  ++  I+
Sbjct: 315 TSNESEIRKNIIEAKLVDCIVTMPSNLFYTVTIPVCLWFLSKNKMPKGLRDRSDEILFID 374

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           A  +      E +K R+++++  ++I   Y + + G+
Sbjct: 375 ARKMGYM---EDRKHRVLSEEDIQRIAQTYRNWKKGE 408


>gi|19881211|gb|AAM00826.1|AF486545_4 HsdM [Campylobacter jejuni]
          Length = 500

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 193/518 (37%), Gaps = 55/518 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + +WK+A+ L  +    ++  ++L    LR +  +       + ++    G    D 
Sbjct: 8   KLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQ-DDGADPEDA 66

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFSSTI 124
           + ++    +     S Y+     + N +     +     I   +D  K +         +
Sbjct: 67  DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL 126

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                +  L ++      I          V+ +++E+ +  F     +    F TP+ VV
Sbjct: 127 ----DSKCLGELIDLIGNIAFD-TGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVV 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L                 ++DP CG+GG    +   V    SH      +  +G
Sbjct: 182 ELLVTMLEPYKG-----------RVFDPCCGSGGMFVQSEEFVK---SHQGRLDDISIYG 227

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    + IR++ES      ++      +   D     +  + ++NPPF   
Sbjct: 228 QESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFNDS 282

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +            GR+  G+P  S+ +  ++ H    L      GG A  VL+   
Sbjct: 283 DWSGELLEND-------GRWKYGVPPASNANYAWIQHFLYHL---SPNGGVAGFVLAKGA 332

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L +      E+ IR+ L+E+DLI+ IV LP  LF  T I   LW +  +K  +   K   
Sbjct: 333 LTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLF 390

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-------KFSRMLDYRTFGYRR 477
           I+A DL T I    ++ + +N D   QI +IY + +NG        F + +         
Sbjct: 391 IDARDLGTRI---NRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELS 447

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             VL P R   + D       + D  + +L    +S  
Sbjct: 448 Y-VLTPGRYVGLADSDD--EFDFDTRFNELLAKLKSQI 482


>gi|212716798|ref|ZP_03324926.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660276|gb|EEB20851.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM
           16992]
          Length = 853

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 105/513 (20%), Positives = 196/513 (38%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L               +      
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETELMRLKASDFTEDDLPQLT 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             N D+  FV+      +A  + ++T     +    +N R+ L ++  + +   K +F+ 
Sbjct: 62  EDNPDIVEFVQGECGYFIAYDNLFSTWIKQGNDFEISNVRDALSAFSRNINPAHKKVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +        V+  IYE+LI  F + 
Sbjct: 122 I-FDTLQTGLSKLGTDARSQSKAARDLIYLIKDIPMDG-RQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLQGREQI------KIYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  ++ + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PDSIMYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLEDDWPWFDTLEN 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + W+     ++         RF  G+   S     FL+H 
Sbjct: 291 KEETYNPLFVDAVVSNPPYSQNWDPTDKEID--------PRFSYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E +IR+ L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLRA----DGIMTIVLPHGVLFR---GGEEGQIRKNLIENRHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L  ++ ++R   V +++A+  +        K   +     ++I+D+   +R  
Sbjct: 396 IPTIVMVLRKKRDDDR---VLIVDASKHFIK----DGKNNKLQASDIKRIVDVVSNNRTV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +    D   
Sbjct: 449 PKFSRLVSIDEIRANDYNLNIPRYVDSSEDAET 481


>gi|300727765|ref|ZP_07061149.1| type I restriction-modification system methyltransferase subunit
           [Prevotella bryantii B14]
 gi|299774975|gb|EFI71583.1| type I restriction-modification system methyltransferase subunit
           [Prevotella bryantii B14]
          Length = 513

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 113/524 (21%), Positives = 204/524 (38%), Gaps = 52/524 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYL 60
            + T S   L +F+W  A  L G      + + I P    +R+     E     V E   
Sbjct: 13  ADETISLDELKSFLWSAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFDGFVAEGGE 72

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKA 113
            + G      +     G  + +  E +       +    +    N  E            
Sbjct: 73  EYAGMQAAELAIRIPDGAHWRDVREVTENVGQRLVEAFIAIEQANPGEEADGRVIGGLDG 132

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF   D  +   ++    ++  + ++FS   L   + P   M   YE+L+ +F  +    
Sbjct: 133 IFGPKDGWTNKNKMPD-HIITSLIEDFSRYNLGLSSCPADEMGQAYEYLVGKFADDAGNT 191

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A++F T R VV L   +L           P    ++YDPTCG+GG L   ++ +   G  
Sbjct: 192 AQEFYTNRTVVTLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDFLRQKGLP 241

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
                 +   GQE+   T ++    + +  +E         +I +  TL+   F      
Sbjct: 242 W---QGVKVFGQEINALTASIARMNLYLNGVED-------FSIVREDTLAHPAFVDGSHL 291

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++F   L+NPP+               ++ + GR   G P        F+ H+   +   
Sbjct: 292 RKFDIVLANPPYSISEWNRSA-----FEHDKWGRNMWGTPPQGRADYAFIQHIVASM--- 343

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  GR AI+L    LF       ESE+R+ L+ +D IEA++ L  +LF+   +   + I
Sbjct: 344 NNDHGRCAILLPHGILFRNE----ESEVRKGLVLSDKIEAVIGLGPNLFYNAPMEACILI 399

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRML 468
            +NRK +E + KV  INA   +   R   +    + +   ++I + Y S  +   F R++
Sbjct: 400 CNNRKAKELKNKVIFINAK--YEVTRKNAES--FLENSHIKKIAEAYKSVNDIADFKRLV 455

Query: 469 DYRTFGYRR--IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           D+      R  + + + + +S I     ++  +A  +W +   L
Sbjct: 456 DFEEIEKNRFDLSIQKYVYISEINKAEAVSAEDALASWERQHSL 499


>gi|313123730|ref|YP_004033989.1| hsdm-type i modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280293|gb|ADQ61012.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 532

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 109/537 (20%), Positives = 206/537 (38%), Gaps = 67/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M E   + + L + ++  A+ L       ++   +L     + L               +
Sbjct: 1   MVEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESY 103
            T    ++ Y         LE      GY       Y+     +       N   +  + 
Sbjct: 60  ITLDEAQKIYEESLEEEDLLEEVKDELGYLIEPEYTYTKILNNANDGSFQLNQLGDAFNK 119

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           + S   + + +F+D+D  S        ++   +  + K    +EL     P   + + YE
Sbjct: 120 LESQGSSFEGLFDDYDLYSKRLGQNLQKQTDTIAGVLKAIGKLEL--VKTPGDTLGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F SE  + A +F TP+++  L   L L   D           ++YDP  G+G  L
Sbjct: 178 YLISQFASESGKKAGEFYTPQEISELLARLTLVGKD------YSSGMSVYDPAMGSGSLL 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   +V +          +  +GQE+   T  +    M++  ++       ++ ++ G 
Sbjct: 232 LNFRKYVPNSSR-------ITYYGQEINTSTFNLARMNMILHHVD-----LANQKLRNGD 279

Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL +D    +   F   + NPP+  KW  DK  ++    +    ++G  LP  S     F
Sbjct: 280 TLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD----DPRFSKYGV-LPPKSKADYAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ LP +LF
Sbjct: 335 LLHGFYHLK----HSGAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLPANLF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T I T + +L   K +     V  I+A+  +  +    K +  +  +   +IL  Y  
Sbjct: 388 YSTGIPTTIVVLKKDKQDR---SVLFIDASKEFEKV----KTQNKLRQEDIDKILKTYEE 440

Query: 459 R--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           R  +  K++ +  +         +  P    ++        ++     ++L  + Q 
Sbjct: 441 RPADVEKYAHLASFDEIKENDFNLNIP---RYVDTFEPEPEIDLRDVAKELRDIDQQ 494


>gi|208780344|ref|ZP_03247685.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
 gi|208743712|gb|EDZ90015.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
          Length = 512

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 97/541 (17%), Positives = 192/541 (35%), Gaps = 64/541 (11%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + ++ + 
Sbjct: 1   MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAELQSEE 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
            A      +      +    F+  ++   S L +           +     I   +++ K
Sbjct: 61  WADPEDKDEY-----LESNIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKMLEPYKG-----------RVFDPCCGSGGMFVQSEKFVE--- 217

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           SH      +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 218 SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P  S+ +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGELLRND-------ARWQYGTPPASNANYAWIQHFLYHL----A 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL+   L      SGE +IR+ L+E +L++ IV LP  LF  T I   LW + 
Sbjct: 322 PTGVAGFVLAKGAL--TSNTSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFIK 379

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +  +    +  I+A +         +  +  +DD   +I   Y + +    S + D +
Sbjct: 380 RGRKTK---DILFIDARN---KGHLINRITKEFSDDDITEIAQTYHNWKLSCHSEL-DSK 432

Query: 472 TFGYRRIK-------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +  Y  IK             ++++L       LE        +    S    + + M Q
Sbjct: 433 SHKYEDIKGFCKSASYEEVAELNYVLTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQ 492

Query: 525 Q 525
           +
Sbjct: 493 E 493


>gi|86149451|ref|ZP_01067682.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596435|ref|ZP_01099672.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612527|ref|YP_001001194.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167006086|ref|ZP_02271844.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|218563146|ref|YP_002344925.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|19881206|gb|AAM00822.1|AF486544_5 HsdM3 [Campylobacter jejuni]
 gi|19881245|gb|AAM00854.1|AF486551_5 HsdM [Campylobacter jejuni]
 gi|19881287|gb|AAM00889.1|AF486558_5 HsdM [Campylobacter jejuni subsp. jejuni 81-176]
 gi|85840233|gb|EAQ57491.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|87249780|gb|EAQ72739.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|88191276|gb|EAQ95248.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360852|emb|CAL35653.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926752|gb|ADC29104.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315926723|gb|EFV06101.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929701|gb|EFV08876.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 500

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 193/518 (37%), Gaps = 55/518 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + +WK+A+ L  +    ++  ++L    LR +  +       + ++    G    D 
Sbjct: 8   KLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQ-DDGADPEDA 66

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFSSTI 124
           + ++    +     S Y+     + N +     +     I   +D  K +         +
Sbjct: 67  DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL 126

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                +  L ++      I          V+ +++E+ +  F     +    F TP+ VV
Sbjct: 127 ----DSKCLGELIDLIGNIAFD-TGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVV 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L                 ++DP CG+GG    +   V    SH      +  +G
Sbjct: 182 ELLVTMLEPYKG-----------RVFDPCCGSGGMFVQSEEFVK---SHQGRLDDISIYG 227

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    + IR++ES      ++      +   D     +  + ++NPPF   
Sbjct: 228 QESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFNDS 282

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +            GR+  G+P  S+ +  ++ H    L      GG A  VL+   
Sbjct: 283 DWSGELLEND-------GRWKYGVPPASNANYAWIQHFLYHL---SPNGGVAGFVLAKGA 332

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L +      E+ IR+ L+E+DLI+ IV LP  LF  T I   LW +  +K  +   K   
Sbjct: 333 LTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLF 390

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-------KFSRMLDYRTFGYRR 477
           I+A DL T I    ++ + +N D   QI +IY + +NG        F + +         
Sbjct: 391 IDARDLGTRI---NRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELS 447

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             VL P R   + D       + D  + +L    +S  
Sbjct: 448 Y-VLTPGRYVGLADSDD--EFDFDTRFNELLAKLKSQI 482


>gi|290957396|ref|YP_003488578.1| type I restriction modification system protein [Streptomyces
           scabiei 87.22]
 gi|260646922|emb|CBG70021.1| putative type I restriction modification system protein
           [Streptomyces scabiei 87.22]
          Length = 813

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 112/522 (21%), Positives = 206/522 (39%), Gaps = 78/522 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L   +W++ ++L G    + +   IL    ++ +    +   +++ +  +  GGS 
Sbjct: 6   KKSDLYGSLWRSCDELRGGMDASQYKDYILTLLFVKYVTDKAKSDPNSLID--VPVGGSF 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA- 125
            D+ +                    G     + +   I   ++    + +  D +     
Sbjct: 64  DDMVALK------------------GDKEIGDKINKIIGRLAEANPTLVKVIDLTDFNDE 105

Query: 126 -----RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  E    L K+   F+ ++        D ++ + YE+L+R F +E  +    F T
Sbjct: 106 EKLGKGKEMQDRLSKLVTIFADLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYT 165

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +V  +   ++          S     T+YDPTCG+G  L    +         + P  
Sbjct: 166 PAEVSRILAKVV------GIDPSTRQDHTVYDPTCGSGSLLLKVAD---------EAPRG 210

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
           +  +GQE +  T A+    M++   E         +I +G T++   FT     + F + 
Sbjct: 211 ITIYGQEKDNATWALAKMNMILHDNED-------ADILKGDTITNPQFTTGRQLRTFDFA 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K   +    +        GRF  G P   +G   FL+H+   L+      G+
Sbjct: 264 VANPPFSIKSWSNGLEND-------YGRFEYGRPPEKNGDYAFLLHILKSLK----STGK 312

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AAI+L    LF G A   E+ IRR LL    I+ I+ LP +LF+ T I   + +L     
Sbjct: 313 AAIILPHGVLFRGHA---EASIRRELLRRGYIKGIIGLPANLFYGTGIPACIIVLDKENA 369

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG 474
           + R G V +I+A+  +    N+ +    +      +I+D++  + E  ++SRM+      
Sbjct: 370 QARTG-VFMIDASKGFIKDGNKNR----LRSQDIHKIVDVFNRQVEIERYSRMVPLHEVA 424

Query: 475 ----YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
                  + + R +  S   D   L A L   I    L  L+
Sbjct: 425 DPKNDYNLNIPRYIDASEPEDIQDLHAHLHGGIPDHDLDALN 466


>gi|254372254|ref|ZP_04987745.1| hypothetical protein FTCG_01320 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569983|gb|EDN35637.1| hypothetical protein FTCG_01320 [Francisella novicida GA99-3549]
          Length = 503

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 93/535 (17%), Positives = 187/535 (34%), Gaps = 65/535 (12%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + ++ + 
Sbjct: 1   MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAELQSEE 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
            A      +      +    F+  ++   S L +           +     I   +++ K
Sbjct: 61  WADPEDKDEY-----LESNIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKMLEPYKG-----------RVFDPCCGSGGMFVQSEKFVE--- 217

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           SH      +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 218 SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P   + +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGELLRND-------ARWQYGTPPAGNANYAWIQHFLYHL----A 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL+   L      SGE +IR+ L+E +L++ IV LP  LF  T I   LW + 
Sbjct: 322 PTGVAGFVLAKGAL--TSNTSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFIK 379

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------F 464
             +   +   +  I+A +         ++ +  +DD   +I   Y + +  K       F
Sbjct: 380 RGR---KTKDILFIDARN---KGHLINRRTKEFSDDDITEIAQTYHNWKVDKDYEDIKGF 433

Query: 465 SRMLDYRTFGYRRIKVL--RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            +   Y         +   R + +  + D    A     +  +    + Q   L+
Sbjct: 434 CKSASYEEVAELNYVLTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQEEALN 488


>gi|310765245|gb|ADP10195.1| Type I restriction modification DNA modification domain protein
           [Erwinia sp. Ejp617]
          Length = 568

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/523 (19%), Positives = 179/523 (34%), Gaps = 93/523 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L +  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQKELTKLF 60

Query: 56  -------------REKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNT- 96
                        RE+Y +       ++  ++V  Y      F+        TL S    
Sbjct: 61  REVGNADNSYAIPREEYDSEAAYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAAL 120

Query: 97  ------------RNNLESYIASFSDNAKAIFE--DFDFSSTIARLEKAGLLYKI----CK 138
                       +      ++   DNA    E  +      I R+    L  ++      
Sbjct: 121 PVGSVLGLDAKGKEVTLRSVSLLIDNALDKIEQSNDKLKGIINRIAHYQLGNEVLIGLIN 180

Query: 139 NFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            FS                    ++ ++YE+ + +F     +    + TP+ +V L   +
Sbjct: 181 TFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEM 240

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----PILVPHGQ 245
           L                 +YDP  G+GGF   +   +       +         +V +GQ
Sbjct: 241 LQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQ 289

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    M IR +      D     +   TL  D     R  + ++NPPF  K 
Sbjct: 290 ESNPTTWRLAAMNMAIRGI------DFEFGTKNADTLLDDQHPDLRADFVMANPPFNMKE 343

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K     R+  G P   + +  ++ H+ + L       G  A++L++   
Sbjct: 344 W-------WNAKLENDVRWQYGTPPQGNANFAWMQHMIHHL----APKGAMALLLANG-- 390

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-----TEERRG 420
                 + E EIRR L+E DL+E +VALP  LF  T I   +W+L+  K        R+G
Sbjct: 391 SMSSNSNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGGNGKAHRKG 450

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +V  I+A         + +  R    +   +I D + + +  K
Sbjct: 451 EVLFIDARQTGFM---KDRVLRDFTTEDIAKIADTFHAWQTDK 490


>gi|187933312|ref|YP_001886270.1| type I restriction-modification system, M subunit [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721465|gb|ACD22686.1| type I restriction-modification system, M subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 529

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/519 (19%), Positives = 197/519 (37%), Gaps = 67/519 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR----------- 52
              +  S+ N +W  A +L G    +++   IL F   R L    E              
Sbjct: 1   MNNNIKSITNKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEEYLLKNNVIDVIEG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIAS 106
            ++ E Y +    +   +    ++    Y  +             +      + ++   +
Sbjct: 61  ESINESYNSQVDESELEDYLQDISASLGYAIAPKDTWQSLIDKINDSQVIPSDYQTIFDN 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ NA          + +F D +   +    +  E+A  L  I K    IE   +   D 
Sbjct: 121 FNKNAELNKEAVKDFRGVFNDINLGDSRLGNSTNERAKSLNNIVKLVDSIEYKGNDGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++ +       E    + ++YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTEGV-----EKSDELFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +            +   GQEL   T+ +    +++  +  +     +
Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHGISYNNMVLSN 287

Query: 274 KNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +  +          G    + F   ++NPP+  KW+ D+  + K+ +  E G+  P   
Sbjct: 288 ADTLESDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSEYGKLAPA-- 344

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H    L    N  G  AIVL    LF G A   E +IR  L+  + ++ 
Sbjct: 345 --SKADYAFILHSIYHL----NKTGTMAIVLPHGVLFRGAA---EGKIREALIGKNYLDT 395

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+I T + +L   +  +    +  I+A++ +   +N    +  + D+  
Sbjct: 396 IIGLPANLFYGTSIPTVILVLKKNRENK---DILFIDASNDFEKNKN----QNNLRDEDI 448

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMS 487
            +I+  Y  R++  K++ +            +  P  + 
Sbjct: 449 DKIIKTYKERKDAPKYAHLASIEEIRENDFNLNIPRYVD 487


>gi|15646013|ref|NP_208194.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2314576|gb|AAD08446.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 817

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 130/643 (20%), Positives = 246/643 (38%), Gaps = 75/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KARN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G     + L   IA  +D    K + +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGDKEIGDKLNKIIAKIADQNELKGVIDSVDFNDNT 103

Query: 125 ARLEKAGLL---YKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              E   ++     + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMMDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L         +    +++YDP CG+G  L  A +   + G        L
Sbjct: 164 SEVSL------LSSLLLGIDANTRQDKSIYDPACGSGSLLLKASSLAGEKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +       + +    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCRMNMILHNSATADIAKGGSSTLSNPLFTTENGMLKTFDYVVANPP 269

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 270 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGA 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 326 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 382

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 383 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNAYKEIPYYSKMVSLEEISAN 437

Query: 477 RIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +  P  ++   +       L          K      + +  + K +   ++     
Sbjct: 438 DYNLNIPRYIAAKPESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNTLFKKSDK 497

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRADPVTDVNGEW 581
           ES+     +    K L +++S  ++F  + +NAF R D         P  +P T +  E 
Sbjct: 498 ESYYALKTECENIKELIIQSSEFQTFHASVLNAFDRLDLFETFDHLEPGFNPKTLI--ES 555

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E +  L+    Y  F    +  + D +    F D
Sbjct: 556 VCSKVLKEFEKIEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 598


>gi|300866159|ref|ZP_07110878.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506]
 gi|300335838|emb|CBN56038.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506]
          Length = 527

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 114/535 (21%), Positives = 201/535 (37%), Gaps = 73/535 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA- 61
              G+       +W  A+ L G     ++  ++L    L+ +    E     +    L  
Sbjct: 12  NGKGANLGFEEKLWAAADKLRGQMDSAEYKHIVLGLIFLKSISDQFEERYDQLEIWGLDS 71

Query: 62  -------FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
                   G      E    +    F        S L S     N    I +  D A  +
Sbjct: 72  SSQFSLPDGNDKFTEEQDCGLTDNRFEIPESVRWSNLKSQANLLN----IGNLIDEAMMV 127

Query: 115 FEDFD--FSSTIARLE---KAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGS 168
            E  +   SS + +         L ++    + I+L         ++  +YE+ + RF +
Sbjct: 128 IEKENSSLSSILPKAYSSLDPRRLSELIAIINTIDLGEKNSSSKDILGRVYEYFLGRFAN 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +G  +F TP+ VV L   +                  +YDP CG+GG    +   V 
Sbjct: 188 WEGKG-GEFYTPQSVVKLLVEMTQPYQG-----------KIYDPCCGSGGIFVQSEKFVL 235

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G        ++ +GQE    T  +C   + IR +E+      +       TL+ DL  
Sbjct: 236 AAGGKA---NDILIYGQESNQTTWRLCKMNLAIRGIEA------NIGECNADTLNSDLHP 286

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +  + L+NPPF     +        ++  +  R+  G+P  S+ +  ++ H+   L  
Sbjct: 287 DLKADFILANPPFNMSDWEG-------YRLHQDQRWHYGIPPASNANFAWIQHIIYHL-- 337

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  G A  VLS+  L +G+    E EIR  ++E+DLI+ IVALP+ LF+ T IA  LW
Sbjct: 338 --SDRGIAGFVLSNGSLNHGQ---VEGEIRSKIIEDDLIDCIVALPSQLFYTTQIAASLW 392

Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------- 457
            ++  K +    +R G+   I A +         +  R I DD+  +I + Y        
Sbjct: 393 FIAKNKRDDKWRDRAGESLFIYAANFGQMA---DRTHRTIADDEIAKIANTYNLWRSRDR 449

Query: 458 ---SRENGKFSRMLDYRTFGYRRIKVL--RPLRMSFILDKT-GLARLEADITWRK 506
               ++   F +        Y ++ ++  R +     L K   +  L A+ T  +
Sbjct: 450 INEYKDIPGFCKSATLEEIRYHKMSLVPGRYVGFDENLTKQWDITELRAEFTDVE 504


>gi|325982846|ref|YP_004295248.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
 gi|325532365|gb|ADZ27086.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
          Length = 549

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 101/573 (17%), Positives = 194/573 (33%), Gaps = 92/573 (16%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +        L   +WK A  L  +    ++  V+L    L+ +  A E     + +  
Sbjct: 1   MAKTKAIKTEPLEKQLWKAACKLQKNIDAAEYKHVVLGLMFLKYISDAFEELHDRLEKGE 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
               G++ + +   + A   F+  +E     L +   +       +     I   + + K
Sbjct: 61  GDLVGADPEDKDEYR-AENVFFVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLK 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +        L ++      I L         V+ +++E+ +  F     
Sbjct: 120 GVLPKVYARQNL----DPTSLGELIDLIGNIALGDAKARSQDVLGHVFEYFLGEFALAEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR +V L   +L                 ++DP CG+GG    +   V +  
Sbjct: 176 KQGGQFYTPRSIVELLVNMLEPYQG-----------RVFDPCCGSGGMFVQSEKFVEE-- 222

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            H      +  +GQE    T  +    + IR ++S   +  ++      +   D     +
Sbjct: 223 -HQGRIDDISIYGQESNQTTWRLAKMNLAIRGIDSSQVKWNNEG-----SFLNDAHKDLK 276

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF       +             R+  G P   + +  +L H    L    +
Sbjct: 277 ADFIIANPPFNVSDWSGEQLRGD-------ARWQYGTPPPGNANFAWLQHFIYHL----S 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G A +VL+   L      SGE +IR+ L+ + +LI+ IV LP  LF  T I   LW L
Sbjct: 326 PTGIAGVVLAKGAL--TSKTSGEGDIRKRLITDGNLIDCIVNLPAKLFLNTQIPAALWFL 383

Query: 411 SNRKT--------------------------------EERRGKVQLINATDLWTSIRNEG 438
           +  +                                   R  ++  I+A +L   I    
Sbjct: 384 NRNRAGMDIGGHAKTIVGANNHLPLQNPPQQNPPQYHHPRTHEILFIDARNLGHLI---N 440

Query: 439 KKRRIINDDQRRQILDIYVSRENGKF----SRMLDYRTFG--YRRIKVLRPLRMSFILDK 492
           ++ + ++ D  +QI + Y +  N       + +  Y         + V R   + ++L  
Sbjct: 441 RRTKELSHDDIQQIANTYHAWRNPAVIPAQTGIQPYEDIKGFCASVPVERVAELDYVLTP 500

Query: 493 ---TGLARLEADITW-RKLSPLHQSFWLDILKP 521
               GL   E D  +  + + L   F   + + 
Sbjct: 501 GRYVGLPDEEDDFNFPERFAALKAEFEAQLQEE 533


>gi|300813147|ref|ZP_07093523.1| type I restriction-modification system, M subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300495862|gb|EFK31008.1| type I restriction-modification system, M subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 532

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 112/537 (20%), Positives = 206/537 (38%), Gaps = 67/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M E   S  SL + ++  A+ L       ++   +L     + L               +
Sbjct: 1   MAEEN-SKVSLQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESY 103
            T    ++ Y         LE      GY       Y+     +       N   +  + 
Sbjct: 60  ITLDEAQKIYEESLEEEDLLEEVKDELGYLIEPEYTYTKILDNANDGSFQLNQLGDAFNK 119

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           + S   + + +F+D+D  S        ++   +  + K    +EL     P   + + YE
Sbjct: 120 LESQGSSFEGLFDDYDLYSKRLGQNLQKQTDTIAGVLKAIGKLEL--VKTPGDTLGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F SE  + A +F TP++V  L   L L   D           ++YDP  G+G  L
Sbjct: 178 YLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSGSLL 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   +V +          +  +GQE+   T  +    M++  ++       ++ ++ G 
Sbjct: 232 LNFRKYVPNSSR-------ITYYGQEINTSTFNLARMNMILHHVD-----LANQKLRNGD 279

Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL +D    +   F   + NPP+  KW  DK  ++    +    ++G  LP  S     F
Sbjct: 280 TLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD----DPRFSKYGV-LPPKSKADYAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ LP +LF
Sbjct: 335 LLHGFYHLK----HSGAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLPANLF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T I T + +L   K +     V  I+A+  +  +    K +  +  +   +IL  Y  
Sbjct: 388 YSTGIPTTIVVLKKDKQDR---SVLFIDASKEFEKV----KTQNKLRQEDIDKILKTYEE 440

Query: 459 R--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           R  +  K++ +  +         +  P    ++        ++     ++L  + Q 
Sbjct: 441 RPADVEKYAHLASFDEIKENDFNLNIP---RYVDTFEPEPEIDLRDVAKELRDIDQQ 494


>gi|298375955|ref|ZP_06985911.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_19]
 gi|298266992|gb|EFI08649.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_19]
          Length = 549

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 110/557 (19%), Positives = 203/557 (36%), Gaps = 61/557 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKY--------- 59
            L   +W+ A+DL G     DF   +L F  LR L     E T+  +   Y         
Sbjct: 8   ELGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYLSDNYIEATKKELGGDYPDKAPEELK 67

Query: 60  ---------LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIA- 105
                    L +  +  D+  F K      +   E    ++     +    ++L   +  
Sbjct: 68  ERGVSTPLQLWYRENPEDVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDDLLKTLEK 127

Query: 106 --------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVM 155
                   SF    + +F + + +S             +CK  + I       +    ++
Sbjct: 128 GFKYIENESFDRAFQGLFSEINLNSDKLGKNYEERNALLCKVITKIAEGIAQFSTDTDIL 187

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  F +   + A +F TP+ +  + + ++              +  + D  CG
Sbjct: 188 GDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTQDPKSGMKKKLERVLDFACG 247

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSK 274
           +G  L +  + +   G +         +GQE    T+ +    ML+  + +S+       
Sbjct: 248 SGSLLLNVRHRMKANGGNIG-----KIYGQEKNITTYNLARMNMLLHGVKDSEFEIHHGD 302

Query: 275 NIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           ++     +  ++   K+  F   ++NPPF  +WE        E    +      GL   S
Sbjct: 303 SLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPT------EEMGKDFRFNNYGLAPKS 356

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H  + L+      G  AI+L    LF G A   E  IR  LL++  I+A++ 
Sbjct: 357 AADFAFLLHGFHFLKQ----DGTMAIILPHGVLFRGGA---EERIRTKLLKDGNIDAVIG 409

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T I   + +L   K   +   V  INA+D       +GK++  +      +I
Sbjct: 410 LPANLFFSTGIPVCILVLKKCK---KSDDVLFINASD--KENFEKGKRQNKLRTKDIDKI 464

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           +D Y  R E  ++SR +           +     +S   +   +  L+ +    +L    
Sbjct: 465 IDTYKQRKEEERYSRPVSMDEIERNGYNLNISRYVSIAKEDVKIDLLQVNKKLIELESKI 524

Query: 512 QSFWLDILKPMMQQIYP 528
                   K + +   P
Sbjct: 525 ADASERHNKFLAELGLP 541


>gi|328676719|gb|AEB27589.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida Fx1]
          Length = 522

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/557 (18%), Positives = 219/557 (39%), Gaps = 70/557 (12%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+     +  S+   +W +A  L G  + +++  ++L    L+ +    E  R  +  +
Sbjct: 1   MTQAKNKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                 + ID+  F       FY   E   S +     ++++        S I   + + 
Sbjct: 61  G---KEAFIDMVEFY-TMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSL 116

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K    D  FS     + K   L     N + I        + ++  +YE+ + +F     
Sbjct: 117 KGALPDNYFSRLGLDVSKLSSLIDTINNINTI----ADKGNDIVGRVYEYFLSKFAIAEG 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G  +F TP+ +V+L   ++                 +YDP CG+GG    ++  +    
Sbjct: 173 KGKGEFYTPKSIVNLIANMIEPYKG-----------KIYDPACGSGGMFVQSIKFIE--- 218

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +H      +  +GQE    T+ +    + IR + +      +       T  KD     +
Sbjct: 219 AHKGNKKDISIYGQEYTGTTYKLAKMNLAIRGISA------NLGDVPADTFFKDQHPDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +
Sbjct: 273 ADFIMANPPFNQKDWRGANELLDDPRWA-----GYDVPPKSNANYGWILNIVSKL----S 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L     G  E +IR+ L+ENDL+EAI+ LP ++F+ TNI+  +WIL+
Sbjct: 324 QNGVAGFILANGAL---SGGGEEYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWILN 380

Query: 412 ----------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
                     N K +  R + + I   DL        KK    +++  ++I D Y + ++
Sbjct: 381 ANKKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEKKFIQFDEENIQEISDTYHTWQS 440

Query: 462 GK--------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            K        + + +       +   ++    + F+     +   + D   + L    + 
Sbjct: 441 DKEAYQDIPEYCKSVTLEEVRAKDYSLVPSKYIEFVNRDENI---DFDEKMKNLQTEFRE 497

Query: 514 FWLDILKPMMQQIYPYG 530
                 +   + +  + 
Sbjct: 498 LLKQEEQSKQELLTVFK 514


>gi|257893689|ref|ZP_05673342.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,408]
 gi|257830068|gb|EEV56675.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,408]
          Length = 512

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/543 (19%), Positives = 214/543 (39%), Gaps = 68/543 (12%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-------------LAFGGSNID 68
              +++   +L     + L   L            E+Y             L+   S  D
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60

Query: 69  L-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKAIFEDFDFS 121
           L  + V + GY+      +++    +       N  N     +AS  +    +F+D D  
Sbjct: 61  LIATIVDILGYAISPVYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDLQ 120

Query: 122 STIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S     ++      I +    + ++        V+ + YE LI +F SE  + A +F TP
Sbjct: 121 SKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLISQFASEAGKKAGEFYTP 180

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +   ++         +      +++DPT G+G  + +  N++         P  +
Sbjct: 181 HMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLTH-------PDNV 227

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSN 298
             HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F   + N
Sbjct: 228 KYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDAVVMN 282

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+   W  D   ++    +    R+G  L   S     FL+H    L+      G  AI
Sbjct: 283 PPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK----ETGTMAI 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L   +   +
Sbjct: 334 VLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR---Q 387

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
              V  I+A+  +   +N    +  ++++  ++IL+ Y  R++  K++ +  +       
Sbjct: 388 TRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKDVEKYAHLATFDEIKEND 443

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH---QSFWLDILKPMMQQIYPYGWAES 534
             +  P  +    ++  +  +      +K+       +   L+ +  +        W +S
Sbjct: 444 YNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLEAISSLQTTPENEAWLQS 503

Query: 535 FVK 537
            ++
Sbjct: 504 ALE 506


>gi|210630770|ref|ZP_03296594.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279]
 gi|210160366|gb|EEA91337.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279]
          Length = 919

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/513 (20%), Positives = 188/513 (36%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L     A    R    E   +  
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVARLKARDFAEEDLPSLV 61

Query: 64  GSNIDLESFVK-VAGYSFYNTSEYSLSTLG-----STNTRNNLESYIASFSDNAKAIFED 117
             + +   FVK   GY     + +S           +N R+ L ++  +     K +F+ 
Sbjct: 62  EDDEETVEFVKGECGYFIAYDNLFSTWVAKGGDFEISNVRDALSAFSRNIDPARKRVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +        V+  IYE+LI  F + 
Sbjct: 122 I-FDTLQTGLSKLGTDARSQSKAARDLIYLIKDIPMDG-RQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                T+YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSMLMSEIVSWHLAG------RENITIYDPTSGSGSLLINIGKAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGD---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLEDDWPWFDTVEN 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + W+ +   ++         RF  G+   S     FL+H 
Sbjct: 291 KDETYDPLFVDAVVSNPPYSQNWDPEDKELD--------PRFKFGVAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IR+ L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----PDGIMCIVLPHGVLFR---GGEEGAIRKNLVENRHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + +L  ++       V +++A+  +        K   +     R+I+D   +    
Sbjct: 396 IPTIVMVLRKQRESS---DVLVVDASKHFVK----EGKNNKLRASDIRRIVDAVTAGATV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVTIDEIRANDYNLNIPRYVDSSEAAES 481


>gi|68536334|ref|YP_251039.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263933|emb|CAI37421.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 819

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/528 (22%), Positives = 214/528 (40%), Gaps = 78/528 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+A++L G    + +   +L    ++ +    +    ++ E  +  GGS 
Sbjct: 6   KKSDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSDKAKSDPYSLIE--VPEGGSF 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            DL +                    G+T+    +   I   ++  + + +  + DF    
Sbjct: 64  DDLVALK------------------GATDIGEKMNIAIRRLAEANDLQGVINNADFDDPN 105

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  +   F  I+        D ++ + YE+L+R F +E  +    F TP
Sbjct: 106 KLGEGKAMQDRLTNLVSIFQDIDFTGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 165

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   +L  P D           T+YDPTCG+G  L    +           P  L
Sbjct: 166 AEVSRIMAQVLEIPKD------TPRSTTVYDPTCGSGSLLIKVAD---------SAPNGL 210

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE +  T A+    M++   E       + +I+QG TLS   F      + F Y +
Sbjct: 211 SIYGQEKDNATWALSRMNMILHGNE-------THDIRQGDTLSDPKFLRGEQLQTFDYFV 263

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF  K         K   + E GRF G   P   +G   FL+H+   L+      GR
Sbjct: 264 ANPPFSVKTW-------KNGFDKEYGRFEGFAEPPEKNGDYAFLLHMVKSLK----SDGR 312

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF    G+ E++IR  L+   LI+AI+ LP +LF+ T I   + ++  ++ 
Sbjct: 313 GAVILPHGVLFR---GNTEAQIREELIRRGLIKAIIGLPANLFYGTGIPACIIVIDKKEA 369

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD----Y 470
             R G + +++A+  +         +  +     R+I+D Y++ E   +++RM+      
Sbjct: 370 ANRTG-IFMVDASKGFEK----DGAKNRLRPRDMRKIIDTYLAGEEVERYARMVPLSEIS 424

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
                  + + R +  S   D   L A L+  I  R L  L + +   
Sbjct: 425 DAKNNYNLNIPRYIDTSEPEDIQDLEAHLKGGIPNRDLDALDEYWEAF 472


>gi|240949222|ref|ZP_04753566.1| type I restriction-modification system [Actinobacillus minor NM305]
 gi|240296338|gb|EER46982.1| type I restriction-modification system [Actinobacillus minor NM305]
          Length = 840

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/533 (20%), Positives = 200/533 (37%), Gaps = 57/533 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  +W +A DL G    +++   IL F   + L    E     + +  ++F   +
Sbjct: 2   NKQQLAATLWASANDLRGKMDASEYKNYILGFLFYKFLSEHQENY---LVQNEVSFEELD 58

Query: 67  ID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAKAI 114
            D +E+  +  GY       Y    +  +  +  L     + +           D+ + +
Sbjct: 59  SDSIETIKEDLGYFIAQEDLYRTWIVNISENKWKLSHVTDAINHFNENLYDSQKDDFEGV 118

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           F D + +S        +K   + K+ +  +GI++  D     V   IYE+LI +F     
Sbjct: 119 FSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKIT-DNSEYDVFGYIYEYLIAQFAMASG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP  V  +   ++ D               +YDPT G+G  L      V    
Sbjct: 178 KKAGEFYTPHQVSRIMAEIVADE------LRQKEQCAVYDPTAGSGSLLLTVSEAV---- 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           + ++    +   GQE    T+ +    +L+R ++       + +  +      ++     
Sbjct: 228 NRNEHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMILRNADTLKSDWPYGEINGEDT 287

Query: 292 ---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                  ++NPP+  KW+ ++   +   K         G    +     FL+H    L+ 
Sbjct: 288 PLFVDCVVANPPYSAKWDTERADKDVRFKE-------YGTAPATKADYAFLLHSLYHLK- 339

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G  AIVL    LF    G+ E +IR  LL+   I+AI+ LP  +F  T I T + 
Sbjct: 340 ---SDGIMAIVLPHGVLFR---GNEEEKIRTKLLQRRQIDAIIGLPAGIFTNTGIPTIVM 393

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           IL  +    +   V  I+A+  +   +N      ++ +   ++ILD+Y  RE    FS +
Sbjct: 394 ILRKQ---PKHNNVLFIDASQGFRKEKNS----NVLRERDIKKILDVYRKREVRAGFSHL 446

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFWLD 517
            D       +  +  P  ++ +         A L   I    +      +   
Sbjct: 447 ADLTEIESNQFNLNIPRYITPVSKNESQNIDAHLNGGIPDEDIDQFSDFWQAF 499


>gi|258654735|ref|YP_003203891.1| type I restriction-modification system, M subunit [Nakamurella
           multipartita DSM 44233]
 gi|258557960|gb|ACV80902.1| type I restriction-modification system, M subunit [Nakamurella
           multipartita DSM 44233]
          Length = 810

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 203/519 (39%), Gaps = 77/519 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L   +WK+ ++L G    + +   IL    ++ +                    +  
Sbjct: 5   KSDLYGSLWKSCDELRGGMDASQYKDYILTLLFVKYVSDK-----------------AKT 47

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSST-- 123
           D  + + V     ++     L+  G     + L   IA  ++    + + +  DF+    
Sbjct: 48  DPNTLIDVPRGGSFDD---MLAAKGDKEIGDRLNKIIAKLAEANGLRNVIDQADFNDEEK 104

Query: 124 -IARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                E    L K+   F+ ++        D ++ + YE+L+R F +E  +    F TP 
Sbjct: 105 LGKGKEMQDRLSKLVTIFNDLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPA 164

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  +   ++               +T+YDPTCG+G  L  A +         + P  + 
Sbjct: 165 EVSRILAKVV------GINSRTRQDKTVYDPTCGSGSLLLKAAS---------EAPRGMT 209

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
            +GQE +  T A+    M++   E         +I +G T++   F      + F + + 
Sbjct: 210 IYGQEKDNATWALSKMNMILHGNE-------IADIAKGDTITNPQFVSGNHLRTFDFVVM 262

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K   +    +        GRF  G P   +G   FL+H    L+      G+AA
Sbjct: 263 NPPFSLKSWSNGLEND-------YGRFEYGRPPEKNGDYAFLLHALKSLKSV----GKAA 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L    LF G A   E+ +R+ LL+   I+ I+ LP +LF+ T I   + IL       
Sbjct: 312 IILPHGVLFRGHA---EATVRQRLLKQGFIKGIIGLPPNLFYGTGIPACIVILDKENAVA 368

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG-- 474
           R G V +I+A+  +    N+ +    +      +I+D +  + E  ++SRM+        
Sbjct: 369 RTG-VFMIDASKGFMKDGNKNR----LRSQDIHKIVDTFNKQLEVERYSRMVPLSEISDP 423

Query: 475 --YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPL 510
                + + R +  S   D   L A L   I  R L  L
Sbjct: 424 KNDFNLNIPRYIDSSEPEDLQDLHAHLHGGIPDRDLDAL 462


>gi|218261758|ref|ZP_03476493.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223772|gb|EEC96422.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii
           DSM 18315]
          Length = 553

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 202/557 (36%), Gaps = 61/557 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKY--------- 59
            L   +W+ A+DL G     DF   +L F  LR +     E  R  +   Y         
Sbjct: 8   ELGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYISDNYIEAARKELGRDYPDKAPEELK 67

Query: 60  ---------LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIA- 105
                    L +G +  D+  F K      +   E    ++     +    ++L   +  
Sbjct: 68  EHGVSTPLQLWYGENPADVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDDLLKTLEK 127

Query: 106 --------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVM 155
                   SF    + +F + + +S             +CK  + I       +    ++
Sbjct: 128 GFKYIENESFDRAFQGLFSEINLNSDKLGKNYDERNALLCKVITKIAEGIAQFSTDTDIL 187

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  F +   + A +F TP+ +  + + ++              +  + D  CG
Sbjct: 188 GDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTHDPKSGPKKKLENVLDFACG 247

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSK 274
           +G  L +  + +   G           +GQE    T+ +    ML+  + +S+       
Sbjct: 248 SGSLLLNVRHRMKANGGSIG-----KIYGQEKNITTYNLARMNMLLHGVKDSEFEIHHGD 302

Query: 275 NIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           ++     +  ++   K+  F   ++NPPF  +WE        E    +      GL   S
Sbjct: 303 SLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPT------EEMGKDFRFKNYGLAPKS 356

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H  + L+      G  AI+L    LF G A   E  IR  LL++  I+A++ 
Sbjct: 357 AADFAFLLHGFHFLKQ----DGTMAIILPHGVLFRGGA---EERIRTKLLKDGNIDAVIG 409

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T I   + +L   K   +   V  INA+D       +GKK+  +      +I
Sbjct: 410 LPANLFFSTGIPVCILVLKKCK---KSDDVLFINASD--KENFEKGKKQNKLQTKDIDKI 464

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           +D Y  R E  ++SR +           +     +S   +   +  L+ +    +L    
Sbjct: 465 IDTYKQRKEEERYSRPVSMDEIERNGYNLNISRYVSIAKEDVKIDLLQVNKKLIELEGKI 524

Query: 512 QSFWLDILKPMMQQIYP 528
                   K + +   P
Sbjct: 525 ADASERHNKFLAELGLP 541


>gi|157157373|ref|YP_001461440.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157079403|gb|ABV19111.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 569

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/517 (18%), Positives = 180/517 (34%), Gaps = 95/517 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L N  WK A+ L  +    ++  V+L    L+ +  A E  +  +            
Sbjct: 9   LNELDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTTLFRDVGNPDN 68

Query: 56  -----------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------- 96
                       E+Y       +++E +       F+        TL +           
Sbjct: 69  IYAMSRDDYGSDEEYAQAIQEELEVEDYY-TEKNIFWVPKAARWDTLKNKAMLPTGTVLW 127

Query: 97  ------RNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKI----CKNFSGIE 144
                 ++     ++   DNA    E  +      + R+ +  L  ++       FS   
Sbjct: 128 VDETTGKDVTLRSVSWLVDNALDEIEKTNPKLKGILNRISQYQLGNEVLTGLINTFSDAN 187

Query: 145 LHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
                      +     ++ ++YE+ + +F     +    + TP+ +V L   +L   + 
Sbjct: 188 FSNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYNG 247

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----PILVPHGQELEPET 251
                       +YDP  G+GGF   +   + +     +         +  +GQE  P T
Sbjct: 248 -----------RVYDPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQESNPTT 296

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +    M IR +      D +   +   TL  D     R  + ++NPPF  K       
Sbjct: 297 WKLAAMNMAIRGI------DFNFGSKNADTLLDDQHPDLRADFVMANPPFNMKEW----- 345

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                K     R+  G P   + +  ++ H+ + L       G  A++L++  +      
Sbjct: 346 --WNAKLENDVRWKYGTPPQGNANFAWMQHMIHHL----APKGSMALLLANGSM--SSNT 397

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-----TEERRGKVQLIN 426
           + E EIRR L++ DL+E +VALP  LF  T I   +W L+  K        R+G+V  I+
Sbjct: 398 NNEGEIRRNLIKADLVECMVALPGQLFTNTQIPACIWFLTKDKSSGNGKAHRKGEVLFID 457

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           A  +      + +  R    +   +I D +   +  K
Sbjct: 458 ARKIGFM---KDRVLRDFTREDIARIADTFHKWQADK 491


>gi|294788779|ref|ZP_06754020.1| type I restriction-modification system, M subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483261|gb|EFG30947.1| type I restriction-modification system, M subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 547

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/558 (17%), Positives = 192/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 12  LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSNPENPLY 71

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------L 100
           L     + D E                A   F+   +     + + +  N          
Sbjct: 72  LDRAFYDTDEEYQEALTIELENRDYYTADNVFWVPQQARWDEIKAVSILNIGAELPWGGK 131

Query: 101 ESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD-- 152
            S +A   D+A    E  +      + R+         L  +   FS       T     
Sbjct: 132 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGEP 191

Query: 153 ------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 192 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 241

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 242 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 297

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 298 D------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 344

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 345 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 398

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 399 VECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTT 453

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I +   + +          F +             VL P R     ++       
Sbjct: 454 DDIAKIANTLHTWQTSDGYEDQATFCKSATLEEIADNDF-VLTPGRYVGTAEQEDDGVPF 512

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 513 AEK-MQNLTALLKEQFAK 529


>gi|238760352|ref|ZP_04621493.1| Restriction-modification system, modification (Methylase) subunit
           [Yersinia aldovae ATCC 35236]
 gi|238701412|gb|EEP93988.1| Restriction-modification system, modification (Methylase) subunit
           [Yersinia aldovae ATCC 35236]
          Length = 776

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/589 (20%), Positives = 226/589 (38%), Gaps = 60/589 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPEDIKALN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             ++D   +V+      +A  + ++T   S S    +N R+ L ++    S   K +FE 
Sbjct: 62  EEDVDTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++ +   D V+  IYE+L+ +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYD-VLGYIYEYLLEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +       
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNII------AHELKHKNTIKIYDPTSGSGSLLINIGEAFEQ 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
              + K    +    QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 234 ---YAKNKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDP 290

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +        +SNPP+ + W+           +    RF  GL   +     FL+H  
Sbjct: 291 LGSYYALHVDAVVSNPPYSQNWDPSFK-----DSDPRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E +IR+ L+E + I+ ++ LP ++FF T I
Sbjct: 344 YHLK----PDGIMAIVLPHGVLFR---GGEEGQIRKQLIEQNHIDTVIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
            T + +L   K + +   V +++A+  +        K   +     ++I D  ++RE   
Sbjct: 397 PTVILVL---KQKRQNTDVLVVDASKHFMK----EGKNNKLQASDIKRITDAVINRESID 449

Query: 463 KFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDIL 519
           KFS+ +  +        + + R +  S       L A +   I   +++ LH  FW    
Sbjct: 450 KFSQRVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIPNSEIAELH-HFWQAFP 508

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
           +       P   A S +  + +   A         +FI  +  AF   D
Sbjct: 509 QLHDSLFTPKSAAYSELAIAKQDVNASISGHPQVLAFIRTYNQAFNGFD 557


>gi|187476895|ref|YP_784919.1| restriction-modification system, modification (methylase) subunit
           [Bordetella avium 197N]
 gi|115421481|emb|CAJ47989.1| restriction-modification system, modification (methylase) subunit
           [Bordetella avium 197N]
          Length = 924

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/536 (20%), Positives = 200/536 (37%), Gaps = 63/536 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L               E + A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDRLVAFASAEDFTDEDFSAVT 61

Query: 64  GSNID-LESFVKVAGYSFYNTSEYSLSTLGST-----NTRNNLESYIASFSDNAKAIFED 117
             + + +E F    GY   +   +S     ++     + R  L ++      N K +FE 
Sbjct: 62  EEDTETVEHFKSNLGYFIAHKHLFSTWLDQTSDFTVGDVREALSAFSRLIHPNHKRLFEG 121

Query: 118 F---------DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
                         T A+  KA  +  + +    I +      D V+  IYE+LI  F +
Sbjct: 122 IFKTLETGLSKLGDTAAKQTKA--IGDLLQLIKDIPMDGKQGYD-VLGFIYEYLIGMFAA 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++                 +YD T G+G  L +    +A
Sbjct: 179 SAGKKAGEFYTPHEVSVLMSEVIAHHLKDRETIQ------IYDSTSGSGSLLLNIGQAIA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               H      +  + QEL+  T+ +    +++R +        + +  +      D   
Sbjct: 233 ---KHMGDKDSIKYYAQELKENTYNLTRMNLVMRGILPGNIVTRNADTLEDDWPYFDEQD 289

Query: 287 ----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               +        +SNPP+ +KW    D + K+  +    RF  GL   S     FL+H 
Sbjct: 290 PVNSYNPLYLDAVVSNPPYSQKW----DPLHKDA-DPRYARF--GLAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G  AIVL    LF    G  E  IR+ L+END +E I+ LP+++FF T 
Sbjct: 343 LYHLK----PNGIMAIVLPHGVLFR---GGEEGVIRKQLIENDHLETIIGLPSNIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + +L  ++       V  ++A+  +        K   +     ++I D+ ++R   
Sbjct: 396 IPTVILVLRQKRESS---DVLFVDASKGFAK----EGKNNKLRACDIKKITDVVIARATV 448

Query: 462 GKFSRMLDYRTFGY----RRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ 512
             FSR++             + + R +  S   +   L   +   I   +L  L  
Sbjct: 449 PGFSRLVPKTELQGEANDYNLNIPRYVDSSEPPESWDLYTSMFGGIPLSELDALSD 504


>gi|237729542|ref|ZP_04560023.1| N4/N6-methyltransferase [Citrobacter sp. 30_2]
 gi|226908148|gb|EEH94066.1| N4/N6-methyltransferase [Citrobacter sp. 30_2]
          Length = 515

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/530 (18%), Positives = 199/530 (37%), Gaps = 63/530 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK A+ L  +    ++  V+L    L+ +  + E     ++     F G++ + +
Sbjct: 13  LEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYELLKASEGEFAGADPEDK 72

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSST 123
                A   F+       + L S           ++    I + +   K +         
Sbjct: 73  DEY-TAYNIFFVPELARWNYLISKARLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQN 131

Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +     A +L ++      I L         V+ +++E+ +  F     +    F TP+ 
Sbjct: 132 L----DATVLGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKS 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   +L                 ++DP CG+GG    +   V    +H      +  
Sbjct: 188 IVSLLVNMLEPYKG-----------RVFDPCCGSGGMFVQSEKFVE---AHQGNIDDISI 233

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + S+  R  S+      +   D     +  + ++NPPF 
Sbjct: 234 YGQESNQTTWRLAKMNLAIRGINSEHVRWNSEG-----SFLNDAHKDLKSDFIIANPPFN 288

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +             R+  G+P   + +  ++ H    L    +  G+A +VL+ 
Sbjct: 289 VSDWSGEQLRGD-------ARWQYGIPPTGNANFAWMQHFLYHL----SPKGQAGVVLAK 337

Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-----E 416
             L +    SGE +IR  L+++ ++I+ IV LP  LF  T I   LW +   +       
Sbjct: 338 GALTSKS--SGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRENSSQYR 395

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG-- 474
           +R  ++  I+A +L   I    ++ ++++DD  + I D Y +  N    +  DY      
Sbjct: 396 DRSKEILFIDARNLGHLI---NRRTKVLSDDDIKTIADTYHNWRN----KGGDYEDVAGF 448

Query: 475 YRRIKVLRPLRMSFILDK---TGLARLEADITWRKLSPLHQSFWLDILKP 521
              + +    ++ ++L      GL   E D  +++     ++ +   LK 
Sbjct: 449 CASVDINEVAKLDYVLTPGRYVGLTDEEDDFDFKERFTALKAEFEAQLKE 498


>gi|160939420|ref|ZP_02086770.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437630|gb|EDP15392.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 522

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 106/531 (19%), Positives = 205/531 (38%), Gaps = 68/531 (12%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58
           M     +    L N +W  A  L G+ +  +F   IL       L    E   + +  + 
Sbjct: 1   MDNSIQAHQKELCNKLWAMANALRGNMEAYEFKNYILGMIFYYYLSDRTEKYMTNLLKDD 60

Query: 59  YLAFGGSNIDLE-------------------SFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            +++  +  D E                    F+            + +  L        
Sbjct: 61  NISYEDAWTDEEYKTAVVEEALRDLGFIIEPQFLFRKMVKMVENRSFDIEFLQKAINSLM 120

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             +      ++   +F D    ST       +++ ++ KI  +   I    +     V+ 
Sbjct: 121 ESTLGNDSQEDFDGLFSDMQLDSTKLGHTVKDRSAVMAKIIASLDEINFSVEDTKIDVLG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F +   + A +F TP     L   L       +   +        DPTCG+
Sbjct: 181 NAYEYLIGQFAATAGKKAGEFYTPSGPAELLCRLACLGLTDVKDAA--------DPTCGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L    ++            +   +GQEL   T+ +    M++R +        + NI
Sbjct: 233 GSLLLRLKSYA----------NVRNYYGQELTSTTYNLARMNMILRGIPY-----RNFNI 277

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G TL  D F   +F   ++NPP+  KW  D   +E + +  E G+  P     S    
Sbjct: 278 YNGDTLEHDYFGDMKFRVQVANPPYSAKWSGDLSFME-DPRFNEYGKLAP----KSKADF 332

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + +    +  GRA ++L    LF G A   E  IR+ L++  ++++A++ LP 
Sbjct: 333 AFVQHMVHHM----DEDGRAVVLLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVIGLPA 385

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T I   + +L  R+  +    +  I+A+  + + +N    + I+ +    +I++ 
Sbjct: 386 NLFFGTGIPVCVLVL-KRERNDNADNILFIDASGDFEAGKN----QNILRECDIDKIVET 440

Query: 456 YVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
           Y  RE+  K++ +   +        + + R +      ++  L ++ A+I 
Sbjct: 441 YERREDVDKYAHVATMQEIAENGFNLNIPRYVDTFEPEEEIDLNQVAAEIR 491


>gi|300214622|gb|ADJ79038.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 529

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 113/536 (21%), Positives = 204/536 (38%), Gaps = 58/536 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------ALEPTRSAVREKYLAF 62
           +L   +   A  L       ++    L     + L          L   ++   E+    
Sbjct: 7   TLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKL 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTR-------NNLESYIASFSDNAK 112
              N D +  ++     F    E      + L S N          +  + I S     +
Sbjct: 67  YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNSIESQGKEFE 126

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            +F+D+D  S             I +  S I +L     P+  + N YE+LI++F SE  
Sbjct: 127 GLFDDYDLYSKRLGNTAQKQSDTISEVLSAIGKLEIVKTPEDTLGNAYEYLIKQFASESG 186

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  L   L L   D           T+YDPT G+G  L +   +V    
Sbjct: 187 KKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKYVEHS- 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                   +   GQE+   T+ +    M++  ++      +++ ++   TL +D    + 
Sbjct: 240 ------ERITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDWPVEEI 288

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   + NPP+  KW  +    + + +    G     LP  S     FL+H    L+  
Sbjct: 289 TNFDAVVMNPPYSHKWSANA-GFKDDPRFSAYG----VLPPKSKADYAFLLHGYYHLK-- 341

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP +LF+ T+I T + +
Sbjct: 342 --HSGVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVV 396

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           L   K +     V  I+A+  +  +    K +  + D+   +IL  Y  R++  K++ + 
Sbjct: 397 LKKDKQDR---DVLFIDASKNFKKV----KTQNELRDEDVEKILTTYKERKDIDKYAHLA 449

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +         +  P  +     +  +   E     R+ +   +    +++  +  
Sbjct: 450 SFDEIKENEFNLNIPRYVDTFEPEPEINLDEVSKELRETNEKIKENETELISMLKD 505


>gi|183981973|ref|YP_001850264.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium marinum M]
 gi|183175299|gb|ACC40409.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium marinum M]
          Length = 484

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 168/460 (36%), Gaps = 75/460 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK AE L G    + +  VIL    L+ +  A +  +              
Sbjct: 5   TMKELKDTLWKGAEKLRGSIPASQYKDVILGLVFLKFVSDARDGRKP------------- 51

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF--EDFDFSSTI 124
                        F    E     L      N     I    D A       +   ++T+
Sbjct: 52  -------------FVVPPEARWEALA----GNAKSPDIGQLIDTAMLSVMTANPSLAATL 94

Query: 125 ARLE---KAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            +L        L ++ +          P      +M  +YE+ +  F         +F T
Sbjct: 95  PQLYHKVDQRRLGELVEVLGAARFSGRPSHRARDLMGEVYEYFLGNFARAEGRRGGEFFT 154

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  VV +   +L           P     +YDP CG+GG        +    +H   P  
Sbjct: 155 PPSVVRVIVEIL----------EPSSG-RIYDPCCGSGGMFVQTERFI---CAHDGDPAQ 200

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE   +T  +    + +  ++     D     + G T + D   G    Y ++NP
Sbjct: 201 ISIYGQESVEQTWRMAKMNLAVHGID-----DAGLGARWGDTFATDQHDGVPMDYVMANP 255

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K            ++ +  R+  G P  ++ +  ++ H+ +KL       G+A +V
Sbjct: 256 PFNIKDWA---------RDEQDPRWRFGTPPAANANFAWIQHILSKL----APTGQAGVV 302

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +++  +      +GE  IR  +++ DL+  +VALPT LF  T I   LW  +  K   R 
Sbjct: 303 MANGSM--SSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIPVCLWFFAKDKKA-RS 359

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           G+V  I+A  L + +    +  R + DD   +I D Y   
Sbjct: 360 GQVLFIDARGLGSMV---DRCERTLTDDDVARIGDTYHGW 396


>gi|22299771|ref|NP_683018.1| type I site-specific deoxyribonuclease modification subunit
           [Thermosynechococcus elongatus BP-1]
 gi|22295955|dbj|BAC09780.1| type I site-specific deoxyribonuclease modification subunit
           [Thermosynechococcus elongatus BP-1]
          Length = 543

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 108/566 (19%), Positives = 196/566 (34%), Gaps = 81/566 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS--------AV 55
                  L   +W  A+ L G     DF   +L F  LR L    E             +
Sbjct: 2   NNQDQIRLGKTLWAIADTLRGAMNADDFRDYMLAFLFLRYLSDNYEEAAKRELGSDWPQL 61

Query: 56  REK------YLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLG-----------STNT 96
           RE        + +  +  D+E F  +     +     EY  S++             T  
Sbjct: 62  REDDRRSPLAVWYEENPDDIEPFENMMRRKVHYVVKPEYLWSSIAEMARTQDAELLHTLQ 121

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RV 154
           +        SFS + + +F + +  S            ++C     I       P    +
Sbjct: 122 KGFKFIENESFSSSFQGLFSEINLDSDKLGKTYKQRNERLCTIIGRIAEGLAEFPQERDL 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F +   + A +F TP+ +  + +A++              +  +YD  C
Sbjct: 182 LGDAYEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLDAQDPANGKREKLGKVYDFAC 241

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +    +   G       +   +GQE    T+ +    ML+  L     +D   
Sbjct: 242 GSGSLLLNVGRRMGRYG-------VGKLYGQEKNITTYNLARMNMLLHGL-----KDTEF 289

Query: 275 NIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            I  G +L  +    +         F   ++NPPF  +WE  ++  E             
Sbjct: 290 EIFHGDSLLNEWLLLREENPAKKIEFDAVVANPPFSLRWEPGEELAEDFRFKD------Y 343

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GL   S     FL+H  + L       G  AI+L    LF    G+ E +IR+ LL +  
Sbjct: 344 GLAPKSAADFAFLLHGFHFLH----KEGTMAIILPHGVLFR---GNVEEKIRKKLLLDGN 396

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ L  +LF+ T I   + +L   K  +    V  INA +L+      GK++  +  
Sbjct: 397 IDTVIGLAPNLFYSTGIPVCILVLKKCKKFD---DVLFINAAELYEK----GKRQNQLLP 449

Query: 447 DQRRQILDIYVSRENGK---------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           +   +I++ Y  R   K          SR +           +       ++        
Sbjct: 450 EHIDKIVETYQFRREVKEELDNGALFVSRRVSMEEIEKNDFNLNI---TRYVSTAKSEPE 506

Query: 498 LEADITWRKLSPLHQSFWLDILKPMM 523
           ++     ++L+ L +       +   
Sbjct: 507 IDLQQVHQELAELTRKIEQARDRHNE 532


>gi|156973426|ref|YP_001444333.1| type I restriction-modification system, methyltransferase subunit
           [Vibrio harveyi ATCC BAA-1116]
 gi|156525020|gb|ABU70106.1| hypothetical protein VIBHAR_01115 [Vibrio harveyi ATCC BAA-1116]
          Length = 862

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 105/510 (20%), Positives = 199/510 (39%), Gaps = 52/510 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +   ++   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALT 61

Query: 64  GSNIDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +   +++     F      ++T   S +    +N R+ L ++    +   K +FE 
Sbjct: 62  EDDTETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------RVMSNIYEHLIRRFGSEVS 171
              +      +      K  K  S +      +P        V+  IYE+LI +F +   
Sbjct: 122 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGYDVLGYIYEYLIEKFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + +         +        +YDPT G+G  L +  + VA   
Sbjct: 182 KKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSVA--- 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            + K    +  + QEL+  T+ +    +++R +  D     + +  +      D    + 
Sbjct: 233 KYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITTRNGDTLEDDWPYFDESNPQE 292

Query: 292 ------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                     +SNPP+ +KW+ +    +         RF  GL   +     FL+H    
Sbjct: 293 SYQPLYVDAVVSNPPYSQKWDPENKEND-----PRYARF--GLAPKTKADFAFLLHDLYH 345

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G   IVL    LF    G  E EIR+ L+EN+ I+AI+ LP ++FF T I T
Sbjct: 346 LKP----DGIMTIVLPHGVLFR---GGEEGEIRKQLIENNHIDAIIGLPANIFFGTGIPT 398

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KF 464
            + +L   K +     V +++A+  +        K   + D   ++I+D  + R++  KF
Sbjct: 399 VILVL---KQKRENNDVLIVDASKHFVK----EGKNNKLQDSDIKRIIDAVIHRQDNAKF 451

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           S+++  +T       +  P  +        
Sbjct: 452 SKVVSKKTIQQNEYNLNIPRYVDSSPAAET 481


>gi|223940844|ref|ZP_03632674.1| type I restriction-modification system, M subunit [bacterium
           Ellin514]
 gi|223890494|gb|EEF57025.1| type I restriction-modification system, M subunit [bacterium
           Ellin514]
          Length = 496

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 108/522 (20%), Positives = 189/522 (36%), Gaps = 61/522 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  +    W   +   G      +   IL    L+ L       +    +++    
Sbjct: 2   KQIDQDQINQVAWNACDTFRGTIDPAQYKDYILVTLFLKYLSDVWLDKKEEYEKEFKGDA 61

Query: 64  GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                    E F+   G  FY                  LE    +     + +F + DF
Sbjct: 62  ERAKRRLARERFILPDGCDFYTLYGKRSEANIGELINVALEQIEDANKTKLEGVFRNIDF 121

Query: 121 SSTIA---RLEKAGLLYKICKNFS--GIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGA 174
           +S        E+   L  + + F+   ++L P  V    ++ N Y++LI  F S+  +  
Sbjct: 122 NSEANLGQTKERNKRLKSLLEKFAVEELDLRPSRVGKQDIIGNTYQYLIGHFASDAGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L   LL          +P     + DPTCG+G  L    + V D     
Sbjct: 182 GEFYTPGEVSELLAKLL----------APKKGSRICDPTCGSGSLLIQVGDEVGD----- 226

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
                   +GQE+   T A+C   ML+   ++         I+ G T++      +    
Sbjct: 227 ---NDFSLYGQEMNGSTWALCRMNMLVHNKDA-------ARIEWGDTINNPKLIERDSLM 276

Query: 291 RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +F   ++NPPF    W  D    +K H      RF  G+P  S G   F+ H+    E  
Sbjct: 277 KFDIVVANPPFSLADWGADSADADKFH------RFHRGVPPKSKGDYAFISHMV---ETA 327

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G G+  ++     LF G A   E  IR+  +E +++EA++ LP  LFF T I   + I
Sbjct: 328 IEGTGKVGVIAPHGVLFRGGA---EERIRKAFIEENVLEAVIGLPEKLFFGTGIPAVILI 384

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
            +  K  +    V  I+A+  +    N    +  ++ D   +I+  Y + +   K++   
Sbjct: 385 FNKGKNTK---DVLFIDASREFVEDTN----QNKLSQDHITKIVATYAAFKTVDKYAYRA 437

Query: 469 DYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                      + + R +          L  ++ DI   ++ 
Sbjct: 438 TPEQIDENDFNLNIPRYVDTFEPEKPVNLKAVQNDIDDLEIE 479


>gi|53803793|ref|YP_114323.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
 gi|53757554|gb|AAU91845.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
          Length = 526

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 197/554 (35%), Gaps = 64/554 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S   +    W   +   G      +   IL    L+ +        +  + +Y 
Sbjct: 1   MTEK-LSQQEVNATAWAACDTFRGVVDPAQYKDYILVMLFLKYISDLWNDHYAEYKAQYG 59

Query: 61  AFGG------------------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
                                    D E+        F              N    +  
Sbjct: 60  DDDERIRRKLERERFILPYVELKEDDQETGKSQVIDRFLGDFNALYERRNEPNIGELVNI 119

Query: 103 YIASFSDNAK----AIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +    D  K     +F + DF+S        ++   L  + ++F+ ++L P  V + V+
Sbjct: 120 VLDHIEDANKAKLEGVFRNIDFNSEANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSEDVI 179

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N Y +LI RFGS+  + A +F TP+ V  L  AL           +P     + DP+CG
Sbjct: 180 GNTYIYLIERFGSDAGKKAGEFYTPKMVSRLLAALA----------NPRPGDRICDPSCG 229

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A   V   GSH+         G+E+   T A+    M I   ++     +   
Sbjct: 230 SGSLLIEAAQWVEAQGSHN-----YALFGEEVNGATWALARMNMFIHSKDA---ARIEWC 281

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
               S    +     +F+  ++NPPF       + A      +    RF  G+P  S G 
Sbjct: 282 DTLNSPALIEGDRLMKFNVVVANPPFSLDKWGAEHA-----DHDRFNRFWRGVPPKSKGD 336

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+ ++    E      GR A+V+    LF G A   E  IRR ++E +L++A+V LP 
Sbjct: 337 WAFITNMI---ERALPREGRVAVVVPHGVLFRGGA---EGRIRRAMIEENLLDAVVGLPG 390

Query: 396 DLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +LF  T+I   + +    +      E    V  ++A+  +   +N    +  +++   ++
Sbjct: 391 NLFPTTSIPVAILLFDRAREKGGPREDVRDVLFVDASREFIPGKN----QNQLSEAHFQK 446

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+    +R N  K++ +            +  P  +    ++  +          +L   
Sbjct: 447 IVSTVAARRNVDKYAYVASLDEIAENDFNLNIPRYVDTFEEEEEIDVAAVQREIEQLERE 506

Query: 511 HQSFWLDILKPMMQ 524
                  + + +  
Sbjct: 507 LADVRARMREHLKA 520


>gi|292491160|ref|YP_003526599.1| type I restriction-modification system, M subunit [Nitrosococcus
           halophilus Nc4]
 gi|291579755|gb|ADE14212.1| type I restriction-modification system, M subunit [Nitrosococcus
           halophilus Nc4]
          Length = 739

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 218/551 (39%), Gaps = 66/551 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W++ ++L G    + +   +L    ++ +       R+A+    +  GGS 
Sbjct: 4   KKSELYSSLWQSCDELRGGMDASQYKDYVLTLLFVKYMSDKYAGNRNALI--VVPEGGSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
            D+                  L   G     + + + I      ++ K + +  DF+   
Sbjct: 62  ADM------------------LKLKGDKEIGDKINTIIGRLAEENDLKGVIDVADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F+ I+L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGRGKEMVDRLSKLLTIFNDIDLRANRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   +L    D    +      T+YDPTCG+G  L    +         + P  L
Sbjct: 164 AEVSRIMAKVLGISRDTRQDQ------TVYDPTCGSGSLLLKVAD---------EAPRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE++  T A+    M++   ++        N            + K F + ++NPP
Sbjct: 209 SIFGQEMDNATSALARMNMILH--DAPTAEIWHANTLASPYWKHKDGSLKTFDFVVANPP 266

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F +K          +  +   GRF  G P   +G   FL+H+   L+      G+ A++L
Sbjct: 267 FSQKNWTSGL----DPAHDPFGRFELGAPPAKNGDYAFLLHIIKSLK----STGQGAVIL 318

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E+ IR+ L+   LI+ I+ LP +LF+ T I   + ++   +   R G
Sbjct: 319 PHGVLFRGGA---EAVIRKNLIRRGLIKGIIGLPPNLFYGTGIPACIIVIDKEQAPTRTG 375

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYR-- 476
            V +++A+  +    N+ +    +      +I+D++  +   + K++R++  +       
Sbjct: 376 -VFMMDASKGYMKDGNKNR----LRSQDLHKIVDVFTRQIDRDPKYARLVSLQEIEANDF 430

Query: 477 RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            + + R +  S   D   L A L   I  R +  L   +       +   ++     E +
Sbjct: 431 NLNIPRYIDSSAPEDLHDLNAHLNGGIPNRDIDALEDYW--QAFPTLRPALFKPSDREGY 488

Query: 536 VKESIKSNEAK 546
               + + E K
Sbjct: 489 RYARVPAQEVK 499


>gi|323344377|ref|ZP_08084602.1| type I restriction-modification system [Prevotella oralis ATCC
           33269]
 gi|323094504|gb|EFZ37080.1| type I restriction-modification system [Prevotella oralis ATCC
           33269]
          Length = 542

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/573 (20%), Positives = 213/573 (37%), Gaps = 82/573 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---------- 50
           MT  T +   L   +W  A  L G     DF   +L F  L+ L                
Sbjct: 1   MT--TENKNELGKTLWDIANSLRGAMMADDFRDYMLSFLFLKYLSDNYVEFAKKELGTDY 58

Query: 51  --TRSAVREK--------YLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN--- 95
              ++ V+E+         + +  +  D++ F        +     +Y    +       
Sbjct: 59  PDIKNIVKEETGIVKSPLQIWYAANPEDIDLFEAQMRKKIHYVIKPKYLWDNIAENARTQ 118

Query: 96  ------TRNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--L 145
                        YI   SF  + K +F + + +S       A     + K  + I+  +
Sbjct: 119 SNELLKILEEGFKYIEEQSFETSFKGLFSEINLNSEKLGKNYAERNALLAKVINKIKEGV 178

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    + + YE+LI +F +   + A +F TP+ +  + + ++              
Sbjct: 179 SKLNTTTDTLGDAYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVTLDCQDPKSGKKKK 238

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           I  + D TCG+G  L +  + +   G       I   +GQE    T+ +    ML+  + 
Sbjct: 239 ISKVLDFTCGSGSLLLNVRHEMGANG-------IGKIYGQEKNITTYNLARMNMLLHEV- 290

Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               +D    I  G TL  D              F   ++NPPF  +WE       KE  
Sbjct: 291 ----KDTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEP------KEET 340

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             +      GL   S     FL+H  + L    +G G  AI+L    LF    G  E  I
Sbjct: 341 AKDFRFSRYGLAPKSAADFAFLLHGFHYL----SGDGTMAIILPHGVLFR---GGKEETI 393

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LL +D I+A++ LP +LF+ T I   + +L   +   R   +  INA+        +
Sbjct: 394 RKKLLSDDNIDAVIGLPANLFYSTGIPVCILVLKKCR---RTDDILFINASS--EEHYEK 448

Query: 438 GKKRRIINDDQRRQILDIYVSR-ENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKT 493
           GK++  +  +   +I++ Y  R E  +++R +   + +  GY  + + R + +S   +K 
Sbjct: 449 GKRQNSLRPEDINKIVETYQFRIEENRYARKVYMREIKDNGY-NLNISRYVNLSKEEEKI 507

Query: 494 GLARLEADI--TWRKLSPLHQSFWLDILKPMMQ 524
            LA +   +  T  K+    Q     + +  + 
Sbjct: 508 DLAEVHRQLVATEEKIEEARQKHNEFLKELGLD 540


>gi|172040945|ref|YP_001800659.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852249|emb|CAQ05225.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 865

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 123/646 (19%), Positives = 243/646 (37%), Gaps = 70/646 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
           +   LA+ IW++A ++    +  ++   IL F   + L   +E        +      + 
Sbjct: 2   NKQELASRIWESANNMRSKIEANEYKDYILGFIFYKFLSDQVEQFMLDNDAEPEDLPDAL 61

Query: 66  ---NIDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
              + D  + V+     F      Y+T     +     + R  L ++  + +   K +F+
Sbjct: 62  VETDTDTVALVRNNLGYFLTYENLYSTWRDKGNDFSIAHVREGLATFKRNIAPERKHVFD 121

Query: 117 DF----DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEV 170
                 D S +      A     I K    I+  P        V+  IYE+LI +F +  
Sbjct: 122 GILNTLDTSLSKLGTTDAARTAAIKKLLDLIDDIPTDGKQGYDVLGYIYEYLIEKFAANA 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  + + ++ D      +        +YDPT G+G  L +    VA  
Sbjct: 182 GKKAGEFYTPHEVSLVMSNIVADHLKGRDEIQ------IYDPTSGSGSLLLNIGQAVAKR 235

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                 P  +    QEL   T+ +    +++R +++D     + +         D     
Sbjct: 236 MGD---PDRIKYFAQELRENTYNLTRMNLVMRGVKADNIVARNGDSLAHDWPMFDESDPV 292

Query: 291 R------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +          +SNPP+ +KWE + +  +         RF   L   +     FL+H   
Sbjct: 293 QTYQPLYVDAVVSNPPYSQKWEPEGNGAD-----PRFARF--ALAPKTKADYAFLLHELF 345

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            ++      G   IVL    LF G +   E++IRR L+E + I+A++ LP+++F+ T IA
Sbjct: 346 HVK----PDGILTIVLPHGVLFRGGS---EADIRRNLIEANHIDAVIGLPSNIFYGTGIA 398

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
           T + +L   K E  R  V  I+A+  +        K   +     ++I+D   +R +   
Sbjct: 399 TIIMVL---KQERDRDDVLFIDASQGFIK----QGKYNHLRARDIQRIVDAVHNRVDVPH 451

Query: 464 FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF-----W 515
           F++++           + + R +  +   +   L A +   I   ++S L   +      
Sbjct: 452 FAKVVTRDEIRANDHNLNIPRYVSATLPPEAVDLYATMHGGIPTSEISTLEHYWTALPGL 511

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF--IVAFINAFGRKDPRADP 573
            + L     + Y      +  +   +   A+ L+ +   +       ++A         P
Sbjct: 512 REALFTEKAEGYAELKTTNLRETINQHPAAQALRNQVDAALSDFPEKLHALLVDGAATVP 571

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKI 619
           +T   G+   D      + VP    +  Y   +V     D++++  
Sbjct: 572 ITTAEGQLKEDLFDR-LDPVPL---VDAYEGYQVL---HDSWVETT 610


>gi|291530635|emb|CBK96220.1| type I restriction system adenine methylase (hsdM) [Eubacterium
           siraeum 70/3]
          Length = 534

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 113/550 (20%), Positives = 201/550 (36%), Gaps = 62/550 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------- 56
             A  L+N +W  A DL G    + F   IL     R L    E     +          
Sbjct: 10  QQAQELSNKLWAIANDLRGTMDASKFKDYILGIIFYRFLSEKTEKYMEEILKNDGITYAD 69

Query: 57  -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASF- 107
                  E   A    ++D   ++    YSF        +   G   + + LE  IAS  
Sbjct: 70  ALASNDEELLAALDKYSLDNLGYIIRPEYSFGYIVNMIANKYDGKVFSVDYLEKAIASIQ 129

Query: 108 --------SDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMS 156
                         IF+  D        E   +   + K+    + IE   D     V+ 
Sbjct: 130 QSTLGQKSEAAFDGIFDAMDLKDKDLGKEVSDRTKQIAKVINRVNDIEFSYDDAQFDVLG 189

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y  LI  F S+  +   +F TP  V  L + L      ++        + + DPTCG+
Sbjct: 190 TAYMILIGLFASDSGKKGGEFFTPSAVSELCSKLATVGLKSV--------KNVCDPTCGS 241

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
              L +    V   G   +   +   +GQEL   T+ +    ML+  +          N+
Sbjct: 242 ASMLLEVRKAVIANGGTDE-HAVGHYYGQELNGTTYNLARMNMLMHDVPYQY-----FNL 295

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              +TL KD F   +F   ++NPP+  KW      ++    +G        L   S    
Sbjct: 296 FNDNTLEKDNFGATKFTVQVANPPYSAKWSASSSFLDDPRFSG-----AGKLAPSSKADF 350

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+   +    +  GR A++L    LF   +   E  IRR+L+++ ++++A++ LP 
Sbjct: 351 AFVEHMVYHM----DDDGRIAVLLPHGVLFRSGS---EDTIRRYLIKDLNVLDAVIGLPA 403

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF  T I     +L   +     G +  I+A+  +T  +N       ++ +   +I++ 
Sbjct: 404 NLFHGTGIPVCCLVLRKYRNGNA-GNICFIDASKYYTPGKN----MNQLSAEDIDRIVNA 458

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           YV R++  KF  + +          +  P  +    ++  +         ++L     S 
Sbjct: 459 YVERKDIDKFCHVAEMSEIEENDFNLNIPRYVDTFEEEPEIDIKAVMAEIKELESQRASL 518

Query: 515 WLDILKPMMQ 524
             +I K + +
Sbjct: 519 DDEINKYLKE 528


>gi|157159201|ref|YP_001463944.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157081231|gb|ABV20939.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 515

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/530 (18%), Positives = 200/530 (37%), Gaps = 63/530 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK A+ L  +    ++  V+L    L+ +  + E     ++     F G++ + +
Sbjct: 13  LEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYELLKAGEGEFAGADPEDK 72

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSST 123
                A   F+       + L S           ++    I + +   K +         
Sbjct: 73  DEY-TAYNIFFVPELARWNYLISKAKLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQN 131

Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +     A +L ++      I L         V+ +++E+ +  F     +    F TP+ 
Sbjct: 132 L----DATVLGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKS 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   +L                 ++DP CG+GG    +   V    +H      +  
Sbjct: 188 IVSLLVNMLEPYKG-----------RVFDPCCGSGGMFVQSEKFVE---AHQGNIDDISI 233

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + S+  R  ++      +   D     +  + ++NPPF 
Sbjct: 234 YGQESNQTTWRLAKMNLAIRGINSEHVRWNNEG-----SFLNDAHKDLKSDFIIANPPFN 288

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +             R+  G+P   + +  ++ H    L    +  G+A +VL+ 
Sbjct: 289 VSDWSGEQLRGD-------ARWQYGIPPAGNANFAWMQHFLYHL----SPKGQAGVVLAK 337

Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-----E 416
             L +    SGE +IR  L+++ ++I+ IV LP  LF  T I   LW +   +       
Sbjct: 338 GALTSKS--SGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRENSSHYR 395

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG-- 474
           +R  ++  I+A +L   I    ++ ++++D+  + I D Y +  N    +  DY      
Sbjct: 396 DRSKEILFIDARNLGHLI---NRRSKVLSDEDIKTIADTYHNWRN----KGGDYEDVAGF 448

Query: 475 YRRIKVLRPLRMSFILDK---TGLARLEADITWRKLSPLHQSFWLDILKP 521
              + +    ++ ++L      GLA  E D  +++     ++ +   L+ 
Sbjct: 449 CASVDINEVAKLDYVLTPGRYVGLADEEDDFDFKERFTALKAEFEAQLEE 498


>gi|89093018|ref|ZP_01165969.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92]
 gi|89082668|gb|EAR61889.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92]
          Length = 931

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 123/595 (20%), Positives = 233/595 (39%), Gaps = 60/595 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    +   A  
Sbjct: 14  NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIEQGMTPDDIKALA 73

Query: 64  GSNIDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +   +++     F      ++T   S +    +N R+ L ++    +   K +FE 
Sbjct: 74  EDDTETVDYIRREKGFFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 133

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------RVMSNIYEHLIRRFGSEVS 171
              +      +      K  K  S +      +P        V+  IYE+LI +F +   
Sbjct: 134 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGYDVLGYIYEYLIEKFAANAG 193

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + +         +        +YDPT G+G  L +  + VA   
Sbjct: 194 KKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSVA--- 244

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            H K    +  + QEL+  T+ +    +++R +  D     + +  +      D    + 
Sbjct: 245 KHAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITTRNGDTLEDDWPYFDETNPQE 304

Query: 292 ------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                     +SNPP+ +KWE +    +         RF  GL   +     FL+H    
Sbjct: 305 TYQPLYVDAVVSNPPYSQKWEPENKEND-----PRYARF--GLAPKTKADFAFLLHDLYH 357

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G   IVL    LF    G  E EIR+ L+EN+ I+AI+ LP ++FF T I T
Sbjct: 358 LKP----DGIMTIVLPHGVLFR---GGEEGEIRKQLIENNHIDAIIGLPANIFFGTGIPT 410

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KF 464
            + +L   K +     V +++A+  +        K   + D   ++I D  ++R++  KF
Sbjct: 411 VILVL---KQKRENNDVLIVDASKHFVK----EGKNNKLQDSDIKRITDAVINRQDNAKF 463

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKP 521
           S++   +T       + + R +  S   +   + A +   I  R+++ L + +  D L  
Sbjct: 464 SKVASKKTIQENEYNLNIPRYVDSSPAAETWDIHATMLGGIPNREIAALKEYW--DALPE 521

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
           ++  ++    +E       KS    T+ +      ++AFI A+ +     D    
Sbjct: 522 LLDALFTAKSSEYSELAVEKSQVQATIALH---PQLLAFIQAYKQAFEGFDEYLK 573


>gi|242280199|ref|YP_002992328.1| site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio salexigens DSM 2638]
 gi|242123093|gb|ACS80789.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio salexigens DSM 2638]
          Length = 548

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 103/494 (20%), Positives = 186/494 (37%), Gaps = 70/494 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--------- 59
             L   +W  A  L        +  V+L    L+ +  + E  +  + + +         
Sbjct: 11  KDLDKRLWDAACKLLPSLDAAVYKHVVLGLVFLKYVGDSFEQRKYELLKNFTNPDHEYFL 70

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSE----------YSLSTLGSTNTRNNLESYIASFSD 109
                   ++E        + +   E            L+        +     + +  D
Sbjct: 71  EDDEDPMEEIEERDYYVEENVFWVPESGRWVNLMDCAKLNPGEPLPWGDKTFKSVGALID 130

Query: 110 NAKAIFEDFD------FSSTIARLEKAG-LLYKICKNFSGIEL-HPDTVPDRVMSNIYEH 161
           +A    E  +       +   ARLE     L ++    + I   H       ++ ++YE+
Sbjct: 131 DAMTAVEKENPVLKNVLNKDYARLEVPDGKLSEVMDLINSIPFEHESLKSKDILGHVYEY 190

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +  F +   +    + TP+ +V+L T +L                 +YDP CG+GGF  
Sbjct: 191 FLGEFAAAEGKKGGQYYTPKSIVNLITEMLRPYKG-----------RIYDPACGSGGFFV 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +   V    +H   P  L  +GQE  P T  +    M IR +E D         +   T
Sbjct: 240 SSEEFVE---THTHRPADLAIYGQESNPTTWRLAAMNMAIRGIEYD------FGKEPADT 290

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            + D     RF Y ++NPPF  K                  R+  GLP  ++ +  ++ H
Sbjct: 291 FTNDQHGTMRFDYIMANPPFNLKGWGADSLANDV-------RWKYGLPPDNNANFAWMQH 343

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + + L    +  G+  ++L++  +    A SGE +IRR ++E+DL+E IVALP  LF  T
Sbjct: 344 MIHHL----SPKGKMGLLLANGSM--SSATSGEGDIRRKIIEDDLVECIVALPGQLFTNT 397

Query: 402 NIATYLWILSNRKT--------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            I   +W L+  K+          R G+V  I+A +    +  +   R    +   ++I 
Sbjct: 398 QIPACIWFLNKDKSNGQNIEDLRNRTGEVLFIDARNCGYML--DRVLRDFHPEKDIQRIA 455

Query: 454 DIYVSRENGKFSRM 467
              +S + G+ S +
Sbjct: 456 HTLLSWQVGEKSAV 469


>gi|150020305|ref|YP_001305659.1| type I restriction-modification system, M subunit [Thermosipho
           melanesiensis BI429]
 gi|149792826|gb|ABR30274.1| type I restriction-modification system, M subunit [Thermosipho
           melanesiensis BI429]
          Length = 799

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 134/641 (20%), Positives = 241/641 (37%), Gaps = 88/641 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L   +W+ A +L G    + +   +L    ++ +                     N 
Sbjct: 5   KTQLYTHLWEAANELRGGMDASQYKNYVLTILFVKYVTDRY----------------KND 48

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR- 126
               FV     SF    E              L                DFD S+ +   
Sbjct: 49  PYADFVVPEDGSFDALVEAKGKPDIGERINKVLARLAEENELKGVIDLVDFDDSTKLGNG 108

Query: 127 LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +K   L K+   F   EL+        D ++ ++YE+ +++F +E  +    F TP +V
Sbjct: 109 KDKVDKLTKLIAIFENPELNFSKNRADGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEV 168

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             +   ++        + +    +T YDPTCG+G  L    +         + P  +  +
Sbjct: 169 SRIMAKII------GIENANSPDQTAYDPTCGSGSLLLKVAD---------EAPVEISLY 213

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSN 298
           GQE++ +   +    M++              I+QG+TLS   F  K      F + ++N
Sbjct: 214 GQEIDIDVANLARMNMILHG-------KPDAVIEQGNTLSDPKFKNKDGSLKTFDFAVAN 266

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF +K   +      + +N    RF  G+P   +G   FL+H    L+    G GR AI
Sbjct: 267 PPFSQKNWMNG----VDPENDSFHRFDDGIPPAKNGDYAFLLHFIKSLK---PGKGRGAI 319

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L    LF G A   E+EIRR L++   I+ I+ LP +LF+ T I   + ++       R
Sbjct: 320 ILPHGVLFRGNA---EAEIRRNLVKKGYIKGIIGLPPNLFYGTGIPAIIMVIDKENAHAR 376

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
           +G + +I+A+  +   R +G K R + +    +I+  +V+ E    +SRM+         
Sbjct: 377 KG-IFMIDASKGF---RKDGPKNR-LRERDIHKIVTTFVNFEEIPGYSRMVSLEEIEKND 431

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
             +  P  +    ++              +  +H      I K  + +I      +   K
Sbjct: 432 YNLNIPRYVDSTEEED-------------IQDIHAHLHGGIPKRDIDKIEELKIFKGLKK 478

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
           E  +  E    ++K     +  FI      D   +    +   W         E + +L+
Sbjct: 479 ELFEEKEDCYYRLKVGIELLQEFIEIHEEIDKFKNNALMIFKNWKE-------EKIMFLK 531

Query: 598 SIQDY-----FVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           SI +      F++E+S  + DA+    F+DE       + Y
Sbjct: 532 SIDNNTRVKPFIKELSESLLDAFKSAAFVDEYAVYQTLMDY 572


>gi|257889088|ref|ZP_05668741.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,141,733]
 gi|257825160|gb|EEV52074.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,141,733]
          Length = 512

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 103/527 (19%), Positives = 212/527 (40%), Gaps = 69/527 (13%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-------------LAFGGSNID 68
              +++   +L     + L   L            E+Y             L+   S  D
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60

Query: 69  L-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKAIFEDFDFS 121
           L  + V + GY+      +++    +       N  N     ++S  +    +F+D D  
Sbjct: 61  LIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQLSSTYNQFNGLFDDVDLQ 120

Query: 122 STIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           S     +   +   + ++ K  + +++        V+ + YE LI +F SE  + A +F 
Sbjct: 121 SKKLGTDEQQRNVTITEVIKKLNDVDVLGH--DGDVIGDAYEFLISQFASEAGKKAGEFY 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +   ++         +      +++DPT G+G  + +  N++           
Sbjct: 179 TPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLTHT-------D 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCL 296
            +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T +   F   +
Sbjct: 226 NVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTDEPYTFDAVV 280

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+   W  D   ++    +    R+G  L   S     FL+H    L+      G  
Sbjct: 281 MNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK----ETGTM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L   +  
Sbjct: 332 AIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR-- 386

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
            +   +  I+A+  +   +N    +  ++++  ++IL+ Y  R++  K++ +  +     
Sbjct: 387 -QTRDILFIDASREFVKGKN----QNKLSEENIQKILETYAERKDVEKYAHLATFDEIKE 441

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
               +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 442 NDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 488


>gi|139438170|ref|ZP_01771723.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC
           25986]
 gi|133776367|gb|EBA40187.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC
           25986]
          Length = 853

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 126/651 (19%), Positives = 222/651 (34%), Gaps = 89/651 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L     A    R    E   +  
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVARLKARDFAEEDLPSLV 61

Query: 64  GSNIDLESFVK-VAGYSFYNTSEYSLSTLG-----STNTRNNLESYIASFSDNAKAIFED 117
             + +   FVK   GY     + +S           +N R+ L ++  +     K +F+ 
Sbjct: 62  EDDEETVEFVKGECGYFIAYENLFSTWVSKGGDFEISNVRDALNAFSRNIDPARKRVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +        V+  IYE+LI  F + 
Sbjct: 122 I-FDTLRTGLSKLGTDARSQSKAARDLIYLIKDIPMDG-RQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                T+YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSMLMSEIVSWHLAG------RENITIYDPTSGSGSLLINIGKAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGD---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLEDDWPWFDTVEN 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + W+ +   ++         RF  G+   S     FL+H 
Sbjct: 291 KDETYDPLFVDAVVSNPPYSQNWDPEDKELD--------PRFKFGVAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IR+ L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----PDGIMCIVLPHGVLFR---GGEEGTIRKNLVENRHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + +L  ++       V +++A+  +        K   +     R+I+D   +    
Sbjct: 396 IPTIVMVLRKQRESS---DVLIVDASKHFVK----EGKNNKLRASDIRRIVDAVTTGATV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT----------GLARLEAD------ITWR 505
            KFSR++           +  P  +                 G+ + E D        W 
Sbjct: 449 DKFSRLVTIDEIRANDYNLNIPRYVDSSEAAESWDVYATMFGGVPKAEVDALDRYWKVWP 508

Query: 506 KLS-PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
            L   L        L  M   +     A + V   +     +              ++  
Sbjct: 509 SLKGQLFGEGGGSCLASMTDDVAATVKANADVVSFLAG--YRDALAHLPAELRKRLVDDS 566

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
            + D  A+   D   E + D        V  ++    Y        + DA+
Sbjct: 567 SQVDAVAEE--DYIAERLRDALSG----VALVDGYDAYQA------LDDAW 605


>gi|19881239|gb|AAM00849.1|AF486550_5 HsdM [Campylobacter jejuni]
          Length = 500

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 192/518 (37%), Gaps = 55/518 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + +WK+A+ L  +     +  ++L    LR +  +       + ++    G    D 
Sbjct: 8   KLEDALWKSADKLRKNIDAAGYKHIVLGLIFLRYISDSFMQKYEELLKEQ-DDGADPEDA 66

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFSSTI 124
           + ++    +     S Y+     + N +     +     I   +D  K +         +
Sbjct: 67  DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL 126

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                +  L ++      I          V+ +++E+ +  F     +    F TP+ VV
Sbjct: 127 ----DSKCLGELIDLIGNIAFD-TGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVV 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L                 ++DP CG+GG    +   V    SH      +  +G
Sbjct: 182 ELLVTMLEPYKG-----------RVFDPCCGSGGMFVQSEEFVK---SHQGRLDDISIYG 227

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    + IR++ES      ++      +   D     +  + ++NPPF   
Sbjct: 228 QESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFNDS 282

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +            GR+  G+P  S+ +  ++ H    L      GG A  VL+   
Sbjct: 283 DWSGELLEND-------GRWKYGVPPASNANYAWIQHFLYHL---SPNGGVAGFVLAKGA 332

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L +      E+ IR+ L+E+DLI+ IV LP  LF  T I   LW +  +K  +   K   
Sbjct: 333 LTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLF 390

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-------KFSRMLDYRTFGYRR 477
           I+A DL T I    ++ + +N D   QI +IY + +NG        F + +         
Sbjct: 391 IDARDLGTRI---NRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELS 447

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             VL P R   + D       + D  + +L    +S  
Sbjct: 448 Y-VLTPGRYVGLADSDD--EFDFDTRFNELLAKLKSQI 482


>gi|269967979|ref|ZP_06182018.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827415|gb|EEZ81710.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 919

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 112/533 (21%), Positives = 213/533 (39%), Gaps = 55/533 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +   ++   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALS 61

Query: 64  GSNIDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +   +++     F      ++T   S +    +N R+ L ++    +   K +FE 
Sbjct: 62  EDDTETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------RVMSNIYEHLIRRFGSEVS 171
              +      +      K  K  S +      +P        V+  IYE+LI +F +   
Sbjct: 122 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGYDVLGYIYEYLIEKFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + +         +        +YDPT G+G  L +  + VA   
Sbjct: 182 KKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSVA--- 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            + K    +  + QEL+  T+ +    +++R +  D     + +  +      D    + 
Sbjct: 233 KYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITTRNGDTLEDDWPYFDESNPQE 292

Query: 292 ------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                     +SNPP+ +KW+ +    +         RF  GL   +     FL+H    
Sbjct: 293 SYQPLYVDAVVSNPPYSQKWDPENKEND-----PRYARF--GLAPKTKADFAFLLHDLYH 345

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G   IVL    LF    G  E EIR+ L+EN+ I+AI+ LP ++FF T+I T
Sbjct: 346 LKP----DGIMTIVLPHGVLFR---GGEEGEIRKQLIENNHIDAIIGLPANIFFGTSIPT 398

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +L   K +     V +I+A+  +        K   + D   ++I D  + R++  KF
Sbjct: 399 VILVL---KQKRENNDVLIIDASKHFVK----EGKNNKLQDSDIKRITDAVIHRQDNDKF 451

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
           S+++  +T       + + R +  S   +   L A +   I  R+++ L + +
Sbjct: 452 SKVVSKKTIQENEYNLNIPRYVDSSPAAETWDLHATMLGGIPNREIAALKEYW 504


>gi|153807714|ref|ZP_01960382.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185]
 gi|160886164|ref|ZP_02067167.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483]
 gi|160889102|ref|ZP_02070105.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492]
 gi|149129323|gb|EDM20537.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185]
 gi|156108049|gb|EDO09794.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483]
 gi|156861569|gb|EDO55000.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492]
          Length = 510

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 188/484 (38%), Gaps = 50/484 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            ++        G  + +  E +       +    +    N  +          + IF   
Sbjct: 76  QVEDLPIRIPDGAHWRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++    +   + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPDNIITS-LIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+      
Sbjct: 195 TNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEW---Q 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +   GQE+   T ++    + +  +E         +I    TL    F      ++F  
Sbjct: 242 SVQVFGQEVNGLTSSIARMNLYLNGVED-------FSIACADTLEHPAFLDGSHLRKFDI 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPP+  K    +        N + GR   G P        F  H+   ++      G
Sbjct: 295 VLANPPYSIKEWNREK-----FMNDKWGRNFLGTPPQGRADYAFFQHIIASMD---RNTG 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+     LF       E E+R+ L+E D+++ ++ L  +LFF  ++   + I  NRK
Sbjct: 347 RCAILFPHGVLFRDE----EYELRKKLVEIDIVDCVIGLGPNLFFNASMEACIIICKNRK 402

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
            +  +GKV  I+A    +    E      + +   ++I+  Y + E+ + F+++ D    
Sbjct: 403 EDSHKGKVIFIDAKGEVSRKNAES----YLENTHIQKIISAYENFEDIEYFAKVADINDI 458

Query: 474 GYRR 477
              +
Sbjct: 459 DNNK 462


>gi|317010094|gb|ADU80674.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori India7]
          Length = 817

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 130/636 (20%), Positives = 243/636 (38%), Gaps = 75/636 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +         +  E         
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKARSNNFSEIE--------- 54

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
                   V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 55  --------VPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDP CG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPACGSGSLLLKASSLAGKKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +       + +    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGFSTLSNPFFTTENGMLKTFDYVVANPP 269

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 270 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGA 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 326 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAHA 382

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + D   ++++D + + +E   +S+M+        
Sbjct: 383 RKG-VFMIDASKDFKKDGNKNR----LRDQDVQKMIDTFNAYKEIPHYSKMVSLEEISAN 437

Query: 477 RIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +  P  ++   +       L          K      + +  + K +   ++     
Sbjct: 438 DYNLNIPRYIAAKQESEKDLFALTNSHKASYLPKNEIKAYAPYFKVFKELKNTLFKKSDK 497

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRADPVTDVNGEW 581
           E +     +    K L +++S  ++F  + ++AF R D         P  +P T +  E 
Sbjct: 498 EGYYALKTECENIKELIIQSSEYQTFHASVLSAFDRLDLFETFNDLEPGFNPKTLI--ES 555

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAY 615
           +    L E+E V  L+    Y  F    +  + D +
Sbjct: 556 VCSKVLYEFEKVEILDKYGVYQLFKDYYNEVLQDDW 591


>gi|283796923|ref|ZP_06346076.1| type I restriction-modification system, M subunit [Clostridium sp.
           M62/1]
 gi|291075333|gb|EFE12697.1| type I restriction-modification system, M subunit [Clostridium sp.
           M62/1]
          Length = 522

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 114/557 (20%), Positives = 211/557 (37%), Gaps = 70/557 (12%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M     +    L N +W  A  L G+ +  +F   IL       L    E   + +    
Sbjct: 1   MDNSIQAHQKELCNKLWAMANALRGNMEAYEFKNYILGMIFYYYLSDRTEKYMANLLKDD 60

Query: 57  -----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-----------LGSTNTRNNL 100
                E +         +E  ++  GY       +                  +     +
Sbjct: 61  GIGYEEAWADEEYKTAVIEEALRDLGYVIEPQYLFRKMVKMVENRSFDIEFLQSAINALM 120

Query: 101 ESYIASFS-DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           ES I + S ++   +F D    S+       +++ ++ KI  +   I    D     V+ 
Sbjct: 121 ESTIGNDSQEDFDGLFSDMQLDSSKLGHTVKDRSAVMAKIIASLDEINFGVDDTKIDVLG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F +   + A +F TP     L   L       +   +        DPTCG+
Sbjct: 181 NAYEYLIGQFAATAGKKAGEFYTPSGPAELLCRLACLGLTDVKDAA--------DPTCGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L    N+            +   +GQEL   T+ +    M++R +        + NI
Sbjct: 233 GSLLLRLKNYA----------NVRNYYGQELTSTTYNLARMNMILRGVPY-----RNFNI 277

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G TL  D F   +F   ++NPP+   W  D   +E E  N E G+  P     S    
Sbjct: 278 YNGDTLEHDYFGDMKFRVQVANPPYSANWSADMHFMEDERFN-EYGKLAP----KSKADF 332

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+   +    +  GRA ++L    LF G A   E  IR+ L++  ++++A++ LP 
Sbjct: 333 AFVQHMVYHM----DEDGRAVVLLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVIGLPA 385

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T I   + +L  R+       +  I+A+  + + +N    + I+ +    +I++ 
Sbjct: 386 NLFFGTGIPVCVLVL-KRERNGNSDNILFIDASSDFEAGKN----QNILRECDIDKIVET 440

Query: 456 YVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           Y  R++  K++ +   +        + + R +       +  L  + A+I  RKL    +
Sbjct: 441 YERRQDVDKYAHVATMQEIEENGFNLNIPRYVDTFEPEPEIDLNEVAAEI--RKLQSEIK 498

Query: 513 SFWLDILKPMMQQIYPY 529
               ++     +    +
Sbjct: 499 DIDAELKPFFDELGLDF 515


>gi|170717884|ref|YP_001784939.1| type I restriction-modification system, M subunit [Haemophilus
           somnus 2336]
 gi|168826013|gb|ACA31384.1| type I restriction-modification system, M subunit [Haemophilus
           somnus 2336]
          Length = 537

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 108/530 (20%), Positives = 201/530 (37%), Gaps = 87/530 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTRSAV 55
           +  ++   +W  A +L G    +++   IL F   R L    E               +V
Sbjct: 3   NVQTITGKLWAMANELRGTMDASEYKNYILAFMFYRYLSKHQELYLVDNHILDIEPSQSV 62

Query: 56  REKYLAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-- 109
            + YL    +  +L+ +++      GY+      +        N       Y A F +  
Sbjct: 63  NDAYLT-QATGEELQDYLQDISASLGYAINPEDTWDSLMRKIYNAEVMPSDYQALFDNFN 121

Query: 110 -----------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
                      + + +F D +  ++    +  E+A  L  I K    IE + D     ++
Sbjct: 122 QNANLNEDAVLDFRGVFNDLNLGASHLGNSTNERAKSLGNIVKLVDEIE-YKDDDGRDIL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             IYE+LI +F +   +   +F TP  V  +   L+      L          +YDPT G
Sbjct: 181 GEIYEYLIGQFAANAGKKGGEFYTPHQVSKILAKLVT-----LDVADNQETFLVYDPTMG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L    N +            +  +GQEL   T+ +    +++  +        +  
Sbjct: 236 SGSLLLTVGNELPQS-------KPIKYYGQELNTTTYNLARMNLMMHGVSY-----KNMT 283

Query: 276 IQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +    TL  D   G           RF   ++NPP+  KW    D  E++ K+     FG
Sbjct: 284 LSNADTLESDWPEGLDAQGIDQPLCRFDAVVANPPYSAKW----DNHERKLKDARFQPFG 339

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL--- 382
             L   S     F++H    L       G  AIVL    LF G A   E +IR+ L+   
Sbjct: 340 -ALAPASKADYAFILHSLYHL----GEHGTMAIVLPHGVLFRGAA---EGKIRKALIGDN 391

Query: 383 ----ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
               + + ++A++ LP +LF+ T+I T + +    +  +    +  I+A+  +   +N+ 
Sbjct: 392 TSNAQGNYLDAVIGLPANLFYGTSIPTTILVFKKNRKNK---DILFIDASQDFDKGKNQN 448

Query: 439 KKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMS 487
           +    + D+  ++I+D Y +R+N  K++ +            +  P  + 
Sbjct: 449 R----LTDEHVQKIIDTYQARQNVDKYAYVASLEEIIENDYNLNIPRYVD 494


>gi|328676367|gb|AEB27237.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida Fx1]
          Length = 443

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 174/488 (35%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + ++ + 
Sbjct: 1   MVKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAELQSEE 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
            A      +      +    F+  ++   S L +           +     I   +++ K
Sbjct: 61  WADPEDKDEY-----LESNIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKMLEPYKG-----------RVFDPCCGSGGMFVQSEKFVE--- 217

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           SH      +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 218 SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P   + +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGELLRND-------ARWQYGTPPAGNANYAWIQHFLYHL----A 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL+   L      SGE +IR+ L+E +L++ IV LP  LF  T I   LW + 
Sbjct: 322 PTGVAGFVLAKGAL--TSNTSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFIK 379

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------F 464
             +  +    +  I+A +         ++ +  +DD   +I   Y + +  K       F
Sbjct: 380 RGRKTK---DILFIDARN---KGHLINRRTKEFSDDDITEIAQTYHNWKVEKDYEDIKGF 433

Query: 465 SRMLDYRT 472
            +   Y  
Sbjct: 434 CKSASYEE 441


>gi|167571302|ref|ZP_02364176.1| N-6 DNA methylase [Burkholderia oklahomensis C6786]
          Length = 528

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 181/482 (37%), Gaps = 60/482 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL------- 60
              L   +W  A+ L       ++  ++L    L+ +  A +  R  +   +        
Sbjct: 2   NQDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRVQLAAAFADGNDDLY 61

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              A   +    E         F+  +     TL +   + ++ + I +  +  +A    
Sbjct: 62  LPDAADHAEALEERDYYTMANVFWVPASARWETLRAQAKQADIGARIDAALEAIEADNPR 121

Query: 118 FD--FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                     R + + G L ++    S +          ++  +YE+ + +F +   +  
Sbjct: 122 LKGILDKRFGRTQLEPGRLGELVDLISTVGFGEGHRAKDLLGEVYEYFLGQFATAEGKKG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  VV +   +L                 +YDP CG+GG    +   +   G   
Sbjct: 182 GQFYTPASVVKVLVEVLAPHQG-----------RVYDPCCGSGGMFVQSEKFIEAHGGKA 230

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE  P T  +    + IR   +D         +   T  +D     R  Y
Sbjct: 231 ---DDISIYGQEANPTTWRLVAMNLAIRGFAAD------LGKEPADTFHRDQHPDLRADY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF       +   E         R+  G P  ++ +  +L H+ + L    +  G
Sbjct: 282 VLANPPFNISDWGGERLTEDR-------RWSYGSPPAANANYAWLQHIVHHL----SPRG 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +A +VL++  +   +    E +IRR +++ D+++ +VALP  LFF T I   LW L+  K
Sbjct: 331 QAGVVLANGSMSTNQNS--EGDIRRAMVDADVVDVMVALPPQLFFNTTIPACLWFLAKDK 388

Query: 415 T----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGK 463
           +           +RR ++  I+A  L    R E +  R+ +D+   +I    +  R +G+
Sbjct: 389 SGGAVPGGKRGRDRRNEMLFIDARKLG---RMETRVVRVFDDEDIARIAATVHRWRADGE 445

Query: 464 FS 465
            S
Sbjct: 446 DS 447


>gi|85711747|ref|ZP_01042803.1| type I restriction-modification system methylation subunit
           [Idiomarina baltica OS145]
 gi|85694362|gb|EAQ32304.1| type I restriction-modification system methylation subunit
           [Idiomarina baltica OS145]
          Length = 571

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 100/584 (17%), Positives = 194/584 (33%), Gaps = 104/584 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M          L + +WK A+ L  +    ++  V+L    L+ +  A E  +  + E +
Sbjct: 1   MDNTEQKFLKQLDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEQLLELF 60

Query: 60  LAFGGSN--------------------IDLESFVKVAGYSFYNTSEYSLST--------- 90
                 N                     +LE        + +   + +  +         
Sbjct: 61  KTDDEDNLYYLPRDDFDSNEEYQEALTEELEVLDYYREANVFWVPKAARWSTLKEKAVLP 120

Query: 91  -----LGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKN 139
                       +     ++   DNA    E  +       +       +   L  +   
Sbjct: 121 IGSVLWKDDAGNDVKLRSVSWLIDNALEEIEKSNSKLKGILNRISQYQLENEKLIGLINA 180

Query: 140 FSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           FS              +     ++ ++YE+ + +F     +    + TP+ +V L   +L
Sbjct: 181 FSDTSFTKPVLGGERLNLQSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML 240

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQE 246
                      P     +YDP  G+GGF   +   + +          +    +  +GQE
Sbjct: 241 ----------QPYSG-RVYDPAMGSGGFFVSSDKFIEEHAKEQHYDASEQRKHISVYGQE 289

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    M IR +      D +   +   +   D     R  + ++NPPF  K  
Sbjct: 290 SNPTTWRLAAMNMAIRGI------DFNFGKKNADSFLNDQHADLRADFVMANPPFNIKDW 343

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            ++   +         R+  G P   + +  ++ H+ + L       G   I+L++  + 
Sbjct: 344 WNESLADDV-------RWKYGTPPKGNANFAWVQHMLHHL----APTGSMGILLANGSM- 391

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR---------KTEE 417
                + E EIR+ L+E DL+E +VALP  LF  T I   +W L+           K  +
Sbjct: 392 -SSNTNNEGEIRKRLIEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGMVRNEKKRD 450

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDY 470
           RRG+   I+A +L      + +  R   +D   ++ D +   + G+       F + ++ 
Sbjct: 451 RRGEFLFIDARELGYM---KDRVLRDFTNDDIAKVADTFHMWQQGESYEDIAGFCKSVNL 507

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                    VL P R     ++            R  + L + F
Sbjct: 508 DEIKKHDF-VLTPGRYVGAKEQEDDGEPFNKKMARLTAQLSEQF 550


>gi|300113975|ref|YP_003760550.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299539912|gb|ADJ28229.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus watsonii C-113]
          Length = 570

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 109/583 (18%), Positives = 196/583 (33%), Gaps = 103/583 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M         +L + +WK A+ L  +    ++  V+L    L+ +  A E  + A+ E++
Sbjct: 1   MNNPEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEALLERF 60

Query: 60  LAFGGS-------NIDLESFVKVA-------------GYSFYNTSEYSLSTLGSTNT--- 96
                        + D +   + A                F+       STL        
Sbjct: 61  KDENDDIYYLPREDFDSDEDYQQALQEELEILDYYREANVFWVPKAARWSTLKEKAVLPV 120

Query: 97  ----------RNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNF 140
                      +     ++   DNA    E  +       +       +   L  +   F
Sbjct: 121 GTVLWQDDTGHDVKLRSVSWLMDNALEAIEKSNAKLKGILNRISQYQLENDKLLGLINTF 180

Query: 141 SGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           S              D     ++ ++YE+ + +F     +    + TP+ +V L  A+L 
Sbjct: 181 SDTSFTKPMFDGEQLDLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVAML- 239

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQEL 247
                     P     +YDP  G+GGF   +   + +    H   P      +  +GQE 
Sbjct: 240 ---------EPYSG-RVYDPAMGSGGFFVSSDKFIEEHAKEHHYDPSEQKKHISVYGQES 289

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            P T  +    M IR +      D +   +   T   D     R  + ++NPPF  K   
Sbjct: 290 NPTTWRLAAMNMAIRGI------DFNFGKKNADTFLDDQHPDLRADFVMANPPFNMKDWW 343

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +   +         R+  G P   + +  ++ H+ + L       G  A++L++  +  
Sbjct: 344 SESLADD-------ARWQYGTPPKGNANFAWMQHMIHHL----APTGSMALLLANGSM-- 390

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS---------NRKTEER 418
               + E  IR+ L+E DL+E + ALP  LF  T I   +W L+         N K  +R
Sbjct: 391 SSHTNNEGGIRQRLVEEDLVECMAALPGQLFTNTQIPACIWFLTRDKANGLVRNEKKRDR 450

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYR 471
           R +   I+A +L        +  R    D   +I D + + + G+       F +     
Sbjct: 451 REEFLFIDARNLGFM---RDRVLRDFTVDDIAKIADTFHAWQRGEHYEDVAGFCKSASLD 507

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   VL P R     ++       A+   R    L + F
Sbjct: 508 EIKKHDF-VLTPGRYVGAREQEDDGEPFAEKMARLTGQLQEQF 549


>gi|217034273|ref|ZP_03439690.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10]
 gi|216943245|gb|EEC22710.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10]
          Length = 543

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 118/566 (20%), Positives = 221/566 (39%), Gaps = 61/566 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 51  NNTYSEIEVPQRCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKKG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDSKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +     ++        A+ E++     L   H++ +L   +      Y   + E   
Sbjct: 441 DYNLNIARYIA--------AKQESEKDLFALINSHKASYLPKNEIKAYAPYFKVFKELKN 492

Query: 537 KESIKSNEAKTLKVKASKSFIVAFIN 562
               KS++     +K     I   I 
Sbjct: 493 TLFKKSDKEGYYALKTECENIKDLIT 518


>gi|1747491|gb|AAC44666.1| ALXA and HSDM [Mannheimia haemolytica]
          Length = 616

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 99/494 (20%), Positives = 187/494 (37%), Gaps = 80/494 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------EKYLA 61
              L   +W  A+ L  +    ++  ++L F  L+ +  +    ++ ++      E  L 
Sbjct: 81  LNELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 140

Query: 62  FGGSNIDLESFVKV------------AGYSFYNTSEYSLSTLGSTNTRN--------NLE 101
              +  D + F ++            A   F+   +     + S +  N        +  
Sbjct: 141 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 200

Query: 102 SYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHP-------- 147
             ++   D+A    E  +      + R+        +L  +   FS              
Sbjct: 201 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 260

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L           P    
Sbjct: 261 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSG- 309

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF   A   +    +H      +  +GQE    T  + V  M IR +  D
Sbjct: 310 RIYDPAMGSGGFFVQADRFIQ---AHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFD 366

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP 326
                    +   TL   L   K+    ++NPPF +K W  +  A +         R+  
Sbjct: 367 ------FGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESLAND--------PRWAY 412

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++  +  +      SGE +IR+ +++ DL
Sbjct: 413 GTPPQGNANFAWLQHMIYHL----SPKGKMALLPRNGSM--SSQTSGEGDIRKNIVQADL 466

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +EA++ALP  LF  T I   +WI++  K   R+G+V  INAT +      + +  R    
Sbjct: 467 VEAMIALPNQLFTNTQIPACIWIINKAKA--RKGEVLFINATQIGYL---KDRVLRDFTA 521

Query: 447 DQRRQILDIYVSRE 460
           D   +I D Y + +
Sbjct: 522 DDIAKISDTYHNWQ 535


>gi|254428124|ref|ZP_05041831.1| N-6 DNA Methylase family [Alcanivorax sp. DG881]
 gi|196194293|gb|EDX89252.1| N-6 DNA Methylase family [Alcanivorax sp. DG881]
          Length = 571

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 106/584 (18%), Positives = 194/584 (33%), Gaps = 104/584 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M          L + +WK A  L       ++  ++L    L+ +  A    +  + E +
Sbjct: 1   MNNTEQQFLKELDDKLWKAACKLQASMDAANYKHIVLGLIFLKYVSDAFAERQDELLELF 60

Query: 60  LAFGGSNI---DLESFVKVAGYS------------------FYNTSEYSLSTLGSTNT-- 96
                 NI     E F   A Y                   F+        TL       
Sbjct: 61  QTDDDDNIYYLPREDFDSDAEYQQAIEDELEVLDYYREANVFWMPKAARWQTLKEKAVLP 120

Query: 97  -----------RNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKN 139
                       +     ++   DNA    E  +       +      ++   L  +   
Sbjct: 121 TGTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRIGQYQQENETLIGLINT 180

Query: 140 FSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           FS              +     ++ ++YE+ +  F     +    + TP+ +V L   +L
Sbjct: 181 FSDTSFTKPVFSGEKLNLHSKDILGHVYEYFLGEFALAEGKQGGQYYTPKSIVTLIVEML 240

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQE 246
                      P     +YDP  G+GGF   +   + +  S       +    +  +GQE
Sbjct: 241 ----------QPYSG-RVYDPAMGSGGFFVSSDKFIENHASEQHYDAAEQKKHISVYGQE 289

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    M IR +      D +   +  +T + D     R  + ++NPPF  K  
Sbjct: 290 ANPTTWKLAAMNMAIRGI------DFNFGTKNANTFTNDQHPDLRADFVMANPPFNMKDW 343

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +   +         R+  G P   + +  ++ H+ + L       G  A++L++  + 
Sbjct: 344 WSESLADD-------ARWQYGTPPKGNANFGWMQHMLHHL----APTGSMALLLANGSM- 391

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---------EE 417
                + E EIR+ L+E D +E +VALP  LF  T I   +W L+  KT          +
Sbjct: 392 -SSKTNNEGEIRKRLIEEDRVECMVALPGQLFTNTQIPACIWFLTKDKTNGMVRNEKKRD 450

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDY 470
           RRG+   I+A +L      + +  R   ++   +I D + + +  +       F +    
Sbjct: 451 RRGEFLFIDARNLGFM---KDRVLRDFTNEDIAKIADTFHAWQQDEGYEDVAGFCKSSTL 507

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                    VL P R     ++       A+   R    L + F
Sbjct: 508 DEIKKYDY-VLTPGRYVGAQEQEDDGEPFAEKMARLTEQLKEQF 550


>gi|167620605|ref|ZP_02389236.1| type I restriction-modification system, M subunit [Burkholderia
           thailandensis Bt4]
          Length = 542

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 107/543 (19%), Positives = 195/543 (35%), Gaps = 67/543 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S   +    W   +   G      +   IL    L+ +        +  + +Y 
Sbjct: 1   MTEK-LSQQEVNATAWAACDTFRGVVDPAQYKDYILVMLFLKYVSDLWNDHYAEYKTQYG 59

Query: 61  AFGGS---NIDLESFVKVAGY---------------SFYNTSEYSLSTLGSTNTRNNLES 102
                    ++ E F+                     F              N    +  
Sbjct: 60  DDDERIRRKLERERFILPYVELKEDDPATGKSRVTDRFLGDFNALYERRNEPNIGELINI 119

Query: 103 YIASFSD----NAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +    D      + +F + DF+S        ++   L  + ++F+ ++L P  V + V+
Sbjct: 120 VLDHIEDVNKAKLEGVFRNIDFNSEANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSEDVI 179

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N Y +LI RFGS+  + A +F TP+ V  L +AL            P     + DP+CG
Sbjct: 180 GNTYIYLIERFGSDAGKKAGEFYTPKMVSRLLSALA----------RPKPGDRICDPSCG 229

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A   V    SH+         G+E+   T A+    M I   ++     +   
Sbjct: 230 SGSLLIEAAQMVEAQDSHN-----YALFGEEVNGATWALARMNMFIHSKDA---ARIEWC 281

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
               S    +     +F+  ++NPPF                N    RF  G+P  S G 
Sbjct: 282 DTLNSPALIEGDRLMKFNVVVANPPFSLDKWGA-----DHADNDRFNRFWRGVPPKSKGD 336

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++++    E      GR A+V+    LF G A   E  IR+ L+E +L++A+V LP 
Sbjct: 337 WAFIVNMI---ERALPQEGRVAVVVPHGVLFRGGA---EGRIRQKLIEENLLDAVVGLPG 390

Query: 396 DLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +LF  T+I   + +    +      E    V  ++A+  +   +N    +  ++D+   +
Sbjct: 391 NLFPTTSIPVAILLFDRSREKGGPSEHVRDVLFVDASREFIPGKN----QNQLSDEHFEK 446

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+     R    K++ +            +  P    ++        ++     R++  L
Sbjct: 447 IVTTVAERRIVDKYAYVASLDEIAENDFNLNIP---RYVDTFEAAEEIDVAAVQREIDQL 503

Query: 511 HQS 513
            Q 
Sbjct: 504 EQE 506


>gi|95928603|ref|ZP_01311350.1| type I restriction-modification system, M subunit [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135393|gb|EAT17045.1| type I restriction-modification system, M subunit [Desulfuromonas
           acetoxidans DSM 684]
          Length = 868

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 112/536 (20%), Positives = 207/536 (38%), Gaps = 55/536 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L   LE     +    E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKLEQFAKSQDFSAEDIRALS 61

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFED 117
             + +   F+K   GY   +   +S            + R+ L ++      + K +FE 
Sbjct: 62  EDDTETVDFIKRNLGYFIAHEHLFSTWIEQGGDFEVAHVRDALSAFSRLIHTDHKDLFEG 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPD-----RVMSNIYEHLIRRFGSEVS 171
              +      +      K  K  S  I+L  D   D      V+  IYE+LI  F +   
Sbjct: 122 IFKTLETGLSKLGDTAAKQTKAISELIQLIKDIPMDGRQGYDVLGFIYEYLISMFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + ++ D      K        +YD T G+G  L +    +A   
Sbjct: 182 KKAGEFYTPHEVSVLMSEIIADHVKGKEKID------IYDSTSGSGSLLLNIGKSIAKHM 235

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------ 285
            +      +    QEL+  T+ +    +++R +        + +  +      D      
Sbjct: 236 GNQGT---IKYFAQELKENTYNLTRMNLVMRGILPTNIVTRNGDTLEDDWPFFDDNDPVN 292

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +        +SNPP+ ++W+ D         +    RF  GL   S     FL+H    
Sbjct: 293 SYEPLYLDAVVSNPPYSQQWDPDHK-----DSDPRYSRF--GLAPKSKADYAFLLHDLYH 345

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  AIVL    LF    G  E EIR+ L+E++ ++ I+ LP ++FF T I T
Sbjct: 346 LK----PDGIMAIVLPHGVLFR---GGEEGEIRKNLIEDNHLDTIIGLPANIFFGTGIPT 398

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + +L   K + ++  V +++A+  +        K   +     ++I D  + R++   +
Sbjct: 399 IILVL---KQKRQKNDVLIVDASKGFAK----EGKNNKLRACDIKKICDTVIKRQSVPCY 451

Query: 465 SRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
           SR++  +        + + R +  S   ++  L A +   I   +L  L+  +   
Sbjct: 452 SRLVSKKEIRENDYNLNIPRYVDSSEPAERWDLYASMFGGIPQSELDVLNDYWQAF 507


>gi|167626409|ref|YP_001676909.1| type I restriction-modification system methyltransferase
           subunit-like protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596410|gb|ABZ86408.1| type I restriction-modification system methyltransferase subunit
           like protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 531

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 113/576 (19%), Positives = 232/576 (40%), Gaps = 69/576 (11%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+     +  S+   +W +A  L G  + +++  ++L    L+ +    E  R  +  +
Sbjct: 1   MTQAKNKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                 + ID+  F       FY   E   S +     ++++        S I   + + 
Sbjct: 61  G---KEAFIDMVEFY-TMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSL 116

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K    D  FS     + K   L     N + I        + ++  +YE+ + +F     
Sbjct: 117 KGALPDNYFSRLGLDVSKLSSLIDTINNINTI----ADKGNDIVGRVYEYFLSKFAIAEG 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G  +F TP+ +V+L   ++                 +YDP CG+GG    ++  +    
Sbjct: 173 KGKGEFYTPKSIVNLIANMIEPYKG-----------KIYDPACGSGGMFVQSIKFIE--- 218

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +H      +  +GQE    T+ +    + I  + +      +       T  KD     +
Sbjct: 219 AHKGNKKDISIYGQEYTGTTYKLAKMNLAICGISA------NLGDVPADTFFKDQHPDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +
Sbjct: 273 ADFIMANPPFNQKDWRGVNELLDDPRWA-----GYDVPPKSNANYGWILNIVSKL----S 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L     G  E +IR+ L+ENDL+EAI+ LP ++F+ TNI+  +WIL+
Sbjct: 324 QNGVAGFILANGAL---SGGGEEYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWILN 380

Query: 412 ----------NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
                     N K +  R + + I   DL        KK    ++   ++I + Y + + 
Sbjct: 381 ANKKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEKKFIQFDEKNIQEISNTYHTWQS 440

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            G  S++ D  + GY+ I    P     +     +A+  + +  + +  +++   +D  +
Sbjct: 441 IGGHSKI-DSESQGYKDI----PEYCKSVTLDEVIAKDYSLVPSKYIEFVNRDENIDFDE 495

Query: 521 PMMQQIYPY----GWAESFVKESIKSNEAKTLKVKA 552
            M      +       E   KE +K  +    ++K 
Sbjct: 496 KMKNLQTEFRELLKQEEQSKKELLKVFKELGYEIKL 531


>gi|313639655|gb|EFS04450.1| type I restriction-modification system, M subunit [Listeria
           seeligeri FSL S4-171]
          Length = 503

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 111/524 (21%), Positives = 192/524 (36%), Gaps = 75/524 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------------ 54
           ++  +   +W  A +L G    + +   +L     + L         A            
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEIFKANSDCGQVSESEL 62

Query: 55  VREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGST----------NTRNNLESY 103
           V E   A       L+  ++ V GY       Y                  ++ NN E  
Sbjct: 63  VEEYAKARADYGESLDKMIQGVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 IA--SFSDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           IA    SD+ + +F     D + T       E++  +  + + F  + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNM-VALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIA---------AKTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +     ++   L  +GQE    T+ +    +L+  +  +       ++
Sbjct: 233 GSLLLTVKKHLKE-----EVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEK-----MSV 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + G TLS+D             F   + NPP+        +    + +    G     LP
Sbjct: 283 KNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDPRFELAG----VLP 338

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I+ 
Sbjct: 339 PDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYIDT 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF  T I   + IL   +T      V +I+A+  +  +     K+ ++ +   
Sbjct: 392 IIGLPGNLFTNTGIPVCVLILKKNRTIS--DPVLVIDASRNFIKV----GKQNVLQEKDI 445

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            +I+D YV R E   +S +            +  P  +  I ++
Sbjct: 446 ARIVDTYVERAEKTGYSHLASREEIIENEYNMNIPRYVEAIDEE 489


>gi|145638854|ref|ZP_01794462.1| transcription elongation factor NusA [Haemophilus influenzae
           PittII]
 gi|145271826|gb|EDK11735.1| transcription elongation factor NusA [Haemophilus influenzae
           PittII]
          Length = 576

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 93/562 (16%), Positives = 192/562 (34%), Gaps = 90/562 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47
              L   +W +A+ L       ++  ++L    L+ +                       
Sbjct: 41  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQKKIQAELTDPENPLY 100

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--------- 98
            + T     E+Y     + ++   +   A   F+  +      L   +  N         
Sbjct: 101 FDRTFDDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSILNTGAELPWGG 159

Query: 99  ----------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                     +    I   ++  K + +     +      +  ++     +F+    + +
Sbjct: 160 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 219

Query: 149 TV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P  
Sbjct: 220 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYS 269

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++
Sbjct: 270 G-RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGID 325

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D             + ++     K+  + ++NPPF       +   +         R+ 
Sbjct: 326 YD------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWA 372

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  D
Sbjct: 373 YGTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINAD 426

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R   
Sbjct: 427 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFT 481

Query: 446 DDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            D   +I D   + +          F +             VL P R     ++      
Sbjct: 482 ADDIAKIADTLHAWQTSDGYEDQAAFCKSTTLEEIAGNDF-VLTPGRYVGTAEQEDDGVP 540

Query: 499 EADITWRKLSPLHQSFWLDILK 520
            A+   + L+ L +  +    +
Sbjct: 541 FAEK-MQNLTALLKEQFAKSTE 561


>gi|254360726|ref|ZP_04976874.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153091296|gb|EDN73270.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 604

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 100/494 (20%), Positives = 189/494 (38%), Gaps = 80/494 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------EKYLA 61
              L   +W  A+ L  +    ++  ++L F  L+ +  +    ++ ++      E  L 
Sbjct: 69  LNELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 128

Query: 62  FGGSNIDLESFVKV------------AGYSFYNTSEYSLSTLGSTNTRN--------NLE 101
              +  D + F ++            A   F+   +     + S +  N        +  
Sbjct: 129 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 188

Query: 102 SYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHP-------- 147
             ++   D+A    E  +      + R+        +L  +   FS              
Sbjct: 189 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 248

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L           P    
Sbjct: 249 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSG- 297

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF   A   +    +H      +  +GQE    T  + V  M IR +  D
Sbjct: 298 RIYDPAMGSGGFFVQADRFIQ---AHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFD 354

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP 326
                    +   TL   L   K+    ++NPPF +K W  +  A +         R+  
Sbjct: 355 ------FGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESLAND--------PRWAY 400

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      SGE +IR+ +++ DL
Sbjct: 401 GTPPQGNANFAWLQHMIYHL----SPKGKMALLLANGSM--SSQTSGEGDIRKNIVQADL 454

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +EA++ALP  LF  T I   +WI++  K   R+G+V  INAT +      + +  R    
Sbjct: 455 VEAMIALPNQLFTNTQIPACIWIINKAKA--RKGEVLFINATQIGYL---KDRVLRDFTA 509

Query: 447 DQRRQILDIYVSRE 460
           D   +I D Y + +
Sbjct: 510 DDIAKISDTYHNWQ 523


>gi|126090304|ref|YP_001041759.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125999935|gb|ABN64004.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 863

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 118/588 (20%), Positives = 227/588 (38%), Gaps = 58/588 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFLTNQGMTPEDIKALD 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +   +V+      +A  + ++T     S    +N R+ L ++      N K +F+ 
Sbjct: 62  EDDAETREYVQSNLGYFIAYDNLFSTWIDPKSDFDESNVRDALSAFSRLIHTNHKKLFDG 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD------RVMSNIYEHLIRRFGSEVS 171
              +      +      K  K  S +     ++P        V+  IYE+LI +F +   
Sbjct: 122 IFTTLETGLSKLGESPSKRTKAISDLLHLIKSIPMNSNQGYDVLGYIYEYLIEKFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + +         +        +YDPT G+G  L +    +A   
Sbjct: 182 KKAGEFYTPHEVSLLMSHIT------AHELQHKENIEIYDPTSGSGSLLINIGQALAQYA 235

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  + QEL+  T+ +    +++R +++   +  + +  +      D    K 
Sbjct: 236 DKA---DNITYYAQELKANTYNLTRMNLIMRGIKATNIKTRNGDTLEDDWPYFDESDPKE 292

Query: 292 ------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                     +SNPP+ + W+      +         RF  GL   +     FL+H    
Sbjct: 293 TYNALYVDAVVSNPPYSQSWDPTHKESD-----PRYSRF--GLAPKTKADFAFLLHDLYH 345

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G   IVL    LF    G  E +IR  L+EN+ I+ I+ LP ++FF T I T
Sbjct: 346 LK----PDGIMTIVLPHGVLFR---GGEEGKIRTQLIENNHIDTIIGLPANIFFGTGIPT 398

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +L   K + +   V +++A+  +        K   +     ++I D  ++R++  KF
Sbjct: 399 VILVL---KQKRQNTDVLIVDASKHFIK----EGKNNKLQASDIKRITDAVINRQSCPKF 451

Query: 465 SRMLD---YRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILK 520
           S++++    R  GY  + + R +  S       L A +   I   +++ L Q +W  + +
Sbjct: 452 SQLVEKSTIREHGY-NLNIPRYVDSSAAAQSWDLYATMLGGIPDSEIANL-QHYWQALPQ 509

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                  P   + S +  +  +      +     +FI A+  AF   D
Sbjct: 510 LHSALFTPKSTSYSELTIAKDAVNTTITQHAQVVTFITAYNQAFNGFD 557


>gi|187779296|ref|ZP_02995769.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC
           15579]
 gi|187772921|gb|EDU36723.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC
           15579]
          Length = 529

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/519 (19%), Positives = 196/519 (37%), Gaps = 67/519 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR----------- 52
              +  S+ N +W  A +L G    +++   IL F   R L    E              
Sbjct: 1   MNNNIKSITNKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEEYLLKNNVIDVIEG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIAS 106
            ++ E Y +    +   +    ++    Y  +             +      + ++   +
Sbjct: 61  ESINESYNSQVDESELEDYLQDISASLGYAIAPKDTWQSLIDKINDSQVIPSDYQTIFDN 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ NA          + +F D +   +    +  E+A  L  I K    IE   +   D 
Sbjct: 121 FNKNAELNKEAVKDFRGVFNDINLGDSRLGSSTNERAKSLNNIVKLVDSIEYKGNDGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++ +       E    +  +YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTE-----AVEKSDELFNVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +            +   GQEL   T+ +    +++  +  +     +
Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHGISYNNMVLSN 287

Query: 274 KNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +  +          G    + F   ++NPP+  KW+ D+  + K+ +  E G+  P   
Sbjct: 288 ADTLESDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSEYGKLAPA-- 344

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H    L    N  G  AIVL    LF G A   E +IR  L+  + ++ 
Sbjct: 345 --SKADYAFILHSIYHL----NKTGTMAIVLPHGVLFRGAA---EGKIRETLIGKNYLDT 395

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+I T + +L   +  +    +  I+A++ +   +N    +  + D+  
Sbjct: 396 IIGLPANLFYGTSIPTVILVLKKNRENK---DILFIDASNDFEKNKN----QNNLRDEDI 448

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMS 487
            +I+  Y  R++  K++ +            +  P  + 
Sbjct: 449 DKIIKTYKERKDVEKYAHLASIEEIRENDFNLNIPRYVD 487


>gi|331650405|ref|ZP_08351477.1| HsdM site-specific DNA-methyltransferase, type I modification
           [Escherichia coli M605]
 gi|331040799|gb|EGI12957.1| HsdM site-specific DNA-methyltransferase, type I modification
           [Escherichia coli M605]
          Length = 568

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 186/523 (35%), Gaps = 93/523 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M          L +  WK A+ L  +    ++  V+L    L+ +  A +  +  ++   
Sbjct: 1   MDNAEQQFLNDLDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFDARQKELKGLF 60

Query: 57  ------EKYLAFGGSNIDLESFVKVA-------------GYSFYNTSEYSLSTLGSTNT- 96
                 +   A    + D E   + A                F+        TL +    
Sbjct: 61  EDKSNPDNIYALSRDDYDTEEAYQQAIAEELEVQDYYTEKNVFWVPKLARWETLKTNAAL 120

Query: 97  ------------RNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKI----CK 138
                       ++ + + ++   D A    E+ +    + + R+    L   +      
Sbjct: 121 PVGTVLGKDDSGKDIVMTSVSKLIDIALDTIENSNPKLKNILNRIGHYQLGNDLLISLIN 180

Query: 139 NFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            FS              +     ++ ++YE+ + +F     +    + TP+ +V L   +
Sbjct: 181 VFSDTSFSEPKYNGVKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEM 240

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQ 245
           L   +             +YDP  G+GGF   +   +            +    +  +GQ
Sbjct: 241 LQPYNG-----------RVYDPAMGSGGFFVSSDRFIEAHADEKHYNAAEQKRNISVYGQ 289

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    M+IR +      D +   Q   T   D     R  + ++NPPF  K 
Sbjct: 290 ESNPTTWRLAAMNMVIRGI------DFNFGKQNADTFLNDQHPDLRADFVMANPPFNMKE 343

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K  +  R+  G P   + +  ++ H+ + L       G  A++L++  +
Sbjct: 344 W-------WNAKLEDDVRWQYGTPPQGNANFAWMQHMIHHL----APKGSMALLLANGSM 392

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-----TEERRG 420
                 + E EIRR ++E DL+E +VALP  LF  T I   +W+L+  K        R+G
Sbjct: 393 --SSNTNSEGEIRRAIIEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGSNGKAHRKG 450

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +V  I+A  +      + +  R  + D  ++I D + S +  K
Sbjct: 451 EVLFIDARQIGFM---KERVLRDFSTDDIKKIADTFHSWQMDK 490


>gi|308178071|ref|YP_003917477.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307745534|emb|CBT76506.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 816

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 216/577 (37%), Gaps = 89/577 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W +A++L G    + +   +L    ++ +    +  +S++           
Sbjct: 4   KKSDLYSSLWSSADELRGSMDASQYKDYVLTLLFVKYVSDKAKEDKSSLI---------- 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-- 124
                +V   G   Y  S      +G     N     +A  +D    +  + DF      
Sbjct: 54  -----YVPDDGSFDYLVSLKGKPDVGEKV--NIAVRRLAEEND-LLGVINNADFDDPTKL 105

Query: 125 -ARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               E    +  +   F  ++        D ++ + YE+L+R F ++  +    F TP +
Sbjct: 106 GDAKELQVKVSNLIGIFQDMDFTGSKAEGDDLLGDAYEYLMRHFATQSGKSKGQFYTPAE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  +   LL  P       S     T+YDPTCG+G  L    +           P  L  
Sbjct: 166 VSRVMAQLLQIP------ASTPKSTTVYDPTCGSGSLLIKVADAA---------PNGLSI 210

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           +GQE +  T A+    M++   E       + +++QG+TL+   F      + F Y ++N
Sbjct: 211 YGQENDNATWALARMNMILHGNE-------THDLRQGNTLADPKFINSGSLQTFDYLVAN 263

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF  K   +         +   GRF G G P   +G   FL+H+   L       G+  
Sbjct: 264 PPFSVKTWTNG-------FDSSYGRFDGFGTPPDKNGDYAFLLHMIKSLRPR----GKGV 312

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G +   E+ IR  L++   I+AI+ LPT+LF+ T I   L ++  +  + 
Sbjct: 313 VVLPHGVLFRGNS---EARIRTELIKRGYIKAIIGLPTNLFYGTGIPACLIVIDKQDAQA 369

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRMLDYRTF--- 473
           R G + +I+A+  +         +  +      +I+D +  S+E  ++SRM+        
Sbjct: 370 RTG-IFMIDASKGFAK----DGPKNRLRPRDMHKIVDAFTGSKEIARYSRMVPISEITDP 424

Query: 474 -GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                + + R +  S   D   L A ++  I    L  L                  +  
Sbjct: 425 KNNYNLNIPRYIDSSAPEDIQDLCAHMQGGIPNSDLEALQ---------------PYWDA 469

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
             S   E          ++K     I + +   G  +
Sbjct: 470 FPSLRSELFAPLRDGYSELKVQTGEIRSIVTGTGEYE 506


>gi|308189189|ref|YP_003933320.1| Type I restriction-modification system methyltransferase subunit
           [Pantoea vagans C9-1]
 gi|308059699|gb|ADO11871.1| Type I restriction-modification system methyltransferase subunit
           [Pantoea vagans C9-1]
          Length = 863

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 213/538 (39%), Gaps = 59/538 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    +   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPKDIKALN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +V+      +A  + ++T     S    +N R+ L ++    S N K +FE 
Sbjct: 62  EEDADTVKYVQDNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPNYKKLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++ +   D V+  IYE+LI +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNSNQGYD-VLGYIYEYLIEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +    V  
Sbjct: 180 AGKKAGEFYTPHEVSVLMSHII------AHELKHKETIKIYDPTSGSGSLLINIGEAVE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + K    +    QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 233 --KYAKSKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDDSDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + W+           +    RF  GL   +     FL+H  
Sbjct: 291 QGSYYTLHVDAVVSNPPYSQNWDPSFK-----DSDPRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E +IR+ L+E + I+ ++ LP ++FF T+I
Sbjct: 344 YHLK----PDGIMAIVLPHGVLFR---GGEEGQIRKQLIEQNHIDTVIGLPANIFFGTSI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
            T + +L   K + +   V +++A+  +        K   +     ++I D  ++RE   
Sbjct: 397 PTVILVL---KQKRQNTDVLVVDASRHFMK----EGKSNKLQASDIKRITDAVINRESID 449

Query: 463 KFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
           KFS+++  +T       + + R +  S       L A +   I   +++ L+  +   
Sbjct: 450 KFSQLVSKQTLRENGYNLNISRYVDSSAAAQSWDLHATMLGGIPNSEIAELNNYWQAF 507


>gi|146329144|ref|YP_001209148.1| type I restriction-modification system, M subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232614|gb|ABQ13592.1| type I restriction-modification system, M subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 826

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 132/728 (18%), Positives = 256/728 (35%), Gaps = 116/728 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +                   G +
Sbjct: 4   KKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISDKY---------------GDS 48

Query: 67  IDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            D        G SF    +    S +G       ++  I + +  A++ F DF+  + + 
Sbjct: 49  DDFPPVTIPPGASFKDMIALKGKSDIGDKINTQIIQPLIDANTRLARSDFPDFNDPNKLG 108

Query: 126 -RLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                   +  +   F   EL+        D ++ + YE+L+R F S+  +    F TP 
Sbjct: 109 EGQAMVDRISNLIGIFQKPELNFSKNRAENDDILGDAYEYLMRHFASQSGKSKGQFYTPS 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  +   ++      +   +     T YDPTCG+G  L                   + 
Sbjct: 169 EVSRIMAKIV-----GISPANTVASTTAYDPTCGSGSLLLKVAAEAGKP---------IT 214

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297
             GQE++  T  +    M++           + NI QG+TL+   F      + + Y ++
Sbjct: 215 LEGQEMDVTTAGLARMNMILHDF-------PTANILQGNTLTSPKFKDGELLRTYDYVVA 267

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K             N    RF  G P    G   +L+H+   ++      G+ A
Sbjct: 268 NPPFSDKTWSTGLT----PANDAYQRFVWGEPPKKQGDYAYLLHIIRSMK----STGKGA 319

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            +L    LF G A   E+ IR  L+++ +++ I+ LP++LF+ T I   + +L      E
Sbjct: 320 CILPHGVLFRGNA---EAVIREKLVQSGILKGIIGLPSNLFYGTGIPACILVLDKETASE 376

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGY- 475
           R+G + +I+A+  +         +  + +    +I+D +    E  ++SRM+        
Sbjct: 377 RKG-IFMIDASKGFIK----DGAKNRLREQDIHKIVDTFTKLTELPRYSRMVPLTEISAP 431

Query: 476 ---RRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ--SFWLDILKPMMQQIYPY 529
                + + R +  +   D   +   L   I  R L  L      +  +   +       
Sbjct: 432 KNDYNLNLPRYIDSTEPEDLQDIDGHLRGGIPERDLDALSDYWKVFPGVRNTLFASAGRT 491

Query: 530 GWAE----------------SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
           G+A+                 F   +    +      + +   +  F      K      
Sbjct: 492 GYAQLTLPIAEVKTAIFAHSEFTAFNQAITQIFAEWKQVNIPQLKGFAKNSNPKQLIKAL 551

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESI-------QDYFV-----------REVSPHVPD-- 613
             D+   + P   +  Y+   +L            Y +           REV   + D  
Sbjct: 552 SEDLLARFKPTPLINAYDVYQHLMDYWGETMQDDCYLIANVGWQAGAQPREVVK-IKDAN 610

Query: 614 ---AYIDKIFIDEKDKEIGR---VGYEINFNRFFY-QYQPSRKLQDIDAELKGVEAQIAT 666
              A+  + F   K K   +   V   I   R+F  ++     L+   A++   E Q+  
Sbjct: 611 GKLAWPKEPFDYTKGKRRFKSELVPTPILIARYFITEHDAIETLETKLADI---EQQLQE 667

Query: 667 LLEEMATE 674
           ++EE + E
Sbjct: 668 MMEENSGE 675


>gi|330506919|ref|YP_004383347.1| N-6 DNA methylase [Methanosaeta concilii GP-6]
 gi|328927727|gb|AEB67529.1| N-6 DNA Methylase [Methanosaeta concilii GP-6]
          Length = 546

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/510 (21%), Positives = 194/510 (38%), Gaps = 56/510 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L  ++W  A  + G      F   ILP    +RL    E   +A   +Y     +   
Sbjct: 32  SMLETWLWDAACAIRGATDAPKFKDFILPLVFFKRLSDVFEDEFAAHVREYGDEELARTI 91

Query: 69  LESFV-------KVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKAI 114
           +E  +             FY   +Y+   + +      L  ++       A  + + + +
Sbjct: 92  VEEDLAHSLKTGSTPIIRFYVPGDYNWRAIRNHGADGRLGEFVTESLREVARLNPDLQGV 151

Query: 115 FE--DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +  D++   +  R      L  + +  S   L  +     ++   YE+L+R+F     +
Sbjct: 152 LDIKDYNERQSGQRTLDDDRLGALIEVLSRHRLGLENAEPDILGRAYEYLLRKFAEGQGQ 211

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP++V  L   L+           P    T+YDP CG+GG L  A         
Sbjct: 212 SAGEFYTPKEVGDLIAELI----------DPVPYSTIYDPACGSGGLLIKARLLYERRHP 261

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
             +        GQEL P T A+    M +                 G T  K  F  +  
Sbjct: 262 DERSRAP-RLWGQELNPVTFAMAKMNMFLHDYTDSSFAI-------GDTFRKPGFGPEGS 313

Query: 291 --RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F Y ++NP + +    D       ++N    RF  G+P  S     ++ H+   L+ 
Sbjct: 314 LMQFDYVVANPMWNQDNYDDA-----FYENDSFNRFNFGIPPRSSADWGWVQHMFASLK- 367

Query: 349 PPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
               GGRAA+VL +  +  G      + E  IR+  +E D IE +V LP +LF+ T    
Sbjct: 368 ---EGGRAAVVLDTGAVSRGSGSRSSNREKAIRQAFVEADAIEGVVLLPENLFYNTTAPG 424

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +L   K EER G++ L+NA++ +       K +  +  +    + ++Y   E   K 
Sbjct: 425 IILLLRKGKPEERAGQILLVNASNYFVK----EKPKNALTPEGIAAVAEVYQKWETREKL 480

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           SR++           +  P +   I ++  
Sbjct: 481 SRVITLDEVREADYNLS-PSQFVEINEREK 509


>gi|145634363|ref|ZP_01790073.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittAA]
 gi|229845102|ref|ZP_04465237.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 6P18H1]
 gi|145268343|gb|EDK08337.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittAA]
 gi|229811938|gb|EEP47632.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 6P18H1]
          Length = 558

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 193/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 23  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 82

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRN---------- 98
           L     + + E                A   F+        TL   +  N          
Sbjct: 83  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPVSARWQTLQEVSILNTGAELPWGGK 142

Query: 99  ---------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    +    I   ++  K + +     +      +  ++     +F+    + + 
Sbjct: 143 LSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEP 202

Query: 150 V---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 203 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 252

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 253 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 308

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 309 D------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 355

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 356 GTPTKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 409

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP+ LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 410 VECMVALPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 464

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +   +I D   + +          F +             VL P R     ++       
Sbjct: 465 NDIAKIADTLHAWQTSDGYEDQAAFCKSATLEDIAGYEF-VLTPGRYVGTAEQEDDGVPF 523

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 524 AEK-MQNLTALLKEQFAK 540


>gi|149185165|ref|ZP_01863482.1| type I restriction-modification system, M subunit [Erythrobacter
           sp. SD-21]
 gi|148831276|gb|EDL49710.1| type I restriction-modification system, M subunit [Erythrobacter
           sp. SD-21]
          Length = 517

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/541 (20%), Positives = 199/541 (36%), Gaps = 59/541 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + +    W   +   G    + +   IL F   + L       R A  ++Y       
Sbjct: 5   KQSDVNKAAWDACDTFRGTIDPSAYKDYILVFLFWKFLSDLWADERKAAEDQYAGDSERV 64

Query: 67  IDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                   F    G SF++      +          LE+   +     + +  + D++S 
Sbjct: 65  ARRLSRFRFQIPEGSSFHDLYPNRNADNIGEQVNVALEAIEQANIAKLEGVLSETDYNSR 124

Query: 124 IARLEKAGLLYKICKNFSG-----IELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEG 173
               E A    +I   F       ++  P         + V+   Y +LI RF S+  + 
Sbjct: 125 TNLGETADRNRRIKDLFDNFARPALDFSPSRFGGEDNAEDVIGETYIYLISRFASDAGKK 184

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GS 232
           A +F TPR V  L   L            P     + DP CG+   L  A  +VA   G 
Sbjct: 185 AGEFFTPRKVSELLVRLA----------DPQPGNKILDPACGSSTLLVRAAEYVAGIEGK 234

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
            H         GQE   +T A+    M +  L+       +  I+ G TL+   F     
Sbjct: 235 EHASQANAQVFGQEATNQTQALARMNMFLHGLD-------NARIEWGDTLTNPKFVNGDA 287

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             RF   ++NPPF  K    + A +         R+  G+P  S G   F+ H+      
Sbjct: 288 LMRFDRIIANPPFSLKKWGHEVAGD-----DRFNRYHRGVPPKSRGDYAFISHMVES--- 339

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A++     LF   A   E +IR+ L+E +L++ +V LP  LF  T I   + 
Sbjct: 340 AKPREGRVAVIAPHGVLFRSGA---EGKIRQALIEENLLDGVVGLPAQLFPSTGIPVCMV 396

Query: 409 ILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
           I    +      E    V  I+A+  +      GKK+  ++ D   +I+D + +RE+  +
Sbjct: 397 IFDRAREKGGAREDADDVLFIDASREFVP----GKKQNELSKDHLNKIVDTWRAREDVER 452

Query: 464 FSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDIL 519
           ++ ++           + + R +      ++  +A ++A+I    ++L+   Q     + 
Sbjct: 453 YASVITREQIAENGYNLNIPRYVDTFEPEEEIDIAAVQAEIEELEKELAETRQKMNGYLK 512

Query: 520 K 520
           +
Sbjct: 513 E 513


>gi|217980318|ref|YP_002364294.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500955|gb|ACK48927.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 567

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/533 (18%), Positives = 189/533 (35%), Gaps = 97/533 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +        L   +W  A+ L        +   +L    ++ +  A       +R+  
Sbjct: 1   MNQTEQQFLKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAF-----KLRQDE 55

Query: 60  LAFGGSNIDLESFVKVAGYS-----------------------FYNTSEYSLSTLGST-- 94
           +    +N + E ++  A YS                       F+  +E     L     
Sbjct: 56  IKADIANPEHEYYLDPADYSEEELAEEIAIELEQRDFYTEKNVFWLPTESRWQFLQDNGP 115

Query: 95  ----------NTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKIC 137
                     N +    + +    DNA    E  +       + + + L+     L ++ 
Sbjct: 116 LVIGGAELDINGKAKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQAKLNELI 175

Query: 138 KNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              + I   H D     ++ ++YE+++ +F     +    F TP  +V L   ++   + 
Sbjct: 176 NLIATIPFVHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMIEPFEG 235

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPET 251
                       +YDP  G+GGF   +   +       ++        +  +GQE    T
Sbjct: 236 -----------RVYDPAMGSGGFFVQSEKFIERHAHEKQVDALTQKHKISIYGQEYNYTT 284

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +    M IR L+ D         +  ST +       R  + ++NPPF  K       
Sbjct: 285 WQLAAMNMAIRGLDYD------FGKEPASTYTNVQHPDLRADFIMANPPFNMKEWNTG-- 336

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                 +    RF  G P   + +  ++ H+ + L       G  A++L++  +      
Sbjct: 337 -----VDDNDPRFKYGQPPSGNANFAWMQHMLHHL----APEGSQALLLANGSM--SSTT 385

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGK 421
           + E  IR+ L+ENDLIE +VALP  LF  T I   +W L+  K             R+G+
Sbjct: 386 NNEGTIRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKNPRVDKAGRKLRGRKGE 445

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           V  I+A +L      + +  R  + +  +++ D++ + + G+    + Y    
Sbjct: 446 VLFIDARNLGYM---KDRVLRDFSFEDIQKVADVFHAWKTGETVNGVTYEDQA 495


>gi|313157419|gb|EFR56841.1| type I restriction-modification system, M subunit [Alistipes sp.
           HGB5]
          Length = 508

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/543 (18%), Positives = 191/543 (35%), Gaps = 62/543 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63
           +   +   +W+  +   G    + +   IL    L+ +    +       ++Y       
Sbjct: 6   TQEEINKVVWQACDTFRGVIDPSQYKDYILTMLFLKYVSDVSKAKYKEYLQRYDGDTERA 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLS-----TLGSTNTRNNLESYIASFSDNAKAIFEDF 118
              +  E F      SF    E+         +          +     S++   IF + 
Sbjct: 66  QRAMRRERFQVPEKSSFDYLFEHRNEPNIGELIDIALADLEFANREKLSSEDGSGIFRNI 125

Query: 119 DFSSTI--ARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEG 173
            F+S+      E+   L ++  +FS   L  D      + V+ + Y  LI +F S+  + 
Sbjct: 126 SFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLANNDVIGDAYMFLIEKFASDAGKK 185

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP++V  L   L                  + DPTCG+G  L  A   V      
Sbjct: 186 AGEFFTPKEVSSLLARLT----------KSAPGSRICDPTCGSGSLLIKAGREVG----- 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +GQEL   T A+ +  ML+   +S   R         +   K+     +F 
Sbjct: 231 ---SDNFSLYGQELNGSTWALAMMNMLLHGFDSATIR---WGDTLRNPKLKEGDALMKFD 284

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF  +     +A +         RF  G+P  S G   F+ H+        N  
Sbjct: 285 TVVANPPFSLEKWGADEAAD-----DPYNRFWRGIPPKSKGDWAFICHMLE----VANEH 335

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +V+    LF G +   E +IR+  +E +L+EAI+ LP +LF+ T I   + I +  
Sbjct: 336 GKVGVVVPHGVLFRGAS---EGKIRQQTVEENLVEAIIGLPANLFYGTGIPAAIAIFNKA 392

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------NGKF 464
           KT      V  I+A+  + + +N+ +    + D+    I+  Y               ++
Sbjct: 393 KTTT---DVLFIDASREFENGKNQNR----LRDEDIDHIVTTYRRFAQGELKPGIVEERY 445

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +            +  P  +    ++  +           L        + +   + +
Sbjct: 446 AYVARREEIADNDYNLNIPRYVDTFEEEPEIDIAAVQQEIDALEKELAEVHVRMDGYLKE 505

Query: 525 QIY 527
             Y
Sbjct: 506 LGY 508


>gi|225351808|ref|ZP_03742831.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157055|gb|EEG70394.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 853

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 195/512 (38%), Gaps = 58/512 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L               +      
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKANDFTEDDLPQLT 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             N D+   V+      +A  + ++T     +    +N R+ L ++  + +   K +F+ 
Sbjct: 62  EDNPDIVEGVQDECGYFIAYDNLFSTWIKKGNDFEISNVRDALSAFSRNINPARKRVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +        V+  IYE+LI  F + 
Sbjct: 122 I-FDTLQTGLSKLGTDARSQSKAARDLIYLIKDIPMDG-RQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLQGREQI------KIYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  ++ + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PDSIMYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLEDDWPWFDTLEN 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + W+     ++         RF  G+   S     FL+H 
Sbjct: 291 KEETYNPLFVDAVVSNPPYSQNWDPTDKEID--------PRFSYGIAPKSRADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E +IR+ L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLRA----DGIMTIVLPHGVLFR---GGEEGQIRKNLIENRHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L  ++ ++R   V +++A+  +        K   +     ++I+D+   +R  
Sbjct: 396 IPTIVMVLRKKRDDDR---VLIVDASKHFIK----DGKNNKLQASDIKRIVDVVSNNRTV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            KFSR++           +  P  +    D  
Sbjct: 449 PKFSRLVSIDEIRANDYNLNIPRYVDSSEDAE 480


>gi|145629353|ref|ZP_01785152.1| transcription elongation factor NusA [Haemophilus influenzae
           22.1-21]
 gi|144978856|gb|EDJ88579.1| transcription elongation factor NusA [Haemophilus influenzae
           22.1-21]
          Length = 586

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/562 (16%), Positives = 192/562 (34%), Gaps = 90/562 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47
              L   +W +A+ L       ++  ++L    L+ +                       
Sbjct: 51  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQKKIQAELTDPENPLY 110

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--------- 98
            + T     E+Y     + ++   +   A   F+  +      L   +  N         
Sbjct: 111 FDRTFDDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSILNTGAELPWGG 169

Query: 99  ----------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                     +    I   ++  K + +     +      +  ++     +F+    + +
Sbjct: 170 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 229

Query: 149 TV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P  
Sbjct: 230 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYS 279

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++
Sbjct: 280 G-RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGID 335

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D             + ++     K+  + ++NPPF       +   +         R+ 
Sbjct: 336 YD------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWA 382

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  D
Sbjct: 383 YGTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINAD 436

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R   
Sbjct: 437 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFT 491

Query: 446 DDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            D   +I D   + +          F +             VL P R     ++      
Sbjct: 492 ADDIAKIADTLHAWQTSDGYEDQAAFCKSTTLEEIAGNDF-VLTPGRYVGTAEQEDDGVP 550

Query: 499 EADITWRKLSPLHQSFWLDILK 520
            A+   + L+ L +  +    +
Sbjct: 551 FAEK-MQNLTALLKEQFAKSTE 571


>gi|331017721|gb|EGH97777.1| N-6 DNA methylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 533

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 114/550 (20%), Positives = 197/550 (35%), Gaps = 69/550 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EK 58
           ++      +W  A  L G     ++   +L    L+ +    +     ++        E 
Sbjct: 2   TSEEFKKTLWDTANKLRGSVSAAEYKYPVLGLVFLKYVSDLYDTQAGVIQDRLADPSSEL 61

Query: 59  YLAFGGSNIDLESFVKVAG------YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           Y+       +  +              F+  +E    TL  +    N     A   D A 
Sbjct: 62  YIEDAELRAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANF----AQLLDKAM 117

Query: 113 AIFEDFDFS------STIARLE-KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIR 164
            + E  + S         +RLE + G L ++ +  + ++  P       V   +YE+ + 
Sbjct: 118 GLIESENLSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLG 177

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F       A +F TP+ +V L   +L                T+YDP CG+GG    + 
Sbjct: 178 QFALNEGARAGEFYTPKSLVSLLVEILAPFKG-----------TIYDPACGSGGMFVQSA 226

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                          L  +GQE   ET  +C+  + +  L+       +     GST + 
Sbjct: 227 KFKDAHAKQLGSKGDLPIYGQEKMAETRRLCLMNLAVHGLDG------NIGQTYGSTFTN 280

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R  Y L+NPPF           E E   G+  R+  G+P   + +  +L H+  
Sbjct: 281 DQHKTLRADYILANPPFNISDW------EGEKLKGD-PRWAHGIPPKGNANYAWLQHILA 333

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           +L    +  GRA +VL++  +   +  SGE +IR+ ++  D++E +VALP  LF  T I 
Sbjct: 334 RL----SSRGRAGVVLANGSMSTQQ--SGEDKIRQSMVIKDVVECMVALPGQLFSNTQIP 387

Query: 405 TYLWILSNRK------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW LS  K        +R  ++  I+A     +     +K+    +D    I   Y  
Sbjct: 388 ACLWFLSKDKRIGPNGKTDRSSQILFIDARK--ATSGRISRKQVEFTEDDMEGIAQTYHR 445

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
             N  FS        GY  I           + K G           +        + D 
Sbjct: 446 WRNTVFS-----DGEGYEDIPGFCYSASFEDVQKHGFILTPGRYVGAESVEEDDQLFSDK 500

Query: 519 LKPMMQQIYP 528
           L  +++Q+  
Sbjct: 501 LNHLIEQLGE 510


>gi|38423944|dbj|BAD02152.1| slr6095 [Synechocystis sp. PCC 6803]
          Length = 477

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/496 (22%), Positives = 194/496 (39%), Gaps = 63/496 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA--GYSFYNTSEYSLSTLG--- 92
              L+R     E     +    LA G S  + +   + A     F+       +T+    
Sbjct: 1   MLFLKRASDVFEQQYQQIIRDNLAKGRSEEEAKQRAERASSYQDFFVPERARWATIRDEL 60

Query: 93  STNTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLE-KAGLLYKICKNFSGIEL-HP 147
             N  N L   +A+  ++      +    DF+  + +       L ++  +F+   L + 
Sbjct: 61  HDNVGNGLNKALAALEESNVALSGVLGHIDFNRKVGKTTLSDTKLRELIFHFNKYRLLNE 120

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D V   ++   YE+LI  F     +   +F TPRDVV L   L+           P    
Sbjct: 121 DFVFPDLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQLMVRLV----------KPAAGM 170

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YDP  G+GG L  A  ++ +CG   +    L   GQ+      A+C   ML+  ++  
Sbjct: 171 SIYDPCVGSGGMLIQAKQYIEECGGDSRN---LSLCGQDNNGGVWAICKINMLLHGIKD- 226

Query: 268 PRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                   I+   TL           +RF   LSNPPF + +EK     +         R
Sbjct: 227 ------ARIENEDTLQNPRHIVDGELERFDRVLSNPPFSQNYEKTNLEFK--------NR 272

Query: 324 FGPGLPKIS--DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F  G    S     ++F  H+ + L++    GG  A V+    LF    G  E +IR+ L
Sbjct: 273 FNHGWCPESGKKADLMFAQHMLSVLKV----GGIVATVMPHGVLFR---GGDEQKIRKSL 325

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGK 439
           +E D IEAI+ LP +LF+ T I   + ++     K  ERRGKV  INA   + + R    
Sbjct: 326 IEKDQIEAIIGLPPNLFYGTGIPACILVMRRAGEKLPERRGKVLFINADAEFYAGRA--- 382

Query: 440 KRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR----RIKVLRPLRMSFILDKTG 494
            +  +  +   +I++ + +  +   ++ ++               + R    +   +   
Sbjct: 383 -QNYLKPEHIEKIVNAFEAFVDIPGYAAVVSREILAAEENDFNCNIRRYADNAPPPEPQD 441

Query: 495 L-ARLEADITWRKLSP 509
           + A L   I + ++  
Sbjct: 442 VTAHLLGGIPFDEIEA 457


>gi|15612488|ref|NP_224141.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4156043|gb|AAD07001.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 815

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/634 (20%), Positives = 245/634 (38%), Gaps = 73/634 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                    + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDK-----------------AK 46

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +++S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 47  NNMDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +       + +    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPLFTTENGMLKTFDYVVANPP 269

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L    N  G+ A
Sbjct: 270 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL----NPTGKGA 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E++IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 326 VILPHGVLFRGNA---EAQIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAHA 382

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFG-- 474
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 383 RKG-VFVIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISLN 437

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              + + R +     L+K   A + +     K        +  + K +   ++     E 
Sbjct: 438 DYNLNIPRYIAAKQELEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKNTLFKKSDKEG 497

Query: 535 FVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
           +     +    K L  +            S    +     F   +P  +P T +  E + 
Sbjct: 498 YYALKTECENIKDLITQSLEYQTFHASVLSAFESLDLFTTFNDLEPGFNPKTLI--ESVC 555

Query: 584 DTNLTEYENVPYLESIQDY--FVREVSPHVPDAY 615
              L E+E V  L+    Y  F    +  + D +
Sbjct: 556 SKVLKEFEKVGILDKYGVYQLFKDYYNEVLQDDW 589


>gi|290473111|ref|YP_003465972.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           bovienii SS-2004]
 gi|289172405|emb|CBJ79172.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           bovienii SS-2004]
          Length = 819

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 132/627 (21%), Positives = 247/627 (39%), Gaps = 86/627 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +    +  R  +           
Sbjct: 4   KKNELYSSLWASCDELRGGMDASQYKDYVLTMLFMKYVSDKYKNDRYGI----------- 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSST- 123
                 V   G  F    +  ++  G  +  + +   I   +D      +F+  +F+   
Sbjct: 53  -----IVIPEGAGF----DDMVALKGKKDIGDEINKIIRKLADENGLGTMFDVANFNDEE 103

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D +M + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++   D            ++YDPTCG+G  L  A +         + P  L
Sbjct: 164 AEVSLVLAKIIGIND------KTPRDASVYDPTCGSGSLLLKASD---------EAPRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE++  T ++    M++   ESD       N         D    K F + ++NPP
Sbjct: 209 SIFGQEMDVTTSSLAKMNMILHGHESDVHSIQQGNTIASPVFKDDKGQLKTFDFAVANPP 268

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K            +  E GRFG G+P   +G   FL+H+   L+      G+ A++L
Sbjct: 269 FSNKNWTSG----INPREDEFGRFGWGIPPEKNGDYAFLLHILKSLK----STGKGAVIL 320

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----E 416
               LF G A   ES IR  L++   I  I+ LP +LF+ T I   + +L  +       
Sbjct: 321 PHGVLFRGNA---ESLIRENLIKQGYIRGIIGLPANLFYGTGIPACIIVLDKQDAISADF 377

Query: 417 ERRGKV------QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
           +  GKV       +I+A+  +    N+ +    +      +I++++  ++   +FSR ++
Sbjct: 378 DAEGKVTRGRDIFMIDASRDFIKDGNKNR----LRSQDIYKIVEVFTQQKTLPRFSRTVE 433

Query: 470 YRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD-ILKPMMQQ 525
           ++        + + R +  S   D   L A L+  I  R +  L + + +   ++  +  
Sbjct: 434 FKEIVANDYNLNIPRYIDSSEPEDLHDLSAHLQGGIPNRDIDVLDKYWNVFPGIRSTLFA 493

Query: 526 IYPYGWAESFVKES------IKSNEAKTLKVKASKSFIV----AFINAFGRKDPRADPVT 575
               G++ S V+ +      +   E KT   ++ K F      A +    R D   + + 
Sbjct: 494 TEREGYSHSLVEANQVKDTILNHTEFKTFAEQSLKPFAAWCQSAALKEIHRSDNPKELLN 553

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDY 602
           D++G  + +     YE+VP L     Y
Sbjct: 554 DISGYLLIN-----YESVPLLSKYDVY 575


>gi|291514833|emb|CBK64043.1| type I restriction system adenine methylase (hsdM) [Alistipes
           shahii WAL 8301]
          Length = 508

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/526 (19%), Positives = 193/526 (36%), Gaps = 64/526 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63
           +   +   +W+  +   G    + +   IL    L+ +    +       ++Y       
Sbjct: 6   TQEEINKVVWQACDTFRGVIDPSQYKDYILTMLFLKYVSDVSKAKYKEYLQRYDGDTERA 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLST-----LGSTNTRNNLESYIASFSDNAKAIFEDF 118
              +  E F      SF    E+   +     +          +     S++   IF + 
Sbjct: 66  QRAMRRERFQVPEKSSFDYLFEHRNESNIGELIDIALADLEFANREKLSSEDGSGIFRNI 125

Query: 119 DFSSTI--ARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEG 173
            F+S+      E+   L ++  +FS   L  D      + V+ + Y  LI +F S+  + 
Sbjct: 126 SFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLENNDVIGDAYMFLIEKFASDAGKK 185

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP++V  L   L                  + DPTCG+G  L  A   V      
Sbjct: 186 AGEFFTPKEVSTLLARLT----------KSAPGSRICDPTCGSGSLLIKAGREVG----- 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +GQEL   T A+ +  ML+   +S   R         +   K+     +F 
Sbjct: 231 ---SDNFSLYGQELNGSTWALAMMNMLLHGFDSATIR---WGDTLRNPKLKEGDALMKFD 284

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF  +     +A +         RF  G+P  S G   F+ H+        N  
Sbjct: 285 TVVANPPFSLEKWGADEAAD-----DPYNRFWRGIPPKSKGDWAFICHMLE----VANEH 335

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +V+    LF G +   E +IR+  +E +L+EAI+ LP +LF+ T I   + I +  
Sbjct: 336 GKVGVVVPHGVLFRGAS---EGKIRQQTVEENLVEAIIGLPANLFYGTGIPAAIAIFNKA 392

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           KT      V  I+A+  + + +N+ +    +  +    I+  Y      + ++ +    +
Sbjct: 393 KTTT---DVLFIDASREFENGKNQNR----LRKEDIDHIVTTYRRFAKSELAQGVVEERY 445

Query: 474 GY-----------RRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            Y             + + R +       +  +A ++ +I   +  
Sbjct: 446 AYVARREELADNDYNLNIPRYVDTFEEEPEIDIAAIQREIDALETE 491


>gi|154487133|ref|ZP_02028540.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis
           L2-32]
 gi|154084996|gb|EDN84041.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis
           L2-32]
          Length = 853

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/645 (18%), Positives = 230/645 (35%), Gaps = 78/645 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L               +  L   
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKDTDFTEDDLLLLT 61

Query: 64  GSNIDLESFVKVA-GYSFYNTSEYSLSTLG-----STNTRNNLESYIASFSDNAKAIFED 117
             N D+   V+   GY     + +S           +N R+ L ++  + +   K +F+ 
Sbjct: 62  EDNPDIVEGVQDECGYFISYDNLFSTWVKKGNDFEISNVRDALSAFSRNINPARKRVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +        V+  IYE+LI  F + 
Sbjct: 122 I-FDTLQTGLSKLGTDARSQSKAARDLIYLIKDIPMD-SRQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLQGREQI------KIYDPTSGSGSLLIHIGQSVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  ++ + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNSIMYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLEDDWPWFDTLEN 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + W+     ++         RF  G+   S     FL+H 
Sbjct: 291 KEETYNPLFVDAVVSNPPYSQNWDPTDKEID--------PRFSYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E +IR+ L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLRA----DGIMTIVLPHGVLFR---GGEEGQIRKNLIENRHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L  ++ ++   KV +++A+  +        K   +     ++I+D+   +R  
Sbjct: 396 IPTIVMVLRKKRDDD---KVLIVDASKHFIK----DGKNNKLQASDIKRIVDVVSNNRTV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADITWRKLSPL--HQSFWL 516
            KFSR++           +  P  +    +       A +   +   ++  L  + + W 
Sbjct: 449 PKFSRLVSIDEIRANDYNLNIPRYVDSSENAETWDVYASMFGGVPKSEVEQLGEYWNAWP 508

Query: 517 DILKPMMQQIYP-YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
            +   + +     Y      V   +++N      V +    I    +    +        
Sbjct: 509 SLKAELFRDNGACYACDHDDVATVVRNNADVQTFVASYAQAISGLPSDLRFRLVEHPEQV 568

Query: 576 DVNGEWIP-----DTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
           D  G+        D  + +   +   +    Y        + DA+
Sbjct: 569 DALGQETAIGEELDAMVADTALI---DPYDAYQK------LDDAW 604


>gi|256826762|ref|YP_003150721.1| type I restriction system adenine methylase HsdM [Cryptobacterium
           curtum DSM 15641]
 gi|256582905|gb|ACU94039.1| type I restriction system adenine methylase HsdM [Cryptobacterium
           curtum DSM 15641]
          Length = 856

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/646 (18%), Positives = 232/646 (35%), Gaps = 73/646 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    + + +   IL F   + L     A    +           
Sbjct: 2   NKQQLASKIWESANKMRSTIEASQYKDYILGFIFYKFLSETEVARLKAKDFAESDLPTLT 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +  +FV+      +A    + T           + R+ L ++  + S   K +FE 
Sbjct: 62  EDDPETVAFVRGECGYFIAYDDLFQTWIAKGKDFEIADVRDALSAFDRNVSPAHKKVFEK 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     + +    I +        V+  IYE+L+ +F + 
Sbjct: 122 I-FETLQTGLSKLGTDARSQSKAARDLIQLIKDIPMDG-RQDYDVLGYIYEYLLEKFATN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++     +  +        +YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSQLISEIVAWHLQSRRQIE------IYDPTSGSGSLLINIGKAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +         D    
Sbjct: 234 RNGN---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIAVRNGDTLADDWPWFDTVEN 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + W    D V+KE       RF  G+   S     FL+H 
Sbjct: 291 KDETYKPLFVDAVVSNPPYSQDW----DPVDKE----IDPRFEYGVAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+E+  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----NDGIMCIVLPHGVLFR---GGEEGLIRRNLVEHRHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L  ++       V +++A+  +        K   +     ++I+D    + + 
Sbjct: 396 IPTIIMVLRKQRAAG-DDNVLVVDASKYFMK----EGKNNKLRASDIKRIVDAVTTNTDV 450

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADITWRKLSPLHQSFWLDI 518
             FSR +           +  P  +       G    A +   +   ++  L + +W   
Sbjct: 451 DSFSRSVTIDEIRKNDYNLNIPRYVDSSEAPEGWDVFATMFGGVPVTEVDALDE-YWTAW 509

Query: 519 LKPMMQQIYPYGWA-ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                Q     G +  +    ++    A    VK+  +     I  F +    +  V   
Sbjct: 510 PSLKAQLFTDNGSSCLTPTASNVAEVIAANTDVKSFITRFNQAIEGFPKAMENSLVVAPE 569

Query: 578 NGEWIPDTNLTEYEN------VPYLESIQDYFVREVSPHVPDAYID 617
           + + + + ++   +       VP ++    Y        + DA+ D
Sbjct: 570 SVDTLAEEDVLASQIGHMLAEVPLVDGYDAYQA------LDDAWRD 609


>gi|223042077|ref|ZP_03612253.1| putative type I restriction-modification system, methyltransferase
           subunit [Actinobacillus minor 202]
 gi|223017152|gb|EEF15588.1| putative type I restriction-modification system, methyltransferase
           subunit [Actinobacillus minor 202]
          Length = 840

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/533 (20%), Positives = 198/533 (37%), Gaps = 57/533 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  +W +A DL G    +++   IL F   + L    E     + +  ++F   +
Sbjct: 2   NKQQLAATLWASANDLRGKMDASEYKNYILGFLFYKFLSEHQENY---LVQNEVSFEELD 58

Query: 67  ID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAKAI 114
            D +E+  +  GY       Y          +  L     + +           D+ + +
Sbjct: 59  SDSIETIKEDLGYFIAQEDLYRTWLTNIGENKWKLSHVTDAINHFNENLYDSQKDDFEGV 118

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           F D + +S        +K   + K+ +  +GI++  D     V   IYE+LI +F     
Sbjct: 119 FSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKIT-DNSEYDVFGYIYEYLIAQFAMASG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP  V  +   ++ D               +YDPT G+G  L      V    
Sbjct: 178 KKAGEFYTPNQVSRIMAEIVADE------LRQKEQCAVYDPTAGSGSLLLTVSEAV---- 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           + ++    +   GQE    T+ +    +L+R ++       + +  +      ++     
Sbjct: 228 NRNEHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMILRNADTLKSDWPYGEINGEDT 287

Query: 292 ---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                  ++NPP+  KW+ ++   +   K         G    +     FL+H    L+ 
Sbjct: 288 PLFVDCVVANPPYSAKWDTERADKDVRFKE-------YGTAPATKADYAFLLHSLYHLK- 339

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G  AIVL    LF    G+ E +IR  LL+   I+AI+ LP  +F  T I T + 
Sbjct: 340 ---SDGIMAIVLPHGMLFR---GNEEEKIRTKLLQRRQIDAIIGLPAGIFTNTGIPTIVM 393

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRM 467
           IL  +    +   V  I+A+  +   +N      ++ +   ++ILD+Y  RE    FS +
Sbjct: 394 ILRKQ---PKHNNVLFIDASQGFRKEKNS----NVLRERDIKKILDVYRKREVQAGFSHL 446

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFWLD 517
            D       +  +  P  ++ +         A L   I    +      +   
Sbjct: 447 ADLAEIESNQFNLNIPRYITPVSKNESQNIDAHLNGGIPDEDIDQFSDFWQAF 499


>gi|253569549|ref|ZP_04846959.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841568|gb|EES69649.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 498

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/526 (20%), Positives = 198/526 (37%), Gaps = 54/526 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T       +L NF+++    L G     +F   I P    +R+    +       E+   
Sbjct: 8   TLKMEGVQNLYNFLFEACNILRGPVSQDNFKDYITPILYFKRISDVYDEETQTALEE--- 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117
             G + +  S  +   +   +   +S     S N    +   +        D    +   
Sbjct: 65  -SGGDEEYASLPEQHRFVIPDGCHWSDIRERSENLGAAIVGAMRGIELANPDTLYGVLSM 123

Query: 118 FDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F       +     G +  + ++ S   L  +  P  +M + YE L+++F  +    A +
Sbjct: 124 FSAQKWTDKKNLSDGKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGE 183

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   +L           P    T+YDP CG+GG L +A+ H+     +H  
Sbjct: 184 FYTPRSVVSLLVRIL----------DPKPGETVYDPACGSGGMLIEAVQHM-----NHSS 228

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RF 292
                  GQE      A+    + +             NI QG TL            +F
Sbjct: 229 LCCGSIFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRSPKILQNGEIAKF 281

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  +          E  + + GR   G P  S G   ++ H+   +    +G
Sbjct: 282 DCVIANPPFSLEKWGSV-----EWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASG 333

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+V+    LF    G+ E  IR  L+++DLIEA+V L   LF+ T ++    IL  
Sbjct: 334 NGRMAVVMPQGVLFR---GNEEGRIREKLVKSDLIEAVVTLGDKLFYGTGLSPCFLILRR 390

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            K      +V +I+     T I    + + I++ +   ++ ++Y++ E+   F++++   
Sbjct: 391 LKPAAHSARVLMID----GTKILTVKRAQNILSPENVDRLYELYINYEDVEDFAKVVTLD 446

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLAR---LEADITWRKLSPLHQSF 514
               +   +     + +  ++         E    + ++    + F
Sbjct: 447 AIAAKDYDLSPNKYVEYHKEEIRPYAEVLAEFKAAYEEVKRCEEEF 492


>gi|254374065|ref|ZP_04989547.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548]
 gi|151571785|gb|EDN37439.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548]
          Length = 538

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 195/479 (40%), Gaps = 63/479 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +   +  S+   +W +A  L G  + +++  ++L    L+ +    E  R  +  +   
Sbjct: 4   AKKKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLITEG-- 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
              + ID+  F       FY   E   + +     ++++        S I   + + K  
Sbjct: 62  -KEAFIDMVEFY-TMENVFYLPEESRWTYIKQNAKQDDIALKIDTALSTIEKNNPSLKGA 119

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     + K   L     N + I        + ++  +YE+ + +F     +G 
Sbjct: 120 LPDNYFSRLGLDVSKLSSLIDTINNINTI----ADKGNDIVGRVYEYFLSKFAIAEGKGK 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ +V+L   ++                 +YDP CG+GG    ++  +    +H 
Sbjct: 176 GEFYTPKSIVNLIANMIEPYKG-----------KIYDPACGSGGMFVQSIKFIE---AHK 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T+ +    + IR + +      +       T  KD     +  +
Sbjct: 222 GNKKDISIYGQEYTGTTYKLAKMNLAIRGISA------NLGDVPADTFFKDQHPDLKADF 275

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +  G
Sbjct: 276 IMANPPFNQKDWRGANELLDDPRWA-----GYDVPPKSNANYGWILNIVSKL----SQNG 326

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L++  L     G  E +IR+ L+ENDL+EAIV LP ++F+ T+I+  +WIL+  K
Sbjct: 327 VAGFILANGAL---SGGGEEYKIRKKLIENDLVEAIVILPRNMFYTTDISVTIWILNANK 383

Query: 415 T-------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                          +R  ++  ++   L        KK    +++  ++I D Y + +
Sbjct: 384 KQREFEQNGKQKSHRDRSNEILFMD---LRQKGVPFEKKFIQFDEENIQEISDTYHAWQ 439


>gi|153805905|ref|ZP_01958573.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185]
 gi|149130582|gb|EDM21788.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185]
          Length = 506

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/525 (20%), Positives = 199/525 (37%), Gaps = 43/525 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           S   L +F+W  A  L G      + + I P    +R+    +      V E  + +  +
Sbjct: 16  SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGYVCEGGIEYANA 75

Query: 66  NIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                      G  + +  E +       +    +    N  E          + IF   
Sbjct: 76  QAQELVIRIPDGAHWRDVRECTENVGQRLVEAFIAIEQANPGEHADGRVIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPD-HIITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++ +   G   +   
Sbjct: 195 TNRTVVDLMAEIL----------QPRPGESIYDPTCGSGGMLVKCLDFLRKKG---EPWQ 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +   GQE+   T A+    + +  +E      + +          D    ++F   L+N
Sbjct: 242 GVKVFGQEINALTSAIARMNLYLNGVED---FSIVREDTLAYPAFVDGSKLRKFDIVLAN 298

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+  K    +  +     N + GR   G P  S     F+ H+ + +    N  GR AI
Sbjct: 299 PPYSIKTWDREAFI-----NDKWGRNFLGTPPQSKADYAFIQHILSSM----NDHGRCAI 349

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L    L        E +IR+ L++NDLI+A++++  +LFF + +   + I  + K  +R
Sbjct: 350 LLPHGVLNRL----IEKDIRQKLIQNDLIDAVISIGKNLFFNSPMEACILICRSNKPTDR 405

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR 477
           + K+ LI ATDL      E      + ++    I  IY    N    S++++       +
Sbjct: 406 KNKILLIKATDLVERKNTES----YLTNEHISIITSIYTRYTNIDGRSKIINNNEIPDNK 461

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
             +     +     K      E    W+  S      + +++  +
Sbjct: 462 YSISPKFYVKSNDPKDIEDISELLENWKSNSESLHESFTNLIDLL 506


>gi|186685409|ref|YP_001868605.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467861|gb|ACC83662.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 684

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 172/713 (24%), Positives = 298/713 (41%), Gaps = 79/713 (11%)

Query: 6   GSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYL 60
            +     + IW  A+ L G   K +++   ++PF  L  +E       +  ++ + E  L
Sbjct: 4   NNILQYESNIWATADLLRGCGIKESEWPSYMMPFFALVMIESRLVRMFDELKAEIGEAAL 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----NLESYIASFSDNAKAIF 115
           A      DL   ++  G  +         TL      +     + E+Y+  F    K + 
Sbjct: 64  AEIAPE-DLTGLIEDKGQGYNVYIFEKNQTLKDICKNDKSFDVDFEAYLRGFDGETKDLL 122

Query: 116 -------EDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
                  E F D    I +L+   +L    K +S I+L P    +  ++ + EH+ RR+ 
Sbjct: 123 GVEATEGEKFLDIKGVITKLKAKKVLLGYTKEWSSIDLKP--FDNSAITTLEEHIKRRWA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++ A +  TP DV+ L   ++    +   K     +  +YD TCG G  L    + +
Sbjct: 181 DISADTAGEQYTPDDVIGLIAEIIASKIEESDK-----LLKIYDCTCGGGNLLFGVEDRI 235

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                H +   +    GQ+     +A+         +ES  R D    I+ G+TL+ D F
Sbjct: 236 -----HQRFKRLTQTFGQDWNDALYALAK-------IESRFRVDSK--IEHGNTLTDDKF 281

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPP+G KW   +  +E    N +  RF   LP ISDG +LF+ HL +KL 
Sbjct: 282 YNDEFDVVIANPPYGVKWNGYQKDIE----NDKTQRFKY-LPSISDGQLLFMQHLISKL- 335

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V + S LF+G AGS ES IR+W+L++D +EA++ LPTD FF T I TYL
Sbjct: 336 ---NANGMGVVVHNGSTLFSGDAGSAESNIRKWMLDSDFVEAVIQLPTDEFFNTGIYTYL 392

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR-QILDIYVSRENGKFSR 466
           W+L+  K  + R KV LINA++ +  ++     +R   D+  R +I++      +  ++R
Sbjct: 393 WVLNKHKLPQCRDKVMLINASEKFKPLKKSKGSKRKEVDEVSRLEIVETLTRFVDNDYAR 452

Query: 467 MLDYRTFGYRRIKVL---------------RPLRMSFILDKTGLARLEADITWRKLSPLH 511
           + D   F + +  ++               +  ++S  L    L   E  +T   ++   
Sbjct: 453 VFDKEFFYFNKQAIMLTNVDEQGKSFASRLKEGKISLKLSPLKLDNGERTLTEFTITNCD 512

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFINAFGRKDP 569
              +  +++   Q I P+  +  + ++ +     K L       ++ I   +        
Sbjct: 513 SQRFGSLVEAFEQDIKPFVSSLDYKEQPLTVTTEKALYRFDADRETLIKEVLGKQEEALG 572

Query: 570 RADPVTDVNGEWIPDTNLTEYEN-VPYLESIQDYFVREVSPHVPD---------AYIDKI 619
               V     +    T   + E  V      Q     E+ P   D         A++ K 
Sbjct: 573 CGKIVVKAAFKKGTKTQPEKIEITVELTPDYQK--DYEIIPFHRDEVANQEAIEAFMAKY 630

Query: 620 FIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
                +     VG EINFN+ FY+ +  R +Q I  E+  +E ++  L E + 
Sbjct: 631 ITKPFEYLENVVGVEINFNKVFYKPEKLRSVQKILGEITAIEKELKGLEEGLG 683


>gi|159038425|ref|YP_001537678.1| N-6 DNA methylase [Salinispora arenicola CNS-205]
 gi|157917260|gb|ABV98687.1| N-6 DNA methylase [Salinispora arenicola CNS-205]
          Length = 810

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 110/539 (20%), Positives = 210/539 (38%), Gaps = 79/539 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L   +W++ ++L G    + +   +L    ++ +       R+++ +  +  GGS  
Sbjct: 5   KSDLYGALWRSCDELRGGMDASQYKDYVLTLLFVKYVTDKATSDRTSLVD--VPAGGSFD 62

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK----AIFEDFDFSST 123
           D+ +                    G     + +   +   ++           DF+    
Sbjct: 63  DMVA------------------CKGDREIGDKINRIVGRLAEANGLGRVVDLADFNDEDR 104

Query: 124 IAR-LEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + +  E    L K+    + ++   +    D ++ + YE+L+R F  E  +    F TP 
Sbjct: 105 LGKGKEMQDRLSKLVTIIADLDFRDNRAEGDDLLGDAYEYLMRHFARESGKSKGQFYTPA 164

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  +   L+                T+YDPTCG+G  L              + P  L 
Sbjct: 165 EVSRVLARLV------GIGPGTRQDHTVYDPTCGSGSLLLKVA---------AEAPRGLT 209

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297
            +GQE +  T A+    M++   E         +I++G T++   FT     + F + ++
Sbjct: 210 IYGQEKDNATWALARMNMILHGYED-------CDIRKGDTIASPQFTQGAQLQTFDFAVA 262

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K   +           E GRF  G P   +G   FL+H+   L+      G+AA
Sbjct: 263 NPPFSVKSWSNGLE-------HEYGRFDVGRPPDKNGDFAFLLHILTSLK----SNGKAA 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +++    LF G A   E+ IR+ LL    I  ++ LP +LF+ T I   + +L     +E
Sbjct: 312 VIMPHGVLFRGNA---EAGIRKELLRRGYIMGVIGLPANLFYGTGIPACMVVLDKEHAQE 368

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG-- 474
           R   + +I+A+  +         +  +      +I+D++  R E  ++SR++        
Sbjct: 369 RTS-IFMIDASQGFIK----DGSKNRLRSQDIHRIVDVFTRRTEVERYSRVVPLYEIADP 423

Query: 475 --YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPL--HQSFWLDILKPMMQQIYP 528
                + + R +  S   D   L A L   I  R L  L    S +  +   + +++ P
Sbjct: 424 KNDYNLNIARYIVSSEPEDTQDLHAHLRGGIPDRDLDALGGFWSAFTSLRTTLFKELRP 482


>gi|194467963|ref|ZP_03073949.1| type I restriction-modification system, M subunit [Lactobacillus
           reuteri 100-23]
 gi|194452816|gb|EDX41714.1| type I restriction-modification system, M subunit [Lactobacillus
           reuteri 100-23]
          Length = 549

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 114/584 (19%), Positives = 223/584 (38%), Gaps = 81/584 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------- 56
             A  + + +W+ A  L  +   +++   IL F   R L    E +    +         
Sbjct: 2   NKAQEITSQLWEMANRLRSNMDASEYRNYILGFMFYRYLSEHQEKSMVENKLIDVAEGQS 61

Query: 57  -----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYI 104
                ++  +    N  LE      GY+      ++        +T+  ++ ++ L+S+ 
Sbjct: 62  VNDAYKEQASGEDLNDYLEEIASSLGYAIAPEYTWATIVDKVNNNTIAPSDYQDMLDSFN 121

Query: 105 ASFSDN------AKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVM 155
            + + N         IF+D +  ++        +A  L  I      IE + D     ++
Sbjct: 122 HNLNLNRNAKMDFHGIFDDMNLGNSRLGNSTSARAKALTDIVNLVDQIE-YKDENGHDIL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IY +LI  F     + A +F TP  V  +   L+    D   K        +YD  CG
Sbjct: 181 GDIYTYLIAEFAGNSGKKAGEFYTPHQVSEILAKLVTLNLDPGIKNP-----EVYDFACG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L    + V +          L   GQEL   T+ +    +++  +     R  +  
Sbjct: 236 SGSLLLTVQDQVPN--------RRLKYAGQELNTTTYNLARMNLMMHDV-----RYQNMT 282

Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           ++   TL  D   G           F   ++NPP+  +W+ + + + K+ +  E G    
Sbjct: 283 LKNADTLEMDWPDGIDEHGVDHPHSFDMVVANPPYSARWDNNDNKL-KDPRFKEYG---- 337

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   +     FL+H    L+      G  AIVL    LF    G+ E++IR+ LLE + 
Sbjct: 338 ALAPKTKADYAFLLHGLYHLKQ----DGTMAIVLPHGVLFR---GAKEAQIRKALLEKNQ 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP +LF+ T I T + +L   K  +    V  I+A+  +   +N    + ++  
Sbjct: 391 IDAIIGLPANLFYSTGIPTVVLVLKKNKENK---DVLFIDASKNFEKGKN----QNVLRK 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI- 502
           +   +I+  Y  R++  K++ +            + + R +          L +L  ++ 
Sbjct: 444 EDIDKIIGTYKERKDVDKYAHVATIDEIKENDYNLNIPRYVDTFEPEPPVDLGKLTKEME 503

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
             +K     QS  L ++K +  +        +   + +++    
Sbjct: 504 ETQKEIEQTQSELLGMMKELTSKDEKTQNDLNEFIKMLENEVKH 547


>gi|262166148|ref|ZP_06033885.1| type I restriction-modification system M subunit [Vibrio mimicus
           VM223]
 gi|262025864|gb|EEY44532.1| type I restriction-modification system M subunit [Vibrio mimicus
           VM223]
          Length = 860

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/733 (18%), Positives = 258/733 (35%), Gaps = 111/733 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  D+   IL F   + L               E      
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANDYKDYILGFIFYKFLSDKQVQFLLQNDFDNELISKVS 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ D   FV+      +A  + ++T             R+ L ++    + + K +F+ 
Sbjct: 62  EADTDTVKFVQDELGYFIAYDNLFSTWVNDGKDFDIAYVRDALSAFSRLINPDHKDLFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K              +    + I +        V+  IYE+LI  F + 
Sbjct: 122 I-FTTLETGLSKLGESAAAQTKAAMSLIHLINDIPMKGKQ-DYDVLGFIYEYLISHFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++ +               +YDPT G+G  L +    V  
Sbjct: 180 AGKKAGEFYTPHEVSVLMSEIMAEHLKNRKDIQ------IYDPTSGSGSLLINIGQSVE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--F 287
                     +  + QEL+  T+ +    + +R +  +     + +  +      +    
Sbjct: 233 --KRLDAQNNIRYYAQELKQNTYNLTRMNLFMRGILPNNIITRNADTLEDDWPIDNEKTH 290

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R    +SNPP+ +KW       + E KN +      GL   +     FL+H    L+
Sbjct: 291 EPMRVDAVVSNPPYSQKW-------DPEFKNKDPRYAPFGLAPKTKADYAFLLHDLYHLK 343

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   IVL    LF    G  E +IR  L+E + I+A++ LP ++FF T I T +
Sbjct: 344 P----DGIMTIVLPHGVLFR---GGDEGKIRENLIEKNHIDAVIGLPANIFFGTGIPTVI 396

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
            +L   +T +    V +I+A+  +        K   +     R+I+D    R+   K++ 
Sbjct: 397 LVLKRIRTSD---DVLIIDASKGFIK----DGKNNKLRACDIRRIVDTVSDRQPQEKYAA 449

Query: 467 ML--DYRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMM 523
           ++  D        + + R +  S   +   + A +   I   +L  L   +W  +     
Sbjct: 450 LVSRDTIRANGYNLNIPRYVDSSEETESWDIYASMFGGIPNNELESL-AHYWQAMPNLKE 508

Query: 524 QQIYPYGWAESFVK-ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
               P     S +K  ++K+       VK  K+        F     ++     +  +  
Sbjct: 509 SLFSPTSSEYSALKVTNVKAAIDHHSDVKQFKAQYHQAFGGFEAYLKQSLITELLQVKRS 568

Query: 583 PDTNLTEYEN------VPYLESIQDY----------------FVRE-------VSPH--- 610
              ++   E       +P ++    Y                   E       V PH   
Sbjct: 569 QQQDILSTEIFTRLKGIPLIDKYDAYQLLDDQWQLLNADLEMIQTEGIETCKVVEPHMVT 628

Query: 611 ---------VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
                    V D ++ +IF  E  ++              Y  + + K+Q I+  L+ ++
Sbjct: 629 KKQKGKDVQVQDGWLGRIFPFELVEKT-------------YLTEEAAKIQAINVRLQSID 675

Query: 662 AQIATLLEEMATE 674
           A+I  L + ++ E
Sbjct: 676 AEIQELFDSLSEE 688


>gi|145633239|ref|ZP_01788970.1| type I modification enzyme [Haemophilus influenzae 3655]
 gi|144986085|gb|EDJ92675.1| type I modification enzyme [Haemophilus influenzae 3655]
          Length = 571

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 193/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 36  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 95

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRN---------- 98
           L     + + E                A   F+        TL   +  N          
Sbjct: 96  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPVSARWQTLQEVSILNTGAELPWGGK 155

Query: 99  ---------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    +    I   ++  K + +     +      +  ++     +F+    + + 
Sbjct: 156 LSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEP 215

Query: 150 V---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 216 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 265

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 266 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 321

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 322 D------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 368

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 369 GTPTKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 422

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP+ LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 423 VECMVALPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 477

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +   +I D   + +          F +             VL P R     ++       
Sbjct: 478 NDISKIADTLHAWQTSDGYEDQAAFCKSATLEDIAGYEF-VLTPGRYVGTAEQEDDGVPF 536

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 537 AEK-MQNLTALLKEQFAK 553


>gi|253699076|ref|YP_003020265.1| type I restriction-modification system, M subunit [Geobacter sp.
           M21]
 gi|251773926|gb|ACT16507.1| type I restriction-modification system, M subunit [Geobacter sp.
           M21]
          Length = 827

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/523 (18%), Positives = 200/523 (38%), Gaps = 60/523 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +                 +  ++
Sbjct: 4   KKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISD--------------KYADAD 49

Query: 67  IDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTI 124
               + V   G SF         S +G       +   + S      ++ F DFD  + +
Sbjct: 50  CFAPAVVIPPGASFKDMIVLKGKSDIGEKINTQVIAPLVKSNERRLGRSDFPDFDDPNRL 109

Query: 125 A-RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                K   L  +   F    ++   +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 110 GEGQAKVERLTNLISIFENPALDFSKNRAEHDDILGDAYEYLMRHFATESGKSKGQFYTP 169

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++      + + +     + YDPTCG+G  L                   +
Sbjct: 170 SEVSRVVAKVI-----GISRANIVASTSAYDPTCGSGSLLLKVAEEAGKH---------I 215

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE +  T  +    M++      P  ++       +   KD    + + Y ++NPP
Sbjct: 216 TLEGQEKDVTTAGLARMNMILHHF---PTANILSGNTLAAPKFKDGKQLRTYDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K             N +  RF  G+P    G   +L+H+   ++      G+AA +L
Sbjct: 273 FSDKTWSTGLL----PANDDFERFAWGVPPTKQGDYAYLLHIIRSMK----STGKAACIL 324

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E+ IR+ L+ +  ++ I+ LP +LF+ T I   + +L       R+G
Sbjct: 325 PHGVLFRGNA---EATIRKQLVRSGYLKGIIGLPANLFYGTGIPACILVLDKENAAGRKG 381

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGY--- 475
            V +I+A+  +    N+ +    + D    +I+D +  ++  + +++R++ +        
Sbjct: 382 -VFMIDASKGFIKDGNKNR----LRDQDIHKIVDTFARQDDSDPRYARLVPFDEIAAPAN 436

Query: 476 -RRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWL 516
              + + R +  +   D   +   L   I  R +  L + + +
Sbjct: 437 DYNLNLPRYIDSTIPEDLQDIDGHLFGGIPQRDIDALDRYWQV 479


>gi|284108344|ref|ZP_06386408.1| Type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829905|gb|EFC34191.1| Type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 545

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 123/554 (22%), Positives = 209/554 (37%), Gaps = 55/554 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------R 56
               +  SL ++IW  A  + G      +   ILP    +RL    +   + +      R
Sbjct: 17  NTEANDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFAKRLCDVFDDELNRIATEVGSR 76

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRN---NLESYIA 105
           EK      ++    +  K A   FY            +S+    S             IA
Sbjct: 77  EKAFQLVVADWRRVADKKKAMVRFYLPLMPKDTEQPVWSVIRKLSDKIGEGVTTHMREIA 136

Query: 106 SFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             +   K I +  DF++T    R      L  + +  S   L    V   ++   YE+LI
Sbjct: 137 RENPLLKGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLADVEADIIGKSYEYLI 196

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F     + A +F TP +V  +   +L          +P     +YDPTCG+GG L   
Sbjct: 197 RKFAEGSGQSAGEFYTPGEVGEIMARVL----------APDPGMEIYDPTCGSGGLLIKC 246

Query: 224 MNHVADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +       K        L   GQE  PET A+    M+I  +E       +   +  
Sbjct: 247 ELAMEAKVKAAKKTKDAPLPLKLFGQEYVPETWAMANMNMIIHDMEGQIEIGDTF--KNP 304

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSML 337
              ++     + F   ++NP + +        +E ++ N EL RF  G G P  S     
Sbjct: 305 RFRAEKSGKLRTFDRVVANPMWNQD-----SYIEADYDNDELDRFPAGAGFPGKSSADWG 359

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALP 394
           ++ H+   L    N  GRAA+VL +     G   +G   E  +R+W ++ DLIE+++ LP
Sbjct: 360 WVQHMHASL----NDKGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIESVLYLP 415

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T     +  L+  K   R+GK+ L+NA+ ++      G  +  I  +   +I  
Sbjct: 416 ENLFYNTTAPGIVLFLNKAKPRARQGKIFLVNASQVFEK----GDPKNFIPPEGIARIAG 471

Query: 455 I-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           I    +E  K SR++ +         +  P R     +      L   +           
Sbjct: 472 ILIKWKEEEKLSRIVAHAELKKNDYNIS-PSRYIHTGEAEAYRPLAEIVADLDAIEEEAK 530

Query: 514 FWLDILKPMMQQIY 527
                L+ ++++I 
Sbjct: 531 ETDRALREILERIG 544


>gi|68250154|ref|YP_249266.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 86-028NP]
 gi|68058353|gb|AAX88606.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 86-028NP]
          Length = 556

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 190/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +       +  ++ +        Y
Sbjct: 21  LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDNFTHQQEKIQAELSDAENPLY 80

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------L 100
           L     + + E                A   F+  +      L   +  N          
Sbjct: 81  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGK 140

Query: 101 ESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD-- 152
            S +A   D+A    E  +      + R+         L  +   FS       T     
Sbjct: 141 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGEP 200

Query: 153 ------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 201 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 250

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 251 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 306

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 307 D------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 353

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 354 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 407

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 408 VECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 462

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I D   + +          F +             VL P R     ++       
Sbjct: 463 DDIAKIADTLHTWQKSDGYEDQAAFCKSATLEEIKDNDF-VLTPGRYVGTAEQEDDGVPF 521

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 522 AEK-MQNLTALLKEQFAK 538


>gi|253315524|ref|ZP_04838737.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
          Length = 446

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 113/488 (23%), Positives = 194/488 (39%), Gaps = 68/488 (13%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGSNIDLE-------SFVKVA 76
           +   ++F   IL     R L    E     A+  + + +  +  D E         +   
Sbjct: 1   NMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQV 60

Query: 77  GYSF------------YNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST 123
           GY                T ++ +  L +T  R    S +   S+N    +F D D SST
Sbjct: 61  GYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSST 119

Query: 124 ---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP
Sbjct: 120 RLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + V  +   ++ D  D L        R +YDPTCG+G  L              K   + 
Sbjct: 180 QQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG----------KETQVY 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE    T+ +    ML+  +  +     + +I+   TL    F G  F   ++NPP
Sbjct: 222 RYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDAVIANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +  KW  D      E  +G        L   S     F+ H+ + L    +  G  A+VL
Sbjct: 277 YSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVL 327

Query: 361 SSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
               LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++ 
Sbjct: 328 PHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQD 382

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRI 478
             V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   K+S     +       
Sbjct: 383 DNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDY 438

Query: 479 KVLRPLRM 486
            +  P  +
Sbjct: 439 NLNIPRYV 446


>gi|255011914|ref|ZP_05284040.1| N-6 DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313149748|ref|ZP_07811941.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138515|gb|EFR55875.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 497

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 205/538 (38%), Gaps = 63/538 (11%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTITKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETEEA 60

Query: 56  R------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  ++Y +      +   FV   G  +    E     LG+       +  IA   D
Sbjct: 61  LISSGGDKEYASL----PEQHRFVIPDGCHWQEVRE-RTENLGAAIVGAMRQIEIA-NPD 114

Query: 110 NAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               +   F       + +     +  + ++ S  +L     P  +M + YE L+++F  
Sbjct: 115 TLYGVLSMFSSQKWTNKAILNDSKIRDLIEHLSKRKLGNKDYPADLMGDAYEILLKKFAD 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ ++ 
Sbjct: 175 DSKAQAGEFYTPRSVVRLLVHIL----------DPKPGETVYDPACGSGGMLIEAIRYM- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               H          GQE      A+    + +             N+ QG TL      
Sbjct: 224 ----HDDSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDPKIL 272

Query: 289 GK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF  +             + +  R   G P  S G   ++ H+  
Sbjct: 273 QGGNIAKFDCVIANPPFSLENWGATG-----WSSDKYKRNIYGTPSDSCGDYAWIQHMIC 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    +G GR A+V+    LF    G+ E+EIR+ L+E+DLIEA+V L   LF+ T ++
Sbjct: 328 SM---SSGKGRMAVVMPQGILFR---GNQEAEIRKQLVESDLIEAVVTLGDKLFYGTGLS 381

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
               I+   K     G++ +I+ + + T    + + + I+ ++   ++  +Y +  +   
Sbjct: 382 PCFLIIRRMKPAHHSGRILMIDGSKILT----QKRAQNILEENDIDRLYSLYQNYSDEED 437

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR---LEADITWRKLSPLHQSFWLDI 518
           +SR++  +    +   +     + +  ++         E    +  +  L + F L I
Sbjct: 438 YSRIVTLQEIRDKEYNLSPNRYVVYHKEEIRPYAEVLAEFKQAYEDVKRLEKEFSLLI 495


>gi|225076051|ref|ZP_03719250.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens
           NRL30031/H210]
 gi|224952611|gb|EEG33820.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens
           NRL30031/H210]
          Length = 871

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 118/532 (22%), Positives = 215/532 (40%), Gaps = 60/532 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREK---YLAF 62
           +   LA  IW++A  +    +  ++   IL F   + L   LE        EK       
Sbjct: 2   NKQQLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADEL 61

Query: 63  GGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
             SN +L + VK      ++    ++T     S     + R  + ++  + +DN  A+F+
Sbjct: 62  TESNGELVNHVKRNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTAVFD 121

Query: 117 DF--DFSSTIARL-EKAGLLYKICKN----FSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                  S +++L + A       K+     + I +      D V+  IYE+LI  F + 
Sbjct: 122 GIFKTLESGLSKLGDTAVSQTNAVKDLFVLIADIPMDGKQGYD-VLGFIYEYLISMFAAN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++ D      +       ++YDPT G+G  L +  + VA 
Sbjct: 181 AGKKAGEFYTPHEVSLLMSEIIADHLKDREEI------SIYDPTSGSGSLLINIGHSVA- 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              H K    +  + QEL+  T+ +    +++R +        +   +   TL  D    
Sbjct: 234 --KHLKSADSIKYYAQELKENTYNLTRMNLVMRGI-----LPSNIFTRNADTLEDDWPLE 286

Query: 290 KR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                    +SNPP+ + W       +  +K     RF  G+   +     FL+H    L
Sbjct: 287 GEPLYLDAVVSNPPYSQPWNPKDKEGDIRYK-----RF--GVAPQAKADFAFLLHDLFHL 339

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G   IVL    LF    G  E +IR+ L+E + I+AI+ LP ++FF T I T 
Sbjct: 340 K----PDGIMTIVLPHGVLFR---GGEEEKIRKNLIEYNHIDAIIGLPANIFFGTGIPTI 392

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFS 465
           + +L     E  R  V +I+A+  +  +     K   +     ++I+D     RE  KFS
Sbjct: 393 IIVLRQ---ERERNDVLMIDASKHFIKV----GKNNHLQASDIKRIVDCVTHRRELPKFS 445

Query: 466 RMLDYRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
           R++           + + R +  +  +++  + A +   I   +L+     +
Sbjct: 446 RIVPKAEIVANGYNLNIPRYVDSAEPVEQWDIFATMHGGIPKAELAQFTDYW 497


>gi|154496690|ref|ZP_02035386.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC
           29799]
 gi|150273942|gb|EDN01042.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC
           29799]
          Length = 524

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 196/548 (35%), Gaps = 69/548 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-G 64
            +   + N + + A+ L       ++   +LP   ++ L  + E     ++++Y      
Sbjct: 2   TTKKDIENALMRGADTLRDTIDAANYKDYVLPIMFVKYLSDSYEDALDELKKEYSGIRLE 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                  F      SF +  +   S          +    A  +     +    D++S  
Sbjct: 62  RQKRYLPFTIAEECSFQSLYDQRFSDKIGQLINAAMRKIEADNNQQLAGVLNTVDYNSEN 121

Query: 125 ---ARLEKAGLLYKICKNFSGIELHPDT-------VPDRVMSNIYEHLIRRFGSEVSEGA 174
                  K  +L  + ++F  + L P         VP  V+ + YE++I +F S   + A
Sbjct: 122 ALGTLDHKKAILRDLLEDFESLSLRPSEIEVKAGQVPADVIGDAYEYMIGQFASMAGKKA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  V  +   ++                 +YDPTCG+G  L  A           
Sbjct: 182 GSFYTPAAVSEIMARIV----------DVQPGERVYDPTCGSGSLLIKAAK--------K 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
           +    +  +GQE+   + A+    M I  +              G TL+  LF       
Sbjct: 224 QNSKEVSIYGQEVNGSSVAMAKMNMYIHEIRDAKIA-------WGDTLANPLFLDSDGNL 276

Query: 292 --FHYCLSNPPFGKKWE------------KDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             F   ++N PF K               K K   + E    +  RF  G+P  S G   
Sbjct: 277 LLFDAIVANMPFSKDKWASGFNPGGESSGKGKKEFKMEASLDKFHRFDWGVPPASKGDWA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H+   L +     GR A V     LF G A   E  IR+ ++E +L++A++ LP +L
Sbjct: 337 FLLHMIASLSV----NGRIAAVAPHGVLFRGAA---EGRIRQKVIEENLLDAVIGLPENL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRIINDDQRRQILD 454
           F+ T+I   + +    +T      +  I+A+    +      +   +  +  +    I++
Sbjct: 390 FYGTSIPACILVFKKNRTNT---DILFIDASKKDENGNPRYIKASNQNELAPEHIDAIVE 446

Query: 455 IYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            Y +R +  KF+ +            + + R +      +   + +++A+I   K     
Sbjct: 447 AYQTRTDKDKFAHVATLEEIQENEYNLNIPRYVDTFEEEEPIDIQKVQANIDRLKAEIAE 506

Query: 512 QSFWLDIL 519
               +D  
Sbjct: 507 AETQMDAY 514


>gi|145637804|ref|ZP_01793453.1| transcription elongation factor NusA [Haemophilus influenzae
           PittHH]
 gi|145268997|gb|EDK08951.1| transcription elongation factor NusA [Haemophilus influenzae
           PittHH]
          Length = 572

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 191/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 36  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 95

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRN---------- 98
           L     + + E                A   F+         L   +  N          
Sbjct: 96  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPVSARWQALQEVSILNTGAELPWGGK 155

Query: 99  ---------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    +    I   ++  K + +     +      +  ++     +F+    + + 
Sbjct: 156 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEP 215

Query: 150 V---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 216 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 265

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 266 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 321

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 322 D------FGKYNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 368

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 369 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKGIINADL 422

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 423 VECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 477

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I +   + +          F +             VL P R     ++       
Sbjct: 478 DDIAKIANTLHAWQKSDGYEDQAAFCKSATLEEIADNDF-VLTPGRYVGTAEQEDDGVPF 536

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 537 AEK-MQNLTALLKEQFAK 553


>gi|217425685|ref|ZP_03457176.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 576]
 gi|217391361|gb|EEC31392.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 576]
          Length = 870

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 127/660 (19%), Positives = 240/660 (36%), Gaps = 98/660 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W++ + L G    + +   +L    ++ +       R              
Sbjct: 74  KKSDLYSSLWESCDLLRGGMDASQYKDYVLVLLFIKYVSDKYAGQR-------------- 119

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS--FSDNAKAIFEDFDFSSTI 124
                     G SF +     ++  G  +  + +   I     + N  +   DF+ S  +
Sbjct: 120 --YAPITIPEGASFAD----MVALKGKPDIGDQINKKIVGPLAAANKLSDMPDFNDSGKL 173

Query: 125 A-RLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               E    L  +   F   +L         D ++ + YE+L+R F +E  +    F TP
Sbjct: 174 GTGAEMVRRLTDLIAVFENPDLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTP 233

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++      +         T+YDPTCG+G  L    +           P  +
Sbjct: 234 AEVSRIMAQII-----GISSTRTSSETTVYDPTCGSGSLLLKVGDAA---------PTSV 279

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T  +    M++     +P   + +         +D    K F + ++NPP
Sbjct: 280 TLYGQEKDSATSGLARMNMILHD---NPTALIGQGNTLTDPKFRDGDRLKTFDFVVANPP 336

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  K          +  N   GRF   G+P    G   +L+H+   L+      G+ A +
Sbjct: 337 FSDKRWSTGL----DPFNDPYGRFDTFGVPPAKQGDYAYLLHIVRSLK----STGKGACI 388

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+EIRR L+    I+ I+ LP +LF+ T I   + ++     + R+
Sbjct: 389 LPHGVLFRGNA---EAEIRRNLIRYGYIKGIIGLPANLFYGTGIPACIIVVDKEDAQARK 445

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYR- 476
           G + +I+A+  +         +  + +    +I+D++  ++  + +++RM+         
Sbjct: 446 G-IFMIDASQGFIK----DGPKNRLREQDIHRIVDVFNRQDESDPRYARMVSVAEIEKND 500

Query: 477 -RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWL--DILKPMMQQIYPYGWA 532
             + + R +  S   D   L   L   I    +  L   + +   + K + +   P  + 
Sbjct: 501 FNLNLPRYIDSSVAEDIQDLKGHLHGGIPDADVDALDDYWAICPSLKKTLFKPRTPGYYD 560

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR--ADPVTDVNG-EW-------- 581
            +  K +IKS   +            AFI   G    +  A  V  +   E         
Sbjct: 561 LAVDKAAIKSTILQH-------PQFAAFIEEMGAHFEQWRARTVQTLKALEPGFHPKQLI 613

Query: 582 --IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY----IDKIFIDEKDKEIGRVGYEI 635
             + D  L  YE  P    I  Y   +V  H+ D +     D  ++   D  + +  Y I
Sbjct: 614 VELADGLLNHYEGKPL---IDAY---DVYQHLMDYWEETMQDDAYLLASDGWVAKT-YRI 666


>gi|312886110|ref|ZP_07745731.1| type I restriction-modification system, M subunit [Mucilaginibacter
           paludis DSM 18603]
 gi|311301409|gb|EFQ78457.1| type I restriction-modification system, M subunit [Mucilaginibacter
           paludis DSM 18603]
          Length = 519

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 106/529 (20%), Positives = 189/529 (35%), Gaps = 74/529 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           MT+ T     + + +WK  +   G    + +   +L    ++ L    +    A  +KY 
Sbjct: 1   MTKITQK--DINDAVWKACDTFRGSIDPSVYKDYVLTMLFIKYLSDVHDDKMDAYLKKYN 58

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-----FSDNAK 112
             +      +  E F+      F                   L     +     +S++  
Sbjct: 59  GDMERAKRAMQHERFIVPEHSHFNFLYNSRNEANIGELINIALADLEEANREKLYSEDGA 118

Query: 113 AIFEDFDFSSTIAR--LEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFG 167
            IF++ DF+S+      +K   L  +  +F+   + L P  +    ++   Y  LI  F 
Sbjct: 119 GIFQNIDFNSSKLGEPKDKNTRLKHLLLDFNKDALNLRPSHLDGVDIIGGAYMFLIENFA 178

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  + A +F TP++V  L   L                  + DPTCG+   L  A   V
Sbjct: 179 SDAGKKAGEFFTPKEVSTLIAKLT----------KSKPGSRICDPTCGSASLLIKAGEEV 228

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                          +GQE    T A+ V  M +   +       +  I+ G T+     
Sbjct: 229 G--------SDNFSLYGQEANGSTWALAVMNMFLHGFD-------NATIRWGDTIRNPKL 273

Query: 288 TG----KRFHYCLSNPPFGKKWEK-------DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                  +F   ++NPPF             DK  V  + +  +  RF  G+P  S G  
Sbjct: 274 KEGDMLMKFDTVVANPPFSLDKWGKVEDKEGDKTTVSYDPETDKYNRFWRGVPPKSKGDW 333

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H+   L    N  GRA +V+    LF   +   E  IR+  +E +L+EA++ LP +
Sbjct: 334 AFISHMIETL----NEHGRAGVVVPHGVLFRSSS---EGRIRQRTIEENLLEAVIGLPAN 386

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T I   + I + +K+         I+A+  + + +N+ +    +       I+  Y
Sbjct: 387 LFFGTGIPAAILIFNKQKS---SNNFLFIDASKQYKNAKNQNR----LRARDIELIVKTY 439

Query: 457 VSRENG---------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
                G         KFS +            +  P  +    ++  + 
Sbjct: 440 RDFAEGKLKPGIVEEKFSYVATPEEVQENDYNLNLPRYVDTFEEEPEVD 488


>gi|229088748|ref|ZP_04220305.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-44]
 gi|228694573|gb|EEL47992.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-44]
          Length = 512

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 111/551 (20%), Positives = 213/551 (38%), Gaps = 69/551 (12%)

Query: 26  FKHTDFGKVILPFTLLRRLECAL------------------EPTRSAVREKYLAFGGSNI 67
              +++   +L     + L   L                  E      RE        N 
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTQEKQTELYRESLADEDIKND 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKAIFEDFDFS 121
            +E+ V   GY       +++ T  +       N  N     +++  D    +F+D D  
Sbjct: 61  LIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQLNDLNKAFIDLSTKYDQFNGLFDDVDLK 120

Query: 122 STI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           S        ++   + ++ K  + +++        V+ + YE LI +F SE  + A +F 
Sbjct: 121 SKKLGSDDQQRNITITEVLKKLNDVDVTGHN--GDVIGDAYEFLISQFASEAGKKAGEFY 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   +     +         + +++DPT G+G  + +  +++         P 
Sbjct: 179 TPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNIRSYI-------NHPD 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCL 296
            +  HGQEL   T+ +    +++  ++ +  R     ++ G TL+KD  T +   F   L
Sbjct: 226 SVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDTLNKDWPTDEPYTFDSVL 280

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  KW  D   ++    +    R+G  L   S     FL+H    L+      G  
Sbjct: 281 MNPPYSAKWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK----DSGTM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF T+I T + IL   +T 
Sbjct: 332 AIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGTSIPTTVIILKKNRTT 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
                V  I+A++ +T  +N    +  ++ +   +I++ Y +RE+  K++ +  +     
Sbjct: 389 R---DVLFIDASNEFTKGKN----QNKLSKENIDKIVETYKNREDVEKYAHVATFDEIKE 441

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
               +  P  +    ++  +       T + +          +   +    +    AE  
Sbjct: 442 NDFNLNIPRYVDTFEEEAPVDMTSVGSTIKDIRKEKAELEASLYNMIFSLQFDEENAEWI 501

Query: 536 VKESIKSNEAK 546
                  N  K
Sbjct: 502 KGALEVFNREK 512


>gi|19881311|gb|AAM00901.1|AF486570_2 HsdM [Campylobacter jejuni subsp. jejuni ATCC 33560]
 gi|19698527|gb|AAL93191.1| type I restriction enzyme M protein [Campylobacter jejuni]
          Length = 509

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 194/518 (37%), Gaps = 60/518 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREKYLAFGGSN 66
              L   IWK A DL G     DF   +L F     +   L+     +  + Y       
Sbjct: 7   REELHKTIWKIANDLRGSVDGWDFKSYVLGFLFYYFICENLKNYVLKSFEQDYENLSDEM 66

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------------SFSDNAKA 113
            +      +    F+    +  S +       NL   ++                 + K 
Sbjct: 67  AENGRDTIINAKGFFIKPSHLFSNIFKNAKLENLNEKLSVVFKEIESSANGSESEKSFKG 126

Query: 114 IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F+D D  S        E+   + KI +  S ++LH +        + YE L+  + S  
Sbjct: 127 LFDDLDLYSNKLGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMYASNA 186

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP++V  L   + L  +    K        +YDP CG+G  L      +   
Sbjct: 187 GKSGGEFFTPQEVSKLLVEITLYNNAKPNK--------VYDPACGSGSLLLQYKKSL--- 235

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLF 287
               K  P     GQE+   T+ +    M +  +          +I  G T    S++  
Sbjct: 236 ----KSDPKKGYFGQEINITTYNLARMNMFLHDVNY-----TRFDIAHGDTLINPSENHK 286

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F   +SNPP+  KWE   +A+     N E       L   S   + F+MH  + L 
Sbjct: 287 ELEPFDAIVSNPPYSTKWEGKDNALLI---NDERFNKAGVLAPTSKADLAFVMHSLSWL- 342

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +  G AAIV     ++ G A   E +IR++++E + ++ +++L  +LFF T+IA  +
Sbjct: 343 ---SEKGSAAIVCFPGVMYRGGA---ERDIRKYMIEENFVDCVISLAPNLFFGTSIAVCI 396

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            +L   KT++       INA + +  + N+     +++ +    IL +Y  R+     ++
Sbjct: 397 LVLRKNKTDK---NTLFINANEEFIKVTNK----NMLSKENLENILKLYKDRKEVPHLTK 449

Query: 467 MLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI 502
           ++             V   +      +   +  L  +I
Sbjct: 450 LVSIEEIAKNDYNLSVSSYVEAKDTREIIDIKALNKEI 487


>gi|256023433|ref|ZP_05437298.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia sp. 4_1_40B]
 gi|315618356|gb|EFU98944.1| type I restriction-modification system, M subunit [Escherichia coli
           3431]
          Length = 812

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 126/685 (18%), Positives = 237/685 (34%), Gaps = 95/685 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +                      
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKY----------------KG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
                 V   G SF    +  ++        + +   I   ++    K + ++ DF+   
Sbjct: 48  DPYGMIVIPKGASF----DDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G+ L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLSKLVGIFEGLNLSSNRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L            + +    L
Sbjct: 164 AEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKV---------NDEARRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNP 299
              GQE++  T A+    M++     +    + +         K+     + F + ++NP
Sbjct: 209 SIFGQEMDNATSALARMNMILHN---NATAKIWQGNTLSDPQWKEANGKLKAFDFAVANP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K   +        K     RFG G+P   +G   FL+H+   L+      G+ A++
Sbjct: 266 PFSNKNWTNGLT----PKKDPFERFGWGIPPEKNGDYAFLLHIIKSLK----STGKGAVI 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+ IR  L++   I+ ++ LP +LF+ T I   + ++       R+
Sbjct: 318 LPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVIDKEHAHSRK 374

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFGYR-- 476
           G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+          
Sbjct: 375 G-IFMIDASRGFIKDGNKNR----LRSRDIHRIVDVFNHQRTVPGYSRMVPSSEIAGNDY 429

Query: 477 RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPYGWAE 533
            + + R +      D   L A L+  I  R +  L   + +   +   +     P     
Sbjct: 430 NLNIPRYIESGEPEDLHDLTAHLQGGIPARDVDALQDYWRVFPALRNVLFADDRPGYCRA 489

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW-------IPDTN 586
               + +K       + K    F    +  F      A       G+        I +  
Sbjct: 490 QVNAQQVKPTILAHQEFKD---FATRSLLPFKAWVKEASLEEIRKGDKPKALIHDISEML 546

Query: 587 LTEYENVPYLESIQDY----------FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI- 635
           L +Y N   L     Y             +V   + D +     I E     G+ G  I 
Sbjct: 547 LAQYANSELLNKYSVYQILMDYWTDVMQDDVYAIMQDGWQAAAQIRELQPVKGKDGKNIW 606

Query: 636 ------NFNRFFYQY-QPSRKLQDI 653
                  F +  Y+     R L +I
Sbjct: 607 KETHDFEFTKRRYKADVLPRSLVEI 631


>gi|254438740|ref|ZP_05052234.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307]
 gi|198254186|gb|EDY78500.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307]
          Length = 911

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 105/504 (20%), Positives = 199/504 (39%), Gaps = 68/504 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + + + +W + + L G    + +   +L    ++ +          + E  +  GGS 
Sbjct: 4   KKSEIYSSLWASCDALRGGMDASQYKDYVLVLLFVKYVSDKYAGDPDGLIE--IPEGGSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSST- 123
            D+ +                    G     + +   I+  ++  + K + +  DF+   
Sbjct: 62  ADMVALK------------------GDKEIGDKINVIISRLAEANDLKGVIDVADFNEEE 103

Query: 124 --IARLEKAGLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 E    L  +   F+  EL   +     D ++ + YE+L+R F +E  +    F 
Sbjct: 104 KLGTGKEMVDRLSNLIAIFNRPELDFRNNRAEGDDILGDAYEYLMRHFATEAGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +    +          S    +T+YDPTCG+G  L  A +         + P 
Sbjct: 164 TPAEVSRIMAKAI------GISASNRPDQTIYDPTCGSGSLLLKARD---------EAPA 208

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE +  T A+    M++   +         N         D    K F + ++N
Sbjct: 209 GITIYGQEKDVATRALAKMNMVLH--DDPTAEIWRDNTLASPHFKNDTGGLKTFDFVVAN 266

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF  K W    D V     N +  RFG G+P   +G   +L+H+   L+      G+ A
Sbjct: 267 PPFSDKAWSTGLDPV-----NDQYDRFGYGVPPAKNGDYAYLLHIVASLKT----TGKGA 317

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   ESEIR  ++    I+ I+ LP +LF+ T I   + ++     + 
Sbjct: 318 VILPHGVLFRGNA---ESEIREKIIRKGYIKGIIGLPANLFYGTGIPACIIVIDKENAQA 374

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML---DYRTF 473
           R G + +++A+  +    N+ +    +      +I+D +  + E  K+SRM+   +    
Sbjct: 375 RTG-IFMVDASKGFVKDGNKNR----LRSQDLHKIVDAFTKQIEIDKYSRMVPLAEIEKH 429

Query: 474 GYRRIKVLRPLRMSFILDKTGLAR 497
           G+  + + R +  S   D   +  
Sbjct: 430 GF-NLNIPRYIDSSKPEDLQDIDA 452


>gi|312115547|ref|YP_004013143.1| type I restriction-modification system, M subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220676|gb|ADP72044.1| type I restriction-modification system, M subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 824

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 112/534 (20%), Positives = 211/534 (39%), Gaps = 65/534 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + + + +W++ + L G    + +   IL    ++ +        +AV    +  GGS 
Sbjct: 4   KKSQIYSSLWQSCDKLRGGMDASQYKDYILVLLFVKYVSDRYAGDPNAVI--VVPEGGSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            D+                      G     + +   IA  ++    K + +  +F+   
Sbjct: 62  ADMVKLR------------------GDKEIGDRINKIIAKLAEANGLKGVIDVANFNDPD 103

Query: 125 ---ARLEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 E    L  +   F   EL+        D ++ + YE+L+R F +E  +    F 
Sbjct: 104 KLGDGKEMIDRLSDLIAIFDRPELNFRKNRADGDDILGDAYEYLMRHFATESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   ++        + +  + +TLYDPTCG+G  L  A           + P 
Sbjct: 164 TPAEVSRIIAKVI------GIRHAKSVSQTLYDPTCGSGSLLLKA---------RSESPV 208

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            +  +GQE +  T A+    M++    ++D  RD + +        KD  + KRF + ++
Sbjct: 209 GITVYGQEKDVATRALAKMNMVLHDCPDADIVRDNTLSS--PYFREKDQ-SLKRFDFVVA 265

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K      ++  +      GRF  G P   +G   +L+H+   L+      G+ A
Sbjct: 266 NPPFSDKAWTTGVSLGSD---DPDGRFEYGTPPAKNGDYAYLLHVIASLK----STGKGA 318

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L    LF G A   E+EIR+ ++    I+ I+ LP +LF+ T I   + +L     + 
Sbjct: 319 IILPHGVLFRGNA---EAEIRKNIIAKGFIKGIIGLPANLFYGTGIPACIIVLDKENADR 375

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
           R G + +I+A+  +    N+ +    +      +I+D +  + E  KFSR++        
Sbjct: 376 RTG-IFMIDASKGFVKDGNKNR----LRAQDIHKIVDAFTKQIEIEKFSRLVPLSEIVKN 430

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
              + + R +  S   D   +A         +      S+W  +     +   P
Sbjct: 431 DFNLNIPRYIDSSEPEDLQDIAAHLLGGIPERDVDALSSYWGVLPDLRRELFGP 484


>gi|254448598|ref|ZP_05062057.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
 gi|198261787|gb|EDY86073.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
          Length = 494

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 114/492 (23%), Positives = 201/492 (40%), Gaps = 56/492 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + I P    +RL        +   E +       
Sbjct: 5   NKKKLEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIH------E 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFS 121
            D E       + F    E     +  T+        N    I + +     +F D  ++
Sbjct: 59  GDAEYAAMPMFHRFDIPQEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWA 118

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 119 NK-ERLPD-HLLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 176

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T ++                T YDPTCGTGG L +A+  +   G   +    + 
Sbjct: 177 TVVHLMTRIM----------GLKPGETAYDPTCGTGGMLLNAVMDLRSQGQEWR---GVH 223

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297
            +GQE+   T A+    M +  +E         ++ +G TL++  F      K+F    +
Sbjct: 224 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDQLKQFDVIFA 276

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPP+  KKW +DK A +        GR   G+P        F  H+   L+      GRA
Sbjct: 277 NPPYSIKKWNRDKFAAD------PYGRNLYGVPPQGCADYAFYTHIIKSLK---PDTGRA 327

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  IR+ ++E+D+IEA++ L   LF+ + + + + +L+  K  
Sbjct: 328 AMLWPHGVLFRDS----EKSIRKQVIESDIIEAVIGLGPSLFYNSTMESCVVVLNKNKRN 383

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGY 475
           + + +V  I+A++      ++ + R  +++     I   Y    ++      ++      
Sbjct: 384 KLKNRVLFIDASEE----ISKERGRTFLSEKNIDSICKKYFELDQDCNQVAFVELDEIRK 439

Query: 476 RRIKVLRPLRMS 487
               +  PL +S
Sbjct: 440 NHFNLSMPLYIS 451


>gi|227500129|ref|ZP_03930200.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217771|gb|EEI83071.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 487

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 240/491 (48%), Gaps = 47/491 (9%)

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +GG L+   + +    S       +   GQE+   +HA+C A MLI+  +    R++   
Sbjct: 1   SGGMLSTTYDMLKRRNS----GVDVRLFGQEILESSHAICAADMLIKGQD---IRNIRGG 53

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLP 329
             + +TL+ D F  ++    + NPPFG  W         +  V +EHK G  GRFG GLP
Sbjct: 54  DPEANTLTTDCFENQKIRLVIMNPPFGTPWGGKDAPSGQEKKVREEHKKGFNGRFGAGLP 113

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             +D  +LF+ H  NKL       GRAAI+ + S LF+G   SGES+ RRWL+END IEA
Sbjct: 114 ATTDAQLLFMQHAVNKL----TPDGRAAIISNGSSLFSGGTTSGESQTRRWLIENDYIEA 169

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQ 448
           I+ LP  LF+ T+IA Y +I+S  K ++R+GK+QLINA D++  +R   GKKRR I+ + 
Sbjct: 170 IIGLPGQLFYNTDIAIYAFIISKNKRKDRQGKIQLINAVDMFKPLRKSLGKKRREIDLES 229

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-------- 500
           R+ I+ +Y + E  ++S++     F Y+   V  PL+ S  L    + +LE         
Sbjct: 230 RKNIVKLYSAFEENEYSKIFPNEEFLYKEYAVYEPLQRSGSLSLENIKKLEDSVLFTSNS 289

Query: 501 ----DITWRKLSPLH----------------QSFWLDILKPMMQQIYPYGWAESFVKESI 540
                  + +L  ++                + +  D++  + +      + +    + +
Sbjct: 290 HIFNQADFEELQEMNPRNPEDEKKYQKYLKGKKYTDDVIDTLKENASDKHYDDLSEFQDL 349

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
             N  K +    S S +   +      D  A    +  G    DT   + E +   ++++
Sbjct: 350 LKNMLKDVDGH-SASRLNNILFELTEIDKNAVIQKNRKGTIELDTTTRDTEIIKLSQNVE 408

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           +YF +EV PHVPDA     + + K     ++G EI F ++FY+Y+   + + +  E   +
Sbjct: 409 EYFNKEVFPHVPDAIYFYDYDENKKNSKEKLGAEIPFTKYFYEYKELEESEKLLEEFISI 468

Query: 661 EAQIATLLEEM 671
           E ++++ L ++
Sbjct: 469 EKELSSSLIDL 479


>gi|217033077|ref|ZP_03438543.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128]
 gi|298737196|ref|YP_003729726.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|216945198|gb|EEC23885.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128]
 gi|298356390|emb|CBI67262.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 815

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 124/619 (20%), Positives = 233/619 (37%), Gaps = 71/619 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KARN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNT 103

Query: 125 ARLEKAGLL---YKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              E   ++     + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGENKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++             +       + +    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSADADIAKGGSSTLSNPLFTTENGMLKTFDYVVANPP 269

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 270 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGA 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + IL       
Sbjct: 326 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIILDKENAHA 382

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + D   ++++D + + +E   +S+M+        
Sbjct: 383 RKG-VFMIDASKDFKKDGNKNR----LRDQDVQKMIDTFNAYKEIPYYSKMVSLEEISAN 437

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              + + R +      +K   A + +     K        +  + K +   ++     E 
Sbjct: 438 DYNLNIARYIAAKPESEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKNTLFKKSDKEG 497

Query: 535 FVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
           +     +    K L ++            S    +     F   +P  +P T +  E + 
Sbjct: 498 YYALKTECENIKELIIQSLEYQTFHASVLSAFDRLELSTTFNDLEPGFNPKTLI--ESVC 555

Query: 584 DTNLTEYENVPYLESIQDY 602
              L E+E +  L+    Y
Sbjct: 556 SKVLYEFEKIEILDKYGVY 574


>gi|148827015|ref|YP_001291768.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittGG]
 gi|148718257|gb|ABQ99384.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittGG]
          Length = 558

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 98/558 (17%), Positives = 190/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 23  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 82

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------L 100
           L     + + E                A   F+         L   +  N          
Sbjct: 83  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPVSARWQALQEVSILNTGAELPWGGK 142

Query: 101 ESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD-- 152
            S +A   D+A    E  +      + R+         L  +   FS       T     
Sbjct: 143 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGEP 202

Query: 153 ------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 203 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 252

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 253 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 308

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 309 D------FGKYNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 355

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  ++ H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 356 GTPPKGNANYAWIQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 409

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           IE +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 410 IECMVALPGQLFTNTQIPACIWFLNCNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 464

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I +   + +          F +             VL P R     ++       
Sbjct: 465 DDIAKIANTLHAWQTSDGYEDQAAFCKSATLEEIKDNDF-VLTPGRYVGTAEQEDDGVPF 523

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 524 AEK-MQNLTALLKEQFAK 540


>gi|88194192|ref|YP_498984.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|87201750|gb|ABD29560.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
          Length = 490

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 206/525 (39%), Gaps = 72/525 (13%)

Query: 26  FKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGSNIDLE-------SFVKVAG 77
              ++F   IL     R L    E     A+  + + +  +  D E         +   G
Sbjct: 1   MDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQVG 60

Query: 78  YSF------------YNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST- 123
           Y                T ++ +  L +T  R    S +   S+N    +F D D SST 
Sbjct: 61  YFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSSTR 119

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                 E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+
Sbjct: 120 LGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQ 179

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   ++ D  D L        R +YDPTCG+G  L              K   +  
Sbjct: 180 QVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG----------KETQVYR 221

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE    T+ +    ML+  +  +     + +I+   TL    F G  F   ++NPP+
Sbjct: 222 YFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDAVIANPPY 276

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             KW  D      E  +G        L   S     F+ H+ + L    +  G  A+VL 
Sbjct: 277 SAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLP 327

Query: 362 SSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
              LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++  
Sbjct: 328 HGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDD 382

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK 479
            V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   K+S     +        
Sbjct: 383 NVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYN 438

Query: 480 VLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
           +  P  +    ++  +     + +     ++++ + Q     + +
Sbjct: 439 LNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 483


>gi|153807713|ref|ZP_01960381.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185]
 gi|160886165|ref|ZP_02067168.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483]
 gi|160889103|ref|ZP_02070106.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492]
 gi|149129322|gb|EDM20536.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185]
 gi|156108050|gb|EDO09795.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483]
 gi|156861570|gb|EDO55001.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492]
          Length = 497

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 105/511 (20%), Positives = 198/511 (38%), Gaps = 60/511 (11%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETEEA 60

Query: 56  R------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  ++Y +      +   FV   G  +    E     LG+       +  IA   D
Sbjct: 61  LISSGGDKEYASL----PEQHRFVIPDGCHWQEVRE-RTENLGAAIVGAMRQIEIA-NPD 114

Query: 110 NAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               +   F       + +     +  + ++ S  +L     P  +M + YE L+++F  
Sbjct: 115 TLYGVLSMFSSQKWTNKAILNDSKIRDLIEHLSKRKLGNKDYPADLMGDAYEILLKKFAD 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ ++ 
Sbjct: 175 DSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIRYM- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               H          GQE      A+    + +             N+ QG TL      
Sbjct: 224 ----HDDSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDPKIL 272

Query: 289 GK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF  +          E  + +  R   G P  S G   ++ H+  
Sbjct: 273 QGGNIAKFDCVIANPPFSLENWGAT-----EWSSDKYKRNIYGTPSDSCGDYAWIQHMIC 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    +G GR A+V+    LF    G+ E+EIR+ L+E+DLIEA+V L   LF+ T ++
Sbjct: 328 SM---SSGKGRMAVVMPQGILFR---GNQEAEIRKQLVESDLIEAVVTLGDKLFYGTGLS 381

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
               I+   K     G++ +I+ + + T    + + + I+ ++   ++  +Y +  +   
Sbjct: 382 PCFLIIRRMKQAHHSGRILMIDGSKILT----QKRAQNILEENDIDRLYSLYQNYSDEED 437

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +SR++  +    +   +     + +  ++  
Sbjct: 438 YSRIVTLQEIRDKEYNLSPNRYVVYHKEEIR 468


>gi|117676179|ref|YP_863755.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117615003|gb|ABK50456.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 567

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 183/516 (35%), Gaps = 87/516 (16%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M E        L   +W  A+ L      + +   +L    ++ +  A    +  ++   
Sbjct: 1   MNELEQEFLKDLEKKLWNAADKLRATLDASQYKHAVLGLIFVKYVSDAFSMRQEEIKADL 60

Query: 57  ---------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94
                          E  LA   +              F+  +E     L          
Sbjct: 61  TNPEHEYYLDPADFSEDELAEEIAAELEVRDFYTEKNVFWLPTESRWKFLQDNGPMVIGG 120

Query: 95  -----NTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSG 142
                + +    + +    DNA    E  +       +   A L+     L ++    + 
Sbjct: 121 ADLVIDGKTKKITSVGHLIDNALEGIERDNQKLKGVLNKHYASLKIDQAKLNELINLIAT 180

Query: 143 IELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           I  +  ++    ++ +IYE+ + +F     +    F TP  +V L   ++   +      
Sbjct: 181 IPFNHKSLNSKDILGHIYEYFLGQFALAEGKKGGQFYTPASIVSLIVEMIEPFEG----- 235

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCV 256
                  +YDP  G+GGF   +   +    +  +I P+     +  +GQE    T  +  
Sbjct: 236 ------RVYDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQRISIYGQEYNYTTWQLAA 289

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M IR L+ D         +  ST + D     R  + ++NPPF  K            
Sbjct: 290 MNMAIRGLDYD------FGKEPASTYTNDQHPDLRADFIMANPPFNMKEWNTG------- 336

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +    R+  G P   + +  ++ H+   L       G  A++L++  +      + E E
Sbjct: 337 VDDNDPRWVYGTPPSGNANFAWMQHMLYHL----APDGSQALLLANGSM--SSTTNNEGE 390

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLIN 426
           IR  L+ENDL+E +VALP  LF  T I   +W L+  K            +R+G+V  I+
Sbjct: 391 IRAALVENDLVECMVALPGQLFTNTQIPACIWFLAKNKKARTDKSGRKLRDRKGEVLFID 450

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           A +L      + +  R    D  +++ D+Y + + G
Sbjct: 451 ARNLGYM---KDRVLRDFTQDDIQKVADLYHAWKTG 483


>gi|215486218|ref|YP_002328649.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215264290|emb|CAS08643.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 812

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/685 (18%), Positives = 240/685 (35%), Gaps = 95/685 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +                      
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKY----------------KG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
                 V   G SF    +  ++        + +   I   ++    K + ++ DF+   
Sbjct: 48  DPYGMIVIPKGASF----DDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  + V  D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLSKLVGIFEGLDLSSNRVEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L            + +    L
Sbjct: 164 AEVSRILAKVI------GITPDTPRDATVYDPTCGSGSLLLKV---------NDEARRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNP 299
              GQE++  T A+    M++     +    + +         K+     + F + ++NP
Sbjct: 209 SIFGQEMDNATSALARMNMILHN---NATAKIWQGNTLSDPQWKEANGKLKAFDFAVANP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K   +        K     RFG G+P   +G   FL+H+   L+      G+ A++
Sbjct: 266 PFSNKNWTNGLT----PKKDPFERFGWGIPPEKNGDYAFLLHIIKSLK----STGKGAVI 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+ IR  L++   I+ ++ LP +LF+ T I   + ++       R+
Sbjct: 318 LPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVIDKEHAHSRK 374

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFGYR-- 476
           G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+          
Sbjct: 375 G-IFMIDASRGFIKDGNKNR----LRSQDIHRIVDVFNHQRTVPGYSRMVPSSEIAGNDY 429

Query: 477 RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPYGWAE 533
            + + R +      D   L A L+  I  R +  L   + +   +   +    +P     
Sbjct: 430 NLNIPRYIESGEPEDLHDLTAHLQGGIPVRDVDALKDYWRVFPALRNVLFADDHPGYCRA 489

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW-------IPDTN 586
               + +K       + K    F    +  F      A       G+        I +  
Sbjct: 490 QVDAQQVKPTILAHQEFKD---FATRSLLPFKSWVKEAGLEEIRKGDKPKALIHDISEML 546

Query: 587 LTEYENVPYLESIQDY----------FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI- 635
           L +Y N   L     Y             +V   + D +     I E     G+ G  I 
Sbjct: 547 LAQYANSELLNKYSVYQILMDYWADVMQDDVYVIMQDGWQAAAQIRELQPVKGKDGKNIW 606

Query: 636 ------NFNRFFYQY-QPSRKLQDI 653
                  F +  Y+     R L +I
Sbjct: 607 KETHDFEFTKRRYKADVLPRSLVEI 631


>gi|153805904|ref|ZP_01958572.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185]
 gi|149130581|gb|EDM21787.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185]
          Length = 508

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/503 (20%), Positives = 191/503 (37%), Gaps = 51/503 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T       +L NF+++    L G     +F   I P    +R+    +       E+   
Sbjct: 18  TLKMEGVQNLYNFLFEACNILRGPVSQDNFKDYITPILYFKRISDVYDEETQTALEE--- 74

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117
             G + +  S  +   +   +   +S     S N    +   +        D    +   
Sbjct: 75  -SGGDEEYASLPEQHRFVIPDGCHWSDIRERSENLGAAIVGAMRGIELANPDTLYGVLSM 133

Query: 118 FDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F       +     G +  + ++ S   L  +  P  +M + YE L+++F  +    A +
Sbjct: 134 FSAQKWTDKKNLSDGKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGE 193

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   +L           P    T+YDP CG+GG L +A+ H+     +H  
Sbjct: 194 FYTPRSVVSLLVRIL----------DPKPGETVYDPACGSGGMLIEAVQHM-----NHSS 238

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RF 292
                  GQE      A+    + +             NI QG TL            +F
Sbjct: 239 LCCGSIFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRSPKILQNGEIAKF 291

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  +          E  + + GR   G P  S G   ++ H+   +    +G
Sbjct: 292 DCVIANPPFSLEKWGSV-----EWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASG 343

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+V+    LF    G+ E  IR  L+++DL+EA+V L   LF+ T ++    IL  
Sbjct: 344 NGRMAVVMPQGVLFR---GNEEGRIREKLVKSDLVEAVVTLGDKLFYGTPLSPCFLILRR 400

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            K      +V +I+     T I    + + I++ +   ++ ++Y + E+   FS+++   
Sbjct: 401 LKPAAHSARVLMID----GTKILTVKRAQNILSPEDVNRLYELYTNYEDVEDFSKVVTLD 456

Query: 472 TFGYRRIKVLRPLRMSFILDKTG 494
               +   +     + +  ++  
Sbjct: 457 DIAAKDYDLSPNKYVEYHKEEIR 479


>gi|255690135|ref|ZP_05413810.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260624419|gb|EEX47290.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 497

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 205/538 (38%), Gaps = 63/538 (11%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETEEA 60

Query: 56  R------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  ++Y +      +   FV   G  +    E     LG+       +  IA   D
Sbjct: 61  LISSGGDKEYASL----PEQHRFVIPDGCHWQEVRE-RTENLGAAIVGAMRQIEIA-NPD 114

Query: 110 NAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               +   F       + +     +  + ++ S  +L     P  +M + YE L+++F  
Sbjct: 115 TLYGVLSMFSSQKWTNKAILNDSKIRDLIEHLSKRKLGNKDYPADLMGDAYEILLKKFAD 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ ++ 
Sbjct: 175 DSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIRYM- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               H          GQE      A+    + +             N+ QG TL      
Sbjct: 224 ----HDDSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDPKIL 272

Query: 289 GK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF  +          E  + +  R   G P  S G   ++ H+  
Sbjct: 273 QGGNIAKFDCVIANPPFSLENWGAT-----EWSSDKYKRNIYGTPSDSCGDYAWIQHMIC 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    +G GR A+V+    LF    G+ E+EIR+ L+E++LIEA+V L   LF+ T ++
Sbjct: 328 SM---SSGKGRMAVVMPQGILFR---GNQEAEIRKQLVESNLIEAVVTLGDKLFYGTGLS 381

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
               I+   K     G++ +I+ + + T    + + + I+ ++   ++  +Y +  +   
Sbjct: 382 PCFLIIRRMKQAHHSGRILMIDGSQILT----QKRAQNILEENDIDRLYSLYQNYSDEED 437

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR---LEADITWRKLSPLHQSFWLDI 518
           +SR++  +    +   +     + +  ++         E    +  +  L   F L I
Sbjct: 438 YSRIVTLQEIRDKEYNLSPNRYVVYHKEEIRPYAEVLAEFKQAYEDVKRLENEFSLLI 495


>gi|284055706|pdb|3KHK|A Chain A, Crystal Structure Of Type-I Restriction-Modification
           System Methylation Subunit (Mm_0429) From
           Methanosarchina Mazei.
 gi|284055707|pdb|3KHK|B Chain B, Crystal Structure Of Type-I Restriction-Modification
           System Methylation Subunit (Mm_0429) From
           Methanosarchina Mazei
          Length = 544

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 180/514 (35%), Gaps = 85/514 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              L N +W+ A+ L  +    ++  V+L    L+ +  A E  +  + E +        
Sbjct: 10  LNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNI 69

Query: 66  ------NIDLESFVKVA-------------GYSFYNTSEYSLSTLGSTNTR--------- 97
                 + D +   + A                F+       + L    T          
Sbjct: 70  YYLPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQD 129

Query: 98  ---------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                          +N    I   +   K I          A      +      +F+ 
Sbjct: 130 EQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQLDADKLIGLINEFSLTSFNN 189

Query: 143 IELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            E + + +      ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 190 PEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG--- 246

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAV 254
                    +YDP  G+GGF   +   +    +       +    +  +GQE  P T  +
Sbjct: 247 --------RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL 298

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVE 313
               M+IR +      D +   +   +   D     R  + ++NPPF  K W  +K A +
Sbjct: 299 AAMNMVIRGI------DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADD 352

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                   G      P   + +  +++H+   L       G  A++L++  +      + 
Sbjct: 353 PRWTINTNGEKRILTPPTGNANFAWMLHMLYHL----APTGSMALLLANGSM--SSNTNN 406

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINAT 428
           E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K       +RRG+V  I+A 
Sbjct: 407 EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVLFIDAR 466

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            L      + +  R   D+  +++ D + + +  
Sbjct: 467 KLGYM---KDRVLRDFKDEDIQKLADTFHNWQQE 497


>gi|189501455|ref|YP_001960925.1| type I restriction-modification system, M subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189496896|gb|ACE05444.1| type I restriction-modification system, M subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 527

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 199/554 (35%), Gaps = 73/554 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------- 59
              + +  W   +   G      +   IL    L+ +    +      +++Y        
Sbjct: 7   QKDINSAAWSACDTFRGVVDPAQYKDYILVMLFLKYISDVWQDHYEEYQKQYGDDDIRIR 66

Query: 60  --------------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                         L         E+ +     ++Y+  E   +          L+    
Sbjct: 67  RKLERERFVLPVVKLTEKNDETGEEAVLDEFPATYYSLYERRSAANIGELINIVLDHIED 126

Query: 106 SFSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYE 160
           S     + +F + DF+S        ++   L ++ ++F    + + P  V + V+ N Y 
Sbjct: 127 SNKVKLEGVFRNIDFNSEANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGNTYI 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI RF S+  + A +F TP  V  L   L            P     + DP CG+GG L
Sbjct: 187 YLIERFASDSGKKAGEFFTPFKVSELVAKLA----------DPRPGDRICDPACGSGGLL 236

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A   V D              GQE    T A+C   M +   +S     +       S
Sbjct: 237 IKAAKEVGDRN--------FALFGQESNGSTWALCRMNMFLHSFDS---ARIEWCDTLNS 285

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            L  +     +F+  ++NPPF       ++A     ++ +  RF  G+P  S G   F+ 
Sbjct: 286 PLLVENDRLMKFNCVVANPPFSLDKWGAENA-----ESDQYNRFWRGVPPKSKGDWSFIS 340

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+    E+     GR A+V+    LF G A   E  IR+ ++E +L++A++ LP +LF  
Sbjct: 341 HMV---EIALEKEGRVAVVVPHGVLFRGAA---EGRIRQKMIEENLLDAVIGLPGNLFQT 394

Query: 401 TNIATYLWILSNRKTEERRG---------KVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           TNI   + +    +    +           V  ++A+  + S +N    +  ++D+Q  +
Sbjct: 395 TNIPVAILVFDRSREGTTKDTKSTKGENRDVLFVDASREFVSGKN----QNTLSDEQIAK 450

Query: 452 ILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+  Y  R E  K++ + D          +  P  +    ++  +           L   
Sbjct: 451 IMRTYRERTEVEKYAHVADVAEIKENDFNLNIPRYVDTFEEEEEIDIDAVQEEIDNLEKE 510

Query: 511 HQSFWLDILKPMMQ 524
                  + + + Q
Sbjct: 511 LVEVRKQMAEKLQQ 524


>gi|323340759|ref|ZP_08081011.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091882|gb|EFZ34502.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 556

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 110/555 (19%), Positives = 208/555 (37%), Gaps = 67/555 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------------ 54
           +A  + N IW  A +L G+   +++   IL F   R L       +S             
Sbjct: 3   TAEDIKNKIWAMANELRGNMDASEYRDYILGFMFYRFLSEHQLNWQSENEFPDLAGKKLE 62

Query: 55  -VREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTL-----GSTNTRNNLESYIASF 107
            + ++Y      +   E    +A    Y    +++  ++       +   +  +     F
Sbjct: 63  KINQRYAKEAIGDDLTEYLKDIADALGYAIEPKFTWISIVERVNDRSFAPSEFQEMFDKF 122

Query: 108 SDNAK----------AIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRV 154
           ++NAK           +F D +  ++        +A  L  I    + IE + D     +
Sbjct: 123 ANNAKLNPNAVNDFTGVFSDINLGNSRLGDSTNVRAKTLLDIVNLVNEIE-YKDEAGHDI 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + +IYE+LI  F     +   +F TP  V  +   ++    D   +        +YD  C
Sbjct: 182 LGDIYEYLIAEFAGNAGKKGGEFFTPHQVSLVLAKIIAANMDPEIEHP-----EVYDFAC 236

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L    + +   GS  +    +  +GQEL    + +    +++  ++       + 
Sbjct: 237 GSGSLLLTVEDELQIPGSQKR--RRVRYYGQELNTTNYNMARMNLMMHGVDYQMMDLRNA 294

Query: 275 NIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +  +                 F   ++NPP+  +W+   + ++             GL  
Sbjct: 295 DTLENDWPDGVGNDNIDHPHFFDAVVANPPYSSRWDNSANKIKDARFKD------YGLAP 348

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            +     FL+H    L    N  G  AIVL    LF G A   E +IR+ LLE + I+AI
Sbjct: 349 KTKADYAFLLHGLYHL----NSRGTMAIVLPHGVLFRGNA---EGKIRKALLEKNQIDAI 401

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  LFF T I T + +L   KT +    V  I+A+        + KK+  + ++   
Sbjct: 402 IGLPAGLFFSTGIPTIIMVLKKNKTNK---DVLFIDAS--GEDHYEKIKKQNFLREEDIN 456

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWR 505
            I+D Y  RE+  K++ +            + + R +          L  L  +I  T +
Sbjct: 457 LIIDTYKKREDVDKYAHVASIDEIKENDYNLNIPRYVDTFEEEPPIDLGELTQEISQTDQ 516

Query: 506 KLSPLHQSFWLDILK 520
           +++   Q+    + +
Sbjct: 517 EIAESEQNLLSMMKE 531


>gi|253569550|ref|ZP_04846960.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841569|gb|EES69650.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 512

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/492 (20%), Positives = 182/492 (36%), Gaps = 50/492 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           S   L +F+W  A  L G      + + I P    +R+    +      V E  + +  +
Sbjct: 16  SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGYVCEGGIEYANA 75

Query: 66  NIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                      G  + +  E +       +    +    N  E          + IF   
Sbjct: 76  QAQELVIRIPDGAHWRDVRECTENVGQRLVEAFIAIEQANPGEHADGRVIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPD-HIITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++ +   G   +   
Sbjct: 195 TNRTVVDLMAEIL----------QPRPGESIYDPTCGSGGMLVKCLDFLRKKG---EPWQ 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +   GQE+   T A+    + +  +E         +I +  TL+   F      ++F  
Sbjct: 242 GVKVFGQEINALTSAIARMNLYLNGVED-------FSIVREDTLAHPAFVDGSRLRKFDI 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPP+  K    +        N + GR   G P        F  H+   ++   +  G
Sbjct: 295 VLANPPYSIKTWNREA-----FMNDKWGRNFLGTPPQGRADYAFFQHILASMD---DKTG 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+     LF       E  +R  L+++D++E ++ L  +LF+ + +   + I +N+K
Sbjct: 347 RCAILFPHGVLFRDE----EQSLREKLIKSDVVECVIGLGANLFYNSPMEACILICNNQK 402

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTF 473
               + K+  INA    T    E    ++       +I+  Y  + E   FS +      
Sbjct: 403 RSTLKNKIIFINALKEVTRKNAESYLEKV----HIEKIVSAYFNASEIQNFSTVASLEQI 458

Query: 474 GYRRIKVLRPLR 485
                 +   L 
Sbjct: 459 ANYNYNLNISLY 470


>gi|327404778|ref|YP_004345616.1| adenine-specific DNA-methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327320286|gb|AEA44778.1| Site-specific DNA-methyltransferase (adenine-specific) [Fluviicola
           taffensis DSM 16823]
          Length = 521

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/560 (18%), Positives = 214/560 (38%), Gaps = 72/560 (12%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M + T  +  S+   +W +A  L G  + +++  V+L    L+      E  R  +  + 
Sbjct: 1   MAKQTAKNTKSIEETLWDSANKLRGTVESSEYKHVVLALIFLKFTSDKFEERRQELVAEG 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAK 112
                  +++  F       F+   E   S + +   +N++          +   + + K
Sbjct: 61  ---KDKYLEMPEFYN-MKNVFFLAEESRWSYIIANAKQNDISLKIDTALHTVEKNNASLK 116

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               D  FS     + K   L     N   +          ++  +YE+ + +F     +
Sbjct: 117 GALPDNYFSRLNMDVSKLAALLDTINNIDTL----KDKQQDIVGRVYEYFLSKFALAEGK 172

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP+ +V+L   ++                 +YDP CG+GG    +M  +    S
Sbjct: 173 GKGEFYTPKSIVNLIAEMIEPYKG-----------VIYDPACGSGGMFVQSMKFIQ---S 218

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           HH     +  +GQE    T+ +    + IR + +      +       T +KD     + 
Sbjct: 219 HHGNTKDISIYGQEYTNTTYKLAKMNLAIRGISA------NLGAVAADTFAKDQHPDLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF +K  +  D +  + +       G  LP  S+ +  +++++A+KL    + 
Sbjct: 273 DFIMANPPFNQKDWRASDELTDDPRWK-----GYDLPPTSNANYAWILNMASKL----SE 323

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  +L++  L     G  E +IR+ L+EN ++EA+V LP  +F+ T+I+  LWIL+N
Sbjct: 324 NGVAGFILANGAL---SGGGEEYKIRKKLIENGVVEAVVILPRSMFYTTDISVTLWILNN 380

Query: 413 RKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            KTE              R+ ++  ++  ++        KK    ++D  ++I   Y + 
Sbjct: 381 NKTERVVKHPDETRNYRNRKDEILFMDLREIGEPF---EKKFTQFSEDHIKEIAGTYHTW 437

Query: 460 E--------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           +          ++           +   ++    + F+     +   +   + +      
Sbjct: 438 QQKNSNYKDIPEYCYSATLENVKSKDYSLVPSKYIEFVNRDENIDFDDKMKSLQAEFTEL 497

Query: 512 QSFWLDILKPMMQQIYPYGW 531
                   K +M      G+
Sbjct: 498 LKAEESSKKDLMNVFKELGY 517


>gi|35381318|gb|AAQ84546.1| type I restriction-modification enzyme subunit M [Klebsiella
           pneumoniae]
          Length = 877

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/530 (20%), Positives = 202/530 (38%), Gaps = 71/530 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +    +    A+ E  +  G S 
Sbjct: 60  KKNELYSCLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKAKGNPYAMIE--VPEGASF 117

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            D+ +                    G+      +   I   ++  + K + +  DF+   
Sbjct: 118 DDMVALK------------------GNKEIGEKINKTIRLLAEANDLKGVIDIADFNDED 159

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  + V  D ++ + YE+L+R F +E  +    F TP
Sbjct: 160 KLGKGKEMIDRLSKLVAIFEGLDLSANRVDGDDLLGDAYEYLMRHFATESGKSKGQFYTP 219

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++         +      T+YDPTCG+G  L  A +           P  L
Sbjct: 220 AEVSRILAKVI------GISKETPQDATVYDPTCGSGSLLLKASDEAG--------PKGL 265

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299
             +GQE++  T A+    M++     +    + K         KD     K F + ++NP
Sbjct: 266 TIYGQEMDYATSALARMNMILHD---NATAKIWKGNTLADPHWKDGNDNLKTFDFAVANP 322

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K          +  N    RF  G P   +G   FL+H+   L+      G+ A++
Sbjct: 323 PFSNKNWTSGL----DAANDTFDRFVWGTPPEKNGDYAFLLHIIKSLK----STGKGAVI 374

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--- 416
           L    LF G A   E+ IR  LL+   I+ I+ LP +LF+ T I   + ++     +   
Sbjct: 375 LPHGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIVIDKEDAQLRA 431

Query: 417 -----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDY 470
                E +  + +I+A+  +    N+ +    +      +I+D +   +E  +FSRM+  
Sbjct: 432 FNANGESQQGIFMIDASKGFIKDGNKNR----LRAQDIHKIVDAFNREQEIPRFSRMVPL 487

Query: 471 RTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
                    + + R +  S   D   L   L   I    +  L   + + 
Sbjct: 488 SEIAANDFNLNIPRYIDSSDPEDLHDLSGHLAGGIPDHDIDALSAYWNIF 537


>gi|163803500|ref|ZP_02197371.1| N-6 DNA methylase [Vibrio sp. AND4]
 gi|159172718|gb|EDP57568.1| N-6 DNA methylase [Vibrio sp. AND4]
          Length = 573

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/514 (19%), Positives = 183/514 (35%), Gaps = 92/514 (17%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L + +W  AE L        +   +L    ++ +  A +  +  ++           
Sbjct: 9   LKELESKLWTAAEKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADLANPDHEYY 68

Query: 57  -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------------ 97
                  E+ LA   +N             F+  +E     L     R            
Sbjct: 69  LDPADFSEEELAEEIANELEVRDFYTEKNVFWLPTESRWQFLQDNGPRVIGGADLEIDGP 128

Query: 98  -----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--------CKNFSGIE 144
                    + +    DNA    E  + +     L K+    KI            + I 
Sbjct: 129 NQSKVTKKITSVGHLIDNALEGIERENPTKLKGALNKSYSSLKIDQAKLNELINLIATIP 188

Query: 145 L-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             H D     ++ ++YE+++ +F     +    F TP  +V L   ++   +        
Sbjct: 189 FVHADLNSKDILGHVYEYMLGQFALAEGKRGGAFYTPASIVSLIVEMIEPFEG------- 241

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAG 258
                +YDP  G+GGF   +   +    +  ++ P+     +  +GQE    T  +    
Sbjct: 242 ----RVYDPAMGSGGFFVQSEKFIERRANQKEVDPLTQKQKISIYGQEYNHTTWQLAAMN 297

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M IR L+ D         +  ST +       R  + ++NPPF  K             +
Sbjct: 298 MAIRGLDYD------FGKEPASTYTNVQHPDLRADFIMANPPFNMKEWNTG-------VD 344

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G P   + +  ++ H+   L       G  A++L++  +    + + E EIR
Sbjct: 345 DNDPRWIYGNPPSGNANFAWMQHMLYHL----APDGSQALLLANGSM--SSSTNNEGEIR 398

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINAT 428
             L+ENDL+E +VALP  LF  T I   +W L+  KT           +R+G+V  I+A 
Sbjct: 399 ASLIENDLVECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRDRKGEVLFIDAR 458

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +L      + +  R    D  +++ D+Y + + G
Sbjct: 459 NLGYM---KDRVLRDFTRDDIQKVADLYHAWKTG 489


>gi|256841216|ref|ZP_05546723.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
 gi|256737059|gb|EEU50386.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
          Length = 496

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 110/538 (20%), Positives = 206/538 (38%), Gaps = 64/538 (11%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETEEA 60

Query: 56  R------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  ++Y +      +   FV   G  +    E     LG+       +  IA   D
Sbjct: 61  LISSGGDKEYASL----PEQHRFVIPDGCHWQEVRE-RTENLGAAIVGAMRQIEIA-NPD 114

Query: 110 NAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               +   F       + +     +  + ++ S  EL     P  +M + YE L+++F  
Sbjct: 115 TLYGVLSMFSSQKWTNKAILNDSKIRDLIEHLSKRELGNKDYPADLMGDAYEILLKKFAD 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ ++ 
Sbjct: 175 DSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETIYDPACGSGGMLIEAIRYM- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               H          GQE      A+    + +             N+ QG TL      
Sbjct: 224 ----HDDFLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDPKIL 272

Query: 289 GK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF  +          E  + +  R   G P  S G   ++ H+  
Sbjct: 273 QGGNIAKFDCVIANPPFSLENWGAT-----EWSSDKYKRNIYGTPSDSCGDYAWIQHMIC 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    +G GR A+V+    LF  +    E+EIR+ L+E+DLIEA+V L   LF+ T ++
Sbjct: 328 SM---VSGQGRMAVVMPQGILFRNQ----ETEIRKQLVESDLIEAVVTLGDKLFYGTGLS 380

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
               I+   K     G++ +I+ + + T    + + + I+ ++   ++  +Y +  +   
Sbjct: 381 PCFLIIRRMKPAHHFGRILMIDGSKILT----QKRAQNILEENDIDRLYSLYQNYSDEED 436

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR---LEADITWRKLSPLHQSFWLDI 518
           +SR++  +    +   +     + +  ++         E    + ++  L + F L I
Sbjct: 437 YSRIVTLQEIRDKEYNLSPNRYVVYHKEEIRPYAEVLAEFKHAYEEVKRLEEEFSLLI 494


>gi|21226531|ref|NP_632453.1| type I restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
 gi|20904801|gb|AAM30125.1| type I restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
          Length = 576

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 180/514 (35%), Gaps = 85/514 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              L N +W+ A+ L  +    ++  V+L    L+ +  A E  +  + E +        
Sbjct: 9   LNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNI 68

Query: 66  ------NIDLESFVKVA-------------GYSFYNTSEYSLSTLGSTNTR--------- 97
                 + D +   + A                F+       + L    T          
Sbjct: 69  YYLPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQD 128

Query: 98  ---------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                          +N    I   +   K I          A      +      +F+ 
Sbjct: 129 EQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQLDADKLIGLINEFSLTSFNN 188

Query: 143 IELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            E + + +      ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 189 PEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG--- 245

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAV 254
                    +YDP  G+GGF   +   +    +       +    +  +GQE  P T  +
Sbjct: 246 --------RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL 297

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVE 313
               M+IR +      D +   +   +   D     R  + ++NPPF  K W  +K A +
Sbjct: 298 AAMNMVIRGI------DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADD 351

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                   G      P   + +  +++H+   L       G  A++L++  +      + 
Sbjct: 352 PRWTINTNGEKRILTPPTGNANFAWMLHMLYHL----APTGSMALLLANGSM--SSNTNN 405

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINAT 428
           E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K       +RRG+V  I+A 
Sbjct: 406 EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVLFIDAR 465

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            L      + +  R   D+  +++ D + + +  
Sbjct: 466 KLGYM---KDRVLRDFKDEDIQKLADTFHNWQQE 496


>gi|218263901|ref|ZP_03477849.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222412|gb|EEC95062.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii
           DSM 18315]
          Length = 497

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 105/511 (20%), Positives = 198/511 (38%), Gaps = 60/511 (11%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETEEA 60

Query: 56  R------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  ++Y +      +   FV   G  +    E     LG+       +  IA   D
Sbjct: 61  LISSGGDKEYASL----PEQHRFVIPDGCHWQEVRE-RTENLGAAIVGAMRQIEIA-NPD 114

Query: 110 NAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               +   F       + +     +  + ++ S  +L     P  +M + YE L+++F  
Sbjct: 115 TLYGVLSMFSSQKWTNKAILNDSKIRDLIEHLSRRKLGNKDYPADLMGDAYEILLKKFAD 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ ++ 
Sbjct: 175 DSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIRYM- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               H          GQE      A+    + +             N+ QG TL      
Sbjct: 224 ----HDDSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDPKIL 272

Query: 289 GK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF  +          E  + +  R   G P  S G   ++ H+  
Sbjct: 273 QGGNIAKFDCVIANPPFSLENWGAT-----EWSSDKYKRNIYGTPSDSCGDYAWIQHMIC 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    +G GR A+V+    LF    G+ E+EIR+ L+E+DLIEA+V L   LF+ T ++
Sbjct: 328 SM---SSGKGRMAVVMPQGILFR---GNQEAEIRKQLVESDLIEAVVTLGDKLFYGTGLS 381

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
               I+   K     G++ +I+ + + T    + + + I+ ++   ++  +Y +  +   
Sbjct: 382 PCFLIIRRMKQAHHSGRILMIDGSKILT----QKRAQNILEENDIDRLYSLYQNYSDEED 437

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +SR++  +    +   +     + +  ++  
Sbjct: 438 YSRIVTLQEIRDKEYNLSPNRYVVYHKEEIR 468


>gi|261840207|gb|ACX99972.1| type I R-M system M protein [Helicobacter pylori 52]
          Length = 817

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 134/643 (20%), Positives = 250/643 (38%), Gaps = 75/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L N +W  A+ L G    +++   +L    L+ +                    + 
Sbjct: 4   KKSELYNSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDK-----------------AR 46

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            + +S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+   
Sbjct: 47  NNTDSEIEVPKGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++             +       + +    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSADADIAKGGSSTLSNPLFTTENGMLKTFDYVVANPP 269

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 270 FSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGA 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 326 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 382

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 383 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 437

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 438 DYNLNIARYIAAKPESEKDLFALINSHKASYLPKNEIKAYAPYFRVFKELKNTLFKKSDK 497

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRADPVTDVNGEW 581
           E +     +    K L  ++S  ++F  + +NAF R +         P  +P T +  E 
Sbjct: 498 EGYYALKTECENIKDLITQSSEFQAFHASVLNAFDRLNLFETFDNLKPGFNPKTLI--ES 555

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 556 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 598


>gi|258593067|emb|CBE69378.1| N-6 DNA methylase [NC10 bacterium 'Dutch sediment']
          Length = 640

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 212/543 (39%), Gaps = 53/543 (9%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG---- 64
            S+   +WK A  + G+     F   ILP   ++RL    E   + + E Y         
Sbjct: 123 KSMEGLLWKAACSIRGEKDAPKFKDYILPLVFIKRLSDVFEDEMAGLTETYEGNEERART 182

Query: 65  ---SNIDLESFVKVAGYSFYNTS-----EYSLSTLGSTNTRNNLES--YIASFSDNAKAI 114
              ++  +  F      ++   S     E+       T       +   IA  + + + +
Sbjct: 183 VLEADHGVVRFYIPPQATWPVVSSRQMFEWPEGKRPKTLGEQLTTTVRAIARLNPSLQGV 242

Query: 115 FEDFDFS--STIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +  D++      R    G L ++ +  S     +    V    +   YE+L+R+F    
Sbjct: 243 IDIVDYNEIRNGEREISDGALSRLIELLSDPRYRMGLHDVEPDFLGRAYEYLLRKFAEGQ 302

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP++V  L   L+           P     + DP CG+GG L      +   
Sbjct: 303 GQSAGEFFTPKEVGWLIAYLM----------RPKQGEEVNDPCCGSGGLLIKCELVLK-- 350

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G   +I   L  +GQEL   + A+    M++  +E +  R         +    D  + +
Sbjct: 351 GQEEEIARPLRLYGQELTGSSFAIARMNMVLHDMEGEIVR----GNSMANPKFLDGSSLR 406

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NP + +    + D    E+   E      G    S     +L H+   L    
Sbjct: 407 RFDIVVTNPMWNQD---NFDPASYENDPFERFVERGGFAPASSADWAWLQHVHASL---- 459

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           N  GRAA+V+ +     G    GE++   IRRW ++ D IE ++ LP +LF+ T  A  +
Sbjct: 460 NDAGRAAVVIDTGAASRGSGSQGENKEKTIRRWFVDRDAIEGVILLPDNLFYNTTAAGII 519

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            +L+ +K + R+G+V LINA+  +   R +      I D   ++I + + + ++  +F +
Sbjct: 520 ILLNRQKAKGRQGRVILINASTEFEKGRPK----NFIPDASVKKIAEAFHAGKDVERFVK 575

Query: 467 MLDYRTFGYRRIKV--LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +            +   R +  +   +   +  +  D++  KL    +    ++ +  + 
Sbjct: 576 VASIEEIAKNDYNLSPSRYIETTAPTEHRDIQTVLDDLS--KLDAEVKQLDSELKEIFIG 633

Query: 525 QIY 527
             Y
Sbjct: 634 LGY 636


>gi|255690134|ref|ZP_05413809.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260624418|gb|EEX47289.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 507

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 204/529 (38%), Gaps = 50/529 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            ++        G  + +  E +       +    +    N  +          + IF   
Sbjct: 76  QVEDLPIRIPDGAHWRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++    +   + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPDNIITS-LIEDFSKYTLSLKVCPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+      
Sbjct: 195 TNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEW---Q 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +   GQE+   T ++    + +  +E         +I    TL    F      ++F  
Sbjct: 242 SVQVFGQEVNGLTSSIARMNLYLNGIED-------FSIACADTLENPAFLDGSHLRKFDI 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPP+  K    +        N + GR   G P        F+ H+   ++      G
Sbjct: 295 VLANPPYSIKEWNREK-----FMNDKWGRNFLGTPPQGRADYAFIQHILASMD---EKTG 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+L    L        E  +RR L+E DL+++++++  +LFF + +   + + S++K
Sbjct: 347 RCAILLPHGVLNRME----EEIMRRKLIEEDLVDSVISIGKNLFFNSPMEACIMLCSSKK 402

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
             +R  +V  I ATDL      E      + ++   +I+ +Y    N    S ++D +T 
Sbjct: 403 PSDRIKQVLFIRATDLVERKNGES----YLTEEHVEEIVSLYRGNTNVDNRSCIVDTKTI 458

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
                 +   L +     +  L   E    W++ S    S +  ++  +
Sbjct: 459 SQNEYSISPKLYVKQTQTENILKFSEQIEQWQEYSCNIHSEYTKLINLL 507


>gi|317181216|dbj|BAJ59002.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 821

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 133/643 (20%), Positives = 250/643 (38%), Gaps = 72/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            + +S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 51  NNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEKNDLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENART 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 --RIKVLRPL--RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +  +     D   L          K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIAAKQESQKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNTLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFG---------RKDPRADPVTDVNGEW 581
           E +     +    K L  ++S  ++F  + +NAF            +P  +P T +  E 
Sbjct: 501 EGYYALKTECENIKDLITQSSEFQAFHASVLNAFDRLNLFETFNHLEPGFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|253315161|ref|ZP_04838374.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
          Length = 446

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/488 (22%), Positives = 192/488 (39%), Gaps = 68/488 (13%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGSNIDLE-------SFVKVA 76
           +   ++F   IL     R L    E     A+  + + +  +  D E         +   
Sbjct: 1   NMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQV 60

Query: 77  GYSF------------YNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST 123
           GY                T ++ +  L +T  R    S +   S+N    +F D D SST
Sbjct: 61  GYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSST 119

Query: 124 ---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP
Sbjct: 120 RLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + V  +   ++ D  D L        R +YDPTCG+G  L              K   + 
Sbjct: 180 QQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG----------KETQVY 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE    T+ +    ML+  +  +     +  I+   TL    F G  F   ++NPP
Sbjct: 222 RYFGQERNNTTYNLARMNMLLHDVRYE-----NFEIRNDDTLENPAFLGNTFDAVIANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +  KW  D      E  +G        L   S     F+ H+ + L    +  G  A+VL
Sbjct: 277 YSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVL 327

Query: 361 SSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
               LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++ 
Sbjct: 328 PHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQD 382

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRI 478
             V  I+A++ +   +N    +  ++D Q  +I+D Y  +    K+S     +       
Sbjct: 383 DNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKATIDKYSYSATLQEIADNDY 438

Query: 479 KVLRPLRM 486
            +  P  +
Sbjct: 439 NLNIPRYV 446


>gi|300869811|ref|YP_003784682.1| type-I restriction-modification system HsdM [Brachyspira pilosicoli
           95/1000]
 gi|300687510|gb|ADK30181.1| type-I restriction-modification system, HsdM [Brachyspira
           pilosicoli 95/1000]
          Length = 529

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/542 (20%), Positives = 205/542 (37%), Gaps = 78/542 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLAF 62
            L + IWK A+DL G     DF + +L     R +   L    +            Y   
Sbjct: 12  ELHSKIWKIADDLRGSVDGWDFKQYVLGMLFYRYISEHLANYLNQNEWDSGNKEFNYADL 71

Query: 63  GGSN-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---------NLESYIASFSDNAK 112
              +  D++S +      F   SE   +     N ++         NL   +     + +
Sbjct: 72  DDKDVEDVKSDIIKEQGFFIYPSELFENIRKEANNQDSKKDSKEKHNLNEKLQKIFKDIE 131

Query: 113 -------------AIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVM 155
                         +F+D D +S       +++   L K+    + IEL           
Sbjct: 132 NSAKGTKSETKIAGLFDDIDVNSNKLGPTVIKRNERLRKLINGIADIELGDFKDHSIDAF 191

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP++V  L T + +     +        + +YDP CG
Sbjct: 192 GDAYEYLMGMYASSAGKSGGEFFTPQEVSELLTKITITGKSEI--------KRVYDPACG 243

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D          +   GQE+   T+ +C   M +  +  +       +
Sbjct: 244 SGSLLLKFKRILKDE------EKKIHYFGQEINITTYNLCRINMFLHDIGFEK-----FD 292

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL++    + + F   +SNPP+  KWE + + +          R+ P   L   S
Sbjct: 293 IAHGDTLTEPKHLSDEPFDAIVSNPPYSIKWEGEDNTLLIND-----PRYSPAGILAPKS 347

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L+        AAIV     ++ G A   E +IR++L++N+ IE I+ 
Sbjct: 348 KADFAFILHSLSWLDTAAL----AAIVCFPGIMYRGGA---EQKIRKYLIDNNYIECIIQ 400

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T+IAT + +LS  K +    K   I+A++ +    N       ++D     I
Sbjct: 401 LPDNLFYGTSIATCIMVLSKSKIDS---KTLFIDASEDYEKATN----NNKLSDKNIEDI 453

Query: 453 LDIYVSREN-GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           L  + +RE+      +            + V   +      ++  +  L  D+    L  
Sbjct: 454 LSYFKARESKAHKCYLASKEEIEAQDYNLSVSTYVEQKDTREQVDIKVLNKDLEAIVLEE 513

Query: 510 LH 511
            +
Sbjct: 514 SN 515


>gi|297581881|ref|ZP_06943802.1| type I restriction enzyme M protein [Vibrio cholerae RC385]
 gi|297533975|gb|EFH72815.1| type I restriction enzyme M protein [Vibrio cholerae RC385]
          Length = 832

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 137/732 (18%), Positives = 267/732 (36%), Gaps = 118/732 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +                 +G S+
Sbjct: 4   KKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYVSD--------------KYGDSD 49

Query: 67  IDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                     G SF    +    S +G       ++  I + +  A++ F DF+  + + 
Sbjct: 50  DFAPPVTIPPGASFKDMVALKGKSDIGDKINTQIIQPLIDANTRLARSDFPDFNDPNKLG 109

Query: 126 -RLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                   L  +   F   EL         D ++ + YE+L+R F S+  +    F TP 
Sbjct: 110 EGQAMVDRLSNLIGIFQKPELDFSKNRAENDDILGDAYEYLMRHFASQSGKSKGQFYTPS 169

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  +   ++      +   +     T YDPTCG+G  L       A+ G H      + 
Sbjct: 170 EVSRIMAKVV-----GISPANAVASTTAYDPTCGSGSLLLKVA---AEAGKH------IT 215

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---------KRF 292
             GQE++  T  +    M++           + NI QG+TL+   F           + +
Sbjct: 216 LEGQEMDVTTAGLARMNMILHDF-------PTANILQGNTLASPKFKDGRKDGTEVLRTY 268

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y ++NPPF  K             +    RF  G P    G   +L+H+   ++     
Sbjct: 269 DYVVANPPFSDKTWSTGLT----PASDAHQRFAWGEPPKKQGDYAYLLHIIRSMK----S 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+ A +L    LF G A   E+ IR  L+ + +++ I+ LP++LF+ TNIA  + +L  
Sbjct: 321 TGKGACILPHGVLFRGNA---EAVIREKLVRSGILKGIIGLPSNLFYGTNIAACILVLDK 377

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRML--- 468
                R+G + +I+A+  +         +  + +    +I+D +    E  ++SRM+   
Sbjct: 378 ENASARKG-IFMIDASKGFIK----DGAKNRLREQDIHKIVDAFTKLAELPRYSRMVPLT 432

Query: 469 -------DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT-----WRKL--------S 508
                  DY     R I  + P  +  I         E D+      W+++         
Sbjct: 433 EISDPKNDYDLKLSRYIDNIEPEDIQDIDGHLRGGIPERDLDALGDYWKEIPCVRNALFE 492

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              ++ +  +  P+ +          F   +  + +      +AS   +  F      K 
Sbjct: 493 SAGRTGYAQLKLPIAEVKSTIFAHPEFTAFNQAATQVFADWKQASIPQLKGFAQNGHPKQ 552

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQD-------YFV-----------REVSPH 610
                  D+   + P   +  Y+   +L            Y +           REV   
Sbjct: 553 LIEALSEDLLARFKPTPLVNAYDVYQHLMDYWAETMQDDCYLIADAGWKAGAQPREVVK- 611

Query: 611 VPDA-----YIDKIFIDEKDKEIGR---VGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           + DA     +  + F   K K   +   +   I   R+F        +++++A+L  +E 
Sbjct: 612 IKDANGKLVWPKEPFDYTKSKRRFKSDLIPASILIARYF--NAEQDAIEELEAKLADIEQ 669

Query: 663 QIATLLEEMATE 674
           ++  ++EE + E
Sbjct: 670 RLLEMMEENSGE 681


>gi|73748045|ref|YP_307284.1| putative type I restriction-modification system methylation subunit
           [Dehalococcoides sp. CBDB1]
 gi|73659761|emb|CAI82368.1| putative type I restriction-modification system methylation subunit
           [Dehalococcoides sp. CBDB1]
          Length = 645

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/525 (21%), Positives = 210/525 (40%), Gaps = 46/525 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           + A L  F+ K A  L G+  H++F   +      +R+     E  R    +        
Sbjct: 14  TQAELDAFLEKAANILRGNVDHSEFRGYVFALLFFKRISDVYIEEVRKLTAQLGDETLAK 73

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFSSTI 124
           +  + +FV   G  +   +  S + +G+T     + +   +       I     DF+   
Sbjct: 74  DPKMHNFVVPDGSLWDIAARQSRNQVGTT-LNEAMIAIERANQPKFDGILTSGVDFNDA- 131

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +L +  L+  +  +FS        V D V+ N YE+LIR F S   + + +F TP++V 
Sbjct: 132 EKLPRDKLI-NLINHFSSQIFDRAHVTDDVLGNAYEYLIRNFASRAGKSSGEFYTPKEVA 190

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           +L + ++           P   +++ D   G+GG L    N+V       K P  L+ + 
Sbjct: 191 YLMSEIV----------EPQPGQSICDWASGSGGLLLQCRNYVTR---QCKDPDRLLLYA 237

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    M++  ++S   R   ++  +      D     +F   + NPPF  +
Sbjct: 238 QESNLSTYNISRINMILHGVKSWEHR--HQDSLRNPLHVDDGKKLLKFDRIVMNPPFSLE 295

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                   +        GRFG G+P  ++G   +L H+   L+      G+A +V+S   
Sbjct: 296 DWG----YDDFQGGDPFGRFGYGMPPRNNGDYAWLEHVLKSLK----DTGKAIVVMSQGV 347

Query: 365 LFNGR------------AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           LF G+            +   E  IR   ++ D IE ++ LP+ LF+   +   L I++ 
Sbjct: 348 LFRGQPEQTEEDDGRNQSADAEYVIREGFIKADAIECVIVLPSKLFYGNTVPGCLIIMNK 407

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS-RMLDY- 470
            K  ER+ K+ +I A+  + +       + I+      +IL  + +  +   + R++   
Sbjct: 408 NKPPERKNKILMIWASRNFQN----ANPQNILRPSDLMRILVPWRAFGDLDLARRLVSIH 463

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                +  ++ R  R+  I D         +    +LS L  S W
Sbjct: 464 EEKLVQEEELERQRRLKDIEDAYAPILEPLETLTLELSRLETSNW 508


>gi|300727763|ref|ZP_07061147.1| type I restriction-modification system, M subunit [Prevotella
           bryantii B14]
 gi|299774973|gb|EFI71581.1| type I restriction-modification system, M subunit [Prevotella
           bryantii B14]
          Length = 511

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/518 (21%), Positives = 197/518 (38%), Gaps = 56/518 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L NF+++    + G     +F   I P    +R+    +    A  E+     G +++
Sbjct: 28  QNLYNFLFEACNIIRGPVSQDNFKDYITPILYYKRISDVYDEETEAALEE----SGGDME 83

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTI 124
             +  +   +   +   +      S N    +   +        D    +   F      
Sbjct: 84  YATLPEQHRFVIPDGCHWKDVRERSENLGAAIVGAMRGIELANPDTLYGVLSMFSAQKWT 143

Query: 125 ARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +     G +  + ++ S  +L  +  P  +M + YE L+++F  +    A +F TPR V
Sbjct: 144 DKKNLSDGKIRDLIEHLSTRKLGNNDYPTDLMGDAYEILLKKFADDSKAKAGEFYTPRSV 203

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   +L           P    ++YDP CG+GG L +A++H+     +H         
Sbjct: 204 VQLLVRIL----------DPQPGESVYDPACGSGGMLIEAVHHM-----NHSNLCCGNIF 248

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNP 299
           GQE      A+    + +             NI QG TL            +F   ++NP
Sbjct: 249 GQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRNPKILQGGEVAKFDCVIANP 301

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K          E  + + GR   G P  S G   ++ H+   +     G GR A+V
Sbjct: 302 PFSLKKWGSV-----EWSSDKYGRNIWGTPSDSCGDYAWIQHMIASM---APGKGRMAVV 353

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF    G  E  IR  L+++D++EA+V L   LF+ T ++    I+   K     
Sbjct: 354 MPQGVLFR---GKEEGHIREKLVKSDMVEAVVTLGDKLFYGTGLSPCFLIIRKMKPAAHS 410

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRI 478
            ++ +I+ T + T  R     + I+      ++ ++YV+ EN   FS+++       +  
Sbjct: 411 ARILMIDGTKILTPKRA----QNILEQKDVDRLFELYVNYENVEDFSQVVTLDDIAAKGY 466

Query: 479 -----KVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                K ++  R +       LA  +A     KL    
Sbjct: 467 DLSPNKYVQYHREAIKPYTEVLAEFKAAYEEVKLREAE 504


>gi|311064527|ref|YP_003971252.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
 gi|310866846|gb|ADP36215.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 855

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/650 (19%), Positives = 228/650 (35%), Gaps = 73/650 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L               E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMGDEDLEELR 61

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFED 117
             + +   +V+   GY     + +S            N R+ L ++  +     K +F  
Sbjct: 62  EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEAGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SREN 461
           I T + +L   + ++    V +++A+  +T       K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRDDDH---VLIVDASKYFTK----EGKNNKLRASDIKRIVDAVTGNRDV 448

Query: 462 GKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQ--SFWL 516
            KFSR++  D        + + R +  S   +   +   +   I  R +  L +  + + 
Sbjct: 449 DKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAESWDVYSTMFGGIPKRDIDALSKYWNVFP 508

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP----RAD 572
            + + +  +   +    +        N    +K    +            +       A+
Sbjct: 509 GLRRCLFAEENGHSAKLAVQDVREAVNADSDVKAYIQRYHEAFIDYPAYIRGELVGNAAN 568

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
                  E + +  L     +P    +  Y   +V     D++   I ID
Sbjct: 569 VSIAAEEETLTNDLLRRLAGIPL---VDAYAAYQVL---DDSWQKTISID 612


>gi|310287614|ref|YP_003938872.1| HsdM-like protein of Type I restriction-modification system
           [Bifidobacterium bifidum S17]
 gi|309251550|gb|ADO53298.1| HsdM-like protein of Type I restriction-modification system
           [Bifidobacterium bifidum S17]
          Length = 855

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/650 (19%), Positives = 228/650 (35%), Gaps = 73/650 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L               E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMGNEDLEELR 61

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFED 117
             + +   +V+   GY     + +S            N R+ L ++  +     K +F  
Sbjct: 62  EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEAGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SREN 461
           I T + +L   + ++    V +++A+  +T       K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRDDDH---VLIVDASKYFTK----EGKNNKLRASDIKRIVDAVTGNRDV 448

Query: 462 GKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQSFWLD- 517
            KFSR++  D        + + R +  S   +   +   +   I  R +  L + + +  
Sbjct: 449 DKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAESWDVYSTMFGGIPKRDIDALSKYWTVFP 508

Query: 518 -ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP----RAD 572
            + + +  +   +    +        N    +K    +            +       A+
Sbjct: 509 GLRRCLFAEENGHSAKLAVQDVREAVNADSDVKAYIQRYREAFIDYPAYMRGELVGNAAN 568

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
                  E + +  L     +P    +  Y   +V     D++   I ID
Sbjct: 569 VSIAAEEETLTNDLLRRLAGIPL---VDAYAAYQVL---DDSWQKTISID 612


>gi|229846817|ref|ZP_04466924.1| type I modification enzyme [Haemophilus influenzae 7P49H1]
 gi|229810306|gb|EEP46025.1| type I modification enzyme [Haemophilus influenzae 7P49H1]
          Length = 576

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/558 (16%), Positives = 192/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 41  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 100

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRN---------- 98
           L     + + E                A   F+  +      L   +  N          
Sbjct: 101 LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGK 160

Query: 99  ---------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    +    I   ++  K + +     +      +  ++     +F+    + + 
Sbjct: 161 FAGVARLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEP 220

Query: 150 V---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 221 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 270

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 271 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 326

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 327 D------FGKYNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 373

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  +L
Sbjct: 374 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKGIINANL 427

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 428 VECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 482

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I +   + +          F +             VL P R     ++       
Sbjct: 483 DDIAKIANTLHAWQKSDGYEDQAAFCKSTTLEEIKDNDF-VLTPGRYVGTAEQEDDGVPF 541

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 542 AEK-MQNLTALLKEQFAK 558


>gi|93005780|ref|YP_580217.1| type I restriction-modification system, M subunit [Psychrobacter
           cryohalolentis K5]
 gi|92393458|gb|ABE74733.1| type I restriction-modification system, M subunit [Psychrobacter
           cryohalolentis K5]
          Length = 809

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 107/540 (19%), Positives = 213/540 (39%), Gaps = 68/540 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               + + +W +  +L G    + +   +L    ++ +         A  +  +  GGS 
Sbjct: 4   KKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSDKY--KDDAFGDIVVPEGGSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSST- 123
            D+ +                    G       ++  IA  ++    + + +  DF+   
Sbjct: 62  DDMVALK------------------GDKEIGEKVDKIIAKLAEANGLRGVIDVADFNDEE 103

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGTGKEHVDRLSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++         ++  +  T+YDP CG+G  L    +         + P  L
Sbjct: 164 SEVSRILAKII------GVDDNTPLDATVYDPACGSGSLLLKVSD---------EAPRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE++  T A+    M++         D+ K     S    +    K F + ++NPP
Sbjct: 209 TIYGQEMDFATTALAKMNMILHG---ATGADIYKGNTLSSPHFVEGNQLKTFDFIVANPP 265

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K            ++ E  RF  G+P   +G   FL+H+   L+      G  A++L
Sbjct: 266 FSNKNWTSGL----NPESDEFDRFTWGIPPEKNGDYAFLLHIIKSLK----STGVGAVIL 317

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-R 419
               LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++     + R +
Sbjct: 318 PHGVLFRGNA---EAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVIDKNTAQSRAK 374

Query: 420 GK--VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF--G 474
           G   + +++A+  +    N+ +    +      +I+D++ S+ N   +SRM++       
Sbjct: 375 GDAGLFMVDASRGYMKDGNKNR----LRSQDIHKIVDVFNSQLNLTGYSRMVELDEIIDN 430

Query: 475 YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH--QSFWLDILKPMMQQIYPYGW 531
              + + R +  S   D+  L A L+  I    +  L        ++ K +  ++   G 
Sbjct: 431 DYNLNIPRYIDASIDEDQHDLTAHLKGGIPVADIDSLESYWQVLPNLRKTLFSELKHSGN 490


>gi|90411353|ref|ZP_01219365.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Photobacterium profundum 3TCK]
 gi|90327882|gb|EAS44213.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Photobacterium profundum 3TCK]
          Length = 567

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 183/528 (34%), Gaps = 87/528 (16%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +        L   +W  A+ L        +   +L    ++ +  A +  +  ++   
Sbjct: 1   MNQTEQQFLKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADL 60

Query: 60  LA-FGGSNIDLESF-----------------VKVAGYSFYNTSEYSLSTLGST------- 94
                   +D   F                        F+   E     L          
Sbjct: 61  ANPEHEYYLDPVDFSEEELLEEIKIELEQRDFYTEKNVFWLPIESRWQFLQDNGPLVIGG 120

Query: 95  -----NTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSG 142
                + +    + +    DNA    E  +       + + + L+     L ++    + 
Sbjct: 121 AELDVDGKTKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQAKLNELINLIAT 180

Query: 143 IEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           I   H D     ++ ++YE+++ +F     +    F TP  +V L   ++   +      
Sbjct: 181 IPFVHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVTLIVEMIEPFEG----- 235

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETHAVCV 256
                  +YDP  G+GGF   +   +    +  ++        +  +GQE    T  +  
Sbjct: 236 ------RVYDPAMGSGGFFVQSEKFIERHANEKQVDAITQKQKISIYGQEYNHTTWQLAA 289

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M IR L+ D         +  ST +       R  + ++NPPF  K            
Sbjct: 290 MNMAIRGLDYD------FGKEPASTYTNVQHPDLRADFIMANPPFNMKEWNTG------- 336

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +    RF  G P   + +  ++ H+ + L       G  A++L++  +      + E  
Sbjct: 337 VDDNDPRFKYGQPPAGNANFAWMQHMLHHL----APEGSQALLLANGSM--SSTTNNEGT 390

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKVQLIN 426
           IR+ L+ENDLIE +VALP  LF  T I   +W L+  K             R+G+V  I+
Sbjct: 391 IRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKKPRVDKAGRKLRGRKGEVLFID 450

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           A +L      + +  R  + D  +++ D++ + + G+    + Y    
Sbjct: 451 ARNLGYM---KDRVLRDFSFDDVKRVADLFHAWKTGEEIHGVAYEDQA 495


>gi|224283254|ref|ZP_03646576.1| hypothetical protein BbifN4_05435 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140400|ref|ZP_07802593.1| HsdM [Bifidobacterium bifidum NCIMB 41171]
 gi|313132910|gb|EFR50527.1| HsdM [Bifidobacterium bifidum NCIMB 41171]
          Length = 855

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/650 (19%), Positives = 229/650 (35%), Gaps = 73/650 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L               E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMRDEDLEELR 61

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFED 117
             + +   +V+   GY     + +S            N R+ L ++  +     K +F  
Sbjct: 62  EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEAGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SREN 461
           I T + +L   + ++    V +++A+  +T       K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRDDDH---VLIVDASKYFTK----EGKNNKLRASDIKRIVDAVTGNRDV 448

Query: 462 GKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQ--SFWL 516
            KFSR++  D        + + R +  S   +   +   +   I  R +  L +  + + 
Sbjct: 449 DKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAESWDVYSTMFGGIPKRDIDALSKYWNVFP 508

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP----RAD 572
            + + +  +   +    +        N    +K    +            +       A+
Sbjct: 509 GLRRCLFAEENGHSAKLAVQDVREAVNADSDVKAYIQRYREAFIDYPAYIRGELVGNAAN 568

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
                  E + +  L   + +P    +  Y   +V     D++   I ID
Sbjct: 569 VSIAAEEETLANDLLRRLDGIPL---VDAYAAYQVL---DDSWQKTISID 612


>gi|90580558|ref|ZP_01236363.1| hsdM site-specific DNA-methyltransferase, type I modification
           [Vibrio angustum S14]
 gi|90438216|gb|EAS63402.1| hsdM site-specific DNA-methyltransferase, type I modification
           [Photobacterium angustum S14]
          Length = 567

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 194/550 (35%), Gaps = 88/550 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L   +W  A+ L        +   +L    ++ +  A +  +  ++           
Sbjct: 9   LKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQEEIKADLANPEHEYY 68

Query: 57  -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105
                  E+ LA   +    +         F+  +E     L     R    + +     
Sbjct: 69  IDPADFSEEELAQEIAIELEQRDFYTEKNVFWLPTESRWQFLQDNGPRVIGGADLEIDGK 128

Query: 106 --------SFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSGIEL-HPDT 149
                      DNA    E  +       + + A L+     L ++    + I   H D 
Sbjct: 129 VKKITSVGHLIDNALEGIERDNPKLKGVLNKSYAALKIDQAKLNELINLIATIPFVHADL 188

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               ++ ++YE+++ +F     +    F TP  +V L   ++   +             +
Sbjct: 189 NSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMIEPFEG-----------RV 237

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRL 264
           YDP  G+GGF   +   +    +  +I P+     +  +GQE    T  +    M IR L
Sbjct: 238 YDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQKISIYGQEYNHTTWQLAAMNMAIRGL 297

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D         +  ST +       R  + ++NPPF  K             +    RF
Sbjct: 298 DYD------FGKEPASTYTNVQHPDLRADFIMANPPFNMKEWNTG-------VDDNDPRF 344

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P + + +  ++ H+ + L    +  G  A++L++  +      + E  IR+ L+E 
Sbjct: 345 KYGQPPVGNANFAWMQHMLHHL----SADGSQALLLANGSM--SSTTNNEGTIRQALIEK 398

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKVQLINATDLWTSI 434
           DLIE +VALP  LF  T I   +W L+  KT            R+G+V  I+  +L    
Sbjct: 399 DLIECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRARKGEVLFIDVRNLGYM- 457

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG--YRRIKVLRPLRMSFILDK 492
             + +  R    D   ++ D+Y + + G+    + Y       + + +    +  F+L  
Sbjct: 458 --KDRVLRDFTRDDIEKVADLYHAWKTGEEVNGIAYEDQAGFCKSVTLEEITKHDFVLTP 515

Query: 493 TGLARLEADI 502
                   ++
Sbjct: 516 GRYVGATEEL 525


>gi|154492485|ref|ZP_02032111.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC
           43184]
 gi|254881870|ref|ZP_05254580.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|154087710|gb|EDN86755.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC
           43184]
 gi|254834663|gb|EET14972.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 513

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 98/536 (18%), Positives = 187/536 (34%), Gaps = 67/536 (12%)

Query: 1   MTEFTGSA----ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +   +      ++   +W +A +L G+    ++  V+L    L+ +    +     + 
Sbjct: 1   MAKKAKTKDVAKKTIEQTLWDSANELRGNLDAAEYKSVVLGLVFLKYINDCFKVKHDELV 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
            +   F     +      +    F+  ++     +     + +L + I    D A    E
Sbjct: 61  AEGAGFEEDPDEY-----IGDNIFFVPTDARWDKI----VKASLTAEIGVVIDTAMEALE 111

Query: 117 DFD------FSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
             +           AR E          +     LH   T    V+  +YE+ +  F  E
Sbjct: 112 QENRQLKSILPKNYARPELDKRRLGNVIDIFENNLHFTGTEARDVLGRVYEYFLGEFARE 171

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV     ++           P     ++DP CG+GG    +   +  
Sbjct: 172 EGKKGGEFYTPSCVVRTIVEVI----------QPYKG-KIFDPACGSGGMFVQSSKFIER 220

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              H      +  +GQEL   T  +    + I  +E+      +     G +   D    
Sbjct: 221 ---HRGNINQISVYGQELNSNTWKLAQMNLAICGIEA------NFGDSFGDSFHDDKHPF 271

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  + ++NPPF           +         R+  G+P   + +  ++ H+   L   
Sbjct: 272 LKADFVMANPPFNISKWGGDQLRDD-------PRWQYGIPPEGNANFAWMQHMLYHL--- 321

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR  +VL++  L + +    E EIR+ ++  DL+E IVA+P+ LF+   I   LW 
Sbjct: 322 -ADNGRIGLVLANGSLSSQQ--GTEGEIRKNIVNADLVEGIVAMPSQLFYNVQIPCCLWF 378

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRR--IINDDQ---RRQILDIYVSR----- 459
           L+ +K +   GK   I+A ++        ++       +D      +I + +        
Sbjct: 379 LTKKKAQP--GKTLFIDARNMGYMKDRTHRELSCGEETEDHGNDIGRIAETFEQFRAGTL 436

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           E  K FS +        +   +L P R   I +         +   R  S L   F
Sbjct: 437 ETEKGFSAIATIEDIEKQDF-ILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLF 491


>gi|261380921|ref|ZP_05985494.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria
           subflava NJ9703]
 gi|284796174|gb|EFC51521.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria
           subflava NJ9703]
          Length = 871

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 111/532 (20%), Positives = 206/532 (38%), Gaps = 60/532 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L   LE        +   F    
Sbjct: 2   NKQQLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADEL 61

Query: 67  ID-----LESFVKVAGYSF-----YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
            +     +    +  GY       ++T     S     + R  + ++  + +DN   +F+
Sbjct: 62  TESNGVLVNHIKRNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTTVFD 121

Query: 117 DF--DFSSTIARLEKAGLL-----YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                  S +++L             +    + I +      D V+  IYE+LI  F + 
Sbjct: 122 GIFKTLESGLSKLGDGATNQTNAVKDLFVLIADIPMDGKQGYD-VLGFIYEYLISMFAAN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++ D      +       ++YDPT G+G  L +  + VA 
Sbjct: 181 AGKKAGEFYTPHEVSLLMSEIIADHLKDREEI------SIYDPTSGSGSLLINIGHSVA- 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              H K    +  + QEL+  T+ +    +++R +        +   +   TL  D    
Sbjct: 234 --KHLKSADSIKYYAQELKENTYNLTRMNLVMRGI-----LPSNIFTRNADTLEDDWPLE 286

Query: 290 KR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                    +SNPP+ + W       +  +K     RF  G+   +     FL+H    L
Sbjct: 287 GEPLYLDAVVSNPPYSQPWNPKDKESDIRYK-----RF--GVAPQAKADFAFLLHDLFHL 339

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G   IVL    LF    G  E +IR+ L+E + I+AI+ LP ++FF T I T 
Sbjct: 340 K----PDGIMTIVLPHGVLFR---GGEEEKIRKNLIEYNHIDAIIGLPANIFFGTGIPTI 392

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFS 465
           + +L     E  R  V +I+A+  +  +     K   +     ++I+D     RE  KFS
Sbjct: 393 IVVLRQ---ERERNDVLMIDASKYFIKV----GKNNHLQASDIKRIVDCVTHRRELPKFS 445

Query: 466 RMLDYRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
           R++           + + R +  +   ++  + A +   I   +L+     +
Sbjct: 446 RIVPKAEIVANGYNLNIPRYVDSAEPTEQWDIFATIHGGIPKAELAQFADYW 497


>gi|300721109|ref|YP_003710377.1| type I restriction-modification enzyme subunit M [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627594|emb|CBJ88113.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           nematophila ATCC 19061]
          Length = 819

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 130/623 (20%), Positives = 245/623 (39%), Gaps = 78/623 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +    +  R  +    +  G S 
Sbjct: 4   KKNELYSSLWASCDELRGGMDASQYKDYVLTMLFMKYVSDKYKNDRYGII--VIPEGASF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSST- 123
            D+ +                    G     + +   I   +D  +   +F+  +F+   
Sbjct: 62  DDMVALK------------------GKKEIGDKINKIIRKLADENRLGTMFDVANFNDEE 103

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D +M + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++   D            ++YDPTCG+G  L  A +         + P  L
Sbjct: 164 AEVSLVLAKIIGIND------KTPRDASVYDPTCGSGSLLLKASD---------EAPRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE++  T ++    M++   ESD       N         D    K F + ++NPP
Sbjct: 209 SIFGQEMDVTTSSLAKMNMILHGHESDVHSIQQGNTIASPVFKDDKGQLKTFDFAVANPP 268

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K            +  E GRFG G+P   +G   FL+H+   L+      G+ A++L
Sbjct: 269 FSNKNWTSG----INPREDEFGRFGWGIPPEKNGDYAFLLHILKSLK----STGKGAVIL 320

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----E 416
               LF G A   ES IR  L++   I+ I+ LP +LF+ T I   + +L  +       
Sbjct: 321 PHGVLFRGNA---ESLIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVLDKQDAISADF 377

Query: 417 ERRGKV------QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
           +  GKV       +I+A+  +    N+ +    +      +I++++  ++   +FSR+++
Sbjct: 378 DAEGKVTRGRDIFMIDASRGFIKDGNKNR----LRSQDIYKIVEVFTQQKTLPRFSRVVE 433

Query: 470 YRTF--GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD-ILKPMMQQ 525
           ++        + + R +  S   D   L A L+  I  R +  L + + +   ++  +  
Sbjct: 434 FKEIVENDYNLNIPRYIDSSEPEDLHDLSAHLQGGIPNRDIDALDKYWNIFPDIRSTLFA 493

Query: 526 IYPYGWAESFVKESIKSN------EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
               G++ S V  +   N      E KT   ++ K F     +A  ++    D   ++  
Sbjct: 494 PEREGYSRSLVDANQVKNTILSHAEFKTFAEQSLKPFATWCQSAALKEIRLKDKPKELIH 553

Query: 580 EWIPDTNLTEYENVPYLESIQDY 602
           E      +  YE++P L     Y
Sbjct: 554 EISEALLIR-YESLPLLSKYDVY 575


>gi|239621716|ref|ZP_04664747.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515591|gb|EEQ55458.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 855

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 109/513 (21%), Positives = 189/513 (36%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L         A         G +
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIARLRAEDWGAEDLKGLD 61

Query: 67  IDLESFVKV----AGYSF-----YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            +    V+      GY       ++T   S       + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYNNLFSTWIASQGDFTIADVRDALSAFERNIDPARKRVFVG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +  +  +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAVRDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEAGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G  AIVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMAIVLPHGVLFR---GGEEGAIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SREN 461
           I T + +L   + ++    V +++A+  +T       K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRNDDH---VLVVDASKYFTK----EGKNNKLRASDIKRIVDAVTGNRDI 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVSIDEIRQNDYNLNIPRYVDSSESAES 481


>gi|325832722|ref|ZP_08165485.1| type I restriction-modification system, M subunit [Eggerthella sp.
           HGA1]
 gi|325485861|gb|EGC88322.1| type I restriction-modification system, M subunit [Eggerthella sp.
           HGA1]
          Length = 524

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 218/560 (38%), Gaps = 77/560 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLA 61
           ++   A+ L+  +W  A DL G+   T F   IL       L    E     +  E  L 
Sbjct: 6   KYQAQASELSQKLWAIANDLRGNMDSTKFRNYILGTIFYSYLSERTEEYMQEILKEDGLT 65

Query: 62  FGGSNIDLESFVKVAGYSFYN-------------------------------TSEYSLST 90
           +  +  D +    V  +S  +                                 E +++ 
Sbjct: 66  YEQAFSDADYRPIVEQWSIEHLGYIIKPENLFRELVRKIVRPEGDVDKFSVEDYERAVNE 125

Query: 91  L-GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L GST  + +  ++   F+D      +D D   T+A  E+  L+ K+    S I+     
Sbjct: 126 LTGSTMGQASEAAFNGLFND---MKLQDPDLGDTVA--ERTALISKVIVKISEIDFSLSD 180

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               V+   Y  LI  F S+  + + +F TP     L   L     D          +T+
Sbjct: 181 SQFDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA--------KTV 232

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D TCG+   L +   H+      H        +GQE    T+ +    ML+  ++    
Sbjct: 233 GDCTCGSASMLLEVQKHLTTGRVGH-------FYGQENNATTYNLARMNMLMHGVDYQ-- 283

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              + +I +G TL +D +   +    + NPP+  K++ +   ++    +G        LP
Sbjct: 284 ---NFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDANPALLDDPRYSG-----AGKLP 335

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIE 388
             S     F+ H+   ++   +  GR A++L    LF G A   E  IR++++++ + ++
Sbjct: 336 PKSHADYAFVEHMIYHMD---DDDGRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRLD 389

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ L  +LF  T+I   L +L   K     G V  I+A+  +   +N    +  + D+ 
Sbjct: 390 AVIGLAPNLFHGTSIPVCLLVL-KTKRNGNSGNVLFIDASKEFKPGKN----QNTLEDEH 444

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            ++I+D YV RE+  KF+ + D          +  P R     ++     LEA     K 
Sbjct: 445 IQKIVDAYVKREDVDKFAHVADMAEIEANGWNLNIP-RYVDTFEEEKPVDLEAVRDDLKR 503

Query: 508 SPLHQSFWLDILKPMMQQIY 527
               +   +D  + M++Q+ 
Sbjct: 504 IESEKKAAIDKAELMLRQLG 523


>gi|261492504|ref|ZP_05989058.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496910|ref|ZP_05993278.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307434|gb|EEY08769.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311867|gb|EEY13016.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 552

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 100/500 (20%), Positives = 189/500 (37%), Gaps = 80/500 (16%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
           T        L   +W  A+ L  +    ++  ++L F  L+ +  +    ++ ++     
Sbjct: 13  TVSQAFLNDLDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTT 72

Query: 57  -EKYLAFGGSNIDLESFVKV------------AGYSFYNTSEYSLSTLGSTNTRN----- 98
            E  L    +  D + F ++            A   F+   +     + S +  N     
Sbjct: 73  PESELYLDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDEL 132

Query: 99  ---NLESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHP-- 147
              +    ++   D+A    E  +      + R+        +L  +   FS        
Sbjct: 133 PWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPM 192

Query: 148 ------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                       ++ ++YE+ + +F     +    + TP+ +V L   +L          
Sbjct: 193 HNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLKPYSG----- 247

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  +YDP  G+GGF   A   +    +H      +  +GQE  P T  + V  M I
Sbjct: 248 ------RIYDPAMGSGGFFVQADRFIQ---AHQGNRNAISVYGQESNPNTRKLAVMNMAI 298

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGE 320
           R +  D         +   TL   L   K+    ++NPPF +K W  +  A +       
Sbjct: 299 RGIPFD------FGDKPEDTLLNPLHIDKKMDVVMANPPFNQKAWWSESLAND------- 345

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R+  G P   + +  +L H+   L    +  G+ A++L++  +      SGE +IR+ 
Sbjct: 346 -PRWAYGTPPQGNANFAWLQHMIYHL----SPKGKMALLLANGSM--SSQTSGEGDIRKN 398

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +++ DL+EA++ALP  LF  T I   +WI++  K   R+ +V  INAT +      + + 
Sbjct: 399 IVQADLVEAMIALPNQLFTNTQIPACIWIINKAKA--RKKEVLFINATQIGYM---KDRV 453

Query: 441 RRIINDDQRRQILDIYVSRE 460
            R    D   +I D Y + +
Sbjct: 454 LRDFTADDIAKISDTYHNWQ 473


>gi|168698315|ref|ZP_02730592.1| type I restriction-modification system specificity subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 521

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 94/502 (18%), Positives = 173/502 (34%), Gaps = 61/502 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + + L G    + +   +L    ++ +                    ++
Sbjct: 4   KKSELYSSLWSSCDALRGGMDASQYKDYVLFMLFIKYVSDKY----------------AD 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA- 125
                     G  F +                  ++ +          F D DF+     
Sbjct: 48  NPFPPIKIPEGARFKD---MVALKGKPDIGDQINKNVLGPIGKENGIDFGDLDFNDAAKL 104

Query: 126 --RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               E    L  +   F    ++   +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 105 GSGKEMVDRLTTLVAIFEDKRLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTP 164

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   +L      +         T+YDPTCG+G  L    +               
Sbjct: 165 AEVSRIIAQVL-----GIRDAKTSANTTVYDPTCGSGSLLLKVADEARTKP--------- 210

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T  +    M++     +    + +         KD    K F Y ++NPP
Sbjct: 211 TLYGQEKDAATSGLARMNMILHD---NAGALIVQGNTLTDPKFKDGDALKTFDYVVANPP 267

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  K          +       RF   G P    G   +L+H+   L+      GR A +
Sbjct: 268 FSDKRWSTGL----DPLKDTYERFQHFGAPPAKQGDYAYLLHIVRSLK----STGRGACI 319

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+EIR+ L+    I+ I+ LP +LF+ T I   + ++  +    R 
Sbjct: 320 LPHGVLFRGNA---EAEIRKKLVAKRYIKGIIGLPANLFYGTGIPACIIVIDKQDAAARA 376

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYRRI 478
           G V +I+A+  +         +  +      +I+D +   R   KFSR++ +        
Sbjct: 377 G-VFMIDASAGFMK----DGPKNRLRARDIHKIVDAFTQGRTIPKFSRLVPFEEIEKNDF 431

Query: 479 KVLRPLRMSFILDKTGLARLEA 500
            +  P  +    +   L  +E 
Sbjct: 432 NLNLPRYIDSQ-EAEDLQNIEG 452


>gi|120556287|ref|YP_960638.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120326136|gb|ABM20451.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 570

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 107/583 (18%), Positives = 193/583 (33%), Gaps = 103/583 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M         +L + +WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEELLERF 60

Query: 57  ------------EKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNT--- 96
                       E Y         L   +++  Y      F+       STL        
Sbjct: 61  KDQNDDIYYLPPEDYDGHEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLPV 120

Query: 97  ----------RNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNF 140
                      +     ++   DNA    E  +       +           L  +   F
Sbjct: 121 GTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRISQYQLDNDKLLGLINTF 180

Query: 141 SGIELH--------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           S                    ++ ++YE+ + +F     +    + TP+ +V L   +L 
Sbjct: 181 SDTSFTRPVFEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML- 239

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQEL 247
                     P     +YDP  G+GGF   +   + +  S       +    +  +GQE 
Sbjct: 240 ---------QPYSG-RVYDPAMGSGGFFVSSDKFIEEHASEQHYDAGEQKKHISVYGQES 289

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            P T  +    M IR +      D +   +   T   D     R  + ++NPPF  K   
Sbjct: 290 NPTTWRLAAMNMAIRGI------DFNFGKKNADTFLDDQHPDLRADFVMANPPFNIKDWW 343

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +   +         R+  G P   + +  ++ H+ + L       G  A++L++  +  
Sbjct: 344 SESLADDV-------RWKYGTPPKGNANFGWMQHMLHHL----APTGSMALLLANGSM-- 390

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR---------KTEER 418
               + E EIR+ L+E DL+E +VALP  LF  T I   +W L+           K  +R
Sbjct: 391 SSNTNNEGEIRKRLVEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGMVRNEKKRDR 450

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYR 471
           R +   I+A +L        +  R   +D   +I D + + + G+       F +     
Sbjct: 451 REEFLFIDARNLGFM---RDRVLRDFTNDDVAKIADTFHAWQRGEGYEDVAGFCKSASLD 507

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   VL P R     ++       A+   R    L + F
Sbjct: 508 EIKKHDF-VLTPGRYVGAQEQEDDGEPFAEKMARLTGQLREQF 549


>gi|208435398|ref|YP_002267064.1| typeI restriction enzyme M protein [Helicobacter pylori G27]
 gi|208433327|gb|ACI28198.1| typeI restriction enzyme M protein [Helicobacter pylori G27]
          Length = 814

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 123/634 (19%), Positives = 237/634 (37%), Gaps = 74/634 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KARN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G+    + L   IA  ++  + + + +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGNKEIGDKLNKIIAKIAERNDLEGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +        ++    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPLFIENG-MLKTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 269 FSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 325 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENART 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 382 RKG-VFVIDASKDFKKDGNKNR----LREQDVQKMIDTFNAYKEIPHYSKMVSLEEISAN 436

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              + + R +      +K   A + +     K        +  + K +   ++     E 
Sbjct: 437 DYNLNIPRYITTKQESEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKNTLFKKSDKEG 496

Query: 535 FVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
           +     +    K   ++            S    +     F   +P  +P T +  E + 
Sbjct: 497 YYALKTECENIKESIIQSSEFQTFHASVLSAFDRLELFTTFNDLEPGFNPKTLI--ESVC 554

Query: 584 DTNLTEYENVPYLESIQDY--FVREVSPHVPDAY 615
              L E+E V  L+    Y  F    +  + D +
Sbjct: 555 SKVLKEFEKVGILDKYGVYQLFKDYYNEVLQDDW 588


>gi|126665697|ref|ZP_01736678.1| type I restriction-modification system methylation subunit
           [Marinobacter sp. ELB17]
 gi|126629631|gb|EBA00248.1| type I restriction-modification system methylation subunit
           [Marinobacter sp. ELB17]
          Length = 570

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 195/584 (33%), Gaps = 105/584 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------- 49
           M         +L + +WK A+ L  +    ++  V+L    L+ +  A E          
Sbjct: 1   MHNTEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEELLELF 60

Query: 50  -----------PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-- 96
                      P      EKY       +++  + + A   F+       +TL       
Sbjct: 61  KTDSDDNIYYLPREDFDDEKYQQALIEELEVLDYYREA-NVFWVPKPARWNTLKEKAVLP 119

Query: 97  -----------RNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKN 139
                       +     ++   DNA    E  +       +           L  +   
Sbjct: 120 VGTVLWQDDVGGDVKLRSVSWLIDNALEDIEKSNTKLKGILNRISQYQLDNDKLLGLINT 179

Query: 140 FSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           FS              +     ++ ++YE+ + +F     +    + TP+ +V L   +L
Sbjct: 180 FSDTSFTKPIFEGEKLELQSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML 239

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQE 246
                      P     +YDP  G+GGF   +   +    S       +    +  +GQE
Sbjct: 240 ----------QPYSG-RVYDPAMGSGGFFVSSDKFIEQHASEQHYDAAEQKKHISVYGQE 288

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    M IR +      D +   +   T   D     R  + ++NPPF  +  
Sbjct: 289 SNPTTWKLAAMNMAIRGI------DFNFGKKNADTFLDDQHPDLRADFVMANPPFNIRDW 342

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            ++   E         R+  G P   + +  +L H+ + L       G  A++LS+  + 
Sbjct: 343 WNESLTED-------ARWKYGTPPKGNANFGWLQHMLHHL----APTGSMALLLSNGSM- 390

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR---------KTEE 417
                + E EIR+ L+E DL+E +VALP  LF  T I   +W L+           K   
Sbjct: 391 -SSNTNNEGEIRKRLVEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGAIRNEKKRG 449

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDY 470
           R+ ++  I+A +L        +  R   ++   +I D + + + G+       F + +  
Sbjct: 450 RQKELLFIDARNLGFM---RDRVLRDFTNEDIAKIADTFHAWQRGENYEDVAGFCKSVSL 506

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                    VL P R     +        A+   R    L + F
Sbjct: 507 DEIKKHDF-VLTPGRYVGAQELEDDGEPFAEKMARLTGQLREQF 549


>gi|237807983|ref|YP_002892423.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas
           auensis DSM 9187]
 gi|237500244|gb|ACQ92837.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas
           auensis DSM 9187]
          Length = 567

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 102/528 (19%), Positives = 182/528 (34%), Gaps = 87/528 (16%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M E        L   +W  A+ L        +   +L    ++ +  A    +  ++   
Sbjct: 1   MNELEQQFLKDLEKKLWNAADKLRATLDAAQYKHAVLGLIFVKYVSDAFSIRQDEIKADL 60

Query: 60  LA-FGGSNIDLESF-----------------VKVAGYSFYNTSEYSLSTLGST------- 94
                   +D + F                        F+  +E     L          
Sbjct: 61  ANPEHEYYLDPDDFTPEELAEEIAIELEQRDYYTEKNVFWLPTESRWKFLQDNGPLVIGG 120

Query: 95  -----NTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSG 142
                +++    + +    DNA    E  +       +   A L+     L ++    + 
Sbjct: 121 ADLVIDSKPKKITSVGHLIDNALEGIERDNPKLKGVLNKHYAALKIDQAKLNELINLIAT 180

Query: 143 IEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           I   H       ++ +IYE+ +  F     +    F TP  +V L   ++   +      
Sbjct: 181 IPFTHKSLNSKDILGHIYEYFLGEFALAEGKKGGQFYTPASIVTLIVEMIEPFEG----- 235

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCV 256
                  +YDP  G+GGF   +   +      + I P+     +  +GQE    T  +  
Sbjct: 236 ------RVYDPAMGSGGFFVQSEKFIERYAGKNNIDPLTQKQKISIYGQEYNYTTWQLAA 289

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M IR L+ D         +  ST + D     R  + ++NPPF  K            
Sbjct: 290 MNMAIRGLDYD------FGKEPASTYTNDQHPDLRADFIMANPPFNMKEWDAG------- 336

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +    R+  G P   + +  +L H+   L       G  A++L++  +      + E E
Sbjct: 337 VDDNDPRWKYGKPPSGNANFAWLQHMLYHL----APNGSQALLLANGSM--SSTTNNEGE 390

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKVQLIN 426
           IR+ L+ NDLIE +VALP  LF  T I   +W L+N K E           R+G+V  I+
Sbjct: 391 IRKNLVTNDLIECMVALPGQLFTNTQIPACIWFLTNNKGERTDKAGRKLRNRKGEVLFID 450

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           A  L      + +  R    D  +++ DI+ + + G+    + Y    
Sbjct: 451 ARQLGYM---KDRVLRDFTMDDIQKVADIFHAWKMGEAVNGVAYEDQA 495


>gi|145630827|ref|ZP_01786605.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
 gi|144983709|gb|EDJ91169.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
          Length = 555

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 191/561 (34%), Gaps = 88/561 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L    W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 20  LNELDEKFWVSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPGNPLY 79

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------L 100
           L     + + E                A   F+  +      L   +  N          
Sbjct: 80  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGK 139

Query: 101 ESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD-- 152
            S +A   D+A    E  +      + R+         L  +   FS       T     
Sbjct: 140 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGEP 199

Query: 153 ------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ + RF     +    + TP+ +V L   +L           P   
Sbjct: 200 VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG 249

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +A   +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 250 -RVYDPAMGSGGFFVQTERFIA---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 305

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NPPF       +   +         R+  
Sbjct: 306 D------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWAY 352

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 353 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 406

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 407 VECMVALPGQLFTNTQIPACIWFLNRNK--KRQGEVLFIDARQIGYM---KDRVLRDFTA 461

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I +   + +          F +             VL P R     ++       
Sbjct: 462 DDIAKIANTLHAWQKSNGYEDQAAFCKSATLEEIKDNDF-VLTPGRYVGTAEQEDDGVPF 520

Query: 500 ADITWRKLSPLHQSFWLDILK 520
            +   + L+ L +  +    K
Sbjct: 521 TEK-MQNLTALLKEQFEKSTK 540


>gi|187729921|ref|YP_001853815.1| type I restriction-modification system [Vibrio tapetis]
 gi|182894480|gb|ACB99645.1| type I restriction-modification system N6-methylase [Vibrio
           tapetis]
          Length = 864

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 111/528 (21%), Positives = 202/528 (38%), Gaps = 55/528 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  D+   IL F   + L               +      
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANDYKDYILGFIFYKFLSDKQVQFLINNEFDEQSIKELN 61

Query: 64  GSNIDLESFVKVA-GYSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFED 117
             + D  ++V+   GY     + +S       +      R+ L ++    +   K +FE 
Sbjct: 62  EQDEDTLNYVRNEIGYFIAYDNLFSTWVEDGQDFDIAYVRDALSAFGRLINPAHKDLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K              +    + I +        V+  IYE+LI +F + 
Sbjct: 122 I-FNTLETGLSKLGENAASQTKAARSLIHLINDIPMKGKQ-DYDVLGFIYEYLISQFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++ D      K        +YDPT G+G  L +    V +
Sbjct: 180 AGKKAGEFYTPHEVSVLMSEIMADHLKDREKIQ------IYDPTSGSGSLLINIGQSVEN 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLF 287
                     +    QEL+  T+ +    + +R +  +     + +  +      S    
Sbjct: 234 ---RLGGENNIRYFAQELKKNTYNLTRMNLFMRGILPNDIITRNADTLEDDWPIDSNKTH 290

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R    +SNPP+ +KW       + E K+ +      GL   +     FL+H    ++
Sbjct: 291 EPLRVDAVVSNPPYSQKW-------DPEFKDKDPRYSPFGLAPKTKADYAFLLHDLYHIK 343

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   IVL    LF    G  E +IR  L+E + I+AI+ LP ++FF T I T +
Sbjct: 344 ----PDGIMTIVLPHGVLFR---GGDEGKIRENLIEKNHIDAIIGLPANVFFGTGIPTIV 396

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSR 466
            +L   K       V +I+A+  +        K   +     ++I+D  VSR++  KFS 
Sbjct: 397 LVL---KQTRNNDDVLIIDASKGFVK----EGKNNKLRACDIKRIVDTVVSRQSQLKFSA 449

Query: 467 MLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
           +++ +T       + + R +  S   +   + A +  DI   +L+ L 
Sbjct: 450 LVNRQTIRENGYNLNIPRYVDSSDEAESWDIYASMFGDIPNSELAALS 497


>gi|262377417|ref|ZP_06070640.1| type I restriction-modification system, M subunit [Acinetobacter
           lwoffii SH145]
 gi|262307647|gb|EEY88787.1| type I restriction-modification system, M subunit [Acinetobacter
           lwoffii SH145]
          Length = 576

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 104/586 (17%), Positives = 193/586 (32%), Gaps = 118/586 (20%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN- 66
              L + +WK A+ L       ++  ++L    L+ +  A +  +S ++E +      N 
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68

Query: 67  -------------------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                               +LE        + +   + +            + S I   
Sbjct: 69  YYMPRDQYDSEEEYQQAIADELEILDYYQEKNVFWVPKAARWLSIRNAAAQAIGSIIWQD 128

Query: 105 -----------ASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHP 147
                      +   DNA    E  +       +           L  +   FS      
Sbjct: 129 EQGQDVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQLDNDKLLDLINTFSDTSFTN 188

Query: 148 --------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                         ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 189 PEYNGEQLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML-------- 240

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAV 254
              P     +YDP  G+GGF   +   +            +    +  +GQE  P T  +
Sbjct: 241 --QPYKG-RVYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKL 297

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVE 313
               M IR +      D +   +   +   D     R  + ++NPPF  K W       +
Sbjct: 298 AAMNMAIRGI------DFNFGKKNADSFLDDQHPDLRADFVMANPPFNIKDWWHASLESD 351

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    R+  G P   + +  ++ H+ + L    +  G  A++L++  +      + 
Sbjct: 352 V--------RWKYGTPPQGNANFAWMQHMLHHL----SPTGSMALLLANGSM--SSNTNN 397

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQL 424
           E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R GK   
Sbjct: 398 EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLF 457

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK----- 479
           I+A +L      + +  R   D    +I     + + G+     ++    Y+  K     
Sbjct: 458 IDARNLGYM---KDRVLRDFTDADIAKITQTLHAWQQGE-----NFEGEKYQDEKGFCFS 509

Query: 480 -----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                      VL P R    +++       A+   R  + L + F
Sbjct: 510 AELKDIQKHDYVLTPGRYVGAVEQEDDGEPFAEKMLRLTTQLKEQF 555


>gi|229129743|ref|ZP_04258710.1| Type I restriction-modification system, M subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228653659|gb|EEL09530.1| Type I restriction-modification system, M subunit [Bacillus cereus
           BDRD-Cer4]
          Length = 512

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 110/551 (19%), Positives = 210/551 (38%), Gaps = 69/551 (12%)

Query: 26  FKHTDFGKVILPFTLLRRLECAL------------------EPTRSAVREKYLAFGGSNI 67
              +++   +L     + L   L                  E      RE        N 
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYDTQEKQTQLYRESLADEDIKND 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKAIFEDFDFS 121
            +E+ V   GY       +++ T  +       N  N     +++  D    +F+D D  
Sbjct: 61  LIETLVDTLGYDIELDYLFNVLTNQAKQNTFQLNDLNKAFIDLSTKYDQFNGLFDDVDLK 120

Query: 122 STI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           S        ++   + ++ K  + +++        V+ + YE LI +F SE  + A +F 
Sbjct: 121 SKKLGADDQQRNITITEVLKKLNDVDVLGHN--GDVIGDAYEFLIGQFASEAGKKAGEFY 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   +     +         + +++DPT G+G  + +  N++         P 
Sbjct: 179 TPHEVSVMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNIQNYI-------NHPD 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCL 296
            +  HGQEL   T+ +    +++  ++ +  R     ++ G TL+KD  T +   F   L
Sbjct: 226 SVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDTLNKDWPTDEPYTFDSVL 280

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  KW  D   ++    +    R+G  L   S     FL+H    L+      G  
Sbjct: 281 MNPPYSAKWSSDDTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK----DSGTM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF T+I T + IL   +  
Sbjct: 332 AIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGTSIPTTVIILKKNRAT 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
                V  I+A+  +   +N    +  +  +   +I++ Y  RE+  K++ +  +     
Sbjct: 389 R---DVLFIDASKEFIKGKN----QNKLFKEHIDKIVETYKKREDVEKYAHVATFDEIKE 441

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
               +  P  +    ++  +       T +++         ++   +    +    AE  
Sbjct: 442 NEFNLNIPRYVDTFEEEAPVDMAAIGSTIQEIRKEKAELESNLYDMISSLQFDEENAEWI 501

Query: 536 VKESIKSNEAK 546
                  N  K
Sbjct: 502 KGALEVFNREK 512


>gi|262374258|ref|ZP_06067534.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
 gi|262310816|gb|EEY91904.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
          Length = 576

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 178/519 (34%), Gaps = 97/519 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---------- 57
              L + +WK A+ L       ++  ++L    L+ +  A +  +S ++E          
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68

Query: 58  ------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----- 106
                 +Y +       +   +++  Y       +       +N R+     I S     
Sbjct: 69  YYMPRDQYDSEEEYQQAIADELEILDYYQEKNVFWVPKAGRWSNIRDAAALPIGSVIWQD 128

Query: 107 -------------FSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHP 147
                          DNA    E  +       +           L  +   FS      
Sbjct: 129 EQGADVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQLDNDKLLDLINTFSDTSFTN 188

Query: 148 --------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                         ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 189 PEYNGEQLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML-------- 240

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAV 254
              P     +YDP  G+GGF   +   +            +    +  +GQE  P T  +
Sbjct: 241 --QPYKG-RVYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKL 297

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVE 313
               M IR +      D +   +   +  +D     R  + ++NPPF  K W       +
Sbjct: 298 AAMNMAIRGI------DFNFGKKNADSFLEDQHPDLRADFVMANPPFNIKDWWHASLEND 351

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    R+  G P   + +  ++ H+ + L    +  G  A++L++  +      + 
Sbjct: 352 V--------RWKYGTPPQGNANFAWMQHMLHHL----SPTGSMALLLANGSM--SSNTNN 397

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQL 424
           E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R GK   
Sbjct: 398 EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLF 457

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           I+A +L      + +  R   D    +I +   + + G+
Sbjct: 458 IDARNLGYM---KDRVLRDFTDADIAKITNALHAWQQGE 493


>gi|46143389|ref|ZP_00135350.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126208115|ref|YP_001053340.1| putative type I modification enzyme [Actinobacillus
           pleuropneumoniae L20]
 gi|126096907|gb|ABN73735.1| putative type I modification enzyme [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 521

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 96/481 (19%), Positives = 173/481 (35%), Gaps = 72/481 (14%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA------------FGG 64
           K A+ L       ++  ++L    L+ +  +    R  +  ++                 
Sbjct: 3   KAADKLRQQLDAANYKHIVLGLIFLKYVSDSFTAQRERLSAQFRDPNSDYYLSDITTEEI 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLS--------TLGSTNTRNNLESYIASFSDNAKAIFE 116
            +   E         F+       +         LG T   N     +A+  D A    E
Sbjct: 63  ESELEERDYYTQDNVFWVPQIARWNEIKAVVRANLGDTIFENKTFKGVANLIDEAFDAIE 122

Query: 117 DFD--FSSTIARLE----KAGLLYKICKNFSGIEL-HP-------DTVPDRVMSNIYEHL 162
             +      I R+        +L  + + FS     HP             ++ ++YE+ 
Sbjct: 123 KDNPKLKGVIQRISSYNVDESILIGLVELFSDTNFTHPTLNGKPVSLAAKDILGHVYEYF 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F     +    + TP+ +V L   +L   +             +YDP  G+GGF   
Sbjct: 183 LGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYEG-----------RIYDPAMGSGGFFVQ 231

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + +   H   P  +  +GQE  P T  +    M IR L  D             T 
Sbjct: 232 TERFIRE---HQGNPNRVSIYGQEFNPTTWKLAAMNMAIRGLSFD------FGKGNADTF 282

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           S      KR  + ++NPPF      ++             R+  G P  S+ +  +L H+
Sbjct: 283 SNPQHLDKRMDFVMANPPFNMNEWWNQSLAND-------PRWKFGTPPSSNANFAWLQHM 335

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L    +  G+ A++L++  +      + E EIRR ++  DL+EA++ALP+ LF  T 
Sbjct: 336 IYHL----SEKGKMALLLANGSM--SSNTNNEGEIRRNIVRADLVEAMIALPSQLFTNTQ 389

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I   +W+L+  K   R+G+V  I+A  L      + +  R         + + Y   + G
Sbjct: 390 IPACIWVLNKAKP--RKGEVLFIDARQLGYM---KTRVMRDFTPKDIASVAETYHQWQKG 444

Query: 463 K 463
           +
Sbjct: 445 E 445


>gi|238921301|ref|YP_002934816.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri
           93-146]
 gi|238870870|gb|ACR70581.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri
           93-146]
          Length = 812

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 132/695 (18%), Positives = 249/695 (35%), Gaps = 97/695 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +                      
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKY----------------KG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
                 V   G SF    +  ++        + +   I      ++ K + ++ DF+   
Sbjct: 48  DPYGMIVIPKGASF----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMMDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L    +              L
Sbjct: 164 AEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSDETR---------RGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYC 295
              GQE++  T A+    M++         + +  I QG+TLS   +       K F + 
Sbjct: 209 SIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKVANGKLKTFDFA 261

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K          + K     RF  G+P   +G   FL+H+   L+      G+
Sbjct: 262 VANPPFSNKNWTSGL----DLKRDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGK 313

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++     
Sbjct: 314 GAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHA 370

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFG 474
             R+G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+      
Sbjct: 371 HSRKG-IFMIDASRGFIKDGNKNR----LRSRDIHRIVDVFNHQRTLPGYSRMVPLSDIA 425

Query: 475 YR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPY 529
                + + R +      D   L A L+  I  R +  L   + +   +   +     P 
Sbjct: 426 GNDYNLNIPRYIDGGEPEDLHDLSAHLQGGIPARDVDALQDYWRVFPALRDVLFTDDRPG 485

Query: 530 GWAESFVKESIKSNEAKTLKVKA---------SKSFIVAFINAFGRKDPRADPVTDVNGE 580
                   + +K       + K                A +N  G+ D     + D++  
Sbjct: 486 YCRAQVEAQQVKPTILAHQEFKDFSTRSLLPFKAWVKEAALNEIGKGDKPKALIHDISEM 545

Query: 581 WIPDTNLTE----YENVPYLES-IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG--- 632
            +     +E    Y     L     D    +V   + D +     I E     G+ G   
Sbjct: 546 LLAQYANSELLNKYSVYQILMDYWADTMQDDVYVIMQDGWQAAAHIRELQPVKGKDGKNV 605

Query: 633 ----YEINFNRFFYQY-QPSRKLQDIDAELKGVEA 662
               ++  F++  Y+     R L +I    + +EA
Sbjct: 606 WKEAHDFEFDKRRYKADVLPRSLVEIRCFPQQLEA 640


>gi|237807947|ref|YP_002892387.1| type I restriction-modification system, M subunit [Tolumonas
           auensis DSM 9187]
 gi|237500208|gb|ACQ92801.1| type I restriction-modification system, M subunit [Tolumonas
           auensis DSM 9187]
          Length = 805

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/515 (20%), Positives = 205/515 (39%), Gaps = 65/515 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L F  ++ +    +     +    +  G S 
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTFLFMKYVSDRYKGDPYGMI--VIPLGASF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
            D+++                    G     + +   I++    ++ K + +  DF+   
Sbjct: 62  DDMKALK------------------GDKEIGDKMNKIISALAEENDLKGVIDVADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLSKLIGIFEGLDLSANRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  + + ++          S     T+YDPTCG+G  L  A +              L
Sbjct: 164 SEVSRILSKVI------GIDASTPQDATVYDPTCGSGSLLLKASDEAE---------RGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299
             +GQE++  T A+    M++     +    + K         K+     K F + ++NP
Sbjct: 209 SIYGQEMDNATSALARMNMILHN---NATAKIWKGNTLVDPQWKEANGQLKTFDFAVANP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K                  RF  G+P   +G   FL+H+   L+      G+ A++
Sbjct: 266 PFSNKNWTSGL----NPNEDPFDRFTWGIPPEKNGDYTFLLHIIKSLK----STGKGAVI 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+ IR  LL+   I+ I+ LP +LF+ T I   + ++   +   R+
Sbjct: 318 LPHGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIVIDKAQAHSRK 374

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR-- 476
           G + +I+A+  +    N+ +    +      +++D++  + E  ++SRM+          
Sbjct: 375 G-IFMIDASKGFIKDGNKNR----LRAQDIHKVVDVFTKQLEQPRYSRMVPLSEIAANDY 429

Query: 477 RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPL 510
            + + R +  S   D   L A L+  I  R ++ L
Sbjct: 430 NLNIPRYIDASEPEDLHDLTAHLQGGIPDRDINAL 464


>gi|322689708|ref|YP_004209442.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461044|dbj|BAJ71664.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 855

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 190/513 (37%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---EKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L         A     E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVARLRAEDWGDEDLKGLD 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ +   +V+      ++  + ++T   S S     + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVTRNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEPGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L   + ++    V +++A+  +        K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRNDDH---VLVVDASKYFAK----DGKNNKLRASDIKRIVDTVSENRDV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVSLDEIRQNDYNLNIPRYVDSSETAES 481


>gi|23335512|ref|ZP_00120747.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Bifidobacterium longum DJO10A]
 gi|189440821|ref|YP_001955902.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum DJO10A]
 gi|189429256|gb|ACD99404.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum DJO10A]
          Length = 855

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 190/513 (37%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L     A         E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIARLRAEDWGDEDLKGLD 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ +   +V+      ++  + ++T   S S     + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVTRNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEPGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L   + ++    V +++A+  +        K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRNDDH---VLVVDASKYFAK----DGKNNKLRASDIKRIVDTVSENRDI 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVSLDEIRQNDYNLNIPRYVDSSETAES 481


>gi|226954358|ref|ZP_03824822.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244]
 gi|226834894|gb|EEH67277.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244]
          Length = 576

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/518 (18%), Positives = 177/518 (34%), Gaps = 97/518 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN- 66
              L + +WK A+ L       ++  ++L    L+ +  A +  ++ ++E +      N 
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVADAFDERQAELKELFAQADDHNI 68

Query: 67  -------IDLESFVKVA-------------GYSFYNTSEYSLSTLGSTNT---------- 96
                   D E   + A                F+       +TL +T            
Sbjct: 69  YYMPRDQYDTEEEYQQAIADELEIIDYYQEKNVFWVPKAARWTTLQNTAALAIGSIIWQD 128

Query: 97  ---RNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHP 147
              ++     I+   DNA    E  +       +           L  +   FS      
Sbjct: 129 EHGQDVKLRSISWLVDNAFDEIEKANPKLKGILNRIGQYQLDNDKLLDLINTFSDTSFTK 188

Query: 148 --------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                         ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 189 PEYNGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML-------- 240

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAV 254
              P     +YDP  G+GGF   +   +            +    +  +GQE  P T  +
Sbjct: 241 --QPYKG-RVYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKL 297

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVE 313
               M IR +      D +   +   T   D     R  + ++NPPF  K W       +
Sbjct: 298 AAMNMAIRGI------DFNFGKKNADTFLDDQHPDLRADFVMANPPFNIKDWWHASLESD 351

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    R+  G P   + +  ++ H+ + L    +  G  A++L++  +      + 
Sbjct: 352 V--------RWKYGTPPQGNANFAWMQHMLHHL----SPTGSMALLLANGSM--SSNTNN 397

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQL 424
           E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R GK   
Sbjct: 398 EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLF 457

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I+A +L      + +  R   D    +I     + + G
Sbjct: 458 IDARNLGYM---KDRVLRDFTDADIAKITHTLHAWQQG 492


>gi|227546693|ref|ZP_03976742.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212839|gb|EEI80718.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 855

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 190/513 (37%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---EKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L         A     E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVARLRAEDWGDEDLKGLD 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ +   +V+      ++  + ++T   S S     + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVTRNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEPGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L   + ++    V +++A+  +        K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRNDDH---VLVVDASKYFAK----DGKNNKLRASDIKRIVDTVSENRDV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVSLDEIRQNDYNLNIPRYVDSSETAES 481


>gi|308183636|ref|YP_003927763.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           PeCan4]
 gi|308065821|gb|ADO07713.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           PeCan4]
          Length = 820

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 135/644 (20%), Positives = 255/644 (39%), Gaps = 74/644 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 51  NNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAYIAEQNDLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
             +GQE +  T A+C   M++     +D  +  S  +     +  ++   + F Y ++NP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPFFIKNNML--QTFDYVVANP 271

Query: 300 PFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           PF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ 
Sbjct: 272 PFSLKNWTDGLSIDPKSKQIINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKG 327

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L      
Sbjct: 328 AVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAR 384

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGY 475
            R+G V LI+A+  +    N+ +    + +   ++++D + + +E   +S+M+       
Sbjct: 385 ARKG-VFLIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISA 439

Query: 476 R--RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGW 531
               + + R +      +K   A + +       K      + +  + K +   ++    
Sbjct: 440 NDYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIEAYAPYFQVFKELKNTLFKKSD 499

Query: 532 AESFVKESIKSNEAKTLKVKAS--KSFIVAFINA---------FGRKDPRADPVTDVNGE 580
            E +     +    K L  ++S  ++F  + +NA         F   +P  +P T +  E
Sbjct: 500 KEGYYALKTECQNIKDLITQSSEYQAFHASVLNAFDRLNLFETFDHLEPGFNPKTLI--E 557

Query: 581 WIPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
            +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 558 SVCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|221195101|ref|ZP_03568157.1| type I restriction-modification system, M subunit [Atopobium rimae
           ATCC 49626]
 gi|221185004|gb|EEE17395.1| type I restriction-modification system, M subunit [Atopobium rimae
           ATCC 49626]
          Length = 859

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/509 (20%), Positives = 192/509 (37%), Gaps = 51/509 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA+ IW +A ++    + +++   IL F   + L    E                +
Sbjct: 2   NKQQLASRIWASANEIRSKIEASEYKDYILGFIFYKFLSEKEEEYLLKEGFDSQTMKNVS 61

Query: 67  IDLESFVK---------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            D +  VK         +A  + Y+T          +N  + L ++    + +   +F+ 
Sbjct: 62  EDDQEIVKFVQDNVGYFIAYENLYSTWLSKGHDFDVSNVSDALSAFSRLVNPSYSHVFDR 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPD-----RVMSNIYEHLIRRFGSEVS 171
              +      +         K  S  ++L  D   D      V+  IYE+LI  F +   
Sbjct: 122 VFETLETGLSKLGDTSGSRTKAISSLLQLIRDIPMDARQGYDVLGYIYEYLISNFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + ++        +        +YDPT G+G  L +    VA   
Sbjct: 182 KKAGEFYTPHEVSLLMSEIVAGHLKGRHEIE------IYDPTSGSGSLLVNIGQAVAKRS 235

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  + QEL+  T+ +    +++R +++      + +  +           + 
Sbjct: 236 GN---KDSIKYYAQELKENTYNLTRMNLVMRGIKASNIIARNGDTLEDDWPWFSEGHPET 292

Query: 292 F-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           +        +SNPP+ ++W+     V+           G GL   S     FL+H    L
Sbjct: 293 YQPLFVDAVVSNPPYSQRWDPTDKEVDPRF-------NGFGLAPKSKADYAFLLHDLYHL 345

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G   IVL    LF    G  E EIR+ L+E D I+AI+ LP ++FF T I T 
Sbjct: 346 R----PDGIMTIVLPHGVLFR---GGEEGEIRKNLIERDHIDAIIGLPANIFFGTGIPTI 398

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +L  ++T   R  V +I+A+  +        K   +     R+I+D Y  RE+  +F 
Sbjct: 399 VMVLKKQRT---RSDVLIIDASKGYVK----EGKNNKLRASDIRRIVDAYECREDIERFC 451

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           R++           +  P  +        
Sbjct: 452 RLVSKDEIRGNDYNLNIPRYVDSSETTES 480


>gi|262369882|ref|ZP_06063209.1| N-6 DNA methylase [Acinetobacter johnsonii SH046]
 gi|262314921|gb|EEY95961.1| N-6 DNA methylase [Acinetobacter johnsonii SH046]
          Length = 576

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/586 (17%), Positives = 197/586 (33%), Gaps = 118/586 (20%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---------- 57
              L + +WK A+ L       ++  ++L    L+ +  A +  +S ++E          
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68

Query: 58  ------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--- 108
                 +Y +       +   +++  Y       +       +N R+     I S     
Sbjct: 69  YYMPRDQYDSEEEYQQSIADELEILDYYQEKNVFWVPKAGRWSNIRDAAALPIGSIIWQD 128

Query: 109 ---------------DNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELH- 146
                          DNA    E  +       +           L  +   FS      
Sbjct: 129 EQGQDVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQLDNDKLLDLINTFSDTSFTQ 188

Query: 147 -------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                   +     ++ ++YE+ + +F     +    + TP+ +V L   +L        
Sbjct: 189 PEYNGEKLNLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYKG--- 245

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----PILVPHGQELEPETHAV 254
                    +YDP  G+GGF   +   +       +         +  +GQE  P T  +
Sbjct: 246 --------RVYDPAMGSGGFFVSSEKFIEQHAQEKRYKASEQKKHISIYGQESNPTTWKL 297

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVE 313
               M IR +      D +   +   +  +D     R  + ++NPPF  K W       +
Sbjct: 298 AAMNMAIRGI------DFNFGKKNADSFLEDQHPDLRADFVMANPPFNIKDWWHASLEND 351

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    R+  G P   + +  ++ H+ + L    +  G  A++L++  +      + 
Sbjct: 352 V--------RWKYGTPPQGNANFAWMQHMLHHL----SPTGSMALLLANGSM--SSNTNN 397

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGKVQL 424
           E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R GK   
Sbjct: 398 EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREGKTLF 457

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK----- 479
           I+A +L      + +  R   D    +I +   + + G+     ++    Y+  K     
Sbjct: 458 IDARNLGYM---KDRVLRDFTDADIAKITNALHAWQQGE-----NFEGEAYQDEKGFCFS 509

Query: 480 -----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                      VL P R    +++       A+   R  + L + F
Sbjct: 510 AELKDIQKHDYVLTPGRYVGAVEQEDDGEPFAEKMLRLTAQLKEQF 555


>gi|262383640|ref|ZP_06076776.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294538|gb|EEY82470.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 530

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/553 (19%), Positives = 209/553 (37%), Gaps = 74/553 (13%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M + + +      +   +WK  + L G  + +++  V+L    L+      E  R  +  
Sbjct: 1   MAKKSINKKDNLPMEEVLWKACDALRGSIEPSEYKHVVLSLIFLKYAGFHFEKRRQEIVN 60

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDN 110
             L     N++       A   FY         L   + + N+ S        I   +  
Sbjct: 61  DGLEDFVDNVE----FYAAKNVFYLPETARWPYLKENSKQPNIASIVDKALSDIEKENKP 116

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +    +  +SS     EK G L      F  I    D   + ++  +YE+ + +F  + 
Sbjct: 117 LRGALPNNYYSSLGIEAEKLGSLLDKIDGFDTILESAD--GNDIIGRVYEYFLSKFAIKE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G  +F TP+ +V+L   ++   +             +YDP CG+GG    +M  V   
Sbjct: 175 GKGKGEFYTPKTIVNLIAEMIEPYEG-----------KIYDPCCGSGGMFVQSMKFVE-- 221

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            SHH     +  +GQE    T  +    + IR + +D            +T + D     
Sbjct: 222 -SHHGNRRKVSVYGQEYTKTTFKLAKMNLAIRGIAAD------LGDYAANTFTDDRHKDL 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + ++NPPF +K  +  + +  + +       G  +P  S+ +  +++++ +KL    
Sbjct: 275 KADFIMANPPFNQKDWRADNQLTDDPRWD-----GYDVPPTSNANYAWILNMVSKL---- 325

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G A  +L++  L    A   E EIRR ++E  L+EAIV LP +LF+ T+I+  LWI+
Sbjct: 326 SSNGVAGFILANGAL---SADGTEGEIRRKMIERGLVEAIVILPRNLFYSTDISVTLWII 382

Query: 411 SNRKT-------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +  K               +R  ++  I+   +        KK     D+  R++ D Y 
Sbjct: 383 NANKKGRLVNRNGEDIHYRDREKEILFIDMRQMGEPF---EKKYVRFTDEDIRKVADTYH 439

Query: 458 SRE----------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           + +            +F + +     G    K    +   +I        ++ D   ++L
Sbjct: 440 NWQREGHTETYTDIPEFCKSVSVGEDGGIADKGFSLVPSKYIEFVNRDESVDYDTRMKEL 499

Query: 508 SPLHQSFWLDILK 520
                       K
Sbjct: 500 QSELADILRQEAK 512


>gi|253687262|ref|YP_003016452.1| type I restriction-modification system, M subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753840|gb|ACT11916.1| type I restriction-modification system, M subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 814

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/718 (17%), Positives = 247/718 (34%), Gaps = 104/718 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +    +     +    +  G S 
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMI--VIPQGTSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFE--DFDFSS 122
            D+ +                    G     + +   I      ++ K++ +  DFD   
Sbjct: 62  DDMVALK------------------GDKEIGDKINKIIQKLAAENDLKSVIDVADFDDED 103

Query: 123 TIAR-LEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + +  E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLSKLVGIFEGLDLSGNRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L            + +    L
Sbjct: 164 AEVSRILAKVI------GITPETPQDATVYDPTCGSGSLLLKV---------NDEARRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNP 299
             +GQE++  T A+    M++     +    + K         K+     + F + ++NP
Sbjct: 209 SIYGQEMDNATSALARMNMILHN---NTTAKIWKGNTLSDPQWKEANGRLKAFDFAVANP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K            K     RF  G P   +G   FL+H+   L+      G+ A++
Sbjct: 266 PFSNKNWTSGL----NPKKDPFERFVWGTPPEKNGDYTFLLHIIKSLK----STGKGAVI 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++       R+
Sbjct: 318 LPHGVLFRGNA---EATIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRK 374

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFG---- 474
           G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+          
Sbjct: 375 G-IFMIDASRGFIKDGNKNR----LRSRDIHRIVDVFNHQRTVPGYSRMVPVSEIASEQN 429

Query: 475 YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPYGW 531
              + + R +      D   L A L+  I  R +  L   + +   +   +     P   
Sbjct: 430 AYNLNIPRYIDSGEPEDLHDLTAHLQGGIPMRDVDALQDYWQVFPALRDVLFTDDRPGYC 489

Query: 532 AESFVKESIKSNEAKTLKVKA---------SKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
                 + +K       + K                + ++   + D   + + D+    +
Sbjct: 490 RARVETQQVKPTILAHQEFKDFATRTLLPFKAWVKESALDGIDKGDKPKEQIQDIGEMLL 549

Query: 583 PDTNLTE----YENVPYLESIQ-DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG----- 632
                +E    Y     L     D    +V     D +     I E     G+ G     
Sbjct: 550 AHYANSELLNKYSAYQILMDYWFDTMQDDVYVITQDGWKAAAQIRELQPVKGKDGKNVWK 609

Query: 633 --YEINFNRFFYQ--------------YQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
             ++  F +  Y+                    L       +    Q+A  +EE A E
Sbjct: 610 EAHDFEFTKRRYKADVLPRSQIEKRCFPALLEALNSAQERSEEASRQLAEFIEEQAGE 667


>gi|269140412|ref|YP_003297113.1| type I restriction-modification system, M subunit [Edwardsiella
           tarda EIB202]
 gi|267986073|gb|ACY85902.1| type I restriction-modification system, M subunit [Edwardsiella
           tarda EIB202]
          Length = 812

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 130/686 (18%), Positives = 245/686 (35%), Gaps = 97/686 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +                      
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKY----------------KG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
                 V   G SF    +  ++        + +   I      ++ K + ++ DF+   
Sbjct: 48  DPYGMIVIPKGASF----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L    +              L
Sbjct: 164 AEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSDETR---------RGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYC 295
              GQE++  T A+    M++         + +  I QG+TLS   +       K F + 
Sbjct: 209 SIFGQEMDNATSALARMNMILHN-------NATAKICQGNTLSDPQWKEADGRLKAFDFA 261

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K          + K     RF  G+P   +G   FL+H+   L+      G+
Sbjct: 262 VANPPFSNKNWTSGL----DLKRDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGK 313

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++     
Sbjct: 314 GAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHA 370

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFG 474
             R+G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+      
Sbjct: 371 HSRKG-IFMIDASRGFIKDGNKNR----LRSRDIHRIVDVFNHQRTLPGYSRMVPLSDIA 425

Query: 475 YR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPY 529
                + + R +      D   L A L+  I  R +  L   + +   +   +     P 
Sbjct: 426 GNDYNLNIPRYIDGGEPEDLHDLSAHLQGGIPARDVDALQDYWRVFPALRDVLFTDDRPG 485

Query: 530 GWAESFVKESIKSNEAKTLKVKA---------SKSFIVAFINAFGRKDPRADPVTDVNGE 580
                   + +K       + K                A +N  G+ D     + D++  
Sbjct: 486 YCRAQVEAQQVKPTILAHQEFKDFATRSLLPFKAWVKEAALNEIGKGDKPKALIHDISEM 545

Query: 581 WIPDTNLTE----YENVPYLES-IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG--- 632
            +     +E    Y     L     D    +V   + D +     I E     G+ G   
Sbjct: 546 LLAQYANSELLNKYSVYQILMDYWADIMQDDVYVIMQDGWQAAAHIRELQPVKGKDGKNV 605

Query: 633 ----YEINFNRFFYQY-QPSRKLQDI 653
               ++  F++  Y+     R L +I
Sbjct: 606 WKEAHDFEFDKRRYKADVLPRSLVEI 631


>gi|289433646|ref|YP_003463518.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289169890|emb|CBH26430.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 858

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 142/738 (19%), Positives = 258/738 (34%), Gaps = 114/738 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------------ 54
           ++  +   +W  A +L G    + +   +L     + L         A            
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEIFKANSDCGQVSESEL 62

Query: 55  VREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
           V E   A       L+  ++ V GY       Y             ++  I S       
Sbjct: 63  VEEYAKARADYGESLDKMIQGVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 108 ------SDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                 SD+ + +F     D + T       E++  +  + + F  + +        V+ 
Sbjct: 123 ISVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNM-VALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIA---------AKTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +      +   L  +GQE    T+ +    +L+  +  +       ++
Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEK-----MSV 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + G TLS+D             F   + NPP+        +    + +    G     LP
Sbjct: 283 KNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDPRFEIAG----VLP 338

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I+ 
Sbjct: 339 PDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYIDT 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF  T I   + IL   +T      V +I+A+  +  +     K+ ++ +   
Sbjct: 392 IIGLPGNLFTNTGIPVCVLILKKNRTIS--DPVLVIDASRNFIKV----GKQNVLQEKDI 445

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADITWR 505
            +I+D YV R E   +S +            +  P  +  I ++      A L   I   
Sbjct: 446 ARIVDTYVERAEKTGYSHLASREEIIENEYNMNIPRYVEAIDEEIPHDVDAHLYGGIPQA 505

Query: 506 KLSPLH------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
            +  L       ++     LK +             + + + +++    K    +    A
Sbjct: 506 NIDELKTLQTTVKNVLDSSLKSIRDGYVQLEKPMDELTKEVLTDKNIIAKSDLIREKSQA 565

Query: 560 FINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY----FVREV----SPH- 610
           FI  + +K    + + DVN   + +  +   E +   + I  Y     + EV      H 
Sbjct: 566 FIENYWKKLHEINNILDVNP-LMEEMLVGIKELLSPFDGIDVYDGYQIIAEVWKKDLTHD 624

Query: 611 --------------VPDAYIDKIFIDEKDKEI--GRVGYEIN---FNRFFYQYQPSRKLQ 651
                         + +A +       K +E   G +G  +      +  Y  +  + ++
Sbjct: 625 AELIAGGGFYTIGRIREANMVTKGSGNKKREEQDGWIGAILPNELIAKHLYS-EELQVIE 683

Query: 652 DIDAELKGVEAQIATLLE 669
           D  A L  VEA+++ L+E
Sbjct: 684 DKKARLAAVEAELSELVE 701


>gi|260582497|ref|ZP_05850288.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094477|gb|EEW78374.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 579

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/557 (17%), Positives = 194/557 (34%), Gaps = 87/557 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LA 61
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +       L 
Sbjct: 45  LNELDEKLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENPLY 104

Query: 62  FGGSNIDLESFVK-------------VAGYSFYNTSEYSLSTLGSTNTRNN--------L 100
           F  +  D E   +              A   F+  +      L   +  N          
Sbjct: 105 FDRTFFDTEEEYQKALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGK 164

Query: 101 ESYIASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD-- 152
            + +A   D+A    E  +   +  + R+         L  +   FS     P    +  
Sbjct: 165 FAGVAKLIDDAFDAIEKDNEKLTGVLQRISGYAVNEDTLRGLIILFSDTHTRPTYNGEPV 224

Query: 153 -----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ +  F     +    + TP+ +V L   +L           P    
Sbjct: 225 HLGAKDILGHVYEYFLGHFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG- 273

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D
Sbjct: 274 RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYD 330

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                        + ++     K+  + ++NP F  K   ++   +         R+  G
Sbjct: 331 ------FGKYNADSFTQPQHIDKKMDFIMANPHFNDKDWWNESLADD-------PRWAYG 377

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL+
Sbjct: 378 TPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADLV 431

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    D
Sbjct: 432 ECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTAD 486

Query: 448 QRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              +I D   + +          F +             VL P R     ++       A
Sbjct: 487 DIAKIADTLHTWQTSDGYENQAAFCKSTTLEEIKDNDF-VLTPGRYVGTAEQEDDGVPFA 545

Query: 501 DITWRKLSPLHQSFWLD 517
           +   + L+ L +  +  
Sbjct: 546 EK-MQNLTALLKEQFAK 561


>gi|332674320|gb|AEE71137.1| type I restriction enzyme M protein [Helicobacter pylori 83]
          Length = 820

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 133/643 (20%), Positives = 250/643 (38%), Gaps = 72/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+   
Sbjct: 51  NNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGTIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFMIDASKDFKKDGNKSR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNTLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINA---------FGRKDPRADPVTDVNGEW 581
           E +     +    K L  ++S  ++F  + +NA         F   +P  +P T +  E 
Sbjct: 501 EGYYALKTECENIKDLITQSSEFQAFHASVLNAFDRLNLFETFDHLEPGFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|304560217|gb|ADM42881.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Edwardsiella tarda FL6-60]
          Length = 812

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 132/686 (19%), Positives = 248/686 (36%), Gaps = 97/686 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +    +     +    +  G S 
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMI--VVPKGASF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
            D+ +                          + +   I      ++ K + ++ DF+   
Sbjct: 62  DDMVALKNDKE------------------IGDKINKIIRRLAEENDLKGVIDEADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L    +              L
Sbjct: 164 AEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSDETR---------RGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYC 295
              GQE++  T A+    M++         + +  I QG+TLS   +       K F + 
Sbjct: 209 SIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEADGRLKAFDFA 261

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K          + K     RF  G+P   +G   FL+H+   L+      G+
Sbjct: 262 VANPPFSNKNWTSGL----DLKRDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGK 313

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++     
Sbjct: 314 GAVILPHGVLFRGNA---EANIRENLVKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHA 370

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFG 474
             R+G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+      
Sbjct: 371 HSRKG-IFMIDASRGFIKDGNKNR----LRSRDIHRIVDVFNHQRTLPGYSRMVPLSDIA 425

Query: 475 YR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPY 529
                + + R +      D   L A L   I  R +  L   + +   +   +     P 
Sbjct: 426 GNDYNLNIPRYIDGGEPEDLHDLSAHLLGGIPARDVDALQDYWQVFPALRDVLFADDRPD 485

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP-VTDVNGEWIPDTN-- 586
                   + +K       + K   +  +    A+ ++   AD    D   E I D +  
Sbjct: 486 YCRAQVEAQQVKPTILAHQEFKDFATRSLLPFKAWVKEAALADIGKGDKPKELIHDISEM 545

Query: 587 -LTEYENVPYLESIQDY----------FVREVSPHVPDAYIDKIFIDEKDKEIGRVG--- 632
            L +Y N   L     Y             +V   + D +     I E     G+ G   
Sbjct: 546 LLAQYANSELLNKYSVYQILMDYWADAMQDDVYVIMQDGWQAAAHIRELQPVKGKDGKNV 605

Query: 633 ----YEINFNRFFYQY-QPSRKLQDI 653
               ++  F++  Y+     R L +I
Sbjct: 606 WKEAHDFEFDKRRYKADVLPRSLVEI 631


>gi|317481749|ref|ZP_07940780.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916806|gb|EFV38197.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 855

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 190/513 (37%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L     A         E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIARLRAEDWGDEDLKGLD 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ +   +V+      ++  + ++T   S S     + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVTRNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEPGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L   + ++    V +++A+  +        K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRNDDH---VLVVDASKYFAK----DGKNNKLRASDIKRIVDAVSENRDV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVSIDEIRQNDYNLNIPRYVDSSETAES 481


>gi|307824515|ref|ZP_07654740.1| type I restriction-modification system, M subunit [Methylobacter
           tundripaludum SV96]
 gi|307734499|gb|EFO05351.1| type I restriction-modification system, M subunit [Methylobacter
           tundripaludum SV96]
          Length = 818

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 243/638 (38%), Gaps = 97/638 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W   ++L G    + +   +L    ++ +                    + 
Sbjct: 4   KKSELYSSLWSGCDELRGGMDASQYKDYVLVLLFIKYVSDKY----------------AG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           +     +   G SF    +  ++  G  +  + +   I +   NA  + +  DF+     
Sbjct: 48  VPYAPIIIPEGASF----KDMVAFKGKPDIGDQINKKIIAPLANANKLSDMPDFNDPSKL 103

Query: 127 LEKAGLLYKICKNFS-----GIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                ++ ++    +      ++   +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 GSGQEIVERLTNLIAIFENKALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++   D     ++     T+YDP CG+G  L    +         +    +
Sbjct: 164 AEVSRIMAQIIGIRDACTTNDT-----TVYDPACGSGSLLLKVGD---------EAHAKV 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYC 295
             +GQE +  T  +    M++         + +  I+QG+TL+  LFT      K F Y 
Sbjct: 210 TLYGQEKDAATSGLARMNMILHD-------NPTALIKQGNTLANPLFTSDDGQLKTFDYV 262

Query: 296 LSNPPFGKK-WEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
           ++NPPF  K W    D +   H+     RF   G P    G   +L+H+   L+      
Sbjct: 263 VANPPFSDKRWSTGIDPLNDPHR-----RFHDFGTPPDKQGDYAYLLHIVRSLK----ST 313

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+ A +L    LF G A   E++IR+ L+    I+ I+ LP +LF+ T I   + ++   
Sbjct: 314 GKGACILPHGVLFRGNA---EADIRKNLIRKGYIKGIIGLPANLFYGTGIPACIIVIDKE 370

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
               R+G + +I+A+  +    N+ +    + D    +I+D++  R E  K+SRM+    
Sbjct: 371 NAHTRKG-IFMIDASSGYIKDGNKNR----LRDMDIHRIVDVFNKRLEVAKYSRMVGVEE 425

Query: 473 FGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                  + + R +      D   +                Q +W     P ++Q     
Sbjct: 426 IEKNEFNLNIPRYIDSQQAEDIQDIEGHLKGGIPSADVDALQPYWDVC--PQLRQTLFKA 483

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG-----RKDPRADPVTDVNGEWIPDT 585
               ++  ++     KT   +      V+FI++        +D   + +  +  +  P T
Sbjct: 484 NRPGYLDLAVSKQSIKTSIYE--HPEFVSFIDSMSALFADWRDRSVETLKSLQADCHPKT 541

Query: 586 NLTE--------YENVPYLESIQDYFVREVSPHVPDAY 615
            + E        Y + P    I+ Y   +V  H+ D +
Sbjct: 542 VIGELAEDLLAHYTDKPL---IEQY---DVYQHLMDYW 573


>gi|120435035|ref|YP_860721.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117577185|emb|CAL65654.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 547

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/552 (19%), Positives = 204/552 (36%), Gaps = 73/552 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M++       L   +W  A  L G      F   +L F  LR L    E + +  + + Y
Sbjct: 1   MSKK--QQDKLGKTLWGIANKLRGAMNADAFRDYMLSFLFLRYLSHNYEESAKKELGKDY 58

Query: 60  -------------------LAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNT 96
                              + +  +  D+  F K      +        +S  T  +   
Sbjct: 59  PKSSSKDTRPDFVVPPPLEIWYEDNEEDIIEFEKQMQRKVHYVIKPKYLWSNITELARTH 118

Query: 97  RNNLESYIA---------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
             +L   I          SF      +F + + +S      +     K+C     I    
Sbjct: 119 HPDLLKTIEKGFRHIEEESFESTFHGLFSEINLNSEKLGKSEKERNDKLCTIIQKIAEGI 178

Query: 148 DTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESP- 203
                 +  + + YE+LI +F +   + A +F TP++V  + + ++ LD         P 
Sbjct: 179 AEFSTDIDTLGDAYEYLIGKFAAGSGKKAGEFYTPQEVSSVLSQIVTLDAQKPDHTSGPK 238

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +  + D  CG+G  L +    + D G           +GQE    T+ +    ML+  
Sbjct: 239 DKLNNVLDFACGSGSLLLNVRRRIKDNGGRIG-----KIYGQENNITTYNLARMNMLLHG 293

Query: 264 L-ESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           + +++        ++    +  ++   K+  F   ++NPPF  +WE  +         GE
Sbjct: 294 MKDTEFEIFHGDTLKNQWDILNEMNPSKKVEFDAIVANPPFSLRWEPTETL-------GE 346

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L    +  G  AI+L    LF   A   E  IR 
Sbjct: 347 DFRFKSYGLAPKSAADFAFLLHGFHFL----SQNGTMAIILPHGVLFRSGA---EERIRT 399

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  ++ ++ LP +LF+ T I   + ++   K   R   V  INA+        + K
Sbjct: 400 KLLKDGNVDTVIGLPANLFYSTGIPVCILVIKKCK---RESDVLFINASAEGN--YKKSK 454

Query: 440 KRRIINDDQRRQILDIYVSR--ENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTG 494
            +  +     + I++ Y SR  +  +++R +   +    GY  + + R +  +   ++  
Sbjct: 455 NQNELRKSDIKNIIETYKSRPKKIERYARRVSMDEIEDNGY-NLNISRYVSTAEAEEQIN 513

Query: 495 LARLEADITWRK 506
           L  +  ++   +
Sbjct: 514 LEEVHKELMDIE 525


>gi|296454640|ref|YP_003661783.1| type I restriction system adenine methylase HsdM [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184071|gb|ADH00953.1| type I restriction system adenine methylase HsdM [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 855

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 124/650 (19%), Positives = 230/650 (35%), Gaps = 73/650 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L         A         G +
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIAHLRAEDWGAEDLKGLD 61

Query: 67  IDLESFVKV----AGYSF-----YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            +    V+      GY       ++T   S       + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYNNLFSTWIASQGDFTIADVRDALSAFERNIDPARKRVFVG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +  +  +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAVRDLICLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVARNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEAGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+E   I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVEKHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SREN 461
           I T + +L   + ++    V +++A+  +T       K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRDDDH---VLIVDASKYFTK----EGKNNKLRASDIKRIVDAVTGNRDV 448

Query: 462 GKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQ--SFWL 516
            KFSR++  D        + + R +  S   +   +   +   I  R +  L +  + + 
Sbjct: 449 DKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAESWDVYSTMFGGIPKRDIDALSKYWNVFP 508

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP----RAD 572
            + + +  +   +    +        N    +K    +            +       A+
Sbjct: 509 GLRRCLFAEENGHSAKLTVQDVREAVNADSDVKAYIQRYREAFIDYPAYIRGELVGNAAN 568

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
                  E + +  L   + +P    +  Y   +V     D++   I ID
Sbjct: 569 VSIAAEEETLANDLLRRLDGIPL---VDAYAAYQVL---DDSWQKTISID 612


>gi|23466326|ref|NP_696929.1| hypothetical protein BL1782 [Bifidobacterium longum NCC2705]
 gi|23327081|gb|AAN25565.1| HsdM [Bifidobacterium longum NCC2705]
          Length = 855

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 190/513 (37%), Gaps = 58/513 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---EKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L         A     E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVAHLRAEDWGDEDLKGLD 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ +   +V+      ++  + ++T   S S     + R+ L ++  +     K +F  
Sbjct: 62  ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +     +      I +         +  IYE+LI  F S 
Sbjct: 122 I-FDTLQTGLSKLGTDEKSRSKAARDLIYLIKDIPMD-SRQDYDTLGFIYEYLISNFASN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA 
Sbjct: 180 AGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +   P  +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 234 RNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVTRNGDTLKSDWPWFDTDET 290

Query: 290 KR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           K            +SNPP+ + WE          + GE  RF  G+   S     FL+H 
Sbjct: 291 KDETYEPLFVDAVVSNPPYSQNWEP--------PEPGEDIRFEYGIAPKSKADYAFLLHD 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       G   IVL    LF    G  E  IRR L+EN  I+AI+ LP ++FF T 
Sbjct: 343 LYHLR----DDGIMTIVLPHGVLFR---GGEEGTIRRNLVENHHIQAIIGLPANIFFGTG 395

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSREN 461
           I T + +L   + ++    V +++A+  +        K   +     ++I+D    +R+ 
Sbjct: 396 IPTIVMVLRKHRNDDH---VLVVDASKYFAK----DGKNNKLRASDIKRIVDTVSENRDV 448

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            KFSR++           +  P  +        
Sbjct: 449 DKFSRLVSLDEIRQNDYNLNIPRYVDSSESAES 481


>gi|308064292|gb|ADO06179.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Sat464]
          Length = 820

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 146/727 (20%), Positives = 275/727 (37%), Gaps = 107/727 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 51  NNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V LI+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFLIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIATKQESEKDLFALINSHKASYLPKNEIEAYAPYFQVFKELKNTLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           E +     +    K L  +            +    +     F   +P  +P T +  E 
Sbjct: 501 EGYYALKTECQNIKDLITQSSEYQAFHACVLNAFDRLNLFETFDHLEPGFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDYF---------------------------VREVSPHVPDA 614
           +    L E+E V  L+    Y                            +RE++P + D 
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFNDFLSTKELRELNP-LKDK 617

Query: 615 YIDKIFIDEKDKEIGRVGYE---INFN----RFFYQYQPSRKLQDIDAELKGVEAQIATL 667
                +++E D  I +  Y+   I  N    RFF +   +++L+ ++  L   EA     
Sbjct: 618 NKKANYLEEPDFVIQKTYYKSDLIPKNLIKQRFFEK--EAKELEQLENALNEKEADFEEF 675

Query: 668 LEEMATE 674
           +EE + E
Sbjct: 676 IEEHSGE 682


>gi|256851078|ref|ZP_05556467.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660504|ref|ZP_05861419.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933734|ref|ZP_06339089.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|297205944|ref|ZP_06923339.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus jensenii JV-V16]
 gi|256616140|gb|EEU21328.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548226|gb|EEX24201.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302113|gb|EFA94360.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|297149070|gb|EFH29368.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus jensenii JV-V16]
          Length = 550

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/583 (18%), Positives = 217/583 (37%), Gaps = 81/583 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   +   +W  A +L G+   +++   IL F   R L    E          +  G S 
Sbjct: 2   SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLVKNDILDIEDGESV 61

Query: 67  ID--------------LESFVKVAGYSFYNTSEYS---------------LSTLGSTNTR 97
            D              LE      GY+      ++                  L     +
Sbjct: 62  NDAYVREASGEDLTDYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121

Query: 98  NNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N   +   + S + + +F D +   +       ++A  + KI +    IE + D     +
Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIE-YKDENGKDI 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE+LI +F +   +   +F TP +V  +   L+     A  K  P     +YDPTC
Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVT----ANLKGEPEEFE-VYDPTC 235

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V       K P ++  +GQE    T+ +    +++  +E       + 
Sbjct: 236 GSGSLLLTVQGEV----PGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEF-----TNI 286

Query: 275 NIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           ++    TL  D   G            F   ++NPP+   W+ +++ + K+ +    G+ 
Sbjct: 287 HLSNADTLEADWPDGLDAQGVDRPKTNFDAVVANPPYSAHWDNNENKL-KDPRFSAYGKL 345

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     +     F++H    L    +  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 346 AP----KTKADYAFVLHGLYHL----SPEGTMAIVLPHGVLFRGAA---EGVIRQNIIEK 394

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+  +I T + +    +  +    +  I+A+  +   +N    +  +
Sbjct: 395 NYLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEKGKN----QNKL 447

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL--E 499
            ++   +I+  Y+ RE+  K++   +          + + R +          L ++  E
Sbjct: 448 TEENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIPRYVDTFEPEPPVDLGKVADE 507

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
            +   +K++   +     + +            + F+    K+
Sbjct: 508 LEEVNQKIAENKKELLEMLKELTTDDDDLRAQLDKFISVFEKN 550


>gi|319896988|ref|YP_004135183.1| type i restriction enzyme hindviip m protein [Haemophilus
           influenzae F3031]
 gi|317432492|emb|CBY80849.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae F3031]
          Length = 586

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/559 (16%), Positives = 191/559 (34%), Gaps = 90/559 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47
              L   +W +A+ L       ++  ++L    L+ +                       
Sbjct: 51  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENVLY 110

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--------- 98
           L+ T     EKY     + ++   +   A   F+  +      L   +  N         
Sbjct: 111 LDRTFYDTEEKYQDALTAELENRDYY-TADNVFWVPASARWQALQEVSILNTGAELPWGG 169

Query: 99  ----------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                     +    I   ++  K + +     +      +  ++     +F+    + +
Sbjct: 170 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 229

Query: 149 TV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            V      ++ ++YE+ + RF     +    + TP+ +V L   +L           P  
Sbjct: 230 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYS 279

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++
Sbjct: 280 G-RVYDPAMGSGGFFVQTERFIT---AHQGNINNMSIYGQEFNPTTWKLAAMNMAIRGID 335

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D             + ++     K+  + ++NPPF       +   +         R+ 
Sbjct: 336 YD------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-------PRWA 382

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L    +  G+ A++L++  +      + E EI + ++  D
Sbjct: 383 YGTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIHKGIINAD 436

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R   
Sbjct: 437 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFT 491

Query: 446 DDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            D   +I D   + +          F +             VL P R     ++      
Sbjct: 492 ADDIAKISDTLHAWQKSDGYEDQAAFCKSATLEEIKDNDF-VLTPGRYVGTAEQEDDGVP 550

Query: 499 EADITWRKLSPLHQSFWLD 517
            A+   + L+ L +  +  
Sbjct: 551 FAEK-MQNLTALLKEQFAK 568


>gi|317178238|dbj|BAJ56027.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 820

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 134/643 (20%), Positives = 250/643 (38%), Gaps = 72/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   IL    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYILNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 51  NNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++             +        K+    + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCRMNMILHNSADADIAKGGSSTLSNPLFIKNG-MLQAFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAHA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNMLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFG---------RKDPRADPVTDVNGEW 581
           E +     +    K L  ++S  ++F  + +NAF            +P  +P T +  E 
Sbjct: 501 EGYYALKTECENIKDLITQSSEFQAFHASVLNAFDRLNLFETFNHLEPGFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|255011913|ref|ZP_05284039.1| type I restriction-modification system methylation subunit
           [Bacteroides fragilis 3_1_12]
 gi|313149747|ref|ZP_07811940.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138514|gb|EFR55874.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 512

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 190/517 (36%), Gaps = 50/517 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +     +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDEFKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGK 75

Query: 66  NIDLESFVKVAGYSFYNTSEYS-------LSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            ++        G  + +  E +       +    +    N  +          + IF   
Sbjct: 76  QVEDLPIRIPEGAHWRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIFGPK 135

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  +  A++  + +   + ++FS   L     P   M   YE+L+ +F  +    A++F 
Sbjct: 136 DGWTNKAKMPDSIITS-LIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFY 194

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G       
Sbjct: 195 TNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGDEW---Q 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +   GQE+   T ++    + +  +E         +I    TL    F      ++F  
Sbjct: 242 SVQVFGQEVNGLTSSIARMNLYLNGVED-------FSIVCADTLEHPAFLDGSHLRKFDI 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPP+  K    +        N + GR   G P        F+ H+   +       G
Sbjct: 295 VLANPPYSIKEWNREK-----FMNDKWGRNFLGTPPQGRADYAFIQHILASM---NEKNG 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+L    LF       E +IR+ L+ +D +EA++ L  +LF+ + +   +   +  K
Sbjct: 347 RCAILLPHGILFRQE----EKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACILFCNKNK 402

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTF 473
            +  + K+  INA +  T    E      + +   ++IL   Y + +  +F   +D    
Sbjct: 403 PQHLKDKIIFINAINEVTRKNGES----YLEEKHIKKILSAFYNNSDIPQFKETIDINDI 458

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                 +     +     K  +    A   W+ +   
Sbjct: 459 CNNEYDISIQKYVFINDLKEYIDCRSAFENWQNIKAE 495


>gi|238855187|ref|ZP_04645508.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|282934313|ref|ZP_06339583.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|313472057|ref|ZP_07812549.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 1153]
 gi|238832216|gb|EEQ24532.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|239530086|gb|EEQ69087.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 1153]
 gi|281301597|gb|EFA93871.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
          Length = 550

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/583 (18%), Positives = 217/583 (37%), Gaps = 81/583 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   +   +W  A +L G+   +++   IL F   R L    E          +  G S 
Sbjct: 2   SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGESI 61

Query: 67  ID--------------LESFVKVAGYSFYNTSEYS---------------LSTLGSTNTR 97
            D              LE      GY+      ++                  L     +
Sbjct: 62  NDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121

Query: 98  NNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N   +   + S + + +F D +   +       ++A  + KI +    IE + D     +
Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIE-YKDENGKDI 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE+LI +F +   +   +F TP +V  +   L+     A  K  P     +YDPTC
Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVT----ANLKGEPEEFE-VYDPTC 235

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V       K P ++  +GQE    T+ +    +++  +E       + 
Sbjct: 236 GSGSLLLTVQGEV----PGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEF-----TNI 286

Query: 275 NIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           ++    TL  D   G            F   ++NPP+   W+ +++ + K+ +    G+ 
Sbjct: 287 HLSNADTLEADWPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKL-KDPRFSAYGKL 345

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     +     F++H    L    +  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 346 AP----KTKADYAFVLHGLYHL----SPEGTMAIVLPHGVLFRGAA---EGVIRQNIIEK 394

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+  +I T + +    +  +    +  I+A+  +   +N    +  +
Sbjct: 395 NYLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEKGKN----QNKL 447

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL--E 499
            ++   +I+  Y+ RE+  K++   +          + + R +          L ++  E
Sbjct: 448 TEENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIPRYVDTFEPEPPVDLGKVADE 507

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
            +   +K++   +     + +            + F+    K+
Sbjct: 508 LEEVNQKIAENKKELLGMLKELTTDGDDLRAQLDKFISVFEKN 550


>gi|288563204|pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
 gi|288563205|pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
          Length = 542

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/571 (21%), Positives = 211/571 (36%), Gaps = 65/571 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------------- 47
           +E T ++ SL   +W +A+ L       D+   +L     + L                 
Sbjct: 2   SETTQTSQSLYQALWNSADVLRSKXDANDYKSYLLGXVFYKYLSDKXLFFVAETXEEETE 61

Query: 48  -LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
            L+   +  R+ Y         L        Y+ +    ++       +    LE     
Sbjct: 62  SLDEALAVYRKYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERVNDGSFQLEDLAQG 121

Query: 107 FSDNAKAI------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           F D  ++       FED D  S        ++   +  + K  + +++         + +
Sbjct: 122 FRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVXKELAVLDVAGHA--GDXLGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+G
Sbjct: 180 AYEYLIGQFATDSGKKAGEFYTPQPVAKLXTQIAFLGRED------KQGFTLYDATXGSG 233

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +A  +          P  +V  GQEL   T+ +     ++  +        ++ + 
Sbjct: 234 SLLLNAKRYSRQ-------PQTVVYFGQELNTSTYNLARXNXILHGV-----PIENQFLH 281

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              TL +D  T +   F   L NPP+  KW       +    +     FG  L   S   
Sbjct: 282 NADTLDEDWPTQEPTNFDGVLXNPPYSAKWSASSGFXD----DPRFSPFGK-LAPKSKAD 336

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ LP 
Sbjct: 337 FAFLLHGYYHLKQ---DNGVXAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIGLPA 390

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T+I T + IL   +T      V  I+A+  +   +N    + I  D    +IL+ 
Sbjct: 391 NIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDKGKN----QNIXTDAHIEKILNA 443

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y SRE+  KF+ +  +         +  P  +    ++      E      + +   +S 
Sbjct: 444 YKSREDIDKFAHLASFEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVAKINQTNATIESQ 503

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
              +L  + Q       A+  +K  +K+ + 
Sbjct: 504 TASLLDXLGQLHGTTPEADEELKAFVKAFKG 534


>gi|317011670|gb|ADU85417.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           SouthAfrica7]
          Length = 817

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 217/564 (38%), Gaps = 60/564 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                    + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDK-----------------AK 46

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D +S + V    FY             +  N + + IA  +D  K   +  DF+     
Sbjct: 47  NDPDSDIIVPQGCFYEDILALEGDKEIGDKLNKIIAKIAEQNDLLKGAIDSVDFNDNTKL 106

Query: 127 LEKAGLL---YKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            E   ++     + K F+ + L     + D ++ + YE+L+R F SE  +    F TP +
Sbjct: 107 GEGKAMMDTLSNLIKIFANLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTPSE 166

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V        L         +    +T+YDPTCG+G  L  A +   + G        L  
Sbjct: 167 VSL------LLSLLLEIDGNTRQDKTIYDPTCGSGSLLLKASSLAGENG--------LTI 212

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE +  T A+C   M++    +        +        ++    K F Y ++NPPF 
Sbjct: 213 YGQEKDNSTTALCKMNMVLHNSATADIAKGGSSTLSNPHFLENG-MLKTFDYVVANPPFS 271

Query: 303 KKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
            K   D  +++ + K   +    RF  G P   +G   FL+H+   L+      G+ A++
Sbjct: 272 LKNWTDGLSIDPKSKQVIDDNFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGAVI 327

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E  IR+ +L    I+ ++ L  +LF+ T+I   + +L       R+
Sbjct: 328 LPHGVLFRGNA---EGVIRKNILTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARARK 384

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYRRI 478
           G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+          
Sbjct: 385 G-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFKAKKEIPYYSKMVSLEEISANDY 439

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            +  P  +        +A  E +     L   H++ +L   +      Y   + E     
Sbjct: 440 NLNIPRYI--------VAEQELEKDLFALINSHKANYLPKNEIEAYAPYFKVFKELKNTL 491

Query: 539 SIKSNEAKTLKVKASKSFIVAFIN 562
             KS++     +K     I   I 
Sbjct: 492 FKKSDKEGYYALKTECENIKDLIT 515


>gi|312970037|ref|ZP_07784219.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70]
 gi|310337535|gb|EFQ02646.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70]
          Length = 497

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 176/438 (40%), Gaps = 55/438 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +    E  R  +     A     +++E F +     FY   E   S +     ++
Sbjct: 1   MFLKFISDKFEARRKKMIADGQA---DFLEMEVFYQQ-DNIFYLPEEARWSFIKQNAKQD 56

Query: 99  NLE-------SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-- 149
           ++        S I   +   K    D  FS      +K   L     N   +    D   
Sbjct: 57  DIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLETKKLASLIDTIDNIETLAHETDVET 116

Query: 150 -VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              + ++  +YE+ + +F +   +G  +F TP+ VV L T +L                 
Sbjct: 117 LSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVVTLLTEMLEPFQG-----------K 165

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+ G    ++  V    SH      +  +GQEL   T+ +    + IR L +  
Sbjct: 166 IYDPCCGSAGMFVQSVKFVE---SHQGKSRDIALYGQELTATTYKLAKMNLAIRGLSA-- 220

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +   +   T   D     +  Y L+NPPF  K  +++  + K+ +       G  +
Sbjct: 221 ----NLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNEAELTKDPRFA-----GYRM 271

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  +++H+ +KL    +  G A  VL++  +      SGE EIR  ++ENDLI+
Sbjct: 272 PPTGNANYGWILHMLSKL----SANGTAGFVLANGSM--SSNTSGEGEIRAQMIENDLID 325

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRNEGKKR 441
            ++ALP  LF+ T I   LW ++  K         +R+G+   I+A +L T I    +  
Sbjct: 326 CMIALPGQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMI---SRTT 382

Query: 442 RIINDDQRRQILDIYVSR 459
           + +  +    I D Y + 
Sbjct: 383 KELTAEDIATIADTYHAW 400


>gi|315585917|gb|ADU40298.1| type I restriction-modification system protein [Helicobacter pylori
           35A]
          Length = 820

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 134/643 (20%), Positives = 250/643 (38%), Gaps = 72/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+   
Sbjct: 51  NNTYSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNGLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCRMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIKAYAPYFKVFKELKNTLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRADPVTDVNGEW 581
           E +     +    K L  ++S  ++F  +  NAF R +         P  +P T +  E 
Sbjct: 501 EGYYALKTECENIKDLITQSSEFQAFHASVSNAFDRLNLFETFDNLKPDFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|254780040|ref|YP_003058147.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori B38]
 gi|254001953|emb|CAX30210.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori B38]
          Length = 816

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 123/636 (19%), Positives = 232/636 (36%), Gaps = 76/636 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KARN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+  F SE  +    F TP
Sbjct: 104 KLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMCHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +        K+    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPFFIKNG-MLKTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 269 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----NTGKGA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + IL       
Sbjct: 325 VILPHGVLFRGNA---EGAIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIILDKENAHA 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 382 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISTN 436

Query: 477 RIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +  P  ++   +       L          K      + +  + K +   ++     
Sbjct: 437 DYNLNIPCYIAAKQESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNTLFKKSDK 496

Query: 533 ESFVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           E +     +    K    +            S    +     F   +P  +P T +  E 
Sbjct: 497 EGYYALKTECENIKDYITQSLEYQTFHASVLSAFDRLELFTTFNDLEPGFNPKTLI--ES 554

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAY 615
           +    L E+E +  L+    Y  F    +  + D +
Sbjct: 555 VCSKVLKEFEKIEILDKYGAYQLFKDYYNEVLQDDW 590


>gi|260664498|ref|ZP_05865350.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
 gi|260561563|gb|EEX27535.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
          Length = 550

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/583 (18%), Positives = 217/583 (37%), Gaps = 81/583 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   +   +W  A +L G+   +++   IL F   R L    E          +  G S 
Sbjct: 2   SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGESI 61

Query: 67  ID--------------LESFVKVAGYSFYNTSEYS---------------LSTLGSTNTR 97
            D              LE      GY+      ++                  L     +
Sbjct: 62  NDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121

Query: 98  NNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N   +   + S + + +F D +   +       ++A  + KI +    IE + D     +
Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIE-YKDENGKDI 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE+LI +F +   +   +F TP +V  +   L+     A  K  P     +YDPTC
Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVT----ANLKGEPEEFE-VYDPTC 235

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V       K P ++  +GQE    T+ +    +++  +E       + 
Sbjct: 236 GSGSLLLTVQGEV----PGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEF-----TNI 286

Query: 275 NIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           ++    TL  D   G            F   ++NPP+   W+ +++ + K+ +    G+ 
Sbjct: 287 HLSNADTLEADWPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKL-KDPRFSAYGKL 345

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P     +     F++H    L    +  G  AIVL    LF G A   E  IR+ ++E 
Sbjct: 346 AP----KTKADYAFVLHGLYHL----SPEGTMAIVLPHGVLFRGAA---EGVIRQNIIEK 394

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP +LF+  +I T + +    +  +    +  I+A+  +   +N    +  +
Sbjct: 395 NYLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEKGKN----QNKL 447

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL--E 499
            ++   +I+  Y+ RE+  K++   +          + + R +          L ++  E
Sbjct: 448 TEENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIPRYVDTFEPEPPVDLGKVADE 507

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
            +   +K++   +     + +            + F+    K+
Sbjct: 508 LEEVNQKIAENKKELLGMLKELTTDDDDLRAQLDKFISVFEKN 550


>gi|219850152|ref|YP_002464585.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485]
 gi|219544411|gb|ACL26149.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485]
          Length = 537

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 168/479 (35%), Gaps = 64/479 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             TG+       +W+ A  L G     ++  V+L    L+ +  A E  + A  E   A 
Sbjct: 16  NTTGATVGYEAELWQMANALRGSMDAAEYKHVVLGLIFLKYISDAFEE-QHARLEAERAQ 74

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
           G    D + +  V    F+   E   +   +   +       ++  + I   +     + 
Sbjct: 75  GADPEDPDEYRAV--NVFWVPPEARRAHRNARVKQPTIGRLVDDAMAGIERDNPALTGVV 132

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
              D    + R      L ++      I +  +      V+  + E    +F S      
Sbjct: 133 PKNDDRPVLDR----QHLGRLIDLIGTIRVGDEEARAKDVLGRVDEEGRSQFASAEGTQR 188

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
               TPR VV L    L           P     + DP CG+ G    ++  +       
Sbjct: 189 GALTTPRCVVKLPVERL----------DPYRG-RVDDPCCGSAGMFVQSVEFIRAHANGN 237

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +  K    +  +GQE    T  +    + IR ++          I  G T   D F   
Sbjct: 238 GNGGKTGADISIYGQESNYTTWRLAKMNLAIRGIDG--------QIAHGDTFHNDRFPDL 289

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + L+NPPF  K    +   +         R+  G+P + + +  ++  + + L    
Sbjct: 290 KADFILANPPFNVKDWGGERLRDD-------KRWKYGVPPVGNANFAWVQRIIHHL---- 338

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI- 409
              G A  VL++  + + R  SGE EIR+ ++E DL++ +VALP      T I   LW  
Sbjct: 339 APTGYAGFVLANGSMSSNR--SGEGEIRKHIIEADLVDCMVALPGRRCSATQIPACLWFS 396

Query: 410 ---------LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                         +  RRG V+ I+A  +   +    +    + D+   +I D   + 
Sbjct: 397 ARDTSGRGGFGPHPSRNRRGHVRFIDARTMGCMV---DRTHCDLTDEDITKIADTSHAW 452


>gi|317182738|dbj|BAJ60522.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 820

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 129/643 (20%), Positives = 244/643 (37%), Gaps = 72/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+   
Sbjct: 51  NNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 440

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIATKQESEKDLFALINSHKASYLPKNEIEAYAPYFKVFKELKNTLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           E +     +    K L  +           ++    +     F   +P  +P T +  E 
Sbjct: 501 EGYYALKTECENIKDLITQSLEFQAFHASVSNAFDRLNLFETFNHLEPGFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|315445330|ref|YP_004078209.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315263633|gb|ADU00375.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 810

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 111/521 (21%), Positives = 209/521 (40%), Gaps = 77/521 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L   +WK+ ++L G    + +   IL    ++ +    +   +++ +  +  GGS 
Sbjct: 4   KKSDLYTSLWKSCDELRGGMDASQYKDYILTLLFVKYVSDKAKADPNSLID--VPAGGSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSST- 123
            D+                  L+  G     + +   IA+ ++    + + +  DF+   
Sbjct: 62  DDM------------------LAAKGDKEIGDRMNKIIAALAEANGLQKVIDLADFNDEE 103

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L  +   F+ ++        D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMQDRLSALVGIFNTLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++          S    +T+YDPTCG+G  L              + P  +
Sbjct: 164 AEVSRILAKVV------GISASTKQDQTVYDPTCGSGSLLLKVA---------AEAPRGI 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE +  T A+    M++   E         +I++G T++   FT     + F + +
Sbjct: 209 TIYGQEKDNATWALSRMNMILHGNE-------VADIRKGDTITSPQFTKNDQLRSFDFAV 261

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K   +         + + GRF  G P   +G   FL+H+   L+      G+ 
Sbjct: 262 ANPPFSVKSWSNGL-------DKDYGRFEFGKPPEKNGDYAFLLHVLKSLK----STGKG 310

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++L    LF G A   E+ IR  LL+   I  I+ LP +LF+ T I   + +L      
Sbjct: 311 AVILPHGVLFRGGA---EARIRTELLKRGYIRGIIGLPANLFYGTGIPACIVVLDKENAA 367

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG- 474
            R G V +++A+  +    N+ +    +      +++D++  + E  ++SRM+       
Sbjct: 368 GRTG-VFMVDASKGFIKDGNKNR----LRSQDIHKVVDVFNKQTEVDRYSRMVPLTEIAD 422

Query: 475 ---YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH 511
                 + + R +  S   D   L A L   I  R L  L 
Sbjct: 423 PKNDYNLNIPRYIDSSEPEDIQDLHAHLHGGIPERDLDALS 463


>gi|303244599|ref|ZP_07330932.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanothermococcus okinawensis IH1]
 gi|302485025|gb|EFL47956.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanothermococcus okinawensis IH1]
          Length = 539

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 113/552 (20%), Positives = 206/552 (37%), Gaps = 78/552 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------ 56
           +       L   +W +AE L G    + +  ++L    L+      E  R  +       
Sbjct: 5   KKQEMLKKLEKTLWGSAEKLRGSVDPSRYKDIVLGIIFLKYASDMFEERRRELIDLSKNP 64

Query: 57  ------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIA 105
                 E      G   D E ++    +     S +      + N       ++    + 
Sbjct: 65  KSDYYCETEDELIGLLEDNEEYISENVFYVPEQSRWDYLIKNAKNPNIAKLLDDAMILLE 124

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLI 163
             +   K +       + I   EK G L  +  N +  E   + D     V   IY + +
Sbjct: 125 KHNSKLKGVLPKEYVRAEIPH-EKLGALLDLFNNINYKEFIENKDESIGDVFGTIYGYFM 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F  ++ +   +F TP  +V L   L+             +   +YDP CG+GG    +
Sbjct: 184 RNFSQKLGQKGGEFFTPECIVKLLVELVEP-----------LRGRIYDPACGSGGMFVQS 232

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V +   +      L  +GQEL      +C   + I RL  D        I+QG TLS
Sbjct: 233 SKFVKEYLKNGNGID-LAIYGQELNSSNVRICKMNLAIHRLSHDQ-------IKQGDTLS 284

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------DGSM 336
            D     +  Y ++NPPF  K + D+  +E +       RF  G+           + + 
Sbjct: 285 NDKHRDLKADYIITNPPFNYK-DYDQKVLEGD------VRFPYGIVPKKAENAKSGNANF 337

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L++ H    L    +  G AA ++++  L    AG  E EIR+ ++E  +++ I++LP  
Sbjct: 338 LWIQHFIYHL----SDNGIAAFIMANGSL---SAGGKEGEIRKKIIEEGIVDCIISLPNK 390

Query: 397 LFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +F+ T I   +W++   K       R+ +   I+A +++T +    + +   +D+Q ++I
Sbjct: 391 MFYTTQIPACIWVIDKNKENGRFRSRKWETLFIDAREIYTPV---ARNQNEFSDEQIKKI 447

Query: 453 LDIYV----------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            D+Y            ++   F ++        +   +L P R   I D    +    D 
Sbjct: 448 ADVYRCYRGEDGYPDYKDEKGFCKVATIDEIREQDY-ILTPGRYVGIADVEEDSEPFEDK 506

Query: 503 TWRKLSPLHQSF 514
             R    L + F
Sbjct: 507 MERLTKELSEHF 518


>gi|10954529|ref|NP_044168.1| type I restriction system protein M [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2496240|sp|Q60297|T1MH_METJA RecName: Full=Putative type I restriction enzyme MjaXP M protein;
           Short=M.MjaXP
 gi|1522675|gb|AAC37111.1| type I restriction enyzme ECOR124/3 I M protein [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 558

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 195/510 (38%), Gaps = 56/510 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--------- 60
              N +WK A+ L    +   +  V+L    LR L C     R  + E+           
Sbjct: 47  EFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEELSNPNSELYTE 106

Query: 61  --AFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                   ++ E F    G  +       +Y +  + S N    +++ I    +      
Sbjct: 107 DPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 166

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +D                  +   FS I    +     V   IYE+ + +F     +   
Sbjct: 167 KDVIPKIYAQSPLDNHDYSYLINKFSEISFGKEHRVKDVFGRIYEYFLGKFTEVEGKLGG 226

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TPR +  L   +L                +++DP CG+GGF   A+  +   G    
Sbjct: 227 KFYTPRSLTKLIVDVL-----------DVKGGSIFDPACGSGGFFVSALEKLEREGIDI- 274

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L  +GQ+ +P  + +    ++IR  E D R D         +   D F    F Y 
Sbjct: 275 --NELSIYGQDSDPMAYRLTKMNLIIRGAEGDIRID--------DSYHDDKFMDMTFDYV 324

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF      D + ++ +     +G     +P   + + ++++H            G+
Sbjct: 325 VANPPFNDSEW-DANRIKPDDPRLRIGNKKVPVPPNGNANYMWILHFIYH----TAPNGK 379

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  V+++  L    AG+ E EIR+ ++ENDL+  IVA P  LF+  ++   LW +   K 
Sbjct: 380 AGFVMANGAL---SAGNVEGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIRKEKP 436

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---------FSR 466
           +  +GKV  INA +L+  I    +++ I+ ++  ++I+D +   E+G+         F++
Sbjct: 437 DYMKGKVLFINAKNLYKQI---SRRQNILTEEHIKKIVDKFRMFESGEDEDKINELGFAK 493

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           +            +     +   ++  G+ 
Sbjct: 494 VATIDEIAKNGYVLTPGRYVGVKIEDDGIP 523


>gi|206577799|ref|YP_002240753.1| type I restriction-modification system, M subunit [Klebsiella
           pneumoniae 342]
 gi|206566857|gb|ACI08633.1| type I restriction-modification system, M subunit [Klebsiella
           pneumoniae 342]
          Length = 814

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 100/524 (19%), Positives = 196/524 (37%), Gaps = 67/524 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +    +     +    +  G S 
Sbjct: 4   KKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKYKGDPDGII--LIPKGASF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
            D+ +                          + +   I      ++ K + ++ DF+   
Sbjct: 62  DDMVALKNDKE------------------IGDKINKIIRKLAEENDLKGVIDEADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMIDRLTKLVGIFEGLDLSSNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++                T+YDPTCG+G  L    +              L
Sbjct: 164 AEVSRILAKVI------SITPDTPQDATVYDPTCGSGSLLLKVSDETR---------RGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNP 299
              GQE++  T A+    M++     +    + +         K+     + F + ++NP
Sbjct: 209 SIFGQEMDNATSALARMNMILHN---NATAKIWQGNTLSDPQWKEANGKLKAFDFAVANP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K          + K     RF  G+P   +G   FL+H+   L+      G+ A++
Sbjct: 266 PFSNKNWTSGL----DPKKDPFERFVWGVPPEKNGDYAFLLHIIKSLK----STGKGAVI 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++       R+
Sbjct: 318 LPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRK 374

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFG---- 474
           G + +I+A+  +    N+ +    +      +I+D++   R    +SRM+          
Sbjct: 375 G-IFMIDASRGFIKDGNKNR----LRSRDIHRIVDVFNHQRTVSGYSRMVPLSEIASEQN 429

Query: 475 YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
              + + R +      D   L A L+  I  R +  L   + + 
Sbjct: 430 NYNLNIPRYIDGGEPEDLHDLTAHLQGGIPARDVDALQDYWRVF 473


>gi|300313843|ref|YP_003777935.1| Type I restriction-modification system methyltransferase subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300076628|gb|ADJ66027.1| Type I restriction-modification system methyltransferase subunit
           protein [Herbaspirillum seropedicae SmR1]
          Length = 860

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/505 (20%), Positives = 190/505 (37%), Gaps = 56/505 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREKYLAFG 63
           +   LA  IW +A  +    +  ++   IL F   + L   LE     +   +E      
Sbjct: 2   NKQQLAAKIWASANQMRSKIEANEYKDYILGFIFYKYLSDKLERFAVSQDFSKEDIQGLS 61

Query: 64  GSNIDLESFVKV-AGYSFYNTSEY-SLSTLGST----NTRNNLESYIASFSDNAKAIFED 117
             + ++ +F K   GY     + + +   LG      N R  L ++      N K +F+ 
Sbjct: 62  EDDEEIVNFFKSNLGYFISYPNLFSTWLALGGDFEVANVRVALSAFSRLIHPNHKRLFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K           +  + +    I +      D V+  IYE+LI  F + 
Sbjct: 122 I-FKTLETGLSKLGESAASQTKAISALLQLIKDIPMDGRQGYD-VLGFIYEYLISMFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                 +YD T G+G  L +    +A 
Sbjct: 180 AGKKAGEFYTPHEVSVLMSEIIAHHLKDRKTIQ------IYDSTSGSGSLLLNIGQAIA- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
              H      +    QEL+  T+ +    +++R +        + +  +      D    
Sbjct: 233 --KHMVDKDNIKYFAQELKENTYNLTRMNLVMRGILPSNIVTRNADTLEDDWPYFDDQDP 290

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +        +SNPP+ +KW+ +    +         RF  GL   S     FL+H  
Sbjct: 291 VNSYNPLYLDAVVSNPPYSQKWDPEHKEAD-----PRYARF--GLAPKSKADYAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E  IR+ L+EN+ +E I+ LP+++FF T I
Sbjct: 344 YHLK----PDGIMAIVLPHGVLFR---GGEEGAIRKTLIENNHLETIIGLPSNIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +L  ++       V +++A+  +        K   +     ++I D+   R N  
Sbjct: 397 PTIILVLRQKRESS---DVLIVDASKGFAK----EGKNNKLRACDIKKIADVVTGRLNVP 449

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMS 487
            +SR++       +   +  P  + 
Sbjct: 450 GYSRLVPKAELQAKDYNLNIPRYVD 474


>gi|30995437|ref|NP_439439.2| type I modification enzyme [Haemophilus influenzae Rd KW20]
          Length = 576

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 194/558 (34%), Gaps = 88/558 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 41  LNXLDEKLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 100

Query: 60  LAFGGSNIDLE-----------SFVKVAGYSFYNTSEYSLSTLGSTNTRN---------- 98
           L     + + E                A   F+  +      L   +  N          
Sbjct: 101 LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGK 160

Query: 99  ---------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    +    I   ++  K + +     +      +  ++     +F+    + + 
Sbjct: 161 FSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEP 220

Query: 150 V---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           V      ++ ++YE+ + RF     + +  + TP+ +V L   +L           P   
Sbjct: 221 VHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML----------EPYSG 270

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ 
Sbjct: 271 -RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDY 326

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D             + ++     K+  + ++NP F  K   ++   +         R+  
Sbjct: 327 D------FGKYNADSFTQPQHIDKKMDFIMANPHFNDKEWWNESLADD-------PRWAY 373

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 374 GTPPKGNANFAWLQHMIYHL----SPNGKIALLLANGSM--SSQTNNEGEIRKAIINADL 427

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 428 VECMVALPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 482

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I D   + +          F +             VL P R     ++       
Sbjct: 483 DDIAKIADTLHAWQTSDGYEDQAAFCKSATLEEIKNNDF-VLTPGRYVGTAEQEDDGVPF 541

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 542 AEK-MQNLTALLKEQFAK 558


>gi|197336572|ref|YP_002157415.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
 gi|197315275|gb|ACH64723.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
          Length = 515

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 95/486 (19%), Positives = 187/486 (38%), Gaps = 54/486 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +  G  A   + +W +A  L G  + +++   +L    ++ +  +    +  ++E   
Sbjct: 1   MVKNVGDKA-FFDTLWDSAVALRGALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVA 59

Query: 61  A----FGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAK 112
                + G +I+     + A   F+   E     L      TN    L+  + +  DN  
Sbjct: 60  DANHDYYGMDINDPDLYE-AENVFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNS 118

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVS 171
            +         + ++  + L  ++      +  +  +     V+   YE  + +F     
Sbjct: 119 QLKGMLYRGFGLLKIPSSKLG-ELIDLLGKLTFNSKEHRSADVLGQAYEFFLGKFALAEG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TP  +V     ++                 LY+P  G+GG +  +   +   G
Sbjct: 178 ASAGAFYTPESIVSTIVEVIAPTKGQ-----------LYEPAIGSGGMVVCSEKFMERNG 226

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + IR L+ D         +   TL  DL    R
Sbjct: 227 GERG---DISVYGQEYTHTTWKMAAMNLTIRGLDFD------LGKENADTLLNDLHKDLR 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF ++                  R+  G P  S+ +  ++ H+   L    N
Sbjct: 278 ADYIMANPPFNQEKWGAAKVAGDV-------RWKWGQPSDSNANYAWIQHMLYHL----N 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRA +V+++  +      + E  IR+ ++E+DL+E +VALP  LF  T I + ++  +
Sbjct: 327 ETGRAGVVMANGAM--TSTANNEDAIRKAIIEDDLVECMVALPPKLFINTQIPSCIFFFN 384

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF----SRM 467
             K  +R+G+   I+A  L    R E + + + +++   +I + Y +     F    S+ 
Sbjct: 385 KNK--KRKGETLFIDARHLG---RLESRAQLVFDEEHIMEIANTYHAWAKTDFAEKDSKY 439

Query: 468 LDYRTF 473
           +D   F
Sbjct: 440 VDIAGF 445


>gi|15789429|ref|NP_279253.1| RmeM [Halobacterium sp. NRC-1]
 gi|10579755|gb|AAG18733.1| type I restriction modification enzyme, M subunit [Halobacterium
           sp. NRC-1]
          Length = 499

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 129/531 (24%), Positives = 215/531 (40%), Gaps = 38/531 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   L + ++K A+ +      TD+ + ILP    + +    E  R  + E+Y    
Sbjct: 1   MSLTLDELDSHLFKCADIIRDAVDPTDYKEYILPLVFYKAISDEYEQEREEIVEEYGEDF 60

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             N +L     V     +N        +      NN  +     + +   IF + +F   
Sbjct: 61  ADNANLYDVPIVPEGHRWNDLRQESENVDEAI--NNAFTEFTQANPDLSGIF-NANFMEA 117

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
               +    L K+ ++ S  +L  D+VP  ++   Y  L+R F  E  +    F TP  +
Sbjct: 118 GGLTDD--RLIKLVEHLSTYDLDRDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPHI 175

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   L+ D  D           T +DPT G+GG LT+A  +  +  +    P  L   
Sbjct: 176 VQLCVRLVDDFAD---------GMTFHDPTVGSGGMLTEAAKYYRE--AQGGDPSKLTFT 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE+ P+  A+    + +  L  +  R         S    D    +RF   L+N PF  
Sbjct: 225 GQEINPDIAAIARMNLSLHTLNGEIER----GDSLASPGFTDGDDLERFDRVLANFPFSA 280

Query: 304 KWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNG---GGRAAI 358
            W KD      + ++ + GRF     LP+   G   F+MH+A +L+ P  G   GG+AAI
Sbjct: 281 DWAKD------DLQDDQYGRFDWHTKLPRADRGDYAFIMHIAEQLKEPDCGDESGGKAAI 334

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF       E   R+ +LENDL+EAIV LP +LF   +I + + +L+  K  +R
Sbjct: 335 VIPHGVLFR----KHEQRYRQPMLENDLVEAIVGLPENLFQNNSIPSAILVLNTDKPADR 390

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
            G+VQ I+A D   +   E   +  + DD    I++ +       + SR +         
Sbjct: 391 EGEVQFIHAAD--EAFYEELSNQNELTDDGLDHIVENFDDWTTEERVSRTVGIEEIEEND 448

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             +   L +     +  +   E     R+L    +     + + M    Y 
Sbjct: 449 FNLNIALYVDTTEPEEDIDVNEELAELRELQAEREEIESRMTEHMEALQYE 499


>gi|229542843|ref|ZP_04431903.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229327263|gb|EEN92938.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 854

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 196/541 (36%), Gaps = 68/541 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-----------AV 55
           ++  +   +W  A +L G    + +   +L     + L      T              +
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETFKVASGIGQMSELEL 62

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEY------------SLSTLGSTNTRNNLESY 103
            E Y        ++   +      +Y + EY                    ++ N+ E  
Sbjct: 63  VEAYTKAKAEYGEMLEQMIQNVLGYYVSPEYLYQTWIKDINSGDFEVQKVIDSLNHFERT 122

Query: 104 IA--SFSDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           IA    SD+ + +F     D + T       E++  +  +   F+ + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTLDLTDTALGSNLNERSKNIKALILLFADLNM-VALQKGDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   ++    D         I+++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIVARTSD---------IKSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+            L  +GQE    T+ +    +L+  +  +     + + 
Sbjct: 233 GSLLLTVGKHL-----DEDAQKNLSYYGQEKNTATYNLTRMNLLLHGVRPEKMTIKNGDT 287

Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                        +  +F   + NPP+  K          + +    G     LP  S G
Sbjct: 288 LSQDWPEDPERPNEGVQFDAVVMNPPYSAKNWNRSGLKVSDPRFEVAG----VLPPDSKG 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L       G  AIVL    LF G A   E EIR+ LL+ + I+AI+ LP
Sbjct: 344 DFAFLLHGLFHL----GQNGTMAIVLPHGVLFRGSA---EGEIRKRLLQKNYIDAIIGLP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           ++LF  T I   + IL   +  +    V +I+A+  +  +     K+ ++ +    +I+D
Sbjct: 397 SNLFTNTGIPVVVIILKKNRKFD--DPVLIIDASHSFIKV----GKQNVLQEKDIAKIVD 450

Query: 455 IYVS-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADITWRKLSPL 510
            YV  RE   +S +            +  P  +    ++      A L   I  + +  L
Sbjct: 451 TYVERREEEGYSHLATREEIMENEYNMNIPRYIQANEEEIPHDVDAHLLGGIPQKNIDDL 510

Query: 511 H 511
            
Sbjct: 511 K 511


>gi|154685169|ref|YP_001420330.1| type I restriction-modification system methyltransferase subunit
           like protein [Bacillus amyloliquefaciens FZB42]
 gi|154351020|gb|ABS73099.1| type I restriction-modification system methyltransferase subunit
           like protein [Bacillus amyloliquefaciens FZB42]
          Length = 523

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 105/552 (19%), Positives = 210/552 (38%), Gaps = 67/552 (12%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   +   S+   +W +A  L G  + +++  V+L    L+      E  ++ + ++ 
Sbjct: 1   MAKKKDTKEKSMEETLWDSANKLRGSVEASEYKHVVLGLIFLKFASDKFEERKAELLDEG 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAK 112
                  +D+  F       FY +     S L     + ++   I          +   K
Sbjct: 61  ---KEKYVDMVEFY-TMKNVFYLSETSRWSYLVENAKQEDIALKIDTALFTVEKNNPALK 116

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               D  +S     + K   L     N + I          ++  IYE+ + +F     +
Sbjct: 117 GALPDNYYSRLNLDVSKLASLIDTINNINTI----KDKQQDIVGRIYEYFLSKFALAEGK 172

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP+ +V+L   +L                 +YDP CG+GG    ++  +    S
Sbjct: 173 GKGEFYTPKSIVNLIAEMLEPYKG-----------KIYDPACGSGGMFVQSVKFIE---S 218

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H      +  +GQE    T+ +    + IR + +      +       T   D     + 
Sbjct: 219 HQGNKKDISIYGQEYTTTTYKLAKMNLAIRGISA------NLGETAADTFFNDQHKDLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF +K  + ++ +  + +       G  +P   + +  +++++ +KL    + 
Sbjct: 273 DFIMANPPFNQKQWRAENELTDDPRWA-----GYEVPPRGNANYAWILNIVSKL----SE 323

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  +L++  L     G  E +IR+ L+ENDL+E+I+ LP ++F+ TNI+  LWIL+ 
Sbjct: 324 NGVAGFLLANGAL---SGGGDEYKIRKKLIENDLVESIIVLPQNMFYTTNISVTLWILNK 380

Query: 413 RKT-------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            K                R  +V  ++  ++        KK    ++D   ++ +IY + 
Sbjct: 381 NKKARTIDQNGSLKKYRNREKEVLFMDLREMGVPF---EKKYTQFSEDDITKVTNIYHNW 437

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL---DKTGLARLEADITWRKLSPLHQSFWL 516
           +   +                   +   F L        A  + DI + +   L QS ++
Sbjct: 438 QQTDYETKYQNIPEFSYSATFEEVVNKDFSLVPSKYIEFANRDEDIDFDEKMKLIQSEFV 497

Query: 517 DILKPMMQQIYP 528
           D+LK        
Sbjct: 498 DLLKAEEDSKKD 509


>gi|91772524|ref|YP_565216.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91711539|gb|ABE51466.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 568

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 186/519 (35%), Gaps = 92/519 (17%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           MT+            +WK A+ L  +    ++  V+L    L+ +  A E  ++ +    
Sbjct: 1   MTDIEQEFFKEFETKLWKAADKLRSNMDVANYKHVVLGLIFLKYVSDAFEERQNELVELF 60

Query: 56  ------------REKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLG------ 92
                       RE Y +       +   +++  Y      F+         L       
Sbjct: 61  KKDDDENIYYLPREDYSSTEEYQHAIAEELEIRDYYAEKNVFWVPKTARWDILKEKSVLS 120

Query: 93  -STNTRNNLE------SYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKN 139
            +T    N +        ++   DNA    E  +       +        +  L  +  N
Sbjct: 121 LNTVIWQNEQGKDVKLKSVSWLIDNALDEIEKANPKLKGILNRIGQYQLDSEKLIGLINN 180

Query: 140 FSGIELHPDTVPD--------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           FS    H     D         ++ ++YE+ + +F     +    + TP+ +V L   +L
Sbjct: 181 FSNTRFHHPEFNDKKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML 240

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQE 246
                            +YDP  G+GGF   +   + +  +       +    +  +GQE
Sbjct: 241 EPYKG-----------RVYDPAMGSGGFFVSSDKFIENHANVKHYNASEQKKQISVYGQE 289

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    M IR +      D +   +   +   D     R  + ++NPPF  K  
Sbjct: 290 SNPTTWKLAAMNMAIRGI------DFNFGKKNADSFLDDQHPDLRADFVMANPPFNMKEW 343

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +   +         R+  G P  ++ +  ++ H+ + L       G  A++L++  + 
Sbjct: 344 WHEKLADD-------PRWKYGTPPKNNANFAWMQHMLHHL----APTGSMALLLANGSM- 391

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-----TEERRGK 421
                + E +IR+ L+END++E +VALP  LF  T I   +  L+  K        R G+
Sbjct: 392 -SSNTNNEGKIRKTLVENDIVECMVALPGQLFTNTQIPACICFLTKDKAAKDDKRNRHGE 450

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +  I+A +L      + +  R   D+  ++I D + + +
Sbjct: 451 ILFIDARNLGFM---KDRVLRDFKDEDIQRIADTFHTWQ 486


>gi|254172724|ref|ZP_04879399.1| type I restriction-modification enzyme, M subunit [Thermococcus sp.
           AM4]
 gi|214033653|gb|EEB74480.1| type I restriction-modification enzyme, M subunit [Thermococcus sp.
           AM4]
          Length = 523

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/529 (21%), Positives = 208/529 (39%), Gaps = 69/529 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---------ECALEPTRSAVRE 57
           +   L   + K A+ +                   + +             E       +
Sbjct: 20  TREELERVLKKAADLIRTRVD-------------YKYILLLLFLKRLSDEWEKEFEEYVK 66

Query: 58  KYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRNNLESY------IASFSD 109
           K +  G      E         Y+     EY    L   +  N  ++       +A  + 
Sbjct: 67  KLMEEGLDRKTAEELALQDKEAYTINYPPEYLWRKLREKDIENLPQNLSQALKKLAELNP 126

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N + + + FDF   +   + A +L ++ + FSG+ L        V+ + YE ++R F  +
Sbjct: 127 NLRGVVDRFDFMEFMLHRDNAEILRQLFELFSGLNL--KNASPDVLGDAYEWILRYFAPQ 184

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            ++   +  TPR+V+ L   +L           P     +YDP  G+GG L  A  +V +
Sbjct: 185 KAKE-GEVYTPREVIRLLVEIL----------KPKPGEEVYDPAMGSGGMLIGAYLYVKE 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                +    L  +GQE+ P T+A+    M++  ++S            G TL +  F  
Sbjct: 234 KHGESEAKK-LFLYGQEVNPTTYALAEMNMILHGIKSPKLAV-------GDTLLRPAFKE 285

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               KRF+  ++NPP+ +    +    + E K     RF  G P  +     ++ H+   
Sbjct: 286 GNKLKRFNVVIANPPWNQDGYGEATLKKAEFKEE---RFKYGYPPNNSADWAWIQHMLAS 342

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                +  GR  IV+ +  LF G A   E +IR  +L++DL+EA++ LP  LF+ T    
Sbjct: 343 ---ARDEDGRVGIVIDNGALFRGGA---EKKIRAKVLKDDLVEAVILLPEKLFYNTGAPG 396

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + I +  K  ERRGKV  INA+  +     E +K   + D   R+I+D +   E+   F
Sbjct: 397 AIMIFNRNKPTERRGKVLFINASQEYEK-HPEVRKLNRLGDGHIRKIVDAFEKFEDVEGF 455

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +R+++          +   L   ++        ++    W +L  +++ 
Sbjct: 456 ARVVELDEIKENDHNLNVTL---YVFPMEEEEEIDVKAEWEELKRINEE 501


>gi|210135698|ref|YP_002302137.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210133666|gb|ACJ08657.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 816

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 127/636 (19%), Positives = 238/636 (37%), Gaps = 76/636 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KARN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G     + L   IA  ++  + K   +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGDKEIGDKLNKIIAKIAERNDLKGAIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDALSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGQKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +        ++    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPLFIENG-MLKTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 269 FSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLKT----TGKGA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 325 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAHA 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + D   ++++D + + +E   +S+M+        
Sbjct: 382 RKG-VFVIDASKDFKKDGNKNR----LRDQDVQKMIDTFNAYKEIPYYSKMVSLEEISAN 436

Query: 477 RIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +  P  ++   +       L          K      + +    K +   ++     
Sbjct: 437 DYNLNIPRYIAAKQESEKDLFALINSHKASYLPKNEIKAYAPYFQAFKELKNTLFKKSDK 496

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRADPVTDVNGEW 581
           E +     +    K    ++   ++F  + +NAF R D         P  +P T +  E 
Sbjct: 497 EGYYALKTECENIKESITQSLEYQTFHASVLNAFDRLDLFETFNHLKPGFNPKTLI--ES 554

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAY 615
           +    L E+E +  L+    Y  F    +  + D +
Sbjct: 555 VCQKVLKEFEKIEILDKYGVYQLFKDYYNEVLQDDW 590


>gi|156976837|ref|YP_001447743.1| type I restriction-modification system specificity subunit [Vibrio
           harveyi ATCC BAA-1116]
 gi|156528431|gb|ABU73516.1| hypothetical protein VIBHAR_05613 [Vibrio harveyi ATCC BAA-1116]
          Length = 873

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/548 (19%), Positives = 211/548 (38%), Gaps = 66/548 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
             +++ + I     L+R+         A V E   A    +           + FY   +
Sbjct: 9   DQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQFDFYVPEK 68

Query: 86  YSLSTLGS--TNTRNNLESYIASFSDN-----AKAIFEDFDFSSTIARLEKAG-LLYKIC 137
                L    TN  + L   + +  +       + + +  +F+  + +       L +  
Sbjct: 69  ARWENLKHLKTNAGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIPDERLVEFI 128

Query: 138 KNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           ++F  I L  +      ++   YE+LI+ F     +   +F TP +VV L   +L     
Sbjct: 129 QHFDSIPLSNEDFELPDLLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVEIL----- 183

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P     +YDPTCG+GG L  + N+V + G + K   +L   GQE    T ++C 
Sbjct: 184 -----EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLL---GQEDNGGTWSICK 235

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDA 311
             M++             +I+ G TL+  L        + F   ++NPPF + ++K    
Sbjct: 236 MNMILHG-------SGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKKADMQ 288

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           +++         F P   K   G ++F+ H+   L+      G+AA+V+    LF    G
Sbjct: 289 LKE-----RFNTFMPESGK--KGDLMFVQHMVASLKA----NGKAAVVMPHGVLFR---G 334

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           + E   R+  +E  ++EA++ LP  LF+ T I   + +++     E R  V  INA   +
Sbjct: 335 AEERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVINKG-GRENRDSVLFINADREY 393

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENG-------KFSRMLDYRTF--GYRRIKVLR 482
              +N    +  +  +   +I  +Y +           K++R++             + R
Sbjct: 394 REGKN----QNSLRPEDIEKITSVYKAMLEDDKHPGVEKYARLVHKDELKREDYNFNIRR 449

Query: 483 PLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +  S   +   + A L   I  +++  L  ++  +    + + ++       F   + +
Sbjct: 450 YVDNSPAPEPQNVKAHLNGGIPTQEIDALQGTW--NDYPGLKESLFVPRANNEFQDFADE 507

Query: 542 SNEAKTLK 549
                +LK
Sbjct: 508 FEALSSLK 515


>gi|327401776|ref|YP_004342615.1| adenine-specific DNA-methyltransferase [Archaeoglobus veneficus
           SNP6]
 gi|327317284|gb|AEA47900.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Archaeoglobus veneficus SNP6]
          Length = 509

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 204/505 (40%), Gaps = 45/505 (8%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGSNIDLESFVK- 74
           + A+ +       D+   IL    L+RL    +     A++      G S  + E   K 
Sbjct: 22  QAADLIRTRV---DYK-YILVLLFLKRLSDEWKREYNEALKYLIEKEGLSREEAEELAKD 77

Query: 75  VAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           ++ + F    +Y+   L           +     +A  +   + + +  DF       + 
Sbjct: 78  ISFHRFMYPEKYTWEELRKNVNELPVKLSEALKLLAEKNPELQGVVDRLDFLEFTRHRDN 137

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +L ++ + FSG+ L      D ++ + YE ++  F  + ++   +  TP +VV L   
Sbjct: 138 FDILVQLFELFSGLNLG--RTSDSILGDAYEWIVGYFAPQKAKE-GEVFTPSEVVELIVK 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           ++          +P  + ++YDP  G    L  A ++V +     +    L  +GQE+ P
Sbjct: 195 IV----------APKPLESVYDPAAGYARMLIRAYDYVKEKYGEEEAKK-LFLYGQEVNP 243

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T+A+     ++  ++     +L       +   KD  + +RF   ++NPP+ +    + 
Sbjct: 244 TTYAIAKMNAIVHGIKD---INLVVGDTLKNPRFKDGESFRRFDVVIANPPWNQDGYGEV 300

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +  + E       RF  G P  +     ++ H+    +          +V+ +  LF   
Sbjct: 301 ELKKAEFYEE---RFKYGYPPNNSADWAWIQHMLASAKRC------VGVVIDNGCLFR-- 349

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
            G  E  IR+ +L +DL+E ++ LP  LF+ T     + I + +K EER+ KV  INA++
Sbjct: 350 -GGKEKTIRKAILMDDLLECVILLPEKLFYNTGAPGAILIFNKQKPEERKSKVLFINASN 408

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            +     E +K   + D+   +I++ Y   ++   F R++           +   L   +
Sbjct: 409 EYEK-HPEVRKLNRLGDEHIEKIVNAYREFKDVEGFCRVVSLDEIKENDYNLNVTL---Y 464

Query: 489 ILDKTGLARLEADITWRKLSPLHQS 513
           +  K  +  ++    W +L  + + 
Sbjct: 465 VFPKEEVEEIDVAREWEELKAIEEE 489


>gi|11500027|ref|NP_071277.1| type I restriction-modification enzyme, M subunit [Archaeoglobus
           fulgidus DSM 4304]
          Length = 508

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 205/518 (39%), Gaps = 44/518 (8%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E   +   L     + A+ +       D+   IL    L++L    +       +  +  
Sbjct: 8   EIETTKDELIRACKQAADLIRTRV---DYK-YILVLLFLKKLSDEWKREYREALKTLMEK 63

Query: 63  GGSNIDLESFVKVAGYS-FYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAIFE 116
           G    + +   K   +  F    +Y+   L           +     +A  +   + + +
Sbjct: 64  GVDEEEAKILAKDRSFHKFDYPEKYTWEELRKNVNELPVRLSEALKLLAEKNPELQGVVD 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             DF       +   +L ++ + FSG+ L      D ++ + YE LI  F  + ++   +
Sbjct: 124 RLDFLEFTRARDNFDILVQLFELFSGLNLG--RASDSILGDAYEWLIGYFAPQKAKE-GE 180

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP +VV L   ++           P  + ++YDP  G    L  A ++V +     ++
Sbjct: 181 VFTPSEVVELIVRIV----------DPKPMDSVYDPAAGYARMLIRAYDYVKEKYGEEEV 230

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L  +GQE+ P T+A+     ++  ++     +L       +   K+  T ++F   +
Sbjct: 231 RK-LFLYGQEVNPTTYAIAKMNAIVHGIKD---INLVVGDTLKNPRFKEGETFRKFDIVI 286

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+ +    +++  + E  +    RF  G          ++ H+    +       + 
Sbjct: 287 ANPPWNQDGYGEEELKKAEFYDE---RFRYGFTPKQSADWAWIQHMLASAKK------KV 337

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+ +  LF    G  E  IR+ ++E+DLIE ++ LP  LF+ T     + I + +K E
Sbjct: 338 GVVIDNGCLFR---GGKEGAIRKAVVEDDLIECVILLPEKLFYNTGAPGAIIIFNKQKPE 394

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
            R+GK+  INA++ +     E +K   + +    +I+  Y   ++G  F R++D      
Sbjct: 395 SRKGKILFINASNEYEK-HPEVRKLNRLGEKHIEKIVSAYREFKDGDGFCRVVDVEEVRK 453

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
               +   L   ++  +  +  ++    W +L  + + 
Sbjct: 454 NDYNLNVTL---YVFPQEEVEEIDVAKEWEELRGIERE 488


>gi|291529890|emb|CBK95475.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum 70/3]
          Length = 511

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 196/480 (40%), Gaps = 64/480 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +   +WK+A+ L G  +  ++  V+L    L+      +  R  + ++Y   G   +D  
Sbjct: 1   MEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFAGDKFDAQREMIAKQY---GEKFVDTV 57

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSST 123
           +F       FY   E   S +     ++++          I   +   K    D  +S  
Sbjct: 58  AFY-TKDNVFYLPPESRWSYIMENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSRL 116

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                K   L       +      D   + ++  IYE+ + +F     +G  +F TP+ +
Sbjct: 117 QLDTAKLASLLDEINRINT-----DDKENDIIGRIYEYFLSKFALAEGKGKGEFYTPKCI 171

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V+L   +L   D             LYDP CG+GG    +M  V    +HH     +  +
Sbjct: 172 VNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSMKFVE---AHHGNKKQVSIY 217

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE    T+ +C   + IR + +      +      +T + D     +  Y ++NPPF +
Sbjct: 218 GQEYTNTTYKLCKMNLAIRGISA------NLGETAANTFTNDQHKDLKADYIMANPPFNQ 271

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K  + ++ +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++ 
Sbjct: 272 KAWRAENELIDDPRWD-----GYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANG 322

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------- 415
            L +      E +IR+ L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K         
Sbjct: 323 ALSDDGT---ELKIRKQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEQNG 379

Query: 416 -----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                 +R  ++  ++   +        KK   + D  R ++  +Y + +   +    + 
Sbjct: 380 QLKRYRDREREILFMDLRQMGGPY---EKKYIELTDKDRAKVTSVYHNWQQEGYEETYEN 436


>gi|187736397|ref|YP_001878509.1| type I restriction-modification system, M subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426449|gb|ACD05728.1| type I restriction-modification system, M subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 853

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/535 (17%), Positives = 202/535 (37%), Gaps = 60/535 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L               +      
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSDKEVKFLKENDWTDDDLPHVT 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +   +++      ++    ++T     S   + +    L ++    + + K +F+ 
Sbjct: 62  EDDAETVDYIRSNVGYFISYKHLFSTWIDKGSDFNAADVTEALSAFSRLINPSHKKVFDK 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I +        V+  IYE+LI  F + 
Sbjct: 122 V-FATLETGLSKLGENSGARTKAIRDLLHLIKDIPMDG-RQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSLLMSEIVAAHLKDRQQI------KIYDPTSGSGSLLINIGKCVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
              +      +  + QEL+  T+ +    +++R +  +     + +  +      D    
Sbjct: 234 ---YMGGGDNIKYYAQELKENTYNLTRMNLVMRGILPNNIVTRNGDTLEEDWPYFDDNDP 290

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +        +SNPP+ + W       +         R+  GL         FL+H  
Sbjct: 291 VNTYDPLYVDAVVSNPPYSQSWNPADKESD--------PRYRFGLAPKGKADYAFLLHDL 342

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G   IVL    LF G     E  IRR L+E + I+AI+ LP ++FF T I
Sbjct: 343 YHLK----PDGIMTIVLPHGVLFRGGT---EGAIRRNLVEYNHIDAIIGLPANIFFGTGI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +L  ++       V +++A+  +  +     K  ++     ++I+D+  +R +  
Sbjct: 396 PTIIMVLKQKRENT---DVLIVDASKGFAKV----GKNNVLRACDIKKIVDVVSARADVE 448

Query: 463 KFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
           KF++++           + + R +  S   ++  + A +   I   +L+  H+ +
Sbjct: 449 KFAKVVSLDEIRGNDYNLNIPRYVDSSDKNERWDIFATMFGGIPLSELADFHEYW 503


>gi|315231357|ref|YP_004071793.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Thermococcus barophilus MP]
 gi|315184385|gb|ADT84570.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Thermococcus barophilus MP]
          Length = 515

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/538 (21%), Positives = 214/538 (39%), Gaps = 49/538 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T +   L   + K A+ +       D+   IL    L+RL    E       EK +  
Sbjct: 14  NKTVTREELERVLKKAADLIRTRV---DYK-YILLLLFLKRLSDEWEKEFEGYVEKLVKE 69

Query: 63  GGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRNNLESY------IASFSDNAKAI 114
           G      E         Y+    SEY    L   +     ++       +A  + N + +
Sbjct: 70  GLDRKTAEKIALQDKSAYTIAYPSEYLWRKLREKDIEKLPQNLSEALKKLAELNPNLRGV 129

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + FDF   +   + A +L ++ + FSG++L        V+ + YE ++R F  + ++  
Sbjct: 130 VDRFDFMEFMLHRDNAEILKQLFELFSGLDLR--NASPDVLGDAYEWILRYFAPQKAKE- 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   +L           P     +YDP  G+GG L  +  HV +     
Sbjct: 187 GEVYTPREVIKLLVEIL----------DPRPGEEVYDPALGSGGMLIGSYLHVKEKFGES 236

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           +    L  +GQE+ P T+A+    M+I  ++             G TL +  F      K
Sbjct: 237 EAKK-LFLYGQEVNPTTYAIAEMNMMIHGIKDAKLAV-------GDTLLRPAFKEGEKLK 288

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPP+ +    ++   + E +     RF  G P  +     ++ H+        
Sbjct: 289 RFDVVIANPPWNQDGYGEETLKKAEFREE---RFKYGYPPNNSADWAWIQHMLAS----A 341

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR  IV+ +  LF G A   E +IR  +++ DL+E ++ LP  LF+ T     + I 
Sbjct: 342 RDNGRIGIVIDNGALFRGGA---EKKIRSRIVKEDLLECVILLPEKLFYNTGAPGAIMIF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
           +  K +ER+GKV  INA+  +     E +K   + +    +I+  Y   E+   F+R++ 
Sbjct: 399 NKAKPKERKGKVLFINASLEYEK-HPEVRKLNRLGEKNIEKIVKAYEEFEDVEGFARVVS 457

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                     +   L +  + ++  +         +K++         I + + +  Y
Sbjct: 458 LDEIKENDFNLNVTLYVFPMEEEEEIDVKAEWEELKKINEELAEIDEKIEEYLRELGY 515


>gi|257051192|ref|YP_003129025.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940]
 gi|256689955|gb|ACV10292.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940]
          Length = 493

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 123/528 (23%), Positives = 209/528 (39%), Gaps = 38/528 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   L + ++K A+ +      T++   ILP    + +    E  R    E+Y    
Sbjct: 1   MSLTLDELDSHLFKCADIIRDAVDSTEYKDFILPLVYYKTISDNFEVQREKYVEEYGDEH 60

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +  ++     V     ++        +      +  ++   +     + +F     +  
Sbjct: 61  ANRPNIYDVPYVPDGYLWDDLRAVNENVDEA-INDAFDALREANDGEVEGVFRADYVAED 119

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
               ++   L ++ ++ S I+L  D+VP  ++   Y  L+R F  E  +    F TP  +
Sbjct: 120 ALTDDR---LTRLIEHLSTIDLDNDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPHI 176

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   LL   +D           T +DPT G+GG L +A  H  D       P  L   
Sbjct: 177 VELMVRLLAPFED---------GDTFHDPTVGSGGMLVEAATHYRD--EQGGDPSKLTFT 225

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE+ P+  A+    + I  L     R+ S    Q      +     +F Y L+N PF  
Sbjct: 226 GQEINPDIAAIAKMNLSIHGLSGRIEREDSLLRPQ----FTENGELTKFDYVLANFPFSA 281

Query: 304 KWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            W+KD      E ++   GRF     LP+   G   F+MH+A +L    N  G+AAIV+ 
Sbjct: 282 DWQKD------ELQDDTYGRFDWHEKLPRADRGDYAFIMHMAEQL----NETGQAAIVIP 331

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF       ES  R  +LENDL+EAIV LP +LF   +I + + +L+  K  ER G+
Sbjct: 332 HGVLFR----KHESRYREPMLENDLVEAIVGLPENLFQNNSIPSAILLLNTDKPAEREGE 387

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKV 480
           VQ I+A D   +   E   +  + D+    +++ +       + SR +           +
Sbjct: 388 VQFIHAAD--EAFYRELSNQNELTDEGVAHVVENFRDWTTEERVSRTVSIEEIRENDYNL 445

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
              L +     +  +   E   T R+L          + + M    Y 
Sbjct: 446 NIALYVDTTEPEEEIDVAEELATLRELQAERDEIEARMDQHMEALNYE 493


>gi|327470618|gb|EGF16074.1| site-specific DNA-methyltransferase [Streptococcus sanguinis SK330]
          Length = 407

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 168/426 (39%), Gaps = 48/426 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLIAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-------RNNLESYIASFSDNAKA 113
              G   + +         F+         + S           +     I   + + + 
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEEDNPSLEN 126

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L ++   F+ I+++       ++   YE+ I +F +   + 
Sbjct: 127 VLPQIYASPDLDK----RVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKR 182

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     +L                 +YDP CG+GG    +   + +   H
Sbjct: 183 GGEFYTPTSIVKTIVEILKPYRG-----------RVYDPACGSGGMFVQSAKFIEN---H 228

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L   GQE   +T  +    M+IR +++D          Q ++   DL    + +
Sbjct: 229 SGNINNLSVFGQESNADTWKMAKMNMVIRGIDAD------FGEHQANSFFNDLHPTLKAN 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF           +         R+  G P  S+ +  ++ H+ + ++      
Sbjct: 283 YIMANPPFNISNWGADKLQDD-------IRWKYGTPPNSNANYAWIQHMIHHMD---PSN 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L + ++G  E +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  
Sbjct: 333 GKVGLVLANGSLSSTQSG--EGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKN 390

Query: 414 KTEERR 419
           K ++ R
Sbjct: 391 KNKKER 396


>gi|188528306|ref|YP_001910993.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188144546|gb|ACD48963.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 820

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 133/643 (20%), Positives = 249/643 (38%), Gaps = 72/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            + +S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 51  NNTDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 108 KLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L         +    +++YDPTCG+G  L  A +     G        L
Sbjct: 168 SEVSL------LLSLLLGIDANTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 213

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 214 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D   ++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 273 FSLKNWTDGLNIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+  + L  +LF+ T+I   + +L       
Sbjct: 329 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGAIGLAPNLFYGTSIPACVIVLDKENARA 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V LI+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 386 RKG-VFLIDASKDFKKDGNKNR----LREQDVQKMIDAFNALKEIPYYSKMVSLEEISTN 440

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 441 DYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIEAYAPYFQVFKELKNTLFKKSDK 500

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINA---------FGRKDPRADPVTDVNGEW 581
           E +     +    K L  ++S  ++F  + +NA         F   +P  +P T +  E 
Sbjct: 501 EGYYALKTECQNIKDLITQSSEFQAFHASVLNAFDRLNLFETFDHLEPGFNPKTLI--ES 558

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 559 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 601


>gi|224282780|ref|ZP_03646102.1| putative type I restriction-modification system methyltransferase
           subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313139939|ref|ZP_07802132.1| type I restriction-modification system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132449|gb|EFR50066.1| type I restriction-modification system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 524

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 212/562 (37%), Gaps = 81/562 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYL 60
            ++   A  L+  +W  A DL G+   T F   IL     R L    +     +  E  L
Sbjct: 5   AKYQAQAGELSQKLWAIANDLRGNMDSTKFRNYILGTIFYRYLSERTKDYMQEILKEDGL 64

Query: 61  AFGGSNIDLESFVKVAGYSFYNT--------------------------------SEYSL 88
            +  +  D +    V  +S  +                                      
Sbjct: 65  TYEQAFADDDYRPVVEQWSIEHLGYIIRPENLFGELVRKIVRPDGDADRFNVEDYERAVN 124

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             +GST  + +  ++   F+D      +D D   T+A   +  L+ K+    S I+    
Sbjct: 125 ELIGSTMGQASEAAFSGLFND---MKLQDPDLGDTVA--ARTSLIAKVIVKISEIDFKLA 179

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+   Y  LI  F S+  + + +F TP     L   L     D          RT
Sbjct: 180 DSQFDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA--------RT 231

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D TCG+   L +   H+      H        +GQE    T+ +    ML+  ++   
Sbjct: 232 VGDCTCGSASMLLEVQKHLTTGRVGH-------FYGQENNATTYNLARMNMLMHGVDYQ- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 +I +G TL +D +   +    + NPP+  K++ +   ++    +G        L
Sbjct: 284 ----HFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDGNPALLDDPRYSG-----AGKL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
           P  S     F+ H+   ++   +  GR A++L    LF G A   E  IR++++++ + +
Sbjct: 335 PPKSHADYAFIEHMVYHMD---DNDGRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRL 388

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ L  +LF  T+I   L +L   K     G V  I+A+  +   +N    +  + D 
Sbjct: 389 DAVIGLAPNLFHGTSIPVCLLVL-KSKRNGNSGNVLFIDASKEFKPGKN----QNTLEDA 443

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADITW 504
             ++I++ Y +R +  KF+ + D          + + R +      +   LA +  D+  
Sbjct: 444 HIQKIVEAYKNRADVDKFAHVADMAEIEANGWNLNIPRYVDTFEEEEPVDLAAVRDDL-- 501

Query: 505 RKLSPLHQSFWLDILKPMMQQI 526
            K     +   +D ++ M+ Q+
Sbjct: 502 -KRIESEKKAAIDKVESMLHQL 522


>gi|317179715|dbj|BAJ57503.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 817

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 125/621 (20%), Positives = 239/621 (38%), Gaps = 74/621 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                    + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDK-----------------AR 46

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            + +S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 47  NNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFNDNT 103

Query: 125 ARLEKA---GLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              E       L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAIIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 269 FSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 325 VILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENACT 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 382 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISTN 436

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              + + R +      +K   A + +       K      + +  + K +   ++     
Sbjct: 437 DYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIKAYAPYFKVFKELKNTLFKKSDK 496

Query: 533 ESFVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           E +     +    K L  +           ++    +     F   +P  +P T +  E 
Sbjct: 497 EGYCALKTECENIKDLITQSLEFQAFHASVSNAFDRLNLFETFDHLEPGFNPKTLI--ES 554

Query: 582 IPDTNLTEYENVPYLESIQDY 602
           +    L E+E V  L+    Y
Sbjct: 555 VCSKVLKEFEKVEILDKYGVY 575


>gi|262375745|ref|ZP_06068977.1| type I restriction-modification system protein [Acinetobacter
           lwoffii SH145]
 gi|262309348|gb|EEY90479.1| type I restriction-modification system protein [Acinetobacter
           lwoffii SH145]
          Length = 920

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/739 (18%), Positives = 268/739 (36%), Gaps = 119/739 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L              +    A  
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFMFYKFLSDKEQSFLEGNDFAQSDIEALT 61

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFED 117
             +++   F+K   GY       +S            + R+ L ++      + K +F+ 
Sbjct: 62  EEDVETVEFIKNGIGYFIAYDDLFSTWLNKGLDFTVADVRDALSAFSRHIHSSHKKVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K           +  + +    I ++       V+  IYE+LI  F + 
Sbjct: 122 I-FKTLETGLSKLGDNSNSQTKAISDLLQLIKVIPMNNKQ-DYDVLGFIYEYLIGSFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        K+ P +   +YDPT G+G  L +  + VA 
Sbjct: 180 AGKKAGEFYTPHEVSVLMSEIIAHY----LKDQPEI--KIYDPTSGSGSLLINIGSSVA- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFT 288
              H      +  + QEL+  T+ +    +++R +        + +  +      +D   
Sbjct: 233 --KHVNDANKIKYYAQELKENTYNLTRMNLVMRGILPANIVARNADTLEDDWPFFEDNDP 290

Query: 289 GKRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +        +SNPP+ + W+      +  +K         GL   +     FL+H  
Sbjct: 291 INTYEPLYVDAVVSNPPYSQAWDPANKDADPRYKE-------FGLAPKTKADYAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G  AIVL    LF    G  E  IR  L++ + I+AI+ LP ++FF T I
Sbjct: 344 YHLK----PNGIMAIVLPHGVLFR---GGEEERIRTNLIKKNHIDAIIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + IL  ++       V +++A+  +        K   +     ++I+D  + R++  
Sbjct: 397 PTVIIILKQQRPTT---DVLIVDASKGFVK----QGKNNHLQASNIKKIVDAVIERKDVE 449

Query: 463 KFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           +FSR++  +        + + R +  S   +   +         +K    H ++W     
Sbjct: 450 QFSRLVTQKEIRDQGYNLNIPRYVDSSATAETWDIYATMFGGIPKKEIDAHAAYWKAF-- 507

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
           P ++Q         +V  +           +  K F+  F  AF      A+    + GE
Sbjct: 508 PQLRQDLFTESETPYVNLATTEISQAIHSHQDVKGFVTQFNTAF------ANFKDYLKGE 561

Query: 581 WI---PDTNLTEYEN------------VPYLESIQDYFVREVSPHVPDAY---------- 615
            I      ++ + EN            +P ++  Q Y        + D +          
Sbjct: 562 LIGKMESLHIAQQENVLSKDIFKRLADIPLVDKYQAYQA------LDDQWQGIAGDLEII 615

Query: 616 --------------IDKIFIDEKDKEI--GRVGYEINFN----RFFYQYQPSRKLQDIDA 655
                         I     D K+ E+  G VGY + F+    R   +      L+  + 
Sbjct: 616 QSEGLDAAKIVNPNIVIKKKDGKEHEVQEGWVGYVLPFDLVQQRLLSK--ELEALKAKER 673

Query: 656 ELKGVEAQIATLLEEMATE 674
           EL    A+I +L+E ++ E
Sbjct: 674 ELAEASAEIESLMESLSEE 692


>gi|328471218|gb|EGF42120.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 10329]
          Length = 544

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/563 (19%), Positives = 194/563 (34%), Gaps = 73/563 (12%)

Query: 1   MT---EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MT           + N  W   +   G      +   IL    ++ +        +  ++
Sbjct: 1   MTKDMNDKIQQKDINNAAWAACDTFRGAVDPAQYKDYILVMLFVKYISDVWNDHYAEYKK 60

Query: 58  KYLAFG---GSNIDLESFVKVAGY-----------------------SFYNTSEYSLSTL 91
           +Y          ++ E FV                            ++Y+  E      
Sbjct: 61  QYGDDDVRIRRKLERERFVLPMVELTEEVEDPATKEKKTVVTDTFLANYYSLLERKNEPN 120

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSG--IELH 146
                   LE    +     + +F + DF+S        ++   L  +  +F+   +++ 
Sbjct: 121 IGELINIVLEHIETANKAKLEGVFRNIDFNSEANLGKTKDRNRRLKTLLDDFNKPALDMS 180

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P  V + V+ N Y +LI RFGS+  + A +F TP  V  L   L           +P   
Sbjct: 181 PSRVSEDVIGNTYIYLIERFGSDAGKKAGEFYTPHKVSELVARL----------SAPKSG 230

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             + DP CG+ G L +A   V D             +G E+   T A+    M +   + 
Sbjct: 231 ARICDPACGSAGLLIEAARQVGDRN--------YSLYGMEVNGSTWALARMNMFLHGSDF 282

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             R +    +   + +  D     +F   ++NPPF        D  E         R+  
Sbjct: 283 -ARIEWCNTLTSPALVENDRL--MKFDNVVANPPFSLDKWGADDVTE-----DRYNRYWR 334

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP  S     F+ H+    E      GR A+V+    LF G A   E  IR+ L+E +L
Sbjct: 335 GLPPKSKADFAFISHMV---EAAVEKEGRIAVVVPHGVLFRGAA---EGRIRQKLIEENL 388

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRR 442
           ++A++ LP +LF  T I   + I    + +    E R  V  ++A+         GK + 
Sbjct: 389 LDAVIGLPGNLFPSTGIPVAILIFDRSREKGGANENRKDVLFVDAS--GKDHYQAGKNQN 446

Query: 443 IINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           I+ D+   +I+    +R E  K++ +  +         +  P  +    ++  +  +   
Sbjct: 447 ILLDEHLDKIVAAVTARNEVEKYAHLATFDEIKENDFNLNIPRYVDTFEEEIEIDIVAVQ 506

Query: 502 ITWRKLSPLHQSFWLDILKPMMQ 524
                L          +   +  
Sbjct: 507 AEITSLESELADVRSKMAALLKD 529


>gi|261838807|gb|ACX98573.1| type I R-M system modification subunit [Helicobacter pylori 51]
          Length = 816

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 131/643 (20%), Positives = 245/643 (38%), Gaps = 76/643 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                    + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDK-----------------AR 46

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+   
Sbjct: 47  NNTYSEIEVPKGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKNG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +D       +    +         + F Y ++NPP
Sbjct: 210 SIYGQEKDISTTALCKMNMILHN-SADADIAKGGSSTLSNPFFIKNGMLQTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 269 FSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 325 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENARA 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    N+ +    + +   ++++D + + +E   +S+M+        
Sbjct: 382 RKG-VFMIDASKDFKKDGNKNR----LREQDVQKMIDTFNALKEIPYYSKMVSLEEISAN 436

Query: 477 RIKV----LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +      P +     D   L          K      + +  + K +   ++     
Sbjct: 437 DYNLNIARYIPTKQESQKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNTLFKKSDK 496

Query: 533 ESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD---------PRADPVTDVNGEW 581
           E +     +    K L  ++   ++F  + +NA+ R +         P  +P T +  E 
Sbjct: 497 EGYYALKTECENIKDLITQSLEYQAFHTSVLNAYDRLNLFETFDNLEPGFNPKTTI--ES 554

Query: 582 IPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAYIDKIFID 622
           +    L E+E V  L+    Y  F    +  + D +    F D
Sbjct: 555 VCSKVLKEFEKVEILDKYGVYQLFKDYYNEVLQDDWFLLSFND 597


>gi|283778919|ref|YP_003369674.1| type I restriction-modification system, M subunit [Pirellula
           staleyi DSM 6068]
 gi|283437372|gb|ADB15814.1| type I restriction-modification system, M subunit [Pirellula
           staleyi DSM 6068]
          Length = 835

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/615 (18%), Positives = 224/615 (36%), Gaps = 77/615 (12%)

Query: 19  AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
            ++L G    + +   +L    L+ +                    +N+         G 
Sbjct: 51  CDELRGGMDASQYKDYVLVLLFLKYISDKY----------------ANVPYAPIEVPKGS 94

Query: 79  SFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAK-AIFEDFDFSSTIA-RLEKAGLLYK 135
           SF    +  ++  G+ +  +++    IA  +   + +   DF+ S+ +    EK   L  
Sbjct: 95  SF----KDMVALKGTKDIGDDINKKIIAPIAQANRLSDMPDFNDSTKLGSGKEKVDRLTN 150

Query: 136 ICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +   F    ++   +    D ++ + YE+L+R F +E  +    F TP +V  +   ++ 
Sbjct: 151 LIAIFENKSLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQII- 209

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                +         T+YDPTCG+G  L    +         +    +  +GQE +  T 
Sbjct: 210 ----GIKTAKTTGSTTVYDPTCGSGSLLLKVSD---------EAQTPVTLYGQEKDAATS 256

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDA 311
            +     ++  +   P   + +     +    D  + K F Y ++NPPF  K W    D 
Sbjct: 257 GLARMNTILHNM---PTALIEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDKRWSTGLDP 313

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
               H      RF  G+P    G   +L+H+   L+      G+ A +L    LF G A 
Sbjct: 314 ASDPH-----ARFTLGIPPAKQGDYAYLLHIIRSLK----STGQGACILPHGVLFRGNA- 363

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E+EIR+ LL    I+ I+ LP +LF+ T I   + ++   K   RR  + +I+A+  +
Sbjct: 364 --EAEIRKNLLRKGYIKGIIGLPANLFYGTGIPACIVVIDK-KEANRRQAIFMIDASSGY 420

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSF 488
                    +  +      +I+D +  + E  K+SR++           + + R +    
Sbjct: 421 MK----DGPKNRLRARDIHKIVDTFNQQLEVPKYSRLVTIEEIEKNDFNLNLPRYIDSQT 476

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
             D   +          + +   + +W     P +Q+         FV   ++  E KT 
Sbjct: 477 PEDIQNIDGHLKGGIPVEDTTSLEPYWKVC--PGLQKALFKKNRTGFVDLRVEPAEIKTT 534

Query: 549 KVKASK--SFIVAFINAF-GRKDPRADPVTDVN-----GEWIPDTNLTEYENVPYLESIQ 600
             +  +   FI      F   +   A  +  ++      + I        E+      I 
Sbjct: 535 IYQHPEFTQFITQMNQHFDTWRQKAAKTLKALDAGHHPKQLIAKLADGLLEHYQASPLID 594

Query: 601 DYFVREVSPHVPDAY 615
            Y    V  H+ D +
Sbjct: 595 PY---AVYQHLMDYW 606


>gi|254932530|ref|ZP_05265889.1| type I restriction-modification system [Listeria monocytogenes
           HPB2262]
 gi|293584085|gb|EFF96117.1| type I restriction-modification system [Listeria monocytogenes
           HPB2262]
 gi|332310721|gb|EGJ23816.1| Type I restriction-modification system, M subunit [Listeria
           monocytogenes str. Scott A]
          Length = 858

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 141/739 (19%), Positives = 256/739 (34%), Gaps = 116/739 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----------SAV 55
           ++  +   +W  A +L G    + +   +L     + L      T            + +
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGEGQLSEAEL 62

Query: 56  REKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
            EKY      + +   +    V GY       Y             ++  I S       
Sbjct: 63  VEKYAKARAVHGENLDKMIQSVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 108 ------SDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                 SD+ + +F     D + T       E++  +  + + F  + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNM-VALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIA---------AKTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +      +   L  +GQE    T+ +    +L+  +  +       ++
Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEK-----MSV 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + G TLS+D             F   + NPP+        +    + +    G     LP
Sbjct: 283 KNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDPRFEIAG----VLP 338

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I+ 
Sbjct: 339 PDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYIDT 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF  T I   + IL   +       V +I+A+  +  +     K+  + +   
Sbjct: 392 IIGLPGNLFTNTGIPVCVLILKKNRAISE--PVLVIDASRNFIKV----GKQNELQEKDI 445

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADITWR 505
            +I+D YV R E   +S +            +  P  +  I  +      A L   I   
Sbjct: 446 ARIVDTYVERAEKAGYSHLASREEIVENDYNMNIPRYVESIDKEIPHDVDAHLYGGIPQA 505

Query: 506 KLSPLH------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
            +  L       ++     LKP+             +   + +++  T K    +    A
Sbjct: 506 NIDELKTLQTTVKNVLDSALKPIRDGYVQLEKTIDELTNEVLTDKNITTKSDIIREKSEA 565

Query: 560 FINAFGRKDPRADPVTDVNGEWIPDTNLTEY-ENVPYLESIQDYFVREVSPHV------- 611
           FI  + +K    + + DV    + +  L    E +   + I  Y   +V   V       
Sbjct: 566 FIELYWKKLHEINNIVDV--NPLMEEMLVNIKELLSSFDGIDVYDGYQVIAEVWKNSLTH 623

Query: 612 ------------------PDAYIDKIFIDEKDKEIGRVGYEIN---FNRFFYQYQPSRKL 650
                             P+         +++++ G VG  +      + FY  +  + +
Sbjct: 624 DAELIAGGGFYTIGRTREPNMVTKGSGNKKREEQDGWVGAIVPNELIAKRFYS-EELQII 682

Query: 651 QDIDAELKGVEAQIATLLE 669
           +D  A L  VEA+++ L+E
Sbjct: 683 EDKKARLTAVEAELSELVE 701


>gi|326569343|gb|EGE19403.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis BC8]
          Length = 545

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/499 (19%), Positives = 177/499 (35%), Gaps = 90/499 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------------EPT 51
              L   +W+ A+ L  +    ++  ++L F  L+ +  +                 E  
Sbjct: 12  LNKLDQDLWRAADTLRKNLDAANYKHIVLGFIFLKYISDSFNDFRKKHALNLTNPDSETY 71

Query: 52  RSAVREKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------- 98
                     +     D   E     A   FY   +     +   +  N           
Sbjct: 72  LDPALFDKAEYQQILNDEIEERDYYTAENIFYVPQQARWENIKDNSKLNAGDELPWGGKF 131

Query: 99  --------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--- 147
                   +    I   +   K + +               +L  +   FS  +      
Sbjct: 132 KNVSILLDDAFEAIEQENPKLKGVLQRI-----AGFGVPDEMLRGLIDLFSRTDFTRPMY 186

Query: 148 -----DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
                      ++ ++YE+ + +F     +    + TP+ +V L   +L           
Sbjct: 187 NGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------E 236

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           P     +YDP  G+GGF       +    +H      +  +GQE  P T  + V  M IR
Sbjct: 237 PYSG-RVYDPAMGSGGFFVQTDRFIQ---AHQGNRNAISVYGQESNPTTRKLAVMNMAIR 292

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGEL 321
            +  D         +   TL   L   K+  + ++NPPF  K W  +  A +        
Sbjct: 293 GIPFD------FGDKPEDTLLNPLHIDKKMDFVMANPPFNMKEWWSESLAGD-------- 338

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P   + ++ +L H+   L    +  G+ A++L++  +      SGE EIR+ +
Sbjct: 339 PRWAYGTPPQGNANLAWLQHMIYHL----SPKGKMALLLANGSM--SSQTSGEGEIRKNI 392

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +  DL+EA++ALP  LF  T I   +WI++  K   R+G+V  INAT +      + +  
Sbjct: 393 ITADLVEAMIALPNQLFTNTQIPACIWIINKAKA--RKGEVLFINATQIGYM---KDRVL 447

Query: 442 RIINDDQRRQILDIYVSRE 460
           R    D   +I D Y + +
Sbjct: 448 RDFTVDDIAKISDTYHNWQ 466


>gi|253576957|ref|ZP_04854281.1| type I restriction-modification system [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843688|gb|EES71712.1| type I restriction-modification system [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 885

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 125/629 (19%), Positives = 239/629 (37%), Gaps = 88/629 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + + L G    + +   IL    ++ +             K +A+G   
Sbjct: 13  KKSELYSSLWASCDALRGGMDASQYKDYILTLLFVKYVSDKF---------KGVAYGDIE 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
           +         G SF    +  L+ +G+ N    ++  IA  ++  N + + ++  F+   
Sbjct: 64  V-------PEGGSF----DDMLALIGNKNIGEEMDKIIAKLAEANNLRGVIDNAHFNDE- 111

Query: 125 ARLEKAGLLYKICKNFSGI--ELHPD-----TVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +L K   +        GI  +L PD        D ++ + YE+L+R F +E  +    F
Sbjct: 112 DKLGKGKEMVDKLSELLGIFRDLMPDFSRHSADGDDIIGDAYEYLMRNFATESGKSKGQF 171

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   ++                TLYDP CG+G  L  A             P
Sbjct: 172 YTPSEVSRILAKVVGIEHAKAGDT------TLYDPACGSGSLLIRAAEAA---------P 216

Query: 238 PILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +  +GQE E  T  +    +++     ++ +   S           D    ++F + +
Sbjct: 217 VDVAIYGQEKEGTTAGLARMNLVLHNRATAEIKGGYSTFSDPQFKNPNDDGALRQFDFVV 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGL-PKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPF  K           H   E GRF G G  P   +G   +L+H+   L+      G
Sbjct: 277 ANPPFSDKNWT--------HGLKEYGRFDGYGDRPPRKNGDFAWLLHVIKSLKR----NG 324

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA++L    LF G A   E+ IR+ L++  LI+ I+ LP +LF+ T I   + ++    
Sbjct: 325 KAAVILPHGVLFRGNA---EATIRQSLIDKGLIKGIIGLPANLFYGTGIPACVIVIDKEN 381

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDY--- 470
            +ER G + +I+A+  +    N+ +    + +    +I  ++  R E   +SR + Y   
Sbjct: 382 ADERDG-IFMIDASRDFIKDGNKNR----LREQDVYKITTVFNQRIELPNYSRFVPYDEI 436

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLS--PLHQSFWLDILKPMMQQIY 527
           +      + + R +      D   +   L   I    +    L+   + ++   + + + 
Sbjct: 437 KNKNAYNLNIPRYIDSGAAEDLQSIDGHLNGGIPSVDVESLSLYWDAFPNLKSALFKPLR 496

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFI--------VAFINAFGRKDPRADPVTDVNG 579
              ++ +  K++I+          A  + +                  D    P   +  
Sbjct: 497 DGFYSLAVNKDAIRDTIYSDSDFSAYANKVENAFESWKKKVDGKLRTVDGTTKPKLLIA- 555

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVS 608
             I +  L EYE V  ++    Y   EV 
Sbjct: 556 -EIAEQILVEYEPVTLVDKYDVY---EVL 580


>gi|295135271|ref|YP_003585947.1| type I restriction-modification system methyltransferase subunit
           like protein [Zunongwangia profunda SM-A87]
 gi|294983286|gb|ADF53751.1| type I restriction-modification system methyltransferase subunit
           like protein [Zunongwangia profunda SM-A87]
          Length = 521

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 182/477 (38%), Gaps = 55/477 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T    S+   +W  A  L G  + +++  V+L    L+      E  R  +  +    
Sbjct: 4   KKTTKEKSIEESLWDAANKLRGSIEPSEYKHVVLGLIFLKFASDKFEVRREELIAEGKEK 63

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN---AKAIFEDFD 119
                D  +   V   +  +   Y +      +    +++ +     N    K    D  
Sbjct: 64  YLEMKDFYNMKNVFFLAETSRWNYLIKNAKQDDIALKIDTALNQIEKNNPSLKGALPDNY 123

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS       K   L                    ++  +YE+ + +F     +G  +F T
Sbjct: 124 FSRLGLDKSKLSALLDTINKIDT----QKDKSQDIVGRVYEYFLSKFALAEGKGKGEFYT 179

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P+ +V+L   ++                 +YDP CG+GG    ++  +    SHH     
Sbjct: 180 PKSIVNLIAEMIEPYKG-----------IIYDPACGSGGMFVQSIKFIE---SHHGSKRE 225

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE    T+ +    + IR + +      +   +   T S D     +  Y ++NP
Sbjct: 226 ISIYGQEYTNTTYKLAKMNLAIRGISA------NLGDKAADTFSNDQHKDLKADYIMANP 279

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF +K  +    +  + +       G  +P  S+ +  +++++ +KL    +  G A  +
Sbjct: 280 PFNQKDWRGPQELIDDPRWQ-----GYEVPPKSNANYGWILNMVSKL----SDDGVAGFI 330

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L++  L     G  E +IRR L+EN+L+EAI+ LP ++F+ TNI+  +WIL+  KT    
Sbjct: 331 LANGAL---SGGGEEYKIRRKLVENNLVEAIIILPQNMFYTTNISVTVWILNRNKTAHTR 387

Query: 416 ---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                     +R  +V  ++   L  +     KK    +  Q + I   Y   +   
Sbjct: 388 SIGDEERHYRDRHEEVLFMD---LRQNGEPFEKKFIQFSGTQIKDIARTYHDWQQED 441


>gi|154499002|ref|ZP_02037380.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC
           29799]
 gi|150271842|gb|EDM99068.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC
           29799]
          Length = 524

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 196/475 (41%), Gaps = 64/475 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D 
Sbjct: 13  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDN 69

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
            +F       F+       S +     ++++          I   +   K    D  +S 
Sbjct: 70  VAFY-TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALPDNYYSR 128

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +  +       + ++  +YE+ + +F     +G  +F TP+ 
Sbjct: 129 LHIDTAKLASLLDEIDKINTGD-----KENDIIGRVYEYFLSKFALAEGKGKGEFYTPKC 183

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   ++   D             LYDP CG+GG    +M  V    +HH     +  
Sbjct: 184 IVNLIAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVE---AHHGNKKKVSI 229

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +C   + IR + +      +      +T + D     +  Y ++NPPF 
Sbjct: 230 YGQEYTNTTYKLCKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADYIMANPPFN 283

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 284 QKEWRGDNELIDDPRWD-----GYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLAN 334

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K        
Sbjct: 335 GALSDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEEN 391

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                   R  ++  ++   + +      KK   + ++ R ++  +Y + +   +
Sbjct: 392 GEVKRFRNREREILFMDLRQMGSPY---EKKYIELTEEDRAKVTGVYHAWQQEGY 443


>gi|261366732|ref|ZP_05979615.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
 gi|282571559|gb|EFB77094.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
          Length = 524

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 196/475 (41%), Gaps = 64/475 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D 
Sbjct: 13  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDN 69

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
            +F       F+       S +     ++++          I   +   K    D  +S 
Sbjct: 70  VAFY-TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALPDNYYSR 128

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +  +       + ++  +YE+ + +F     +G  +F TP+ 
Sbjct: 129 LHIDTAKLASLLDEIDKINTGD-----KENDIIGRVYEYFLSKFALAEGKGKGEFYTPKC 183

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   ++   D             LYDP CG+GG    +M  V    +HH     +  
Sbjct: 184 IVNLIAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVE---AHHGNKKKVSI 229

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +C   + IR + +      +      +T + D     +  Y ++NPPF 
Sbjct: 230 YGQEYTNTTYKLCKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADYIMANPPFN 283

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 284 QKEWRGDNELIDDPRWD-----GYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLAN 334

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K        
Sbjct: 335 GALSDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEET 391

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                   R  ++  ++   + +      KK   + ++ R ++  +Y + +   +
Sbjct: 392 GEVKRFRNREREILFMDLRQMGSPY---EKKYIELTEEDRAKVTGVYHAWQQEGY 443


>gi|326561037|gb|EGE11402.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis 7169]
 gi|326564412|gb|EGE14640.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis 12P80B1]
          Length = 545

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 97/494 (19%), Positives = 181/494 (36%), Gaps = 80/494 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA------ 61
              L   +WK A+ L  +    ++  ++L F  L+ +       +  ++           
Sbjct: 12  LNKLDQDLWKAADTLRKNLDAANYKHIVLGFIFLKYISDTFTDFQGKLKANIANPESDIY 71

Query: 62  -----FGGSNID-------LESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------- 98
                F  S  +        E     A   F+  ++     +   +  N           
Sbjct: 72  LDPSLFEPSEFEQILSAELEERDYYTAENIFWVPTQARWENIKDNSKLNAGDELPWGGKF 131

Query: 99  --------NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                   +    I   +   K + +          + +         +F+    + + V
Sbjct: 132 KNVSILLDDAFEAIEQENPKLKGVLQRIAGFGVPDEMLRGLTDLFSRTDFTRPMYNGEPV 191

Query: 151 ---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L           P    
Sbjct: 192 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML----------EPYSG- 240

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       +    +H      +  +GQE  P T  + V  M IR +  D
Sbjct: 241 RVYDPAMGSGGFFVQTDRFIQ---AHQGNRNAISVYGQESNPTTRKLAVMNMAIRGIPFD 297

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGP 326
                    +   TL   L   K+  + ++NPPF  K W  +  A +         R+  
Sbjct: 298 ------FGDKPEDTLLNPLHIDKKMDFVMANPPFNMKEWWSESLAGD--------PRWAY 343

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      SGE EIR+ ++  DL
Sbjct: 344 GTPPQGNANFAWLQHMIYHL----SPKGKMALLLANGSM--SSQTSGEGEIRKNIITADL 397

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +EA++ALP  LF  T I   +WI++  K   R+G+V  INAT +      + +  R    
Sbjct: 398 VEAMIALPNQLFTNTQIPACIWIINKAKA--RKGEVLFINATQIGYM---KDRVLRDFTV 452

Query: 447 DQRRQILDIYVSRE 460
           D   +I D Y + +
Sbjct: 453 DDIAKISDTYHNWQ 466


>gi|154490803|ref|ZP_02030744.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC
           43184]
 gi|154088551|gb|EDN87595.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC
           43184]
          Length = 862

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 121/590 (20%), Positives = 232/590 (39%), Gaps = 62/590 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFG 63
           +   LAN IW +A  +    +  ++   IL     + L         ++    E  +   
Sbjct: 2   NKQQLANKIWASANKMRSKIEANEYKDYILGLIFYKFLSDNEVNYLKSIGWTDEDIVTLV 61

Query: 64  GSNIDLESFVKVA------GYSF-----YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            ++ D E+ + +       GY       + T     S     +    L S+    S N +
Sbjct: 62  ENHEDQEAVMMMEYCRNNIGYFIEYKNLFGTWLKPNSEFSVADLSGALNSFDRLISPNYR 121

Query: 113 AIFEDFDFSSTIARL----EKAGLLYKICKNFSGI--ELHPDTVPD-RVMSNIYEHLIRR 165
            ++E+  F +  A L    E      +  KN   +  ++  D   D  V+  +YE+LI  
Sbjct: 122 HVYENV-FKTLQAGLSKLGENTTSQTRALKNLIKLIKDIPTDGSQDYDVLGYVYEYLISN 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   + A +F TP +V  L + ++ +      K        +YDPT G+G  L     
Sbjct: 181 FAANAGKKAGEFYTPHEVAILMSEIVAEHHKNKDKIE------IYDPTSGSGSLLITIGK 234

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----T 281
            V   G H +    +  + QEL+  T+ +    +++R ++ D       +  +      T
Sbjct: 235 SV---GRHIEDKNKVKYYAQELKENTYNLTRMNLVMRGIKPDNINTRCADSLEEDWPLQT 291

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              D+         +SNPP+ ++W+ +   ++   K+        G+   S     FL+H
Sbjct: 292 DGGDIGKPLYVDAVVSNPPYSQQWDANDRELDARFKD-------YGVAPKSKADYAFLLH 344

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRA---GSGESEIRRWLLENDLIEAIVALPTDLF 398
             + L+      G   IVL    LF G A     GE +IRR L+E + I+AI+ LP ++F
Sbjct: 345 ELHHLKP----DGILTIVLPHGVLFRGDADENSEGEGKIRRNLIEKNNIDAIIGLPANIF 400

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L   K       V +I+A+  +        K   + +   ++I D    
Sbjct: 401 FGTGIPTLIMVL---KQHRDNDDVLIIDASKGFVK----EGKNNKLRECDIKRIADTVRE 453

Query: 459 REN-GKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
           R+    +SR +  D        + + R +  S  ++K  + A +   I   ++  L + +
Sbjct: 454 RKTIPGYSRTVSRDEIRQNGYNLNIPRYVDSSDPVEKFDIYATMFGGIPHSEIDELQKYW 513

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
             D    + ++++     + + +   +  ++   +    K+F   F  AF
Sbjct: 514 --DTFPSLREELFRADTDKPYSQLRAEDTQSVIEQNADVKAFQKRFARAF 561


>gi|326406200|gb|ADZ63271.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. lactis CV56]
          Length = 859

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 106/541 (19%), Positives = 194/541 (35%), Gaps = 68/541 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------------S 53
            ++  +   +W  A +L G    + +   +L     + L      T              
Sbjct: 2   TTSEEIKKRLWDGATELRGSMDASRYKDYMLGLMFYKFLSDKTLETFRNTAGLGRISESD 61

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----------NNLES 102
            V E          +L+  ++     F          +   NT            N+ E 
Sbjct: 62  LVEEYTQNREDLGEELDKMIQQVLGYFVAPEYLYQKWIKDINTGDFEVQKVTDSLNSFEK 121

Query: 103 YIA--SFSDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVM 155
            IA    S + K +F     D + T       E++  +  +   F+ +++        V+
Sbjct: 122 TIAVTGESADFKGLFSSSTLDLTDTALGSNLNERSKNIKALINLFADLDM-VALQKSDVL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F  E  + A +F TPR V  +   ++              I+++YDPT G
Sbjct: 181 GDAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIV---------AKTSNIQSIYDPTVG 231

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L     H++      ++   L  +GQE    T+ +    +L+  +  +     + +
Sbjct: 232 SGSLLLTVGKHLSK-----EVQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKMTVRNAD 286

Query: 276 IQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                          G +F   + NPP+  K          + +    G     LP  S 
Sbjct: 287 TLSHDWPEDPSRPNVGVQFDAVVMNPPYSLKDWNKAGLKISDPRFEIAGT----LPPDSK 342

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G   FL+H    L       G  AIVL    LF G +   E +IR+ LL+ + I+ I+ L
Sbjct: 343 GDFAFLLHGLFHL----GTNGTMAIVLPHGVLFRGGS---EGDIRQRLLDKNQIDTIIGL 395

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+ +F  T I   + IL   +       V +I+A+  +  +     K+ ++ +    +I+
Sbjct: 396 PSGMFTNTGIPVIVMILKKNRPVGE--PVLVIDASRSFIKV----GKQNVLQEKDIAKIV 449

Query: 454 DIYVS-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSP 509
           D Y S RE   +S +  ++        +  P  +    D+      A L   I    +  
Sbjct: 450 DTYSSRREIEGYSYLATHKEIIANEWNMNIPRYVEADNDEIAQDVDAHLYGGIPKSNIDE 509

Query: 510 L 510
           L
Sbjct: 510 L 510


>gi|149196779|ref|ZP_01873832.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Lentisphaera araneosa
           HTCC2155]
 gi|149139889|gb|EDM28289.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Lentisphaera araneosa
           HTCC2155]
          Length = 862

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 110/512 (21%), Positives = 199/512 (38%), Gaps = 56/512 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L   L               G N
Sbjct: 2   NKQELAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSVQLTNFALEQGMTEEDIEGLN 61

Query: 67  IDLES----FVKVAGYSFYNTSEYSLSTLGST-----NTRNNLESYIASFSDNAKAIFED 117
            + E+    F +  GY       +S      T     N R+ L ++      N K +F+ 
Sbjct: 62  EEDEATVDYFKQELGYFISYDDLFSTWLKPETEFTVANVRDALSAFGRLIHPNHKKLFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I +      D V+  IYE+LI +F + 
Sbjct: 122 I-FNTLETGLSKLGESAQKQTKAINDLLHLIKNIPMDGQQGYD-VLGFIYEYLIEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + +                  +YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSLLMSEITAHHLKGNETIE------IYDPTSGSGSLLINIGTSVA- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
              + +    +  + QEL+  T+ +    +++R +  +     + +  +      D    
Sbjct: 233 --KYIENKDSIKYYAQELKGNTYNLTRMNLIMRGILPNNIEVRNGDTLEEDWPYFDDNDP 290

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +   R    +SNPP+ +KW    D+V KE  +    RF  GL   +     FL+H  
Sbjct: 291 HGSYRHLRVDAVVSNPPYSQKW----DSVNKE-TDPRYARF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G  +IVL    LF       E EIR+ L+EN+ IE I+ LP ++FF T I
Sbjct: 344 YHVK----PDGIMSIVLPHGVLFRV---GEEGEIRKQLIENNHIETIIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +L  ++   +   V +++A+  +        K   +     ++++D  ++R++  
Sbjct: 397 PTIILVLRQKR---QGDDVLIVDASKHFIK----EGKSNKLQASDIKRVVDTVINRDDRD 449

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           KFSR++           +  P  +    D   
Sbjct: 450 KFSRLVKKSEIRENEYNLNIPRYVDSSEDAEN 481


>gi|303241302|ref|ZP_07327807.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302591141|gb|EFL60884.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 802

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/716 (17%), Positives = 266/716 (37%), Gaps = 120/716 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +                    + 
Sbjct: 4   KKSELYSSLWSSCDELRGGMDASQYKDYVLVMLFVKYISDKY----------------AG 47

Query: 67  IDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +         G +F    +    + +G    +  +         +    F D +   +  
Sbjct: 48  MPYAPVTIPEGSTFKDMVALKGTANIGDDINKKIIGPIAEKNQLSDMPDFNDVNKLGSGK 107

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +               ++   +    D ++ + YE+L+R F +E  +    F +P +V 
Sbjct: 108 EMVDRLTNLIAIFEHKELDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYSPAEVS 167

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            + + ++      +   +     T+YDPTCG+G  L    +              +  +G
Sbjct: 168 RVISKII-----GINTSNVNAQTTVYDPTCGSGSLLLKVSDEAG---------IKISLYG 213

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNP 299
           QE +  T  +    M +         +    I+QG+TL+  +F       K F Y ++NP
Sbjct: 214 QEKDSATTGLARMNMYLHD-------NPLHEIKQGNTLANPMFKDENGKLKTFDYVVANP 266

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF  K   +    EK+    E  RF   G+P   +G   +L+H+   L+   +  G+ A 
Sbjct: 267 PFSDKRWGNGVNTEKD----EYERFKDYGVPPSKNGDFAYLLHIIRSLK---SSKGKGAC 319

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L    LF G A   E+EIR+ ++    I+ I+ LP +LF+ T I   + +L       R
Sbjct: 320 ILPHGVLFRGNA---EAEIRKNIIRKGYIKGIIGLPANLFYGTGIPACIIVLDKENAANR 376

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT--FGY 475
           +G + +I+A+  +    N+ + R +       +I+D++ ++ E  K+S+M+ +       
Sbjct: 377 KG-IFMIDASKGFMKDGNKNRLRSM----DIHKIVDVFNNQYEIDKYSKMVTFSEIENNE 431

Query: 476 RRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
             + + R +      D   + A L   I    +  L   +   +   +   ++     + 
Sbjct: 432 YNLNIPRYIDSQEGEDVQDIEAHLLGGIPMYDIEALKDYW--KVCPNLKGALFSKSSRDR 489

Query: 535 FV-----KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
           ++     K+ IK    +  + KA         +    KD   + +  +    +P   + +
Sbjct: 490 YLDLKVAKDYIKKTIFEHTEFKAYSD--KMEAHFKEWKDKYIEILKGMKKGLVPKKVIAD 547

Query: 590 YENVPYLESIQDYFV-------REVSPHVPDAY-------------------IDKIFIDE 623
                  ESI  ++         +V  H+ D +                     +I ++ 
Sbjct: 548 -----LSESILAHYKETSLISNYDVYQHLMDFWDEIMQDDCYIISTDGWKAETYRILVEN 602

Query: 624 KDKEIGRVGY-------EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           K K++   G+       ++  NR+FY         +   +++G+EA+   +  ++A
Sbjct: 603 KQKKMVDKGWTCDLVPKDLVINRYFY---------EEKQKIEGLEAECEGVASQIA 649


>gi|292492040|ref|YP_003527479.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291580635|gb|ADE15092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 720

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 128/606 (21%), Positives = 234/606 (38%), Gaps = 78/606 (12%)

Query: 6   GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                L + +W  A++L    D K +++   +L    L+  +       +A+ ++Y    
Sbjct: 4   EQLKQLEDDLWSAADNLRANSDLKASEYSTPVLGLIFLKFADINYRRHEAAILKEYQKLK 63

Query: 64  GSNIDLE-SFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIF 115
           G   +   + + VA   FY       S L                   I  +    +   
Sbjct: 64  GGRREKSLNEIAVARCGFYLPDHARYSHLLNLPESQDIAKAIEKAMEAIEEYKPELQGSL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               +       E   L + + + F  I   PD     V   IYE+ + +F     +G  
Sbjct: 124 PKDGYYRLTRTGETEQLPFDLLRQFDNI---PDDASGDVFGQIYEYFLGKFALAEGQGGG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-- 233
           +F TPR VV L   ++                T++DP CG+GG    +   +        
Sbjct: 181 EFFTPRSVVRLMVEIIEPH-----------GGTVFDPACGSGGMFVQSAQFIERHREEFE 229

Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291
                  +   GQE   ET  +    + +  L           I QG +   D F    +
Sbjct: 230 AQGEDTSVFVSGQEKSSETVKLARMNLAVNGLRG--------QILQGISYYDDHFGSFGK 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFLMHL 342
           F Y L+NPPF    E     VEK+ +    G         +   G   + + + L++   
Sbjct: 282 FDYVLANPPFNVD-EVSLSGVEKDPRFNTYGIPRKKTKAKKSEQGKETVPNANYLWINLF 340

Query: 343 ANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           A  L  P   + GGRAA+V+++S      A   E++IRR L+EN+LI  ++ LP+++F+ 
Sbjct: 341 ATSLREPDDKHPGGRAALVMANSA---SDARHSEADIRRTLIENNLIYGMLTLPSNMFYT 397

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL------- 453
             +   LW     KT+ER   +  I+A +++T I    +  R  +++Q + I        
Sbjct: 398 VTLPATLWFFDKGKTDER---ILFIDARNIFTPI---DRAHREFSEEQIQNIAIISRLHK 451

Query: 454 ---DIYVSRENGKF----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-TWR 505
              D +++  +  F    +R+++ R    R+++ +    ++ + D+ G   + + + TW+
Sbjct: 452 GRRDEFIALIDRYFEQGMARLVENR----RQVEPVAEQLLAVLDDEAGKKAVASLVDTWK 507

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS--NEAKTLKVKASKSFIVAFINA 563
            L+PL +++             P G   S  K  I    NEA+     +   F  A  ++
Sbjct: 508 GLAPLQKAWARHRAVHPHPGPLPAGEGASEPKAEIIDQVNEAQQTLRASFDPFFTALHDS 567

Query: 564 FGRKDP 569
             + D 
Sbjct: 568 LKQIDK 573


>gi|317014951|gb|ADU82387.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori Gambia94/24]
          Length = 817

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/621 (19%), Positives = 228/621 (36%), Gaps = 74/621 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KAKN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNA 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMTDTLSNLVKIFADLSLGTHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAGKKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +        K+    + F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPFFIKNG-MLQTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           F  K   D   ++ + K   N    RF  G P   +G   FL+H+   L+      G+ A
Sbjct: 269 FSLKNWTDGLTIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLK----DTGKGA 324

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   + +L       
Sbjct: 325 VILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACVIVLDKENAHA 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR 476
           R+G V +I+A+  +    ++ +    + D   ++++D + + +E   +S+M+        
Sbjct: 382 RKG-VFVIDASKDFKKDGDKNR----LRDQDVQKMIDTFNAYKEIPYYSKMVSLEAISLN 436

Query: 477 RIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +  P  ++   +       L          K      + +  + K +   ++     
Sbjct: 437 DYNLNIPRYIASKQELEKDLFALINSHKASYLPKNEIKAYAPYFQVFKELKNTLFKKSDK 496

Query: 533 ESFVKESIKSNEAKTLKVK-----------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           E +     +    K L  +            S    +     F   +P  +P T +  E 
Sbjct: 497 EGYYALKTECENIKDLITQSLEYQTFHASVLSAFDRLELFTTFNDLEPGFNPKTLI--ES 554

Query: 582 IPDTNLTEYENVPYLESIQDY 602
           +    L E+E V  L+    Y
Sbjct: 555 VCSKVLKEFEKVGILDKYGVY 575


>gi|325104014|ref|YP_004273668.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter
           saltans DSM 12145]
 gi|324972862|gb|ADY51846.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter
           saltans DSM 12145]
          Length = 519

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/544 (18%), Positives = 205/544 (37%), Gaps = 71/544 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   + ++    +W +A  L G  + +++  V+L    L+         R  + ++  
Sbjct: 1   MAKKVQTKST-EEILWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFIRRREELIKEG- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKA 113
               + +++  F + A   FY   E   + +     + ++          I   + + + 
Sbjct: 59  --QNAFLEIPEFYQ-AENVFYLPVESRWTYIIENAKQEDITLKVDSALKTIERTNKSLEG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
              D  FS       K   L     N   +          ++  +YE+ + +F     +G
Sbjct: 116 ALPDNYFSRLGLDQSKFSALLDTINNIDTLR----DEAQDIVGRVYEYFLSKFAIAEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP+ +V+L   ++                 +YDP+CG+GG    ++  +     H
Sbjct: 172 KGEFYTPKSIVNLIAEMIEPYKG-----------KIYDPSCGSGGMFVQSLKFIE---KH 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQEL   T  +    + IR + +      +   +   T + D     +  
Sbjct: 218 QGNKKDISIYGQELTNTTFKLAKMNLAIRGISA------NLGNKAADTFADDQHKELKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF  K  + ++ +  + +       G  +P  S+ +  +++++ +KL    +  
Sbjct: 272 YIMANPPFNLKDWRAENELTDDTRWT-----GYEVPPKSNANYAWILNMISKL----SQN 322

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L     G  E +IR+ ++ENDL+EAIV LP  +F+ T+I+  LWIL+  
Sbjct: 323 GVAGFILANGAL---SGGGEEYKIRKQIIENDLVEAIVILPRAMFYSTDISVTLWILNRN 379

Query: 414 KTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           KTE              R+G+V  ++   L        KK    +++    I   Y + +
Sbjct: 380 KTERTVEVNDGIKNYRNRKGEVLFMD---LRQKGEPFEKKFIQFSENDIEYITGTYHNWQ 436

Query: 461 NGKFSRMLDYRTFGYRRIKVL--RPLRMSFILDK-----TGLARLEADITWRKLSPLHQS 513
              F               V   R    S +  K          L+ D   + L    + 
Sbjct: 437 QKDFESKYTNEAEYCYSANVEEIRKKDYSLVPSKYIEFVNRDENLDYDTQMQSLQTELKD 496

Query: 514 FWLD 517
            +  
Sbjct: 497 LFQQ 500


>gi|153000715|ref|YP_001366396.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS185]
 gi|151365333|gb|ABS08333.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS185]
          Length = 847

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/587 (19%), Positives = 214/587 (36%), Gaps = 96/587 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + ++L G    + +   +L    ++ +                      
Sbjct: 4   KKNELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSDKY----------------KG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
                 V   G SF    +  ++        + L   I S    ++ K + +  DF+   
Sbjct: 48  DPYGMIVVPKGASF----DDMIAAKNDKEIGDKLNKIIGSLAEENDLKGVIDVADFNDED 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F G++L  +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGKGKEMVDRLTKLVGIFQGLDLTGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++        + +     T+YDPTCG+G  L  A N         + P  L
Sbjct: 164 SEVSQILAKVV------GIQNNTPQDATVYDPTCGSGSLLLKASN---------EAPRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNP 299
              GQE++  T A+    M++     +    + K         KD     K F + ++NP
Sbjct: 209 SIFGQEMDNATSALARMNMILHN---NATAKIWKGNTLADPQWKDGANKLKTFDFAVANP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K             N   GRF  G P   +G   FL+H+   L+      G+ A++
Sbjct: 266 PFSNKNWTSGL----NPLNDPYGRFTWGTPPEKNGDYTFLLHIITSLK----STGKGAVI 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---RKTE 416
           L    LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++     +K  
Sbjct: 318 LPHGVLFRGNA---EANIRQNLIKQGYIKGIIGLPANLFYGTGIPACIIVIDKEHAQKAA 374

Query: 417 ERRGK---------------------------VQLINATDLWTSIRNEGKKRRIINDDQR 449
              G+                           + +I+A+  +    N+ +    +     
Sbjct: 375 VHFGEALQGERPLIEGHGNDVKNNQTHITGRSIFMIDASKGFIKDGNKNR----LRSQDI 430

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWR 505
            +I+D++    E  +FSR++           + + R +  S   D   L A L+  I  R
Sbjct: 431 HKIVDVFNKGLELERFSRLVTIDEIAKNDYNLNIPRYIDSSEPEDLHDLSAHLQGGIPNR 490

Query: 506 KLSPL--HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
            +  L  +   +  I   +  +       + +    I +++ K   +
Sbjct: 491 DIDALAHYWQVFPSIRATLFGRNPELPARDGYSHCMIDASKVKASIL 537


>gi|291288564|ref|YP_003505380.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885724|gb|ADD69424.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 521

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/487 (19%), Positives = 185/487 (37%), Gaps = 63/487 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +       +W +A  L G  + +++  V+L    L+      E  +  +  +     
Sbjct: 3   KQKNGKRDEEILWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFEERKKELIAEG---K 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFE 116
               D+  F       FY   E   S +   + ++N+        S +   +   K    
Sbjct: 60  EKYTDMVEFY-TMRNVFYLPEESRWSHIKKNSKQSNIALIVDTALSTVEKNNAALKGALP 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  FS       K   L     N   +          ++  +YE+ + +F     +G  +
Sbjct: 119 DNYFSRLGLETSKLAALIDTISNIDTL----KDKERDIVGKVYEYFLSKFALAEGKGKGE 174

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +V+L   ++                 +YDP CG+GG    +M  +    +H   
Sbjct: 175 FYTPKSIVNLIAEMIEPYKG-----------KIYDPCCGSGGMFVQSMKFI---DAHKGN 220

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQEL   T+ +    + IR + ++             T   D F   +  Y +
Sbjct: 221 RKDVSIYGQELTAATYKLAKMNLAIRGISANLGEIGK------DTFLNDQFPDLKADYIM 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF +K  +    +  + +       G   P + + +  +++H+ +KL    +  G A
Sbjct: 275 ANPPFNQKDWRAGTELTSDPR-----WNGYETPPVGNANYGWILHMVSKL----SENGVA 325

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             +L++  L     G  E +IR+ ++EN+L+EAI+ LP ++F+ TNI+  LWI++  K E
Sbjct: 326 GFILANGAL---SGGGDEYKIRKKIIENNLVEAIIILPQNMFYTTNISVTLWIINKNKKE 382

Query: 417 E-------------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                         R  +V  ++            KK    ++D  ++    + + +  +
Sbjct: 383 RVVNIPDSTREYRSREKEVLFMDLRQEGEPF---EKKYIQFHEDHIKRFARTFHTWQTKQ 439

Query: 464 FSRMLDY 470
           F    D 
Sbjct: 440 FHDEFDN 446


>gi|284048513|ref|YP_003398852.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
 gi|283952734|gb|ADB47537.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
          Length = 857

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/623 (18%), Positives = 225/623 (36%), Gaps = 75/623 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----------RSAV 55
           +   LA+ IW++A  +    +  ++   IL F   + L    E             R  V
Sbjct: 2   NKQKLASKIWESANKMRSKIEANEYKDYILGFIFYKYLSDQEERYLLQRDYRPEDIRDYV 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
            E+         D   +  +A    ++T           N R  L S+    S   K +F
Sbjct: 62  NEEDAETVQMVQDNLGYF-IAYKDMFSTWLSMGRDFTVDNVRTALSSFTRLISPTHKLVF 120

Query: 116 EDFDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   F++    L K           +  + +    I +        V+  IYE+LI +F 
Sbjct: 121 DKI-FNTLETGLSKLGENTKSQTKAVRDLLQLIKDIPMDGKQ-DYDVLGFIYEYLISQFA 178

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   + A +F TP +V  L + ++        +       ++YDPT G+G  L +  +  
Sbjct: 179 ANAGKKAGEFYTPHEVSQLMSEIIAHYLQGREEI------SIYDPTSGSGSLLINIGH-- 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-- 285
                + K    +  + QEL+  T+ +    +++R +        + +  +      D  
Sbjct: 231 -AAAKYMKDANKIRYYAQELKQNTYNLTRMNLVMRGILPANIIARNGDTLEEDWPYFDDS 289

Query: 286 ----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                +        +SNPP+ ++W+           +    RF  GL   S     FL+H
Sbjct: 290 DPTGTYNPLYVDAVVSNPPYSQQWDPSGK-----DNDPRYSRF--GLAPKSKADYAFLLH 342

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G   IVL    LF    G  E  IR+ L+E + I+AI+ LP ++FF T
Sbjct: 343 DLYHLK----PDGIMNIVLPHGVLFR---GGEEGTIRKNLVEYNHIDAIIGLPANIFFGT 395

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I T + +L  ++       V +++A+  +        K   +     R+I+D  +SR +
Sbjct: 396 GIPTIIMVLRQKRENT---DVLIVDASKGFVK----EGKNNKLRASDIRRIVDTVISRRD 448

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             +++R +           +  P           +   E   +W     ++ + +  I +
Sbjct: 449 VPQYARKVSREEIRANDYNLNIPRY---------VDSSEPTESW----DIYATMFGGIPE 495

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD--PRADPVTDVN 578
             +  + PY      +KE +        ++K +        N    +D   +        
Sbjct: 496 SELAGLQPYWDTFPTLKEELFVTCQGYAQLK-NPDIRKTVENNLAVRDFQEKFTQNFKDF 554

Query: 579 GEWIPDTNLTEYENVPYLESIQD 601
            +++  T +   E +   ++ +D
Sbjct: 555 PQYLHHTLIDGMEKISIAQAEED 577


>gi|220934949|ref|YP_002513848.1| type I restriction-modification system specificity subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996259|gb|ACL72861.1| type I restriction-modification system specificity subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 799

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/519 (18%), Positives = 187/519 (36%), Gaps = 63/519 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W   ++L G    + +   +L    ++ +                    + 
Sbjct: 4   KKSELYSSLWSGCDELRGGMDASQYKDYVLVLLFIKYVSDKY----------------AG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-SDNAKAIFEDFDFSSTIA 125
                     G SF +    +             +  IA   + N  +   DF+  + + 
Sbjct: 48  QPYAPITIPPGASFKD---MAALKGKPDIGDQINKKIIAPLANANQLSEMPDFNDPNKLG 104

Query: 126 -RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              E    L  +   F    ++   +    D ++ + YE+L+R F +E  +    F TP 
Sbjct: 105 SGKEMVDRLTNLIAIFEDKRLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTPA 164

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  +   +L      +   S     T+YDPTCG+G  L    +              + 
Sbjct: 165 EVSRVMAQIL-----GIRNASTSADTTVYDPTCGSGSLLLKVADEAG---------TDVT 210

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE +  T  +    M++     +P   + +          D  + K F Y ++NPPF
Sbjct: 211 LYGQEKDAATSGLARMNMILHN---NPTALIMQGNTLADPKFLDGQSLKTFDYVVANPPF 267

Query: 302 GKK-WEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
             K W    D     H+     RF   G+P    G   +L+H+   L+      GR A +
Sbjct: 268 SDKRWSTGLDPASDPHE-----RFKHYGIPPDKQGDYAYLLHILRSLK----STGRGACI 318

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E++IRR L+    I+ I+ LP +LF+ T I   + ++   +   R 
Sbjct: 319 LPHGVLFRGNA---EADIRRNLVRKGYIKGIIGLPPNLFYGTGIPACIVVVDKAEAHGRD 375

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR-- 476
           G + +I+A+  +         +  +      +I+D++  + E   ++R +          
Sbjct: 376 G-IFMIDASGGFMK----DGPKNRLRSQDIHKIVDVFTKQAELPGYARRVPLAEIEKNDY 430

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            + + R +      D+  +                QS+W
Sbjct: 431 NLNLPRYIDSQQAEDRQDIEGHLRGGIPEADVDALQSYW 469


>gi|284931718|gb|ADC31656.1| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. F]
          Length = 877

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/581 (20%), Positives = 225/581 (38%), Gaps = 84/581 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-------RSAVREKY 59
           +   L   IW  A ++ G+ +  D+   IL F   + L    +         +   +++Y
Sbjct: 2   TKQELVREIWAIANEMRGNIEANDYKDYILGFLFYKYLSDKQDEYFANKNVVKDEDKKQY 61

Query: 60  L------AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-----------STNTRNNLES 102
           L         G    +    K  GY     + +S                ST   +   S
Sbjct: 62  LVALAEAEKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFERS 121

Query: 103 YIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +  + ++ K IF+D             E++  ++ IC   + I +        ++  +Y
Sbjct: 122 ILEKYEESFKDIFKDLQVGIQKLGNTAYERSEAIWNICNLINKIPITSKQ-DYDILGFVY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP +V  L + +  +    L         ++YDPT G+G  
Sbjct: 181 EYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL------KNVSIYDPTSGSGSL 234

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +     + KI      + QE+   T+ +    +L+  + S     ++   + G
Sbjct: 235 LITLGRELKKIDKNVKIQ----YYAQEVIDTTYNITRMNLLMNDVHS-----VNMFAKCG 285

Query: 280 STLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            TL +D         +  KR    +SNPP+   W  +    +         RF  GL   
Sbjct: 286 DTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKEND--------PRFRYGLAPK 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + FL+H    L       G   IVL    LF G +   E +IR+ L+ +D I+AI+
Sbjct: 338 SKSELAFLLHSLYHL----EDHGILTIVLPHGVLFRGGS---ELQIRQNLISHDHIDAII 390

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++FF T I T + +L   KT++ +  V  I+A+  +T   N+ K    +      +
Sbjct: 391 GLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFTKEGNKNK----LQSSDIMR 446

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I D + +RE+   F+R++ +         +  P  +  + +                  L
Sbjct: 447 IYDAFSAREDIPGFARVVSHEEIKANEYNLNIPKYIDLVDNGDN-------------HNL 493

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
           + S +  I    + ++  +      +K+++ ++  K  ++K
Sbjct: 494 YSSIFSGIPHNDIDKLSDFWSTFPTLKKALLNDNGKNYQLK 534


>gi|332655470|ref|ZP_08421207.1| ribosomal protein L11 [Ruminococcaceae bacterium D16]
 gi|332515605|gb|EGJ45218.1| ribosomal protein L11 [Ruminococcaceae bacterium D16]
          Length = 524

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 196/475 (41%), Gaps = 64/475 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D 
Sbjct: 13  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDN 69

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
            +F       F+       S +     ++++          I   +   K    D  +S 
Sbjct: 70  VAFY-TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALPDNYYSR 128

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +  +       + ++  +YE+ + +F     +G  +F TP+ 
Sbjct: 129 LHIDTAKLASLLDEIDKINTGD-----KENDIIGRVYEYFLSKFALAEGKGKGEFYTPKC 183

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   ++   D             LYDP CG+GG    +M  V    +HH     +  
Sbjct: 184 IVNLIAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVE---AHHGNKKKVSI 229

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +C   + IR + +      +      +T + D     +  Y ++NPPF 
Sbjct: 230 YGQEYTNTTYKLCKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADYIMANPPFN 283

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 284 QKEWRGDNELIDDPRWD-----GYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLAN 334

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K        
Sbjct: 335 GALSDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEEN 391

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                   R  ++  ++   + +      KK   + ++ R ++  +Y + +   +
Sbjct: 392 GEVKRFRNREREILFMDLRQMGSPY---EKKYIELTEEDRAKVRSVYHAWQQEGY 443


>gi|229606285|ref|YP_002876933.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229607599|ref|YP_002878247.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229607706|ref|YP_002878354.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229608128|ref|YP_002878776.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229368940|gb|ACQ59363.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370254|gb|ACQ60677.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370361|gb|ACQ60784.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370783|gb|ACQ61206.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
          Length = 530

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 204/553 (36%), Gaps = 67/553 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  S    +W  A  L G  + +++  ++L    L+ +    E  R  + +  L      
Sbjct: 15  NEKSFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLEKHIDM 74

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFD 119
           +            FY   E   S +     + ++        S I   +   +    D  
Sbjct: 75  VP----AYTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDNY 130

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS     + K   L  +  N   +        + V+  +YE+ + +F     +G  +F T
Sbjct: 131 FSRLGLDVSKLAALIDVINNIDTL----ANPHEDVVGRVYEYFLSKFAIAEGKGKGEFYT 186

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P+ +V+L   L+                 +YDP CG+GG    +M  + +   + K    
Sbjct: 187 PKSIVNLIAELIEPYKG-----------KIYDPCCGSGGMFVQSMKFIENHKGNKK---D 232

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE    T+ +    + IR + +      +       T + D     +  + ++NP
Sbjct: 233 ISVYGQEYTGATYKLAKMNLAIRGISA------NLGAAAKDTFANDQHETLKADFIMANP 286

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF +K  +  D +  +H+       G   P  S+ +  +++H+ +KL    +  G A  +
Sbjct: 287 PFNQKDWRASDELVDDHRWD-----GYETPPTSNANYGWILHMVSKL----SENGVAGFI 337

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           LS+  L        E EIR+ L+EN+L+EAI+ LP ++F+ T+I+  LWIL+  K     
Sbjct: 338 LSNGAL---SGDGTEKEIRKKLIENNLVEAIILLPRNMFYTTDISVTLWILNKNKKAHTV 394

Query: 416 ---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE----NG 462
                     +R  ++  ++          +  +    ++   +++ D   + +      
Sbjct: 395 PHEDVTRNYRDREEEILFMDLRQRGEPFEKKFIQ---FSEQDIKELADTLHTWQQVGAED 451

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+  + +Y     +     +   +          R E      K+S L + F   + +  
Sbjct: 452 KYKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENINFDEKMSNLKEQFSQLLAQEE 511

Query: 523 MQQIYPYGWAESF 535
             +       +  
Sbjct: 512 KSKNELLNVFKEL 524


>gi|261403056|ref|YP_003247280.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus vulcanius M7]
 gi|261370049|gb|ACX72798.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus vulcanius M7]
          Length = 523

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 107/514 (20%), Positives = 201/514 (39%), Gaps = 64/514 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--------- 60
              N +WK A+ L    +   +  V+L    LR L C     R  + ++           
Sbjct: 12  EFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEDELSNPNSELYTE 71

Query: 61  --AFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESYIA----SFSDNA 111
                   ++ + F    G  +       +Y +  + S N    +++ I      + D  
Sbjct: 72  DPELRKMILEDKDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 131

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K +       S +   + A L       FS I    +     V   IYE+ + +F     
Sbjct: 132 KNVIPKIYAQSPLDNHDYAYL----INKFSEISFGKEYKVKDVFGRIYEYFLGKFTEVEG 187

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR +  L   +L                T++DP CG+GGF   A+  +   G
Sbjct: 188 KLGGKFYTPRSLTKLIVDVLDI-----------KGGTIFDPACGSGGFFVSALEKLEGEG 236

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +GQ+ +P  + +    ++IR  E D R         G +   D F    
Sbjct: 237 IDIN---ELSIYGQDSDPMAYRLTKMNLIIRGAEGDIRI--------GDSYHDDKFMNMV 285

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F Y ++NPPF      D + ++ +     +G     +P  ++ + ++++H     +    
Sbjct: 286 FDYVVANPPFNDSEW-DSNRIKPDDPRLRIGNKKVPVPPNNNANYMWILHFIYHTK---- 340

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A  V+++  L    AG+ E EIR+ ++ENDL+  IVA P  LF+  ++   LW + 
Sbjct: 341 SNGKAGFVMANGAL---SAGNVEGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIR 397

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------- 463
             K +  +GKV  INA +L+  I    +++ I+ ++   +I+D +   E+G+        
Sbjct: 398 KEKPDYMKGKVLFINAKNLYKQI---SRRQNILTEEHINKIVDKFKMLESGENEEKINEL 454

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            F+++            +     +   ++  G+ 
Sbjct: 455 GFAKVATIDEIAKNGYVLTPGRYVGVKIEDDGIP 488


>gi|218133858|ref|ZP_03462662.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991233|gb|EEC57239.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC
           43243]
          Length = 523

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/550 (17%), Positives = 208/550 (37%), Gaps = 64/550 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +   G    D+
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH---GEKYADM 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
           + F       FY   E     +     ++++          I   +   K    D  +S 
Sbjct: 69  KPFYTQE-NVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSR 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +      D   + ++  +YE+ + +F     +G  +F TP+ 
Sbjct: 128 LHIDTAKLASLLDEINRINT-----DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKC 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   +L   D             LYDP CG+GG    ++  V     + K    +  
Sbjct: 183 IVNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKK---KVSI 228

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + +      +      +T + D     +  + ++NPPF 
Sbjct: 229 YGQEYTNTTFKLAKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADFIMANPPFN 282

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  + ++ +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 283 QKQWRAENELVDDPR-----WNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLAN 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K        
Sbjct: 334 GALSDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQN 390

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
                  +R  ++  ++   + +      KK   + ++ R ++  +Y + +   +    +
Sbjct: 391 GKLKRYRDREDEILFMDLRQMGSPY---EKKYIELTEEDRAKVTSVYHNWQQEGYEETYE 447

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                             F L  +                  +S   ++ + ++Q+    
Sbjct: 448 NVPEFCYSASFEEVKEKGFTLVPSRYIEFVNRDENIDFDTKMKSLQGELKELLVQEEKSK 507

Query: 530 GWAESFVKES 539
               +  KE 
Sbjct: 508 SDLLAVFKEL 517


>gi|289435130|ref|YP_003465002.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171374|emb|CBH27916.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 871

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 122/701 (17%), Positives = 249/701 (35%), Gaps = 89/701 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + + N +W  A+ L G  +   +   IL    ++ +                      
Sbjct: 4   KKSEIYNQLWAAADKLRGGVEPARYKNYILTMLFVKYVSDKY----------------KT 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D       A  SF +  ++   T        ++ +     +        DFD +     
Sbjct: 48  SDDWEIEIPADSSFDDIVKHKFQTDIGEKINTSISAIAEKNNLKGIIDIADFDSNELGEG 107

Query: 127 LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                 +  +   F   EL         D ++ + YE+L+R+F  +  +    F TP +V
Sbjct: 108 KTHVDKVSDLVAIFQKPELDFTKNRAGGDDILGDAYEYLMRKFAQDSGKSKGQFYTPGEV 167

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             +   ++         ++     T+YDP CG+G  L  A +              +  +
Sbjct: 168 SRVMARVI------GLDKATSSSMTVYDPACGSGSLLIRAADVA---------LVEITIY 212

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE +P T  +    +++    +    ++ +         K+    KRF Y + NPPF  
Sbjct: 213 GQEYDPSTAGLARMNLVLHNKGA---GEIQRGNTLADPKWKENNQLKRFDYIVVNPPFSD 269

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   D    ++    G     G G+P   +G   + +H+   L+      G+AAI+L   
Sbjct: 270 KSWTDGTLPDQ---YGRYSEVGYGVPPEKNGDYAWFLHVLKSLKAK----GKAAIILPHG 322

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF    G+ E EIR+ ++++  I+ I+ LP ++FF T I   + I+      ER G + 
Sbjct: 323 VLFR---GNTEGEIRKKIIDHGYIKGIIGLPANIFFGTGIPACIIIVDKEDAVEREG-IF 378

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDYRTF---GYRRI 478
           +I+A+  +    N+ +    + +    +I+  +    + + K++R +            +
Sbjct: 379 MIDASQDFVKEGNKNR----LREQDIEKIVRTFNTMDQSDTKYARFVLNEEIKEDNEYNL 434

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP--------YG 530
            + R +  S   D   +              L  ++W +          P          
Sbjct: 435 SIPRYIDNSNNEDLQDIEAHLKGGIPESDVDLLSNYWEEYPSLHQDLFEPLRLGYLQAKV 494

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIV------AFINAFGRKDPRADPVTDVNGEW--- 581
             E  V+    +NE      +   SF+         +     +D   + +  ++ +    
Sbjct: 495 EKEQVVEVINANNEFIEHSKRIKDSFLTWKHEVLPILMNLTVEDKPKNIIEFISHKILRL 554

Query: 582 -IPDTNLTEYENVPYLES-IQDYFVREVSPHVPDAY--------IDKIFIDEKDKEIGRV 631
              D+ + EY+    +    ++    ++   + D Y        I ++     ++E   +
Sbjct: 555 FEEDSLIKEYDVYQIVMEYWEEIMEDDIYAVISDGYEAGNQVVNITRVKKANGEEEEEVI 614

Query: 632 GYE---INFNRFFYQYQPSR--KLQDIDAELKGVEAQIATL 667
           G+E   I   +    Y   R  ++QD+   L+  EA+I  L
Sbjct: 615 GWEGLIIPKEQIIITYFEDRLSEIQDLKQVLEKNEAEIEEL 655


>gi|307243983|ref|ZP_07526104.1| putative type I restriction-modification system, M subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492633|gb|EFM64665.1| putative type I restriction-modification system, M subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 521

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 198/490 (40%), Gaps = 64/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +      S+   +WK+A+ L G  +  ++  V+L    L+      E  R  + E + 
Sbjct: 1   MAKKIKKEISMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASYKFEECRRNIIENH- 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113
             G    D++ F       FY   E   S +     ++++          I   +   K 
Sbjct: 60  --GEKYADMKPFY-TKENVFYLPEESRWSYIIENAKQDDIALKIDTALFTIEKNNPLLKG 116

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
              D  +S       K   L       +      +   + ++  +YE+ + +F     +G
Sbjct: 117 ALPDNYYSRLHIDTSKLASLLDEINRINT-----NDKENDIIGRVYEYFLSKFALAEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP+ +V+L   +L   D             LYDP CG+GG    ++  V     +
Sbjct: 172 KGEFYTPKCIVNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSVKFVEAHSGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K    +  +GQE    T  +    + IR + +      +      +T + D     +  
Sbjct: 221 KK---KVSIYGQEYTNTTFKLAKMNLAIRGISA------NLGEMAANTFTNDQHKDLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF +K  +  + +  + +       G  +P  S+ +  +++++ +KL    +  
Sbjct: 272 FIMANPPFNQKEWRTANELIDDPR-----WNGYEVPPTSNANYGWILNIVSKL----SQN 322

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L +      E +IRR L+EN+L+EAIV LP +LF+ T+I+  LWIL+  
Sbjct: 323 GVAGFLLANGALSDDGT---ELKIRRQLIENNLVEAIVILPRNLFYTTDISVTLWILNKN 379

Query: 414 KTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           K +              R  ++  ++   + +      KK   + D+ R ++ ++Y + +
Sbjct: 380 KKDRVVEQNGQIKRYRNREKEILFMDLRQMGSPY---EKKYIELTDEDRAKVTEVYHNWQ 436

Query: 461 NGKFSRMLDY 470
              F +  + 
Sbjct: 437 QENFEKTYEN 446


>gi|291551220|emb|CBL27482.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus torques L2-14]
          Length = 523

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/550 (17%), Positives = 208/550 (37%), Gaps = 64/550 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +   G    D+
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH---GEKYADM 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
           + F       FY   E     +     ++++          I   +   K    D  +S 
Sbjct: 69  KPFYTQE-NVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSR 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +      D   + ++  +YE+ + +F     +G  +F TP+ 
Sbjct: 128 LHIDTAKLASLLDEINRINT-----DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKC 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   +L   D             LYDP CG+GG    ++  V     + K    +  
Sbjct: 183 IVNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKK---KVSI 228

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + +      +      +T + D     +  + ++NPPF 
Sbjct: 229 YGQEYTNTTFKLAKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADFIMANPPFN 282

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  + ++ +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 283 QKQWRAENELVDDPR-----WNGYEVPPTSNANYGWILNIVSKL----SRNGVAGFLLAN 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K        
Sbjct: 334 GALSDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQN 390

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
                  +R  ++  ++   + +      KK   + ++ R ++  +Y + +   +    +
Sbjct: 391 GKLKRYRDREDEILFMDLRQMGSPY---EKKYIELTEEDRAKVTSVYHNWQQEGYEETYE 447

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                             F L  +                  +S   ++ + ++Q+    
Sbjct: 448 NVPEFCYSASFEEVKEKGFTLVPSRYIEFVNRDENIDFDTKMKSLQGELKELLVQEEKSK 507

Query: 530 GWAESFVKES 539
               +  KE 
Sbjct: 508 SDLLAVFKEL 517


>gi|153811904|ref|ZP_01964572.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174]
 gi|149832038|gb|EDM87123.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174]
          Length = 523

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 192/481 (39%), Gaps = 64/481 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +   G    D+
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH---GEKYADM 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
           + F       FY   E     +     ++++          I   +   K    D  +S 
Sbjct: 69  KPFYTQE-NVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSR 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +      D   + ++  +YE+ + +F     +G  +F TP+ 
Sbjct: 128 LHIDTAKLASLLDEINRINT-----DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKC 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   +L   D             LYDP CG+GG    ++  V     + K    +  
Sbjct: 183 IVNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKK---KVSI 228

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + +      +      +T + D     +  + ++NPPF 
Sbjct: 229 YGQEYTNTTFKLAKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADFIMANPPFN 282

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  + ++ +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 283 QKQWRAENELVDDPR-----WNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLAN 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K        
Sbjct: 334 GALSDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQN 390

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
                   R  ++  ++   + +      KK   + ++ R ++  +Y + +   +    +
Sbjct: 391 GKLKRYRNREDEILFMDLRQMGSPY---EKKYIELTEEDRAKVTSVYHNWQQEGYEETYE 447

Query: 470 Y 470
            
Sbjct: 448 N 448


>gi|110004783|emb|CAK99117.1| probable adenine-specific dna-methyltransferase hsdm subunit
           transmembrane protein [Spiroplasma citri]
          Length = 517

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 112/553 (20%), Positives = 224/553 (40%), Gaps = 72/553 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLA 61
           +       L + +W  +  L G  + +++ + IL     R L   ++       + +++ 
Sbjct: 6   KQNVQQQQLFSKLWDISNTLRGIMEPSEYKEYILGLIFYRYLSDNVQSIIEKDLKIEWID 65

Query: 62  FGGSNID-------LESFVKVAGYSFYNTSEYSLSTLGSTNT---------RNNLESYIA 105
           +  S  D       LE         +Y   EY    + +            R   E  I 
Sbjct: 66  YQTSLTDEKYRNDFLEVLYDNDSAGYYIEPEYLWQEIINKINIGKFDIFLLRKAFEKLIE 125

Query: 106 SF-----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           S          + +F+  D  S+       EK+ ++ K+    + I    +     ++ +
Sbjct: 126 STIGYSSEKQFENLFDSVDLDSSKLGKTEAEKSKIIAKVMLKINEINFEINESEIDILGD 185

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP+ V  L   L+         +    I+T+YDPTCG+G
Sbjct: 186 AYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYDPTCGSG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +           I   +GQEL+  ++ +    M++  L+ +       NI 
Sbjct: 238 SLLLRVYKELK----------IGHLYGQELKTNSYNIARMNMMLHGLKYNK-----FNIY 282

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G TL  D F G+ F   ++NPP+   W  ++  +  E +    G+  P     +     
Sbjct: 283 NGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDE-RFSAYGKLAP----KTKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ ++  KL    +  G  A V+    LF G A   E  IR++++E + I+ I++LP ++
Sbjct: 338 FIQNMIYKL----SDNGVMAAVIPHGILFRGNA---ELIIRKYMIEKNWIDTIISLPVNM 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + ++   K +     +  I+A+  +    N+      + D    +I++I+ 
Sbjct: 391 FYGTSIPTCIIVMKKCKID---NSILFIDASKEFQKQGNK----NTLTDKNIIKIINIFN 443

Query: 458 SREN-GKFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGLARLEADITW--RKLSPLHQ 512
            R+   KFS ++D          + + R +  +   +   +  L+ ++    +++  L +
Sbjct: 444 KRKTIDKFSNLVDIEIIKENDYNLNIARYVDNTEEKEIINIKALQDNLINNEKEIQKLDE 503

Query: 513 SFWLDILKPMMQQ 525
            F L +   ++  
Sbjct: 504 EFNLMLKDLVINN 516


>gi|313887163|ref|ZP_07820859.1| putative type I restriction-modification system, M subunit
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923392|gb|EFR34205.1| putative type I restriction-modification system, M subunit
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 525

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 188/483 (38%), Gaps = 64/483 (13%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +  G    S+   +W++A  L G  + +++  V+L    L+         R     + 
Sbjct: 5   MAKKQGKKEKSIEESLWESANKLRGSVEPSEYKHVVLSLIFLKYANDCFIERR----AQL 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
           +A G      E+    A   FY T     S L     +       +   + +   ++  K
Sbjct: 61  IAKGEERYVDEAAFYTATNVFYLTEHSRWSYLMEHAKQPDIAIKIDAALAEVERVNETLK 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                  +SS      K   L         +          ++  +YE+ I +F     +
Sbjct: 121 GALPSNYYSSLGLDQTKLSALLDEINKIDTL----KDREHDLIGRVYEYFISKFAIAEGK 176

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  ++ TP+ +V+L   ++   +             +YDP CG+GG    +M  +    +
Sbjct: 177 GKGEYYTPKSIVNLIAEMIQPYEG-----------KIYDPCCGSGGMFVQSMKFIE---A 222

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           HH     +  +GQE    T+ +    + IR + S      +       T   D     + 
Sbjct: 223 HHGNKKNISVYGQEYTNTTYKLAKMNLAIRGIAS------NLGAVAADTFHNDQHKDLKA 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF +K  + K+ +  + +       G  +P  S+ +  +++++ +KL +    
Sbjct: 277 DFIMANPPFNQKSWRAKNELVDDPRWA-----GYEVPPTSNANYGWILNIVSKLSV---- 327

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  +L++  L        E  IR+ L+EN L+EAIV LP ++F+ T+I+  LWIL+ 
Sbjct: 328 NGVAGFLLANGAL---SGEGTEQAIRKQLIENKLVEAIVILPRNMFYSTDISVTLWILNR 384

Query: 413 RKT-------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            K               +R  KV  ++   L  S     KK    + +Q  +I + + + 
Sbjct: 385 NKKARTINQNGALVKYRDRERKVLFMD---LRQSGEPFEKKYIQFSPEQIAEIANNFHTW 441

Query: 460 ENG 462
           +  
Sbjct: 442 QQE 444


>gi|268610089|ref|ZP_06143816.1| type I restriction-modification system methyltransferase subunit
           like protein [Ruminococcus flavefaciens FD-1]
          Length = 523

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 194/475 (40%), Gaps = 64/475 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           S+   +WK+A+ L G  +  ++  V+L    L+      E  R  + EKY   G   +D 
Sbjct: 12  SMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKY---GDKFVDN 68

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
            +F       FY  +E   S +     ++++          I   +   K    D  +S 
Sbjct: 69  IAFY-TKDNVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALPDNYYSR 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L       +      D   + ++  IYE+ + +F     +G  +F TP+ 
Sbjct: 128 LHIDTSKLASLLDEIDKINT-----DDSENDIIGRIYEYFLGKFALAEGKGKGEFYTPKC 182

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+L   L+   D             LYDP CG+GG    ++  V     + K    +  
Sbjct: 183 IVNLIAELIEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKK---KVSI 228

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + +      +      +T + D     +  Y ++NPPF 
Sbjct: 229 YGQEYTNTTFKLAKMNLAIRGISA------NLGEMAANTFTNDQHKDLKADYIMANPPFN 282

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K  + ++ +  + +       G  +P  S+ +  +++++ +KL    +  G A  +L++
Sbjct: 283 QKEWRAENELVDDPR-----WNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLAN 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L +      E +IR+ L++N+L+EAI+ LP  LF+ T+I+  LWIL+  K        
Sbjct: 334 GALSDDGT---ELKIRKQLIDNNLVEAIIILPRSLFYTTDISVTLWILNKNKKARDVEKN 390

Query: 416 ------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                  +R  ++  ++   + +      KK   + ++ R ++   Y + +   +
Sbjct: 391 GETIHYRDREREILFMDLRQMGSPF---EKKYVELTEEDRAKVTATYHAWQQKGY 442


>gi|153951493|ref|YP_001398800.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938939|gb|ABS43680.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 489

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 190/504 (37%), Gaps = 60/504 (11%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREKYLAFGGSNIDL-ESFVKVAGYS 79
           + G     DF   +L F     +   L+    ++ ++ Y        +     V  A   
Sbjct: 1   MRGSVDGWDFKSYVLGFLFYYFICENLKSYVLNSFKQDYENLSDEMAENGRDTVINAKGF 60

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASF------------SDNAKAIFEDFDFSSTI--- 124
           F   S    +   + N  N  E     F              + + +F+D D  S     
Sbjct: 61  FIKPSHLFTNIFKNANLENLNEKLSVVFKEIESSANGSESEKSFRGLFDDLDLYSNKLGA 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
              E+   + KI +  S ++LH +        + YE L+  + S   +   +F TP++V 
Sbjct: 121 DNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMYASNAGKSGGEFFTPQEVS 180

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   + L  +    K        +YDP CG+G  L      +       K  P     G
Sbjct: 181 KLLVEITLHNNAKPNK--------VYDPACGSGSLLLQYKKSL-------KSDPKKGYFG 225

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPF 301
           QE+   T+ +    M +  +          +I  G T    S++    + F   +SNPP+
Sbjct: 226 QEINITTYNLARMNMFLHDVNY-----TRFDIAHGDTLISPSENHKELEPFDAIVSNPPY 280

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             KWE   +A+     N E       L   S   + F+MH  + L    +  G AAIV  
Sbjct: 281 STKWEGKDNALLI---NDERFNKAGVLAPTSKADLAFVMHSLSWL----SEKGSAAIVCF 333

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              ++   A   E EIR++++E + ++ +++L  +LFF T+IA  + +L   KT++    
Sbjct: 334 PGVMYRSGA---EKEIRKYIIEENFVDCVISLAPNLFFGTSIAVCILVLRKNKTDK---N 387

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK- 479
              INA + +  + N+     +++ +    IL +Y  R+     ++++            
Sbjct: 388 TLFINANEEFIKVTNK----NMLSKENLENILKLYKDRKEVPHLTKLVSIEEIAKNDYNL 443

Query: 480 -VLRPLRMSFILDKTGLARLEADI 502
            V   + +    +   +  L  +I
Sbjct: 444 SVSSYVEVKDTREIIDIKVLNKEI 467


>gi|295136495|ref|YP_003587171.1| type I restriction-modification system DNA methylase [Zunongwangia
           profunda SM-A87]
 gi|294984510|gb|ADF54975.1| type I restriction-modification system DNA methylase [Zunongwangia
           profunda SM-A87]
          Length = 540

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/490 (20%), Positives = 187/490 (38%), Gaps = 70/490 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
             T +  +    +WK A +L G      +   ILP   L+ +    E  +  +++K    
Sbjct: 4   NTTKADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISERYEMRKDEIKKKLNDQ 63

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------------LE 101
                 L     N  LE   +    + Y   E +       N   +            L+
Sbjct: 64  TSDYYTLDEEEQNYVLEDPDEYLSKNVYIIPEKATFQYLQDNAEQDNIKVLVDEAFDILD 123

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYE 160
             +A+   + K I       S +     A  +  +    S  +L     PD  ++  +YE
Sbjct: 124 ETLAANRPDLKGILPRIFVKSQLT----AKQVAGLINLLSNPKLSEKENPDSDILGRVYE 179

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + I +F      GA  F TP  +V L   L+   +             ++D  CG+GG  
Sbjct: 180 YYIGKFAIAEGSGAGQFFTPGSIVRLLVELIEPYEG-----------KIFDAACGSGGMF 228

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             ++  +   G   K    +  +GQE    T  +C   + +R L  D        ++ G 
Sbjct: 229 VQSLKFLQAHGGDKKN---ISIYGQERYDGTLRLCKMNLALRDLSFD--------VRLGD 277

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLF 338
           +L +D F   +  + + NPPF       +D  E + +      FGP        + + ++
Sbjct: 278 SLLQDKFPDLKADFIIVNPPFNVSQWHPEDLPENDPRL-----FGPKEEFTTDGNANYMW 332

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    + L    +  G AA+V+++  +       GE  +R+ ++E ++++ IV LP  LF
Sbjct: 333 MQTFWHHL----SDKGTAAVVMANGAM--TSNNKGEKNVRQLMVEKNMVDCIVRLPDKLF 386

Query: 399 FRTNIATYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
             T I   ++ILS  +        +R G++  I+ + + T    E +K R+ N+    +I
Sbjct: 387 LTTGIPACIFILSKNRDGKDGIHRKRTGEILFIDTSKMGTM---ESRKLRVFNEQDINKI 443

Query: 453 LDIYVSRENG 462
            D Y +  N 
Sbjct: 444 TDTYHAWRND 453


>gi|21228396|ref|NP_634318.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906869|gb|AAM31990.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 808

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/495 (19%), Positives = 190/495 (38%), Gaps = 61/495 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +                    ++
Sbjct: 4   KKSELYSSLWSSCDELRGGMDASQYKDYVLVLLFIKYVSDKY----------------AD 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS--FSDNAKAIFEDFDFSSTI 124
           I         G SF    +  ++  G  +  + +   I +   + N  +   DF+ S+ +
Sbjct: 48  IPFAPINVPEGASF----KDMVALKGKPDIGDQINKKIIAPLVNANKLSDMPDFNDSAKL 103

Query: 125 A-RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               E+   L  +   F    ++   +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 GSGKEQVERLTNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   +L      +         T YDPTCG+G  L    +              +
Sbjct: 164 AEVSRIIAQIL-----GIRYADTTSSTTAYDPTCGSGSLLLKVADEARTK---------I 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T  +    M++     +P   + +         KD  T K F Y ++NPP
Sbjct: 210 TLYGQEKDATTSGLARMNMILHN---NPEALIVQGNTLTDPRFKDRETLKTFDYVVANPP 266

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F  K          +       RF P G+P    G   +L+H+   L+      G+ A +
Sbjct: 267 FSDKRWSTGL----DPLKDIYERFKPFGIPPAKQGDYAYLLHIVRSLK----STGKGACI 318

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G +   E+EIR  L+    I+ I+ LP +LF+ T I   + ++   + + R+
Sbjct: 319 LPHGVLFRGNS---EAEIRHALVRKGYIKGIIGLPANLFYGTGIPACIIVIDKEEAQNRK 375

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRI 478
             + +I+A+  +         +  +      +I+D++  + E  K+SR++ +        
Sbjct: 376 S-IFMIDASAGFMK----DGPKNRLRAQDIHRIVDVFTRQAEIPKYSRIVSFEEIEKNEF 430

Query: 479 KVLRPLRMSFILDKT 493
            +  P  +    D+ 
Sbjct: 431 NLNLPRYIDSQQDED 445


>gi|190890487|ref|YP_001977029.1| type I restriction-modification system protein, methyltransferase
           subunit [Rhizobium etli CIAT 652]
 gi|190695766|gb|ACE89851.1| probable type I restriction-modification system protein,
           methyltransferase subunit [Rhizobium etli CIAT 652]
          Length = 830

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/525 (19%), Positives = 196/525 (37%), Gaps = 76/525 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + +   +W + + L G    + +   IL    ++ +                      
Sbjct: 22  KKSDIYRSLWDSCDQLRGGMDASLYKDYILTLLFVKYVSDR------------------A 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSS-- 122
              ++ ++V     ++         GS +    ++  IA  ++  + K + +   F+   
Sbjct: 64  AQADALIEVPKGCSFDDLR---KLRGSKDIGEGIDKAIAGIAEANDLKNVIDRAFFNDAE 120

Query: 123 TIARLEKAGLLYKICKNF---SGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              R EK         N      +    +    D ++ + YE+L+R F +E  +    F 
Sbjct: 121 KFGRGEKMVKTLTALINIFSREELNFSRNRADGDDILGDAYEYLMRNFATESGKSKGQFY 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +  A+      A    +    +T+YDPTCG+G  L  A +             
Sbjct: 181 TPAEVSRVVAAV------AGINRANSPRQTVYDPTCGSGSLLLKAADAA---------SV 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFH 293
            L  +GQE +  T  +    M++   E            QG  ++   F       + F 
Sbjct: 226 ELTIYGQEFDITTRGLAKMNMIMHGREDAEIA-------QGDVIADPQFRASETAIQTFD 278

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF  K             N   GRF  G+P   +G   FL+H+   ++      
Sbjct: 279 FVVANPPFSTKAWSSGLTA-----NNRFGRFDIGMPPEKNGDFAFLLHILASMKA----T 329

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G  A++L    LF    G+ E+E+R  +L+   ++AI+ LP +LF+ T I   + +L   
Sbjct: 330 GSGAVILPHGVLFR---GNKEAELREKILKRGYVKAIIGLPANLFYGTGIPATIIVLDKS 386

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
              +RR  V +I+A+  +    N+ +    + +    +I+D+Y  + E   +S ++ Y  
Sbjct: 387 GACDRR-PVFMIDASRGFIKDGNKNR----LRERDIHKIIDVYARQVEIKGYSSLVSYDD 441

Query: 473 FGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                  + + R +  +   D   +          +   L   FW
Sbjct: 442 ITRSDFNLNIARYIDGADPEDLQDIEAHLKGGVPDRDIDLLDDFW 486


>gi|145631521|ref|ZP_01787289.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982866|gb|EDJ90383.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 483

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/494 (28%), Positives = 208/494 (42%), Gaps = 131/494 (26%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISDGSMLFLMH 341
            LSNPP+GK W KD+  + K+       RF                 P+ SDG +LFLM 
Sbjct: 1   MLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDATPRSSDGQLLFLME 59

Query: 342 LANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL+EAIV LP +LF+
Sbjct: 60  MVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLLEAIVQLPNNLFY 119

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY-- 456
            T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K      +   +I   Y  
Sbjct: 120 NTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFAPEHIAEITQNYLD 179

Query: 457 ---VSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD----- 501
               +RE           S++ D + FGY ++ + RP R S       +A L  D     
Sbjct: 180 FTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIAPLRFDKALFE 239

Query: 502 ------------------------------------------------ITWRKLSPLHQS 513
                                                            TW K + L Q+
Sbjct: 240 PMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQT 299

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
               +     QQ   +   +  V+  +K+      K+  S +   A  NA    D  A  
Sbjct: 300 ASTLLEHFGEQQFDDFNQFKQAVECRLKAE-----KIPLSATEKKAVFNAVSWYDENAAK 354

Query: 574 VTDVN---------------------------------GE---WIPDTNLTEYENVPYLE 597
           V                                     GE   +   ++L + E++P  +
Sbjct: 355 VIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYLQYETSSDLRDSESIPLKQ 414

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           +I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R L D+  ++
Sbjct: 415 NIHDYFKAEVQPHISEAWLNM--------ESVKIGYEISFNKYFYRHKPLRSLADVAQDI 466

Query: 658 KGVEAQIATLLEEM 671
             +E Q   L+ E+
Sbjct: 467 LALEKQTDGLISEI 480


>gi|199581425|gb|ACH89414.1| FclIM [Flavobacterium columnare]
          Length = 814

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/521 (19%), Positives = 207/521 (39%), Gaps = 58/521 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+ ++L G    + +   +L    ++ +    +  + +  +  +  G S 
Sbjct: 4   KKSELYSSLWKSCDELRGGMDASQYKDYVLTLLFVKYISDKYKGKKFSAIK--VPEGASF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D+ + V                 +G    +  L     +   N    F DF+  + + +
Sbjct: 62  DDMVALVGTP-------------NIGDDINKKILNPIKEA---NKLNDFPDFNDETKLGK 105

Query: 127 LEK-AGLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            +     + K+   F+  +L     +   D ++ + YE+L+R F ++  +    F TP +
Sbjct: 106 GKNLVDTVGKLILIFNSPDLDFSSNNANDDDLLGDAYEYLMRHFATDSGKSKGQFYTPSE 165

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  +   ++      +  ++     T YDPTCG+G  L                   +  
Sbjct: 166 VSKVLAKVI-----GITPQNSNAQTTAYDPTCGSGSLLLKVAEAAEKT---------IDL 211

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE E  T  +    M++    S                  D    K F Y +SNPPF 
Sbjct: 212 YGQEKEFATANLAKMNMILHGNPSAEIIADDTLSHPYFKSDNDDDNLKSFDYIVSNPPFS 271

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K   +  ++    KN    RF  G+P   +G   FL+H+   ++      G+AAIVL  
Sbjct: 272 LKSWSNGVSI----KNDPYKRFELGVPPEKNGDYAFLLHIIKSMK----STGKAAIVLPH 323

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF G A   E+EIR+ +++   I+ I+ LP +LF+ T I   + +L       R   +
Sbjct: 324 GVLFRGNA---EAEIRKEIIKKGFIKGIIGLPANLFYGTGIPACIIVLDKENAHNRS-HI 379

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG----YRR 477
            +++A+  +T   N+ +    + +    +I+D++ +  E  K+SR ++ +          
Sbjct: 380 FMMDASKGFTKDGNKNR----LQEKNIHKIVDVFNNELEVPKYSRKVEIKEISDDKNDYN 435

Query: 478 IKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
           + + R +      D   + A +   I  R +  L + + + 
Sbjct: 436 LNIPRYIDAQEEEDIQDIDAHIFGGIPERDIEALGKYWNIF 476


>gi|15603402|ref|NP_246476.1| hypothetical protein PM1537 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721926|gb|AAK03621.1| HsdM [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 568

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/585 (17%), Positives = 207/585 (35%), Gaps = 111/585 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L   +WK+A+ L  + +  ++  VIL    L+ +  A    + ++    
Sbjct: 1   MNNSEQQYLNELDAKLWKSADKLRSNIEAANYKHVILSLIFLKYVSDAFLARQHSIQQQL 60

Query: 56  -----------------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTR 97
                             E   A       L+ + +   +    T+ +  L T  +T   
Sbjct: 61  TDPEHLYYLDPSFYDSEEEYQQALANELEQLDYYTEENVFWVPKTARWDVLKTKATTPVG 120

Query: 98  NNLESYIASFSDNAKAI-------FEDFDFSSTIARLEKAGLLYKICKN---FSGIELHP 147
             L           + +        +  + S+   +   A +     ++      I L  
Sbjct: 121 AVLWQDEQGEDVKMRNVSWLVDLALDTIEKSNDKLKNILARISQYQVEDNRLIELISLFS 180

Query: 148 DT--------------VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           DT                  ++ ++YE+ + +F     +   ++ TP+ +V+L   +L  
Sbjct: 181 DTYFANPEYQGEKLNLKSKDILGHVYEYFLGKFALAEGKNGGEYYTPKSIVNLIVEMLQP 240

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVPHGQELE 248
                          ++DP  G+GGF       +            +    +  +GQE  
Sbjct: 241 YQG-----------RVFDPAMGSGGFFVSNDKFIETHAKEKHYASDEQRRRISIYGQEST 289

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEK 307
             T  + V  M+IR +      D +   +   + ++D     R  + ++NPPF K  W  
Sbjct: 290 STTWKLAVMNMVIRGI------DFNFGKKHADSFTEDQHPDLRADFVMANPPFNKDDWWH 343

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           +    +         R+  G P + + +  ++ H+   L       G  A++L++  +  
Sbjct: 344 ESLEHD--------ARWQYGTPPVGNANFAWVQHMLYHL----APTGSMALLLANGSM-- 389

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEER 418
                GE EIR+ L++ D++E +V+LP  LF  T I   +W L+          +K   R
Sbjct: 390 SSNTGGEGEIRKRLIDEDVVECMVSLPDKLFTNTRIPACIWFLTKDKKNGVSFDKKKRNR 449

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---------FS-RML 468
            G+V  I+A  L      + +  R   D   ++I+  + + + G+         +S ++ 
Sbjct: 450 SGEVLFIDARQLGYM---KDRVLRDFTDADTQKIVQTFHNWQYGESYQDEAGFCYSAKLA 506

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           D +   Y    +L P R    + +       A+   +KL+ L   
Sbjct: 507 DIQKHDY----ILTPGRYVGAVAQEEDCEPFAEK-MQKLTALLNQ 546


>gi|77165284|ref|YP_343809.1| hypothetical protein Noc_1809 [Nitrosococcus oceani ATCC 19707]
 gi|254434165|ref|ZP_05047673.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|76883598|gb|ABA58279.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090498|gb|EDZ67769.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 849

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 163/468 (34%), Gaps = 83/468 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M +       SL N +WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNDTEQQFLKSLDNKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEQLLALF 60

Query: 57  ------------EKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLST--------- 90
                       E Y         L   +++  Y      F+       +T         
Sbjct: 61  KDESNDIYYLSPEDYDGDADYQQALRDELEILDYYREANVFWVPKAARWNTVKEKAVLPV 120

Query: 91  ---LGSTNTRNNLE-SYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNF 140
              L   +  N+++   ++   DNA    E  +       +       +   L  +   F
Sbjct: 121 GTVLWQDDAGNDVKLRSVSWLMDNALEAIEKSNAKLRGILNRISQYQLENEKLLGLINTF 180

Query: 141 SGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           S                    ++ ++YE+ + +F     +    + TP+ +V L   +L 
Sbjct: 181 SDTSFTKPVYGGEKLHLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML- 239

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQEL 247
                     P     +YDP  G+GGF   +   + +          +    +  +GQE 
Sbjct: 240 ---------EPYSG-RVYDPAMGSGGFFVSSDKFIEEHAKEQHYDPAEQKKHISVYGQES 289

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            P T  +    M IR +      D +   +   T   D     R  + ++NPPF  K   
Sbjct: 290 NPTTWKLAAMNMAIRGI------DFNFGKKNADTFLDDQHPDLRADFVMANPPFNMKDWW 343

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +   +         R+  G P   + +  ++ H+ + L       G  A++L++  +  
Sbjct: 344 SESLADD-------ARWQYGTPPKGNANFAWMQHMIHHL----APTGSMALLLANGSM-- 390

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
               + E +IR+ L+E DL+E +VALP  LF  T I   +W L+  K 
Sbjct: 391 SAHTNNEGKIRQRLIEEDLVECMVALPGQLFTNTQIPACIWFLTKDKA 438



 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            +RR +   I+A +L        +  R    D   +I D + + +
Sbjct: 498 RDRRREFLFIDARNLGYM---RDRVLRDFTLDDIAKIADTFHAWQ 539


>gi|110597490|ref|ZP_01385777.1| type I restriction-modification system, M subunit [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341034|gb|EAT59505.1| type I restriction-modification system, M subunit [Chlorobium
           ferrooxidans DSM 13031]
          Length = 815

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/561 (20%), Positives = 216/561 (38%), Gaps = 78/561 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W++ ++L G    + +   +L    ++ +       R A  E  +  G S 
Sbjct: 18  KKSELYSSLWQSCDELRGGMDASQYKDYVLVLLFVKYVSDKYAGVRFA--EITVPPGASF 75

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS--FSDNAKAIFEDFDFSSTI 124
            D+ +                    G T+  + +   I     S N  +   DF+  + +
Sbjct: 76  SDMVALK------------------GKTDIGDQINKKILGPLASANKLSDMPDFNDDTKL 117

Query: 125 A-RLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +K   L  +   F    ++   +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 118 GSGKDKVDTLTNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQFYTP 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++      +         T+YDPTCG+G  L    +  A           +
Sbjct: 178 AEVSRIMAKII-----GIHNAPTTSNTTVYDPTCGSGSLLLKVGDEAAAR---------V 223

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------KRFHY 294
             +GQE +  T  +    M++         + +  I+QG+TL+  LF        K F Y
Sbjct: 224 TLYGQEKDAATSGLARMNMILHN-------NPTAEIKQGNTLANPLFFDADSGDLKTFDY 276

Query: 295 CLSNPPFGKK-WEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNG 352
            ++NPPF  K W K  D  +        GRF   G+P    G   +L+H+   L+     
Sbjct: 277 VVANPPFSDKSWSKGIDPFD-----DPFGRFRHFGVPPAKQGDYAYLLHIIRSLK----S 327

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+ A +L    LF G A   E++IR  L+    I+ ++ LP +LF+ T I   + ++  
Sbjct: 328 TGKGACILPHGVLFRGNA---EADIRSKLVIMKYIKGVIGLPANLFYGTGIPACIIVIDK 384

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYR 471
           +    R+G + +I+A+  +         +  + D    +I+D++    E  K+SRM+   
Sbjct: 385 KDAHTRKG-IFMIDASAGFMK----DGPKNRLRDMDLHRIVDVFSRELEIPKYSRMVGIE 439

Query: 472 TFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL---DILKPMMQQI 526
                   + + R +      D   +                Q +W    ++ + + ++ 
Sbjct: 440 EIEKNGFNLNLPRYIDNQEAEDIQDIEGHLRGGIPITDVDALQPYWDVCPELRRTLFKEN 499

Query: 527 YPYGWAESFVKESIKSNEAKT 547
            P     +  K +IKS     
Sbjct: 500 RPGYLDLAIPKGAIKSTIYNH 520


>gi|225850848|ref|YP_002731082.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
 gi|225645479|gb|ACO03665.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
          Length = 898

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 120/605 (19%), Positives = 222/605 (36%), Gaps = 82/605 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L N +W+ A  L G    + +   +L    ++ +                 + G  
Sbjct: 4   KKTQLYNHLWEAANALRGGMDASQYKDYVLTILFVKYVTD--------------KYKGDP 49

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA- 125
            + + F+   G SF +  E              L                DFD  + +  
Sbjct: 50  YNEDGFIVPEGGSFDDLIEAKGKKNIGERINIVLSKLAEENGLKGVIDIVDFDDDTKLGT 109

Query: 126 RLEKAGLLYKICKNFSGIELHPD---TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             EK   L K+   F   EL+     +  D ++ ++YE+ +++F +E  +    F TP +
Sbjct: 110 GKEKVDRLTKLIGIFENPELNFSRNRSDGDDILGDVYEYFMKKFATEAGKSKGQFYTPAE 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  +   ++        +++    +T YDPTCG+G  L    +         + P  +  
Sbjct: 170 VSRVMAKII------GVEKATSPDQTAYDPTCGSGSLLLKVAD---------EAPVKISL 214

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
           +GQE++     +    M++              I QG+TLS   F       K F + ++
Sbjct: 215 YGQEIDINVANIARMNMILHG-------RPDAEIAQGNTLSHPKFKNPDGSLKTFDFAVA 267

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF +K   D   V    KN +  RF  G+P   +G   FL+H    L+      G+ A
Sbjct: 268 NPPFSQKNWMDGVNV----KNDQYHRFDDGVPPAKNGDYAFLLHFIKSLK----SKGKGA 319

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L    LF G A   E+EIR+ L++   I+ I+ LP +LF+ T I   + ++  +  + 
Sbjct: 320 IILPHGVLFRGNA---EAEIRKNLIKKGYIKGIIGLPPNLFYGTGIPAVILVIDKKNAQA 376

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
           R+G + +I+A+  +    N+ +    + +    +I+D +V+  E   +SRM+        
Sbjct: 377 RKG-IFIIDASKGYRKDGNKNR----LRERDIHKIVDTFVNFKEIPGYSRMVSLEEIEKN 431

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +  P  +     +              +  ++      I K  + +I          
Sbjct: 432 DYNLNIPRYIESTEKED-------------IQDIYAHLHGGIPKRDIDKIEILNVFNDLK 478

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
               +  E     +          I+        A+ V +     +        EN+P L
Sbjct: 479 NRLFRKKEEGYYTLNVD-------IDNLTEIIENAEEVKEFKSHALAVFEKWTDENMPIL 531

Query: 597 ESIQD 601
             I  
Sbjct: 532 TGIDK 536


>gi|150389394|ref|YP_001319443.1| type I restriction-modification system, M subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949256|gb|ABR47784.1| type I restriction-modification system, M subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 858

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 110/599 (18%), Positives = 218/599 (36%), Gaps = 71/599 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----------RSAV 55
           ++  +   +W+ A +L G    + +   +L     + L      T              +
Sbjct: 3   TSEEIKRRLWEGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETFRITAGVEKVTEKEL 62

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEY------------SLSTLGSTNTRNNLESY 103
            E+Y+       +    +      +Y + EY            +       ++ NN E  
Sbjct: 63  VEEYIKAKKEYGEALEKMIQDVLGYYVSPEYLYQIWLKDINDGNFEVQKVADSLNNFERS 122

Query: 104 IASFSD--NAKAIFED--FDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I S  +  + K +F     D + T       E++  +  +   FS + +        ++ 
Sbjct: 123 IVSSGEVNDFKGLFSSSTLDLTDTALGSNLHERSNNIKALILLFSDLNM-VALQKGDILG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TP  V  +   ++              I+++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIV---------AKTTEIKSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H++           L  +GQE    T+ +    +L+  +  +     + + 
Sbjct: 233 GSLLLTVKKHLSK-----DRQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKMTIKNGDT 287

Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                        +  +F   + NPP+  +          + +    G     LP  S G
Sbjct: 288 LGNDWPEDPENPNEGVQFDAVVMNPPYSAQNWNKAGLKVSDPRFEIGGT----LPPDSKG 343

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L       G   IVL    LF G +   E EIR+ L++ + I+A++ LP
Sbjct: 344 DYAFLLHGLYHL----GTKGTMGIVLPHGVLFRGSS---EGEIRKKLIDKNQIDAVIGLP 396

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           ++LF  T I   + IL  +K       V +I+A++ +  +     K+ ++ +    QI+D
Sbjct: 397 SNLFTNTGIPVAIIIL--KKNRNISDPVLMIDASNNFIKV----GKQNVLQERDIAQIVD 450

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADITWRKLSP- 509
           +Y+S+ E   FS +   +        +  P  +  + +       A L   I    ++  
Sbjct: 451 VYISKDEIAGFSHLACLKEIIQNEYNMNIPRYVQSLEEDIAHDVDAHLFGGIPAENINEL 510

Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
             LH+     + + + +    Y   ++ +KE   +       +  SK   V       +
Sbjct: 511 KILHELVPEVLEQSIEEIRPGYVRLKNSIKEMTDTVLKHESILSLSKELKVEITEYISK 569


>gi|311747174|ref|ZP_07720959.1| type I restriction-modification system, M subunit [Algoriphagus sp.
           PR1]
 gi|126578883|gb|EAZ83047.1| type I restriction-modification system, M subunit [Algoriphagus sp.
           PR1]
          Length = 802

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 109/525 (20%), Positives = 204/525 (38%), Gaps = 69/525 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W + ++L G    + +   +L    ++ +                    + 
Sbjct: 4   KKSELYSSLWASCDELRGGMDASQYKDYVLVMLFIKYISD----------------KWAG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSD-NAKAIFEDF-DFSST 123
                     G SF    +  ++  G T+  + +    IA   + N  +   DF D +  
Sbjct: 48  QPFAPITIPEGASF----KDMIALKGKTDIGDQINKKIIAPLKEANNLSDMPDFNDVNKL 103

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               E    L  +   F   EL         D ++ + YE+L+  F +E  +    F TP
Sbjct: 104 GDGKEMVDRLSNLITIFQKKELDFSKNRAEGDDILGDAYEYLMMHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++      + ++      T+YDPTCG+G  L    +              +
Sbjct: 164 AEVSRIMAMII-----GISQDQTNANTTVYDPTCGSGSLLLRIGSAAKTK---------V 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE +  T A+    M++           S  I+QG+TL+  LF      K+F Y +
Sbjct: 210 TLYGQEKDSATSALSRMNMILHD-------YPSAEIKQGNTLANPLFLEDGKMKQFDYVV 262

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K   +  ++  +  N     F  G+P   +G   +L+H+   L+    G    
Sbjct: 263 ANPPFSDKRWSNGLSIPNDEPNNRFAGF--GVPPSKNGDFAYLLHIVRSLKRNAKG---- 316

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L    LF G A   E+EIR  L++   I+ I+ LP +LF+ T I   + ++      
Sbjct: 317 AIILPHGVLFRGNA---EAEIRTNLIKKGYIKGIIGLPANLFYGTGIPACIILIDKENAL 373

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFG- 474
            R+  V +++A+  +    N+ +    + +   R I D++ +  E   +SRM+       
Sbjct: 374 NRKA-VFMVDASKGYIKDGNKNR----LREQDIRNITDVFNAQFEVPGYSRMVSKHEIEQ 428

Query: 475 -YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
               + + R +      D   + A L   I    +  L Q + + 
Sbjct: 429 NEYNLNLPRYIDSQEKEDIQDIDAHLNGGIPNADVDDLQQYWKVY 473


>gi|296171676|ref|ZP_06852890.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894037|gb|EFG73800.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 457

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 160/457 (35%), Gaps = 91/457 (19%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A  L G      +  V+L    L                        
Sbjct: 3   ATDKELEDTLWKAANKLRGSLSAGQYKDVVLGLVFL------------------------ 38

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                              E++      +   N     I    D+A  +       + + 
Sbjct: 39  -------------------EHAGEAEWKSLVGNADSPGIGRLVDDAMEV-------AALP 72

Query: 126 RLEKAGLLYKICKNFSGIE---LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           RL +     ++ +    ++   L        +M  +YE+ +  F         +F TP  
Sbjct: 73  RLYENLDPRRVGELVCLLDAARLGERGGARDLMGELYEYFLGNFARAEGRRGGEFFTPPS 132

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV +   +L                 +YDP CG+GG        VA+   H      +  
Sbjct: 133 VVRVIVEVLEP-----------ASGRVYDPCCGSGGMFVQTERFVAE---HDGDSAKISF 178

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE   +T  +    + +  ++     D     + G TL  D   G +  Y L+NPPF 
Sbjct: 179 WGQESVEQTWRLAKMNLAVHGID-----DTGLGARWGDTLLADQHAGIQMDYVLANPPFN 233

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K            ++    R+  G+P   + +  ++ H+ +KL      GG+A +V+++
Sbjct: 234 IKEWA---------RDERDPRWRFGVPPAGNANYAWIQHILSKL----APGGKAGVVMAN 280

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             + +      E EIR  +++ DL+  +VALP  LF  T I   LW     K   R G+V
Sbjct: 281 GSMSSNALR--EGEIRARIVDADLVSCMVALPAQLFRSTPIPVCLWFFDTDKGT-RSGQV 337

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             I+A  L   +    +  R +  ++  +I D Y + 
Sbjct: 338 LFIDARGLGHLV---DRAERALTPEEIVRIGDTYHAW 371


>gi|300780280|ref|ZP_07090136.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300534390|gb|EFK55449.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 395

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 159/421 (37%), Gaps = 53/421 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYLAFG 63
               + +WK A+ L G    + +  ++L    L+ +  A +  R  +R     E      
Sbjct: 7   KDFQDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRQELRAELEEEGATEEE 66

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIF--E 116
                 +    +    F+   +     L     G T+        I    D A      +
Sbjct: 67  TLEELEDRDAYLEKNVFWVAPKARWDYLQRHSKGKTSDAGGEFKAIGKLIDEAAETLMAD 126

Query: 117 DFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSE 169
           +     T+     +       L ++   FS      +       ++  +YE+ + RF S 
Sbjct: 127 NPSLEGTLPHNYNSESVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFASA 186

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TPR VV     +L   +             +YDP CG+GG    A   +  
Sbjct: 187 EGKRGGEFYTPRPVVRTLVEILEPTEG-----------RVYDPCCGSGGMFVQAEKFLE- 234

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +H + P  +  +GQEL   T  +    + I  L +          + G T ++D+  G
Sbjct: 235 --AHDRDPSAIAIYGQELNERTWRMARMNLAIHALSAKG-----LGERWGDTFARDIHPG 287

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
               Y L+NPPF  K            +N +  R+  G+P   + +  ++ H+ +KL   
Sbjct: 288 VEMDYVLANPPFNIKDWV---------RNTDDTRWMYGVPPEKNANFGWMQHIISKL--- 335

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G A +V+++  +      SGE EIR+ +LE+D++  ++ LP  LF  T I   +W 
Sbjct: 336 -SPQGEAGVVMANGTM--TSNTSGEGEIRKNMLEDDIVSCVITLPAQLFRATGIPVCVWF 392

Query: 410 L 410
            
Sbjct: 393 F 393


>gi|293400125|ref|ZP_06644271.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306525|gb|EFE47768.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 496

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/531 (19%), Positives = 201/531 (37%), Gaps = 69/531 (12%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGSNIDLE-------------- 70
            +  +F   IL       L    E   + +  +  +++  +  D E              
Sbjct: 1   MEAYEFKNYILGMIFYYYLSDRTEKYMANLLKDDGISYEDAWADEEYKEAVVEEALRDLG 60

Query: 71  -----SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 F+            + +  L          +      ++   +F D    ST  
Sbjct: 61  FIIEPQFLFRKMVKMVENRSFDIEFLQKAINALMESTLGNDSQEDFDGLFSDMQLDSTKL 120

Query: 126 R---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                +++ ++ KI      I    +     V+ N YE+LI +F +   + A +F TP  
Sbjct: 121 GHTVKDRSAVMAKIIAALDEINFGVEDTKIDVLGNAYEYLIGQFAATAGKKAGEFYTPSG 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
              L   L       +   +        DPTCG+G  L    N+            +   
Sbjct: 181 PAELLCRLACLGLTDVKDAA--------DPTCGSGSLLLRLKNYA----------NVRNY 222

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL   T+ +    M++R +        + NI  G TL  D F   +F   ++NPP+ 
Sbjct: 223 YGQELTSTTYNLARMNMILRGIPY-----RNFNIYNGDTLEHDYFGDMKFRVQVANPPYS 277

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            KW  D   +E + +  E G+  P     S     F+ H+ + +    +  GRA ++L  
Sbjct: 278 AKWSGDLSFME-DPRFNEYGKLAP----KSKADFAFVQHMVHHM----DEDGRAVVLLPH 328

Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             LF G A   E  IR+ L++  ++++A++ LP +LFF T I   + +L  R+       
Sbjct: 329 GVLFRGAA---EEVIRKHLIQKLNVLDAVIGLPANLFFGTGIPVCVLVL-KRERNGNSDN 384

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RI 478
           +  I+A++ + + +N    + I+ +    +I++ Y  RE+  K++ +   +        +
Sbjct: 385 ILFIDASNDFEAGKN----QNILRECDIDKIVETYERREDVDKYAHVATMQEIEENGFNL 440

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
            + R +      ++  L  + A+I  RKL    +    ++     +    +
Sbjct: 441 NIPRYVDTFEPEEEIDLNEVAAEI--RKLQSEIKDIDAELKPFFDELGLDF 489


>gi|295090549|emb|CBK76656.1| type I restriction system adenine methylase (hsdM) [Clostridium cf.
           saccharolyticum K10]
          Length = 816

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 191/520 (36%), Gaps = 55/520 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + + + IW   + L G  +   +   IL    ++ +                     N 
Sbjct: 5   KSEIYSQIWAACDKLRGGVEPARYKDYILTLLFVKYVSDRF-------------KSSDNW 51

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           D+E      G SF +                 +     +          DF+        
Sbjct: 52  DIEV---PDGGSFDDIIALKYKKNIGEGINIIIGKLAEANDLKGIIDIADFNSEELGTDK 108

Query: 128 EKAGLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           E    L  + + F   EL   +     D ++ + YE L+R+F  +  +    F TP +V 
Sbjct: 109 EAVDKLSGLVEIFQKPELDFTNNRAGGDDILGDAYEFLMRKFAQDSGKSKGQFYTPGEVS 168

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   ++         ++     T+YDP CG+G  L  A +         + P  +  +G
Sbjct: 169 RIMAKVI------GIDKATDPSMTVYDPACGSGSLLIRAAD---------EAPCEISIYG 213

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGK 303
           QE +  T  +    +++    +         +       ++     K F+Y + NPPF  
Sbjct: 214 QEKDNSTAGLARMNLVLHNKGAGVIVGNKSTLSAPQYKDENNPELLKTFNYIVVNPPFSD 273

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   D   +      G       G+P   +G   +L+H+   L+      G+AAI+L   
Sbjct: 274 KSWMD--GITIPDSYGRYSEAVLGVPPEKNGDYAWLLHVLKSLK----STGKAAIILPHG 327

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G A   E++IR+ +++   I+ I+ LP +LF+ T I   + +L      +R G + 
Sbjct: 328 VLFRGNA---EADIRKRIIDRGYIKGIIGLPANLFYGTGIPACILVLDKEDAADRTG-IF 383

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTF---GYRRI 478
           +I+A+  +    N+ +    + +    +I+  +++ +  + K++R +            +
Sbjct: 384 MIDASKGYVKDGNKNR----LREQDIHKIVTTFLTMDESDPKYARFVPNEEIKVTNEYNL 439

Query: 479 KVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
            + R +  S   D   + A L   I    +  + + + + 
Sbjct: 440 NIPRYIDSSEPEDLQDIDAHLNGGIPETDVESMAEYWAVY 479


>gi|319954804|ref|YP_004166071.1| type i restriction-modification system, m subunit [Cellulophaga
           algicola DSM 14237]
 gi|319423464|gb|ADV50573.1| type I restriction-modification system, M subunit [Cellulophaga
           algicola DSM 14237]
          Length = 905

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/597 (19%), Positives = 227/597 (38%), Gaps = 77/597 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W++ + L G    + +   +L    ++ +                    + 
Sbjct: 4   KKSELYSSLWESCDALRGSMDASQYKDYVLVMLFIKYISD----------------KWAG 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS--FSDNAKAIFEDFDFSSTI 124
                     G SF +      +  GST+  + +   I +   + N  A F DF+  + +
Sbjct: 48  QPYAPITIPKGSSFAD----MTALKGSTDIGDQINKKILAPIAAANNLAKFPDFNDPTKL 103

Query: 125 ARLEKAGLLYKICKNF---SGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              ++                ++   +    D ++ + YE L+R F ++  +    F TP
Sbjct: 104 GSDKEMIDTLDALIGIFENPALDFSKNKADGDDILGDAYEFLMRHFATQSGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V     +++   +     +      T+YDPTCG+G  L                   +
Sbjct: 164 SEVSRTMASIIGINNVDTNSDI-----TVYDPTCGSGSLLLKVGTEAK---------SKV 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-------KRFH 293
             +GQE +  T  +    M++         + +  I+QG+TLSK LF         K F 
Sbjct: 210 TLYGQEKDATTAGLARMNMILHD-------NPTAEIKQGNTLSKPLFEDPKLEANLKTFD 262

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNG 352
           + ++NPPF  K   +   +     + +  RF   G+P   +G   FL+H+   L+     
Sbjct: 263 FVVANPPFSDKRWSNGLTL----PDDKYNRFADYGIPPSKNGDYAFLLHIVRSLKR---- 314

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+ AI+L    LF G A   ESEIR  L++   I+ I+ LP +LF+ T I   +  +  
Sbjct: 315 NGKGAIILPHGVLFRGNA---ESEIRTNLIKKGFIKGIIGLPANLFYGTGIPAAIIFIDK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYR 471
                R+G + +I+A   +    N+ +    + +   R+I D++ +++  K FSRM+   
Sbjct: 372 ENAANRKG-IFMIDAGKGFIKDGNKNR----LREQDIRRITDVFAAQKEVKGFSRMVSIE 426

Query: 472 TFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ--SFWLDILKPMMQQI 526
                   + + R +      D   + A L+  I    +  L      +  + K + ++I
Sbjct: 427 DISKNEYNLNIPRYIDNQEKEDIQDIEAHLKGGIPIADIDDLSNFWEVYPTLRKSLFEKI 486

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
                  +   E IK       + +   + + +  N + +K+       D   +   
Sbjct: 487 NDKYSNLTIENEQIKDEIYSHPEFERFITQMDSLFNGWKQKNTTVLKALDKGNKPKQ 543


>gi|260655883|ref|ZP_05861352.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella
           anthropi E3_33 E1]
 gi|260629499|gb|EEX47693.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella
           anthropi E3_33 E1]
          Length = 854

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 184/514 (35%), Gaps = 57/514 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-----------LEPTRSAV 55
           +   LA+ IW++A  +    +  ++   IL F   + L               E   S  
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSDKEVKYLKDTAWTDEYIPSLT 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
            +     G    D+  F  +A  + ++T         + +    L ++    + + K +F
Sbjct: 62  EDDAETVGTVQKDIGYF--IAYENLFSTWIAKGKDFSADDVTTALPAFNRLINKSHKKVF 119

Query: 116 EDFDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
               F +    L K           +  +      I +        V+  IYE+LI  F 
Sbjct: 120 SGI-FKTLETGLSKLGETSGARTKAIRDLLYLIKDIPMDGKQ-DYDVLGFIYEYLISNFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   + A +F TP +V  L + ++        +        +YDPT G+G  L +     
Sbjct: 178 ANAGKKAGEFYTPHEVSLLMSEIVAHHLKDRQEI------KIYDPTSGSGSLLINIGKCA 231

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           A    +      ++ + QEL+  T+ +    +++R +  D     + +  +      D  
Sbjct: 232 AR---YIGSEDNILYYAQELKENTYNLTRMNLVMRGIIPDNITTRNADTLEDDWPYFDDD 288

Query: 288 TGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              R          +SNPP+ + W       +  + N        G+         FL+H
Sbjct: 289 DPTRTYNPLYVDAVVSNPPYSQAWNPVGKENDPRYSN-------FGIAPKGKADYAFLLH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               ++      G   IVL    LF    G  E  IRR L+E + I+A++ LP ++FF T
Sbjct: 342 DLFHVKP----DGIMTIVLPHGVLFR---GGEEGTIRRNLIEGNYIDAVIGLPANIFFGT 394

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I T + +L           V +++A+  +        K  ++     ++I+D+  SR +
Sbjct: 395 GIPTIIMVLKQPHGRADYTDVLIVDASKGFEK----AGKNNVLRACDIKKIVDVVTSRTS 450

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
             KFSR++           +  P  +        
Sbjct: 451 VPKFSRVVSLEEIRANDYNLNIPRYVDSSEPAES 484


>gi|238917453|ref|YP_002930970.1| type I restriction enzyme M protein [Eubacterium eligens ATCC
           27750]
 gi|238872813|gb|ACR72523.1| type I restriction enzyme M protein [Eubacterium eligens ATCC
           27750]
          Length = 892

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 118/617 (19%), Positives = 227/617 (36%), Gaps = 65/617 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L   +W + + L G    +++   IL    ++ +            E    F  ++
Sbjct: 4   KKTQLYASLWASCDKLRGGMDSSEYKDYILTLLFMKYVTDKF--KNKGAYEDIKVFDKAH 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSST 123
                  K  G SF    +  ++  G  N    ++  IA  +D   + K + +   F+  
Sbjct: 62  DKDPDPEKRTGCSF----DDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDE 117

Query: 124 IA---RLEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                  E    L  +   F   EL         D ++ + YE+L+R+F +E  +    F
Sbjct: 118 KKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGKSKGQF 177

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   ++                T+ DP CG+G  L  A++           P
Sbjct: 178 YTPAEVSRILANVV------GISHCTDASATVCDPACGSGSLLIRAIDAA---------P 222

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             ++ +GQE E  T  +     ++ R      +  +           D    +RF Y ++
Sbjct: 223 FPIMGYGQEKESTTAGLAKMNAVLHRKAEIIIKSGNTFSNPQYMDKSDNSVLERFDYIVA 282

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK-ISDGSMLFLMHLANKLELPPNGGGR 355
           NPPF  K  +D  A        E GRF G G      +G   +LMH+   L+      G+
Sbjct: 283 NPPFSMKNWRDGIA------GKEYGRFEGYGDMPPEKNGDYAWLMHILKTLK----SNGK 332

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA++L    LF G A   E+ IR  +++   I+ I++LP +LF+ T IA  + ++     
Sbjct: 333 AAVILPHGVLFRGNA---EATIRETIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGA 389

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDY--- 470
             R+G + +I+A+  +    N+ +    + +    +I+  +  +   + K++R +     
Sbjct: 390 ANRQG-IFMIDASRGYVKDGNKNR----LRERDIYRIITTFNEQITTDPKYARFVPNDEI 444

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ--SFWLDILKPMMQQIY 527
                  + + R +  +   D   + A +   I    +  L +    +  +   ++  I 
Sbjct: 445 EKKNEYNLNITRYIDSTDPEDIQDIYAHIHGGIPAIDIDGLSKYWKVFPSLKSELLSAIS 504

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587
              ++ +   ESI+    K  +   SK            K      ++ +N E +     
Sbjct: 505 EKYYSLNVEHESIRQTIYKNTEF--SKYGEKLDEAFAAWKAKEYPVLSALNEEVVAREL- 561

Query: 588 TEYENVPYLESIQDYFV 604
                V   + I   F 
Sbjct: 562 ----IVSLAKDIIAEFE 574


>gi|313113033|ref|ZP_07798671.1| type I restriction-modification system, M subunit [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624647|gb|EFQ07964.1| type I restriction-modification system, M subunit [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 848

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/595 (19%), Positives = 217/595 (36%), Gaps = 73/595 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L               E      
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFMFYKFLSDKEVKWLKENDWTDEYLPDLT 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + +    V+      +A  + ++T     S   + +    L+++      + K +F+ 
Sbjct: 62  EDDAETLDTVRKNVGYFIAYENLFSTWISKGSDFKADDVTVALQAFSRLIDPHHKKVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I +        V+  IYE+LI  F + 
Sbjct: 122 V-FATLQTGLSKLGESSGARTKAIRDLIYLIKDIPMDGKQ-DYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +     A 
Sbjct: 180 AGKKAGEFYTPHEVSLLMSEIVAYHLKDREEI------KIYDPTSGSGSLLINIGQCAAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286
              +      +  + QEL+  T+ +    +++R +  D     +   + G TL +D    
Sbjct: 234 YMGNGNN---IKYYAQELKENTYNLTRMNLVMRGILPD-----NIVTRNGDTLEEDWPYF 285

Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                   +        +SNPP+ + W  +         +        GL         F
Sbjct: 286 EENDPVNTYDPLFVDAVVSNPPYSQAWNPNDKENNPRFSD-------YGLAPKGKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    +       G   IVL    LF    G  E  IR+ L++++ I+AI+ LP ++F
Sbjct: 339 LLHDLYHIR----NDGIVTIVLPHGVLFR---GGEEGTIRKNLIDHNNIDAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L   K +     V +I+A+  +        K   +     ++I+D Y  
Sbjct: 392 FGTGIPTIIMVLRKNKKDS---DVLIIDASKGFEK----DGKNNKLRACDIKRIVDAYKE 444

Query: 459 R--ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQS 513
           R  +  KF+R +           + + R +  S   +   + A +   I   +L  L  +
Sbjct: 445 RPEKIEKFARRVSRAEIIQNDYNLNIPRYVDSSEKAESWDIYASMFGGIPEAELQDLS-A 503

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
           +W            P    E++ + ++ + +   L      +F  AF NAFG  D
Sbjct: 504 YWTAFPHLKAALFSP--DNEAYCRLNVANLKNAVLSHPDVVAFKTAFQNAFGDFD 556


>gi|325997725|gb|ADZ49933.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2017]
          Length = 495

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 168/437 (38%), Gaps = 56/437 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--------KY 59
              L N IWK A +L G     DF + +L     R +   +    +             Y
Sbjct: 70  RNELHNTIWKVANELRGSVDGWDFKQYVLGVLFYRYISENIARYHNEYMRNNNFDPSFDY 129

Query: 60  LAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASF----------- 107
            +      ++E    +    F+   S    + L +     +L   + +            
Sbjct: 130 ASLSDEEAEIERKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFTEIEKSSLGT 189

Query: 108 --SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEH 161
              +N K +F D D +S     +   +   L KI +   G++L         V  + YE+
Sbjct: 190 PSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGDAYEY 249

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG+G  L 
Sbjct: 250 LMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCGSGSLLL 301

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                + D              GQE+   T+ +C   M +  +          +I  G T
Sbjct: 302 QFSKVLGDKNVLKG------YFGQEINLTTYNLCHINMFLHDINYSK-----FHIAHGDT 350

Query: 282 LSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           L        + F   +SNPP+  KW  D + +     N E       L   +   + F M
Sbjct: 351 LLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLL---MNDERFSKAGALAPKNAADLAFTM 407

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L    +  G AAIV     L+ G A   E +IR +L++ + I+ ++ALP +LFF 
Sbjct: 408 HMLSYL----SNQGAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIALPENLFFG 460

Query: 401 TNIATYLWILSNRKTEE 417
           TNIAT + +L   K ++
Sbjct: 461 TNIATCILVLKRNKKDD 477


>gi|294660605|ref|NP_853464.2| type I restriction-modification system methyltransferase subunit
           [Mycoplasma gallisepticum str. R(low)]
 gi|284812268|gb|AAP57032.2| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. R(low)]
 gi|284930962|gb|ADC30901.1| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. R(high)]
          Length = 875

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 119/581 (20%), Positives = 228/581 (39%), Gaps = 86/581 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-------RSAVREKY 59
           +   LA  IW  A ++ G+ +  D+   IL F   + L    +         +   +++Y
Sbjct: 2   TKQELAREIWAMANEMRGNIEANDYKDYILGFLFYKYLSDKQDEYFASKNVVKDEDKKQY 61

Query: 60  L-AFGGSNI------------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
           L A   ++             DL  ++            Y+     S      L S+  S
Sbjct: 62  LVALAEADKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFERS 121

Query: 107 FSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
             +  +  F+D   D  + I +L     E++  ++ IC   + I +        ++  +Y
Sbjct: 122 ILEKYEESFKDIFKDLQAGIQKLGNTAYERSEAIWNICNLINKIPITSKQ-DYDILGFVY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP +V  L + +  +    L         ++YDPT  +G  
Sbjct: 181 EYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL------KNVSIYDPT--SGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +     + KI      + QE+   T+ +    +L+  + S     ++   + G
Sbjct: 233 LITLGRELKKIDKNVKIQ----YYAQEVIDTTYNITRMNLLMNDVHS-----VNMFAKCG 283

Query: 280 STLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            TL +D         +  KR    +SNPP+   W  +    +         RF  GL   
Sbjct: 284 DTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKEND--------PRFRYGLAPK 335

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + FL+H    L       G   IVL    LF G +   E +IR+ L+ +D I+AI+
Sbjct: 336 SKSELAFLLHSLYHL----EDHGILTIVLPHGVLFRGGS---ELQIRQNLISHDHIDAII 388

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++FF T I T + +L   KT++ +  V  I+A+  +T   N+ K    +      +
Sbjct: 389 GLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFTKEGNKNK----LQSSDIVR 444

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I D + +RE+   F+R++ +         +  P  +  + +                  L
Sbjct: 445 IYDAFSAREDIPGFARVVSHEEIKANEYNLNIPKYIDLVDNGDN-------------HNL 491

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
           + S +  I    + ++  +      +K+++ ++  K  ++K
Sbjct: 492 YSSIFSGIPHNDIDKLSDFWSTFPTLKKALLNDNGKNYQLK 532


>gi|171779403|ref|ZP_02920367.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282020|gb|EDT47451.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 850

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 126/627 (20%), Positives = 239/627 (38%), Gaps = 61/627 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYL-AFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L    E         +KYL    
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSEQEEKYLKENDWTDKYLCELT 61

Query: 64  GSNID-LESFVKVAGYSFYNTSEY-SLSTLGST----NTRNNLESYIASFSDNAKAIFED 117
             + + +ES  K  GY     + + +    GS     + R+ L ++        K +FE 
Sbjct: 62  EEDPEVVESIQKNLGYFISYNNLFSTWIKKGSDFSVQDVRDALSAFSRLIDSAHKDVFEG 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI-----ELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
              +      +         K  S +     ++  D   D  V+  IYE+LI  F +   
Sbjct: 122 VFDTLQTGLSKLGEGSASQTKAISDLIYLIRDIPMDGKQDYDVLGFIYEYLISMFAANAG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L + ++ +               +YDPT G+G  L +         
Sbjct: 182 KKAGEFYTPHEVSLLMSEIVAEHLKDRESI------KIYDPTSGSGSLLINIGK---SAS 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------ 285
            +      +  + QEL+  T+ +    +++R +  D     + +  +      D      
Sbjct: 233 KYISNKDNIKYYAQELKQNTYNLTRMNLVMRGILPDNIVTRNGDTLEDDWPYFDDKDPIA 292

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +        +SNPP+ + W    D  +KE  +    RF  GL         FL+H    
Sbjct: 293 TYEPLYVDAVVSNPPYSQSW----DPTDKE-TDPRYARF--GLAPKGKADYAFLLHDLFH 345

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++      G   IVL    LF    G  E EIR+ L+E + I+AI+ LP+++FF T I T
Sbjct: 346 IK----SDGIMTIVLPHGVLFR---GGEEGEIRKNLIEQNHIDAIIGLPSNIFFGTGIPT 398

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + IL  ++       V +++A+  +        K   +     ++I+D+ ++REN   F
Sbjct: 399 IIMILKQKRENT---DVLVVDASKGFIK----SGKNNKLRASDIKRIVDVVINRENVANF 451

Query: 465 SRML--DYRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ--SFWLDIL 519
           SR++  D        + + R +  S   +   + A +   I   +L  L    + + ++ 
Sbjct: 452 SRVVSRDEIRNNNYNLNIPRYVDSSEKTESWDIFATMFGGIPKSELEDLSDFWNAFPNLK 511

Query: 520 KPMMQQIYP--YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK--DPRADPVT 575
             + Q+I    Y    S +K+++ S+       + S+            +  D   +   
Sbjct: 512 SDLFQEINASTYQLKVSDIKKAVFSHPEIQQFFETSRKVFSDIPQYMREELIDHINEVHV 571

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDY 602
               E +        E++P ++    Y
Sbjct: 572 QREEEKLAQYIFKRLESMPLIDKYDAY 598


>gi|238018337|ref|ZP_04598763.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748]
 gi|237864808|gb|EEP66098.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748]
          Length = 914

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/645 (17%), Positives = 235/645 (36%), Gaps = 73/645 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L         +     E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFMFYKFLSEKEVKYLKSTGWTDEYLPEVN 61

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS------TNTRNNLESYIASFSDNAKAIFED 117
            S+ ++ + VK     F        + +         +    L ++  + + + K++FE 
Sbjct: 62  ESDHEVATSVKKNIGYFIAYENLFSTWINKGRDFSVQDVTVALNAFNRNINSSHKSVFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K        +  + ++      I +        V+  +YE+LI +F + 
Sbjct: 122 I-FETLQTGLSKLGETDASRSKSISELIHLIKDIPMDGKQ-DYDVLGFVYEYLIEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++ +      K        +YDPT G+G  + +    V  
Sbjct: 180 AGKKAGEFYTPHEVSLLMSDIVAEHLKDRNKIE------IYDPTSGSGSLMINIGQSV-- 231

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +      +  + QEL+  T+ +    +++R +E+D     + +  +      D    
Sbjct: 232 -SKYVTGENKIKYYAQELKRNTYNLTRMNLVMRGIEADNIVTRNGDTLEEDWPYFDENDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +SNPP+ + W+      +  +          GL         FL+H  
Sbjct: 291 LGTYQPLYVDAVISNPPYSQPWDPSDKETDSRYAE-------YGLAPKGKADYAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             +       G   IVL    LF    G+ E  IR+ L+E + I+AI+ LP ++F+ T+I
Sbjct: 344 YHIRP----DGIMNIVLPHGVLFR---GNEEGMIRKNLIEKNKIDAIIGLPANIFYGTSI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +L  ++       V  I+A+  +        K   +     ++I+D  ++REN  
Sbjct: 397 PTIIMVLKQKRENT---DVLFIDASKGFIK----DGKNNKLRSSDIKKIVDTVINRENID 449

Query: 463 KFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD-I 518
           KFSR++  D        + + R +  S  L+   + A +  ++   ++  L + +     
Sbjct: 450 KFSRVVTRDEIRQNDYNLNIPRYVDSSENLEIWDIFASMFGELPISEVDELSEYWKAFPT 509

Query: 519 LKPMMQQIYPYGWAESFVKESIK------SNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           L+  + +     + +  V    K         A     K +      F+     +   + 
Sbjct: 510 LRASLFKNTSSAYCKIAVDNVTKVIRESSDVSAFDEAFKGNFRNFKVFLYDLLIEKVESQ 569

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYID 617
            +  +      D       N+P ++  + Y +        D +ID
Sbjct: 570 NIVKIKDIITEDIFNRLS-NIPLVDKYEAYQL------FADEWID 607


>gi|315636819|ref|ZP_07892044.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315478873|gb|EFU69581.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 811

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 220/555 (39%), Gaps = 65/555 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W +A++L G    +++   +L    ++ +    +   S +    +  G S 
Sbjct: 4   KKTELYSSLWASADELRGGMDASEYKNYVLTLLFMKYVSDKKDDANSLID---VPQGASF 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            D+ +                    G     + +   IA  ++  + K I +  DF+ + 
Sbjct: 61  KDMVALD------------------GDKEIGDKINKIIAKLAEKNDLKGIIDTADFNDST 102

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 +    L K+ K F  + L  +T   D ++ + YE+L+R F +E  +    F TP
Sbjct: 103 KLGSGKQMVDTLSKLIKIFDNLNLGSNTAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 162

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +       P      E+    +T+YDPTCG+G  L  A +           P  L
Sbjct: 163 SEVSTIL------PQIIGIDENTTAKQTIYDPTCGSGSLLLKASSLA---------PNGL 207

Query: 241 VPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
             +GQE E  T A+C   M++    E+         +       +       F + ++NP
Sbjct: 208 SIYGQEKEVSTTALCKMNMILHNNAEAVIAPGGQSTLANPFFEDEPDVKLTTFDFVVANP 267

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K     + VE   K      F    P   +G   FL+H+   ++      G+ A++
Sbjct: 268 PFSLKAWT--NGVESPDKYSRFEGFV--TPPEKNGDYAFLLHICKSIK----SNGKGAVI 319

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E  IR  L+    I+ I+ LP +LF+ T I   + +L   K + R 
Sbjct: 320 LPHGVLFRGNA---EGVIREKLIRKGWIKGIIGLPANLFYGTGIPACIIVLDKEKAQNRS 376

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG--YR 476
           G + +I+A+  +    N+ +    +      +I+D +    E  K+S+M+  R       
Sbjct: 377 G-IFMIDASKGFKKDGNKNR----LRSQDVHKIVDTFNKTLEIEKYSKMVTLRDIELNEY 431

Query: 477 RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            + + R +  S   D   L A L   I    +  L + +  D+ K +  +++     + +
Sbjct: 432 NLNIPRYIDSSENEDIQDLYAHLNGGIPNVDIENLKEYW--DVFKTLKSELFAPNIKDGY 489

Query: 536 VKESIKSNEAKTLKV 550
               I+SNE K+  +
Sbjct: 490 SNAKIESNEIKSFIL 504


>gi|332297066|ref|YP_004438988.1| type I restriction-modification system, M subunit [Treponema
           brennaborense DSM 12168]
 gi|332180169|gb|AEE15857.1| type I restriction-modification system, M subunit [Treponema
           brennaborense DSM 12168]
          Length = 866

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 111/584 (19%), Positives = 211/584 (36%), Gaps = 60/584 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A ++    +  ++   IL F   + L                    F 
Sbjct: 2   NKQQLATKIWESANEMRSKIEANEYKDYILGFIFYKYLSETELRFAKKNGCTDADIKKFS 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            ++ +  +++K      +A  + ++T          +N R+ L ++    +   K +F+ 
Sbjct: 62  ENDAETATYIKSNIGYFIAYENLFSTWITKGKDFDVSNVRDALSAFSRLINPAHKKVFDG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++  + L K           + K+    + I +        V+  +YE+LI  F + 
Sbjct: 122 I-FNTLQSGLSKLGETAASQTSAISKLLALINDIPMDGKQ-DYDVLGFVYEYLISMFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++       F         +YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSLLMSEVI------AFHLKNRKEIKIYDPTSGSGSLLINIGRSVA- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286
              H      +  + QEL+  T+ +    +++R +  D     + +  +      D    
Sbjct: 233 --KHIDNKNNIKYYAQELKQNTYNLTRMNLIMRNILPDNIVTRNADTLESDWPYFDENDP 290

Query: 287 ---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +        +SNPP+ +KW+      +  + N        GL   S     FL+H  
Sbjct: 291 VHTYDPLYVDAVVSNPPYSQKWDSTNKENDPRYSN-------YGLAPKSKADYAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G   IVL    LF    G  E EIR+ L+E D I+AI+ LP ++FF T I
Sbjct: 344 YHVKP----DGIMTIVLPHGVLFR---GGEEGEIRKKLIEKDQIQAIIGLPANIFFGTGI 396

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
            T + +L  ++T+     V +++A+  +        K   +     ++I D    R    
Sbjct: 397 PTVIIVLRQKRTDS---DVLIVDASKGYIK----EGKNNKLRSSDIKRITDTVNGRLSIP 449

Query: 463 KFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            +S ++           + + R +  S   +   L                 +FW     
Sbjct: 450 GYSSLVKKEVIRQNEYNLNIPRYVDSSDTSESYDLYSSLFGGIPNNEIEKLNNFWEKFSA 509

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
                  P    +S+   ++K  +         K F   F   F
Sbjct: 510 LKKALFTPVN--DSYSALAVKDIKECITNHADIKKFEKLFDFHF 551


>gi|295107905|emb|CBL21858.1| type I restriction system adenine methylase (hsdM) [Ruminococcus
           obeum A2-162]
          Length = 852

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 119/629 (18%), Positives = 235/629 (37%), Gaps = 67/629 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---------LEPTRSAVRE 57
           +   LAN IW++A  +    +  ++   IL F   + L                      
Sbjct: 2   NKQQLANRIWESANRMRSKIEANEYKDYILGFIFYKYLSDTEVEWLKENDFTDEDIRTLA 61

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            +        +L  F  ++  + Y+T     +    +N  + L ++    S   K +FE+
Sbjct: 62  DFETVKYVQDNLGYF--ISYENLYSTWINMGNDFSVSNVTDALSAFSRLISPTHKPVFEN 119

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F +    L K           +  + +    I +        V+  IYE+LI +F S 
Sbjct: 120 I-FRTLETGLSKLGDTSGARTKAIRGLLQLIRDIPMDG-RQDYDVLGFIYEYLIEKFASN 177

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +    VA 
Sbjct: 178 AGKKAGEFYTPHEVSFLMSEIVAHHLRDRNEI------KIYDPTSGSGSLLINIGRSVA- 230

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
              +      +  + QEL+  T+ +    +++R ++ D     + +  +      D    
Sbjct: 231 --KYVGSDNNIKYYAQELKENTYNLTRMNLIMRGIKPDNIVTRNGDTLEEDWPFFDDNDP 288

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +        +SNPP+ + W    D   KEH +    RF  GL         FL+H  
Sbjct: 289 VNTYDPVYVDAVVSNPPYSQVW----DPANKEH-DPRYSRF--GLAPKGKADYAFLLHDL 341

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G   IVL    LF    G  E EIR+ L+EN+ I+ I+ LP ++F+ T I
Sbjct: 342 FHMKP----DGVMTIVLPHGVLFR---GGEEGEIRKKLIENNHIDTIIGLPANIFYGTGI 394

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
            T + +L   K +     + +I+A+  +        K   +     ++I+D+  +R +  
Sbjct: 395 PTIVMVL---KQKRDNTDILIIDASKGFVK----DGKNNKLRACDIKKIVDVVKARKKIE 447

Query: 463 KFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ---SFWL 516
           ++SR++           + + R +  S   +   + A +   I  R+++ L +   +F  
Sbjct: 448 RYSRVITKDEIRRNDYNLNISRYVDSSEKAENWDIYATMLGGIPKREINELEEYWSAFPQ 507

Query: 517 DILKPMMQQIYPYGWA--ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
              +  ++   PY     +          + +  +    K F    +N       + + +
Sbjct: 508 LKKELFVETDSPYTELAIKDIKNYVENHTDIQQFRETFQKQFSNFKLNLKDILLDQMENM 567

Query: 575 TDVNGEW-IPDTNLTEYENVPYLESIQDY 602
               GE  + D      + +P ++  + Y
Sbjct: 568 IISQGESNLSDDIFQRLKMIPLVDKYEAY 596


>gi|126465661|ref|YP_001040770.1| N-6 DNA methylase [Staphylothermus marinus F1]
 gi|126014484|gb|ABN69862.1| N-6 DNA methylase [Staphylothermus marinus F1]
          Length = 572

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 93/523 (17%), Positives = 199/523 (38%), Gaps = 50/523 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + + K A+ +     ++     IL     +++    +       ++ +  G ++
Sbjct: 76  TRGDLESILKKAADLIRTRVDYS----FILVLLFYKKISDQWKLEFQRTYKELVEQGYAS 131

Query: 67  IDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFEDF 118
            + +   +   +  F    EY    +     +  L  Y       I   ++  + IF++F
Sbjct: 132 EEAKELARGKYFHQFQIPEEYLWDNI--VKHKGELHEYFSKALKKIGELNEELRPIFDNF 189

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF    +  E + +L ++ + F  + L        ++ + YE L+  F    ++   +  
Sbjct: 190 DFHIFASNRENSEILRQLVELFDSVPLI--DTSPDILGDAYEWLLMMFAPTKAKE-GEVF 246

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L           P     + DP  G+GG L  +  ++ +     +   
Sbjct: 247 TPREVIRLLVEIL----------DPKPGYKILDPAAGSGGMLIISYKYIEEKHGREEA-D 295

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQE   +T A+    M I  +        ++ I+ G +L    F    +   L+N
Sbjct: 296 KLYLFGQEANAKTAALAKMNMYIHGI-------ANQKIEVGDSLLYPKFELGEWDIVLAN 348

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+ +    ++   + E           G          ++  +    +      G+  +
Sbjct: 349 PPWNQDGYNEQVLKKNEKYRLIY---KYGYTPSQTADWAWIQLMLAAAKPQ----GKVGV 401

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  LF    G  E  IR  ++E DL+E ++ LP  LF+ T     + I +  K +ER
Sbjct: 402 VIDNGALFR---GGREKSIRSKIIEEDLVETVILLPEKLFYNTGAPGAIIIFNKNKPQER 458

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYRR 477
           R K+  INA++ +    N  +  R ++     +I   Y   +E   FSR++         
Sbjct: 459 RNKILFINASNEYEKHPNIRRLNR-LSKQNIEKIAKTYYEYKEIPGFSRIVGLSEIRENN 517

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             +   L ++  ++   +  ++ +   ++L  + +       K
Sbjct: 518 YNLNVTLYVTPPIE---IEEIDLEKELQELIEIEKQAKTARDK 557


>gi|94263927|ref|ZP_01287730.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93455672|gb|EAT05851.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 425

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 180/445 (40%), Gaps = 49/445 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----- 55
           M    G   SL ++IW  A  + G      + + ILP    +RL    +   + +     
Sbjct: 1   MANNNGRGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDEVNRIAAEVG 60

Query: 56  -REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA 111
            R+K      ++  L  F           S +S+    S             IA  +   
Sbjct: 61  SRKKAFQLVKADHKLVRFYLPLLPDDPEDSVWSVIRKLSDKIGEGVTTHMRAIAKENPGL 120

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + I +  DF++T    R      L  + +  S   L  + V   ++   YE+LIR+F   
Sbjct: 121 QGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFAEG 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  + + +L           P     +YDPTCG+GG L      + +
Sbjct: 181 GGQSAGEFYTPPEVGAIMSKVL----------QPEPGMEIYDPTCGSGGLLIKCEIAMEE 230

Query: 230 CGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                K     L  +GQE   +T A+    M+I  +E +           G T     F 
Sbjct: 231 AAKGKKRTVAPLKLYGQEYTADTWAMANMNMIIHDMEGEIEI--------GDTFKNPKFR 282

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMH 341
            K+     F   ++NP + + W       E ++ N EL RF  G G P        ++ H
Sbjct: 283 NKQGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKFSADWGWVQH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L    N  GRAA+VL +     G   +G   E  +R+W +++DLIE+++ LP +LF
Sbjct: 338 MHASL----NEKGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPENLF 393

Query: 399 FRTNIATYLWILSNRKTEERRGKVQ 423
           + T     +  L+  K+++R+GKV 
Sbjct: 394 YNTTAPGIVLFLNKAKSKKRKGKVL 418


>gi|167761133|ref|ZP_02433260.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
 gi|167661252|gb|EDS05382.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
          Length = 890

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 105/528 (19%), Positives = 203/528 (38%), Gaps = 58/528 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L   +W + + L G    +++   IL    ++ +            E    F  ++
Sbjct: 4   KKTQLYASLWASCDKLRGGMDSSEYKDYILTLLFMKYVTDKF--KNKGAYEDIKVFDKAH 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSST 123
                  K  G SF    +  ++  G  N    ++  IA  +D   + K + +   F+  
Sbjct: 62  DKDPDPEKRTGCSF----DDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDE 117

Query: 124 IA---RLEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                  E    L  +   F   EL         D ++ + YE+L+R+F +E  +    F
Sbjct: 118 KKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGKSKGQF 177

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   ++                T+ DP CG+G  L  A++           P
Sbjct: 178 YTPAEVSRILANVV------GISRCTDSSATVCDPACGSGSLLIRAIDAA---------P 222

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             ++ +GQE E  T  +     ++ R      +  +           D    +RF Y ++
Sbjct: 223 IPIMGYGQEKESTTAGLAKMNAVLHRKAEITIKSGNTFSNPQYLDKSDNSILERFDYIVA 282

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPF  K  +D           E GRF G G  P   +G   +LMH+   L+      G+
Sbjct: 283 NPPFSMKNWRDGLK--------EYGRFEGYGDTPPEKNGDYAWLMHILKTLK----SNGK 330

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA++L    LF G A   E+ IR  +++   I+ I++LP +LF+ T IA  + ++     
Sbjct: 331 AAVILPHGVLFRGNA---EATIREAIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGA 387

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDY--- 470
             R+G + +I+A+  +    N+ +    + +    +I+  +  +   + K++R +     
Sbjct: 388 ANRQG-IFMIDASRGYVKDGNKNR----LRERDIYRIITTFNEQITTDPKYARFVPNDEI 442

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
                  + + R +  +   D   + A +   I    ++ L + + + 
Sbjct: 443 EKKNEYNLNITRYIDSTDPEDIQDIYAHIHGGIPAVDINSLSKYWDVF 490


>gi|319901495|ref|YP_004161223.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
 gi|319416526|gb|ADV43637.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
          Length = 783

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 102/531 (19%), Positives = 204/531 (38%), Gaps = 79/531 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + + + +W + + L G    + +   +L    ++ L                      
Sbjct: 4   KKSQIYSTLWNSCDALRGSMDASQYKDYVLMILFIKYLSD------------------KE 45

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-----KAIFEDFDFS 121
            D +S   +     ++     +   G  +    +   + +  +       +    +F+  
Sbjct: 46  SDEDSIFTIPDGCRFSD---FVLLKGDDHIGEQINKKLEAIKEANAMFLNRLALPNFNDP 102

Query: 122 STIAR-LEKAGLLYKICKNFSGIELHPD---TVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           S + +  E    L  +   F   +L      T  D ++ + YE+L++ F +E  +    F
Sbjct: 103 SKLGKPKEMRETLSNLIAAFESEDLDFSKNRTADDDILGDAYEYLMKNFAAESGKSKGQF 162

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   +L         E      T+YDPTCG+G  L  A+          + P
Sbjct: 163 YTPAEVSRVMAKML------HLTEFTSPSTTIYDPTCGSGSLLLRAI---------GETP 207

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFH 293
               P+GQE +  T ++ +  ML+  +++         I+QG T++   FT     K F 
Sbjct: 208 NGATPYGQEKDNSTASLAILNMLLHGVDTAT-------IEQGDTINSPEFTEGGQLKTFD 260

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSMLFLMHLANKLELPPNG 352
            C++NPPF  K        +    +    R+   L      G   FL+HL   ++    G
Sbjct: 261 VCVANPPFSTKSWLGAAGKD----DAVYHRWTAELCPPDKCGDYAFLLHLIASMK---PG 313

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A +L    LF G A   E EIR+ ++    IE IV LP ++FF T I   + +++ 
Sbjct: 314 TGRGACILPHGVLFRGNA---EYEIRKHIIRQGWIEGIVGLPANIFFGTGIPASIILINK 370

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           +    R+G +  ++A D +    N+ +    + +   ++I+D + +R +   +++ +   
Sbjct: 371 QGAANRKG-IFFVDAKDGFVKDGNKNR----LREQDIKRIVDTWNARHDVPNYAKFVPIS 425

Query: 472 -----TFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWL 516
                      + + R ++ +       + A L   I    +  L   + +
Sbjct: 426 GENSIEANDYNLNIPRYIQPADTEICQDIDAHLHGGIPKHDVEQLSAYWTV 476


>gi|3581984|emb|CAA09337.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 396

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 100/428 (23%), Positives = 163/428 (38%), Gaps = 56/428 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW  A ++ G     DF + +L     R +        E    +V+
Sbjct: 1   MTSL-QQRAELHRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSVQ 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              +A      +++         F   S+   +     NT ++L + + S          
Sbjct: 60  YAGMADSDIGDEIKDDAVRTKGYFIAPSQLFCNVANGANTNDHLNADLNSIFVAIESSAS 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
                 + K +F DFD +S        EK   L  + K   G+ L   D     +  + Y
Sbjct: 120 GYPSEADIKGLFADFDTTSNRLGSTVKEKNIRLAAVLKGVEGLALGDFDAHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  
Sbjct: 180 EFLISNYAANGGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  +              GQE+   T  +    M +  +  D       +I+ G
Sbjct: 232 LLQAKKHFDNHIIEDG------FFGQEINHTTFNLARMNMFLHNINYDK-----FDIRLG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL    F  ++ F   +SNPP+  KW    D      +     RF P   L   S    
Sbjct: 281 NTLLAPEFKDEKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +  GRA IV      + G A   E +IR++L++++ +E +++L  +
Sbjct: 336 AFVLHALNYL----SAKGRAPIVCFPGIFYRGGA---EQKIRKYLVDSNYVETVISLAPN 388

Query: 397 LFFRTNIA 404
           LFF T IA
Sbjct: 389 LFFGTTIA 396


>gi|110003975|emb|CAK98315.1| hsdm protein typeIrestriction enzyme [Spiroplasma citri]
          Length = 509

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 114/554 (20%), Positives = 219/554 (39%), Gaps = 75/554 (13%)

Query: 1   MT--EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE- 57
           MT  E       L + +W  +  L G  + +++ + IL     R L   ++       + 
Sbjct: 1   MTTHEKQNVQQQLFSKLWDISNTLRGTMEPSEYKEYILGLIFYRYLSDNVQSIIEKDLKI 60

Query: 58  -------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT---------RNNLE 101
                          N  LE         +Y   EY    + +            R   E
Sbjct: 61  EGIDYQTALTDEKYRNDFLEVLYDNDSAGYYIEPEYLWQEIINKINIGKFDIFLLRKAFE 120

Query: 102 SYIASF-----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             I S          + +F+  D  S+     +A       K  + + L  +     ++ 
Sbjct: 121 KLIESTIGYSSEKEFENLFDSVDLDSSKLGKTEAEKS----KIIAKVMLKINESEIDILG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F SE  + A +F TP+ V  L   L+         +    I+T+YDPTCG+
Sbjct: 177 DAYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYDPTCGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L      +           I   +GQEL+  ++ +    M++  L+ +       NI
Sbjct: 229 GSLLLRVYKELK----------IGHLYGQELKTNSYNIARMNMMLHGLKYNK-----FNI 273

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G TL  D F G+ F   ++NPP+   W  ++  +  E +    G+  P     +    
Sbjct: 274 YNGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDE-RFSAYGKLAP----KTKADF 328

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ ++  KL    +  G  A V+    LF G A   E  IR++++E + I+ I++LP +
Sbjct: 329 AFIQNMIYKL----SDNGVMAAVIPRGILFRGNA---ELIIRKYMIEKNWIDNIISLPVN 381

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +F+ T+I T + ++   K +     +  I+A+  +    N+      + D    +I++I+
Sbjct: 382 MFYGTSIPTCIIVMKKCKID---NSILFIDASKEFQKQGNK----NTLTDKNIIKIINIF 434

Query: 457 VSREN-GKFSRMLDYR--TFGYRRIKVLRPLRMSFILDKTGLARLEADITW--RKLSPLH 511
             R+N  KFS ++D          + + R +  +   +   +  L+ ++    +++  L 
Sbjct: 435 NKRKNIDKFSNLVDIEIIKENDYNLNIARYVDNTEEKEIINIKALQDNLINNEKEIQKLD 494

Query: 512 QSFWLDILKPMMQQ 525
           + F L +   ++  
Sbjct: 495 EEFNLMLKDLVINN 508


>gi|56419915|ref|YP_147233.1| type I restriction-modification system DNA methylase [Geobacillus
           kaustophilus HTA426]
 gi|56379757|dbj|BAD75665.1| type I restriction-modification system DNA methylase [Geobacillus
           kaustophilus HTA426]
          Length = 503

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/551 (17%), Positives = 188/551 (34%), Gaps = 83/551 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +++ A  + G     D+   +LP   LR L    E  R  + +     G      +  ++
Sbjct: 1   MFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPGSDWYTEDDEMR 60

Query: 75  V----------AGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFED 117
                      A   F    E S S +             +N    +   +   + I   
Sbjct: 61  QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPELEGILPR 120

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
               S +        +  + + FS      +T     ++   YE+ I  F +       +
Sbjct: 121 IYQGSNLP----PENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V L  A+L                 ++DP CG+GG    +  +  +  +    
Sbjct: 177 FFTPSSIVKLLVAMLEP-----------KSGIVFDPACGSGGMFIQSEEYAPNKHA---- 221

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L  +GQE    T  +    +L+  + ++         + G +L  D F   +  Y +
Sbjct: 222 ---LSFYGQENVVTTVRLGKMNVLLHGINAEI--------RLGDSLLNDQFPDLKADYVI 270

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF +K        + + +         G    S+ + +++ H    L    N  G A
Sbjct: 271 ANPPFNQKDWGADRLSKNDPRLI-------GPVTNSNANYMWMQHFLYHL----NDTGTA 319

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT- 415
             V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS  +  
Sbjct: 320 GFVMANGAMTTNV--KEEKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDG 377

Query: 416 ----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------NG 462
                 R+ ++  I+A  + T +    +K++ ++ ++  +I  +Y + +           
Sbjct: 378 KNGYRARKNEILFIDARKMGTLV---SRKQKALSKEEIDKIAAVYRAYKYDGAEGYEDIA 434

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F ++           K+   + +   +        E      K++ L Q       +  
Sbjct: 435 GFCKVATIEEVRANDYKLTPGIYVGTEVSNEDDVPFE-----EKMAELTQRLLEQFEESN 489

Query: 523 MQQIYPYGWAE 533
             Q       E
Sbjct: 490 RLQEKIKQDLE 500


>gi|163814568|ref|ZP_02205957.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759]
 gi|158450203|gb|EDP27198.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759]
          Length = 889

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/528 (18%), Positives = 203/528 (38%), Gaps = 59/528 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W + + L G    + +   IL    ++ +    +  +      +      N
Sbjct: 4   KKTELYSSLWASCDALRGGMDASQYKDYILTLLFMKYVTDKYKGQKYGDLTVFDKANDPN 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDFSST 123
            D E   K  G SF    +  ++     N    ++  IA     ++  K + +   F+  
Sbjct: 64  PDPE---KRTGCSF----DDFIALKNKKNIGEGIDKIIARLAEVNEGLKGVIDIAHFNDE 116

Query: 124 IARLEKAGLLYKICKNFS-----GIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +   ++ K+ K  +      ++   + V  D ++ + YE+L+R F SE  +    F
Sbjct: 117 AKIGKDKEMVDKLTKLIAIFQRPELDFSKNKVEGDDIIGDAYEYLMRNFASESGKSKGQF 176

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   ++         +      T+ DP CG+G  L  A+          + P
Sbjct: 177 YTPAEVSRILAKII------GIDKCTDHDATVCDPACGSGSLLIRAL---------AEAP 221

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQE +  T  +     ++    +      +         + +    +RF+Y ++
Sbjct: 222 FEISGYGQEKDGSTAGLAKMNAVLHNKATIRIMAGNTFSDPQFMKTDNPSELERFNYIVA 281

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRF-GPGL-PKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPF  K   D           E GRF G G  P   +G   +LMH+   L+      G+
Sbjct: 282 NPPFSLKNWSDGLK--------EFGRFSGYGDRPPEKNGDYAWLMHILKTLK----STGK 329

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA++L    LF G A   E+ IR+ +++   I+ I++LP +LF+ T I   + ++     
Sbjct: 330 AAVILPHGVLFRGNA---EATIRQTIVDKGWIKGIISLPPNLFYGTGIPACILVIDKEGA 386

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF 473
           E R G + +I+A   +         +  + +    +I+  +  +   + K++R +  +  
Sbjct: 387 ENRAG-IFMIDAGKGYVK----DGSKNRLREQDIYRIVTTFNEQITTDPKYARFVPNKEI 441

Query: 474 GY---RRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
                  + + R +  S   D   + A +   I    +  L + +   
Sbjct: 442 KEKNGYNLNISRYIDSSAPEDIQDIYAHIHGGIPAADIDALERFWTAF 489


>gi|212639883|ref|YP_002316403.1| type I restriction-modification system methyltransferase subunit
           [Anoxybacillus flavithermus WK1]
 gi|212561363|gb|ACJ34418.1| Type I restriction-modification system methyltransferase subunit
           [Anoxybacillus flavithermus WK1]
          Length = 515

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/556 (17%), Positives = 189/556 (33%), Gaps = 83/556 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
                +++ A  + G     D+   +LP   LR L    E  R  + +            
Sbjct: 8   DFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPSSDWYTE 67

Query: 70  ESFVKV----------AGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAK 112
           +  ++           A   F    E S S +             +N    +   +   +
Sbjct: 68  DDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPELE 127

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            I       S +     A  +  + + FS      +T     ++   YE+ I  F +   
Sbjct: 128 GILPRIYQGSNLP----AENVAGLIEIFSRDVFSANTHESVDILGRTYEYFISSFAASEG 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V L  A+L                 ++DP CG+GG    +  +  +  
Sbjct: 184 NRGGEFFTPSSIVKLLVAMLEP-----------KSGIVFDPACGSGGMFIQSEEYAPNKH 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +       L  +GQE    T  +    +L+  + ++         + G +L  D F   +
Sbjct: 233 A-------LSFYGQENVVTTVRLGKMNVLLHGINAEI--------RLGDSLLNDQFPDLK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF +K        + + +         G    S+ + +++ H    L    N
Sbjct: 278 ADYIIANPPFNQKDWGADRLSKNDPRLI-------GPVTNSNANYMWMQHFLYHL----N 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS
Sbjct: 327 DTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLS 384

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--- 463
             +        R+ ++  I+A  + T +    +K++ ++ ++  +I  +Y + +  +   
Sbjct: 385 KNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKALSKEEIDKIAAVYHAYKYEEAEG 441

Query: 464 ------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
                 F ++           K+   + +   +        E      K++ L Q     
Sbjct: 442 YEDVTGFCKVATIEEVQANDYKLTPGIYVGTEVSDEDDTPFE-----EKMAELTQRLLEQ 496

Query: 518 ILKPMMQQIYPYGWAE 533
             +    Q       E
Sbjct: 497 FEESNRLQEKIKRDLE 512


>gi|302190880|ref|ZP_07267134.1| type I restriction-modification system DNA methylase [Lactobacillus
           iners AB-1]
          Length = 432

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 177/453 (39%), Gaps = 56/453 (12%)

Query: 76  AGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
               F+   E    T+             +N    I + +   K +      S  + +  
Sbjct: 1   MENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKDVLPKNYASPDLDK-- 58

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              +L  +   F+  I++  +   + ++   YE+ I +F  +  +   +F TP  +V   
Sbjct: 59  --QVLGDVVDIFTNRIDMSDNKQSEDLLGRTYEYCIAKFAEKEGKSGGEFYTPSSIVKTL 116

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            ++L   D+            +YD  CG+GG    +   +     +      +  +GQE 
Sbjct: 117 VSILKPFDNC----------RVYDCCCGSGGMFVQSAKFIRAHSGNRG---SISIYGQEA 163

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             +T  +    M IR +++D          Q  T + DL    +  + L+NPPF      
Sbjct: 164 NADTWKMAKMNMAIRGIDAD------LGPYQADTFTNDLHPTLKADFILANPPFNYSPWN 217

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +  ++         R+  G P   + +  ++ H+ + L       G+  +VL++  L  
Sbjct: 218 QEKLLDDV-------RWKYGTPPAGNANYAWIQHMIHHL----APNGKIGLVLANGAL-- 264

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
                GE EIR+ ++E+DLIE I++LP  LF+  +I   LW +S  K  +++GK   I+A
Sbjct: 265 SSQNCGEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISKNK--KQKGKTVFIDA 322

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDYRTFGYRRIKVL 481
             +   +    +K R   ++  +++ D + + +NG       F  +   +    +   VL
Sbjct: 323 RKMGHMV---DRKHRDFTEEDIQKLADTFEAFQNGTLEDEKGFCSVATIQDIAKQDY-VL 378

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            P R   I ++        +   +  S L   F
Sbjct: 379 TPGRYVGIEEQEDDGEPFDEKMTKLTSELSDMF 411


>gi|291542118|emb|CBL15228.1| type I restriction system adenine methylase (hsdM) [Ruminococcus
           bromii L2-63]
          Length = 511

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/533 (20%), Positives = 204/533 (38%), Gaps = 85/533 (15%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTR-----------SAVREKYLAFGGSNIDLESFVK 74
              +++   IL F   R L    E                + E Y A   S  DL  ++K
Sbjct: 1   MDASEYKNYILAFMFYRYLSEHQEQYLLSNNVIDLEDGQTINEAYKAMAVSE-DLADYIK 59

Query: 75  ----VAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSD----------NAKAIFED 117
                 GY+      ++       N     ++ ++  A+F +          + + +F D
Sbjct: 60  DISSALGYAIEPNDTWASLVEKIENSEVIPSDYQTIFANFEEHAKLNKEAEKDFRGVFND 119

Query: 118 FDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            +   +    +  E+A  L +I K     +   D   D ++  IYE LI RF +   +  
Sbjct: 120 VNLGDSRLGSSTNERAKSLNRIVKLVDSTQYKSDDGKD-ILGEIYEFLIGRFAATAGKKG 178

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  +   ++ D       +    + ++YDPTCG+G  L    + V    +  
Sbjct: 179 GEFYTPHEVSKVLAKIVTDDV-----KESDSVFSVYDPTCGSGSLLLTVQDEVPGGNNTG 233

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
                +  +GQEL   T+ +    +++  +        + +  +          G    +
Sbjct: 234 ----AVKFYGQELNTTTYNLARMNLMMHGVSFQNMSLSNADTLESDWPDGPDVKGIDHPR 289

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPP+   W+  +  + K+ +  + G+  P     +     F++H    L    
Sbjct: 290 SFDAVVANPPYSAHWDNSETKL-KDPRFKDYGKLAP----KTKADYSFVLHGLYHL---- 340

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN---DLIEAIVALPTDLFFRTNIATYL 407
           N  G  AIVL    LF G A   E  IR+ L+E+   + I AI+ LP++LF+ T I T +
Sbjct: 341 NEEGTMAIVLPHGVLFRGAA---EGTIRQNLIEHPSGNRIYAIIGLPSNLFYGTGIPTII 397

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            +L  ++T +    +  I+A++ +   +N    +  +  +   +I+  Y  R++  K++ 
Sbjct: 398 MVLKKKRTGK---DILFIDASNDFKKEKN----QNKLTAENIDKIISTYRERKDVPKYAH 450

Query: 467 MLDYRTFGYRRIKVLRP----------------LRMSFILDKTGLARLEADIT 503
           +            +  P                +R     DK  +  LEA I 
Sbjct: 451 LASIEEIRQNDYNLNIPRYVDTTEEEEEIDIDEVRKLIAQDKKEIEELEAQIA 503


>gi|91216783|ref|ZP_01253747.1| type I restriction-modification system DNA methylase [Psychroflexus
           torquis ATCC 700755]
 gi|91184944|gb|EAS71323.1| type I restriction-modification system DNA methylase [Psychroflexus
           torquis ATCC 700755]
          Length = 546

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/590 (16%), Positives = 202/590 (34%), Gaps = 78/590 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS----AVREK 58
             T +  +    +WK A +L G      +   ILP   L+ +    E  +     A+ +K
Sbjct: 4   NQTKADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISEKYEVRKEELFQALNDK 63

Query: 59  YLAFGGSNIDLESFV------KVAGYSFYNTSEYSLSTLGSTNTRNN-----------LE 101
              +  ++ + +++V       ++  ++    E +   L     ++N           L+
Sbjct: 64  GSDYYTNDTEEQNYVLEDPDEYLSKNTYIIPKEATWQYLQDNAEQDNIKVLVDNAFDLLD 123

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYE 160
             +A F    K I       S +        +  +    +  +L     P   ++  +YE
Sbjct: 124 DTLAEFRPELKGILPRIFVKSQLT----PKQVAGLINLLAKPKLSEKENPGSDILGRVYE 179

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + I +F      GA  F TP  +V L   ++                 ++D  CG+GG  
Sbjct: 180 YYIGKFAIAEGSGAGQFFTPSSIVRLLVEMIEPYQG-----------KIFDNACGSGGMF 228

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             ++  +   G   K    +  +GQE    T  +C   + +R L  D        ++ G 
Sbjct: 229 IQSLKFLQAHGGDKKN---ISIYGQERYDGTLRLCKMNLALRDLSFD--------VRLGD 277

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +L +D F      + + NPPF       +D  E +     L           + + +++ 
Sbjct: 278 SLLQDKFPDLEADFIIVNPPFNVSQWHPEDLPEND---PRLFGTKEEFTTDGNANYMWMQ 334

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              N L    +  G AA+V+++  +       GE  +R+ ++++ +++ IV LP  LF  
Sbjct: 335 TFWNHL----SDTGTAAVVMANGAM--TSNTKGEKNVRQHMVDHGMVDCIVRLPDKLFLT 388

Query: 401 TNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           T I   ++ILS        K  +R  +V  I+ +      R E +K R+ ++   ++  D
Sbjct: 389 TGIPACIFILSKNRDGKDGKHRKRDNEVLFIDLSKHG---RMESRKLRVFDEADLQKATD 445

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            Y +  N K S            +      +     +               L  + +  
Sbjct: 446 TYHAWRNIKDS------------VTSSDSAKAELYREADTYIDQPGFSYSANLEEIAKQD 493

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           +       +           F  +          + K   +     ++ F
Sbjct: 494 YKLTPGIYVGTEAVEDDGIPFEHKMETLKAQLQTQFKTGNALQKQILDNF 543


>gi|294502095|ref|YP_003566160.1| Type I restriction modification enzyme, M subunit [Salinibacter
           ruber M8]
 gi|294342079|emb|CBH22744.1| Type I restriction modification enzyme, M subunit [Salinibacter
           ruber M8]
          Length = 510

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 120/531 (22%), Positives = 197/531 (37%), Gaps = 41/531 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   L + ++  A+ +      TD+   ILP    + +    +       E+     
Sbjct: 15  MSLTLDELESHLYGCADKIRNAVDKTDYKDFILPLVFYKTISDTYQDELEKWTEELGDED 74

Query: 64  -GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
              + DL  FV   GYS+    +        TN    +   + +  D      E   F +
Sbjct: 75  LARDPDLHDFVVPEGYSW---EKLRALNPQETNYDEFIGEALNAIEDANPEKLEGV-FRA 130

Query: 123 TIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              R +      L  + ++ S   L  + VP  ++   Y  L+R F  E  +   +F TP
Sbjct: 131 DYVREDALDNTRLGALVEHLSTYNLSANNVPPDMLGEAYMDLVRHFAEEEGKEGGEFFTP 190

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V L   L+    D             +DPT G+GG L +A +H  D       P  L
Sbjct: 191 PKIVRLMVCLVAPFGD---------GDEFHDPTVGSGGMLVEAAHHYRD--EQDGEPSHL 239

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL P+  A+    + I        R+ S    Q      +      F Y L+N P
Sbjct: 240 RLTGQELNPDIAAIAKMNLFIHGYNGQIEREDSLGAPQ----FTENGQLGCFDYVLANFP 295

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           F   W K       + ++   GRF     LP+   G   F+MH+AN+L    N  G+AAI
Sbjct: 296 FSADWPKS------DLQDDAYGRFDWHEKLPRADRGDYAFIMHMANQL----NATGQAAI 345

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+    LF       E   R  +LE DL+EA++ LP +LF   +I + + +L+  K EER
Sbjct: 346 VIPHGVLFR----KYEGRYREPMLEGDLVEAVIGLPENLFQNNSIPSAILVLNRDKPEER 401

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
            G+V  ++A D   +   E   +  + +     I+  +       + SR +         
Sbjct: 402 EGEVLFVHAAD--EAFYEELSNQNELTEGGLDHIIRNFNDWITEERVSRAVPIEEIREND 459

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             +   L +     +  +   E     R L          + + M    Y 
Sbjct: 460 YNLNIALFVDTTEPEEPIDVAEELTKLRHLQEERDEIESQLNEYMKALDYE 510


>gi|83815070|ref|YP_445227.1| putative type i restriction enzyme hindviip m protein [Salinibacter
           ruber DSM 13855]
 gi|83756464|gb|ABC44577.1| putative type i restriction enzyme hindviip m protein [Salinibacter
           ruber DSM 13855]
          Length = 522

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/516 (21%), Positives = 183/516 (35%), Gaps = 68/516 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            + + +W+ A DL G     ++   +LP   LR L    E  R  + EK      S    
Sbjct: 17  EIEDELWEAAVDLRGTIAPANYKNYVLPLLFLRYLSLRYEERREELEEKAED-PDSYYVE 75

Query: 70  ESFVKVAGY----SFYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKAIFEDF 118
           E   +V  Y    +F    E     L      +++          +    D+ + +    
Sbjct: 76  EDLREVDEYRQEGAFLIPEEARWDYLVEHAQDDDIKVKVDRAMELLQQRYDDLEGVLPPM 135

Query: 119 DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
              S + +   A L       FS  I          V+  +YE+ I  F         +F
Sbjct: 136 YAGSNLTQENLANL----INLFSRDIFTGQGKQQADVLGRVYEYFITNFADTEGSKGGEF 191

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR VV    A+L           P     ++DP CG+GG    A     D        
Sbjct: 192 FTPRSVVQALVAML----------EPEDGSKIFDPACGSGGMFVQAAEFTDDK------- 234

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L  +GQE   +   +C   +L+  L+ D           G +L  D   G +  Y ++
Sbjct: 235 ESLSFYGQESVDQNLRLCKMNLLMHDLQGDLES--------GDSLLNDKHEGLKADYVIA 286

Query: 298 NPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPF  + W  D+   +         R  P     S+ + +++MH  + L      GG A
Sbjct: 287 NPPFNIRSWGADEIPGDDPRLQVGDRRLQPTD---SNANYMWMMHFLHHL----EDGGTA 339

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-- 414
             V+++  +        E  +R+ L++   ++ IV LP  LFF T I   LW LS  +  
Sbjct: 340 GYVMANGSMTTSLTN--EEPVRKALVDERFVDCIVQLPDKLFFGTGIPACLWFLSRNRDG 397

Query: 415 ---TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------ENGK 463
                ER  ++  ++  D+        + +R++ DD+  ++   Y +         E   
Sbjct: 398 SNGERERSDEILFLDGRDMGEL---PERAKRVLTDDEIGRLETAYRNFRMPDEKVEEEPG 454

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           FS +           K+   L + F  D       E
Sbjct: 455 FSGVASLEEVRSNDYKLTPGLYVGFEDDDGDRVPFE 490


>gi|325680236|ref|ZP_08159798.1| type I restriction-modification system, M subunit [Ruminococcus
           albus 8]
 gi|324108053|gb|EGC02307.1| type I restriction-modification system, M subunit [Ruminococcus
           albus 8]
          Length = 875

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 114/653 (17%), Positives = 227/653 (34%), Gaps = 88/653 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------------LEPTR 52
           +   LAN IW++A  +    +  ++   IL F   + +                 L   R
Sbjct: 2   NKQQLANKIWESANKMRSKIEANEYKDYILGFIFYKYISDVEITHLLGLGYTTDTLYEVR 61

Query: 53  SAV----------REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLE 101
             V           +           +++     GY    T  + +   LGS    +N+ 
Sbjct: 62  EPVYPDPDNASAPFDDEETVKDLEEQIDNIKTDIGYFIPYTDLFSTWLELGSDFDVSNVR 121

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDT 149
             + +F++       +  F      L            E+   +  +      I      
Sbjct: 122 DALNAFNNRRIGKTHEKVFKGIFDTLRTGLSKLGGTAGEQTKAIRDLLNLIKDIPTDNKE 181

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D  +  IYE+LI  F +   + A +F TP +V  L + ++        +        +
Sbjct: 182 DYDA-LGFIYEYLIENFAANAGKKAGEFYTPHEVSLLMSEIVAYHLRDRKEI------KI 234

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L +     A    +      +  + QEL+  T+ +    +++R ++++  
Sbjct: 235 YDPTSGSGSLLINIGKSAAR---YMGTGNNIAYYAQELKQNTYNLTRMNLVMRGIKANMI 291

Query: 270 RDLSKNIQQGSTLS----------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                +  +               +  +        +SNPP+ + W+ D    +  +   
Sbjct: 292 ETRCGDTLEDDWPYFSEDDKGVKIEGTYDPLYVDAVVSNPPYSQNWDPDGKENDDRYS-- 349

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                G G+   S     FL+H    ++      G   I+L    LF    G  E EIRR
Sbjct: 350 -----GYGVAPKSKADYAFLLHDLYHIK----SDGIMTIILPHGVLFR---GGEEGEIRR 397

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+E + I+AI+ LP ++FF T I T + +L   +  +    V +I+A+  +        
Sbjct: 398 NLIERNRIDAIIGLPANIFFGTGIPTIIMVLKKNRIND---DVLIIDASKGFEK----AG 450

Query: 440 KRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGL- 495
           K   +     R+I D  + R +  K+SR ++          + + R +  S   +   + 
Sbjct: 451 KSNKLRASDIRRITDTVIDRRDVPKYSRKVNREEIRANDYNLNIPRYVDSSEPAETWDIY 510

Query: 496 ARLEADITWRKLSPLHQ---SFWLDILKPMMQQIYPYGW--AESFVKESIKSNEAKTLKV 550
           A++   I   +L  L +   +F        + +   Y     +       +S++    + 
Sbjct: 511 AQMFGGIPNIELDALSEYWTAFPKLRRSLFLARSTEYSEVTTDDIKTTVCRSDDVSAFRE 570

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN-LTEYENVPYLESIQDY 602
           K   +F       +       + V   + E +   N     EN+  ++  + Y
Sbjct: 571 KYRTAFDDFSDYLYTELIEGWETVHTASEESVLSANIFKRLENISLIDPYEAY 623


>gi|295401867|ref|ZP_06811831.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976121|gb|EFG51735.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 515

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/559 (16%), Positives = 188/559 (33%), Gaps = 83/559 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
                +++ A  + G     D+   +LP   LR L    E  R  + +            
Sbjct: 8   DFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDPSSDWYTE 67

Query: 70  ESFVKV----------AGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAK 112
           +  ++           A   F    E S S +             +N    +   +   +
Sbjct: 68  DDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPELE 127

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            I       S +        +  + + FS      +T     ++   YE+ I  F +   
Sbjct: 128 GILPRIYQGSNLP----PENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEG 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V L  A+L                 ++DP CG+GG    +  +  +  
Sbjct: 184 NRGGEFFTPSSIVKLLVAMLEP-----------KSGIVFDPACGSGGMFIQSEEYAPNKH 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +       L  +GQE    T  +    +L+  + ++         + G +L  D F   +
Sbjct: 233 A-------LSFYGQENVVTTVRLGKMNVLLHGINAEI--------RLGDSLLNDQFPDLK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF +K        + + +         G    S+ + +++ H    L    N
Sbjct: 278 ADYVIANPPFNQKDWGADRLSKNDPRLI-------GPVTNSNANYMWMQHFLYHL----N 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS
Sbjct: 327 DTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLS 384

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG---- 462
             +        R+ ++  I+A  + T +    +K++ ++ ++  +I  +Y + +      
Sbjct: 385 KNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKALSKEEIDKIAAVYRAYKYEGAEG 441

Query: 463 -----KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
                 F ++           K+   + +   +        E      K++ L Q     
Sbjct: 442 YEDVVGFCKVATIDEVRANDYKLTPGIYVGTEVSDEDDIPFE-----EKMAELTQRLLEQ 496

Query: 518 ILKPMMQQIYPYGWAESFV 536
             +    Q       E  +
Sbjct: 497 FEESNRLQEKIKKDLEELL 515


>gi|161528114|ref|YP_001581940.1| type I restriction-modification system subunit M [Nitrosopumilus
           maritimus SCM1]
 gi|160339415|gb|ABX12502.1| type I restriction-modification system, M subunit [Nitrosopumilus
           maritimus SCM1]
          Length = 523

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/556 (21%), Positives = 204/556 (36%), Gaps = 71/556 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +++   +   L   ++  A+ L      ++  K +L    L+RL    E     + +   
Sbjct: 2   LSDQKLTFEQLEQRLFDAADILRKHLDASENRKPVLTLLFLKRLNDIFEENVEKLMK--- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDF 118
                    E+  K     FY   +   + L   S +  + +        D  +      
Sbjct: 59  --DEGLSKKEAENKRRHPIFYLPEDTRWNKLQNVSEDVGSKIIEICKKIEDANQKKLGGT 116

Query: 119 DFSSTIARLEKAGLLY--KICKNFSGIEL------HPDTVPDRVMSNIYEHLIRRFGSEV 170
              S     EK       K+  +FS  +       + D   + +  + YE L+  F SE 
Sbjct: 117 MMVSEFNIKEKYPDTALVKLIDHFSTTDEGYFRLRNSDLENEDIFGDAYEQLLEMFASET 176

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TPR VV L   L+           P     + DPTCG+GG L  +  +V   
Sbjct: 177 KKKGGQFYTPRKVVQLLVELM----------EPKYDYRINDPTCGSGGMLIHSRQYVEKS 226

Query: 231 GSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               K            L  HGQ+   +T  +C   M+I  +        S +I+ G  L
Sbjct: 227 LKKEKKSSKEIEELLKNLTLHGQDSNIDTVNMCKMNMVIHGV-------PSFSIEWGDVL 279

Query: 283 SKDLFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSML 337
               F        +   L+N PF + WE          +N   GRF  G+          
Sbjct: 280 ESPKFVKDGKLIEYDRVLANFPFSENWEASGK------ENDGYGRFKYGIAPAKDKADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL--------LENDLIEA 389
           F++H+ + L    N  G+AAIV S   LF G +   E +IR  +        L+ D+IEA
Sbjct: 334 FILHMLSSL----NENGKAAIVCSQGVLFRGSS---EQKIRENMIAGNKDENLQGDMIEA 386

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ALP  LF+ T I   + IL+  K +ER+ K+  I A + +     EGK R  + D   
Sbjct: 387 IIALPVALFYGTGIPACVLILNKNKPKERKNKILFIYAANEF----QEGKVRNKLRDKDI 442

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
             I+  + + ++  K+  + +          +  P  +    ++  +         +KL 
Sbjct: 443 EHIVKAFKAFKDEDKYCHVAELDEIRENEFNLNVPRYVDISEEEKIIDIQATIDELKKLD 502

Query: 509 PLHQSFWLDILKPMMQ 524
                  L + + + +
Sbjct: 503 KERDELELKVKQDLKE 518


>gi|312110992|ref|YP_003989308.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y4.1MC1]
 gi|311216093|gb|ADP74697.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y4.1MC1]
          Length = 515

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/553 (17%), Positives = 194/553 (35%), Gaps = 72/553 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
                +++ A  + G     D+   +LP   LR L    E  R  + +            
Sbjct: 8   DFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDPSSDWYTE 67

Query: 70  ESFVKV----------AGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAK 112
           +  ++           A   F    E S S +             +N    +   +   +
Sbjct: 68  DDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPELE 127

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            I       S +        +  + + FS      +T     ++   YE+ I  F +   
Sbjct: 128 GILPRIYQGSNLP----PENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEG 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V L  A+L                 ++DP CG+GG    +  +  +  
Sbjct: 184 NRGGEFFTPSSIVKLLVAMLEP-----------KSGIVFDPACGSGGMFIQSEEYAPNKH 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +       L  +GQE    T  +    +L+  + ++         + G +L  D F   +
Sbjct: 233 A-------LSFYGQENVVTTVRLGKMNVLLHGINAEI--------RLGDSLLNDQFPDLK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF +K        + + +         G    S+ + +++ H    L    N
Sbjct: 278 ADYVIANPPFNQKDWGADRLSKNDPRLI-------GPVTNSNANYMWMQHFLYHL----N 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS
Sbjct: 327 DTGTAGFVMANGAMTTNV--KEEKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLS 384

Query: 412 NRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
             +        R+ ++  I+A  + T +    +K++ ++ ++  QI  +Y + +     +
Sbjct: 385 KNRDGKNGYRARKNEILFIDARKMGTLV---SRKQKALSKEEIDQIAAVYRAYKYDGAEK 441

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             D    G+ ++  +  +R +      G+  +  +++     P  +       + + Q  
Sbjct: 442 YEDI--VGFCKVAKIEEVRANDYKLTPGIY-VGTEVSNEDDVPFEEKMAELTQRLLEQFE 498

Query: 527 YPYGWAESFVKES 539
                 E   K+ 
Sbjct: 499 ESNRLQEKIRKDL 511


>gi|86158751|ref|YP_465536.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775262|gb|ABC82099.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 538

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/448 (24%), Positives = 178/448 (39%), Gaps = 46/448 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           TE   +AA+L   +W  A++L  +   K  ++ + IL    L+  +      R+ + +  
Sbjct: 7   TEKDVAAATLEKRLWAAADELRANSGLKSAEYSQPILGLIFLKFADARFAVRRAELAKVT 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               GS +D  +     G  F   SE   S L            +    D+A    E  +
Sbjct: 67  TGRRGSRVDDPASYHAEGVLFLA-SEARFSELLEFPEGGRDGKTLGQAVDDAMRAVERDN 125

Query: 120 -----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                      +  KA  L ++ K FS I   P  +       IYE+ +  F     +G 
Sbjct: 126 EQLAGVLPKTYQQFKARPLKELLKAFSAI---PVDLEGDSFGKIYEYFLGEFAMAEGQGG 182

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ +V L   +L                 + DP CG+GG    +   V    S H
Sbjct: 183 GEFYTPQPIVRLMVEILEPFKG-----------RVLDPACGSGGMFVQSARFV----SEH 227

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K    L  HG E    T  +C   + +  LE D R     N               RF +
Sbjct: 228 KKNGGLAIHGVEKVDTTGQLCRMNLAVHGLEGDIRHGGEINSYYDD----PHNAVGRFDF 283

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPN 351
            L+NPPF        D V+K+     +G   RF  G+P + + + L++    + L    N
Sbjct: 284 VLANPPFNV------DKVDKDRIRDAVGPGRRFPFGVPNVDNANYLWIQLFYSAL----N 333

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRA  V++SS      A + E E+RR L+E+  ++ I+++ + +F+   +   LW L 
Sbjct: 334 ESGRAGFVMASSAP---DARASEQELRRKLIESRAVDVIISVGSKMFYTVALPCTLWFLD 390

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGK 439
             K ++RR KV  I+A  ++  +    +
Sbjct: 391 RGKPKDRRDKVLFIDAQHIYRQVDRAHR 418


>gi|15678962|ref|NP_276079.1| type I restriction modification enzyme, subunit M
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622040|gb|AAB85440.1| type I restriction modification enzyme, subunit M
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 616

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/518 (21%), Positives = 206/518 (39%), Gaps = 53/518 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGSN 66
            A +   +   A+ +       D+   IL    ++++        + A  +    +G S 
Sbjct: 118 RADIERILKGAADLIRTRV---DYK-FILVLLFMKQMSDKWMMEYQKAYEDAIKEYGLSE 173

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY------IASFSDNAKAIFEDFDF 120
            +     + + Y   +  E  L      +  N    +      +A  +   K + + FDF
Sbjct: 174 EEARLEARNSAYHDLDIKEEYLWDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAFDF 233

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  E   +L ++ + FS  +L    V   ++ + YE ++R F    ++   +  TP
Sbjct: 234 VEFTQSQENREILRQLVELFSEKKLT--NVDPDILGDAYEWILRYFAPTKAKE-GEVYTP 290

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   +L           P    ++YDP   + G L  +  +V +     +    L
Sbjct: 291 REVIRLLVEIL----------DPKPGESVYDPASASNGMLIISHKYVKETYGEAE---RL 337

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE+  +T A+    M I  ++         +I  G TL    F       RF   +
Sbjct: 338 FLYGQEVNRKTMALGSMNMYIHDIKD-------HHIAHGDTLLYPKFKESDGIMRFDVVI 390

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+ +    +    + ++      RF  G          ++ H+    +      GR 
Sbjct: 391 ANPPWNQDGYGEDTLKKGDYWRE---RFRYGFVNKQSADWAWIQHMIASAK----DDGRI 443

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+ +  LF    G  E  IR  +LE+DLIEA++ LP  LF+ T     + IL+  K E
Sbjct: 444 GVVIDNGCLFR---GGREKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDKDE 500

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475
           ERRGKV  INA + +     E +K  I++D    +IL+ Y   + +  FSR++D      
Sbjct: 501 ERRGKVLFINAGEEYEK-HPEVRKLNILSDGNIERILEAYREFQGDDGFSRVVDLDEIRE 559

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
               +  PL   +   +  L  ++    W +LS + + 
Sbjct: 560 NDYNLNVPL---YAFPEEELEDIDVAGEWMRLSEIEEE 594


>gi|48477150|ref|YP_022856.1| type I restriction-modification system methylation subunit
           [Picrophilus torridus DSM 9790]
 gi|48429798|gb|AAT42663.1| type I restriction-modification system methylation subunit
           [Picrophilus torridus DSM 9790]
          Length = 576

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 204/517 (39%), Gaps = 51/517 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    + + L + + K A+ +       D+   IL    L+R+    E   +    + + 
Sbjct: 82  TNNKITRSDLESMLKKAADLIRTRV---DYK-YILILLFLKRISDKWEEEYNKALNELVD 137

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIF 115
            G +  + +   K   Y  +N  E +L      +              IA  + + K + 
Sbjct: 138 NGLNESEAKEEAKDEIYHEFNLPEDALWNNIRKDVNTLPEKLARALKTIAEMNPDLKNVI 197

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           ++ DF +     E + +L ++ + FS  EL+   V   ++ + YE ++R F  + ++   
Sbjct: 198 DNIDFMTFTTNSENSQILRQLVELFSEQELN--NVSPDILGDAYEWILRYFLPQKAKE-G 254

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   LL           P     +YDP CGT G L  A  +V D      
Sbjct: 255 EIYTPREVIKLLMNLL----------DPKPGDYIYDPACGTAGMLITAYYYVKDKYGKDY 304

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHY 294
               L  +GQE     +AV    + I  ++         N+  G TL       + +F  
Sbjct: 305 ANK-LFLYGQEANTTIYAVSKMNLYIHGIDDT-------NLSSGDTLLHPKNIDENKFDI 356

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+ +    +      E+    L R+  G    S     ++ H+            
Sbjct: 357 VVANPPWNQDGYDENVLKTGEY----LNRYKYGFTNSSSADWAWIQHMLY------TSKS 406

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +  I+L +  LF       E  IR  +++ND +E+++ LP  +F+ T   + + IL+  K
Sbjct: 407 KVGIILDTGSLFRS---GKELAIRSKIIDNDFVESVILLPEKIFYNTGSPSVIIILNKNK 463

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
             + R K+  I+A+  +     E +K   ++DD   +I + Y   +N   F+ ++D    
Sbjct: 464 --KIRNKILFIDASKEFIK-HPEIRKLNTLSDDNINKITEAYKQFKNIDNFASVVDLNKI 520

Query: 474 GYRRIKVLRPLRMSFIL--DKTGLARLEADITWRKLS 508
                 +  PL +      DK  +  + ++I    L 
Sbjct: 521 KENNYDLNIPLYIDNKENNDKIDIKNVLSEIKDLDLK 557


>gi|258615581|ref|ZP_05713351.1| hypothetical protein EfaeD_07707 [Enterococcus faecium DO]
          Length = 411

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/425 (21%), Positives = 186/425 (43%), Gaps = 45/425 (10%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +AS  +    +F+D D  S     +   +   + ++ K  + +E+        V+ + YE
Sbjct: 3   LASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYE 60

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  +
Sbjct: 61  FLISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLM 114

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G 
Sbjct: 115 LNVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGD 162

Query: 281 TLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL+KD  T +   F   + NPP+   W  D   ++    +    R+G  L   S     F
Sbjct: 163 TLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAF 217

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LF
Sbjct: 218 LLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLF 270

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  
Sbjct: 271 FGTSIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAE 323

Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           R++  K++ + ++         +  P  +    ++  +  +      +K+    Q    +
Sbjct: 324 RKDVEKYAHLANFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKE 383

Query: 518 ILKPM 522
           +L+ +
Sbjct: 384 LLEAI 388


>gi|325283701|ref|YP_004256242.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus
           proteolyticus MRP]
 gi|324315510|gb|ADY26625.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus
           proteolyticus MRP]
          Length = 522

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 187/464 (40%), Gaps = 55/464 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT  T   ++L   +W  A+ +  +   K  ++   +L    L   +   +     +   
Sbjct: 1   MTNST-DLSALEKRLWDAADQMRANSKLKSHEYSTPVLGLVFLSYADYRFQNKAEEI--- 56

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                G + D + F  +A    Y   +   S L       N+ + I    +  +A  ++ 
Sbjct: 57  -----GLDADPDDF--MAEGVLYVPEKARYSELLKLPEGANIGAAINEAMNAIEA--QNP 107

Query: 119 DFSSTIARLEK---AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           D +  + ++       LL  + K+F+  +L    +       ++E+ +  F         
Sbjct: 108 DLTGALPKMYNRLDNSLLAGMLKSFTFSDLT-AGLQGDAFGRVFEYFLGEFARNEGSKGG 166

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ +V L   ++                 +YDP CG+GG    +   V        
Sbjct: 167 EFYTPQSLVKLMVEIMEPF-----------HGKIYDPACGSGGMFVQSARFVEQH--QRS 213

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHY 294
               L  +GQE   ET  +    + I  L  D         +QG+T  +DL  +  +F +
Sbjct: 214 AADDLSVYGQEKTSETARLARMNLAIHGLSGDI--------KQGNTFYEDLHASPGKFDF 265

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K       V+KE  + +  R   G P   + + L+L ++A+ L    N GG
Sbjct: 266 AMANPPFNVK------GVDKERISNDQKRLPYGTPSTDNANYLWLQYIASSL----NSGG 315

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-R 413
           RA +V+++S      A   E  IR+ ++E+ +++ +VA  ++LF+   +   LW +   +
Sbjct: 316 RAGVVMANSA---SDARGSEQLIRQRMIEDGVVDVMVATSSNLFYTVTLPATLWFMDKGK 372

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           K   R   V  I+A + +  +    ++ R    +    I+++Y 
Sbjct: 373 KGTPREDTVLFIDARNTYQQVTRAIRELRDDQVELLANIVNLYR 416


>gi|257076849|ref|ZP_05571210.1| type I restriction-modification system methylation subunit
           [Ferroplasma acidarmanus fer1]
          Length = 507

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 182/486 (37%), Gaps = 49/486 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L   +   A+ +       D+   IL    ++RL     E    A+ E     G  
Sbjct: 10  TKNDLVKLVDNAADLIRTSV---DYK-YILVLLFIKRLSDRWKEEIEDAMSEIMEETGID 65

Query: 66  NIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFD 119
             +         +  +   E   ++           N+   I      +     +    D
Sbjct: 66  ESEAAKRAVSNEFHSFMVPENVLWNNIRKDRDKLTENMSRAINEIAKQNKELDGVVNRID 125

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F       E   LL ++   F         +    M + YEH++ RF  E ++   +  T
Sbjct: 126 FIDFTKTRENRILLEQLFALFDKYNFSNKCIEGDAMGDAYEHILMRFAPEKAKE-GEVYT 184

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+VV L   +L           P    ++YDP CG+GG L +A  HV       K   +
Sbjct: 185 PREVVRLMVDIL----------DPQPGMSVYDPACGSGGMLIEAYEHVKSRMGVDKANRV 234

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
              +G+E  P T+A+     ++  +          +++ G +L    F      + F + 
Sbjct: 235 -GLYGEERSPTTYALAKMNTILHDIS-------ESHLEVGDSLLYPKFKTASGLRHFDFV 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPP+ +K   +    + E K+    R+  G      G   ++ H+            +
Sbjct: 287 LANPPWSQKGYGEDTLKQAEFKD----RYAYGFVPQRYGDWAWIEHMLY------TSKSK 336

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+++    LF   +   E  IR+ +++  L++++  LP  +F+ T  A  + I +  K 
Sbjct: 337 VAVIMDQGALFRSNS---EKIIRQKIVDEKLLDSVTLLPEKIFYNTGAAGAILIFNKEKQ 393

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFG 474
           EE R KV  I+A+  +     + +K  II +D   +I+  Y   E    FS+++      
Sbjct: 394 EEYRDKVLFIDASREYGK-HPDMRKLNIITNDNIDRIVSAYKKFESIDGFSKVVSVDEIK 452

Query: 475 YRRIKV 480
            +   +
Sbjct: 453 EKDYNL 458


>gi|150391750|ref|YP_001321799.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149951612|gb|ABR50140.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 120/681 (17%), Positives = 249/681 (36%), Gaps = 85/681 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W+    L G  + + +   +L     + +    +  R              
Sbjct: 4   KKSELYSLLWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGQR-------------- 49

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTI 124
                F    G SF    E  ++  G ++    ++  I  F +  +      D  F++  
Sbjct: 50  --FAEFTVNEGASF----EDLIAAKGKSDVGERVDKIIQKFLEENRLQGSLPDVSFNNPD 103

Query: 125 ARLEKAGLLYKICKNFS-----GIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                  L+ K+    +      I+   +    D ++ + YE+ + +F  E  +    F 
Sbjct: 104 ELGSGKELVDKVSGLIAIFQNPAIDFKSNRASGDDIIGDAYEYFMMKFAQESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   L+   D    K+  G   TL+DP  G+G  L  A +   +  +      
Sbjct: 164 TPSEVSRIIARLIGIGD---IKQETGKKWTLHDPAAGSGSLLIRAAD---EAPTDEDGNS 217

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I+  +GQE  P+T  +     ++           S N         D    ++F + + N
Sbjct: 218 IVSIYGQEKYPDTAGLAKMNFILH--NKGTGEIKSANTLANPAYKDDFGGLRKFDFIVMN 275

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF  K   D      +    +  RF G G+P   +G   + +H+   L+   +  G+A 
Sbjct: 276 PPFSDKDWTDG----IKPSEDKFKRFDGYGIPPEKNGDYAWFLHV---LKALDSQRGKAG 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L    L      + E  IR+ +L+   I+ IV LP +LF+ T I   + I+     ++
Sbjct: 329 IILPHGVLSR---PNAEETIRKAVLDKRYIKGIVGLPANLFYGTGIPACIIIIDKEDADK 385

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF--- 473
           R G + +INA+  +    N+ +    + +    +I+  ++++E    +S+ + Y+     
Sbjct: 386 REG-IFMINASRGFKKDGNKNR----LREQDIEKIVQTFINKEEIEGYSKFVTYKEILEQ 440

Query: 474 GYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
               + V R ++         +A  L+  I    ++ + + +   I   + ++I+     
Sbjct: 441 NEGNLNVPRYIQKIDDTLPQNIASHLKGGIPEIDINSIEKLW--RISPALKKEIFTCVDE 498

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFG-----RKDPRADPVTDVNGEWIPDTNL 587
           +  V   + S       +   ++      N  G      +D   D + ++N    P   +
Sbjct: 499 KHNVYNLVMSPNEIETVISEDENIKNEIENECGELFGTWRDAVKDSLLNINASTNPKELI 558

Query: 588 T--------EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK--DKEIGRVGYEINF 637
                    ++E+   L++   Y        + + + +K+  D           G EI  
Sbjct: 559 RNMGIEILSDFESAQLLDNYHVY------DFLLNYWNEKMQDDVYVIKASGYEAGREIE- 611

Query: 638 NRFFYQYQPSRKLQDIDAELK 658
               Y Y   +   +   E+K
Sbjct: 612 ----YVYAQKKAKDENGEEIK 628


>gi|332288722|ref|YP_004419574.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330431618|gb|AEC16677.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 483

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 174/497 (35%), Gaps = 70/497 (14%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS------------- 93
            L+P   +  E          + +++   A   F+  ++     L +             
Sbjct: 9   YLDPNDYSAEEYQAQLEEEMEERDNY--TAENIFWVPAQARWENLKNVVILRKGSELPWG 66

Query: 94  ------TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                  N  ++  + I   +   K I +         +     +      +F+    + 
Sbjct: 67  GTFRGVANLIDDAFTAIEKENPKLKGIIQRISGFDVEEQTLIGLVNLFSDTHFNQPTYNG 126

Query: 148 DTVP---DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           + +      ++ ++YE+ +  F     +    + TP+ +V L   +L             
Sbjct: 127 EPISLAAKDILGHVYEYFLGEFALAEGKKGGQYFTPKSIVTLIVEMLQPYQG-------- 178

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR +
Sbjct: 179 ---RIYDPAMGSGGFFVQTEKFIE---AHQGNINQVSIYGQESNPTTWKLAAMNMAIRGI 232

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E D             +  +     K+  + ++NPPF  K   ++   +         R+
Sbjct: 233 EFD------FGKSNADSFKQPQHIDKKMDFVMANPPFNMKDWWNESLQDD-------PRW 279

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+P   + +  +L H+   L    +  GR  ++L++  +       GE EIR+ LLE 
Sbjct: 280 QYGIPPEGNANFAWLQHMLYHL----SPNGRMGLLLANGSM--SSQTGGEGEIRQRLLEA 333

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K   R  +V  I+A ++      + +  R  
Sbjct: 334 DLVECMVALPGQLFTNTQIPACIWFLNKNKP--RAKEVLFIDAREIGYM---KDRVLRDF 388

Query: 445 NDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             +   +I D Y + +          F               VL P R     ++     
Sbjct: 389 TTEDIAKIADTYHAWQQNNGYENQAGFCYAASLDEIANNDF-VLTPGRYVGTAEQQDDGI 447

Query: 498 LEADITWRKLSPLHQSF 514
             A+   +  + L+Q F
Sbjct: 448 PFAEKMQKLTALLNQQF 464


>gi|182679587|ref|YP_001833733.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635470|gb|ACB96244.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 814

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 105/520 (20%), Positives = 199/520 (38%), Gaps = 65/520 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + + + +W + + L G    + +   +L    ++ +        + + E  +  GGS 
Sbjct: 4   KKSEIYSSLWASCDALRGGMDASLYKDYVLVLLFVKYVSDKYAGDPNGLIE--VPKGGSF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            D+ +                    G+ +    +   IA  ++  + K + +  DF+   
Sbjct: 62  ADMVALK------------------GNKDIGEQINMIIAKLAEANDLKGVIDVADFNDPD 103

Query: 125 A---RLEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 E    L  +   F+  EL      T  D ++ + YE+L+R F +E  +    F 
Sbjct: 104 KLGSGKEMVDRLSSLVGIFNRPELDFRKNRTEGDDILGDAYEYLMRHFATESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +    +         +      T+YDPTCG+G  L  A         H + P 
Sbjct: 164 TPAEVSRIMAKAIGMGSARSAAQ------TIYDPTCGSGSLLLKA---------HDEAPF 208

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L  +GQE +  T A+    M++   +         N         +  T K F + ++N
Sbjct: 209 DLTIYGQEKDVATRALAKMNMVLH--DCPTAEIWRDNTLSAPHFVNNDGTLKTFDFVVAN 266

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K          +       RF  G+P   +G   +L+H+   L+      G+ AI
Sbjct: 267 PPFSDKAWGTGL----DPAEDRFKRFEDGVPPAKNGDFAYLLHVVASLK----STGKGAI 318

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++    LF G A   E+ IR  ++   +I+ I+ LP +LF+ T I   + +L       R
Sbjct: 319 IMPHGVLFRGNA---EAGIREKIIRKGIIKGIIGLPANLFYGTGIPACIVVLDKENAHAR 375

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR- 476
            G + +I+A+  +    N+ +    +      +I+D +  +    ++SRM+         
Sbjct: 376 TG-IFMIDASKGFVKDGNKNR----LRAQDIHKIVDTFTKQLIIDRYSRMVPLAEIEKND 430

Query: 477 -RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSF 514
             + + R +  S   D   + A L+  I  R +  L   +
Sbjct: 431 FNLNIPRYIDSSEPDDLQDIEAHLKGGIPLRDIDALANYW 470


>gi|47459119|ref|YP_015981.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
 gi|47458448|gb|AAT27770.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
          Length = 526

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 108/527 (20%), Positives = 196/527 (37%), Gaps = 74/527 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDF---KHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
                  +L   IWKN  +L          DF + +      R +   L    +    K 
Sbjct: 4   NNEIEKNTLNKTIWKNVSELKKSIWNADEWDFKEYVFGIIFYRYISENLADYINQDEWKA 63

Query: 60  LAFGG-------------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                                +++  +K  G+    +  +      S N ++   +    
Sbjct: 64  NKNTNFRYENIEDNYILSRKEEIKELIKDKGFFIKPSHLFINILKKSLNDKDLNVTLGEV 123

Query: 107 FSD------------NAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTV 150
           F +            + K +F D + +++       E+   L K+ K    +EL +    
Sbjct: 124 FEEIESSTNGTTSEKSFKGLFADINLNNSKLGSTVNERNENLAKLIKVIGEMELGNFQDN 183

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 ++YE+L+  + S   +   ++ TP++V  L   + L     + K        +Y
Sbjct: 184 SIESFGDVYEYLMSMYASNAGKSGGEYYTPQEVSELLAKITLVGKKEINK--------VY 235

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L +    +      +         GQE    T+ +C   M +  +  +   
Sbjct: 236 DPACGSGSLLLNFAKILGKEKVRNG------FFGQETNQTTYNLCRINMFLHDINYNK-- 287

Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               NI QG TL+  L    + F   +SNPP+  KW    + +          RF P   
Sbjct: 288 ---FNISQGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPLLIND-----PRFSPAGV 339

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F+MH  + L +     G AAIV     ++ G A   E +IR++L++N+ I
Sbjct: 340 LAPESKADLAFIMHSLSYLAV----NGTAAIVTFPGVMYRGGA---EQKIRKYLVDNNFI 392

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +AI+ LP +LFF T+IAT + +L   K       +  I+A+  +  I N  K    ++ +
Sbjct: 393 DAIIQLPENLFFGTSIATCILVLKKNKLV---NDILFIDASKEFQKITNSNK----LSKE 445

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
              +IL+ Y  R +   F+  +           +     +    +K 
Sbjct: 446 NISKILNTYEKRIDLEHFTNKVSNNKISEENYNLSVSTYIGQKSEKE 492


>gi|282917067|ref|ZP_06324825.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|282319554|gb|EFB49906.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
          Length = 460

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 108/482 (22%), Positives = 199/482 (41%), Gaps = 53/482 (10%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E  R  ++ + +   G  I+ +            T ++ +  L +T  R    S +   S
Sbjct: 15  EEYREDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFDIEHL-ATAIRKVETSTLGEES 72

Query: 109 DN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE LI 
Sbjct: 73  ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 132

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L    
Sbjct: 133 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG 184

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     K   +    GQE    T+ +    ML+  +  +     + +I+   TL  
Sbjct: 185 ----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLEN 229

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H+ +
Sbjct: 230 PAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVH 284

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
            L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I
Sbjct: 285 YL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSI 337

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++ Y  +E   
Sbjct: 338 PTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIINTYKRKETID 391

Query: 463 KFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDI 518
           K+S     +        + + R +          L +++ D+    ++++ + Q     +
Sbjct: 392 KYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYL 451

Query: 519 LK 520
            +
Sbjct: 452 KE 453


>gi|282915751|ref|ZP_06323521.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|282320380|gb|EFB50720.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
          Length = 460

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/482 (21%), Positives = 194/482 (40%), Gaps = 49/482 (10%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E  R  ++ + +   G  I+ +            T ++ +  L +T  R    S +   S
Sbjct: 15  EEYREDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFDIEHL-ATAIRKVETSTLGEES 72

Query: 109 DN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE LI 
Sbjct: 73  ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 132

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L    
Sbjct: 133 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG 184

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                         +    GQE    T+ +    ML+  +  +     + +I+   TL  
Sbjct: 185 KETK----------VYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLEN 229

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H+ +
Sbjct: 230 PAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVH 284

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
            L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I
Sbjct: 285 YL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSI 337

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   
Sbjct: 338 PTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETID 391

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+S     +        +  P  +    ++  +   +     + +         +I + +
Sbjct: 392 KYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINEYL 451

Query: 523 MQ 524
            +
Sbjct: 452 KE 453


>gi|304315082|ref|YP_003850229.1| type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588541|gb|ADL58916.1| predicted type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
          Length = 590

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/518 (21%), Positives = 206/518 (39%), Gaps = 53/518 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGSN 66
            A +   +   A+ +       D+   IL    ++++        + A  +    +G S 
Sbjct: 92  RADIERILKGAADLIRTRV---DYK-FILVLLFMKQMSDKWMMEYQKAYEDAIKEYGLSE 147

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY------IASFSDNAKAIFEDFDF 120
            +     + + Y   +  E  L      +  N    +      +A  +   K + + FDF
Sbjct: 148 EEARLEARNSAYHDLDIKEDYLWDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAFDF 207

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  E   +L ++ + FS  +L    V   ++ + YE ++R F    ++   +  TP
Sbjct: 208 VEFTQSQENREILRQLVELFSEKKLT--NVDPDILGDAYEWILRYFAPTKAKE-GEVYTP 264

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   +L           P    ++YDP   + G L  +  +V +     +    L
Sbjct: 265 REVIRLLVEIL----------DPKPGESVYDPASASNGMLIISHKYVKETYGEAE---RL 311

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE+  +T A+    M I  ++         +I  G TL    F       RF   +
Sbjct: 312 FLYGQEVNRKTMALGSMNMYIHDIKD-------HHIAHGDTLLYPKFKESDGIMRFDVVI 364

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+ +    +    + ++      RF  G          ++ H+    +      GR 
Sbjct: 365 ANPPWNQDGYGEDTLKKGDYWRE---RFRYGFVNKQSADWAWIQHMIASAK----DDGRI 417

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+ +  LF    G  E  IR  +LE+DLIEA++ LP  LF+ T     + IL+  K E
Sbjct: 418 GVVIDNGCLFR---GGREKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDKDE 474

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
           ERRGKV  INA + +     E +K  I++D    +IL+ Y   ++   FSR++D      
Sbjct: 475 ERRGKVLFINAGEEYEK-HPEVRKLNILSDGNIERILEAYREFQDDDGFSRVVDLDEIRE 533

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
               +  PL   +   +  L  ++    W +LS + + 
Sbjct: 534 NDYNLNVPL---YAFPEEELEDIDVAGEWMRLSEIEEE 568


>gi|321310228|ref|YP_004192557.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
 gi|319802072|emb|CBY92718.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
          Length = 513

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/527 (20%), Positives = 198/527 (37%), Gaps = 70/527 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVREKYLA 61
           +  +AN IW   + L  +   T+    ILP    R +   +         +         
Sbjct: 3   SKDVANKIWSACDKLRSNMDGTEMKNYILPVVFYRFISEKISQYVNDNFGKGGSDYSLWE 62

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSL-----------STLGSTNTRNNLESYIASFS-- 108
              +     S V+  G S      +               L      N   +Y+   S  
Sbjct: 63  VDKAKKINSSLVQGLGCSLLPIHLFQNLKKDIDGNPEEGVLDLGKKLNEAFTYLEESSLH 122

Query: 109 ----DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
                N + +  + +++         ++  ++  +    + +E   D   +  + ++YE 
Sbjct: 123 TSSASNFRNLLVNTNWNDVKLGGTLSKRNEIIADLVNIVNEMEFGSDYEDN--LGDVYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI R+ S   +   +F TP  V  L + +++   + + K        +YDPTCG+G  L 
Sbjct: 181 LISRYASNGGKKGGEFYTPARVSELLSKIVIFEKEKVSK--------VYDPTCGSGSLLL 232

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             M               +  +GQE    T+ +C   M I  +  +       +I  G T
Sbjct: 233 KFMKMYGR-------DKGVKVYGQENNVTTYNLCRMNMFIHGMSFN-----DFDICLGDT 280

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L +         F   +SNPP+  KW+ D D   K+  N    R   G          F+
Sbjct: 281 LGEPCLTHEEGMFDVVISNPPYSLKWKSDGD---KQIANDSRFRDQGGFAPKDKADFAFI 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H  ++L+      G AAIV ++  L        E  IR++L+EN+ + A++ +  DLF+
Sbjct: 338 QHALSRLK----KDGVAAIVCATGILTRM---GREENIRKFLVENNYVHAVIHMAKDLFY 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L   K ++   KV  I+AT  +    N+      ++ +   +IL +Y  R
Sbjct: 391 GTGIETVILVLKKEKLDD---KVLFIDATQKFIKSSNK----NDLSLENVEEILRLYGDR 443

Query: 460 ENGKF-SRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           ++ +F S +   +     +    V   ++     ++  +  L +DI 
Sbjct: 444 KSEEFLSYLASNKEVVDNKYDLGVKAYVKRRIEKEEVNIKELVSDIK 490


>gi|260061349|ref|YP_003194429.1| type I restriction-modification system DNA methylase [Robiginitalea
           biformata HTCC2501]
 gi|88785481|gb|EAR16650.1| type I restriction-modification system DNA methylase [Robiginitalea
           biformata HTCC2501]
          Length = 531

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/572 (18%), Positives = 210/572 (36%), Gaps = 78/572 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+ T +  +    +W  A +L G      +   +LP   L+ +    E  R  + + + 
Sbjct: 1   MTQ-TKADINFEKELWNAANELRGAVAENQYKDYVLPLIFLKHMSERYEMRRDELMDAFE 59

Query: 61  A-----FGGSNID-----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN----------- 99
                 +G S  D      +    ++  ++    + +   L     R+N           
Sbjct: 60  DEASNYYGLSEDDRNYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDT 119

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNI 158
           L+  + +F    K I       S +     +  +  +    S  +L   +     ++  +
Sbjct: 120 LDETLGAFRPELKGILPRIFVKSQLT----SRQVGGLINLLSHPKLSVKENPESDILGRV 175

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+ I +F      GA  F TP  +V L   ++                 ++D  CG+GG
Sbjct: 176 YEYYIGKFAIAEGSGAGQFFTPGSIVRLMVEMIEPYKG-----------KIFDAACGSGG 224

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               ++  +   G   +    +  +GQE    T  +C   + +R L  D        ++ 
Sbjct: 225 MFVQSLKFLEAHGGDKRN---ISIYGQERYSGTLRLCKMNLALRDLSFD--------VRL 273

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSM 336
           G +L +D F      Y L NPPF       +D  +K+ +      FGP        + + 
Sbjct: 274 GDSLLQDKFPDLEADYILVNPPFNVSQWHPEDLPDKDPRL-----FGPKEEFTTDGNANY 328

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +++    + L    +  G AA+V+++  +  G    GE  +R+ +++  +I+AIV LP  
Sbjct: 329 MWMQTFWSHL----SNTGTAAVVMANGAMTTG--NKGEKNVRQHMVDEGMIDAIVRLPDK 382

Query: 397 LFFRTNIATYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LF  T I   ++ILS  +        ER+ ++  I+ + +    R E ++ R+ ++    
Sbjct: 383 LFLTTGIPACIFILSKNRDGKDGVHRERKEEILFIDMSKMG---RMESRRLRVFDEADLI 439

Query: 451 QILDIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILDK---TGLARLEADIT-- 503
           + ++ Y +  N   K +   + +        +    +  + L      G+   E D    
Sbjct: 440 KAVEAYHAWRNLPNKDNAPYENQDGFCYAATLEEVQKQDYKLTPGIYVGIEEEEDDGIPF 499

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             KL+ L         +    +       + F
Sbjct: 500 EEKLAILKAQLKEQFREGEDLKRKILDNFDQF 531


>gi|325125903|gb|ADY85233.1| HsdM [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 376

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 161/401 (40%), Gaps = 50/401 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +  + +WK A+ L G+   +++  V+L    L+ +  A E     + +        + D 
Sbjct: 9   NFEDKLWKAADALRGNMDASEYRNVVLGLIFLKYVSDAFEEKHQELLKSDFPEDAEDRD- 67

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSS 122
                 A   F+   +     +             +     I   + + + I      S 
Sbjct: 68  ---AYEAENIFWIPKQARWENIAGASKTQQIGEVIDQAMEAIEKENPSIQGILSKNYESP 124

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            + +      L K+    S I++      D  V+  +YE+ +++F S    G  +F TPR
Sbjct: 125 DLDK----SRLGKVVDLISDIDVGSKESQDRDVLGRVYEYFLQQFASAEGRGGGEFYTPR 180

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V     ++                 +YDP CG+GG    +   V +   H      L 
Sbjct: 181 SIVKTLVEMIEPYKG-----------RVYDPCCGSGGMFVQSEEFVKE---HQGRIDDLA 226

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +G+E  P T  +    + IR +++D          QG T + D+  G  F Y L+NPPF
Sbjct: 227 VYGEESNPTTWKLAKMNLAIRGIDND------LGPHQGDTFANDMHKGTHFDYILANPPF 280

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K    +       K  +  R+  G+P  S+ +  ++ H+ +KL+      G+A  VL+
Sbjct: 281 NIKDWGGE-------KLKDDARWKYGVPPESNANYAWMEHIISKLQ----PDGKAGFVLA 329

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRT 401
           +  L   R    E  IR+ +LE+D I+AIVALP  ++ F T
Sbjct: 330 NGALSTSR--KEELAIRKAVLEDDKIDAIVALPGANVLFNT 368


>gi|171920731|ref|ZP_02931943.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185178769|ref|ZP_02964571.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024396|ref|ZP_02997059.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518458|ref|ZP_03003945.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524187|ref|ZP_03004251.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867477|ref|ZP_03079481.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273583|ref|ZP_03206119.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225550744|ref|ZP_03771693.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551327|ref|ZP_03772273.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903476|gb|EDT49765.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209382|gb|EDU06425.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018667|gb|EDU56707.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998124|gb|EDU67221.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195659966|gb|EDX53346.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660953|gb|EDX54206.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198250103|gb|EDY74883.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379142|gb|EEH01507.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379898|gb|EEH02260.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 510

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 104/522 (19%), Positives = 212/522 (40%), Gaps = 61/522 (11%)

Query: 1   MTEFTGSAASL---ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M     +  ++   AN +W + ++L G+     +  +I+    L+ +        +A+++
Sbjct: 1   MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKD 60

Query: 58  KYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           KY      +I  +S           +      +   S ++  +             I + 
Sbjct: 61  KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   K +F     S  + +      L  + + F+  +       + ++  IYE+ +  F 
Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDFS--QFNEDLVGRIYEYFLGEFF 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   +F TP+ VV L   +L           P     +YDP CGTGG    A N++
Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +     LV +GQE + +T  +    +L+     +   D+        T  +DL 
Sbjct: 224 HEQNKDY---NKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIHLGRGSEDTFKEDLH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G++F   ++NPPF  K    ++ +  E       RF  G+P  ++ +  +L+H+ +KL 
Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKL- 329

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G+A ++L++  L    +   ES +R+ ++E ++++AI++LP  LF+ T I+  +
Sbjct: 330 ---NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---- 463
           W  +  K  E    V  I A+ +      + KK R +  D   +I ++Y   E G+    
Sbjct: 385 WFFNKNKENE---NVLFIEASKMGEL---KTKKLRFLTKDDISKIKNVYDKHEQGEDVNV 438

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             F++             ++    + F  +     +L  +I 
Sbjct: 439 VGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIK 480


>gi|291614892|ref|YP_003525049.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1]
 gi|291585004|gb|ADE12662.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1]
          Length = 689

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/658 (18%), Positives = 246/658 (37%), Gaps = 74/658 (11%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                  L   +W  A+ L    D K +++   +L    L+  +       + +  +Y  
Sbjct: 2   NKEQLKKLEADLWSAADKLRANSDLKSSEYATPVLGLIFLKFADNNYRRFETEIHAEYTK 61

Query: 62  FGGSNIDLE-SFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKA 113
             GS  + + S + +    FY         L +     N+          I  +    + 
Sbjct: 62  LKGSRREKKISDIAIEKCGFYLPDHARYEHLLNLPEEKNIAKALKEAMKAIEEYKPELEG 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    D  + + R +K  +  ++ + F+ I   P      +   IYE+ +  F     + 
Sbjct: 122 VLPK-DEYAALTRTDK-TIPQQLLRTFADI---PADATGDLFGQIYEYFLSEFARSEGQK 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV L   ++                 ++DP CG+GG    +   +A+    
Sbjct: 177 GGEFFTPRSVVRLMVEIIEPH-----------GGKVFDPACGSGGMFVQSAQFIAEHRKE 225

Query: 234 HK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR- 291
            K     +   GQE   +T  +    + +  L  +         +Q +T  +D +     
Sbjct: 226 LKGSESGVYVCGQEKTRDTVNLAKMNLAVNGLRGEI--------KQANTYYEDPYQSFGA 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFLMHL 342
           F Y L+NPPF    +    +VEK+ +    G         +   G   + +G+ L++   
Sbjct: 278 FDYVLANPPFNVD-DVSLSSVEKDKRFNTYGIPRNKSKVKKADAGKETVPNGNYLWINLF 336

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           A  L+      GRAA+V+++S      A   E++IR+ L+E +LI A++ LP+++F+   
Sbjct: 337 ATSLKAQ----GRAALVMANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVT 389

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL---DIYVSR 459
           +   LW     KT++   K+  I+A +++T I    +  R  +++  + I     ++  R
Sbjct: 390 LPATLWFFDKAKTDD---KILFIDARNIFTQI---DRAHREFSEEHIQNIAIISQLHKGR 443

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              KF +++D R F     +++        +    L  L+     + +  L Q +    L
Sbjct: 444 RE-KFVQLID-RYFAAGMQRLVENKTNVEPVSAQLLEVLDDAGGKQAVGELVQQWAG--L 499

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP---RADPVTD 576
             +  +   Y    +      K N+A+    +A   F  A        D    + +    
Sbjct: 500 AKLKTRYEQYQEKHADESAVDKKNKAQQQLREAFDPFFAALHEGLKHLDKVVRQHEKQQA 559

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
              +       T+ +      ++++   +EV     +A I   +I    +   +  YE
Sbjct: 560 AQAQAEGKRATTDRKTNALKGALEE-LHKEVK----NAEIFYQYIHWLQERFPKAEYE 612


>gi|301633155|gb|ADK86709.1| type I restriction-modification system, M subunit [Mycoplasma
           pneumoniae FH]
          Length = 543

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/566 (16%), Positives = 202/566 (35%), Gaps = 64/566 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVR 56
           + T     +   IW+ A+ L G     DF   +L     R L   L         R+   
Sbjct: 4   KRTEQRNGVEKKIWEIADKLRGTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRNNPD 63

Query: 57  EKYLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNN---LESYIASFSDN 110
             Y         +++    A      F   S+   + + S     N   L + +    D+
Sbjct: 64  FSYENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDIFDD 123

Query: 111 ---------------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE----LHPDTVP 151
                           K +F+DF+ S             K+ +  + I+       +   
Sbjct: 124 IEKSTELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFEKNS 183

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE LI  +     +   +F TP+DV  L   + +   D +          +YD
Sbjct: 184 IDAFGDAYEFLISMYAQNAGKSGGEFFTPQDVSELLARIAIGKKDTV--------DDVYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L   +  +       +   ++  +GQE+   T+ +C   M++  ++      
Sbjct: 236 MACGSGSLLLQVIKVLGK-----EKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNI 290

Query: 272 LSKNI---QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           ++ +    ++      +      F   +SNPP+   W  DK +      +    +    L
Sbjct: 291 INADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKS---NLVSDVRFKDAGTL 347

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F++H    L       G AAIV     L+       E  IR++L++ + ++
Sbjct: 348 APNSKADLAFVLHALYVL----GQEGTAAIVCFPGILYR---EGKEQTIRKYLVDQNFVD 400

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP++LF  T+IAT + +L  +K  +++  +  I+ ++ +       KK   ++   
Sbjct: 401 AVIQLPSNLFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFVR----EKKNNRLSPKN 454

Query: 449 RRQILDIYVS-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I+D + S +E   F++ ++          +     ++   +K  L     + +  ++
Sbjct: 455 IEKIVDCFNSKKEEANFAKAVERDKIRESNYDLTVGKYVNSEAEKEELDIKVLNHSIDEI 514

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAE 533
               +     I   +      +   +
Sbjct: 515 VDKQKDLRTKIKDIIQDIKVDFDNID 540


>gi|209554541|ref|YP_002284449.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209542042|gb|ACI60271.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 510

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/522 (19%), Positives = 212/522 (40%), Gaps = 61/522 (11%)

Query: 1   MTEFTGSAASL---ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M     +  ++   AN +W + ++L G+     +  +I+    L+ +        +A+++
Sbjct: 1   MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKD 60

Query: 58  KYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           KY      +I  +S           +      +   S ++  +             I + 
Sbjct: 61  KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   K +F     S  + +      L  + + F+  +       + ++  IYE+ +  F 
Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDFS--QFNEDLVGRIYEYFLGEFF 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   +F TP+ VV L   +L           P     +YDP CGTGG    A N++
Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +     LV +GQE + +T  +    +L+     +   D+        T  +DL 
Sbjct: 224 HEQNKDY---NKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIHLGRGSEDTFKEDLH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G++F   ++NPPF  K    ++ +  E       RF  G+P  ++ +  +L+H+ +KL 
Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKL- 329

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G+A ++L++  L    +   ES +R+ ++E ++++AI++LP  LF+ T I+  +
Sbjct: 330 ---NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---- 463
           W  +  K  E    V  I A+ +      + KK R +  D   +I ++Y   E G+    
Sbjct: 385 WFFNKNKENE---NVLFIEASKMGEL---KTKKLRFLTKDNISKIKNVYDKHEQGEDVNV 438

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             F++             ++    + F  +     +L  +I 
Sbjct: 439 VGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIK 480


>gi|186701606|ref|ZP_02971313.1| type I restriction-modification system, M subunit family
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|186700836|gb|EDU19118.1| type I restriction-modification system, M subunit family
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 510

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/525 (20%), Positives = 213/525 (40%), Gaps = 61/525 (11%)

Query: 1   MTEFTGSAASL---ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M     +  ++   AN +W + ++L G+     +  +I+    L+ +        +A++E
Sbjct: 1   MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKE 60

Query: 58  KYLAFGGSNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           KY      +I  +S           +      +   S ++  +             I + 
Sbjct: 61  KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   K +F     S  + +      L  + + F+  +       + ++  IYE+ +  F 
Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDFS--QFNEDLVGRIYEYFLGEFF 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   +F TP+ VV L   +L           P     +YDP CGTGG    A N++
Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +     LV +GQE + +T  +    +L+     +   D+        T  +DL 
Sbjct: 224 HEQNKDY---NKLVIYGQEYQSQTWKLAKINLLLNGFNEN---DIHLGRGSEDTFKEDLH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G++F   ++NPPF  K    ++ +  E       RF  G+P  ++ +  +L+H+ +KL 
Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKL- 329

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G+A ++L++  L    +   ES +R+ ++E ++++AI++LP  LF+ T I+  +
Sbjct: 330 ---NSRGKAGVILANGSL--SSSNKEESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---- 463
           W  +  K  E    V  I A+ +      + KK R +  D   +I ++Y   E G+    
Sbjct: 385 WFFNKNKENE---NVLFIEASKMGEL---KTKKLRFLTKDDILKIKNVYDQHEQGEDVNV 438

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
             F++             ++    + F  +     +L  +I   K
Sbjct: 439 VGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKELK 483


>gi|116871898|ref|YP_848679.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740776|emb|CAK19896.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 529

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 101/560 (18%), Positives = 198/560 (35%), Gaps = 68/560 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T   A +    W       G    T +   I      + L        + V     
Sbjct: 1   MALSTEQKAKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEK 56

Query: 61  AFGGSNID----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-------- 108
                + D    L    K  GY+      +          R N+     +F+        
Sbjct: 57  WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQVAF 116

Query: 109 ---DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              ++ + IF+   F S         +A ++  + +  S  E       +  +S+IYE+L
Sbjct: 117 EAKNDFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYL 175

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L  
Sbjct: 176 VAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLT 229

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             +++ + G       ++  +GQE +   + +    +++  +E +       NI    TL
Sbjct: 230 TASYMKNSGRRG----VIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTL 280

Query: 283 SKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             D   G        + F   ++NPP+   W        K+ ++    R   G+   +  
Sbjct: 281 ESDWPDGVVDGKDTPRMFDVVMANPPYSAHWNN------KDREDDPRWR-EYGVSPKTKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L       GR AI+L    LF    G+ E  IR+ L++   IEAI+  P
Sbjct: 334 DYAFLLHCLYHL----EDNGRMAIILPHGVLFR---GASEGRIRKALIDKHQIEAIIGFP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             LF    I   + IL   + E     V  I+A+  +       KK+  +  +   +I+D
Sbjct: 387 EKLFLNAAIPVCVVILRKNRIES---DVLFIDASKEFEK----TKKQNSLRSEDVDKIVD 439

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             ++R E  K+S +            +  P  +    ++  +  +        L+   + 
Sbjct: 440 TVINRKEINKYSHVATLDEIKENDYNLNIPRYVDTFEEEETIDLVALGNEMVALNADIKK 499

Query: 514 FWLDILKPMMQQIYPYGWAE 533
              D L  + +        +
Sbjct: 500 AETDFLGLLDELAVTTDTKD 519


>gi|239995892|ref|ZP_04716416.1| hypothetical protein AmacA2_15636 [Alteromonas macleodii ATCC
           27126]
          Length = 333

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 137/343 (39%), Positives = 196/343 (57%), Gaps = 24/343 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ +V ++     
Sbjct: 3   TNNNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKDSVVKEAERVK 62

Query: 64  GSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             N+  E+  K             G SF+NTS   L  +G ++ + NL +Y+ SFS +A+
Sbjct: 63  AMNLPEEAQEKMLIRATQTTNNPDGLSFFNTSPMDLGKMGQSDIKANLGTYVQSFSSDAR 122

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IFE F F   +  L+ A LLYK+ K F+  +L P  + +  M  ++E LIRRF    +E
Sbjct: 123 EIFEHFKFDEFVGLLDDANLLYKVVKKFATTDLSPKNISNHDMGLVFEELIRRFAESSNE 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   
Sbjct: 183 TAGEHFTPRDIVRLTTSLVFMEDDDALTKE-GIIRTIYDPTAGTGGFLSSGMEYVHELNP 241

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +     ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F
Sbjct: 242 N----AVMRAFGQELNPESYAICKADMLIKGQD-------VSRIKLGNTLSNDQLPADQF 290

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDG 334
            Y LSNPPFG  W+K +  ++ EH   G  GRFG GLP++SDG
Sbjct: 291 DYMLSNPPFGVDWKKIESDIKDEHNLEGFDGRFGAGLPRVSDG 333


>gi|299822015|ref|ZP_07053902.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Listeria grayi DSM 20601]
 gi|299816643|gb|EFI83880.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Listeria grayi DSM 20601]
          Length = 531

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/544 (17%), Positives = 196/544 (36%), Gaps = 64/544 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +    N +W       G    T +   I      + L         +V          + 
Sbjct: 4   SNEQQNKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATQWLESVLRGESWESIYSQ 63

Query: 68  D----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAK 112
           D    L+   K  GY+    + +S         + N+     +F             + +
Sbjct: 64  DPARSLDYMKKNLGYAIRPNNFFSDWKKAIEEDQFNIGLMTDTFGHFNQQIAFEAKSDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIEVLSAPEFDLSG-GDDAISDIYEYLVAKFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++  +   +L    +           ++YDPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISDVMAQILTFGREEA------EHFSIYDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    ++   GQE +   + +    +++  +E +        I    TL  D   G
Sbjct: 237 SHKRG----MIKYFGQEKDATPYRLSRMNLMMHGVEYNDVS-----INHADTLKSDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVEGKDNPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGVAPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF G A   E  IR+ L++   IEA++  P  LF  T
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I   + IL   + E     V  I+A+  +  ++N+ +    +  +   +I+D  V R+ 
Sbjct: 394 SIPVCVLILRKNRVES---DVLFIDASKDFEKMKNQKR----LRPEDVAKIVDTVVHRKE 446

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +            +  P  +    ++  +  +E      K++   +    + L 
Sbjct: 447 MEKYAHIATLDEIKENDYNLNIPRYVDTFEEEEPIDIVEVSQEITKINGEIKQAESEFLS 506

Query: 521 PMMQ 524
            + +
Sbjct: 507 MLDE 510


>gi|229548133|ref|ZP_04436858.1| possible adenine specific DNA-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|256958291|ref|ZP_05562462.1| type I restriction enzyme M protein [Enterococcus faecalis DS5]
 gi|257091258|ref|ZP_05585619.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|307274413|ref|ZP_07555597.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2134]
 gi|312905317|ref|ZP_07764432.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|229306739|gb|EEN72735.1| possible adenine specific DNA-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|256948787|gb|EEU65419.1| type I restriction enzyme M protein [Enterococcus faecalis DS5]
 gi|257000070|gb|EEU86590.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|295114355|emb|CBL32992.1| type I restriction system adenine methylase (hsdM) [Enterococcus
           sp. 7L76]
 gi|306508923|gb|EFM78009.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2134]
 gi|310631341|gb|EFQ14624.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|315036579|gb|EFT48511.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0027]
 gi|315145850|gb|EFT89866.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2141]
 gi|315162496|gb|EFU06513.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0645]
 gi|315578596|gb|EFU90787.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0630]
          Length = 530

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/544 (17%), Positives = 192/544 (35%), Gaps = 64/544 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFG 63
           +      +W       G    T +   I      + L       L+        + +   
Sbjct: 4   SQEQQTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQ 63

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-----------NAK 112
             +  LE   K  GY+      +          R N+     +F             + +
Sbjct: 64  NPSKALEYMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    +           ++YDPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTSGREE------EESFSIYDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    ++   GQE +   + +    +++  +E +        I    TL  D   G
Sbjct: 237 SHKRG----MIKYFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVDGKDNPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGIAPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF G A   E  IR+ L++   IE ++  P  LF  T
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I   + IL   +T      +  ++A+  +  +    KK+  +  +   +I+D  V R E
Sbjct: 394 SIPVCVLILRKNRTAS---DILFVDASREFEKL----KKQNHLRPEDVDKIVDTVVQRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +  +   +  +   +    ++L 
Sbjct: 447 IEKYSHLATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEAELLA 506

Query: 521 PMMQ 524
            +  
Sbjct: 507 MLDD 510


>gi|13508081|ref|NP_110030.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129]
 gi|12229979|sp|P75436|T1MD_MYCPN RecName: Full=Putative type I restriction enzyme MpnORFDP M
           protein; Short=M.MpnORFDP
 gi|1674186|gb|AAB96142.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129]
          Length = 543

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 95/566 (16%), Positives = 202/566 (35%), Gaps = 64/566 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVR 56
           + T     +   IW+ A+ L G     DF   +L     R L   L         R+   
Sbjct: 4   KRTEQRNGVEKKIWEIADKLRGTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRNNPD 63

Query: 57  EKYLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNN---LESYIASFSDN 110
             Y         +++    A      F   S+   + + S     N   L + +    D+
Sbjct: 64  FSYENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDIFDD 123

Query: 111 ---------------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE----LHPDTVP 151
                           K +F+DF+ S             K+ +  + I+       +   
Sbjct: 124 IEKSTELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFEKNS 183

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE LI  +     +   +F TP+D+  L   + +   D +          +YD
Sbjct: 184 IDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDTV--------DDVYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L   +  +       +   ++  +GQE+   T+ +C   M++  ++      
Sbjct: 236 MACGSGSLLLQVIKVLGK-----EKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNI 290

Query: 272 LSKNI---QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           ++ +    ++      +      F   +SNPP+   W  DK +      +    +    L
Sbjct: 291 INADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKS---NLVSDVRFKDAGTL 347

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F++H    L       G AAIV     L+       E  IR++L++ + ++
Sbjct: 348 APNSKADLAFVLHALYVL----GQEGTAAIVCFPGILYR---EGKEQTIRKYLVDQNFVD 400

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP++LF  T+IAT + +L  +K  +++  +  I+ ++ +       KK   ++   
Sbjct: 401 AVIQLPSNLFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFVR----EKKNNRLSPKN 454

Query: 449 RRQILDIYVS-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I+D + S +E   F++ ++          +     ++   +K  L     + +  ++
Sbjct: 455 IEKIVDCFNSKKEEANFAKSVERDKIRESNYDLTVGKYVNSEAEKEELDIKVLNHSIDEI 514

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAE 533
               +     I   +      +   +
Sbjct: 515 VDKQKDLRTKIKDIIQDIKVDFDNID 540


>gi|300861380|ref|ZP_07107466.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849172|gb|EFK76923.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TUSoD Ef11]
          Length = 530

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/544 (17%), Positives = 192/544 (35%), Gaps = 64/544 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFG 63
           +      +W       G    T +   I      + L       L+        + +   
Sbjct: 4   SQEQQTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQ 63

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-----------NAK 112
             +  LE   K  GY+      +          R N+     +F             + +
Sbjct: 64  NPSKALEYMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    +           ++YDPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTSGREE------EESFSIYDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    ++   GQE +   + +    +++  +E +        I    TL  D   G
Sbjct: 237 SHKRG----MIKYFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVDGKDNPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGIAPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF G A   E  IR+ L++   IE ++  P  LF  T
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I   + IL   +T      +  ++A+  +  +    KK+  +  +   +I+D  V R E
Sbjct: 394 SIPVCVLILRKNRTAS---DILFVDASREFEKL----KKQNHLRPEDVDKIVDTVVQRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +  +   +  +   +    ++L 
Sbjct: 447 IEKYSHLATLDEIKENDYNLNIPRYVDTYEEELPVDLVALNNDIKNTNEEIKKVEAELLA 506

Query: 521 PMMQ 524
            +  
Sbjct: 507 MLDD 510


>gi|313611002|gb|EFR85913.1| type I restriction enzyme EcoprrI M protein [Listeria monocytogenes
           FSL F2-208]
          Length = 417

 Score =  270 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 164/446 (36%), Gaps = 68/446 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRS----------AV 55
           ++  +   +W  A +L G    + +   +L     + L    LE  +S           +
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGKGQLSEAEL 62

Query: 56  REKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTR-----------NNLESY 103
            E+Y+     + + L+  ++     F        + L                 NN E  
Sbjct: 63  VEEYVKDRAYHGENLDKMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 IA--SFSDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           IA    SD+ + +F     D + T       E++  +  + + F  + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNM-VALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIA---------AKTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +      +   L  +GQE    T+ +    +L+  +  +       ++
Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVHPEK-----MSV 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + G TLS+D             F   + NPP+        +    + +    G     LP
Sbjct: 283 KNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLANWNKSNLKVSDPRFEIAG----VLP 338

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I+ 
Sbjct: 339 PDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYIDT 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT 415
           I+ LP +LF  T I   + IL   + 
Sbjct: 392 IIGLPGNLFTNTGIPVCVLILKKNRA 417


>gi|42525885|ref|NP_970983.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|41815935|gb|AAS10864.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
          Length = 871

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 110/629 (17%), Positives = 226/629 (35%), Gaps = 92/629 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L   +W + + L G    + +   IL    ++ +                     ++
Sbjct: 5   KSELYGSLWASCDSLRGGMDSSQYKDYILTLLFVKYVSDKY----------------KDM 48

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIA 125
                    G SF    +  L+  G       ++  IA  ++  + + I ++  F+    
Sbjct: 49  PYGEIEIPEGGSF----DDMLALRGKKGIGEGIDKVIAKLAEANDLRGIIDNAYFNDPTK 104

Query: 126 RLEKAGLLYKICKNFSGI-----ELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 ++ K+ +  S           +    D ++ + YE+L++ F +E  +    F T
Sbjct: 105 FGSGQEMVDKLTELLSIFCDKMPNFGKNRAEGDDIIGDAYEYLMKNFATESGKSKGQFYT 164

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +V  +   ++        +       TLYDP CG+G  L  A             PP 
Sbjct: 165 PAEVSRILAHVIGIEKAKSGES------TLYDPACGSGSLLIRAAETA---------PPN 209

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQE +  T  +    +++  + +   +  +   +       D    ++F + + NP
Sbjct: 210 VAVFGQEKDITTAGLAKMNLVLHNVATAEIKSGNTFSEPKYKKHDDETALRQFDFAVVNP 269

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PF  K           H   + GRF      P   +G   +L+H+   L+      G+AA
Sbjct: 270 PFSDKNWT--------HGLQDFGRFDGYEERPPEKNGDFAWLLHVIKSLKR----NGKAA 317

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++     E+
Sbjct: 318 VILPHGVLFRGNA---EASIRKALIKKGFIKGIIGLPPNLFYGTGIPACIIVIDKENAEK 374

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML--DYRTFG 474
           R+G + +I+A+  +    ++ +    + +    +I  ++ +++    +SR +  D     
Sbjct: 375 RKG-IFIIDASKDFIKDNDKNR----LRERDIYKITKVFNNKKELPYYSRFVFIDEIEQN 429

Query: 475 YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLH--------------QSFWLDIL 519
              + + R ++     +   + A L   I    +  L               +    D  
Sbjct: 430 DYNLNIPRYIQNGTSEEVQNIEAHLRGGIPSEDIENLSAYWDTFPKLKSSLFKPLRHDFC 489

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
               ++   YG  E     S  ++  +T   K  +       +      P+         
Sbjct: 490 SLAAEKDSLYGVIEDDKDFSNYADIIETAFEKWKRKAKKHLTSITNDTKPKELI------ 543

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVS 608
             + +  + EYE+V     I  Y V EV 
Sbjct: 544 RLLAELLIKEYESVHL---IDKYDVYEVL 569


>gi|284800797|ref|YP_003412662.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5578]
 gi|284993983|ref|YP_003415751.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5923]
 gi|284056359|gb|ADB67300.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5578]
 gi|284059450|gb|ADB70389.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5923]
          Length = 529

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 199/553 (35%), Gaps = 64/553 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +      +W       G    T +   I      + L        + V          + 
Sbjct: 4   STEQKTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGENWESVYSQ 63

Query: 68  D----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAK 112
           D    L    K  GY+      +          R N+     +F+           ++ +
Sbjct: 64  DSVKALNYMKKNLGYAIQPNEFFVDWKKAIDRDRFNIGMMTDTFTHFNQQIAFEAKNDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       +  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    + + K       +++DPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G       ++  +GQE +   + +    +++  +E +       NI    TL  D   G
Sbjct: 237 SGRRG----VIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVEGKDTPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGVSPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF    G+ E  IR+ L++   IEAI+  P  LF  T
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFR---GASEGRIRKALIDKHQIEAIIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I   + IL   + E     +  ++A+  +  I    KK+  +  +   +I+D  ++R E
Sbjct: 394 SIPVCVVILRKNRIES---DILFVDASKGFEKI----KKQNNLRSEDVEKIVDTVINRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +        L+   +    D L 
Sbjct: 447 IEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVTLNADIKKAETDFLG 506

Query: 521 PMMQQIYPYGWAE 533
            + +        E
Sbjct: 507 LLDELAVTPDTKE 519


>gi|283770885|ref|ZP_06343777.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461032|gb|EFC08122.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
          Length = 405

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 184/438 (42%), Gaps = 51/438 (11%)

Query: 93  STNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
           +T  R    S +   S+N    +F D D SST       E+  L+ K+  N   +     
Sbjct: 2   ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS 61

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R 
Sbjct: 62  DMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RH 113

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L              K   +    GQE    T+ +    ML+  +  + 
Sbjct: 114 VYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE- 162

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + +I+   TL    F G  F   ++NPP+  KW  D      E  +G        L
Sbjct: 163 ----NFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----L 213

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S     F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +
Sbjct: 214 APKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYL 266

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D 
Sbjct: 267 EAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDA 320

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI-- 502
           Q  +I++ Y  +E   K+S     +        + + R +          L +++ D+  
Sbjct: 321 QVERIINTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKN 380

Query: 503 TWRKLSPLHQSFWLDILK 520
             ++++ + Q     + +
Sbjct: 381 IDKEIAEIEQEINAYLKE 398


>gi|313610497|gb|EFR85650.1| type I restriction-modification system, M subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 529

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 195/553 (35%), Gaps = 64/553 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +      +W       G    T +   I      + L        + V          + 
Sbjct: 4   STEQKTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATYWLNGVLRGKTWESVYSQ 63

Query: 68  D----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAK 112
           D    L    K  GY+      +          R N+     +F+           ++ +
Sbjct: 64  DSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQIAFEAKNDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       +  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    + + K       +++DPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G       ++  +GQE +   + +    +++  +E +       NI    TL  D   G
Sbjct: 237 SGRRG----VIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVDGKDTPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGVSPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF    G+ E  IR+ L++   IE I+  P  LF   
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFR---GASEGRIRKALIDKHQIETIIGFPEKLFLNA 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            I   + IL   + E     V  I+A+  +       KK+  +  +   +I+D  ++R E
Sbjct: 394 AIPVCVVILRKNRIES---DVLFIDASKEFEK----TKKQNSLRSEDVDKIVDTVINRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +        L+   +    D L 
Sbjct: 447 IDKYSHIATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVSLNADIKKAETDFLG 506

Query: 521 PMMQQIYPYGWAE 533
            + +        E
Sbjct: 507 LLDELAVTPDTKE 519


>gi|16799597|ref|NP_469865.1| hypothetical protein lin0522 [Listeria innocua Clip11262]
 gi|16412962|emb|CAC95754.1| lin0522 [Listeria innocua Clip11262]
          Length = 529

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 199/553 (35%), Gaps = 64/553 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +      +W       G    T +   I      + L        + V          + 
Sbjct: 4   STEQKTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGENWENVYSQ 63

Query: 68  D----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAK 112
           D    L    K  GY+      +          R N+     +F+           ++ +
Sbjct: 64  DSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQIAFEAKNDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       +  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    + + K       +++DPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G       ++  +GQE +   + +    +++  +E +       NI    TL  D   G
Sbjct: 237 SGRRG----VIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVDGKDTPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGVSPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF    G+ E  IR+ L++   IEAI+  P  LF  T
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFR---GASEGRIRKALIDKHQIEAIIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I   + IL   + E     +  ++A+  +  I    KK+  +  +   +I+D  ++R E
Sbjct: 394 SIPVCVVILRKNRIES---DILFVDASKGFEKI----KKQNNLRSEDVEKIVDTVINRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +        L+   +    D L 
Sbjct: 447 IEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVTLNADIKKAETDFLG 506

Query: 521 PMMQQIYPYGWAE 533
            + +        E
Sbjct: 507 LLDELAVTPDTKE 519


>gi|283768149|ref|ZP_06341064.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|283462028|gb|EFC09112.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
          Length = 405

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 181/431 (41%), Gaps = 51/431 (11%)

Query: 93  STNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
           +T  R    S +   S+N    +F D D SST       E+  L+ K+  N   +     
Sbjct: 2   ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS 61

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R 
Sbjct: 62  DMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RH 113

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L                  +    GQE    T+ +    ML+  +  + 
Sbjct: 114 VYDPTCGSGSLLLRVGKETK----------VYRYFGQERNNTTYNLARMNMLLHDVRYE- 162

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + +I+   TL    F G  F   ++NPP+  KW  D      E  +G        L
Sbjct: 163 ----NFDIRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----L 213

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S     F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +
Sbjct: 214 APKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYL 266

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D 
Sbjct: 267 EAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDA 320

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI-- 502
           Q  +I+D Y  +E   K+S     +        + + R +          L +++ D+  
Sbjct: 321 QVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKN 380

Query: 503 TWRKLSPLHQS 513
             ++++ + Q 
Sbjct: 381 IDKEIAEIEQE 391


>gi|226223147|ref|YP_002757254.1| HsdM type IC modification subunit [Listeria monocytogenes
           Clip81459]
 gi|254993315|ref|ZP_05275505.1| HsdM type IC modification subunit [Listeria monocytogenes FSL
           J2-064]
 gi|225875609|emb|CAS04312.1| Putative HsdM type IC modification subunit [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 529

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/560 (18%), Positives = 199/560 (35%), Gaps = 68/560 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T     +    W       G    T +   I      + L        + V     
Sbjct: 1   MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56

Query: 61  AFGGSNID----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-------- 108
                + D    L    K  GY+      +          R N+     +F+        
Sbjct: 57  WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQIAF 116

Query: 109 ---DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              ++ + IF+   F S         +A ++  + +  S  E       +  +S+IYE+L
Sbjct: 117 EAKNDFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYL 175

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L  
Sbjct: 176 VAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLT 229

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             +++ + G       ++  +GQE +   + +    +++  +E +       NI    TL
Sbjct: 230 TASYMKNSGRRG----VIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTL 280

Query: 283 SKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             D   G        + F   ++NPP+   W        K+ ++    R   G+   +  
Sbjct: 281 ESDWPDGVVDGKDTPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGVSPKTKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L       GR AI+L    LF    G+ E  IR+ L++   IEAI+  P
Sbjct: 334 DYAFLLHCLYHL----EDNGRMAIILPHGVLFR---GASEGRIRKALIDKHQIEAIIGFP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             LF  T I   + IL   + E     V  ++A+  +  I    KK+  +  +   +I+D
Sbjct: 387 EKLFLNTPIPVCVVILRKNRIES---DVLFVDASKGFEKI----KKQNNLRSEDVEKIVD 439

Query: 455 IYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             ++R E  K+S +            +  P  +    ++  +  +        L+   + 
Sbjct: 440 TVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVALNADIKK 499

Query: 514 FWLDILKPMMQQIYPYGWAE 533
              D L  + +        E
Sbjct: 500 AETDFLGLLDELAVTADTKE 519


>gi|15672633|ref|NP_266807.1| type I restriction enzyme M protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12723556|gb|AAK04749.1|AE006298_2 type I restriction enzyme M protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|3057062|gb|AAC38346.1| HsdM [Lactococcus lactis]
          Length = 515

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/544 (16%), Positives = 184/544 (33%), Gaps = 64/544 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +    N +W       G    T +   I      + L          V          + 
Sbjct: 4   SNEQKNKMWALLNQTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYDQ 63

Query: 68  D----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAK 112
           D    L+   +  GY+      +          R N+     +F            D+ +
Sbjct: 64  DPVRALDYMKQKLGYAIQPKEFFKDWEAAIHEERFNIPMISDTFGHFNQQIAFEAKDDFE 123

Query: 113 AIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S+        +A ++  + +  S  E    T  D V S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSSDLGSNAQARASVMISMIELLSAPEFDLSTGGDTV-SDIYEYLLEKFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++  +   +L                ++YDP  G+   L    +H+  
Sbjct: 183 LASDMGQYYTPKEISEVMARILTFGKAD------EDNFSIYDPAVGSASLLITTASHMKH 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                     +   GQE +   + +    +++  +E +  +     I    TL  D   G
Sbjct: 237 SNQRG----AIKYFGQEKDATPYRLARMNLMMHNIEYNDIQ-----IHHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VIEGKDTPRMFDAVMANPPYSAHWNN------KDREDDPRFR-EYGIAPKTKADYSFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
                +      GR AI+L    LF G A   E  IR+ L++   IEA++  P  LF  T
Sbjct: 341 CLYHTK----ESGRVAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   + IL   +       +  ++A+  +  ++N    ++ +  +   +I +  + R+ 
Sbjct: 394 GIPVCVLILKKNRANS---DILFVDASQGFEKMKN----QKQLRPEDIDKITETVIHRKA 446

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +   +      ++          +  
Sbjct: 447 VDKYSHLATLEEVIENDYNLNIPRYVDTFEEEESIDLADIQGQIDEVDAEIAKANQTLAN 506

Query: 521 PMMQ 524
              +
Sbjct: 507 YFKE 510


>gi|300853531|ref|YP_003778515.1| restriction-modification system [Clostridium ljungdahlii DSM 13528]
 gi|300433646|gb|ADK13413.1| restriction-modification system [Clostridium ljungdahlii DSM 13528]
          Length = 901

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 119/619 (19%), Positives = 224/619 (36%), Gaps = 75/619 (12%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA----- 76
           +    +  ++   IL F   + L    E   +  R++ L         E  VK A     
Sbjct: 1   MRSKIEANEYKDFILGFIFYKYLS---EKEVAFFRKERLTDADIEKVTEDDVKYASHVRE 57

Query: 77  --GYSF-----YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             GY       ++T     +    +N R+ L ++  +  D  + +FE   F++    L K
Sbjct: 58  NLGYFIAYENLFSTWLKKGNDFDISNVRDALSAFDRNIDDVYRKVFEKI-FNTLQTGLSK 116

Query: 130 --------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                      +  + K    I +        V+  IYE+LI  F +   + A +F TP 
Sbjct: 117 LGETAQAQTKAVKSLLKLIRKIPMDGKQ-DYDVLGFIYEYLISMFAANAGKKAGEFYTPH 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  L + ++ +               +YDPT G+G  L +  N              + 
Sbjct: 176 EVSVLMSEIIAEH------LKNRKQIKIYDPTSGSGSLLINIGN---SAAKFIDGENKID 226

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRF-----HYC 295
            + QEL+  T+ +    +++R +        + +  +      +D    K +        
Sbjct: 227 YYAQELKENTYNLTRMNLVMRGISPANINVRNGDTLEDDWPFFEDTDKDKTYKFIPVDAV 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPP+ +KW+      +  +K         G+   S     FL+H    L+      G 
Sbjct: 287 VSNPPYSQKWDPSDKEFDPRYKY-------YGVAPKSKADYAFLLHDLYHLK----DDGI 335

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             IVL    LF    G  E +IR  L+E + I+AI+ LP ++FF T I T + +L   + 
Sbjct: 336 MTIVLPHGVLFR---GGEEGKIREKLIEKNRIDAIIGLPPNIFFGTGIPTIIMVLKRIRP 392

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFG 474
                 V +I+A+  +  +     K   +     ++I D   SRE   K+S ++   T  
Sbjct: 393 TS---DVLIIDASKGFEKV----GKNNKLRACDIKKIADTVKSRESIEKYSTLVSKETIR 445

Query: 475 YR--RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                + + R +      +   + A +   I  +++  L + +  +    +   I+    
Sbjct: 446 ENGYNLNIPRYVNSLEPAESWDIHATMFGGIPVKEVDQLFEYW--EAFPELKDAIFRKIS 503

Query: 532 AESFVKES--IKSNEAKTLKVKASKSFIVAFINAFGRKDPR--ADPVTDVNGEWIPDTNL 587
            E    +   IK+       +K  K         F  +      + + DV+ E   +   
Sbjct: 504 NEYLAVKCDDIKAAITSHESLKIYKQAFSNEFGNFYEELKNDLIEEILDVSAEHEKEKVS 563

Query: 588 TE----YENVPYLESIQDY 602
            +     ENV   +  + Y
Sbjct: 564 KDIFIRIENVKLADKYKAY 582


>gi|323441216|gb|EGA98897.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus O46]
          Length = 355

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/391 (25%), Positives = 170/391 (43%), Gaps = 48/391 (12%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKI 136
             T ++ +  L +T  R    S +   S+N    +F D D SST       E+  L+ K+
Sbjct: 5   IETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKV 63

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             N   +      +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D
Sbjct: 64  MVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD 123

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            L        R +YDPTCG+G  L              K   +    GQE    T+ +  
Sbjct: 124 KL--------RHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLAR 165

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             ML+  +  +     + +I+   TL    F G  F   ++NPP+  KW  D      E 
Sbjct: 166 MNMLLHDVRYE-----NFDIRNDDTLENPAFLGTTFDAVIANPPYSAKWTADSKFENDER 220

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +G        L   S     F+ H+ + L    +  G  A+VL    LF G A   E  
Sbjct: 221 FSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGV 268

Query: 377 IRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +
Sbjct: 269 IRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGK 326

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           N    +  ++D Q  +I++ Y  +E   K+S
Sbjct: 327 N----QNHLSDTQVERIINTYKGKETIDKYS 353


>gi|89900159|ref|YP_522630.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89344896|gb|ABD69099.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 697

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 181/721 (25%), Positives = 291/721 (40%), Gaps = 97/721 (13%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+  G+     A  IW  A+ L G   K +++   ++PF  L  LE  L   +     +
Sbjct: 1   MTQKIGAGLLEYAGKIWDTADTLRGAGIKESEWPTYMMPFFALMMLESRLRRFKQERIAE 60

Query: 59  YLAFGGSNIDLESF---------VKVAGYSFYNTSEYSLSTLGST------NTRNNLESY 103
           Y    G+  D E            K  G  ++         L  T      N  N L S+
Sbjct: 61  YEEETGAAFDPEDATHAKWLDDTAKAVGKGYHKDLLLHDKGLRETCLVPGGNFLNRLLSH 120

Query: 104 IASFSDNAK-----------AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + S+  + K           A F D    ++         LY   + ++ I+L P    +
Sbjct: 121 LNSYDPDTKKLLGIDYAQGSAKFLDMQGKASDLNARDNNPLYPFAQKWASIDLTP--FDN 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             ++ I EH+ R++    +E A +  TP DV+ LATA++++       +    I  +YD 
Sbjct: 179 SEITTIEEHIKRKWADISAETAGEQYTPSDVIDLATAIIIE--LRREGKGGTGIADVYDM 236

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G FL    + + D          +   GQEL     A+         +E+  R D 
Sbjct: 237 ACGGGNFLFATEDALRDAFPKL----SVRTRGQELNDPLFALAS-------IEARFREDA 285

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-I 331
              I+ G+TL+ DLF   +F   ++NPP+G  W+  K ++  +      GRF        
Sbjct: 286 --QIEWGNTLTNDLFLLDKFDAIVANPPYGVDWKDFKQSLGMDAS----GRFAKDRMPPT 339

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           SDG +LFL H A  L       G AAIV S S LF+G AG GESE RRWL++  D++EAI
Sbjct: 340 SDGQLLFLQHAAFHLSEV----GVAAIVHSGSTLFSGDAGGGESETRRWLIQQQDIVEAI 395

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QR 449
           + LP + FF T I+TYLWIL+  K + R+GKV LINA D +  ++    K+    D+   
Sbjct: 396 IQLPKNEFFNTGISTYLWILNRAKPQARKGKVLLINAEDQFVKLKKNLNKKNCKIDEANC 455

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT------ 503
             I+  + + ++G  S++L      Y +++++     +          L  ++       
Sbjct: 456 AAIVKAFRACKDGPISKVLTVDQLLYNKVEIILHRHDAEGRAIQEETALNGEVITVTIGG 515

Query: 504 ---WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK-----SNEAKTLKVKASKS 555
                K  PL +   L   +           AE+   +S K      NE   +++    +
Sbjct: 516 QSHIIKNGPLIKPDHLTTKEAAAAFNEAIKAAETLTVQSGKLTYTRDNETGAIRLDDGTT 575

Query: 556 FIVAFINAFGRKDP--RADPVTDVNGEWIPDTNL-TEYENVPYLES-------IQDYFVR 605
                +     K    +A     +  E         + E   +          I+D+   
Sbjct: 576 LSELGLGVLAVKAKVAKARGAEVLKVEVTLGPLKEKDTETTAFSFDPAGNDAIIRDFLAT 635

Query: 606 EVSPH---VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
            V      VPDA                VG EINFN+ F +      ++D+  +L  + A
Sbjct: 636 WVKEPFERVPDA--------------VTVGCEINFNKQFPKKSEVGTVKDLLEKLHRLNA 681

Query: 663 Q 663
           +
Sbjct: 682 K 682


>gi|257088129|ref|ZP_05582490.1| type I restriction enzyme M protein [Enterococcus faecalis D6]
 gi|256996159|gb|EEU83461.1| type I restriction enzyme M protein [Enterococcus faecalis D6]
 gi|315026886|gb|EFT38818.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2137]
          Length = 530

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/544 (17%), Positives = 192/544 (35%), Gaps = 64/544 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFG 63
           +      +W       G    T +   I      + L       L+        + +   
Sbjct: 4   SQEQQTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQ 63

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-----------NAK 112
             +  LE   K  GY+      +          R N+     +F             + +
Sbjct: 64  NPSKALEYMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    +           ++YDPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTSGREE------EESFSIYDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    ++   GQE +   + +    +++  +E +        I    TL  D   G
Sbjct: 237 SHKRG----MIKYFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVDGKDNPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGIAPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF G A   E  IR+ L++   IE ++  P  LF  T
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
           +I   + IL   +T      +  ++A+  +  +    KK+  +  +   +I+D  V R E
Sbjct: 394 SIPVCVLILRKNRTAS---DILFVDASREFEKL----KKQNHLRLEDVDKIVDTVVQRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +  +   +  +   +    ++L 
Sbjct: 447 IEKYSHLATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEAELLS 506

Query: 521 PMMQ 524
            +  
Sbjct: 507 MLDD 510


>gi|229496095|ref|ZP_04389817.1| type I restriction-modification system, M subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316991|gb|EEN82902.1| type I restriction-modification system, M subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 823

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/498 (19%), Positives = 192/498 (38%), Gaps = 53/498 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L   +W++   L G    + +   +L    ++ L               +  G S 
Sbjct: 4   KKSQLYRTLWESCNALRGSMDASQYKDYVLIILFVKYLSDK---AGQPGFRLNIPEGCSF 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D  S  +             L  +   N R   +  + +F+D AK              
Sbjct: 61  RDFVSLKQ--NDKIGELMNIKLEAIKEMNARQIGDLALPNFNDPAKLGIGR-------TM 111

Query: 127 LEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +E    L  + +N   ++   +    D ++ + YE+L++ F +E       F TP +V  
Sbjct: 112 VETLSRLIGVFEN-DALDFSRNRAADDDLLGDAYEYLMKNFAAESGRRKGQFYTPAEVSR 170

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   +L   +    ++      T+YDPTCG+G  L  A+   ++        P +   GQ
Sbjct: 171 VMAKVLRIHELDRGEQ------TIYDPTCGSGSLLLRALAEASN--------PRVSICGQ 216

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E +  T A+    ML+  + +    ++      G    K +     F  C++NPPF +K 
Sbjct: 217 EKDGTTAALAKMNMLLHGISNS---EIKVGDTLGDPQFKQMGILSTFDVCVANPPFSEKE 273

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISD-GSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                      +     R+   L   +  G   FLMHL   ++   +  GR A +L    
Sbjct: 274 W-----FSPALEKDTYERWTKELLPPAKCGDYAFLMHLIASMK---SEEGRGACILPHGV 325

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E  IR+ ++    I+ I+ LP +LFF T I   + ++  +  + R+G +  
Sbjct: 326 LFRGNA---EYTIRKDIIRKRYIKGIIGLPANLFFGTGIPASIIVIDKKDRDSRKG-IFF 381

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRR----IK 479
           I+A + +         +  + +   ++I+D + +++    + RM+++     ++    + 
Sbjct: 382 IDAKEGYMK----DGAKNRLREQDIKRIVDAWEAQQPIPHYCRMVEWSEIESKKNDYNLN 437

Query: 480 VLRPLRMSFILDKTGLAR 497
           + R ++      +  +  
Sbjct: 438 IPRYIQPRDTEIQHDIEA 455


>gi|60680613|ref|YP_210757.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis NCTC 9343]
 gi|60492047|emb|CAH06809.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis NCTC 9343]
          Length = 890

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 199/554 (35%), Gaps = 79/554 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W++   L G    + +   +L    L+ +   ++                 
Sbjct: 4   KKTQLYSILWESCNILRGSMDASQYKNYVLTMLFLKYISDKVQS---------------- 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-- 124
            D + F  +    F+N                     IA  +     I  + DF  +   
Sbjct: 48  -DSDIFFDLPEGCFFNDIVALKGKPNIGEEIQKKLHVIARANPRLDHIINEADFDDSTKL 106

Query: 125 -ARLEKAGLLYKICKNF--SGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180
                K   L  +   F    ++   +   D  +  + YE+L++ F +E  +    F TP
Sbjct: 107 GTGKAKVDTLTSLISVFQRDFLDFSKNRAGDDDLIGDAYEYLMKNFAAESGKKKGQFYTP 166

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  L   L+    D           ++YDPTCG+G  L  A         + K    +
Sbjct: 167 AEVSRLMARLIGIHKDN------RPQISIYDPTCGSGSLLLRAA------AEYTKHRDGV 214

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL+  T  + V  M +   + DP  ++   I++    S      + F+Y ++NPP
Sbjct: 215 SIFGQELDGATRGMAVMNMYLHGYD-DPELEVGDTIEKPFFKSTPN-QLETFNYVVANPP 272

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFG-----PGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           F +K     +       N   GR+G     P +P I      FL+H+   +    N  GR
Sbjct: 273 FSQKGWIKGEI----KINDTFGRWGNSDNLPPIPPIGYEDYAFLLHIIKSI----NSQGR 324

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A +L +  LF    G+ E  +RR ++E   I  I++LPT+LFF T I   + I+   KT
Sbjct: 325 GACILPNGVLFR---GNEEEAVRRKIIEKRYIRGIISLPTNLFFGTGIPACIVIIDKAKT 381

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-------------- 461
              +G + +I+A   +T        +  + +   R++ D + + EN              
Sbjct: 382 STSKG-IFMIDARSGFTK----DGAKNRLREQDIRRVFDAWEALENLEANGNLDDKEETI 436

Query: 462 GKFSRMLDYRTFGYRR----IKVLR---PLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             ++R + Y      R    + V R   P+      D     +L   +  + +       
Sbjct: 437 PHYARFVPYTEITNERNDCNLNVSRYITPVDTEIQQDLYAHLKLNGGLPTKDVEEGFSYL 496

Query: 515 WLDILKPMMQQIYP 528
           W        +   P
Sbjct: 497 WRHCPTLKNELFEP 510


>gi|75909704|ref|YP_324000.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75703429|gb|ABA23105.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 694

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 114/584 (19%), Positives = 226/584 (38%), Gaps = 61/584 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT        L   +W++A+ L    D K +++   ++    L+  +       + ++++
Sbjct: 1   MTP--EELKQLEANLWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQE 58

Query: 59  YLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAI 114
           Y A  G+  +   + + +    FY       + L +     ++   I +     ++ K  
Sbjct: 59  YEALKGTRREKAIAEIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSIESYKPE 118

Query: 115 FEDFDFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +D        RL +       ++ KNFS I   P+     +   IYE+ +  F     +
Sbjct: 119 LKDTLPQDEYFRLTRTDKGIPKQLLKNFSNI---PENATGDMFGQIYEYFLGNFALSEGQ 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TPR VV L   ++                T++DP CG+GG    +   + +   
Sbjct: 176 GGGEFFTPRSVVRLMVEIIEPHQG-----------TVFDPACGSGGMFVQSAQFIEEQRK 224

Query: 233 --HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
             +      L  +GQE   ET  +    + +  L  D        ++Q +T  +D F   
Sbjct: 225 KLNQSAADDLFVYGQEKTLETVKLAKMNIAVNGLRGD--------VRQTNTYYEDPFGSF 276

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFLM 340
            +F Y L+NPPF    + +   VE + +    G         +   G   + + + L++ 
Sbjct: 277 GKFDYVLANPPFNVD-DVNLSRVEIDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWIN 335

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
             A  L+      GRAA+V+++S      A   E++IR+ L+E +LI  ++ LP+++F+ 
Sbjct: 336 LFATSLK----PKGRAALVMANSA---SDARHSEADIRQKLIEENLIYGMLTLPSNMFYT 388

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             +   LW     KT++   K+  I+A +++T +    +  R  + +Q   I  I   R 
Sbjct: 389 VTLPATLWFFDRGKTDD---KILFIDARNIFTQV---DRSHREFSTEQISNIAIISHLRR 442

Query: 461 NGKFSRMLD--YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            G+  R ++     F    +K+         + +  +  L   +   K       F    
Sbjct: 443 -GRSHRFIELINNYFQQGMVKLRENQAQVQQVSQQLITVLNDGMDDIKAREAAVDFLNLW 501

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
                 +I   G+ + +    I        + + S +F   F +
Sbjct: 502 DDLPDLEIQYQGYLDKYNFPEINIEIQNQAQQELSAAFKPFFDD 545


>gi|284023442|ref|ZP_06377840.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 132]
          Length = 424

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 104/450 (23%), Positives = 188/450 (41%), Gaps = 52/450 (11%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKI 136
             T ++ +  L +T  R    S +   S+N    +F D D  ST       E+  L+ K+
Sbjct: 10  IETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLISTRLGNNVKERTALISKV 68

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             N   +      +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D
Sbjct: 69  MVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD 128

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            L        R +YDPTCG+G  L              K   +    GQE    T+ +  
Sbjct: 129 KL--------RHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLAR 170

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             ML+  +  +     + +I+   TL    F G  F   ++NPP+  KW  D      E 
Sbjct: 171 MNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDER 225

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +G        L   S     F+ H+ + L    +  G  A+VL    LF G A   E  
Sbjct: 226 FSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGV 273

Query: 377 IRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +
Sbjct: 274 IRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGK 331

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDK 492
           N    +  ++D Q  +I+D Y  +E   K+S     +        + + R +        
Sbjct: 332 N----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAP 387

Query: 493 TGLARLEADI--TWRKLSPLHQSFWLDILK 520
             L +++ D+    ++++ + Q     + +
Sbjct: 388 IDLDQVQQDLKNIDKEIAEIEQEINAYLKE 417


>gi|239994326|ref|ZP_04714850.1| hypothetical protein AmacA2_07556 [Alteromonas macleodii ATCC
           27126]
          Length = 457

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 201/455 (44%), Gaps = 124/455 (27%)

Query: 341 HLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           HL +K+    +       GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIV+LP
Sbjct: 1   HLISKMRDTQSVDGVISNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVSLP 60

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQIL 453
           TD+F+ T IATY+W+L+N+K +ER+GKVQLI+ ++L+  +R   G KR  ++DD  + I 
Sbjct: 61  TDMFYNTGIATYVWVLTNKKKDERKGKVQLIDGSNLYGKMRKSLGSKRNQMSDDDIKTIT 120

Query: 454 DIYVSRENGKF-----------------------------SRMLDYRTFGYRRIKVLRPL 484
             +   E                                 S++ +   FGYRRI + RPL
Sbjct: 121 RAFGDFEVIDAREIDKPTEQKSNRGRQSANAKQEAPKTFASKIFNTYEFGYRRITIERPL 180

Query: 485 RMSFILDKTGLARLEA---------------------------------------DITWR 505
           R+S  +    +  L                                            + 
Sbjct: 181 RLSSQITDEAIESLRFAPKPFNMVMPRIYSEFGSAWNEENYGDLSQVQVEVRALIKAEFS 240

Query: 506 KLSPLHQSFWLDILKPMMQQIY------------------PYGWAESFVKESIKSNEAKT 547
           +L   +    L     + Q+                         +    E   +   K 
Sbjct: 241 ELKEANIKDILSSKLWLFQKALMEKVQELQSKLADVAGGRDKRSDDFNQFEIDYNKALKA 300

Query: 548 LKVKASKSFIVAFINAFGRKDPRAD----------------------PVTDVNGEWI--- 582
           L +K        F++A   K+P A+                      PV+   G+ +   
Sbjct: 301 LYIKFDAKEKKQFLDAVTTKNPDAECVVDKALKSDKKPLYGAYEYKGPVSKWKGKVVSFK 360

Query: 583 PDTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
            D +L + ENVP   S      I+ YF++EV+PHV DA+I+    DEKD EIG VGYEI 
Sbjct: 361 QDGDLRDNENVPLNPSKITSDLIESYFLKEVAPHVSDAWINADKRDEKDGEIGIVGYEIP 420

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FNR FY YQP R L++ID +L  V A+I  LL+E+
Sbjct: 421 FNRHFYVYQPPRDLREIDKDLDAVSAEILQLLQEV 455


>gi|313620399|gb|EFR91801.1| type I restriction-modification system, M subunit [Listeria innocua
           FSL S4-378]
          Length = 529

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 196/553 (35%), Gaps = 64/553 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +      +W       G    T +   I      + L        + V          + 
Sbjct: 4   STEQKTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGENWENVYSQ 63

Query: 68  D----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAK 112
           D    L    K  GY+      +          R N+     +F+           ++ +
Sbjct: 64  DSVKALNYMKKNLGYAIQPNEFFVDWKKAIDTDRFNIGMMTDTFTHFNQQIAFEAKNDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S         +A ++  + +  S  E       +  +S+IYE+L+ +F + 
Sbjct: 124 GIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYLVAQFATV 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     + TP+++ ++   +L    + + K       +++DPT G+G  L    +++ +
Sbjct: 183 LASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLTTASYMKN 236

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G       ++  +GQE +   + +    +++  +E +       NI    TL  D   G
Sbjct: 237 SGRRG----VIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTLESDWPDG 287

Query: 290 --------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   ++NPP+   W        K+ ++    R   G+   +     FL+H
Sbjct: 288 VVDGKDTPRMFDAVMANPPYSAHWNN------KDREDDPRWR-EYGVSPKTKADYAFLLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GR AI+L    LF    G+ E  IR+ L++   IEAI+  P  LF   
Sbjct: 341 CLYHL----EDNGRMAIILPHGVLFR---GASEGRIRKSLIDKHQIEAIIGFPEKLFLNA 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            I   + IL   + E     V  I+A+  +       KK+  +  +   +I+D  ++R E
Sbjct: 394 AIPVCVVILRKNRIES---DVLFIDASKEFEK----TKKQNSLRSEDVDKIVDTVINRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S +            +  P  +    ++  +  +        L+   +    D L 
Sbjct: 447 IDKYSHLATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVALNADIKKAETDFLG 506

Query: 521 PMMQQIYPYGWAE 533
            + +        E
Sbjct: 507 LLDELAVTPDTKE 519


>gi|169823773|ref|YP_001691384.1| type I restriction-modification system specificity subunit
           [Finegoldia magna ATCC 29328]
 gi|167830578|dbj|BAG07494.1| type I restriction-modification system specificity subunit
           [Finegoldia magna ATCC 29328]
          Length = 828

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 130/723 (17%), Positives = 266/723 (36%), Gaps = 99/723 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A  L G  + + +   +L     + +    +  R    E        +
Sbjct: 4   KKSELYSLLWDAANKLRGGVEPSRYKDYVLLLLFFKYVTDKYKGQRYGEFEIGEGASFDD 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
           I +                      G  +    ++  I  F   +N K    D  F++  
Sbjct: 64  IIMAK--------------------GKPDVGERVDKIIQKFLEINNLKGALPDVSFNNPE 103

Query: 125 ARLEKAGLLYKICKNFS-----GIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              +   L+ K+    +      I+   +    D ++ + YE+ + +F  E  +    F 
Sbjct: 104 ELGKGKELVDKVSGLIAIFQNPAIDFKKNRASGDDIIGDAYEYFMMKFAQESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  + + L+   D    + SP    TL+DP  G+G  L  A +   +         
Sbjct: 164 TPSEVSRVISRLIGIGD---IENSPNKKWTLHDPAAGSGSLLIRAAD---EAPVDSNGDS 217

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I+  +GQE   +T  +     ++    +      S N       + D    ++F + + N
Sbjct: 218 IVTIYGQEKYSDTAGLAKMNFILHNKGTGEVH--SDNTLSAPYYTDDFGELRKFDFIVMN 275

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF  K   D    +++       RF G G+P   +G   + +H+   L    N  G+A 
Sbjct: 276 PPFSDKDWSDGIKADEDT----YHRFDGYGIPPEKNGDYAWFLHVLKAL----NENGKAG 327

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L    LF G A   E  IR+ +L+   I+ IV LP++LF+ T I   + I+     ++
Sbjct: 328 IILPHGVLFRGNA---EETIRKEILKRKYIKGIVGLPSNLFYGTGIPACIIIIDKENADK 384

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
           R G + +I+A+D +    ++ +    + +    +I+ ++ ++ E   +SR + Y+     
Sbjct: 385 REG-LFMIDASDGFKKDGDKNR----LREQDIEKIVQVFTNKTEIKGYSRFIAYKEIIED 439

Query: 477 ---RIKVLRPL-RMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPYGW 531
               + V R + +++  L +   + L   I  + +  + + + +   L+  + +      
Sbjct: 440 NNANLNVPRYISKINKNLPQNINSHLNGGIPEKDIDSMERLWNISSELRNKIFEERENAN 499

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAF-GRKDPRADPVTDVNGEWIPDTNLTE- 589
                 E     +      K  K      I+ F   K      + +++   IP   + E 
Sbjct: 500 VYDLKVEPDSIEDLIFEDEKIKKVIQEETIDIFNTWKQQSETILENIDSTIIPKKLIREL 559

Query: 590 -------YENVPYLESIQDY----------FVREV-----SPHVPDAYIDKIFIDEKDKE 627
                  YE    L++   Y             +V     S +   A ID+ +  +K K+
Sbjct: 560 GFSILKAYEKSKLLDNYDAYDFLLNYWNEKMQDDVYLIKASGYEAGAEIDRKYGKKKIKD 619

Query: 628 IGRVGYEINFNRFF----------------YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              +  EI   + F                Y      ++  I++ +  ++ ++  + EE 
Sbjct: 620 EQGIEIEIEDKKKFKSFDGLLIPKEIIETEYFNDELEEISAINSTISEIDEKMNEIFEEN 679

Query: 672 ATE 674
           + E
Sbjct: 680 SGE 682


>gi|320143287|gb|EFW35074.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 394

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 178/425 (41%), Gaps = 50/425 (11%)

Query: 105 ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               ++   +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 4   EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 63

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L 
Sbjct: 64  LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL 115

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +  +     + +I+   T
Sbjct: 116 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDT 160

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 161 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQH 215

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 216 MVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 268

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  +E
Sbjct: 269 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKE 322

Query: 461 N-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFW 515
              K+S     +        + + R +          L +++ D+    ++++ + Q   
Sbjct: 323 TIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEIN 382

Query: 516 LDILK 520
             + +
Sbjct: 383 AYLKE 387


>gi|321310237|ref|YP_004192566.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
 gi|319802081|emb|CBY92727.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
          Length = 523

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/537 (20%), Positives = 198/537 (36%), Gaps = 72/537 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREK 58
           M         L   IWK+ EDL G     +    I      R +  +      +S   + 
Sbjct: 1   MFNVREERRELYRSIWKSCEDLRGSMDGYEMKNYIFVMMFYRFMSESFVYWFSKSEWDDG 60

Query: 59  YLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105
              F  +N+  E  +            F   S+   + L       +    I        
Sbjct: 61  NKDFDYANLSDEEAIPWKEDAVKKKGFFMLPSQLFGNVLKKVIEDQHFAEEINTCLPKIF 120

Query: 106 ----------SFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHP-DTVP 151
                     S  ++ K +     +         LE+   + ++ K   G +        
Sbjct: 121 RAVENSSIGFSSEEDIKGLLTSVSWDDVKLGTVVLERNKKIVEVMKAIGGSKFDFISEHE 180

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+   YEHL+ ++ S   +   +F TP +V  L T + +        +   +   +YD
Sbjct: 181 IDVLGEAYEHLMEQYASTSGKKGGEFYTPPEVSRLLTKIAV-------GDKTYISGGVYD 233

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L   +N +                GQE    T+ +C   M +  +  +    
Sbjct: 234 PACGSGSLLLKCVNLLGAKNVSEMC-------GQEKNMTTYNLCRMNMFLHGVNYNK--- 283

Query: 272 LSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGL 328
              +I+ G T        + KRF   +SNPP+  KW  + D  +  + +  ++G     L
Sbjct: 284 --FDIRHGDTLEYPDPARSKKRFEIIVSNPPYSAKWAGEDDVKLLTDPRFEQVG----AL 337

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  + L    +  G+A IV ++  L        E  IR+WL+  + IE
Sbjct: 338 APKSAADFAFILHCLHLL----SSTGKAVIVCATGVLTRL---GKEKHIRKWLISQNYIE 390

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +++ L   LF+ T ++  + ILS  K++     V  ++AT+++   RN+ +    ++D+ 
Sbjct: 391 SVIYLAPKLFYETGVSVVIMILSKSKSDS---NVLFVDATNIFIKDRNQNR----LSDEN 443

Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFG--YRRIKVLRPLRMSFILDKTGLARLEADI 502
             QIL IY  R N  F +++   +        + +   +      +   +A L  DI
Sbjct: 444 IAQILKIYRERVNVPFVAKVASNKEIEGKGYDMGMKAYIESPVKTEVVDIAALNKDI 500


>gi|330994842|ref|ZP_08318764.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758103|gb|EGG74625.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 546

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 149/506 (29%), Positives = 228/506 (45%), Gaps = 86/506 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW+ AE L G     ++G VIL FT+LRRLE                             
Sbjct: 11  IWRIAELLRGVVPPGEYGPVILAFTVLRRLE----------------------------- 41

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
               +         +     +    LE+ +       + +    +      RL +AG+L 
Sbjct: 42  ---LARGRPVSALAAVASVADPLARLETLLGRLPAPVRGMMAQMEMGPLATRLARAGVLG 98

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++  +F+ ++L P     + M+ ++E L+R F  +  +      TP ++  L T L+  P
Sbjct: 99  RVAAHFAALDLSPALYGTQAMARLFEELVRHF--DAGQATGAHYTPPEIGDLMTDLVFAP 156

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
           D A  + +      LYDP  GTG  L  A + +A  G        +   GQE+     A+
Sbjct: 157 DAAGTRHA------LYDPAAGTGVLLGRAADRLAGRG------VAVDLFGQEISARACAI 204

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           C A ML+R            +I  G+TL+ D    +RF   L+NPPFG  W   +  V+ 
Sbjct: 205 CQADMLLRG-------RNPAHILPGNTLAVDHHASRRFARMLANPPFGVDWRAIRPLVQA 257

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           EH  G  GRF  GLP+++DGSMLF++HL  ++  P  GG R  +V   + L  G A SGE
Sbjct: 258 EHATGSAGRFAAGLPRVADGSMLFMLHLLARMRAPARGGARVGMVTHGAALAGGGADSGE 317

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           S IRR L+++DLI+ ++ALP D+F  T IATY+WIL NRK   R+G V+L++AT LW   
Sbjct: 318 SAIRRHLVDHDLIDTVIALPGDMFVNTGIATYVWILDNRKPAGRQGMVRLVDATGLWRRC 377

Query: 435 -RNEGKKRRIINDDQRRQILDIYVSRENGK------------------------------ 463
            R+ G+KRR +       ++   ++  +                                
Sbjct: 378 PRSSGEKRREMTQAHIATVVQAALAGTDMDLIVQPGADGAPARWQAVACDGPEGQDGTGC 437

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMS 487
              SR++  R F YR + V R +R +
Sbjct: 438 VPLSRIVPGRDFLYRSVSVERRVREA 463



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 29/233 (12%)

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-------- 495
           + D       D++V+     +  +LD R    R         M  ++D TGL        
Sbjct: 329 LIDTVIALPGDMFVNTGIATYVWILDNRKPAGR-------QGMVRLVDATGLWRRCPRSS 381

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                ++T   ++ + Q+        ++ Q    G    +   +    E +        S
Sbjct: 382 GEKRREMTQAHIATVVQAALAGTDMDLIVQPGADGAPARWQAVACDGPEGQDGTGCVPLS 441

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
            IV   +   R       V +                +   +    +F R + P  P A 
Sbjct: 442 RIVPGRDFLYRSVSVERRVREAG------AAARTTFTMDMADDPDSWFARMILPFDPTAK 495

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           +D              G  I+F R+F +  P R L  I AEL+   A++A L+
Sbjct: 496 LDMARCA--------TGCAISFARYFSRPAPPRPLAAIRAELRRSMARLAALM 540


>gi|294155919|ref|YP_003560303.1| type I restriction-modification system, methyltransferase
           [Mycoplasma crocodyli MP145]
 gi|291600214|gb|ADE19710.1| type I restriction-modification system, methyltransferase
           [Mycoplasma crocodyli MP145]
          Length = 523

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/542 (18%), Positives = 203/542 (37%), Gaps = 63/542 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGSNIDL 69
           L N +W  A  + G    ++F +V L     R +     +       + Y      +I++
Sbjct: 13  LHNKLWDLANKVRGKINASEFQQVFLGILFYRFISEYFVDKVEENGLKDYSNKNDDDIEV 72

Query: 70  ESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
               K        F   S   ++     +   N+   I    ++  +     D  + +  
Sbjct: 73  LKMKKDLPDLIGFFIKPSHLFVNLSKDVHLNENINIDINDIFNSIVSSANINDSENILEG 132

Query: 127 ---------------------LEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLI 163
                                 +K  ++ K     + I+     D        + YE+LI
Sbjct: 133 TFPNFNNLNFLNINNNNENQLKKKNNIITKTILTVAEIDFGSKFDDHSIDTFGDAYEYLI 192

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP++V      + L        ++   I ++YDPTCG+G  L   
Sbjct: 193 GMYAASGGKSGGEFFTPQEVSKFLANVTL------VYKNSKDIYSVYDPTCGSGSLLLKF 246

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +          P L   GQE  P T ++    ++I  +E D       +++ G TL+
Sbjct: 247 KKIL--------NNPYLHFSGQESNPTTFSLSKMNLIIHGVEFDKI-----DLKCGDTLN 293

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             L   K+F   +SNPP+   W   +D  E   ++ E     P L   S+  + F++H  
Sbjct: 294 DPLHLEKKFDVVVSNPPYSIAW---EDYNETSIRSDERFNIVPTLMPKSNSDLGFVLHSL 350

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L    +  G AAIV      +       E  IR++L+EN+ IEAI+ +P ++FF T+I
Sbjct: 351 YSL----DKKGVAAIVCFPGMFYRD--NESEVNIRKYLVENNFIEAIIVMPNNMFFGTSI 404

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
           +  + +L+  K   +   +  ++A+  +        K+  +++     +L I   R++  
Sbjct: 405 SVNIMVLNKNK---QTKDILFVDASSHFYK----DGKKNKMSEQNIENVLKIVKDRKDIE 457

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
             S+ +    F  + + +           K  +  +  +    +++  +Q     I K +
Sbjct: 458 NVSKPVANEFFLDKSVNLSPDRFFKKEEVKEEIDIINLNKQLNEITSKNQKLREQIKKLI 517

Query: 523 MQ 524
            +
Sbjct: 518 FE 519


>gi|323438363|gb|EGA96135.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 386

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 178/425 (41%), Gaps = 50/425 (11%)

Query: 105 ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               ++   +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 2   EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFIHSDMEIDMLGDAYEF 61

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L 
Sbjct: 62  LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLL 113

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +  +     + +I+   T
Sbjct: 114 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDT 158

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 159 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQH 213

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 214 MVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 266

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I++ Y  +E
Sbjct: 267 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIINTYKRKE 320

Query: 461 N-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFW 515
              K+S     +        + + R +          L +++ D+    ++++ + Q   
Sbjct: 321 TIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEIN 380

Query: 516 LDILK 520
             + +
Sbjct: 381 AYLKE 385


>gi|167855556|ref|ZP_02478317.1| putative type I modification enzyme [Haemophilus parasuis 29755]
 gi|167853302|gb|EDS24555.1| putative type I modification enzyme [Haemophilus parasuis 29755]
          Length = 443

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 164/437 (37%), Gaps = 52/437 (11%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
           G  N  ++    I   +   K + +          +    +      NF+   L    + 
Sbjct: 30  GIANLIDDAFDAIEQDNPKLKNVIQRISPYKVEESILLGLIDLFSDTNFTRPTLDGKQIS 89

Query: 152 ---DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++ ++YE+ + +F     +    + TP+ +V L   +L                 
Sbjct: 90  LAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKG-----------R 138

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+GGF       + +   H      +   GQE  P T  +    M IR +E D 
Sbjct: 139 IYDPAMGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFD- 194

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPG 327
                       T S      K+  + ++NPPF  K W  +  A +         R+  G
Sbjct: 195 -----FGKGNADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQD--------PRWQYG 241

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   + +  +L H+   L    +  GR A++L++  +      + E EIR+ +L+ DL+
Sbjct: 242 IPPEGNANFAWLQHMIYHL----SPNGRMALLLANGSM--SSNTNNEGEIRKNILKADLV 295

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ALP+ LF  T I   +WIL+  K   R+G+V  I+A  L      + +  R    D
Sbjct: 296 EAMIALPSQLFTNTQIPACIWILNKNKA--RKGEVLFIDARQLGYM---KDRVLRDFTAD 350

Query: 448 QRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              ++ D Y S +          F               VL P R     ++       A
Sbjct: 351 DIAKVADTYHSWQQSADYQNIPAFCYTASLDEIAQNDF-VLTPGRYVGAAEQEDDGVPFA 409

Query: 501 DITWRKLSPLHQSFWLD 517
           +   ++L+ L Q  +  
Sbjct: 410 EK-MQELTALLQQQFKQ 425


>gi|296121477|ref|YP_003629255.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
 gi|296013817|gb|ADG67056.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
          Length = 533

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 193/519 (37%), Gaps = 58/519 (11%)

Query: 8   AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              +   +W +A++L  +   K +++   +L    LR  +         +   +    GS
Sbjct: 5   HTEIERRLWASADELRANSKLKSSEYSVPVLGLIFLRYADHRFTQAERELNVLFAKKSGS 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSST 123
              +      A    +   E   S L       ++   I +     +   E+       T
Sbjct: 65  RRAIGKEDFQAKGVMFLPPESRFSALLELPEGEDIGKAITTAMKAIEKENEELKGILPKT 124

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +++E   L+  + KN S I   P          IYE+ +  F     +   +F TP  +
Sbjct: 125 YSKIENTTLVS-LLKNLSSI---PVDAEGDTFGKIYEYFLGNFARAEGQKGGEFFTPTSL 180

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++           P     +YDP CG+GG    + + +     H+     +  +
Sbjct: 181 VKLIVEII----------QPYHG-RIYDPACGSGGMFVQSADFIKAH--HNNPAVEISIY 227

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302
           GQE   ET  +C   + +  L  D         +QG+T  +D      +F + ++NPPF 
Sbjct: 228 GQERVDETRQLCQMNLAVHGLSGDI--------RQGNTYYEDPHESVGKFDFVMANPPFN 279

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  D V+KE K  E  RF  G+P+  + + L++    + L    N  GRA  V+++
Sbjct: 280 V------DKVDKE-KLKEDPRFPLGMPRADNANYLWIELFYSSL----NATGRAGFVMAN 328

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE------ 416
           S      A   E EIR+ LL+  +++ ++A+  + F+   +   LW L   K+       
Sbjct: 329 SA---ADARQSEMEIRQKLLKAHVVDVMIAIGPNFFYTVTLPCTLWFLDKGKSNLSGKGS 385

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           +R+ +V  I+A  ++  +    +K      +    I+ +Y   E  +F+   D    G  
Sbjct: 386 QRKEQVLFIDARHIFRQVDRAHRKFSPKQLEYIANIVRLYRG-EQPEFTAGDDLEFPGV- 443

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                    +     K   A +        L  +    W
Sbjct: 444 ------EPDLKATFPKLKYADVAGLCKIATLQEIEAQGW 476


>gi|258450492|ref|ZP_05698580.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282929846|ref|ZP_06336981.1| type I restriction enzyme M protein [Staphylococcus aureus A9765]
 gi|257861797|gb|EEV84594.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282591805|gb|EFB96865.1| type I restriction enzyme M protein [Staphylococcus aureus A9765]
          Length = 382

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/416 (23%), Positives = 176/416 (42%), Gaps = 50/416 (12%)

Query: 114 IFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +F D D SST       E+  L+ K+  N   +      +   ++ + YE LI RF +  
Sbjct: 1   MFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATA 60

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L          
Sbjct: 61  GKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG------ 106

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K   +    GQE    T+ +    ML+  +  +     + +I+   TL    F G 
Sbjct: 107 ----KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGN 157

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPP+  KW  D      E  +G        L   S     F+ H+ + L    
Sbjct: 158 TFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL---- 208

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWI 409
           +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +
Sbjct: 209 DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILV 265

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
              +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   K+S   
Sbjct: 266 F--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSA 319

Query: 469 DYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
             +        + + R +          L +++ D+    ++++ + Q     + +
Sbjct: 320 TLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 375


>gi|329123370|ref|ZP_08251934.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116]
 gi|327470952|gb|EGF16407.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116]
          Length = 443

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 162/430 (37%), Gaps = 50/430 (11%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRV 154
           ++    I   ++  K + +     +      +  ++     +F+    + + V      +
Sbjct: 36  DDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEPVHLGAKDI 95

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE+ + RF     +    + TP+ +V L   +L           P     +YDP  
Sbjct: 96  LGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG-RMYDPAM 144

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D       
Sbjct: 145 GSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYD------F 195

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                 + ++     K+  + ++NPPF       +  V+         R+  G P   + 
Sbjct: 196 GKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLVDD-------PRWAYGTPPKGNA 248

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL+E +VALP
Sbjct: 249 NFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADLVECMVALP 302

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    D   +I D
Sbjct: 303 GQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTADDIAKIAD 357

Query: 455 IYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              + +          F +             VL P R     ++       A+   + L
Sbjct: 358 TLHTWQKSDGYENQAAFCKSATLEEIKDNDF-VLTPGRYVGTAEQEDDGVPFAEK-MQNL 415

Query: 508 SPLHQSFWLD 517
           + L +  +  
Sbjct: 416 TALLKEQFAK 425


>gi|325981135|ref|YP_004293537.1| N-6 DNA methylase [Nitrosomonas sp. AL212]
 gi|325530654|gb|ADZ25375.1| N-6 DNA methylase [Nitrosomonas sp. AL212]
          Length = 772

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 109/568 (19%), Positives = 211/568 (37%), Gaps = 64/568 (11%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
               L   +W  A+ L    D K +++   +L    L+  +        A+  +Y    G
Sbjct: 5   QLKKLEADLWSAADTLRANSDLKSSEYATPVLGLIFLKFADNNYRRHEKAILSEYQQLQG 64

Query: 65  SNID-LESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFE 116
           +  +   S + +    FY         L                   I  +    + +  
Sbjct: 65  TRREKPVSEIAIEQCGFYLPDHTRYDYLLNLPEEKDIAKALKEAMKAIEEYKPELEGVLP 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  + + R +K  +  ++ + F+ I   P      +   IYE+ +  F     +   +
Sbjct: 125 K-DEYAALTRTDK-TIPQQLLRTFADI---PANATGDLFGQIYEYFLSEFARSEGQKGGE 179

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR VV L   ++                 ++DP CG+GG    +   +A   +  K 
Sbjct: 180 FFTPRSVVRLMVEIIEPH-----------GGKVFDPACGSGGMFVQSAQFIAAHRNELKG 228

Query: 237 PPI-LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294
               +   GQE   +T  +    + +  L  +         +Q +T  +D +   ++F Y
Sbjct: 229 ADSGVYVCGQEKTQDTVKLAKMNLAVNGLRGEI--------KQANTYYEDPYDSFEQFDY 280

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFLMHLANK 345
            L+NPPF    +    +VEK+ +    G         +   G   + +G+ L++   A  
Sbjct: 281 VLANPPFNVD-DVSLSSVEKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFATS 339

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GRAA+V+++S      A   E++IR+ L+E +LI A++ LP+++F+   +  
Sbjct: 340 LKPQ----GRAALVMANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTLPA 392

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI--LDIYVSRENGK 463
            LW     K   R  ++  I+A +++T I    +  R  + +  + I  +      +  K
Sbjct: 393 TLWFFDKAK---RGDRILFIDARNIFTQI---DRAHREFSAEHIQNIALISHLHKGQREK 446

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           F R++D R F     +++        +    L  L+     + +S L Q +    L  + 
Sbjct: 447 FIRLID-RYFAAGMERLIENNEKIEPVCAQLLDVLDDAGGKQAVSELLQHW--AELDKLK 503

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVK 551
                Y     FV            K+ 
Sbjct: 504 THYQRYIQQNGFVTPRNSEESYVHDKIS 531


>gi|291320525|ref|YP_003515789.1| type I restriction modification system modification (methylase)
           protein [Mycoplasma agalactiae]
 gi|290752860|emb|CBH40835.1| Modification (Methylase) protein of type Irestriction modification
           system [Mycoplasma agalactiae]
          Length = 892

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 132/714 (18%), Positives = 257/714 (35%), Gaps = 98/714 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-------------- 52
           +   L + IW  A  L    +  ++   +L   L + L                      
Sbjct: 6   TKEKLGSKIWAAANKLRDKLEAYEYKDYVLGLILYKFLCEKQTDYLIKNWVSKDQLKYLD 65

Query: 53  ----------------SAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGST 94
                             +   Y  F  +  +   E+   +     +     + S+    
Sbjct: 66  SKYLDNMPNFSAFYTGDNLEADYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSFNIQ 125

Query: 95  NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           N +    ++  S +D  K++F+D    F   +++L  E       I      I   P T 
Sbjct: 126 NFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGAETNEQTKVISDLLDIINDIPSTN 185

Query: 151 PD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            D  V+  IYE+LI RF S   + A +F TP +V  L + ++                 +
Sbjct: 186 QDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKD------REFIKV 239

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L           S +     +  + QEL+ E   +    ++++ +     
Sbjct: 240 YDPTSGSGSLLLTIGQEFKKYNSGN---SPVSYYAQELKAEVFNLTRMNLIMKNISPTEI 296

Query: 270 RDLSKNIQQGSTLSKDLFTGKRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              + +  +      +      +        +SNPP+ + W  +K  ++  +        
Sbjct: 297 HARNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKHTLDPRY-------I 349

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+   +     FL+H            G  AIVL    LF G +   E +IR+ L++ 
Sbjct: 350 EYGIAPKTKADYAFLLHDLYH----VQPDGIMAIVLPHGVLFRGNS---EGQIRKTLIQK 402

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+        K    
Sbjct: 403 QQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVK----EGKNNKF 455

Query: 445 NDDQRRQILDIYVSR-ENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLARL-EA 500
           +    ++I D+  +R E   FSR +  D        + + R +      ++  L  L   
Sbjct: 456 SKSHIKKIADVVNNRIEIENFSRRVLLDEIVANDYNLNISRYIDNFKKQEQHDLYSLMHG 515

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
            I+  +L  L   F L     +  +++       +  +  K +   T+K   + S     
Sbjct: 516 GISKEELEKLDNFFGLFT--GLKDKLFKINANNYYELKVAKEDINSTIKGDWNVSE---- 569

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYEN-VPYLESIQDYFVREV-SPHVPDAY-ID 617
                  D +          ++      E+ N V + E++ DY    + S  + DAY I 
Sbjct: 570 --YINSFDKKGTKFLKFFKNFVTSVEQFEHINLVEFEEALTDYIFENMDSIPLVDAYDIY 627

Query: 618 KIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK----LQDI-DAELKGVEAQIAT 666
           +IF++  D     +  E+  +++   YQ S      L +I + E++ +E +  +
Sbjct: 628 QIFVNNFDLIKDDI--EL-ISKY---YQESEDKTNALSEILNGEIEKIEGKSKS 675


>gi|229021766|ref|ZP_04178344.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1272]
 gi|228739513|gb|EEL89931.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1272]
          Length = 402

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 173/440 (39%), Gaps = 46/440 (10%)

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH 146
            L +        +  A   ++ + +F+D D +S+        ++ L+ K+  N + I   
Sbjct: 1   MLQNGVKAIEASTMGADSQEDFENLFDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFL 60

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D V   V+ + YE++I +F +   + A +F TP+ V  +   ++      +        
Sbjct: 61  QDDVEIDVLGDAYEYMISQFAANAGKKAGEFYTPQQVSRILAKIVTAGKTEIKD------ 114

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YD TCG+G  L                  +   +GQE    T+ +    ML+  +  
Sbjct: 115 --VYDGTCGSGSLLLRVGKEAK----------VYNYYGQEKVSTTYNLARMNMLLHDIPY 162

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   +I+   TL +     KRF   ++NPP+  KW  D    + E  +        
Sbjct: 163 Q-----RFDIKNADTLEEPQHLDKRFEAIVANPPYSAKWSADDKFQDDERFSNYAK---- 213

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-D 385
            L   S     F+ H  + L       G  A+VL    LF G A   E  IR++L+E  +
Sbjct: 214 -LAPKSKADFAFVQHFIHHL----ADNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKN 265

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++A++ LP ++FF T+I T + +L  +K  +    V  I+A++ +   +N    +  + 
Sbjct: 266 YLDAVIGLPANIFFGTSIPTCILVL--KKCRKHDDNVIFIDASNEFEKGKN----QNHLA 319

Query: 446 DDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           D+   +I++ Y+SRE   K+S              +  P  +    ++  +   E     
Sbjct: 320 DEHVEKIVNTYLSRETFDKYSYAATLDEIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQL 379

Query: 505 RKLSPLHQSFWLDILKPMMQ 524
             +         ++     +
Sbjct: 380 EAIDEEIAKVDEELAAYFKE 399


>gi|119477797|ref|ZP_01617920.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143]
 gi|119448958|gb|EAW30199.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143]
          Length = 707

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 114/642 (17%), Positives = 227/642 (35%), Gaps = 71/642 (11%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T     L   +W  A++L    D K T++   +L    L+  +        A+ +++  
Sbjct: 2   NTEQLKQLEKDLWSAADNLRANSDLKSTEYATPVLGLIFLKFADNNYARAEQAINKEFAK 61

Query: 62  FGGSNIDLE-SFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKA 113
             G+  +     + +    FY         L        +          I  +      
Sbjct: 62  LTGTRREKPIDEIAIEKCGFYLPPHARYDYLLNLPEQEDAAKKIKEAMLDIEKYKPELDG 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    D    + R +K  +  ++ KNFS I   P      ++  IYE+ +  F     +G
Sbjct: 122 VLPK-DEYVPLTRTDK-TIPAQLLKNFSNI---PRDASGDILGKIYEYFLGNFALAEGQG 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  VV L   ++                T+YDP CG+GG    + ++V      
Sbjct: 177 GGQFFTPTSVVKLMVEIIEPYKG-----------TVYDPACGSGGMFVQSQHYVEQHRDE 225

Query: 234 HK------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            K          L  +GQE   +T  +    + +  L  +         +Q ++ S+D  
Sbjct: 226 LKALGELHEEDQLYVYGQEKTLDTVKLAKMNLAVNGLRGEI--------KQANSYSEDPH 277

Query: 288 TG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSML 337
            G  +F + ++NPPF    +     VE + +    G             G   + + + L
Sbjct: 278 NGFGKFDFVMANPPFNVD-DVPIATVEADTRFNTYGIPRKKTKAKAADKGKETVPNANYL 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++   A  L+      GRAA+V+++S      A   E++IR+ L+EN+LI  ++ LP+++
Sbjct: 337 WISLFATSLKDNSKDSGRAALVMANSA---SDARHSEADIRQSLIENNLIYGMLTLPSNM 393

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+   +   LW     K ++   K+  I+A + +T I    ++           I  ++ 
Sbjct: 394 FYTVTLPATLWFFDKNKQDD---KLLFIDARNTFTQIDRAHREFNEQQIHNIAIISKLHK 450

Query: 458 -SRENGKFSRMLDYRTFGYRR--------IKVLRPLRMSFILDKTG-LARLEADITWRKL 507
            +R+   F R++D       +        I  +    +  + D+ G LA  +    W+ L
Sbjct: 451 GNRQ--AFVRLVDSYFSQGIQQLSENQQHIAPISNQLLDVLEDQNGKLAVGDLVKQWKGL 508

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             L  +     ++  + +           K   K  +       A  + +        + 
Sbjct: 509 KKLQTAVDNYFIEADVYKGKDDFNVSEKNKLQHKLRKKFDPFFDALHAGLKQLDKIVRQH 568

Query: 568 DPRAD-PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS 608
           +   +        +        + E     E+++    +EV 
Sbjct: 569 EKEVEQKKAKAASDGKSKRFTADREIKKLKEALEL-LHKEVK 609


>gi|73670137|ref|YP_306152.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72397299|gb|AAZ71572.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 508

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 93/468 (19%), Positives = 185/468 (39%), Gaps = 51/468 (10%)

Query: 6   GSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           G+     N +W  A +L  +   K +++   +L    LR  E         ++ +     
Sbjct: 3   GNNNETENRLWDVANELRANSGLKASEYSVPVLGLIFLRYAEFKFAKAEKELKLELENES 62

Query: 64  GSNIDLESFVKV---AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            S    +   K+   A    Y   +   S L +     N+   +    +  +A  E+ + 
Sbjct: 63  SSRRRKKEISKIDFQAKGVLYLPKKARYSYLLNLPESENIGKAVNDAMEAIEA--ENPEL 120

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + T+ +   +     +       +L P+ +       IYE+ + +F     +   +F TP
Sbjct: 121 TDTLPKNYTSFENDLLVALLKAFKLPPE-IKGDAFGKIYEYFLGKFAMAEGQKGGEFFTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V L   ++                 + DP CG+GG    + + V     H +    +
Sbjct: 180 TSLVRLIVEIIEPY-----------HGRILDPACGSGGMFVQSAHFVE--NQHKEASSEI 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299
             +GQE   +T  +C   + +  L  D         ++G+T  +D+      F + ++NP
Sbjct: 227 SIYGQEKVADTVRLCKMNLAVHGLSGDI--------KEGNTYYEDIHNSVDAFDFVMANP 278

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K       V+ E   G+  R   G P   + + L++ H  + L    N  GRA  V
Sbjct: 279 PFNVK------KVDFEKVKGD-KRVPLGTPSTDNANYLWIQHFWSTL----NEKGRAGFV 327

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ER 418
           +++S      A   E+EIR+ L+E + ++ +V++ ++ F+   +   LW L   K    R
Sbjct: 328 MANSA---SDARGTEAEIRKQLIEGNAVDVMVSIGSNFFYTVTLPCTLWFLDKGKARTSR 384

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENGK 463
           + K+  I+A +++T +    +  R    +Q  +   I+  Y  +E  +
Sbjct: 385 KDKILFIDAREIFTQV---DRAHREFTGEQIEKLAGIVRSYREKEGSE 429


>gi|332983357|ref|YP_004464798.1| N-6 DNA methylase [Mahella australiensis 50-1 BON]
 gi|332701035|gb|AEE97976.1| N-6 DNA methylase [Mahella australiensis 50-1 BON]
          Length = 894

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 99/520 (19%), Positives = 195/520 (37%), Gaps = 58/520 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L   + ++   L G  +   +   +L     + +                      
Sbjct: 2   KKSELYPLLLESCNKLRGGVEPARYKDYVLVLLFFKYVSDRY----------------KG 45

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTI 124
                F    G SF +     +   G ++    ++  I  F ++ K      D  F++  
Sbjct: 46  QPFAEFKISDGASFDDL----IKAKGKSDVGERVDKIIQKFLEDNKLQGALPDVSFNNPD 101

Query: 125 ARLEKAGLLYKICKNFS-----GIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                  L+ K+    +      I+   +    D ++ + YE+ + +F  E  +    F 
Sbjct: 102 ELGYGKELVDKVSGLIAVFQNPAIDFKNNRASGDDIIGDAYEYFMMKFAQESGKSKGQFY 161

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   L+   +    K+ P    TLYDP  G+G  L  A +   +         
Sbjct: 162 TPSEVSRIIARLIGIGN---IKQMPTKKWTLYDPAAGSGSLLIRAAD---EAPVDENGDS 215

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I+   GQE +  T  +    +++             N       + D    K+F + + N
Sbjct: 216 IVTIFGQEKDIATAGLARMNLILH--HKGTGEIKKGNTLVSPAFTDDFGELKKFDFIVMN 273

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF  K W     A E ++K  +    G G+P   +G   + +H+   L    +  G+A 
Sbjct: 274 PPFSDKSWSDGIKATEDKYKRFD----GYGIPPEKNGDYAWFLHVLKSL----DDNGKAG 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I++    LF G +   E  IR  +L    I+ I++LP +LF+ T I   + I+     + 
Sbjct: 326 IIMPHGILFRGNS---EETIRIAILRKRYIKGIISLPANLFYGTGIPACIVIIDKENADT 382

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476
           R G + LI+A+  +    N+ +    + +    +I+  ++++E    +SR + Y     +
Sbjct: 383 RDG-IFLIDASRGFKKDGNKNR----LREQDIEKIVRTFINQEEIEGYSRFVKYSDILEK 437

Query: 477 ---RIKVLRPLR-MSFILDKTGLARLEADITWRKLSPLHQ 512
               + V R ++ +   L +   A L+  I    +  L +
Sbjct: 438 NAGNLNVSRYIQKIDDTLPQNIAAHLKGGIPGTDIDSLKR 477


>gi|148377836|ref|YP_001256712.1| modification (methylase) protein of type irestriction-modification
           system HsdM [Mycoplasma agalactiae PG2]
 gi|148291882|emb|CAL59273.1| Modification (Methylase) protein of type Irestriction modification
           system HsdM [Mycoplasma agalactiae PG2]
          Length = 892

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/710 (18%), Positives = 261/710 (36%), Gaps = 95/710 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +   L + IW  A  L    +  ++   +L   L + L         ++ V ++ L +  
Sbjct: 6   TKEKLGSKIWAAANHLRDKLEAYEYKDYVLGLILYKFLCEKQSNYLIKNWVTKEQLKYLD 65

Query: 65  S------------------NIDLESFVKVAGYSF------------YNTSEYSLSTLGST 94
           S                    D E F                    +     + S+    
Sbjct: 66  SKYLDNISNFSAFYTGNNLESDYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSFNIQ 125

Query: 95  NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           + +    ++  S +D  K++F+D    F   +++L  +       I      I   P T 
Sbjct: 126 DFQQAFNNFNNSINDAHKSLFKDLFVKFERDLSKLGSDTNEQTKVISSLLDIINDIPSTN 185

Query: 151 PD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            D  V+  IYE+LI RF S   + A +F TP +V  L + ++              +  +
Sbjct: 186 QDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAHHLKD------RKVIKV 239

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L           S +     +  + QEL+ E   +    ++++ +     
Sbjct: 240 YDPTSGSGSLLLTIGQEFKKYNSGN---SPVSYYAQELKAEVFNLTRMNLIMKNISPTEI 296

Query: 270 RDLSKNIQQGSTLSKDLFTGKRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              + +  +      +      +        +SNPP+ +KW  +K  ++  +        
Sbjct: 297 HARNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDPRY-------I 349

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+   +     FL+H            G   IVL    LF G +   E +IR+ L++ 
Sbjct: 350 EYGIAPKTKADYAFLLHDLYH----VQPDGIITIVLPHGVLFRGNS---EGQIRKTLIQK 402

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+        K    
Sbjct: 403 QQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVK----EGKNNKF 455

Query: 445 NDDQRRQILDIYVSR-ENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLARL-EA 500
           +    ++I D+  +R E   FSR +  D        + + R +      ++  L  L   
Sbjct: 456 SKSHIKKIADVVNNRIEIENFSRRVLLDEIVANDYNLNISRYIDNFKKQEQHDLYSLMHG 515

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
            I+  +L+ L   F  D+   +  +++       +  +  K +   T+K + + S     
Sbjct: 516 GISKEELAKLDNFF--DLFTGLKGKLFKINANNYYELKVAKEDINSTIKGEWNVSE---- 569

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYEN-VPYLESIQDYFVREV-SPHVPDAY-ID 617
                  D ++         ++      E+ N V    ++ DY    + S  + DAY I 
Sbjct: 570 --YINSFDKKSTKFLKFFKNFVTSVEQIEHINLVELESALTDYIFENMDSIPLVDAYDIY 627

Query: 618 KIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
           +IF++  D     +  E+  +++   YQ S    ++ +E+  +  +I  L
Sbjct: 628 QIFVNNFDLIKDDI--EL-ISKY---YQESEDKSNVLSEI--LNGEIEKL 669


>gi|322420369|ref|YP_004199592.1| adenine-specific DNA-methyltransferase [Geobacter sp. M18]
 gi|320126756|gb|ADW14316.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacter
           sp. M18]
          Length = 539

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 168/451 (37%), Gaps = 52/451 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           +E   +  +L   +W  A+ L  +   K  ++   IL    LR  E      R  +    
Sbjct: 7   SEKDTATTTLEKRLWDAADQLRANSGLKPQEYSGPILGLIFLRFAEVRFAVQRGKLEAAG 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIF 115
            +    +   +     A    Y   E     L     + +    + + +     + +   
Sbjct: 67  ASSRRGSRVDDPAAYHAEGILYLPPEARFDYLLTLPEAADIGAKVNTAMREIEKHNQQ-- 124

Query: 116 EDFDFSSTIARLEK---AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                SS + +      + LL ++ K  S I   P ++       IYE+ +  F     +
Sbjct: 125 ----LSSVLPKTYNLFTSTLLKELLKKVSEI---PASLDYDAFGRIYEYFLGAFAMTEGQ 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP  +V L   ++                 + DP CG+GG    +   VA+   
Sbjct: 178 GGGEFYTPSSIVKLLAEVIEPF-----------HGRILDPACGSGGMFVQSARFVAEH-- 224

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  L   G E   ET  +C   + +  LE D R   + N               +F
Sbjct: 225 QKNPAAELAICGVEKTDETGRLCRLNLAVHGLEGDIRHGGNVNSYYDD----PHSATGQF 280

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELP 349
            + L+NPPF        +AV+KE     +G   RF  GLP+  + + L++    + L   
Sbjct: 281 DFVLANPPFNV------NAVDKERLKDMVGAGRRFPCGLPRSDNANYLWIQLFYSAL--- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  GRA  V+++S      A S E E+R+ L+E   ++ +VA+  ++F+   +   LW 
Sbjct: 332 -NATGRAGFVMANSA---SDARSSEQELRQKLIEARAVDVMVAVGPNMFYTVTLPCTLWF 387

Query: 410 LSNRKTE-ERRGKVQLINATDLWTSIRNEGK 439
               K + +R   V  I+A  ++  +    +
Sbjct: 388 FDKGKAKTKRADTVLFIDARHIYRQVDRAHR 418


>gi|255525760|ref|ZP_05392691.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|255510583|gb|EET86892.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 412

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 171/423 (40%), Gaps = 40/423 (9%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            + + IF D +   +    +  E+A  L  I K   GIE   D   D ++  IYE+LI +
Sbjct: 16  KDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKD-ILGEIYEYLIGQ 74

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP  V  +   ++    +            LYDPT G+G  L     
Sbjct: 75  FAASAGKKGGEFYTPHQVSKILAKVVTSGVE-----KSDEFFNLYDPTMGSGSLLLTVGQ 129

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +            +   GQEL   T+ +    +++  +  +     + +  +       
Sbjct: 130 ELPKGTP-------MKYFGQELNTTTYNLARMNLMMHDVSYNNMVLNNADTLESDWPDGP 182

Query: 286 LFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              G    + F   ++NPP+  KW+ D+  + K+ +  + G+  P     S     F++H
Sbjct: 183 DGKGIDHPRSFDAVVANPPYSAKWDNDETKL-KDPRFSDYGKLAPA----SKADYAFILH 237

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L    N  G  AIVL    LF G A   E +IR+ L+E + ++ ++ LP +LF+ T
Sbjct: 238 SIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLIEKNYLDTVIGLPANLFYGT 290

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +    +  +    +  I+A++ +   +N    +  +ND+   +I++ +  R++
Sbjct: 291 SIPTTILVFKKNRKTK---DILFIDASNDFEKGKN----QNNLNDENIDKIINTFKERKD 343

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +            +  P  +    ++  +   E +    + +        +I +
Sbjct: 344 VDKYAHVASIEEIKENEFNLNIPRYVDTFEEEAPIDLEEVNKQLEQDNKEIAELEAEINE 403

Query: 521 PMM 523
            + 
Sbjct: 404 QLK 406


>gi|148825871|ref|YP_001290624.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE]
 gi|148716031|gb|ABQ98241.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE]
          Length = 443

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 163/431 (37%), Gaps = 52/431 (12%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRV 154
           ++    I   ++  K + +     +      +  ++     +F+    + + V      +
Sbjct: 36  DDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEPVHLGAKDI 95

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE+ + RF     +    + TP+ +V L   +L           P     +YDP  
Sbjct: 96  LGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG-RVYDPAM 144

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D       
Sbjct: 145 GSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYD------F 195

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                 + ++     K+  + ++NPPF    W  +  A        +  R+  G P   +
Sbjct: 196 GKYNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLA--------DDPRWAYGTPPKGN 247

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  +L+E +VAL
Sbjct: 248 ANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKGIINANLVECMVAL 301

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    D   +I 
Sbjct: 302 PGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTADDIAKIA 356

Query: 454 DIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           +   + +          F +             VL P R     ++       A+   + 
Sbjct: 357 NTLHAWQKSDGYEDQAAFCKSTTLEEIKDNDF-VLTPGRYVGTAEQEDDGVPFAEK-MQN 414

Query: 507 LSPLHQSFWLD 517
           L+ L +  +  
Sbjct: 415 LTALLKEQFAK 425


>gi|225873158|ref|YP_002754617.1| putative type I restriction-modification system, M subunit
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793577|gb|ACO33667.1| putative type I restriction-modification system, M subunit
           [Acidobacterium capsulatum ATCC 51196]
          Length = 539

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 174/449 (38%), Gaps = 46/449 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           +E      +L   +W  A+      D K +++ + IL    LR         R+ + +  
Sbjct: 7   SEKDAGTTTLEKRLWDAADQFRANSDLKASEYSQPILGLIFLRFAGVRFAAQRARLEKSA 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            +    +   +     A    Y   +     L S     ++   +   ++  + I +  D
Sbjct: 67  ASSRRGSRVDDPAAYHAEGVLYLPPDARFDHLLSLPEAADIGKAV---NEAMREIEKHND 123

Query: 120 -FSSTIARLEK---AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             S  + R      + LL +I K  S I   P T+       IYE+ +  F     +G  
Sbjct: 124 QLSGVLPRSYNRFTSKLLSEILKMISEI---PATLDYDAFGRIYEYFLGEFARTEGQGGG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V L T ++           P     + DP CG+GG    +   VA+    H 
Sbjct: 181 EFYTPSAIVRLLTEVI----------EPYHG-RILDPACGSGGMFVSSARFVAEH--KHN 227

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L  HG E   ET  +C   + +  LE   +   + N               +F + 
Sbjct: 228 PSAELSIHGVEKTDETGRLCRMNLAVHGLEGTIKHGGNVNTYYDD----PHAATGKFDFV 283

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           L+NPPF        DAV+KE     +G   RF  GLP++ + + L++    + L    N 
Sbjct: 284 LANPPFNV------DAVDKERLKDAVGPNRRFPFGLPRVDNANYLWIQLFYSAL----ND 333

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRA  V+++S      A S E EIRR L+E   ++ +VA+  ++F+   +   LW    
Sbjct: 334 KGRAGFVMANSA---SDARSSEQEIRRELIEAGAVDVMVAVGPNMFYTVTLPCTLWFFDR 390

Query: 413 RKTE-ERRGKVQLINATDLWTSIRNEGKK 440
            K    R   V  ++A  ++  I    ++
Sbjct: 391 GKAATPRADTVLFLDARHIYRQIDRAHRE 419


>gi|258515812|ref|YP_003192034.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779517|gb|ACV63411.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 584

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 107/489 (21%), Positives = 186/489 (38%), Gaps = 54/489 (11%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST---LGSTNTRNNLESYIASFS 108
            +   ++ + F         FV    Y + N  E + +    L  T           SF 
Sbjct: 122 YNKNLDQIVTFEKQMRRKVHFVIKPHYLWSNIYELARTQSKYLLQTLQAGFKFIENESFD 181

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRF 166
              + +F + +  S             +C   + I   L   T    ++ N YE+LI +F
Sbjct: 182 SAFRGLFSEVNLDSDKLGRNYEARNTMLCSIITEIAEGLSEFTNETDLLGNAYEYLIGQF 241

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   + A +F TP+ + ++ + +++             I  L D  CG+   L +   H
Sbjct: 242 ASGSGKKAGEFYTPQQISNILSRIVILDSQDPSTGKKPYINNLLDFACGSASLLINVKKH 301

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +           I   +GQE    T+ +    ML+ R      +D    I  G +L  D 
Sbjct: 302 LE-------PNSISQIYGQEKNITTYNLARMNMLLHRF-----KDSEFQIFHGDSLLNDW 349

Query: 287 F--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                       +    ++NPPF  +WE +    E             GL   S     F
Sbjct: 350 DILNEMNPAKKLKCDAVVANPPFSYRWEPNDTLAEDFRFKS------YGLAPKSAADFAF 403

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H  + L    +  G  AI+L    LF G A   E +IR  LLE+  I+ I+ LP +LF
Sbjct: 404 LLHGFHFL----SDEGTMAIILPHGVLFRGGA---EEKIRTKLLEDGNIDTIIGLPANLF 456

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I   + +L   K  +    V  INA++ +    ++GK++ I+  +   +I+D Y  
Sbjct: 457 FSTGIPVCILVLKKCKKFD---DVLFINASEYF----DKGKRQNILLPEHIDKIVDTYQF 509

Query: 459 R--ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARL-----EADITWRKLSP 509
           R  E+ K+SR +  +        + + R +  +   +   LA +     E +   ++   
Sbjct: 510 RKEEDKKYSRRVSMKEIEKNGFNLNISRYVSTAAEEEIVDLADVKKKLDETEDAIKRAKA 569

Query: 510 LHQSFWLDI 518
            H  F  ++
Sbjct: 570 KHNQFLKEL 578



 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 50/157 (31%), Gaps = 3/157 (1%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L   +W  A+ L G     DF   +L F  LR L    E   +A +E    + 
Sbjct: 2   NDTQQKQLGATLWAIADKLRGAMNPDDFRDYMLSFLFLRYLSDNYEE--AAKKELGSDYL 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               ++ES    AG      S            +   E+      D+   +FE    +  
Sbjct: 60  QCENEIESIYN-AGKQDETISLLKEQVTDYFIKQELEENVKNMMIDDHLVLFESKKLTPL 118

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           I    K        +     ++H    P  + SNIYE
Sbjct: 119 IVWYNKNLDQIVTFEKQMRRKVHFVIKPHYLWSNIYE 155


>gi|116511952|ref|YP_809168.1| Type I restriction-modification system methyltransferase subunit
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107606|gb|ABJ72746.1| Type I restriction-modification system methyltransferase subunit
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 462

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 176/415 (42%), Gaps = 46/415 (11%)

Query: 108 SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            D+   +F D +   T    +  E+A  L  I    +      D     V+ ++YE+LI 
Sbjct: 46  EDDFANVFSDVNLGDTRLGTSTNERAKALNDIVLMINDFAFKDDN-GHDVLGDVYEYLIG 104

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   +   +F TP +V  +   ++        ++       +YDP  G+G  L    
Sbjct: 105 QFAANAGKKGGEFYTPHEVSQILAKIVTADAHRSQEQ-----FRVYDPAMGSGSLLLTVQ 159

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +        +       GQEL   T+ +    +++  +        + N+++  TL  
Sbjct: 160 KELPGGEREGSVE----FFGQELNTTTYNLARMNLMMHDVNY-----RNMNLRRADTLDA 210

Query: 285 DLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           D            ++F   ++NPP+ +KWE      EK+ +       G G+   S    
Sbjct: 211 DWPYDEKEGTQIPRKFDAVVANPPYSQKWETKTIDREKDVRFK-----GYGVAPASKADY 265

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L    +  G  AIVL    LF    G+ E +IR+ +++N+L++A++ LP +
Sbjct: 266 AFVLHGLYHL----DNKGTMAIVLPHGVLFR---GASEGKIRKNIIDNNLLDAVIGLPAN 318

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I T + +    +  ++R  V  I+A++ +   +N    +  +++D  R I++ Y
Sbjct: 319 LFYGTSIPTCILVFKGIEARQKRD-VLFIDASNDFVKGKN----QNKLSEDNLRTIIETY 373

Query: 457 VSREN-GKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            SR++  K++ +  LD        + + R +      + T L  L  ++   +  
Sbjct: 374 TSRKDVEKYAHVASLDEIKENDYNLNIPRYVDTFEEEEVTPLPVLAKELKETRAE 428


>gi|126661487|ref|ZP_01732540.1| type I restriction-modification system specificity subunit
           [Cyanothece sp. CCY0110]
 gi|126617230|gb|EAZ88046.1| type I restriction-modification system specificity subunit
           [Cyanothece sp. CCY0110]
          Length = 515

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/463 (21%), Positives = 186/463 (40%), Gaps = 56/463 (12%)

Query: 6   GSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +   L   +W  A++L  +   K +++   +L    LR  +         +++K     
Sbjct: 3   ANTTDLEKRLWDAADELRANSRLKSSEYSVPVLGLIFLRYADYKFTKAEQELKQK----S 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFD 119
               ++      A    Y       S L     S +T   +   +       +    +  
Sbjct: 59  SRRREVSKADYQAKGVMYLPDVARFSYLVNLPESEDTGKAINEAMKGIESENEE-LSNI- 116

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 R E + L+ ++ K+F+ I++  D   D     IYE+ + +F     +   +F T
Sbjct: 117 LPQNYNRFENSLLV-ELLKSFNKIDIDTDLEGDA-FGKIYEYFLGKFAMSEGQKGGEFFT 174

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  VV L   +L                 +YDP CG+GG    + + V+    +      
Sbjct: 175 PTSVVKLIVEILEPY-----------HGRIYDPACGSGGMFVQSASFVSKHRKN--PNAE 221

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSN 298
           +  +GQE   ET  +C   + +  L  D         ++G+T  +D+     +F + ++N
Sbjct: 222 ISIYGQERVTETVRLCKMNLAVHGLSGDI--------KEGNTYYEDIHKSINKFDFVMAN 273

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF        D V+KE   G+L     G+P+  + + L++    + L    N  GRA  
Sbjct: 274 PPFNV------DKVDKEKMKGDLRVDEFGMPRADNANYLWIHFFYSAL----NDNGRAGF 323

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-E 417
           V+++S      A S E EIR+ L+E  +++ ++A+ ++ F+   +   LW L   KT+  
Sbjct: 324 VMANSA---SDARSSELEIRQKLIETGVVDVMIAVGSNFFYTVTLPCTLWFLDKGKTDTT 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457
           R+ KV  I+A  ++  I    +  R    +Q      I+ +Y 
Sbjct: 381 RKNKVLFIDARHIYQQI---DRAHREFTPEQIEFISNIVRLYR 420


>gi|21228842|ref|NP_634764.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907365|gb|AAM32436.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 508

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 180/467 (38%), Gaps = 48/467 (10%)

Query: 6   GSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYL 60
           G+       +W  A +L  +   K +++   +L    LR  E         +    E   
Sbjct: 3   GNNNETEKRLWDVANELRANSGLKASEYSVPVLGLIFLRYAEFKFAQAEQELKLELENNS 62

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +      ++      A    Y   +   S L       N    +    +  +A  E+ + 
Sbjct: 63  SSRRRKNEISKVDYQAKGVLYLPEKARYSYLLDLPESENTGKAVNEAMEAIEA--ENPEL 120

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + +   +     +       +L P  +       IYE+ + +F     +   +F TP
Sbjct: 121 TDILPKNYTSFENDLLIALLKAFKL-PTDIQGDAFGKIYEYFLGKFAMAEGQKGGEFFTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V L   ++                 + DP CG+GG    + + V +   H K    +
Sbjct: 180 ISLVKLIVEIIEPY-----------HGKILDPACGSGGMFVQSAHFVENH--HRKASSEI 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299
             +GQE   +T  +C   + +  L  D         ++G+T  +++      F + ++NP
Sbjct: 227 SVYGQEKVADTVRLCKMNLAVHGLSGDI--------KEGNTYYENIHNSVDAFDFVMANP 278

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K       V+ E   G+  R   G P   + + L++ H  + L    N  GRA  V
Sbjct: 279 PFNVK------KVDFEKVKGD-KRLPLGTPSTDNANYLWIQHFWSAL----NEKGRAGFV 327

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EER 418
           +++S      A   E+EIR+ L+E++ ++ +V++ ++ F+   +   LW L   K   +R
Sbjct: 328 MANSA---SDARGTEAEIRKQLIESNAVDIMVSIGSNFFYTVTLPCALWFLDKSKASTDR 384

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           + K+  I+A +++T +    +  R    +Q  +I  I  S    + S
Sbjct: 385 KDKILFIDAREIFTQV---DRAHREFTAEQIEKIAGIVRSYREEEGS 428


>gi|315195780|gb|EFU26162.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 378

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 169/400 (42%), Gaps = 47/400 (11%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  +
Sbjct: 13  KERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKI 72

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++ D  D L        R +YDPTCG+G  L              K   +    GQE
Sbjct: 73  LAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG----------KETQVYRYFGQE 114

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +    ML+  +  +     + +I+   TL    F G  F   ++NPP+  KW 
Sbjct: 115 RNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWT 169

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D      E  +G        L   S     F+ H+ + L    +  G  A+VL    LF
Sbjct: 170 ADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLF 220

Query: 367 NGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
            G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I
Sbjct: 221 RGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFI 275

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLR 482
           +A++ +   +N    +  ++D Q  +I+D Y  +E   K+S     +        + + R
Sbjct: 276 DASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPR 331

Query: 483 PLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
            +          L +++ D+    ++++ + Q     + +
Sbjct: 332 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 371


>gi|91215848|ref|ZP_01252817.1| type I restriction-modification system methyltransferase subunit
           [Psychroflexus torquis ATCC 700755]
 gi|91185825|gb|EAS72199.1| type I restriction-modification system methyltransferase subunit
           [Psychroflexus torquis ATCC 700755]
          Length = 693

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 171/718 (23%), Positives = 307/718 (42%), Gaps = 89/718 (12%)

Query: 12  ANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
            + IW+ A+ L G   K +DF K ++PF  L  +E  L      + +   +    +  +E
Sbjct: 7   ESEIWETADLLRGAGIKTSDFPKYMMPFFALLMVESRLIRESKRMVDDGESQDNMDEFVE 66

Query: 71  SF-VKVAGYSFYNTSE-YSLSTLGSTNT--RNNLESYIASFSDNAKAIF--------EDF 118
            F ++  GY+ +   E  SL  +   +     + +SYI SF    K +         E F
Sbjct: 67  IFQLEGLGYNDFVIREGKSLKDICKNDKTFDVDFQSYIKSFDAETKYLLGVDKGTEEEKF 126

Query: 119 -DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            D S     L+K  +L+   K +S I+L P    +  ++ + EH+ R++    +E A + 
Sbjct: 127 LDISGISGLLKKKRILFNTVKTWSAIDLTP--YNNSEITTLEEHIKRKWADISAETAGEQ 184

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP D++ L T L+    +           ++YDPTCG G  L    + +     + +  
Sbjct: 185 YTPDDIISLITELIATRIED-----NEQFLSIYDPTCGGGNLLFGVEDKI-----NKEFN 234

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G++     +A+         +ES  R+D +  I+ G+TL+   F  KRF   ++
Sbjct: 235 RPTSTFGEDWSDSLYALAK-------IESRFRQDST--IKYGNTLTDINFIEKRFDVIVA 285

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G  W+  K  +E    N    RF   LP ISDG  LF  H+  +L       G A 
Sbjct: 286 NPPYGVDWKGFKKDIE----NDTTERFID-LPSISDGQFLFTQHILYQL----EDDGFAV 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V + S LF+G AGSGES IR+   E D +EAI+ +PTD FF T I TYLW+ +  K  +
Sbjct: 337 VVHNGSTLFSGDAGSGESNIRKHFFEQDWVEAIIQMPTDEFFNTGIYTYLWVFNKNKKAD 396

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ KV L+NA+DL+  ++    K+R  +N D R +I+  +   +  +++++ D   F + 
Sbjct: 397 RKDKVMLLNASDLFEKLKKSKGKKRKKMNADNRAEIVKAFTDYKENEYTKIFDKWEFYFN 456

Query: 477 R--------------IKVLRPLRMSFILDKTGLARLEA----------DITWRKLSPLHQ 512
           +              I +         L +    +++A          +   + ++ +  
Sbjct: 457 KQSIMLTNVDENGKSITMPTKENREGELVEQKSIKIDASSVLILDSFKENGMKAINQMET 516

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           + + +     +++ Y   +     + + K++    L    +       I        +  
Sbjct: 517 TEYPEDEYQNLKEYYDKHYKNYVAEFNYKADAFAVLDTNGNAYTYNTSIETIIETTKKQV 576

Query: 573 PVTDVNGEWIPDTNLTEYEN---------VPYLESIQDYFVREVSPHVP-DA-------- 614
                NG+ +   +  +            V   + +Q     E+  + P +A        
Sbjct: 577 ETELGNGKIVVKASYKKATKTREAKIEVAVTLTKDLQK--DYEIINYAPIEATNQQNIAN 634

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           ++ K      +     VG E+NFN+ FY+ +  R +  I A+L  +E  +  L +E+A
Sbjct: 635 FMAKYITKPFEYIDNVVGVELNFNKVFYKSEILRTVSTITADLNSLENDLQDLEKELA 692


>gi|217968469|ref|YP_002353703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|217505796|gb|ACK52807.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 517

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 164/451 (36%), Gaps = 43/451 (9%)

Query: 8   AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              L   +W  A+ LW +   K ++F   +L    LR  E       + + E  L     
Sbjct: 5   LNQLETRLWAAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLIESGLGVS-- 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             ++E F   A  + Y       S L       +L   +       +A  E+ +    + 
Sbjct: 63  --EIEKFDYQAEGALYLPDNAHFSYLLDLAEGQDLGKAVNEAMAAVEA--ENEELKGVLP 118

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R         + +    +      V       IYE+ + +F     +    F TP  +V 
Sbjct: 119 RSYGRLPNTVLVELLRVLN-GLGEVEGDAFGKIYEYFLGKFALAEGQKGGVFYTPTSIVK 177

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   ++                 ++DP CG+GG    +   V+      +    L  +G 
Sbjct: 178 LIVEIIEPF-----------HGKIFDPACGSGGMFVQSAQFVSRH--QKRAAEELTVYGT 224

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E   +T  +    + +  L  D R     N          +    +F + ++NPPF    
Sbjct: 225 EKANDTVKLAKMNLAVHGLSGDIRES---NTYYEDPHKAVVGNTGKFDFVMANPPFNVS- 280

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 V+KE    +  RF  G+P   + + L++ H    L    N  GRA  V+++S  
Sbjct: 281 -----GVDKERVKDD-PRFPFGIPTTDNANYLWIQHFYTAL----NERGRAGFVMANSA- 329

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424
             G A   E EIR+ L++   ++ IV++ ++ F+   +   LW     K + ER+ +V  
Sbjct: 330 --GDARGTELEIRKKLIQTGGVDVIVSVGSNFFYTVTLPCTLWFFDRAKAKGERKDEVLF 387

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           I+A   +  +    +  R    +Q   + +I
Sbjct: 388 IDARGTYRQV---SRAIRDFLPEQIEFLANI 415


>gi|323438646|gb|EGA96389.1| type I restriction-modification system M subunit [Staphylococcus
           aureus O11]
          Length = 371

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/400 (22%), Positives = 170/400 (42%), Gaps = 47/400 (11%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  +
Sbjct: 6   KERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKI 65

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++ D  D L        R +YDPTCG+G  L              K   +    GQE
Sbjct: 66  LAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG----------KETQVYRYFGQE 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +    ML+  +  +     + +I+   TL    F G  F   ++NPP+  KW 
Sbjct: 108 RNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWT 162

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            D      E  +G        L   S     F+ H+ + L    +  G  A+VL    LF
Sbjct: 163 ADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLF 213

Query: 367 NGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
            G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I
Sbjct: 214 RGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFI 268

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLR 482
           +A++ +   +N    +  ++D Q  +I++ Y  +E   K+S     +        + + R
Sbjct: 269 DASNDFEKGKN----QNHLSDAQVERIINTYKCKETIDKYSYSATLQEIADNDYNLNIPR 324

Query: 483 PLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
            +      +   L +++ D+    ++++ + Q     + +
Sbjct: 325 YVDTFEEEEPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 364


>gi|260581409|ref|ZP_05849223.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae RdAW]
 gi|12643776|sp|Q57168|T1MH_HAEIN RecName: Full=Putative type I restriction enzyme HindVIIP M
           protein; Short=M.HindVIIP
 gi|1574745|gb|AAC22936.1| type I modification enzyme (hsdM) [Haemophilus influenzae Rd KW20]
 gi|260091951|gb|EEW75900.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae RdAW]
          Length = 443

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 163/430 (37%), Gaps = 50/430 (11%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRV 154
           ++    I   ++  K + +     +      +  ++     +F+    + + V      +
Sbjct: 36  DDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEPVHLGAKDI 95

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE+ + RF     + +  + TP+ +V L   +L           P     +YDP  
Sbjct: 96  LGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML----------EPYSG-RVYDPAM 144

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D       
Sbjct: 145 GSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYD------F 195

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                 + ++     K+  + ++NP F  K   ++   +         R+  G P   + 
Sbjct: 196 GKYNADSFTQPQHIDKKMDFIMANPHFNDKEWWNESLADD-------PRWAYGTPPKGNA 248

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL+E +VALP
Sbjct: 249 NFAWLQHMIYHL----SPNGKIALLLANGSM--SSQTNNEGEIRKAIINADLVECMVALP 302

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    D   +I D
Sbjct: 303 GQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTADDIAKIAD 357

Query: 455 IYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              + +          F +             VL P R     ++       A+   + L
Sbjct: 358 TLHAWQTSDGYEDQAAFCKSATLEEIKNNDF-VLTPGRYVGTAEQEDDGVPFAEK-MQNL 415

Query: 508 SPLHQSFWLD 517
           + L +  +  
Sbjct: 416 TALLKEQFAK 425


>gi|223040255|ref|ZP_03610533.1| type I restriction-modification system, M subunit [Campylobacter
           rectus RM3267]
 gi|222878508|gb|EEF13611.1| type I restriction-modification system, M subunit [Campylobacter
           rectus RM3267]
          Length = 598

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 191/486 (39%), Gaps = 43/486 (8%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSF---YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            ++   F         FV    Y +   Y  S    + L  T           SF     
Sbjct: 140 LDQVSFFEKQMRKKVHFVIKPQYLWSNIYELSRTQNNQLLKTLQAGFKFIENESFDSTFY 199

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +F + +  S             +C   + I  +L   T    ++ N YE+LI +F +  
Sbjct: 200 GLFSEVNLDSDKLGKNYQLRNEMLCSIITEIAEKLAEFTNEIDLLGNAYEYLIGQFAAGS 259

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ + ++ + +++             I  L D  CG+G  L +   H+   
Sbjct: 260 GKKAGEFYTPQQISNILSRIVILDSHKPELGKRDFINNLLDFACGSGSLLINVKKHLE-- 317

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTG 289
                   I   +GQE    T+ +    ML+    +S+ +     ++    +L  ++   
Sbjct: 318 -----PNSISQIYGQEKNITTYNLARMNMLLHGFKDSEFQIFHGDSLLNDWSLLNEMNPA 372

Query: 290 KR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           K+      ++NPPF  +WE D    E             GL   S     FL+H  + L 
Sbjct: 373 KKLECDAVVANPPFSYRWEPDDTLAEDFRFKS------YGLAPKSAADFAFLLHGFHFL- 425

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +  G  AI+L    LF G A   E +IR  LL++  I+A++ LP +LFF T I   +
Sbjct: 426 ---SKNGTMAIILPHGVLFRGGA---EEKIRTKLLKDGNIDAVIGLPANLFFSTGIPVCI 479

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFS 465
            +L   K  +    V  INA++ +      GK++ ++  +   +I++ Y  R  ++ ++S
Sbjct: 480 LVLKKCKEPD---DVLFINASEYYEK----GKRQNVLLPEHIDKIVETYQFRREDDKRYS 532

Query: 466 RML---DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK--LSPLHQSFWLDILK 520
           R +   +    GY  + + R +  +   +   +  +  ++   +  +     +  + + +
Sbjct: 533 RRVSMGEIEKNGY-NLNISRYVSTAPKEEIIDIEEVAKELRTIEYDIKKAKDAHNIFLKE 591

Query: 521 PMMQQI 526
             ++Q+
Sbjct: 592 LGLEQL 597



 Score = 67.1 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
              L + +W  A+ L G     DF   +L F  LR L    E   +A +E    +    
Sbjct: 5  QQKQLGSALWGIADKLRGTMNADDFRDYMLSFLFLRYLSDNYET--AANKELGKEYMDCE 62

Query: 67 IDLESF 72
           ++E+ 
Sbjct: 63 KEIENI 68


>gi|148377828|ref|YP_001256704.1| modification (methylase) protein of type irestriction-modification
           system [Mycoplasma agalactiae PG2]
 gi|148291874|emb|CAL59265.1| Modification (Methylase) protein of type Irestriction modification
           system [Mycoplasma agalactiae PG2]
          Length = 892

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 131/714 (18%), Positives = 262/714 (36%), Gaps = 98/714 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +   L + IW  A  L    +  ++   +L   L + L         ++ + +  L +  
Sbjct: 6   TKEKLGSKIWAAANKLRDKLEAYEYKDYVLGLILYKFLCEKQTDYLIKNWISKDQLKYFD 65

Query: 65  SNI------------------------DLESFVKVAGYSFYNTSEYSLSTLGS------T 94
           S                          D +        +F + S+  ++ L +       
Sbjct: 66  SKYLDNISNFSAFYTGDNLEGNYEIFKDAKKECIDENGNFIDYSDLFIAWLENKSSFNIQ 125

Query: 95  NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
           N +    ++  S +D  K++F+D    F   +++L  +       I      I   P T 
Sbjct: 126 NFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGADTNEQTKVISDLLDIINDIPSTN 185

Query: 151 PD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            D  V+  IYE+LI RF S   + A +F TP +V  L + ++                 +
Sbjct: 186 QDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKD------REFIKV 239

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L           S +     +  + QEL+ E   +    ++++ +     
Sbjct: 240 YDPTSGSGSLLLTIGQEFKKYNSGN---SPVSYYAQELKAEVFNLTRMNLIMKNISPTEI 296

Query: 270 RDLSKNIQQGSTLSKDLFTGKRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              + +  +      +      +        +SNPP+ + W  +K  ++  +        
Sbjct: 297 HARNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKHTLDPRY-------I 349

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+   +     FL+H            G  AIVL    LF G +   E +IR+ L++ 
Sbjct: 350 EYGIAPKTKADYAFLLHDLYH----VQPDGIMAIVLPHGVLFRGNS---EGQIRKTLIQK 402

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+        K    
Sbjct: 403 QQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVK----EGKNNKF 455

Query: 445 NDDQRRQILDIYVSR-ENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLARL-EA 500
           +    ++I D+  +R E   FSR +  D        + + R +      ++  L  L   
Sbjct: 456 SKSHIKKIADVVNNRIEIKNFSRRVLLDEIVANDYNLNISRYIDNFKKQEQHDLYSLMHG 515

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
            I+  +L+ L   F L     +  +++       +  +  K +   T+  + + S     
Sbjct: 516 GISKEELAKLDNFFGLFT--GLKDKLFKINANNYYELKVAKEDINPTINGEWNVSE---- 569

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYEN-VPYLESIQDYFVREVS--PHVPDAYID 617
                  D ++         ++      E+ N V + E++ DY    +   P V    I 
Sbjct: 570 --YINSFDKKSAKFLKFFKNFVTSVEQIEHINLVEFEEALTDYIFENMDSIPLVDVYDIY 627

Query: 618 KIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK----LQDI-DAELKGVEAQIAT 666
           +IF++  D     +  E+  +++   YQ S      L +I + EL+ +E++   
Sbjct: 628 QIFVNNFDLIKDDI--EL-ISKY---YQESEDKTNALSEILNGELEKLESKSKK 675


>gi|283954323|ref|ZP_06371844.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794122|gb|EFC32870.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 335

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 189/385 (49%), Gaps = 60/385 (15%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            LSNPP+GK WE D+  +  E K         RF  G+   SDG M++L+++ +K++   
Sbjct: 1   MLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFRVGITSKSDGQMMYLLNMLSKMKTDS 60

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R A V + S LFN  +G     IR+ ++E D +EAIVALPT++F+ T I T++WI+
Sbjct: 61  PLGSRIASVHNGSSLFNSDSGMA--AIRKDIIEKDYLEAIVALPTNMFYNTGIPTFIWII 118

Query: 411 SNRKTEERRGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +N+K E ++GKV LINAT+   ++ ++   G K+  +  +   +I  +++     K  ++
Sbjct: 119 TNKKPEHKKGKVWLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENATNKDCKI 178

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPMMQQI 526
            D + FGY +I + +P  +  + D    A+L + +    KL  L Q+             
Sbjct: 179 YDNKDFGYTKITIEKPKSIEALKDDEKFAKLKDKEKILEKLQELEQN------------P 226

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             +   E F+         K L VK  KS     I+                        
Sbjct: 227 QDFKDREEFI---------KFLGVKLKKSEENLIID---------------------SDK 256

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
               E +P    IQ Y+  EV P+V +++I +        E   VGYEI FN++FY Y P
Sbjct: 257 TNNTEKIPLKIDIQSYYDTEVKPYVKNSWIAR--------ESASVGYEILFNKYFYTYTP 308

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            RKL++I+ EL+ +E ++  LL E+
Sbjct: 309 PRKLEEINNELEKLEKEVQDLLREI 333


>gi|313669544|ref|YP_004049969.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156741|gb|ADR35416.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 529

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 189/503 (37%), Gaps = 53/503 (10%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +  +L   +W  A++L    +   +++ + +L    LR  E      + A+ E       
Sbjct: 5   NIEALEKRLWSAADELRANSNLTASEYSRPVLGLIFLRYAEYRYLIAKEAI-ESTQTSRR 63

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLG------STNTRNNLESYIASFSDNAKAIFEDF 118
              D+++ ++  G  +        + L            N+    + + ++  +      
Sbjct: 64  RGTDIKTAIQAEGAMYVPDVALFDNLLKLPDGADIGRAINDAMKALEAENEAIRDTLPKT 123

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                        +L  + KNF+GI      +   V   IYE+ +  F     +G  +F 
Sbjct: 124 YTK------FDNAILITLLKNFAGIRF---DIGTDVFGRIYEYFLTEFAKSEGQGGGEFF 174

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L T ++                 ++DP CG+GG    + + VA+   +     
Sbjct: 175 TPAHLVRLITEIIEPY-----------HGKVFDPACGSGGMFVSSASFVAEHNRNA--SS 221

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLS 297
            L   GQE   +T  +    + +  L+ D         ++G++  +D+     +F + ++
Sbjct: 222 ELSIFGQEKTGDTVRIAKLNLAVHGLQGDI--------KEGNSYYEDIHQCAGQFDFVMA 273

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF        + ++KE    +  RF  G+P + +G+ L++      L    N  GRA 
Sbjct: 274 NPPFNV------NNIQKERIADDKARFPFGMPNVDNGNYLWIQLFYASL----NDTGRAG 323

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            V+++S      A   E EIRR L  +  ++ +VA+ ++ F+   +   LW L   K + 
Sbjct: 324 FVMANSA---ADARGSEMEIRRQLTLSGGVDVMVAISSNFFYTVTLPCTLWFLDKGKPQS 380

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           R+ KV  I+A  ++  +    +       +    I+ +Y         +           
Sbjct: 381 RKDKVLFIDARHIFKQVTRSVRDYSSEQLNFIADIVRLYRGEATDDTYKTHHEDERNDGE 440

Query: 478 IKVLRPLRMSFILDKTGLARLEA 500
             V R        D  GL ++  
Sbjct: 441 YTVERFFADGTYQDIAGLCKVAT 463


>gi|121534614|ref|ZP_01666436.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
 gi|121306866|gb|EAX47786.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
          Length = 518

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 179/454 (39%), Gaps = 49/454 (10%)

Query: 8   AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              +   +W  A+ L  +   K +++   +L    LR  +         + EK  + G  
Sbjct: 5   NNEIEKKLWTAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSMAEKELAEKARSAGSR 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSST 123
               ++  +  G   Y   +   S L       N+   +       +A  ED       T
Sbjct: 65  RAIGKADYQARG-VMYLPEQARYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPKT 123

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL+   L+  + K FS + +    V   V  N+YE+ +  F     +   +F TP  +
Sbjct: 124 YTRLDNDTLIA-LLKIFSEVPM---DVEGDVFGNVYEYFLGEFARSEGQRGGEFYTPTSL 179

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 + DP CG+GG    +   V +   +      +  +
Sbjct: 180 VKLIVEVIEPYQG-----------RILDPACGSGGMFVQSARFVQNHKKN--PSSEISIY 226

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFG 302
           GQE   ET  +C   + +  L  D         +Q +T  +++     RF + ++NPPF 
Sbjct: 227 GQEKVAETVRLCKMNLAVHGLSGDI--------RQANTYYENVHNCLNRFDFVMANPPFN 278

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  D V+KE    +  R+  GLP I + + +++    + L    N  GRA  V+++
Sbjct: 279 V------DGVDKEKIKDD-PRYPFGLPTIDNANYIWIQEFYSAL----NDKGRAGFVMAN 327

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGK 421
           S      A   E EIR+ L+++ +++ ++A+  + F+   +   LW     K + ER  K
Sbjct: 328 SA---SDARGSELEIRKKLIQDRVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQTERGDK 384

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           V  I+A +++  +    +  R    +Q   I +I
Sbjct: 385 VLFIDARNIYRQV---DRAHREFTPEQIEFIANI 415


>gi|229082883|ref|ZP_04215307.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock4-2]
 gi|228700421|gb|EEL52983.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock4-2]
          Length = 584

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 168/463 (36%), Gaps = 37/463 (7%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST---LGSTNTRNNLESYIASFSDNAK 112
            ++   F         FV    Y + N  E + +    L              SF    +
Sbjct: 126 LDQVATFEKQMRRKVHFVIKPQYLWSNIYELARTQNKYLLKNLQAGFKFIENESFDSTFR 185

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEV 170
            +F + +  S             +C   + I       P+   ++ + YE+LI +F +  
Sbjct: 186 GLFSEVNLDSDKLGKNYELRNTTLCSIITAIAEGLSEFPNESDLLGDAYEYLIGQFAAGS 245

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP+ +  + + ++              ++ + D  CG+G  L +    +   
Sbjct: 246 GKKAGEFYTPQQISTILSRIVTLDSQDPSTGKKERLKNILDFACGSGSLLINVRKQL--- 302

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLF 287
                   I   +GQE    T+ +    ML+  L+    +    +            +  
Sbjct: 303 ----GANSIGQIYGQEKNITTYNLARMNMLLHGLKDSEFKIFHGDSLLNDWDILTEMNPA 358

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                   ++NPPF  +WE +    E             GL   S     FL+H  + L 
Sbjct: 359 KKLECDAVVANPPFSYRWEPNDTLAEDFRFKS------YGLAPKSAADFAFLLHGFHFL- 411

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +  G  AI+L    LF G A   E +IR  LL++  I+ I+ LP +LFF T I   +
Sbjct: 412 ---SDEGTMAIILPHGVLFRGGA---EEKIRTKLLKDGNIDTIIGLPANLFFSTGIPVCI 465

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--KFS 465
            +L   K  +    V  INA++ +    + GK++ ++  +   +I++ Y  R+    K+S
Sbjct: 466 LVLKKCKKFD---DVLFINASEYY----DRGKRQNVLMPEHIDKIVETYKYRKEDDKKYS 518

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           R +           +     +S + ++  +   +      ++ 
Sbjct: 519 RRVSMEEIEKNDFNLNISRYVSTVAEEETIDLADVKKNLDEIE 561



 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 4  FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAF 62
                 L   +W  A+ L G     DF   +L F  LR L    E   +  +   YL  
Sbjct: 2  NDTQQKQLGATLWGIADKLRGSMNADDFRDYMLSFLFLRYLSDNYEEAAKKELGSDYLQC 61

Query: 63 GGS 65
             
Sbjct: 62 EEE 64


>gi|298528585|ref|ZP_07015989.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512237|gb|EFI36139.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 516

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 178/461 (38%), Gaps = 45/461 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              +   +   +W  A++L  +   K +++   +L    LR  +        A  ++   
Sbjct: 1   MNRNGNQVEARLWAAADELRANSKLKPSEYSVPVLGLVFLRYADHKF----KAAAKELEC 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            GG    +      A    Y   +   S L      +NL + I       +A  E+ D  
Sbjct: 57  SGGGRRKIGPADYHARGVVYLPEKARFSYLIQLPEGSNLGAAINDAMRAIEA--ENTDLR 114

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +       Y + +    +   P  +       IYE+ +  F     +   +F TP 
Sbjct: 115 EVLPKTYNRFENYLLKELLKTMNSVPMDIEGDAFGKIYEYFLGNFARAEGQKGGEFFTPT 174

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   ++                 +YDP CG+GG    + + V +   +      L 
Sbjct: 175 AIVKLIVGIIEPY-----------HGRIYDPACGSGGMFVQSAHFVEEHRKNPGSE--LS 221

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPP 300
            +GQE   ET  +    + +  L  D         +QG+   +DL   K +F Y ++NPP
Sbjct: 222 IYGQEKVAETVRLGKMNLAVHGLGGDI--------RQGNAYYEDLHNSKAKFEYVMANPP 273

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F        D V+K+    +  RF  GLPK  + + L++    + L    N  GRA  V+
Sbjct: 274 FNV------DRVDKDRLKDD-PRFPFGLPKPDNANFLWIQMFYSAL----NDKGRAGFVM 322

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERR 419
           ++S      A   E +IR+ L+E++ ++ +VA+ ++ F+   +   LW L   +K  +R 
Sbjct: 323 ANSA---SDARGSELDIRKQLIESNSVDVMVAVGSNFFYTVTLPCTLWFLDRGKKNTDRA 379

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            KV  I+A  ++  I    +       +    I  +Y + E
Sbjct: 380 DKVLFIDARHIYRQIDRAHRDWTPAQIEFLANIARLYRNEE 420


>gi|307947316|ref|ZP_07662650.1| N-6 DNA methylase [Roseibium sp. TrichSKD4]
 gi|307769458|gb|EFO28685.1| N-6 DNA methylase [Roseibium sp. TrichSKD4]
          Length = 403

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 112/348 (32%), Positives = 179/348 (51%), Gaps = 22/348 (6%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            + + +   L   IW  A  L G ++   + +V+LP T+LRR++  L PT+  V ++Y  
Sbjct: 24  CDLSQNHDQLVGLIWNIANKLRGPYRPPQYRRVMLPLTVLRRMDLVLAPTKDKVLKQYAK 83

Query: 62  FGGSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNA 111
                   ++  K+ G           YN S+Y    L     N   NL +YI  FS  A
Sbjct: 84  LQAQGHSEDAVHKILGKTASGDREQPLYNVSQYDFEKLLGDPNNIARNLVTYIEGFSPKA 143

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSE 169
           K IF  F F + I +L+ A  L+ I K F+   ++LHPD V +  M  ++E L+R+F  +
Sbjct: 144 KDIFSKFGFDAEIEKLDNANRLFMIIKEFTDPRVDLHPDRVNNLQMGYVFEELVRKFNEQ 203

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A D  TPR+V+ L   L+   D+ ++   PG+ RT+YDPTCGTGG L+ +  ++ +
Sbjct: 204 ANEEAGDHFTPREVIRLMAHLMYTEDEDVYT--PGIARTIYDPTCGTGGMLSVSEEYIRE 261

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                     L+ +GQE   E++A+C + +LI+    +P  ++      G   S+D    
Sbjct: 262 QNPQAN----LILYGQEYNAESYAICCSDLLIKD---EPIDNIHFGDTLGDGKSEDGHPD 314

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           K+FHY ++NPPFG +W+  +  V+KE     L RFG       DG++L
Sbjct: 315 KKFHYMMANPPFGVEWKTQQSIVQKELTRLVLSRFGAA-HAYHDGALL 361


>gi|330723247|gb|AEC45617.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis MCLD]
          Length = 906

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 117/574 (20%), Positives = 218/574 (37%), Gaps = 77/574 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---TRSAVREK 58
           T  T +   L N IW+ A ++ G  + T++   +L     + +    E      +   E 
Sbjct: 11  TNKTFTKQELGNKIWEAANEMRGSLEITEYKNFLLELIFYKTISQRFEEWFLKYNGNIED 70

Query: 59  YLAFGGSNIDLESFVKVA---------------GYSFYNTSEYSLSTLGSTNTRNN---- 99
                    +  S +K                    ++   +Y  S+    N RN     
Sbjct: 71  IQWLNDDYYEDNSSIKSPYSKNEYEEIKESANKNLGYFIQHQYLYSSWMKDNARNFSASL 130

Query: 100 LESYIASFSDNAKAI----FEDF--DFSSTIARLEKAG-LLYKICKNFSGI--ELHPDTV 150
           L   I SF  N +      FE+     S  + +L        K  K    I  ++     
Sbjct: 131 LNRSINSFDSNLRGKSENLFENIFKTLSDELYKLSTNEAEQTKKLKKLIEIIKDIPVKKG 190

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++  +YE+LI +F S   +   +F TP ++  L   ++       F         +Y
Sbjct: 191 QYDILGFVYEYLIGKFASSAGKKGGEFYTPHEISLLMAEIV------AFHLKHKDNIKIY 244

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPT G+G  L +            K    +  + QE+   T+ +    +++  +      
Sbjct: 245 DPTSGSGSLLLNIGEVFQKFN---KKKHSVTYYAQEINESTYKLTKMNLILHGVNVS--- 298

Query: 271 DLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               + +   TL +D    K       R    +SNPP+  KW+ +    +K  ++     
Sbjct: 299 --EIHARNADTLKQDWPIDKINSTEPLRVDSVVSNPPYSLKWDTENAESDKRFRS----- 351

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               +   +     FL+H    +    +  G  AIVL    LF    G  E  IR  L+E
Sbjct: 352 --YAVAPKAKADFAFLLHDLYHI----SPDGIVAIVLPHGVLFR---GGNEKIIRERLIE 402

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           N  I++I+ LP+D+F+ T+I+T + IL  RKT + + ++  ++A+ L+        K+  
Sbjct: 403 NAEIDSIIGLPSDIFYGTSISTIIVIL-KRKTNDEKNQILFVDASKLFVK----EGKKNK 457

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLAR-LE 499
           +     ++I D   ++ E   FSR++D          + + R L      +K  L   + 
Sbjct: 458 LEISHIKKIADTVNNKIELKDFSRLVDVSEIRENDYNLNISRYLDNFKKEEKFDLYSTIY 517

Query: 500 ADITWRKLSPLHQSF--WLDILKPMMQQIYPYGW 531
            +I+  +L   ++ F  +LDI   +++     G+
Sbjct: 518 GNISETELDEFNEFFTKFLDIKNQLLKPTEKQGY 551


>gi|296132420|ref|YP_003639667.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           sp. JR]
 gi|296030998|gb|ADG81766.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           potens JR]
          Length = 518

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 97/454 (21%), Positives = 176/454 (38%), Gaps = 49/454 (10%)

Query: 8   AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              +   +W  A+ L  +   K +++   +L    LR  +         + EK     GS
Sbjct: 5   NNEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSAAEKELVEK-AKVSGS 63

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSST 123
              +      A    Y   +   S L       N+   +       +A  ED       T
Sbjct: 64  RRAIGKADYQARGVMYLPEQAKYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPKT 123

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL+   L+  + K FS I +    V   V  N+YE+ +  F     +   +F TP  +
Sbjct: 124 YTRLDNDTLIA-LLKIFSEIPM---DVEGDVFGNVYEYFLGEFARSEGQRGGEFYTPTSL 179

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 + DP CG+GG    +   V +   +      +  +
Sbjct: 180 VKLIVEVIEPYKG-----------RILDPACGSGGMFVQSARFVQNHKKN--PSSEISIY 226

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302
           GQE   ET  +C   + +  L  D         +Q +T  +++     RF + ++NPPF 
Sbjct: 227 GQEKVAETVRLCKMNLAVHGLSGDI--------RQANTYYENVHNCINRFDFVMANPPFN 278

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  D V+KE    +  R+  GLP   + + +++    + L    N  GRA  V+++
Sbjct: 279 V------DGVDKEKIKDD-PRYPFGLPSNDNANYIWIQEFYSAL----NDKGRAGFVMAN 327

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGK 421
           S      A   E EIR+ L+++ +++ ++A+  + F+   +   LW     K + ER  K
Sbjct: 328 SA---SDARGSELEIRKKLIQDKVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQTERGDK 384

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           V  I+A +++  +    +  R    +Q   I +I
Sbjct: 385 VLFIDARNIYRQV---DRAHREFTPEQIEFIANI 415


>gi|158522935|ref|YP_001530805.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511761|gb|ABW68728.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 680

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 126/621 (20%), Positives = 219/621 (35%), Gaps = 90/621 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65
           +  +L + ++  A+ L    +  D+   IL     +RL       + + ++E        
Sbjct: 3   TKQALGSTLFGMADILRDKVE--DYKSYILSLLFFKRLSDNYTWESENGIKEFVKDNKRE 60

Query: 66  NIDLE---------SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
             D E          F    G  + +     L      +  N   + IA  + + K +  
Sbjct: 61  PNDREKEIILRRKHDFTIPDGCFWGDVRNAPLD--KKNDALNKAVNAIADSNTSLKGVIN 118

Query: 117 DFDFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS--E 169
              ++      +  +     +L  +      ++L        ++ + YE+LI+RF     
Sbjct: 119 TVRWNEPSPDGSGGKKLHPEVLSPLINYLDAVDLSNRNASVDILGDAYEYLIKRFADENR 178

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
               A  F TP++VV +    L           P    TLYDPTCG+GGFL +A  ++  
Sbjct: 179 NGTTAGQFYTPQEVVDIIVRYL----------KPQKGSTLYDPTCGSGGFLINAAKYIKK 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K    +   GQE    T A+    M++  L++  ++  +       T   +  T 
Sbjct: 229 TTGTQKN---IRLFGQEDVWNTWAIANINMILHGLDAAIKKGDTL-KDPKFTEEDNDLTI 284

Query: 290 KRFHYCLSNPPFGK-KWEKDKDAVE--------------------KEHKNGELGRFGPGL 328
           K F   ++N PF +  W K+ +                       KE  N    RF  G+
Sbjct: 285 KTFDLVMANFPFSQENWWKNGEPKRDKKGKPITNKDGSPQLNYPGKEDFNDPYERFDYGI 344

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE------------ 376
           P  S+G   FL H+   +    N  G+A +V     LF G+    E E            
Sbjct: 345 PPFSNGDFAFLQHIVASM----NESGKAGVVCPQGVLFRGQPQKTEEEDGQNRKADDEYL 400

Query: 377 IRRWLLEN------------DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           IRR  L+             ++I+AIV LP +LF+ T I   + + +  K EER+ KV +
Sbjct: 401 IRRGFLQGPVNKDGEFVHAINIIDAIVVLPGNLFYGTTIPGSILLFNKNKPEERKNKVLM 460

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           + A         E      +      +I  I  S  + + ++          R  +   L
Sbjct: 461 VYAAKEG--WYKEESNMNTLLPQDILRISTILESWGDMEIAKAWITSQKSRLRDLIQEEL 518

Query: 485 RMS---FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                   LD      L  D   +K   L ++   +  KP   Q+     A+  +++ IK
Sbjct: 519 DFKKGEIDLDTQEDIELAKDK-HQKAGELVKAKEAEGKKPTQAQLNNLQKAKETLEKLIK 577

Query: 542 SNEAKTLKVKASKSFIVAFIN 562
             E +    +         I+
Sbjct: 578 QKEQRIADAEGQAEKERIAID 598


>gi|71906938|ref|YP_284525.1| N-6 DNA methylase [Dechloromonas aromatica RCB]
 gi|71846559|gb|AAZ46055.1| N-6 DNA methylase [Dechloromonas aromatica RCB]
          Length = 529

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 171/458 (37%), Gaps = 46/458 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T +   L + +W  A+ LW +   K ++F   +L    LR  E            K +A
Sbjct: 15  MTINLQDLESRLWSAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRF----HEAEAKLVA 70

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            G    D+E F   A  + Y       + L      +++   I   ++   A+  D D  
Sbjct: 71  GGLEVSDIEKFDYQAEGALYLPETARFTYLLDLAEGHDIGKAI---NEAMAAVEADNDEL 127

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             +       +  ++      +      +       IYE+ + +F     +    F TP 
Sbjct: 128 KGVLPRSYGKVENRVLVELLRLLNGLGEIEGDAFGKIYEYFLGKFALAEGQKGGVFYTPT 187

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   ++           P   + ++DP CG+GG    +   V       +    L 
Sbjct: 188 SIVKLIVEII----------EPFHGQ-IFDPACGSGGMFVQSAMFVGRHKK--RAAEELT 234

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
             G E   +T  +    + +  L  D        +++ +T  +D      RF + ++NPP
Sbjct: 235 VFGTEKSNDTVKLAKMNLAVHGLSGD--------VRESNTYYEDPHKAVGRFDFVMANPP 286

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F          V+KE    +  RF  G+P   + + L++    + L    N  GRA  V+
Sbjct: 287 FNVS------GVDKERIKDD-PRFPFGVPTTDNANYLWIQLFYSAL----NNTGRAGFVM 335

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERR 419
           ++S    G A   E EIR+ L+ +  +EAIV++  + F+   +   LW     K   ER+
Sbjct: 336 ANSA---GDARGAELEIRKKLILSGGLEAIVSVGPNFFYTVTLPCTLWFFDKTKAKRERK 392

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            KV  I+A   +  +    +       +    I+ ++ 
Sbjct: 393 DKVLFIDARGYYRQVSRAIRDFLPEQVEFLSNIVRLWR 430


>gi|294850846|ref|ZP_06791547.1| type I restriction enzyme M protein [Staphylococcus aureus A9754]
 gi|294822296|gb|EFG38764.1| type I restriction enzyme M protein [Staphylococcus aureus A9754]
          Length = 356

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 163/388 (42%), Gaps = 47/388 (12%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           N   +      +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D L
Sbjct: 3   NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL 62

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                   R +YDPTCG+G  L              K   +    GQE    T+ +    
Sbjct: 63  --------RHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 104

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+  +  +     + +I+   TL    F G  F   ++NPP+  KW  D      E  +
Sbjct: 105 MLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFS 159

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G        L   S     F+ H+ + L    +  G  A+VL    LF G A   E  IR
Sbjct: 160 GYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIR 207

Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +N 
Sbjct: 208 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN- 264

Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTG 494
              +  ++D Q  +I+D Y  +E   K+S     +        + + R +          
Sbjct: 265 ---QNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPID 321

Query: 495 LARLEADI--TWRKLSPLHQSFWLDILK 520
           L +++ D+    ++++ + Q     + +
Sbjct: 322 LDQVQQDLKNIDKEIAEIEQEINAYLKE 349


>gi|332661883|ref|YP_004451353.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332337380|gb|AEE54480.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 606

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 108/587 (18%), Positives = 210/587 (35%), Gaps = 69/587 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT        L + +W  A+ L    + K +++   IL    LR      +  +  +  +
Sbjct: 1   MT--ATQLKELEDTLWSAADKLRAESNLKSSEYATPILGLIFLRFASIRYQRVKPEIEAE 58

Query: 59  YLAFGGSNID-LESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDNAKA 113
             A   S +   E+ + +A   FY   E    Y LS     +    ++  + +       
Sbjct: 59  LKAQANSRMQQPEAEIAIAKCGFYLPPEAQYDYLLSLPEEADIAKAIKHAMEAIEQYKPE 118

Query: 114 IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +    D    +   E   L   + K F+ I   P+     V   +YE+ +  F     
Sbjct: 119 LLDSLPKDEYFKLYTTEDRSLPKSLLKIFANI---PEDASGDVFGKVYEYFLAEFALAEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--AD 229
           +G  +F TP  VV L   ++                T++DP CG+GG    +   V    
Sbjct: 176 QGGGEFFTPTSVVKLMVEVIEPYQG-----------TIFDPACGSGGMFVQSSYFVDRRR 224

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              H      L+ +G E   +T  +    + +  L  + R   S       +L       
Sbjct: 225 AELHDTDTKDLMVYGVEKTADTVKLARMNLAVNGLRGEIRPANSYYEDPYDSLG------ 278

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-----------RFGPGLPKISDGSMLF 338
            RF Y L+NPPF    + + D V+ + +    G                +  + + + L+
Sbjct: 279 -RFDYVLANPPFNVD-DVNLDRVKHQPRFNAYGIPQNKGKSSKKGQDKDVNTVPNANYLW 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +   A  L+      GRAA+V+++S      A + E++IR+ L+ + +I+A++ LP ++F
Sbjct: 337 INLFATSLK----PTGRAALVMANSA---SDARNSEADIRQNLIRSGVIDAMLTLPKNMF 389

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +   +   LW     +      K+  ++A + +  +    +  R    +  + I  I+  
Sbjct: 390 YTVTLPATLWFFDKSRAGT-EPKILFVDARNTFRQV---TRALREFTPEHIQNIAVIFRL 445

Query: 459 R--ENGKFSRML-DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP------ 509
              E  + S +L  Y        +  +         +      +A   W K         
Sbjct: 446 FRGETERLSSLLQQYEEQATDFAQQAQAQAELLAQLQADKPADKALKPWEKQVEEASKQH 505

Query: 510 ---LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
              L Q+ +       +Q+ +P G  E        ++ A+  +   S
Sbjct: 506 QTLLEQAQYFQAQIAWLQERFPNGVYEDVTGLCKAASLAEIEEQDWS 552


>gi|297617310|ref|YP_003702469.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145147|gb|ADI01904.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 523

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 177/454 (38%), Gaps = 50/454 (11%)

Query: 8   AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              +   +W  A+ L  +   K +++   +L    LR  +         + +K  A  GS
Sbjct: 5   NNEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADHKFSMAEKELAKKAKA--GS 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSST 123
              +      A    Y   +   S L       N+   +       +A  ED       T
Sbjct: 63  RRVIGKADYQARGVMYLPEQARYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPKT 122

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL+   L+  + K FS I +    V   V  N+YE+ +  F     +   +F TP  +
Sbjct: 123 YTRLDNDTLIA-LLKTFSEIPM---DVEGDVFGNVYEYFLGEFARSEGQRGGEFYTPTSL 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++                 + DP CG+GG    +   V +   +      +  +
Sbjct: 179 VKLIVEVIEPYRG-----------RILDPACGSGGMFVQSARFVQNHKKN--PSSEISIY 225

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302
           GQE   ET  +C   + +  L  D         +Q +T  +++     RF + ++NPPF 
Sbjct: 226 GQEKVAETVRLCKMNLAVHGLSGDI--------RQANTYYENVHNCIGRFDFVMANPPFN 277

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  D V+KE    +  R+  GLP + + + +++    + L    N  GRA  V+++
Sbjct: 278 V------DGVDKEKIKDD-PRYPFGLPTVDNANYIWIQEFYSAL----NDTGRAGFVMAN 326

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGK 421
           S      A   E EIR+ L+++ +++ ++ +  + F+   +   LW     K + ER  K
Sbjct: 327 SA---SDARGSELEIRKKLIQDRVVDVMITIGPNFFYTVTLPCTLWFFDKGKRQTERGNK 383

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           V  I+A +++  +    +  R    +Q   I +I
Sbjct: 384 VLFIDARNIYRQV---DRAHREFTPEQIEFIANI 414


>gi|126434842|ref|YP_001070533.1| N-6 DNA methylase [Mycobacterium sp. JLS]
 gi|126234642|gb|ABN98042.1| N-6 DNA methylase [Mycobacterium sp. JLS]
          Length = 316

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 15/299 (5%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           A + AN IWK AE L G ++   +G VILPFT+LRRL+C LEPT+  V  +Y     + +
Sbjct: 2   AQTNANLIWKIAELLRGPYQPNQYGDVILPFTILRRLDCILEPTKDEVLAEYAKISATKV 61

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           D    +K      FYNTS ++ + L        +NL  YI  FS N + +F+ F     I
Sbjct: 62  DPAVMLKAKFKLPFYNTSRWTFAALVGDPEGVADNLIDYIERFSPNVRDVFDGFKMVDLI 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           A L K+  LY I K F+ ++LHP+ V +  M  I+E LIR+F    +  A D  TPR+V+
Sbjct: 122 ADLAKSDRLYLIVKEFAAVDLHPNVVTNHDMGYIFEELIRKFAESNNAQAGDHFTPREVI 181

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   +L    D    + PG +RT+YDP  GTGG L+ A +H+ +     +     V +G
Sbjct: 182 ALMVDILFHAQDDALTK-PGTVRTIYDPAAGTGGMLSTAHDHLIEMNPKARP----VLYG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           Q++ P ++A+C + M+++  + D       NI  G TL+ D F  K F + LSNPPF K
Sbjct: 237 QDINPRSYAMCKSDMIVKGQDVD-------NIYLGDTLTDDGFRTKTFDFLLSNPPFRK 288


>gi|329575569|gb|EGG57106.1| putative type I restriction-modification system, M subunit
           [Enterococcus faecalis TX1467]
          Length = 357

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 160/374 (42%), Gaps = 40/374 (10%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE LI +F SE  + A +F TP  V  +    +    +         + +++DPT
Sbjct: 1   MIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARSVALGQED------KKLFSVFDPT 54

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T       +++  +E++      
Sbjct: 55  MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNHAKMNLILHGVEAE-----D 102

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+  KW  D   ++    +    R+G  L   
Sbjct: 103 MNLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLD----DSRFNRYGK-LAPK 157

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 158 SKADFAFLLHGYYHLK----DSGTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 210

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL   +       V  I+A+  +T  +N    +  +  +   +
Sbjct: 211 GMPANLFFGTSIPTTVIILKKNRDNR---DVLFIDASKEFTKGKN----QNKLAPEHIDK 263

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+  Y+ R++  K++ +  +         +  P  +    ++  +  +  +   +  +  
Sbjct: 264 IVSTYIERQDVEKYAHVATFEEIVENDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQE 323

Query: 511 HQSFWLDILKPMMQ 524
            +    ++L  +  
Sbjct: 324 IKKVEAELLAMLDD 337


>gi|295090547|emb|CBK76654.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 471

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 174/502 (34%), Gaps = 49/502 (9%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L    +       +  +       +   F       F                 
Sbjct: 1   MLFIKYLSDIDKEDIQC--KNNVCLSEQESNHVYFTIDNQPVFDYLYNNRNDMEIGNTIN 58

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVP-DR 153
             L       S     + +   F+         EK  +L  + + F+ ++L P  +    
Sbjct: 59  MVLSDVGKRNSGMVGHVLQGISFNDQGDLGETEEKNEVLRNLLEKFNCLDLRPSQLEFTD 118

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++   +E+++    S   +   +  TP+ V  L   L+           P     +YDPT
Sbjct: 119 IVGEAFEYMVAMLASNDRKRGAESFTPKQVCELLAFLV----------QPKEDDRIYDPT 168

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+GG L      V    +          +GQE+  ET A+C+  M +  +       + 
Sbjct: 169 CGSGGLLLQVYKKVPGGKA--------SIYGQEINAETWAICMMNMFLHGIN---EAQIW 217

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------GELGR 323
           K     +  +       +F   ++N PF           + +  N              R
Sbjct: 218 KGDTLSNPKNIQNDKLMKFQVVVANLPFSLNQWDRGFLYKVDVDNQIKKKMSAELDPYHR 277

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F  G+P  S G   F++H+   L+      GR A+VL    LF G +   E  IRR ++E
Sbjct: 278 FDLGVPPASKGDYAFILHMLASLD---EKNGRMAVVLPHGVLFRGAS---EGNIRRQIVE 331

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            +L++ ++ LP +LF+ T+I   + I    +T+     +  I+A+        +GK   I
Sbjct: 332 MNLLDTVIGLPANLFYGTSIPVCVLIFKKNRTDR---DILFIDAS--GNENIEKGKNHNI 386

Query: 444 INDDQRRQILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D    +I+  Y++R+N  K+S +  +         +     +    D   +  +E   
Sbjct: 387 LQDSAITRIVRTYMARQNENKYSYIASFDEIKGNDFNLSIARYVKNFEDDEKVNIIEVKN 446

Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524
               +          I K + +
Sbjct: 447 AISNIEIELDKVQSQIRKYLEE 468


>gi|268600937|ref|ZP_06135104.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae PID18]
 gi|268683951|ref|ZP_06150813.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae SK-92-679]
 gi|268585068|gb|EEZ49744.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae PID18]
 gi|268624235|gb|EEZ56635.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae SK-92-679]
          Length = 401

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 164/406 (40%), Gaps = 54/406 (13%)

Query: 111 AKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRF 166
            K +F+DFD +S+       +K   L  + K  + ++  + +     +  + YE+LI  +
Sbjct: 15  IKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAYEYLISNY 74

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  L  A   
Sbjct: 75  AANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLLLQAKKQ 126

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
             +              GQE+   T+ +    M +  +  +       +I+ G TL+   
Sbjct: 127 FDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELGDTLTNPK 175

Query: 287 FTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLA 343
               K F   +SNPP+   W    D            RF P   L   S     F++H  
Sbjct: 176 LKDSKPFDAVVSNPPYSIDWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFILHAL 230

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +LF+ T I
Sbjct: 231 NYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNLFYGTCI 283

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           A  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++  + +  
Sbjct: 284 AVNILVLSKHKDNT---DIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLFADKAD-- 334

Query: 464 FSRMLDY------RTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
              +         +  GY  + V   +      +   + +L A+I+
Sbjct: 335 VPHIAQNAAQQTVKDNGY-NLAVSSYVEAEDTREVIDIRQLNAEIS 379


>gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
          Length = 610

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 108/512 (21%), Positives = 193/512 (37%), Gaps = 74/512 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------L 60
           +   +   +W  A  + G+ +   F   +LP   L+RL    +     + E+Y      L
Sbjct: 94  TTKPMEQMLWDAACSIRGEKEAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATAL 153

Query: 61  AFGGSNIDLESFVKVAGYSFYNTS---EYSLST------LGSTNTRNNLESYIAS---FS 108
               S+  L  F       +   S    +              +   +L   + +    +
Sbjct: 154 EIAESDHSLLRFYLPPEARWTVISGREPFDWPRDVQGRSTAPRDIGEHLTRAVRAVVKHN 213

Query: 109 DNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIR 164
            +   + +  DF       R      L  + + FS     L    V    +   YE+L+R
Sbjct: 214 PSLSGVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLR 273

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F     + A +F TP +V  L   +L           P    T +D  CG+ G L    
Sbjct: 274 KFAEGSGQSAGEFFTPTEVGFLMAHIL----------RPKPGETCHDYACGSAGLLIKLQ 323

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +     ++P  L   GQEL+ E++AV     +I  +E +  R        G T+  
Sbjct: 324 LVARELDPTSRVP--LKLSGQELQAESYAVAQMNAIIHDMEVELAR--------GDTMIN 373

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLF 338
             F       ++    ++NP + + +  D         +    RF   G      G   +
Sbjct: 374 PKFRNADGSIRQHDIVVANPMWNQSFAPDI------FAHDPFDRFRTAGGITSGKGDWAW 427

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPT 395
           L H    +    N  GRAA+VL +  +  G     E +   IR+W +E DLI+ ++ LP 
Sbjct: 428 LQHTLACM----NDHGRAAVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILLPE 483

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T  A  + +L+ RK   R+GK+ L+NA+  ++  R +      + ++  R +  +
Sbjct: 484 NLFYNTTAAGVIVVLNKRKPAARKGKIVLLNASRHFSKGRPK----NYLPEEDLRPLAAM 539

Query: 456 YVSRE--NGKFSRM-------LDYRTFGYRRI 478
           Y+  E  +G+ + +        DY     R I
Sbjct: 540 YLKGEPVDGELAVITKQQAEEADYNLSPGRWI 571


>gi|496158|gb|AAA65633.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis]
          Length = 520

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 111/556 (19%), Positives = 204/556 (36%), Gaps = 74/556 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
           ++  L   + K  + L    + T++   I+ F   + L    E      +E   Y+ +  
Sbjct: 3   NSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYSE 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYIAS----------- 106
            + + E F K+      N  ++ L       + +   N   N+   I             
Sbjct: 63  FDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINSE 122

Query: 107 FSDNAKAIFED----FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +D  K  F+D     DFS+        EK   +  I K  + + L  D V      N Y
Sbjct: 123 LNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIKEINTLNLSMDEV--DHFGNTY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+  F S+  + A +F TP  V  L   ++    + + K         YDP CG+G  
Sbjct: 181 EYLLSEFASDTGKKAGEFYTPSKVSELLVKIVSHGKNKINKA--------YDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L    N V               +GQE++  T+ +     ++R +          +++ G
Sbjct: 233 LIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSK-----LDLRSG 278

Query: 280 STLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL   L   +   F   ++NPPF +KW   +     E          P L   S     
Sbjct: 279 DTLINPLHIEEEGSFDCIVANPPFSQKWNPTQ-----ELSKDRRYNSYPSLAPKSYADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL H+           G  A V S   L   ++   E +IR+++++ + I+ I+ LP +L
Sbjct: 334 FLQHMLFH---VNKDNGIIASVFSLGILSR-KSPKAEEDIRKYIIDKNYIDTIIFLPPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I + + +    K    + ++ +INAT  + +     KK+  ++D+   +I   + 
Sbjct: 390 FYNTSIESCIIVARKNKPTNDK-RIFMINATKEFQN----AKKQNTLSDENINRIFSAWK 444

Query: 458 S-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA------RLEADITWRKLSPL 510
             RE   FS+ + Y         +          D+            E      +L   
Sbjct: 445 EKREEENFSKYISYEDIVKNEYSLSMRFYDLDNFDEESEDIDIDFVESEIVKINEELLKY 504

Query: 511 HQSFWLDILKPMMQQI 526
              F  ++ + + ++ 
Sbjct: 505 ENEFKKNLNEFLNKKN 520


>gi|15828904|ref|NP_326264.1| restriction modification enzyme subunit M2 [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089847|emb|CAC13606.1| RESTRICTION MODIFICATION ENZYME SUBUNIT M2 [Mycoplasma pulmonis]
          Length = 520

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 111/556 (19%), Positives = 204/556 (36%), Gaps = 74/556 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
           ++  L   + K  + L    + T++   I+ F   + L    E      +E   Y+ +  
Sbjct: 3   NSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYSE 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYIAS----------- 106
            + + E F K+      N  ++ L       + +   N   N+   I             
Sbjct: 63  FDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINSE 122

Query: 107 FSDNAKAIFED----FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +D  K  F+D     DFS+        EK   +  I K  + + L  D V      N Y
Sbjct: 123 LNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIKEINTLNLSMDEV--DHFGNTY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+  F S+  + A +F TP  V  L   ++    + + K         YDP CG+G  
Sbjct: 181 EYLLSEFASDTGKKAGEFYTPSKVAELLVKIVSHGKNKINKA--------YDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L    N V               +GQE++  T+ +     ++R +          +++ G
Sbjct: 233 LIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSK-----LDLRSG 278

Query: 280 STLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL   L       F   ++NPPF +KW   ++  +    N       P L   S     
Sbjct: 279 DTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL H+           G  A V S   L   ++   E +IR+++++ + I+ I+ LP +L
Sbjct: 334 FLQHMLFH---VNKDNGIIASVFSLGILSR-KSPKAEEDIRKYIIDKNYIDTIIFLPPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T I + + +    K    + ++ +INAT  + +     KK+  ++D+   +I   + 
Sbjct: 390 FYNTGIESCIIVARKNKPTNDK-RIFMINATKEFQN----AKKQNTLSDENINRIFSAWK 444

Query: 458 S-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA------RLEADITWRKLSPL 510
             RE   FS+ + Y         +          D+            E      +L   
Sbjct: 445 EKREEENFSKYISYEDIVKNEYSLSMRFYDLDNFDEESEDIDIDFVESEIVKINEELLKY 504

Query: 511 HQSFWLDILKPMMQQI 526
              F  ++ + + ++ 
Sbjct: 505 ENEFKKNLNEFLNKKN 520


>gi|91775530|ref|YP_545286.1| XRE family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91709517|gb|ABE49445.1| transcriptional regulator, XRE family [Methylobacillus flagellatus
           KT]
          Length = 519

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 110/508 (21%), Positives = 186/508 (36%), Gaps = 74/508 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFGG 64
           +   +W  A  + G+     F   +LP   L+RL    +     + E+Y      L    
Sbjct: 1   MEQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATALEIAE 60

Query: 65  SNIDLESFVKVA---------GYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAK 112
           S+  L  F               SF    +         +   +L   + +    +    
Sbjct: 61  SDHSLLRFYLPPEARWAVISGRESFDWPLDDRGRPTAPRDIGEHLTKAVRAVVKQNPTLS 120

Query: 113 AIFEDFDF--SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGS 168
            + +  DF       R      L  + + FS     L    V    +   YE+L+R+F  
Sbjct: 121 GVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAE 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   +L           P    T +D  CG+ G L        
Sbjct: 181 GSGQSAGEFFTPTEVGFLMAHIL----------RPKPGETCHDYACGSAGLLIKLQLVAR 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++P  L   GQEL+ E++AV     +I  +E +  R        G T+    F 
Sbjct: 231 ELDPTSRVP--LKLSGQELQAESYAVAQMNAIIHDMEVELAR--------GDTMINPKFR 280

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHL 342
                 +     ++NP + + +  D         N    RF   G      G   +L H 
Sbjct: 281 EASGKIRGHDIVVANPMWNQPFAADL------FANDPFDRFRTAGGITSGKGDWAWLQHT 334

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLFF 399
              +    N  GRAA+VL +  +  G     E +   IR+W +E DLI+ ++ LP +LF+
Sbjct: 335 LACM----NDHGRAAVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILLPENLFY 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T  A  + +LS RK   R+GK+ L+NA+  +   R +      + ++  R +  +Y+  
Sbjct: 391 NTTAAGVIVVLSRRKPAARKGKIVLLNASRRFKKGRPK----NYLPEEDIRPLAAMYLKG 446

Query: 460 E---------NGKFSRMLDYRTFGYRRI 478
           E           + +R  DY     R +
Sbjct: 447 EPVEGELAVITTEQAREADYNLSPSRWV 474


>gi|325108024|ref|YP_004269092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
 gi|324968292|gb|ADY59070.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
          Length = 524

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 110/572 (19%), Positives = 206/572 (36%), Gaps = 57/572 (9%)

Query: 6   GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +     +W+ A++     D K +++   +L    LR  +       +   +K    G
Sbjct: 3   NNHSDTEKRLWEAADEFRANSDLKSSEYSVPVLGLIFLRYADYRF----TQAEKKLEGQG 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FS 121
                +      A    Y  SE   S L +     N+  +I       +A  E       
Sbjct: 59  SGRRQIGKADYQAEGVMYLPSEARFSHLLALPEGENIGKHINEAMKAIEAENEVLKGVLP 118

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            T  R+E   L+  + KNFS IE+  +         IYE+ +  F     +   +F TP 
Sbjct: 119 KTFNRIENTILVS-LLKNFSQIEMDDEG---DKFGKIYEYFLGNFARAEGQKGGEFFTPT 174

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   ++                 ++DP+CG+GG    + + +       K    + 
Sbjct: 175 SLVKLIVEIIEPY-----------HGRIFDPSCGSGGMFAQSADFIKAHNK--KPADEIS 221

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPP 300
            +GQE   ET  +C+  M +  L  D         + G++  +D+   + RF + ++NPP
Sbjct: 222 CYGQERVAETRQLCMMNMAVHALSGDI--------RLGNSYYEDMHESQGRFDFVMANPP 273

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F        D V+K+    +  RF  G+P+  + + L++    + L    N  GRA  V+
Sbjct: 274 FNV------DKVDKDRLKDD-PRFPFGMPRNDNANYLWIELFYSAL----NETGRAGFVM 322

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERR 419
           ++S      A   E EIR+ LL +  ++ +VA+  + F+   +   LW     K   +R+
Sbjct: 323 ANSA---ADARQSEQEIRKKLLRSHAVDVMVAIGPNFFYTVTLPCTLWFFDKGKQNTDRK 379

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
            KV  I+A   +  +    +K      +    I+ +Y   EN +     D    G     
Sbjct: 380 DKVLFIDARHTFRQVDRAHRKFSPKQIEFLANIVRLYRG-ENPESIAGEDEEHPG----- 433

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
                 +    +    A +        L  + +  W       +           F +  
Sbjct: 434 --DEPDLKATFENLEYADVPGLCKVATLDEIEEQGWSLNPGRYVGVADREEDDFDFAERL 491

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
            + NE  T+    ++       +   +    A
Sbjct: 492 EELNEELTVLNSEARELEDRIAHNVAQLLEEA 523


>gi|313678340|ref|YP_004056080.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
 gi|312950090|gb|ADR24685.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
          Length = 892

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 131/673 (19%), Positives = 247/673 (36%), Gaps = 97/673 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL--------------ECALEPTR 52
           +   L + IW  A  L    +  ++   +L     + L                 L+   
Sbjct: 6   TKEKLGSKIWDAANQLRDKLEPHEYKDYVLGLVFYKFLCEKQTNYLIKNWITSDQLKYLD 65

Query: 53  SAVREK------------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-- 98
           S   +             Y +   + +D +         F + S    S L + N  N  
Sbjct: 66  SKYLDNESNFNAIVSGDAYKSDYENLVDAKKDCIDENGYFIDYSNLFSSWLENKNEFNIQ 125

Query: 99  ----NLESYIASFSDNAKAIFEDF--DFSSTIARL--EKAGLLYKICKNFSGIELHPDTV 150
                  ++  S +D  K++F+D    F   +++L  +      KI      I   P T 
Sbjct: 126 KFQLAFNNFNNSVNDEHKSLFKDLFVKFERDLSKLGSDTNEQTKKISSLLDIINDIPSTN 185

Query: 151 PD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            D  V+  IYE+LI RF S   + A +F TP  V  L + ++              +  +
Sbjct: 186 QDYDVLGYIYEYLIARFASSAGKKAGEFYTPHKVSELMSKIIAYHLKD------REVIKV 239

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L    +       ++     +  + QEL+ E   +    ++++ +     
Sbjct: 240 YDPTSGSGSLLITIGHEFK---KYNNGDSPVSYYAQELKAEVFNLTRMNLIMKNISP--- 293

Query: 270 RDLSKNIQQGSTLSKDL--FTGKRF--------HYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                + + G TL +D   F    F           +SNPP+ +KW   + +++  +   
Sbjct: 294 --TEIHARNGDTLEQDWPMFEDNDFSSYKHLSVDAVVSNPPYSQKWNSKEHSLDPRYVE- 350

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                  G+   S     FL+H            G  AIVL    LF G +   E +IR+
Sbjct: 351 ------YGIAPESKADYAFLLHDLYH----VQPDGIMAIVLPHGVLFRGNS---EGQIRK 397

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L++   I+AI+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+      G 
Sbjct: 398 NLIQKQQIDAIIGLPVNMFYGTEIPTIIMILKKHRSEK---DILFVDASKLYVK----GD 450

Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLA 496
           K+        ++I D+   R E   FSR +           + + R +      ++  L 
Sbjct: 451 KKNEFTKSHVKKIADVVNHRIEIENFSRRVSLDEIVQNDYNLNISRYIDNFKRQEQYDLY 510

Query: 497 RL-EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
            +    I+  +L+ L + F L     +  +++       +  +  K +   T+  + S +
Sbjct: 511 SIMYGGISREELAKLDKFFGLFT--GLKDKLFKLNDNNYYELKIPKEDINSTINGERSVT 568

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY-ENVPYLESIQDYFVREV-SPHVPD 613
                       D + +        ++      E+ + V     + DY    + S  + D
Sbjct: 569 EYKDSF------DKKGEKFLKFFKNFVKSVEEIEHVDLVQLESVLSDYIFENMNSIPLVD 622

Query: 614 AY-IDKIFIDEKD 625
           AY I +IF++  D
Sbjct: 623 AYDIYQIFVNNLD 635


>gi|2581810|gb|AAC25972.1| N6 adenine methylation (M) subunit homolog [Mycoplasma pulmonis]
          Length = 520

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 109/556 (19%), Positives = 203/556 (36%), Gaps = 74/556 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
           ++  L   + K  + L    + T++   ++ F   + L    E      +E   Y+ +  
Sbjct: 3   NSKELIAVVKKICDQLRSKMEVTEYRDYVMGFLFFKYLSEQSEKNFEEFKERVDYIKYSE 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYIAS----------- 106
            + + E F K+      N  ++ L       + +   N   N+   I             
Sbjct: 63  FDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINSE 122

Query: 107 FSDNAKAIFED----FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +D  K  F+D     DFS+        EK   +  I +  + + L  D V      N Y
Sbjct: 123 LNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIEEINTLNLSMDEV--DHFGNTY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+  F S+  + A +F TP  V  L   ++    + + K         YDP CG+G  
Sbjct: 181 EYLLSEFASDAGKKAGEFYTPSKVAELLVKIVSHGKNKINKA--------YDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L    N V               +GQE++  T+ +     ++R +          +++ G
Sbjct: 233 LIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSK-----LDLRSG 278

Query: 280 STLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL   L       F   ++NPPF +KW   ++  +    N       P L   S     
Sbjct: 279 DTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL H+           G  A V S   L    +   E +IR+++++ + I+ I+ LP +L
Sbjct: 334 FLQHMLFH---VNKDNGIIASVFSLGILSR-ISPKAEEDIRKYIIDKNYIDTIIFLPPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T I + + +    K    + ++ +INAT  + +     KK+  ++D+   +I   + 
Sbjct: 390 FYNTGIESCIIVARKNKPTNDK-RIFMINATKEFQN----AKKQNTLSDENINRIFSAWK 444

Query: 458 S-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA------RLEADITWRKLSPL 510
             RE   FS+ + Y         +          D+            E      +L   
Sbjct: 445 EKREEENFSKYISYEDIVKNEYSLSMRFYDLDNFDEESEDIDIDFVESEIVKINEELLKY 504

Query: 511 HQSFWLDILKPMMQQI 526
              F  ++ + + ++ 
Sbjct: 505 ENEFKKNLNEFLNKKN 520


>gi|15829149|ref|NP_326509.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis UAB
           CTIP]
 gi|14090093|emb|CAC13851.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M1 [Mycoplasma pulmonis]
          Length = 520

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/556 (19%), Positives = 205/556 (36%), Gaps = 74/556 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
           ++  L   + K  + L    + T++   I+ F   + L    E      +E   Y+ +  
Sbjct: 3   NSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYSE 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYIAS----------- 106
            + + E F K+      N  ++ L       + +   N   N+   I             
Sbjct: 63  FDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINSE 122

Query: 107 FSDNAKAIFED----FDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +D  K  F+D     DFS+        EK   +  I K  + + L  D V      N Y
Sbjct: 123 LNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIKEINTLNLSMDEV--DHFGNTY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+  F S+  + A +F TP  V  L   ++    + + K         YDP CG+G  
Sbjct: 181 EYLLSEFASDTGKKAGEFYTPSKVAELLVKIVSHGKNKINKA--------YDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L    N V               +GQE++  T+ +     ++R +          +++ G
Sbjct: 233 LIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSK-----LDLRSG 278

Query: 280 STLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL   L   +   F   ++NPPF +KW   ++  +    N       P L   S     
Sbjct: 279 DTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL H+           G  A V S   L   +    E +IR+++++ + I+ I+ LP +L
Sbjct: 334 FLQHMLFH---VNKDNGIIASVFSLGILSR-KNPKAEEDIRKYIVDENYIDTIIFLPPNL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I + + +    K    + ++ +INAT  + +     KK+  ++D+   +I   + 
Sbjct: 390 FYNTSIESCIIVARKNKPTNDK-RIFMINATKEFQN----AKKQNTLSDENINRIFSAWK 444

Query: 458 S-RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA------RLEADITWRKLSPL 510
             RE   FS+ + Y         +          D+            E      +L   
Sbjct: 445 EKREEENFSKYISYEDIVKNEYSLSMRFYDLDNFDEESEDIDIDFVESEIVKINEELLKY 504

Query: 511 HQSFWLDILKPMMQQI 526
              F  ++ + + ++ 
Sbjct: 505 ENEFKKNLNEFLNKKN 520


>gi|145641328|ref|ZP_01796907.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
 gi|145273871|gb|EDK13738.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 22.4-21]
          Length = 357

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 148/372 (39%), Gaps = 46/372 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ ++YE+ + RF     +    + TP+ +V L   +L           P     +YDP
Sbjct: 7   DILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML----------EPYSG-RVYDP 55

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D     
Sbjct: 56  AMGSGGFFVQTERFIT---AHQGNINNVSIYGQESNPTTWKLAAMNMAIRGIDYD----- 107

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                   + ++     K+  + ++NP F  K   ++   +         R+  G+P   
Sbjct: 108 -FGKYNADSFTQPQHIDKKMDFIMANPHFNDKDWWNESLADD-------PRWAYGIPPKG 159

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+   L    +  GR   VL++  + + +  S E EIR+ ++E DL+EA+VA
Sbjct: 160 NANYAWIQHMIYHL----SPNGRMGFVLANGSMSSSQTNS-EIEIRKAIIEADLVEAMVA 214

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF    ++  +W L+  K  +R+G+V  I+A  +      + +  R    D   +I
Sbjct: 215 LPDKLFTNVELSACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTADDIAKI 269

Query: 453 LDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
            D + + +          F +             VL P R     ++       A+   +
Sbjct: 270 ADTFHTWQKSDGYENQAAFCKSATLEEIKDNDF-VLTPGRYVGTAEQEDDGVPFAEK-MQ 327

Query: 506 KLSPLHQSFWLD 517
            L+ L +  +  
Sbjct: 328 NLTALLKEQFAK 339


>gi|224417842|ref|ZP_03655848.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253827182|ref|ZP_04870067.1| type I restriction-modification system methyltransferase subunit
           [Helicobacter canadensis MIT 98-5491]
 gi|313141384|ref|ZP_07803577.1| type I restriction-modification system [Helicobacter canadensis MIT
           98-5491]
 gi|253510588|gb|EES89247.1| type I restriction-modification system methyltransferase subunit
           [Helicobacter canadensis MIT 98-5491]
 gi|313130415|gb|EFR48032.1| type I restriction-modification system [Helicobacter canadensis MIT
           98-5491]
          Length = 596

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/456 (20%), Positives = 171/456 (37%), Gaps = 47/456 (10%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
            Y  +    S L  T  R        SF    + +F + +  S       +     +C+ 
Sbjct: 165 IYELARTQNSQLLKTLQRGFKYIENESFESRFRGLFSEVNLDSDKLGKNYSERNILLCQV 224

Query: 140 FSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            + I       P+   ++ + YE+LI +F +   + A +F TP+ V  + + ++      
Sbjct: 225 ITEIAQGLSKFPNETDLLGDAYEYLIGQFAAGSGKKAGEFYTPQQVSTILSRIVSLDSQD 284

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                   ++ + D  CG+G  L +                I   +GQE    T+ +   
Sbjct: 285 PSTGKKSKLKNILDFACGSGSLLINVRKQF-------GANSIGQIYGQEKNITTYNLARM 337

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDK 309
            ML+  +     +D    I  G +L  D             +F   ++NPPF  +W+   
Sbjct: 338 NMLLHGV-----KDSEFQIHHGDSLLNDWNILNEMNPAKKMQFEVVVANPPFSYRWQP-- 390

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
               KE    +      GL   S     FL+H  + L    +  G  AI+L    LF   
Sbjct: 391 ----KEEMAEDFRFKNYGLAPKSAADFAFLLHGFHFL----SDDGTMAIILPHGVLFR-- 440

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
            G  E +IR  LLE+  I+AI+ LP +LFF T I   + +L   K   +   V +INA++
Sbjct: 441 -GGVEEKIRTKLLEDGNIDAIIGLPANLFFSTGIPVCVLVLKKCK---KYDDVLIINASE 496

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLRPLRMS 487
            +      GK++ I+  +   +I++ Y  R+    K+SR +  +        +       
Sbjct: 497 YFEK----GKRQNILLPEHIDKIIETYQYRKEDDKKYSRRVSMKEIKKNGYNLNI---SR 549

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           ++        ++ +  W +L  +         K   
Sbjct: 550 YVSTAPEEEIVDIEEVWDELEKIENEIKKAKAKHNE 585



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 8/143 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L + +W  A+ L G     DF   +L F  LR L    E       +K L      
Sbjct: 5   QQKKLGSTLWAIADKLRGAMNADDFRDYMLSFLFLRYLSDNYEEA----VKKELGSDYHK 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +LE     A    Y     ++    S +             D  K      DF     +
Sbjct: 61  SELEIQKNGANQDAYIDELKNIIIKHSNSLSPKELGLQEDEKDQEKIKKARQDFIDYNNK 120

Query: 127 LEKAGLLYK----ICKNFSGIEL 145
           +  +  +        +N   +++
Sbjct: 121 MLYSHNVIPLAVWYIRNLDQVDM 143


>gi|121608535|ref|YP_996342.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121553175|gb|ABM57324.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 519

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 182/481 (37%), Gaps = 65/481 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------LAFGG 64
           +   +W  A  + G+     F   +LP   L+RL    +   + + E Y      L    
Sbjct: 1   MEQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFDDEIARLAEAYGDRATALEITE 60

Query: 65  SNIDLESFVKVAGYSF-----YNTSEYSLSTLG----STNTRNNLESYIAS---FSDNAK 112
            +  L  F       +       T E+ L   G      +  ++L   + +    S    
Sbjct: 61  FDHGLLRFYLPPEARWAVLSGRETYEWPLDAQGRSTAPRDIGDHLTRAVRAVVKHSPTLA 120

Query: 113 AIFEDFDF--SSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGS 168
           ++ +  DF       R      L  + + FS     L    V    +   YE+L+R+F  
Sbjct: 121 SVIDMVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAE 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   +L           P    T +D  CG+ G L        
Sbjct: 181 GSGQSAGEFFTPTEVGFLMAHIL----------RPRPGETCHDYACGSAGLLIKLQLVAR 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++P  L   GQEL+ E++AV     +I  +E    R        G T+    F 
Sbjct: 231 ELDPTSRVP--LQLSGQELQAESYAVAQMNAIIHDMEVTLAR--------GDTMINPKFR 280

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHL 342
                 +R    ++NP + + +  D         N    RF   G      G   +L H 
Sbjct: 281 EANGKLRRHDVVVANPMWNQPFAPDL------FANDPFDRFRTAGGVTSGKGDWAWLQHT 334

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLFF 399
              L       GRAA+VL +  +  G     E +   IR+W ++ D I+ ++ LP +LF+
Sbjct: 335 LACLAA----DGRAAVVLDTGAVTRGSGSKNEDKERNIRKWFVDKDTIDGVILLPENLFY 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T  A  + +L+ RK+  R+GK+ L+NA+  +   R +      + ++  + +  +Y+  
Sbjct: 391 NTTAAGVIVVLNKRKSTARKGKITLLNASKHFRKGRPK----NYLPEEDIKPLAAMYLKG 446

Query: 460 E 460
           E
Sbjct: 447 E 447


>gi|306843200|ref|ZP_07475813.1| type I restriction-modification system, M subunit [Brucella sp.
           BO2]
 gi|306286610|gb|EFM58183.1| type I restriction-modification system, M subunit [Brucella sp.
           BO2]
          Length = 741

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 184/450 (40%), Gaps = 56/450 (12%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKN----FSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
            D DF++   RL K   +          F  ++   +    D ++ + YE+L+R F +E 
Sbjct: 20  PDNDFNNE-DRLGKGKAMVDTLTKLVGIFENLDFGKNRADGDDLLGDAYEYLMRHFATES 78

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP +V  +   ++    D           T+YDPTCG+G  L          
Sbjct: 79  GKSKGQFYTPAEVSRILAKVIGINKD------TKRDATVYDPTCGSGSLLLKV------- 125

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             + + P  L  +GQE E  T A+    M++   +SD          Q  TLS   +  K
Sbjct: 126 --NDEAPNGLSLYGQEKEQATVALARMNMILHGSDSDEL-------WQDDTLSAPHWRDK 176

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F + ++NPPF  K   +         + E  RF  G P   +G   FL+H+   
Sbjct: 177 NGKLRTFDFAVANPPFSLKSWSNGFT----PSDDEFERFEYGQPPEKNGDYAFLLHIIKS 232

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR A++L    LF G A   E++IRR L+    I+ I+ LP +LF+ T I  
Sbjct: 233 LK----STGRGAVILPHGVLFRGNA---EADIRRNLVRQGYIKGIIGLPANLFYGTGIPA 285

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKF 464
            + ++        R  + +I+A+  +    N+ +    +      +I+D++  +    ++
Sbjct: 286 CIIVIDKSTAGPER-PIFMIDASKGFVKDGNKNR----LRAQDIHKIVDVFNRQLVVDRY 340

Query: 465 SRMLDYRTFGYR---RIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILK 520
           SR++ Y     +    + + R +  S   D   L A L   I  R +  L    + D+  
Sbjct: 341 SRLVPYDEIAKKNDFNLNIPRYIDASEPEDIHDLDAHLNGGIPDRDIEALK--AYWDVFP 398

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
            + + ++  G    + K  I+S   K   +
Sbjct: 399 SLRKTLFADGARPGYAKALIESRAIKATIL 428


>gi|119471838|ref|ZP_01614171.1| N-6 DNA methylase [Alteromonadales bacterium TW-7]
 gi|119445328|gb|EAW26617.1| N-6 DNA methylase [Alteromonadales bacterium TW-7]
          Length = 698

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/544 (18%), Positives = 202/544 (37%), Gaps = 69/544 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T     L   +W  A++L    D K  ++   +L    L+  +       + +  ++  
Sbjct: 2   NTEQLKKLEKSLWSAADNLRANSDLKSNEYATPVLGLIFLKFADNKYSKVENEIVAEHAK 61

Query: 62  FGGSNIDLE-SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---SFSDNAKAIFED 117
             GS  +   S V +    FY         L +     ++   I       +  K   + 
Sbjct: 62  LKGSRREKPLSEVAIEKCGFYLPEHARYDYLLNRPEEEDMAKAIKRAMELVEEHKKELDG 121

Query: 118 FDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                    L +    L  ++ K FS I   P      ++  IYE  + +F     +G  
Sbjct: 122 ILPKDEYFALTRTDRTLPAQLLKTFSDI---PRDATGDILGKIYEFFLGKFALAEGQGGG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---- 231
            F TP  VV L   ++                T++DP CG+ G    +   + D      
Sbjct: 179 VFYTPTSVVRLMVEVIEPYKG-----------TVFDPACGSAGMFVQSQQFIEDHNEELD 227

Query: 232 --SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                     L  +GQE   +T  +    + +  L  + ++  S       +        
Sbjct: 228 LLGEKHDENKLFVYGQEKTLDTVKLAKMNIAVNGLRGEIKQANSYKENPFDSY------- 280

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFLM 340
           ++F Y L+NPPF        D VE + +  E G         +   G   + +G+ L++ 
Sbjct: 281 QKFDYVLANPPFNVDDVPVAD-VEDDIRFNEYGIPKKKTKAKKKDEGKETVPNGNYLWIN 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
             A  L+      GRAA+V+++S      A   E++IR+ L+EN+LI  ++ LP+++F+ 
Sbjct: 340 LFATSLK----EKGRAALVMANSA---SDARHSEADIRQTLIENNLIYGMLTLPSNMFYT 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL------- 453
             +   LW     K ++    +  I+A +++T +    +  R  + +Q   +        
Sbjct: 393 VTLPATLWFFDKDKQDD---NILFIDARNVFTQV---DRAHREFSPEQINNLAMISKLHK 446

Query: 454 ---DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-TWRKLSP 509
                +V   +  F + +D      ++++ +    +  + DK G   +   +  W++L+ 
Sbjct: 447 GKRREFVHLIDTYFEKGMDLLVENKKQVEPVSEQLLDVLDDKQGKIAVGGLVGQWKELNT 506

Query: 510 LHQS 513
           L + 
Sbjct: 507 LQKK 510


>gi|34764861|ref|ZP_00145228.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27885799|gb|EAA23174.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 353

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 158/376 (42%), Gaps = 42/376 (11%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T + L     + K        +YDP
Sbjct: 12  DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDP 63

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +      +         GQE+   T+ +C   M +  ++ D     
Sbjct: 64  ACGSGSLLLKFAKILGKNNVRNG------FFGQEINITTYNLCRINMFLHDIDFDK---- 113

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L 
Sbjct: 114 -FDIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQILIND-----SRFSPAGVLA 167

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ 
Sbjct: 168 PKSKADLAFIMHSLSWL----ASNGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDG 220

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+IAT + +L   K +    KV  I+A+  +  + N  K    + +   
Sbjct: 221 IIQLPDNLFYGTSIATCIMVLKKSKID---NKVLFIDASKEFVKVTNSNK----MTEKHI 273

Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
             I++ +  REN ++ S +++Y         +     +        +  +E +   +++ 
Sbjct: 274 DDIVEKFTKRENIEYISNLIEYEKIVEENYNLSVSTYVEKEDTSEKIDIVELNKEIQRIV 333

Query: 509 PLHQSFWLDILKPMMQ 524
              +    +I K + +
Sbjct: 334 AREEELRKEIDKIIAE 349


>gi|313892812|ref|ZP_07826393.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442743|gb|EFR61154.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 348

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 184/370 (49%), Gaps = 31/370 (8%)

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K   K      + +   E G     +P+ISDG +LFL++  +K++     G R A V ++
Sbjct: 3   KNGWKKDILDSRFNAYLEDGTQLMMIPRISDGQLLFLLNNVSKMKTDTALGSRIAEVHNA 62

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           S LF G AGSGES  RR+++ENDL+EAI+ALP ++F+ T + T++W+LSN+K + R+GK+
Sbjct: 63  SSLFTGDAGSGESNARRYMIENDLVEAIIALPDNMFYNTPLGTFIWVLSNKKEDRRKGKI 122

Query: 423 QLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT + + +R N GKK   ++ D R++I+ I++  E    SR+ D   FG+  + V 
Sbjct: 123 QLIDATAMKSPLRKNMGKKNCELSSDIRKEIIRIFMDMEESDVSRVFDNDEFGFWLVTVE 182

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           R L++    D+         I         ++  +      +    P     +F K +  
Sbjct: 183 RSLKLRIYPDRK--------IPSSVFKKEEEAELVRRTLATLSDNVPLDDWSAFAKAT-- 232

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                    K   + +         K   A  V   +GE   D   TE     Y   I  
Sbjct: 233 ---------KLKAAILKKIRPYITEKSADAKTV---SGESDADLRTTEIIPFKYEGGIDQ 280

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           +   EV P+ PDA+ D+  I        ++GYE++F ++FY+    R++ +I  ELKG+E
Sbjct: 281 FMENEVHPYAPDAWYDEKNI--------KIGYELSFIKYFYKPMELRQMSEIVEELKGLE 332

Query: 662 AQIATLLEEM 671
           A    +L ++
Sbjct: 333 ADANGMLGDI 342


>gi|291320531|ref|YP_003515795.1| type I restriction modification system Hsdm modification
           (methylase) protein [Mycoplasma agalactiae]
 gi|290752866|emb|CBH40841.1| Modification (Methylase) protein of type Irestriction modification
           system HsdM [Mycoplasma agalactiae]
          Length = 892

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/667 (18%), Positives = 243/667 (36%), Gaps = 85/667 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
           +   L + IW  A+ L    +  ++   +L     + L         ++ + +  L +  
Sbjct: 6   TKEKLGSKIWDAADKLRAKLEPHEYKDYVLGLVFYKFLCEKQTDYLIKNWITKDQLKYLD 65

Query: 65  SNI------------------------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-- 98
           S                          D +         F + S    S L + N  N  
Sbjct: 66  SKYLDNIPNFSAFYTGNNLEGDYEIFKDAKKECIDENGYFIDYSNLFSSWLENKNEFNIQ 125

Query: 99  ----NLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKIC--KNFSGIELHPDTV 150
                  ++  S +D  K++F+D    F   +++L                 I   P T 
Sbjct: 126 KFQLAFNNFNNSVNDAYKSLFKDLLVKFERDLSKLGSDTNKQTEVISSLLDIINDIPSTN 185

Query: 151 PD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            D  V+  IYE+LI RF S   + A +F TP +V  L + ++              +  +
Sbjct: 186 QDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKD------REVIKV 239

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L    +       ++     +  + QEL+ E   +    ++++ +     
Sbjct: 240 YDPTSGSGSLLITIGHEFK---KYNNGDSPVSYYAQELKTEVFNLTRMNLIMKNISPTEI 296

Query: 270 RDLSKNIQQGSTLSKDLFTGKRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
              + +  +      +      +        +SNPP+ +KW   + +++  +        
Sbjct: 297 HARNGDTLEQDWPMFENNDFSSYKHLSVDAVVSNPPYSQKWNSKEHSLDPRYVE------ 350

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+   S     FL+H            G  AIVL    LF G +   E +IR+ L++ 
Sbjct: 351 -YGIAPESKADYAFLLHDLYH----VQPDGIMAIVLPHGVLFRGNS---EGQIRKNLIQK 402

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+ I+ LP ++F+ T I T + IL  R++E+    +  ++A+ L+      G K+   
Sbjct: 403 QQIDTIIGLPINMFYSTEIPTIIMILKKRRSEK---DILFVDASKLYVK----GDKKNKF 455

Query: 445 NDDQRRQILDIYVSR-ENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARL-EA 500
           +    ++I D+  +R E   FSR +           + + R +      +K  L  L   
Sbjct: 456 SKSHVKKIADVVNNRIEIENFSRRVSLDEIVQNDYNLNISRYIDNFKKQEKYDLYSLMHG 515

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
            I+  +L+ L + F  D+   +  +++       +  +    +   T+  + S +     
Sbjct: 516 GISRDELAKLDKFF--DLFTGLKDKLFKLNSNNYYELKIPNEDINSTINGEWSVTEYKKS 573

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS--PHVPDAYIDK 618
            +  G K  +       + E I   +L + E V     + DY    +   P V    I +
Sbjct: 574 FDKKGEKFLKFFKNFVKSVEQIEHVDLAQLETV-----LSDYIFENMDSIPLVNAYDIYQ 628

Query: 619 IFIDEKD 625
           IF++  D
Sbjct: 629 IFVNNFD 635


>gi|14520514|ref|NP_125989.1| type i restriction modification enzyme, subunit m [Pyrococcus
           abyssi GE5]
 gi|5457729|emb|CAB49220.1| hsdM type I restriction modification enzyme, subunit M [Pyrococcus
           abyssi GE5]
          Length = 623

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/542 (18%), Positives = 200/542 (36%), Gaps = 44/542 (8%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL- 60
           TE   S   L + +   A+ + G     D+  + L F   + +          + ++   
Sbjct: 113 TETKISRDRLISLLKAAADQIRGGL---DYKAL-LVFLFYKAISDRWMKMAQDLMKEGKT 168

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIF 115
              A+  +N    +         Y   E   S        N L        +  + K + 
Sbjct: 169 KTQAYILTNKRYYNLFDEDTGKLYTWHEVVKSRETIKEMANALIKISEMNEELADLKKLV 228

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E       I + +    L +I K F+ ++         ++ + YE ++  F  + ++   
Sbjct: 229 EVLGLIGFI-KEDNLHKLEEIVKIFNRVDF--AEFDSDILGDAYEWILSYFAPQKAKE-G 284

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   LL   D             + DP  G+GG L +A  +V +      
Sbjct: 285 EVYTPREVIRLLVELLDIED----------GSDILDPASGSGGMLIEAYRYVKEKLKKEG 334

Query: 236 I--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGK 290
               P ++ +GQEL   T A+    +++  ++     + + ++       +   +     
Sbjct: 335 FDEEPAIMLYGQELNEVTAALSKLNLILHGIQEFKIFEGADSLVNPQWEEELKRNGIEDG 394

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y ++NPP+ +    +    ++  K+     +  G          ++  +        
Sbjct: 395 KVDYVIANPPWNQDGYDETRLSDRRIKHI----YKYGYTSKQSADWAWVQLMLYY----- 445

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
               +  IVL +  LF G A   E  IR+ ++E+DLIEAI+ LP  LF+       + +L
Sbjct: 446 -ARRKVGIVLDTGALFRGGA---EKAIRQGIVEDDLIEAIILLPEKLFYNAAAPGIIMVL 501

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
           +  K EER+GK+  INA+  +     E +K   + D+  R+I+D Y    E   FSR++ 
Sbjct: 502 NPNKPEERKGKILFINASREFRK-HPEVRKLNQLADEHIRKIVDAYREFKEIEGFSRVVT 560

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                     +   L +    ++  +   +    ++++    +         +   +   
Sbjct: 561 LEEIRKNDYNLNVSLYVFPEDEREQIDLAKEFKEFKEIEKRERELVEKAKAYIEGILGAM 620

Query: 530 GW 531
             
Sbjct: 621 DN 622


>gi|85711477|ref|ZP_01042535.1| N-6 DNA methylase [Idiomarina baltica OS145]
 gi|85694629|gb|EAQ32569.1| N-6 DNA methylase [Idiomarina baltica OS145]
          Length = 520

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 98/452 (21%), Positives = 170/452 (37%), Gaps = 45/452 (9%)

Query: 12  ANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GSNID 68
           A  +W  A+ LW +   K  +F   +L    L+  +       SA  EK    G G    
Sbjct: 7   AKRLWAAADQLWANTGLKPAEFSAPVLGLIFLKYAD----KKYSAAEEKLGPVGSGGRRK 62

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIAR 126
           +     +A    +       S L S    +N+   I       +    D       T  R
Sbjct: 63  VSKDDYLAEGVIFLPETARFSHLLSLTEGDNIGKAINDAMKAIEDENPDLKGALPRTYTR 122

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LE   L  ++ K  + ++L  D         +YE+ +  F  +  +    F TP  +V L
Sbjct: 123 LENWVLQ-ELLKQLAPVDLSGDA-----FGKVYEYFLGNFALKEGQKGGVFYTPESIVKL 176

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P     ++DP CG+GG    + + V     H      +   G E
Sbjct: 177 IVEII----------EPYHG-RIFDPACGSGGMFVHSADFVERH--HKTAMDEISIFGTE 223

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +  T  +    + +  L  D R   +        + K+      F + ++NPPF     
Sbjct: 224 KDQTTVNLNKMNLAVHGLSGDVRVSNTYYEDPHGAVYKNG--DGFFDFVMANPPFNVS-- 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V+KE   G+  RF  G+PK  + + L++      L+      GRA  V+++S   
Sbjct: 280 ----GVDKERLEGD-PRFPFGVPKTDNANYLWIQLFYASLK----PTGRAGFVMANSA-- 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLI 425
            G A   E  +R+ L+E+  ++ IV++  + F+   +   LW     K+E ERR KV  I
Sbjct: 329 -GDARGSEQVVRQKLIESGAVDVIVSVGPNFFYTVTLPCTLWFFDRAKSETERRDKVLFI 387

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +A  ++  I    +       +    I+ +Y 
Sbjct: 388 DARHIYNQIDRAHRDWLPEQVEFLANIVRLYR 419


>gi|188532536|ref|YP_001906333.1| Type I restriction-modification system, M subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188027578|emb|CAO95425.1| Type I restriction-modification system, M subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 494

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 112/520 (21%), Positives = 190/520 (36%), Gaps = 62/520 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
                 I        G          I+    L+ +   +      + E  ++     + 
Sbjct: 8   KETKKIISDIFNIFRGRLDAIQCLDYIISLIFLKYISDLI----CDINEDRVSDNDLRLK 63

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----FEDFDFSSTI 124
                   G SFY+ S               L  Y  +   +        F D DF+S  
Sbjct: 64  ELLSNVPKGMSFYSISSEINHGGIGERINTALSCYDEAIFQSLYKCDSRIFSDIDFTSDR 123

Query: 125 ARLEKAGLLY--KICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +    +  ++   F+  E   +   D    +S I   L  +  SE      DF TP
Sbjct: 124 LGPARGRDAFLSELMHIFNSREFQFNYYNDGADRISLICSILFEKTASEAGLRGGDFYTP 183

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  L + L+          SP    ++YDP CGTG  L  A++ +     + +     
Sbjct: 184 HGVSALLSELV----------SPRAGDSIYDPACGTGSLLLSAVHKI----PYIEKCQNH 229

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYC 295
             +GQE+   +  +    M +  +        S  I+ G       F   +     F   
Sbjct: 230 NVYGQEIIKVSWNIAYINMFLHGV-------YSCKIKWGDVFQNPQFKNSKSELAKFDVV 282

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPF      +K+A+     +   GRF  G+P  S     F++H+   L+   +  GR
Sbjct: 283 LSNPPFSMSNWGNKEAL-----SDRFGRFAMGVPPQSKADYAFILHMIASLK---DDTGR 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+V+    LF    G+ E+ IR  L++ +L++A++ LP  LF  TNI+T + I    K 
Sbjct: 335 MAVVVPHGVLFR---GANEALIRMNLIKENLLDAVIGLPERLFLSTNISTAILIFRKNKM 391

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRML---DYR 471
           +     V  I++T L+ +     K R  I  +  ++IL  +  R++    S +    +  
Sbjct: 392 DS---NVLFIDSTILFEN----SKGRNYITGEHIKRILKAFHERQDVCNISHVACLSEIE 444

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
              Y  I + R ++    +    L  L  D     L+ LH
Sbjct: 445 HNDY-NINITRYVKRVEEIQDIDLYSL-IDKQEELLAELH 482


>gi|145631985|ref|ZP_01787737.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982369|gb|EDJ89949.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 338

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 146/354 (41%), Gaps = 44/354 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G
Sbjct: 1   GDAYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAG 52

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     +              GQE+   T+ +    M +  +  D       +
Sbjct: 53  SGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FD 101

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL    F   + F   +SNPP+  KW    D      +     RF P   L   S
Sbjct: 102 IALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPTLINDE-----RFAPAGVLAPKS 156

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ ++A++A
Sbjct: 157 KADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIA 209

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  K      + Q I+A+ L+ S  N      I+ ++   QI
Sbjct: 210 LAPNLFFGTSIAVNILVLSKHKPNT---QTQFIDASGLFKSATN----NNILEEEHIEQI 262

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADIT 503
           L ++  +E+    ++ + +           V   +      +   +  L A I 
Sbjct: 263 LKLFADKEDVPHLAKSISFEEIAQNDYNLAVSSYVEQKDTREVINIDELNAQIR 316


>gi|171920161|ref|ZP_02931556.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar
           1 str. ATCC 27813]
 gi|171902534|gb|EDT48823.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar
           1 str. ATCC 27813]
          Length = 476

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 197/488 (40%), Gaps = 58/488 (11%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES----------FVKVAGYSFY 81
             +I+    L+ +        +++++KY      +I  +S           +      + 
Sbjct: 1   MHIIIGIIFLKTISDKYNYAINSLKDKYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWN 60

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
             S ++  +             I + +   K +F     S  + +      L  + + F+
Sbjct: 61  YISGFTTDSSIGEKIDQAFLK-IENQNPRLKGLFNKQYNSPELDK----TRLGNVVRKFN 115

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             +       + ++  IYE+ +  F  +  +   +F TP+ VV L   +L          
Sbjct: 116 DYDFS--QFNEDLVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL---------- 163

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            P     +YDP CGTGG    A N++ +    +     LV +GQE + +T  +    +L+
Sbjct: 164 DPNDNIKMYDPACGTGGMFVQARNYLHEQNKDY---NKLVIYGQEYQSQTWKLAKINLLL 220

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                +   D+        T  +DL  G++F   ++NPPF  K    ++ +  E      
Sbjct: 221 NGFNEN---DIHLGRGSEDTFKEDLHKGQKFDIIVANPPFNLKKWYREELLNDE------ 271

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RF  G+P  ++ +  +L+H+ +KL    N  G+A ++L++  L    +   ES +R+ +
Sbjct: 272 -RFSWGMPPENNANYAWLLHIISKL----NSRGKAGVILANGSL--SSSNKEESLLRKKM 324

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E ++++AI++LP  LF+ T I+  +W  +  K  E    V  I A+ +      + KK 
Sbjct: 325 IEENIVDAIISLPDKLFYTTQISASIWFFNKNKENE---NVLFIEASKMGEL---KTKKL 378

Query: 442 RIINDDQRRQILDIYVSRENGK------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           R +  D   +I ++Y   E G+      F++             ++    + F  +    
Sbjct: 379 RFLTKDDILKIKNVYDRHEQGEDVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDH 438

Query: 496 ARLEADIT 503
            +L  +I 
Sbjct: 439 EQLNHEIK 446


>gi|240948006|ref|ZP_04752424.1| type I restriction-modification system methyltransferase subunit
           like protein [Actinobacillus minor NM305]
 gi|240297676|gb|EER48150.1| type I restriction-modification system methyltransferase subunit
           like protein [Actinobacillus minor NM305]
          Length = 533

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/516 (18%), Positives = 201/516 (38%), Gaps = 67/516 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDF-GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           SL   +      L G     +     ++    L+ +       R+ ++ +Y        +
Sbjct: 14  SLETVMMNCRNALRGKVGGNEKNRDTVMGLVFLKFVGDKFTARRAEIQAQY---PEIFWE 70

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKAIFEDFDFS 121
            E+F + +   FY +     S +    + +++        + I   +   K       ++
Sbjct: 71  NEAFYR-SENVFYLSEHARWSYIVENASSDDIAIKIDTAMADIEERNPPLKGALPQNFYA 129

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG--SEVSEGAEDFMT 179
           +     ++   L            H       ++  + E+ ++ F   S V +   +F T
Sbjct: 130 TLGIGKKEIKSLIDEINKLDNNRFHEK----DLIGRVQEYFLQVFAIDSGVGKEKGEFYT 185

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V L   L+   +            T+YDP CGTGG    ++  V +   + K    
Sbjct: 186 PSSIVELIAELIEPYNG-----------TVYDPCCGTGGMFVQSLKFVENHQGNRKN--- 231

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQE  P+T  +    + +R +  +            ST + D +   + +Y ++NP
Sbjct: 232 ISIVGQESNPDTWRLAKMNLALRGIAHNLGESAV------STFTHDQWKDLKVNYIMANP 285

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K  +D++ +  + +       G  +P  S+ +  +++H+ +KL+      G A  +
Sbjct: 286 PFNLKDWRDQNELTDDPRFA-----GYAVPPKSNANYAWILHMLSKLD---ETDGIAGFL 337

Query: 360 LSSSPLFNGRA---GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT- 415
           L++  L  G        E  IR+ L+END +EAI+ LP ++F+ T+I+  LWI++N K  
Sbjct: 338 LANGALNTGGDKPDTDTEYAIRKQLIENDKVEAIIVLPREMFYSTDISVTLWIVNNNKKQ 397

Query: 416 --------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---- 463
                     R+ ++  ++   L  +     KK   +   +  Q+ +IY + + GK    
Sbjct: 398 RSLNGRQLRNRQNEILFMDLRTL--NSHIYEKKYVQLTAQEISQVCEIYFNWQTGKNYQN 455

Query: 464 ---FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
              F + +   T   +   +     + F+    G+ 
Sbjct: 456 IPEFCQSVSVETIRSKNYSLAPSQYIEFVDKDLGID 491


>gi|328947117|ref|YP_004364454.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328447441|gb|AEB13157.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 580

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 95/481 (19%), Positives = 185/481 (38%), Gaps = 56/481 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+      +L + +W  A+ L          +G+ IL    LR  +   +  ++ +  +
Sbjct: 1   MTDS--ELKTLKDNLWHAADVLRAGAHLAANKYGQPILGLIFLRYADILYKQHKAEIEAE 58

Query: 59  YLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           Y    G+  +     + +    FY   E   +T+       N  + +    +  +   E 
Sbjct: 59  YNKSKGTRAEKSIKDISIKYCGFYLPPEAYYTTINDAPDDANKATLVKKAMETIERENEK 118

Query: 118 FD------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            D          +   E+  LL  I + F  I   P+ +   +   IYE  +  F  +  
Sbjct: 119 MDGVLPKEVYGQLVPEEEPELLSNIMRIFMDI---PENISVDLFGEIYEFFLGEFALQEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV     +L   +           + + DP CG+GG    A+  +    
Sbjct: 176 KDGGTFYTPATVVRYMVEVLQPQNGE---------KKILDPACGSGGMFVQAVRFMHRHN 226

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +G E EP+T  +    +L+  +  +     S      + +         
Sbjct: 227 KASDEVMKFRCYGVEKEPDTVKLAKMNLLLNNVRGEIVEANSFYSDPHNAVGN------- 279

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG----------RFGPGLPKISDGSMLFLMH 341
           F Y ++NPPF    E   D V+ + +    G          +       + + + L++ +
Sbjct: 280 FDYVMANPPFNVD-EVVYDKVKDDPRFNIYGVPKNKSKTAKKGSDKKETVPNANYLWISY 338

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
            A+ L    N  G+AA+V+++S      AG  E EIR+ ++E  +I  +V LP+++F   
Sbjct: 339 FASSL----NQTGKAALVMANSA---SDAGGSELEIRKKMIEEGIISQMVTLPSNMFSSV 391

Query: 402 NIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIY 456
            +   LW    +KT++  ++ K+  I+A  ++T +    +  R  +D+Q +    I  +Y
Sbjct: 392 TLPATLWFFDKQKTQDAQKKDKILFIDARSIFTQV---DRAHRKFSDEQIKNLGIITRLY 448

Query: 457 V 457
            
Sbjct: 449 N 449


>gi|313894016|ref|ZP_07827582.1| putative type I restriction-modification system, M subunit
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441580|gb|EFR60006.1| putative type I restriction-modification system, M subunit
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 579

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 181/485 (37%), Gaps = 65/485 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+       L + +W +A+ L          +G+ IL    LR  +   +  +  + E+
Sbjct: 1   MTDK--ELKQLKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEIIEEE 58

Query: 59  YLAFGGSNIDLE-SFVKVAGYSFYNT----SEYSLSTLGSTNTR---NNLESYIASFSDN 110
           Y    G  ++     + +    FY       ++        N           I + +  
Sbjct: 59  YNRLKGGRMEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIETENPK 118

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +    +  + +   E+  LL  I + F  I   P+     +   IYE+ +  F    
Sbjct: 119 MDGVLPK-EVYAQLVPEEEPELLSNIVRIFKDI---PENSTVDIFGEIYEYFLGNFALAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-LYDPTCGTGGFLTDAMNHVAD 229
            +    F TP  VV     +L          +P        DP CG+GG    A  ++ +
Sbjct: 175 GKDGGTFYTPATVVRYMVEVL----------NPQPGEKKFLDPACGSGGMFVQAARYMHN 224

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +          +G E EP+T  +    +L+  +  D  +  S         S      
Sbjct: 225 HNASESEQMKFRCYGVEKEPDTVKLAKMNLLLNNIRGDITQANSF-------YSDPYNAA 277

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISDGSM 336
            +F Y ++NPPF      D+  VEK   +     +G                  + + + 
Sbjct: 278 GQFDYVMANPPFNV----DEVVVEKVSDDVRFNTYGVPRNKSKSTKKKSDKKETVPNANY 333

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L++ + A  L    N  G+AA+V+++S      A   E +IR+ ++E  +I  +V LP++
Sbjct: 334 LWIGYFATAL----NENGKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTLPSN 386

Query: 397 LFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---I 452
           +F    +   LW    +K   +++ ++  I+A +++T +    +  R  +D+Q +    I
Sbjct: 387 MFSSVTLPATLWFFDKQKPNTDKKNEILFIDARNVFTQV---DRAHRKFSDEQIKNLGVI 443

Query: 453 LDIYV 457
             +Y 
Sbjct: 444 TKLYH 448


>gi|119357510|ref|YP_912154.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354859|gb|ABL65730.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 662

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 97/487 (19%), Positives = 167/487 (34%), Gaps = 88/487 (18%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           +E   + A+L   +W  A+ L  +   K  ++   +L    L   +      R+ +    
Sbjct: 7   SEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAK 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNTR---NNLESYIASFSDNAK 112
            +    +   +     A    Y + E      L+   + N     N     I   +    
Sbjct: 67  SSTRRGSRVDDPAAYHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLA 126

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +     +      L  + LL ++ K  S I   P ++       IYE+ +  F     +
Sbjct: 127 GVLPKTYY------LFDSPLLKQLLKKVSEI---PSSMDYDAFGRIYEYFLGEFAMSEGQ 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP  +V L T ++           P     + DP CG+GG    +   VA    
Sbjct: 178 GGGEFYTPVSIVRLLTEVI----------EPYHG-RILDPACGSGGMFVSSARFVAQHKQ 226

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      L  HG E   ET  +C   + +  LE       + N                F
Sbjct: 227 N--PSAELSIHGIEKTDETGRLCRLNLAVHGLEGRIMHGGNVNSYYDD----PHDATGNF 280

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELP 349
            + L+NPPF        +AV+KE     +G   RF  GLP+  + + L++    + L   
Sbjct: 281 DFVLANPPFNV------NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL--- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  GRA  V+++S      A S E EIRR L+E+  ++ +VA+  ++F+   +   LW 
Sbjct: 332 -NERGRAGFVMANSA---SDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWF 387

Query: 410 LSNRKTE-------------------------------------ERRGKVQLINATDLWT 432
               K                                        R   V  I+A  ++ 
Sbjct: 388 FDKAKARLSPPSSPALLPKVEGGEEDLPLSRRILTERDGEGNVPNRADTVLFIDARHIYR 447

Query: 433 SIRNEGK 439
            +    +
Sbjct: 448 QVDRAHR 454


>gi|48243660|gb|AAT40796.1| putative type I restriction-modification system methyltransferase
           protein [Haemophilus influenzae]
          Length = 398

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 131/405 (32%), Positives = 192/405 (47%), Gaps = 53/405 (13%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +      S  +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGL 328
           L+ D F G  F + LSNPP+GK W KD+  + K+       RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAG 371
           P+ SDG +LFLM + +K++ P +   G R A V + S LF G AG
Sbjct: 354 PRSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAG 398


>gi|330874480|gb|EGH08629.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 418

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 168/411 (40%), Gaps = 105/411 (25%)

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + S LF G AGSGES IRR L+ENDL++AI+ LP +LF+ T I TY+W+LS+ K  +RR
Sbjct: 2   HNGSSLFTGDAGSGESNIRRHLIENDLLDAIIQLPNNLFYNTGITTYIWLLSSNKPVQRR 61

Query: 420 GKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLDY 470
           GKVQLI+A+ L+  +R N G K      +    I   Y+           +G  +++ D 
Sbjct: 62  GKVQLIDASLLYRKLRKNLGNKNCEFAPEHIELITQTYLDVASLDRPAGGDGIAAQVFDN 121

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK------------------------ 506
           R FGY ++ + RP R         +  L  D   R+                        
Sbjct: 122 RDFGYHKVSIERPDRRKAQFSAERIETLRFDKALREPMQWIYQQWGEALYQDETLAKHEK 181

Query: 507 -----------------------LSPLHQSFWLDILKPMMQQIYPYGWAESF-----VKE 538
                                  L    +   L  +   + Q       + F     + +
Sbjct: 182 AILAWCEEQGLELNIKQRKKLLNLETWAKQALLVTVANYLMQAIGSDEYDDFNLFAKLVD 241

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----------------------- 575
            +     K + +K   S     +NA    D  A  V                        
Sbjct: 242 KVLKQLNKEVGIKLGASERNQVLNAVSWYDENAVKVLRKVEKFDRAELAALLERLDCIEA 301

Query: 576 ----------DVNGEWIP---DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
                     D  GEWI    +++L + E++P  +SI  +F  EV PHV +A+I+     
Sbjct: 302 DLVDFGYYPSDKAGEWITYESNSDLRDSESIPLADSIHHFFKAEVQPHVEEAWINL---- 357

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
               E  ++GYEI+FN++FY++QP R + ++  E+  +E Q   L+ E+  
Sbjct: 358 ----ESVKIGYEISFNKYFYKHQPLRSMDEVAREIVALEQQAEGLIAEILG 404


>gi|302346748|ref|YP_003815046.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302150375|gb|ADK96636.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 558

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/500 (18%), Positives = 196/500 (39%), Gaps = 64/500 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT  +     L   +W++A+ L          + + IL    LR  +   +  + A+   
Sbjct: 1   MT--STELKDLEGRLWQSADMLRAGAHLAANKYSQPILGLIFLRYADVLFKQHKEAIDTA 58

Query: 59  YLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDN 110
           Y  + G+ ++    +  ++  G+     + +        + +  L        I   +  
Sbjct: 59  YNEYKGTRMERSYKDIAIEKCGFFLPECAYFDYLNDAPDDAQKALLVKAAMEAIEHENPR 118

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +    +    +   E+  LL +I + F  I   P+ +   +   IYE+ +  F    
Sbjct: 119 MDGVLPK-EVYGQLVPEEEPELLSRIVRVFKDI---PENISIDIFGQIYEYFLGNFALAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G   F TP  VV     +L               +   DP CG+GG    A  ++   
Sbjct: 175 GQGGGAFYTPASVVQYMVEVLQPATGD---------KKFLDPACGSGGMFVQAARYMHRH 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            + ++       +G E EP+T  +    +L+  +  +        ++  S  S       
Sbjct: 226 NTSNEQMMNFRCYGVEKEPDTVKLAKMNLLLNNVRGEI-------MEANSFYSDPYNAVG 278

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-------------SDGSML 337
           +F Y ++NPPF      D+  VE+   +     +G    K               + + L
Sbjct: 279 QFDYVMANPPFNV----DEVVVERVTDDARFNTYGVPRNKTKSAKKASDKKETVPNANYL 334

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ + A  L    N  G+AA+V+++S      AG  E EIR+ ++E+ +I  +V LP+++
Sbjct: 335 WIGYFATAL----NEQGKAALVMANSA---SDAGGSELEIRKKMIEDGIISQMVTLPSNM 387

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILD 454
           F    +   LW  + ++   ++ ++  I+A +++T +    +  R  +D+Q +    I  
Sbjct: 388 FSTVTLPATLWFFNKKRP--KKDEILFIDARNIFTQV---DRAHRKFSDEQVKNLGIISR 442

Query: 455 IYVSRENGKFSRMLDYRTFG 474
           +Y    +  ++ + +Y+  G
Sbjct: 443 LYEGDSDAFWALVEEYKAEG 462


>gi|160893874|ref|ZP_02074656.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50]
 gi|156864461|gb|EDO57892.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50]
          Length = 338

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 139/356 (39%), Gaps = 45/356 (12%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F  +  +   +F TP  VV     +L                 +YDP CG+GG    + 
Sbjct: 1   MFAEQEGKRGGEFFTPSCVVRTLVEVLKPFKG-----------RVYDPCCGSGGMFVQSA 49

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +   H      +  +GQ+  P T  +    + IR +E D             T   
Sbjct: 50  KFIEN---HSGNISNISIYGQDSNPTTWKMAQMNLAIRGIEPD------LGTYAADTFLD 100

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R  Y ++NPPF               K  E  R+  G+P   + +  +L H+  
Sbjct: 101 DRHPTLRADYIMANPPFNLSDWG-------LDKLKEDQRWKYGIPPAGNANFAWLQHMIY 153

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       GR  +VL++  L +     GE EIR+ ++  DL+E IVA+PT LF+ T I 
Sbjct: 154 HLAPA----GRIGMVLANGSLSSQS--GGEGEIRKNIINADLVECIVAMPTQLFYTTQIP 207

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-- 462
             LW ++ +K +   G+   I+A  +   +    +K R + DD  ++I D Y +  +G  
Sbjct: 208 VSLWFINKQKKQP--GRTLFIDARKMGKMV---SRKLRELTDDDIKKISDTYEAFVDGTL 262

Query: 463 ----KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                +  + D      +   +L P R   I ++        +   R  S L + F
Sbjct: 263 ENVKGYCAVTDTAEIEKQDY-ILTPGRYVGIEEQEADDEPFEEKMDRLTSELAEMF 317


>gi|158522247|ref|YP_001530117.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511073|gb|ABW68040.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 528

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 166/474 (35%), Gaps = 56/474 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              +  +    +W  A+ L  +   K +++   +L    LR  +        A  ++   
Sbjct: 1   MNHNGNNTEARLWDAADQLRANSKLKSSEYSVPVLGLVFLRYADHKF----QAAAKELEG 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            GG           A    Y       S L       N+ + I +     +A  E+ D  
Sbjct: 57  KGGGRRKTGPADYQAKGVLYLPKAARFSALIQMPEGANIGTAINNAMRAIEA--ENPDLK 114

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +         + +    +   P  +       IYE+ +  F     +   +F TP 
Sbjct: 115 DVLPKTYNRFENTLLKELLKTMNSVPMDIEGDAFGRIYEYFLGNFARAEGQKGGEFFTPT 174

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   ++                 +YDP CG+GG    +   VA+   +      L 
Sbjct: 175 AIVRLIVGIIEPF-----------HGRIYDPACGSGGMFVQSARFVAEHKKNPGAE--LS 221

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
            +GQE   ET  +    + +  L  D         ++G+   +DL     +F + ++NPP
Sbjct: 222 VYGQEKVAETVRLGKMNLAVHGLSGDI--------REGNAYYEDLHRAVNKFDFVMANPP 273

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F        D V+K+    +  RF  GLP+  + + L++    + L    N  GR+  V+
Sbjct: 274 FNV------DRVDKDRLKDD-PRFPFGLPRTDNANYLWIQIFYSAL----NKTGRSGFVM 322

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE---- 416
           ++S      A   E +IRR L+E   ++ +VA+ ++ F+   +   LW     K      
Sbjct: 323 ANSA---SDARGSELDIRRQLIEAQAVDVMVAVGSNFFYTVTLPCTLWFFDKGKRNAVPG 379

Query: 417 --------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
                    R   V  I+A  L+  I    +       +    I  +Y   +  
Sbjct: 380 SAAPQCGISRADTVLFIDARHLYRQIDRAHRDWTPAQIEFLANIARLYRGEQTE 433


>gi|167752725|ref|ZP_02424852.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216]
 gi|167659794|gb|EDS03924.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216]
          Length = 529

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/482 (21%), Positives = 190/482 (39%), Gaps = 56/482 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  +L   ++     L G    TD   ++L    L+ +    +  +  +R + +  
Sbjct: 6   NKAVKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKEKIRHEIVEV 65

Query: 63  G---GSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASFSDNAK 112
                ++       +   Y     F+ T E     L     T      ++ I +  DN  
Sbjct: 66  QGIHDTDFIELQLSRPNQYMQDGVFFLTDETFWDKLILTSPTGMAIAFDTAIKTLDDNEP 125

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVS 171
            +              + G+L  +    + I+  P    D  +   +YE+ ++ F     
Sbjct: 126 KLKNALPQQIFTKTALEPGVLKSVVDEINKID--PQKFNDHDLIGRVYEYFLQAFSINTD 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  +V L  +L+   D            T+YDP CG+GG    A   +   G
Sbjct: 184 KEEGEFYTPHSIVELIASLIEPFDG-----------TVYDPCCGSGGMFVQAAKFIEAHG 232

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            + K   +   +GQE EP T+ +    + IR +            +  ST S D     +
Sbjct: 233 GNTKAVNV---YGQESEPATYRLAKMNLAIRGI------SYHLGDRAVSTFSDDQHKELK 283

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F Y ++NPPF  K   +    E + +       G G+P  S+ +  +++H+ NKL +   
Sbjct: 284 FDYIMANPPFNLKKYAEYGGFETDSRWQ-----GYGVPPTSNANYAWILHILNKLNVSR- 337

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L +        EIR+ L+E+D +EAI+ LP ++F+ T+I+  LWIL+
Sbjct: 338 --GIAGFLLANGALDDSDT----LEIRKLLIESDKVEAIIVLPRNMFYSTDISVTLWILN 391

Query: 412 NRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           N K            R G++  I+     ++I    KK   + +    ++  IY + +  
Sbjct: 392 NNKKGGPWHGRQLRNRTGEILFIDLRTWNSNIYE--KKYVRLTEADIDRVRQIYFNWQTE 449

Query: 463 KF 464
            F
Sbjct: 450 NF 451


>gi|254234630|ref|ZP_04927953.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719]
 gi|126166561|gb|EAZ52072.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719]
          Length = 519

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 94/451 (20%), Positives = 168/451 (37%), Gaps = 46/451 (10%)

Query: 10  SLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GSN 66
            +   +W  A+ LW +   +  +F   +L    LR      E   +A  EK    G G  
Sbjct: 5   DVEKRLWAVADQLWANTGLRPGEFSVPVLGLIFLRYA----EKMYAAAEEKLGPIGSGGR 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             +     +A    +   +   S L +    + +   I       +   E+ D    + R
Sbjct: 61  RKVSKDDYLAEGVIFLPEKARFSYLQTLTEGDVIGLAINEAMKAVEE--ENVDLKGALPR 118

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                    + +      L P  +       +YE+ +  F  +  +    F TP  +V L
Sbjct: 119 NYVQLGNKVLLELIKL--LGPVDLSGDAFGKVYEYFLGNFALKEGQKGGVFYTPESIVKL 176

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 ++DP CG+GG    + + V     H      +   G E
Sbjct: 177 IVEIIEPF-----------HGRIFDPACGSGGMFAQSADFVKRH--HKTAMEEISIFGTE 223

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            E  T  +    + +  L  D R   +        +++D   G RF + ++NPPF     
Sbjct: 224 KEQVTVNLNKMNLAVHGLSGDVRIANTYYEDPHEAVTRD---GGRFDFVMANPPFNVS-- 278

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V+KE   G+L RF  G+PK  + + L++      L    N  GRA  V+++S   
Sbjct: 279 ----GVDKERLEGDL-RFPFGVPKTDNANYLWIQLFYASL----NQNGRAGFVMANSA-- 327

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--ERRGKVQL 424
            G A   E  IR+ L+E+  ++ IV++ ++ F+   +   LW     K    ER  KV  
Sbjct: 328 -GDARGSEQVIRQKLIESGAVDVIVSVGSNFFYTVTLPCTLWFFDRAKERDAERADKVLF 386

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           I+A  ++   R   +  R    +Q   + ++
Sbjct: 387 IDARHIY---RQIDRAHRDWLPEQIEFLANV 414


>gi|307287470|ref|ZP_07567522.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306501516|gb|EFM70815.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
          Length = 343

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 153/356 (42%), Gaps = 40/356 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP  V  +   +L         +      +++DPT G+G  + +  N++  
Sbjct: 1   AGKKAGEFYTPHMVSDMMAQILT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLTH 54

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T 
Sbjct: 55  -------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTD 102

Query: 290 K--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H    L+
Sbjct: 103 EPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK 157

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T +
Sbjct: 158 ----ETGTMAIVLPHGVLFRGAA---EGGIRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 210

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
            +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R+   K++ 
Sbjct: 211 IVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKGVEKYAH 263

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +  +         +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 264 LATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAL 319


>gi|108797003|ref|YP_637200.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119866087|ref|YP_936039.1| N-6 DNA methylase [Mycobacterium sp. KMS]
 gi|108767422|gb|ABG06144.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119692176|gb|ABL89249.1| N-6 DNA methylase [Mycobacterium sp. KMS]
          Length = 495

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 165/456 (36%), Gaps = 48/456 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T   A + N +W  A++L  + K     +   +L    L   E   E  R  V  K  A
Sbjct: 22  KTTDLAKVRNTLWAAADELRANSKLTPVQYRNPVLGLVFLAYAENRFEAVRGEVESKASA 81

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              +          A    Y   E  LS L      +++   +       +A   + +  
Sbjct: 82  RNPATPAD----YKAKSVLYVPEESRLSYLNDLPEGDDIGKAVDDAIKAIEA--ANPELK 135

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + R  +      + +        P  +       IYE  +  F ++  +G  ++ TP 
Sbjct: 136 DILPRGYQKLERSTLIELLRLFAPLPTQLEGDAFGFIYEDFLSNFAAQEGKGGGEYFTPY 195

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L                 ++DP CG+GG        V            L 
Sbjct: 196 SIVRLIVEILEPF-----------HGRVFDPACGSGGMFVQCAKFVERHNESAN--RKLS 242

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             G E   +T  +    + +  L  D         +Q ++  +D       F Y ++NPP
Sbjct: 243 IFGAEKTDDTVPLAKMNLALHGLSGDI--------RQANSYYEDPHKAVGAFDYVMANPP 294

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F        D V+K    G+  RF  G+PK  + + L++      L       GRA  V+
Sbjct: 295 FNV------DKVKKGQLAGD-KRFPFGIPKPDNANYLWIQQFYAAL----GPKGRAGFVM 343

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EERR 419
           ++S    G AG  E EIR+ ++E+ +++ +VA+ ++ F+   +   LW +   K   +R 
Sbjct: 344 ANSA---GDAGHSEKEIRKQIIESGVVDVMVAISSNFFYTVTLPVTLWFMDKAKAGTQRE 400

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
             V  ++A   +   R   +  R    +Q   + ++
Sbjct: 401 DAVLFLDARHTY---RQIDRAHRDFTAEQIEFLANV 433


>gi|265755688|ref|ZP_06090309.1| type I restriction-modification system DNA methylase [Bacteroides
           sp. 3_1_33FAA]
 gi|263234294|gb|EEZ19887.1| type I restriction-modification system DNA methylase [Bacteroides
           sp. 3_1_33FAA]
          Length = 529

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 110/490 (22%), Positives = 197/490 (40%), Gaps = 63/490 (12%)

Query: 1   MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +         +L   ++     L G    TD   ++L    L+ +    +  +  +R 
Sbjct: 1   MAKKQTKITKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKDKIRH 60

Query: 58  KYLAFGGSNIDLESFVKVA---------GYSFYNTSEYSLSTL---GSTNTRNNLESYIA 105
           + +   G +   E+FV++             F+ T E     L     T      ++ I 
Sbjct: 61  EIVEVQGIH--DEAFVEMQLSRPNQYMQDGVFFLTDETFWDKLILTAPTGMAIAFDTAIK 118

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
           +  DN   +              + G L  +    + I+  P    D  +   +YE+ ++
Sbjct: 119 TLDDNEPKLKNALPQQIFTKTALEPGGLKSVVDEINKID--PKKFTDHDLIGRVYEYFLQ 176

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  +V L  +L+   D            T+YDP CG+GG    A 
Sbjct: 177 AFSINADKEEGEFYTPHSIVELIASLIEPFDG-----------TVYDPCCGSGGMFVQAT 225

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +   G + K   +   +GQE EP T+ +    + IR +            +  ST S 
Sbjct: 226 KFIEAHGGNTKAVNV---YGQESEPATYRLAKMNLAIRGI------SYHLGDKAVSTFSD 276

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +F Y ++NPPF  K   +    E   +       G G+P  S+ +  +++H+ N
Sbjct: 277 DQHKDLKFDYIMANPPFNLKKYAEYGEFETAPRWK-----GYGVPPASNANYAWILHILN 331

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL++     G A  +L++  L +        EIR+ L+END IEAI+ LP ++F+ T+I+
Sbjct: 332 KLDV---NHGIAGFLLANGALDDSDT----LEIRKRLIENDKIEAIIVLPRNMFYSTDIS 384

Query: 405 TYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
             LWIL+N K            R G++  I+     ++I    KK   + + +  ++  I
Sbjct: 385 VTLWILNNNKKGGPWHGRQLRNRTGEILFIDLRTWNSNIYE--KKYVRLTETEISRVCQI 442

Query: 456 YVSRENGKFS 465
           Y + +   F+
Sbjct: 443 YFNWQTENFA 452


>gi|312114646|ref|YP_004012242.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219775|gb|ADP71143.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 518

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/465 (19%), Positives = 178/465 (38%), Gaps = 56/465 (12%)

Query: 8   AASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              L+  ++  A+ LW     +   + + +L    LR++E   E   + +  K+      
Sbjct: 5   LNELSKTLFAAADKLWTNSALRPDQYAQPVLALIALRQMEAKFETVHAQLAPKF----TG 60

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            +  +     A  + +   E   S L    G+ +    L   +   +D       + D +
Sbjct: 61  RLKPKPADYQARGAVFLPPEARFSRLLALPGTADLGAELNEAMKGIAD------ANPDLA 114

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           S + R     +     +    + L P  +       I+E+ +  F S   +   ++ TP 
Sbjct: 115 SALPR-GYGNIPNDTLREILRL-LAPLKIEGDAYGLIFEYFMGEFASSFMQKGGEYFTPA 172

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   ++     A           + DP CG+GG    +   V     H      + 
Sbjct: 173 SIVKLIVEVIEPFHGA-----------ILDPACGSGGMFVHSAEFVRRH--HKAPASEIA 219

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPP 300
             G E   +T  +C   + +  L  D         ++ ++   D      +F + ++NPP
Sbjct: 220 VFGVEKMSDTLRLCRMNLAVHGLSGDI--------REANSYYDDPHKLIGKFDFVMANPP 271

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F +     K  V    K     RF  GLP +++ + L++      L    N  GRA  V+
Sbjct: 272 FNQPEVDQKRLVNDAGKVD--ARFPLGLPSVNNANYLWINQFFAAL----NATGRAGFVM 325

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERR 419
           ++S      AG  E EIRR L+++  ++ IVA+  ++F+   +   LW L   K   +R 
Sbjct: 326 ANSA---SDAGGSEREIRRKLIDSGAVDCIVAVGPNMFYTVTLPVTLWFLDKGKATGKRA 382

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYVSREN 461
            +V  I+A  L+   R E +  R+ + +       I+ ++  ++ 
Sbjct: 383 DEVLFIDARHLF---RQETRAHRVFDPEHIDFLGNIVRLWRGKDI 424


>gi|169825229|ref|YP_001692840.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
 gi|167832034|dbj|BAG08950.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
          Length = 579

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 180/484 (37%), Gaps = 63/484 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+       L + +W +A+ L          +G+ IL    LR  +   +  +  +  +
Sbjct: 1   MTDK--ELKELKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEEIEAE 58

Query: 59  YLAFGGSNIDLE-SFVKVAGYSFYNT----SEYSLSTLGSTNTRNNLESYIASFSDNA-- 111
           Y    G  ++     + +    FY       ++        N    ++  + +  D    
Sbjct: 59  YNRLKGGRMEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIEDENPK 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                  +  + +   E+  LL  I + F  I   P+     +   IYE+ +  F     
Sbjct: 119 MDGVLPKEVYAQLVPEEEPELLSNIVRIFKDI---PENSTIDIFGEIYEYFLGNFALAEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-LYDPTCGTGGFLTDAMNHVADC 230
           +    F TP  VV     +L          +P        DP CG+GG    A  ++ + 
Sbjct: 176 KDGGTFYTPATVVRYMVEVL----------NPQPGEKKFLDPACGSGGMFVQAARYMHNH 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +          +G E EP+T  +    +L+  +  D     S         S       
Sbjct: 226 NASESEQMKFRCYGVEKEPDTVKLAKMNLLLNNVRGDITEANSF-------YSDPYNAYG 278

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISDGSML 337
           +F Y ++NPPF      D+  VEK   +     +G                  + + + L
Sbjct: 279 QFDYVMANPPFNV----DEVVVEKVSDDNRFNTYGVPRNKSKSKKKKSDKKETVPNANYL 334

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ + A  L    N  G+AA+V+++S      A   E +IR+ ++E  +I  +V LP+++
Sbjct: 335 WIGYFATAL----NEKGKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTLPSNM 387

Query: 398 FFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---IL 453
           F    +   LW    +K   +++ ++  I+A +++T +    +  R  +D+Q +    I 
Sbjct: 388 FSSVTLPATLWFFDKQKPNTDKKNEILFIDARNVFTQV---DRAHRKFSDEQIKNLGVIT 444

Query: 454 DIYV 457
            +Y 
Sbjct: 445 KLYH 448


>gi|212695171|ref|ZP_03303299.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855]
 gi|319641373|ref|ZP_07996066.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A]
 gi|212662257|gb|EEB22831.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855]
 gi|317386988|gb|EFV67874.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A]
          Length = 529

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/493 (22%), Positives = 195/493 (39%), Gaps = 69/493 (13%)

Query: 1   MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +         +L   ++     L G    TD   ++L    L+ +    +  +  +R 
Sbjct: 1   MAKKQTKITKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKDKIRH 60

Query: 58  KYLAFGGSNIDLESFVKVA---------GYSFYNTSEYSLSTL---GSTNTRNNLESYIA 105
           + +   G +   E+FV++             F+ T E     L     T      ++ I 
Sbjct: 61  EIVEVQGIH--DEAFVEMQLSRPNQYMQDGVFFLTDETFWDKLILTAPTGMAIAFDTAIK 118

Query: 106 SFSDN---AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161
           +  DN    K       F+ T   L     +             P    D  +   +YE+
Sbjct: 119 TLDDNEPKLKNALPQQIFTKTALELGVLKSVVDEINKID-----PKKFTDHDLIGRVYEY 173

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            ++ F     +   +F TP  +V L  +L+   D            T+YDP CG+GG   
Sbjct: 174 FLQAFSINADKEEGEFYTPHSIVELIASLIEPFDG-----------TVYDPCCGSGGMFV 222

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   +   G + K   +   +GQE EP T+ +    + IR +            +  ST
Sbjct: 223 QATKFIEAHGGNTKAVNV---YGQESEPATYRLAKMNLAIRGI------SYHLGDKAVST 273

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            S D     +F Y ++NPPF  K   +    E   +       G G+P  S+ +  +++H
Sbjct: 274 FSDDQHKDLKFDYIMANPPFNLKKYAEYGEFETAPRWK-----GYGVPPASNANYAWILH 328

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + NKL++     G A  +L++  L +        EIR+ L+END IEAI+ LP ++F+ T
Sbjct: 329 ILNKLDV---NHGIAGFLLANGALDDSDT----LEIRKRLIENDKIEAIIVLPRNMFYST 381

Query: 402 NIATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +I+  LWIL+N K            R G++  I+     ++I    KK   + + +  ++
Sbjct: 382 DISVTLWILNNNKKGGPWHGRQLRNRTGEILFIDLRTWNSNIYE--KKYVRLTETEISRV 439

Query: 453 LDIYVSRENGKFS 465
             IY + +   F+
Sbjct: 440 CQIYFNWQTENFA 452


>gi|325912651|ref|ZP_08175034.1| type I restriction-modification system, M subunit [Lactobacillus
           iners UPII 60-B]
 gi|325478072|gb|EGC81201.1| type I restriction-modification system, M subunit [Lactobacillus
           iners UPII 60-B]
          Length = 895

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 182/492 (36%), Gaps = 51/492 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W+    L G  + + +   +L     + +    +  R              
Sbjct: 4   KKSELYSILWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGKR-------------- 49

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
                F    G SF       +   G  +    ++  I  F +N   K +  D  F++  
Sbjct: 50  --FADFEVSEGASFDEL----VKACGKPDVGERVDIIIQKFLENNQLKGLLPDVSFNNPD 103

Query: 125 ---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 E    +  + K F    I+   +    D ++ + YE+ + +F  E  +    F 
Sbjct: 104 ELGKGKELVDKVSGLIKMFQNPAIDFKSNMASGDDIIGDAYEYFMMKFAQESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V      L+   +  +  +   M   L+DP  G+G  L  A +   +    + I  
Sbjct: 164 TPSEVSRTIARLIGIGNIDVNVQRHYM---LHDPAAGSGSLLIRAADEAPNRADGNSIVD 220

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I   +GQE   +T  +     ++           + N         +     +F + + N
Sbjct: 221 I---YGQEKYTDTAGLAKMNFILH--NKATGEIKAANTLSDPQYIDEFGELTKFDFIVMN 275

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K   D   V ++      G     +P   +G   + +H+   L+      G+A I
Sbjct: 276 PPFSDKDWTDGIKVSEDKFKRFDGYG--AIPPEKNGDYAWFLHVLKALKP----TGKAGI 329

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L    LF G A   E  IR+ +++   I+ IV+LP +LF+ T I   + ++     ++R
Sbjct: 330 ILPHGILFRGNA---EETIRKAIIKKKWIKGIVSLPANLFYGTGIPACIILVDKENADKR 386

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
            G +  I+A+D +    N+ +    + +    +I+  + +R E   +SR + +       
Sbjct: 387 EG-IFFIDASDGYKKDGNKNR----LREQDIEKIVQTFNNRTEIKGYSRFVSFEEIEQND 441

Query: 478 IKVLRPLRMSFI 489
             +  P  +  I
Sbjct: 442 GNLNVPRYIQKI 453


>gi|15964352|ref|NP_384705.1| putative modification enzyme transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15073529|emb|CAC45171.1| Putative modification enzyme transmembrane protein [Sinorhizobium
           meliloti 1021]
          Length = 526

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 179/482 (37%), Gaps = 51/482 (10%)

Query: 6   GSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               ++++ +W  A+ L  +      ++ + +L    LR  +       S V  K     
Sbjct: 3   ADLKTISDKLWTTADKLRANSGILPAEYARPVLGLLFLRHADERF----SEVEAKLSPRE 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           GS I   S    A  + +   E   S L S     NL   + +   + +A  ++ + +  
Sbjct: 59  GSRIRPGSEAYKAEGAIFLPPEARFSYLLSLPEGENLGKKLTAAMRDIEA--KNPELADV 116

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + +  +      + +     EL P  +      ++YE+ +  F  E  +   +F TP  +
Sbjct: 117 LPKTYQLIPDDVLVELLR--ELQPLKISGDAFGHVYEYFMGNFAKETMQKGGEFYTPSSI 174

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   ++           P     + DP CG+GG    + + V       +    L  +
Sbjct: 175 VRLIVEII----------EPYHG-RILDPACGSGGMFVHSADFVKRH--QREPDKELSIY 221

Query: 244 GQELEPETHAVCVAGMLIRR-----LESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLS 297
           G E   ET  +    + +       L++D  RD               + G   F + ++
Sbjct: 222 GVERTRETWRLAQMNLAVHGLSGKILDADTYRDPVFEEVTPKKDKDGRYEGSGGFDFVMA 281

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K       ++K        RF  G+P   + + L++    ++L    N  GRA 
Sbjct: 282 NPPFNVK------ELDKSKLLDVANRFPFGVPSADNANYLWIQFFWSRL----NETGRAG 331

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE- 416
            V+++S      A   E EIRR L+E+  ++ IV++  + F    +   LW     K   
Sbjct: 332 FVMANSA---ADARGTEQEIRRKLIESGSVDVIVSVGPNFFLTVTLPCTLWFFDKGKATG 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKF---SRMLDYR 471
            R  +V  ++A  ++   R   +  R   ++Q   + +I      E  +F   S+     
Sbjct: 389 PRADEVLFLDARHIF---RQIDRAHRDFTEEQVEALANIVRLWRGEQPEFFTPSKAWLEE 445

Query: 472 TF 473
            F
Sbjct: 446 HF 447


>gi|309809689|ref|ZP_07703545.1| type I restriction-modification system, M subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308170049|gb|EFO72086.1| type I restriction-modification system, M subunit [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 353

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 159/378 (42%), Gaps = 46/378 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP
Sbjct: 12  DAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEVNK--------VYDP 63

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  ++  +   G  +        +GQE+   T+ +C   M +  +E D     
Sbjct: 64  ACGSGSLLLKSLKVLGKEGVRNG------FYGQEINITTYNLCRINMFLHDVEFDK---- 113

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             ++    TL+       + F   +SNPP+  KW+ D + +          RF P   L 
Sbjct: 114 -FDVACEDTLTSPQHWDDEPFELIVSNPPYSIKWDGDANPLLIND-----PRFAPAGVLA 167

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ 
Sbjct: 168 PKSKADLAFIMHSLAWL----ASNGTAAIVCFPGIMYRGGA---EKKIRQYLVDNNFIDC 220

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP++LFF T IAT + ++   K + R      I+A++    + N       +  +  
Sbjct: 221 IIQLPSNLFFGTPIATCIMVIKKNKIDNR---TLFIDASNECVKVTN----NNKLTPENI 273

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRK 506
            +I+DI+  RE     + +  Y         + V   +      +K  + +L A+I  ++
Sbjct: 274 DRIVDIFTKREEIEHIAHLASYDEVKENDFNLSVSTYVEAEDTREKIDIVKLNAEI--KE 331

Query: 507 LSPLHQSFWLDILKPMMQ 524
           +    Q    +I K + +
Sbjct: 332 IVAREQVLRDEIDKIIAE 349


>gi|304373126|ref|YP_003856335.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis HUB-1]
 gi|304309317|gb|ADM21797.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis HUB-1]
          Length = 931

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 217/618 (35%), Gaps = 81/618 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +T    +   LAN IW  A+ L G    +++   +L     + +    E T     +   
Sbjct: 10  ITNKALTKQELANKIWTAADKLRGSIDASEYKNFLLELIFYKTISEKFEKTFIENFKDIQ 69

Query: 61  AFG------------------------GSNIDLESFVKVA----GYSFYNTSEYSLSTLG 92
                                       +  +L+ + +      GY       +S     
Sbjct: 70  MLKCFTKVRNNFNNNTKDDNIVTLCSQYTEKELKDYKEELNGLVGYFIEEPYLFSSWIKN 129

Query: 93  STNTRNNLE--SYIASFSDNAKAIFEDFD-------------FSSTIARLEK-AGLLYKI 136
           +    N L     I +F+ N K   E  +             F+S    L K      + 
Sbjct: 130 NLEDFNVLTLSDSIKAFNQNQKEFEEKINPDKCSATPLFEGIFNSLSNDLNKLGNTTLEQ 189

Query: 137 CKNFSGIELHPDTVP-----DRVMSNIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATAL 190
            K  + +      +P       V+  +YE LI +F  S   +   +F TP +V  L + +
Sbjct: 190 TKKLTSLIDIIKDIPVKQNNFDVLGYVYEFLIAKFASSNTGKKGGEFYTPHEVSLLMSEI 249

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +     A   ++      +YD T G+G  L    +      ++      +  + QEL   
Sbjct: 250 V-----ANHLKNKNYEIKVYDSTSGSGSLLRSIGDMYKKITNND--DNSVKYYAQELNSS 302

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +    ++I  + +      + +  +     K+     +    +SNPP+   W  ++ 
Sbjct: 303 TCKLTKMNLIINGIATKSICVQNADTLKDDWPMKNDEETLKVDAVVSNPPYSMSWNAEEH 362

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             +   +         G+   S     FL+H           GG  AIVL    LF   +
Sbjct: 363 KNDIRFEE-------YGIAPRSKADFAFLLHDLYH----VEDGGILAIVLPHGVLFREGS 411

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK--TEERRGKVQLINAT 428
              E +IR  L+    I+AI+ LP  +F+ T I+T + IL   K   + +   +  ++A+
Sbjct: 412 ---EKQIREKLVRKANIKAIIGLPDKMFYGTEISTIIMILKKDKYYEKTKENNILFVDAS 468

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYR--RIKVLRPLR 485
           +L+     +  K +       ++I+D  ++ RE   FS+++++         + + R L 
Sbjct: 469 NLY----KQEGKMKKFLASHIKKIVDTVINKREILGFSKIVNFSEIVENDFNLNISRYLD 524

Query: 486 MSFILDKTGLAR-LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
                ++  L   L  +I+  +L+   + F+        +        + F  + +   +
Sbjct: 525 NFKKEEQYDLYSTLYGEISETELNVNFKEFFSTFPDLKQKLFVAGQNNDHFKFKDLDKIQ 584

Query: 545 AKTLKVKASKSFIVAFIN 562
               + +  + +++ F  
Sbjct: 585 DLVFESENVQKYLLTFET 602


>gi|307288976|ref|ZP_07568944.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306500067|gb|EFM69416.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
          Length = 343

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 152/356 (42%), Gaps = 40/356 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP  V  +   ++         +      +++DPT G+G  + +  N++  
Sbjct: 1   AGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNVRNYLTH 54

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T 
Sbjct: 55  -------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTLNKDWPTD 102

Query: 290 K--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F   + NPP+   W  D   ++    +    R+G  L   S     FL+H    L+
Sbjct: 103 EPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK 157

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T +
Sbjct: 158 ----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 210

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
            +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R+   K++ 
Sbjct: 211 IVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAERKGVEKYAH 263

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +  +         +  P  +    ++  +  +      +K+         ++L+ +
Sbjct: 264 LATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLEAI 319


>gi|304310051|ref|YP_003809649.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301795784|emb|CBL43983.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 713

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 208/549 (37%), Gaps = 63/549 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   +  ++   +WK+A+ L  + +    ++   ++    LR         +  +   
Sbjct: 1   MAQL-ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVAT 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
             + GG   +L         + Y   E     L +    +N    I    D+ +A  +  
Sbjct: 60  LPSRGGKTRELTKEDFSKKSAIYLKPEAQFDYLIALTDADNRAEAIIHAMDSIEA--DYT 117

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGAE 175
           +  + + + E   +   +        L+P+ +      +   IYE+ + +F  + +    
Sbjct: 118 NLRNQLPKQEYNNIPNDVLGMLLRT-LNPEELKKATGDIFGRIYEYFLTQFADQGAHDGG 176

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V L    +L+PD             ++DP CG+GG    + + +     H +
Sbjct: 177 EFFTPVSLVQLIVN-VLEPDHG----------KIFDPACGSGGMFVQSAHFMER---HAQ 222

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFH 293
            P  L  +G E    T  +    + +  LE +         +   T   D   G      
Sbjct: 223 DPHELTFYGHEKNRVTTRLAKMNLAVHGLEGNVE-----GGEAAITYYNDPHEGLFGTVD 277

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNG 352
           Y ++NPPF    E D D ++ + +    G  G    K  S+ + L++ +  + L    N 
Sbjct: 278 YVMANPPFNVD-EVDADKIKGDKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----ND 332

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRA  V+SS       AG  E+++R  L++   ++ +V +  + F+   +   LW L+ 
Sbjct: 333 TGRAGFVMSSQA---SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNK 389

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K    + KV +++A +++  +               R+I D    ++    + +  YR 
Sbjct: 390 NKPAHLKDKVLMLDARNVYRKVT--------------RKIYDFSPEQQQNLTAVVWLYRG 435

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEA---------DITWRKLSPLHQSFWLDILKPMM 523
            G R +++++      I +     + EA          I   KLS   Q F +D L+   
Sbjct: 436 EGERFVELVQQYIDKSIFEARSCEQSEALACEPVPDFIIQLEKLSQAFQPF-MDKLEQNG 494

Query: 524 QQIYPYGWA 532
             + PY   
Sbjct: 495 VSVEPYVDF 503


>gi|255324373|ref|ZP_05365491.1| type I restriction-modification system, M subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298560|gb|EET77859.1| type I restriction-modification system, M subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 374

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 160/386 (41%), Gaps = 45/386 (11%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +E++  L  I      ++L   T  D  V  + YE+L+R + S       +  TP++V
Sbjct: 2   TTVERSKRLATIMMAVDKLDLGSFTDTDIDVFGDAYEYLLRMYASNAGRSGGEHFTPQEV 61

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             +  A+ ++            IR  YDP  G+G  L      +               +
Sbjct: 62  SEILAAIAVN--------RRSTIRRAYDPCTGSGSLLFRFAKVLGIDNITDG------LY 107

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302
           GQE+ P  HA+    M +  +  +       +I++G TL   L    + F   +SNPP+ 
Sbjct: 108 GQEINPTNHALARMNMFLHGVPFEK-----FDIKRGDTLENPLHLEVQPFDAIVSNPPYS 162

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +KW    D            RF P   L   S   + F MH+ + L       G AAIV 
Sbjct: 163 QKWPGKDDVTLIND-----PRFAPAGALAPKSYSDLAFTMHMLHHL----EEDGVAAIVE 213

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               L+ G A   E  IR++L++N+ ++A++ LP +LFF T+I+T + +L   +      
Sbjct: 214 FPGILYRGGA---EKTIRQYLVDNNFVDAVIQLPPNLFFGTSISTVILVLKKNRE---TN 267

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK 479
            V  ++A   +         +  +N+D ++ ILD+Y + E     + ++       +   
Sbjct: 268 DVLFVDAAAHFVK----NGAKNTLNEDNQQAILDLYFNHEAVEHQAELVSNDDIAAKDYT 323

Query: 480 --VLRPLRMSFILDKTGLARLEADIT 503
             V   +      +K  +A+L ADI 
Sbjct: 324 LSVNSYVEKEDTREKVDIAQLNADIA 349


>gi|313898150|ref|ZP_07831689.1| putative type I restriction-modification system, M subunit
           [Clostridium sp. HGF2]
 gi|312957178|gb|EFR38807.1| putative type I restriction-modification system, M subunit
           [Clostridium sp. HGF2]
          Length = 538

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/487 (19%), Positives = 194/487 (39%), Gaps = 56/487 (11%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M   T +       L   +W     L G          ++    L+      E  R  + 
Sbjct: 1   MARATKTKKEVEVSLETVLWNCRVALRGVGTTEKNRDAVIGLVFLKFAGDKFEKRRKELL 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNA 111
           ++Y            +  V  +    T+ +S     ++        +   + I   +   
Sbjct: 61  DQYGDISAFLEKPSFYNAVNVFYLKETARWSYIVKNASANDIAIIIDQAMADIEESNPPL 120

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K       F++  A   K   L              +     ++  +YE+ ++ + +  +
Sbjct: 121 KGALTLNLFATLGADKAKIKDLIDNVNQIDEKRFQEE----DLIGRVYEYFLQIYAASGT 176

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  VV L   ++           P    T+YDP CG+GG    +M  V    
Sbjct: 177 KEDGEFYTPACVVKLIAEMI----------EPYSG-TVYDPCCGSGGMFVQSMKFV---D 222

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            H+     +   GQE + ET  +C   + IR +        +   +  ST ++DL   K+
Sbjct: 223 RHNGNRQKISIIGQESQAETWRLCKMNLAIRGIAH------NLGEKNASTFTEDLHKDKK 276

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF  K  + +D +  + +  + G     +P +S+ +  +++H+ NKL++   
Sbjct: 277 VDFIMANPPFNLKNWRKEDELVGDPRFMKAGFSV--MPPVSNANYAWILHMLNKLDV--- 331

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L    A   E  +R+ L+E D +EAI+ LP D+F+  +++  LWI++
Sbjct: 332 NHGIAGFLLANGAL---EADGVEYTLRKELIEKDKVEAIIVLPRDMFYTVDLSCTLWIMN 388

Query: 412 NRKT---------EERRGKVQLINA------TDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             K           +R  ++  ++       ++     +N+ KK+ ++ D+Q  QI  +Y
Sbjct: 389 MNKKAVVVNGRRLRDRTSEILFMDLRTWNGNSEEIVIDKNKKKKKTVLTDEQISQIKAVY 448

Query: 457 VSRENGK 463
            S ++ +
Sbjct: 449 NSWQSDE 455


>gi|288932530|ref|YP_003436590.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642]
 gi|288894778|gb|ADC66315.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642]
          Length = 581

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 192/514 (37%), Gaps = 44/514 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAF 62
           +   L   +   A+ + G     D+  V+L F   + L        E   S    K  A+
Sbjct: 86  TRDKLFRSLKAGADLIRGGV---DYK-VLLLFLFYKALSDKWNALVESFVSEGHTKTQAY 141

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDF 120
             +N                  E +      T   N L           + + + E   F
Sbjct: 142 LLANRKYYVLYDENEQKLLTWHEVTKKRETLTELANALTRISRLNEKLSDLEKLVEILGF 201

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              I+  +    +  I + F+ ++     +P  V+ + Y  ++  F  + ++  E+  TP
Sbjct: 202 KGFISE-DNLHTIESIIQIFNTLDFS--KLPYDVIGDAYMWILNYFAPQKAKEGEN-YTP 257

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            ++V L   LL    D         + T+ DP  G+G  L  + ++V +         +L
Sbjct: 258 IEIVKLVVNLLDIEVDEESG-----VVTVLDPALGSGSMLIVSRDYVREKYGKEG-EDVL 311

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           + +GQE       +    +++  +++            G +L+   F   +  Y ++NPP
Sbjct: 312 MLYGQERNEIMGVIAKMNLILHDIKNYEIFI-------GDSLANPRFP--QCDYVVANPP 362

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           + + +  +   +E         +F   LP  +     ++  +            +  I+L
Sbjct: 363 WNQDYNVNG-LIEDPKVKKIYTQFTSTLPPKNSMDWGWIQLMLYF------ARKKVGIIL 415

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
            +  LF G +   E  IR  ++  DLIEA+V LP  LF+ T     + I +  K EER+G
Sbjct: 416 DNGALFRGGS---EKRIREAIVRRDLIEAVVLLPEKLFYNTGAPGCVIIFNKNKPEERKG 472

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK 479
           K+  INA++ +     E ++   + +    +I+D Y   ++ K F+R++           
Sbjct: 473 KILFINASNEYEK-HPEVRRLNRLGEKNIEKIVDAYREFKDIKGFARVVSIEEIAKNDYN 531

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +   L   ++        ++    WR+L  +   
Sbjct: 532 LNVTL---YVTPIVEEEEIDVVEEWRELEKIEAE 562


>gi|257083311|ref|ZP_05577672.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein
           [Enterococcus faecalis Fly1]
 gi|256991341|gb|EEU78643.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein
           [Enterococcus faecalis Fly1]
          Length = 454

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 175/453 (38%), Gaps = 50/453 (11%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSST---IARLEKAGLLYKICKNF 140
           E   +    T+T  +    IA  +  + + IF+   F S         +A ++  + +  
Sbjct: 19  EDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMRFDSADLGANAQARASVMISMIELL 78

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           S  E       D  +S+IYE+L+ +F + ++     + TP+++ ++   +L    +    
Sbjct: 79  SSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTSGREE--- 134

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                  ++YDPT G+G  L    +++ +         ++   GQE +   + +    ++
Sbjct: 135 ---EESFSIYDPTVGSGSLLLTTASYMKNSHKRG----MIKYFGQEKDATPYRLSRMNLM 187

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAV 312
           +  +E +        I    TL  D   G        + F   ++NPP+   W       
Sbjct: 188 MHGVEYNDIS-----INHADTLESDWPDGVVDGKDNPRMFDAVMANPPYSAHWNN----- 237

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            K+ ++    R   G+   +     FL+H    L       GR AI+L    LF G A  
Sbjct: 238 -KDREDDPRWR-EYGIAPKTKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGAA-- 289

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  IR+ L++   IE ++  P  LF  T+I   + IL   +T      +  ++A+  + 
Sbjct: 290 -EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCVLILRKNRTAS---DILFVDASREFE 345

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +    KK+  +  +   +I+D  V R E  K+S +            +  P  +    +
Sbjct: 346 KL----KKQNHLRPEDVDKIVDTVVQRKEIEKYSHLATLDEIKENDYNLNIPRYVDTYEE 401

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +  +  +  +   +  +   +    ++L  +  
Sbjct: 402 EPPVDLVALNNDIKNTNEEIKKVEAELLAMLDD 434


>gi|254167129|ref|ZP_04873982.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|197623985|gb|EDY36547.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
          Length = 573

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 198/517 (38%), Gaps = 48/517 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVRE 57
           T+ +    +L   +   A  + G     D+  V+L F   + L        E        
Sbjct: 80  TKTSSKRDTLIKTLKAGANYIRGGV---DYK-VLLIFLFYKALSDIWLAQVEKYMREGFT 135

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIF 115
           K  A+  +N D  +             E + S   +    N +           + + + 
Sbjct: 136 KTQAYLLANSDYYTLYDEDEQKLLTWHEVTKSRETTIELANAITRISRLNEKLSDLQKLV 195

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +   F   I   +    +  I   F+ ++     +   V+ + Y  ++  F  + ++  E
Sbjct: 196 DVLGFRGFINE-DNLHNIESIVDIFNSLDFS--KLSYDVIGDAYMWILNYFAPQKAKEGE 252

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TP+++V L   LL                T+ DP  G+G  L ++  +V D     +
Sbjct: 253 N-YTPQEIVKLLVNLL----------DIQNGSTVLDPALGSGSMLIESWMYVRDNNKEAE 301

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++ +GQE       V    +++  ++       + +I  G +L+   F  +   Y 
Sbjct: 302 ----MMLYGQERNEIMGIVAKMNLILHDIK-------NYDIYIGDSLANPRF--QSCDYV 348

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPP+  K+  +    +   K       G G P  +     ++  +            +
Sbjct: 349 IANPPWNLKYNVNALKQDPRVKKIYTTFVGNGFPSKNSMDWAWIQLMLYF------SNKK 402

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             I+L +  LF    G  E +IR  +++ DLIEA++ LP  LF+ T+ A  + I +  K 
Sbjct: 403 VGIILDNGALFR---GGKEKKIREGIVKKDLIEAVILLPEKLFYNTSAAGAVIIFNKNKP 459

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
           E+R+ KV +INA++ +     E ++   + D+  ++I+  Y   ++   F++++      
Sbjct: 460 EDRKRKVIIINASNEYEK-HPEVRRLNKLGDEHIKKIVKAYRDFKDIEGFAKVVSIEEIE 518

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                +   L +S  +++  +   E    ++++    
Sbjct: 519 KNDFNLNVSLYVSPKVEEEDIDLQEEMQKFKEIEEKE 555


>gi|312872335|ref|ZP_07732405.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092158|gb|EFQ50532.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 535

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 102/489 (20%), Positives = 191/489 (39%), Gaps = 63/489 (12%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAV 55
           M +   +  +L   + ++   + L        F     ++L    LR +    E    A+
Sbjct: 1   MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60

Query: 56  REKYLAFGGSNIDL---ESFVKVA---GYSFYNTSEYSLSTLGSTNT------RNNLESY 103
           R+  +  G    D     +F   A     ++    E   ST+ +T         +   S 
Sbjct: 61  RKTLIEQGLDPDDANIKAAFFDDATFTDGTYSLPVEARWSTIINTPAPKLNVALDTALSK 120

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           + +     K  F    F++          +       S      +     ++  +YE+ +
Sbjct: 121 LEAEDPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGKEK---DLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L  A++   +            TLYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLIAAMIEPFEG-----------TLYDPACGSGGMFIQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V    S       +  +GQE E  T+ +    + +R +        +      S+ +
Sbjct: 227 AELVK---SKQGNLNSINVYGQEKEAATYRLAKMNLALRGISH------NLGGTNDSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL  G  F Y ++NPPF  K   D      E+   +      G P  S+ +  +++H+ 
Sbjct: 278 HDLHKGLYFDYVMANPPFNLKGWYD------ENLKNDARWADYGTPPESNANYAWILHIL 331

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+      G A  +L++  L      S   EIR+ L++ND +EAI+ LP +LF  T+I
Sbjct: 332 SHLK---PSNGVAGFLLANGAL----NDSDTLEIRKKLIQNDKVEAIIVLPRELFITTDI 384

Query: 404 ATYLWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453
           +  LWIL+  K            R  ++  ++      + ++ E KK+  ++ DQ ++  
Sbjct: 385 SVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRTWTENAVKGENKKKVRLSADQIQRAA 444

Query: 454 DIYVSRENG 462
           +IY + ++ 
Sbjct: 445 NIYHTWQSE 453


>gi|326314828|ref|YP_004232500.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371664|gb|ADX43933.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 483

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 98/421 (23%), Positives = 159/421 (37%), Gaps = 49/421 (11%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYKICKNFSGIEL-HPDTVPDRV 154
           +   + +       + +F D  F S       ++  +L      F G+E  + D      
Sbjct: 84  DQALANLEDRHPLLQGVFHDVSFDSAALGNPEQRQRILSDWLDQFGGLEFDYRDENAAES 143

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           ++   E LI    +       +F TP  V  L   +L           P    ++ DP C
Sbjct: 144 VAFACETLISEVAAASGRRGAEFFTPPQVSRLIAQIL----------QPEAGESVGDPCC 193

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L            +          GQE    T A+    ML+         +L+ 
Sbjct: 194 GSGTLLLACSAFARARSGYEGCQ----LFGQEKNGSTWALAKINMLVHG-------ELTA 242

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            ++ G TL           + F   +SNPPF  K    + A      N   GR+  G+P 
Sbjct: 243 QLEWGDTLKDPRLVADGRLREFDVVVSNPPFNVKDWGQEAAA-----NDLYGRYRRGIPP 297

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  FL H+   L+    G GR A+V+S   LF   A   E +IRR LLE  L++A+
Sbjct: 298 RGTADYAFLSHMVETLK---PGRGRMAVVVSHGVLFRSGA---ELQIRRQLLEEGLVDAV 351

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           +ALPT L   T +   L +L   K++ R   V  I A+  +      GK +  + D+   
Sbjct: 352 IALPTKLLPNTPLPIALLVLRKDKSDRR---VLFIKASRQFE----HGKTQNRLRDEDLA 404

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           QI   YV+R +   ++R++           + V R +     + +  L  L A+ +  + 
Sbjct: 405 QIEATYVARADVEGYARLVSLEDILQNDCNLNVARYVEAVEPVCQVDLEALRAERSQLRA 464

Query: 508 S 508
            
Sbjct: 465 E 465


>gi|126176533|ref|YP_001052682.1| N-6 DNA methylase [Shewanella baltica OS155]
 gi|125999738|gb|ABN63813.1| N-6 DNA methylase [Shewanella baltica OS155]
          Length = 565

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/509 (18%), Positives = 200/509 (39%), Gaps = 71/509 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   +  ++   +WK+A+ L  + +    ++   ++    LR         +  +   
Sbjct: 1   MAQL-ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVTT 59

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYS--LSTLGSTNTRNNLESYIASFSDNAKAI 114
             + GG   +L  E F K +       +++   ++   + N    + + + S   +    
Sbjct: 60  LPSRGGKTRELTKEDFSKKSAIFLKPDAQFDALIALTDADNRAEAIINAMDSIEADYT-- 117

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVS 171
               +  + + + E   +   +        L+P+ +      +   IYE+ + +F  + +
Sbjct: 118 ----NLRNQLPKQEYNNIPNDVLGMLLRT-LNPEELKKATGDIFGRIYEYFLTQFADQGA 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V L    +++PD             ++DP CG+GG    + + +A   
Sbjct: 173 HDGGEFFTPVSLVQLLVN-VIEPDHG----------KIFDPACGSGGMFVQSAHFMAR-- 219

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
            H + P  L  +G E    T  +    + +  LE +         +   T   D   G  
Sbjct: 220 -HAQDPHELTFYGHEKNRVTTRLAKMNLAVHGLEGNVE-----GGESAITYYNDPHEGLF 273

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLA 343
               Y ++NPPF        D V+ +   G+  R   GLP      K+S+G+ L++ +  
Sbjct: 274 GTVDYVMANPPFNV------DEVDADKIKGDKHRLPFGLPGVNKNKKVSNGNYLWIQYFY 327

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L    N  GRA  V+SS       AG  E+++R  L++   ++ ++ + ++ F+   +
Sbjct: 328 SYL----NDTGRAGFVMSSQA---SSAGRDEAKVREQLVKTGDVDIMIDIRSNFFYTRTV 380

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              LW L+  K    + KV +++A +++  +               R+I D    ++   
Sbjct: 381 PCQLWFLNKNKPAHLKDKVLMLDARNVYRKVT--------------RKIYDFSPEQQQNL 426

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            + +  YR  G R I++++      I + 
Sbjct: 427 TAVVWLYRGEGERFIELVQQYIDKAIFEA 455


>gi|309804936|ref|ZP_07698995.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165749|gb|EFO67973.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LactinV 09V1-c]
          Length = 535

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 189/489 (38%), Gaps = 63/489 (12%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAV 55
           M +   +  +L   + ++   + L        F     ++L    LR +    E    A+
Sbjct: 1   MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60

Query: 56  REKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESY 103
           R+  +  G +  D             A  ++    E   ST+ +T         +   S 
Sbjct: 61  RKTLIEQGLNPDDANIKAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSK 120

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           + +     K  F    F++          +       S      +     ++  +YE+ +
Sbjct: 121 LEAEDPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGKEK---DLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L  A++   +             LYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLIAAMIEPFEG-----------RLYDPACGSGGMFIQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V    S       +  +GQE E  T+ +    + +R +        +      S+ +
Sbjct: 227 AELVK---SKQGNLNSINVYGQEKEAATYRLAKMNLALRGISH------NLGDTNDSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL  G  F Y ++NPPF  K   D      E+   +      G P  S+ +  +++H+ 
Sbjct: 278 HDLHKGLYFDYVMANPPFNLKGWYD------ENLKNDARWADYGTPPESNANYAWILHIL 331

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+      G A  +L++  L      S   EIR+ L++ND +EAI+ LP +LF  T+I
Sbjct: 332 SHLK---PSNGVAGFLLANGAL----NDSDTLEIRKKLIQNDKVEAIIVLPRELFITTDI 384

Query: 404 ATYLWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453
           +  LWIL+  K            R  ++  ++      + ++ E KK+  ++ +Q ++  
Sbjct: 385 SVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTWTENAVKGENKKKVRLSAEQIQRAA 444

Query: 454 DIYVSRENG 462
           +IY + ++ 
Sbjct: 445 NIYHTWQSE 453


>gi|52548302|gb|AAU82151.1| type I restriction-modification system DNA methylase [uncultured
           archaeon GZfos11A10]
          Length = 704

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 104/589 (17%), Positives = 221/589 (37%), Gaps = 68/589 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+      ++   +W  A+ L    ++   ++   ++    LR         +  +   
Sbjct: 1   MTQL-EHIEAIEKRLWGAADTLRANSNYASNEYFLPVMGLVFLRHAYSRYLAVKDGIEAN 59

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-----LESYIASFSDNA 111
                G    L  E F + +       +++        +             I    DN 
Sbjct: 60  LPTRDGKTRALLKEDFSRQSAIFLQPNAQFDHLVALPDSEDRAKAIIWAMESIEGDYDNL 119

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +    ++           +L ++ +  +  EL    V   V   IYE+ + +F  + +
Sbjct: 120 RGVLPKSEYQEL-----DNDVLGQLLRTLNPDEL--KRVSGDVFGRIYEYFLTQFADQKA 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V L   +L                T+ DP CG+GG    +   VA+ G
Sbjct: 173 HDGGEFFTPISLVSLIAHVLDPESG-----------TVLDPACGSGGMFVQSARIVAEHG 221

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-K 290
            +      L   G E    T  +    + +  LE D ++ +        T  +D      
Sbjct: 222 QN--PTDRLTFRGLEKNATTIRLAKMNLAVHGLEGDIQKAI--------TYYEDPHELVG 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + ++NPPF    E D D V+ + +            K+S+G+ +++ +  + L    
Sbjct: 272 KADFVMANPPFNVD-EIDADKVKTDVRLPFGLPGVNKKDKVSNGNYVWISYFYSYL---- 326

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  GRA  V+SS       AG GE+++R+ L+E   ++ +VA+ ++ F+   +   LW L
Sbjct: 327 NEKGRAGFVMSSQA---SSAGGGEAKVRQKLVETGDVDVMVAIRSNFFYTRTVPCELWFL 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-IYVSR-ENGKFSRML 468
           +  K E  R KV +I+A +++  +    +K    + +Q++ +L  +++ R +  K+  ++
Sbjct: 384 NRDKPEAHRDKVLMIDARNIYRKV---TRKIYDFSPEQQQNLLAIVWLYRGQTEKYLDLV 440

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFW---------L 516
                GY R  +          D++G       +       L+   Q F           
Sbjct: 441 S----GYCRHTLDEGAGCFSTEDESGETIQPLPDFAAALDTLTSTLQPFLSTLADNAAHA 496

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
           ++ K ++  +  +       ++++   EA   + K +   +   ++   
Sbjct: 497 EVQKELVDALPAFHADVEAFQQALTEQEAAWKRQKTTNGDLKQAVDCLA 545


>gi|268322725|emb|CAX37460.1| Pseudogene of Type I restriction enzyme mprotein (N-terminal part)
           [Mycoplasma hominis ATCC 23114]
          Length = 388

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 151/416 (36%), Gaps = 55/416 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----RSAV 55
           M         L   IW  A  L G     DF + +L     R +   +          A 
Sbjct: 1   MAINNQERDELHKKIWDIANRLRGSIDGWDFKQYVLGIMFYRYISENIATYANKRQHQAG 60

Query: 56  REKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
            E +     S+ +    +  +      F   SE  ++ + +  T N L   + +      
Sbjct: 61  IEDFDYTTLSDEEALTGKDDLINEKGFFILPSELFINVVKNATTNNCLNETLDNIFQNIE 120

Query: 108 --------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHP-DTVPDRVM 155
                    ++   +F D D +S        E+   L  I +  + ++L           
Sbjct: 121 SSAKGQQSENDFSGLFNDVDVNSQKLGRSVDERNKKLAAILQEIAAMKLGNYQDNSIDAF 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   ++ TP++V  L T + +     +          +YDP CG
Sbjct: 181 GDAYEYLMSMYASNAGKSGGEYFTPQEVSELLTKIAVFNKKKVN--------RVYDPACG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L   +  +               +GQE+   T+ +C   M +  +  D     + +
Sbjct: 233 SGSLLLQTIKVLGKENIKDG------FYGQEVNLTTYNLCRINMFLHDIGFDKFNIYNGD 286

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
                + S +    + F   +SNPP+  KWE + + +    +     RF P   L   S 
Sbjct: 287 TLL--SPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPLLINDQ-----RFSPAGILAPKSK 339

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
               F++H  + L       G AAIV     ++ G A   E +IR++L+EN+ I+A
Sbjct: 340 ADFAFILHSLSWLAT----DGVAAIVCFPGIMYRGGA---EQKIRQYLVENNFIDA 388


>gi|146281028|ref|YP_001171181.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145569233|gb|ABP78339.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 515

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 195/568 (34%), Gaps = 78/568 (13%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDF-GKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + + +   +W   + L  D   ++D+  +++L    ++               +Y     
Sbjct: 2   TNSDIVQKLWNLCDVLRDDGINYSDYVTELVL-LLFIKM--------------EYEQVQN 46

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           ++       + A +         L+     N   +    +     N+  +      +   
Sbjct: 47  NDSFAHKLPEGARWP-------DLAGKSGLNLLGHYRQMLLDLGKNSDPLIAAIY-ADAQ 98

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL++   L ++ K+  GI+    +     + ++YE L+ +  SE   GA  + TPR ++
Sbjct: 99  TRLKEPRHLEQLIKSLDGIDWF--SARQDGLGDLYEGLLEKNASETKSGAGQYFTPRPLI 156

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--------I 236
                 L           P    T+ DP  GT GFL  A  ++      H          
Sbjct: 157 DSIINCL----------KPQPGETIQDPAAGTAGFLIAADAYIKRHTDDHYDLDAKAQAF 206

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +E D    +      G T +       +    L
Sbjct: 207 QRNRAFVGVELVPGTRRLALMNTLLHSMEGDEEGVVHLGNALGQTGAN----LPKVDVIL 262

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGRA
Sbjct: 263 SNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 306

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---R 413
           A+VL  + LF    G   +++RR LL+   +  I+ LPT +F+   + T +         
Sbjct: 307 AVVLPDNVLFEAGVG---TDVRRDLLDKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTQD 363

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              + +G  Q +   DL +++ + G KR        +   D Y    N   SR  +    
Sbjct: 364 NPRQEQGCTQRVWIYDLRSNMPSFG-KRTPFGAQHLKPFEDAYGEDANSNSSRAENVEGI 422

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           G   +   R     FI ++        DI+W K +    +  L   + +  +        
Sbjct: 423 G--ELSRFRVFTRDFIRERGD----SLDISWLKDADSLDAADLPAPEVLAGEAMAELTEA 476

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFI 561
               E +        +V A K  +   +
Sbjct: 477 LHELEELMKALGAGDEVAAQKQLMAEVM 504


>gi|298253897|ref|ZP_06977484.1| type I restriction-modification system, methyltransferase subunit
           [Gardnerella vaginalis 5-1]
 gi|297532040|gb|EFH71015.1| type I restriction-modification system, methyltransferase subunit
           [Gardnerella vaginalis 5-1]
          Length = 535

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/485 (20%), Positives = 186/485 (38%), Gaps = 61/485 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAVREKY 59
           E    A ++ + ++   + L        F     ++L    LR +    E    ++R+  
Sbjct: 5   ETAEKALNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIESLRKTL 64

Query: 60  LAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESYIASF 107
           +  G    D             A  ++    E   ST+ +T         +   S +   
Sbjct: 65  IEQGLDPDDENIRAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSRLEEE 124

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
               K  F    F++          +       S      +     ++  +YE+ ++ F 
Sbjct: 125 DPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGEEK---DLIGYVYEYFLKEFA 181

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++   +F TP DVV L  A++   +            TLYDP CG+GG    +   V
Sbjct: 182 VNATKEEGEFYTPHDVVKLIAAMIEPFEG-----------TLYDPACGSGGMFIQSAELV 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               S       +  +GQE E  T+ +    + +R +        +      S+ + DL 
Sbjct: 231 K---SKQGNLNSINIYGQEKEAATYRLAKMNLALRGISH------NLGGTNDSSFTHDLH 281

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G  F+Y ++NPPF  K   D++                G P  S+ +  +++H+ + L+
Sbjct: 282 KGLYFNYIMANPPFNLKGWYDENLKNDPRWAD------YGTPPESNANYAWILHILSHLK 335

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G A  +L++  L      S   EIR+ L++ND +EAI+ LP +LF  T+I+  L
Sbjct: 336 ---PSNGVAGFLLANGAL----NDSDTLEIRKRLIQNDKVEAIIVLPRELFITTDISVTL 388

Query: 408 WILSNRKT---------EERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYV 457
           WIL+  K            R  ++  ++       +++ E KK+  ++ +Q +   DIY 
Sbjct: 389 WILNQNKNGGKYHDRNLRNRDHEILFMDLRTWTEHAVKGENKKKVRLSAEQIQHAADIYH 448

Query: 458 SRENG 462
           + ++ 
Sbjct: 449 TWQSE 453


>gi|291546500|emb|CBL19608.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 552

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 63/484 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAVREKY 59
           + T  A ++ N ++   + L        F     ++L    LR +    E     +++  
Sbjct: 5   KTTEKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIENLKQTL 64

Query: 60  LAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESYIASF 107
              G    D             A  ++    E   ST+ ST         +     +   
Sbjct: 65  KEQGLDPEDENIRAAFFDDATFADGTYNLPPEARWSTIISTPAPQLNVALDTALQRLEEE 124

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
               K  F    F++          +       S      +     ++  +YE+ ++ F 
Sbjct: 125 DPQLKGCFVKGTFTARNLAANDIKKIVDEVNKISHKTFGEEK---DLIGRVYEYFLKEFA 181

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++   +F TP DVV L   ++   D            TLYDP CG+GG    +   V
Sbjct: 182 VNATKEEGEFYTPHDVVQLIATMIEPYDG-----------TLYDPCCGSGGMFIQSAELV 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               S       +  +GQE EP T+ +    + +R +        +   +  S+ + DL 
Sbjct: 231 K---SKQGNLNGINVYGQEKEPATYRLAKMNLALRGISH------NLGEEADSSFTHDLH 281

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
            G  F+Y ++NPPF  K   + +           GR+     P  S+ +  +++H+ + L
Sbjct: 282 KGLHFNYIMANPPFNLKGWYNDNL-------KNDGRWSDYQTPPESNANYAWILHILSHL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G A  +L++  L      S   EIR+ L++ND IEAIV LP +LF  T+I+  
Sbjct: 335 K---KTDGVAGFLLANGAL----NDSDTLEIRKELIQNDKIEAIVVLPRELFITTDISVT 387

Query: 407 LWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIY 456
           LWIL+  K            R  ++  ++      + ++ E KK+  ++ +Q  +  DIY
Sbjct: 388 LWILNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESKKKVRLDTEQIEKAADIY 447

Query: 457 VSRE 460
            + +
Sbjct: 448 HTWQ 451


>gi|218677780|ref|ZP_03525677.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium
           etli CIAT 894]
          Length = 251

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/259 (47%), Positives = 163/259 (62%), Gaps = 17/259 (6%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E+  +C + ML+   + +       NI  G+TL++D    +RFHY LSNPP+G  W
Sbjct: 1   ELNGESFGICKSDMLVTGHDPE-------NIAFGNTLTQDAHKDRRFHYMLSNPPYGVDW 53

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K ++ +  E    G+ GRFG GLP+ISDG +LFL H+ +K+      G R  IV++ SP
Sbjct: 54  KKYQEPIRDEAATQGKDGRFGAGLPRISDGQLLFLQHMISKMRTD-EIGSRIGIVMNGSP 112

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRRW+LE+D IEAIVALPTDLF+ T I TY+W+L+NRK  +RRGKVQL
Sbjct: 113 LFTGGAGSGESEIRRWMLESDWIEAIVALPTDLFYNTGIQTYVWLLTNRKERKRRGKVQL 172

Query: 425 INAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476
           I+A+    W  +R N G KRR I DD R  I  I+    NG       S++ D   FGYR
Sbjct: 173 IDASGERFWAPMRKNLGSKRREIRDDGRETITHIFHETANGGGPWSAVSKIFDASDFGYR 232

Query: 477 RIKVLRPLRMSFILDKTGL 495
            I+V RPLR++F      +
Sbjct: 233 EIRVERPLRLNFQSSPERI 251


>gi|93007189|ref|YP_581626.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92394867|gb|ABE76142.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 526

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 170/480 (35%), Gaps = 49/480 (10%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           S   L + +W  A++L         ++   +L    LR ++   E  +  ++E       
Sbjct: 4   SIKQLESDLWNAADNLRANSTLTAAEYKDPLLGLVFLRFVQNRHEDAKVKIQESLAINPR 63

Query: 65  SNIDLE--SFVKVAGYSFYNTSEYSLSTLGS-------TNTRNNLESYIASFSDNAKAIF 115
           +    E      VA  S     +     L +           NN    I     +   I 
Sbjct: 64  TGQKREVTKDDFVAAGSILLPEKAKYDYLAALPESENIAEAINNAMKLIEEEYPSLVGIL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EG 173
                     ++    LL  + + F+   +        +   IYE  + +F  + +  + 
Sbjct: 124 PKNY------QVFDNKLLRDLVRVFNKDAVR--KAKGDIFGRIYEFFLMKFSMQGAGAQE 175

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V+L    +  PD  +          ++DP CG+GG      + +     +
Sbjct: 176 GGEFFTPPSLVNLIVNFI-QPDHGI----------IHDPACGSGGMFVQTAHFIQGHMPN 224

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
             +   +  +G EL+     +    + +  +E       S                 +  
Sbjct: 225 KSVNEAITVYGTELKSNNTKLAKMNLAVHGIEGAIIESNSFYTNPHDL-------NGKCD 277

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       K+    E      G        I +G+ L++ +  + L    N  
Sbjct: 278 FVMANPPFNVSGIDGKNKFLTEDARLPFGAPLTKGGTIGNGNYLWIQYFHSYL----NKT 333

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V++SS      AG  E  IR+ L+E   +E IV++  + F+  ++  ++W  +  
Sbjct: 334 GRAGFVMASSA---TDAGHAEKLIRQQLIETGDVECIVSIANNFFYTRSLPCHVWFFNKE 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  E + K+ +I+A + +  + +  +     ++DQ   +  +  +    +     D   F
Sbjct: 391 KKAENKDKILMIDARNTYRKVSSTIQ---DFSEDQLEGLTALINAFRGDELGVSKDNEWF 447


>gi|260767610|ref|ZP_05876546.1| N-6 DNA methylase [Vibrio furnissii CIP 102972]
 gi|260617510|gb|EEX42693.1| N-6 DNA methylase [Vibrio furnissii CIP 102972]
          Length = 713

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 194/508 (38%), Gaps = 55/508 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   +  ++   +WK+A++L  + +    ++   ++    LR         +  +  +
Sbjct: 1   MAQL-ENIEAIEKRLWKSADNLRANSELASNEYFLPVMGLIFLRHAYSRYLAVKEEIIAE 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFED 117
             + GG   +L         + +   E     L + T+     E+ I +     K   + 
Sbjct: 60  LPSRGGKTRELTKEDFSQKSAIFLALEAQFDYLIALTDADKRAEAIIQAMESIEK---DY 116

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGA 174
            +    + + E   +   +        L+P+        +   IYE+ +  F  + +   
Sbjct: 117 KNLKDQLPKQEYNNIPNDVLGVLLRT-LNPEELKQASGDIFGRIYEYFLTEFADQGAHDG 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L    +L+PD             ++DP CG+GG    + + +     + 
Sbjct: 176 GEFFTPVSLVQLLVN-VLEPDHG----------KIFDPACGSGGMFVQSAHFMERNAQN- 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RF 292
             P  L  +G E    T  +    + +  LE +         +   T   D   G     
Sbjct: 224 --PQELTFYGHEKNRVTTRLAKMNLAVHGLEGNVE-----GGESAITYYNDPHEGLFGTV 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPN 351
            Y ++NPPF    E D D V+K+      G  G    K  S+ + L++ +  + L    N
Sbjct: 277 DYVMANPPFNVD-EVDADKVKKDQARLPFGLPGVNKNKKVSNANYLWIQYFYSYL----N 331

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRA  V+SS       AG  E+++R  L++   ++ +V +  + F+  ++   LW L 
Sbjct: 332 DTGRAGFVMSSQA---SSAGRDEAKVREQLVKTGDVDIMVDVRGNFFYTRSVPCQLWFLD 388

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K    + KV +++A +++  +               R+I D    ++    + +  YR
Sbjct: 389 KNKPANLKNKVLMLDARNVYRKVT--------------RKIYDFSPEQQKNLTAIVWLYR 434

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLE 499
             G R I+++R      +L+     ++E
Sbjct: 435 NEGKRFIELVREYISRSLLEAQQCGKIE 462


>gi|290967797|ref|ZP_06559350.1| putative type I restriction-modification system, M subunit
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290782156|gb|EFD94731.1| putative type I restriction-modification system, M subunit
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 535

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/489 (20%), Positives = 189/489 (38%), Gaps = 63/489 (12%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAV 55
           M +   +  +L   N ++   + L        F     ++L    LR +    E    A+
Sbjct: 1   MAKKKPATKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60

Query: 56  REKYLAFGGSNIDL---ESFVKVA---GYSFYNTSEYSLSTLGSTNT------RNNLESY 103
           R+  +    +  D     +F + A     ++    E   ST+ +T         +   + 
Sbjct: 61  RKTLIEQDLNPDDENIRAAFFEDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALTR 120

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +       K  F    F++          L       S      +     ++  +YE+ +
Sbjct: 121 LEEEDPQLKGCFIKGTFTTRNLAANDIKKLVDEVNKISHKAFGEEK---DLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L  A++   +            TLYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLMAAMIEPFEG-----------TLYDPACGSGGMFIQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V            +  +GQE E  T+ +    + +R +        +      S+ +
Sbjct: 227 AELVKAT---QGNLNSINIYGQEKEAATYRLAKMNLALRGISH------NLGGTNDSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL  G  F+Y ++NPPF  K   D      E+   +      G P  S+ +  +++H+ 
Sbjct: 278 HDLHKGLYFNYIMANPPFNLKGWYD------ENLKNDARWADYGTPPESNANYAWILHIL 331

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+      G A  +L++  L      S   EIR+ L++ND +EAI+ LP +LF  T+I
Sbjct: 332 SHLK---PSNGVAGFLLANGAL----NDSDTLEIRKKLIQNDKVEAIIVLPRELFITTDI 384

Query: 404 ATYLWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453
           +  LWIL+  K            R  ++  ++      + ++ E KK+  ++ +Q +   
Sbjct: 385 SVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTRTENAVKGENKKKVRLSAEQIQHAA 444

Query: 454 DIYVSRENG 462
            IY + ++ 
Sbjct: 445 AIYHTWQSE 453


>gi|164688286|ref|ZP_02212314.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM
           16795]
 gi|164602699|gb|EDQ96164.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM
           16795]
          Length = 317

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 135/313 (43%), Gaps = 35/313 (11%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+GG    ++  V +   H      +  +GQE  P T  +    M IR +E+  
Sbjct: 12  VYDPACGSGGMFVQSLKFVEE---HSGNAFDISVYGQESNPTTWKLAKMNMAIRGIEN-- 66

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +   +   T  +DL    +  + L+NPPF +        ++         R+  G 
Sbjct: 67  ----NLGSKNADTFHEDLHKNLKADFILANPPFNQSDWGQPLLLDD-------PRWKWGT 115

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   + +  ++ H+ +KL    +  G+A +VL++  L      S E +IR+ +L NDL++
Sbjct: 116 PPAGNANYGWIEHMLDKL----SQKGKAGVVLANGSL--SSNTSNEGKIRKTILNNDLVD 169

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            IVALP  LF+ T I   +W  +  K  + +G+   I+A  +   +    ++ R ++D+ 
Sbjct: 170 CIVALPDKLFYTTGIPVCIWFFNRDK--KHKGQTLFIDARKMGDMV---NRRLRELSDED 224

Query: 449 RRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            ++I D Y+S +  +       F ++ +          +L P R   I D         +
Sbjct: 225 IKKIADTYISWQKEEGYEDVKGFCKVANMDEIKENDY-ILTPGRYVGIEDVEDDGEPFEE 283

Query: 502 ITWRKLSPLHQSF 514
              R    L + F
Sbjct: 284 KMERLTKTLSEQF 296


>gi|254787777|ref|YP_003075206.1| typeI restriction-modification system, methylase subunit
           [Teredinibacter turnerae T7901]
 gi|237683921|gb|ACR11185.1| putative TypeI restriction-modification system, methylase subunit
           [Teredinibacter turnerae T7901]
          Length = 716

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 189/507 (37%), Gaps = 46/507 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   +  ++   +WK+A+ L  + +    ++   ++    LR         +  +   
Sbjct: 1   MAQL-ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRFLSVKDDIVAT 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
             +  G   +L         + Y   E     L +    +N    I    D+ +A  +  
Sbjct: 60  LPSRSGKTRELTKEDFSKKSAIYLKPEAQFDYLIALTDADNRAEAIIHAMDSIEA--DYT 117

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGAE 175
           +  + + + E   +   +        L+PD +      +   IYE+ + +F  + +    
Sbjct: 118 NLRNQLPKQEYNNIPNDVLGMLLRT-LNPDELKKATGDIFGRIYEYFLTQFADQGAHDGG 176

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V L    +L+PD             ++DP CG+GG    + + +     H +
Sbjct: 177 EFFTPVSLVQLIVN-VLEPDHG----------KIFDPACGSGGMFVQSAHFMER---HAQ 222

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            P  L  +G E    T  +    + +  LE +     +                    Y 
Sbjct: 223 DPHELTFYGHEKNRVTTRLAKMNLAVHGLEGNVEGGEAAITYYTFAQEPHEGLFGTADYV 282

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF    E D + ++ + +    G  G    K  S+ + L++ +  + L    N  G
Sbjct: 283 MANPPFNVD-EVDAEKIKADKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----NDTG 337

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA  V+SS       AG  E+++R  L++   ++ +V +  + F+   +   LW L+  K
Sbjct: 338 RAGFVMSSQA---SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNKNK 394

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
               + KV +++A +++  +               R+I D    ++    + +  YR  G
Sbjct: 395 PAYLKDKVLMLDARNVYRKVT--------------RKIYDFSPEQQQNLTAVVWLYRGEG 440

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEAD 501
            R I +L+      + +     +   D
Sbjct: 441 ARFIALLQEYVTRALREAEHCHQWPED 467


>gi|153811191|ref|ZP_01963859.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174]
 gi|149832689|gb|EDM87773.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174]
          Length = 535

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 63/484 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAVREKY 59
           + T  A ++ N ++   + L        F     ++L    LR +    E     +++  
Sbjct: 5   KTTEKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIENLKQTL 64

Query: 60  LAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESYIASF 107
              G    D             A  ++    E   ST+ ST         +     +   
Sbjct: 65  KEQGLDPEDENIRAAFFDDATFADGTYNLPPEARWSTIISTPAPQLNVALDTALQRLEEE 124

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
               K  F    F++          +       S      +     ++  +YE+ ++ F 
Sbjct: 125 DPQLKGCFVKGTFTARNLAANDIKKIVDEVNKISHKTFGEEK---DLIGRVYEYFLKEFA 181

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++   +F TP DVV L   ++   D            TLYDP CG+GG    +   V
Sbjct: 182 VNATKEEGEFYTPHDVVQLIATMIEPYDG-----------TLYDPCCGSGGMFIQSAELV 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               S       +  +GQE EP T+ +    + +R +        +   +  S+ + DL 
Sbjct: 231 K---SKQGNLNGINVYGQEKEPATYRLAKMNLALRGISH------NLGEEADSSFTHDLH 281

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
            G  F+Y ++NPPF  K   + +           GR+     P  S+ +  +++H+ + L
Sbjct: 282 KGLHFNYIMANPPFNLKGWYNDNL-------KNDGRWSDYQTPPESNANYAWILHILSHL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G A  +L++  L      S   EIR+ L++ND IEAIV LP +LF  T+I+  
Sbjct: 335 K---KTDGVAGFLLANGAL----NDSDTLEIRKELIQNDKIEAIVVLPRELFITTDISVT 387

Query: 407 LWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIY 456
           LWIL+  K            R  ++  ++      + ++ E KK+  ++ +Q  +  DIY
Sbjct: 388 LWILNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESKKKVRLDTEQIEKAADIY 447

Query: 457 VSRE 460
            + +
Sbjct: 448 HTWQ 451


>gi|120436929|ref|YP_862615.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117579079|emb|CAL67548.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 526

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/545 (17%), Positives = 190/545 (34%), Gaps = 70/545 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59
                L   +W  A+DL  + K    ++   +L   LLR  +   E  +  +  K     
Sbjct: 4   EQLKDLEKQLWDAADDLRANSKLTAAEYKDPLLGLVLLRFAQNRYEEAKIYIENKLPVNP 63

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAI 114
                     E F+          ++Y       ++       N     + +   +   I
Sbjct: 64  RTGKKRESTKEDFLGAGAIKLPEKAQYDYLANLPSDISMPEKVNEAMKLVETEYPDLAGI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--E 172
                      +     LL  + + F+   +        V   IYE  + +F  + +  +
Sbjct: 124 LPKNY------QEMDEALLRSLVRTFNSDAV--KKASGDVFGRIYEFFLMKFSMQGAGAQ 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V+L    +  PD  +          ++DP CG+GG    + + + D   
Sbjct: 176 EGGEFFTPPSLVNLIVNFI-QPDHGI----------IHDPACGSGGMFVQSAHFIQDH-E 223

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +  +   +  +G E +     +    + I  +E        K I + S  S       + 
Sbjct: 224 NRNVNEAITVYGTEYKSNNTKLAKMNLAIHGIEG-------KIINENSYYSDPHHLVGKC 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       K+    E K    G    G   IS+G+ L++ +  + L    N 
Sbjct: 277 DFVMANPPFNMDKIDAKNKFLAEDKRLPFGPPLTGKGTISNGNYLWIQYFHSYL----NK 332

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  V++SS      AG  E  IR  L+E   ++ IVA+  + F+  ++  +LW    
Sbjct: 333 NGKAGFVMASSA---TDAGHAEKRIREQLVETGDVDCIVAVGNNFFYTRSLPCHLWFFDK 389

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--------------- 457
            K +E R K+ +I+A +++  + +          +    I+ +Y                
Sbjct: 390 GKKKENRDKILMIDARNVYRKVSSTVNDFSPDQMEGLTAIIQMYRGEQPEVSEDNAWIKE 449

Query: 458 ------SRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                  ++     +++D          +   R + +S  +D     +       ++L+ 
Sbjct: 450 HFPEGNYKDVEGLCKIVDLEEVRGQDYSLTPGRYVGVSIEIDHDFDYQGRMSEINKELAQ 509

Query: 510 LHQSF 514
           L+   
Sbjct: 510 LNDEA 514


>gi|167957101|ref|ZP_02544175.1| type I restriction-modification system, M subunit [candidate
           division TM7 single-cell isolate TM7c]
          Length = 440

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 133/395 (33%), Gaps = 56/395 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----- 58
                  L N IWK A +L G     DF   +L F   R +   L    +A   K     
Sbjct: 7   KEQERTKLHNTIWKIANELRGSVDGWDFKAYVLGFLFYRFISENLVNYINAEERKTGATD 66

Query: 59  --YLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF-------- 107
             Y        +      V    FY   SE   +         NL   ++          
Sbjct: 67  FSYAELSDDQAEFGRKDTVNDKGFYILPSELFENVRKRAKNDENLNETLSKIFRNIEQSA 126

Query: 108 -----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD---RVMSNI 158
                 D+ + +F+D D +S            ++ K  + I EL      D       + 
Sbjct: 127 KGFDSEDDFRGLFDDLDVNSNKLGPTVTRRNERLVKLMNAIGELELGKFEDNTIDAFGDA 186

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+  +     +   +F TP++V  L   + +    ++ K        +YDP  G+G 
Sbjct: 187 YEYLMTMYAGNAGKSGGEFFTPQEVSELLAKITVVGKTSVNK--------VYDPAAGSGS 238

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +               +GQE+   T+ +C   M +  +  +       NI  
Sbjct: 239 LLLKFAKVLGKDNVRQG------FYGQEINITTYNLCRINMFLHDINYEK-----FNIAH 287

Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL        + F   +SNPP+  KW+ D +            RF P   L   S   
Sbjct: 288 GDTLKDPKHWDDEPFDAIVSNPPYSIKWDGDSNPTLIND-----PRFSPAGVLAPRSKAD 342

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           + F MH+ + L    +  G AAIV     L+ G A
Sbjct: 343 LAFTMHMLSWL----SESGTAAIVEFPGALYRGGA 373


>gi|120552975|ref|YP_957326.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120322824|gb|ABM17139.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 539

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 176/485 (36%), Gaps = 81/485 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAFGGS 65
           +   +   +W   + L       ++   +    LL  ++   E T +   +K+ L  G  
Sbjct: 2   TNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGTLQKHPLPEGCR 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFEDF 118
             D     K  G +   T +  L  L       G+    + L + I              
Sbjct: 60  WTD---LSKQDGQNLLETYKRMLLALSTGKDGQGNQIHDDPLITAI-------------- 102

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +S    RL +   L ++      I+    +     + ++YE L+ +  +E   GA  + 
Sbjct: 103 -YSDAQTRLREPRHLRQMVATLDQIDWF--SAQKDGLGDLYEGLLEKNANETKSGAGQYF 159

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCG 231
           TPR +++     L           P     + DP  GT GFL  A  ++        D  
Sbjct: 160 TPRALINTMVRCL----------KPQPGERIQDPAAGTAGFLIAAHEYIKGQTDDLYDLT 209

Query: 232 SHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           +  K       + G EL P T  + +   L+  +E D    +      G T +      +
Sbjct: 210 TEQKAFQTTKAYVGIELVPGTRRLALMNCLLHGMEGDAEGVVHLGNALGQTGA----GLE 265

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +    L+NPPFG     D      +              K S+  + FL H+   L+   
Sbjct: 266 KADVILANPPFGTSKGGDASITRDDL-----------TYKTSNKQLAFLQHIYRNLKP-- 312

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+VL  + LF    G   +++RR L+    +  I+ LPT +F+   + T +   
Sbjct: 313 --GGRAAVVLPDNVLFEAGVG---TDVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFF 367

Query: 411 SNRKTEERRGK---VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
           +     ++  +    + +   DL T++ + G KR    D   +   D+Y         R+
Sbjct: 368 TKGSAADKYQEEHCTEHVWVYDLRTNMPSFG-KRTPFGDQHLKPFEDVYGDSPNGDSERK 426

Query: 461 NGKFS 465
            G++S
Sbjct: 427 EGEYS 431


>gi|304310387|ref|YP_003809985.1| Type I restriction-modification system DNA methyltransferase
           subunit [gamma proteobacterium HdN1]
 gi|301796120|emb|CBL44326.1| Type I restriction-modification system DNA methyltransferase
           subunit [gamma proteobacterium HdN1]
          Length = 731

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 169/458 (36%), Gaps = 50/458 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L N +W+ A+ L  + K    ++   +L    LR  +   +     + E  +    
Sbjct: 2   NVQQLENELWEAADQLRANSKLTAAEYSMPVLGLIFLRHADNRFKAYLPEI-EADIPPQV 60

Query: 65  SNIDLESFVK---VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                E  +K       + Y         + S      +   I +  D  +A +     S
Sbjct: 61  PAAQREELIKLGFQGKAAIYLPEAARFDRIASLPQGAKVGEIIDAAMDAVEAEYPV--LS 118

Query: 122 STIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             + R     +  LL  + K F    +        V   IYE+ + +F    ++   +F 
Sbjct: 119 GALPRGYAAFEPDLLADLVKIFDRPAI--KAATGDVFGRIYEYFLNKFAMSGAQEGGEFF 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V +   ++                 + DP CG+ G      + + D   H  +  
Sbjct: 177 TPPSLVRMIVGVIEPG-----------HGLVLDPACGSAGMFVQTGHFIEDV-RHQVVND 224

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLS 297
            +  HGQE       +    +++  L++        NI+QG+T          +  + ++
Sbjct: 225 SVTFHGQEKSDTNTKLARMNLVVHGLDAS-------NIRQGNTFYDQAEHLIGQCDFVMA 277

Query: 298 NPPFGKKWEKDKD---AVEKEHKNGELGRFGPGLPKI----SDGSMLFLMHLANKLELPP 350
           NPPF       K     V+     G L    PG        S+ + L++ +    L    
Sbjct: 278 NPPFNVDGVDTKKVEAQVDAVANGGRLPFGLPGTNAKTGAISNANSLWVQYFYAYL---- 333

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  GRA  V++SS      AG+ + +IR  L++   ++ ++A+    F+  ++   LW  
Sbjct: 334 NDTGRAGFVMASSA---SDAGNKDRDIREQLVKTGHVDVMMAIGNKFFYTRSLPCTLWFF 390

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
              K ++ + +V +I+A +++T +        +  D+Q
Sbjct: 391 DKGKPQDLQNQVLMIDARNVYTVVSARSH---VFTDEQ 425


>gi|237654256|ref|YP_002890570.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|237625503|gb|ACR02193.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 530

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 105/522 (20%), Positives = 192/522 (36%), Gaps = 68/522 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+  T +   +   +W     L  D   +  +   +     L+ ++   +  R  + +  
Sbjct: 1   MSNPTAAL-DIGAKLWSLCHVLRDDGVTYHQYLSELTYLLFLKMMKETGQEERLRIWKAK 59

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               GS  + ++           T    L    + +  +  +  +  +  + +   ++  
Sbjct: 60  DKKQGSPKEEQA----------GTRWDDLLGASAPDRLDLYKEMLLDYGLHGRGAVQEIY 109

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            ++    + K   L K+  +   ++ +  +V    + ++YE L+ R   E   GA  + T
Sbjct: 110 ANANTF-ITKPATLSKLVTDIDRLDWY--SVDRDDLGDLYEDLLERNAGEKKSGAGQYFT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++    +++           P +   + DP  GT GFL  A N++            
Sbjct: 167 PRHLIDSIVSVM----------KPQLGDVIQDPAAGTCGFLIAANNYLRQHNDFDSLSDE 216

Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +       HG EL  +TH + +  ML+  +E          +  G TLS D       
Sbjct: 217 AQRKYRHQTFHGMELVQDTHRLALMNMLLHGIEG--------GVTYGDTLSDDHKGLPPA 268

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              LSNPPFG K            K G L   G    + S+    FL H+   L+     
Sbjct: 269 TLILSNPPFGTK------------KGGGLPTRGDLTFETSNKQFAFLQHIYRALKP---- 312

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRAA+VL  + LF    G+   +IRR L++   +  I+ LPT +F+   + T +   + 
Sbjct: 313 GGRAAVVLPDNVLFESNIGA---DIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTR 369

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR- 471
             T+  +G  + +   D+  ++   G KR     D  R   D+  S+   KF  +     
Sbjct: 370 GDTD--KGNTKEVWVYDMRANMPAFG-KRTPFTRDYFRTPPDVPASQPRDKFEDVFGSDP 426

Query: 472 -----TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                    R+          F  ++        DI+W K S
Sbjct: 427 RGGPAALAARQDTGEAGRWRRFTREQIAQRGDSLDISWLKDS 468


>gi|313664976|ref|YP_004046847.1| type I restriction-modification system, M subunit [Mycoplasma
           leachii PG50]
 gi|312949714|gb|ADR24310.1| putative type I restriction-modification system, M subunit
           [Mycoplasma leachii PG50]
          Length = 355

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 148/370 (40%), Gaps = 37/370 (10%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSE 169
              IF  F+ S              I      +   P    D  ++  IYE+LI +F S 
Sbjct: 15  FNGIFSIFEKSLDKLGSNSKEQQETINNLLDTMNKIPTVKQDYDILGFIYEYLIAQFASS 74

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++              I ++YDPT G+G  L +  +    
Sbjct: 75  AGKKAGEFYTPHEVSDLMSKIVAHH------LKNRSIISVYDPTSGSGSLLLNIGDEFK- 127

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              ++K    +  + QEL+ ET  +    +++R +          +  +      +    
Sbjct: 128 --KYNKGSSPVSYYAQELKTETFNLTRMNLIMRNINPSEIHVRRGDTLEQDWPIFENEDL 185

Query: 290 KRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             +        +SNPP+ + W  +K   +  +          G+   +     FL+H   
Sbjct: 186 STYKRLTVDAVVSNPPYSQSWNSEKHTNDPRYVE-------YGIAPKTKADYAFLLHDLY 238

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    +  G  AIVL    LF G +   E +IR+ L+E   I+ I+ LP+++FF T I 
Sbjct: 239 HI----DPEGIMAIVLPHGVLFRGNS---EKQIRQKLIEKGQIDTIIGLPSNMFFGTGIP 291

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
           T + IL  +K       +  ++A+ L+        K    +  Q ++I D+  +R E  K
Sbjct: 292 TIIMILKKQKP---INDILFVDASQLYIK----EGKNNKFSQSQIKKIADVVNNRIEVEK 344

Query: 464 FSRMLDYRTF 473
           FSR++ +   
Sbjct: 345 FSRIVKFDEI 354


>gi|330881904|gb|EGH16053.1| Type I restriction-modification system DNA methyltransferase
           subunit [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 482

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 170/472 (36%), Gaps = 62/472 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLR----RLECALEPTRSAVREKY 59
                L + +W+ A+ L  + K   +++   +L    LR    R    LE   S++  + 
Sbjct: 4   QELQQLESDLWEAADQLRANSKLTASEYSMPVLGLIFLRHATTRFYALLEEVESSIPAR- 62

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKAIF 115
            A G    D          + Y         L     S N    +   + +  D+     
Sbjct: 63  -AVGQLREDRIKLGFQGKAAIYLPEIARYEYLAGLPASENIAAAIHEAMQAIEDSVTDQD 121

Query: 116 EDFDFSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +   +  + +        LL  + K F+   L        V   IYE+ +  F    ++
Sbjct: 122 GNKLLAGALPKNYHGLERDLLPDLIKIFNRPAL--QNTSGDVFGRIYEYFLNEFAKSGAQ 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V +    +++PD            T+ DP CG+ G      + + D   
Sbjct: 180 EGGEFFTPPSLVRMIVK-VIEPDHG----------TVLDPACGSAGMFVQTGHFMEDVRH 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291
                  +  +GQE       +    + +  LE             G+T  +D       
Sbjct: 229 KLTHDADITFYGQEKAEVNSKLARLNLAVHGLEGKILL--------GNTFYEDQHQLVGG 280

Query: 292 FHYCLSNPPFG------KKWEKDKDAVEKEH-KNGELG--------RFGPGLPKISDGSM 336
             + ++NPPF        K +     +E    K    G        R       IS+G+ 
Sbjct: 281 CDFVMANPPFNVDGVQVAKIKSQVGTLEDNPPKRLPFGLPGTAGKSRGKDATETISNGNS 340

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L++ +  + L    N  GRA  V+++S      AG+ + +IR+ L+E   ++ ++++   
Sbjct: 341 LWIQYFYSYL----NATGRAGFVMAASA---SDAGNKDRDIRQQLIETGHVDVMMSIGPK 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            F+  ++   LW     K +ER   V +I+A +++T +        +  ++Q
Sbjct: 394 FFYTRSLPCTLWFYDKSKPKERLDGVLMIDARNVYTVVSARSH---VFTEEQ 442


>gi|194324118|ref|ZP_03057892.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
 gi|194321565|gb|EDX19049.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
          Length = 345

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 134/384 (34%), Gaps = 48/384 (12%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + ++ + 
Sbjct: 1   MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYTELQSEE 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
            A      +      +    F+  ++   S L +           +     I   +++ K
Sbjct: 61  WADPEDKDEY-----LESNIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L           P     ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKML----------EPYKG-RVFDPCCGSGGMFVQSEKFVE--- 217

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           SH      +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 218 SHQGQINDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P   + +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGELLRND-------ARWQYGTPPAGNANYAWIQHFLYHL----A 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGES 375
             G A  VL+   L +  +G G++
Sbjct: 322 PTGVAGFVLAKGALTSNTSGEGDT 345


>gi|126667623|ref|ZP_01738592.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
 gi|126627892|gb|EAZ98520.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
          Length = 576

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 97/503 (19%), Positives = 179/503 (35%), Gaps = 74/503 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   +   +W   + L       ++   +    LL  ++   E T +   +K+    
Sbjct: 33  SNMTNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGTLKKH---- 86

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFD-- 119
                        G  +       L+     N  N+ +  + S S   ++       D  
Sbjct: 87  ---------PLPEGCRWT-----DLNGKSGINLLNDYKRILLSLSTGRDSDGTLVHNDPL 132

Query: 120 ----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               ++    RL +   L ++ K    I+    +     + ++YE L+ +  +E   GA 
Sbjct: 133 ISAIYTDAQTRLREPRHLEQMIKTLDQIDWF--SAQKDGLGDLYEGLLEKNANETKSGAG 190

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----- 230
            + TPR +++   A +           P     + DP  GT GFL  A  HV D      
Sbjct: 191 QYFTPRALINTMVACI----------KPQAGEMIQDPAAGTAGFLIAADQHVKDQTDQLF 240

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                           G EL P T  + +   L+  +E D    +      G+ L +   
Sbjct: 241 DLNARQQAFQRNDAFVGIELVPSTRRLALMNCLLHGMEGDEEGVI----HLGNALGQQGA 296

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K+    L+NPPFG     D      +              K S+  + FL H+   L+
Sbjct: 297 GLKKADVILANPPFGTSKGGDASITRDDL-----------TYKTSNKQLAFLQHIYRNLK 345

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGRAA+VL  + LF    G   +E+RR L+    +  I+ LPT +F+   + T +
Sbjct: 346 P----GGRAAVVLPDNVLFEAGVG---TEVRRDLMHKCNLHTILRLPTGIFYAQGVKTNV 398

Query: 408 WILSNRKTEERR---GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
              +     +++        +   DL T++ + G KR    +   +    +Y    NG+ 
Sbjct: 399 LFFTKGSATDKQQEENSTDNVWIYDLRTNMTSFG-KRTPFGEQHLKPFEAVYGDDSNGQS 457

Query: 465 SRMLDYRTFGYRRIKVLRPLRMS 487
            R     +F   +I +   ++++
Sbjct: 458 PRTEGEWSFHSDKIDLPEEIKVT 480


>gi|315187187|gb|EFU20944.1| Site-specific DNA-methyltransferase (adenine-specific) [Spirochaeta
           thermophila DSM 6578]
          Length = 332

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 124/346 (35%), Gaps = 46/346 (13%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT    + A+L   N +W+ A+ L G     ++  V+L    L+ +    E  R  + ++
Sbjct: 1   MTTNKPNGANLGFENKLWEMADKLRGHMDAAEYKHVVLGLIFLKYISDTFEAHRKQLLQE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNA 111
             A      +      +A   F+   E     + +   +       +     I   + + 
Sbjct: 61  PYADPEDRDEY-----LAANVFWVPPEARWEHIQAQAPQPTIGQVIDRAMEAIERENPSL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
           K +        T+ ++    L     K    I+L          +  +YE+ + RF +  
Sbjct: 116 KGVLPKDYSRPTLDKVRLGEL----VKLVGDIDLKARESGVKDPLGRVYEYFLGRFAAAE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G  +F TP+ VV L   ++           P     +YDP CG+GG    +   V   
Sbjct: 172 GKGGGEFYTPQCVVQLLVEMI----------EPYRG-RVYDPCCGSGGMFVQSEKFVEAH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IRR+++D             T  +DL    
Sbjct: 221 GGKLG---DIAIYGQESNPTTWRLAKMNLAIRRIDAD------LGPYAADTFFEDLHKDL 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +  + L+NPPF       +   E         R+  G+P  ++ + 
Sbjct: 272 KADFILANPPFNMSDWGGERLTED-------PRWKYGVPPANNANQ 310


>gi|118444367|ref|YP_878481.1| type I restriction-modification system DNA methylase [Clostridium
           novyi NT]
 gi|118134823|gb|ABK61867.1| type I restriction-modification system DNA methylase [Clostridium
           novyi NT]
          Length = 705

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 208/557 (37%), Gaps = 49/557 (8%)

Query: 9   ASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             +   +W  A+ L  + K    ++   +L    LR         +  + E   +  G  
Sbjct: 5   KKIERDLWDAADQLRANSKLTAAEYSMPVLGLIFLRYAYNRFLMVKEEIEENLPSRNGKK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIA 125
             +      +  + +         L S     ++   I +     +  +E    S  T  
Sbjct: 65  RPITKEDFESKSAIFLPEIARYDYLVSLTEDADIGKSINNAMKAIEKEYEKLKGSLPTNY 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +    LL ++ + F+  EL        V   IYE+ + +F    ++   +F TP  +V 
Sbjct: 125 TIFDNELLRELLRKFNSDELR--NAKGDVFGRIYEYFLNKFAMTGAQEGGEFFTPISLVQ 182

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   ++                 + DP CG+ G      + +   G+       +  +GQ
Sbjct: 183 MIVNVIEPEQG-----------IVLDPACGSAGMFVQTGHFIQSHGASAN--DKVTFYGQ 229

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKK 304
           E       +    M +  LE            +G+T  +D      + +Y ++NPPF   
Sbjct: 230 EKAELNTKLARMNMAVHGLEGKIL--------EGNTFYEDKHELLGKCNYVMANPPFNV- 280

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKIS----DGSMLFLMHLANKLELPPNGGGRAAIVL 360
              D    EK   +  L    PG+ K S    + + L++ +  + L    N  GRA  V+
Sbjct: 281 ---DGVDSEKIKTDPRLPFGLPGVNKKSKAVSNANYLWIQYFYSYL----NEKGRAGFVM 333

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           +SS      AG GE ++R  L++ + ++ I+++  + F+  ++   LW     K+E+++ 
Sbjct: 334 ASSA---TDAGHGEKDVRERLIKTNDVDVIISIGNNFFYTRSLPCTLWFFDKNKSEDKKD 390

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-IYVSR-ENGKFSRMLDYRTFGYRRI 478
           KV +I+A +++  +    +     +++Q + I   +++ R +N ++ +++      Y   
Sbjct: 391 KVLMIDARNIFRKV---NRTINDFSEEQLKNITSIVWLYRGQNERYLKLVAEYINDYSSK 447

Query: 479 KVLRPLRMSFILDK--TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
                 +     DK    + +LE   +++ ++  ++    +    + +            
Sbjct: 448 ANFINKKAILFEDKLHELIDQLERFNSFKLVADENKEIREEYYTSLKELQKDIDNYFVEK 507

Query: 537 KESIKSNEAKTLKVKAS 553
           +   +  E     VK +
Sbjct: 508 ETLNREIEDYQNWVKDN 524


>gi|86143513|ref|ZP_01061898.1| type I restriction-modification system specificity subunit
           [Leeuwenhoekiella blandensis MED217]
 gi|85829960|gb|EAQ48421.1| type I restriction-modification system specificity subunit
           [Leeuwenhoekiella blandensis MED217]
          Length = 513

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 105/514 (20%), Positives = 191/514 (37%), Gaps = 53/514 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           + +++ + IW  A  L  D     +G     I     L+  +   +P  +   +      
Sbjct: 2   TDSTIISKIWNLASVLRDDGVG--YGDYLEQITYLLFLKMADELNKPPYNKGLKFPKLKD 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +++            T ++   +        +  S +       K +     F+ +
Sbjct: 60  VDGNEIQD---------GETCDWETLSGKRGAELESFYSQLLRSLSTEKGMLGQI-FTKS 109

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L K+       + +   +   +   IYE L+++   +   GA  + TPR +
Sbjct: 110 QNKIQDPAKLLKVIDMIDREDWN--MMGADIKGKIYEGLLQKNAEDTKSGAGQYFTPRSL 167

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--- 240
           +    A +           P   +T+ DP CGTGGF   A + + +     K        
Sbjct: 168 IQAIVACV----------QPQPKKTIADPACGTGGFFLAAYDWIVEHHKLDKEEKQFLKN 217

Query: 241 -VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              HG E+   T  +C+  M +  +      D    I     L  D   GKRF Y L+NP
Sbjct: 218 NTFHGNEIVANTRRMCIMNMYLHNI---GEIDGEPFINPNDALIAD--DGKRFDYVLANP 272

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKK        E E +  +L        + S +  + FL H+  +L++     G+AA+
Sbjct: 273 PFGKKSSMTITNEEGEQEKEDLSYNRQDFWETSSNKQLNFLQHIKTQLKI----NGKAAV 328

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF G AG    E+R+ LL+   +  I+ LPT +F+R  +   +      K   +
Sbjct: 329 VLPDNVLFEGGAGE---EVRKQLLKTADLHTILRLPTGIFYRPGVKANVLFF-KNKPASK 384

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
               + I   D  T++ +  KK+ ++  D   + + +Y        S  ++ R   + + 
Sbjct: 385 EAWTREIWFYDYRTNVHHTLKKKPMLLSD-LEEFIKLYN-------SSNINNRKETWSKE 436

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                 R     D     +   DI W K   L  
Sbjct: 437 NEEGRWRKYTYEDIIARDKTSLDIFWLKDKSLTD 470


>gi|325678458|ref|ZP_08158075.1| N-6 DNA Methylase [Ruminococcus albus 8]
 gi|324109846|gb|EGC04045.1| N-6 DNA Methylase [Ruminococcus albus 8]
          Length = 290

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 164/306 (53%), Gaps = 23/306 (7%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS N + I +  DF   I +++K   L  + K FS ++L P T+ +  M  I+E LIR+F
Sbjct: 1   FSANVQDIIKSLDFDKQIDKMDKNNRLLSVVKAFSELDLDPKTIDNVKMGYIFEELIRKF 60

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                  A D  T RD++ L   +LL        +    I T+ D   GTGG L+ + N 
Sbjct: 61  SENA--EAGDHYTGRDIIKLMVNILLAEGCDDIFDDHKEI-TILDQAAGTGGMLSTSYNF 117

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +        +       GQE+ PE++A+CVA MLI+   ++       NI+   T+  D 
Sbjct: 118 IHRYNPTANV----RLFGQEINPESYAMCVAEMLIKGQNAE-------NIRMQDTMKADC 166

Query: 287 FTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           F  ++  + + NPPFG  W      E  + AV++E++ G  GRFG GLP   D  +LF+ 
Sbjct: 167 FPDRQMRFVIENPPFGTPWGGKDAAEGVEQAVKEENQKGFDGRFGAGLPGSGDMQLLFIQ 226

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              NK++      GRAAI+ + SPLF+G   SGES+IRRWLLENDLIEAI+ALP DLF+ 
Sbjct: 227 SAVNKMDNAL---GRAAIIENGSPLFSGGTSSGESQIRRWLLENDLIEAIIALPVDLFYN 283

Query: 401 TNIATY 406
           T I   
Sbjct: 284 TGILCC 289


>gi|323526112|ref|YP_004228265.1| adenine-specific DNA-methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383114|gb|ADX55205.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. CCGE1001]
          Length = 480

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 180/490 (36%), Gaps = 72/490 (14%)

Query: 9   ASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             +   +W     L  D   + ++   +     L+         +    E  L  G    
Sbjct: 6   NDIVAKLWNLCNVLRDDGVTYHEYVTELTYLLFLKM-------AKETGTEDRLPEGYRWD 58

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           DLES         Y      L T GS  T+                      F++  + +
Sbjct: 59  DLESKAAPERLEAYKVMLIHLGTHGSIITKEI--------------------FAAARSFI 98

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +K   L  +      I+ +  +     + ++YE L+ +  +E   GA  + TPR ++   
Sbjct: 99  DKPATLTALITAIDAIDWY--SAKTEGLGDLYEGLLEKNANEKKSGAGQYFTPRVLIDSI 156

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------KIPPILV 241
            +L+           P +  T+ DP  GTGGFL  A +++                  L 
Sbjct: 157 VSLM----------KPKLGETIQDPAAGTGGFLIAANHYIRKHNDLEALSEAAYKKYRLQ 206

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HG E+    H + +  +++  L+SD     +  I+ G +LS +     +    ++NPPF
Sbjct: 207 FHGMEIVQAAHRLGLMNLMLHDLDSDE----TGGIRYGDSLSSEGQQLPKADLIITNPPF 262

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G K            K G L          S+  + FL H+   L+     GGRAA+VL 
Sbjct: 263 GTK------------KGGGLPTRDDFTFPTSNKQLAFLQHIYRALKP----GGRAAVVLP 306

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            + LF    G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+  +G 
Sbjct: 307 DNVLFESNVGA---DIRRDLMDKCYLHTILRLPTGIFYAQGVKTNVLFFTRGKTD--KGN 361

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
              +   DL  ++   G KR  +  +   +    + S  +G   R+       +R     
Sbjct: 362 TTGLWVYDLRANMPQFG-KRTPLTREHFAEFEAAFGSAPDGSAERVDTGEEGRFRYFSRK 420

Query: 482 RPLRMSFILD 491
                +  LD
Sbjct: 421 EIADRNDSLD 430


>gi|117921401|ref|YP_870593.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117613733|gb|ABK49187.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 530

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 106/554 (19%), Positives = 192/554 (34%), Gaps = 77/554 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAFGGS 65
           +   +   +W   + L       ++   +    LL  ++   E T + + +K+ L  G  
Sbjct: 2   TQNDIVQKLWNLCDILRD--DGINYSDYVTELVLLLFIKMVHENTEAELLDKHTLPEGYR 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             DL +   +   + Y     +LST        N          +   +      +    
Sbjct: 60  WTDLHTKSGINLLNDYKALLLALSTGKRVMLDPNDPEKTIEVQVHNDPLISAIY-ADAQT 118

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL +   L +I K    I+    +     + ++YE L+ +  SE   GA  + TPR +++
Sbjct: 119 RLREPRHLEQITKTLDQIDWF--SAKRDGLGDLYEGLLEKNASETKSGAGQYFTPRVLIN 176

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPP 238
                +           P     + DP  GT GFL  A  ++                  
Sbjct: 177 SMVRCI----------KPQAGEYIQDPAAGTAGFLIAAHEYIKAQPEYDDLSLKQIDFQR 226

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL P T  + +   L+  +E D    +      G+       + K     L+N
Sbjct: 227 YHAYVGVELVPNTRRLALMNCLLHGMEGDDDGVVHLGNALGNVGQ----SLKPADVILAN 282

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG     +      +                S+  + FL H+   L+     GGRAA+
Sbjct: 283 PPFGTSKGGEASITRDDLTFD-----------TSNKQLAFLQHIYRNLKP----GGRAAV 327

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +    +++
Sbjct: 328 VLPDNVLFEAGKG---TDIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSAKDK 384

Query: 419 RGKVQL---INATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKFS--- 465
             + Q    +   DL T++ + G KR   +D+       +Y         R  G++S   
Sbjct: 385 HQQEQCTENVWVYDLRTNMPSFG-KRTPFSDNHLAPFEQVYGEHAGGLSPRTEGEYSFGA 443

Query: 466 -----------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                      + +D R    R     R     +I D  G +    DI+W K      + 
Sbjct: 444 EQVEIADTDENQGVDNRLVHSRWRCFSR----DWIRDHKGDS---LDISWLKDKDSVDAA 496

Query: 515 WLDILKPMMQQIYP 528
            L     + ++   
Sbjct: 497 SLPEPDVLAREAKA 510


>gi|254430934|ref|ZP_05044637.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001]
 gi|197625387|gb|EDY37946.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001]
          Length = 487

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 164/462 (35%), Gaps = 73/462 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     + + +        L+         +    E  +   
Sbjct: 5   TTGDIVAKLWNLCNVLKDDGVT--YHQYVSELTYLLFLKM-------AKETGTEAGIPEE 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +LE               Y L  L   ++ +   + +               F++ 
Sbjct: 56  WRWDELE-----TRQGLKQLEHYKLLLLELGSSSSGSSALVQEI------------FANA 98

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + + K   L K+ +    ++ +  +     + ++YE L+++   E   GA  + TPR +
Sbjct: 99  SSFIRKPVTLNKLVEEIDKLDWY--SARQEGLGDLYEGLLQKNAEEKKSGAGQYFTPRPL 156

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKI 236
           +    A++           P +   + DP  GTGGFL  A   + +            + 
Sbjct: 157 IDAMVAVM----------QPQLGDVIQDPAAGTGGFLIAAQRWIREHQDISELDEAQQQR 206

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G E   +TH + +  +++  L+S         I+ G T+S D     +    L
Sbjct: 207 FYQRTFYGMEHVQDTHRLALMNLMLHGLDS---VSGEGGIRYGDTMSSDGEGLPKASLIL 263

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG K            K G L          S+    FL H+   L      GGRA
Sbjct: 264 TNPPFGTK------------KGGGLPGRNDFTFPTSNKQFCFLQHIYRAL----VPGGRA 307

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF G  G    +IR  L++   +  I+ LPT +F+   + T +   S   + 
Sbjct: 308 AVVLPDNVLFEGNVG---KQIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFSRGTSA 364

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             +G  + +   DL  ++   G KR  +  +      + Y S
Sbjct: 365 --KGNTKAVWVYDLRANMPAFG-KRTPLTREHFAVFEEAYGS 403


>gi|32476949|ref|NP_869943.1| type I restriction-modification system DNA methylase
           [Rhodopirellula baltica SH 1]
 gi|32447497|emb|CAD79086.1| type I restriction-modification system DNA methylase
           [Rhodopirellula baltica SH 1]
          Length = 720

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/573 (17%), Positives = 215/573 (37%), Gaps = 63/573 (10%)

Query: 10  SLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L   +W  A++L  + K   +D+   +L    LR  E   +     + E   A      
Sbjct: 19  KLEADLWSAADNLRANSKLTSSDYFMPVLGIIFLRHAENRFDVATRQIEEDKAAGRMPKR 78

Query: 68  D--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               + +V+       + + +      +T+    L + +    D  +AI E FD    + 
Sbjct: 79  KVIDQDYVRRRALPLPDEARFDWIMQMATSGDKPLPALVT---DAMRAIEEKFDPLKGVL 135

Query: 126 RLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +      ++ ++   +            V   IYE+ + RF  + +    +F TP  +
Sbjct: 136 PKDYGIFEPQVLEDLMRLFNSEQIRQATGDVFGRIYEYFLARFSIQKAHDNGEFFTPSSL 195

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +    +++PD             ++DP CG+GG    + + +   G         V +
Sbjct: 196 VQMLVN-VIEPDHG----------KVFDPACGSGGMFVQSSHFIEHEGGD--TAKRAVFY 242

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P+T  +    + +  L  +    ++    Q + +           + ++NPPF  
Sbjct: 243 GQEKNPDTIRIAKMNLAVHGLTGEIGEAITYYEDQHNLVG-------GADFVMANPPFNV 295

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRAA 357
                 D V+ E    +  R   GLP      K+++G+ L++ +  + L    N  GRA 
Sbjct: 296 ------DLVDAERIKTDTDRLPFGLPGVNKQKKVANGNYLWISYFWSYL----NEKGRAG 345

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            V+SS       AG GE ++R  ++    ++ ++++ ++ F+  ++   LW     K + 
Sbjct: 346 FVMSSQA---SSAGHGEKDVRERIVRTGDVDVMMSIRSNFFYTRSVPCELWFFDRGKPKA 402

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +R  V +++A  ++  +       R IND    Q+ ++         S +  YR    R 
Sbjct: 403 QRDHVLMVDARSVYRKV------NRTINDFAPEQMANL--------SSIVWLYRGQKKRF 448

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           + +++    S  ++  G      ++    L  ++      + +    ++      E  + 
Sbjct: 449 VALVQRYLHSINIETQGCEPPLQELE-STLDSVNDKTSAFVKELQRCKLVADAEKEPILA 507

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
              +  EA T   K  +S     +     K+ +
Sbjct: 508 AVTELQEADTAYRKDRQSLWKDLVAYRKGKNEK 540


>gi|84390142|ref|ZP_00991404.1| type I restriction-modification system, M subunit [Vibrio
           splendidus 12B01]
 gi|84376796|gb|EAP93671.1| type I restriction-modification system, M subunit [Vibrio
           splendidus 12B01]
          Length = 524

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 102/571 (17%), Positives = 197/571 (34%), Gaps = 81/571 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +WK  + L        +   +    LL  ++   E   + + +  L  G   
Sbjct: 2   NNNEIVQKLWKLCDVLRD--DGITYTDYVTELVLLLFIKMETEQAEAGITKHVLPEGCRW 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D+ +   +  Y  Y         L      + L + I               ++     
Sbjct: 60  QDITTQTGIKQYDHY-----RQMLLDLGKHHDPLLAAI---------------YAGAQTS 99

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L ++      ++    +  +  + ++YE L+ +  +E   GA  + TPR ++  
Sbjct: 100 LKEPKHLSQLVTRIDELDWF--SAREDGLGDLYEGLLEKNANETKSGAGQYFTPRPLIDA 157

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHKIPP 238
              L+          +P    T+ DP  GT GFL  A   + D                 
Sbjct: 158 IVKLM----------NPQAGETIQDPAAGTAGFLIAAHEFIKDKTDDLYDLGEKEQGFQK 207

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +G EL P T  + +   L+  +E +    +     QG+TLS +     + +  LSN
Sbjct: 208 SKAYNGMELVPSTRRLALMNCLLHGIEGEGEGAI----HQGNTLSGEGAQLPKVNLILSN 263

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG              K G          + S+  + FL H+   L+     GGRAA+
Sbjct: 264 PPFGTS------------KGGGGPTRDDLTYETSNKQLAFLQHIYRHLKP----GGRAAV 307

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF    G    ++R  L+    +  I+ LPT +F+   + T +        E +
Sbjct: 308 VLPDNVLFEAGVG---QKVRADLMNKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTPENK 364

Query: 419 RGK---VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM-------- 467
             +          D+ T++ N   KRR + +      ++ Y S  NG+  R+        
Sbjct: 365 DQEENCTTSTWVYDMRTNM-NTFGKRRPLTERHFAPFIEAYGSDANGQSPRIEGVWQQLG 423

Query: 468 -LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            ++            +  +  +I ++ G +    DI+W K      +  L   + +  + 
Sbjct: 424 EVESDAENTSENARWKKFKREYIREQKGDS---LDISWLKDLEATSAENLPEPEVLAGEA 480

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                        +  +   T + +  K  +
Sbjct: 481 MAELTEAMSEIYQLMQSLGATDEAEQQKQLL 511


>gi|300114420|ref|YP_003760995.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299540357|gb|ADJ28674.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 499

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 177/474 (37%), Gaps = 69/474 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           + AS+ + +W     L  D     +G  +        L+  +   +P             
Sbjct: 2   NTASIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMADEYSQP------------- 46

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                         +      EY+  +L +         YIA          +     F+
Sbjct: 47  -----------PYRHEVGIPPEYNWQSLKTKRGAELEGHYIALLRALGTRPGMLGQI-FT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++    LY++ K   G++     +   +  +IYE L+ +   +   GA  + TPR
Sbjct: 95  KAQNKIQDPAKLYRLIKMVDGVQW--VMIGADIKGDIYEGLLEKNAEDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHK 235
            ++      +           P   +T+ DP CGTGGF   A + ++D        +   
Sbjct: 153 ALIKAMVECV----------RPEPGKTIADPACGTGGFFLAAYDFLSDPKHYSLDKAQKA 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                  HG E+   T  +C+  M +  + E D    +S N            +G+ + Y
Sbjct: 203 FLKHQTFHGNEIVANTRRLCLMNMFLHNIGEIDGESAISPNDAL------VAPSGQSYDY 256

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGG 353
            L+NPPFGKK        E E ++ +L           S+  + F+ H+   L+      
Sbjct: 257 VLANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWATTSNKQLNFVQHIRALLK----ST 312

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+V+  + LF G AG     IRR LLEN  +  I+ LPT +F+   +   +    NR
Sbjct: 313 GKAAVVVPDNVLFEGGAGE---TIRRKLLENTDLHTILRLPTGIFYAKGVKANVLFFDNR 369

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFS 465
           +   R    + +   D  T++ +  KK + +  +   + +  Y   +R   + S
Sbjct: 370 EASPRPW-TKEVWYYDYRTNVHHTLKK-KPMRYEDLAEFIACYHPTNRHERRES 421


>gi|224023954|ref|ZP_03642320.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM
           18228]
 gi|224017176|gb|EEF75188.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM
           18228]
          Length = 640

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/583 (17%), Positives = 210/583 (36%), Gaps = 51/583 (8%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L   +W++A+ L          +   +L    LR      +   + + +   + GG
Sbjct: 3   NIRKLEAELWESADLLRQGSKLTSNQYCMPVLALLFLRYAYSRYKLVEAEILKDRPSRGG 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL----------GSTNTRNNLESYIASFSDNAKAI 114
             + +E     A  + Y   E     L          G  N      + +    +NA  +
Sbjct: 63  RVMPVEPSDFEAKSALYLPREAQFDFLVNLPDNITSAGLRNKDGQPVNSLGEAVNNAMQL 122

Query: 115 FED--FDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            E+     +  + +   +    LL ++ + F+   +  D +   ++  IYE+ + +F   
Sbjct: 123 VEEQSEQLTGVLPKTYTIFADDLLRELLRIFNNKTI--DEIGGDIIGRIYEYFLSKFAKA 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           V+     F TP+ +V +   +L                 ++DP CG+GG      + V  
Sbjct: 181 VASDDGVFFTPKSLVKMLVNVLEPEQG-----------VMFDPACGSGGMFVQTGDFVNA 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      +   GQE       +C+  M +  L          N       +      
Sbjct: 230 AGMNANTQ--MTFFGQEKVEYNAQLCLMNMAVHGLNGRIVSGDEANSFYHDAFN----LA 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  Y ++NPPF     K + A         L        ++ + + L++ +    L   
Sbjct: 284 GKCDYVIANPPFNVDKVKSESAFNAGRLPFGLPGVNAKTKEVGNANYLWINYFYAYL--- 340

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  GRA  V++SS      + + + +IR  L++   ++ +V++  + F+  ++   LW 
Sbjct: 341 -NERGRAGFVMASSA---TDSSNKDRDIREQLVKTGHVDVMVSVGNNFFYTLSLPCSLWF 396

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
               K EE R KV  I+A   +T +     +         + I+ +Y   E  K+  +L+
Sbjct: 397 FDKAKREENRDKVLFIDARKYYTVVDRTLNEWTEWQLLNLQAIVHLYRG-ETDKYQALLE 455

Query: 470 -YRTFGYRRIKVLRPLRMSF--ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            Y       +  +    +SF  +LD     +  + +TW   SP +   + ++ + +  QI
Sbjct: 456 KYNQTISEAVNSISEESLSFFPLLDSETAGQFNSSLTWLN-SPWNN--YDELSRNLNGQI 512

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
                     +E +K  E K +++ A   F           + 
Sbjct: 513 EQTKSCVRLAEERLKKRELKPMRL-AGDKFCKVLEEILTIIEE 554


>gi|255693566|ref|ZP_05417241.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260620632|gb|EEX43503.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 494

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 97/508 (19%), Positives = 182/508 (35%), Gaps = 63/508 (12%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K  + L G      +   +L    L+      +   S   ++   F    +   S     
Sbjct: 15  KAKQILGGTLSVNQYKDYVLALLFLKSASEYYKSNDSFQSDENKPFLRLLVSERSSFDYL 74

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
                +     L  +            I  +  N    FE      T  RL K   L   
Sbjct: 75  YKELGSLELGKLINVALYELEQANSRVIEGYEINRAINFESNILGDTDERLSKLRELLHF 134

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              F  + L  D      +  +Y  L+  F  E  +   + +TP++V+ L   L+ D  D
Sbjct: 135 ---FQKLTLTDDAGKLIDIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIGDNKD 191

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                      +L DP  G+G  L +    V   G++          GQE     +A+  
Sbjct: 192 ---------NNSLCDPVSGSGTLLVEVGKRVGIRGAN--------IFGQEANWNQYALTK 234

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAV 312
             +++   +             G +LS    T     KRF    S PPF  KW  +    
Sbjct: 235 MNLMLNGFKDSTFF-------WGDSLSNPKLTDDGGLKRFDIVASIPPFADKWATE---- 283

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             E +    GRF  G+P  S  +  ++ H+   L+      GRA +V+ +  LF      
Sbjct: 284 --EAEFDRYGRFQYGIPPRSQATWAYISHILASLKP----NGRAVVVVPAGVLFRTS--- 334

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            ES+IR  ++E++L+EA++ LP +LF+   I+T + +    +   +  +   ++A   + 
Sbjct: 335 -ESKIRHQIIEHNLLEAVIELPQNLFYGAAISTAILVFRKDR---KTTQTLFMDARKGYI 390

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFGYRRIKVLRPL 484
           S +   K    ++D    Q+L+ Y    +G+         + +         +       
Sbjct: 391 SNKGIYK----LSDTMVEQLLNTYKGFLSGEQVWQENSCPAYIATQEEVRNNKYDW---Q 443

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQ 512
            + ++ +K     ++ + T +++  L +
Sbjct: 444 TVKYVEEKIERVEVDVEATLQRIEKLEK 471


>gi|282918215|ref|ZP_06325956.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317912|gb|EFB48280.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 318

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 47/352 (13%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L              
Sbjct: 1   GEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVGKEAK------ 46

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
               +    GQE    T+ +    ML+  +  +     + +I+   TL    F G  F  
Sbjct: 47  ----VYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGHTFDA 97

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L    +  G
Sbjct: 98  VIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEG 148

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   K+S     + 
Sbjct: 204 KCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQE 259

Query: 473 FGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
                  + + R +          L +++ D+    ++++ + Q     + +
Sbjct: 260 IADNDYNLNIPRYVDAFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 311


>gi|15669405|ref|NP_248215.1| type I restriction-modification enzyme 1 subunit M
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2496162|sp|Q58617|Y1220_METJA RecName: Full=Uncharacterized adenine-specific methylase MJ1220
 gi|1592326|gb|AAB99225.1| type I restriction-modification enzyme 1, M subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 578

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 183/528 (34%), Gaps = 48/528 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L   + + A+ +       D+  V+L F   + +          +++++      +
Sbjct: 83  SKDKLIGLLKQGADLIRTQV---DYK-VLLLFLFFKAISDKYLLKVEELKKEFEDLDEED 138

Query: 67  ------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                  ++     V G   Y   E + +     N  N +             + +    
Sbjct: 139 IYVLANEEILELYDVEGKKLYVWHEVANNPEDFINALNKIVEMNKEKLSGLDELIKRTGL 198

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             T+   E   ++  +   FS  +         ++ + YE  +  F    ++   +  TP
Sbjct: 199 P-TLFENENRHIVQHLINLFSRADFS--EASYDILGDAYEWTLNYFAPTKAKE-GEVYTP 254

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  L   L+   DD            + DP CG+G  L        +        P +
Sbjct: 255 IEVSKLIAHLVEPKDD----------EVILDPACGSGSMLI-------EQYRFAGSNPNI 297

Query: 241 VPHGQELEPETHAVCVAGMLIRRL---ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
           V  GQE    T  +     ++  +   ++      S    +  +   ++    +    ++
Sbjct: 298 VLVGQERNDVTAVLAKLNFILHGINLKDAKVFIGDSLLNPKFESFIXEVKGTGKADKVVA 357

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+ +    +      E           G P  +     ++  +            +A 
Sbjct: 358 NPPWNQDGYDENTLKVNEKYKDIY---MYGFPNKNSADWAWVQLINYY------TEKKAG 408

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVL S  LF    G  E  IR+  +++DLIEA+V LP  LF+       + IL+  K EE
Sbjct: 409 IVLDSGALFR---GGKEKTIRKRFVDDDLIEAVVLLPEKLFYNCPAPGIILILNKNKPEE 465

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476
           R+GK+  INA++ +     E KK   ++D+   +I   Y   ++   F +++D       
Sbjct: 466 RKGKILFINASNEYIK-HPEVKKLNKLSDENIEKIAKAYKEFKDVDGFCKVVDIEEIRKN 524

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              +   L +S I +   +   E      KL   +   +  +   + +
Sbjct: 525 DYNLNVSLYISPIEEDEDVDLGEVYEELNKLHNEYLEKFEVVKGYLEE 572


>gi|226329604|ref|ZP_03805122.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198]
 gi|225202790|gb|EEG85144.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198]
          Length = 396

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 150/408 (36%), Gaps = 48/408 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L               E      
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTAEDIKNLN 61

Query: 64  GSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             + D   +V+      +A  + ++T          +N R+ L ++    S   K +FE 
Sbjct: 62  EEDTDTVQYVQSNLGYFIAYDNLFSTWVDPKFEFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 FDFSSTIARLEK--------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             F++    L K           +  +      I ++ +   D V+  IYE+LI +F + 
Sbjct: 122 I-FTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNANQGYD-VLGYIYEYLIEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                 +YDPT G+G  L +    V  
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNIVAHALKDKDNIE------IYDPTSGSGSLLINIGEAVQ- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + K    +  + QEL+  T+ +    +++R +++   +  + +  +      D    
Sbjct: 233 --KYAKNKDSVTYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPYFDENDP 290

Query: 290 KR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +           +SNPP+ + WE    + +         RF  GL   +     FL+H  
Sbjct: 291 QGSYETLYVDAVVSNPPYSQNWEPTDKSND-----PRYSRF--GLAPKTKADFAFLLHDL 343

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
             L+      G   IV     LF    G  E +IR+ + +   + AI+
Sbjct: 344 YHLK----PNGIMTIVSPHGVLFR---GGEEGKIRKLMTKLSQLSAII 384


>gi|282907755|ref|ZP_06315596.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328366|gb|EFB58638.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 270

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 43/311 (13%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L              
Sbjct: 1   GEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG---------- 42

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +  +     + +I+   TL    F G  F  
Sbjct: 43  KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDA 97

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L    +  G
Sbjct: 98  VIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEG 148

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  ++   K+S     + 
Sbjct: 204 KCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKKTIDKYSYSATLQE 259

Query: 473 FGYRRIKVLRP 483
                  +  P
Sbjct: 260 IADNDYNLNIP 270


>gi|15839313|ref|NP_300001.1| type I restriction-modification system [Xylella fastidiosa 9a5c]
 gi|9187844|gb|AAF85760.1|AE004078_12 type I restriction-modification system [Xylella fastidiosa 9a5c]
          Length = 382

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 180/370 (48%), Gaps = 37/370 (10%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A++ L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 18  MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEGTKDAVL 77

Query: 57  E--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDN 110
           E  K+L          +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 78  ERKKFLDVHQVAEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSLD 137

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++   +P              +  M 
Sbjct: 138 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 197

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 198 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTY---SLYDGSCGT 254

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++   ++    +    
Sbjct: 255 GGMLTVAEEALHALAQQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGAD 314

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPG------L 328
           +  STLS D F  + F + +SNPP+GK W+ D + +  +KE  +        G      L
Sbjct: 315 K--STLSADQFPSRAFDFMISNPPYGKSWKTDLERMGGKKEFSDPRFIVSHAGNAEFKLL 372

Query: 329 PKISDGSMLF 338
            + SDG +LF
Sbjct: 373 TRSSDGQLLF 382


>gi|320013189|gb|ADW08037.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 461

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 182/450 (40%), Gaps = 74/450 (16%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K  + L G     D  +++L    LR +               +  GG++ D   + ++A
Sbjct: 12  KALDKLRGPLDIQDAQQLLLAVIFLRCVSD-------------IPAGGASGDRPQWRQLA 58

Query: 77  --GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
             G S     E +         +  L+++ +S+ D  + + E          L    LL 
Sbjct: 59  ELGSSLAGDHELTW------ALKQALDAWTSSYLDGGRPMSESI-----PDHLVAGPLLR 107

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++       +          +  +YE  + RF +  ++   ++ TPR +V L   +L   
Sbjct: 108 EVLGLVDRAD---------RLVELYEECLERFSN--NKKGGNYFTPRHLVRLLVEML--- 153

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                  +P     ++DP CG+GGFL ++  +V + G        +   G+++ P    V
Sbjct: 154 -------APRQGEQVFDPACGSGGFLVESARYVQEHGG---SSAAVGLVGRDINPRARQV 203

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               +  R LE+D         +  ++L  D      F     NPPF  K  +D    + 
Sbjct: 204 AWMNLTARGLEAD------LGSRPVNSLWADDTPAGAFDVVFVNPPFNLKLARDDLRYD- 256

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                   R+  G P  S+ +  ++ H+ +KL       GRAA++L     F   A +G 
Sbjct: 257 -------SRWRYGEPPRSNANFAWIQHVVSKLTTR----GRAAMLLPDGATFTSGAAAG- 304

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             IRR L+ +DL+ A+VALP  LF  T+I+   WI S  K  ERRG+V  ++A      +
Sbjct: 305 --IRRGLVADDLVSAVVALPAGLFPHTSISASAWIFSREKPAERRGQVLFVDARKQGNLV 362

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKF 464
              G+ RR +++     I D Y S     +
Sbjct: 363 ---GRGRRTLSEGAIESIADTYRSWYAESY 389


>gi|319788901|ref|YP_004090216.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
 gi|315450768|gb|ADU24330.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
          Length = 476

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 100/527 (18%), Positives = 182/527 (34%), Gaps = 93/527 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        + + +        L+   C    T  A+ E+Y    
Sbjct: 2   NNQEIVAKLWNLCNVLRD--DGITYQQYVTELTYILFLKM--CKETDTEKAIPEEYRWDK 57

Query: 64  ---GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                 I+L+ F K                             +    +N +    +   
Sbjct: 58  LLSKQGIELKKFYK---------------------------ELLEHLGENCQGRVREIYQ 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            +    +++   L KI       + +  +  +  + N+YE L+ +  +E   GA  + TP
Sbjct: 91  GAQTN-IDEPKNLEKIITTIDQFDWY--SAKEEGLGNLYEGLLEKNATEKKSGAGQYFTP 147

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------- 232
           R ++++ T L+          +P       DP CGT GF+  A ++V +           
Sbjct: 148 RVLINVMTRLI----------APKAGERCNDPACGTFGFMIAADHYVKEQTDDLFDLSVD 197

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +        G EL  +TH + +   ++  +              G TLS      K F
Sbjct: 198 EQEFQRTQAFSGCELVHDTHRLALMNAMLHDISGPIYL--------GDTLSNYGKQMKGF 249

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG K            K GE           S+  + FL H+   L    +G
Sbjct: 250 DVVLTNPPFGTK------------KGGERATRDDLTFPTSNKQLNFLQHIYRSL--NQSG 295

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             RAA+VL  + LF    G    +IRR L++   +  I+ LPT +F+   + T +   + 
Sbjct: 296 HARAAVVLPDNVLFADGDGE---KIRRDLMKKCNLHTILRLPTGIFYAQGVKTNVLFFTR 352

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
              +  +G  + +   DL + + + G K   + +    + ++ Y + +            
Sbjct: 353 GTAD--KGNTKEVWIYDLRSEMPSFG-KTNPLKESHFDEFVECYHAEDISARQETWSEEN 409

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              R  +      +    DKT L     DI+W K +     + L  L
Sbjct: 410 PNGRWRRYSYEDILE--RDKTSL-----DISWIKSANTSDDYTLTEL 449


>gi|331000343|ref|ZP_08324024.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
 gi|329572139|gb|EGG53804.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
          Length = 701

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 174/459 (37%), Gaps = 39/459 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+  IYE+LI +F S   + A +F TP +V  L   ++        +       ++YDP
Sbjct: 6   DVLGFIYEYLIGQFASSAGKKAGEFYTPHEVSELMAEIVAYSLKDRERI------SVYDP 59

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L      +   G   K    +    QE+   T+ +    +++R +  D     
Sbjct: 60  TSGSGSLLITIGKAIEKQG---KSTDSIRYFAQEIIEATYNLIRMNLVMRGIIRDNISTS 116

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + +  +       L          +SNPP+  KW  D  A +   +N        GL   
Sbjct: 117 NNDTLRNDWPRNTLKDEPLLVDAVVSNPPYSLKWNPDGMAADPRFQN-------YGLAPK 169

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF    G  E  IR  LL+ + I+A++
Sbjct: 170 SAADFAFLLHDLYHLKY----DGILTIVLPHGVLFR---GGEEERIRTQLLKLNQIDAVI 222

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T I T + +L   + ++    V  I+A+  +  +  + K    +     R+
Sbjct: 223 GLPPNIFFGTGIPTIIMVLRKSREQK---DVLFIDASKGFEKVTAKNK----LRARDIRK 275

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            ++++  R+    FSR + +         + + R +  S        + + + I  +++ 
Sbjct: 276 AVEVWKDRKELEGFSRRVSFEEIENNGFNLNIPRYIASSEEERSDLYSLIYSGIPKKEID 335

Query: 509 PLH--QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
            L    + +  + + +  Q     +      + I  N    ++ K         +    +
Sbjct: 336 TLQPFWNVFEGLKEKLFNQREDGYFVLKENAKEILENFPAIIEFKKKVHESFKALFPLLK 395

Query: 567 KDPRADPVTDVNG---EWIPDTNLTEYENVPYLESIQDY 602
           +   A+          E I    L + E +P ++  + +
Sbjct: 396 QKLIAERQVISQSLAFESIASEILEQAEKLPLIDKYEAF 434


>gi|189347939|ref|YP_001944468.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
 gi|189342086|gb|ACD91489.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
          Length = 772

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 161/475 (33%), Gaps = 95/475 (20%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           +E   + A+L   +W  A+ L  +   K  ++   +L    L   +      R+ +    
Sbjct: 7   SEKDTATAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAK 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNTR---NNLESYIASFSDNAK 112
            +    +   +     A    Y + E      L+   + N     N     I   +    
Sbjct: 67  SSTRRGSRVDDPAAYHAEGVLYLSPEARFGYLLNRPEAENIGVMVNEAMRDIEKHNQQLA 126

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +     +      L  + LL ++ K  S I   P ++       IYE+ +  F     +
Sbjct: 127 GVLPKTYY------LFDSPLLKQLLKKVSEI---PASMDYDAFGRIYEYFLGEFAMSEGQ 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP  +V L T ++           P     + DP CG+GG    +   VA   +
Sbjct: 178 GGGEFYTPVSIVRLLTEVI----------EPYHG-RILDPACGSGGMFVSSARFVAQQKA 226

Query: 233 HHKI----------------------------------------------PPILVPHGQE 246
             ++                                                 L  HG E
Sbjct: 227 KTRLTPPSSPALLPEVEGGEEYAPSSTRSLPKVEGGLSVGHDVTQYSGDPNRELSIHGIE 286

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
              ET  +C   + +  LE       + N                F + L+NPPF     
Sbjct: 287 KTDETGRLCRLNLAVHGLEGRIMHGGNVNSYYDD----PHEATGNFDFVLANPPFNV--- 339

Query: 307 KDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
              +AV+KE     +G   RF  GLP+  + + L++    + L    N  GRA  V+++S
Sbjct: 340 ---NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL----NERGRAGFVMANS 392

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
                 A S E EIRR L+E   ++ +VA+  ++F+   +   LW     K + R
Sbjct: 393 A---SDARSSEQEIRRQLVEIRAVDVMVAVGPNMFYTVTLPCTLWFFDKAKAKAR 444


>gi|282919573|ref|ZP_06327308.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317383|gb|EFB47757.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 318

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 148/352 (42%), Gaps = 47/352 (13%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ V  +   ++ D  D L        R +YDPTCG+G  L              
Sbjct: 1   GEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCGSGSLLLRVG---------- 42

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +  +     + +I+   TL    F G  F  
Sbjct: 43  KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGNTFDA 97

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L    +  G
Sbjct: 98  VIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEG 148

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  ++   K+S     + 
Sbjct: 204 KCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKKTIDKYSYSATLQE 259

Query: 473 FGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
                  + + R +          L +++ D+    ++++ + Q     + +
Sbjct: 260 IADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 311


>gi|186684991|ref|YP_001868187.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467443|gb|ACC83244.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 489

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 97/465 (20%), Positives = 165/465 (35%), Gaps = 74/465 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            +   +WK  + L  D     + + +   T L  L+ A E       EK L  G    +L
Sbjct: 6   DIVQKLWKLCDVLRDDGVT--YLQYVTELTYLLFLKMAQETGA----EKQLPEGYRWGNL 59

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
            +  +    +FY +    L +  S+     +                   F +    L+ 
Sbjct: 60  VNKGETEQLTFYRSLLLMLGSEKSSQRVQAI-------------------FVNAQTSLKI 100

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +L K+  +   ++   +        ++YE L+++   E   GA  + TPR ++    A
Sbjct: 101 PRILKKLVTSIDELDWFSEH--RDEFGDLYEGLLQKNADEKKSGAGQYFTPRPLIDCMVA 158

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPILVP 242
           L+           P     + DP  GTGGFL     ++                      
Sbjct: 159 LI----------KPQPGELIQDPAAGTGGFLIAGDRYIRQYHDPFEWTEAQQSFQQYQAF 208

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G EL  + H + +  M++  +E             G TLS       +    L+NPPFG
Sbjct: 209 YGMELVQDAHRLMLMNMMLHGIEGAVDL--------GDTLSSQGQRLAKADVILTNPPFG 260

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K            K G L          S+  + FL H+   L+      GRAA+VL  
Sbjct: 261 TK------------KGGGLPSRDDFTYSTSNKQLAFLQHIYRSLKPE----GRAAVVLPD 304

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           + LF    G     IR  L+    +  I+ LPT +F+   + T +       TE  +G  
Sbjct: 305 NVLFEDGQG---KSIRADLMNKCNLHTILRLPTGIFYAQGVKTNVLFFQRGTTE--KGNT 359

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           + +   D+ T++ + G KR  +  +   +    Y    NG   R+
Sbjct: 360 KAVWFYDMRTNMPSFG-KRFPLTREHFAEFEQCYGDDPNGNHPRV 403


>gi|301170025|emb|CBW29629.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 314

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 68/318 (21%), Positives = 124/318 (38%), Gaps = 38/318 (11%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       +    +H      +  +GQE  P T  +    M IR ++ D
Sbjct: 8   RVYDPAMGSGGFFVQTERFIT---AHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYD 64

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
                        + ++     K+  + ++NPPF    W  +  A        +  R+  
Sbjct: 65  ------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLA--------DDPRWAY 110

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P   + +  +L H+   L    +  G+ A++L++  +      + E EIR+ ++  DL
Sbjct: 111 GTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--SSQTNNEGEIRKAIINADL 164

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      + +  R    
Sbjct: 165 VECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM---KDRVLRDFTA 219

Query: 447 DQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           D   +I D   + +          F +             VL P R     ++       
Sbjct: 220 DDIAKIADTLHAWQTSDGYEDQAAFCKSATLEEIKNNDF-VLTPGRYVGTAEQEDDGVPF 278

Query: 500 ADITWRKLSPLHQSFWLD 517
           A+   + L+ L +  +  
Sbjct: 279 AEK-MQNLTALLKEQFAK 295


>gi|324115279|gb|EGC09243.1| N-6 DNA methylase [Escherichia fergusonii B253]
          Length = 529

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 112/585 (19%), Positives = 208/585 (35%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPVG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADNQKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSNMDSLDWYNGAYGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    +Y         R  G+
Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E   S+EA   +    ++F
Sbjct: 480 PEPDVLAAEAMGELVQALGELDALMRELGASDEADAQRQLLEEAF 524


>gi|291543145|emb|CBL16255.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus bromii L2-63]
          Length = 562

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/605 (18%), Positives = 207/605 (34%), Gaps = 92/605 (15%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAV 55
           M +      SL   N ++     L        F     ++L    LR +    E    A+
Sbjct: 1   MAKKKTDEKSLNIDNILFNCRNYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGVKAL 60

Query: 56  REKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESY 103
           R+  +  G    D             A  ++    E   ST+ +T         +     
Sbjct: 61  RQTLIEKGLDPDDENIKAAFFDDATFADGTYNLPIESRWSTIINTPAPKLNVALDTALIR 120

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +       K  F +  F++          +       S  E   D     ++  +YE+ +
Sbjct: 121 LEEEDPQLKGCFINGTFTTRNLAPNDIKKIVDEVNKISHKEFGKDR---DLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L   ++   +            TLYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVQLIATMIEPYNG-----------TLYDPCCGSGGMFVQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V    S       +  +GQE EP T+ +    + +R +        +   +  S+ +
Sbjct: 227 AALVK---SKQGNLNSINVYGQEKEPATYRLAKMNLALRGISH------NLGSEADSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL  G RF+Y ++NPPF  K   + +                  P  S+ +  +++H+ 
Sbjct: 278 HDLHEGLRFNYIMANPPFNLKGWYNDNLKNDPRWAD------YATPPESNANYAWILHIL 331

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+      G A  +L++  L      S   +IR+ L+END +EAIV LP +LF  T+I
Sbjct: 332 SHLKA----DGVAGFLLANGAL----NDSDTLDIRQKLIENDRVEAIVVLPRELFITTDI 383

Query: 404 ATYLWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQ----- 448
           +  LWIL+  K            R  ++  ++      + +++E KK+  ++        
Sbjct: 384 SVTLWILNRNKKGGNYHGRNLRNREHEILFMDLRQWKENPVKHENKKKVFLSSKDSKNTE 443

Query: 449 ---------RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
                      +  +IY + +                +  V    R   + D        
Sbjct: 444 NITINLAGQIEKAAEIYHTWQ---------NEGTVSEKYAVPELYRSVKVYDSQ-----L 489

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
            D   +   P  +S    +      +   +     + KE  +        +K  K     
Sbjct: 490 TDEERKNNVPTIESKGYTLTPSKYIEFIDHDLKIDYEKEMARIQAEMQEIMKQEKESQQM 549

Query: 560 FINAF 564
             +AF
Sbjct: 550 LEDAF 554


>gi|295401703|ref|ZP_06811670.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976323|gb|EFG51934.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 493

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 101/492 (20%), Positives = 180/492 (36%), Gaps = 79/492 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGS 65
           +   +   +W     L        + + +   T L  L+   E  +  +  EKY      
Sbjct: 2   NNREIVQKLWNLCNVLRD--DGITYHQYVTELTYLLFLKMMKETGQEYIIPEKYRWDSLV 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D                 Y    L      N L   I               ++   +
Sbjct: 60  EKD----------GIELKEHYQQLLLDLGKEENELLKQI---------------YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI ++ + ++ +        + ++YE L+ +  SEV  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIQSINNLDWY--NAKQEGLGDLYEGLLEKNASEVKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIP 237
           +   L+          +P      +DP  GT GF+  A  HV +    +        +  
Sbjct: 153 VIVELV----------NPQPGERCHDPAAGTFGFMIAADRHVREQTDDYFDLSQEEIEFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + +   L+  +  +           G TLS    + K +   L+
Sbjct: 203 KYKAFSGVELVRDTHRLAIMNALLHDIHGEILL--------GDTLSSLGESLKNYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K            K GE           S+  + FL H+   L+  PNG  RAA
Sbjct: 255 NPPFGTK------------KGGERATRTDFTFTTSNKQLNFLQHIYRALK--PNGKARAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+ 
Sbjct: 301 VVVPDNVLFEGGVGA---DIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKTD- 356

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
             G  + +   DL T++ + G KR  +  +     +  Y +       ++ D R   + R
Sbjct: 357 -VGNTKEVWVYDLRTNMPSFG-KRNPLTKEHFEGFIKAYKA---EDRRKVKDERWNVFTR 411

Query: 478 IKVLRPLRMSFI 489
            ++ +      I
Sbjct: 412 EEIAKKGDSLDI 423


>gi|138894434|ref|YP_001124887.1| Type I restriction enzyme StySPI M protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265947|gb|ABO66142.1| Type I restriction enzyme StySPI M protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 493

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/492 (20%), Positives = 180/492 (36%), Gaps = 79/492 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGS 65
           +   +   +W     L        + + +   T L  L+   E  +  +  EKY      
Sbjct: 2   NNREIVQKLWNLCNVLRD--DGITYHQYVTELTYLLFLKMMKETGQEYIIPEKYRWDSLV 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D                 Y    L      N L   I               ++   +
Sbjct: 60  EKD----------GIELKEHYQQLLLDLGKEENELLKQI---------------YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI ++ + ++ +        + ++YE L+ +  SEV  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIQSINNLDWY--NAKQEGLGDLYEGLLEKNASEVKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIP 237
           +   L+          +P      +DP  GT GF+  A  HV +    +        +  
Sbjct: 153 VIVELV----------NPQPGERCHDPAAGTFGFMIAADRHVREQTDDYFDLSQEEIEFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + V   L+  +  +           G TLS    + K +   L+
Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDIHGEILL--------GDTLSSLGESLKNYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K            K GE           S+  + FL H+   L+  PNG  RAA
Sbjct: 255 NPPFGTK------------KGGERATRTDFTFTTSNKQLNFLQHIYRALK--PNGKARAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +++  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+ 
Sbjct: 301 VIVPDNVLFEGGVGA---DIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKTD- 356

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
             G  + +   DL T++ + G KR  +  +     +  Y +       ++ D R   + R
Sbjct: 357 -VGNTKEVWVYDLRTNMPSFG-KRNPLTKEHFEGFIKAYTA---EDRRKVKDERWNVFTR 411

Query: 478 IKVLRPLRMSFI 489
            ++ +      I
Sbjct: 412 EEIAKNGDSLDI 423


>gi|323697974|ref|ZP_08109886.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio sp. ND132]
 gi|323457906|gb|EGB13771.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio desulfuricans ND132]
          Length = 478

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/535 (18%), Positives = 187/535 (34%), Gaps = 92/535 (17%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAF 62
            +   +   +WK  + LWGD     + + +        L+  E          +E  L  
Sbjct: 2   TTTQDIVQKLWKLCDILWGDGVT--YHQYVNELTYLLFLKMAE-------ETEKEDQLPE 52

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                 L     V   +FY      L T GS   ++                     +++
Sbjct: 53  AYHWKKLVEMDGVEQLTFYKKLLIDLGTQGSKLVQDI--------------------YAN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             + +++   L K+  +   ++ +  +  +  + ++YE L+ +  +E   GA  + TPR 
Sbjct: 93  ASSFIQQPKNLRKLVDSLDELDWY--SAREEGLGDLYEGLLEKNATESKRGAGQYFTPRR 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234
           ++ +   L+           P     + DP  GTGGFL +A  ++ +   +         
Sbjct: 151 LIEVMVELM----------QPQAGEVIQDPAAGTGGFLINADAYIRERTGNLYNLPESKQ 200

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G EL  + H +C+  +++  +E+            G TL     +  +   
Sbjct: 201 NFQRRQAFQGMELVQDVHRLCLMNLMLHGIETPIAL--------GDTLGPQGASMPKADV 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG                G   R        ++  + FL H+   L+     GG
Sbjct: 253 ILTNPPFGT------------ATGGGHTRREDFTFPTNNRQLAFLQHVYRGLKP----GG 296

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G    +IR  L++   +  I+ LPT +F+   + T +      +
Sbjct: 297 RAAVVLPDNVLFEDNTG---RKIRTDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFQRGE 353

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           T+  +G  + +   DL T++ + G KR  +           Y    NG   R+       
Sbjct: 354 TD--KGNTKAVWVYDLRTNMPSFG-KRTPLTRAHFSAFEQAYGDDPNGGSERVDQGEEGR 410

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
           +R           +  D         DITW +      +  L   + +  QI   
Sbjct: 411 FR----------CYSRDDIAKRADNLDITWLRDENADHAEDLPEPEELAGQIMEN 455


>gi|256810723|ref|YP_003128092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus fervens AG86]
 gi|256793923|gb|ACV24592.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus fervens AG86]
          Length = 577

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/537 (17%), Positives = 192/537 (35%), Gaps = 66/537 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L + + + A+ +       D+  V+L F   + +        + ++E++      +
Sbjct: 83  SKDKLISLLKQGADLIRTHV---DYK-VLLLFLFFKAISDKYLLKVAELKEEFEDLNEED 138

Query: 67  ------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                  ++     V G   Y             N  NN E +I + +   +   E    
Sbjct: 139 IYVLANEEILELYDVEGKKLYV----------WQNVANNPEDFITALNKIVEMNREKLSG 188

Query: 121 SSTIARL---------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
              + +          E   ++  +   FS  +         ++ + YE  +  F    +
Sbjct: 189 LDELIKRTGLPTLFENENRQIVQHLINLFSRADFS--EASYDILGDAYEWTLNYFAPTKA 246

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +  TP +V  L   L+   DD            + DP CG+G  L        +  
Sbjct: 247 KE-GEVYTPIEVSKLIAHLVEPRDD----------EVILDPACGSGSMLI-------EQY 288

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDPRRDLSKNIQQGSTLSKDLFT 288
                 P +V  GQE    T  +     ++  +   ++      S    +  +  K++  
Sbjct: 289 RFAGSNPNIVLVGQERNDVTAVLAKLNFILHGINLKDAKVFIGDSLLNPKFESFIKEVKK 348

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    ++NPP+ +    D+D ++   K   +  +  G P  +     ++  +      
Sbjct: 349 IDKADKVVANPPWNQDGY-DEDTLKVNEKYNYI--YKYGFPNKNSADWAWVQLINYY--- 402

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                 +A IVL S  LF       E  IR+  +++DLIEA+V LP  LF+       + 
Sbjct: 403 ---TEKKAGIVLDSGALFRS---GREKTIRKKFVDDDLIEAVVLLPEKLFYNCPAPGIIL 456

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           IL+  K EER+GK+  INA++ +     E KK   ++D+   +I   Y   ++   F ++
Sbjct: 457 ILNKNKPEERKGKILFINASNEYVK-HPEVKKLNKLSDENIEKIAKAYKEFKDVDGFCKV 515

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +D          +   L +  I +   +   E      KL   +   +  +   + +
Sbjct: 516 VDIEEIKNNDYNLNVSLYVFPIEEDEDIDLNEVYDELNKLHNEYLEKFEVVKGYLEE 572


>gi|254518116|ref|ZP_05130172.1| type I restriction-modification system DNA methylase [Clostridium
           sp. 7_2_43FAA]
 gi|226911865|gb|EEH97066.1| type I restriction-modification system DNA methylase [Clostridium
           sp. 7_2_43FAA]
          Length = 705

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/563 (15%), Positives = 193/563 (34%), Gaps = 56/563 (9%)

Query: 9   ASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             +   +W+ A+ L  + K   +++   +L    LR         +  +     +  G  
Sbjct: 5   KKIEKDLWEAADQLRANSKLTASEYSMPVLGLIFLRHAYNRFLVVKEEIEATLPSRNGRK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFEDFD 119
             +     ++  + Y         L             N+    I    +          
Sbjct: 65  RPVTQEDFMSKSAIYIPQIARYDYLLDLEEGADIGKAINDAMKSIEEEYETLAGALPKNY 124

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  +    LL  + + F+  EL        V   IYE+ + +F    ++   +F T
Sbjct: 125 ------NIFDNDLLADLIRIFNSDEL--QRATGDVFGRIYEYFLNKFAMSGAQEGGEFFT 176

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V +   ++                 ++DP CG+ G      + V   G++      
Sbjct: 177 PISLVQMIVNVIEPE-----------GGIVFDPACGSAGMAVQTGHFVESHGNNAN--DK 223

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSN 298
           +  +GQE       +    + +  L             QG+T  +D      +  + ++N
Sbjct: 224 ITFYGQEKADLNTKLAKMNLAVHGLNGKVI--------QGNTFYEDKHELLGKCDFVMAN 275

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +           L         +S+G+ L++ +    L    N  GRA  
Sbjct: 276 PPFNVDGVDSEKIKADPRLKYGLPGISSKGKSVSNGNYLWIQYFNTYL----NKTGRAGF 331

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V++SS      AG  E +IR  L+ +  ++ I+++  + F+  ++   LW     K E+ 
Sbjct: 332 VMASSA---TDAGGKEKDIRESLVRSGDVDVIISIGNNFFYTRSLPCTLWFFDKNKLEKN 388

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-IYVSR-ENGKFSR-----MLDYR 471
           + KV +I+A +++  +    +     + +Q + +   +++ R EN K+ +     +++Y 
Sbjct: 389 KDKVLMIDARNIFRKV---NRTINDFSPEQLKNLTSIVWLYRGENEKYLKLIKEYIVEYS 445

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
               +  +  +       L    L    +     +     ++ + + LK + + +  Y  
Sbjct: 446 NKSEKINEKSKEFERVLQLLVDQLEEFNSFKLIGEEDKEKKAEYYESLKALEKDMDKYFI 505

Query: 532 AESFVKESIKSNEAKTLKVKASK 554
            +  +   I+    K      + 
Sbjct: 506 DKEKLNNEIQDYLNKVKSYTDNA 528


>gi|189426563|ref|YP_001953740.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189422822|gb|ACD97220.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 486

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 180/485 (37%), Gaps = 65/485 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           + ++L   +W     L  D     +G  +        L+  +   +   +  R+ ++  G
Sbjct: 2   TTSALIQKVWNFCHTLRDDGVS--YGDYLEQLTYLLFLKMADEYAQEPYN--RDTHIPKG 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               D  S    +G          L  LG                     +     F + 
Sbjct: 58  ---HDWASLRGKSGEPLEAHYLAILHKLG-----------------TGPGMLGAIFFKAQ 97

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L ++ +     +     +      ++YE L+++   +   GA  + TPR +
Sbjct: 98  -NKIQDPAKLARLVQMIDAEKW--VGMDTDTKGDLYEGLLQKNAEDTKSGAGQYFTPRHL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPP 238
           +    A +           P  ++T+ DP CGTGGF   A   +   G        +   
Sbjct: 155 IDAMVACI----------RPEPLKTIADPACGTGGFFLGAHKWLTRPGSSLDKKQKEFLR 204

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               HG E+ P T  +C+  + +  +      D   N+ +   L  +    +RF Y L+N
Sbjct: 205 HKTFHGNEIVPNTRRLCLMNLFLHNI---GELDGEPNVDRSDALIAE--PKQRFDYVLAN 259

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFGKK        E E     L           S+  + FL H+A+ L+      G+AA
Sbjct: 260 PPFGKKSSMTFTNEEGEEDKDALTYERQDFWETTSNKQLNFLQHIASMLK----ETGKAA 315

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG    +IR+ LLEN  +  ++ LPT +F+   +   +     R  ++
Sbjct: 316 VVLPDNVLFEGGAGE---KIRKKLLENCDVHTVLRLPTGIFYAQGVKANVVFFDAR-PKD 371

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRT 472
            + + + +   DL T+ ++   K R + ++  ++ +  Y       R   +  +   Y  
Sbjct: 372 GKIQTKGVWFYDLRTN-KHFTLKTRTLKEEDLKEFITCYNPENRHERTEAERFKYFSYDE 430

Query: 473 FGYRR 477
              R 
Sbjct: 431 LIARD 435


>gi|253775030|ref|YP_003037861.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|301022251|ref|ZP_07186149.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
 gi|146398|gb|AAA23985.1| restriction-modification enzyme type I M subunit [Escherichia coli]
 gi|242379864|emb|CAQ34698.1| host modification; DNA methylase M, subunit of EcoKI
           restriction-modification system [Escherichia coli
           BL21(DE3)]
 gi|253326074|gb|ACT30676.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980326|gb|ACT45996.1| DNA methylase M [Escherichia coli BL21(DE3)]
 gi|299881301|gb|EFI89512.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
          Length = 529

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 111/585 (18%), Positives = 207/585 (35%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADNQKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    +Y         R  G+
Sbjct: 361 TVANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRSEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +     + ++ DI+W K      +  L
Sbjct: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFTREWIRTTKSDSLDISWLKDKDSIDADNL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E   S+EA   +    ++F
Sbjct: 480 PEPDVLAAEAMGELVQALGELDALIRELGASDEADAQRQLLEEAF 524


>gi|78484677|ref|YP_390602.1| N-6 DNA methylase [Thiomicrospira crunogena XCL-2]
 gi|78362963|gb|ABB40928.1| Type I restriction-modification system, M subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 709

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/558 (18%), Positives = 212/558 (37%), Gaps = 64/558 (11%)

Query: 6   GSAASLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               ++   +WK+A+ L    +    ++   ++    LR         +  +     + G
Sbjct: 5   QQIEAIEKRLWKSADGLRSGSELASNEYFMPVMGIIFLRHAYSRYLKVKEEIVTTLPSRG 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           G   DL         + +  ++     L S T++ +  E+ I      A    E  D+ S
Sbjct: 65  GKTRDLTLEDFSQKGAIFLNAKAQFDYLVSLTDSDDRAEAIIE-----AMESIEK-DYDS 118

Query: 123 TIARLEKAGLLYKICKNFSGI--ELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
              +L K        +    +   L+PD    +   +   IYE+ + +F  + +    +F
Sbjct: 119 LKGQLPKDEYKSIPNEILGTLLRNLNPDELKKMDGDIFGRIYEYFLTQFAGQGAHDGGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V +    +++PD             ++DP CG+GG    + + V     H    
Sbjct: 179 FTPISIVQMIVN-VIEPDHG----------KVFDPACGSGGMFVQSAHLVESM--HKNPS 225

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYC 295
            +L  +G E    T  +    + +  LE            +  T  KD   G      + 
Sbjct: 226 QLLTFYGHEKNTTTTRLAKMNLQVHGLEGQIA-----GGNEAITYYKDPHEGLWGDTDFV 280

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF    E D D ++ + +            K+S+G+ L+  +  + L    +  GR
Sbjct: 281 MANPPFNVD-EVDADKIKNDRRLVFGLPGVNKNGKVSNGNYLWASYFYSYL----SDTGR 335

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  V+SS       AG  E+E+R+ L++   ++A++ + ++ F+  ++   LW  +  K 
Sbjct: 336 AGFVMSSQA---SSAGGKEAEVRKELVKTGHVDAMIDIRSNFFYTRSVPCQLWFYNKGKP 392

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +E   KV +++A +++  +               R+I D  + +     S    YR    
Sbjct: 393 QEHLDKVLMVDARNVFRKVT--------------RKIYDFSLEQLQNLTSIFWLYRGQTN 438

Query: 476 RRIKVLRPL--------RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           R I++++             F  D+     +E       +S   + F+L   +P + Q+ 
Sbjct: 439 RFIELVKSYIQQSLDLANALFKADQELPGLVEFTANMTAISEAVKPFYLIQDEPYVTQLN 498

Query: 528 PYGWAESFVKESIKSNEA 545
            +  A +   +  K  EA
Sbjct: 499 EFQEALTLFIKDTKQYEA 516


>gi|124010329|ref|ZP_01694979.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC
           23134]
 gi|123983603|gb|EAY24056.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC
           23134]
          Length = 496

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 99/468 (21%), Positives = 172/468 (36%), Gaps = 63/468 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVRE 57
           MTE     AS+ + +W  A+ L  D     +G     I     L+               
Sbjct: 1   MTE-----ASIVSKVWNFADVLRDDGVG--YGDYLEQITYLLFLK--------------- 38

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSDNAKAI 114
             +A     +D      + G    N  + S   L S             + S     K I
Sbjct: 39  --MAEESGRVDFPRLKDINGNELPNGEQCSWQNLRSKKGAALEAFYTQMLRSLGSE-KGI 95

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F+    +++    L KI    +  +    ++   +   IYE L+ +  S+V  GA
Sbjct: 96  LGQI-FTKAQNKVQDPAKLLKIIDMINREDWS--SMGADLKGKIYEGLLEKNASDVKSGA 152

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
             + TPR ++    A +           P   +T+ DP+CGTGGF   A +++ D     
Sbjct: 153 GQYFTPRALIQAMVACV----------QPQPNKTIVDPSCGTGGFFLAAYDYIVDNHELD 202

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K       +G E+   T  +C+  M +  +       L       S  +      +
Sbjct: 203 RDEKKFLKKETFYGNEIVASTRRMCLMNMFLHNIGEIDGASLIS-----SADALIAQGSQ 257

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELP 349
           R  Y L+NPPFGKK        + E +  +L           S+  +  L H+ + L++ 
Sbjct: 258 RHDYVLANPPFGKKSSMTITNEDGEQERQDLSYNRQDFWATTSNKQLNVLQHIKSLLKV- 316

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G AA+VL  + LF G AG     +R+ LL+   +  I+ LPT +F+   +   +  
Sbjct: 317 ---NGEAAVVLPDNVLFEGGAGE---TVRKELLKTTELHTILRLPTGIFYANGVKANVLF 370

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             N K   +    Q +   D  T++ +  +K+  +     +  + +Y 
Sbjct: 371 FDN-KAAAKTPWTQEVWVYDYRTNVHHTLRKKP-LRLADLQAFVKLYN 416


>gi|77164707|ref|YP_343232.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|254433310|ref|ZP_05046818.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|76883021|gb|ABA57702.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|207089643|gb|EDZ66914.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 499

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 180/499 (36%), Gaps = 80/499 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           + AS+ + +W     L  D     +G  +        L+  +   +P             
Sbjct: 2   NTASIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMADEYSQP------------- 46

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                                EY+  +L +         YIA          +     F+
Sbjct: 47  -----------PYRREVGIPPEYNWQSLKTKRGAELEGHYIALLRALGARPGMLGQI-FT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++    LY++ K   G++     +   +  +IYE L+ +   +   GA  + TPR
Sbjct: 95  KAQNKIQDPAKLYRLIKMVDGVQW--VMMGADIKGDIYEGLLEKNAEDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHK 235
            ++      +           P   RT+ DP CGTGGF   A + ++D        +   
Sbjct: 153 ALIKAIVECV----------RPEPDRTIADPACGTGGFFLAAYDFLSDPKHYSLDKAQKH 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                  HG E+   T  +C+  M +  + E D    +S N            +G+ + Y
Sbjct: 203 FLKHETFHGNEIVANTRRLCLMNMFLHHIGEIDGESAISPNDAL------VAPSGQSYDY 256

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGG 353
            L+NPPFGKK        E E ++ +L           S+  + F+ H+   L+      
Sbjct: 257 VLANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWATTSNKQLNFVQHIRTLLKT----T 312

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+V+  + LF G AG     IRR LLEN  +  I+ LPT +F+   +   +    NR
Sbjct: 313 GKAAVVVPDNVLFEGGAGE---TIRRKLLENTDLHTILRLPTGIFYAHGVKANVLFFDNR 369

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFS------ 465
           +        + +   D  T++ +  KK+  +  +   + +  Y   +R   + S      
Sbjct: 370 EASPHPW-TKEVWYYDYRTNVHHTLKKKP-MRYEDLAEFIACYHPTNRHERRESWHGEKN 427

Query: 466 -----RMLDYRTFGYRRIK 479
                R  +Y T   R   
Sbjct: 428 PEGRWRKFNYETLAARDKT 446


>gi|269976584|ref|ZP_06183569.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris
           28-1]
 gi|269935385|gb|EEZ91934.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris
           28-1]
          Length = 469

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/524 (19%), Positives = 178/524 (33%), Gaps = 88/524 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               +   +WK  + L        + + +   T +  L                      
Sbjct: 2   KNQEIVAKLWKLCDVLRD--DGITYHQYVTELTYILFL---------------------- 37

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDNAKAIFEDFDFSST 123
                  K  G       +Y    L        +      +    + A+   ++    ++
Sbjct: 38  ----KMAKETGTEDGIPEQYRWDVLRQKSGIELKRYYRDLLQYLGEEARGRIQEIYAGAS 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI K+   ++    T  +  + N+YE L+ +  +E   GA  + TPR +
Sbjct: 94  TN-IDEPKNLEKIIKSIDALDWF--TAREEGLGNLYEGLLEKNANEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           + +   L            P       DP CGT GF+  A ++V +              
Sbjct: 151 IDVMVRLT----------KPQPGELCNDPACGTFGFMIAAFDYVREHTDKFFDLNQDEAH 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + +   ++  +E+            G TLS      K F   
Sbjct: 201 FEIQKAFTGVELVHDTHRLALMNAMLHSIEAPITL--------GDTLSPLGKHLKNFDVV 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE           S+  + FL H+   L+     GGR
Sbjct: 253 LTNPPFGTK------------KGGERATRDDLTFPTSNKQLNFLQHIYRSLK----SGGR 296

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G     IR+  ++   +  I+ LPT +F+   + T +      KT
Sbjct: 297 AAVVLPDNVLFADGDG---KRIRQDFMDKCNVHTILRLPTGIFYAQGVKTNVLFFQRGKT 353

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +  +G  + +   DL T++ + GK+  +     R    D   + E      + D R   Y
Sbjct: 354 D--KGNTKRVWYYDLRTNMPSFGKRTPLT----REHFTDFETAYEAENREAVNDERWSSY 407

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            R ++         LD   + +    I W    P  Q+     L
Sbjct: 408 SREEIATK---EDTLDLGLMKQETETIDWNNYDPAEQASEAADL 448


>gi|268609820|ref|ZP_06143547.1| type I restriction-modification system methyltransferase subunit
           like protein [Ruminococcus flavefaciens FD-1]
          Length = 452

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 168/406 (41%), Gaps = 54/406 (13%)

Query: 80  FYNTSEYSLSTLGSTNTRNNL-------ESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
           FY       S +    + N++        + I   +   K       F++  A   K   
Sbjct: 2   FYLKETARWSYIVKNASANDIAVIIDQAMADIEDSNPPLKGALPLNLFATLGADKSKIKD 61

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L       S      +     ++  +YE+ ++ + +  ++   +F TP  VV L   ++ 
Sbjct: 62  LIDNVNQISEERFQEE----DLIGRVYEYFLQVYAASGTKEDGEFYTPACVVKLIAEMI- 116

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P     +YDP CG+GG    ++  V     + +   I+   GQE  P+T 
Sbjct: 117 ---------EPYSG-VVYDPCCGSGGMFVQSLKFVDRHNGNRQKVSII---GQESNPDTW 163

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +C   + IR +        +      ST + DL   K   Y ++NPPF  K  + +D +
Sbjct: 164 RLCKMNLAIRGIAH------NLGDTNASTFTNDLHKDKTVDYIMANPPFNLKGWRAEDEL 217

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             + +    G     +P +++ +  +++H+ +KL++     G A  +L++  L    A  
Sbjct: 218 VNDSRFMRAGYSV--MPPVANANYAWILHMLSKLDV---NHGVAGFLLANGAL---NASD 269

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---------EERRGKVQ 423
            E  +R+ +LE D +EAI+ LP D+F+ T+I+  LWI++  K           +R  +V 
Sbjct: 270 AEGTLRKEILERDRVEAIIVLPRDMFYTTDISVTLWIVNMNKKACTVNGRQLRDRTNEVL 329

Query: 424 LINATDLWTSIRN------EGKKRRIINDDQRRQILDIYVSRENGK 463
            ++     ++I        + KK+ +  D+Q  +   IY + ++  
Sbjct: 330 FMDLRSWDSNIEEIVIDKGKRKKKTVFTDEQIAEAKTIYNNWQSSD 375


>gi|160939174|ref|ZP_02086525.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438137|gb|EDP15897.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC
           BAA-613]
          Length = 496

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 110/561 (19%), Positives = 204/561 (36%), Gaps = 79/561 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVRE 57
           M E T +   + + +W     L  D     +G  +        L+  +   +P     R+
Sbjct: 1   MLEQTTT---IISKVWGMCNPLRDDGVS--YGDYLEQLTYLIFLKMSDEYAKPPYK--RD 53

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             +  G +  D+                   +TL      +  ++ +    + A  I   
Sbjct: 54  TGIPSGYTWSDM-------------------NTLKGAELEDQYKATLEKLGEQA-GILGQ 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F   + ++  A +LY++ +  +  +     +   V   IYE L+++   ++  GA  +
Sbjct: 94  I-FKGAVNKISNAAILYRVVQMINNEKW--VAMSSDVKGEIYEGLLQKNAEDIKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----- 232
            TPR ++      L           P  ++T+ DP CG+GGF   A + +AD  +     
Sbjct: 151 FTPRPLIRAMVRCL----------RPEPMKTIADPCCGSGGFFLAAQSFLADPNNYALDR 200

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +G E+ P T+   +  + +  +        +  I  G  L  D   G R
Sbjct: 201 EQKGFLKNETFYGNEIVPATYKTALMNLYLHNIGDIYG---NVPITLGDALLTD--PGYR 255

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPP 350
             Y ++NPPFGKK        E E ++ +L          S +  + F+ H+   L+   
Sbjct: 256 VDYVMTNPPFGKKSSITFTNEEGEQEDEDLVYNRQDFWTTSSNKQLNFVQHINTILKA-- 313

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA+V+  + LF G AG     +R+ LLE   +  I+ LPT +F++  +   +   
Sbjct: 314 --TGKAAVVVPDNVLFEGGAGEV---VRKKLLETTDLHTILRLPTGIFYKPGVKANVLFF 368

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM--- 467
             R    +R + + +   DL T+I    K+   + D      +  Y      ++ R    
Sbjct: 369 DKRPASAQR-QTKEVWIYDLRTNIHFTLKQHP-MTDADLEDFVCCYH--PENRYERTETY 424

Query: 468 -LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             D     +R+  +          DKT L     DI W K   L     L     +   I
Sbjct: 425 SADNPDGRFRKFSIEE----IMERDKTSL-----DIFWIKDKSLADLDNLPSPDELANDI 475

Query: 527 YPYGWAESFVKESIKSNEAKT 547
                +      ++++   K 
Sbjct: 476 IENLQSALDSFTALQAQLNKG 496


>gi|325913562|ref|ZP_08175927.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
 gi|325477141|gb|EGC80288.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
          Length = 606

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 183/487 (37%), Gaps = 59/487 (12%)

Query: 7   SAASLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L + +W++A+ L          +   +L    LR      +   + + +   + GG
Sbjct: 3   NIRKLESELWESADLLRSGSKLTSNQYCMPVLGLIFLRYAYSRYKMVEAEILKGRPSRGG 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLESYIASFSDNAKAI 114
             + +E+    A  + Y   E     L             N   +  + +    +NA  +
Sbjct: 63  RVMPVEASDFAAKSALYLPKEAQYDYLLKLPEDISSASLVNKDGHSMNSLGEVVNNAMQL 122

Query: 115 FEDFDFSSTIARLEKAGLLY------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            ED      I  L K+   +      ++ + F+   L  D +   ++  IYE+ + +F  
Sbjct: 123 IEDQS-EQLIGVLPKSYTDFSDEILSELLRIFNNSAL--DEIDGDIIGRIYEYFLNKFAK 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            ++     F TP+ +V +   ++      L            DP CG+GG    + + V 
Sbjct: 180 NIASDDGVFFTPKSLVKMIVNIIEPKSGVLL-----------DPACGSGGMFIQSGDFVN 228

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G +      +  +GQE       +C+  M +  L    +     N       + D   
Sbjct: 229 AAGMNAN--RTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEANSFYHDAHNLDG-- 284

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANK 345
                Y ++NPPF      DK   E       L    PG+ K   + + + L++ +  + 
Sbjct: 285 --CCDYVMANPPFNV----DKVKAEACESAKRLPFGMPGINKNKEVGNANYLWISYFYSY 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GRA  V++SS      +   +  IR  L++   ++ ++++  + F++  +  
Sbjct: 339 L----NKKGRAGFVMASSA---TDSQGKDKTIREKLVKTGHVDVMISVGKNFFYKKTLPC 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENG 462
            LW    RK E  + KV  I+A + +T +    +      D Q +    I+ +Y   E  
Sbjct: 392 SLWFFDKRKAEPIKDKVLFIDARNYYTVV---DRALNEWTDWQLKNMNAIVWLYRG-EID 447

Query: 463 KFSRMLD 469
           K+S +L+
Sbjct: 448 KYSNLLN 454


>gi|260221109|emb|CBA29345.1| Type I restriction enzyme StySJI M protein [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 484

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/547 (19%), Positives = 188/547 (34%), Gaps = 75/547 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  ++   E   S + + +       
Sbjct: 2   ATQDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMEHENAESGILQAH------- 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                  K+  Y+ +      L++    N  N+    +   S +   +      +     
Sbjct: 53  -------KLPDYARWPE----LTSRSGLNLLNHYRETLLKLSQSPDRLISAIY-ADAQTS 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L ++ K+  GI+    +     + ++YE L+ +  SE   GA  + TPR ++  
Sbjct: 101 LKEPRHLEQLVKSLDGIDWF--SARQDGLGDLYEGLLEKNASETKSGAGQYFTPRPLIDA 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHKIPP 238
              L+           P    T+ DP  GT GFL  A  ++ D                 
Sbjct: 159 IVQLM----------QPQPGETVQDPAAGTAGFLIAADRYIKDHTDDLYNLTEKQRSFQR 208

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL   T  + +   L+  +E D    +      G+TL +      + H  LSN
Sbjct: 209 NQAFLGMELVGSTRRLALMNCLLHGMEGDDEGVVHV----GNTLGQAGAALPKCHLSLSN 264

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG              K G            S+  + FL H+   L      GGRAA+
Sbjct: 265 PPFGTA------------KGGGGPTRDDLTFATSNKQLAFLQHIVRHLR----DGGRAAV 308

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF    G+   ++RR L++   +  I+ LPT +F+   + T +       ++  
Sbjct: 309 VLPDNVLFEAGVGA---DVRRDLMDKCRLHTILRLPTGIFYAQGVKTNVLFFEKV-SQAA 364

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
            G    +   D+  +    G KR  + D      +  Y +  NGK  R        +RR 
Sbjct: 365 TGSTSAVWVYDMRANAPKFG-KRTPLTDAHFADFITAYGTDPNGKAERQDQGEQGRFRRF 423

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                    +I  + G +    DI W K      +  L     + ++      A     E
Sbjct: 424 S------REWIASERGDS---LDIAWLKDDNAEDAADLPEPAVLAREAVDELNAAVAELE 474

Query: 539 SIKSNEA 545
           +I     
Sbjct: 475 AILVELG 481


>gi|225573220|ref|ZP_03781975.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039352|gb|EEG49598.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM
           10507]
          Length = 606

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 99/543 (18%), Positives = 197/543 (36%), Gaps = 52/543 (9%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L   +W++A+ L          +   +L    LR      +   + + +   + GG
Sbjct: 3   NIRKLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRYKMVETEILKNRPSRGG 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117
             + LE+    A  + Y   E     L        S    N     + S  +      + 
Sbjct: 63  RVMPLEASDFAAKSALYLPKEAQYDYLLNLPDDIASAAILNKDGHTMNSLGEVVNNAMQL 122

Query: 118 FDFSSTIAR--LEKAGLLY------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +  S      L K+   +      ++ + F+   L  D V   ++  IYE+ + +F   
Sbjct: 123 IEEQSEQLTGVLPKSYTDFSDEILSELLRIFNNSAL--DEVGGDIIGRIYEYFLNKFAKN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     F TP+ +V +   ++      L            DP CG+GG    + + V  
Sbjct: 181 IASDDGVFFTPKSLVKMIVNIIEPKSGILL-----------DPACGSGGMFIQSGDFVNH 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      +  +GQE       +C+  M +  L    +     N       + +    
Sbjct: 230 SGMNAN--NTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEANSFYYDAHNLNG--- 284

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKL 346
               Y ++NPPF      DK   E     G L    P + K   IS+G+ L++ +  + L
Sbjct: 285 -CCDYVMANPPFNV----DKVKAESAESAGRLPFGTPAVNKNKEISNGNYLWISYFYSYL 339

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  GRA  V++SS      +   + +IR  L++   ++ +V++  + F+  ++   
Sbjct: 340 ----NENGRAGFVMASSA---TDSQGKDKDIREKLVKTGHVDVMVSVGNNFFYTKSLPCS 392

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           LW     K+EE + KV  I+A + +T +     +           I+ +Y          
Sbjct: 393 LWFFDKGKSEETKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYRGEIEKYHQL 452

Query: 467 MLDYRTFGYRRIKVLRPLRM--SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +Y+    + I     L +    + D    A++E     R      Q ++ +++    +
Sbjct: 453 IAEYKNVLGKAISFEESLHLLKEELKDLQKRAKIEMKAAGRNDKKRVQVYYDELIAAKNE 512

Query: 525 QIY 527
           +I 
Sbjct: 513 EII 515


>gi|229195091|ref|ZP_04321866.1| N-6 DNA methylase [Bacillus cereus m1293]
 gi|228588320|gb|EEK46363.1| N-6 DNA methylase [Bacillus cereus m1293]
          Length = 484

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 186/491 (37%), Gaps = 68/491 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T +  L+   E   S+V ++        
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYLTELTYILFLKMMNEKGNSSVEDRVNIEHVIP 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +      V+         Y    L   ++ N++   I               ++     
Sbjct: 60  EEYRWESLVSREGIELKEHYQRLLLELGSSDNSILRQI---------------YADASTS 104

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + +   L KI K+   ++ +        + ++YE L+ +  SE   GA  + TPR ++ +
Sbjct: 105 ISEPKNLEKIIKSIDNLDWY--NAEKEGLGDLYEGLLEKNASETKSGAGQYFTPRVLIDV 162

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              L+           P +     DP  GT GF+  A  ++ +    +        +   
Sbjct: 163 MVKLV----------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDPEQAEFQK 212

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   L+  +E          ++QG TLS +    K F   L+N
Sbjct: 213 TEAFTGMELVKDTHRLALMNALLHGIEG--------RLEQGDTLSSNGKWIKNFDVILTN 264

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE         + S+  + FL  + N L+   +G  RAA+
Sbjct: 265 PPFGTK------------KGGERATRDDLTFETSNKQLNFLQLIYNALK--DDGNARAAV 310

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+  
Sbjct: 311 VLPDNVLFEGGIGA---QIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKTD-- 365

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +   + +   DL T++ + G KR  + +    + +  Y +    K S + D R   + R 
Sbjct: 366 KNSTKEVWVYDLRTNMPSFG-KRTPLTEANFEEFMKAYHA---EKRSNVEDERWNVFTRE 421

Query: 479 KVLRPLRMSFI 489
           ++ +      I
Sbjct: 422 EIAKKDDSLDI 432


>gi|293393085|ref|ZP_06637400.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM
           4582]
 gi|291424231|gb|EFE97445.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM
           4582]
          Length = 529

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 170/467 (36%), Gaps = 78/467 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +   E+YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEEEYLPVG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F+  + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADEQKLVQAVFQSVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +   D        ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSNMDSLDWYNGSDGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIVHLL----------KPQPREIVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 VVMTNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
                 + +     +   DL T++ + G KR    +   +    +Y 
Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYG 406


>gi|304396444|ref|ZP_07378325.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp.
           aB]
 gi|304355953|gb|EFM20319.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp.
           aB]
          Length = 529

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 111/585 (18%), Positives = 207/585 (35%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL++ +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKARIGQDQLQFY---------------RNLLVHLGADNQKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREIVQDPAAGTAGFLIEADRYVKSQTNDLDDLDNDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D  T    H
Sbjct: 204 QDFQIHRAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGETLPMAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 VVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIVETLLP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
              K  + +     +   DL T++ + G KR    DD  +    ++         R  G+
Sbjct: 361 TVAKPTQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDDHLQPFERVFGEDPHGLSPRSEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +     + ++ DI+W K      +  L
Sbjct: 420 WSFNAEEAEIADSEENKNTDQHLATSRWRKFSREWIRTTKSDSLDISWLKDKDSIDADSL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E   S+EA   +    ++F
Sbjct: 480 PEPGILAAEAMGELVQAMGELDALMRELGASDEADAQRQLLQEAF 524


>gi|251791238|ref|YP_003005959.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           zeae Ech1591]
 gi|247539859|gb|ACT08480.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           zeae Ech1591]
          Length = 533

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 112/577 (19%), Positives = 203/577 (35%), Gaps = 80/577 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAFGGS 65
           S   +   +W   + L       ++   +    LL  ++   E T + + +++ L  G  
Sbjct: 2   SNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAELLDQHILPEGCR 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             DL +   +   + Y    +SLST  + + +   +  +       +AI+ D        
Sbjct: 60  WADLNNKSGLTLLNDYKQILFSLSTGKTADGKLVHDDAL------IRAIYAD-----AQT 108

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL +   L ++ +    I+    +     + ++YE L+ +  SE   GA  + TPR +++
Sbjct: 109 RLREPRHLAQMIRTLDQIDWF--SAQRDGLGDLYEGLLEKNASETKSGAGQYFTPRPLIN 166

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIP 237
                +           P     + DP  GT GFL  A   +               +  
Sbjct: 167 SMVRCI----------KPQAGEVIQDPAAGTAGFLIAADQFIKQLTNSLYELDLKQQEFQ 216

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL P T  + +   L+  +E D    + +    G   S+           L+
Sbjct: 217 RKKAFIGIELVPSTRRLALMNCLLHNMEGDDEGVVHQGNALGMAGSR----LPNADVILA 272

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG     +      +              K S+  + FL H+   L+     GGRAA
Sbjct: 273 NPPFGTSKGGEASITRDDL-----------TFKTSNKQLAFLQHIYRNLKP----GGRAA 317

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---RK 414
           +VL  + LF    G   ++IRR L+    +  I+ LPT +F+   + T +   S      
Sbjct: 318 VVLPDNVLFEAGVG---TDIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFSKGTVNN 374

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKFS-- 465
            ++     + +   DL T++ + G KR    +        +Y         R  G++S  
Sbjct: 375 PQQDENCTENVWVYDLRTNMPSFG-KRTPFGETHLAPFEAVYGDDPHGQSPRTEGEWSFT 433

Query: 466 RMLDYRTFGYRRI---KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL-----D 517
              D       +       R     +I D  G +    DI+W K      +  L      
Sbjct: 434 HTDDSAELSDDQRLETSRWRVFSREWIRDSKGDS---LDISWLKDHNSIDAASLPEPGIL 490

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             + M +     G  ++ ++E    +EA   KV    
Sbjct: 491 AAEAMGELTQALGELDALLRELGADDEADAQKVLLQA 527


>gi|254225987|ref|ZP_04919588.1| N-6 DNA Methylase family [Vibrio cholerae V51]
 gi|125621521|gb|EAZ49854.1| N-6 DNA Methylase family [Vibrio cholerae V51]
          Length = 552

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 196/581 (33%), Gaps = 96/581 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L + +WK  ++L        +   +  L     L+          +   E  L  G
Sbjct: 2   NNNDLVSKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEEDLLPKG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+  +    + FY      L  LG  N      + + +             F + 
Sbjct: 54  YRWDDLKKKMGQEQHQFY---RKLLVQLGDDN-----HAIVRAI------------FQNA 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              + +   L ++  N   ++ + +           ++YE L+++  +E   GA  + TP
Sbjct: 94  NTTIREPKQLTELVSNMDSLDWYDNDGTGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------S 232
           R ++     L+           P     + DP  GT GFL +A  ++             
Sbjct: 154 RSLISTIVELI----------KPQPREIIQDPAAGTAGFLIEADKYIKAQTNDLDELPLD 203

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +        G EL PET  + +   L+  +E D        I+ G+TL     +  + 
Sbjct: 204 DQEFQRTKAFVGLELVPETRRLALMNCLLHDIEGDENEGA---IRLGNTLGSAGESLPKA 260

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  L+NPPFG     +                   +    +  + F+ H+ + L      
Sbjct: 261 NVILTNPPFGSAASTNITRT--------------FVHPTGNKQLCFIQHIYDAL----EP 302

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRAA+V+  + LF G  G   +EIRR L++   +  I+ LPT +F+   + T +     
Sbjct: 303 GGRAAVVIPDNVLFEGGKG---TEIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFQK 359

Query: 413 RKTEE---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR--- 466
              E     +G  + I   D+ T+I N   KRR + D      +  Y    NG+  R   
Sbjct: 360 GTQENPMQDKGCTKEIWVFDMRTNI-NTFGKRRPLTDKHFEAFIAAYGEDPNGQSPREEG 418

Query: 467 MLDYRTFGYRRIK----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +       Y                R     +I D+ G +    DI+W K      +  L
Sbjct: 419 VYHTEGAIYAEGTDSVEHVIDNARWRKFSREYIRDQKGDS---LDISWLKDLEATSAENL 475

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                +  +              +        + +A K  I
Sbjct: 476 PEPDVLAGEAMAELTEAMSELYQLMQALGANDEAQAQKQLI 516


>gi|108563889|ref|YP_628205.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837662|gb|ABF85531.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 670

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 189/472 (40%), Gaps = 47/472 (9%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F SE  +    F TP +V        L        E+    +++YDPTCG+G  L  
Sbjct: 1   MRHFASESGKSKGQFYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLK 54

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A +     G        L  +GQE +  T A+C   M++             +       
Sbjct: 55  ASSLAGKNG--------LTIYGQEKDISTTALCKMNMILHNSADADIAKGGSSTLSNPLF 106

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFL 339
           + +    K F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL
Sbjct: 107 TTENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEKNGDFAFL 166

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H+   L+      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+
Sbjct: 167 LHIIKSLK----NTGKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFY 219

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS- 458
            T+I   + +L  +    R+G V +I+A+  +    N+ +    + +   ++++D + + 
Sbjct: 220 GTSIPACVIVLDKKNARARKG-VFVIDASKDFKKDGNKNR----LREQDVQKMIDTFNAL 274

Query: 459 RENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +E   +S+M+           + + R +      +K   A + +     K      + + 
Sbjct: 275 KEIPYYSKMVSLEEISANDYNLNIPRYIAAKQESEKDLFALINSPSYLPKNEINLYAPYF 334

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS--KSFIVAFINAFGRKD------ 568
            + K +   ++     E +     +    K    ++S  ++F  + ++AF R D      
Sbjct: 335 RVFKELKNTLFKKSDKEGYYALKTECENIKDYITQSSEFQAFHASVLSAFDRLDLFETFE 394

Query: 569 ---PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY--FVREVSPHVPDAY 615
              P  +P T +  E +    L E+E    L+    Y  F    +  + D +
Sbjct: 395 HLEPGFNPKTLI--ESVCSRVLKEFEKGEILDKYGVYQLFKDYYNEVLQDDW 444


>gi|313674352|ref|YP_004052348.1| site-specific DNA-methyltransferase (adenine-specific) [Marivirga
           tractuosa DSM 4126]
 gi|312941050|gb|ADR20240.1| Site-specific DNA-methyltransferase (adenine-specific) [Marivirga
           tractuosa DSM 4126]
          Length = 504

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 175/465 (37%), Gaps = 51/465 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVRE 57
           MTE     +SL + +W  A  L  D     +G     I     L+  +    P  +   +
Sbjct: 1   MTE-----SSLISKVWNFANVLRDDGVG--YGDYLEQITYLLFLKMADELTRPPYNKKMD 53

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                     ++E       Y  + T    LS              + S     K I   
Sbjct: 54  FPRIKDTEGHEIED----GDYCNWET----LSKKRGAELEAYYSQMLRSLGTE-KGILGQ 104

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F+ +  +++    L ++       +     V   V  +IYE L+ +  S+   GA  +
Sbjct: 105 I-FTKSQNKIQDPSKLLRVIDMIGKEQWT--MVGADVKGDIYEGLLEKNASDTKSGAGQY 161

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++    A +          +P  +++++DP+CGTGGF   A +++      +K  
Sbjct: 162 FTPRSLIQAMVACV----------APEPMKSIHDPSCGTGGFFLAAYDYIIKNHELNKEQ 211

Query: 238 PIL----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G E+   T  +C+  M +  +      D    I     L  D   G R  
Sbjct: 212 KAFLKNSTFSGNEIVAGTRRLCLMNMFLHNI---GEIDGETFISPNDALIAD--EGNRVD 266

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNG 352
           Y L+NPPFGKK        E E +  EL          S +  + FL H+ + L++    
Sbjct: 267 YVLANPPFGKKSSMTITNEEGEQEKQELSYNRQDFWATSSNKQLNFLQHIRSLLKI---- 322

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G AA+VL  + LF G +G     +R+ L++   +  I+ LPT +F+   +   +    N
Sbjct: 323 NGEAAVVLPDNVLFEGGSGE---TVRKELMKTTELHTILRLPTGIFYAHGVKANVLFFDN 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            K   +    Q +   D  T++ +  KK   +  +  +  ++ Y 
Sbjct: 380 -KPASKEAWTQDVWIYDYRTNVHHTLKK-NTMKLEDLQDFINCYN 422


>gi|254164266|ref|YP_003047376.1| DNA methylase M [Escherichia coli B str. REL606]
 gi|253976169|gb|ACT41840.1| DNA methylase M [Escherichia coli B str. REL606]
          Length = 529

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 110/585 (18%), Positives = 206/585 (35%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADNQKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL                 + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KSQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    +Y         R  G+
Sbjct: 361 TVANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRSEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +     + ++ DI+W K      +  L
Sbjct: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFTREWIRTTKSDSLDISWLKDKDSIDADNL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E   S+EA   +    ++F
Sbjct: 480 PEPDVLAAEAMGELVQALGELDALIRELGASDEADAQRQLLEEAF 524


>gi|228472619|ref|ZP_04057379.1| type I restriction enzyme EcoKI M protein [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276032|gb|EEK14788.1| type I restriction enzyme EcoKI M protein [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 472

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/533 (18%), Positives = 182/533 (34%), Gaps = 85/533 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T +  L             K      S 
Sbjct: 2   NNQEIVAKLWALCNVLRD--DGITYHQYVTELTYILFL-------------KMAKETNSE 46

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            ++    +            +L +      +   E  +    +  +   ++   +   + 
Sbjct: 47  GEIPEAYR----------WDTLVSKDGIPLKKFYEELLEHLGEQCRGRIQEIY-AGAKSN 95

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E+   L KI K    ++ +  +  +  + N+YE L+ +  +E   GA  + TPR ++ +
Sbjct: 96  IEEPKNLEKIIKTIDALDWY--SAKEEGLGNLYEGLLEKNANEKKSGAGQYFTPRVLIDV 153

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPP 238
            T L            P       DP CGT GF+  A  ++ D             +   
Sbjct: 154 MTELT----------HPQAGERCNDPACGTFGFMIAADRYIKDQTDDLFSLSQEMQEFQI 203

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  ETH + +   ++  ++           Q G TLS        +   L+N
Sbjct: 204 NEAFSGGELVHETHRLALMNAMLHDIKGPI--------QLGDTLSSLGKQMTGYDVVLTN 255

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE           S+  + FL H+   L+     GGRAA+
Sbjct: 256 PPFGTK------------KGGERATRDDLTFPTSNKQLNFLQHIYRSLKR----GGRAAV 299

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF    G     IR+ L+E   +  I+ LPT +F+   + T +       ++  
Sbjct: 300 VLPDNVLFVDGDGE---RIRKDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFERGLSD-- 354

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-------R 471
           +G  Q +   DL +++ N G K   +  +   + +  Y    + +  R   Y       R
Sbjct: 355 KGNTQEVWFYDLRSNMPNFG-KTNPLKREHFDEFVQCYQR--DDRHKRQETYSEENPQGR 411

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              Y   ++    + S  L          DI   +L    +     I + + Q
Sbjct: 412 WRRYTYEEICARDKTSLDLSWIRQGEETEDIPLSELIATMEEKAAKITEAIAQ 464


>gi|300725853|ref|ZP_07059318.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP)
           [Prevotella bryantii B14]
 gi|299776866|gb|EFI73411.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP)
           [Prevotella bryantii B14]
          Length = 598

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/483 (18%), Positives = 174/483 (36%), Gaps = 50/483 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE   +   L   +W++A+ L        + +   +L    LR      +   + + + 
Sbjct: 4   MTEK-INIRKLEADLWESADLLRAGSKLTSSQYCMPVLALLFLRYAYSRFKMVEAELLKN 62

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-------TNTRNNLESYIASFSDNA 111
             + GG  + +E     A  + Y   E     L +           N   + +   S+  
Sbjct: 63  RPSRGGRVMPVEPSDFAAKSALYLPREAQFDYLVNLSDDQPLGEAVNRAMTLVEEQSEQL 122

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             I            +    LL ++ + F+   L  D +   V+  IYE+ + +F   V+
Sbjct: 123 TGILPKSY------TMFSDELLRELLRIFNNKTL--DEIGGDVIGRIYEYFLSKFAKAVA 174

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                F TP+ +V +   +L      +            DP CG+GG      + V   G
Sbjct: 175 SDDGVFFTPKSLVKMLVNVLEPEQGVML-----------DPACGSGGMFVQTGDFVNAGG 223

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  +GQE       +C+  M +  L          N       +       +
Sbjct: 224 MNANTQ--MTFYGQEKVEYNAQLCLMNMAVHGLNGRIVSGDEANSFYHDAHN----LAGK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI----SDGSMLFLMHLANKLE 347
             Y ++NPPF      DK   E     G L    PG+       S+ + L++ +    L 
Sbjct: 278 CDYVMANPPFNV----DKVKAESASAAGRLPFGLPGVNAKTKEISNANYLWISYFYAYL- 332

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GRA  V++SS      + + + +IR  L+    ++ +V++  + F+  ++   L
Sbjct: 333 ---NDHGRAGFVMASSA---TDSANKDRDIREKLVLTGDVDVMVSVGNNFFYTLSLPCSL 386

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W     K  E + +V  I+A + +T +     +         + I+ +Y   ++   + +
Sbjct: 387 WFFDKAKRLENKNRVLFIDARNYYTVVDRTLNEWSEWQLKNLQAIVHLYRGEQDKYKALI 446

Query: 468 LDY 470
            +Y
Sbjct: 447 NEY 449


>gi|218708016|ref|YP_002415535.1| DNA methylase M [Escherichia coli UMN026]
 gi|293403007|ref|ZP_06647104.1| DNA methylase M [Escherichia coli FVEC1412]
 gi|298378534|ref|ZP_06988418.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           FVEC1302]
 gi|300899293|ref|ZP_07117559.1| N-6 DNA Methylase [Escherichia coli MS 198-1]
 gi|301646865|ref|ZP_07246711.1| N-6 DNA Methylase [Escherichia coli MS 146-1]
 gi|218435113|emb|CAR16069.1| DNA methylase M [Escherichia coli UMN026]
 gi|291429922|gb|EFF02936.1| DNA methylase M [Escherichia coli FVEC1412]
 gi|298280868|gb|EFI22369.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           FVEC1302]
 gi|300357072|gb|EFJ72942.1| N-6 DNA Methylase [Escherichia coli MS 198-1]
 gi|301074918|gb|EFK89724.1| N-6 DNA Methylase [Escherichia coli MS 146-1]
          Length = 529

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 186/549 (33%), Gaps = 92/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG  + +                      F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGEDDKK-----------------LVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   +  +  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    +Y         R  G+
Sbjct: 361 TVANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479

Query: 517 DILKPMMQQ 525
                +  +
Sbjct: 480 PEPDVLAAE 488


>gi|24375749|ref|NP_719792.1| type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
 gi|24350692|gb|AAN57236.1|AE015859_5 type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
          Length = 537

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 111/588 (18%), Positives = 203/588 (34%), Gaps = 94/588 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAFG 63
           T S + +   +W   + L       ++   +    LL  ++   E T + +  K+ L  G
Sbjct: 4   TSSNSDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGLLNKHTLPTG 61

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLST----LGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               DL     +     Y     +LST     G+T   + L   I               
Sbjct: 62  CRWTDLNDKDGLNLLDDYKRILLTLSTGKDSEGNTLHADPLILAI--------------- 106

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++    RL +   L ++ K+   I+    +     + ++YE L+ +  +E   GA  + T
Sbjct: 107 YADAQTRLREPRHLKQLIKSLDSIDWF--SAQKDGLGDLYEGLLEKNANETKSGAGQYFT 164

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------S 232
           PR ++     ++          +P     + DP  GT GFL  A   + +          
Sbjct: 165 PRALIDSMVRVI----------NPQAGEVIQDPAAGTAGFLIAAHEFIKNADNYDDLTLK 214

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +        G EL P T  + +   L+  +E D        +  G++L +   +  + 
Sbjct: 215 EIEHLRNKAFIGVELVPSTRRLALMNCLLHGMEGDDE----GVVHLGNSLGQVGMSLPKA 270

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG     D      +                S+  + FL H+   L+     
Sbjct: 271 DIILANPPFGTSKGGDASITRDDL-----------TYPTSNKQLAFLQHIYRNLKP---- 315

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRAA+VL  + LF    G   +++RR L+    +  I+ LPT +F+   + T +   + 
Sbjct: 316 GGRAAVVLPDNVLFEAGVG---TDVRRDLMYKCNLHTILRLPTGIFYAAGVKTNVLFFTK 372

Query: 413 RKTEER---RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY------------- 456
               ++             DL T++ N G KR    +        +Y             
Sbjct: 373 GSEADKLQEENCTTNTWVYDLRTNMPNFG-KRTPFGEQHLTPFEAVYDPSSHSREGGNPD 431

Query: 457 -VSRENGKFS---RMLDYRTFGYRRI-------KVLRPLRMSFILDKTGLARLEADITWR 505
             +R+ G++S     ++  T    +           R     FI D  G +    DI+W 
Sbjct: 432 LSARKEGEWSFNAEAVEIETTEVNQGIDERLAKSRWRVFSREFIRDTKGDS---LDISWL 488

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
           K S    +  L   + +  +            E++  +    LK +  
Sbjct: 489 KDSNSVDAADLGTPEELAGEAMTELKGALADLEALMKSLGAELKTEVK 536


>gi|254414884|ref|ZP_05028648.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196178373|gb|EDX73373.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 484

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/535 (18%), Positives = 180/535 (33%), Gaps = 93/535 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVIL---PFTLLRRLECALEPTRSAVREKYL 60
            + +   +   +W     L  D     + + ++       L+         +    E+ L
Sbjct: 1   MSTATHDIVAKLWNLCNILKDDGVT--YHQYVIELTYLLFLKM-------AKETSTERQL 51

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    DLE   +     +                   L SY+ S             F
Sbjct: 52  PEGYRWDDLEGQTEKPLEFYKG-----------------LLSYLGSHGSTLVKEI----F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +   + ++K   L  +      ++ +  +     + +IYE L+ +  +E   GA  + TP
Sbjct: 91  TDAHSSIKKDTTLSTLVTKIDKLDWY--SAKREGLGDIYEGLLEKNANEKKAGAGQYFTP 148

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSH 233
           R ++     ++           P +   + DP  GTGGFL  A  ++ +           
Sbjct: 149 RPLIDSMVRVM----------RPTLDDIIQDPAAGTGGFLIAANRYIREHSNPNSWTNKQ 198

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +        +G E   +TH + +  +++  L+S P+      IQ G TLS D        
Sbjct: 199 NNKYHGNTFYGMEHVQDTHRLALMNLILHGLDSAPQG---AGIQYGDTLSPDGQALPPAT 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG K            K G L          S+    FL H+   L+     G
Sbjct: 256 LILTNPPFGSK------------KGGGLPNRSDFEFPTSNKQFCFLQHIYLGLKP----G 299

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA V   + LF    G    +IR  L++   +  I+ LP+ +F+   + T +   +  
Sbjct: 300 GRAAAVFPDNVLFESNVG---RQIRTALMDKCNLHTILRLPSGIFYAQGVKTNVLFFTRG 356

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------------- 459
           K  ++ G  + +   DL T+    G+ R  +  +   +    +                 
Sbjct: 357 K--KQTGNTKEVWVYDLRTNTPQFGR-RTSLRREYFAEFEAFFGDDPLGGSPSLAQRTDT 413

Query: 460 -ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            E G+F R         R   +          ++ G     A +    +S L  +
Sbjct: 414 GEEGRF-RRFSRDWIAERDDNLDISWLKDEREEENGELPEPAILAQEAISELEAA 467


>gi|313892755|ref|ZP_07826336.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442686|gb|EFR61097.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 332

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/330 (29%), Positives = 152/330 (46%), Gaps = 31/330 (9%)

Query: 5   TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                S+ +FIW  A+D L   +    +  VILP T++RRL+  LE T+  V E      
Sbjct: 3   NQVYNSIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEHTKPVVLEMKKKMD 62

Query: 64  GSN--IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFED 117
            +       +    AG +F N S + L  L         + + E+Y+  FS N + I   
Sbjct: 63  EAGITNQWPALCNAAGQAFCNASPFVLKDLTSRVKKQTLKADFEAYLDGFSPNVQEILAK 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV--------------PDRVMSNIYEH 161
           F F + I  + +A +L  + + F    I L P  +               +  M  ++E 
Sbjct: 123 FQFRNQIDTMIEADILGAVIEKFVSPTINLSPKPIYTDDSKNVIKLPALDNHAMGTVFEE 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+R+F    +E A +  TPRDVV L   L+  P     K++     + YD  CGTGG LT
Sbjct: 183 LVRKFNEANNEEAGEHWTPRDVVDLMADLIFIPIADEIKDATY---SCYDGACGTGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A + +            +   GQE++PET+A+C A ML++        D +++I  GST
Sbjct: 240 VAQDRLTSLAKRRSKEVSIHLFGQEVQPETYAICKADMLLKG-----DGDQAEHIAYGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
           LS D    ++F + L+NPP+GK W+ D + 
Sbjct: 295 LSADGNASRQFDFMLANPPYGKSWKTDAEK 324


>gi|229542894|ref|ZP_04431954.1| N-6 DNA methylase [Bacillus coagulans 36D1]
 gi|229327314|gb|EEN92989.1| N-6 DNA methylase [Bacillus coagulans 36D1]
          Length = 476

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/494 (20%), Positives = 178/494 (36%), Gaps = 83/494 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVIL---PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        + + +        L+ +       +    E  +  G
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYVTELTYLLFLKMM-------KEQETESAIPEG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL +       +FY                 +L  Y+ S  +          +S  
Sbjct: 53  YRWDDLVAKEGTELKTFY----------------QHLLLYLGSSGNEMLRHI----YSDA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              + +   L KI K+   ++ +  +  +  + N+YE L+ +  SE   GA  + TPR +
Sbjct: 93  ATSISEPKNLEKIIKSIDALDWY--SAKEEGLGNLYEGLLEKNASEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           + +   L+           P +     DP  GT GF+  A  ++      +        +
Sbjct: 151 IDVMVQLV----------DPKIGERCADPAAGTFGFMIAADRYLKQQTDDYFDLDPQMAE 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + +   L+  +E          I+ G +LS +    K     
Sbjct: 201 FQRKEAFSGMELVKDTHRLALMNALLHSMEG--------RIEHGDSLSNNGKWMKNLDVI 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE           S+  + FL  + N L+   +G  R
Sbjct: 253 LTNPPFGTK------------KGGERVSRDDLTFDTSNKQLNFLQLIYNALK--DDGKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G+   +IRR L+    +  I+ LPT +F+   + T +   +  KT
Sbjct: 299 AAVVLPDNVLFESGVGA---QIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKT 355

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +  R   + +   DL T++ + G KR  +        +  Y   E    S++ D R   +
Sbjct: 356 D--RDNTKEVWVYDLRTNMPSFG-KRNQLTMAHFENFMKAY---EAEDRSKVEDERWNVF 409

Query: 476 RRIKVLRPLRMSFI 489
            R ++ +      I
Sbjct: 410 TREEIAKKDDSLDI 423


>gi|16132170|ref|NP_418769.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655]
 gi|89111058|ref|AP_004838.1| DNA methylase M [Escherichia coli str. K-12 substr. W3110]
 gi|238903437|ref|YP_002929233.1| DNA methylase M [Escherichia coli BW2952]
 gi|331650830|ref|ZP_08351858.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia
           coli M718]
 gi|135200|sp|P08957|T1MK_ECOLI RecName: Full=Type I restriction enzyme EcoKI M protein;
           Short=M.EcoKI
 gi|322812245|pdb|2Y7C|B Chain B, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812246|pdb|2Y7C|C Chain C, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812250|pdb|2Y7H|B Chain B, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812251|pdb|2Y7H|C Chain C, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|41753|emb|CAA29792.1| unnamed protein product [Escherichia coli K-12]
 gi|537191|gb|AAA97246.1| CG Site No. 621; alternate gene names hs, hsm, hsp, rm [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1790808|gb|AAC77305.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655]
 gi|85677089|dbj|BAE78339.1| DNA methylase M [Escherichia coli str. K12 substr. W3110]
 gi|238860824|gb|ACR62822.1| DNA methylase M [Escherichia coli BW2952]
 gi|260450838|gb|ACX41260.1| N-6 DNA methylase [Escherichia coli DH1]
 gi|315138904|dbj|BAJ46063.1| DNA methylase M [Escherichia coli DH1]
 gi|331051284|gb|EGI23333.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia
           coli M718]
          Length = 529

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 186/549 (33%), Gaps = 92/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG  + +                      F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGEDDKK-----------------LVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   +  +  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    +Y         R  G+
Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479

Query: 517 DILKPMMQQ 525
                +  +
Sbjct: 480 PEPDVLAAE 488


>gi|254414483|ref|ZP_05028249.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178713|gb|EDX73711.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 396

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 28/257 (10%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            ++DP CG GG    +   +A   +H      +  +GQE    T+ +C   + IR ++  
Sbjct: 8   RVFDPCCGLGGMFVQSEKFIA---AHQGRIDDISIYGQESNETTYKLCRMNLAIRWIDGS 64

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +   +      +   D     +  + ++NPPF       +   +        GR+  G
Sbjct: 65  NIKWNPEG-----SFLNDAHKDLKADFVIANPPFNDSDWGGELLRKD-------GRWRYG 112

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P + + +  ++ H    L       G A  VLS+  L       GE EIR+ L+E DL+
Sbjct: 113 VPPVGNANFAWVQHFLYHL----APTGAAGFVLSNGSL--SLNTGGEGEIRQALVEADLV 166

Query: 388 EAIVALPTDLFFRTNIATYLWILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + IV LPT LF+ T I   LW LS      K   R+G+V  I+A++L   +    ++ R 
Sbjct: 167 DCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRNRQGEVLFIDASELGYMV---NRRNRA 223

Query: 444 INDDQRRQILDIYVSRE 460
             ++   +I   Y + +
Sbjct: 224 FTEEDIGKIAGTYHTWK 240


>gi|302336438|ref|YP_003801645.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella
           uli DSM 7084]
 gi|301320278|gb|ADK68765.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella
           uli DSM 7084]
          Length = 494

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/509 (21%), Positives = 188/509 (36%), Gaps = 66/509 (12%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S +++   +W  A  L  D   ++D+ + +     L+  +   E ++   +      G  
Sbjct: 3   SQSTINQKVWSMATVLMNDGVSNSDYLEQLTYLLFLKMAD---EYSKPPYKRDMRIPGDC 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D        G   +   EY L TLG T                     +    S    
Sbjct: 60  TWDT--LKSKRGDELFRHYEYVLKTLGETG-----------------GTLQQIY-SGAQN 99

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++    +L ++       +    ++   V  +IYE L+++   +   GA  + TPR ++ 
Sbjct: 100 KISNPAILSRVITMIDAEKWS--SMSSDVKGDIYEGLLQKVAEDTKSGAGQYFTPRALIS 157

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------SHHKIPPI 239
                +           P   +T+ DP CG+GGFL  A +++ D                
Sbjct: 158 AMVDCV----------QPQPGKTVVDPCCGSGGFLLAAKDYIEDSEHYTLDRDQRHFLRY 207

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G E+ P T+ +C+  + +  +      +    I +  +L  D   G R+ Y L+NP
Sbjct: 208 STFAGWEIVPSTYKLCLMNLFLHNISD---FNGEPPIYRNDSLLAD--PGTRYDYVLTNP 262

Query: 300 PFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PFGKK  +    D   +E + G   R        S+  + F+ H+   L       G AA
Sbjct: 263 PFGKKSSYSFTNDEGLQEEEEGTYNRRDF-WAVTSNKQLNFVQHIHTILRQ----DGHAA 317

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G AG     +RR LLE   +  I+ LPT +F+   +   +    NR    
Sbjct: 318 VVVPDNVLFEGGAGE---TVRRKLLETTNLHTILRLPTGIFYAQGVKANVIFFDNR-PAS 373

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
              + + +   D  T + +   K+R +  +  +  +D Y     G             R 
Sbjct: 374 PDWQTREVWIYDYRTGVHHTL-KQRPMTREHLQDFVDCYKPAAIGDREETYSEENPNGRW 432

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
               R   +  ILD+    +   DITW K
Sbjct: 433 ----RRFTLQEILDR---DKASLDITWIK 454


>gi|294793237|ref|ZP_06758383.1| putative modification enzyme transmembrane protein [Veillonella sp.
           6_1_27]
 gi|294456182|gb|EFG24546.1| putative modification enzyme transmembrane protein [Veillonella sp.
           6_1_27]
          Length = 616

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 195/556 (35%), Gaps = 58/556 (10%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L N +W+ A+ L          +   +L    LR      +     + +      G
Sbjct: 3   NIRKLENELWEAADALRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLIEVEILKDRPMRNG 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLESYIASFSDNAKAI 114
             + +E+    A  + Y   E     L +          T+    + + +    +NA A+
Sbjct: 63  RVMPVEASDFKAKSALYLPLEAQYDYLLNLPEDIKGAALTSKDGQVMTSLGEVVNNAMAL 122

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGI-----ELHPDTVPDRVMSNIYEHLIRRFGSE 169
            E  + SS +  +          +  + I         D V   ++  IYE+ + +F   
Sbjct: 123 IE--EQSSQLTGILPKNYTDFSDELLAEILRIFNNSALDEVGGDIIGRIYEYFLNKFAKN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     F TP+ +V +   +L                TL+DP CG+GG    + + V  
Sbjct: 181 IASDDGVFFTPKSLVKMIVNVLEP-----------THGTLFDPACGSGGMFIQSGDFVNS 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      +  +GQE       +C+  M +  L       + K+  +G++   D    
Sbjct: 230 HGLNANT--TMTFYGQEKVEYNAQLCLMNMAVHGLTG-----VIKSGDEGNSFYNDAHQL 282

Query: 290 K-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANK 345
           + R  Y ++NPPF      DK   E     G L    PG+ K   I + + L++ +  + 
Sbjct: 283 EGRCDYIMANPPFNV----DKVKSESTQAAGRLPFGMPGVNKNKEIGNANYLWISYFYSY 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GRA  V++SS      +   +  IR  L++   ++ +V++  + F+  ++  
Sbjct: 339 L----NDTGRAGFVMASSA---TDSQGKDKNIRESLVKTGAVDVMVSVGNNFFYTKSLPC 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN---- 461
            LW     K +    KV  I+A + +T +     +           I+ +Y         
Sbjct: 392 SLWFFDRAKPDAIEDKVLFIDARNYYTVVDRTLNEWTEWQLKNLNAIVWLYRGEVEKYTA 451

Query: 462 --GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              ++ + L       + I+VL     +   +             RK+   +      + 
Sbjct: 452 LLNEYRKTLGEDKTFSQHIEVLSEQVKAIETEGKQAVADAGRGKGRKVQKEYDEKVEAVK 511

Query: 520 KPMMQQIYPYGWAESF 535
           + +          E F
Sbjct: 512 ETLTIAQEAQWLYEKF 527


>gi|295107442|emb|CBL04985.1| Type I restriction-modification system methyltransferase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 493

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/548 (21%), Positives = 214/548 (39%), Gaps = 65/548 (11%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           SA+++   IW  A  L+ D   ++D+ + +     L+  +   +P  +            
Sbjct: 2   SASTINQKIWNMATVLYNDGVSNSDYLEQLTYLLFLKMADEYSKPPYNR-----PTGLPE 56

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +   E     +G   ++T +  L  LG+                    + ++  F+    
Sbjct: 57  DCRWECLAGKSGAELFDTYKKMLDKLGAQG-----------------GMLQEI-FAGAQN 98

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++    +L ++ +           +   V  +IYE L++R   +   GA  + TPR +++
Sbjct: 99  KMSSPAILARVIQMIGTETWT--AMSQDVKGDIYEGLLQRIAEDTKSGAGQYFTPRPLIN 156

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILV 241
                +           P   +T+ DP CG+GGFL  A +++ +         K      
Sbjct: 157 TIIKCV----------QPKPEKTVCDPCCGSGGFLLAAKSYIEEAYQLDADQKKFLKNEA 206

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HG E+ P T  +C+  + +  +      D+    +  + LS     G RF Y L+NPPF
Sbjct: 207 FHGWEIVPATRRLCLMNLFLHNIGD--FNDVPPITRNDALLSDP---GMRFDYVLTNPPF 261

Query: 302 GKKWE-KDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIV 359
           GKK   K     + E  + EL          S +  + F+ H+   L+     GG AA+V
Sbjct: 262 GKKATLKAAAGEDGELVDEELSYSRQDFWATSSNKQLNFVQHIHTILKT----GGTAAVV 317

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +  + LF G AG     +RR LLE   +  I+ LPT +F++  +   +    NR   ER 
Sbjct: 318 VPDNVLFEGGAGE---TVRRKLLETANLHTILRLPTGIFYKPGVKANVIFFENRPGSERV 374

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
            + + +   D  T++ +  K+   + +      LD Y   + G     +D R   Y    
Sbjct: 375 -QTREVWIYDYRTNVHHTLKQHP-MTETDLTDFLDCY---KPGH----IDERDETYSEDN 425

Query: 480 VLRPLRMSFILDKT-GLARLEADITWRKL-SPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
                   F +D+  G  +L  DITW K    + +    D+L  + ++      A   ++
Sbjct: 426 NPDGRWRRFTIDEIMGRDKLSLDITWIKTGEDISEIALSDLLASIHEKSDAIADAVEQLE 485

Query: 538 ESIKSNEA 545
             +   E 
Sbjct: 486 ALLGDIED 493


>gi|218550388|ref|YP_002384179.1| DNA methylase M [Escherichia fergusonii ATCC 35469]
 gi|218357929|emb|CAQ90573.1| DNA methylase M [Escherichia fergusonii ATCC 35469]
          Length = 529

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/585 (18%), Positives = 202/585 (34%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG  + +                      F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGEDDKK-----------------LVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   +  +  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    +Y         R  G+
Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFEHVYGEDPHGLSPRTEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADNL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E   S+EA   +    ++F
Sbjct: 480 PEPDVLAAEAMGELVQALGELDALMRELGASDEADAQRQLLEEAF 524


>gi|149200913|ref|ZP_01877888.1| type I restriction-modification system DNA methylase [Roseovarius
           sp. TM1035]
 gi|149145246|gb|EDM33272.1| type I restriction-modification system DNA methylase [Roseovarius
           sp. TM1035]
          Length = 700

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 165/467 (35%), Gaps = 37/467 (7%)

Query: 10  SLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
                +WK A+DL  +      ++   I+    LR+         SA+     A    + 
Sbjct: 11  QFGADLWKMADDLRANSGLASNEYFMPIMGLLFLRQATNRYYAALSAIEADKAAGKMPDR 70

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIA 125
            L         +           +        L + + +  +  +  F            
Sbjct: 71  PLVDADFRRRRAMLLPEAARYDVILDMPKGGQLGAALTAAMEEVEKHFPPLAGQLPKDYE 130

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R +   LL  + + F    L        V   IYE+ +  F  + +    +F TP  +V 
Sbjct: 131 RFDD-DLLESMMRKFDTEALR--NASGDVFGRIYEYFLAEFSKQGAHDNGEFFTPPSIVQ 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
                +++PD  +          ++DP CG+GG    + + + D G        +  +G 
Sbjct: 188 TIVN-VIEPDHGI----------VFDPACGSGGMFVQSSHFIEDAGQD--TMKRVTFYGH 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKK 304
           E    T  +    + +  L+   R           T  KD      +  + ++NPPF   
Sbjct: 235 EKNETTAKLAQINLAVHGLQGTIRAGNDAI-----TYYKDPHELVGKCDFVMANPPFNVD 289

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            E D D V+ + +            K+S+ + L++ +  + L    N  GRA +V+SS  
Sbjct: 290 -EVDADKVKGDKRLPFGLPGVNKAKKVSNANYLWMSYFYSYL----NENGRAGVVMSSQA 344

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--ERRGKV 422
                AG  E+ +R+ L+E   ++ ++ +  + F+   +   LW     K    ER   V
Sbjct: 345 ---SSAGRDEAVVRQKLIETGAVDVMIDIRGNFFYTRTVPCQLWFFDRAKERDPERADHV 401

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            +++A + +  +                 I+ +Y   E  +F ++++
Sbjct: 402 LMLDARNNYRKVSRAIYDFAPEQQKNIAAIVWLYRG-EADRFLKLVE 447


>gi|17230180|ref|NP_486728.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
 gi|17131781|dbj|BAB74387.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
          Length = 657

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 115/561 (20%), Positives = 212/561 (37%), Gaps = 93/561 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F ++  +    F TP +V  + + ++          +    +T+YDPTCG+G  L  
Sbjct: 1   MRNFATQSGKSKGQFYTPAEVSRVISQVI------GVNSAQSQSQTIYDPTCGSGSLLLK 54

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + +              L  +GQE++  T A+    M++           +  I Q +TL
Sbjct: 55  SADEAE---------RGLTIYGQEMDNATRALARMNMILHG-------HPTAEIWQDNTL 98

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSM 336
           S   F       K F + ++NPPF  K   +   + K+    E  RF   G+P   +G  
Sbjct: 99  SSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKD----EFQRFDNYGIPPAKNGDY 154

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H+   L+      G+ AI+L    LF G A   E+EIR+ L+   +I+ I+ LP +
Sbjct: 155 AFLLHMVCSLK----SNGKGAIILPHGVLFRGNA---EAEIRKNLISKGIIKGIIGLPPN 207

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I   + +L     E R+G + +I+A+  +    N+ +    + +    +I+D++
Sbjct: 208 LFYGTGIPACIIVLDKEDAENRQG-IFMIDASKGFVKDGNKNR----LREQDIHKIVDVF 262

Query: 457 VSR-ENGKFSRMLDYRTFG--YRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQ 512
             + E  K+SRM+           + + R +      D   + A L   I  R +  L  
Sbjct: 263 NKQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQEEEDIQDIEAHLLGGIPKRDIEALSD 322

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK--SFIVAFINAFGRKDPR 570
            +   +   + Q+++       ++   I  +E K       +  S+       F     +
Sbjct: 323 YW--QVYPTLQQELFEAADRPGYLMLKIPGSEVKACIFAHPEFISYGKDIQAVFETWQGK 380

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYLES----------IQDY-------------FVREV 607
             P+       I   +  +       E           I  Y                +V
Sbjct: 381 HTPLLKA----IQPGDKPKAIIYALSEDLLQGFTGKSLIDKYDVYQHLMTYWVESMKDDV 436

Query: 608 SPHVPDAYIDKIF-IDEKDKEIGRVGYE-IN----FNRFFYQYQ-PSRKLQDIDAELKGV 660
              V D +  ++  +  K   +     E I      NR+F   Q     L+    E+   
Sbjct: 437 YILVEDGWKAELKAVTNKKGVVTDYVCELIPKELMINRYFQTEQAAIATLETKKDEIVRQ 496

Query: 661 EAQIA-------TLLEEMATE 674
           + ++         LLEE+  +
Sbjct: 497 QEELQEEHGGDDGLLEEVTND 517


>gi|160934947|ref|ZP_02082333.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753]
 gi|156866400|gb|EDO59772.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753]
          Length = 507

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/516 (19%), Positives = 181/516 (35%), Gaps = 70/516 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPT---------RSA 54
           S   +   +W     L        + + +        L+ L+   E              
Sbjct: 2   STIDIVQKLWNLCNVLRD--DGITYHQYVTELTYILFLKMLDETGEENTLKADVLKAYQK 59

Query: 55  VREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             E+Y    G  ++   E   +      YN S   L+TL     +N     ++       
Sbjct: 60  SLEQYARKKGKAVEQLTEEEKESRKPLLYNYSWEYLTTLEGIELKNYYMKLLSELGSTGI 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               D   +  ++ +E+   L KI    + ++          + ++YE L+++   E   
Sbjct: 120 PKISDIY-TKAVSSIEEPKNLQKIISEINKLDWF--EAKQEGLGDLYEGLLQKNADEKKS 176

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--- 229
           GA  + TPR ++ + T L+          SP      +DP CGT GF+  A  H  +   
Sbjct: 177 GAGQYFTPRVLIDVMTNLI----------SPKFGEKCFDPACGTFGFMISAYQHTTNGVD 226

Query: 230 ---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                           +G EL  + H + +    +  +          +I    +LS   
Sbjct: 227 LYSLSDQEMAAFQDSFYGVELVHDAHRLALMNAYLHNV--------PAHIFCEDSLSPSA 278

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K F   L+NPPFG K            K GE         + S+  + FL  +   L
Sbjct: 279 KRLKGFDVILTNPPFGTK------------KGGERTSRDDISFQTSNKQLNFLQVIYRSL 326

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +   +G  R A+VL  + LF    G     +RR L++   +  I+ LPT +F+   + T 
Sbjct: 327 KA--DGNARCAVVLPDNVLFADGDG---VSVRRELMDFCNLHTILRLPTGIFYAQGVKTN 381

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----EN 461
           +   +  KTE  +   + +   DL T++ + G K   +  +     +  Y +      E+
Sbjct: 382 VLFFTRGKTE--KDNTKEVWFYDLRTNMPSFG-KTTPLKKEHFEGFVKAYTAEDRHAVED 438

Query: 462 GKFSRMLDYRTFGYRRIKVLRPL-RMSFILDKTGLA 496
            ++S +        +   +   L R   +LD   L 
Sbjct: 439 ERWS-VFTREQIAEKGDTLDLGLIRDDSVLDYNDLP 473


>gi|154500306|ref|ZP_02038344.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC
           29799]
 gi|150271038|gb|EDM98312.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC
           29799]
          Length = 622

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/574 (18%), Positives = 211/574 (36%), Gaps = 76/574 (13%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L   +W++A+ L          +   +L    LR      +   + + +     GG
Sbjct: 3   NIRKLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLVEAEILKDRPMRGG 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL----------GSTNTRNNLESYIASFSDNAKAI 114
             + +E+    +  + +   E   + L          G TN R  + + +    +NA  +
Sbjct: 63  RVLPVEASDFASRSALFLPREAQYAYLVELPENIPAAGLTNWRGEVMNSLGEVVNNAMEL 122

Query: 115 FE--DFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            E      S  + +   +    LL ++ + F+   L  D V   ++  IYE+ + +F   
Sbjct: 123 VEQQSEQLSGVLPKDYTMFSDELLAELLRIFNNSAL--DEVGGDIVGRIYEYFLNKFAKN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           +++    F TP+ +V +   +L      L            DP CG+GG      + V  
Sbjct: 181 IAQDDGVFFTPKSLVKMIVNVLEPTQGILL-----------DPACGSGGMFVQTGDFVEH 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE       +C+  + +  L       + K+  + +T   D    
Sbjct: 230 AGMLAN--NTMTFYGQEKVEYNAKLCLMNLAVHGLNG-----IVKSGDEANTFYHDAHNL 282

Query: 290 KRF-HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANK 345
           +    Y ++NPPF      DK   E     G L    P + K   I +G+ L++ +    
Sbjct: 283 EGCCDYVMANPPFNV----DKVKSESAQSAGRLPFGLPSVNKNKEIGNGNYLWISYFYAY 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GRA  V++SS      +   + +IR  L++   +  +V++  + F+  ++  
Sbjct: 339 L----NEQGRAGFVMASSA---TDSQGKDKDIREQLVKTGHVAVMVSVGNNFFYTKSLPC 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENG 462
            LW     K EE R KV  I+A + +T +    +     +D Q +    I+ +Y    + 
Sbjct: 392 SLWFFDKGKREELRDKVLFIDARNYYTVV---DRTLNEWSDWQLKNLNAIVWLYRGEVDK 448

Query: 463 KFSRMLDYRTFGYRRIK----------VLRPLRMSFILD--------KTGLARLEADITW 504
             + + +Y       +           V      S ++         +  LA+ + +   
Sbjct: 449 YQALVKEYDRALVHHVTLMHANELLPAVHERRNFSEVVTVFEEYRKQQQELAKFDLEKVV 508

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           RK     Q+ W + L  + + I     A    ++
Sbjct: 509 RKDKKKTQALWDEKLAVIDEAISTAKEAVWLTEK 542


>gi|72384681|gb|AAZ67632.1| DNA-methyltransferase putative [Haemophilus parasuis 29755]
          Length = 416

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 140/411 (34%), Gaps = 73/411 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +         L   +WK A+ L       ++  ++L    L+ +  +    +  ++++Y 
Sbjct: 38  LANQQAFLNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYT 97

Query: 61  A-----------------FGGSNIDLESFVKVAGYSFYNTSEYSLS----TLGSTNTRNN 99
                                 N +LE     A  + +   + +       +   N  + 
Sbjct: 98  DPTSDFYLDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDK 157

Query: 100 LESY-----IASFSDNAKAIFE--DFDFSSTIARLE----KAGLLYKICKNFSGIELHPD 148
           +        IA+  D+A    E  +    + I R+     +  +L  +   FS       
Sbjct: 158 IWDEKTFKGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVEESILLGLIDLFSDTNFTRP 217

Query: 149 TVPD--------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           T+           ++ ++YE+ + +F     +    + TP+ +V L   +L         
Sbjct: 218 TLDGKQISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKG---- 273

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                   +YDP  G+GGF       + +   H      +   GQE  P T  +    M 
Sbjct: 274 -------RIYDPAMGSGGFFVQTERFIRE---HQGNVSEVSIFGQEFNPTTWKLAAMNMA 323

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNG 319
           IR +E D             T S      K+  + ++NPPF  K W  +  A +      
Sbjct: 324 IRGIEFD------FGKGNADTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQD------ 371

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              R+  G+P   + +  +L H+   L    +  GR A++L++  + +   
Sbjct: 372 --PRWQYGIPPEGNANFAWLQHMIYHL----SPNGRMALLLANGSMSSNTN 416


>gi|317486936|ref|ZP_07945746.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316921811|gb|EFV43087.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 91/483 (18%), Positives = 173/483 (35%), Gaps = 81/483 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T +  L+ A E    A            
Sbjct: 2   TTQEIVAKLWNLCNVLRD--DGITYHQYVTELTYILFLKMAKETGTEA------------ 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIA 125
                       +   T  +      S     ++    +A  S+N      +      ++
Sbjct: 48  ------------AIPETCRWDALAAKSGIELKHVYKQVLAELSENGTGRVREIY-QGAVS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +++   L KI  + + ++ +  +  +  + N+YE L+ +  +E   GA  + TPR ++ 
Sbjct: 95  NIDEPKNLEKIISSINALDWY--SAQEEGLGNLYEGLLEKNANEKKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IP 237
           +   L+           P +     DP CGT GF+  A  ++ D    +           
Sbjct: 153 VMVRLM----------KPQVGELCNDPACGTFGFMIAADRYLKDQTDDYFDLDEDQAAFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + +   ++  +E +             TLS      K +   L+
Sbjct: 203 KQRAFTGCELVHDTHRLALMNAMLHGIEGEILL--------ADTLSTAGKAMKGYDLVLT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K            K GE           S+  + FL H+   L+     GGRAA
Sbjct: 255 NPPFGTK------------KGGERATRDDFAFATSNKQLNFLQHIYRSLKR----GGRAA 298

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF    G     IR  L++   +  ++ LPT +F+   + T +   +  +++ 
Sbjct: 299 VVLPDNVLFADGDG---GRIRADLMDKCTLHTVLRLPTGIFYAQGVKTNVLFFTRGQSD- 354

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            RG  + +   DL T++ + GK        ++    D   + E      + D R   + R
Sbjct: 355 -RGNTKEVWFYDLRTNMPSFGKT----TPLKKEHFADFEAAFEAEDRRAVRDERWSVFSR 409

Query: 478 IKV 480
            ++
Sbjct: 410 EEI 412


>gi|209526221|ref|ZP_03274751.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209493318|gb|EDZ93643.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 485

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 102/523 (19%), Positives = 180/523 (34%), Gaps = 86/523 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+    +   +   +W     L  D   + ++   +     L+ L           RE  
Sbjct: 1   MSTSNVTR-DIVAKLWNLCHILRDDGITYNEYVTELTYLLFLKML-------AETGREDC 52

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           L        L+S   +    FY         L   N +   +  I +             
Sbjct: 53  LPQEYRWSALDSREGLEQLEFY-----RQLLLDLGNQKKVADPVILAI------------ 95

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+    RL K   L  +      ++    +  +  + N+YE L+ +  +E   GA  + T
Sbjct: 96  FTDAQTRLRKPTNLKSLTDAIDRLDWF--SAREEGLGNLYEGLLEKNAAEKKSGAGQYFT 153

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++     L+           P     + DP  GTGGFL  A  +V +          
Sbjct: 154 PRPLIDCIVRLV----------QPQAGEVIQDPAAGTGGFLVAADQYVKNQTDDLYTLTQ 203

Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL P+TH +C+  +++  +ES         +  G +LS D  +  +
Sbjct: 204 EQGRFQRNEAYRGLELVPDTHRLCLMNLMLHGIES--------VVMCGDSLSPDGESLGK 255

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG K    +          E           S+  + F+ H+   L+    
Sbjct: 256 ADVILTNPPFGTKKGGGRPTRSDFSVTAE----------TSNKQLAFVEHIYRALKP--- 302

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF    G    ++R+ L++   +  I+ LPT +F+   + T +   +
Sbjct: 303 -GGRAAVVLPDNVLFEDNTG---RKLRQQLMDLCDLHTILRLPTGIFYAQGVKTNVLFFT 358

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----------E 460
             KT+  RG  + +   DL  ++ + G K R++      +    +              E
Sbjct: 359 RGKTD--RGNTKAVWVYDLRANMISFG-KTRLLTVADFAEFEAAFGDDPLGKAPRTDQGE 415

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            G+F R         R   +          D         +I 
Sbjct: 416 EGRF-RCFTREEIAARNDNLDISWLRDTSDDPEDDLTEPEEIA 457


>gi|205359887|ref|ZP_02833022.2| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342263|gb|EDZ29027.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 533

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 108/585 (18%), Positives = 204/585 (34%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 6   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 58  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADEKKLVQAVFQNVNTT-- 100

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  +   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 101 ---ITQPKQLTELVSSMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 157

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 158 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTHDLDDLDGDA 207

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     +  
Sbjct: 208 QDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAD 265

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 266 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----G 307

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 308 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 364

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    +   +    +Y         R  G+
Sbjct: 365 TVANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRTEGE 423

Query: 464 F------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +      S + D                  F  +    A+ ++ DI+W K      +  L
Sbjct: 424 WSFNAEESEVADSEENKNADQHQATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 483

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 484 PEPDVLAAEAMSELVQALGELDALMRELGAGDEADAQRQLLNEAF 528


>gi|225155294|ref|ZP_03723787.1| type I restriction modification system, methyltransferase subunit
           [Opitutaceae bacterium TAV2]
 gi|224803901|gb|EEG22131.1| type I restriction modification system, methyltransferase subunit
           [Opitutaceae bacterium TAV2]
          Length = 413

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 167/462 (36%), Gaps = 62/462 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           +A+SL + +W     L  D     +G  +        L+      E  +S       +  
Sbjct: 2   TASSLVSKLWNYCNILRDDGLS--YGDYVEQLTYLLFLKM-----EHEKSLPPYNKKSQI 54

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +     + VK+ G         +L+ LG           +               F   
Sbjct: 55  PAGFSWSALVKLDGDDLETHYRITLTELGK------CGGMLGLI------------FRKA 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L ++  +    E    ++   V  + YE L+ +  ++V  GA  + TPR +
Sbjct: 97  QNKIQDPAKLRRLIADLIDKE-TWTSLEADVKGDAYEGLLEKNAADVKGGAGQYFTPRAL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPP 238
           +     ++          +P   +T+ DP CGTGGFL  A +++A           +   
Sbjct: 156 IAAMVEVM----------APQPGQTICDPACGTGGFLLAAHDYLARPERKLDKEQKRFLK 205

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCL 296
               HG EL      +C   +++  +  D  + L    +       D  +GK   +   L
Sbjct: 206 NGTLHGVELVDSVTRLCAMNLMLHGIGGDSDKTLPVTTR-------DALSGKHGEYDIVL 258

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPFGKK        E E     L           S+  + FL H+ + L+      GR
Sbjct: 259 ANPPFGKKSSVTIVNEEGESAKESLVINRDDFWASTSNKQLNFLQHIFSILKQ----HGR 314

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF G AG     IRR LL+   +  ++ LPT +F+   +   +     +  
Sbjct: 315 AAVVLPDNVLFEGGAGE---TIRRQLLQQADVHTLLRLPTGIFYAQGVKANVLFFDKKPA 371

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            ++R   + +   DL T+      K   +        +  Y 
Sbjct: 372 NDKRPWTEKLWIYDLRTNQH-FTLKENPLKPADLTDFIACYG 412


>gi|261419106|ref|YP_003252788.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|261375563|gb|ACX78306.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
          Length = 493

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 171/494 (34%), Gaps = 83/494 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T L  L                      
Sbjct: 2   NNREIVQKLWNLCNVLRD--DGITYHQYVTELTYLLFL---------------------- 37

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +K  G  +     Y    L   +    +   +  + +       +      +  
Sbjct: 38  ----KMMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQIY-TDA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + + +   L KI +    ++ +     +  +  +YE L+ +  SE+  GA  + TPR +
Sbjct: 93  TSNIREPKNLEKIIRTIDALDWY--NAKEEGLGALYEGLLEKNASELKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           + +   L+           P      +DP  GT GF+  A  HV      +        +
Sbjct: 151 IDVIVELV----------DPKPGERCHDPAAGTFGFMIAASRHVRAKTDDYFDLSEEEIR 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + V   L+  +  D           G TLS      K +   
Sbjct: 201 FQKYKAFSGVELVRDTHRLAVMNALLHDVHGDILL--------GDTLSPLGEQLKGYDVI 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE           S+  + FL H+   L   PNG  R
Sbjct: 253 LTNPPFGTK------------KGGERATRTDFTFMTSNKQLNFLQHIYRALR--PNGKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +   +  +T
Sbjct: 299 AAVVVPDNVLFEGGVGA---DIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRGET 355

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +   G  + +   DL T++ + G KR  +  D     +  Y +       ++ D R   +
Sbjct: 356 D--TGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTA---EDRHQVDDERWNVF 409

Query: 476 RRIKVLRPLRMSFI 489
            R  + +      I
Sbjct: 410 TRDDIAKKGDSLDI 423


>gi|167991323|ref|ZP_02572422.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205330316|gb|EDZ17080.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261249610|emb|CBG27480.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996883|gb|ACY91768.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301161008|emb|CBW20545.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132867|gb|ADX20297.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991334|gb|AEF10317.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 529

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 203/583 (34%), Gaps = 93/583 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    +      +A+F   + S+T
Sbjct: 54  YRWDDLKSRIGQDQMQFY---------------RNLLVQLGSDEKKLVQAVFH--NVSTT 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I + ++   L                       ++YE L+++  +E   GA  + TPR +
Sbjct: 97  IEQPKQLTELVSYMDALDWYN-GNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           +     LL           P     + DP  GT GFL +A  +V           G    
Sbjct: 156 IKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H  
Sbjct: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAHIV 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +NPPFG     +                   +   S+  + F+ H+   L      GGR
Sbjct: 264 ATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----GGR 305

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +    
Sbjct: 306 AAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKF- 464
               + +     +   DL T++ + G KR    +   +    +Y         RE G++ 
Sbjct: 363 TNPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPREEGEWS 421

Query: 465 -----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL-- 516
                S + D         +        F  +    A+ ++ DI+W K      +  L  
Sbjct: 422 FNAEESEVADSEENKNTDQRQATSRWRKFSREWIRSAKSDSLDISWLKDKDSIDADSLPE 481

Query: 517 ---DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                 + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 482 PDVLAAEAMGELVQALGELDALMRELGAGDEADAQRQLLNEAF 524


>gi|88810391|ref|ZP_01125648.1| type I restriction-modification system specificity subunit
           [Nitrococcus mobilis Nb-231]
 gi|88792021|gb|EAR23131.1| type I restriction-modification system specificity subunit
           [Nitrococcus mobilis Nb-231]
          Length = 481

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 109/486 (22%), Positives = 174/486 (35%), Gaps = 75/486 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           S   L   +W  A  L        +G  I        L+      +  R  +  +  A  
Sbjct: 2   SNEQLVAKVWNYAHVLRDQGIS--YGDYIEQITYLLFLKM-----DQEREDLLGETSAI- 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                        G        ++L  LG  +        I +             F   
Sbjct: 54  PPLWSWAQLANKDGDELELQYRHTLEQLGRED------GLIGTI------------FRKA 95

Query: 124 IARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             +L     L ++          IEL  D     V   IYE L+ R  +EV  GA  + T
Sbjct: 96  QNKLSDPAKLKRVVSLIDKEGPWIELKVD-----VKGEIYEGLLERNAAEVKSGAGQYFT 150

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR V+      +           P +  T+ DP CGTGGFL  A +H+       +    
Sbjct: 151 PRPVIEAIVKCV----------DPKIGETVCDPACGTGGFLLAAYDHLKTQTQDREKLRA 200

Query: 240 L---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           L     HG ++  E   +C   + +  + +D        ++QG  L+ D   G+RF   L
Sbjct: 201 LRHTAFHGLDIVDEVVRLCAMNLYLHGIGNDSSP-----VEQGDALASDG--GERFKVVL 253

Query: 297 SNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +NPPFGKK       +  +V  E ++ E   F       ++    FL H+   LE     
Sbjct: 254 TNPPFGKKSSYKVVGEDGSVTTEREHYEREDFK---FTTTNKQFNFLQHIMTILEA---- 306

Query: 353 GGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GRA +VL  + LF  GRAG G   IR+ LL+      ++ LPT +++   +   +    
Sbjct: 307 NGRAGVVLPDNVLFEAGRAGEG---IRKRLLQGFNFHTLLRLPTGIWYSPGVKANVLFFD 363

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            R    R  + + +   D  T++    K +R + +      +  Y +R+  +  R   Y 
Sbjct: 364 KR-PASREVQTKALWVYDYRTNVHKTQKTKR-LTNADLEDFVRCYQARQETERFRRFTYE 421

Query: 472 TFGYRR 477
               R 
Sbjct: 422 ELAQRD 427


>gi|32476612|ref|NP_869606.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica
           SH 1]
 gi|32447158|emb|CAD76984.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica
           SH 1]
          Length = 507

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 164/467 (35%), Gaps = 82/467 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        +   +  L F   L+ +       +   +E  L  G
Sbjct: 2   NTNDIVGKLWSLCHVLRD--DGITYQDYVNELSFLLFLKMM-------QETGQESELPDG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DLES   V   +FY               R  L       S   +++F D + S  
Sbjct: 53  YRWSDLESKDGVEQLAFY---------------RAMLVHLGTEGSPRVQSVFADANTS-- 95

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L +   L K+ ++   ++ +     +  + ++YE L+ R  SE   GA  + TPR +
Sbjct: 96  ---LRQPKNLSKLVQDLDELDWY--VAREEGLGDMYEGLLERNASEKKSGAGQYFTPRPL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           +      +           P     + DP  GTGGFL  A  ++ +              
Sbjct: 151 IECMVNCM----------RPQPGEVIQDPAAGTGGFLIAAHQYICNQTDDLFDLDADEQV 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  H  EL P+TH + V   ++  +          ++  G ++             
Sbjct: 201 FQKQQAYHAVELVPDTHRLLVMNCMLHGVGG--------HLASGDSMGSIGQNLPNADVI 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            + G             +  + FL H+   L+     GGR
Sbjct: 253 LTNPPFGTK------------RGGGKPTRDDFTFVTGNKQLAFLQHIYRGLKP----GGR 296

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G   + IR  L++   +  I+ LPT +F+   + T +   +  KT
Sbjct: 297 AAVVLPDNVLFEEGVG---TRIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKT 353

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +   G  +     DL T++   G KR  +      +    Y  + +G
Sbjct: 354 D--TGNTKQTWVYDLRTNMPAFG-KRTPLTHGHFAEFEKCYGKKADG 397


>gi|150388683|ref|YP_001318732.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149948545|gb|ABR47073.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 472

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 92/472 (19%), Positives = 171/472 (36%), Gaps = 79/472 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T +  L          + ++    G   
Sbjct: 2   NNQEIVAKLWNLCNVLRD--DGITYHQYVTELTYILFL---------KMSKETGTDGQIP 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D    + +          Y+                +    +       +   S + + 
Sbjct: 51  EDYRWDILIKKQGVELKRYYN--------------ELLNHLGEECTGRIREIY-SGSRSN 95

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E+   L KI  +   ++ +  +  +  + N+YE L+ +  +E   GA  + TPR ++++
Sbjct: 96  IEEPKNLEKIITSIDALDWY--SAKEEGLGNLYEGLLEKNANEKKSGAGQYFTPRVLINI 153

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPP 238
            T L+          +P       DP CGT GF+  A  +V D             +   
Sbjct: 154 MTQLI----------APQAGEKCNDPACGTFGFMIAADRYVKDHTDDLFDLSLKEQEFQK 203

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   ++  +E               TLS      K F   L+N
Sbjct: 204 NKAFTGCELVHDTHRLALMNAMLHDIEGKIL--------YADTLSNLGKAMKDFDVVLTN 255

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE           S+  + FL H+   L+   NG  RAA+
Sbjct: 256 PPFGTK------------KGGERTTRDDLTYPSSNKQLNFLQHIYRSLK--TNGKSRAAV 301

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF    G+    IR  L++   +  ++ LPT +F+   + T +   +  KTE  
Sbjct: 302 VLPDNVLFADGDGAS---IRADLMDKCNLHTVLRLPTGIFYAQGVKTNVLFFTRGKTE-- 356

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----ENGKFS 465
           +   + +   DL T++++ G K + + ++     +  Y S      E+ +FS
Sbjct: 357 KNNTKEVWVYDLRTNMQSFG-KTKALKEEHFEDFIKAYTSEDRTKVEDERFS 407


>gi|266619617|ref|ZP_06112552.1| type I restriction-modification system, M subunit [Clostridium
           hathewayi DSM 13479]
 gi|288868819|gb|EFD01118.1| type I restriction-modification system, M subunit [Clostridium
           hathewayi DSM 13479]
          Length = 471

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 165/485 (34%), Gaps = 82/485 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   + + +W     L        + + +   T +  L                      
Sbjct: 2   NTQEIVSKLWNLCNVLRD--DGITYHQYVTELTYILFL---------------------- 37

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDNAKAIFEDFDFSST 123
                  K  G       EY    L S      R      +    +      ++      
Sbjct: 38  ----KMAKETGVEEQIPEEYRWDCLVSKSGMELRRYYRELLNYLGEECTGRIQEIY-QGA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI      ++ +  +  +  + N+YE L+ +  +E   GA  + TPR +
Sbjct: 93  ATNIDEPKNLEKIITAIDKLDWY--SAKEEGLGNLYEGLLEKNANEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + +   L+           P +     DP CGT GF+  A  +V +      I   L   
Sbjct: 151 IDVMVRLM----------KPQVGERCNDPACGTFGFMIAADKYVKEHNDFWGISADLAEF 200

Query: 244 -------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL  ETH + +   ++  +E               TLS      K +   L
Sbjct: 201 QHKEAFTGCELVHETHRLALMNAMLHDIEGQIML--------ADTLSNAGKQLKGYDLVL 252

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG              K GE       +   S+  + FL H+   L+  PNG  RA
Sbjct: 253 TNPPFGT------------EKGGERATRDDFVFSTSNKQLNFLQHIYRSLK--PNGKARA 298

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G     IR  L+E   +  ++ LPT +F+   + T +   +   T+
Sbjct: 299 AVVLPDNVLFADGDGE---RIRVDLMERCNLHTVLRLPTGIFYAQGVKTNVLFFTRGTTD 355

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
             +   + +   DL T++ + GK   +  +       D   + E      + D R   + 
Sbjct: 356 --KDNTKEVWFYDLRTNMPSLGKTNPLKTE----HFADFEKAYEADDRRAVNDERWSVFT 409

Query: 477 RIKVL 481
           R +++
Sbjct: 410 REEIV 414


>gi|153833416|ref|ZP_01986083.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01]
 gi|148870304|gb|EDL69234.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01]
          Length = 528

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/547 (19%), Positives = 190/547 (34%), Gaps = 93/547 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+  E       +      L   
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMCEE------TGQEGDLLPED 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-S 122
                L++ V    + FY               RN L    A      +AIF++ + + +
Sbjct: 54  FRWSKLKAKVGQDQHQFY---------------RNMLVQLGADEHAIVRAIFQNVNTTIT 98

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             A+L +        + F G              ++YE L+++  +E   GA  + TPR 
Sbjct: 99  QPAQLTELVANMDSLEWFDG----GQGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRS 154

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHH 234
           ++     ++           P     + DP  GT GFL +A  ++               
Sbjct: 155 LISTIIKVM----------QPQPREIIQDPAAGTAGFLIEADKYIKANTNDLEDLSDDDQ 204

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL PET  + +   L+  +E D   D    I+ G+TL        +   
Sbjct: 205 EFQMKKAFVGLELVPETRRLALMNCLLHDIEGD---DNEGAIRLGNTLGSAGENLPKADV 261

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG     +                   +    +  + F+ H+ + L      GG
Sbjct: 262 ILTNPPFGSAASTNITRT--------------FVHPTGNKQLCFMQHIYDAL----EPGG 303

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +       
Sbjct: 304 RAAVVIPDNVLFEGGKG---TDIRRDLMDKCNLHTILRLPTGIFYAAGVKTNVLFFQKGT 360

Query: 415 TEE---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKF 464
            E     +G        D+ T++ N   KRR + +      ++ Y +       RE G +
Sbjct: 361 PENPQQDKGCTVDTWVFDMRTNM-NTFGKRRPLTEKHFDAFVNAYGADKNGQSVREEGVY 419

Query: 465 SRMLDYRTFGYRRIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
             +      G   +         R     +I D+ G +    DI+W K      +  L  
Sbjct: 420 ETLGSIFAEGEDSVTHTLENSRWRKFSREYIRDQKGDS---LDISWLKDLEATSAENLPA 476

Query: 519 LKPMMQQ 525
            + +  +
Sbjct: 477 PELLAGE 483


>gi|297530925|ref|YP_003672200.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
 gi|297254177|gb|ADI27623.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
          Length = 493

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 171/494 (34%), Gaps = 83/494 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T L  L                      
Sbjct: 2   NNREIVQKLWNLCNVLRD--DGITYHQYVTELTYLLFL---------------------- 37

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +K  G  +     Y    L   +    +   +  + +       +      +  
Sbjct: 38  ----KMMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQIY-TDA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + + +   L KI +    ++ +     +  +  +YE L+ +  SE+  GA  + TPR +
Sbjct: 93  TSNIREPKNLEKIIRTIDALDWY--NAKEEGLGALYEGLLEKNASELKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           + +   L+           P      +DP  GT GF+  A  HV      +        +
Sbjct: 151 IDVIVELV----------DPKPGERCHDPAAGTFGFMIAASRHVRAKTDDYFDLSEEEIR 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + V   L+  +  D           G TLS      K +   
Sbjct: 201 FQKYEAFSGVELVRDTHRLAVMNALLHDVHGDILL--------GDTLSPLGEQLKGYDVI 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE           S+  + FL H+   L   PNG  R
Sbjct: 253 LTNPPFGTK------------KGGERATRTDFTFMTSNKQLNFLQHIYRALR--PNGKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +   +  +T
Sbjct: 299 AAVVVPDNVLFEGGVGA---DIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRGET 355

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +   G  + +   DL T++ + G KR  +  D     +  Y +       ++ D R   +
Sbjct: 356 D--TGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTA---EDRHQVDDERWNVF 409

Query: 476 RRIKVLRPLRMSFI 489
            R  + +      I
Sbjct: 410 TRDDIAKKGDSLDI 423


>gi|320088960|emb|CBY98716.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 529

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 108/585 (18%), Positives = 204/585 (34%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADEKKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  +   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSSMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTHDLDDLDGDA 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     +  
Sbjct: 204 QDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAD 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    +   +    +Y         R  G+
Sbjct: 361 TVANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRTEGE 419

Query: 464 F------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +      S + D                  F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEESEVADSEENKNADQHQATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 480 PEPDVLAAEAMSELVQALGELDALMRELGAGDEADAQRQLLNEAF 524


>gi|332969661|gb|EGK08677.1| type I restriction-modification system DNA-methyltransferase
           [Desmospora sp. 8437]
          Length = 474

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 176/485 (36%), Gaps = 82/485 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        + + +        L+ ++   E   +++ E+Y    
Sbjct: 2   NTQEIVQKLWNLCNVLRD--DGITYHQYVTELTYILFLKMMKEREEE--ASIPEEYRW-- 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +    + G   +      L+ LG T  R+ L   I               + + 
Sbjct: 56  ------DRLTSLHGEELHQHYRRLLTDLG-TQGRDPLVQQI---------------YRNA 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI ++  G++ +  +  +  + N+YE L+ +  SE   GA  + TPR +
Sbjct: 94  STNIDEPKNLEKIIRSIDGLDWY--SAREEGLGNLYEGLLEKNASEKKSGAGQYFTPRPL 151

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------- 235
           +++   L+           P       DP  GT GF+  A +++ +    +         
Sbjct: 152 INVMVKLI----------DPRPGEKCNDPAAGTFGFMIAADHYLKEKYDEYYDLEPEERT 201

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  ETH + +    +  +E             G TLS            
Sbjct: 202 FQKYEAFTGCELVQETHRLALMNARLHGIEGKI--------HLGDTLSSLGKEMGDMDVI 253

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            + GE           ++  + FL H+   L+   NG  R
Sbjct: 254 LTNPPFGTK------------RGGERPTRDDFTYPSTNKQLNFLQHIYRALKA--NGKAR 299

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G     IR  L++   +  I+ LPT +F+   + T +       T
Sbjct: 300 AAVVLPDNVLFQDGDG---KSIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFERGTT 356

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +   G  + +   DL T++ + G KR  + +      +  Y +      SR+ D R   +
Sbjct: 357 D--IGNTEEVWFYDLRTNMPSFG-KRNPLTEAHFDGFIQAYTA---SDRSRVQDERWSRF 410

Query: 476 RRIKV 480
            R ++
Sbjct: 411 TREEI 415


>gi|168243977|ref|ZP_02668909.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194450433|ref|YP_002048548.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194408737|gb|ACF68956.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205336978|gb|EDZ23742.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 529

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 201/583 (34%), Gaps = 93/583 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    +      +A+F   + S+T
Sbjct: 54  YRWDDLKSRIGQDQMQFY---------------RNLLVQLGSDEKKLVQAVFH--NVSTT 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I   ++   L                       ++YE L+++  +E   GA  + TPR +
Sbjct: 97  IEHPKQLTELVSYMDALDWYN-GNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           +     LL           P     + DP  GT GFL +A  +V           G    
Sbjct: 156 IKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H  
Sbjct: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAHIV 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +NPPFG     +                   +   S+  + F+ H+   L      GGR
Sbjct: 264 ATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----GGR 305

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +    
Sbjct: 306 AAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKF- 464
               + +     +   DL T++ + G KR    +   +    +Y         RE G++ 
Sbjct: 363 TNPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPREEGEWS 421

Query: 465 -----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL-- 516
                S + D                  F  +    A+ ++ DI+W K      +  L  
Sbjct: 422 FNAEESEVADSEENKNTDQHQATSRWRKFSREWIRSAKSDSLDISWLKDKDSIDADSLPE 481

Query: 517 ---DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                 + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 482 PDVLAAEAMGELVQALGELDALMRELGAGDEADAQRQLLNEAF 524


>gi|167750092|ref|ZP_02422219.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702]
 gi|167656965|gb|EDS01095.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702]
          Length = 621

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/581 (16%), Positives = 211/581 (36%), Gaps = 58/581 (9%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L   +W++A+ L          +   +L    LR      +   + + +   + GG
Sbjct: 3   NIRKLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKKVEAEILKDRPSRGG 62

Query: 65  SNIDLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
             + +E+            K A Y +      +++  G  N   +  + +    +NA  +
Sbjct: 63  RVMPVEASDFSAKSALFLPKEAQYEYLVNLPENIAAAGLINKAGHPMNSLGEVVNNAMQL 122

Query: 115 FED--FDFSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            ED     +  + +        LL ++ + F+   L  D V   ++  IYE+ + +F   
Sbjct: 123 IEDQSEQLTGVLPKSYTDFTDELLAELLRIFNNSAL--DDVGGDIIGRIYEYFLNKFAKN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           ++     F TP+ +V +   ++      L            D  CG+GG    + + V  
Sbjct: 181 IASDDGVFFTPKSLVKMIVNIIEPKQGVLL-----------DCACGSGGMFVQSGDFVNA 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +      +  +GQE       +C+  M +  L    +     N       + +    
Sbjct: 230 AGMNAN--STMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEANTFYHDAHNLNG--- 284

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKL 346
               Y ++NPPF      DK   E     G L    P + K   + + + L++ +  + L
Sbjct: 285 -CCDYIMANPPFNV----DKVKAESCESAGRLPFGLPSVNKNKEVGNANYLWISYFYSYL 339

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  GRA  V++SS      +   + +IR  L+    ++ ++++  + F+  ++   
Sbjct: 340 ----NEHGRAGFVMASSA---TDSQGKDKDIREKLIGTGHVDVMISVGNNFFYTKSLPCS 392

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           LW     K E  R KV  I+A + +T +     +           I+ +Y   E  K++ 
Sbjct: 393 LWFFDKAKGEAIRDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYRG-ETDKYTA 451

Query: 467 ML-DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI----LKP 521
           +L +Y  + +   +      +   + +     + + +   KLS L ++   ++     + 
Sbjct: 452 LLQEYHHYLHDEAEAAENDDLKEAVYQESFVDIVSALK-EKLSALRKTAKAEVEAAGKRD 510

Query: 522 MMQQIYPYGWAESFVKESIK-SNEAKTLKVKASKSFIVAFI 561
                  Y    ++++  +  + EA  L  K         +
Sbjct: 511 KKSVQQQYDDRIAYIENMLNVAKEAHWLYEKFGDGVYTDVL 551


>gi|218709368|ref|YP_002416989.1| type I restriction enzyme EcoKI M subunit [Vibrio splendidus LGP32]
 gi|218322387|emb|CAV18540.1| Type I restriction enzyme EcoKI, M subunit [Vibrio splendidus
           LGP32]
          Length = 484

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/529 (19%), Positives = 194/529 (36%), Gaps = 95/529 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+  E       +   +  L  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMCEE------TGQEDDLLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL++ +    + FY               RN L    A      +AIF++ + +  
Sbjct: 54  YRWADLKAKLGQEQHQFY---------------RNMLVQLGADDHAIVRAIFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   +E              ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPAQLTELVDNMDKLEWFDGDTGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     ++           P     + DP  GT GFL +A  ++    +         
Sbjct: 154 SLISTIIKVM----------QPQPREVIQDPAAGTAGFLIEADKYIKSRTNDLDDLDDDD 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G EL PET  + +   L+  +E D        I+ G+TL     T  + +
Sbjct: 204 QEFQMTKAFVGLELVPETRRLALMNCLLHDIEGDAEEGA---IRLGNTLGSAGETLPQAN 260

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     +                   +    +  + F+ H+ + L      G
Sbjct: 261 VILTNPPFGSASSTNITRT--------------FVHPTGNKQLCFMQHIYDAL----EPG 302

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +      
Sbjct: 303 GRAAVVIPDNVLFEGGKGA---DIRRDLMDKCNLHTILRLPTGIFYAAGVKTNVLFFQKG 359

Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-------SRENGK 463
             +   + +G  +     D+ T++ N   KRR + +      ++ Y        +RE G 
Sbjct: 360 TQQDPNQDKGCTKETWVFDMRTNM-NTFGKRRPLTEKHFDVFVNAYGSDTNGLSAREEGV 418

Query: 464 FSRMLDYRTFGYRRIK------VLRPLRMSFILDKTGLARLEADITWRK 506
           +  + +    G   ++        R     +I D+ G +    DI+W K
Sbjct: 419 YETLGNIFAEGDDSVENLIENARFRKFSRDYIRDQKGDS---LDISWLK 464


>gi|94265469|ref|ZP_01289219.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
 gi|93454011|gb|EAT04352.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
          Length = 480

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 172/487 (35%), Gaps = 79/487 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64
              L   +W  A  L        +G  I        L+      +  R  +  +  A   
Sbjct: 3   NEQLVAKVWNYAHVLRDQGVS--YGDYIEQITYLLFLKM-----DQERQELLGEASA--- 52

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSS 122
                               ++S   L + +       Y  +  + A+   +     F  
Sbjct: 53  -----------------IPPQWSWGQLANKDGDELELQYRHTLENLAREEGLIGTI-FRK 94

Query: 123 TIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +  +L     L ++          I L  D     V   IYE L+ R  SEV  GA  + 
Sbjct: 95  SQNKLSDPAKLKRVVSLIDTEGPWIGLGVD-----VKGEIYEGLLERNASEVKSGAGQYF 149

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR V+      +          +P +  ++ DP CGTGGFL  A +H+ +     +   
Sbjct: 150 TPRPVIETIVKCV----------NPQIGESVCDPACGTGGFLLAAYDHMKNQSQDRERLR 199

Query: 239 IL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            L      G ++  E   +C   + +  L +       ++   G         G RF+  
Sbjct: 200 ALRHTAFSGLDIVDEVVRLCAMNLYLHGLGNGGSPVEQRDALAGD-------NGHRFNVV 252

Query: 296 LSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           L+NPPFGKK       +  AV  E ++ E   F       S+    FL H+   LE    
Sbjct: 253 LTNPPFGKKSSYKVVGEDGAVTSEREHYEREDFK---FTTSNKQFNFLQHIMTILEA--- 306

Query: 352 GGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GRA +VL  + LF  GRAG G   IR+ LLE      ++ LPT +++   +   +   
Sbjct: 307 -HGRAGVVLPDNVLFEAGRAGEG---IRKRLLEGFNFHTLLRLPTGIWYSPGVKANVLFF 362

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             R    R  + + +   DL T+I    K +R +        +  Y  R+  +  R   Y
Sbjct: 363 DKR-PASREVQTRELWVYDLRTNIHKTLKTKR-LTHADFDDFIHCYHKRQETERFRRFSY 420

Query: 471 RTFGYRR 477
           +    R 
Sbjct: 421 QELAKRD 427


>gi|269797185|ref|YP_003311085.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
 gi|269093814|gb|ACZ23805.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
          Length = 616

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 104/564 (18%), Positives = 192/564 (34%), Gaps = 74/564 (13%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L N +W+ A+ L          +   +L    LR      +     + +      G
Sbjct: 3   NIRKLENELWEAADALRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLIEVEILKDRPMRNG 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS---------------------TNTRNNLESY 103
             + +E+    A  + Y   E     L +                         NN  + 
Sbjct: 63  RVMPVEASDFKAKSALYLPIEAQYDYLLNLPEDIKGAALTSKDGQVMTSLGEVVNNAMAL 122

Query: 104 IASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           I   S     I      DFS          LL +I + F+   L  D V   ++  IYE+
Sbjct: 123 IEEQSAQLTGILPKNYTDFSD--------ELLAEILRIFNNSAL--DEVGGDIIGRIYEY 172

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F   ++     F TP+ +V +   +L                TL+DP CG+GG   
Sbjct: 173 FLNKFAKNIASDDGVFFTPKSLVKMIVNVLEP-----------THGTLFDPACGSGGMFI 221

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            + + V   G        +  +GQE       +C+  M +  L       + K+  +G++
Sbjct: 222 QSGDFVNSHG--LNANSTMTFYGQEKVEYNAQLCLMNMAVHGLTG-----VIKSGDEGNS 274

Query: 282 LSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML 337
              D    + R  Y ++NPPF      DK   E     G L    PG+ K   I + + L
Sbjct: 275 FYNDAHQLEGRCDYIMANPPFNV----DKVKSESTQAAGRLPFGMPGVNKNKEIGNANYL 330

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ +  + L    N  GRA  V++SS      +   +  IR  L++   ++ +V++  + 
Sbjct: 331 WISYFYSYL----NDIGRAGFVMASSA---TDSQGKDKNIRESLVKTGAVDVMVSVGNNF 383

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+  ++   LW     K +    KV  I+A + +T +     +           I+ +Y 
Sbjct: 384 FYTKSLPCSLWFFDRAKPDAIEDKVLFIDARNYYTVVDRTLNEWTEWQLKNLNAIVWLYR 443

Query: 458 SREN------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                      ++ + L       + I+VL     +   +             RK+   +
Sbjct: 444 GEIEKYTALLNEYRKTLGEDKTFSQHIEVLSEQVKAIETEGKQAVADAGRGKGRKVQKEY 503

Query: 512 QSFWLDILKPMMQQIYPYGWAESF 535
                 + + +          E F
Sbjct: 504 DEKVEAVKETLTIAQEAQWLYEKF 527


>gi|240146118|ref|ZP_04744719.1| type I restriction-modification system, M subunit [Roseburia
           intestinalis L1-82]
 gi|257201771|gb|EEV00056.1| type I restriction-modification system, M subunit [Roseburia
           intestinalis L1-82]
          Length = 477

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/547 (19%), Positives = 194/547 (35%), Gaps = 89/547 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   + + +W     L        + + +        L+         +    E+ +   
Sbjct: 2   TTQEIVSKLWNLCNVLRD--DGITYHQYVTELTYILFLKM-------AKETGTEEQIPEK 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                L++   V    FYN                     ++   DN      +      
Sbjct: 53  YHWDKLKAKSGVELKKFYN-------------------ELLSELGDNGTGRIREIY-QGA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI      ++ +  +  +  + N+YE L+ +  +E   GA  + TPR +
Sbjct: 93  ATNIDEPKNLEKIIATIDSLDWY--SAREEGLGNLYEGLLEKNANEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---------H 234
           + + T L+           P +     DP CGT GF+  A  +VA+   +          
Sbjct: 151 IDVMTKLM----------KPQVGERCNDPACGTFGFMIAAHQYVAERTDNFFDIADADLA 200

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K        G EL  +TH + +   ++  + +            G TLS    +   +  
Sbjct: 201 KFEKEEAFTGCELVHDTHRLALMNAMLHDIAAPITL--------GDTLSNIGKSMHDYDL 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K            K GE           S+  + FL H+   L+   NG  
Sbjct: 253 VLTNPPFGTK------------KGGERATRDDFTYPTSNKQLNFLQHIYRSLK--NNGKA 298

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G    +IR  LL+   +  I+ LPT +F+   + T ++  +  K
Sbjct: 299 RAAVVLPDNVLFADGDGE---KIRLDLLDKCNLHTILRLPTGIFYAQGVKTNVFFFTRGK 355

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           T+  +G  + +   DL   + + G K   +  +     +  Y    +G  S+    R   
Sbjct: 356 TD--KGNTKEVWIYDLRNDMPSFG-KTNPLKPEHFDDFIACYA---DGDLSK----RKET 405

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL-DILKPMMQQIYPYGWAE 533
           Y         R   I D     +   DITW K      ++ L ++L  + ++      A 
Sbjct: 406 YSEENPNGRWRKFSIQDILARDKTSLDITWMKTESDTDNYTLAELLDQIKEKSQNIAKAV 465

Query: 534 SFVKESI 540
           S +++ I
Sbjct: 466 SELEQLI 472


>gi|16767769|ref|NP_463384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197262701|ref|ZP_03162775.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|730886|sp|P40813|T1M_SALTY RecName: Full=Type I restriction enzyme StySJI M protein;
           Short=M.StySJI
 gi|154130|gb|AAA19429.1| restriction-modification enzyme type I M subunit [Salmonella
           enterica]
 gi|16423092|gb|AAL23343.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197240956|gb|EDY23576.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|312915622|dbj|BAJ39596.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222501|gb|EFX47573.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 529

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 202/583 (34%), Gaps = 93/583 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    +      +A+F   + S+T
Sbjct: 54  YRWDDLKSRIGQDQMQFY---------------RNLLVQLGSDEKKLVQAVFH--NVSTT 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I + ++   L                       ++YE L+++  +E   GA  + TPR +
Sbjct: 97  IEQPKQLTELVSYMDALDWYN-GNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           +     LL           P     + DP  GT GFL +A  +V           G    
Sbjct: 156 IKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H  
Sbjct: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAHIV 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +NPPFG     +                   +   S+  + F+ H+   L      GGR
Sbjct: 264 ATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----GGR 305

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +    
Sbjct: 306 AAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKF- 464
               + +     +   DL T++ + G KR    +   +    +Y         RE G++ 
Sbjct: 363 TNPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPREEGEWS 421

Query: 465 -----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL-- 516
                S + D                  F  +    A+ ++ DI+W K      +  L  
Sbjct: 422 FNAEESEVADSEENKNTDQHQATSRWRKFSREWIRSAKSDSLDISWLKDKDSIDADSLPE 481

Query: 517 ---DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                 + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 482 PDVLAAEAMGELVQALGELDALMRELGAGDEADAQRQLLNEAF 524


>gi|291167082|gb|EFE29128.1| type I restriction-modification system, M subunit [Filifactor
           alocis ATCC 35896]
          Length = 503

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 187/491 (38%), Gaps = 66/491 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRR-----LECALEPT---RSAVR 56
              +   +W     L        + + +        L+      +E  +E        ++
Sbjct: 3   NQEIVQKLWNLCNVLRD--DGITYHQYVTELTYILFLKMMKEKDIEDTIEKNIVGYKDLK 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           +K      +  + + F++    + Y  S  +L +L     +   E  I  F ++ +   +
Sbjct: 61  KKNEDGTITKNEQQEFLEKKKVAEY--SWNTLVSLSGIELKKYYERIIHLFGEHCRGHIK 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                +    +E+   L KI +  + ++ +  ++ +    ++YE L+ +  +E   GA  
Sbjct: 119 SIY-HNARTNIEEPKNLEKIIRTMNNLDWY--SIDEEGFGDLYEGLLEKNANEKKSGAGQ 175

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           + TPR ++ + T L+           P +     DP CGT GF+  A  +V +       
Sbjct: 176 YFTPRVLIDVMTRLI----------QPKVGERCNDPACGTFGFMIAAKRYVNEHHDEFSL 225

Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               +         G EL  +TH + +   +I  +ES+             TLS    + 
Sbjct: 226 SKEEYDFQKEKAFTGCELVSDTHRLALMNAMIHGIESEIL--------CADTLSNIGKSM 277

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   L+NPPFG K            K GE           S+  + FL H+   L++ 
Sbjct: 278 SGYDVVLTNPPFGTK------------KGGERATRDDFTFPTSNKQLNFLQHIYRSLKV- 324

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +G  RAA+VL  + LF    G+   +IR  L++   +  I+ LPT +F+   + T +  
Sbjct: 325 -DGKARAAVVLPDNVLFADGDGA---KIREDLMDKCNLNMILRLPTGIFYAQGVKTNVLF 380

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            +    E  +   + +   D+ T++ + GK        ++   +D   +      +++ D
Sbjct: 381 FTRGTRE--KENTKEVWFYDMRTNMPSFGKT----TPLKKEHFVDFEKAYLAEDRTKIED 434

Query: 470 YRTFGYRRIKV 480
            R   + R ++
Sbjct: 435 ERLNVFTREEI 445


>gi|90410147|ref|ZP_01218164.1| DNA methylase M, host modification [Photobacterium profundum 3TCK]
 gi|90329500|gb|EAS45757.1| DNA methylase M, host modification [Photobacterium profundum 3TCK]
          Length = 549

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 104/543 (19%), Positives = 193/543 (35%), Gaps = 83/543 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+  E       +    + L  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMCEE------TGQESELLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL++ +    + FY               RN L           +AIF++ + +  
Sbjct: 54  LRWKDLKTKIGREQHQFY---------------RNMLVQLGDDSHAIVRAIFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   +               ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPAQLTELVSNMDSLGWFEGDKGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     L+           P     + DP  GT GFL +A  ++              
Sbjct: 154 SLISTIVKLM----------QPQPREVIQDPAAGTAGFLIEADRYIKSHTNDLDDLSEDD 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL PET  + +   L+  +E D  +D    I+ G+TL  D     + +
Sbjct: 204 QDFQMQRAFVGLELVPETRRLALMNCLLHDIEGD--QDKGGAIRLGNTLGSDGEALPKSN 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 VILTNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIVESL----EPG 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G+   +IRR L++   +  ++ LPT +F+   + T +      
Sbjct: 304 GRAAVVIPDNVLFEGGKGA---DIRRDLMDKCRLHTVLRLPTGIFYAAGVKTNVLFFQKG 360

Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR---M 467
             +  E+ +         D+ T++ N   KRR + D      +  Y   +NG+  R   +
Sbjct: 361 TVKNPEQDKKCTTETWVFDMRTNM-NTFGKRRPLTDKHFDAFIAAYGEDKNGQSPRSEGV 419

Query: 468 LDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            D     Y   +  V +  + +  +++    +   D    +        WL  L+    +
Sbjct: 420 WDVMGAIYAEGETSVEQTSQKAHKVEEARFRKFSRDYIRDQKGDSLDISWLKDLEATSTE 479

Query: 526 IYP 528
             P
Sbjct: 480 NLP 482


>gi|191639033|ref|YP_001988199.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|190713335|emb|CAQ67341.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|327383093|gb|AEA54569.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei LC2W]
 gi|327386277|gb|AEA57751.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei BD-II]
          Length = 329

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 139/355 (39%), Gaps = 43/355 (12%)

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             L T + +   + +         T+YDPT G+G  L +A  +  +  S       +   
Sbjct: 2   SRLITQIAMHGKEDVR------GFTIYDPTMGSGSLLLNARRYSNERLS-------INYF 48

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPF 301
           GQEL   T+ +    M++  +        ++++    TL +D    +   F   + NPP+
Sbjct: 49  GQELNTSTYNLARMNMILHGV-----PINNQHLHNADTLDQDWPIEEPTNFDAVVMNPPY 103

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
              W+  K             RF   GL   S     FL+H    L+      G   IVL
Sbjct: 104 SAHWQPSKGTEND-------PRFVSYGLAPKSKADFAFLLHGYYHLK----DTGVMCIVL 152

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G A   E  IR+ LLEN  I+ ++ LP ++FF T+I T + +L   +T     
Sbjct: 153 PHGVLFRGGA---EGRIRKALLENGAIDTVIGLPANIFFNTSIPTTVTVLKKSRTTR--- 206

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK 479
            V  I+A+  +   +N    +  + DD  ++IL+ Y++R++  K++ +  +         
Sbjct: 207 DVLFIDASKEFEKAKN----QNHLTDDNIQKILETYINRKDVDKYAHLASFDEIKENDFN 262

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           +  P  +     +  +  ++     +K          ++ K     +     A  
Sbjct: 263 LNIPRYVDTTEPEKPVDVVKVVADIKKNDEEIARLSSELAKNFDDLVANNDEAAK 317


>gi|94272596|ref|ZP_01292153.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
 gi|93450073|gb|EAT01432.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
          Length = 480

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 173/487 (35%), Gaps = 79/487 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64
              L   +W  A  L        +G  I        L+      +  R  + ++  A   
Sbjct: 3   NEQLVAKVWNYAHVLRDQGIS--YGDYIEQITYLLFLKM-----DQERQELLDEASA--- 52

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSS 122
                               ++S   L + +       Y  +  + A+   +     F  
Sbjct: 53  -----------------IPPQWSWGQLANKDGDELELQYRHTLENLAREEGLIGTI-FRK 94

Query: 123 TIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +  +L     L ++          I L  D     V   IYE L+ R  SEV  GA  + 
Sbjct: 95  SQNKLSDPAKLKRVVSLIDTEGPWIGLGVD-----VKGEIYEGLLERNASEVKSGAGQYF 149

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR V+      +          +P +  ++ DP CGTGGFL  A +H+ +     +   
Sbjct: 150 TPRPVIETIVKCV----------NPRIGESVCDPACGTGGFLLAAYDHMKNQSQDRERLR 199

Query: 239 IL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            L      G ++  E   +C   + +  L +       ++   G         G RF+  
Sbjct: 200 ALRHTAFSGLDIVDEVVRLCAMNLYLHGLGNGGSPVEQRDALAGD-------NGHRFNVV 252

Query: 296 LSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           L+NPPFGKK       +  AV  E ++ E   F       S+    FL H+   LE    
Sbjct: 253 LTNPPFGKKSSYKVVGEDGAVTSEREHYEREDFK---FTTSNKQFNFLQHIMTILEA--- 306

Query: 352 GGGRAAIVLSSSPLF-NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GRA +VL  + LF  GRAG G   IR+ LLE      ++ LPT +++   +   +   
Sbjct: 307 -HGRAGVVLPDNVLFEAGRAGEG---IRKRLLEGFNFHTLLRLPTGIWYSPGVKANVLFF 362

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             R    R  + + +   DL T+I    K +R +        +  Y  R+  +  R   Y
Sbjct: 363 DKR-PASREVQTRELWVYDLRTNIHKTLKTKR-LTHADFDDFIHCYHQRKETERFRRFSY 420

Query: 471 RTFGYRR 477
           +    R 
Sbjct: 421 QELAGRD 427


>gi|91213999|ref|YP_543985.1| DNA methylase M [Escherichia coli UTI89]
 gi|117626661|ref|YP_859984.1| DNA methylase M [Escherichia coli APEC O1]
 gi|91075573|gb|ABE10454.1| DNA methylase M [Escherichia coli UTI89]
 gi|115515785|gb|ABJ03860.1| DNA methylase M [Escherichia coli APEC O1]
 gi|294493863|gb|ADE92619.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           IHE3034]
 gi|307629516|gb|ADN73820.1| DNA methylase M [Escherichia coli UM146]
 gi|323950567|gb|EGB46445.1| N-6 DNA methylase [Escherichia coli H252]
          Length = 529

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 181/530 (34%), Gaps = 92/530 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG  + +                      F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGEDDKK-----------------LVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   +  +  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +      
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFIKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D+  +    ++         R  G+
Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVFGEDPHGLSPRTEGE 419

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRK 506
           +S       + D          +       F  +    A+ ++ DI+W K
Sbjct: 420 WSFNAEETEIADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLK 469


>gi|90425136|ref|YP_533506.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18]
 gi|90107150|gb|ABD89187.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18]
          Length = 489

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/543 (18%), Positives = 187/543 (34%), Gaps = 82/543 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +W     L  D     + + +   T L  L+   E  + +           
Sbjct: 2   TTTTDIVAKLWSLCHVLRDDGVT--YNEYVTELTFLLFLKMLEETGKESRL-------PK 52

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                +  K  G    +  +  L  LG    ++ L   I               F+    
Sbjct: 53  GYRWAALAKREGLDQLDYYKRLLLDLGKPEVKDGLVRAI---------------FTDAQT 97

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL K   L  +  +   ++    +  +  +  +YE L+ +  S+   GA  + TPR ++ 
Sbjct: 98  RLRKPTNLKALTSSIDQLDWF--SAREEGLGTLYEGLLEKNASDKKSGAGQYFTPRPLID 155

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
               L+           P +  T+ DP  GT GF+  A  ++ D        P      Q
Sbjct: 156 CIVRLM----------KPHVGETVQDPAAGTAGFIVAADRYIKDRTDDLYKLPEQQVFFQ 205

Query: 246 --------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                   EL P+TH +C+  +L+  +E          ++   TLS D     +    L+
Sbjct: 206 RHHAFNGAELVPDTHRLCMMNLLLHGIEG--------GVELADTLSPDGERLSKADLILT 257

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K    +          +           S+  + F+ H+   L+     GGRAA
Sbjct: 258 NPPFGTKKGGGRPTRSDFSITAD----------TSNKQLAFVEHVVRALKA----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF    G    ++R WL++   +  I+ LPT +F+   + T +      KT++
Sbjct: 304 VVVPDNVLFEDNTG---RDLRTWLMDLCSLHTILRLPTGIFYAQGVKTNVLFFQRGKTDK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
              K   +   DL  ++   G K R +      +    Y S   G             R+
Sbjct: 361 ANTKT--VWVYDLRANMPAFG-KTRPLTAADFAEFEKAYGSNPAG----------SAKRK 407

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
            +        F  D+        DI+W + + +     L   + +   I  +  A     
Sbjct: 408 DQGEEGRWRGFTRDQIKARNDNLDISWLRDTEVEAEEQLTEPEDIAAAIIGHLKAALEEI 467

Query: 538 ESI 540
           E++
Sbjct: 468 ETL 470


>gi|168232880|ref|ZP_02657938.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471895|ref|ZP_03077879.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458259|gb|EDX47098.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332905|gb|EDZ19669.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 529

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 108/585 (18%), Positives = 196/585 (33%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG                   K       F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGED-----------------KKKLVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   + ++  N   ++ +  T         ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     +  
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAD 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    +   +    +Y         R  G+
Sbjct: 361 TVANPHQDKNCTNDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRAEGE 419

Query: 464 F------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +      S + D                  F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEESEVADSEENKNTDQHQATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E     EA   +   +  F
Sbjct: 480 PEPDVLAAEAMGELVQALGELDALMRELGADEEADKQRQLLNAEF 524


>gi|206889888|ref|YP_002249480.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741826|gb|ACI20883.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 485

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/529 (18%), Positives = 189/529 (35%), Gaps = 72/529 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAF 62
             ++++   +W     L  D     +G  +        L+  +   +P  +       + 
Sbjct: 3   NESSTIVQRLWNYCNVLRDDGVS--YGDYVEQLTYLLFLKMADEQTKPPFN-----KPSI 55

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               +D +S ++  G S      + L +LG                   K +     F  
Sbjct: 56  IPKELDWQSLIERDGDSLEVHYRHILESLGKE-----------------KGMLGVI-FRK 97

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              +++    L ++ +  +        +   +   IYE L+++   +V  GA  + TPR 
Sbjct: 98  AQNKIQDPAKLKRLIELINNETWT--GLDIDIKGEIYEGLLQKNAEDVKGGAGQYFTPRP 155

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++      +          SP   +T++DP CGTGGFL  A  +++      K     + 
Sbjct: 156 LIKAIVECI----------SPEPGQTIHDPACGTGGFLLAAHEYISKNYRLDKEQKRFLK 205

Query: 243 H----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +    G+++      +CV  + +  +  +     +     G +L  D  TG+R+   L+N
Sbjct: 206 YNTFSGRDIVDSVVRLCVMNLYLHGIGGEESPIAT-----GDSLISD--TGERYDIILTN 258

Query: 299 PPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           PPFGKK        +   ++E    E   F       S+  + FL H+    +      G
Sbjct: 259 PPFGKKSSITIVNGEGKADRESLTYERRDFWA---TTSNKQLNFLQHV----KTITKING 311

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + A+V+  + LF G AG     IRR LL    +  ++ LPT +F+   +   +     RK
Sbjct: 312 KVAMVVPDNVLFEGGAGE---TIRRKLLAECDVHTLLRLPTGIFYAQGVKANVLFFD-RK 367

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLD 469
               +   + +   DL T++     K   +  +     +  Y      +RE  +  R   
Sbjct: 368 PASEKPWTEKLWIYDLRTNMH-FTLKTNPLRYEHLEDFIRCYNPENRRNREETERFRAFT 426

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           Y     R    L    +     +        DI  R+++   QS     
Sbjct: 427 YEELIQRDKVSLDIFWLKDESLEDSENLPSPDILAREITENLQSALEQF 475


>gi|218901962|ref|YP_002449796.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820]
 gi|218539137|gb|ACK91535.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820]
          Length = 484

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 186/491 (37%), Gaps = 68/491 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T +  L+   E   S+V ++        
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYLTELTYILFLKMMNEKGNSSVEDRVNIEHVIP 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +      V+         Y    L   ++ N++   I               ++     
Sbjct: 60  EEYRWESLVSREGIELKEHYQRLLLELGSSDNSILRQI---------------YADASTS 104

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + +   L KI K+   ++ +        + ++YE L+ +  SE   GA  + TPR ++ +
Sbjct: 105 ISEPKNLEKIIKSIDNLDWY--NAEKEGLGDLYEGLLEKNASETKSGAGQYFTPRVLIDV 162

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              L+           P +     DP  GT GF+  A  ++ +    +        +   
Sbjct: 163 MVKLV----------DPKIGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDVDPEQAEFQK 212

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   L+  +E          ++QG TLS +    K F   L+N
Sbjct: 213 TEAFTGMELVKDTHRLALMNALLHGIEG--------RLEQGDTLSSNGKWIKNFDVILTN 264

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE         + S+  + FL  + N L+   +G  RAA+
Sbjct: 265 PPFGTK------------KGGERATRDDLTFETSNKQLNFLQLIYNALK--DDGKARAAV 310

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L  + LF    G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+  
Sbjct: 311 ILPDNVLFESGIGA---QIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKTD-- 365

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           R   + +   DL T++ + G KR+ + +    + +  Y +      S++ + R   + R 
Sbjct: 366 RNSTKEVWVYDLRTNMPSFG-KRKPLTEGYFEEFMTAYNA---ENRSKVKNERWNVFTRE 421

Query: 479 KVLRPLRMSFI 489
           ++ +      I
Sbjct: 422 EIAKKEDSLDI 432


>gi|323141887|ref|ZP_08076748.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067]
 gi|322413634|gb|EFY04492.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067]
          Length = 470

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 173/488 (35%), Gaps = 83/488 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        + + +        L+         +    E+ +  G
Sbjct: 2   NTQEIVAKLWNLCNVLRD--DGITYHQYVTELTYILFLKM-------AKETGSEENIPEG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL +   +    FY                 NL  Y+    +      ++      
Sbjct: 53  YRWDDLLARKGLELKGFY----------------KNLLDYLG---ERCTGRIQEIY-KGA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI +    ++    +  +  + N+YE L+ +  +E   GA  + TPR +
Sbjct: 93  ATNIDEPKNLEKIIRTIDELDWF--SAKEEGLGNLYEGLLEKNANEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235
           + + T L+          +P       DP CGT GF+  A N V +  +          +
Sbjct: 151 IDVMTRLV----------APKAGERCNDPACGTFGFMIAASNFVREQTNDFFDLDEETAE 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + +   ++  ++S            G TLS      + +   
Sbjct: 201 FEYTQAFTGCELVHDTHRLALMNAMLHDIQSKIIL--------GDTLSNVGKEMQGYDVV 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE           S+  + FL H+   L+   +G  R
Sbjct: 253 LTNPPFGTK------------KGGERATRDDFTYPTSNKQLNFLQHIYRSLKA--DGKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G     IR  L++   +  I+ LPT +F+   + T +   +  KT
Sbjct: 299 AAVVLPDNVLFADGDGE---RIRVDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKT 355

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +  +   + +   DL T++ + G K   +           Y +      S++ D R   +
Sbjct: 356 D--KDSTKAVWFYDLRTNMPSFG-KTNPLKASDFAGFEAAYTA---EDRSKVADERWQCF 409

Query: 476 RRIKVLRP 483
            R ++ + 
Sbjct: 410 TREEIAQK 417


>gi|319765923|ref|YP_004131424.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|317110789|gb|ADU93281.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 493

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 95/494 (19%), Positives = 170/494 (34%), Gaps = 83/494 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T L  L                      
Sbjct: 2   NNREIVQKLWNLCNVLRD--DGITYHQYVTELTYLLFL---------------------- 37

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +K  G  +     Y    L   +    +   +  + +       +      +  
Sbjct: 38  ----KMMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQIY-TDA 92

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + + +   L KI +    ++ +     +  +  +YE L+ +  SE+  GA  + TPR +
Sbjct: 93  TSNIREPKNLEKIIRTIDALDWY--NAKEEGLGALYEGLLEKNASELKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           + +   L+           P      +DP  G  GF+  A  HV      +        +
Sbjct: 151 IDVIVELV----------DPKPGERCHDPAAGMFGFMIAASRHVRAKTDDYFDLSEEEIR 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + V   L+  +  D           G TLS      K +   
Sbjct: 201 FQKYKAFSGVELVRDTHRLAVMNALLHDVHGDILL--------GDTLSPLGEQLKGYDVI 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE           S+  + FL H+   L   PNG  R
Sbjct: 253 LTNPPFGTK------------KGGERATRTDFTFMTSNKQLNFLQHIYRALR--PNGKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF G  G+   +IRR L++   +  I+ LPT +F+   + T +   +  +T
Sbjct: 299 AAVVVPDNVLFEGGVGA---DIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRGET 355

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +   G  + +   DL T++ + G KR  +  D     +  Y +       ++ D R   +
Sbjct: 356 D--TGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTA---EDRHQVDDERWNVF 409

Query: 476 RRIKVLRPLRMSFI 489
            R  + +      I
Sbjct: 410 TRDDIAKKGDSLDI 423


>gi|92112219|ref|YP_572147.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043]
 gi|91795309|gb|ABE57448.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043]
          Length = 495

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 184/536 (34%), Gaps = 68/536 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           +A +LAN +W     L  D     +G  +        L+      +P             
Sbjct: 2   NAQTLANKVWNFCHTLRDDGVG--YGDYLEQLTYLIFLKMAHEYSQPPYRR--------- 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                       AGY + +    + + L +     +L   +   S     IF     +  
Sbjct: 51  -------DTGIPAGYGWPSLVRRTGAELEAHYL--DLLRTLGQQSGTLGQIF-----TKA 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L ++       +     +   V  +IYE L+ +   +   GA  + TPR +
Sbjct: 97  QNKIQDPAKLARVIHMIDAEKW--AMLDADVKGDIYESLLEKNAEDTKSGAGQYFTPRAL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIP 237
           +    A +           P   +T+ DP+ GTGGF   A + + +           +  
Sbjct: 155 IQAMVACV----------QPQPGKTIADPSAGTGGFFLAAYDWITEHHGARMDREQKQFL 204

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG E+   T  +C+  + +  +      D   NI     L        R+ Y L+
Sbjct: 205 KHHAFHGNEIVANTRRLCLMNLFLHNI---GEIDDQPNIAPTDALIGPAPA--RYDYVLA 259

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG+K        E E +  +            S+  + F+ H+   L+      G+A
Sbjct: 260 NPPFGRKSSMTVTNEEGEQEKEDFVYNRQDFWATTSNKQLNFVQHIRTMLK----ENGQA 315

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+  + LF G AG     +RR LL    +  I+ LPT +F+   +   +    N K  
Sbjct: 316 AVVVPDNVLFEGGAGE---TVRRKLLTTTELHTILRLPTGIFYANGVKANVLFFDN-KPG 371

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
                 + I   D  T++ +   KR+ +  +  ++ +D Y   +  +        T   R
Sbjct: 372 RAEPWTKDIWIYDYRTNVHHTL-KRKPLRLEHLQEFIDCYQPGQRDRRQETWSEATPDGR 430

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
             K    L      DK  L     DI W K   L     L     ++  I     A
Sbjct: 431 WRKYS--LDEVLKRDKVSL-----DIFWLKDESLGDMDNLPEPDVLIGDIIENLEA 479


>gi|325926905|ref|ZP_08188186.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325926912|ref|ZP_08188193.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325542721|gb|EGD14182.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325542728|gb|EGD14189.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
          Length = 514

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 201/568 (35%), Gaps = 79/568 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   +   +W   + L       ++   +    LL  ++   E  ++    E  L  G  
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFVKMEYEQVQNNPNFEHKLPEGSR 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             DL+             S+  L+ L   + R  L +   S      AI+ D        
Sbjct: 60  WPDLK-------------SKSGLNLL--NHYRQMLLNLGQSSDPMIAAIYAD-----AQT 99

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++ 
Sbjct: 100 RLKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALID 157

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HK 235
                +           P +   + DP  GT GFL  A  ++                  
Sbjct: 158 SIIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPEVTAKKRS 207

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  ++ +    +    + G++LS            
Sbjct: 208 FQREKAFVGMELVPGTRRLALMNCLLHGMDGEGAGPI----RLGNSLSNAGRELPPADII 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG              K G          K S+  + FL H+   L+     GGR
Sbjct: 264 LSNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGR 307

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +        
Sbjct: 308 AAVVLPDNVLFEAGVG---TDIRRDLMDKCNLHTLLRLPTGIFYAQGVKTNVLFFQKGTA 364

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
               +  G  Q     DL +++ + G KR        +   + Y S  NG   R  +   
Sbjct: 365 ANPRQDTGCTQATWVYDLRSNMPSFG-KRTPFGPTHLKPFEEAYGSDPNGASPRTDEGEQ 423

Query: 473 FGYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             +R     +       L +S++ D   +   ++      L+    +   + L+ +   +
Sbjct: 424 GRFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALM 482

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASK 554
              G  +  +++     E   L+V +S+
Sbjct: 483 QALGAGDEALEQKRLLAEVMGLEVTSSE 510


>gi|86146744|ref|ZP_01065064.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
 gi|85835394|gb|EAQ53532.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
          Length = 340

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 30/259 (11%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+GG    ++  + +   H      +  +GQEL   T+ +    + IR L   
Sbjct: 8   KIYDPACGSGGMFVQSLKFIKE---HEGRTKDIAIYGQELTSTTYKLAKMNLAIRGLSG- 63

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +   +   T   D     +  Y ++NPPF  K  +++  +  + +       G  
Sbjct: 64  -----NLGERAADTFFADQHKDLKADYIMANPPFNLKGWRNEAELTDDARFA-----GYR 113

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +++H+ +KL    +  G A  VL++  +    + SGE EIR+ L+END +
Sbjct: 114 TPPTGNANYGWILHMLSKL----SETGTAGFVLANGSM--SSSTSGEGEIRQQLIENDRV 167

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKK 440
           E ++ALP  LFF T I   +W ++  KTE        R+ +   I+A ++   I    + 
Sbjct: 168 ECMIALPGQLFFTTQIPVCIWFITKDKTENTTKGFRNRQKETLFIDAREMGAMI---SRT 224

Query: 441 RRIINDDQRRQILDIYVSR 459
            + +  D    I D Y + 
Sbjct: 225 NKELTKDDIALIADTYHAW 243


>gi|161617830|ref|YP_001591795.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367194|gb|ABX70962.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 529

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 166/482 (34%), Gaps = 85/482 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG                   K       F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGED-----------------KKKLVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   + ++  N   ++ +  T         ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     +  
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAD 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    +   +    +Y         R  G+
Sbjct: 361 TVANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRTEGE 419

Query: 464 FS 465
           +S
Sbjct: 420 WS 421


>gi|42779917|ref|NP_977164.1| type I restriction-modification system, M subunit [Bacillus cereus
           ATCC 10987]
 gi|42735835|gb|AAS39772.1| type I restriction-modification system, M subunit [Bacillus cereus
           ATCC 10987]
          Length = 484

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 93/491 (18%), Positives = 179/491 (36%), Gaps = 68/491 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T +  L+   E   S+  ++        
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYLTELTYILFLKMMNEKGNSSSEDRVNIEHVIP 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +      V+         Y    L   ++ N++   I               ++     
Sbjct: 60  EEYRWESLVSREGIELKEHYQRLLLELGSSDNSILKQI---------------YADASTS 104

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + +   L KI K+   ++ +        + ++YE L+ +  SE   GA  + TPR ++ +
Sbjct: 105 ISEPKNLEKIIKSIDNLDWY--NAEKEGLGDLYEGLLEKNASETKSGAGQYFTPRVLIDV 162

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              L+           P +     DP  GT GF+  A  ++ +    +        +   
Sbjct: 163 MVKLV----------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDPEQAEFQK 212

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   L+  +E          ++ G TLS +          L+N
Sbjct: 213 TEAFTGMELVKDTHRLALMNALLHGIEG--------RLEHGDTLSSNGKWLTSLDVILTN 264

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE         + S+  + FL  + N L+   +G  RAA+
Sbjct: 265 PPFGTK------------KGGERATRDDLTFETSNKQLNFLQLIYNALK--DDGNARAAV 310

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L  + LF    G+   +IRR L++   +  I+ LPT +F+   + T +   +  KT+  
Sbjct: 311 ILPDNVLFESGIGA---QIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTREKTD-- 365

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           R   + +   DL T++ + G KR  + +      +  Y +      S + D R   + R 
Sbjct: 366 RDSTKEVWVYDLRTNMPSFG-KRTPLTEKHFDDFIKAYHA---ENRSNVEDERWNVFTRE 421

Query: 479 KVLRPLRMSFI 489
           ++ +      I
Sbjct: 422 EIAKKDDSLDI 432


>gi|304383190|ref|ZP_07365663.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella marshii DSM 16973]
 gi|304335661|gb|EFM01918.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella marshii DSM 16973]
          Length = 473

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 99/526 (18%), Positives = 175/526 (33%), Gaps = 79/526 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +  +L   +W  A  L G      +   I   T L  L   ++     + E+  
Sbjct: 1   MTINISTEQALTKKVWNLATTLAGAGVA--YTDYITQLTYLLFL--KMDAENEELFEEGS 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +         + +++ G       E +L  L              S  DN         F
Sbjct: 57  SIPE-GYRWRNLIELDGLDLTEQYEKTLKIL--------------SEQDNLIGTI----F 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +     ++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNEIDKPVYLKKVISMIDEEQWL--VMDGDVKGAIYEGILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +           P +  T+ DP CGTGGFL  A + +            L
Sbjct: 156 RPLIQAMVDCI----------KPKIGETVCDPACGTGGFLLAAYDCMKQQSQDKDKREFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D      ++  +                 L+
Sbjct: 206 NNKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIACEDSLE-------KEPDTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IR+ LL +  +  I+ LPT +F+   +   +   +  +  +
Sbjct: 304 VVLPDNVLFEGGAGE---TIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFTKGQPTK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                  I   D  T +++     + +        +  Y +       R+  Y     R 
Sbjct: 361 D------IWFYDYRTDVKHTLATNK-LQRHHLDDFVACYTA-----NPRVETYNEDTARD 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            +  +      + D     +   DITW K     + F LD L   +
Sbjct: 409 GRWRKY----EVEDILARDKTSLDITWIKAGGEEEQFTLDELMTNI 450


>gi|307945076|ref|ZP_07660412.1| type I restriction-modification system DNA methylase [Roseibium sp.
           TrichSKD4]
 gi|307770949|gb|EFO30174.1| type I restriction-modification system DNA methylase [Roseibium sp.
           TrichSKD4]
          Length = 722

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 162/461 (35%), Gaps = 45/461 (9%)

Query: 10  SLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
                +W  A++L  +      ++   I+    LR+         +A+  +       + 
Sbjct: 11  QFDAELWTIADNLRANSGLASNEYFMPIMGLLFLRQATNRYYEALAAIEAEKANGKMPDR 70

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIA 125
            L         +           +       +L   + +  +  +  F            
Sbjct: 71  PLRDVDFTRRRAMMLPEAARYDVILDQPKDGSLGEALTAAMEAVEEHFPPLAGQLPKDYE 130

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R +   LL  + + F    L        V   IYE+ +  F  + +    +F TP  +V 
Sbjct: 131 RFDD-ELLESMMRKFDTEALR--KASGDVFGRIYEYFLAEFSKQGAHDNGEFFTPPSIVQ 187

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
                +++PD  +          ++DP CG+GG    + + +   G        +  +G 
Sbjct: 188 TIVN-VIEPDHGI----------IFDPACGSGGMFVQSSHFIEHEGKD--TMKRVTFYGH 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNP 299
           E    T  +    + +  L+   +                           +  + ++NP
Sbjct: 235 EKNETTAKLAQINLAVHGLQGSIQAGNEAITYYKDPHELIQHDKNADRVIGKCDFVMANP 294

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF      D+   EK   +  L    PG+ K   +S+ + L++ +  N L+      GRA
Sbjct: 295 PFNV----DEVDAEKVKNDPRLPFGLPGVNKAKKVSNANFLWMSYFYNYLK----DTGRA 346

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+SS       AG  E+++R+ L+E   ++ ++ +  + F+   +   LW     K  
Sbjct: 347 GVVMSSQA---SSAGRDEAKVRQKLVETGAVDVMIDIRGNFFYTRTVPCQLWFFDRAKEA 403

Query: 417 E--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +  R+  V +++A +++  +    +     + +Q++ I  I
Sbjct: 404 DEARKDHVLMLDARNIYRKV---SRAIYDFSPEQQKNIAAI 441


>gi|261415743|ref|YP_003249426.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372199|gb|ACX74944.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325604|gb|ADL24805.1| type I restriction-modification system, M subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 624

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 106/588 (18%), Positives = 199/588 (33%), Gaps = 67/588 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             S   L   +W++A+ L  D K     +   +L    LR      +   + + +   + 
Sbjct: 3   NKSLKKLEADLWESADLLRADSKLTSNQYCMPVLGLLFLRYAYGRFKKVEAELLKNRPSR 62

Query: 63  GGSNIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTR-------------------NNLE 101
           GG  + +E+  FV  +       +++        N                     NN  
Sbjct: 63  GGRVLPIEASDFVSKSALFLPKEAQFDYLVNLPANIASAKLKNVHGQPLNSLGEVVNNAM 122

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             + + S+  K +              K  LL ++ + F+   L  D V   VM  IYE+
Sbjct: 123 ELVEAQSEKLKGVLPKTYTD------FKDNLLAELLRTFNNNAL--DDVGGDVMGRIYEY 174

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F   ++     F TP+ +V +   +L      L            DP CG+GG   
Sbjct: 175 FLSKFAKNIASDDGVFFTPKSLVKMIVNVLEPSYGVLL-----------DPACGSGGMFV 223

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              + V   G        +  +GQE       +C+  M +  L    +     N      
Sbjct: 224 QTGDFVNAAGMASN--ETMTFYGQEKVEYNAQLCLMNMAVHGLTGVVKSGDEANSFYHDA 281

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLF 338
            +       +  Y ++NPPF      DK   E     G L    P + K   I +G+ L+
Sbjct: 282 HN----LTGQCDYVMANPPFNV----DKVKAESCQSAGRLPFGLPAVNKDKEIGNGNYLW 333

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + +  + L    N  GRA  V+++S      + S + +IR  L+    ++ ++++  + F
Sbjct: 334 ISYFYSYL----NEKGRAGFVMAASA---TDSQSKDKDIREKLVATGHVDCMISVGNNFF 386

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +  ++   LW     K +  + KV  I+A + +T +     +           I+ +Y  
Sbjct: 387 YTKSLPCTLWFFDKCKKKNIKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYRG 446

Query: 459 RENGKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
             +   S + +YRT    Y        L            ++E    +R+         +
Sbjct: 447 ELDKYQSLLAEYRTTLLSYADETDDANLEKILRKTSKIAKQVELLKEYRETLRAEAKASV 506

Query: 517 DILKPMMQQIYPYGWAES---FVKESIKSNEAKTLKVKASKSFIVAFI 561
           D      ++     W      F +    + EA  L  K         +
Sbjct: 507 DAADKKSKKKTQEEWDTRLAEFDEILNVAKEADWLYEKFGDGKYKDIL 554


>gi|251798709|ref|YP_003013440.1| N-6 DNA methylase [Paenibacillus sp. JDR-2]
 gi|247546335|gb|ACT03354.1| N-6 DNA methylase [Paenibacillus sp. JDR-2]
          Length = 494

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 94/491 (19%), Positives = 174/491 (35%), Gaps = 79/491 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGSN 66
              +   +W     L        + + +   T +  L+   E     +  E+Y     + 
Sbjct: 3   NQDIVQKLWNLCNVLRD--DGITYHQYVTELTYVLFLKMMKETDNEGILPEQYRWDSLTE 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                      +       Y    L   N  N     I               + +  + 
Sbjct: 61  ----------RHGMALQQHYRQLLLDLGNQGNETIKQI---------------YMNATSN 95

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + +   L KI  +   ++ +  +  +  + ++YE L+ +  SE   GA  + TPR ++ +
Sbjct: 96  INEPKNLEKIITSIDQLDWY--SAKEEGLGDLYEGLLEKNASETKSGAGQYFTPRPLIDV 153

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
            T L+           P       DP  GT GF+  A  HV +    +        +   
Sbjct: 154 ITKLV----------DPQPGERCNDPAAGTFGFMIAADRHVRNNTDDYFDLGEKEAEFQK 203

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   ++  +  +           G TLS D    K F   L+N
Sbjct: 204 HQAFTGVELVKDTHRLAMMNAMLHDIHGEIIL--------GDTLSDDGTNLKNFDVILTN 255

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            + GE           ++  + FL H+   L+   NG  RAA+
Sbjct: 256 PPFGTK------------QGGERPTRDDLTFATTNKQLNFLQHIYRALKA--NGKARAAV 301

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L  + LF    G   ++IR  L++   +  I+ LPT +F+   + T +   +  KT+  
Sbjct: 302 ILPDNVLFESGVG---TKIRADLMDKCNLNTILRLPTGIFYAQGVKTNVLFFTREKTD-- 356

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +   + I   DL T++ + G KR  +        +  Y++      +++ D R   + R 
Sbjct: 357 KDSTKNIWVYDLRTNMPSFG-KRNPLTVSHFDAFVAAYMA---EDRTKVEDERWNVFTRE 412

Query: 479 KVLRPLRMSFI 489
            + +      I
Sbjct: 413 DIRKKDDSLDI 423


>gi|730885|sp|P07989|T1M_SALPO RecName: Full=Type I restriction enzyme StySPI M protein;
           Short=M.StySPI
 gi|154132|gb|AAA27143.1| restriction-modification enzyme type I M subunit [Salmonella
           enterica]
          Length = 529

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 187/549 (34%), Gaps = 92/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADEKKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  +   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSSMDSLDWYNGDHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDA 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     +  
Sbjct: 204 QDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAD 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETL----PPG 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAAVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    +   +    +Y         R  G+
Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRTEGE 419

Query: 464 F------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +      S + D                  F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEESEVADSEENKNADQHQATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479

Query: 517 DILKPMMQQ 525
                +  +
Sbjct: 480 PEPDVLAAE 488


>gi|147920299|ref|YP_685930.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
 gi|110621326|emb|CAJ36604.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
          Length = 485

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/527 (17%), Positives = 177/527 (33%), Gaps = 66/527 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAF 62
             ++++   +W     L  D     +G  +        L+  +   +P  +       + 
Sbjct: 3   TESSTIVQRLWNYCNVLRDDGVS--YGDYVEQLTYMLFLKMADEQSKPPFN-----KPST 55

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +  D  S +   G         +L  LG                   K +     F  
Sbjct: 56  IPAGYDWSSLLSKDGVELETHYIDTLKKLGQE-----------------KGMLGVI-FRK 97

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +  +++    L ++    +G       +   V   IYE L+++   +   GA  + TPR 
Sbjct: 98  SQNKIQDPAKLKRLIDLINGETWT--GLDIDVKGEIYEGLLQKNAEDTKSGAGQYFTPRP 155

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPP 238
           ++     ++           P    T+ DP CGTGGFL  A ++++          K   
Sbjct: 156 LIKAMVDVI----------RPQPGETICDPACGTGGFLLAAHDYISKKYQLDRDQKKFLK 205

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +    G+++      +CV  + +  +  D           G  L  D   G RF   L+N
Sbjct: 206 LNTFKGKDIVDNVARLCVMNLYLHGIGGDESPVDV-----GDALVAD--PGDRFDIILTN 258

Query: 299 PPFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFGKK      +   K  +   +          S+  + FL H+   L++     G+ A
Sbjct: 259 PPFGKKSSITIVNGDGKGDREALVYERQDFWATTSNKQLNFLQHVKTLLKI----NGKCA 314

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV+  + LF G AG     +R  LL    +  ++ LPT +F+   +   +     R    
Sbjct: 315 IVVPDNVLFEGGAGE---TVRHKLLMECDVHTLLRLPTGIFYAQGVKANVLFFDRR-PAS 370

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRT 472
           +  + Q +   DL T++     K   +  D  +  +  Y       R+  +  +   Y  
Sbjct: 371 KDPQTQKLWIYDLRTNMH-FTLKTNPLKYDDLQDFIQCYNPENRHERKETERFKAFTYDQ 429

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              R    L    +     +        ++  R++    ++      
Sbjct: 430 LMQRDKVSLDIFWLKDESLEDSENLPAPEVIAREIVENLEAALEQFR 476


>gi|323477547|gb|ADX82785.1| type 1 restriction modification enzyme, subunit m [Sulfolobus
           islandicus HVE10/4]
          Length = 586

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/514 (17%), Positives = 187/514 (36%), Gaps = 50/514 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E   S   L   + + A+ +       D+  + L F   + +    E   + + +     
Sbjct: 86  ESELSKGDLFTVLKQGADLIRLGL---DYRSL-LVFLFYKAISDKYEDEVNQIIKD-EGL 140

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                 + +  K   Y        + + +    +     ++ +  F+             
Sbjct: 141 SKKEAYIVANSKFKMYDENTGELLTWNEITKKNDYLVEFQNALIKFATLNPETISKDLMI 200

Query: 122 STIARLEKAGLLYKICKNFSGIE-----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           + + +L  + L  +       I+     L    V    + + Y +++ +F     +   +
Sbjct: 201 ALLNKLGISNLTSEHKAKLDQIKRLFDKLDFSNVNYDAIGDAYMYILAQFAPTKGKE-GE 259

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP +V+ L   L+           P     + DP  G+G  L +A  ++ +       
Sbjct: 260 VYTPHEVIKLLIRLI----------DPEPGSDILDPAMGSGAMLIEAYKYIKEKNG---- 305

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFH 293
              +   GQE  P+  A+     ++  +E++        +Q G +L K  F+     +  
Sbjct: 306 --GVKLFGQEYNPDMAAIAKLNFILHGIENNLVE-----VQIGDSLRKLKFSENSQFQVD 358

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPP+ +    ++              F  G    +     ++  +    +      
Sbjct: 359 YVVANPPWNQDGYGEESIGNDISLRKI---FKYGFTPNNTADWAWVQLMLYYAKK----- 410

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            +  +VL    L        E  IR  ++  DLIEAI+ LP  LF+ T ++  + IL+  
Sbjct: 411 -KVGVVLDQGALSR---EGKERTIRERIVNEDLIEAIILLPEKLFYNTQVSGIIMILNKE 466

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRT 472
           K +ER+GK+  I+ATDL+     E +K   ++D+  +QI++ Y   +    FSR++D   
Sbjct: 467 KEKERKGKILFIDATDLYIK-HPEVRKLNKLDDEHIQQIVETYREFKTVLSFSRVVDIEE 525

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  +     ++   +   ++  E +  W  
Sbjct: 526 IIKNDYNLNVSYYVTKHANNNSVSIKEIEELWDN 559


>gi|303239473|ref|ZP_07326000.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
 gi|302593036|gb|EFL62757.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
          Length = 494

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 124/550 (22%), Positives = 197/550 (35%), Gaps = 67/550 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   S  S+ + IW     L  D     +G  +   T L  L+ A E ++        
Sbjct: 1   MSENNTS--SVVSKIWSFCNTLRDDGVG--YGDYLEQLTYLLFLKMAYEFSKPPYNRTLP 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                N D                  SL+ +       +    +     N K I     F
Sbjct: 57  IPEKYNWD------------------SLTEVKGAELEVHYNELLRELGKN-KGILGQI-F 96

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +  +++    L K+       +    T+   +   IYE L+ +   +V  GA  + TP
Sbjct: 97  TKSQNKIQDPAKLSKLIDMIDKEQWS--TMGADIKGQIYEGLLEKNAEDVKSGAGQYFTP 154

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      L           P  ++T+ DP CGTGGFL  A +++    S  K     
Sbjct: 155 RPLIKGIVKCL----------RPEPMKTISDPACGTGGFLLAAYDYIVQNYSLDKEQKHF 204

Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+   T  + +  M +  +      D    I    +L  D  TG R  Y L
Sbjct: 205 LKYKTFFGNEIVANTRRLALMNMFLHNIGD---IDSDNFISSADSLIAD--TGLRVDYVL 259

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPFGKK        E E +  +L           S+  + F+ H+   L+      GR
Sbjct: 260 TNPPFGKKSSMTFTNEEGEQETDDLTYNRQDFWATTSNKQLNFVQHIRTLLK----SDGR 315

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF G AG     +R+ LLE   +  I+ LPT +F++  +   +    N K 
Sbjct: 316 AAVVLPDNVLFEGGAGE---TVRKKLLETTELHTILRLPTGIFYKPGVKANVIFFDN-KP 371

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDYRTF 473
             +    + +   D  T+I    KK   +  D   + +  Y   +R + + +   D    
Sbjct: 372 ASKDPWTKEVWIYDFRTNIHFTLKK-NPLKVDDLDEFIKCYNPENRHDREETWKPDTNPE 430

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA- 532
           G          R     D     +   DITW K   L     L     +   I     A 
Sbjct: 431 GRW--------RRFSYEDIVNRDKTSLDITWIKDKSLADLDNLPDPDELANDIVENIEAA 482

Query: 533 -ESFVKESIK 541
            ESF +  +K
Sbjct: 483 LESFREIMVK 492


>gi|302874006|ref|YP_003842639.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
 gi|307689745|ref|ZP_07632191.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
 gi|302576863|gb|ADL50875.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
          Length = 472

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/524 (19%), Positives = 182/524 (34%), Gaps = 87/524 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   + + +W     L        + + +        L+         +    E  L  G
Sbjct: 2   NTQEIVSKLWNLCNVLRD--DGITYHQYVTELTYILFLKM-------AKETGAEDKLPQG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL++   +   +FY                      +    +    I +     S 
Sbjct: 53  YKWDDLKTKSGIELKTFYK-------------------ELLNHLGEETTGIVQQIYQGSA 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +E+   L KI     G++ +  +  +  + N+YE L+ +  SE   GA  + TPR +
Sbjct: 94  TN-IEEPKNLEKIITTIDGLDWY--SAKEEGLGNLYEGLLEKNASEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           + +   L+           P       DP  GT GF+  A +++ +   ++        +
Sbjct: 151 IDVMVKLI----------DPRPGEKCNDPAAGTFGFMIGADHYLKEKTDNYFDLDTDLAE 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  ETH + +   ++  +E         NI  G TL+       +    
Sbjct: 201 FQRTKAFSGCELVHETHRLALMNAMLHGIEG--------NIILGDTLTNVGKQMNQLDVV 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG K            K GE           S+  + FL H+   L+   +   R
Sbjct: 253 LSNPPFGTK------------KGGERATRDDLTYMTSNKQLNFLQHIYRSLKA--DNKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G   ++IR  L++   +  I+ LPT +F+   + T +   +  K 
Sbjct: 299 AAVVLPDNVLFQEGDG---TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGK- 354

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRM--LDYR 471
            E +G  + +   DL T++ + G K   + +      +  Y   +RE  +  R       
Sbjct: 355 -EDKGNTKEVWFYDLRTNMPSFG-KTNPLKETHFEDFIKAYTADNREAVEDERWNKFTRE 412

Query: 472 TFGYRRIKVLRPL-RMSFILDKTGLARL--EADITWRKLSPLHQ 512
               +   +   L +   ILD   L      A+    KL     
Sbjct: 413 QIKEKNDNLDLGLIKDDSILDYEDLPDPIESAEEAVAKLEEATD 456


>gi|88707229|ref|ZP_01104916.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
 gi|88698522|gb|EAQ95654.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
          Length = 262

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 117/278 (42%), Gaps = 28/278 (10%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P+  + N YE+LI++F  +    A++F T R +VHL   +L           P     +
Sbjct: 1   MPEDELGNGYEYLIKQFADDSGHTAQEFYTNRTLVHLMAQML----------EPKAGEII 50

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPTCGTGG L   +  V       +       +GQEL   T A+    +++  +     
Sbjct: 51  YDPTCGTGGMLISCLAEVKRTSGDTRTMG---LYGQELINITAAIARMNLVLHGVSD--- 104

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            D+            +    K F   L+NPP+  K            ++ + GR   G P
Sbjct: 105 FDIRSGNTLHEPALIEGDRLKTFDVVLANPPYSIKKWNRVA-----WQSDQWGRNFLGTP 159

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                   F  H+   ++      GR AI+     LF       E+++R  L+E DL+E 
Sbjct: 160 PQGRADYAFFQHILKSMD---PQTGRCAILFPHGVLFRNE----EADMRTKLIEADLLEC 212

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           ++ L  +LF+ + +   + I    K  ERRGK+  INA
Sbjct: 213 VLGLGPNLFYNSPMEACVLICRTSKLSERRGKILFINA 250


>gi|332520739|ref|ZP_08397201.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044092|gb|EGI80287.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix
           algicola 5H-3-7-4]
          Length = 467

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/519 (19%), Positives = 180/519 (34%), Gaps = 85/519 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63
           +   + N +W     L        + + +  L F   L+  E         + E Y    
Sbjct: 4   TTQEIVNKLWNLCNVLRD--DGITYHQYLNELTFILFLKMAEET--DYNDKLPEGYRWEN 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +          +FY      L T  + N +                      +++ 
Sbjct: 60  LKQKEGVELA-----TFYRKLLLHLGTESTGNIQKI--------------------YNNA 94

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI K+   ++       D  +  +YE L+ +  SE   GA  + TPR +
Sbjct: 95  QTSIQEPANLRKIIKHIDELDWF--EAKDEGLGEMYEGLLEKNASEKKSGAGQYFTPRPL 152

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKI 236
           +++   L+           P +   L DP CGT GF+  A +++             +  
Sbjct: 153 INVMVRLM----------DPKVGERLNDPACGTYGFMIAAHHYILKHNDIYNLTEEQNNH 202

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL  +TH + +    +  +          NI  G +LS    + K     L
Sbjct: 203 LQTEQYSGCELVGDTHRLAMMNAFLHGMGG--------NIALGDSLSSYGESIKNMDLVL 254

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG K            K G+       +   S+  + FL  +   L     GG RA
Sbjct: 255 ANPPFGTK------------KGGDRPTRTDLVYPTSNKQLNFLQGIYRSLH--TRGGARA 300

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G     +R+ L+E   +  I+ LPT +F+   + T +      KT+
Sbjct: 301 AVVLPDNVLFEDGDG---QNVRKDLMEKCNLHTILRLPTGIFYAAGVKTNVLFFERGKTD 357

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRMLDYR 471
             +   + +   D+ T++   G KR    +         Y ++     ++ +FS  +   
Sbjct: 358 --KANTKNVWFYDMRTNMPKFG-KRTPFTESYFADFEKAYTAKDRNKIKDERFS-CISRE 413

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           T   +   +   L +   + K        DI    L+ L
Sbjct: 414 TIAKKNDSLDLGLIVDDSITKAEDVGEPLDIAKEALTEL 452


>gi|313205416|ref|YP_004044073.1| site-specific DNA-methyltransferase (adenine-specific)
           [Paludibacter propionicigenes WB4]
 gi|312444732|gb|ADQ81088.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Paludibacter propionicigenes WB4]
          Length = 491

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/535 (18%), Positives = 186/535 (34%), Gaps = 67/535 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           + +S+ + +W     L        +G  +        L+  +   +P  +        + 
Sbjct: 2   TTSSIVSKVWSFCNPLRDVGVG--YGDYLEQLTYLLFLKMADEYSKPPHNRKLNIPKEYN 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                                  SL+ +       +  + +   S   K I     F+ +
Sbjct: 60  WE---------------------SLTGVKGAELELHYATLLRELS-TQKGILGQI-FTKS 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++   +L KI       +     +   V  +IYE L+ +   +V  GA  + TPR +
Sbjct: 97  QNKIQDPAMLAKIIDMIDSEQWL--VMGADVKGDIYEKLLEQNAQDVKSGAGQYFTPRPL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPI 239
           +      +           P  ++T+ DP CGTGGF   A +++          +K   +
Sbjct: 155 IRAMVECI----------QPQPLKTIADPACGTGGFFLAAYDYLVANNKLDKDQNKFLKL 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G E+   T  + +  M +  +      +           +    +   + Y L+NP
Sbjct: 205 ETFYGNEIVASTRRLALMNMFLHNIGDIDSDNFIS-----PADALIAASSTTYDYVLANP 259

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKK  +     E E +  +L           S+  + F+ H+ + L+      G AA+
Sbjct: 260 PFGKKSSQTFTNEEGEQEKDDLTYNRQDFWATTSNKQLNFVQHIRSMLKT----TGMAAV 315

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+  + LF G AG     +R+ LLE   +  I+ LPT +F+   +   +    N K   +
Sbjct: 316 VVPDNVLFEGGAGE---TVRKKLLETTDLHTILRLPTGIFYANGVKANVIFFDN-KPASK 371

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
               + +   D  T++ +  KK   +N D  +  +  Y      +F R     T  Y   
Sbjct: 372 TPWTKEVWVYDYRTNVHHTLKK-NPLNIDVLKDFIACYN--PANRFKR-----TETYNAE 423

Query: 479 KVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
                    F  D+     +   DITW K   L     L   + +   I     A
Sbjct: 424 TNPEGKWRKFSYDEIVARDKTSLDITWLKDKSLADLDNLPDPEDLATDIIENLEA 478


>gi|167970986|ref|ZP_02553263.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701152|gb|EDU19434.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 367

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 160/394 (40%), Gaps = 35/394 (8%)

Query: 136 ICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +    + ++L         V  + YE+L+  + +   +   +F TP++V  L   L L  
Sbjct: 1   MLIRINELDLGNYQDNTIDVFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLID 60

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            +   K+    I  +YDP CG+G  L            + K+   +  +GQE+   T+ +
Sbjct: 61  FNNENKDVRRKIGKVYDPCCGSGSLLLK----------YAKLNEGVKFYGQEINLTTYNL 110

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVE 313
               M +  +  D       +I+ G TL        + F   +SNPP+  KWE   + + 
Sbjct: 111 ARINMFLHNIGYDK-----FDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLL 165

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              +   + +  P           F++H+ + L    +  G AAIV+    L+   A   
Sbjct: 166 ANDERFHVTQLAP----KGKADFAFVLHILHNL----SSSGTAAIVMFPGTLYRDHA--- 214

Query: 374 ESEIRRWL-LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLW 431
           E +IR++L    +++++++ LP +LFF T+I+T + +L   K        +  ++A+  +
Sbjct: 215 EQDIRKYLVDNVNVVDSVIQLPDNLFFGTSISTCIIVLRKNKNNNDNANGILFVDASKEF 274

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
                    +  + +   ++I+D     +E   FS+++       +   +     +    
Sbjct: 275 VK----SGIKNKLTNANIKKIVDTIRFKKEVTYFSKLVSREEVKNKNYNLSVNTYVEKED 330

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
               +     ++  +++    +    +I + +++
Sbjct: 331 TSEKIDIKLLNMQIKEIVAKIEKLRKEIDEIVLE 364


>gi|291485260|dbj|BAI86335.1| hypothetical protein BSNT_04128 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 476

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 101/491 (20%), Positives = 181/491 (36%), Gaps = 77/491 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T L  L+   E     V  +        
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYVTELTYLLFLKMMKEQETEGVIPE-------G 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              +  +   G       +  L  LGS              S+N +       +S     
Sbjct: 53  YRWDDLLDKEGLELKTFYQRLLLELGS--------------SENERLRLI---YSDASTS 95

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + +   L KI K+   ++ +     +  + N+YE L+ +  SE   GA  + TPR ++ +
Sbjct: 96  IAEPKNLEKIIKSIDALDWY--NAKEEGLGNLYEGLLEKNASEKKSGAGQYFTPRVLIDV 153

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              L+           P +     DP  GT GF+  A  ++ +    +        +   
Sbjct: 154 MVQLI----------DPKIGERCADPAAGTFGFMIAADQYLKNQTDDYFDIEPQEAEFQK 203

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   L+  +E          ++QG TLS +    K F   L+N
Sbjct: 204 KEAFVGMELVKDTHRLALMNALLHNIEG--------RLEQGDTLSGNGKWMKNFDVILTN 255

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE         + S+  + FL  + N L+   +G  RAA+
Sbjct: 256 PPFGTK------------KGGERVSRDDLTFETSNKQLNFLQLIYNALK--DDGNARAAV 301

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L  + LF    GS   +IRR L+    +  I+ LPT +F+   + T +   +   T+  
Sbjct: 302 ILPDNVLFESGIGS---QIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTRGTTD-- 356

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +   + +   DL T++ + G KR  +        +  YV+      S++ D R   + R 
Sbjct: 357 QDNTKDVWVYDLRTNMTSFG-KRNQLTMAHFEHFMKAYVA---EDRSKVEDERWNKFSRE 412

Query: 479 KVLRPLRMSFI 489
           ++ +      I
Sbjct: 413 EIAKKDDSLDI 423


>gi|126667032|ref|ZP_01738007.1| N-6 DNA methylase [Marinobacter sp. ELB17]
 gi|126628438|gb|EAZ99060.1| N-6 DNA methylase [Marinobacter sp. ELB17]
          Length = 498

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 165/463 (35%), Gaps = 66/463 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYL 60
            + ++A + + +W     L  D     +G  +        L+  +   +P  +       
Sbjct: 1   MSPASAPIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMADEYAKPPYN------- 51

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDF 118
                                   +Y   TL +         Y+         K +    
Sbjct: 52  -----------------RDVGIPEQYRWHTLKTKKGAELEVLYVELLRALGTQKGMLGQI 94

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F+    +++    LY++       +     +   V  +IYE L+ +   +   GA  + 
Sbjct: 95  -FTKAQNKIQDPAKLYRLIDMVDSTQW--VIMGADVKGDIYEGLLEKNAEDTKSGAGQYF 151

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------GS 232
           TPR ++      L           P   +T+ DP CGTGGF   A + + D        +
Sbjct: 152 TPRALIRAMVDCL----------RPEPGKTIADPACGTGGFFLAAYDFLTDTQNYQLDKA 201

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      G E+   T  +C+  M +  + E D    +S N            + + 
Sbjct: 202 QKSFIKHDTFFGNEIVANTRRMCLMNMFLHNIGEIDGDSLVSPNDAL------VAASPQS 255

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPP 350
           F Y L+NPPFGKK        E E +  +L           S+  + F+ H+ + L+   
Sbjct: 256 FDYVLANPPFGKKSSMSFTNEEGEQETDDLTYNRQDFWATTSNKQLNFVQHIRSMLKT-- 313

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA+V+  + LF G AG     IRR LL+N  +  I+ LPT +F+   +   +   
Sbjct: 314 --TGKAAVVVPDNVLFEGGAGE---TIRRKLLKNTDLHTILRLPTGIFYAHGVKANILFF 368

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            N+ T       + +   D  T++ +  KK+ +  +D    I 
Sbjct: 369 DNQ-TASPSPWTKEVWFYDYRTNVHHTLKKKPLRYEDMADFIA 410


>gi|89891080|ref|ZP_01202588.1| type I restriction-modification enzyme, M subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516724|gb|EAS19383.1| type I restriction-modification enzyme, M  subunit [Flavobacteria
           bacterium BBFL7]
          Length = 495

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/463 (20%), Positives = 166/463 (35%), Gaps = 79/463 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           SA  +AN +W     L  D   +  +      IL    L+  E            ++  F
Sbjct: 2   SADEIANKLWNLCNVLRDDGVTYHQYLNELTYIL---FLKLTEVKDFEEHIPAEYRWRGF 58

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
              + + E+F +   +    +   +  ++                            +++
Sbjct: 59  VEEHDNNEAFERYKKFLVSISGVTTSPSIKEI-------------------------YNN 93

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               L K      + ++   ++ + +     VM +IYE L+ +   E   GA  + TPR 
Sbjct: 94  ASTSLRKPVNFNTLVQSIEKLDWYEEN-DRDVMGDIYESLLEKNAGEKKSGAGQYFTPRP 152

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHH 234
           ++++ T LL          +P +     DP  GT GF+  A  ++               
Sbjct: 153 LINIMTQLL----------APKLGERWNDPAAGTFGFMIAADEYLRSKYENYYALRDKDR 202

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K        G EL  + H + +    +  +ES+           G TL++       +  
Sbjct: 203 KFQKEQAFSGVELVGDAHRLALMNARLHGMESEIIL--------GDTLTEMGKNLNGYDG 254

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K            K GE           S+  + FL H+   L+   +G  
Sbjct: 255 VLANPPFGTK------------KGGEKPTRDDFTFPTSNKQLNFLQHIYRSLK--KDGKA 300

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G    +IRR L++   +  I+ LPT +F+   + T +   +  K
Sbjct: 301 RAAVVLPDNVLFEDGDG---QKIRRDLMDKCDLHTILRLPTGIFYAAGVKTNVLFFTRGK 357

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           TE  +   + I   D+ T++ N G KR           +  Y 
Sbjct: 358 TE--KNNTKGIWFYDMRTNVPNYG-KRTPFTRTAFADFVKAYT 397


>gi|295398847|ref|ZP_06808839.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
 gi|294972911|gb|EFG48746.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
          Length = 360

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 138/386 (35%), Gaps = 57/386 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46
           MT+  G+A  L   +W +A+ L      +++   +L     + L                
Sbjct: 1   MTK--GTATELYQALWTSADVLRSKMDASEYKNYLLGLIFYKYLSDTMLVHSSEMLDEKT 58

Query: 47  -ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNN 99
             L+      RE Y     S     + V    Y       +S       N          
Sbjct: 59  ENLDEALDMYREAYADDEFSEEFQSALVYEMSYRIKPELTFSALMEEINNHTFQREHLQQ 118

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I   S+  + +FED D +S        ++   + ++ K    + L         + 
Sbjct: 119 GLRDIEQSSNVFEDLFEDIDLNSKKLGATPQKQNDTISQVMKALDNLNL--ANYDGDALG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  +  + A +F TP  V  L T + L   +           T+YDPT G+
Sbjct: 177 DAYEYLIGQFAEDSGKKAGEFYTPSQVSTLMTRIALANKED------KKGLTVYDPTMGS 230

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +  +          +   GQEL   T+ +    M +  ++ +     ++ +
Sbjct: 231 GSLLLNASKYSNEA-------STIRYFGQELNTSTYNLARMNMFLHNVDPE-----NQIL 278

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D    +   F   L NPP+  KW   K  ++    +     +G  LP  S  
Sbjct: 279 RNGDTLDADWPQDEPTNFDAVLMNPPYSAKWSAAKGFLD----DPRFASYGV-LPPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVL 360
              FL+H    L+      G+ AIVL
Sbjct: 334 DFAFLLHGYFHLK----NDGKMAIVL 355


>gi|54308990|ref|YP_130010.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium
           profundum SS9]
 gi|46913420|emb|CAG20208.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium
           profundum SS9]
          Length = 500

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 94/410 (22%), Positives = 171/410 (41%), Gaps = 53/410 (12%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +L++  A    N +       FS     ++   LL ++    + I+   DT    +  +I
Sbjct: 89  DLKNLTAPIDKNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DTDERHLFGDI 147

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   S  +  A +F TPR +      +            P +  ++ DP CGTGG
Sbjct: 148 YEQILKDLQSAGN--AGEFYTPRAITKFIVKVT----------DPKLGESIMDPACGTGG 195

Query: 219 FLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           FL  + +HV +        HK       HG E +   H +C   ML+  +E      +  
Sbjct: 196 FLACSFDHVQNNYVKSAGDHKTLQS-QIHGVEKKQLPHLLCTTNMLLHGIE------IPV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K L +  ++    ++NPPFG     ++D +EK           P   +  +
Sbjct: 249 QIKHGNTLAKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNF---------PAEMQTRE 296

Query: 334 GSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + LFL  +   L  P NG  GGRAA+VL    LF       +++I++ L E   +  IV
Sbjct: 297 TADLFLQLIIEILASPVNGQKGGRAAVVLPDGTLF---GEGVKTKIKKMLTEECNLHTIV 353

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQR 449
            LP  +F   T I T +   +  K  +       +   +  + +      K + +  ++ 
Sbjct: 354 RLPNGVFNPYTGIKTNILFFTKGKPTKD------VWFYEHPYPAGVKNYSKTKPMKFEEF 407

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +  L+ + + E+G  SR+   +     ++ +   +  +F LD     + E
Sbjct: 408 QTELEWWGNEEDGFASRI---KNNQAWKVSIDEIIERNFNLDIKNPYQGE 454


>gi|167771559|ref|ZP_02443612.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM
           17241]
 gi|167666199|gb|EDS10329.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM
           17241]
          Length = 495

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 111/559 (19%), Positives = 200/559 (35%), Gaps = 77/559 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVRE 57
           M+E T +   + + +W     L  D     +G  +        L+  +   +P     RE
Sbjct: 1   MSEQTTT---IISKVWGMCGPLRDDGVS--YGDYLEQLTYLIFLKMSDEYAKPPYK--RE 53

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             +  G +  D+     V     Y +   +L   G                         
Sbjct: 54  TGIPTGCNWADMSDLKGVELEEKYKSILKTLGEQG--------------------GTLGK 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F     ++  A +LY+I +     +    ++   V   IYE L+++   +V  GA  +
Sbjct: 94  I-FKGATNKINNAAILYRIVQMIDKEKW--VSMSTDVKGEIYEGLLQKNAEDVKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234
            TPR ++      +           P  ++T+ DP CG+GGFL  A +++ D   ++   
Sbjct: 151 FTPRPLIQAMVKCI----------RPEPMKTVADPCCGSGGFLLAAQSYLTDPQYYNLDR 200

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G E+ P T  + +  + +  +     +     I  G  L  D   G+R
Sbjct: 201 EAKEFLKKEAFRGWEIVPATFKMSLMNLYLHNIGDLYGQVP---ITLGDALLTD--PGER 255

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPP 350
           F Y L+NPPFGKK        E E +  +L          S +  + FL H+   L+   
Sbjct: 256 FDYVLTNPPFGKKSALTFTNEEGEQEGEDLVYNRQDFWTTSSNKQLNFLQHINTLLKA-- 313

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA+V+  + LF G +G     IR+ LLE   +  I+ LPT +F++  +   +   
Sbjct: 314 --TGKAAVVVPDNVLFEGGSGE---TIRKKLLETCDLHTILRLPTGIFYKPGVKANVIFF 368

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             R     R + + +   DL T++    K+  +   D     L+ ++ R N +       
Sbjct: 369 DKRPAGPDR-QTKEVWIYDLRTNMHFTLKQHPMTFGD-----LEDFIQRYNPE------N 416

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           R   +       P           +    +   DI W K   L     L   + + + I 
Sbjct: 417 RHERHETWSEKNPEGRWRRFTAEKILARDKTSLDIFWIKDKSLADLDNLPAPEELARDIM 476

Query: 528 PYGWAESFVKESIKSNEAK 546
               +       + +   K
Sbjct: 477 ENLQSAMDGFSELLATLKK 495


>gi|257094685|ref|YP_003168326.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047209|gb|ACV36397.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 606

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 120/646 (18%), Positives = 211/646 (32%), Gaps = 101/646 (15%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRSAV 55
            +  +L++ I    + L       GD          LP       L+ L+         V
Sbjct: 20  TTRENLSSLIGTARQILRKDKGLNGDVDR-------LPLLTWVMFLKFLDDL-----ETV 67

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYS--------------LSTLGSTNTRNNLE 101
            E+     G        ++         +                 ++          L 
Sbjct: 68  HEEEADLDGKRYQ--PIIEAPYRWRDWAAREDGINGDELLAFIGQEVTVRADGKVGKGLF 125

Query: 102 SYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           SY+          ++       F     R+    LL  I    +GI     +     +S+
Sbjct: 126 SYLRGLAGLGEKGSQREVVANVFKGVQNRMVSGYLLRDIINKINGIHFR-SSEEIHTLSH 184

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE ++R       +   +F TPR VV     +            P +  T+ DP CGTG
Sbjct: 185 LYESMLREMRDAAGDS-GEFYTPRPVVRFMVQVT----------DPKLGETVLDPACGTG 233

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +H+A      +  +        GQE +P  + +    +L+  LE+      + 
Sbjct: 234 GFLVGAYDHIAAQVTTPAEWRKLQRETLFGQEAKPLPYMLVQMNLLLHGLEAPQIAYGNT 293

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             +       ++  G+R    L+NPPFG            E + G    F P   + ++ 
Sbjct: 294 LDR----RINEIGHGERVDVILTNPPFGG-----------EEEVGIKANFPPN-MQTAET 337

Query: 335 SMLFLMHLANKLEL---------PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           + LFL ++  KL +         P   GGRAA+V+ +  LF     +    I+  +L+  
Sbjct: 338 TQLFLQYIMRKLRVVGAPVRGGKPAARGGRAAVVVPNGTLFGDGISAV---IKEEMLKEF 394

Query: 386 LIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  IV LP  +F   T+I   L         ER G    I   ++     R +  K   
Sbjct: 395 RLHTIVRLPQGVFAPYTDIPANLLFF------ERGGPTDTIWYYEMPLPEGRKKYTKTTP 448

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +  D+    L  + +RE G  +  +D+       + V  P       +    A +     
Sbjct: 449 LQFDEFASALAWWDAREEGPQAWKVDFAAKRQAAVDVATPNWQR--AESERNAAIALGKP 506

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
            R +    Q+        + +Q+      +   +++ K  +A+   +      +      
Sbjct: 507 IRGIEQTIQAAANGDKAALQEQLRALKAGQQAHEQAAKVAQAEGDALYWPIYNLDIKNPN 566

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSP 609
                  ADP        I      E E +  L  I+   V EV  
Sbjct: 567 AKAGLEHADP-----KNLIASMRSHETEVMRLLGEIEA-LVTEVQE 606


>gi|255523606|ref|ZP_05390573.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|255512661|gb|EET88934.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
          Length = 473

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 94/473 (19%), Positives = 170/473 (35%), Gaps = 82/473 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   + + +W     L        + + +        L+         +    E+ +  G
Sbjct: 2   NTQEIVSKLWNLCNVLRD--DGITYHQYVTELTYILFLKM-------AKETGAEEKIPEG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S   +    FY                      +    +      +     S 
Sbjct: 53  YRWDDLKSKNGIELKKFYK-------------------ELLNYLGEKGTGTVQQIYQGSA 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +++   L KI     G++ +  +  +  + N+YE L+ +  SE   GA  + TPR +
Sbjct: 94  TN-IDEPKNLEKIITTIDGLDWY--SAKEEGLGNLYEGLLEKNASEKKSGAGQYFTPRVL 150

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           + +   L+           P       DP  GT GF+  A +++     ++        +
Sbjct: 151 IDVMVKLI----------DPKPGEKCNDPAAGTFGFMIGADHYLKQKYDNYFDLDTDLQE 200

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  ETH + +   ++  +E         NI  G TL+ +    K     
Sbjct: 201 FQRTKAFSGCELVHETHRLALMNAMLHDIEG--------NIILGDTLTNEGKKMKDLDVV 252

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG K            K GE           S+  + FL H+   L+   +G  R
Sbjct: 253 LSNPPFGTK------------KGGERATRDDLTFMTSNKQLNFLQHIYRSLKA--DGKAR 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G   ++IR  L++   +  I+ LPT +F+   + T +   +   T
Sbjct: 299 AAVVLPDNVLFQEGDG---TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGTT 355

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466
           +  +   + +   DL T+++N G K   + +      +  Y   +RE  K  R
Sbjct: 356 D--KDNTKEVWFYDLRTNMQNFG-KTNPLKESHFDDFVKAYKAENREEVKDER 405


>gi|261820962|ref|YP_003259068.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium wasabiae WPP163]
 gi|261604975|gb|ACX87461.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium wasabiae WPP163]
          Length = 529

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/585 (18%), Positives = 202/585 (34%), Gaps = 97/585 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPVG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL++ +      FY      L  LG      NL   I               F + 
Sbjct: 54  YRWDDLKARIGQDQLQFY---RKLLVELGQD--ERNLVQAI---------------FHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              +E+   L ++      ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTIEQPKQLTELVSYMDALDWYNGSKGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKLQTNDLEDLDTDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D       H
Sbjct: 204 QDFQIRRAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPLAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FIHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L+    +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGRG---TDIRRDLMNKCRLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++ + G KR    D   +    ++         R  G+
Sbjct: 361 AVSNPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFGDQHLQPFEQVFGDDPHGLSPRSEGE 419

Query: 464 F------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +      S + D          +      +F  +    A+ ++ DI+W K      +  L
Sbjct: 420 WSFNAEQSDIADSEENKNTDQHLATSRWRTFSREWIRTAKSDSLDISWLKDKDSIDADNL 479

Query: 517 -----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                   + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 480 PEPDVLAAEAMTELVQALGELDTLMRELGAGDEADAQRTLLNEAF 524


>gi|21227771|ref|NP_633693.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906175|gb|AAM31365.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 498

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/537 (19%), Positives = 176/537 (32%), Gaps = 69/537 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+E T   +S+ + +W     L  G   + D+ + +     L+  E   +P  +      
Sbjct: 1   MSENT---SSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKMAEEYRKPPYN------ 51

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFED 117
                              +     EY+   L           Y     +      +   
Sbjct: 52  ------------------RNIGIPEEYTWDRLKQQRGAELDTHYRELLEELGQKPGMLGQ 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               S   ++    +LYKI             V       IYE L+++   +   GA  +
Sbjct: 94  IFLKSQ-NKVSDPAMLYKIIDMIDKESWVMMGV--DTKGEIYEGLLQKNAEDTKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SH 233
            TPR ++ +    L           P  ++T+ DP CGTGGF   A + +          
Sbjct: 151 FTPRPLIKVMVQCL----------QPEPMKTIGDPCCGTGGFFLAAYDFLTSHHRLDRDQ 200

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G E+   T  + +  M +  +      D    I     L  D   G R+ 
Sbjct: 201 SRFLKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFGKK        E E +  EL           S+  + FL H+   L+     
Sbjct: 256 YILTNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWTTTSNKQLNFLQHIHTILKT---- 311

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG+AA+VL  + LF G AG     IR+ LLE   +  I+ LPT +F+   +   +     
Sbjct: 312 GGQAAVVLPDNVLFEGGAGE---TIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFE- 367

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K   +    + +   D  T++ +  KK   +        +  Y      +F      R 
Sbjct: 368 AKPASKEPWTKEVWIYDYRTNVHHTLKK-NPLKYSDLEDFIRCYN--PENRF-----NRK 419

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             +         R     +     +   DI W K   L     L     +  +I   
Sbjct: 420 ETWSEESPEGRFRKFSYDEIIARDKTNLDIFWLKDKSLADLDNLPDPDILANEIIEN 476


>gi|256617125|ref|ZP_05473971.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
 gi|256596652|gb|EEU15828.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
          Length = 304

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 34/312 (10%)

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T+ +    +++  ++++      
Sbjct: 1   MGSGSLMLNVRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----E 48

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T +   F   + NPP+   W  D   ++    +    R+G  L   
Sbjct: 49  MNLRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD----DSRFNRYGK-LAPK 103

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 104 SKADFAFLLHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVI 156

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++
Sbjct: 157 GMPANLFFGTSIPTTVIVLKKNR---QNRDVLFIDASREFVKGKN----QNKLSEENIQK 209

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           IL+ Y  R++  K++ +  +         +  P  +    ++  +  +      +K+   
Sbjct: 210 ILENYAERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQE 269

Query: 511 HQSFWLDILKPM 522
            Q    ++L+ +
Sbjct: 270 QQVLEKELLEAI 281


>gi|57790478|gb|AAW56179.1| Cj81-118 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 314

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 101/324 (31%), Positives = 163/324 (50%), Gaps = 31/324 (9%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP--------------DTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F   +++                 + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+   +   +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQGTWL---IYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEK 307
            D     +F + LSNPP+GK WE 
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWEN 314


>gi|188586602|ref|YP_001918147.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351289|gb|ACB85559.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 479

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 98/503 (19%), Positives = 176/503 (34%), Gaps = 83/503 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L  D     + + +   T +  L+   E     V           
Sbjct: 2   TNQEIIQKLWSLCDVLRDDGVT--YHQYVTELTYILFLKMMKEKETEEVI-------PKE 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              +S     G   YN   Y    L    ++N L S I               + +    
Sbjct: 53  YRWDSLTTKHGMELYN--HYRQLLLDIGQSKNKLLSQI---------------YMNATTN 95

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +++   L KI ++   ++ +  +  +  +  +YE L+ +  +E   GA  + TPR ++  
Sbjct: 96  IDEPKNLEKIIQSIDRLDWY--SAREEGLGALYEGLLEKNANETKTGAGQYFTPRPLIDT 153

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              L            P       DP  GT GF+  A  HV      +        +   
Sbjct: 154 IVELT----------DPEPGERCNDPAAGTFGFMIAADRHVRKKTDDYFSLSQKEAEFQV 203

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  + H + +   ++  LE +           G TLS+     K +   L+N
Sbjct: 204 KEAFTGCELVKDVHRLGLMNAMLHELEGEIIL--------GDTLSEAGKNLKNYDVVLTN 255

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K+GE           ++  + FL H+   L+  PNG  RAA+
Sbjct: 256 PPFGTK------------KSGERPTRDDLTYTTTNKQLNFLQHIYRSLK--PNGKARAAV 301

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF    G+   +IR  L+E   +  I+ LPT +F+   + T +   +  +T+  
Sbjct: 302 VLPDNVLFEDNTGA---KIRNDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFTRGQTD-- 356

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +   + +   DL T++ + G K   +  D     +  Y         + +D       R 
Sbjct: 357 KDNTKEVWVYDLRTNMESLG-KTNPLRKDHFDDFIKAY---------KAVDRTKIKNERF 406

Query: 479 KVLRPLRMSFILDKTGLARLEAD 501
                  +    D   L  ++ +
Sbjct: 407 NCFTREDIRKKNDSLDLGLIQDE 429


>gi|20090959|ref|NP_617034.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
 gi|19916043|gb|AAM05514.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
          Length = 498

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 162/474 (34%), Gaps = 64/474 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+E T   +S+ + +W     L  G   + D+ + +     L+  E   +P  +      
Sbjct: 1   MSENT---SSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKMAEEYRKPPYN------ 51

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFED 117
                                    +Y+   L           Y     +      +   
Sbjct: 52  ------------------RDIGIPEKYTWDNLKQQRGAELDTRYKELLEELGQKPGMLGQ 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F     ++    +LYKI             V       IYE L+++   +   GA  +
Sbjct: 94  I-FLKAQNKVSDPAMLYKIIDMIDKESWVMMGV--DTKGEIYEGLLQKNAEDTKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----H 233
            TPR ++ +    L           P  ++T+ DP CGTGGF   A + +          
Sbjct: 151 FTPRPLIKVMVQCL----------RPEPMKTIGDPCCGTGGFFLAAYDFLTSNYRLDREQ 200

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G E+   T  + +  M +  +      D    I     L  D   G R+ 
Sbjct: 201 SRFLKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFGKK        E E +  +L           S+  + FL H+   L+     
Sbjct: 256 YILTNPPFGKKSSMTFTNEEGEQEKEDLTYNRQDFWTSTSNKQLNFLQHIHTILKT---- 311

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG+AA+VL  + LF G AG     IR+ LLE   +  I+ LPT +F+   +   +     
Sbjct: 312 GGQAAVVLPDNVLFEGGAGE---TIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFE- 367

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            K   +    + +   D  T++ +  KK   +        +  Y       FSR
Sbjct: 368 AKPASKNPWTKEVWIYDYRTNVHHTLKK-NPMKYSDLEDFIKCYN--PEIHFSR 418


>gi|168262424|ref|ZP_02684397.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205348666|gb|EDZ35297.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 489

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 172/457 (37%), Gaps = 68/457 (14%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----------TRNNLESYI----ASFSD 109
              +    ++   Y       Y      + N             ++L   +    A    
Sbjct: 40  DAQEQALEIEQEKYRLPMPERYLWRNWAADNEGITGDKLLAFVNDDLFPTLKDLPAQIDI 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +       FS     ++   LL ++    + I+    +    +  +IYE ++R   + 
Sbjct: 100 NPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTRAS-ERHLFGDIYEQILRDLQAA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A +F TPR V       +           P +  ++ DP CGTGGFL  A +HV +
Sbjct: 159 GN--AGEFYTPRAVTRFMVERV----------DPKLGESIMDPACGTGGFLACAFDHVKN 206

Query: 230 CGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
             +H      L     HG E +   H +C   ML+  +E      +   I+  +TL+K L
Sbjct: 207 HYAHTVTDHQLLQRQIHGVEKKQLPHLLCTTNMLLHGIE------VPVQIRHDNTLNKPL 260

Query: 287 FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +  ++    ++NPPFG     ++D +EK           P   +  + + LFL  +   
Sbjct: 261 SSWDEQMDVIITNPPFGG---TEEDGIEKNF---------PSDMQTRETADLFLQLIIEV 308

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIA 404
           L       GRAA+VL    LF       +++I++ L E   +  IV LP  +F   T I 
Sbjct: 309 L----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIVRLPNGVFNPYTGIK 361

Query: 405 TYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           T L   +  +  +       I   +  + +      K + +  ++ +  +D + +  +G 
Sbjct: 362 TNLLFFTKGQPTKD------IWFYEHPYPAGVKNYSKTKPMKFEEFQAEIDWWGNEADGF 415

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            SR+         ++ +   +  +F LD     ++E 
Sbjct: 416 ASRV---ENEQAWKVSIDEVIARNFNLDIKNPHQVET 449


>gi|124006763|ref|ZP_01691594.1| type I restriction enzyme [Microscilla marina ATCC 23134]
 gi|123987671|gb|EAY27371.1| type I restriction enzyme [Microscilla marina ATCC 23134]
          Length = 539

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/515 (16%), Positives = 189/515 (36%), Gaps = 71/515 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAV----------REKYLAFGGSNIDLESFVKVA 76
              +F  +I    L + L          +           E   A    + +L      A
Sbjct: 30  DGNEFK-IITQTFLYKFLNDKFIYEVKKLDEGIANADKPLEALAATPAQDYELLLLQLPA 88

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-------------FEDFDFSST 123
             +    +    +     N  N  +S+ A+  D AKA                 FD  S 
Sbjct: 89  NTARLAPAHLIPALYARQNEANFADSFDATLQDIAKANNEIFSVKTGQDERIVLFDNLSR 148

Query: 124 IARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++      I          H         + I+E+LI+ + +       ++ TP  
Sbjct: 149 YVTDKRDDFCRAIVNKLVDFSFEHIFEEKFDFYATIFEYLIKDYNTNSGGKYAEYFTPHA 208

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  +    ++  + +          T YDP+ G+G  L +  + + +             
Sbjct: 209 VAKIMARCMVHGEVSNV--------TCYDPSAGSGTLLMNLAHQIGE--------NRCTI 252

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSN 298
           + Q++  ++  +    +++  L          NI +G+T+S+         ++F Y +SN
Sbjct: 253 YSQDISQKSSGLLRLNLILNDLVHSL-----PNIVKGNTISEPYHKEGNALRQFDYIVSN 307

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPN 351
           PPF   +   +DA++         RF  G+PK+ +         +LFL H+ + L+    
Sbjct: 308 PPFKLDFSDMRDALDT---KANRERFFAGVPKVPNKKKESMAIYLLFLQHIMHSLK---- 360

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AAIV+ +  +        + +IR+ L++  ++  ++++P+++F  T     +  L 
Sbjct: 361 PNGKAAIVVPTGFITAQS--GIDKKIRQRLVDERMLAGVISMPSNIFANTGTNVSIVFLD 418

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
                  + +V LI+A+ L   ++    +R +++ ++  QI++ + +++    FS ++ Y
Sbjct: 419 R----ANKDEVVLIDASGLGEKVKEGKSQRTVLSTEEEDQIIETFNAKKELDDFSVIVSY 474

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
                +   +         ++   +         +
Sbjct: 475 DDIAAKNYSLSAGQYFEVKIEYVDITPEAFATKMK 509


>gi|13357655|ref|NP_077929.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170762197|ref|YP_001752181.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|183508500|ref|ZP_02689853.2| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|11357066|pir||E82933 type I restriction enzyme M protein, truncated homolog UU098
           [imported] - Ureaplasma urealyticum
 gi|6899053|gb|AAF30504.1|AE002110_2 type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827774|gb|ACA33036.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|182675928|gb|EDT87833.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 348

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 155/375 (41%), Gaps = 34/375 (9%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L+  + +   +   +F TP++V  L   L L   +   K+    I  +YDP 
Sbjct: 1   MFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDPC 60

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L            + K+   +  +GQE+   T+ +    M +  +  D      
Sbjct: 61  CGSGSLLLK----------YAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDK----- 105

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +I+ G TL        + F   +SNPP+  KWE   + +    +   + +  P      
Sbjct: 106 FDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLANDERFHVTQLAP----KG 161

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAIV 391
                F++H+ + L    +  G AAIV+    L+   A   E +IR++L    +++++++
Sbjct: 162 KADFAFVLHILHNL----SSSGTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDSVI 214

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP +LFF T+I+T + +L   K        +  ++A+  +         +  + +   +
Sbjct: 215 QLPDNLFFGTSISTCIIVLRKNKNNNDNANGILFVDASKEFVK----SGIKNKLTNANIK 270

Query: 451 QILDIYV-SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I+D     +E   FS+++       +   +     +        +     ++  +++  
Sbjct: 271 KIVDTIRFKKEVTYFSKLVSREEVKNKNYNLSVNTYVEKEDTSEKIDIKLLNMQIKEIVA 330

Query: 510 LHQSFWLDILKPMMQ 524
             +    +I + +++
Sbjct: 331 KIEKLRKEIDEIVLE 345


>gi|281421792|ref|ZP_06252791.1| type I restriction-modification system, M subunit [Prevotella copri
           DSM 18205]
 gi|281404150|gb|EFB34830.1| type I restriction-modification system, M subunit [Prevotella copri
           DSM 18205]
          Length = 477

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 101/528 (19%), Positives = 179/528 (33%), Gaps = 76/528 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  +L   +W  A  L G      F   I   T L  L+   E       +  +
Sbjct: 1   MAKNITTEQTLTKKVWNLATTLAGVGVG--FTDYITQLTYLLFLKMDDENMELFGEDSSI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    DL       GY      E +L  L              S  D+         +
Sbjct: 59  PVGYRWKDLTGL---DGYDLVKQYESTLKLL--------------SQQDDLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      L           P +  T+ DP CGTGGFL  A +++ +   +      L
Sbjct: 156 RPLIKAMVDCL----------QPQIGETVCDPACGTGGFLLAAYDYMKEQSQNRDKLDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG ++ P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 NNKALHGNDITPLVVTLASMNLYLHGIGTDHSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     +    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVEINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IR+ LL +  +  I+ LPT +F+   +   +   +  +  +
Sbjct: 304 VVLPDNVLFEGNAGE---TIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFTKGQPTK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                  I   D  T +++     + +        +  Y + +        D       R
Sbjct: 361 N------IWFYDYRTGVKHTLATNK-LERHHLDDFVTCYHAEDINARKETYDADKNPSGR 413

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +    +      DKT L     DITW K     +   L  L   +++
Sbjct: 414 WR-KYSIDEIMARDKTSL-----DITWIKQGNDTEDLPLSQLMSNIKE 455


>gi|309811650|ref|ZP_07705429.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
 gi|308434451|gb|EFP58304.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
          Length = 500

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 111/559 (19%), Positives = 191/559 (34%), Gaps = 84/559 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +A  L + +W   + L  D     ++ + +     L+  +                   
Sbjct: 2   TTARQLVDKLWSYCDVLRDDGVGVIEYTEQLTYLLFLKMAD------------------- 42

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSS 122
                E   +          EYS   L      +    Y    +  A+   +     F  
Sbjct: 43  -----ERAKRPLKAERIIPEEYSWDRLVQATGNDLELEYTRILNGLAREEGVIGTI-FRK 96

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              R+     L ++  +  G E +       +  + YE L+ +  S+   GA  + TPR 
Sbjct: 97  AQNRVTDPAKLRRLVVDLIGKE-NWSQTGTDINGDAYEGLLAKGASDKGSGAGQYFTPRA 155

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------GSHHKI 236
           ++             +    PG+   + DP CGTGGFL  A  H +           H +
Sbjct: 156 LIQAI----------VDVVDPGVDDRVTDPACGTGGFLLVAHEHASANVNEMTPNQRHNL 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 HG EL   T  +    +L+  + S     L        +LS D  TG+R+   L
Sbjct: 206 QHSFA-HGVELVDGTARLAAMNLLLHGMGSSNGDSLIHVR---DSLSAD--TGERWSVVL 259

Query: 297 SNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SNPPFG+K        + +E ++         +   S+  + F+ H+   LE      GR
Sbjct: 260 SNPPFGRKSSVTMMGADGRESRDDREIERQDFVATTSNKQLNFVQHIMTILET----NGR 315

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF G AG     IRR LL +  +  ++ LPT +F+   I   +     +  
Sbjct: 316 AAVVLPDNVLFEGGAGE---TIRRKLLNDYDLHTMLRLPTGIFYAQGIKANVLFFDRKMA 372

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SRENGKFSRMLDY 470
              R   Q +   DL T+ ++   K+  +        +D Y      +R+  +  +   Y
Sbjct: 373 RPGRPWTQKLWVYDLRTN-KHFTLKQNPLTRADLDDFVDNYRVGERENRKESERWKAFTY 431

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                R                    +   DITW +   L     L     + ++I    
Sbjct: 432 DEIVARD-------------------KANLDITWLRDESLEDLASLPSPDVIAREIVEDL 472

Query: 531 WAESFVKESIKSNEAKTLK 549
            A     E++ +   + L 
Sbjct: 473 TAALAEFEAVATALEEQLG 491


>gi|295697501|ref|YP_003590739.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
 gi|295413103|gb|ADG07595.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
          Length = 502

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 169/466 (36%), Gaps = 63/466 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAF 62
            +  SLAN IW+  + L  D       + I  L     LR L+   E       E     
Sbjct: 5   QTRESLANEIWRACDILRRDNNCGGVMEYIEHLAWLLFLRFLDAQEEEW-----ETQAKL 59

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFS 121
            G             +S + T ++    L        L  Y+ S   D  +         
Sbjct: 60  AGRPY-TRILDGDLRWSAWATKDWPADRLLE-FVHGRLIPYLQSLGGDPLRETIRSVFAE 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             +        L  +    +GI+ H        +S +YE L+RR GS  +  A +F TPR
Sbjct: 118 RNVIVCASGYNLKDVLTIINGIDFHSQD-DIFTVSQVYEELLRRLGS-ENRLAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPP 238
            VV     L+          +P +  T+YDP CGT GFL  A   +         HK   
Sbjct: 176 PVVRFMVELV----------APQIGETVYDPACGTCGFLAQAYLFMIKSERTLEDHKTLQ 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQE +P    + +  M++  + +       + +++ +         +R+   L+N
Sbjct: 226 EKTFFGQEKKPLPALLGLMNMVLHGVTA------PRVMRRNTLEENIRNVTERYDVVLTN 279

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELPPNGGGRA 356
           PPFG                G  GR       +  +   +LFL H+  KL+  P  G R 
Sbjct: 280 PPFG----------------GTEGRHIQANFPVQATATELLFLQHIMKKLK--PRDGARC 321

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
            +V+    LF G A    ++++R LLE   +  +V+LP   F   +++ T L        
Sbjct: 322 GMVVPEGTLFRGGA---FADVKRVLLEQFNLHTVVSLPPGTFAPYSDVKTALLFF----- 373

Query: 416 EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            ER G    I   +L       +  K   I D+   +   ++ + +
Sbjct: 374 -ERPGPTTDIWYYELPLPEGLKKFSKGSPIQDEHFEEARRLWKAWD 418


>gi|75766307|pdb|2AR0|A Chain A, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
 gi|75766308|pdb|2AR0|B Chain B, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
          Length = 541

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 182/549 (33%), Gaps = 92/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 4   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLK------XCKETGQEAEYLPEG 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG  + +                      F + 
Sbjct: 56  YRWDDLKSRIGQEQLQFY---RKXLVHLGEDDKK-----------------LVQAVFHNV 95

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   +  +  N   ++ +            + YE L+++  +E   GA  + TPR
Sbjct: 96  STTITEPKQITALVSNXDSLDWYNGAHGKSRDDFGDXYEGLLQKNANETKSGAGQYFTPR 155

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 156 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 205

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 206 QDFQIHRAFIGLELVPGTRRLALXNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 263

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F  H+   L      G
Sbjct: 264 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFXQHIIETLHP----G 305

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L +   +  I+ LPT +F+   + T +   +  
Sbjct: 306 GRAAVVVPDNVLFEGGKG---TDIRRDLXDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 362

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T+  + G KR    D+  +    +Y         R  G+
Sbjct: 363 TVANPNQDKNCTDDVWVYDLRTNXPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 421

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWL 516
           +S       + D          +       F  +    A+ ++ DI+W K      +  L
Sbjct: 422 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 481

Query: 517 DILKPMMQQ 525
                +  +
Sbjct: 482 PEPDVLAAE 490


>gi|289664156|ref|ZP_06485737.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 514

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 199/568 (35%), Gaps = 79/568 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   +   +W   + L       ++   +    LL  ++   E  ++    E  L  G  
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFVKMEYEQVQNNPNFEHKLPEGSR 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             DL+             S+  L+ L   + R  L +   S      AI+ D        
Sbjct: 60  WPDLK-------------SKSGLNLL--NHYRQMLLNLGKSSDPMIAAIYAD-----AQT 99

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++ 
Sbjct: 100 RLKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALID 157

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HK 235
                +           P +   + DP  GT GFL  A  ++                  
Sbjct: 158 SIIHCV----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPGVTAKKRS 207

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  +  +    +    + G++L          +  
Sbjct: 208 FQREKAFVGMELVPGTRRLALMNCLLHGMNGEGAGPI----RLGNSLGIAGRDLPPANII 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG              K G          K S+  + FL H+   L+     GGR
Sbjct: 264 LSNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGR 307

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +        
Sbjct: 308 AAVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSA 364

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
               +  G  Q     DL +++ + G KR        +   D Y +  NG   R  +   
Sbjct: 365 ANPRQDTGCTQATWVYDLRSNMPSFG-KRTPFGPTHLKPFEDAYGTDPNGASPRTDEGEE 423

Query: 473 FGYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             +R     +       L +S++ D   +   ++      L+    +   + L+ +   +
Sbjct: 424 GRFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALM 482

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASK 554
              G  +  +++     E   L+V + +
Sbjct: 483 QALGAGDEALEQKRLLAEVMGLEVTSGE 510


>gi|29349926|ref|NP_813429.1| putative type I restriction enzyme StySJI M protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|81842076|sp|Q89Z59|T1M_BACTN RecName: Full=Probable type I restriction enzyme BthVORF4518P M
           protein; Short=M.BthVORF4518P
 gi|29341837|gb|AAO79623.1| putative type I restriction enzyme M.BthVORF4518P [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 472

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 106/509 (20%), Positives = 176/509 (34%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   + +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNSSTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    DL +F    G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWADLIAF---DGLDLVKQYEETLKLL--------------SELDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R       + D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVE-----IYDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+      DKT L     DITW K
Sbjct: 409 WR-KYPVDEIIARDKTSL-----DITWIK 431


>gi|281424445|ref|ZP_06255358.1| type I restriction-modification system, M subunit [Prevotella oris
           F0302]
 gi|281401431|gb|EFB32262.1| type I restriction-modification system, M subunit [Prevotella oris
           F0302]
          Length = 473

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/526 (19%), Positives = 179/526 (34%), Gaps = 79/526 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      +   +   T L  L   ++     + E+  
Sbjct: 1   MATNISTEQSLTKKVWNLATTLSGQGIG--YTDYVTQLTYLLFL--KMDAENEKLFEETS 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +         + +++ G       E +L  L              S  DN         F
Sbjct: 57  SIPE-GYRWSNLIELDGLDLIEQYEKTLKIL--------------SEQDNLIGTI----F 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVISMIDEEQWL--VMDGDVKGAIYEGILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +           P +  T+ DP CGTGGFL  A + +            L
Sbjct: 156 RPLIQAIVDCV----------QPKIGETVCDPACGTGGFLLAAYDCMKQQSQDKDKREFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D      ++  +                 L+
Sbjct: 206 NNKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIACEDSLE-------KEPDTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHIMLMLKA----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IR+ LL +  +  I+ LPT +F+   +   +      +  +
Sbjct: 304 VVLPDNVLFEGGAGE---TIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFVKGQPTK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                  I   D  T +++     ++     RR  LD +V+       R+  Y+    R 
Sbjct: 361 D------IWFYDYRTDVKHTLATNKL-----RRHHLDDFVASYTAN-PRVETYKEDTARD 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            +  +      + D     +   DITW K     + F LD L   +
Sbjct: 409 GRWRKY----TVEDIIARDKTSLDITWIKAGGEEEQFTLDELMTNI 450


>gi|153808177|ref|ZP_01960845.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185]
 gi|149129080|gb|EDM20296.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185]
          Length = 472

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 105/509 (20%), Positives = 172/509 (33%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNATEQSLTKKVWSLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    DL +     G       E +L  L              S  DN         +
Sbjct: 59  PSGYQWADLIAL---DGLDLVKQYEETLKLL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +           P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAMVDCI----------HPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGVGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLTLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL +  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLRDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVET-----YDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+    + DKT L     DITW K
Sbjct: 409 WR-KYPVHEIIVRDKTSL-----DITWIK 431


>gi|119357295|ref|YP_911939.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354644|gb|ABL65515.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 495

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/461 (20%), Positives = 169/461 (36%), Gaps = 57/461 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +S+ + +W     L        +G  +   T L  L+ A E TR           
Sbjct: 1   MTNTPSSIVSKVWSFCHVLRDSGVS--YGDYLEQLTFLIFLKMADEYTRP---------- 48

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                          +    SEY+   L +         Y     D      +     F 
Sbjct: 49  -----------PYNRTIDIPSEYTWPKLKAKRGAELEVLYARLLRDLGQKPGMLGQI-FL 96

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               ++    +LYK+             +   V   IYE L+ +   +   GA  + TPR
Sbjct: 97  KAQNKIADPAMLYKVIDMIDKESW--VMMGADVKGEIYEGLLEKNAEDTKSGAGQYFTPR 154

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            ++ +    +           P   +T+ DP CGTGGF   A + +       +     +
Sbjct: 155 ALIEIMVKCV----------RPEPRKTIGDPACGTGGFFLKAYDFITTRYKLDRDEKEFL 204

Query: 242 PH----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            H    G E+ P T  +C+  M +  +      +L  N+   ST +     G R+ Y L+
Sbjct: 205 KHRTFGGNEIVPGTRRLCLMNMFLHNIG-----ELDGNVAVSSTDALVADNGVRYDYVLT 259

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFGKK        E+E +   L           ++  + FL H+   L++     G+A
Sbjct: 260 NPPFGKKSSMTFTNDEEEQEKESLVYNRQDFWAITANKQLNFLQHIHTILKVY----GQA 315

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF G AG     +R+ LLE   +  I+ LPT +F+   +   ++        
Sbjct: 316 AVVLPDNVLFEGGAGE---LVRKKLLETTELHTILRLPTGIFYAQGVKANVFFFDVM-PA 371

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           ++    + +   D  T++ +  KK   +     ++ ++ Y 
Sbjct: 372 DKDPWTREVWFYDYRTNVHHTLKKSP-LKASDLQEFVECYN 411


>gi|148927366|ref|ZP_01810897.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
 gi|147887265|gb|EDK72726.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
          Length = 675

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 176/487 (36%), Gaps = 66/487 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           S+ SL   +W     L  D     +G     I     L+  +   +P  +          
Sbjct: 2   SSLSLVQKVWNYCNLLRDDGLS--YGDYLEQITYLLFLKMADEYSKPPFN---------- 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                        G        + SL  L  +N   +    + +       +     F +
Sbjct: 50  ------------RGTHIPTDINWQSLRNLTGSNLEAHYIEVLQNLGKQP-GMLGQIYFKA 96

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              R++    L+++     G       V   V   IYE L+ +F S+   GA  + TPR 
Sbjct: 97  Q-NRIQNPAQLHRLVGLIDGETWVGLDV--DVKGEIYEGLLEKFASDTKTGAGQYFTPRP 153

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++   T  L           P   +T+ D   GTGGF     +++A+    +K     + 
Sbjct: 154 LIQAMTECL----------RPEPSKTMADFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLK 203

Query: 243 H----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +    G E+ P T  +C+  + +  +      D    I    +L+ D  +GKRF Y L N
Sbjct: 204 YKTFTGNEIVPATARLCLMNLFLHNIGD---MDSKPPIHLTDSLASD--SGKRFDYILMN 258

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFGKK        +       L           S+  + F+ H+ ++L++     G+AA
Sbjct: 259 PPFGKKSSITVSNEDGTQSKESLTYERQDFWTTTSNKQLNFVQHICSQLKV----DGKAA 314

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +++  + LF G AG     IR+ LL+   I  I+ LPT +F+   +   +    NR    
Sbjct: 315 VIVPDNVLFEGGAGE---TIRKKLLQTTEIHTILRLPTGIFYANGVKANVIFFDNR-PAS 370

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRT 472
           +  + + +   D+ T+     K+++ + +      +  Y       R   +  +   Y  
Sbjct: 371 KEVQTKDVWVYDMRTNQHFTLKEKK-LANADLADFIKCYNPDNRHQRSETERFKKFTYDE 429

Query: 473 FGYRRIK 479
              R   
Sbjct: 430 VVTRDKT 436


>gi|257463919|ref|ZP_05628305.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
 gi|317061446|ref|ZP_07925931.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
 gi|313687122|gb|EFS23957.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
          Length = 475

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 98/470 (20%), Positives = 170/470 (36%), Gaps = 79/470 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   + ++   +     L+            + E Y      
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAYRW---- 57

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               ++ V   G S  N  + +L  LG           +               + +   
Sbjct: 58  ----KTLVGYEGISLKNNYQQALLDLGKQ---------LGQLG---------IIYRNAQT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR ++ 
Sbjct: 96  RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------- 235
               ++           P +  T+YDP  GT GF+ +A  ++      +           
Sbjct: 154 SIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRKISQDYYGTAENPISEE 203

Query: 236 --IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                  V    EL  +TH + +   L+  +E         N  QG TLS+      RF 
Sbjct: 204 VSQKYKKVFSACELVQDTHRLGMMNALLHGIEG--------NFLQGDTLSEFGKQFSRFD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K            K GE       +   S+  + FL  +   L +   G 
Sbjct: 256 IILSNPPFGTK------------KGGERATRDDLVYATSNKQLNFLEVIYRSLNV--TGK 301

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+VL  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +  
Sbjct: 302 ARAAVVLPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            ++      + I   DL T++ + G K   ++ +   +    +  RE  +
Sbjct: 359 TSD--TNNTKEIWYYDLRTNMPSFG-KTSPLSKEHFEEFERSFEKREEKE 405


>gi|241762635|ref|ZP_04760707.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372773|gb|EER62485.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 487

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 100/533 (18%), Positives = 181/533 (33%), Gaps = 86/533 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVIL---PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     + + +        L+ LE   E  + A         
Sbjct: 3   TTTDIVAKLWSLCNVLRDDGVT--YNEYVTELTYLLFLKMLE---ETEKEARL------- 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                                E+  S L      + L+ Y A   +   AK       F 
Sbjct: 51  -------------------PEEWRWSLLAKREGLDQLDYYKAMLLELGKAKDKLVSAIFI 91

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               RL K   L  +  N   ++    +  +  + N+YE L+ +  S+   GA  + TPR
Sbjct: 92  DAQTRLRKPTNLKALTSNIDQLDWF--SAREEGLGNLYEGLLEKNASDKKSGAGQYFTPR 149

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     L+           P     + DP  GT GFL  A  ++ D            
Sbjct: 150 PLIDCIVRLM----------RPQAGEVIQDPAAGTAGFLVAADRYIKDHTDDLYTLTKEQ 199

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P+TH + +  +L+  +E          ++   TLS D     + +
Sbjct: 200 ASFQRHNAFCGAELVPDTHRLSMMNLLLHGIEG--------GVENIDTLSPDGEALPKAN 251

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG K    +          +           S+  + F+ H+   L    + G
Sbjct: 252 LILTNPPFGTKKGGGRPTRSDFSITAD----------TSNKQLAFVEHIVRAL----SPG 297

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF    G     +R WL++   +  I+ LPT +F+   + T +      
Sbjct: 298 GRAAVVIPDNVLFEDNTG---RRLRTWLMDLCDMHTILRLPTGIFYAQGVKTNVLFFQRG 354

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K++  +G  + +   D+  ++   G K R +           Y +  NG   R       
Sbjct: 355 KSD--KGNTKAVWFYDMRANMPAFG-KTRPLTVADFADFEKAYGAEANGGAKRRDGGEDS 411

Query: 474 GYRRIKVLRPLRMSFILDKT--GLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +R+         +  LD +      +EA+ T  +   +  +    +   + +
Sbjct: 412 RWRKFDRAAIAERNDNLDISWLRDTEVEAEKTLTEPEDIAAAIIGHLKAALDE 464


>gi|325678123|ref|ZP_08157755.1| putative type I restriction-modification system, M subunit
           [Ruminococcus albus 8]
 gi|324110179|gb|EGC04363.1| putative type I restriction-modification system, M subunit
           [Ruminococcus albus 8]
          Length = 542

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/522 (15%), Positives = 174/522 (33%), Gaps = 56/522 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L          + ++  +     I      +      ++T   
Sbjct: 28  DGNEYK-IITQVFLYKYLNDKFGYEIKKLDKRIASAEKWEIAYSELSEDEREDLFDTMNP 86

Query: 84  --SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKI-- 136
                +   L S       +       D       D +   FS+   +  K  L  ++  
Sbjct: 87  DIPRLNPEHLISHLWNQQAKGDFDLIFDQTMIDIADKNIDIFSTQTTQNTKIPLFERLTQ 146

Query: 137 ---------------CKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                                              + I+E+LI+ + +       ++ TP
Sbjct: 147 YVTDEAQRAPFARALVDKLVNFSFEETFSEHYDFFAAIFEYLIKDYNTAGGGKYAEYYTP 206

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  +   LL+  D  L           YDP+ GTG  L    + + +           
Sbjct: 207 HAIATIMARLLVGDDADLHNIE------CYDPSAGTGTLLMALGHQIGE--------DRC 252

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNP 299
               Q++   ++ +    +++  L S     +  +        S D  + + F Y +SNP
Sbjct: 253 TIFAQDISQRSNKMLKLNLILNGLVSSLDHAIQGDTLVAPYHKSDDGQSLRTFDYVVSNP 312

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   +   ++ +          RF  G+PK       SM         +       G+ 
Sbjct: 313 PFKMDFSDTREKIAAMP-----ARFWAGVPKVPAKKKESMAIYTCFIQHVVNSLKKTGKG 367

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  L      S E  + + L+E+ ++   V++P+++F  T     +    N +T 
Sbjct: 368 AIVVPTGFLTAKS--SVEGAVLKKLVEDHIVYGAVSMPSNVFANTGTNVSVLFFDNSRTA 425

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
           +R   V LI+A+ L    ++   ++R +  ++  +I+  + ++E    FS  + Y     
Sbjct: 426 DR---VVLIDASKLGEEYKDGNLQKRRLRPEEIEKIITTFRNKEAVDDFSVAVTYEEIIS 482

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           ++  +         ++   L + E +          QSF+ +
Sbjct: 483 KKYSLAAGQYFDVKIEYVELTQEEFEAKMSAFKTELQSFFDE 524


>gi|58583086|ref|YP_202102.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58427680|gb|AAW76717.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 514

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 190/567 (33%), Gaps = 77/567 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL             V+ +Y     + 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNNP 48

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    AG  +       L+     N  N+    +     ++  +      +    R
Sbjct: 49  NFEHKL--PAGSRWP-----DLNGKSGLNLLNHYRQMLLDLGKSSDPMIAAIY-ADAQTR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +  +    +      G T  +DL      +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMHGEGAGPIRLGNSLG-TAGRDLPPA---NIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L      GGRA
Sbjct: 265 SNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGL----TPGGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--- 413
           A+VL  + LF    G   +EIRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +  G  Q     DL +++ N G KR        +   + Y +  NG   R       
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPNFG-KRTPFGPTHLKPFEEAYGTDPNGASPRTDAGEQG 424

Query: 474 GYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +R     +       L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASK 554
             G  +  +++     E   L+V + +
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSGE 510


>gi|149189420|ref|ZP_01867705.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1]
 gi|148836778|gb|EDL53730.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1]
          Length = 504

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 100/478 (20%), Positives = 182/478 (38%), Gaps = 72/478 (15%)

Query: 38  FTLLRRLECAL-------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +          +  R  + E+YL    +  D E         F N   +    
Sbjct: 33  LLFLKVFDAQEEELELELDDYREPIPEEYLWRNWAA-DAEGMTGDELLEFVNDDLFPT-- 89

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                    L++Y A    N +       FS     ++   LL ++    + I+   D+ 
Sbjct: 90  ---------LKNYAAPIDKNPRGFVAKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSN 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE +++   S  +  A +F TPR V       L           P +  ++ 
Sbjct: 140 ERHLFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGESIM 187

Query: 211 DPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           DP  GTGGFL  + +HV +      + H+       HG E +   H +C+  M++  +E 
Sbjct: 188 DPATGTGGFLACSFDHVKNNYVKTAADHQTLQK-QIHGVEKKQLPHLLCITNMMLHGIE- 245

Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +   I+ G+TL+K L +     +   +NPPFG     ++D +EK           
Sbjct: 246 -----VPVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNF--------- 288

Query: 326 PGLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   +  + + LFL  +   L+       GGRA +VL    LF       +++I++ L E
Sbjct: 289 PAEMQTRETADLFLQLIIEVLDEGSDTKSGGRAGVVLPDGTLF---GEGVKTKIKKMLTE 345

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKR 441
              +  IV LP  +F   T I T +   +  K        + +   +  +        K 
Sbjct: 346 ECNLHTIVRLPNGVFNPYTGIKTNILFFTKGKP------TKEVWFYEHPYPEGVKNYSKT 399

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + +  ++ +Q +D + S E+G  SR+         ++ +   +  +F LD     + E
Sbjct: 400 KPMKFEEFKQEIDWWGSEEDGFASRV---ENKHAWKVSIEEIIERNFNLDIKNPYQGE 454


>gi|194443867|ref|YP_002043769.1| type I restriction-modification system M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194402530|gb|ACF62752.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 489

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 173/458 (37%), Gaps = 70/458 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----------TRNNLESYI----ASFSD 109
              +    ++   Y       Y      + N             ++L   +    A    
Sbjct: 40  DAQEQALEIEQEKYRLPMPERYLWRNWAADNEGITGDKLLAFVNDDLFPTLKDLPAQIDI 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +       FS     ++   LL ++    + I+    +    +  +IYE ++R   + 
Sbjct: 100 NPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTRAS-ERHLFGDIYEQILRDLQAA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A +F TPR V       +           P +  ++ DP CGTGGFL  A +HV +
Sbjct: 159 GN--AGEFYTPRAVTRFMVERV----------DPKLGESIMDPACGTGGFLACAFDHVKN 206

Query: 230 CGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
             +H      +     HG E +   H +C   ML+  +E      +   I+  +TL+K L
Sbjct: 207 HYAHTVTDHQILQKQIHGVEKKQLPHLLCTTNMLLHGIE------VPVQIRHDNTLNKPL 260

Query: 287 FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +  ++    ++NPPFG     ++D +EK           P   +  + + LFL  +   
Sbjct: 261 SSWDEQMDVIITNPPFGG---TEEDGIEKNF---------PSDMQTRETADLFLQLIIEV 308

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIA 404
           L       GRAA+VL    LF       +++I++ L E   +  IV LP  +F   T I 
Sbjct: 309 L----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIVRLPNGVFNPYTGIK 361

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIINDDQRRQILDIYVSRENG 462
           T L   +  +        + I   +      ++N  K + +  ++ + +I D + +  +G
Sbjct: 362 TNLLFFTKGQP------TKEIWFYEHPHPAGVKNYSKTKPMKFEEFQAEI-DWWGNEADG 414

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
             SR+         ++ +   +  +F LD     + E 
Sbjct: 415 FASRV---ENEQAWKVSIDEVIARNFNLDIKNPHQAET 449


>gi|159026886|emb|CAO89137.1| hsdM [Microcystis aeruginosa PCC 7806]
          Length = 495

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 93/494 (18%), Positives = 160/494 (32%), Gaps = 72/494 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           + AS+ + +W     L  D     +G  +        L+  +   +P  +          
Sbjct: 2   NTASIVSKVWSFCNTLRDDGVS--YGDYLEQLTYLLFLKMADEYAKPPYN---------- 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                                 Y   +L S    +    Y+    +    K +     F+
Sbjct: 50  --------------RKIGIPFAYDWQSLRSKRGADLEAHYLGILRELGQKKGLLGQI-FT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++    L KI             +   V  +IYE L+ +   +   GA  + TPR
Sbjct: 95  KAQNKIQDPAKLLKIITMIDEENW--VMMETDVKGDIYEGLLEKNAEDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240
            ++      L           P  + T+ DP CGTGGF   A N +       +      
Sbjct: 153 PLIWSMVECL----------RPQPMATIADPACGTGGFFLAAYNFLVKNYPLDREQKEFL 202

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG E+   T  + +  M +  +               ST +    +     Y L+
Sbjct: 203 KKSTFHGNEIVANTRRLALMNMFLHNIGDINDEQCFI----ASTDALIAPSPFSVDYVLA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFGKK        + E    +L           S+  + F+ H+ + L+      G+A
Sbjct: 259 NPPFGKKSSLTFTNEDGEQDREDLTYNRQDFWATTSNKQLNFVQHIRSMLKSR----GQA 314

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+  + LF G AG     +R+ LL    +  I+ LPT +F++  +   +    N K  
Sbjct: 315 AVVVPDNVLFEGGAGE---TVRKQLLSTTDLHTILRLPTGVFYKQGVKANVIFFDN-KPA 370

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL-----------DIYVSRENGKFS 465
            +    + I   D  T+I    KK  +   D +  I            + Y  +      
Sbjct: 371 AKDPWTKAIWFYDFRTNIHFTLKKNPLKPADLQDFITCYHPQNRHQRSETYSEQNPEGRW 430

Query: 466 RMLDYRTFGYRRIK 479
           R   Y     R   
Sbjct: 431 RKFTYDEIIARDKT 444


>gi|298384307|ref|ZP_06993867.1| type I restriction-modification system, M subunit [Bacteroides sp.
           1_1_14]
 gi|298262586|gb|EFI05450.1| type I restriction-modification system, M subunit [Bacteroides sp.
           1_1_14]
          Length = 472

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 174/509 (34%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNTTEQSLTKKVWSLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    DL +     G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWNDLIAL---DGLDLVKQYEETLKLL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLAAYDYMKVQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T +++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDVKHTLATNK-LERHHLDDFISCYNNRVET-----YDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+    + DKT L     DITW K
Sbjct: 409 WR-KYPIEDILVRDKTSL-----DITWIK 431


>gi|237726589|ref|ZP_04557070.1| type I restriction enzyme StySJI M protein [Bacteroides sp. D4]
 gi|265752107|ref|ZP_06087900.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           3_1_33FAA]
 gi|229435115|gb|EEO45192.1| type I restriction enzyme StySJI M protein [Bacteroides dorei
           5_1_36/D4]
 gi|263236899|gb|EEZ22369.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           3_1_33FAA]
          Length = 472

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 173/509 (33%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNTTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    D    + + G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWAD---LIVLDGLDLVKQYEETLKLL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVET-----YDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+      DKT L     DITW K
Sbjct: 409 WR-KYPVDEIIARDKTSL-----DITWIK 431


>gi|188577915|ref|YP_001914844.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522367|gb|ACD60312.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 514

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 99/567 (17%), Positives = 191/567 (33%), Gaps = 77/567 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL             V+ +Y     + 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNNP 48

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    AG  +       L+     N  N+    +     ++  +      +    R
Sbjct: 49  NFEHKL--PAGSRWP-----DLNGKSGLNLLNHYRQMLLDLGKSSDPMIAAIY-ADAQTR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +  +    +      G T  +DL      +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMHGEGAGPIRLGNSLG-TAGRDLPPA---NIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGR+
Sbjct: 265 SNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRS 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--- 413
           A+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +  G  Q     DL +++ N G KR        +     Y S  NG   R       
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPNFG-KRTPFGPTHLKPFEQAYGSDPNGASPRTDAGEQG 424

Query: 474 GYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +R     +       L +S++ D   +   ++  +   L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPSPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASK 554
             G  +  +++     E   L+V + +
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSGE 510


>gi|212691149|ref|ZP_03299277.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855]
 gi|237712399|ref|ZP_04542880.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           9_1_42FAA]
 gi|212666381|gb|EEB26953.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855]
 gi|229453720|gb|EEO59441.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           9_1_42FAA]
          Length = 472

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 173/509 (33%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNTTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    D    + + G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWAD---LIVLDGLDLVKQYEETLKLL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVET-----YDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+      DKT L     DITW K
Sbjct: 409 WR-KYPVDEILARDKTSL-----DITWIK 431


>gi|268592727|ref|ZP_06126948.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131]
 gi|291311501|gb|EFE51954.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131]
          Length = 490

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 161/414 (38%), Gaps = 53/414 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+    T   
Sbjct: 83  NDDLFPALKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFSNST-ER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       +           P +  ++ DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPRLGESIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  A +HV +     +           G E +   H +C   ML+  +E    
Sbjct: 190 ACGTGGFLACAFDHVKEHYVKTTEDHKTLQQQIFGVEKKQLPHLLCTTNMLLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+  +TL+K L    ++F   ++NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIRHDNTLNKPLSAWDEQFDVIITNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L    +  GRAA+VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLIIEVL----SDKGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F   T I T +   +  +        + I   +  +        K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEIWFYEHPYPEGVKNYSKTKPMKF 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           ++ +  +D + +  +G  SR          ++ +   +  +F LD     + E 
Sbjct: 399 EEFQTEIDWWGNEADGFASR---EENNQAWKVSIDEIIARNFNLDIKNPYQGET 449


>gi|312869822|ref|ZP_07729964.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3]
 gi|311094668|gb|EFQ52970.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3]
          Length = 484

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 189/550 (34%), Gaps = 85/550 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           S   +   +WK ++ L  D     +   +        L+  +   E   + + EKY    
Sbjct: 4   SNQEIVQQLWKESDVLRDDGVT--YQDYVTELTYILFLKMSKEQNEE--AEIPEKYRWDS 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +    +            Y    L   N +      I +  DNA    +       
Sbjct: 60  LLQYEGLELMNF----------YRQLLLDLGNPQKTNSPRINAIYDNASTSID------- 102

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                +   L KI  +  G++    +     +  +YE L+ +  +E   GA  + TPR +
Sbjct: 103 -----EPANLEKIIHDIDGLDWF--SARQEGLGALYEGLLEKNANETKSGAGQYFTPRPL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235
           +++   +            P +   L DP  GT GF+  A +++++             K
Sbjct: 156 INMMVRMT----------KPQVGERLNDPAAGTFGFMVAANDYLSEQTDEFFDLSQEDRK 205

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P TH + +    +  ++          + QG +LS      K F   
Sbjct: 206 FEKEEAFSGMELVPNTHRLALMNQYLHGMDG--------RLDQGDSLSAAGKWMKNFDVV 257

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE         + S+  + FL  + N L+   +G GR
Sbjct: 258 LTNPPFGTK------------KGGERATRDDLTYETSNKQLNFLQIIYNSLK--TDGHGR 303

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF    G     IR+ LL    +  I+ LPT +F+   + T +   +   +
Sbjct: 304 AAVVVPDNVLFADGTGEA---IRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGAS 360

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +      + I   D+   +R  G KR  +N+    +   ++ + +  K     D      
Sbjct: 361 D--TDNTKEIWIYDMRHQMRTFG-KRNPLNEKDFAEFEKLFSADDLTKRKENWDKDKNPN 417

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            R       R   I +         DI+W      H +    + + + +           
Sbjct: 418 GRW------RKFTIDEIMKRPNTSLDISWMNEEEEHDN--RSLKEILSEMNDKSTAISEA 469

Query: 536 VKESIKSNEA 545
           + E  K+ E 
Sbjct: 470 IAELNKALEG 479


>gi|253569705|ref|ZP_04847114.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840086|gb|EES68168.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 472

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 106/509 (20%), Positives = 175/509 (34%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   + +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNSSTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    DL +F    G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWADLIAF---DGLDLVKQYEETLKLL--------------SELDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVET-----YDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+      DKT L     DITW K
Sbjct: 409 WR-KYPVDEIIARDKTSL-----DITWIK 431


>gi|73670715|ref|YP_306730.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72397877|gb|AAZ72150.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 498

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 179/550 (32%), Gaps = 76/550 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+E T   +S+ + +W     L  G   + D+ + +     L+  E   +P  +      
Sbjct: 1   MSENT---SSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKMAEEFSKPPYN------ 51

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFED 117
                              +     EY+   L           Y     +      +   
Sbjct: 52  ------------------RNIGIPEEYTWDKLKQQRGAELDTRYRELLEELGQKPGMLGQ 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F     ++    +LYKI             V       IYE L+++   +   GA  +
Sbjct: 94  I-FLKAQNKVSDPAMLYKIIDMIDKESWVMMGV--DTKGEIYEGLLQKNAEDTKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN----HVADCGSH 233
            TPR ++ +    L           PG ++T+ DP CGTGGF   A +    H       
Sbjct: 151 FTPRPLIKVMVQCL----------QPGPLKTIGDPCCGTGGFFLAAYDFLTSHYRLDKEQ 200

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G E+   T  + +  M +  +      D    I     L  D   G R+ 
Sbjct: 201 SRFLKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFGKK        E E +  EL           S+  + FL H+   L+     
Sbjct: 256 YILTNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWTTTSNKQLNFLQHIHTILKT---- 311

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG+AA+VL  + LF G AG     IR+ LLE   +  I+ LPT +F+   +   +     
Sbjct: 312 GGQAAVVLPDNVLFEGGAGE---TIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFE- 367

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-------------SR 459
            KT  +    + +   D  T++ +  KK   +        +  Y                
Sbjct: 368 AKTASKEPWTKEVWIYDYRTNVHHTLKK-NPMKFSDLEDFIKCYNPENRHIRKETWSEEF 426

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             G+F R   Y     R    L    +            + DI   ++    ++      
Sbjct: 427 PEGRF-RKFSYEEIIARDKTNLDIFWLKDKSLADLDNLPDPDILANEIIENMEASLASFK 485

Query: 520 KPMMQQIYPY 529
           + M       
Sbjct: 486 EIMATINGDN 495


>gi|213612905|ref|ZP_03370731.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647548|ref|ZP_03377601.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 465

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 165/480 (34%), Gaps = 82/480 (17%)

Query: 7   SAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   L   +WK  ++L  G   + ++   +     L+          +     YL  G  
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKM------CKETGQEADYLPEGYR 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             DL+S +      FY      L  LG                   K       F +   
Sbjct: 56  WDDLKSRIDQEQLQFY---RKMLVHLGED-----------------KKKLVQAVFHNVCT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + +   + ++  N   ++ +  T         ++YE L+++  +E   GA  + TPR +
Sbjct: 96  TITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           +     LL           P     + DP  GT GFL +A  +V           G    
Sbjct: 156 IKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  +E +     +  I+ G+TL  D     +    
Sbjct: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQADIV 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +NPPFG     +                   +   S+  + F+ H+   L      GGR
Sbjct: 264 ATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----GGR 305

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+V+  + LF+        EIRR L++   +  I+ LPT +F+   + T +   +    
Sbjct: 306 AAVVVPDNVLFDRVG----LEIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 361

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKFS 465
               + +     +   DL T++   G KR    +   +    +Y         R  G++S
Sbjct: 362 ANPTQDKDCTDDVWVYDLRTNMPRFG-KRTPFTEQYLQPFETVYGEDPHGLSPRAEGEWS 420


>gi|120601905|ref|YP_966305.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120562134|gb|ABM27878.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 495

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/535 (17%), Positives = 181/535 (33%), Gaps = 71/535 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           ++  +   +W     L        +G  +        L+  +    P  +          
Sbjct: 2   TSQEIVARVWSFCHVLRDAGVS--YGDYLEQLTYLIFLKMADEYANPPYN---------- 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                               SE +  +L           YI +  +    K +     F+
Sbjct: 50  --------------RDIGIPSELNWPSLKKQRGAELEAQYIRTLRELGKQKGMLGQI-FT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++   +L ++             +   V  +IYE L+ +   +   GA  + TPR
Sbjct: 95  KAQNKIQDPAMLSRVIDMIDKESW--AQMGASVKGDIYEGLLEKNAEDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            ++      +           P   +T+ DP CGTGGFL  A + + D          + 
Sbjct: 153 PLIKAIVDCM----------HPEPGKTISDPACGTGGFLLAAYDFILDRYKGQLDKAQVA 202

Query: 242 ------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G E+ P T  +C+  +L+  + S    D    I     L           Y 
Sbjct: 203 YLKEGAFTGNEIVPNTRRLCLMNLLLHGIGS---IDGEPPIHPDDALLS--TPSSTVDYV 257

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGG 354
           L+NPPFGKK        + + +  +             +  + F+ H+ + L+      G
Sbjct: 258 LTNPPFGKKSTMTVTNDDGKQEKEDFVYNRQDFWVTTGNKQLNFVQHIRSMLK----STG 313

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+V+  + LF G  G     +R+ L++   +  I+ LPT +F+   +   +    N K
Sbjct: 314 KAAMVVPDNVLFEGGGGE---TVRKELMKTTNLHTILRLPTGIFYAHGVKANVIFFDN-K 369

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
              ++   + I   D  T+I +   KR+ +  D     ++ Y S    + +      +  
Sbjct: 370 EASKKPWTKDIWFYDYRTNIHHTL-KRKPLTYDDLLPFVECYQSTNRDELAHTWSESSNP 428

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             R +     ++    DKT +     DI W K S L     L     + ++I   
Sbjct: 429 EGRFRKYTYDQI-IARDKTSM-----DIFWLKDSSLADLDNLPEPDVLAEEIIEN 477


>gi|257465993|ref|ZP_05630304.1| Type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917149|ref|ZP_07913389.1| type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691024|gb|EFS27859.1| type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 475

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/470 (19%), Positives = 164/470 (34%), Gaps = 79/470 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   + ++   +     L+            + E Y      
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAYRWK--- 58

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                                +L        +N+ +  +         +     + +   
Sbjct: 59  ---------------------TLVAYEGIALKNHYQQALLDLGKELGQL--GIIYRNAQT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR ++ 
Sbjct: 96  RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------- 235
               ++           P +  T+YDP  GT GF+ +A  ++ +    +           
Sbjct: 154 AIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRNISQDYYGTAENPISEE 203

Query: 236 --IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                  V    EL  +TH +     L+  +          N  QG TLS+       F 
Sbjct: 204 LSQKYKKVFSACELVQDTHRLGSMNALLHGIGG--------NFLQGDTLSEFGKQFSHFD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K            K GE       +   S+  + FL  +   L +   G 
Sbjct: 256 IILSNPPFGTK------------KGGERATRDDLVYATSNKQLNFLEVIYRSLNV--TGK 301

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+V+  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +  
Sbjct: 302 ARAAVVVPDNVLFEGGVG---KEIRQDLLNKCDVHTILRLPTGIFYSQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            ++      + I   DL T++ + G K   ++ +   +    +  RE  +
Sbjct: 359 TSD--TNNTKEIWYYDLRTNMPSFG-KTNPLSKEHFEEFERSFEKREEKE 405


>gi|145223000|ref|YP_001133678.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145215486|gb|ABP44890.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 494

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/527 (19%), Positives = 180/527 (34%), Gaps = 72/527 (13%)

Query: 11  LANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L + +W     L  D     ++ + +     L+                           
Sbjct: 7   LVDKLWSYCNVLRDDGVGVIEYTEQLTYLLFLKMAH------------------------ 42

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIARL 127
           E   +          EYS   L      +    Y       A+           +     
Sbjct: 43  ERATRKLNPQKIVPDEYSWQKLLDAEGTDLEVEYTKILVGLAQQPGTLGTIYRKAQNRVQ 102

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + A L   I                 +  + YE L+ +  S+   GA  + TPRD++   
Sbjct: 103 DPAKLKRLIIDLIDKENWSAS--GTDLKGDAYEELLAKGASDKGSGAGQYFTPRDLIRAI 160

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPILVP 242
             ++          +P +  T+ DP CGTGGFL  A  HVA+                  
Sbjct: 161 VDVI----------NPSVSDTIVDPACGTGGFLLVAHEHVAEGAGKLTPTQRSHLRDKFV 210

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G EL   T  +    +L+  + +    D    I+    L  D   G+R+   LSNPPFG
Sbjct: 211 TGYELVDGTARLAAMNLLLHGIGT---ADGESLIEVRDALISD--PGQRWSVVLSNPPFG 265

Query: 303 KKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           +K        + +E ++         +   S+  + FL H+   L++     GRAA+VL 
Sbjct: 266 RKSSLTMVGADGREARDDVEIERQDFVVTTSNKQLNFLQHIMTILDI----NGRAAVVLP 321

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            + LF G AG     +RR LL++  +  ++ LPT +F+   +   +     RK    +  
Sbjct: 322 DNVLFEGGAGE---TLRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFD-RKPAAEQPW 377

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            + +   DL T+      K+  +      +  D Y+S +  +  R+   R   Y      
Sbjct: 378 TKKLWVYDLRTNQH-FTLKQNPLRRHHLDEFADSYLSGK-PREERVESERWKAY------ 429

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                    D     ++  DITW +   L  +  L   + + ++I  
Sbjct: 430 ------DYDDLVARDKVNLDITWLRDESLEDADNLPAPEVIAREIVE 470


>gi|257452212|ref|ZP_05617511.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
 gi|317058755|ref|ZP_07923240.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
 gi|313684431|gb|EFS21266.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
          Length = 475

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/470 (19%), Positives = 164/470 (34%), Gaps = 79/470 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   + ++   +     L+            + E Y      
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAYRWK--- 58

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                                +L        +N+ +  +         +     + +   
Sbjct: 59  ---------------------TLVAYEGIALKNHYQQALLDLGKELGQL--GIIYRNAQT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR ++ 
Sbjct: 96  RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------- 235
               ++           P +  T+YDP  GT GF+ +A  ++ +    +           
Sbjct: 154 AIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRNISQDYYGTAENPISEE 203

Query: 236 --IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                  V    EL  +TH +     L+  +          N  QG TLS+       F 
Sbjct: 204 LSQKYKKVFSACELVQDTHRLGSMNALLHGIGG--------NFLQGDTLSEFGKQFSHFD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K            K GE       +   S+  + FL  +   L +   G 
Sbjct: 256 IILSNPPFGTK------------KGGERATRDDLVYATSNKQLNFLEVIYRSLNV--TGK 301

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+V+  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +  
Sbjct: 302 ARAAVVVPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            ++      + I   DL T++ + G K   ++ +   +    +  RE  +
Sbjct: 359 ISD--TNNTKEIWYYDLRTNMPSFG-KTNPLSKEHFEEFERSFEKREEKE 405


>gi|200387513|ref|ZP_03214125.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238910689|ref|ZP_04654526.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|199604611|gb|EDZ03156.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 489

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    ++   +E     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNNYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIIEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +  +       I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQPTKD------IWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDEVIARNFNLDIKNPHQAET 449


>gi|166711006|ref|ZP_02242213.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 514

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/567 (17%), Positives = 189/567 (33%), Gaps = 77/567 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL             V+ +Y     + 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNNP 48

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    AG  +       L+     N  N+    +     ++  +      +    R
Sbjct: 49  NFEHKL--PAGSRWP-----DLNGKSGLNLLNHYRQMLLDLGKSSDPMIAAIY-ADAQTR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDELYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +  +    +      G T  +DL      +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMHGEGAGPIRLGNSLG-TAGRDLPPA---NIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L      GGRA
Sbjct: 265 SNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGL----TPGGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--- 413
           A+VL  + LF    G   +EIRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAA 365

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +  G  Q     DL +++ + G KR        +     Y +  NG   R       
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFG-KRTPFGPTHLKPFEQAYGTDPNGASPRTDAGEQG 424

Query: 474 GYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +R     +       L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASK 554
             G  +  +++     E   L+V + +
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSGE 510


>gi|56416309|ref|YP_153384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365232|ref|YP_002144869.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130566|gb|AAV80072.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096709|emb|CAR62332.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 528

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 176/530 (33%), Gaps = 93/530 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +     YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEADYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG                   K       F + 
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RKMLVHLGED-----------------KKKLVQAVFHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   + ++  N   ++ +  T         ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     +  
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAD 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRT--------------FVHPTSNKQLCFMQHIIETLRP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF+        EIRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFDRVG----LEIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 359

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
                 + +     +   DL T++   G KR    +   +    +Y         R  G+
Sbjct: 360 TVANPTQDKDCTDDVWVYDLRTNMPRFG-KRTPFTEQYLQPFETVYGEDPHGLSPRAEGE 418

Query: 464 FS------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRK 506
           +S       + D                  F  +    A+ ++ DI+W K
Sbjct: 419 WSFNAEETEVADSEENKNTDQHQATSRWRKFSREWIRTAKSDSLDISWLK 468


>gi|1841495|emb|CAA71895.1| StySKI methylase [Salmonella enterica]
          Length = 493

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 178/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    ++   +E     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 195 CGTGGFLACAFDHVKNNYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 249

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 250 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 295 EMQTRETADLFLQLIIEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 347

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 348 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     ++E 
Sbjct: 402 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDEVIARNFNLDIKNPHQVET 453


>gi|150006642|ref|YP_001301386.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|294775332|ref|ZP_06740854.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|149935066|gb|ABR41764.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|294450789|gb|EFG19267.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 472

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 173/509 (33%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNTTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    D    + + G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWAD---LIVLDGLDLVKQYEETLKLL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAIVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVET-----YDAENNPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+      DKT L     DITW K
Sbjct: 409 WR-KYPVDEILTRDKTSL-----DITWIK 431


>gi|320665589|gb|EFX32635.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 489

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPLPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|84624925|ref|YP_452297.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368865|dbj|BAE70023.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 514

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 189/567 (33%), Gaps = 77/567 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL             V+ +Y     + 
Sbjct: 2   TQNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNNP 48

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    AG  +       L+     N  N+    +     ++  +      +    R
Sbjct: 49  NFEHKL--PAGSRWP-----DLNGKSGLNLLNHYRQMLLDLGKSSDPMIAAIY-ADAQTR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +  +    +      G T  +DL      +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMHGEGAGPIRLGNSLG-TAGRDLPPA---NIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L      GGRA
Sbjct: 265 SNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGL----TPGGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--- 413
           A+VL  + LF    G   +EIRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +  G  Q     DL +++ + G KR        +     Y S  NG   R       
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFG-KRTPFGPTHLKPFEQAYGSDPNGASPRTDAGEQG 424

Query: 474 GYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +R     +       L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASK 554
             G  +  +++     E   L+V + +
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSGE 510


>gi|320644442|gb|EFX13507.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H- str. 493-89]
          Length = 489

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLKFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|254470280|ref|ZP_05083684.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062]
 gi|211960591|gb|EEA95787.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062]
          Length = 519

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/553 (19%), Positives = 191/553 (34%), Gaps = 85/553 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  S+   +W+    L        + + +   T L  L+   E      +EK      S 
Sbjct: 2   NTNSIVQKLWRLCSVLRK--DGITYQQYVTELTYLLFLKMMQE------KEKEEGAIPSG 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST---------------NTRNNLESYIASFSDNA 111
           +     VK  G          L+TLG+T                T  + E          
Sbjct: 54  MRWNDLVKTDGLPQLELYRDLLTTLGTTSSRLGKDDELLRKPHETAVDAEKATYKDGKRI 113

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             + +D  F ++   L     L K+      ++ +   +      ++YE L+++   E  
Sbjct: 114 PKMVQDI-FENSATFLRDPVNLNKLVTEIDKLDWY--DIERDQFGDLYEGLLQKNAEETK 170

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +GA  + TPR ++ +   L+           P     + DP  GTGGFL  A  ++    
Sbjct: 171 KGAGQYFTPRVLIDVIVDLM----------QPQPGERIQDPATGTGGFLIAADRYMKART 220

Query: 232 SHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             +        K       HG E   +T+ + +  + +   ++        +I  G TLS
Sbjct: 221 DGYYDLGEEGAKFQKEQAFHGMENVRDTYRLLLMNLYLHDFDTS-------HILAGDTLS 273

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 ++    L+NPPFG    K       E  N            +S   + F+ H  
Sbjct: 274 PKGEGMEKVDVILTNPPFGPAGGKPTRDDLSETAN------------VSSYQLPFVEHCI 321

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+     GGRAAIV+  + LF    G     +R+ ++    +  I+ LPT +F+   +
Sbjct: 322 RGLKP----GGRAAIVIPDNVLFEDGRG---KALRQKMMRECDVHTILRLPTGIFYAQGV 374

Query: 404 ATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T +  L    T E    +  + + +   DL + +   GK    + ++   + +  Y + 
Sbjct: 375 KTNVIFLKKSTTVELASLKTDETKKLWVYDLRSQMPQFGKTSP-LTEEHFAEFVKAYGAD 433

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            NG   R  +     +R           F  D+        DITW +     Q   L   
Sbjct: 434 ANGGAKRTDEGEEGRFRY----------FSRDEITARGDNLDITWLRDDEEEQEEGLSEP 483

Query: 520 KPMMQQIYPYGWA 532
           + +   I  +  A
Sbjct: 484 EDIAAAILGHLTA 496


>gi|169634836|ref|YP_001708572.1| DNA methylase M, host modification [Acinetobacter baumannii SDF]
 gi|169153628|emb|CAP02820.1| DNA methylase M, host modification [Acinetobacter baumannii]
          Length = 509

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 103/509 (20%), Positives = 181/509 (35%), Gaps = 76/509 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
              ++   IW     L G      + + +  L     L+         +    E  +  G
Sbjct: 2   KQDTVIQKIWSLCNILRG--DGITYYQYVSELSYLLFLK-------IAQENGSEILIPEG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DLE+  +     FY   +  L+ LG+ N  N +   I +F     +  E+      
Sbjct: 53  YRWADLEAHEEEGLLGFY---QEMLTHLGA-NVENEVIRDIYAFPTTVFSHSENLK---- 104

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                       +    S IE H   V      ++Y  LI +   +   GA  + TPR +
Sbjct: 105 -----------AVIDGISEIEWH--QVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSL 151

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           ++    L+           P +   + DP  G+GGFL  A +++    S  +       +
Sbjct: 152 INSIIRLI----------QPNLGDLIQDPATGSGGFLVSADSYIRTKSSQEEYQASPPKY 201

Query: 244 -GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E+E  T  +C+    +  L++        NI  G  L+ D+         L+NPPFG
Sbjct: 202 QGVEIEKNTRRICLMNTFLHHLDA--------NIVYGDALTDDVLKLDDPDIILANPPFG 253

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K               +           ++  + FL H+   L+     GGRAA+VL  
Sbjct: 254 NK------------AGSQRPLRSDLPFPNTNKQLAFLQHIYLSLKA----GGRAAVVLPD 297

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER---R 419
           + LF    G   +++R+ L+    +  I+ LPT +F+   + T +   +   T+++    
Sbjct: 298 NVLFESGIG---TDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSTKDKHQQE 354

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
              + +   DL T++ + GK+    N D      D       G F R+      G  +  
Sbjct: 355 NCTENVWIYDLRTNMPSFGKRTPFGNADIGFLPEDFGTDSHLGAFERVFGDNPNGTSKRT 414

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLS 508
                     L+      LE +    KL+
Sbjct: 415 --EGEYSFNALEAEVDKELENENIDEKLA 441


>gi|254881455|ref|ZP_05254165.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           4_3_47FAA]
 gi|319642841|ref|ZP_07997479.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A]
 gi|254834248|gb|EET14557.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           4_3_47FAA]
 gi|317385585|gb|EFV66526.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A]
          Length = 472

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 173/509 (33%), Gaps = 81/509 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNTTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    D    + + G       E +L  L              S  DN         +
Sbjct: 59  PTGYQWAD---LIVLDGLDLVKQYEETLKLL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++    +  +    L
Sbjct: 156 RPLIQAVVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                + I   D  T I++     + +        +  Y +R         D       R
Sbjct: 359 ----TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVET-----YDAENTPQGR 408

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
            +   P+      DKT L     DITW K
Sbjct: 409 WR-KYPVDEILTRDKTSL-----DITWIK 431


>gi|268323783|emb|CBH37371.1| putative type I restriction enzyme, N-6 DNA methylase family
           [uncultured archaeon]
          Length = 452

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 164/460 (35%), Gaps = 58/460 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT       ++ + +W  A+ L  D     +G  +   T L  L+ A E T+     K  
Sbjct: 1   MTNT----ETIISKVWSFADVLRDDGVG--YGDYLEQLTYLLFLKLADEYTKPPYNRKLP 54

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G N +     + A    +           S                          F
Sbjct: 55  IPDGYNWESMLSKRGAELDSHYVKLLRELGKASGILGQI--------------------F 94

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +  +++    LY++    +        +   +   IYE L+ +   +V  GA  + TP
Sbjct: 95  TKSQNKIQDPAKLYRVIDMINNENWSL--MGTDLKGKIYEGLLEKNAEDVKSGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HH 234
           R ++      +           P   +T+ DP CGTGGF   + + + +  +        
Sbjct: 153 RALIMAMVECI----------HPAPGKTICDPACGTGGFFLASYDFLCNPANYRLDKEQK 202

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G E+      +C+  M +  +      D    I    +L  D  +G R+ Y
Sbjct: 203 EFLKDRTFSGNEIVASARRMCLMNMFLHNI---GEIDAESPISSADSLVSD--SGARYDY 257

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGG 353
            L+NPPFGKK        E + +   L           S+  + FL H+   L+      
Sbjct: 258 VLTNPPFGKKSSMTFTTEEGKQEKENLVYNRQDFWATTSNKQLNFLQHIHTLLK----SD 313

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G AA+VL  + LF G AG     +R+ +LE   +  I+ L T +F++  +   +    N 
Sbjct: 314 GHAAVVLPDNVLFEGGAGE---TVRKNMLETTNLHTILRLSTGIFYKQGVKANILFFDN- 369

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           K   +    + +   D  T++    KK  +  +D +  I 
Sbjct: 370 KPASKEPWTKEVWIYDFRTNVHFTLKKNPLKFEDMKDFIA 409


>gi|289667521|ref|ZP_06488596.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 514

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 97/567 (17%), Positives = 191/567 (33%), Gaps = 77/567 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL             V+ +Y     S 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNSP 48

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                  + + +         L +    N  N+ +  +     ++  +      +    R
Sbjct: 49  NFEHKLPEGSRWP-------DLKSKSGRNLLNHYQQMLLDLGQSSDPMIAAIY-ADAQTR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++    +     + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWF--SARQDGLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIRCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPGVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +  +    +    + G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMNGEGAGPI----RLGNSLGAAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGRA
Sbjct: 265 SNPPFGTA------------KGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAT 365

Query: 417 ERRGK---VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             R      Q     DL +++ + G KR            D Y +  NG   R       
Sbjct: 366 NPRQDTSCTQATWVYDLRSNMPSFG-KRTPFGPTHLTPFEDAYGTDPNGASPRTDQGEEG 424

Query: 474 GYRRIKVLR------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +R     +       L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASK 554
             G  +  +++     E   L+V +S+
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSSE 510


>gi|168749491|ref|ZP_02774513.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|195937622|ref|ZP_03083004.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|261226706|ref|ZP_05940987.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256909|ref|ZP_05949442.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. FRIK966]
 gi|188016186|gb|EDU54308.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|320190534|gb|EFW65184.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. EC1212]
 gi|320638730|gb|EFX08388.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320649760|gb|EFX18284.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320654810|gb|EFX22779.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660662|gb|EFX28123.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|326346809|gb|EGD70543.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. 1044]
          Length = 489

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|333010422|gb|EGK29855.1| hypothetical protein SFVA6_0215 [Shigella flexneri VA-6]
          Length = 486

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|146396|gb|AAA23984.1| restriction-modification enzyme type I M subunit [Escherichia coli]
          Length = 489

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|322615695|gb|EFY12615.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618756|gb|EFY15645.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322621830|gb|EFY18680.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627555|gb|EFY24346.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630862|gb|EFY27626.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637920|gb|EFY34621.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322643846|gb|EFY40394.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651075|gb|EFY47460.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656669|gb|EFY52957.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659906|gb|EFY56149.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322661885|gb|EFY58101.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666369|gb|EFY62547.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672788|gb|EFY68899.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676217|gb|EFY72288.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680702|gb|EFY76740.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684404|gb|EFY80408.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323194258|gb|EFZ79455.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197405|gb|EFZ82545.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201478|gb|EFZ86542.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205992|gb|EFZ90954.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213004|gb|EFZ97806.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215377|gb|EGA00121.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223293|gb|EGA07630.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226180|gb|EGA10397.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228833|gb|EGA12962.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236556|gb|EGA20632.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239944|gb|EGA23991.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242009|gb|EGA26038.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247843|gb|EGA31780.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251517|gb|EGA35388.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258116|gb|EGA41793.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263741|gb|EGA47262.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265665|gb|EGA49161.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270110|gb|EGA53558.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 489

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 174/473 (36%), Gaps = 66/473 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    ++   +E     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +HV +                HG E +   H +    ML+  +E     
Sbjct: 191 CGTGGFLACAFDHVKNNYVQSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIE----- 245

Query: 271 DLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   
Sbjct: 246 -VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEM 292

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +  
Sbjct: 293 QTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHT 345

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDD 447
           IV LP  +F   T I T L   +  +  +       I   +  + +      K + +  +
Sbjct: 346 IVRLPNGVFNPYTGIKTNLLFFTKGQPTKD------IWFYEHPYPAGVKNYSKTKPMKFE 399

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           + +  +D + +  +   SR+         ++ +   +  +F LD     + E 
Sbjct: 400 EFQAEIDWWGNEADSFASRV---ENEQAWKVSIDEVIARNFNLDIKNPHQAET 449


>gi|313646314|gb|EFS10776.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332749087|gb|EGJ79510.1| hypothetical protein SFK671_5131 [Shigella flexneri K-671]
 gi|332749700|gb|EGJ80116.1| hypothetical protein SF274771_5150 [Shigella flexneri 2747-71]
 gi|333009052|gb|EGK28508.1| hypothetical protein SFK218_0156 [Shigella flexneri K-218]
 gi|333022253|gb|EGK41491.1| hypothetical protein SFK304_0030 [Shigella flexneri K-304]
          Length = 489

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|331666164|ref|ZP_08367045.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli TA271]
 gi|331066375|gb|EGI38252.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli TA271]
          Length = 489

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|332083324|gb|EGI88555.1| hypothetical protein SB521682_5204 [Shigella boydii 5216-82]
 gi|332083825|gb|EGI89043.1| hypothetical protein SD15574_5337 [Shigella dysenteriae 155-74]
          Length = 489

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|153000502|ref|YP_001366183.1| N-6 DNA methylase [Shewanella baltica OS185]
 gi|151365120|gb|ABS08120.1| N-6 DNA methylase [Shewanella baltica OS185]
          Length = 500

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 172/446 (38%), Gaps = 71/446 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---------------NNLESYIASFSD 109
              + +  +++  YS    SE+      + N                  +L++  A    
Sbjct: 40  DAQEEQLELELDDYSTPIPSEFLWRNWAADNEGITGDELLDFVNDELFPDLKNLTAPIDK 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +       FS     ++   LL ++    + I+   D+    +  ++YE +++   S 
Sbjct: 100 NPRGYVVKAAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGDLYEQILKDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA- 228
            +  A +F TPR +     A+            P +  ++ DP CGTGGFL  A +HV  
Sbjct: 159 GN--AGEFYTPRAITKFIVAVT----------DPKLGESIMDPACGTGGFLACAFDHVKA 206

Query: 229 ---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                   H+       HG E +   H +C   M++  +E      +   I+ G+TL+K 
Sbjct: 207 NYVKTADDHQTLQQ-QIHGVEKKQLPHLLCTTNMMLHGIE------VPVQIKHGNTLNKP 259

Query: 286 LFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           L +  +     ++NPPFG     ++D +EK           P   +  + + LFL  +  
Sbjct: 260 LSSWDEDIDVIITNPPFGG---TEEDGIEKNF---------PSEFQTRETADLFLQLIIE 307

Query: 345 KLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
            L    NG GGRAA+VL    LF       +++I++ LLE   +  IV LP  +F   T 
Sbjct: 308 VLAPATNGKGGRAAVVLPDGTLF---GEGVKTKIKKMLLEECNLHTIVRLPNGVFNPYTG 364

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIINDDQRRQIL------D 454
           I T +   +     +       +   +      ++N  K + +  ++   +++      D
Sbjct: 365 IKTNILFFTKGTPTKH------VWFYEHPYPAGVKNYNKTKPMKFEEFETELVWWGDEAD 418

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKV 480
            + +R   + +  +       R   +
Sbjct: 419 GFAARVENEQAWKVSIDDIIARNYNL 444


>gi|218692732|ref|YP_002400944.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli ED1a]
 gi|218430296|emb|CAV18172.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli ED1a]
          Length = 501

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 45  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 95

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 96  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 155 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 202

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 203 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 258 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 302

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 303 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 355

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 356 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 409

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 410 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 461


>gi|15804921|ref|NP_290963.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 EDL933]
 gi|15834561|ref|NP_313334.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187775912|ref|ZP_02798948.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|189010373|ref|ZP_02806644.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402076|ref|ZP_02779925.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189402859|ref|ZP_02791636.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189403850|ref|ZP_02785602.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189404614|ref|ZP_02809998.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189405571|ref|ZP_02822927.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208808458|ref|ZP_03250795.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811917|ref|ZP_03253246.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821806|ref|ZP_03262126.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398363|ref|YP_002273871.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324963|ref|ZP_03441047.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796346|ref|YP_003081183.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. TW14359]
 gi|291285728|ref|YP_003502546.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|12519367|gb|AAG59530.1|AE005666_2 putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364785|dbj|BAB38730.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770320|gb|EDU34164.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|189000682|gb|EDU69668.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357931|gb|EDU76350.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364319|gb|EDU82738.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368976|gb|EDU87392.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374878|gb|EDU93294.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189379424|gb|EDU97840.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208728259|gb|EDZ77860.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733194|gb|EDZ81881.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741929|gb|EDZ89611.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159763|gb|ACI37196.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217321184|gb|EEC29608.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595746|gb|ACT75107.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. TW14359]
 gi|290765601|gb|ADD59562.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|326345337|gb|EGD69080.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. 1125]
          Length = 493

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 195 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 249

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 250 ---VPVQIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 295 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 347

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 348 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 453


>gi|332749354|gb|EGJ79775.1| hypothetical protein SF434370_4721 [Shigella flexneri 4343-70]
 gi|332768711|gb|EGJ98890.1| hypothetical protein SF293071_0006 [Shigella flexneri 2930-71]
          Length = 476

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 20  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 70

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 71  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 129

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 130 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 177

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 178 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 232

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 233 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 277

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 278 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 330

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 331 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 384

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 385 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 436


>gi|323136162|ref|ZP_08071244.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocystis sp. ATCC 49242]
 gi|322398236|gb|EFY00756.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocystis sp. ATCC 49242]
          Length = 487

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 192/558 (34%), Gaps = 83/558 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           ++ L N +W+    L  D     + + +   T L  L+   E  R    E  +  G    
Sbjct: 4   SSDLVNKLWRLCAVLRKDGVT--YQQYVTELTYLLFLKMMAEQKRE---EGKIPQGARWG 58

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           DL     +A       + Y        + +   +  + +             F++    +
Sbjct: 59  DL-----IAEEGVRRLALYRKILADLGDPQQKRDRAVQAI------------FANAATFI 101

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +   L K+       +LH  T       ++YE L+++   E   GA  + TPR ++ L 
Sbjct: 102 REPVNLDKLIGAID--DLHWFTEERDSFGDLYEGLLQKNAEETKRGAGQYFTPRVLIELL 159

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPI 239
             LL          +P     + DP  GTGGFL  A  ++               +    
Sbjct: 160 VRLL----------APQPGEIIQDPAAGTGGFLIAANRYMRAKTDDFFDLAPKAQEFQLK 209

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G E     + + +  + +  ++S        +I+ G TLS       +    L+NP
Sbjct: 210 HALQGMENVEGVYRLLLMNLFLHGVDS-------WHIELGDTLSPAGAAMNKADVILTNP 262

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG                G+  R    +    S   + F+ H    L+     GGRAA+
Sbjct: 263 PFG-------------PAGGKPSRDDITVTATVSSYQLPFVEHCIRTLKP----GGRAAV 305

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+  + LF    G    E+RR L++   +  I+ LPT +F+   + T +   S  + +  
Sbjct: 306 VVPDNVLFEDGRG---RELRRMLMDYCNLHTILRLPTGIFYAQGVKTNVIFFSKGEADS- 361

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
            G+ + +   DL  ++   G K   +  +        + +  NG+  R  +     +RR 
Sbjct: 362 -GQTKKVWIYDLRANMPAFG-KTSPLTPEHFADFERAFGADPNGRAKRNDEGEEGRFRRF 419

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                      LD          I+W + +       L   + ++  I  +  +     E
Sbjct: 420 TREEIAARGDNLD----------ISWLRDTSADAEDSLSEPEELIAAILGHLKSALGEIE 469

Query: 539 SIKSNEAKTLKVKASKSF 556
           ++      +  V A  + 
Sbjct: 470 TLAEELEDSSAVDAEAAE 487


>gi|288801958|ref|ZP_06407399.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica D18]
 gi|288335393|gb|EFC73827.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica D18]
          Length = 473

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 102/527 (19%), Positives = 179/527 (33%), Gaps = 81/527 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  +L   +WK A  L G      +   +   T L  L   ++     V E+  
Sbjct: 1   MAKNISTEQALTKEVWKLATTLSGQGIG--YTDYVTQLTYLLFL--KMDAENVEVLEEAS 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A            ++ G       E +L+ L     ++NL   I               F
Sbjct: 57  AIPE-EYRWGQLKELDGLDLIAQYEKTLNVLS---KQDNLIGTI---------------F 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMIDEHQWL--EMDGDVKGAIYEGILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      L           P +  T+ DP CGTGGFL  A +++            L
Sbjct: 156 RPLIQAMIDCL----------QPKIGETVCDPACGTGGFLLAAYDYMKGQSQDKGKLDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D      ++  +                 L+
Sbjct: 206 NNKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIACEDSLE-------KEPETLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG++     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGERTAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+    LF   A      +R+ LL +  +  I+ LPT +F+   +   +   +  +  +
Sbjct: 304 VVIPDDILFKDGA---HEIVRKKLLTDFNLHTILRLPTGIFYANGVKANVLFFTKGQPTK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                  I   D  T++     K  ++    +R  LD +V+  N         RT  Y  
Sbjct: 361 D------IWFYDYRTNV-----KHTLVTTKLQRHHLDDFVACYNAA------TRTETYNE 403

Query: 478 IKVLRPLRMSFILDKT-GLARLEADITWRKLSPLHQSFWLDILKPMM 523
                     +  D      +   DITW K     + F LD L   +
Sbjct: 404 ETNPAGRWRKYAADDILARDKTSLDITWIKAGGAEEQFTLDELMTNI 450


>gi|323157624|gb|EFZ43730.1| hypothetical protein ECEPECA14_0478 [Escherichia coli EPECa14]
          Length = 489

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 174/471 (36%), Gaps = 62/471 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +  V E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GFL  A +HV +        H  +      HG E +   H +    ML+  +E      +
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE------V 246

Query: 273 SKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   K 
Sbjct: 247 PVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMKT 294

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +  IV
Sbjct: 295 RETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIV 347

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQR 449
            LP  +F   T I T L   +  +        + I   +  + +      K + +  ++ 
Sbjct: 348 RLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMKFEEF 401

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 QAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|26251230|ref|NP_757270.1| putative restriction modification enzyme M subunit [Escherichia
           coli CFT073]
 gi|26111663|gb|AAN83844.1|AE016772_22 Putative restriction modification enzyme M subunit [Escherichia
           coli CFT073]
          Length = 507

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 51  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 101

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 102 DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 160

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 161 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 208

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 209 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 263

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 264 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 308

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 309 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 361

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 362 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 415

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 416 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 467


>gi|110644784|ref|YP_672514.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536]
 gi|110346376|gb|ABG72613.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536]
          Length = 501

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 45  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 95

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 96  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 155 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPA 202

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 203 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 258 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 302

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 303 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 355

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   D  + +      K + + 
Sbjct: 356 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYDHPYPAGVKNYSKTKPMK 409

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 410 FEEFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 461


>gi|307566324|ref|ZP_07628763.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
 gi|307344901|gb|EFN90299.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
          Length = 301

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 45/330 (13%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +   G       I   +GQE    T+ +    ML+  +    
Sbjct: 1   MLDFACGSGSLLLNVRHEMGTNG-------IGKIYGQEKNITTYNLARMNMLLHGV---- 49

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            +D    I  G TL  D              F   ++NPPF  +WE       KE    +
Sbjct: 50  -KDTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEP------KEETAKD 102

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 GL   S     FL+H  + L    +G G  AI+L    LF    G  E  IR+ 
Sbjct: 103 FRFSRYGLAPKSAADFAFLLHGFHYL----SGDGTMAIILPHGVLFR---GGKEETIRKK 155

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL +D I+A++ LP +LF+ T I   + +L   +   R   +  INA+        +GK+
Sbjct: 156 LLSDDNIDAVIGLPANLFYSTGIPVCILVLKKCR---RTDDILFINASS--EEHYEKGKR 210

Query: 441 RRIINDDQRRQILDIYVSR-ENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           + ++      +I++ Y  R E  +++R +   + +  GY  + + R + +S   +K  LA
Sbjct: 211 QNLLRPKDINKIVETYQFRIEENRYARKVYMREIKDNGY-NLNISRYVNLSKEEEKIDLA 269

Query: 497 RLEADI--TWRKLSPLHQSFWLDILKPMMQ 524
            +   +  T  K+    Q     + +  + 
Sbjct: 270 EVHRQLVATEEKIEAARQKHNEFLKELGLD 299


>gi|269838109|ref|YP_003320337.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
 gi|269787372|gb|ACZ39515.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
          Length = 507

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 114/560 (20%), Positives = 186/560 (33%), Gaps = 82/560 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEP---TRSAVREK 58
           T  A  +   +W     L  D     +G  +        L+      +      S V E 
Sbjct: 4   TNHAQQIVQRLWSYCNVLRDDGLS--YGDYVEQLTYLLFLKMAHEQTQEPWNRPSPVPEG 61

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y        D  S +   G        + L  LG           +      A+   +D 
Sbjct: 62  Y--------DWPSLLARDGDELETHYRHLLEELGRQ------PGMLGLIFHKAQNKIQD- 106

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                      A L   I       +     +        YE L+ +   +V  GA  + 
Sbjct: 107 ----------PAKLRRLIVDLIDREQWM--VLGTDAKGATYEGLLEKNARDVKGGAGQYF 154

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     ++           P    T+ DP CGTGGFL  A N + +   H     
Sbjct: 155 TPRPLIQAIVDVM----------RPQPGETICDPACGTGGFLLAAHNSIVERYPHLDPEQ 204

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRF 292
            K   +    G E+      +C   +L+  +   P   D+   ++ G +L+        F
Sbjct: 205 RKHLKLHALRGVEIVDSVTRLCAMNLLLHGVGPGPAEADIEPPVRTGDSLNS--APSDHF 262

Query: 293 HYCLSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              L+NPPFG+K       ++   E+E        F       S+  + F+ H+ + L++
Sbjct: 263 DVVLTNPPFGRKSSVLVVNEEGQQEREALTVVREDFWA---TTSNKQLNFVQHVKSLLKI 319

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRAA+V+  + LF G AG     IRR LL+   +  ++ LPT +F+   +   + 
Sbjct: 320 ----HGRAAVVVPDNVLFEGGAGE---TIRRKLLQECDVHTLLRLPTGIFYAQGVKANVL 372

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               +   E+    QL    DL T+     K + +   D     LD +V+  N +     
Sbjct: 373 FFDRKPPREQPWTSQL-WIYDLRTNKHFTLKTKPLQRSD-----LDEFVACFNPE----- 421

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             R           P           L    ++  DI W K   L     L     +   
Sbjct: 422 -NRHQRTPTWSEENPDGRWRAFSYDELIQRDKVNLDIFWLKDKSLEDGENLGDPDEIAAD 480

Query: 526 IYPYGWAESFVKESIKSNEA 545
           I     A     E+I ++ A
Sbjct: 481 IVEDLRAALEEFETILADLA 500


>gi|237739318|ref|ZP_04569799.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           2_1_31]
 gi|229422926|gb|EEO37973.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           2_1_31]
          Length = 474

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 103/497 (20%), Positives = 178/497 (35%), Gaps = 88/497 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   + ++      IL    L+ L          + E+Y   
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKMLAEQDNEAEVGIPEEYRWN 58

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                     +K+ G     T + +L  L     + N  + I               + +
Sbjct: 59  T--------LIKLDGLELKTTYQKALIDLAQ---KENNLAII---------------YRN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +E+   L KI      ++ +  +V      ++YE L+ +  SE   GA  + TPR 
Sbjct: 93  AKTNIEEPANLKKIFSEIDKMDWY--SVDKEDFGDLYEGLLEKNASEKKSGAGQYFTPRV 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK------- 235
           ++     +            P +   + DP  GT GF+  A  ++ +    +        
Sbjct: 151 LIDTIVKVT----------KPQLKERICDPASGTLGFIISANRYIKEKNDDYYGISEEDY 200

Query: 236 -IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      EL P+TH + +   L+  +E         N  QG TLS      K F  
Sbjct: 201 AFQKKEAFSACELVPDTHRLGIMNALLHGVEG--------NFLQGDTLSATGTQLKNFDL 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPPFG K            K GE       +   S+  + FL  +   L L   G  
Sbjct: 253 ILSNPPFGTK------------KGGERATRDDLVFSSSNKQLNFLEIIYRSLNL--TGRA 298

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA +VL  + LF G  G    +IR+ LL    +  I+ LPT +F+   + T +      K
Sbjct: 299 RAGVVLPDNVLFEGGIG---KDIRQDLLNKCNVHTILRLPTGIFYAQGVKTNVLFFDRAK 355

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           T+   G  + I   DL T++ N G K   + +    + +  + + E  +       +   
Sbjct: 356 TD--IGNTKDIWFYDLRTNMPNFG-KTTPLTEKYFEEFISTFDNDEEKE-------KLER 405

Query: 475 YRRIKVLRPLRMSFILD 491
           + +I +   ++  + LD
Sbjct: 406 WTKISIDEVIKKDYSLD 422


>gi|283796716|ref|ZP_06345869.1| type I restriction enzyme M protein [Clostridium sp. M62/1]
 gi|291075600|gb|EFE12964.1| type I restriction enzyme M protein [Clostridium sp. M62/1]
          Length = 542

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/526 (15%), Positives = 182/526 (34%), Gaps = 64/526 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECAL---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
              ++  VI    L + L          + +       +  +  +L    ++      + 
Sbjct: 26  DGNEYK-VITQIFLYKFLNDKFGYEIKKKDSRIASAEKWETAYSELPEDDRLDLLDSLSP 84

Query: 84  --SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKN 139
                    L ST      +       D+      D   D  ST         L++   N
Sbjct: 85  DIPRLYPEHLISTLWNQQAKGDFDLIFDSTMVDIADKNIDIFSTQTTKNTKIPLFEKLTN 144

Query: 140 FSG----------------IELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           F                  +    +          + ++E++I+ + +       ++ TP
Sbjct: 145 FVTDDAQRAPFARALVDKLVNFSFEDAFAESYDFFAGVFEYVIKDYNTNGGGVYAEYYTP 204

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  +   LL+     L           YDP  GTG  L    + + +           
Sbjct: 205 HAIAVIMARLLVGDRQDLHNIE------CYDPAAGTGTLLMALAHQIGE--------DRC 250

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-GSTLSKDLFTGKRFHYCLSNP 299
               Q+   +++ +    +++  L S     +  +       +S D  + ++F Y + NP
Sbjct: 251 TIFAQDRSQKSNKMLKLNLILNGLVSSLDHAIQGDTLTDPFHMSDDGKSLRQFDYEVCNP 310

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNG 352
           PF   + + ++ +          RF  G+P +             FL H+ N ++     
Sbjct: 311 PFNLDFSETRETLAAMP-----ARFWAGIPNVPKKKKESMSIYTCFLQHVLNSMKP---- 361

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+AAIVL +  L      S E ++ + ++   L+  ++++P+++F  T     +    N
Sbjct: 362 NGKAAIVLPTGFLTAKS--SVEGKLLKHIVNERLVYGVISMPSNVFANTGTNVSVVFFDN 419

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            K+ +   KV LI+A+ L    +    K+  +   +   I+D +++++    FS  + Y 
Sbjct: 420 SKSSD---KVILIDASKLGEEYQEGNNKKVRLTPSEIDMIVDTFLNKKTVEDFSVAVSYE 476

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               ++  +         ++   L + E +    +L+   QS++ +
Sbjct: 477 DIEAKKCSLAAGQYFDVKIEYVELTQEEFESKMSELTSNLQSYFDE 522


>gi|333011301|gb|EGK30715.1| hypothetical protein SFK272_0256 [Shigella flexneri K-272]
 gi|333012197|gb|EGK31579.1| hypothetical protein SFK227_5291 [Shigella flexneri K-227]
          Length = 489

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDLIARNFNLDIKNPHQAET 449


>gi|332289273|ref|YP_004420125.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330432169|gb|AEC17228.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 539

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 187/550 (34%), Gaps = 100/550 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
           +   +   +W   + L       ++   +    +L  ++   E  +  V E  ++     
Sbjct: 2   TNNEIVQKLWNLCDVLRD--DGINYNDYLTELVMLLFIKMTYEKEQIFVEEGIEFTTLLP 59

Query: 65  SNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                + F   +G    + Y      LST    +   +    + +   NA          
Sbjct: 60  EGCRWDDFNDKSGSELLNHYKRILLLLSTGKDGDKSVHHNPLLLAIYANASTS------- 112

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                L++   L +I K F  ++    ++    + ++YE L+ +  +E   GA  + TPR
Sbjct: 113 -----LKEPKHLEQIIKAFDAMDWF--SMQKDGLGDLYEGLLEKNATETKSGAGQYFTPR 165

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------- 234
            ++++    +           P +   + DP  GT GFL  A  +V      +       
Sbjct: 166 ALINVMVRCI----------QPKVGEIVQDPAAGTAGFLIAADQYVRHQSDDYLDLGDEE 215

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K    +   G EL   T  + +   L+  +E      +     QG+TL          +
Sbjct: 216 RKFQNEVAFQGVELVENTRRLALMNCLLHGIEGGEEGAV----IQGNTLGSAGKDLPNAN 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     +      +              + S+  + FL H+   L+     G
Sbjct: 272 VILANPPFGSSKGGEAAITRDDL-----------TFETSNKQLAFLQHIYRNLQ----EG 316

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS-- 411
           GRAA+VL  + LF    G   +EIR+ L+    +  I+ LPT +F+   + T +   +  
Sbjct: 317 GRAAVVLPDNVLFEANKG---TEIRQDLMSKCNVHTILRLPTGIFYAQGVKTNVLFFNKA 373

Query: 412 ------------NRKTEER---------RGKVQLINATDLWTSIRNEGKKRRIIN----- 445
                         K  E+             Q I   DL T++ N GK+          
Sbjct: 374 TQSQTISVKAGVKEKESEKDAEEVLQKSNDPTQKIWVYDLRTNMPNFGKRTPFTEHYLKA 433

Query: 446 ----------DDQRRQILDIYVSRENGKFSRML-DYRTFGYRRIKVLRPLRMSFILDKTG 494
                        +  + +I  +R  G++S +  D      R     R    +   D   
Sbjct: 434 FEAVFNPTNLPFNQENLAEILSARAEGEWSYVEGDNTLENSRWRCFDREYIKNIKSDSLD 493

Query: 495 LARLEADITW 504
           ++ L+ + T 
Sbjct: 494 ISWLKDNSTM 503


>gi|222036089|emb|CAP78834.1| restriction modification enzyme Msubunit [Escherichia coli LF82]
 gi|312948975|gb|ADR29802.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 489

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 33  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 84  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 143 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPA 190

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 191 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 398 FEEFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|330814745|ref|YP_004362920.1| N-6 DNA methylase [Burkholderia gladioli BSR3]
 gi|327374737|gb|AEA66088.1| N-6 DNA methylase [Burkholderia gladioli BSR3]
          Length = 474

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 96/503 (19%), Positives = 184/503 (36%), Gaps = 77/503 (15%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
           G        L+ +      + + +                    + +    TS +     
Sbjct: 31  GDYTFAMLFLKCISEGALQSSTVLT---------------IPDASRFESLYTSRF---QA 72

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPDTV 150
           G     +   + + + +     +FE   F S+    E A  L+ ++ + F+   L     
Sbjct: 73  GQQGHVDEALALLEAANPTLGGVFEQIRFGSSGLGNEYADRLIRRLIEEFADDALCFRGT 132

Query: 151 PDRV---MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
              V   +    + LI     E    ++D  TP ++  + + ++          SP    
Sbjct: 133 AADVAPCVDFACDTLI-DLAFEARRRSDDSFTPTEIAGVVSRIV----------SPVQGE 181

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ DP CG G FL              ++   L   GQE++  T A+    + +R     
Sbjct: 182 TVCDPCCGVGTFLVAC---------QRRVDGDLGLFGQEMDGRTWAIAKMNLFMRG---- 228

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               L + I+ G TL            ++F   +S PP G +    ++A+         G
Sbjct: 229 ---QLEQQIEWGDTLRYPRLLDSEGKLRKFDVVVSMPPLGARAWGQEEAIYDH-----YG 280

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  G+P        F+ H+   L+      GR A+V+    LF G A   E +IR  LL
Sbjct: 281 RYRRGIPPRFSPEFAFISHMVETLDPL---HGRLAVVVPFGVLFRGAA---EKQIRERLL 334

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             +L++A++ALP  L   T+I   + +L   +       V  I+A   + +    GK R 
Sbjct: 335 RENLVDAVIALPPRLLGHTSIPLAIMVLRTGRAVS---DVFFIDAGRAYEA----GKTRN 387

Query: 443 IINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRR--IKVLRPLRMSFILDKTGLARLE 499
           ++ +    +I   Y  R++  +F+R +           + V R + ++ +     LA L 
Sbjct: 388 VLTEQHIERIEHTYRERQDVPRFARKVSIEEIFSHETSLNVARYVDVTEVEAPVNLAALN 447

Query: 500 ADITW--RKLSPLHQSFWLDILK 520
            +  +   +L+ L     + + +
Sbjct: 448 EERQFLIEELTELEARMSVLLSR 470


>gi|194435169|ref|ZP_03067401.1| type I restriction-modification system, M subunit [Shigella
           dysenteriae 1012]
 gi|194416587|gb|EDX32724.1| type I restriction-modification system, M subunit [Shigella
           dysenteriae 1012]
 gi|320179361|gb|EFW54319.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella boydii ATCC 9905]
          Length = 493

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 195 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 249

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 250 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 295 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 347

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 348 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 FEEFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 453


>gi|154245044|ref|YP_001416002.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
 gi|154159129|gb|ABS66345.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
          Length = 486

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 157/452 (34%), Gaps = 73/452 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T S   +   +W     L  D     + + +   T L  L+   E        +   +G
Sbjct: 1   MTSSTTDIVAKLWSLCHVLRDDGVT--YNEYVTELTFLLFLKMLEETGHEERLPEGWRWG 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                     K  G    +  +  L  LG     + L   I               F+  
Sbjct: 59  -------LLAKKEGMDQLDYYKAMLLALGKAP--DKLVGAI---------------FTDA 94

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +L K   L  +  +   ++    +  +  +  +YE L+ +  ++   GA  + TPR +
Sbjct: 95  QTKLRKPTNLKALTSSIDLLDWF--SAREEGLGTLYEGLLEKNAADKKSGAGQYFTPRPL 152

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235
           +     L+           P     + DP  GT GFL  A  ++ D              
Sbjct: 153 IDCIVRLM----------KPQPGEIVQDPAAGTAGFLVAADRYIKDRTDDLFELTEAQGF 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P+TH +C+  +L+  +E          ++   TLS D     + H  
Sbjct: 203 FQRNNAFVGAELVPDTHRLCLMNLLLHGIEG--------GVESMDTLSPDGEGLPKAHLI 254

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K    +          +           S+  + F+ H+   L      GGR
Sbjct: 255 LTNPPFGTKKGGGRPTRTDFSVTAD----------TSNKQLAFVEHIVRSLRP----GGR 300

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF    G     +R WL+E   +  I+ LPT +F+   + T +        
Sbjct: 301 AAVVVPDNVLFEDNTG---RRLRSWLMELCDLHTILRLPTGIFYAQGVKTNVLFFRRGTN 357

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +  +  ++ +   D+  ++   GK R +   D
Sbjct: 358 D--KANIKAVWVYDMRANMPAFGKTRPLTIAD 387


>gi|293408035|ref|ZP_06651875.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354]
 gi|291472286|gb|EFF14768.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354]
          Length = 493

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 195 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 249

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 250 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 295 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 347

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 348 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 453


>gi|291086066|ref|ZP_06354740.2| type I restriction-modification system, M subunit [Citrobacter
           youngae ATCC 29220]
 gi|291069286|gb|EFE07395.1| type I restriction-modification system, M subunit [Citrobacter
           youngae ATCC 29220]
          Length = 493

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    ++   +E     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQSPIPQRYLWRTWAANAEGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 195 CGTGGFLACAFDHVKNNYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 249

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 250 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 295 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 347

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 348 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDEVIARNFNLDIKNPHQAET 453


>gi|294850060|ref|ZP_06790798.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus A9754]
 gi|294823194|gb|EFG39625.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus A9754]
          Length = 311

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 126/333 (37%), Gaps = 49/333 (14%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 278

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           I+   TL    F G  F   ++NPP+  KW  D
Sbjct: 279 IRNDDTLENPAFLGNTFDAVIANPPYSAKWTAD 311


>gi|260858510|ref|YP_003232401.1| type I restriction-modification enzyme M subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757159|dbj|BAI28661.1| type I restriction-modification enzyme M subunit [Escherichia coli
           O26:H11 str. 11368]
          Length = 493

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 174/471 (36%), Gaps = 62/471 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +  V E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GFL  A +HV +        H  +      HG E +   H +    ML+  +E      +
Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE------V 250

Query: 273 SKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   K 
Sbjct: 251 PVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMKT 298

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +  IV
Sbjct: 299 RETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIV 351

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQR 449
            LP  +F   T I T L   +  +        + I   +  + +      K + +  ++ 
Sbjct: 352 RLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMKFEEF 405

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 406 QAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 453


>gi|218698187|ref|YP_002405854.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli 55989]
 gi|218703040|ref|YP_002410669.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli IAI39]
 gi|300815958|ref|ZP_07096181.1| N-6 DNA Methylase [Escherichia coli MS 107-1]
 gi|218354919|emb|CAV02127.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli 55989]
 gi|218373026|emb|CAR20915.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli IAI39]
 gi|281603674|gb|ADA76658.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 2002017]
 gi|300531165|gb|EFK52227.1| N-6 DNA Methylase [Escherichia coli MS 107-1]
 gi|324005095|gb|EGB74314.1| N-6 DNA Methylase [Escherichia coli MS 57-2]
          Length = 501

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 45  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 95

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 96  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 155 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 202

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 203 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 258 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 302

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 303 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 355

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 356 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 409

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 410 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 461


>gi|188492484|ref|ZP_02999754.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|188487683|gb|EDU62786.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
          Length = 489

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 174/471 (36%), Gaps = 62/471 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +  V E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GFL  A +HV +        H  +      HG E +   H +    ML+  +E      +
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE------V 246

Query: 273 SKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   + 
Sbjct: 247 PVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEMQT 294

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +  IV
Sbjct: 295 RETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIV 347

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQR 449
            LP  +F   T I T L   +  +        + I   +  + +      K + +  ++ 
Sbjct: 348 RLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMKFEEF 401

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 QAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 449


>gi|91792593|ref|YP_562244.1| N-6 DNA methylase [Shewanella denitrificans OS217]
 gi|91714595|gb|ABE54521.1| N-6 DNA methylase [Shewanella denitrificans OS217]
          Length = 501

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 171/457 (37%), Gaps = 74/457 (16%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---------------NNLESYIASFSD 109
              + E  +++  Y      E+      + N                   L++  A    
Sbjct: 40  DAQEQELELELDNYREPIPEEFLWRHWAADNQGITGDELLEFVNDELFPKLKNLTAPIDK 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +       FS     ++   LL ++    + I+   D+    +  ++YE +++   S 
Sbjct: 100 NPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSNERHLFGDLYEQILKDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA- 228
            +  A +F TPR +     A+            P +  ++ DP CGTGGFL  A +HV  
Sbjct: 159 GN--AGEFYTPRAITKFIVAVT----------DPKLGESIMDPACGTGGFLACAFDHVKA 206

Query: 229 ---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                   H+        G E +   H +C   M++  +E      +   I+ G+TL+K 
Sbjct: 207 NYVKTADDHQTLQQ-QIFGVEKKQLPHLLCTTNMMLHGIE------VPVQIRHGNTLNKP 259

Query: 286 LFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           L +  ++    ++NPPFG     ++D +EK           P   +  + + LFL  +  
Sbjct: 260 LSSWDEQVDVIITNPPFGG---TEEDGIEKNF---------PSEFQTRETADLFLQLIIE 307

Query: 345 KLELPPNG--------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            L  P  G        GGRAA+VL    LF       +++I++ L++   +  IV LP  
Sbjct: 308 VLAEPSAGNEPSALKSGGRAAVVLPDGTLF---GEGVKTKIKKMLMDECNLHTIVRLPNG 364

Query: 397 LF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILD 454
           +F   T I T +   +     +       I   +  + +      K + +  ++    L 
Sbjct: 365 VFNPYTGIKTNILFFTKGTPTKD------IWFYEHPYPAGVKNYNKTKPMKFEEFETELS 418

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +    +G  SR+         ++ +   +  ++ LD
Sbjct: 419 WWGDEADGFASRV---ENEQAWKVSIEDIINRNYNLD 452


>gi|325498693|gb|EGC96552.1| type I restriction-modification system, M subunit [Escherichia
           fergusonii ECD227]
          Length = 493

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 175/473 (36%), Gaps = 66/473 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFL  A +HV +                HG E +   H +    ML+  +E     
Sbjct: 195 CGTGGFLACAFDHVKNKYVKSIADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIE----- 249

Query: 271 DLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P   
Sbjct: 250 -VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAEM 296

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +  
Sbjct: 297 QTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHT 349

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDD 447
           IV LP  +F   T I T L   +  +        + I   +  + +      K + +  +
Sbjct: 350 IVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMKFE 403

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           + +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 404 EFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 453


>gi|227885168|ref|ZP_04002973.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300980748|ref|ZP_07175163.1| N-6 DNA Methylase [Escherichia coli MS 45-1]
 gi|301048309|ref|ZP_07195340.1| N-6 DNA Methylase [Escherichia coli MS 185-1]
 gi|227837997|gb|EEJ48463.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300299817|gb|EFJ56202.1| N-6 DNA Methylase [Escherichia coli MS 185-1]
 gi|300409163|gb|EFJ92701.1| N-6 DNA Methylase [Escherichia coli MS 45-1]
 gi|307556580|gb|ADN49355.1| type I restriction-modification system, M subunit [Escherichia coli
           ABU 83972]
 gi|315293300|gb|EFU52652.1| N-6 DNA Methylase [Escherichia coli MS 153-1]
          Length = 501

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 45  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 95

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 96  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 155 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 202

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 203 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 258 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 302

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 303 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 355

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 356 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 409

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 410 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 461


>gi|24115564|ref|NP_710074.1| putative restriction modification enzyme M subunit (methylase)
           [Shigella flexneri 2a str. 301]
 gi|24054895|gb|AAN45781.1| putative restriction modification enzyme M subunit (methylase)
           [Shigella flexneri 2a str. 301]
          Length = 501

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 45  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 95

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 96  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 155 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 202

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 203 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 258 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 302

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 303 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 355

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 356 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHQYPAGVKNYSKTKPMK 409

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 410 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 461


>gi|110808125|ref|YP_691645.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 5 str. 8401]
 gi|110617673|gb|ABF06340.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 5 str. 8401]
          Length = 496

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 40  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 90

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 91  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 149

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 150 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPA 197

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 198 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 252

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 253 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 298 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 350

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 351 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 404

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 405 FEEFQAEIDWWGNEADGFASRV---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 456


>gi|4210349|emb|CAA10699.1| HsdM protein [Escherichia coli]
          Length = 325

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 30/251 (11%)

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           + G    ++  V    SH      +  +GQEL   T+ +    + IR L +      +  
Sbjct: 1   SAGMFVQSVKFVE---SHQGKSRDIALYGQELTATTYKLAKMNLAIRGLSA------NLG 51

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +   T   D     +  Y L+NPPF  K  +++  + K+ +       G  +P   + +
Sbjct: 52  ERPADTFFSDQHPDLKADYILANPPFNLKDWRNEAELTKDPRFA-----GYRMPPTGNAN 106

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             +++H+ +KL    +  G A  VL++  +      SGE EIR  ++ENDLI+ ++ALP 
Sbjct: 107 YGWILHMLSKL----SANGTAGFVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPG 160

Query: 396 DLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            LF+ T I   LW ++  K         +R+G+   I+A +L T I    +  + +  + 
Sbjct: 161 QLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMI---SRTTKELTAED 217

Query: 449 RRQILDIYVSR 459
              I D Y + 
Sbjct: 218 IATIADTYHAW 228


>gi|191170740|ref|ZP_03032292.1| type I restriction-modification system, M subunit [Escherichia coli
           F11]
 gi|190908964|gb|EDV68551.1| type I restriction-modification system, M subunit [Escherichia coli
           F11]
          Length = 493

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 37  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 88  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 147 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPA 194

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 195 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 249

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 250 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 295 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 347

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 348 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 402 FEEFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 453


>gi|300992648|ref|ZP_07179962.1| N-6 DNA Methylase [Escherichia coli MS 200-1]
 gi|52420940|emb|CAH55819.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli]
 gi|300305269|gb|EFJ59789.1| N-6 DNA Methylase [Escherichia coli MS 200-1]
 gi|324014075|gb|EGB83294.1| N-6 DNA Methylase [Escherichia coli MS 60-1]
          Length = 501

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 70/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L     N       +    S+   ++     SL    +
Sbjct: 45  LLFLKIFDA---------QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVN 95

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +    L++  A    N +       FS     ++   LL ++    + I+         
Sbjct: 96  DDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERH 154

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++   S  +  A +F TPR V       +           P +  ++ DP 
Sbjct: 155 LFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPA 202

Query: 214 CGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           CGTGGFL  A +HV +        H  +      HG E +   H +    ML+  +E   
Sbjct: 203 CGTGGFLACAFDHVKNKYVKSVADHQTLQQ--QIHGVEKKQLPHLLATTNMLLHGIE--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P 
Sbjct: 258 ---VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PA 302

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   +
Sbjct: 303 EMQTRETADLFLQLIVEVL----AKNGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNL 355

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L   +  +        + I   +  + +      K + + 
Sbjct: 356 HTIVRLPNGVFNPYTGIKTNLLFFTKGQP------TKEIWFYEHPYPAGVKNYSKTKPMK 409

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ +  +D + +  +G  SR+         ++ +   +  +F LD     + E 
Sbjct: 410 FEEFQAEIDWWGNEADGFASRI---ENEQAWKVSIDDVIARNFNLDIKNPHQAET 461


>gi|288947722|ref|YP_003445105.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Allochromatium vinosum DSM 180]
 gi|288898238|gb|ADC64073.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Allochromatium vinosum DSM 180]
          Length = 487

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/552 (19%), Positives = 188/552 (34%), Gaps = 73/552 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E       +   +W     L  D     + + +   T L  L+   E       E  L
Sbjct: 1   MSETVTR--DIVAKLWNLCHILRDDGVT--YNEYVTELTFLLFLKMMRETGH----ESRL 52

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G    +L S   +    +Y     +L +   T+ +  L                   F
Sbjct: 53  PLGYRWEELASRTGLDQLEYYRDLLLNLGSTKKTHDQTILSI-----------------F 95

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +L K   L  +      ++       +  + N+YE L+ +  +E   GA  + TP
Sbjct: 96  ADANTKLRKPANLKALTTAIDKLDWF--EAREEGLGNLYEGLLEKNAAEKKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++     L+           P     + DP  GTGGFL  A +++        +    
Sbjct: 154 RPLIDCLVRLM----------KPKPGEVIQDPAAGTGGFLVAADHYMKQNDKFFDLDEKE 203

Query: 241 VPHGQ-------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +   Q       EL P+ H +C+  +++  +E               TLS D     +  
Sbjct: 204 ILFQQYSAYKGAELVPDAHRLCLMNLILHGIEGTVTCS--------DTLSPDGLALGKAD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K    K          +           S+  + F+ H+   L+     G
Sbjct: 256 LILSNPPFGTKKGGGKPNRADFSITSD----------TSNKQLAFVEHIVRALK----KG 301

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF    G     +R W++E   +  I+ LPT +F+   + T +   +  
Sbjct: 302 GRAAVVVPDNVLFEDNTG---RRLRTWMMELCDLHTILRLPTGIFYAQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           +T+  +   + +   DL  ++   G K R +      +    + +   GK  R     + 
Sbjct: 359 QTD--KANTESVWVYDLRANMPAFG-KTRPLTVKDFEEFEAAFGNDPYGKAERTDQGESG 415

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            +R     +    +  LD   L     DI   +L+         +           G  E
Sbjct: 416 RFRCFTREKIKERNDNLDIAWLRDENDDIE-ERLTEPEDIAAAIMGHLRAALEEIEGLTE 474

Query: 534 SFVKESIKSNEA 545
               E++   EA
Sbjct: 475 EIEVEALVPEEA 486


>gi|167854766|ref|ZP_02477544.1| glucose-inhibited division protein B [Haemophilus parasuis 29755]
 gi|167854064|gb|EDS25300.1| glucose-inhibited division protein B [Haemophilus parasuis 29755]
          Length = 515

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 192/561 (34%), Gaps = 73/561 (13%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDF--GKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W   + L  D   + D+    V+L    ++ +    E      + ++    
Sbjct: 2   TNNEIVQKLWNLCDVLRDDGINYNDYLTELVML--LFIKMVHEK-EQLFIEEKTEFKPLL 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 E     +G +  +     L  L ST   N+          N   +   +  ++ 
Sbjct: 59  PEGCRWEDLSGKSGINLLDNYRRMLLVL-STGKEND------EIVHNNPLLLAIY--ANA 109

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L +   L ++ +NF  ++    +     + ++YE L+ +  +E   GA  + TPR +
Sbjct: 110 KTSLTQPKHLEQLVRNFDEMDWF--SAQKDGLGDLYEGLLEKNATETKSGAGQYFTPRAL 167

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           ++     +          +P +   + DP  GT GFL  A  ++ +    +         
Sbjct: 168 INSMVRCI----------NPVVGEVIQDPAAGTAGFLIAADQYMRNKTDDYFDLSEQDRH 217

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL   T  + +   L+  +E      +     QG++L       K     
Sbjct: 218 FQIHEAFKGVELVTNTRRLALMNCLLHGIEGGSEGAV----IQGNSLGDVGKNLKPADII 273

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG     D      +              + ++  + FL H+   L+     GGR
Sbjct: 274 LANPPFGTSKGGDAVITRDDL-----------TFETTNKQLAFLQHIYRNLK----EGGR 318

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G   ++IR+ L++   +  I+ LPT +F+   + T +       +
Sbjct: 319 AAVVLPDNVLFEAGKG---TDIRKDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFDKV-S 374

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIIN---------------DDQRRQILDIYVSRE 460
            +     Q     DL T++ + GK+                    D  +  I  I  +R+
Sbjct: 375 NDAENSTQKTWVYDLRTNMPSFGKRTPFTEKYLEAFEKVFNPTELDVNKANITMILSARQ 434

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            G++S     +T    R K      +  +   +       D        L +   L    
Sbjct: 435 EGEWSYTEGEQTAENSRWKCFDRTYIRDVKGDSLDISWLKDNAAVSSEDLPEPEELIAEA 494

Query: 521 PMMQQIYPYGWAESFVKESIK 541
               +    G  E F + + K
Sbjct: 495 KAELEAALAGLDELFAELTTK 515


>gi|262066435|ref|ZP_06026047.1| type I restriction enzyme StySPI M protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379862|gb|EFE87380.1| type I restriction enzyme StySPI M protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 474

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 104/497 (20%), Positives = 178/497 (35%), Gaps = 88/497 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   + ++      IL    L+ L          V E+Y   
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKMLAEQDNEAEVGVPEEYRWN 58

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                     VK+ G     T + +L  L  +   NNL                   + +
Sbjct: 59  T--------LVKLDGLELKTTYQKALIDL--SQKENNLAII----------------YRN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +E+   L KI      ++ +  ++      ++YE L+ +  SE   GA  + TPR 
Sbjct: 93  AKTNIEEPANLKKIFSEIDKMDWY--SMDKEDFGDLYEGLLEKNASEKKSGAGQYFTPRV 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK------- 235
           ++     +            P +   + DP  GT GF+  A  ++ +    +        
Sbjct: 151 LIDTIVKVT----------KPQLKERICDPASGTLGFIISANRYIKEKNDDYYGISEEDY 200

Query: 236 -IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      EL P+TH + +   L+  +E         N  QG TLS      K F  
Sbjct: 201 AFQKKEAFSACELVPDTHRLGIMNALLHGVEG--------NFLQGDTLSATGTQLKNFDL 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPPFG K            K GE       +   S+  + FL  +   L L   G  
Sbjct: 253 ILSNPPFGTK------------KGGERATRDDLVFSSSNKQLNFLEIIYRSLNL--TGRA 298

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA +VL  + LF G  G    +IR+ LL    +  I+ LPT +F+   + T +      K
Sbjct: 299 RAGVVLPDNVLFEGGIG---KDIRQDLLNKCNVHTILRLPTGIFYAQGVKTNVLFFDRAK 355

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           ++   G  + I   DL T++ N G K   + +    + +  + + E  +       +   
Sbjct: 356 SD--IGNTKDIWFYDLRTNMPNFG-KTTPLTEKYFEEFISTFDNDEEKE-------KLER 405

Query: 475 YRRIKVLRPLRMSFILD 491
           + +I +   ++  + LD
Sbjct: 406 WTKISIDEVIKKDYSLD 422


>gi|20807981|ref|NP_623152.1| Type I restriction-modification system methyltransferase subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516555|gb|AAM24756.1| Type I restriction-modification system methyltransferase subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 507

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/455 (21%), Positives = 163/455 (35%), Gaps = 59/455 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAF 62
            +  SLAN IW+  + +  D   T   + +  L     LR L+   E       E     
Sbjct: 5   QTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEE-------EWEAQA 57

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFS 121
             +       +       +  ++   +          L  Y+ S   D  +         
Sbjct: 58  QIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSE 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             +        L  + +  + I  H        +S +YE L+RR G+  +  A +F TPR
Sbjct: 118 RNVIVCASGYNLKDVIQIVNEINFHSQD-DIFTVSQVYEELLRRLGN-ENRLAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPP 238
            VV     L+           P +   +YDP CGT GFL +A   +         H+I  
Sbjct: 176 PVVRFVVELV----------DPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHRILQ 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQE +P    + +  M++  +       + + +++ +         +RF   ++N
Sbjct: 226 ERTFFGQEKKPVPAFLGLVNMMLHGVT------VPRVMRRNTLEENIRNVSERFDVVVTN 279

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG          E  H             + +   +LFL H+  KL+  P  G R  +
Sbjct: 280 PPFG--------GTEGRHIQQNFP------IQSNATELLFLQHIMKKLK--PRDGARCGM 323

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           V+    LF G A    +E++R LLE   +  +V+LP   F   +++ T L         E
Sbjct: 324 VVPEGTLFRGGA---FAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFF------E 374

Query: 418 RRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQ 451
           R G  + I   +L       +  K   I D+   +
Sbjct: 375 RPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEE 409


>gi|50122044|ref|YP_051211.1| subunit M of type I restriction-modification system [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612570|emb|CAG76020.1| subunit M of type I restriction-modification system [Pectobacterium
           atrosepticum SCRI1043]
          Length = 490

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 169/452 (37%), Gaps = 59/452 (13%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+    +   
Sbjct: 83  NDDLFPILKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       +           P +  ++ DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  A +HV D     +          +G E +   H +C   ML+  +E    
Sbjct: 190 ACGTGGFLACAFDHVKDNYVITTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLIIEVL----ADKGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIIN 445
            IV LP  +F   T+I T +   +  +  ++      +   +      ++N  K + +  
Sbjct: 345 TIVRLPKGVFNPYTSIKTNILFFTKGQPTKQ------VWFYEHPYPDGVKNYSKTKPMKF 398

Query: 446 DDQRRQI------LDIYVSRENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLAR 497
           ++ + +I       D + SRE  K +  +       R     +  P +   I        
Sbjct: 399 EEFQTEIDWWGNEADGFASREENKQAWKVSIDDIIARNFNLDIKNPYQGETISHDPDELL 458

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
            +      ++S L       +   +       
Sbjct: 459 AQYQTQQAEISELRNQLRDILGAALAGNKGAN 490


>gi|260773573|ref|ZP_05882489.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio metschnikovii CIP 69.14]
 gi|260612712|gb|EEX37915.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio metschnikovii CIP 69.14]
          Length = 510

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 176/480 (36%), Gaps = 74/480 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
              ++   IW     L G      + + +  L     L+         +    EK +  G
Sbjct: 2   KQDNIIQKIWSLCNILRG--DGITYYQYVSELSYLLFLK-------IAQENGSEKLIPKG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +DLES+    G       +  L+ LG++   N +   I +F     +  E+      
Sbjct: 53  YRWVDLESY---KGDGLLGFYQEMLTHLGAS-VENEVVKAIYAFPTTVFSHSENLK---- 104

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                       +    S IE H   V      ++Y  LI +   +   GA  + TPR +
Sbjct: 105 -----------AVIDGISKIEWH--QVGKDGFGDVYSGLIDKSAQDTRSGAGQYFTPRSL 151

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V+    L+           P +   + DP  G+GGFL  A +++ +     K       +
Sbjct: 152 VNTIVRLI----------QPNLGELIQDPATGSGGFLVSADSYIRNKYLREKYKANPPKY 201

Query: 244 -GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E+E  T  +C+    +  L++        NI  G  L+ D+         ++NPPFG
Sbjct: 202 QGVEIEKNTRRICLMNTFLHELDA--------NIIYGDALTDDVAELAEADVIIANPPFG 253

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K              G+            +  + FL H+   L+     GGRAA+VL  
Sbjct: 254 NK------------AGGQRPLRNDIPFPNVNKQLAFLQHIYLGLKP----GGRAAVVLPD 297

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK- 421
           + LF    G   +E+RR L+    +  I+ LPT +F+   + T +   +    +++  + 
Sbjct: 298 NVLFEAGVG---TEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFFTKGSVKDKYQEE 354

Query: 422 --VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
              Q +   DL T++ + GK+    N D      ++      G F ++   +  G  +  
Sbjct: 355 SCTQNVWVYDLRTNMPSFGKRTPFGNSDIGFTPEELGTDPHMGAFEKVFGDKPDGTSKRT 414


>gi|108800737|ref|YP_640934.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119869876|ref|YP_939828.1| N-6 DNA methylase [Mycobacterium sp. KMS]
 gi|108771156|gb|ABG09878.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119695965|gb|ABL93038.1| N-6 DNA methylase [Mycobacterium sp. KMS]
          Length = 429

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 162/427 (37%), Gaps = 47/427 (11%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +           +     + A L   I                 +  + YE L+ +  S
Sbjct: 19  PSNPGTLGTIYRKAQNRVQDPAKLKRLIVDLIDKENWSAS--GTDLKGDAYEELLAKGAS 76

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +   GA  + TPRD++     ++           P +  T+ DP CGTGGFL  A  HVA
Sbjct: 77  DKGSGAGQYFTPRDLIRAIVDVI----------DPSVADTVVDPACGTGGFLLVAHEHVA 126

Query: 229 DCGS-----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +                   G EL   T  +    +L+  + +    D    I+    L 
Sbjct: 127 EEAGKLTPTQRNHLRDKFVTGYELVDGTARLAAMNLLLHGIGT---ADGPSLIEVRDALI 183

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            D   G+R+   LSNPPFG+K        + +E ++         +   S+  + FL H+
Sbjct: 184 AD--PGQRWSVVLSNPPFGRKSSLTMVGADGREARDDVEIERQDFVVTTSNKQLNFLQHI 241

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L++     GRAA+VL  + LF G AG     +RR LL++  +  ++ LPT +F+   
Sbjct: 242 MTILDI----NGRAAVVLPDNVLFEGGAGE---TLRRKLLDDFDLHTMLRLPTGIFYAQG 294

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +   +     R+  E+    +L    DL T+     K+ R+     RR  LD +V     
Sbjct: 295 VKANVLFFDKRQANEQPWTSKL-WVYDLRTNQHFTLKQNRL-----RRHHLDGFVD---- 344

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILKP 521
                  Y T   R  +V      +F  D      ++  DITW +   L  +  L   + 
Sbjct: 345 ------SYLTGKPREERVESERWKAFTYDDLIARDKVNLDITWLRDESLEDADNLPAPEV 398

Query: 522 MMQQIYP 528
           + ++I  
Sbjct: 399 IAREIVE 405


>gi|319950292|ref|ZP_08024212.1| N-6 DNA methylase [Dietzia cinnamea P4]
 gi|319436048|gb|EFV91248.1| N-6 DNA methylase [Dietzia cinnamea P4]
          Length = 504

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 166/492 (33%), Gaps = 69/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+    A  L + +W     L  D     ++ + +     L+                 
Sbjct: 1   MTD----ARRLVDKLWSYCNVLRDDGVGVIEYTEQLTYLLFLKMAH-------------- 42

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFED 117
                     E   +          EYS   L           Y    +     + +   
Sbjct: 43  ----------ERATRPLKPLQIVPEEYSWQRLVDAQGDELEFEYTRMLTGLAKERGVVGT 92

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F     R++    L +I  +    E +       +  + YE L+ +   +   GA  +
Sbjct: 93  I-FRKAQNRIQDPAKLRRIVVDLIDKE-NWSQSGTDIQGDAYESLLAKGAQDKGSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----- 232
            TPR ++     ++           P +  T+ DP CGTGGFL  A  H A   S     
Sbjct: 151 FTPRPLIQAIVDVI----------QPTIEDTVVDPACGTGGFLLVAHEHAAGTASSMTPT 200

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             HK+       G EL   T  +    +L+  + +     L +       L  D   G R
Sbjct: 201 QRHKLQEKFA-TGFELVDGTARLAAMNVLLHGMGTANGESLIEVR---DALVAD--PGHR 254

Query: 292 FHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +   L+NPPFG+K      A +  + +          +   S+  + F+ H+   L+   
Sbjct: 255 WSVVLTNPPFGRKSSVTMVAADGSQTREDREIERQDFVATTSNKQLNFVQHIMTILDT-- 312

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRAA+VL  + LF G AG     IRR LL++  +  ++ LPT +F+   +   +   
Sbjct: 313 --NGRAAVVLPDNVLFEGGAGE---TIRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFF 367

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFS 465
             +         + +   DL T+ ++   K+  +      + ++ Y       R   +  
Sbjct: 368 DKKVARPGTPWTEKLWVYDLRTN-KHFTLKQNPLRRSDLDEFVEAYLPGRHHERTESERW 426

Query: 466 RMLDYRTFGYRR 477
           +   Y     R 
Sbjct: 427 KPFTYDELVARD 438


>gi|227878602|ref|ZP_03996525.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256843208|ref|ZP_05548696.1| type I restriction modification system [Lactobacillus crispatus
           125-2-CHN]
 gi|256850434|ref|ZP_05555862.1| type I restriction modification system [Lactobacillus crispatus
           MV-1A-US]
 gi|262046415|ref|ZP_06019377.1| type I restriction modification system [Lactobacillus crispatus
           MV-3A-US]
 gi|293382103|ref|ZP_06628049.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|312977434|ref|ZP_07789182.1| type I restriction-modification system, M subunit [Lactobacillus
           crispatus CTV-05]
 gi|227861808|gb|EEJ69404.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256614628|gb|EEU19829.1| type I restriction modification system [Lactobacillus crispatus
           125-2-CHN]
 gi|256712831|gb|EEU27824.1| type I restriction modification system [Lactobacillus crispatus
           MV-1A-US]
 gi|260573286|gb|EEX29844.1| type I restriction modification system [Lactobacillus crispatus
           MV-3A-US]
 gi|290921338|gb|EFD98394.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|310895865|gb|EFQ44931.1| type I restriction-modification system, M subunit [Lactobacillus
           crispatus CTV-05]
          Length = 483

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 100/547 (18%), Positives = 183/547 (33%), Gaps = 78/547 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L  D     +   I   T +  L          + ++        
Sbjct: 2   NNQEIVQKLWNECNILRDDGVS--YQDYITELTYILFL---------KMSKEQGEQDDIP 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              +    V+      ++ Y    L   N        I S   +A               
Sbjct: 51  QKYQWDNLVSKEGLELSNFYRQLLLDLGNPEVVNSPRINSIYADASTSIH---------- 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             K   L KI K+   ++    +  D  + ++YE L+ +  SEV  GA  + TPR ++++
Sbjct: 101 --KPADLEKIIKDIDALDWW--SARDEGLGDLYEGLMEKNASEVKSGAGQYFTPRVLINM 156

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              +            P +     DP  GT GF+  A  ++ D    +        +   
Sbjct: 157 MVRMT----------QPKIGDRCNDPAAGTFGFMVAADRYLKDQTDDYSTLSADKEEFQV 206

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL   TH + +    +  ++          ++ G +LS +    K F   L+N
Sbjct: 207 KEAFSGMELVETTHRLAMMNEYLHGMDG--------RLELGDSLSSNGKWMKDFDVVLTN 258

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K   D      +              K S+  + FL  + N L+   NG  RAA+
Sbjct: 259 PPFGTKKGSDDSVSRDDL-----------TYKTSNKQLNFLQIIYNSLKH--NGKARAAV 305

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+  + LF    G     IR+ LL    +  I+ LPT +F+   + T +   +  +++  
Sbjct: 306 VVPDNVLFADGVGEA---IRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGESD-- 360

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +   +     D+   +R+ G KR  ++D    +   ++   +  K     D       R 
Sbjct: 361 KDNTKETWIYDMRHQMRSFG-KRNPLSDKDFAEFEKLFCVDDRSKRKETWDKEKNSNGRW 419

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                 R   I +         DI+W      H +    + + + +           + E
Sbjct: 420 ------RKFTIDEILKRPNTSLDISWMNDEEEHDN--RSLKEILDEMNDKSKAIRDAIAE 471

Query: 539 SIKSNEA 545
             K+ E 
Sbjct: 472 LNKALEG 478


>gi|262165309|ref|ZP_06033046.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio mimicus VM223]
 gi|262025025|gb|EEY43693.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio mimicus VM223]
          Length = 496

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 180/476 (37%), Gaps = 72/476 (15%)

Query: 38  FTLLRRLECAL-------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +          +  ++ + E+YL    +  D +         F N   +    
Sbjct: 33  LLFLKVFDAQEEELELELDDYKAPINERYLWRNWAA-DAQGITGDKLLEFVNDDLFY--- 88

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                   NL++  A    N +       F      ++   LL ++    + I+   DT 
Sbjct: 89  --------NLKNMAAPVDTNPRGYVVKEAFRDAYNYMKNGTLLRQVINKLNEIDFT-DTQ 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE ++R   S  +  A +F TPR V       L           P +   ++
Sbjct: 140 ERHLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFIVDRL----------DPKLGENVF 187

Query: 211 DPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           DP+CGTGGFLT A+NH+ + G               HG E +   H +C+  +++  +E 
Sbjct: 188 DPSCGTGGFLTCAINHIQEHGKPETSEQYATFQKQFHGVEKKQLPHLLCITNLMLHGIE- 246

Query: 267 DPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +   I+  +TL+K L       +   +NPPFG     ++D +EK           
Sbjct: 247 -----VPSQIKHDNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF--------- 289

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL  +   L+      GRA +VL    LF       +++I++ L E  
Sbjct: 290 PAEMQTRETADLFLQLIIEVLDPA---NGRAGVVLPDGTLF---GEGVKTKIKKLLTEEC 343

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  IV LP  +F   T I T +   +  K  +       +   +  +        K + 
Sbjct: 344 NLHTIVRLPNGVFNPYTGIKTNILFFTKGKPTKD------VWFYEHPYPEGVKNYSKTKP 397

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +  ++ +  +D + + E+G  SR+         ++ +   +  +F LD     + E
Sbjct: 398 MKFEEFQAEIDWWGNEEDGFASRV---ENNHAWKVSIDEIIARNFNLDIKNPYQGE 450


>gi|148977936|ref|ZP_01814489.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium
           SWAT-3]
 gi|145962882|gb|EDK28154.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium
           SWAT-3]
          Length = 496

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 182/476 (38%), Gaps = 73/476 (15%)

Query: 38  FTLLRRLECAL-------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +          +  +S + E+YL +     D E     A   F N   +    
Sbjct: 33  LLFLKVFDAQEEELELELDDYKSPIPEQYL-WRNWAQDAEGITGEALLEFVNDDLFY--- 88

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                    L++  A    N +       FS     ++   LL ++    + I+   D+ 
Sbjct: 89  --------KLKNLTAPVDLNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSS 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE +++   S  +  A +F TPR V       L           P +  ++ 
Sbjct: 140 ERHLFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFIVDRL----------DPKLGESIM 187

Query: 211 DPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           DP  GTGGFL  + +HV D      + H+       HG E +   H +C+  M++  +E 
Sbjct: 188 DPATGTGGFLACSFDHVKDNYVKTAADHQTLQK-QIHGVEKKQLPHLLCITNMMLHGIE- 245

Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +   I+ G+TL+K L +     +   +NPPFG     ++D +EK           
Sbjct: 246 -----VPVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNF--------- 288

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL  +   L+      GRA +VL    LF       +++I++ L E  
Sbjct: 289 PAEMQTRETADLFLQLIIEVLD---ENNGRAGVVLPDGTLF---GEGVKTKIKKMLTEEC 342

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  IV LP  +F   T I T +   +  K  +       +   +  +        K + 
Sbjct: 343 NLHTIVRLPNGVFNPYTGIKTNILFFTKGKPTKD------VWFYEHPYPEGVKNYSKTKP 396

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +  ++ +Q +D + + E+G  SR+         ++ +   +  +F LD     + E
Sbjct: 397 MKFEEFQQEIDWWGNEEDGFASRV---ENNHAWKVPIADIIERNFNLDIKNPYQGE 449


>gi|119510903|ref|ZP_01630026.1| type I restriction-modification system, M subunit, putative
           [Nodularia spumigena CCY9414]
 gi|119464431|gb|EAW45345.1| type I restriction-modification system, M subunit, putative
           [Nodularia spumigena CCY9414]
          Length = 471

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 157/375 (41%), Gaps = 15/375 (4%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    S   L  FIW  A+ L G ++   + +V+LP  +L RL+  LEPT+  V +    
Sbjct: 4   TNTENSHQDLIGFIWTIADKLRGPYRPPQYRRVMLPLIVLGRLDAVLEPTKQDVLDAKAK 63

Query: 62  FGGSNIDLESFVKV---------AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110
           +    +  E+F K               YNTS+++   L   +    +NL +YI  FS  
Sbjct: 64  YEAMGLQGEAFEKAIAKVAIGSDRQQFLYNTSKFTFQELLNDADGIASNLINYINGFSPR 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           A+ IFE F+F S I +L+++  LY I K+F    ++L P  + +  M  ++E L+R+F  
Sbjct: 124 ARDIFEKFNFESEIQKLDESNRLYLIIKDFCKPEVDLSPAQLSNLQMGYLFEELVRKFNE 183

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + +E A D  TPR+V+ L   L+   +  +F++     R++YDPT GTGG L+ +  H+ 
Sbjct: 184 QANEEAGDHFTPREVIRLMVNLVFCEETDVFQQGIY--RSVYDPTLGTGGMLSVSEEHIK 241

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                  +      +  E   E     ++  + + L+       S     G   +     
Sbjct: 242 KQNPEANLGLFGQEYNIEKLDEKRTALISHAVTKGLDPSVPMKDSGIEWLGKIPNHWEVI 301

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    +    F  +   D    + ++   + G        I + +     +     + 
Sbjct: 302 KVKHLTKILRGKFTHRPRNDPRFYDGQYPFIQTGDVANANKFIMEYTQTLNENGYAVSKE 361

Query: 349 PPNGGGRAAIVLSSS 363
            P+G     I  +  
Sbjct: 362 FPSGTLVMTIAANIG 376


>gi|145301150|ref|YP_001143991.1| type I restriction-modification system M subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853922|gb|ABO92243.1| type I restriction-modification system M subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 478

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 109/536 (20%), Positives = 185/536 (34%), Gaps = 75/536 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
              ++   IW     L G      + + +  L     L+         +    EK +  G
Sbjct: 2   KQDNIIQKIWGLCNILRG--DGITYYQYVSELSYLLFLK-------IAQENGSEKLIPKG 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              IDLES  +     FY   +  L+ LG+    N +   I +F     +  E+      
Sbjct: 53  YRWIDLESHTEDGLLGFY---QEMLTHLGAY-VENEVVRAIYAFPTTVFSHSENLK---- 104

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                       +    S IE H   V       +Y  LI +   +   GA  + TPR +
Sbjct: 105 -----------AVINGISKIEWH--QVGKDGFGELYSGLIDKSAQDTRSGAGQYFTPRSL 151

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VP 242
           V+    L+           P +   + DP  G+GGFL  A N++ +     K        
Sbjct: 152 VNTILRLI----------QPNLGELIQDPATGSGGFLVSADNYIRNKYPREKYKANPPKC 201

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E+E  T  +C+    +  L++        NI  G  L+ D+         ++NPPFG
Sbjct: 202 QGVEIEKNTRRICLMNTFLHELDA--------NIIYGDALTDDVAELAEADVIIANPPFG 253

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K              G+           ++  + FL H+   L+     GGRAA+VL  
Sbjct: 254 NK------------AGGQRPLRNDIPFPNANKQLAFLQHIYLGLKP----GGRAAVVLPD 297

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK- 421
           + LF    G   +E+RR L+    +  I+ LPT +F+   + T +   +    +++  + 
Sbjct: 298 NVLFEAGVG---TEVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSAKDKYQEE 354

Query: 422 --VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-DYRTFGYRRI 478
              Q +   DL T++ + GK+    N D      ++      G F ++  D      +RI
Sbjct: 355 SCTQNVWVYDLRTNMPSFGKRTPFGNSDIGFTPEELGTDPHLGAFEKVFGDKPDGTSKRI 414

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           +         I            I  R      + F    +           W + 
Sbjct: 415 EGEFSFSAQEIEVDKDAEEENQGIDDRLAHSSWRCFSRYWIAETKGDSLDISWLKD 470


>gi|289423012|ref|ZP_06424832.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156586|gb|EFD05231.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 292

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/316 (23%), Positives = 130/316 (41%), Gaps = 38/316 (12%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A   +      +        +GQE+   T+ +C   M +  +  D       
Sbjct: 5   GSGSLLLKAEKILGRDKIRNG------FYGQEINITTYNLCRINMFLHDIGFDK-----F 53

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           NI    TL        + F   +SNPP+  KW  D + +          RF P   L   
Sbjct: 54  NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDNNPLLIND-----PRFSPAGVLAPK 108

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+
Sbjct: 109 SKADLAFIMHSLSWL----ASNGTAAIVCFPGIMYRGGA---EKKIRKYLIDNNFVDCII 161

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + ++   K +    K   I+A++    + N       +  D   +
Sbjct: 162 QLPPNLFFGTSIATCIMVMKKNKAD---NKTLFIDASNECVKVTN----NNKLTQDNMDK 214

Query: 452 ILDIYVSR-ENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLS 508
           I++ + +R E   FS +  Y           V   +      +K  + +L A+I  +++ 
Sbjct: 215 IVECFANRSEIAHFSHLATYDEISENDYNLSVSTYVEAEDTREKIDIVKLNAEI--KEIV 272

Query: 509 PLHQSFWLDILKPMMQ 524
              Q    +I K + +
Sbjct: 273 AREQVLRDEIAKIIAE 288


>gi|11387194|sp|Q47282|T1ME_ECOLX RecName: Full=Type I restriction enzyme EcoEI M protein;
           Short=M.EcoEI
 gi|304897|gb|AAD15049.1| EcoE type I restriction modification enzyme M subunit [Escherichia
           coli]
          Length = 490

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 156/401 (38%), Gaps = 57/401 (14%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+    +   
Sbjct: 83  NDDLFPTLKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       +           P +  ++ DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  A +HV D     +          +G E +   H +C   ML+  +E    
Sbjct: 190 ACGTGGFLACAFDHVKDNYVKTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLIIEVL----ADKGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIIN 445
            IV LP  +F   T I T +   +  +        + +   +      ++N  K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPDGVKNYSKTKPMKF 398

Query: 446 DDQRRQI------LDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           ++ + +I       D + SRE    +  +       R   +
Sbjct: 399 EEFQAEIDWWGNEADDFASREENNQAWKVGIDDIIARNFNL 439


>gi|326802758|ref|YP_004320576.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650095|gb|AEA00278.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 287

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/288 (22%), Positives = 124/288 (43%), Gaps = 27/288 (9%)

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FH 293
           +   +   GQE+   T+ +    M++  + +D ++     ++ G TL  D  T +   F 
Sbjct: 1   MENSIRYFGQEINTSTYNLAKMNMMLHGVPTDHQK-----LRNGDTLDADWPTDEPTNFD 55

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L NPP+ +KW  DK  ++    +     +G  LP  S     FL+H    L       
Sbjct: 56  IVLMNPPYSQKWSADKGFLD----DPRFAAYGV-LPPKSRADFAFLLHGFYHLRT----D 106

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   IVL    LF    G+ E ++R+ +LEN  I+ ++ LP +LF+ T+I T + +L   
Sbjct: 107 GTMCIVLPHGVLFR---GASEGKLRQAMLENGYIDTVIGLPENLFYNTSIPTTIIVLKKN 163

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           +T      V  I+A+  +  +    K + I+  +   +I+D Y  RE+  K++    Y  
Sbjct: 164 RTSR---DVFFIDASKEFEKV----KTQNILTKEHIDKIIDTYNKREDVDKYAHKASYEE 216

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                  +  P  +    +   +  ++     ++++   +    + L+
Sbjct: 217 IQENDYNLNIPRYVDTFEEPEPIDIVQVSKDMQEINQELEQTTAEFLE 264


>gi|260776598|ref|ZP_05885493.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607821|gb|EEX34086.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
          Length = 510

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 160/463 (34%), Gaps = 66/463 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L   +W     L  D     + + +   T L  L                      
Sbjct: 2   STQDLVAKLWNLCNLLRDDGVS--YHEYMNELTFLVFL-------------------KMA 40

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            + E+ V     +      Y  S L + +    LE Y        +  ++     +S+  
Sbjct: 41  QETETEVDTKSGTVNIPEGYRWSDLKAVDEEIKLEEYKKLLIHLGSHGSLIAQRIYSNAN 100

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             +     L+ +      ++ +   V +  + ++YE L+     EV  GA  + TPR ++
Sbjct: 101 TIIRNTATLHSLVDQIDKLDWY--QVKNEGLGDMYEGLLEINAQEVKSGAGQYFTPRVLI 158

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------ADCGSHHKI 236
           +    L+           P +   + DP  GTGGFL  A +++              +K 
Sbjct: 159 NAMVELM----------KPTLKDVIVDPAAGTGGFLVSANHYMYPDKKKIKELSSKDYKK 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E  P T  + +  M++  +      D    +  G TLS +          L
Sbjct: 209 YQSGTYFGMEFVPMTRRLAMMNMMLHDI---AVNDDKSGVLFGDTLSNEGKDLPDATLIL 265

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG K              G +           +  + FL  + +K+  P   GGRA
Sbjct: 266 ANPPFGNKM------------GGGVPTRDDLEHYTGNKQLAFLHLMYHKILKP---GGRA 310

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKT 415
           A++L  + LF    G     IR  L++   +  I+ LPT +F+   + T +   S     
Sbjct: 311 AVILPDNALFESGIG---KTIRSDLMDKCNLHTILRLPTGIFYAAGVKTNILFFSKPSDV 367

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           ++ +G+ + +   DL  ++   G KR  +      +      S
Sbjct: 368 KKDKGQTKNVWVYDLRANMPKFG-KRTTLIPSHFDEFYKAVGS 409


>gi|158313868|ref|YP_001506376.1| N-6 DNA methylase [Frankia sp. EAN1pec]
 gi|158109273|gb|ABW11470.1| N-6 DNA methylase [Frankia sp. EAN1pec]
          Length = 775

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 94/405 (23%), Positives = 146/405 (36%), Gaps = 46/405 (11%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---SNIYEHLIRRFGSEVSEGAE 175
           D S+ +        L  + +    +E  PD     V      I + L+    +     + 
Sbjct: 179 DMSALLGDTSDVRRLVPLIQILDRLEPVPDAGSGDVAPPAGRIADELLAHAATVGGWRSA 238

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           + +TP  VV  A  L            P     ++DP C  G FL  A +H+   G+   
Sbjct: 239 NVVTPPSVVRTAVRLT----------DPVAGDRVHDPFCRAGEFLVGAADHIRSRGT--- 285

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
             P L   GQE+ P    +    +L+  L ++  R            S D   G  F   
Sbjct: 286 GSPKLTVSGQEINPSLRWLARMNLLLHNLGAEDLRAGWA------LSSPDPQPGGPFEVV 339

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L NPPF     +D D             +  G+P   + +  +L H    L      GGR
Sbjct: 340 LVNPPFNVSGWRDGDQ-------NPDSSWRYGVPPGHNANYAWLQHALACL----AEGGR 388

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A +V+ +       A   ES IR  ++E  +++A+VALP  LF  T+I   LW+L  R  
Sbjct: 389 AVVVMPAGA--GSSANLQESAIRAAMVEEGVVDAVVALPPRLFVSTSIPVTLWVL--RWP 444

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----GKFSRMLDYR 471
                 V  ++A      +    + R  + D+    I + Y +R         SR +D R
Sbjct: 445 SPGHDDVLFVDAHGAGRIV---ERNRSELRDEDVDHIAEAYRNRAARSTGTVLSRPVDRR 501

Query: 472 TFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   +   R L  +        AR+  +   R L  LHQ  
Sbjct: 502 RIRENGYALSPARYLTATTEPVDPLRARVGIEQLRRDLRELHQRA 546


>gi|126665400|ref|ZP_01736382.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
 gi|126630028|gb|EBA00644.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
          Length = 317

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 114/324 (35%), Gaps = 47/324 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A+L   IW  A D+ G     DF + +L     R +        E    ++ 
Sbjct: 1   MT-SIQQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSIN 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L+      D++         F   S+   +   + N+  +L + +A+          
Sbjct: 60  YAALSDEVITPDIKDDAIRTKGYFIYPSQMFANVAKNANSNESLNTDLAAIFAAIEASAS 119

Query: 108 ----SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH------PDTVPDRV 154
                D+ K +F DFD +S        +K   L  + K  +G++         D     +
Sbjct: 120 GYPSEDDIKGLFADFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGHNFYEKSDAAQIDL 179

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP C
Sbjct: 180 FGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPAC 231

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A  HV                GQE+   T+ +    M +  +  D       
Sbjct: 232 GSGSLLLQATKHVGPHFIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----F 280

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLS 297
           NIQ G+TL    F   K F   + 
Sbjct: 281 NIQLGNTLIDPHFLDDKPFDAIVC 304


>gi|298483407|ref|ZP_07001584.1| type I restriction-modification system, M subunit [Bacteroides sp.
           D22]
 gi|299148888|ref|ZP_07041950.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_23]
 gi|298270355|gb|EFI11939.1| type I restriction-modification system, M subunit [Bacteroides sp.
           D22]
 gi|298513649|gb|EFI37536.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_23]
          Length = 476

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 100/547 (18%), Positives = 185/547 (33%), Gaps = 78/547 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   +W  A  L G      F   I   T L  L+   E  +    E  +
Sbjct: 1   MAKSNSNEQGLTKKVWTLATTLAGQGIG--FTDYITQLTYLLFLKMDDENVKLLDEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G      E+ +++ G       E +L  L              S  DN         +
Sbjct: 59  PEGYRW---ENLIELDGLDLIGQYENTLKIL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+    +  +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMINEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++     +            P +  T+ DP CGTGGFL  A +++            L
Sbjct: 156 RSLISAMVDVT----------RPQIGETVCDPACGTGGFLLAAYDYMKKQSQDKGKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +              +  L+
Sbjct: 206 RNKALHGSDNTPLVVTLASMNLYLHGVGTDRSPIICQDSLE-------KEPDILVNVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPSGSVDINRSDF-----------YVETKNNQLNFLQHIMLSLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IR+ LL    +  I+ LPT +F+   +   +   +      
Sbjct: 304 VVLPDNVLFEGGAGEV---IRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFTKG---- 356

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
              + + I   D  T +++       +        +  Y + +    +R+  Y       
Sbjct: 357 --SRTKDIWFYDYRTDVKHTLAT-NPMQRHHLDDFVSCYHAEDIN--ARVETYNAEDNPN 411

Query: 478 IKVLRPL-RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            +  +         DKT L     D++W K       + L  L  ++++           
Sbjct: 412 GRWRKYTCDEIITRDKTSL-----DVSWIKQGGDEVDYSLSELIDILKEKSDNISKAVAE 466

Query: 537 KESIKSN 543
            + + +N
Sbjct: 467 LQKLMAN 473


>gi|323466193|gb|ADX69880.1| Site-specific DNA-methyltransferase (Adenine-specific)
           [Lactobacillus helveticus H10]
          Length = 484

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 186/550 (33%), Gaps = 85/550 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     +   I        L+  +   E     + EKY    
Sbjct: 2   TNQEIVQKLWSECNVLRDDGVS--YQDYITELTYILFLKMSKEQDEEKD--IPEKYRWDN 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             N +                 Y    L   N        I +   NA    +       
Sbjct: 58  LINKEGLELKNF----------YRQLLLDLGNPEVVKSERINAIYANASTAID------- 100

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                +   L KI K+ + ++    +  +  + ++YE L+ +  +EV  GA  + TPR +
Sbjct: 101 -----EPANLEKIIKDINDLDWW--SAREEGLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           +++   +            P +     DP  GT GF+  A  ++ D    +         
Sbjct: 154 INMMVKMT----------EPKIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSELSEEKYD 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P TH + +    +  ++          ++QG +LS +    K F   
Sbjct: 204 FQVKEAFSGMELVPNTHRLAIMNEYLHGMDG--------RLEQGDSLSANGKWMKNFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE         + S+  + FL  + N L+   +G  R
Sbjct: 256 LTNPPFGTK------------KGGERVTRDDLTYETSNKQLNFLQIIYNSLKR--DGKAR 301

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF    G    EIR+ LL    +  I+ LPT +F+   + T +   +    
Sbjct: 302 AAVVVPDNVLFADGVGE---EIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRG-- 356

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           EE +   +     D+   +R+ G KR  +ND    +   ++   +  K     D      
Sbjct: 357 EEDKDNTKETWIYDMRHQMRSFG-KRNPLNDKDFAEFEKLFCVDDRSKRKETWDKEKNPN 415

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            R       R   I +         DI+W      H++    + + +             
Sbjct: 416 GRW------RKFTIDEIKKRTNTSLDISWMSDEEEHETK--SLKEILSDMNEKSKAISEA 467

Query: 536 VKESIKSNEA 545
           + E  K+ E 
Sbjct: 468 IAELNKALEG 477


>gi|10717099|gb|AAG22013.1|AF288037_2 putative HsdM [Streptococcus thermophilus]
          Length = 535

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 88/537 (16%), Positives = 199/537 (37%), Gaps = 73/537 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESF------- 72
           +  ++  +   F   + L          V  +        ++    +  LE         
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAQNVDSENTYEHLVSMSEEDYDWLLEDIGTSTAWM 86

Query: 73  ----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      K     FY T E +L+ +   N  N++ S     +   +   E      
Sbjct: 87  KPNQFIETLHRKQNESDFYETFENTLNQIAIDN--NDIFSVHTDRNTAIRLFDERLITDI 144

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                ++  +   I    + ++             S I+E++I+ +  +      ++ TP
Sbjct: 145 IPDSSKRNEVAKSIINLLARVKFDEAIFSQGFDFFSTIFEYMIKDYNKDGGGTYAEYYTP 204

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +   +L+  D+       G    +++P           MN  +  G         
Sbjct: 205 HSVAKIIADILVGNDNPQNVRIYGTHLLVWEPCL---------MNLASRIG-----VDKA 250

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + Q++  ++  +    +++  L+         NI +G+T+ ++    ++  Y +SNPP
Sbjct: 251 TVYSQDISQKSSNLLRFNLILNGLQHSIH-----NIVEGNTILRNRHP-EKMDYIVSNPP 304

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPPNGG 353
           F   + + +D VE   +  E  RF  G+PK             LF+ H+   L+      
Sbjct: 305 FKLDFSEWRDQVETLPEASE--RFFAGVPKTPKSKKNSMAIYELFVQHIIYSLK----SD 358

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+VL +   F       + +IR+ L++N ++  +V++P+++F  T     +  +  +
Sbjct: 359 GQAAVVLPTG--FITAQNGIDKKIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK 416

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
                +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y  
Sbjct: 417 ----NKGDVVLIDASNLGTKVKESKNQKTVLSPEEEQKIVETFIQKEAVEDFSVTVSYED 472

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQ 525
              +   +         +D   +   + +        KLS L Q       +   Q 
Sbjct: 473 IKEKNYSLSAGQYFDIKIDYVDITAEDFEAKMTAFQNKLSDLFQQSHALEKEIEEQM 529


>gi|295402726|ref|ZP_06812667.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975225|gb|EFG50862.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 485

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 181/489 (37%), Gaps = 66/489 (13%)

Query: 7   SAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +  SL N I    + L       G   +T+    IL    L+ L       +    E  +
Sbjct: 2   TKESLENIIASCTDILRTDDGISGSVHYTEVLSWIL---FLKFLNDK---EKELALEAEV 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFE 116
            F   +  LE   +   +  +  S+            N+L  Y+AS       + + +  
Sbjct: 56  NFEEYDYLLE---EKYRWDNWAISKDLTGDDLINFVNNDLIPYLASLKGEHEKDRREVIS 112

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F     R+    LL  +    + IE +       +MS++YE L+++ G +      +
Sbjct: 113 AI-FKEVTNRVHSGYLLKDVLLKVNQIEFNSSD-DIFIMSHLYESLLQKMGDDGGNS-GE 169

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---H 233
           F TPR VV     ++           P + +T+YDP CGT GFL ++  H+    +    
Sbjct: 170 FYTPRPVVRFMVEMI----------DPQVGKTVYDPACGTCGFLVESYEHMKKQANTPEK 219

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            KI      +GQE  P  + + +  ML+  ++    R  +   Q      +++   +++ 
Sbjct: 220 VKILAEKTFYGQEKTPLAYLLGLMNMLLHGIDYPQIRKTNTLNQN----IREIDESQKYD 275

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPFG K   ++  ++K               +     +LFL ++   L+      
Sbjct: 276 YILANPPFGGK---EQKIIQKNF-----------PVEAQATELLFLQYIMKTLKF----D 317

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           G+A ++L    LF          ++  LL+   +  IV+LP  +F   + + T +     
Sbjct: 318 GKAGVILPEGVLFR--TNEAYKTVKEELLQKFNVHTIVSLPAGVFLPYSAVKTSIIFF-- 373

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
               +R    + I    +      +  K   I+ +   +   ++  R N + S ++    
Sbjct: 374 ----DRTTSTKDIWFYQVPLIDGKKLTKSNGISKEHFEEARKLFKERPNTENSWLVPVEE 429

Query: 473 FGYRRIKVL 481
                  + 
Sbjct: 430 VIKNEYNLS 438


>gi|253583389|ref|ZP_04860587.1| type I restriction enzyme StySPI M protein [Fusobacterium varium
           ATCC 27725]
 gi|251833961|gb|EES62524.1| type I restriction enzyme StySPI M protein [Fusobacterium varium
           ATCC 27725]
          Length = 479

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 94/502 (18%), Positives = 179/502 (35%), Gaps = 93/502 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           ++  +   +W     L  D   + ++      IL    L+         +  +  KY   
Sbjct: 2   TSNEVVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKMSSELENEEKIGIPLKYRW- 57

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +   K+ G    N  +  L  LG  + +  +                   + +
Sbjct: 58  -------KELAKLEGIELKNNYQKCLLDLGQIDGKLGII------------------YRN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              ++E+   L KI    + I+ +  +V    + ++YE L+ +  SE   GA  + TPR 
Sbjct: 93  AQTKIEEPANLKKIFNEINKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRV 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------- 234
           ++     ++           P +   + DP  GT GF+ +A  ++      +        
Sbjct: 151 LIDSIVRII----------KPELGERICDPAAGTFGFIIEADKYLRRKYDDYFGTKERPV 200

Query: 235 -----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                +          EL P+TH + +   L+  +          N  QG +LS+     
Sbjct: 201 TDEEREFQATEAFSACELVPDTHRLGIMNALLHGING--------NFIQGDSLSETGKQL 252

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   LSNPPFG K            K GE       + + S+  + FL  +   L+  
Sbjct: 253 RNFDLILSNPPFGTK------------KGGERVTRDDLVHETSNKQLNFLQIIYRSLK-- 298

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G  RAA+++  + LF G  G    +IR  LL    +  ++ LPT +F+   + T +  
Sbjct: 299 TTGKARAAVIIPDNVLFEGGVG---KDIRMDLLNKCNLHTVLRLPTGIFYAQGVKTNVLF 355

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
               +T+      +     DL T++ N G K   +      +  + + S E  +      
Sbjct: 356 FERGRTD--VNNTKETWYYDLRTNMPNFG-KNTPLTSSHFEEFEETFDSVEEKE------ 406

Query: 470 YRTFGYRRIKVLRPLRMSFILD 491
            +   +  I +   ++  + LD
Sbjct: 407 -KLERWNLITLEEVIKKDYSLD 427


>gi|227114146|ref|ZP_03827802.1| subunit M of type I restriction-modification system [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 490

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 161/413 (38%), Gaps = 53/413 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++       N +       FS     ++   LL ++    + I+    +   
Sbjct: 83  NDDLFPTLKNLTTPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       +           P +  ++ DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  A +HV +     +          +G E +   H +C   ML+  +E    
Sbjct: 190 ACGTGGFLACAFDHVKEHYVNTTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLVIEVL----ADKGRAAVVLPDGTLF---GEGVKTKIKKLLTEACNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F   T I T +   +  +  ++      +   +  +        K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQPTKQ------VWFYEHPYPDGVKNYSKTKPMKF 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++ +  +D + S  +G  SR          ++ +   +  +F LD     + E
Sbjct: 399 EEFQTEIDWWGSEADGFASR---EENHQTWKVSIDEIIARNFNLDIKNPYQGE 448


>gi|300361583|ref|ZP_07057760.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
 gi|300354202|gb|EFJ70073.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
          Length = 483

 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 186/553 (33%), Gaps = 91/553 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L  D     +   I   T +  L          + ++        
Sbjct: 2   NNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFL---------KMSKEQGQEDDIP 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                   V+       + Y    L   N        I +   NA    +          
Sbjct: 51  EKYHWDNLVSKEGLELKNFYRQLLLDLGNPEIVKSERINAIYANASTAID---------- 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             +   L KI K+   ++    +  +  + ++YE L+ +  SEV  GA  + TPR ++++
Sbjct: 101 --EPANLEKIIKDIDELDWF--SAREEGLGDLYEGLMEKNASEVKSGAGQYFTPRVLINM 156

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPP 238
              +            P +     DP  GT GF+  A  ++ D    +            
Sbjct: 157 MVKMT----------KPEIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSTLSPDQYDFQV 206

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL P TH + +    + R++          + QG +LS +    K F   L+N
Sbjct: 207 EDAFSGMELVPNTHRLAIMNEYLHRMDG--------RLDQGDSLSANGKWMKGFDVVLTN 258

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K            K GE         + S+  + FL  + N L+   +G  RAA+
Sbjct: 259 PPFGTK------------KGGERATRDDLTYETSNKQLNFLQIIYNSLK--SDGKARAAV 304

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+  + LF    G    +IR+ LL    +  I+ LPT +F+   + T +   +  +++  
Sbjct: 305 VVPDNVLFADGVGE---KIRQDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGESD-- 359

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +   +     D+   +R+ GK+  +              +++   F ++        R+ 
Sbjct: 360 KDNTKETWIYDMRHQMRSFGKRNPL-------------NNKDFEDFEKLFCVDDRAQRKE 406

Query: 479 KVLRPLR-----MSFILDKT-GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +          F +D+         DI+W      H    L+  + + +        
Sbjct: 407 TWDKEKNPNGRWRKFTIDEILKRPNTSLDISWMNDEEEHDDRSLN--EILSEMNEKSKAI 464

Query: 533 ESFVKESIKSNEA 545
              + E  K+ E 
Sbjct: 465 SDAIAELNKALEG 477


>gi|300718521|ref|YP_003743324.1| type I restriction enzyme EcoEI M protein [Erwinia billingiae
           Eb661]
 gi|299064357|emb|CAX61477.1| Type I restriction enzyme EcoEI M protein [Erwinia billingiae
           Eb661]
          Length = 490

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 156/401 (38%), Gaps = 57/401 (14%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L+S IA    N +       FS     ++   LL ++    + I+    +   
Sbjct: 83  NDDLFPTLKSMIAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSSER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   +  +  A +F TPR V       +           P +  ++ DP
Sbjct: 142 HLFGDIYEQILRDLQNAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  + +HV +     +           G E +   H +C   ML+  +E    
Sbjct: 190 ACGTGGFLACSFDHVKEHYVKTTEDHKTLQKQIFGVEKKQLPHLLCTTNMLLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+  +TL+K L +  ++    ++NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIRHDNTLNKPLSSWDEQVDVFVTNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLIIEVL----ADKGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIIN 445
            IV LP  +F   T I T +   +  +        + +   +      ++N  K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPDGVKNYSKTKPMKF 398

Query: 446 DDQRRQI------LDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           ++ + +I       D + SRE    +  +       R   +
Sbjct: 399 EEFQAEIDWWGSEADGFASREENNQAWKVSIDDIIARNFNL 439


>gi|89076110|ref|ZP_01162469.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp.
           SKA34]
 gi|89048186|gb|EAR53769.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp.
           SKA34]
          Length = 497

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 181/478 (37%), Gaps = 72/478 (15%)

Query: 38  FTLLRRLECAL-------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +          +  +S + E+YL +     D E     A   F N   +    
Sbjct: 33  LLFLKVFDAQEEELELELDDYKSPIPEQYL-WRNWAQDGEGITGEALLEFVNDDLFY--- 88

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                    L++  A    N +       FS     ++   LL ++    + I+   D+ 
Sbjct: 89  --------KLKNLTAPVDLNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSS 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE +++   S  +    +F TPR V       L           P +   + 
Sbjct: 140 ERHLFGDIYEQILKDLQSAGNS--GEFYTPRAVTRFIINRL----------DPKLGEAIM 187

Query: 211 DPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           DP  GTGGFL  + +HV D      + H+       HG E +   H +C+  M++  +E 
Sbjct: 188 DPATGTGGFLACSFDHVKDNYVKTAADHQTLQK-QIHGVEKKQLPHLLCITNMMLHGIE- 245

Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +   I+ G+TL+K L +     +   +NPPFG     ++D +EK           
Sbjct: 246 -----VPVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNF--------- 288

Query: 326 PGLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   +  + + LFL  +   L+       GGRA +VL    LF       +++I++ L E
Sbjct: 289 PAEMQTRETADLFLQLIIEVLDEGSETQNGGRAGVVLPDGTLF---GEGVKTKIKKMLTE 345

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKR 441
              +  IV LP  +F   T I T +   +  K  +       +   +  +        K 
Sbjct: 346 ECNLHTIVRLPNGVFNPYTGIKTNILFFTKGKPTKD------VWFYEHPYPEGVKNYSKT 399

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + +  ++ +Q +D + + E+G  SR+         ++ +   +  +F LD     + E
Sbjct: 400 KPMKFEEFQQEIDWWGNEEDGFASRV---ENNHAWKVPIADIIERNFNLDIKNPYQGE 454


>gi|293369116|ref|ZP_06615710.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
 gi|292635699|gb|EFF54197.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
          Length = 384

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 154/444 (34%), Gaps = 69/444 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   +W  A  L G      F   I   T L  L+   E  +    E  +
Sbjct: 1   MAKSNSNEQGLTKKVWTLATTLAGQGIG--FTDYITQLTYLLFLKMDDENVKLLDEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G      E+ +++ G       E +L  L              S  DN         +
Sbjct: 59  PEGYRW---ENLIELDGLDLIGQYENTLRIL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+    +  +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMINEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++     +            P +  T+ DP CGTGGFL  A +++            L
Sbjct: 156 RSLISAMVDVT----------RPQIGETVCDPACGTGGFLLAAYDYMKKQSQDKGKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +              +  L+
Sbjct: 206 RNKALHGSDNTPLVVTLASMNLYLHGVGTDRSPIICQDSLE-------KEPDILVNVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPSGSVDINRSDF-----------YVETKNNQLNFLQHIMLSLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IR+ LL    +  I+ LPT +F+   +   +   +      
Sbjct: 304 VVLPDNVLFEGGAGEV---IRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFTKG---- 356

Query: 418 RRGKVQLINATDLWTSIRNEGKKR 441
              + + I   D  T +++     
Sbjct: 357 --SRTKDIWFYDYRTDVKHTLATN 378


>gi|237721637|ref|ZP_04552118.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4]
 gi|229449433|gb|EEO55224.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4]
          Length = 476

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 100/547 (18%), Positives = 184/547 (33%), Gaps = 78/547 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   +W  A  L G      F   I   T L  L+   E  +    E  +
Sbjct: 1   MAKSNSNEQGLTKKVWTLATTLAGQGIG--FTDYITQLTYLLFLKMDDENVKLLDEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G      E+ +++ G       E +L  L              S  DN         +
Sbjct: 59  PEGYRW---ENLIELDGLDLIGQYENTLKIL--------------SEQDNLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+    +  +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVITMINEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++     +            P +  T+ DP CGTGGFL  A +++            L
Sbjct: 156 RSLISAMVDVT----------RPQIGETVCDPACGTGGFLLAAYDYMKKQSQDKGKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +              +  L+
Sbjct: 206 RNKALHGSDNTPLVVTLASMNLYLHGVGTDRSPIICQDSLE-------KEPDILVNVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPSGSVDINRSDF-----------YVETKNNQLNFLQHIMLSLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IR+ LL    +  I+ LPT +F+   +   +   +     +
Sbjct: 304 VVLPDNVLFEGGAGEV---IRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFTKGSGTK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                  I   D  T +++       +        +  Y + +    +R+  Y       
Sbjct: 361 D------IWFYDYRTDVKHTLAT-NPMQRHHLDDFVSCYHTEDIN--ARVETYNAEDNPN 411

Query: 478 IKVLRPL-RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            +  +         DKT L     D++W K       + L  L  ++++           
Sbjct: 412 GRWRKYTCDEIITRDKTSL-----DVSWIKQGGDEVDYSLSELIDILKEKSDNISKAVAE 466

Query: 537 KESIKSN 543
            + + +N
Sbjct: 467 LQKLMAN 473


>gi|291547735|emb|CBL20843.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 544

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/525 (14%), Positives = 176/525 (33%), Gaps = 56/525 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + L          V           +      +      +++   
Sbjct: 30  DGNEYK-IITQVFLYKFLNDKFGYEVKKVSPVLKNAEKWELAYAEMSEDDRLDIFDSLPS 88

Query: 87  SLSTLGSTNTRNNLES-----YIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKI-- 136
            +  L   +   NL +           D+      D +   FS+  A+  K  L  K+  
Sbjct: 89  DIPLLNPEHLIANLWNQQAKGDFDLIFDSTMTDIADKNIDIFSTQTAQNTKIPLFEKLTQ 148

Query: 137 ---------------CKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                                              ++I+E+LI+ + +       ++ TP
Sbjct: 149 YVTDDTARAPFARALVDKLVNFSFEEAFEKHYDFFADIFEYLIKDYNTAGGGKYAEYYTP 208

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  +   LL+     L           YDP+ GTG  L    + + +           
Sbjct: 209 HAIATIMARLLVGNATDLHSIE------CYDPSAGTGTLLMALAHKIGE--------DKC 254

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNP 299
               Q++   ++ +    +++  L S     +  +        S +    + F Y +SNP
Sbjct: 255 TIFAQDISQRSNKMLKLNLILNSLVSSLDHAIQGDTLIAPYHKSDNGQELRTFDYVVSNP 314

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   +   ++ +          RF  G+PK       SM         +       G+ 
Sbjct: 315 PFKMDFSDTRERIAAMPV-----RFWAGVPKVPAKKKESMAIYTLFIQHVLNSLKSTGKG 369

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +   F       E +I + +++  ++   +++P+++F  T     +    N +  
Sbjct: 370 AIVVPTG--FVTAKSGVEKKILQHIVDEHIVYGCISMPSNVFANTGTNVSVLFFDNSR-- 425

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
            +  KV LI+A+ L    ++   ++R + D +  +I+D ++++E    FS  + Y     
Sbjct: 426 -KTDKVVLIDASKLGEEYKDGNNQKRRLRDFEIDKIVDTFLNKEAVDDFSVAVTYDEIKE 484

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           ++  +         ++   L++ E +      +   Q ++ +  K
Sbjct: 485 KKYSLAAGQYFDVKIEYVELSQDEFNARMSAYAEKLQEYFAEGDK 529


>gi|75674467|ref|YP_316888.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
 gi|74419337|gb|ABA03536.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
          Length = 519

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/533 (18%), Positives = 180/533 (33%), Gaps = 77/533 (14%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRSAV 55
            ++  L + +    + +       GD          LP       L+ L+  LE  R   
Sbjct: 16  TTSQMLGSLLKSARDIMRKDKGLNGDLDR-------LPLLTWIMFLKFLDD-LEQQREEE 67

Query: 56  -----------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESY 103
                       E    +     D +        SF N  E   +           L + 
Sbjct: 68  TALSGKKFKAAIEAPYRWRDWAADPQGITGDELLSFINAEEAVRADGKKGPGLFAYLRAL 127

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
            +S  DN + +     F     R++   LL  I     GI           +  +YE ++
Sbjct: 128 SSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIINKVGGIHFTSSD-ELHTLGALYESML 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R       +   +F TPR VV     +            P +  T+ DP  GTGGFL + 
Sbjct: 186 REMRDAAGDS-GEFYTPRAVVRFMVEVT----------DPRLGETVLDPASGTGGFLVET 234

Query: 224 MNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            NH+          K        G E +   + +C   +L+  L++      +       
Sbjct: 235 YNHLEKQVKTVADRKRLQDETITGCEPKSLPYLLCQMNLLLHGLDAPQIDPGNALR---- 290

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               ++   +R    L+NPPFG            E + G  G F P   + ++ ++LFL 
Sbjct: 291 FKLSEIGEKERVDVILTNPPFGG-----------EEEKGIQGNF-PEDRQTAETALLFLQ 338

Query: 341 HLANKLELPPNGGGR---AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
            +  KL+  P   GR   AA+V+ +  LF        + I+  LL++  +  IV LP  +
Sbjct: 339 LIMRKLKRQPTSVGRPARAAVVVPNGTLF---GDGVCARIKEELLKDFNLHTIVRLPNGV 395

Query: 398 FF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDI 455
           F   T+I T +         +R  + + +   +      R    K + +  ++ +  +  
Sbjct: 396 FAPYTSIPTNILFF------DRSCQTKEVWYYEQPLPDGRKNYTKTQPMQFEEFKGCMAW 449

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRP-LRMSFILDKTGLARLEADITWRKL 507
           +  RE    +  +  +        + R   R     +     +L  DI  ++L
Sbjct: 450 WTKREENDQAWRVSAKELRDANCNLDRKNPRSKVDFEHLPPDQLAEDILKKEL 502


>gi|15828553|ref|NP_325913.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089495|emb|CAC13255.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma
           pulmonis]
          Length = 332

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 152/366 (41%), Gaps = 43/366 (11%)

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L  A+L          +P    ++YDP CGTGG    A  ++            L  +
Sbjct: 2   VELMVAIL----------NPESDSSIYDPCCGTGGMFIQAKQYLQKNNL---PTDELKIY 48

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE + +T  +    +++   + D   D    ++   T + DL   K+F   L+NPPF  
Sbjct: 49  GQEFQNQTWKLARINLILNGFDPD---DTHLGLRSEDTFNDDLTGNKKFDIVLANPPFNV 105

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K  +  D            RF  G+P   +G+  ++ H+  KL    N  GRAAIVL++ 
Sbjct: 106 KKWQTNDISGD-------PRFAWGMPPEGNGNYAWISHIVYKL----NRKGRAAIVLANG 154

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            + + +    E  IR+ +LE + IEAI++LP  LF+ T IA  +WI +N+K  +      
Sbjct: 155 SVSSSQ--KNELAIRKKMLEENKIEAIISLPDKLFYTTGIAATIWIFNNQKEND---DFL 209

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYRTFGYRR 477
           LINA +L      E KK R +      +I+D+Y     GK       +R +         
Sbjct: 210 LINAEELGEL---ESKKLRHLTKSNIEKIVDVYKQFREGKKINEKDLARSVSLDEIKEND 266

Query: 478 IKVL--RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             ++  R +  S           E      +L+ L + F   I +          +++  
Sbjct: 267 YSLVPGRYIEYSNEDIDKEEIIKEILEIEAELNSLFKDFSDLISQVQEAIKKSIEYSQKT 326

Query: 536 VKESIK 541
            ++  K
Sbjct: 327 DEDEEK 332


>gi|161507779|ref|YP_001577743.1| Type I restriction modification system [Lactobacillus helveticus
           DPC 4571]
 gi|160348768|gb|ABX27442.1| Type I restriction modification system [Lactobacillus helveticus
           DPC 4571]
          Length = 484

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 186/550 (33%), Gaps = 85/550 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     +   I        L+  +   E     + EKY    
Sbjct: 2   TNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKMSKEQDEEKD--IPEKYRWDN 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             N +                 Y    L   N        I +   NA    +       
Sbjct: 58  LVNKEGLELKNF----------YRQLLLDLGNPEVVKSERINAIYANASTAID------- 100

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                +   L KI K+ + ++    +  +  + ++YE L+ +  +EV  GA  + TPR +
Sbjct: 101 -----EPANLEKIIKDINDLDWW--SAREEGLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           +++   +            P +     DP  GT GF+  A  ++ D    +         
Sbjct: 154 INMMVKMT----------KPKIGDRCNDPAAGTFGFMVAADQYLKDKTDDYSELSEEKYD 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P TH + +    +  ++          ++QG +LS +    K F   
Sbjct: 204 FQVKEAFSGMELVPNTHRLAIMNEYLHGMDG--------RLEQGDSLSANGKWMKNFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K GE         + S+  + FL  + N L+   +G  R
Sbjct: 256 LTNPPFGTK------------KGGERVTRDDLTYETSNKQLNFLQIIYNSLKR--DGKAR 301

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF    G    EIR+ LL    +  I+ LPT +F+   + T +   +    
Sbjct: 302 AAVVVPDNVLFADGVGE---EIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRG-- 356

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           EE +   +     D+   +R+ G KR  +ND    +   ++   +  K     D      
Sbjct: 357 EEDKDNTKETWIYDMRHQMRSFG-KRNPLNDKDFVEFEKLFCVDDRSKRKETWDKEKNPN 415

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            R       R   I +         DI+W      H++    + + +             
Sbjct: 416 GRW------RKFTIDEIKKRPNTSLDISWMSDEEEHETK--SLKEILSDMNEKSKAISEA 467

Query: 536 VKESIKSNEA 545
           + E  K+ E 
Sbjct: 468 IAELNKALEG 477


>gi|238918025|ref|YP_002931539.1| type I restriction-modification system, M subunit [Edwardsiella
           ictaluri 93-146]
 gi|238867593|gb|ACR67304.1| type I restriction-modification system, M subunit [Edwardsiella
           ictaluri 93-146]
          Length = 495

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 174/466 (37%), Gaps = 70/466 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +          +E+ L F   N       +    ++   SE            
Sbjct: 34  LLFLKVFDA---------QEEELEFEQDNYRCPIPERFLWRNWAADSEGLTGDALLDFVN 84

Query: 98  NNLESYI----ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N+L   +    A+   N +       FS     ++   LL ++    + I+   D+    
Sbjct: 85  NDLFDSLKNQPANIDLNPRGYVVKEAFSDAFNYMKNGTLLKQVINKLNEIDFT-DSSERH 143

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE ++R   S  +  A +F TPR V       +           P +   + DP 
Sbjct: 144 LFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGERVMDPA 191

Query: 214 CGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL  A +HV +      + H+     +  G E +   H +C   ML+  +E    
Sbjct: 192 CGTGGFLACAFDHVKEHYVETAADHQTLQQQIL-GVEKKQLPHLLCTTNMLLHGIE---- 246

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+ G+TL K L +        L+NPPFG     ++D +E+           P  
Sbjct: 247 --VPVQIRHGNTLDKPLSSWDSDIDVILTNPPFGG---TEEDGIEQNF---------PAD 292

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L+     GGRAA+VL    LF       +++I++ L     + 
Sbjct: 293 LRTRETADLFLQLIIEALK----KGGRAAVVLPDGTLF---GEGVKTKIKQLLTSECNLH 345

Query: 389 AIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIIN 445
            IV LP  +F   T I T +   +  +        Q +          +++  K + +  
Sbjct: 346 TIVRLPNGVFAPYTGIKTNILFFTKGQP------TQDVWFYQHPYPAGVKSYSKTKPMKF 399

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           ++   +I   +   E   F+  ++       ++ +   +  +F LD
Sbjct: 400 EEFEAEI--AWWGDEADGFAARVENEQ--AWKVSIETIIERNFNLD 441


>gi|114048354|ref|YP_738904.1| N-6 DNA methylase [Shewanella sp. MR-7]
 gi|113889796|gb|ABI43847.1| N-6 DNA methylase [Shewanella sp. MR-7]
          Length = 500

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 167/451 (37%), Gaps = 68/451 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---------------NLESYIASFSD 109
              + E   +   Y     SEY                           +L++  A    
Sbjct: 40  DAQEQELEFEQDDYRSPIPSEYLWRHWAEDKEGITGDELLEFVNNALFVDLKNLTAPKDT 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +       FS     ++   LL ++    + ++   D+    +  +IYE ++R   S 
Sbjct: 100 NPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEVDFT-DSSERHLFGDIYEQILRDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A +F TPR V       +          +P +   + DP CGTGGFL  A+ H+  
Sbjct: 159 GN--AGEFYTPRAVTKFMVNRI----------NPQLGEKVLDPACGTGGFLACAVEHLKA 206

Query: 230 CGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
             S            HG E +   H +C   ML+  +E      +   I+ G+TLS+ L 
Sbjct: 207 QVSTAAQHQQLQQQIHGVEKKQLPHLLCTTNMLLHGIE------VPVQIKHGNTLSQPLS 260

Query: 288 T-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           +        ++NPPFG     ++D +EK           P   +  + + LFL  +   L
Sbjct: 261 SWDNDVDVIITNPPFGG---TEEDGIEKNF---------PADMQTRETADLFLQLIIEVL 308

Query: 347 E---LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTN 402
           +        GGRAA+VL    LF       +++I++ L E   +  IV LP  +F   T 
Sbjct: 309 KDGSASNGKGGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIVRLPNGVFAPYTG 365

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIINDDQRRQILDIYVSRE 460
           I T +   +  +  +       +   +      ++N  K + +  ++   +I   +   E
Sbjct: 366 IKTNILFFTKGQPTKD------VWFYEHPYPDGVKNYSKTKPMKFEEFEAEI--AWWGYE 417

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
              F+  ++       ++ +   +  +F LD
Sbjct: 418 ADGFASRVENEH--AWKVSIDEIVARNFNLD 446


>gi|322517065|ref|ZP_08069950.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124325|gb|EFX95833.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
          Length = 534

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 195/521 (37%), Gaps = 66/521 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESF------- 72
           +  ++  +   F   + L          V  +        ++    +  LE         
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAQNVDSENTYEYLVSMSEEDYDWLLEDIGTSTAWM 86

Query: 73  ----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      K     FY T E +L+ +   N  N++ S         +   E     +
Sbjct: 87  KPNQFIETLHRKQNESDFYETFENTLNQIAIDN--NDIFSVHTEGDTTVRLFDERLITDN 144

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                ++  +   I    + ++ + D         S ++E++I+ +  +      ++ TP
Sbjct: 145 ISDSSKRNEVAKAIINLLAKVKFNQDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTP 204

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +   +L+  D             +YDP+ G+G  L +  + +             
Sbjct: 205 HSVAKIIAEILVGNDKPQNV-------RIYDPSAGSGTLLMNLASRIG--------VDKA 249

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + Q++  ++  +         L  +  +    NI +G+T+ ++    ++  Y +SNPP
Sbjct: 250 TVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVEGNTILRNRHP-EKMDYIVSNPP 303

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAA 357
           F   + K +D VE   +  E  RF  G+PK    S   M         +       G+AA
Sbjct: 304 FKLDFSKWRDQVETLPEASE--RFFAGVPKTLPKSKDKMAIYELFIQHIIYSLKPDGQAA 361

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL +   F       + +IR+ L++N ++  +V++P+++F  T     +  +  +    
Sbjct: 362 VVLPTG--FITAQNGIDKKIRQHLVDNQMMAGVVSMPSNIFATTGTKVSILFIDKK---- 415

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476
            +G V LI+A++L T I+    ++ +++ ++ ++I++ ++ +E    FS  + Y     +
Sbjct: 416 NKGDVVLIDASNLGTKIKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYEDIKEK 475

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQS 513
              +         +D   +   E +        KLS L Q 
Sbjct: 476 NYSLSAGQYFDIKIDYVDITAEEFEAKMAAFQSKLSDLFQQ 516


>gi|189463332|ref|ZP_03012117.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136]
 gi|189429951|gb|EDU98935.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136]
          Length = 477

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/461 (19%), Positives = 161/461 (34%), Gaps = 70/461 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +  SL   +W  A  L G      F   I   T L  L+   E       E  +
Sbjct: 1   MATNNATEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLLLKMDAENVEMFGEESAI 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             G   +D    + + G       E +L  L              S  +N         +
Sbjct: 59  PTGYQWMD---LISLDGLDLVKQYEDTLKQL--------------SEQENLIGTI----Y 97

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++K   L K+       +     +   V   IYE ++ + G +   GA  + TP
Sbjct: 98  TKAQNKIDKPVYLKKVISMIDEEQWLI--MDGDVKGAIYESILEKNGQDKKSGAGQYFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +          +P M  T+ DP CGTGGFL  A +++ D  ++ +    L
Sbjct: 156 RPLIKAMVDCI----------APQMGETVCDPACGTGGFLLTAYDYMKDQSANKEKRDFL 205

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG +  P    +    + +  + +D    + ++  +                 L+
Sbjct: 206 RNKALHGVDNTPLVVTLASMNLYLHGVGTDRSPIVCEDSLE-------KEPSTLVDVILA 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     D    +              +  +  + FL H+   L+     GGRAA
Sbjct: 259 NPPFGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHMMLMLKT----GGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   +  +   
Sbjct: 304 VVLPDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFTKGQP-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
                + +   D  T +++     + +        +  Y S
Sbjct: 359 ----TKEVWFYDYRTDVKHTLATNK-LERHHLDDFISCYNS 394


>gi|237721953|ref|ZP_04552434.1| type I restriction-modification system [Bacteroides sp. 2_2_4]
 gi|229448822|gb|EEO54613.1| type I restriction-modification system [Bacteroides sp. 2_2_4]
          Length = 490

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 154/447 (34%), Gaps = 52/447 (11%)

Query: 21  DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80
            L G          +L    L+      +   S            N      +     SF
Sbjct: 15  ILGGTISADQCRDYVLALLFLKSASEYYKSNNSF-------QQDDNSPALRLLVSERSSF 67

Query: 81  YNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDFSSTIARLEKAG--LLYKI 136
               +   S          L     + +       I +  DF S I     A    L ++
Sbjct: 68  DYLCKELDSPELGRLINMALYELEQVNALVTEGYEINKAIDFESNILGDMNARSIKLREL 127

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              F  I L   T     + ++Y  L+  F  E  +   + +TP +VV L T L+     
Sbjct: 128 LLLFQEIRLTNATGQLIDVGDLYNQLLYIFAEEAGKKINNVLTPTEVVSLITKLI----- 182

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
               +       L DP  G+G  L +    +   G+          +GQE+    +A+  
Sbjct: 183 ----DGDRKNACLCDPASGSGTLLVEVGKKMGIRGTE--------LYGQEVNWNLYALTK 230

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +++   +              +    D    ++F   +S PPF  KW  +      E 
Sbjct: 231 MNLMLNGFKGATFL---WGDSLSNPKLLDHGGLRKFDIVVSVPPFADKWAAE------EA 281

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +    RF  G+P  S  +  ++ H+   L       G+A +V+    LF       ES+
Sbjct: 282 YSDFYKRFKYGIPPKSQVTWAYISHILASLR----NDGQAVVVVPVGVLFRNT----ESK 333

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  ++E++L+EA++ LP +LF+   I+T + +      E  R +   ++A   +     
Sbjct: 334 IREQIIEHNLLEAVIELPPNLFYGAAISTAILVFRK---ERMRTQTLFVDARKGYI---- 386

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGK 463
             K    ++D    Q+ + Y     G+
Sbjct: 387 SNKGLCKLSDKMLEQLSNTYKKFLAGE 413


>gi|153824557|ref|ZP_01977224.1| type I restriction-modification system, M subunit [Vibrio cholerae
           MZO-2]
 gi|149741775|gb|EDM55804.1| type I restriction-modification system, M subunit [Vibrio cholerae
           MZO-2]
          Length = 496

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/414 (21%), Positives = 164/414 (39%), Gaps = 55/414 (13%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+   D+   
Sbjct: 83  NDDLFPKLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       L           P +   + DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDP 189

Query: 213 TCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFL  A +HV +      + H+       HG E +   H +C+  M++  +E   
Sbjct: 190 ACGTGGFLACAFDHVKENYVTSAADHQTLQK-QIHGVEKKQLPHLLCITNMMLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+ G+TL+K L       +   +NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L    +  GRA +VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----DKNGRAGVVLPDGTLF---GEGVKTKIKKMLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T +   +  +        + +   +  +        K   + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPEGVKNYSKTNPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
            ++ +Q +D + +  +G  SR+    T    ++ +   +  +F LD     + E
Sbjct: 398 FEEFQQEIDWWGNEADGFASRI---ETKQAWKVSIEDIIERNFNLDIKNPYQGE 448


>gi|306825748|ref|ZP_07459087.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432109|gb|EFM35086.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 534

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 197/522 (37%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLAFGGSNIDLESF------- 72
           +  ++  +   F   + L          + E         +     +  LE         
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYQAKVLDESNTYENLLAMNEEDYDWLLEDIGTSTAWL 86

Query: 73  ----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      +    +FY T E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KSDQLIETLHRQQNEPTFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEK-AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI+   K   +   I    + ++   D         S ++E++I+ +  +      ++ T
Sbjct: 144 TISDSSKRNEVAKAIINLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGHDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVEILPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E D        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFDAKMTAFQNKLSDLFQQ 516


>gi|163748971|ref|ZP_02156222.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella
           benthica KT99]
 gi|161331347|gb|EDQ02235.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella
           benthica KT99]
          Length = 495

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 167/449 (37%), Gaps = 75/449 (16%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---------------NLESYIASFSD 109
              + E   + + Y      ++      + N                   L++  A    
Sbjct: 40  DAQEEELEFEQSDYQSPLPEQFLWRNWAADNQGITGEELLYFVNNKLFVELKNLYAPLDI 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +        S     ++   LL ++    + I+   ++    +  ++YE +++   S 
Sbjct: 100 NPRGFVVKEALSDAFNYMKNGTLLRQVINKLNDIDFT-NSEERHLFGDLYEQILKDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A +F TPR +       +           P +  ++ DP CGTGGFL  + +HV +
Sbjct: 159 GN--AGEFYTPRAITRFIVDRI----------DPKLGESILDPACGTGGFLACSFDHVKN 206

Query: 230 CGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
               +    +       HG E +   H +C   ML+  +E      +   I+ G+TLSK 
Sbjct: 207 NYIKNNTTDLPILQRQIHGVEKKQLPHLLCTTNMLLHGIE------VPTQIKHGNTLSKP 260

Query: 286 LFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           L +    +   ++NPPFG     ++D +EK           P   +  + + LFL  +  
Sbjct: 261 LSSWDDEYDIIVTNPPFGG---TEEDGIEKNF---------PTEYRTRETADLFLQLIIE 308

Query: 345 KLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RT 401
            L+ P  G  GGRAA+VL    LF       +++I++ L E   +  IV LP  +F   T
Sbjct: 309 VLKEPSAGKEGGRAAVVLPDGTLF---GEGVKTKIKKLLTEECNLHTIVRLPNGVFAPYT 365

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL----WTSIRNEGKKRRIINDDQRRQI----- 452
           +I T +   +  K   +      +   +          N+ K  +    + + +I     
Sbjct: 366 SIKTNILFFTKGKPTTK------VWFYEHPYPAGVKSYNKTKPMKF--AEFQTEIDWWGT 417

Query: 453 -LDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             D + SR+  + +  +       R   +
Sbjct: 418 EADGFASRKTTEQAWQVSIDDIIARNFNL 446


>gi|167837438|ref|ZP_02464321.1| type I restriction modification system, methyltransferase subunit
           [Burkholderia thailandensis MSMB43]
          Length = 494

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 181/541 (33%), Gaps = 77/541 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVRE 57
           M+  T S   + N  W  A  L  D     +      I     L+      +   S    
Sbjct: 1   MSNATQS---IVNKAWSFAHVLRDDGLS--YMAYTEQITFLLFLKMAHELTQSPYSR--- 52

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +D ES V   G        + L  LG           +      A+   ++
Sbjct: 53  --PPIVPKGMDWESLVAKDGDELEVHYRHVLDELGRQ------PGMLGEIFKKARPDIQN 104

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                       A L   I     G      ++   V  +IYE L+ +  +E  +GA  +
Sbjct: 105 -----------PATLKKLIVDLIGGENWM--SLQADVKGDIYEGLLSKSAAESPKGAGQY 151

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----- 232
            TPR+++      +           P    T+ DP CGTGGFL  A+++V          
Sbjct: 152 FTPRELIKAIVDAM----------QPAPSDTVCDPACGTGGFLMQAIDYVNRHYGADLDP 201

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K        G EL P T  + +  + +  ++S      S      S         +R
Sbjct: 202 DQKKHLRNGFVQGGELVPATARLAIMNLYLHGVQSQDCPIRSGVDSLAS------QPSER 255

Query: 292 FHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   L+NPPFGKK      +   +  K  +            +  + F+ H+ + L++  
Sbjct: 256 FSMVLTNPPFGKKSSISVVNEEGELEKEEQAYERTDFWTTTKNKQLNFVQHIKSLLKI-- 313

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRAA+VL  + LF G AG     IR+ LL+   +  ++ LPT +F+   +   +   
Sbjct: 314 --HGRAAVVLPDNVLFEGGAGE---TIRKNLLQQFDVHTLLRLPTGIFYAQGVKANVLFF 368

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              K  +     + +   DL T++     K   +      + ++ + +          + 
Sbjct: 369 D-AKPAQEAPWTKGLWVYDLRTNMH-FTLKTNPLKRANLDEFVECFNA----------EN 416

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWLDILKPMMQQIY 527
           R          +P       D   L + +    DI W K   L  S  L     + Q+I 
Sbjct: 417 RHERKATWGEAQPDGRWRYFDYDELVKRDKTNLDIFWLKDEDLEDSENLPEPAVLAQEIA 476

Query: 528 P 528
            
Sbjct: 477 D 477


>gi|329955592|ref|ZP_08296500.1| putative type I restriction-modification system, M subunit
           [Bacteroides clarus YIT 12056]
 gi|328525995|gb|EGF53019.1| putative type I restriction-modification system, M subunit
           [Bacteroides clarus YIT 12056]
          Length = 560

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 79/531 (14%), Positives = 183/531 (34%), Gaps = 65/531 (12%)

Query: 28  HTDFGKVILPFTLLRRLECAL--EPTRSAVR-EKYLAFGGSNIDLESFVKVAGYSFYNTS 84
            +++  ++    L +        E  R  +  E+       + + ++F +      ++  
Sbjct: 30  GSEYK-IVTEMFLYKFFNDKFGYEAKRDPMYGERLSKAEKWDAEYDTFTEEEVEDLFSYL 88

Query: 85  EYSLSTLGSTNTRNNLESYI--ASFSDNAKAIFEDF------------------------ 118
            +S+  L   +T ++L +      FS    A   D                         
Sbjct: 89  PHSVPRLKPEHTLSHLYNSATKGDFSTLLDATLVDIASLNAETFSVTTSGKSKVNIFFPL 148

Query: 119 --DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
               + T  R E A  L +   +F+  ++  +       S I+EHL++ F +       +
Sbjct: 149 TTYVTDTQKRDEFAKSLMRNVASFNFEDVFDEKY--DFFSRIFEHLLKGFNNAGGGKYAE 206

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR +  +   LL+  +  L         T YDP+ GTG  L    + + +       
Sbjct: 207 YYTPRAIAQVMARLLVGENTDLR------GVTCYDPSAGTGTLLMALAHQIGE------- 253

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   Q++  ++  +    +++    +     +  N     +  +     ++F + +
Sbjct: 254 -ERCTIFSQDISEKSSEMLRLNLILNNFAASLPNVVQGNTLTEPSHKESNGVLRKFDFIV 312

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG------SMLFLMHLANKLELPP 350
           SNPPF   + + +D +  +       RF  G+P            M         +    
Sbjct: 313 SNPPFKLDFPEYRDTLASDTI-----RFWAGVPNAVKKVDPMKPKMAIYTCFIQHVLNSL 367

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AAIV+ +  +        E  I + +++   +  ++++P+++F  T     +   
Sbjct: 368 KTTGKAAIVIPTGFITAKS--GVEKRILQRIVDERWVYGVISMPSNVFATTGTNVSVIFF 425

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
                 +   KV LI+A+ L    +    ++R + D +  QI++ + ++E    FS  + 
Sbjct: 426 DKSANHD---KVILIDASKLGEEYKEGNNQKRRLRDFEIDQIVNTFQNKEAVDDFSVAVT 482

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           Y     +   +         +D   +   E      +        + +  +
Sbjct: 483 YDEIKEKGYSLSAGQYFDIKIDYVDITEEEFYARMEEYKRTLAKQFAESRR 533


>gi|240169988|ref|ZP_04748647.1| N-6 DNA methylase [Mycobacterium kansasii ATCC 12478]
          Length = 497

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 99/534 (18%), Positives = 182/534 (34%), Gaps = 86/534 (16%)

Query: 11  LANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPT---RSAVREKYLAFGGSN 66
           L + +W     L  D     ++ + +     L+            +  V ++Y      +
Sbjct: 7   LVDKLWAYCNVLRDDGVGVIEYTEQLTYLLFLKMAHERATRKLNPQQIVPDEYSWQKLLD 66

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +                +Y+   +G       L +                 F     R
Sbjct: 67  AEGTDLE----------VQYTKILVGLAQQPGTLGTI----------------FRKAQNR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++    L ++  +    E +       +  + YE L+ +  S+   GA  + TPRD++  
Sbjct: 101 IQDPAKLKRLIVDLIDKE-NWSASGTDLKGDAYEALLSKGASDKGSGAGQYFTPRDLIRA 159

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILV 241
              ++           P     + DP CGTGGFL  A  H      +      K      
Sbjct: 160 IVDVI----------DPTPADEVVDPACGTGGFLLVAHEHAVQGAENLTPTKRKHLRDDF 209

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL   T  +    +L+  + +    D    I+    L  D   G+R+   L+NPPF
Sbjct: 210 VTGYELVDATARLAAMNLLLHGIGT---ADGDSLIEVRDALISD--PGRRWSVVLTNPPF 264

Query: 302 GKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G+K        + +E +          +   S+  + FL H+   L++     GRAA+VL
Sbjct: 265 GRKSSLTMVGADGREVREDVEIERQDFVVTTSNKQLNFLQHIMTILDI----NGRAAVVL 320

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             + LF G AG     +RR LL +  +  I+ LPT +F+   +   +     +   E+  
Sbjct: 321 PDNVLFEGGAGE---TLRRKLLADFDLHTILRLPTGIFYAQGVKANVLFFDRKPASEQPW 377

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFSRMLDYRTFG 474
             +L    DL T+      K+  +      + +D Y+       R   +  +   Y+   
Sbjct: 378 TTKL-WVYDLRTNQH-FTLKQNPLRRHHLDEFVDFYLSGKPRDERVESERWKSFTYKELI 435

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            R                    ++  DITW +   L  +  L   + + ++I  
Sbjct: 436 ARD-------------------KVNLDITWLRDESLDDADHLPAPEVIAREIVE 470


>gi|316932986|ref|YP_004107968.1| adenine-specific DNA-methyltransferase [Rhodopseudomonas palustris
           DX-1]
 gi|315600700|gb|ADU43235.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris DX-1]
          Length = 484

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 168/475 (35%), Gaps = 70/475 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +  SL   +W  A  L         +   I     L+  E  +     A           
Sbjct: 2   NPQSLVAKVWNFAHVLRDQGVSYQAYISQISYLLFLKMDEERVAQIGEASM--------- 52

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                      G  + +  E S   LG+T         +   S     I     F     
Sbjct: 53  --------LPDGARWADIKELSGEALGAT-----YGKLLEKLSKQP-GIIGAI-FLKAQN 97

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            ++    L ++     G       +P  V  +IYE L+ R   +V  GA  + TPR V+ 
Sbjct: 98  EIQDPAKLKRLVGLIDGETWL--ALPVDVKGSIYEGLLARNAEDVKSGAGQYFTPRPVIE 155

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILV-- 241
               L+           P   +T++DP CGT GFL  A  H+         ++   L   
Sbjct: 156 AMVTLV----------DPKPHQTVHDPACGTAGFLLAAWEHMKKHPKARDRRVYSELKNK 205

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G ++ PE   +    + +  +        +K+   G+        GK F   L+NPPF
Sbjct: 206 FSGVDIVPEVVRLAAMNLYLHGITGVDSIVEAKDALLGA-------GGKSFDVVLTNPPF 258

Query: 302 GKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           GKK      +D   ++ E ++ +   F       S+  + FL H+   L       G AA
Sbjct: 259 GKKQSYRIVRDDGEIDSEREDYDRQDF---FVTTSNKQLNFLQHIMTVL----APNGEAA 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IRR LL+N     ++ LPT +F++  +   +      K   
Sbjct: 312 VVLPDNVLFEGGAGE---TIRRRLLQNFDFHTLLRLPTGIFYKQGVKANVLFFDK-KPPS 367

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR------ENGKFSR 466
                + +   DL T+ R   K+R ++  D     +  Y S       E  KF R
Sbjct: 368 ETASTKELWIYDLRTNQRFTLKERPMVRAD-LDDFVACYRSGHRAERAETEKFRR 421


>gi|307824354|ref|ZP_07654580.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacter tundripaludum SV96]
 gi|307734734|gb|EFO05585.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacter tundripaludum SV96]
          Length = 594

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 167/493 (33%), Gaps = 75/493 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D           +++     L+  +          RE        
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQLVW-MLFLKIFDD---------RESEWEILQD 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
           N       +    ++   +E            N+L   +        + +A      F  
Sbjct: 52  NYQSPLPEQYRWRNWAANAEGMTGDALKQFLDNDLFPALQQLEAKGGDQRAYVIRSVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   L+ ++                 +  ++YE L+R   S  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQSAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPI 239
           V      ++          +P +   + DP CGTGGFL+ ++ H+          +    
Sbjct: 170 VTEFMVRMV----------NPRLGEKVLDPACGTGGFLSCSIEHIRKQDVLTVDDEARLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +C   M++  +      D+  NI+  +TL++        +R    +
Sbjct: 220 ASIFGIEKKPMPHLLCTTNMILHGI------DVPSNIRHDNTLARPLISWGPKERVDVVV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGRA
Sbjct: 274 TNPPFGG---MEEDGIETNF---------PATFRTRETADLFLVLIMQMLKA----GGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   S    
Sbjct: 318 ALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSKGTP 374

Query: 416 EERRGKVQLINATDL----WTSIRNEGKKRRIINDDQRR----QILDIYVSRENGKFSRM 467
                    I   +          N+ K  +I   D       +  D +  R   +++  
Sbjct: 375 TRH------IWFYEHPYPPGVKNYNKTKPMKIAEFDAEAAWWGKETDGFKQRVENQYAWK 428

Query: 468 LDYRTFGYRRIKV 480
           +       R   +
Sbjct: 429 VGIDDIKARNYNL 441


>gi|295692968|ref|YP_003601578.1| type i restriction-modification enzyme, m subunit [Lactobacillus
           crispatus ST1]
 gi|295031074|emb|CBL50553.1| Type I restriction-modification enzyme, M subunit [Lactobacillus
           crispatus ST1]
          Length = 485

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 187/551 (33%), Gaps = 84/551 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAF- 62
               +   +W     L  D     +   I        L+  +   E      + ++    
Sbjct: 2   KNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKMSKEQGEENDIPEKYRWDNLV 59

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               ++L +F K                L   N +    S I +   +A           
Sbjct: 60  SKDGLELSNFYKQL-------------LLDLGNPQVVKSSRINAIYADASTSIH------ 100

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                 K   L KI K+  G++    +  D  + ++YE L+ +  +EV  GA  + TPR 
Sbjct: 101 ------KPASLEKIIKDIDGLDWW--SARDEGLGDLYEGLMEKNANEVKSGAGQYFTPRV 152

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------- 234
           ++++   +            P +     DP  GT GF+  A  ++ D    +        
Sbjct: 153 LINMMVRMT----------RPKLGDRCNDPAAGTFGFMVAADQYLKDKNDDYSSLSEEKG 202

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL   TH + +    +  +           ++ G +LS +    K F  
Sbjct: 203 EFQVNEAFSGMELVETTHRLALMNQYLHGMNG--------RLELGDSLSANGNWMKNFDV 254

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   D         N +         + S+  + FL  + N L+   +G  
Sbjct: 255 VLTNPPFGTKKGID---------NDKAASRDDITFETSNKQLNFLQIIYNSLKH--DGKA 303

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+V+  + LF    G     IR+ LL    +  I+ LPT +F+   + T +   +  +
Sbjct: 304 RAAVVVPDNVLFADSVGEA---IRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGE 360

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           ++  +   +     D+   +R+ G KR  +N+    +   ++   +  K     D     
Sbjct: 361 SD--KDNTKETWIYDMRHQMRSFG-KRNPLNEKDFAEFEKLFCVDDRSKRKETWDKDKNP 417

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
             R       R   I +      +  DI+W      H +    + + + +          
Sbjct: 418 NGRW------RKFTIDEILKRPNISLDISWMNDEEEHDN--RSLKEILDEMNDKSKAIRD 469

Query: 535 FVKESIKSNEA 545
            + E  K+ E 
Sbjct: 470 AIAELNKALEG 480


>gi|162453796|ref|YP_001616163.1| type I restriction-modification system M subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161164378|emb|CAN95683.1| probable type I restriction-modification system,M subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 486

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/547 (17%), Positives = 175/547 (31%), Gaps = 72/547 (13%)

Query: 9   ASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             +   +W     L  D   H D+ + I     L+                     G ++
Sbjct: 2   TDVVGKLWGFCHTLRHDGIDHGDYIEQITYLLFLKMASER----------------GIDL 45

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
                    G        +      S     +  + +    D A  +  +    S   R 
Sbjct: 46  SRVEHRTPRGEVDATDCSWPALRARSGQALLDRYADVLRSLDGAPGVLGEIYAGSQ-PRF 104

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +    L K+      IE     +   + +  YE L+ +  +E  +GA  + TPR ++   
Sbjct: 105 KSPASLGKLVDLIDEIEWT--RLGVDIQAAAYEGLLEKAAAEGKKGAGQYFTPRALIQSI 162

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------HKIPPILV 241
              +                 L DP CGTGGFL  A   +             +      
Sbjct: 163 VRCIRP------DPQGKPGFALCDPACGTGGFLVAAWEWIEAEARGALDREAARRIKAGA 216

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL      + +  + +  +E          I  G +L  D    +RF   L+NPPF
Sbjct: 217 FFGQELVARPRRLALMNLYLHGIE--------PRITLGDSL--DAPPDERFDVILTNPPF 266

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G K               E  R        ++  + F+ H+   L      GGRAA+VL 
Sbjct: 267 GTKGAY------------ETPRREDFAIATANKQLNFIQHVLTILRP----GGRAAMVLP 310

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERR 419
              LF  +AG+    +   L     +  ++ LP   F  +   +   +   +  +  ER 
Sbjct: 311 DHCLFADQAGA----VLEILARGCDLHTVLRLPHGTFTPYSAGVKANVVFFTKGRATER- 365

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR-MLDYRTFGYRRI 478
                +   D  T + +  KK R ++     +    Y    +G+ +R         +R  
Sbjct: 366 -----VWIYDARTGVPSITKKGRPLSPAHFAEFERCYGGDPDGRGAREAASSSEGRFRSF 420

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           ++       F LD     + E+     ++ P  +    D L+ + + +       + ++ 
Sbjct: 421 ELREVKEREFKLDGLRWLKEESLDEAGEM-PEPEELATDALQELTEAVAALNRVLALLEG 479

Query: 539 SIKSNEA 545
             K+ EA
Sbjct: 480 GAKAAEA 486


>gi|288560185|ref|YP_003423671.1| type I restriction-modification system M subunit HsdM
           [Methanobrevibacter ruminantium M1]
 gi|288542895|gb|ADC46779.1| type I restriction-modification system M subunit HsdM
           [Methanobrevibacter ruminantium M1]
          Length = 634

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 45/336 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+ +F    S+ A DF TP DV  L + L+          +   I ++YDP C
Sbjct: 292 IGDAFEYLLDKFSLNASKSA-DFYTPNDVSVLVSKLVAT--------NKRAIDSVYDPCC 342

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+   L +   HV           + +  GQE+    + +    M++  +          
Sbjct: 343 GSSSMLLELNKHV----------SLNLICGQEVNAYYYNISRQNMILHNIHF-----KDF 387

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +I+QG +L      G  +F   +S  PF   W   K +   + +  E       L     
Sbjct: 388 DIKQGDSLDSPHHIGYDKFDVVVSQIPFNVSWTA-KKSFLNDQRFKEYN----ALAPRVK 442

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVA 392
               F+ H+   L    +  G   ++     LF   +   E  IR+ ++   + ++A++ 
Sbjct: 443 AEYAFIQHMLYHL----DDDGIMVVIAPHGVLFRSAS---EESIRKIIVSKMNYLDAVIG 495

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP+++F+ TN    + I    +  +    V  I+A+  +    N+ K R  +  +   +I
Sbjct: 496 LPSNMFYSTNSPACVLIFKKNRRYD--DDVLFIDASKNF----NKIKLRNNLRKEDINKI 549

Query: 453 LDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           +  YVSR E  K+SR +  R        +  P  + 
Sbjct: 550 VGTYVSRAEVDKYSRRVSLREIDENNCNLNIPRYVD 585



 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 8   AASLANFIWKNAEDLW-----GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           ++ L   +W   E+L      G     DF K  L F   + L   LE       EK    
Sbjct: 2   SSRLGRQLWDKYEELRTNSMVGFLTDEDFQKYFLGFITYKYLSENLELYLDKELEKDDLK 61

Query: 63  GGSNIDLESFVKVAG-------YSFYNTSEYSLSTLGSTNTRNNLESYIA---------- 105
                + E++ KV           F   +    + + S N   ++   +           
Sbjct: 62  FEEAYNFENYGKVLAKKAIYNLGYFITPNHLFRNVIASYNQGADISRELKWAFAEINSSC 121

Query: 106 ---SFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTV 150
                 ++ + +FE  +  +T     + ++  ++Y I      ++   D  
Sbjct: 122 KKTESQEDFENLFESVNLQATPLGKKQEDRNRVIYNILNALDSVDFGLDEF 172


>gi|240047533|ref|YP_002960921.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae
           HRC/581]
 gi|239985105|emb|CAT05098.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae]
          Length = 546

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 189/528 (35%), Gaps = 61/528 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  VI    L + +          V  +       +    +  +    S  N  + 
Sbjct: 26  DGNEYK-VITQVFLYKFINDKFGYEIKKVSPELNVADKWDESYANMSEEKRKSLLNRLKA 84

Query: 87  S-------------LSTLGSTNTRNNLESYIASFSDNAKAIFED---------------F 118
                          +     N     +S +   +   +AIF                  
Sbjct: 85  DVPLLEPQHLISGLWNQQKKGNFAQIFDSTMEEIAAKNEAIFATETVHKTRIPIFEKLTI 144

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +  I R + A  L     NFS  E   +       ++++E+L++ + +       ++ 
Sbjct: 145 YVTDDIKRSDFARALVDKLVNFSFEEALGEHY--DFFADMFEYLLKDYNTNGGGKYAEYY 202

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ +  +   LL+                +YDP+ GTG  +           SH     
Sbjct: 203 TPQSIAKIMAKLLIGEQKEFNSIE------IYDPSAGTGTLVMAL--------SHSIGID 248

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-GSTLSKDLFTGKRFHYCLS 297
               + Q++  +++ +    +++  L S  +  +  +        S D  + ++F + +S
Sbjct: 249 RCTIYTQDISQKSNKMLKFNLILNGLVSSLQNAIQGDTLTSPYHRSDDNKSLRQFDFVVS 308

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM----LFLMHLANKLELPPNGG 353
           NPPF   + + ++ +    +        P +P     SM    LF+ H+ N L+   N  
Sbjct: 309 NPPFKLDFSETREKLSTMPE--RFWGGVPKVPPTKKDSMAIYTLFIQHVINSLK---NET 363

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+ AIV+ +  + +      ES+I + +++  ++   V++P+++F  T     +    N 
Sbjct: 364 GKGAIVIPTGFITSKS--GVESKILKRIVDEKIVYGCVSMPSNVFANTGTNVTVLFFDNA 421

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRT 472
           +  +   KV LI+A+ L    ++   K+R + +     I++ + ++E    FS  + Y  
Sbjct: 422 RNHD---KVILIDASKLGEDYKDGKNKKRRLTEKDIDLIINTFNNKESIADFSIAVSYDD 478

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
              +   +         +D   + + E +    K     Q ++ +  K
Sbjct: 479 IKEKNYSLSAGQYFDIKIDYVEITQEEFEAKMNKYQSELQKYFEEGDK 526


>gi|323494429|ref|ZP_08099538.1| type I restriction-modification system methyltransferase subunit
           [Vibrio brasiliensis LMG 20546]
 gi|323311359|gb|EGA64514.1| type I restriction-modification system methyltransferase subunit
           [Vibrio brasiliensis LMG 20546]
          Length = 520

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 167/444 (37%), Gaps = 58/444 (13%)

Query: 39  TLLRRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
             L+ L+  LE  R   A+ E        +         A        E        +  
Sbjct: 47  MFLKFLDD-LENLRETKALVEGKDFKPAIDAPYRWRDWAAKEGSITGDELISFVNNDSTV 105

Query: 97  RNN------LESYIASF-SDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGIELH 146
           R +      L +Y+     +N K    D     FS    R+    LL  +    +GI  +
Sbjct: 106 RPDGTEGAGLFAYLKELQGENGKMDRRDVIATVFSGLHNRMLNGYLLRDVIDKVNGIHFN 165

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +     +S +YE ++R       +   +F TPR VV     +            P + 
Sbjct: 166 -SSEEMHTLSRLYETMLREMRDAAGDS-GEFYTPRPVVRFMVEVT----------KPKLG 213

Query: 207 RTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            ++ DP CGTGGFL +A++++    +      +       G E +P  + +    +L+  
Sbjct: 214 ESVLDPACGTGGFLVEALSYLEGQCETVEDRAMLQGSSIFGGEPKPLPYLLVQMNLLLHG 273

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           LE       +          +++    R    L+NPPFG            E + G LG 
Sbjct: 274 LEYPQIDSGNSLR----FPLREMGDKDRVDVILTNPPFGG-----------EEEKGILGN 318

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           F P   + ++ ++LFL  +  KL+ P  G   GGRAA+V+ +  LF    G+    I+  
Sbjct: 319 F-PDDMQTAETALLFLQLIMRKLKRPGQGSDAGGRAAVVVPNGTLFCDGVGA---RIKEE 374

Query: 381 LLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEG 438
           LL+N  +  IV LP  +F   T+I   L         +R G  + I   ++ T   R + 
Sbjct: 375 LLKNFNLHTIVRLPEGVFSPYTDIPANLLFF------DRSGPTKDIWYYEVSTPEGRRKY 428

Query: 439 KKRRIINDDQRRQILDIYVSRENG 462
            K   ++  +    LD + SR   
Sbjct: 429 TKTNPLDYSEFSDCLDWWHSRTEN 452


>gi|312278102|gb|ADQ62759.1| Putative HsdM [Streptococcus thermophilus ND03]
          Length = 534

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/522 (17%), Positives = 197/522 (37%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESF------- 72
           +  ++  +   F   + L          V  +        ++    +  LE         
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAQDVDSENTYDRLVSMSEEDYDWLLEDIGTSTAWM 86

Query: 73  ----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      K     FY T E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPNQFIETLHRKQNESDFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYKICKNF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI+   K   + K   N       +    +      S ++E++I+ +  +      ++ T
Sbjct: 144 TISDSSKRNEVAKAIINLLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPEGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        + +IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKKIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAIEDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E D        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFDAKMTAFQDKLSDLFQQ 516


>gi|325989583|ref|YP_004249282.1| putative type I restriction-modification system DNA methylase, HsdM
           [Mycoplasma suis KI3806]
 gi|323574668|emb|CBZ40321.1| probable type I restriction-modification system DNA methylase, HsdM
           [Mycoplasma suis]
          Length = 614

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 205/576 (35%), Gaps = 61/576 (10%)

Query: 9   ASLANFIWKNAEDLWGDF--KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + LA  +W    +L   F  K +++ K  L    L+ ++   + T   + ++     G  
Sbjct: 2   SDLAKSLWNFCNELRVYFHLKQSEYYKPALGALFLKYMDVNYQKTLKILEKEMPIIEGVR 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL----------GSTNTRNNLESYIASFSDNAKAIFE 116
           +  + +            E   S +             N      S +    DNA  + E
Sbjct: 62  VSPKKYDFEKKGVIMLPEEAQFSKIISLPEDVTLAKIKNIDGEEMSSLGEVLDNAMKLIE 121

Query: 117 DFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F   + +  K      +       +    +     +  +YE+ +  F  E     
Sbjct: 122 RESELFEGALFKEYKKIRDNTLRDLLKVFDREDVSDNSDKLGEVYEYFLGHFSLEEKGDE 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP+ +V++   +L                   DP CG+GG       ++ +  +  
Sbjct: 182 GVFFTPKSLVNMIVNILQP-----------KGGKALDPFCGSGGMFVGIKKYM-ERETDS 229

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293
                 V  G EL P    +C   + +  ++      ++  I+Q +T   DL   + +  
Sbjct: 230 TCNQDFVFRGYELLPANVNICNMNLFMHNIQ------INSVIKQCNTFENDLLDLEGKCD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELPPN 351
           Y LSNPPF  K       +E+  + G +    P       ++   L + +  + L    N
Sbjct: 284 YVLSNPPFCVKGVN----IERAKRAGRIPFALPRGNNESFTNADYLCIQYFYSYL----N 335

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLWI 409
             G+A  V+  + L    A +G+ EIR+ ++E   ++ I+ +    F    T     LW 
Sbjct: 336 DRGKAGFVMGKNSL----ASTGDKEIRKQIIETKHVDIIIGVADKFFQSGFTG-EVCLWF 390

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
            + +K EE+R K+  I+A++ ++ +++  K+        +  I  +++ R +  K+ ++L
Sbjct: 391 FNKQKIEEQRDKILFIDASNYFSQVKDNPKQNTWSYWQSKNLIAVVWLYRGQVEKYQKLL 450

Query: 469 DYRTFGYRRI----KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +       +      V  P   +++    G+          +LS   +     + + + +
Sbjct: 451 EEYREALDKYAKEFNVQIPESGNYLDAFKGVGEKLIVEGEEELSKADKKDKNRMKEELDK 510

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           +       E F +      E   ++ K  K      
Sbjct: 511 K------WERFEEALSVVKEYDWIRSKFKKGIYRDV 540


>gi|258592717|emb|CBE69026.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [NC10 bacterium
           'Dutch sediment']
          Length = 503

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 170/493 (34%), Gaps = 59/493 (11%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  +  LE  R    +KY            +           S             +
Sbjct: 50  MFLKCFDD-LEQRREVTEKKYRLAIEPPYRWRDWAGNPDKGLTGESLLKF-------IND 101

Query: 99  NLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            L  Y+ S +        D     F  T  R+    LL  +    + +  +        +
Sbjct: 102 ELFPYLRSLTGTVAGDARDVLAAVFKETYNRMLSGYLLRDVVNLVNRLNFNSSD-DIHTL 160

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           +++YE ++R       +   +F TPR V+ L    +          +P +   + DP  G
Sbjct: 161 AHLYESMLREMRDAAGDS-GEFYTPRPVIRLIVQQV----------NPRLGERVLDPAAG 209

Query: 216 TGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TGGFL ++  H+          +        G E +P  + + +  +L+  L+   R +L
Sbjct: 210 TGGFLVESYEHLKAQVKSVEDRRRLQEDTLFGIEKKPMPYLLGMMNLLLHGLD---RPNL 266

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            ++    + L +   +G R+H  ++NPPFG            E + G    F P   + S
Sbjct: 267 LRDNALRNPLVQITDSGARYHVIMTNPPFGG-----------EEEKGVQDNF-PDATRTS 314

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + ++LFL  +   L+     GGR  +V+ +  LF        + +++ LLE+  +  IV 
Sbjct: 315 ETALLFLQFIMRSLKR----GGRCGMVVPNGTLF---GDGVCARVKKELLEHFNLHTIVR 367

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRR 450
           LP  +F   T+I T L         +R G  + I   +      R    K + +  ++  
Sbjct: 368 LPNGVFAPYTSIPTNLLFF------DRSGPTKEIWYYEQPLPEGRKNYTKTQPLQFEEFA 421

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIK---VLRPLRMSFILDKTGLARLEADITWRKL 507
             +  + +RE    +  +              +   L +     K     L  +     +
Sbjct: 422 PCVAWWKNREENDRAWKVSINNVLKYDKNSNLISANLDIKNPNGKRDFEHLPPEQLADDI 481

Query: 508 SPLHQSFWLDILK 520
               Q     + +
Sbjct: 482 LKKEQQILEIMAE 494


>gi|240016476|ref|ZP_04723016.1| hypothetical protein NgonFA_04779 [Neisseria gonorrhoeae FA6140]
          Length = 533

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 183/517 (35%), Gaps = 37/517 (7%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +ID ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I       L        +   L   ++ +     +     G     
Sbjct: 235 HAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSLNNVVQGNTILSPAHKDASGCL--- 291

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K+F + +SNPPF   +   +D +E +  +       P +       M        
Sbjct: 292 -----KKFDFIVSNPPFKLDFSDFRDRLESDENHERFFAGIPKIKPTKKEKMEIYQLFIQ 346

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F  T   
Sbjct: 347 HILFSLKENGKAAIVLPTGFITAKS--GIDKKIREYLVENKMLAGVVSMPSNIFATTGTN 404

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + +++    
Sbjct: 405 VSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNKQAVED 460

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           FS ++ Y     +   +         +D   ++  E 
Sbjct: 461 FSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|59801126|ref|YP_207838.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090]
 gi|254493837|ref|ZP_05107008.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291]
 gi|59718021|gb|AAW89426.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090]
 gi|226512877|gb|EEH62222.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291]
          Length = 533

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 183/517 (35%), Gaps = 37/517 (7%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +ID ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I       L        +   L   ++ +     +     G     
Sbjct: 235 HAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSLNNVVQGNTILSPAHKDASGCL--- 291

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K+F + +SNPPF   +   +D +E +  +       P +       M        
Sbjct: 292 -----KKFDFIVSNPPFKLDFSDFRDRLESDENHERFFAGIPKIKPTKKEKMEIYQLFIQ 346

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F  T   
Sbjct: 347 HILFSLKENGKAAIVLPTGFITAKS--GIDKKIREYLVENKMLAGVVSMPSNIFATTGTN 404

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + +++    
Sbjct: 405 VSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNKQAVED 460

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           FS ++ Y     +   +         +D   ++  E 
Sbjct: 461 FSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|121594953|ref|YP_986849.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607033|gb|ABM42773.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 492

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 173/467 (37%), Gaps = 65/467 (13%)

Query: 38  FTLLR---RLECALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+    LE  LE TR        ++L +     D E     A   F +   +     
Sbjct: 34  LLFLKVFDALEEELELTRDDYQSPMAEHLRWRHWAADAEGMTGEALLDFVDKQLFPALKG 93

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S + + N   Y+       + +FED         ++   LL ++    + I+ +     
Sbjct: 94  LSADPQRNPRGYV------VRGVFED-----AYNYMKSGHLLRQVVNKLNAIDFNRQ-AE 141

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               +++YE ++R   S  +  A +F TPR V      +           +P +  ++ D
Sbjct: 142 RHQFNDLYEKILRDLQSAGN--AGEFYTPRAVTQFMVDMT----------NPQLGESVMD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTGGFL  A+ H+     + +   +L     G E +   H +CV  +L+  +E   +
Sbjct: 190 PATGTGGFLVCAIEHLRKQVHNAEQEAVLQNSIRGVEKKQLPHMLCVTNLLLHGIEVPSQ 249

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + +     +D     R +  L+NPPFG   E   +A              P   
Sbjct: 250 IVHDNTLARP---LRDYTAADRVNVILTNPPFGGIEEPGIEA------------GFPADV 294

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL+ + + L+     GGRAA+VL    LF       ++ I+  LL++  +  
Sbjct: 295 RTKETADLFLVLIQHLLK----PGGRAAVVLPDGFLF---GEGVKARIKEQLLQHCNLHT 347

Query: 390 IVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDD 447
           IV LP  +F   T I T L   +  +        Q I   +  +        K + I  D
Sbjct: 348 IVRLPGGVFAPYTGIKTNLLFFTKGQP------TQHIWYYEHPYPQGVKTYNKTKPIRID 401

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +       +   E   F+  ++       ++ + +     + LD+  
Sbjct: 402 EFDA-EKAWWGTEQDGFAARVENER--AWKVGIDQIKAAGYNLDQKN 445


>gi|291528113|emb|CBK93699.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 545

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/535 (16%), Positives = 185/535 (34%), Gaps = 64/535 (11%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG--------SNIDLESF------- 72
            +++  +I    L + L            E+              S  D E         
Sbjct: 30  SSEYK-IITEIFLYKFLNDKFIYEVQQADEELKNSENVEQALNIMSEDDYEMLMMLLPPA 88

Query: 73  -VKVAGYSFY-----------NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             K+    F                +  +    +NT  ++ S      D  + +F+    
Sbjct: 89  TAKLKREHFISYLFNHKNDEKFNELFDSTLWDISNTNLDVFSVSTGSGDKIR-LFDQNLS 147

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            +      ++     +             +      + I+E+LI+ +  +  + A ++ T
Sbjct: 148 QNVTESNRRSDFCKAMIDKLVTFSFAEAFSQKYDFFATIFEYLIKDYNKDFGKYA-EYYT 206

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +  +   +++               T+YDP  G+G  +    + + +         I
Sbjct: 207 PHSIASIIARIMVPEGVQNV--------TVYDPAAGSGTLVLALAHEIGESNCTIYTQDI 258

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
                + L        +   L   +  D         +Q +          +F Y +SNP
Sbjct: 259 SQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKN-------GLMKFDYIVSNP 311

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGR 355
           PF   +  ++D +  +          P +P  +  SM     FL H+   ++     GGR
Sbjct: 312 PFNVDFSDNRDTLAGDIYKERFWAGVPNVPNKNKDSMAIYQMFLQHIIFSMK---ENGGR 368

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+ +  L  G       +IR  ++E+ ++  +V++P+++F  T     +  L N K 
Sbjct: 369 AAVVVPTGFLTAGT--RIPKKIRERIVEDRMLRGVVSMPSNIFATTGTNVSVLFLDNSKK 426

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
            E+     L++A+ L T I+ +GK +R +++ ++   I+D + + E    FS ++DY   
Sbjct: 427 YEQA---ILMDASKLGTKIKVDGKNQRTVLSPEEIENIIDTFNNFETKDDFSVVVDYDKI 483

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQ 524
             ++            ++   L + E          KL+ L         + + Q
Sbjct: 484 EQKKCSFSAGQYFEVKIEYVELTQEEFQKKMDGYTEKLTELFAEGNALQTEILEQ 538


>gi|315444136|ref|YP_004077015.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315262439|gb|ADT99180.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 477

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/500 (18%), Positives = 159/500 (31%), Gaps = 90/500 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFG 63
           +   + N +W     L       D+G  I        ++  +               A  
Sbjct: 2   TTGDVVNKLWGFCHVLR--HDGIDYGDYIEQLTYLLFIKMADER------------GAEL 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             + D     K +G    +    +L TLG  +                  I  D  FS +
Sbjct: 48  PQHTDWPYLRKQSGSDLLDAYVEALRTLGKEH-----------------GILGDI-FSGS 89

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             R      L K+       E     +   V +  +E L+ +  SE  +GA  + TPR +
Sbjct: 90  QNRFSNPVNLQKLIGLIDQTEWT--AIDTDVKAAAFEGLLEKAASEGKKGAGQYFTPRIL 147

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKI 236
           +      +                 + DP  GTGGFL  A   +              K 
Sbjct: 148 IQSMVRCVKP------DPRASKDFKVCDPAVGTGGFLIAAYEWLKAETKGGAFDRDTAKR 201

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G EL P    + +  + + ++E       S     GS         +R+   L
Sbjct: 202 IRRQTYYGNELVPRPRRLALMNLYLHQVEPRITLGDSIYEVPGS---------QRYDVIL 252

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPPFG K        E              + + S+  + FL H+   L+     GGRA
Sbjct: 253 MNPPFGTKGAGQPPDRED------------FVVQTSNKQLNFLQHVLTTLK----KGGRA 296

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414
           A+V+  + LF  +AG    E+ + L+E+  +  ++  P   F  +     T +   +  +
Sbjct: 297 AVVVPDNVLFAQQAG----EVFQVLMEDCDLHTVLRCPRGTFSPYTEGTKTNVIFFTKGR 352

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             E           D  +++    KK R ++     +    Y    NG  S+  +  +  
Sbjct: 353 PTEHT------WIYDARSNVPKITKKSRPLSPRHFAEFEKCYGDDPNG-LSKRSEKESAE 405

Query: 475 YRR--IKVLRPLRMSFILDK 492
            R     +       + LD 
Sbjct: 406 GRWRSFTIDEVKEHHYKLDA 425


>gi|325973139|ref|YP_004250203.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
 gi|323651741|gb|ADX97823.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
          Length = 614

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/576 (16%), Positives = 204/576 (35%), Gaps = 61/576 (10%)

Query: 9   ASLANFIWKNAEDLWGDF--KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + LA  +W    +L   F  K +++ K  L    L+ ++   + T   + ++     G  
Sbjct: 2   SDLAKSLWNFCNELRVYFHLKQSEYYKPALGALFLKYMDVNYQKTLKILEKEMPIIEGVR 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL----------GSTNTRNNLESYIASFSDNAKAIFE 116
           +  + +            E   S +             N      S +    DNA  + E
Sbjct: 62  VSPKKYDFEKKGVIMLPEEAQFSKIISLPEDVTLAKIKNIDGEEMSSLGEVLDNAMKLIE 121

Query: 117 DFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F   + +  K      +       +    +     +  +YE+ +  F  E     
Sbjct: 122 RESELFEGALFKEYKKIRDNTLRDLLKVFDREDVSDNSDKLGEVYEYFLGHFSLEEKGDE 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP+ +V++   +L                   DP CG+GG       ++ +  +  
Sbjct: 182 GVFFTPKSLVNMIVNILQP-----------KGGKALDPFCGSGGMFVGIKKYM-ERETDS 229

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293
                 V  G EL P    +C   + +  ++      ++  I+Q +T   DL   + +  
Sbjct: 230 TCNQDFVFRGYELLPANVNICNMNLFMHNIQ------INSVIKQCNTFENDLLDLEGKCD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELPPN 351
           Y LSNPPF  K       +E+  + G +    P       ++   L + +  + L    N
Sbjct: 284 YVLSNPPFCVKGVN----IERAKRAGRIPFALPRGNNESFTNADYLCIQYFYSYL----N 335

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLWI 409
             G+A  V+  + L    A +G+ EIR+ ++E   ++ I+ +    F    T     LW 
Sbjct: 336 DRGKAGFVMGQNSL----ASTGDKEIRKQIIETKHVDIIIGVADKFFQSGFTG-EVCLWF 390

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRML 468
            + +K EE+R K+  I+A++ ++ +++  K+        +  I  +++ R +  K+ ++L
Sbjct: 391 FNKQKIEEQRDKILFIDASNYFSQVKDNPKQNTWSYWQSKNLIAVVWLYRGQVEKYQKLL 450

Query: 469 DYRTFGYRRI----KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +       +      V  P   +++     +          +LS   +     + + + +
Sbjct: 451 EEYREALDKYAKEFNVQVPESGNYLDAFKEVGEKLIVEGEEELSKADKKDKNRMKEELDK 510

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           +       E F +      E   ++ K  K      
Sbjct: 511 K------WERFEEALSVVKEYDWIRSKFKKGIYRDV 540


>gi|126031631|pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
           Protein (Np_813429.1) From Bacteroides Thetaiotaomicron
           Vpi-5482 At 2.20 A Resolution
 gi|126031632|pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
           Protein (Np_813429.1) From Bacteroides Thetaiotaomicron
           Vpi-5482 At 2.20 A Resolution
          Length = 445

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 104/506 (20%), Positives = 171/506 (33%), Gaps = 81/506 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  SL   +W  A  L G      F   I   T L  L+   E       E  +  G
Sbjct: 5   NSSTEQSLTKKVWNLATTLAGQGIG--FTDYITQLTYLLFLKXDAENVEXFGEESAIPTG 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL +F    G       E +L  L              S  DN         ++  
Sbjct: 63  YQWADLIAF---DGLDLVKQYEETLKLL--------------SELDNLIGTI----YTKA 101

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++K   L K+       +         V   IYE ++ + G +   GA  + TPR +
Sbjct: 102 QNKIDKPVYLKKVITXIDEEQWLI--XDGDVKGAIYESILEKNGQDKKSGAGQYFTPRPL 159

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--- 240
           +      +          +P    T+ DP CGTGGFL  A ++     +  +    L   
Sbjct: 160 IQAXVDCI----------NPQXGETVCDPACGTGGFLLTAYDYXKGQSASKEKRDFLRDK 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             HG +  P    +    + +  + +D    + ++  +                 L+NPP
Sbjct: 210 ALHGVDNTPLVVTLASXNLYLHGIGTDRSPIVCEDSLE-------KEPSTLVDVILANPP 262

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG +     D    +              +  +  + FL H    L+     GGRAA+VL
Sbjct: 263 FGTRPAGSVDINRPDF-----------YVETKNNQLNFLQHXXLXLKT----GGRAAVVL 307

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S  +      
Sbjct: 308 PDNVLFEAGAGE---TIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQP----- 359

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             + I   D  T I++     + +        +  Y +R       + D       R + 
Sbjct: 360 -TKEIWFYDYRTDIKHTLATNK-LERHHLDDFVSCYNNRVE-----IYDAENNPQGRWR- 411

Query: 481 LRPLRMSFILDKTGLARLEADITWRK 506
             P+      DKT L     DITW K
Sbjct: 412 KYPVDEIIARDKTSL-----DITWIK 432


>gi|240014036|ref|ZP_04720949.1| hypothetical protein NgonD_05208 [Neisseria gonorrhoeae DGI18]
 gi|240121602|ref|ZP_04734564.1| hypothetical protein NgonPI_07528 [Neisseria gonorrhoeae PID24-1]
          Length = 533

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 188/522 (36%), Gaps = 47/522 (9%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +ID ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                     K+F + +SNPPF   +   +D +E +  +       P +       M   
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDRLESDENHERFFAGIPKIKPTKKEKMEIY 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F 
Sbjct: 342 QLFIQHILFSLKENGKAAIVLPTGFITAKS--GIDKKIREYLVENKMLAGVVSMPSNIFA 399

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + ++
Sbjct: 400 TTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNK 455

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    FS ++ Y     +   +         +D   ++  E 
Sbjct: 456 QAVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|225376200|ref|ZP_03753421.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM
           16841]
 gi|225211846|gb|EEG94200.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM
           16841]
          Length = 549

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/545 (15%), Positives = 190/545 (34%), Gaps = 65/545 (11%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG--------SNIDLESF------- 72
            +++  +I    L + L            EK              S  D E         
Sbjct: 30  SSEYK-IITEIFLYKFLNDKFLYEVQQADEKLKNSENMEQALNNMSEDDYEMLMMLLPPA 88

Query: 73  -VKVAGYSFY-----------NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             K+    F                +  +    +NT  ++ S      D  + +F+    
Sbjct: 89  TAKLKREHFISYLFNHKNDEKFNELFDSTLWDISNTNLDVFSVSTGSGDKIR-LFDQNLS 147

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            +      ++     +             +      + I+E+LI+ +  +  + A ++ T
Sbjct: 148 QNVTESNRRSDFCKAMIDKLVTFSFAEAFSQKYDFFATIFEYLIKDYNKDFGKYA-EYYT 206

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +  +   +++               T+YDP  G+G  +    + + +         I
Sbjct: 207 PHSIASIIARIMVSEGVQNV--------TVYDPAAGSGTLVLALAHEIGESNCTIYTQDI 258

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
                + L        +   L   +  D         +Q +          +F Y +SNP
Sbjct: 259 SQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKN-------GLMKFDYIVSNP 311

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGR 355
           PF   +  ++D +  +          P +P     SM     FL H+   ++     GGR
Sbjct: 312 PFNVDFSDNRDTLAGDIYKERFWAGVPNVPNKKKDSMAIYQMFLQHIIFSMK---ENGGR 368

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+ +  L  G       +IR  ++E+ ++  +V++P+++F  T     +  L N K 
Sbjct: 369 AAVVVPTGFLTAGT--GIPKKIRERIVEDRMLRGVVSMPSNIFATTGTNVSVLFLDNSKK 426

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473
            E+     L++A+ L T ++ +GK +R +++ ++   I++ + + E    FS ++DY   
Sbjct: 427 YEQA---ILMDASKLGTKVKVDGKNQRTVLSPEEIEDIINTFNNFEPKDDFSVVVDYDKI 483

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529
             ++            ++   L + E          KL+ L     + +   +++Q+   
Sbjct: 484 VQKKCSFSAGQYFEVKIEYVELTQEEFQEKMNSYTEKLTELFAE-GIALQAEILEQLKKV 542

Query: 530 GWAES 534
            + E 
Sbjct: 543 KYEEQ 547


>gi|21228806|ref|NP_634728.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907325|gb|AAM32400.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 474

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 92/497 (18%), Positives = 164/497 (32%), Gaps = 88/497 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           + +   +W     L    +  D+G  I        L+                       
Sbjct: 2   SDIVQKLWGFCHTLR--HEGIDYGDYIEQITYLLFLKM---------------------- 37

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D           + +  E S + L  T   N+    +    +    +  D  F+  ++
Sbjct: 38  -ADEREIKLPEACDWQSLKEKSGTEL--TEHYNDALRTLGKQEE----LLGDI-FAGALS 89

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R      L KI       E     +   V +  +E L+ +  SE  +GA  + TPR V+ 
Sbjct: 90  RFHNPVSLKKIISLIDETEWT--GLDIDVKAMAFEGLLEKAASEGKKGAGQYFTPRIVIQ 147

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPP 238
                                 ++ DP CGTGGFL  A   +              K   
Sbjct: 148 TIVRCTKP------DPRNHRDFSIMDPACGTGGFLVCAYEWLKAVTGGGALERDLAKKIR 201

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQEL      + +  + +  +E +         + G ++ + +   K+F   L+N
Sbjct: 202 YSTYFGQELVERPRRLALMNLYLHGIEPEI--------KLGDSIYE-IPESKKFDVVLTN 252

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K        E              + + S+  + F+ H+   L+     GGRAAI
Sbjct: 253 PPFGTKGANQAPVRED------------FVIETSNKQLNFIQHVMTILK----PGGRAAI 296

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTE 416
           V+  + LF  +AG    E+ + L E+  +  ++ LP   F  +     T +   +     
Sbjct: 297 VVPDNVLFADQAG----EVFKVLCEDCDLHTVLRLPDGTFTPYSPGTKTNVIFFTKGIPT 352

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-DYRTFGY 475
           +R          D  T++    KK R +  +   +    + S  NG+  R   D +   +
Sbjct: 353 DRT------WVYDCRTNVPKITKKDRPLTKEHFAEFEKCFGSDPNGRAKREEKDSQEDRW 406

Query: 476 RRIKVLRPLRMSFILDK 492
           R   +       + +D 
Sbjct: 407 RSFHISELKARDYKIDS 423


>gi|332366399|gb|EGJ44150.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK355]
          Length = 534

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/522 (18%), Positives = 200/522 (38%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNIDL--------------- 69
           +  ++  +   F   + L         AV  K  Y      + D                
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAKAVDAKNIYEELIKMSHDDYSWLLEDIGTATAQL 86

Query: 70  --ESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             E F+     K     FY T E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPEQFIETLHRKQNEDDFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEK-AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI+   K   +   I    + ++   D         S ++E++I+ +  +      ++ T
Sbjct: 144 TISDSSKRNEVAKSIINLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGHDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T++ +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTITANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVEALPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKDDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIIETFIQKEAVEDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNHSLSAGQYFDIKIDYVDITAEEFEAKMTAFQNKLSDLFQQ 516


>gi|296876905|ref|ZP_06900951.1| type I restriction enzyme M protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432097|gb|EFH17898.1| type I restriction enzyme M protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 534

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 196/522 (37%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLAFGGSNIDLESF------- 72
           +  ++  +   F   + L          + E         ++    +  LE         
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYQAKVLDESNTYENLLAMSEEDYDWLLEDIGTSTAWL 86

Query: 73  ----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      +    +FY T E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPDQLIGTLHRQQNEATFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYKICKNF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI+   K   + K   N       +    +      S ++E++I+ +  +      ++ T
Sbjct: 144 TISDSSKRNEVAKAIINLLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGDDKPQNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I+  ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVGTFIKKEAVEDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQNKLSDLFQQ 516


>gi|302560831|ref|ZP_07313173.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000]
 gi|302478449|gb|EFL41542.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000]
          Length = 503

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 173/487 (35%), Gaps = 78/487 (16%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLECALEPTRSAV 55
            S + LA+ I    + +       GD          LP       L+  +  +E    A+
Sbjct: 15  TSQSRLASLIKSARDTMRKDAGMNGDLDR-------LPQLSWLLFLKAFDGRVEQEGEAL 67

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNA 111
                     +    +  +   +  + T          +   + L  ++A      +++ 
Sbjct: 68  --------DPDGYRRAIEEPYRWEDWATVPDFSGDELKSFVNDKLIPHLAGLVGDDAEDP 119

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +     F   + R++   LL  +    + I           M+ +YE +++       
Sbjct: 120 RNVISTI-FKDVVNRMQSGTLLRDLVDIVNQIHF-VSADDIHTMAFVYESILKEMRDVAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            G+ +F TPR V                +    +  ++ DP  GTGGFL  A   +    
Sbjct: 178 -GSGEFYTPRPVNRFMVQ----------QSFLELGESILDPASGTGGFLVQAYEALKGQV 226

Query: 232 SHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                   L     G E +P  + +    +L+  +++   R  S  ++  ++ + D    
Sbjct: 227 KTDTQRRRLHKDIRGIEKKPLPYLLGSMNLLLHGIDAPHIRRGSALLEMRNSNAAD---- 282

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    L+NPPFG + E                   P   +  + + LFL  + ++L+L 
Sbjct: 283 -KVDVVLTNPPFGGEEEATVVKA------------FPDGFRTQETAWLFLYSILDQLKL- 328

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
              GGR AIVL +  LF     S  ++I++ L+++  +  +V LP  +F   T I + + 
Sbjct: 329 ---GGRCAIVLPNGSLFAVGENSIGAKIKKKLMKDCNLHTVVRLPQGVFAPYTQIPSNIL 385

Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYV-----SRENG 462
                   E+ G  Q +   ++     R    K + +  +     +D +       RE G
Sbjct: 386 FF------EKTGPTQEVWFYEVPLPEGRRGYTKTKPMRFEDFESCVDWWGGKQREGREVG 439

Query: 463 KFSRMLD 469
           + + ++ 
Sbjct: 440 EQAWVVP 446


>gi|325697669|gb|EGD39554.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK160]
          Length = 534

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 199/522 (38%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNIDL--------------- 69
           +  ++  +   F   + L         AV  K  Y      ++D                
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQL 86

Query: 70  --ESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             E F+     K    +FY   E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPEQFIETLHRKQNEDNFYEIFETTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            I+   K   + + I    + I+             S ++E++I+ +  +      ++ T
Sbjct: 144 NISDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKAIRQHLVDNQMLGGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I+D ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVDTFIKKEAVEDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQ 516


>gi|302877623|ref|YP_003846187.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302580412|gb|ADL54423.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/546 (16%), Positives = 180/546 (32%), Gaps = 81/546 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D           +++     L+  +   E     +++ YL+    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQLVW-MLFLKIFDDR-ESEWELLQDNYLS---- 55

Query: 66  NIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDFS 121
                   +   +  +  N    +   L          +   + +   + +A      F 
Sbjct: 56  -----PLPEAYRWRNWAANPEGMTGEALKQFLDNEMFPALQQLEARGGDQRAYVIRSVFE 110

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                ++   L+ ++                 +  ++YE L+R   +  +  A +F TPR
Sbjct: 111 GAYNYMKSGQLIRQVVNKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPP 238
            V      +           +P +   + DP CGTGGFL+ ++ H+          +   
Sbjct: 169 AVTEFMVRMT----------NPRLGEKVMDPACGTGGFLSCSIEHIRRQDVKTVDDEAAL 218

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYC 295
                G E +P  H +C   M++  +      D+  NI+  +TL++        +R    
Sbjct: 219 QASIFGIEKKPMPHLLCTTNMILHGI------DVPSNIRHDNTLARPLISWTPKERVDVV 272

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGR
Sbjct: 273 VTNPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMQLLKA----GGR 316

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRK 414
           AA+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   S   
Sbjct: 317 AALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSKGA 373

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---ENGKFSRMLDYR 471
                   Q I   +         K        +  +  D+  +    E+  FS  ++  
Sbjct: 374 P------TQHIWFYEH--PYPAGVKSYNKTKPMKIEEF-DVEAAWWGVESDGFSHRVENE 424

Query: 472 TFGYRRIKV----LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                ++ +     R   +       G   +             QS    +   +   + 
Sbjct: 425 Q--AWKVSLDDIKARNYNLDCKNPHVGEQEIHDPDVLLAQYAAMQSEIAALRNQLKTILG 482

Query: 528 PYGWAE 533
                E
Sbjct: 483 EALNRE 488


>gi|83943083|ref|ZP_00955543.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp.
           EE-36]
 gi|83846091|gb|EAP83968.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 175/519 (33%), Gaps = 88/519 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
              ++   IW     L GD     + + +   T L  L+ A E       E+ L      
Sbjct: 2   KNENVVQRIWNLCHILRGDGIS--YHQYVSELTYLLFLKIAQENG----VERLLPAKFRW 55

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSST 123
            DL +  +     FY      L T   +     + ++   + S S+N +A+         
Sbjct: 56  NDLVNHPEDGLLGFYQEMLTHLGTSAESEIIRAIYAFPTTVFSHSENLRAV--------- 106

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                            + IE H   + D     IYE LI +   +V  GA  + TPR +
Sbjct: 107 -------------IDGITEIEWH--DLSDDRFGQIYEGLIEKSSQDVRSGAGQYFTPRPL 151

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V+    ++           P +   + DP  G+GGFL  A   +    S          +
Sbjct: 152 VNSMVKVM----------RPRLGEMIQDPAAGSGGFLIAADQFIRSGNSDSAYSKNPPKY 201

Query: 244 -GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E+E  T  +C+    +  L+++           G  L+ D    +  +  L+NPPFG
Sbjct: 202 QGAEIEKNTRRICLMNTFLNGLDAEVF--------YGDALTDDGAGFQSANLVLANPPFG 253

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K                           ++  + FL H+   LE     GGRAA+VL  
Sbjct: 254 NK------------AGSRRKLRADIPYPNANKQLAFLQHIYLCLET----GGRAAVVLPD 297

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           + LF    G     +RR L+E+  +  ++ LP  +F    + T +   S    +      
Sbjct: 298 NALFEEGVG---KLVRRDLMESCNLHTVLRLPKGIFSSAGVKTNVLFFSRDGEKSTED-- 352

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------REN----GKFSRMLDYR 471
             +   DL +++   G K   +  +   +    +         RE+    G+F R     
Sbjct: 353 --VWFYDLRSNMPTFG-KNNQLKPEHFTEFERCFGEDPLGRSSREDQGEMGRF-RCFSRE 408

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
               R   +        + D   +     DI    LS L
Sbjct: 409 EIAERNENLDISWLREEVNDAGDIIGAPEDIASAILSHL 447


>gi|320155757|ref|YP_004188136.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio vulnificus MO6-24/O]
 gi|319931069|gb|ADV85933.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio vulnificus MO6-24/O]
          Length = 496

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 161/405 (39%), Gaps = 53/405 (13%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+   D+   
Sbjct: 83  NDDLFPTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       L           P +   + DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDP 189

Query: 213 TCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  + +HV +     +          HG E +   H +C+  M++  +E    
Sbjct: 190 ACGTGGFLACSFDHVKENYVTNASDHQTLQKQIHGVEKKQLPHLLCITNMMLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+ G+TL+K L       +   +NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L    +  GRA +VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLIVEVL----DKDGRAGVVLPDGTLF---GEGVKTKIKKMLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F   T I T +   +  +        + +   +  +        K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPEGVKNYSKTKPMKF 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           ++ +Q +D + +  +G  SR+    T    ++ +   +  +F LD
Sbjct: 399 EEFQQEIDWWGNEADGFASRI---ETKQAWKVSIEDIIERNFNLD 440


>gi|254507574|ref|ZP_05119707.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio
           parahaemolyticus 16]
 gi|219549461|gb|EED26453.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio
           parahaemolyticus 16]
          Length = 496

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 162/413 (39%), Gaps = 53/413 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+   D+   
Sbjct: 83  NDDLFPTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       L           P +   + DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  + +HV +                HG E +   H +C+  M++  +E    
Sbjct: 190 ACGTGGFLACSFDHVKENYVTSTADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+ G+TL+K L       +   +NPPFG     ++D +EK           P  
Sbjct: 246 --VPVQIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L    +  GRA +VL    LF       +++I++ L E   + 
Sbjct: 292 MQTRETADLFLQLIVEVL----DKDGRAGVVLPDGTLF---GEGVKTKIKKMLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F   T I T +   +  +        + +   +  +        K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPEGVKNYSKTKPMKF 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++ +Q +D + +  +G  SR+    T    ++ +   +  +F LD     + E
Sbjct: 399 EEFQQEIDWWGNEADGFASRI---ETKQAWKVSIEDIIERNFNLDIKNPYQGE 448


>gi|327472745|gb|EGF18172.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK408]
          Length = 534

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 92/522 (17%), Positives = 198/522 (37%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNIDL--------------- 69
           +  ++  +   F   + L         AV  K  Y      ++D                
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQL 86

Query: 70  --ESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             E F+     K    +FY   E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPEQFIETLHRKQNEDNFYEVFETTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYKICKNF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            I+   K   + +   N       +    +      S ++E++I+ +  +      ++ T
Sbjct: 144 NISDSSKRNQVARAIINLLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEVVDDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKMIAFQNKLSDLFQQ 516


>gi|27365370|ref|NP_760898.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Vibrio vulnificus CMCP6]
 gi|27361517|gb|AAO10425.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Vibrio vulnificus CMCP6]
          Length = 496

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 164/406 (40%), Gaps = 55/406 (13%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+   D+   
Sbjct: 83  NDDLFPTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       L           P +   + DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDP 189

Query: 213 TCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFL  + +HV +      + H+       HG E +   H +C+  M++  +E   
Sbjct: 190 ACGTGGFLACSFDHVKENYVTSAADHQTLQK-QIHGVEKKQLPHLLCITNMMLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+ G+TL+K L +     +   +NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L    +  GRA +VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----DKEGRAGVVLPDGTLF---GEGVKTKIKKMLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T +   +  +        + +   +  +        K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPEGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++ +Q +D + +  +G  SR+    T    ++ +   +  +F LD
Sbjct: 398 FEEFQQEIDWWGNEADGFASRI---ETKQAWKVSIEDIIERNFNLD 440


>gi|322515486|ref|ZP_08068472.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322118453|gb|EFX90704.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 552

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 84/580 (14%), Positives = 205/580 (35%), Gaps = 66/580 (11%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-- 55
           MTE  F      L + +    A    G+    +F  +I    L + L          +  
Sbjct: 1   MTEQLFQQKTKELIDSLKAICANYGLGN-DGNEFK-IITQVFLYKFLNDKFAFEIKQIDP 58

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103
                    +       ++  L +  +    +F   +++       +N  N    +    
Sbjct: 59  SLAKSESWEQALSKMPAADFKLLTMRRNGDTAFLQPNQFISHLFNQSNIANFANLFDETL 118

Query: 104 --IASFSDNAKAI------FEDFDFSSTIARLEKAGLLYK-----ICKNFSGIEL-HPDT 149
             IA+ + NA             +    +++              +          H   
Sbjct: 119 MGIATHTKNANIFSVKTEGGAKINLFDGVSQYIADPSKRDAFCRAVINKLVEFSFEHIFN 178

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                 + I+E+LI+ + +       ++ TP  V  +  A+L+  +     ++     + 
Sbjct: 179 QKFDFYATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILVPENVRGQLQNV----SC 234

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ G+G  L +  + + +           + + Q++  ++  +         L  +  
Sbjct: 235 YDPSAGSGTLLMNIAHAIGE--------KKCIIYTQDISQKSSNLLRL-----NLILNNL 281

Query: 270 RDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                N+ QG+T++          ++F Y +SNPPF   + + ++ +             
Sbjct: 282 VASIPNVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREELAMPAHKDRFFAGV 341

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P +PK     M         +       G+AA+VL +  +        + +IR +L+   
Sbjct: 342 PNVPKAKKEKMAIYQLFVQHIIHSLKADGKAAVVLPTGFITAQS--GIDKKIREFLVNEK 399

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++  +V++P+++F  T     +  L        +  V LI+A++L   I+    ++ +++
Sbjct: 400 MLAGVVSMPSNIFATTGTNVSILFLDR----ANKENVVLIDASNLGEKIKEGKNQKTVLS 455

Query: 446 DDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
            ++ ++I+D++  ++    FS ++ Y     +   +         +D   +   E +   
Sbjct: 456 AEEEQRIIDVFNQKKAEDDFSVVVSYADIAAKNHSLSAGQYFDVKIDHIDITAAEFE--- 512

Query: 505 RKLSPLHQS--FWLDILKPMMQQIYPYGWAESFVKESIKS 542
           +K++   Q+        K +  QI        F  +++++
Sbjct: 513 QKMADFQQNLTALFAESKVLESQIQQQMATLKFNAQAVEN 552


>gi|146294608|ref|YP_001185032.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566298|gb|ABP77233.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 549

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 80/531 (15%), Positives = 184/531 (34%), Gaps = 45/531 (8%)

Query: 3   EFTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           EF     +L + +    A    G+    +F  +I    L + L          + +    
Sbjct: 5   EFQQKTKTLIDSLKSICANYGLGN-DGNEFK-IITQTFLYKFLNDKFAFEAKKLDDNIAK 62

Query: 62  FGG--------SNIDLESFVKVAGYS--FYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
                      S  DL+      G          +        N  +  + +  +  D A
Sbjct: 63  ADKWEEVLAAMSEGDLDMLQLQMGGDTARLKPQHFISHLFSQQNAPDFAKLFDDTLIDIA 122

Query: 112 KAIFEDFD-----------FSSTIARLEKAGLLYKICKNFSG--IELHPDTV---PDRVM 155
               + F            F      +         C+      +E   + +        
Sbjct: 123 ITNNDVFAVKTDGGAKVVLFDRISQYIADESKRDAFCRAIINKLVEFSFERIFTQKFDFY 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + I+E+LI+ + S       ++ TP  V  +   +L+       +       + YDP+ G
Sbjct: 183 ATIFEYLIKDYNSNAGGKYAEYFTPHAVARIMAEILVP----KAQRGTVRNVSCYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +  + + +         I     Q+         +   L+  + +  + +  ++
Sbjct: 239 SGTLLMNVAHAIGENRCSIYTQDIS----QKSSNLLRLNLILNNLVHSIPNVIQGNTIQH 294

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                + +KD    KRF Y +SNPPF   +   +D ++ +  N       P  P      
Sbjct: 295 PYHVES-TKDGKALKRFDYIVSNPPFKLDFSDYRDELDSKANNERFFAGIPKAPPKDKDK 353

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           M         +       G+AA+V+ +  +        + +IR  L++N ++  +V++P+
Sbjct: 354 MAIYSLFLQHIIASLKPNGKAAVVVPTGFITAQS--GIDKKIREHLVKNKMLAGVVSMPS 411

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F  T     +  +        +GKV LI+A++L   I++   ++ +++ ++ ++I+D+
Sbjct: 412 NIFATTGTNVSILFIDAN----NKGKVVLIDASNLGEKIKDGKNQKTVLSYEEEQRIIDV 467

Query: 456 YVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  ++    FS  +DY     +   +         ++   +   +     +
Sbjct: 468 FNFKDAEEGFSVAVDYDDIEAKNYSLSAGQYFDVKIEYVDITPEQFAEKMQ 518


>gi|149369905|ref|ZP_01889756.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49]
 gi|149356396|gb|EDM44952.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49]
          Length = 541

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 185/476 (38%), Gaps = 29/476 (6%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           +  +  LE     + E        N+    F +     F +T + +L ++   N   ++ 
Sbjct: 73  KYSDDDLELLTMQISENTARIAPKNLLSRLFEQQNKPDFADTFDETLVSVAKDNI--DIF 130

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
           S +    +    +FE+    S     +K      +     G    H  T      + I+E
Sbjct: 131 SVLTQGGEKV-VLFENL---SKYVTDKKDDFCKALVNKLVGFSFEHIFTQKFDFFATIFE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI+ + S       ++ TP  V  +  A L+  DD           T YDP+ G+G  L
Sbjct: 187 YLIKDYNSNSGGKYAEYFTPHAVAKIMAACLVTGDDVNNV-------TCYDPSAGSGTLL 239

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  + + +             + Q++  ++ A+    +++  L    +  +  N     
Sbjct: 240 MNIAHAIGE--------DKCTIYSQDISQKSSALLRLNLILNNLVHSIQNIIQGNTILNP 291

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +D    ++F Y +SNPPF   +      ++ +          P +P     SM   +
Sbjct: 292 YHKQDNGQLEQFDYIVSNPPFKLDFSDYSADLDSKANKERFFAGIPKVPAKKKDSMAIYL 351

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                +       G+AAIV+ +  +        + +IR+ L+E+ ++  +V++P+++F  
Sbjct: 352 LFIQHIMHSLTAKGKAAIVVPTGFITAQS--GIDKKIRQKLVESKMLAGVVSMPSNIFAT 409

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T     +  L    T++    V L++A++L T +++   ++ +++ ++ +QI++++ ++E
Sbjct: 410 TGTNVSILFLDKTNTKD----VVLVDASNLGTKVKDGKNQKTVLSPEEEQQIINVFNAKE 465

Query: 461 -NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                S ++ Y     +   +         ++   +   E     +      ++ +
Sbjct: 466 AKDDLSVVVSYDDIKAKNYSLSAGQYFEVKIEYVDITAKEFATKMQDFESNLETLF 521


>gi|307708292|ref|ZP_07644759.1| type I restriction enzyme [Streptococcus mitis NCTC 12261]
 gi|307615738|gb|EFN94944.1| type I restriction enzyme [Streptococcus mitis NCTC 12261]
          Length = 534

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 196/522 (37%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESF------- 72
           +  ++  +   F   + L          + E         L+    +  LE         
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYQAKCLDEVNTYEHLLTLSEDDYDWLLEDIGTSTAWL 86

Query: 73  ----------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      +    +FY + E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPDQLIETLHRQQNEATFYESFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYKICKNF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI+   K   + K   N       +    +      S ++E++I+ +  +      ++ T
Sbjct: 144 TISDSSKRNEVAKAIINLLARVKFDESIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L+++ ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKAIRQHLVDHQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS    Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTASYEEIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        +LS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKLTAFQNRLSDLFQQ 516


>gi|282907753|ref|ZP_06315595.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328658|gb|EFB58929.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 237

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 25/251 (9%)

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +  +     + +I+   TL    F G  F  
Sbjct: 10  KEAKVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGHTFDA 64

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L    +  G
Sbjct: 65  VIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEG 115

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 116 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 170

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   K+S     + 
Sbjct: 171 KCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQE 226

Query: 473 FGYRRIKVLRP 483
                  +  P
Sbjct: 227 IADNDYNLNIP 237


>gi|298375501|ref|ZP_06985458.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19]
 gi|298268001|gb|EFI09657.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19]
          Length = 558

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/552 (14%), Positives = 196/552 (35%), Gaps = 69/552 (12%)

Query: 28  HTDFGKVILPFTLLRRLECAL--EPTRSAVR-EKYLAFGGSNIDLESFVKVAGYSFYNTS 84
            +++  ++    L +        E  R  +  E+       + + ++F +      ++  
Sbjct: 30  GSEYK-IVTEMFLYKFFNDKFGYEAKRDKMYGERLSKAEKWDAEYDTFTEEEVEDLFSYL 88

Query: 85  EYSLSTLGSTNTRNNLESYIAS-----FSDNAKAIFEDFDFSST---------------- 123
             S+  L   +T ++L ++          D       + +  +                 
Sbjct: 89  PASVPRLKPEHTLSHLYNFTGKGDFSTLLDATLIDIANINADTFSVTTSGKSKVNIFSAI 148

Query: 124 ----IARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 + ++      + +N +     H         S I+EHL++ F +       ++ 
Sbjct: 149 TTFVTDQQKRDEFAKSLMRNVASFNFEHVFIEKYDFFSRIFEHLLKGFNNAGGGKYAEYY 208

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR +  +   LL+  +  L         T YDP+ GTG  L    + + +         
Sbjct: 209 TPRAIAQVMARLLVGDNADLR------GVTCYDPSAGTGTLLMALAHQIGE--------D 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L +     +  N     + ++     K+F + +SN
Sbjct: 255 RCSIYSQDISEKSSEMLRLNLILNSLSASLPNVVQGNTLTEPSHTELSGALKKFDFIVSN 314

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----------SMLFLMHLANKLEL 348
           PPF   + + +D +  +       RF  G+P                + FL H+ N L+ 
Sbjct: 315 PPFKLDFPEYRDTLAADTI-----RFWAGVPNKVKKINPEKPQMGIYLCFLQHVINSLK- 368

Query: 349 PPNGGGRAAIVLSSSPLFNG-RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G++A+V+ +  + +  R       I + +++  ++   +++PT++F  T     +
Sbjct: 369 ---DTGKSAVVVPTGFITSKKRNNVVAYNILQKIVDEHIVCGCISMPTNVFATTGTNVSV 425

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
                  T +   KV LI+A+ L    +    ++R + D++   I++ + ++E    FS 
Sbjct: 426 IFFDKSATAD---KVILIDASKLGEEYKEGNNQKRRLLDNEIDLIVNTFRNKEVVEDFSV 482

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            + Y     +   +         +D   +   E +        +    + +    + ++I
Sbjct: 483 AVSYDEIKEKGYSLSAGQYFDIKIDYVDITEEEFNNRMANYKQILSEQFKES-HRLEEEI 541

Query: 527 YPYGWAESFVKE 538
                A  F + 
Sbjct: 542 MKQLDALQFNEN 553


>gi|158335391|ref|YP_001516563.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
 gi|158305632|gb|ABW27249.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
          Length = 486

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/491 (19%), Positives = 178/491 (36%), Gaps = 71/491 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECA-------LEPTRSAVRE 57
           SL+  I    + +  D          G+  L      +            ++   S +  
Sbjct: 2   SLSATIKSIQDIMRKDVGVDGDAQRIGQ--LGWMLFFKIFSDQDLELEALVDDYESPIPA 59

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           +      ++ +      + G +  +  +  L          +LE          +++FED
Sbjct: 60  ELQWSAWADSEQLGKQALTGEALLDLVDNCLFPALKELDLEDLEGIAQGRGALLRSVFED 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                    ++   LL ++    +  I+ + ++    +  ++YE L++      +  A +
Sbjct: 120 -----AYNYMKSGTLLRQVVNKINDNIDFN-ESKQRDLFGDMYEQLLKDLQGAGN--AGE 171

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--CGSHH 234
           F TPR V   A   +          +P +   + DP CGTGGFLT A  H+     GS  
Sbjct: 172 FYTPRAVTQFAIDRV----------NPQLGERVLDPACGTGGFLTCAFEHLKQQVQGSQD 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKR 291
                    G E +P  H +CV  ML+  LE      +  N++  +TL K   D     +
Sbjct: 222 LEQAKQGVWGVEKKPLPHLLCVTNMLVHGLE------VPTNVRHDNTLRKPLRDYARADQ 275

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               ++NPPFG     ++D +E         R  P   +  + + LFL+ +   L+    
Sbjct: 276 VDVVVTNPPFGG---MEEDGIE---------RGFPTEFRTRETADLFLVLVMELLKA--- 320

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410
            GGRAAIVL    LF       ++ I+  LL    +  IV LP  +F   T+I T L   
Sbjct: 321 -GGRAAIVLPDGTLF---GEGIKTRIKEKLLRECNLHTIVRLPNGVFAPYTSIKTNLLFF 376

Query: 411 SNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +  +        Q I   +  +        K + +  ++       +  RE  +F+  + 
Sbjct: 377 TKGEP------TQEIWYYEHPYPKGYKSYSKTKPMRIEEFGPEKAWWEQREENEFAWKVS 430

Query: 470 YRTFGYRRIKV 480
            +        +
Sbjct: 431 LQEIQANNYNL 441


>gi|288917625|ref|ZP_06411989.1| N-6 DNA methylase [Frankia sp. EUN1f]
 gi|288351018|gb|EFC85231.1| N-6 DNA methylase [Frankia sp. EUN1f]
          Length = 761

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 114/304 (37%), Gaps = 39/304 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             I + L+    +     +    TPR VV +A  L           +P     ++DP C 
Sbjct: 214 GPIADELLAHATTAGGRRSGLLTTPRSVVRMAVRLT----------NPVGGERIHDPFCR 263

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G FLT A +HV     +      L+  G   +     +    +L+  L         +N
Sbjct: 264 AGEFLTAAADHVRSRNPN---TSGLIASGHTSDSSIAGIARMNLLLHDL-------APQN 313

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           ++ G     D    + F   L NPPF   + +D   +           +  G P   + +
Sbjct: 314 LRVGHAGWPDQKPDEMFDLVLVNPPFNDSYWQDTTFLN--------SFWPYGEPPSHNAN 365

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             +L      L       GRAA+V+         A   ES IR  ++    ++A+V+LP 
Sbjct: 366 YAWLQFALTSL----AKDGRAAVVMPVGA--GSSANPRESFIRAAMVSAGAVDAVVSLPP 419

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            LF  T I   LWIL  R+ +  R  V  I+A    T +    + R  + D+   +I+  
Sbjct: 420 RLFAHTLIPATLWIL--RRPDHDRDDVLFIDARGAGTPV---DRIRLELRDEDIDRIVAA 474

Query: 456 YVSR 459
           Y  R
Sbjct: 475 YQDR 478


>gi|298292635|ref|YP_003694574.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya
           novella DSM 506]
 gi|296929146|gb|ADH89955.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya
           novella DSM 506]
          Length = 482

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/460 (20%), Positives = 161/460 (35%), Gaps = 64/460 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +A SL   +W  A  L         +   I     L+      E   + + E  +   GS
Sbjct: 2   NAQSLVAKVWNFAHVLRDQGVSYQAYISQISYLLFLK----MDEERVTLIGEASMLPDGS 57

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D                  ++  L      +     + + S   +       F     
Sbjct: 58  RWD------------------NIKGLSGEALNSAYVKLLGTLSK--QGGIIGAIFLKAQN 97

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            ++    L ++             +P  V  +IYE L+ R   +V  GA  + TPR V+ 
Sbjct: 98  EIQDPAKLKRLVGLIDSETWL--GLPVDVKGDIYEGLLARNAEDVKSGAGQYFTPRAVID 155

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---- 241
               ++           P   +T++DP CGT GFL  A  H+            L     
Sbjct: 156 AMVEVV----------DPEPQQTVHDPACGTAGFLLAAWEHMKKHPRAQDKATYLALKNK 205

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G ++ PE   +    + +  +        +K+   G+        GK +   L+NPPF
Sbjct: 206 FSGVDIVPEVVRLAAMNLYLHGITGVDSIVEAKDALLGA-------GGKSYDIILTNPPF 258

Query: 302 GKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           G+K      +D   ++ E ++ +   F       S+  + FL H+   L       G AA
Sbjct: 259 GRKQSYRIVRDDGEIDNEREDYDRQDF---FVTTSNKQLNFLQHIMTVL----APDGEAA 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G AG     IRR LL N     ++ LPT +F++  +   +      K   
Sbjct: 312 VVLPDNVLFEGGAGE---TIRRRLLRNFDFHTLLRLPTGIFYKQGVKANVLFFDK-KPPS 367

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
                + +   DL T+ R   K+R ++  D     +  Y 
Sbjct: 368 DEAATRDLWIYDLRTNQRFTLKERPMVRAD-LDDFVQCYR 406


>gi|170724868|ref|YP_001758894.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908]
 gi|169810215|gb|ACA84799.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908]
          Length = 493

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/468 (19%), Positives = 174/468 (37%), Gaps = 74/468 (15%)

Query: 38  FTLLRRLECAL-------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +          +  R  + E++L    +  D +         F N   +    
Sbjct: 33  LLFLKVFDAQEEELELELDDYREPIPEQFLWRNWAA-DNQGITGEELLDFVNDELFP--- 88

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                    L++  A    N +       FS     ++   LL ++    + I+   D+ 
Sbjct: 89  --------QLKNLTAPIDKNPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSK 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  ++YE +++   S  +  A +F TPR +     A+            P +  ++ 
Sbjct: 140 ERHLFGDLYEQILKDLQSAGN--AGEFYTPRAITKFIVAVT----------DPKLGESIM 187

Query: 211 DPTCGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           DP CGTGGFL  A +HV       G  HK        G E +   H +C   M++  +E 
Sbjct: 188 DPACGTGGFLACAFDHVKTNYVKSGEDHKTLQQ-QIFGVEKKQLPHLLCTTNMMLHGIE- 245

Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +   I+ G+TL+K L +   +    ++NPPFG     ++D +EK           
Sbjct: 246 -----VPVQIKHGNTLNKPLSSWDDQVDVIITNPPFGG---TEEDGIEKNF--------- 288

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL  +   L       GRAA+VL    LF       +++I++ L E  
Sbjct: 289 PSEMQTRETADLFLQLIIEVLATK----GRAAVVLPDGTLF---GEGVKTKIKKLLTEEC 341

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  IV LP  +F   T I T +   +  +  +       +   +  + +      K + 
Sbjct: 342 NLHTIVRLPNGVFNPYTGIKTNILFFNKGQPTKD------VWFYEHPYPAGVKNYNKTKP 395

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           +  ++    L  +    +G  SR+         ++ +   +  ++ LD
Sbjct: 396 MKFEEFATELSWWGVETDGFASRV---ENEQAWKVSIDDIIARNYNLD 440


>gi|325917800|ref|ZP_08179982.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535974|gb|EGD07788.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 489

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/459 (18%), Positives = 158/459 (34%), Gaps = 66/459 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ L+          RE+       +       ++   ++    E            
Sbjct: 33  MLFLKILDD---------REQEWELIHEDYRSPLPQRLRWRNWAADPEGITGDELKNFID 83

Query: 98  NNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDR 153
            +L   +   +              F      ++   L+ ++     SG++ +       
Sbjct: 84  IDLFPELRDLTPRHSKPLGFVVRDVFQDAYNYMKSGQLIRQVLNKIQSGVDFN-KAQERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   S  +  A +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKVMDPA 190

Query: 214 CGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFLT A+ H        S  +        G E +P  H +    M++  +E     
Sbjct: 191 CGTGGFLTCAIEHKRQRYVRTSEDEAILQASIFGVEKKPLPHLLATTNMVLHGIE----- 245

Query: 271 DLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TL++       G+R    ++NPPFG     ++D +E            P 
Sbjct: 246 -VPSQIKHDNTLARPLISWGPGERVDCIVANPPFGG---MEEDGIESNF---------PA 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL    +
Sbjct: 293 AFRTRETADLFLVLIMHLLK----DGGRAAVVLPDGFLFGEGIKS---RIKEKLLTECNL 345

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKR 441
             IV LP  +F   T I T L   +     +    V             ++  +    + 
Sbjct: 346 HTIVRLPNGVFNPYTGIKTNLLFFTKGTPTK---DVWFYEHQYPAGYKSYSKTKPMRIEE 402

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
               +       D + +R+  KF+  + ++    R   +
Sbjct: 403 FATEEAWWGSEADGFAARQENKFAWKVSFKELQSRNWNL 441


>gi|254976626|ref|ZP_05273098.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-66c26]
 gi|255094011|ref|ZP_05323489.1| type I restriction modification system M subunit [Clostridium
           difficile CIP 107932]
 gi|255315762|ref|ZP_05357345.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-76w55]
 gi|255518423|ref|ZP_05386099.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-97b34]
 gi|255651541|ref|ZP_05398443.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-37x79]
 gi|260684596|ref|YP_003215881.1| type i restriction enzyme m subunit [Clostridium difficile CD196]
 gi|260688254|ref|YP_003219388.1| type i restriction enzyme m subunit [Clostridium difficile R20291]
 gi|306521356|ref|ZP_07407703.1| type I restriction enzyme M protein [Clostridium difficile
           QCD-32g58]
 gi|260210759|emb|CBA65674.1| type i restriction enzyme m subunit [Clostridium difficile CD196]
 gi|260214271|emb|CBE06583.1| type i restriction enzyme m subunit [Clostridium difficile R20291]
          Length = 487

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 187/501 (37%), Gaps = 63/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+       +      ++F     D    ++ + +S    SE           +
Sbjct: 35  LLFIKGLDEVETKNEAEATLLGVSFEKIFDDEHQHLRWSKFSNEGNSEKMYEI-----VQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I     N ++ +  +     I ++    +L KI    S +EL  D        +
Sbjct: 90  NEVFPFIKKLHGNKESAYAKY-MGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKVATAGTN--GQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  S   +   L       + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      +F   L+NPPF       K +++ E  + +L +    + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPF-------KGSLDYEAVSADLLK----VTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L++    GGR A ++    LF   +  G   IR+ +++N  +EAI
Sbjct: 296 TKKTELLFLALFLRVLKI----GGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D   
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNEIKDSDI 405

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I+  + +      R+  + S  +D          +        + ++         I 
Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVVYDAPSVIIG 465

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
             K+        L+ L+ M++
Sbjct: 466 RVKVLEKEIVDGLEELERMLE 486


>gi|158522106|ref|YP_001529976.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510932|gb|ABW67899.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 481

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/535 (18%), Positives = 176/535 (32%), Gaps = 84/535 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65
           + +AN +W     L       D+G  I   T L  L+ A E        +Y     +   
Sbjct: 2   SDVANKLWGFCHTLR--HDGIDYGDYIEQLTYLMFLKMAHEKGIDLSAVEYEDNQETVRL 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +   + FV+ +G                T+  +   + + + S     +  D  F+  + 
Sbjct: 60  DCSWQPFVEKSG----------------TDLLDAFANILRALSRQP-GLLGDI-FTQAMP 101

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R      L K+             +P  V    +E L+ +  +E  +GA  + TPR ++ 
Sbjct: 102 RFTNPVNLKKVINMIDETLWS--EMPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQ 159

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------SHHKIPPI 239
               ++                T+ DP CGT GFL  A   +                  
Sbjct: 160 SIVTVMRP------DPRKQKDFTICDPACGTAGFLMVAYEWLMAVSKGALDRKEVARIKK 213

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               GQEL P    + +  + +  LE          I  G ++ +    G+R+   L+NP
Sbjct: 214 QTYFGQELVPRPRRLALMNLFLHGLE--------PQIYLGDSIYEP-DRGERYDCILTNP 264

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG K   ++  V  +                S+  + F+ H+   L+     GGRAA+V
Sbjct: 265 PFGTK-GANQAPVRDDF-----------TVSTSNKQLNFIQHVVTILK----PGGRAAMV 308

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417
           L  + LF   AG    E+  +L+E+  +  ++ LP   F  +   +   +         E
Sbjct: 309 LPDNVLFADAAG----EVIGYLMEDCNVHTLLRLPNGTFSPYSQGVKANVIFFQKGVKTE 364

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                  I   D  T+I    KK R +      +    Y     G+  R        +++
Sbjct: 365 N------IWIYDGRTNIPGVTKKERPLTPAMFDEFEKCYGPDPVGRSRRKDQGDDGRFKK 418

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
               +     + LD          I W +   L     L     +  +      A
Sbjct: 419 FTRSQIKDRHYNLD----------IAWLRDDSLEDPANLPEPHLLAGEAITELNA 463


>gi|149203576|ref|ZP_01880545.1| N-6 DNA methylase [Roseovarius sp. TM1035]
 gi|149142693|gb|EDM30735.1| N-6 DNA methylase [Roseovarius sp. TM1035]
          Length = 495

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 161/476 (33%), Gaps = 92/476 (19%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYL 60
              + A +   +W+ A+ L G          +        L+ LE               
Sbjct: 1   MNPNTADIVAKLWREAKTLQGAGIS--IMHYVNELTYLLFLKMLEE-------------- 44

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
                           G +      YS + L      + L  Y     D           
Sbjct: 45  ---------------TGQTTLIPPAYSWTELSKAEGGDQLRYYKKLLLDLGDPEIVHNPM 89

Query: 120 ----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               F+  I  L +   L  +  N   I+    T  +  + ++YE L+++  S+    A 
Sbjct: 90  VLAIFTDAITHLREPKDLKTLTTNIDKIDWF--TAREDGLGDMYEGLMQKVMSDTKSKAG 147

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----- 230
            + TPR ++     L+           P     + DP  GTGGFL  A  ++ D      
Sbjct: 148 QYFTPRALIDSIIRLI----------QPQPGEVIQDPATGTGGFLIAADRYIKDATDDLF 197

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  +        G E  P+T  +CV  ML+  +ES    +         + +    
Sbjct: 198 KLSEDQGRFQRRQAFRGHEWVPDTRRLCVMNMLLHGIESLVGCE--------DSCAPQGE 249

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R    L+NPPF  K     +  +     GE  R GP         M FL H    L+
Sbjct: 250 ALGRADVILTNPPFN-KMPGGVNRPDFTLTAGE--RVGP---------MPFLEHAIRMLK 297

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGR AIV+  + LF    G   +E+RR+L+ N  +  I+ LPT +F+   + T +
Sbjct: 298 P----GGRCAIVMPDNILFGDGLG---TELRRFLMVNCNLHTILRLPTGIFYAQGVKTNV 350

Query: 408 WILSN--RKTEERRGKV---QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
              +    K      KV   Q +   DL T++ + G K   +      +   ++ S
Sbjct: 351 MFFTRVTDKVYPANHKVQGTQAVWFYDLRTNMPSFG-KTNALTAQHFEEFERLFGS 405


>gi|257457514|ref|ZP_05622682.1| type I restriction-modification system [Treponema vincentii ATCC
           35580]
 gi|257445137|gb|EEV20212.1| type I restriction-modification system [Treponema vincentii ATCC
           35580]
          Length = 480

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 173/522 (33%), Gaps = 75/522 (14%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +   + A     L   +W  A+ L        F   I+  T L  L+   E     + 
Sbjct: 1   MAKKQATPAKPEQALTKKVWNMADVLAAAGIG--FTDYIIQLTYLLFLKMDFEKESYGL- 57

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               +        +  V++ G       E  L  L +T+        I +          
Sbjct: 58  ---GSALPDGSKWKDIVQLDGPDQLVKYEKILEVLQATD------GLIGAI--------- 99

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F+    ++ K  LL K+            ++   +   IYE ++ + G +   GA  
Sbjct: 100 ---FTEAQNKIAKPALLKKLIGMIDEENWF--SMDGDLKGAIYESILEKNGQDKKSGAGQ 154

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR +++    ++           P +  T+ DP CGTGGFL  A +++         
Sbjct: 155 YFTPRPLINAMVDVV----------QPKITETVADPACGTGGFLLAAYDYMRKQSDEQSK 204

Query: 237 PPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              L      G ++ P    +    + +  + +D     +    + S   +         
Sbjct: 205 VEFLQTKALRGNDITPLVVTLASMNLYLHDIGADT----TPIKCEDSLEHEPEHL---VD 257

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG +     D                 +   S+  + FL H+   L+     G
Sbjct: 258 VLLANPPFGARPAGSVD---------ISTMRSDLIVTTSNNQLNFLQHIMVMLK----DG 304

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA IVL  + LF   AG     +R+ LL++  +  I+ LPT +F+   +   +      
Sbjct: 305 GRAGIVLPDNVLFADGAGEI---LRKKLLKDFNLHTILRLPTGIFYANGVKANVLFFEKG 361

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K        Q     D  T I++    + +   D     +  Y +               
Sbjct: 362 KP------TQETWYYDYRTGIKHTLATKPLKRSD-LEDFVTCYCAGHVEDRKETWSPENP 414

Query: 474 GYRRIKVLRPLRMSFILDKTGLA--RLEADITWRKLSPLHQS 513
             R  K      ++       ++  + ++D     L+ L Q+
Sbjct: 415 NGRWRKYHVNELLTRDKTSLDISWIKDDSDAVDCSLAELMQT 456


>gi|325686956|gb|EGD28980.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK72]
          Length = 534

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/522 (17%), Positives = 197/522 (37%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNIDL--------------- 69
           +  ++  +   F   + L         AV  K  Y      + D                
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAKAVDTKNIYEELVKMSPDDYRWLLEDIGTATAQL 86

Query: 70  --ESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             E F+     K    +FY   E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPEQFIETLHRKQNEDNFYEIFEATLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            I+   K   + + I    + I+             S ++E++I+ +  +      ++ T
Sbjct: 144 NISDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE      E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDQVETLLDASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYDDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKMIAFQNKLSDLFQQ 516


>gi|325990089|ref|YP_004249788.1| type I restriction-modification system, modification subunit
           [Mycoplasma suis KI3806]
 gi|323575174|emb|CBZ40836.1| Type I restriction-modification system, modification subunit
           [Mycoplasma suis]
          Length = 613

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 102/572 (17%), Positives = 197/572 (34%), Gaps = 56/572 (9%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +L + +WK  ++L      K ++F   +L    L+ ++   +  +  + E+Y    G  +
Sbjct: 3   TLEHRLWKACDNLRANSSLKESEFCMPVLGIIFLKYMDARYKKAKKKINEEYYQREGIIL 62

Query: 68  DLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE- 116
             E             + A Y++  +    +S+    +      + +    DNA  +   
Sbjct: 63  PEEEDDYKRLGVIMLPEGAQYNWILSLPEDISSKELKDVNGQPLNSLGEVLDNAMTLIAT 122

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             +    I   E   +  KI K    I  H D T  D  + +IYE+ + +F S V     
Sbjct: 123 KTEKLRGILFGEYNRIPDKILKGLLEIFDHEDITWEDDKLGSIYEYFLEQFASYVKGEEG 182

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP  +V++   +L                T+ DP CG+GG       ++        
Sbjct: 183 IFFTPPSLVNMIVNILEPTQG-----------TVLDPACGSGGMFIAIKQYMDKHN--LN 229

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G E       +C+  + I  L S     ++      S  +       +  Y 
Sbjct: 230 CNEHITFWGHEKVEHNARLCLMNIFIHHLGS---GKIAGGDDANSYYNDHWGLNGKCDYV 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLANKLELPP 350
           L+NPPF       + A          GR   GLP++S     + + L++ +  + L    
Sbjct: 287 LANPPFNIVGVNAEAA-------EAAGRLPFGLPQVSKLEIKNSNFLWISYFYSYL---- 335

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA--TYLW 408
           N  G+A  V+ S  +    +G+ + EIR  ++E   I+ ++ +    FF++       LW
Sbjct: 336 NSTGKAGFVMPSITM----SGTVDKEIRSKVVETKHIDLLINVAPK-FFKSKFKGDCCLW 390

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             + +K +E   KV  I+A++ +  +                  + +Y  +       + 
Sbjct: 391 FFNKQKPKEYENKVLFIDASNYYVPVDAGHNTWNEWQSKNLISTVQLYRGQVEKYIELIS 450

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           +Y+    +         +    D    A  E      K S    S   +  + M  +   
Sbjct: 451 EYKE---KLRNYSDKFSVLVEGDDYLKAFKEKKEQLIKDSEFELSSITNRKEKMKLKQEW 507

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                SF      + E   +  K  +      
Sbjct: 508 EEKHNSFDDAITVAKEFHWIYSKFGEGEYKDI 539


>gi|28897162|ref|NP_796767.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361456|ref|ZP_05774515.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus K5030]
 gi|260878069|ref|ZP_05890424.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260896964|ref|ZP_05905460.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|28805371|dbj|BAC58651.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088725|gb|EFO38420.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308090051|gb|EFO39746.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308111003|gb|EFO48543.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus K5030]
          Length = 496

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 162/406 (39%), Gaps = 55/406 (13%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+   D+   
Sbjct: 83  NDDLFPTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       L           P +   + DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDP 189

Query: 213 TCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CGTGGFL  + +HV +      + H+       HG E +   H +C+  M++  +E   
Sbjct: 190 ACGTGGFLACSFDHVKENYVTSAADHQTLQK-QIHGVEKKQLPHLLCITNMMLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   I+ G+TL+K L       +   +NPPFG     ++D +EK           P 
Sbjct: 246 ---VPVQIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNF---------PA 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL  +   L    +  GRA +VL    LF       +++I++ L E   +
Sbjct: 291 EMQTRETADLFLQLIVEVL----DKDGRAGVVLPDGTLF---GEGVKTKIKKMLTEECNL 343

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T +   +  +        + +   +  +        K + + 
Sbjct: 344 HTIVRLPNGVFNPYTGIKTNILFFTKGQP------TKEVWFYEHPYPEGVKNYSKTKPMK 397

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++ +Q +D + +  +G  SR     T    ++ +   +  +F LD
Sbjct: 398 FEEFQQEIDWWGNEADGFASR---TETKQAWKVSIEDIIERNFNLD 440


>gi|332975816|gb|EGK12695.1| type I restriction-modification system DNA-methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 491

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 169/465 (36%), Gaps = 68/465 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGS 93
              L+  +          +E+ L F   N       K    ++    E      L    +
Sbjct: 33  LLFLKIFDA---------QEEALEFEQENYKTPIPEKYLWRNWAADPEGITGDELLDFVN 83

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                 L++  A    N +        S     ++   LL ++    + ++ +       
Sbjct: 84  DEIFVELKNLTAPVDTNPRGFVVRQGLSDAYNYMKNGTLLRQVINKLNEVDFNRSD-ERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE L+R   S  +  A +F TPR V       +           P +   + DP 
Sbjct: 143 LFGDIYEQLLRDLQSAGN--AGEFYTPRAVTRFIVDRV----------DPKLGERIMDPA 190

Query: 214 CGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           CGTGGFL  + +HV     +    H+I    +  G E +   H +C   M++  +E    
Sbjct: 191 CGTGGFLACSFDHVKNNYVETAEDHQILQKQIL-GVEKKQLPHLLCTTNMMLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   I+  +TL+K L +        ++NPPFG     ++  +EK           P  
Sbjct: 246 --VPVQIRHDNTLNKPLSSWDSDIDVIVTNPPFGG---TEEHGIEKNF---------PAE 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL  +   L       GRAA+VL    LF       ++++++ L E   + 
Sbjct: 292 FQTRETADLFLQLIIEVL----AEKGRAAVVLPDGTLF---GEGVKTKLKKMLTEECNLH 344

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F   T I T +   +  +  +       I   +  +        K + +  
Sbjct: 345 TIVRLPNGVFNPYTGIKTNILFFTKGQPTKD------IWFYEHPYPEGVKNYSKTKPMKF 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           ++ +  +D +    +G  SR+         ++ +   +  ++ LD
Sbjct: 399 EEFQTEIDWWGDESDGFASRV---ENNHAWKVSIEEIIGRNYNLD 440


>gi|325973636|ref|YP_004250700.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
 gi|323652238|gb|ADX98320.1| type I restriction-modification system, N-6 DNA Methylase family
           protein [Mycoplasma suis str. Illinois]
          Length = 613

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 101/572 (17%), Positives = 198/572 (34%), Gaps = 56/572 (9%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +L + +WK  ++L      K ++F   +L    L+ ++   +  +  + E+Y    G  +
Sbjct: 3   TLEHRLWKACDNLRANSSLKESEFCMPVLGIIFLKYMDARYKKAKKKINEEYYQREGIIL 62

Query: 68  DLES----------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE- 116
             E             + A Y++  +    +S+    +      + +    DNA  +   
Sbjct: 63  PEEEDDYKRLGVIMLPEGAQYNWILSLPEDISSKELKDVNGQPLNSLGEVLDNAMTLIAT 122

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             +    I   E   +  KI K    I  H D T  D  + +IYE+ + +F S V     
Sbjct: 123 KTEKLRGILFGEYNRIPDKILKGLLEIFDHEDITWEDDKLGSIYEYFLEQFASYVKGEEG 182

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP  +V++   +L                T+ DP CG+GG       ++        
Sbjct: 183 IFFTPPSLVNIIVNILEPTQG-----------TVLDPACGSGGMFIAIKQYMDKHN--LN 229

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G E       +C+  + I  L S     ++      S  +       +  Y 
Sbjct: 230 CNEHITFWGHEKVEHNARLCLMNIFIHHLGS---GKIAGGDDANSYYNDHWGLNGKCDYV 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLANKLELPP 350
           L+NPPF       + A          GR   GLP++S     + + L++ +  + L    
Sbjct: 287 LANPPFNIVGVNAEAA-------EAAGRLPFGLPQVSKLEIKNANFLWISYFYSYL---- 335

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA--TYLW 408
           N  G+A  V+ S  +    +G+ + EIR  ++E   I+ ++ +    FF++       LW
Sbjct: 336 NSTGKAGFVMPSITM----SGTVDKEIRSKVVETKHIDLLINVAPK-FFKSKFKGDCCLW 390

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             + +K +E   KV  I+A++ +  +                  + +Y   +  K+  ++
Sbjct: 391 FFNKQKPQEYENKVLFIDASNYYVPVDAGHNTWNEWQSKNLISTVQLYRG-QVEKYRELI 449

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               +  +         +    D    A  +      K S    S   +  + M  +   
Sbjct: 450 S--EYKEKLRNYADKFSVLVEGDDYLKAFKDKKEQLIKDSEFELSSITNRKEKMKLKQEW 507

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                SF      + E   +  K  +      
Sbjct: 508 EEKHNSFDNAITVAKEFHWIYSKFGEGEYKDI 539


>gi|219851547|ref|YP_002465979.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
 gi|219545806|gb|ACL16256.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
          Length = 478

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/497 (17%), Positives = 163/497 (32%), Gaps = 88/497 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           + +   +W     L       D+G  I        ++                       
Sbjct: 2   SDIVQKLWGFCHTLR--HDGIDYGDYIEQITYLLFIKM---------------------- 37

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D  S     G  +      +L +   T+  ++    + +       +  D  F+  ++
Sbjct: 38  -ADERSVALPEGCDW-----KALVSRSGTDLTDHYVDLLRTLGTE-HGLLGDI-FAGALS 89

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +      L ++       E     +   V    +E L+ +  SE  +GA  + TPR V+ 
Sbjct: 90  QFTNPVNLKRLIGLIDETEWTELNI--DVKGEAFEGLLEKAASEGKKGAGQYFTPRIVIQ 147

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----- 240
                +                T+ DP CGTGGFL  +   + +      +   +     
Sbjct: 148 SIVRCMKP------DPRKRSDLTICDPACGTGGFLVCSFEWLLEQTKGGALDREVALRVK 201

Query: 241 --VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQEL      + +  + +  +E         +I+ G ++ ++   G+RF   L+N
Sbjct: 202 KGTYFGQELVARPRRLALMNLFLHNVE--------PSIKFGDSIYEN-PDGRRFDVVLTN 252

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K        E                  S+  + F+ H+   L+     GGRAA+
Sbjct: 253 PPFGTKGANQAPDRED------------FTISTSNKQLNFVQHVMTILK----PGGRAAV 296

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTE 416
           V+  + LF   AG    E+ + L+E+  +  I+ LP   F  +     T +   +     
Sbjct: 297 VVPDNVLFADAAG----EVFKVLMEDCNLHTILRLPNGTFTPYSPGTKTNVLFFTKGFPT 352

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM-LDYRTFGY 475
           E       +   D  T++    KK R +      +    Y    NG   R   D +   +
Sbjct: 353 ET------LWVYDDRTNVPGITKKDRPLTPAYFEEFERAYGVDPNGGSKRSEADSKEDRW 406

Query: 476 RRIKVLRPLRMSFILDK 492
               +      ++ +D 
Sbjct: 407 HSFPISEVKERNYKIDS 423


>gi|327490536|gb|EGF22317.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1058]
 gi|332362946|gb|EGJ40735.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK49]
          Length = 534

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/522 (17%), Positives = 199/522 (38%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNIDL--------------- 69
           +  ++  +   F   + L         AV  K  Y      ++D                
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQL 86

Query: 70  --ESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             E F+     K    +FY   E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPEQFIETLHRKQNEDNFYEIFETTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            I+   K   + + I    + I+             S ++E++I+ +  +      ++ T
Sbjct: 144 NISDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYDDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQ 516


>gi|171057995|ref|YP_001790344.1| N-6 DNA methylase [Leptothrix cholodnii SP-6]
 gi|170775440|gb|ACB33579.1| N-6 DNA methylase [Leptothrix cholodnii SP-6]
          Length = 489

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 171/477 (35%), Gaps = 73/477 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+    ALE      R+ Y +       +     D E     A  SF +   +    
Sbjct: 34  LLFLKVF-DALEEELELTRDGYKSPIPERMRWRNWAADAEGITGDALLSFVDNELFVTLK 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
             S +   N   Y+       + +FED         ++   LL ++    +GI+ +  + 
Sbjct: 93  GLSADPLRNPRGYV------VRGVFED-----AYNYMKSGQLLRQVVNKLNGIDFNRQS- 140

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                +++YE +++   S  +  A +F TPR V      ++          +P +   ++
Sbjct: 141 ERHQFNDLYEKILKDLQSAGN--AGEFYTPRAVTQFMVDMV----------NPQLGERVF 188

Query: 211 DPTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP  GTGGFL  A+ H+      +  +        G E +   H +CV  +++  +E   
Sbjct: 189 DPATGTGGFLVCAIEHLRRQVHNTEQEAQLQNSILGVEKKQLPHMLCVTNLMLHGIE--- 245

Query: 269 RRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
              +   ++  +T     +D     R    L+NPPFG            E    E G   
Sbjct: 246 ---VPSQVRHDNTLARPLRDYGAADRVDVVLTNPPFGG----------IEEPGIEQG--F 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL+ +   L+      GRAA+VL    LF       ++ I+  LL   
Sbjct: 291 PADVRTKETADLFLVLIKQLLK----HNGRAALVLPDGTLF---GEGVKTRIKEQLLAEC 343

Query: 386 LIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  IV LP  +F   T I T L   +           Q I   +  + +      K R 
Sbjct: 344 KLHTIVRLPNGVFAPYTGIKTNLLFFTKGAP------TQAIWYYEHPYPAGAKSYNKTRP 397

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           I  ++       +   E   F+  ++       ++ +      +F LD+      +A
Sbjct: 398 IRIEEFDA-EKAWWGSEADGFAARVENER--AWKVDIAVIKAANFNLDQKNPHAPDA 451


>gi|325980942|ref|YP_004293344.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
 gi|325530461|gb|ADZ25182.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
          Length = 489

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 165/493 (33%), Gaps = 75/493 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D           +++     L+  +          RE        
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQLVW-MLFLKIFDD---------RENEWELLQD 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
           +       K    ++   +E            N+L   +        + +A      F  
Sbjct: 52  DYQSPLPEKFRWRNWAADAEGMTGDALKQFLDNDLFPALQQLQAKGGDPRAYVIRSVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   L+ ++                 +  ++YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPI 239
           V       +          +P +   + DP CGTGGFL  A+ H+          +    
Sbjct: 170 VTEFMVRRV----------NPRLGEKIMDPACGTGGFLACAIEHMRKHDVKTVDDETQLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +C   M++  +      D+   I+  ++LS+        +R    +
Sbjct: 220 ASIFGIEKKPLPHLLCTTNMILHGI------DVPITIRHDNSLSRPLISWTPKERVDVVV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGRA
Sbjct: 274 TNPPFGG---MEEDGIETNF---------PSAFRTRETADLFLVLIMQLLKP----GGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+VL    LF       ++ I+  LL+   +  IV LP  +F   T I T L   S    
Sbjct: 318 ALVLPDGFLF---GEGIKTRIKEKLLQECNLHTIVRLPNGVFSPYTGIKTNLLFFSKGTP 374

Query: 416 EERRGKVQLINATDL----WTSIRNEGKKRRIINDDQRR----QILDIYVSRENGKFSRM 467
                    I   +          N+ K  +I   D          D + +RE   ++  
Sbjct: 375 TRH------IWFYEHPYPPGVKSYNKTKPMKIEEFDAEAAWWSNEADGFKNREANPYAWK 428

Query: 468 LDYRTFGYRRIKV 480
           +  +    R   +
Sbjct: 429 VSLQDIQARNYNL 441


>gi|160884785|ref|ZP_02065788.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483]
 gi|156109820|gb|EDO11565.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483]
          Length = 490

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/511 (18%), Positives = 173/511 (33%), Gaps = 66/511 (12%)

Query: 18  NAEDLW----GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESF 72
            A        G          +L    L+      +   S  ++   L       +  SF
Sbjct: 8   IANKARQILGGTLSANQCRDYVLALLFLKSASEYYKSNDSFQQDDNKLTLHLLVSERSSF 67

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
             +   +  +     L  +               +  N    FE         R  K   
Sbjct: 68  DYLCK-ALDSPDLGRLINMALYELEQANGFVTEGYEINKAIDFESNILGEANTRSSK--- 123

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  + + F  + L         + ++Y  L+  F  E  +   + + P +VV L T L+ 
Sbjct: 124 LRGLLQLFQEVRLTDAIGQLIDVGDLYNQLLYIFAEEAGKKINNVLAPTEVVSLITKLI- 182

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                   +       L DP  G+G  L +    +   G+          +GQE+    +
Sbjct: 183 --------DGNRKNACLCDPASGSGTLLIEVGKKMGIRGTD--------IYGQEVNWNLY 226

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           A+    +++   +              S    D    K+F   +S PPF  KW  +    
Sbjct: 227 ALTKMNLMLNGFKGATFL---WGDSLRSPKLLDHGGLKKFDIVVSVPPFADKWASE---- 279

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             E  +    RF  G+P  S  +  ++ H+   L       G+A +V+    LF      
Sbjct: 280 --EAYDDFYRRFKYGIPPKSQVTWAYISHILASLR----NDGQAVVVVPVGVLFRNT--- 330

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            ES+IR  ++E +L+EA++ LP++LF  T I+T + +      E  R +   ++A   + 
Sbjct: 331 -ESKIREQIIEYNLLEAVIELPSNLFHGTAISTAILVFRK---ERMRTQTLFVDARKGYI 386

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK-----------FSRMLDYRTFGYRRIKVL 481
           S +   K    ++D    Q+ +IY     G+           +    D        +KV 
Sbjct: 387 SNKGLYK----LSDKVLEQLPNIYKKFLIGEEVGGEKNGCPVYVATQDEIRHNKYDLKV- 441

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
               + ++ DK     ++     RK+  L +
Sbjct: 442 ----IKYVEDKIERKEIDVKDALRKIDELEE 468


>gi|154150574|ref|YP_001404192.1| N-6 DNA methylase [Candidatus Methanoregula boonei 6A8]
 gi|153999126|gb|ABS55549.1| N-6 DNA methylase [Methanoregula boonei 6A8]
          Length = 477

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/497 (17%), Positives = 162/497 (32%), Gaps = 88/497 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           + +   +W     L       D+G  I        ++                       
Sbjct: 2   SDVVQKLWGFCHTLR--HDGIDYGDYIEQITYLLFIKM---------------------- 37

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             D        G  +    E S      TN  ++    + +       +  D  F+  ++
Sbjct: 38  -ADERGVKLPEGCDWKTLMEKS-----GTNLSDHYVDVLRTLGQQP-GLLGDI-FAGALS 89

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R      L K+             V   V +  +E L+ +  SE  +GA  + TPR ++ 
Sbjct: 90  RFTNPVNLKKLIGLIDETAWTELNV--DVKAEAFEGLLEKAASEGKKGAGQYFTPRILIQ 147

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----- 240
                +                 + DP CGTGGFL  +   + +      +   +     
Sbjct: 148 SIVRCMKP------DPRKKADFAICDPACGTGGFLVCSYEWLLEQTKGGALDRDVAKRVL 201

Query: 241 --VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQEL      + +  + +  +E          I+ G ++ ++    +RF   L+N
Sbjct: 202 KDTYFGQELVARPRRLALMNLFLHNVE--------PVIKYGDSIYEN-PDNRRFDVVLTN 252

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K        +              +   S+  + F+ H+   L+     GGRAA+
Sbjct: 253 PPFGTKGANQAPDRDD------------FVVSTSNKQLNFVQHVMTILKP----GGRAAV 296

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTE 416
           V+  + LF  +AG    E+ + L E+  +  I+ LP   F  +     T +   +     
Sbjct: 297 VVPDNVLFADQAG----EVFKVLTEDCNLHTILRLPNGTFTPYSPGTKTNVLFFTKGFPT 352

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR-MLDYRTFGY 475
           E       I   D  T++    KK R +  +   +   +Y +  NG   R   D +   +
Sbjct: 353 ET------IWVYDDRTNVPGITKKDRPLTPEYFAEFEKVYGADPNGGSKRNAADSKEDRW 406

Query: 476 RRIKVLRPLRMSFILDK 492
               +      ++ +D 
Sbjct: 407 HSFHLSEVKERNYKIDS 423


>gi|315222635|ref|ZP_07864524.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
 gi|315188321|gb|EFU22047.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
          Length = 325

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 34/261 (13%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTGG L +A+ H+ D    +        +GQE    T A+    + +             
Sbjct: 32  GTGGMLIEAIRHIGDKQMTYG-----RIYGQENNLSTSAIARMNLFLHG-------ASDF 79

Query: 275 NIQQGSTLSKDLFTG----KRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLP 329
            + QG TL    F      ++F+  L+NPPFG+ KW  D        ++ + GR   G P
Sbjct: 80  KVAQGDTLRTPKFIEHGQLQKFNCVLANPPFGQEKWGADS------FESDKYGRNMWGCP 133

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+    +L H+   ++      G+ A+VL    LF+      E +IR  L+++DLIEA
Sbjct: 134 SDSNADFAWLQHMIKSMK---PMDGKVAVVLPQGVLFH---NGKEGDIREQLIKSDLIEA 187

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +VAL   +F+ T ++  +  L+N K  E +GKV LI+AT+++T  R     + ++ ++  
Sbjct: 188 VVALAGGVFYGTGVSACILFLNNHKRPEHKGKVCLIDATNIYTPKRA----QNLMEENDI 243

Query: 450 RQILDIYVSRENG-KFSRMLD 469
            ++  +Y   ++  +  +++ 
Sbjct: 244 NEVFKLYQEYKDVIEKCKIVS 264


>gi|302880109|ref|YP_003848673.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302582898|gb|ADL56909.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/544 (16%), Positives = 176/544 (32%), Gaps = 77/544 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D           +++     L+  +            + L     
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQLVW-MLFLKIFDDR------ESEWELLQDNYQ 54

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDFSST 123
           +   E++         N    +   L          +   + +   + +A      F   
Sbjct: 55  SPLPEAYR--WRNWAANPEGMTGEALKQFLDNEMFPALQQLEARGGDQRAYVIRSVFEGA 112

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   L+ ++                 +  ++YE L+R   +  +  A +F TPR V
Sbjct: 113 YNYMKSGQLIRQVVNKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYTPRAV 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPIL 240
                 +           +P +   + DP CGTGGFL+ ++ H+          +     
Sbjct: 171 TEFMVRMT----------NPRLGEKVMDPACGTGGFLSCSIEHIRRQDVKTVDDEAALQA 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297
              G E +P  H +C   M++  +      D+  NI+  +TL++        +R    ++
Sbjct: 221 SIFGIEKKPMPHLLCTTNMILHGI------DVPSNIRHDNTLARPLISWTPKERVDVVVT 274

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGRAA
Sbjct: 275 NPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMQLLKA----GGRAA 318

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE 416
           +VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   S     
Sbjct: 319 LVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSKGAP- 374

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---ENGKFSRMLDYRTF 473
                 Q I   +         K        +  +  D+  +    E+  F+  ++    
Sbjct: 375 -----TQHIWFYEH--PYPAGVKSYNKTKPMKIEEF-DVEAAWWGVESDGFAHRVENEQ- 425

Query: 474 GYRRIKV----LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              ++ +     R   +       G   +             QS    +   +   +   
Sbjct: 426 -AWKVSLDDIKARNYNLDCKNPHVGEQEIHDPDVLLAQYAAMQSDIAALRNQLKTILGEA 484

Query: 530 GWAE 533
              E
Sbjct: 485 LNRE 488


>gi|145589316|ref|YP_001155913.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047722|gb|ABP34349.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 490

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 94/511 (18%), Positives = 179/511 (35%), Gaps = 69/511 (13%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D           +++     L+  +   E     +++KY +    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQLVW-MLFLKIFDDR-ESEWELLQDKYKS---- 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
                   K    ++   +E            N+L   + +      + +A      F  
Sbjct: 56  ----PLPEKYRWRNWAANAEGMTGDELKQFLDNDLFPALQNLEAKGGHQRAYVIRSVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   L+ ++                 +  ++YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPI 239
           V      ++          +P +   + DP CGTGGFL+ ++ H+          +    
Sbjct: 170 VTEFMVQMV----------NPRLGEKVMDPACGTGGFLSCSIEHIRKQDVKTLEDEAQLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +C   M++  +      D+  NI+  +TL++        +R    +
Sbjct: 220 GSIFGIEKKPMPHLLCTTNMILHGI------DVPSNIRHDNTLARPLISWGPSERVDVVV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGRA
Sbjct: 274 TNPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMQMLKP----GGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   +    
Sbjct: 318 AVVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPKGVFAPYTAINTNLLFFTKGIP 374

Query: 416 EERRGKVQLI-NATDLWTSIRNEGKKRRIINDDQRRQ----ILDIYVSRENGKFSRMLDY 470
            +    V    +         N+ K  RI   +  ++        Y  R+ G++S  +  
Sbjct: 375 TK---DVWFYEHPYPEGVKSYNKTKPMRIEEFEAEKEWWGNEGGAYKGRKEGEYSWRVSI 431

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           R    R   +          +      L A 
Sbjct: 432 RDIKDRNYNLDIKNPHIVDREAEDPELLLAQ 462


>gi|239828718|ref|YP_002951341.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239809011|gb|ACS26075.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 629

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 176/483 (36%), Gaps = 73/483 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +   ++++ + L G+ +  ++  ++LP   L+ LE           ++ L          
Sbjct: 3   IEKMMFEHIDLLRGETETVNYKLILLPVYSLKFLEEKNLIPDEMRIKEILNHE------- 55

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
                                  +N  + L+       DN  A+     ++     +   
Sbjct: 56  -----------------------SNIADQLQRSFQYVEDNFHAL--KGVYTIFPENVVSN 90

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L+++    + + L          + + E L+            +  +P+ +  L   L
Sbjct: 91  RTLFQLLLKINAMTLSVKEW-----AELAEELLYHSYEWEGVRGGENYSPKSINQLGIEL 145

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L             +  T YD T G GG L  A+ +             L  +GQE++  
Sbjct: 146 L-----------NPISGTFYDGTAGFGGTLVSALEYSKQNNGE------LKLYGQEIDHT 188

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           + A+    +L+         +L +     +    D    K+F++ + + P+ +     + 
Sbjct: 189 SWALAKLNLLLHD---KLDAELIQGDALLNPAFIDGDRLKKFNFIMMDFPWVELRNHYET 245

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 K  +  RF  G+P        F+MH    L       G+A +V+    LF   A
Sbjct: 246 L-----KQDKYNRFIYGIPPRRSADFAFIMHTLASL----ESDGKAVLVVPGRTLF---A 293

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              E  IR+ L+  D+IEA++ALP  L+  T I T L IL+  K+ +R+G++  INA + 
Sbjct: 294 SGMEQSIRQNLIAADVIEAVIALPAGLYKHTGIQTNLLILNKNKSLDRKGRILFINAENE 353

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
           +     + +  +++  D   +I+  Y +  E  +FS+ +         +   + L    I
Sbjct: 354 FQ---TKQRYLKVLTKDNIDKIISTYRNGLEIEQFSKFVSSNEIEEANLFYKKYLTEKVI 410

Query: 490 LDK 492
              
Sbjct: 411 DTD 413


>gi|323481373|gb|ADX80812.1| Type I restriction-modification system methylation subunit
           [Enterococcus faecalis 62]
          Length = 343

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 136/351 (38%), Gaps = 50/351 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY------ 59
            L   ++  A++L      +++   +L     + L   L            E+Y      
Sbjct: 4   ELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLTDESLEEYDTVSKQ 63

Query: 60  -------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIA 105
                  L+   S  DL  + V + GY+      +++    +       N  N     +A
Sbjct: 64  TMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQLA 123

Query: 106 SFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           S  +    +F+D D  S     +   +   + ++ K  + +E+        V+ + YE L
Sbjct: 124 STYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGH--DGDVIGDAYEFL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + +
Sbjct: 182 ISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLN 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL
Sbjct: 236 VRNYLTH-------PDNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNLRNGDTL 283

Query: 283 SKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +KD  T +   F   + NPP+   W  D   ++ + +    G+  P   +I
Sbjct: 284 NKDWPTDEPYTFDAVVMNPPYSANWSADTTFLD-DSRFNRYGKLAPNPKQI 333


>gi|296535589|ref|ZP_06897770.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
 gi|296264105|gb|EFH10549.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
          Length = 483

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/518 (17%), Positives = 175/518 (33%), Gaps = 71/518 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            + +   L   +W  A  +      + D+ + +     L+                    
Sbjct: 1   MSDTENVLTAKVWNLAHVMNNAGVGSGDYVEQVTYLLFLK-------------------- 40

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFS 121
                 L++  +  G       E   + L + + R   + Y  +      +       ++
Sbjct: 41  ------LDTEREEDGLPSLLPEECRWARLAALSGRELAQHYARTLETLAGQPGLVGTIYT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                +E+   L+++ +           V   V   IYE L+ R  S+   GA  + TPR
Sbjct: 95  RARNTIEEPAHLHRLVRMIGAENWSGFGV--DVKGAIYESLLERTASDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-----GSHHKI 236
            V+     ++           P   +T+ DP CGT GFL  A  H+            + 
Sbjct: 153 PVIQACVEVV----------DPRPGQTICDPACGTAGFLLAAFEHMRQKPEARDRETGRR 202

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G ++      +    + +  L    R D++   +  + L+     G+R+   L
Sbjct: 203 MREEGFTGYDIVAGVARLAAMNLYLHGL---GRADVTPIHRADALLADP---GRRWDVIL 256

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPFG++        + E +        P       +  + F+ H+   L      GG 
Sbjct: 257 TNPPFGRRQSIQVFTGDGEAETEREDYQRPDFNVTTGNKQLNFVQHIMTVL----APGGV 312

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF G AG    +IRR LL+      ++ LPT +F+R  +   +     R  
Sbjct: 313 AAVVLPDNVLFEGGAGE---KIRRRLLDEFECHTLLRLPTGIFYRQGVKANVLFFEAR-P 368

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SRENGKFSRMLDY 470
             +    + +   DL T+ +    K R + D    + + +        R+  +  +   Y
Sbjct: 369 RRKTPWTEALWVYDLRTN-KRFTLKERPLRDADMAEFVSLAKLSDRAKRQETERFKRFTY 427

Query: 471 RTFGYR-----RIKVLRPLRMSFILDKTGLARLEADIT 503
                R      +  LR    +        A + A I 
Sbjct: 428 AELAAREKLDLNLTWLREDGATDPASLPPPAEIAASIA 465


>gi|188577907|ref|YP_001914836.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522359|gb|ACD60304.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 489

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 158/459 (34%), Gaps = 66/459 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ L+          RE+       +       ++   ++    E            
Sbjct: 33  MLFLKILDD---------REQEWELIHEDYRSPLPQRLRWRNWAADPEGITGDELKNFID 83

Query: 98  NNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDR 153
            +L   +   +              F      ++   L+ ++     SG++ +       
Sbjct: 84  IDLFPELRDLTPRHSKPLGFVVRDVFQDAYNYMKSGQLIRQVLNKIQSGVDFN-KAQERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   S  +  A +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKVMDPA 190

Query: 214 CGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFLT A+ H        +  +        G E +P  H +    M++  +E     
Sbjct: 191 CGTGGFLTCAIEHKRQRYVRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGIE----- 245

Query: 271 DLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TL++       G+R    ++NPPFG     ++D +E            P 
Sbjct: 246 -VPSQIKHDNTLARPLISWGPGERVDCIVANPPFGG---MEEDGIESNF---------PA 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL    +
Sbjct: 293 AFRTRETADLFLVLIMHLLK----DGGRAAVVLPDGFLFGEGIKS---RIKEKLLTECNL 345

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKR 441
             +V LP  +F   T I T L   +     +    V             ++  +    + 
Sbjct: 346 HTVVRLPNGVFNPYTGIKTNLLFFTKGTPTK---DVWFYEHQYPAGYKSYSKTKPMRVEE 402

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             + +       D + +R+  +F+  + +     R   +
Sbjct: 403 FTVEEAWWGSEADGFAARQENEFAWKVSFDELQRRNWNL 441


>gi|315612674|ref|ZP_07887586.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
 gi|315315261|gb|EFU63301.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
          Length = 534

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 181/446 (40%), Gaps = 43/446 (9%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +FY T E +L+ +      NN    + +  D A  +F++   + TI+   K   + K   
Sbjct: 103 TFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITDTISDSSKRNEVAKAII 159

Query: 139 NF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           N       +    +      S ++E++I+ +  +      ++ TP  V  +   +L+  D
Sbjct: 160 NLLARVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGND 219

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                        +YDP+ G+G  L +  + +               + Q++  ++  + 
Sbjct: 220 QPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDKTTVYSQDISQKSSNLL 264

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
                   L  +  +    NI QG+T+  +    ++  Y +SNPPF   + + +D VE  
Sbjct: 265 RL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETL 318

Query: 316 HKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            +  E  RF  G+PK    S   M         +       G+AA+VL +  +       
Sbjct: 319 PEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPDGQAAVVLPTGFITAQS--G 374

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            +  IR+ L++N ++  +V++P+++F  T     +  +  +     +  V LI+A++L T
Sbjct: 375 IDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK----NKDDVVLIDASNLGT 430

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     +   +         +D
Sbjct: 431 KVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYEDIKEKNYSLSAGQYFDIKID 490

Query: 492 KTGLARLEADITWR----KLSPLHQS 513
              +   E +        KLS L Q 
Sbjct: 491 YVDITADEFEAKMTAFQDKLSDLFQQ 516


>gi|255102190|ref|ZP_05331167.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-63q42]
          Length = 487

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/501 (17%), Positives = 185/501 (36%), Gaps = 63/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+       +      ++F     D    ++ + +S    SE           +
Sbjct: 35  LLFIKGLDEVETKNEAEATLLGVSFERIFNDEHQHLRWSKFSNEGNSEKMYEI-----VQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I     N  + +  +     I ++    +L KI    S +EL  D        +
Sbjct: 90  NEVFPFIKKLHGNKDSAYAKY-MGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKVATAGTN--GQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  S   +   L       + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      +F   L+NPPF       K +++ E  + +L +    + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPF-------KGSLDYEAVSADLLK----VTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L++    GGR A ++    LF   +  G   IR+ +++N  +EAI
Sbjct: 296 TKKTELLFLALFLRVLKI----GGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D   
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNEIKDSDI 405

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I+  + +      R+  + S  +D          +        + ++         + 
Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVVYDAPSVIMG 465

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
             K         L+ L+ M++
Sbjct: 466 RVKALEKEIVDGLEELERMLE 486


>gi|332995832|gb|AEF05887.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas sp. SN2]
          Length = 512

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 94/404 (23%), Positives = 151/404 (37%), Gaps = 54/404 (13%)

Query: 36  LPFT----LLRRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           LP       L+ L+  LE  R   AV E                  A        E    
Sbjct: 31  LPMLTWIMFLKFLDD-LEQMRETEAVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAF 89

Query: 90  TLGSTNTRNN------LESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNF 140
                  R +      L +Y+ S   +      D     F     R+    LL  +    
Sbjct: 90  INNDEAMRPDGTRGIGLFAYLRSLQGDNGGDRRDVIATVFKGMQNRMINGYLLRDVVDKI 149

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +GI  +  +     +S +YE ++R       +   +F TPR VV     ++         
Sbjct: 150 NGIHFN-SSEEMHTLSRLYETMLREMRDAAGDS-GEFYTPRPVVRFMVEVM--------- 198

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVA 257
             P +  ++ DP CGTGGFL +A  H+          ++       G E +   + +   
Sbjct: 199 -DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM 257

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L+  LE  PR D   +++      +++    R    L+NPPFG            E +
Sbjct: 258 NLLLHGLEY-PRIDPENSLRFP---LREMGDKDRVDVILTNPPFGG-----------EEE 302

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGE 374
            G LG F P   + ++ +MLFL  +  KL+ P +G   GGRAA+V+ +  LF+    +  
Sbjct: 303 KGILGNF-PEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISA-- 359

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
             I+  LL+N  +  IV LP  +F   T+I   +         E
Sbjct: 360 -RIKEELLKNFNLHTIVRLPEGVFAPYTDIPANVLFFDRSAPTE 402


>gi|255308059|ref|ZP_05352230.1| type I restriction modification system M subunit [Clostridium
           difficile ATCC 43255]
          Length = 487

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/501 (17%), Positives = 186/501 (37%), Gaps = 63/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+       +      ++F     D    ++ + +S    SE           +
Sbjct: 35  LLFIKGLDEVETKNEAEATLLGVSFERIFDDGHQHLRWSKFSNEGNSEKMYEI-----VQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I     N  + +  +     I ++    +L KI    S +EL  D        +
Sbjct: 90  NEVFPFIKKLHGNKDSAYAKY-MGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKVATAGTN--GQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  S   +   L       + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      +F   L+NPPF       K +++ E  + +L +    + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPF-------KGSLDYEAVSADLLK----VTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L++    GGR A ++    LF   +  G   IR+ +++N  +EAI
Sbjct: 296 TKKTELLFLALFLRVLKI----GGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D   
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNEIKDSDI 405

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I+  + +      R+  + S  +D          +        + ++         + 
Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVIYDAPNVILG 465

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
             K      +  L+ L+ M++
Sbjct: 466 RVKELEKEIAVGLEELERMLE 486


>gi|332141624|ref|YP_004427362.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143450|ref|YP_004429188.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551646|gb|AEA98364.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553472|gb|AEB00191.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 713

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 98/472 (20%), Positives = 169/472 (35%), Gaps = 66/472 (13%)

Query: 36  LPFT----LLRRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           LP       L+ L+  LE  R   AV E                  A        E    
Sbjct: 41  LPMLTWIMFLKFLDD-LEQMRETEAVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAF 99

Query: 90  TLGSTNTRNN------LESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNF 140
                  R +      L +Y+ S   +      D     F     R+    LL  +    
Sbjct: 100 INNDEAMRPDGTRGIGLFAYLRSLQGDNGGDRRDVIATVFKGMQNRMINGYLLRDVVDKI 159

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +GI  +  +     +S +YE ++R       +   +F TPR VV     ++         
Sbjct: 160 NGIHFN-SSEEMHTLSRLYETMLREMRDAAGDS-GEFYTPRPVVRFMVEVM--------- 208

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVA 257
             P +  ++ DP CGTGGFL +A  H+          ++       G E +   + +   
Sbjct: 209 -DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM 267

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L+  LE  PR D   +++      +++    R    LSNPPFG            E +
Sbjct: 268 NLLLHGLEY-PRIDPENSLRFP---LREMGDKDRVDVILSNPPFGG-----------EEE 312

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGE 374
            G LG F P   + ++   LFL  +  KL+   NG   GGRAA+V+  S L++G      
Sbjct: 313 KGILGNF-PEDMQTAETVQLFLQLIMRKLKRKGNGSVTGGRAAVVVPESVLYDGGVA--- 368

Query: 375 SEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +R+ LL +  +  I+ LP  +F   ++I + +         +R G  + +        
Sbjct: 369 QRVRKQLLSDFNLHTIIRLPKGVFEPYSDIQSNILFF------DRNGPTKGVWFYQHEVP 422

Query: 434 IRNEGKKR------RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +   G K         + +++  +I   Y S    +++  +       +   
Sbjct: 423 VERRGMKNPCYTVTNALKEEEMAEIRTWYESPCESEYAWFVPSEDIRSKDFS 474


>gi|327459321|gb|EGF05667.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1]
          Length = 534

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/522 (17%), Positives = 199/522 (38%), Gaps = 68/522 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFGGSNIDL--------------- 69
           +  ++  +   F   + L         AV  K  Y      ++D                
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQL 86

Query: 70  --ESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             E F+     K    +FY   E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPEQFIETLHRKQNEDNFYEIFETTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            I+   K   + + I    + I+             S ++E++I+ +  +      ++ T
Sbjct: 144 NISDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDRVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ ++    FS  + Y     
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSSEEEQKIVETFIKKKAVDDFSVTVSYEDIKE 474

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
           +   +         +D   +   E +        KLS L Q 
Sbjct: 475 KNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQ 516


>gi|291527177|emb|CBK92763.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 486

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 185/501 (36%), Gaps = 64/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+          +E    F G + +     +   Y +        +        
Sbjct: 35  LLFIKQLDEV-----ETTKENEANFLGVDYESMFPGECQKYRWSKFKNLGSAEEMYELVL 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   +  + +  +     I ++  A +L KI      +EL      +    +
Sbjct: 90  NGVFPFIKNLHQDGDSAYARY-MGDAIFKIPTAAMLSKIVDGIDKLELG----DEDSKGD 144

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P    T+ DP  G+ 
Sbjct: 145 LYEYLLSKVATAGTN--GQFRTPRHIIKMMVELV----------KPAPDDTIIDPAMGSA 192

Query: 218 GFLTDAMNHVADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL +A +++ +      +           + +G +++     +    ML+  +E     
Sbjct: 193 GFLIEAQSYLRENHPELFLHQESLQHFNNTMFYGNDMDRTMLRIGAMNMLLHGVE----- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI    +LS+     +++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 248 --NPNISYRDSLSEQNTDVEKYSLVLANPPF-------KGSLDYEAVSADLLK----VTK 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGRAA+++    LF   +     +IR+ ++EN+ ++A+
Sbjct: 295 TKKTELLFLALFLRILK----KGGRAAVIVPDGVLF--GSSKAHKQIRKEIIENNKLDAV 348

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   + +   KV      D+     +   KR+ I D+  
Sbjct: 349 ISMPSGVFKPYAGVSTAILIFTKTGSSD-TDKVWF---YDMKADGLSLDDKRQEIADNDI 404

Query: 450 RQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ +        R+    S  +           +        + +       +  I 
Sbjct: 405 PDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNNYDLSINKYKEIVYEAVQYEPTDVIIG 464

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
                       L  LK ++ 
Sbjct: 465 KIDALESEIQGELAELKKLLD 485


>gi|145631522|ref|ZP_01787290.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982867|gb|EDJ90384.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 283

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 30/282 (10%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K+    I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKDQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            N +      S  +    +   G+E   ET+A+C + M+I+R
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKR 283


>gi|254415510|ref|ZP_05029270.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177691|gb|EDX72695.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 513

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 119/531 (22%), Positives = 196/531 (36%), Gaps = 77/531 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRL---ECALEPTRSAVREKY- 59
           S   L N IW+  + L  D       + +  L     L+ L   E A E    +   KY 
Sbjct: 2   SREQLTNDIWRACDILRRDNNCGGVMEYVEHLSWLLFLKFLDGQEDAFEQEAKSANRKYT 61

Query: 60  ----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAI 114
                 +  SN   ++  K  G     T             R  L  ++AS S +  + +
Sbjct: 62  RVISRQYRWSNWVTKALGKKGGKKGRRTIPAWDDHQLMEFVRGELIPHLASLSGSPEREV 121

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                    +   +    L  + K    I+L +PD +    +S+IYE L++R GS  ++ 
Sbjct: 122 IAGIFRDRNVIICDSPDNLKDVLKIVDQIDLTNPDDI--YTVSHIYEDLLKRLGS-ENKM 178

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TPR V+     ++           P +  T+YDP CGT GFL +A  H       
Sbjct: 179 AGEFYTPRSVIRFMVEVI----------DPQIGETVYDPACGTCGFLLEAFLHTQKQEKT 228

Query: 234 HKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            K   IL  H   GQE +P    +    M++  +     R   +N              +
Sbjct: 229 AKDREILQRHTFVGQEKKPLPALLGTMNMVLHGVLVPDIR--RRNTLAEDIRDGSGLFDE 286

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L+NPPFG K            +N  + +  P   K +   +LFL H+  KL+  P
Sbjct: 287 TFDVILTNPPFGGK------------ENARIQKNFP--VKANATELLFLQHVMKKLK--P 330

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWI 409
             G R  IV+    LF G A    + +++ LL +  +  +V+LP   F   +++   L  
Sbjct: 331 KQGARCGIVVPEGTLFRGGA---FATVKKELLHDFNLFMVVSLPPGTFAPYSDVKAALLF 387

Query: 410 LSNRKTEERRGKVQLINATDLWTSIR-----NEGKKRRIINDDQRRQILDIYVSRENGKF 464
                  E++ +V        +  I       +  K   I+D+   +   ++   +    
Sbjct: 388 FERG---EQQKEVL-------YQEIALPDDLKKFSKVNSISDEHFAEARQVWQQMK---- 433

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
               DY      R  +      S++ D  GL + E D T +    L +   
Sbjct: 434 ----DYHLGKANRPTMTAN---SWLEDVKGLVKNEYDFTAKNSIYLKKEKL 477


>gi|261401230|ref|ZP_05987355.1| type I restriction enzyme M protein [Neisseria lactamica ATCC
           23970]
 gi|269208818|gb|EEZ75273.1| type I restriction enzyme M protein [Neisseria lactamica ATCC
           23970]
          Length = 533

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 94/529 (17%), Positives = 193/529 (36%), Gaps = 59/529 (11%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE  FT    +L + +              +F  +I    L + L    +     +R++
Sbjct: 1   MTEQHFTEQTKALIDSLKTICAHCGLGNDGNEFK-IISQAFLYKFLNDKYDFEVKQIRKE 59

Query: 59  Y----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDN 110
                + F   +I+ ++ V    +S    SE       + L      +        FS  
Sbjct: 60  KPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNAELFSVK 119

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIRR 165
            +   +   F      +   G             +G              + I+E+LI+ 
Sbjct: 120 TEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIKD 179

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  +
Sbjct: 180 YNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVAH 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +         I     Q+         +   L+  L          N+ QG+T+   
Sbjct: 236 AIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILSP 282

Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS----- 335
                    K+F + +SNPPF   +   +D +E E       RF  G+PKI         
Sbjct: 283 AHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKME 339

Query: 336 --MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LF+ H+   L+      G+AAIVL +  +        + +IR +L+EN ++  +V++
Sbjct: 340 IYQLFIQHILFSLK----ENGKAAIVLPTGFITAQS--GIDKKIREYLVENKMLAGVVSM 393

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+++F  T     +  +        +  V LI+A+ L   I++   ++ +++ ++ ++I 
Sbjct: 394 PSNIFATTGTNVSILFIDK----ANKDNVVLIDASGLGKKIKDGKNQKTVLSREEEQKIC 449

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           + +  ++    FS ++ Y     +   +         +D   ++  E +
Sbjct: 450 NTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFE 498


>gi|294782728|ref|ZP_06748054.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481369|gb|EFG29144.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
          Length = 545

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/548 (15%), Positives = 195/548 (35%), Gaps = 70/548 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + +          + E+        I   +  +       +    
Sbjct: 28  DGNEYK-IITQVFLYKFINDKFGYEIKKINEELKNAEKWEILYSNMNEEDRLYLLDELSA 86

Query: 87  SLSTLGSTNTRNNLES----------------YIASFSDNAKAI----------FED--F 118
            +  L   +  +NL +                 IA  +++  A           FE    
Sbjct: 87  DVPLLEPQHLISNLWNQQSKGDFALIFDQTMVDIAQKNEDIFATQTTLNTKIPIFEKLTI 146

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +    R   A  L     NFS  E+  +       + I+E+LI+ + +       ++ 
Sbjct: 147 YVTDENERSNFARALVDKLVNFSFEEVFGEHY--DFFAAIFEYLIKDYNTNGGGKYAEYY 204

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ +  +   LL+                 YDP+ GTG  +    + + +         
Sbjct: 205 TPQSIATIMARLLVGNKKDYHSVE------CYDPSAGTGTLVMALSHQIGE--------D 250

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLS 297
                 Q++   ++ +    +++  L S     +  +        S +    + F + +S
Sbjct: 251 KCTIFTQDISQRSNKMLKLNLILNGLVSSLDHAIQGDTLVYPYHKSDNGEDLRTFDFVVS 310

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELPP 350
           NPPF   + ++++ +          RF  G+P I            LF+ H+ N L+   
Sbjct: 311 NPPFKMDFSENREKIAAMP-----ARFWAGVPNIPAKKKESMAIYTLFIQHVINSLK--- 362

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G+ AIV+ +  +        E +I   ++E+ ++   V++P+++F  T     +   
Sbjct: 363 SKTGKGAIVIPTGFITAKS--GVEKKILEKIVESKIVYGCVSMPSNVFANTGTNVSVLFF 420

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
            N K  +   KV LI+A+ L    ++   K+R + ++    I++ +  ++N   FS  + 
Sbjct: 421 DNAKNHD---KVILIDASKLGEDYQDGKNKKRRLREEDIELIINTFNDKKNVDDFSIAVS 477

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMMQQI 526
           Y     ++  +         ++   +   E +   ++     Q ++ +   + K +M+Q+
Sbjct: 478 YEEIKEKKYSLSAGQYFDIKIEYIDMTPEEFEAKMKEYQKELQEYFEEGEKLQKEIMEQL 537

Query: 527 YPYGWAES 534
               + + 
Sbjct: 538 GKIKYEQD 545


>gi|189423705|ref|YP_001950882.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189419964|gb|ACD94362.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 545

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 189/542 (34%), Gaps = 60/542 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              +F  +I    L + L          +  K          + +    A          
Sbjct: 29  DGNEFK-IITQVFLYKFLNDKFAFEAKRINPKLAKAENWEQAISTLQPDALEMLQLQMGA 87

Query: 87  SLSTLGSTN------TRNNLESYIASFSDNAKAI-FEDFDFSSTIARLEKAGLLYKICKN 139
             + L   +      +R N   +   F D  + I   + D  +          L+     
Sbjct: 88  DTARLKPEHFVAHLFSRQNAPEFAKLFDDTLRDIAVSNNDIFAVKTDGGTKVTLFDRVSE 147

Query: 140 FSG----------------IELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           F                  +E   + +        + ++E+LI+ +  +      ++ TP
Sbjct: 148 FITDVSKRDAFCRAVINKLVEFSFERIFTQKYDFYAALFEYLIKDYNKDSGGKYAEYYTP 207

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +  A+L+  +            + YDP+ G+G  L +  + + +         I 
Sbjct: 208 HAVAKIMAAILVPEEQR----GTVKNVSCYDPSAGSGTLLMNLAHAIGEQRCAIFSQDIS 263

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
               Q+         +   L+  +          NI QG+TL+          K+F Y +
Sbjct: 264 ----QKSSSLLRLNLILNNLVHSI---------PNIIQGNTLTHPYHRNGKALKKFDYIV 310

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ ++            P +PK +   M         +      GGRA
Sbjct: 311 SNPPFKMDFSDFRNELDATEHQERFFAGVPNIPKQAVEKMAIYQLFLQHIIYSLKPGGRA 370

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+ +  +        + +IR  L++  ++  +V++P+++F  T     +  +      
Sbjct: 371 AVVVPTGFITAQS--GIDRKIREKLVDERMLAGVVSMPSNIFATTGTNVSILFID----A 424

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
             + KV LI+A+ L T +++   ++ ++++++  +I+  + SR+    FS +++Y+    
Sbjct: 425 SNKDKVVLIDASSLGTKVKDGKNQKTLLSEEEEDRIIATFNSRQAVEDFSVVVEYQEIVA 484

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYPYGW 531
           +   +         ++   L   +     +     L  L +     + K + +Q+    +
Sbjct: 485 KNYSLSAGQYFEVKIEYVDLTPQQFSAKMQGFTENLDKLFKESG-QLEKEIRKQLAGLKY 543

Query: 532 AE 533
           AE
Sbjct: 544 AE 545


>gi|283786953|ref|YP_003366818.1| type I restriction modification system HsdM component [Citrobacter
           rodentium ICC168]
 gi|282950407|emb|CBG90057.1| putative type I restriction modification system HsdM component
           [Citrobacter rodentium ICC168]
          Length = 500

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 109/557 (19%), Positives = 202/557 (36%), Gaps = 69/557 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+ F  S   + N +W  A  L  D      G  +   T L  L+   E       +  +
Sbjct: 1   MSNF--SVTDIVNRVWGYANILRDDGISN--GDYVEQLTFLIFLKMNAERVSLGKLKGNI 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                +      +K++G S        +S LG +                 + + E   F
Sbjct: 57  VSDAWD----ELLKLSGESLLTKYSKIISQLGES-----------------EGLLETI-F 94

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                +++ AG L K+    +            V   IYE ++++      +GA  + TP
Sbjct: 95  YGAQNKIQDAGKLKKLILMINEEVWLSSNF--DVKGAIYEGILQKSADTEKKGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHK 235
           R ++      +           P  ++T+ DP CGTGGFLT A +++      +    H 
Sbjct: 153 RALIEAIVEAV----------DPEPMQTIADPACGTGGFLTVAHDYIFNKIDKNEVDKHS 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G E+      +C   + +  +                + + +    K+    
Sbjct: 203 FLRNSTFSGNEISSSVARLCAMNLYLHEIGIYSNPISV-------SDALESKPSKKVDIV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG+K     + ++K   + +  R      + ++  + FL H+ N L+      G+
Sbjct: 256 LANPPFGRKSTFTIN-IDKSKIDNKYIR-DDFWVETTNKQLNFLQHICNMLK----KDGK 309

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--R 413
           AA+V   + LF+  AG    +IRR LL+   +  ++ LPT +F+   +   +    N   
Sbjct: 310 AAVVFPDNILFDSGAGE---KIRRKLLDEYNLHTVLRLPTGIFYAQGVKANVLFFDNCID 366

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K   R  KV      DL TSI    K  ++I  D    I    + ++    SR     + 
Sbjct: 367 KKRPRTEKVWF---YDLRTSIHKTFKHNKLIRSDFNEFIA---LYKKENIESRK-STWST 419

Query: 474 GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +         +F  ++  L  +   DI W K    +QS  ++    ++  I     +
Sbjct: 420 DVTKYSTPNGRWRAFSYEEILLRDKANLDIQWLKEDVFNQSENIESSPVLVDSIIELLSS 479

Query: 533 ESFVKESIKSNEAKTLK 549
                  +++  + + K
Sbjct: 480 ALDDFREVEALLSNSQK 496


>gi|53729078|ref|ZP_00348313.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126208662|ref|YP_001053887.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|126097454|gb|ABN74282.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 550

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 87/585 (14%), Positives = 208/585 (35%), Gaps = 78/585 (13%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR- 56
           MTE  F      L + +    A    G+    +F  +I    L + L          ++ 
Sbjct: 1   MTEQLFQQKTKELIDSLKAICANYGLGN-DGNEFK-IITQVFLYKFLNDKFAFEIKQIKP 58

Query: 57  ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
                    +        + D  +       +    +++       +N  N    +  + 
Sbjct: 59  SLAEHDSWEQALGEMSAEDFDFLTMNMNGDTAILRPNQFISHLFNQSNIANFANLFDETL 118

Query: 108 SDNAKAIFE----------DFDFSSTIARLEKAGLLYK-----ICKNFSGIEL-HPDTVP 151
            D A    +            +    +++              +          H     
Sbjct: 119 MDIAAQNADIFSVKTEGGAKINLFDRVSQYIADPSKRDAFCRAVINKLVEFSFEHIFNQK 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               + I+E+LI+ + +       ++ TP  V  +  A+L+  +     ++     + YD
Sbjct: 179 FDFYATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILVPENVRGQLQNV----SCYD 234

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ G+G  L +  + + +             + Q++  ++  +         L  +    
Sbjct: 235 PSAGSGTLLMNIAHAIGE--------KKCTIYTQDISQKSSNLLRL-----NLILNNLVA 281

Query: 272 LSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              N+ QG+T++          ++F Y +SNPPF   + + ++ +    +     RF  G
Sbjct: 282 SIPNVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREEL---AETAHKARFFAG 338

Query: 328 LPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +P +           +LF+ H+ + L+      G+AA+VL +   F       + +IR +
Sbjct: 339 VPNVPKAKKEGMKIYLLFVQHIIHSLKA----DGKAAVVLPTG--FITDQSKIDKKIREF 392

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+   ++  +V++P+++F  T     +  L     E     V LI+A++L   I+    +
Sbjct: 393 LVNEKMLAGVVSMPSNIFATTGTNVSILFLDRANQE----NVVLIDASNLGEKIKEGKNQ 448

Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + +++ ++ ++I+D++  ++    FS ++ Y     +   +          D   +   E
Sbjct: 449 KTVLSAEEEQRIIDVFNQKKAEEDFSVVVSYANIEAKNYSLSAGQYFDVKTDHIDITAAE 508

Query: 500 ADITWRKLSPLHQS--FWLDILKPMMQQIYPYGWAESFVKESIKS 542
            +   +K++   Q+        K +  QI        F  + +++
Sbjct: 509 FE---QKMADFQQNLTALFAESKALESQIQQQMATLKFNAQVVEN 550


>gi|161870101|ref|YP_001599271.1| hypothetical protein NMCC_1140 [Neisseria meningitidis 053442]
 gi|161595654|gb|ABX73314.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 533

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 102/565 (18%), Positives = 203/565 (35%), Gaps = 62/565 (10%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALE----PTRS 53
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +      R 
Sbjct: 1   MTEQHFTEQTKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
              ++ + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  ENPDEPIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E E       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +  +        + +IR  L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLK----ENGKAAIVLPTGFITAQS--GIDKKIREHLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDKVVLIDASGLGEKIKDGKNQKTVLSREEEQKI 448

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            + +  ++    FS ++ Y     +   +         +D   ++  E        S   
Sbjct: 449 CNTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFKQRMAGFSADL 508

Query: 512 QSFWLDILKPMMQQIYPYGWAESFV 536
              + +  K + ++I        F 
Sbjct: 509 DKLFAESAK-LEKEIKDRLAMLKFN 532


>gi|291526086|emb|CBK91673.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale DSM 17629]
          Length = 486

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 185/501 (36%), Gaps = 64/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+          +E    F G + +     +   Y +        +        
Sbjct: 35  LLFIKQLDEV-----ETTKENEANFLGVDYESMFPGECQKYRWSKFKNLGSAEEMYELVL 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   +  + +  +     I ++  A +L KI      +EL      +    +
Sbjct: 90  NGVFPFIKNLHQDGDSAYARY-MGDAIFKIPTAAMLSKIVDGIDKLELG----DEDSKGD 144

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P    T+ DP  G+ 
Sbjct: 145 LYEYLLSKVATAGTN--GQFRTPRHIIKMMVELV----------KPSPDDTIIDPAMGSA 192

Query: 218 GFLTDAMNHVADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL +A +++ +      +           + +G +++     +    ML+  +E     
Sbjct: 193 GFLIEAQSYLRENHPELFLHKESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHGVE----- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI    +LS+     +++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 248 --NPNISYRDSLSEQNTDVEKYSLVLANPPF-------KGSLDYEAVSADLLK----VTK 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGRAA+++    LF   +     +IR+ ++EN+ ++A+
Sbjct: 295 TKKTELLFLALFLRILK----KGGRAAVIVPDGVLF--GSSKAHKQIRKEIIENNKLDAV 348

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   + +   KV      D+     +   KR+ I D+  
Sbjct: 349 ISMPSGVFKPYAGVSTAILIFTKTGSSD-TDKVWF---YDMKADGLSLDDKRQEIADNDI 404

Query: 450 RQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ +        R+    S  +           +        + +       +  I 
Sbjct: 405 PDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNNYDLSINKYKEIVYEAVQYEPTDVIIG 464

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
                       L  LK ++ 
Sbjct: 465 KIDALESEIQGELAELKKLLD 485


>gi|293398988|ref|ZP_06643153.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62]
 gi|291610402|gb|EFF39512.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62]
          Length = 533

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 187/522 (35%), Gaps = 47/522 (9%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                     K+F + +SNPPF   +   +D +E +          P +       M   
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRERFFAGIPKIKAKDKDKMEIY 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F 
Sbjct: 342 QLFIQHILFSLKENGKAAIVLPTGFITAQS--DIDKKIREYLVENKMLAGVVSMPSNIFA 399

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + ++
Sbjct: 400 TTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNK 455

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    FS ++ Y     +   +         +D   ++  E 
Sbjct: 456 QAVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|262280000|ref|ZP_06057785.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262260351|gb|EEY79084.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 491

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 95/481 (19%), Positives = 178/481 (37%), Gaps = 64/481 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ ++      R           G         K    ++    E            
Sbjct: 33  MLFLKVVDD-----RENELATLALLEGQTFKSPIPEKFRWRNWAANDEGMTGDELKDFID 87

Query: 98  NNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L   + +    +D+ +A      FS     ++  GL+ KI            +     
Sbjct: 88  NELFPALQNLAVENDDPRARVVQNVFSDAYNYMKSGGLIRKIINQIQKGFDFNKSKERHA 147

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE L+R    + ++ + +F TPR V      ++           P +  ++ DP C
Sbjct: 148 FGDIYEQLLRDL--QAAKNSGEFYTPRAVTTFMAQIV----------DPQLGESVLDPAC 195

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFLT A+ H  +          +     +G E +P  H +C   M++  +      D
Sbjct: 196 GTGGFLTSAIEHKRENYVQTAEDEKILQNSIYGIEKKPLPHLLCTTNMILHGI------D 249

Query: 272 LSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I++ +TLS       T KR    L+NPPFG     ++  +EK           P  
Sbjct: 250 VPVQIRRDNTLSYPLISWGTDKRVDVVLTNPPFGG---TEEQGIEKNF---------PSK 297

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LF++ +   L+      GRAA+VL    +F       ++ I+  L+E+  + 
Sbjct: 298 FQTRETADLFMVLIIQLLKA----HGRAAVVLPDGFMF---GEGIKTAIKEKLMEDCNLH 350

Query: 389 AIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            IV LP  +F   T+I+T +   +  K  E       +   +    +    K        
Sbjct: 351 TIVRLPKSVFAPYTSISTNILFFTKGKKTEH------VWFYEH--QLPQGVKAYNKTKPL 402

Query: 448 QRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           Q ++   L  +  +E+  F+  ++ +     ++ +   +  ++ LD     ++E DI   
Sbjct: 403 QLKEFDTLKSWWGKESDGFASRIENQQ--AWKVSLQDIIDRNYNLDIKNPHQVEEDIKDP 460

Query: 506 K 506
           K
Sbjct: 461 K 461


>gi|240080598|ref|ZP_04725141.1| hypothetical protein NgonF_04687 [Neisseria gonorrhoeae FA19]
 gi|240118085|ref|ZP_04732147.1| hypothetical protein NgonPID_06446 [Neisseria gonorrhoeae PID1]
 gi|240123639|ref|ZP_04736595.1| hypothetical protein NgonP_06824 [Neisseria gonorrhoeae PID332]
 gi|268596723|ref|ZP_06130890.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19]
 gi|268603800|ref|ZP_06137967.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268682268|ref|ZP_06149130.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268550511|gb|EEZ45530.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19]
 gi|268587931|gb|EEZ52607.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268622552|gb|EEZ54952.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
          Length = 533

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 89/522 (17%), Positives = 186/522 (35%), Gaps = 47/522 (9%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALE----PTRS 53
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +      R 
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
              ++ + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  ENPDEAIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                     K+F + +SNPPF   +   +D +E +          P +       M   
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRERFFAGIPKIKAKDKDKMEIY 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F 
Sbjct: 342 QLFIQHILFSLKENGKAAIVLPTGFITAQS--DIDKKIREYLVENKMLAGVVSMPSNIFA 399

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + ++
Sbjct: 400 TTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNK 455

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    FS ++ Y     +   +         +D   ++  E 
Sbjct: 456 QAVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|167851733|ref|ZP_02477241.1| N-6 DNA methylase [Burkholderia pseudomallei B7210]
          Length = 489

 Score =  189 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 158/460 (34%), Gaps = 71/460 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  +   G+              +       +  +   +D+     +D D     
Sbjct: 41  DDQETELELMHDGFRSPLPDRLRWRNWAADPEGITGDELLTFINDDLFPTLKDLDADQQR 100

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++    + ++ +  +      +++YE +++   S 
Sbjct: 101 NARGFVVREVFGDAYNYMKSGQLLRQVVNRINEVDFNSQS-ERHQFNDLYEKILKDLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A +F TPR V       +          +P +   + DP CGTGGFL  A+ H+  
Sbjct: 160 GN--AGEFYTPRAVTQFMVDQV----------NPRLGERVLDPACGTGGFLACAIEHLKA 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLE--SDPRRDLSKNIQQGSTLSKD 285
              H +   +L     G E +   H +CV  ML+  ++  S  R D + +       ++D
Sbjct: 208 QRKHVEDDAVLQNSIFGVEKKQLPHLLCVTNMLLHGIQVPSLIRHDNTLSRPLVDYSNRD 267

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +         L+NPPFG   E   +               P   +  + + LFL+ +   
Sbjct: 268 M-----MDVILTNPPFGGTEEPGIE------------NNFPADVRTRETADLFLVLIIEL 310

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+      GRAA+VL    LF     S    I+  LL    +  IV LP  +F   T I 
Sbjct: 311 LK----PNGRAAVVLPDGTLFGEGVKS---RIKERLLAECNLHTIVRLPNGVFAPYTGIK 363

Query: 405 TYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQIL--DIYVSREN 461
           T L   +             I   +  + +      K + I      + +    +   E 
Sbjct: 364 TNLLFFTKGTPTRD------IWYYEHPYPAGYKSYSKTKPIR---IEEFVPEKAWWGCEE 414

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             F+  ++       ++ V       + LD+    R E +
Sbjct: 415 DGFASRVESEF--AWKVSVDALKASGYNLDQKNPHRAEEE 452


>gi|37678450|ref|NP_933059.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37197190|dbj|BAC93030.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 530

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 102/447 (22%), Positives = 168/447 (37%), Gaps = 61/447 (13%)

Query: 36  LPFT----LLRRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           LP       L+ L+  LE  R   AV E                  A        E    
Sbjct: 46  LPMLTWIMFLKFLDD-LEQMRETEAVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAF 104

Query: 90  TLGSTNTRNN------LESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNF 140
                  R +      L +Y+ S   +      D     F     R+    LL  +    
Sbjct: 105 INNDEAMRPDGTRGIGLFAYLRSLQGDNGGDRRDVIATVFKGMQNRMINGYLLRDVVDKI 164

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +GI  +  +     +S +YE ++R       +   +F TPR VV     ++         
Sbjct: 165 NGIHFN-SSEEMHTLSRLYETMLREMRDAAGDS-GEFYTPRPVVRFMVEVM--------- 213

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVA 257
             P +  ++ DP CGTGGFL +A  H+          ++       G E +   + +   
Sbjct: 214 -DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM 272

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L+  LE  PR D   +++      +++    R    L+NPPFG            E +
Sbjct: 273 NLLLHGLEY-PRIDPENSLRFP---LREMGDKDRVDVILTNPPFGG-----------EEE 317

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGE 374
            G LG F P   + ++ +MLFL  +  KL+ P +G   GGRAA+V+ +  LF+    +  
Sbjct: 318 KGILGNF-PEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISA-- 374

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             I+  LL+N  +  IV LP  +F   T+IA  L         +R G    I    +   
Sbjct: 375 -RIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFF------DRSGPTDDIWYYQITVP 427

Query: 434 I-RNEGKKRRIINDDQRRQILDIYVSR 459
             R +  K + +   +  + L+ + +R
Sbjct: 428 EGRKKYTKTKPMESHEFDECLNWWSNR 454


>gi|318042339|ref|ZP_07974295.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Synechococcus sp. CB0101]
          Length = 570

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 152/456 (33%), Gaps = 75/456 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L   LE  R+A     +A            +   ++ +   + +   L      
Sbjct: 114 LLFLKYL-DGLEDDRAA-----MALLEGRSYTPILEEPYRWNSWAAPKNADGQLDHNASL 167

Query: 96  --------TRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                       L  Y+  F       +  +    +  F     ++     L +I     
Sbjct: 168 TGDDLRDFVNQRLFPYLEQFKQRASGPNTIEYKIGEI-FGEIRNKISSGYNLREIIDVID 226

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           G+           +S +YE  I+R G+       ++ TPR ++     ++          
Sbjct: 227 GLRFR-SQAEKHELSMLYEEKIKRMGN-AGRNGGEYYTPRPLIRAIVQVI---------- 274

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHA 253
           +P +  T+YDP  G+ GFL +A  ++   G+  +                G+E +   + 
Sbjct: 275 NPQIGETVYDPAVGSAGFLCEAFEYMRKGGASGRELSTEDLDTLQTRTFTGKEKKSLAYV 334

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +  M++  +E+      +   +       D+    RF   L+NPPFG           
Sbjct: 335 IAIMNMILHGIEAPKIIHANTLTEN----LSDVQERDRFDVILANPPFGGS--------- 381

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              +  E+ +  P   +  + + LFL H    L      GGRA +V+ ++ L N    S 
Sbjct: 382 ---ERKEVQQNFP--IRSGETAFLFLQHFIRMLRA----GGRAGVVIKNTLLSNSDNAS- 431

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
              +R+ LLE   +  ++  P   F    + T +               Q +    L   
Sbjct: 432 -VALRQKLLEECNLHTVLDCPGGTFQGAGVKTVVLFFEKGAP------TQKVWFYQL--D 482

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
                 K   ++D    + +++  +  +   S  LD
Sbjct: 483 PGRNLGKTNPLHDRDLAEFVELQKNFADSPKSWSLD 518


>gi|240115789|ref|ZP_04729851.1| hypothetical protein NgonPID1_06019 [Neisseria gonorrhoeae PID18]
 gi|260440393|ref|ZP_05794209.1| hypothetical protein NgonDG_04771 [Neisseria gonorrhoeae DGI2]
 gi|268601467|ref|ZP_06135634.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|291043690|ref|ZP_06569406.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585598|gb|EEZ50274.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|291012153|gb|EFE04142.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 533

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/517 (16%), Positives = 184/517 (35%), Gaps = 37/517 (7%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+             L+  L +  + +   +        +
Sbjct: 235 HVIGEDKCMIYTQDIS----QKSSNLLRLNLSLNNLVHSLNNVVQGNTILSPYHKDASDR 290

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K+F + +SNPPF   +   +D +E +          P +       M        
Sbjct: 291 ----LKKFDFIVSNPPFKLDFSDFRDQLESDENRERFFAGIPKIKAKDKDKMEIYQLFIQ 346

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F  T   
Sbjct: 347 HILFSLKENGKAAIVLPTGFITAQS--GIDKKIREYLVENKMLAGVVSMPSNIFATTGTN 404

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + +++    
Sbjct: 405 VSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNKQAVED 460

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           FS ++ Y     +   +         +D   ++  E 
Sbjct: 461 FSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|42528246|ref|NP_973344.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|41819516|gb|AAS13263.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|325474564|gb|EGC77750.1| type I restriction-modification system [Treponema denticola F0402]
          Length = 480

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 97/513 (18%), Positives = 168/513 (32%), Gaps = 80/513 (15%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +   + A     L   +W  A+ L        F   I+  T L  L+   E     + 
Sbjct: 1   MAKKEATQAKPEQALTKKVWNMADVLAAAGIG--FTDYIIQLTYLLFLKMDFEKESYGL- 57

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               +        +  V++ G       E  L  L + +        I +          
Sbjct: 58  ---GSALPDGSKWKDIVQLDGPDQLAKYEKILEVLQAAD------GLIGAI--------- 99

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F+    ++ K  LL K+            ++   +   IYE ++ + G +   GA  
Sbjct: 100 ---FTEAQNKIAKPALLKKLIGMIDEENWF--SMDGDLKGAIYESILEKNGQDKKSGAGQ 154

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR +++    ++           P +  T+ DP CGTGGFL  A +++         
Sbjct: 155 YFTPRPLINAMVDVV----------QPKITETVADPACGTGGFLLSAYDYMRKQSDEQSK 204

Query: 237 PPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              L      G ++ P    +    + +  +      D +    + S   +         
Sbjct: 205 VEFLQTKALRGNDITPLVVTLASMNLYLHDI----GVDTTPIKCEDSLEHEPEHL---VD 257

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG +     D                 +   S+  + FL H+   L+     G
Sbjct: 258 VILANPPFGARPAGSVD---------ISTMRSDLIVTTSNNQLNFLQHMMVMLK----DG 304

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA IVL  + LF   AG     +R+ LL++  +  I+ LPT +F+   +   +      
Sbjct: 305 GRAGIVLPDNVLFADGAGEI---LRKKLLKDFNLHTILRLPTGIFYANGVKANVLFFEKG 361

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                    Q     D  T I++    + +   D     +  Y +               
Sbjct: 362 SP------TQETWYYDYRTGIKHTLATKPLKRSD-LEDFVSCYCAGHVEDRKETWSPENP 414

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
             R  K    +      DKTGL     DI+W K
Sbjct: 415 NGRWRKYH--VDELLARDKTGL-----DISWIK 440


>gi|238924766|ref|YP_002938282.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Eubacterium rectale ATCC
           33656]
 gi|238876441|gb|ACR76148.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Eubacterium rectale ATCC
           33656]
          Length = 486

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 183/501 (36%), Gaps = 64/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+          +E    F G + +     +   Y +        +        
Sbjct: 35  LLFIKQLDEV-----ETTKENEANFLGVDYESMFPGECQKYRWSKFKNLGSAEEMYELVL 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   +  + +  +     I ++  A +L KI      +EL      +    +
Sbjct: 90  NGVFPFIKNLHQDGDSAYARY-MGDAIFKIPTAAMLSKIVDGIDKLELG----DEDSKGD 144

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P    T+ DP  G+ 
Sbjct: 145 LYEYLLSKVATAGTN--GQFRTPRHIIKMMVELV----------KPAPDDTIIDPAMGSA 192

Query: 218 GFLTDAMNHVADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL +A +++ +      +           + +G +++     +    ML+  +E     
Sbjct: 193 GFLIEAQSYLRENHPELFLHQESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHGVE----- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI    +LS+     +++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 248 --NPNISYRDSLSEQNTDVEKYSLVLANPPF-------KGSLDYEAVSADLLK----VTK 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGRAA+++    LF   +     +IR+ ++EN+ ++A+
Sbjct: 295 TKKTELLFLALFLRILK----KGGRAAVIVPDGVLF--GSSKAHKQIRKEIIENNKLDAV 348

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR+ I D+  
Sbjct: 349 ISMPSGVFKPYAGVSTAILIFTK----TGSGGTDKVWFYDMKADGLSLDDKRQEIADNDI 404

Query: 450 RQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ +        R+    S  +           +        + +       +  I 
Sbjct: 405 PDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNDYDLSINKYKEIVYEAVQYEPTDVIIG 464

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
                       L  LK ++ 
Sbjct: 465 KIDALESEIQGELAELKKLLD 485


>gi|330879393|gb|EGH13542.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 489

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/497 (18%), Positives = 174/497 (35%), Gaps = 71/497 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +           E  L     
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-------ELEWELMDDSY 53

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSS 122
              +    +    ++    E            NNL   +     +S+   A      F  
Sbjct: 54  RSPIPDSCR--WRTWAADPEGMTGEALKDFIDNNLFPQLQNLHEYSNTPSAYVVRSVFKD 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++                    N+YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKVQEGVDFNKAQERHEFGNLYEQLLRDLQNAGN--AGEFYTPRP 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V      ++           P +   + DP CGTGGFLT A+ H        +  +    
Sbjct: 170 VTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCAIEHKRSRYVKTAEDERTLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +    M++  +E      +   I+  +TLSK        +R H  +
Sbjct: 220 ASIFGVEKKPLPHLLATTNMILHGIE------VPSQIKHDNTLSKPLISWGPSERVHCIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ + + L+     GGRA
Sbjct: 274 ANPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMHLLK----DGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+VL    LF     S    I+  LL    +  IV LP  +F   T I T L   +    
Sbjct: 318 AVVLPDGFLFGDGIKS---RIKEKLLTECNLHTIVRLPKGVFNPYTGIKTNLLFFTKGTP 374

Query: 416 EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            ++      +   +  + +      K R +  ++   + +++   E+  F+  ++     
Sbjct: 375 TKQ------VWFYEHQYPAGVKNYSKTRPMRIEEFA-VEEVWWGSEDDGFAARVENEF-- 425

Query: 475 YRRIKVLRPLRMSFILD 491
             ++ V      ++ LD
Sbjct: 426 AWKVGVGELQARNWNLD 442


>gi|315918351|ref|ZP_07914591.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692226|gb|EFS29061.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 322

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 128/314 (40%), Gaps = 38/314 (12%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L        +              GQE+      +    M +  +  +     + 
Sbjct: 32  GSGSLLLQMKKQFEEHIIEEG------FFGQEINMTNFNLARMNMSLHNINYN-----NF 80

Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I++G TL   L   ++ F   +SNPP+  KW  D D      +     RF P   L   
Sbjct: 81  SIKRGDTLLNPLHNEEKPFDAIVSNPPYSIKWVGDADPTLINDE-----RFAPAGKLAPK 135

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ ++ ++
Sbjct: 136 SYADYAFIMHSLSYL----SSKGRAAIVCFPGIFYRKGA---ERTIRKYLVDNNFVDCVI 188

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + +++  KTE R   V  I+A+  +    N      I+ +     
Sbjct: 189 QLPDNLFFGTSIATCILVMAKNKTENR---VLFIDASKEFKKETN----NNILEEKNINT 241

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADI--TWRK 506
           I++ + +RE  + FSR +             V   +    I +   +  L  +I  T RK
Sbjct: 242 IVEEFRNREEKEYFSRYVGREEIEDNDYNLSVSTYVEKEDIREIIDIKVLNQEIEETVRK 301

Query: 507 LSPLHQSFWLDILK 520
           +  L  S    I K
Sbjct: 302 IDSLRASINEIIKK 315


>gi|307289959|ref|ZP_07569887.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498983|gb|EFM68473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 330

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 130/352 (36%), Gaps = 54/352 (15%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY--------------------L 60
               +++   +L     + L   L            E+Y                     
Sbjct: 1   KMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKE 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               + +D+  +     Y F   ++ +   +   N  N     ++S  +    +F+D D 
Sbjct: 61  DLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQLSSTYNQFNGLFDDVDL 120

Query: 121 SSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S     +   +   + ++ K  + +++        V+ + YE LI +F SE  + A +F
Sbjct: 121 QSKKLGTDEQQRNVTITEVIKKLNDVDVLGH--DGDVIGDAYEFLISQFASEAGKKAGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V  +   ++         +      +++DPT G+G  + +  N++         P
Sbjct: 179 YTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNVRNYLTH-------P 225

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYC 295
             +  HGQEL   T+ +    +++  ++++       NI+ G TL+KD  T +   F   
Sbjct: 226 DNVKYHGQELNTTTYNLAKMNLILHGVDAE-----EMNIRNGDTLNKDWPTDEPYTFDAV 280

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           + NPP+   W  D   ++    +    R+G  L   S     FL+H    L+
Sbjct: 281 VMNPPYSANWSADTTFLD----DSRFNRYGK-LAPKSKADFAFLLHGFYHLK 327


>gi|328947988|ref|YP_004365325.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328448312|gb|AEB14028.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 480

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 103/543 (18%), Positives = 184/543 (33%), Gaps = 92/543 (16%)

Query: 1   MTEFTGSAA----SLANFIWKNAEDLWGDFKHTDFGKVIL---PFTLLRRLECALEPTRS 53
           M +   + A    +L   +W  A+ L        F   I+       L+          S
Sbjct: 1   MAKKERTQAKPEQTLTKKVWNMADVLAAAGVG--FTDYIIQLTYLLFLKMDS----EKES 54

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                 L  G    D+         + Y   E  L TL + +        I +       
Sbjct: 55  YGLGSALPEGSKWKDIVELDGPDQLAKY---EKILETLQAKD------GLIGAI------ 99

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 F+    ++ K  LL K+            ++   +   IYE ++ + G +   G
Sbjct: 100 ------FTEAQNKISKPALLKKLIGMIDEENWF--SMEGDLKGAIYESILEKNGQDKKSG 151

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  + TPR +++    ++           P +  T+ DP CGTGGFL  A + +      
Sbjct: 152 AGQYFTPRPLINAMVDVI----------QPQITETVADPACGTGGFLLAAYDFMRKQSDE 201

Query: 234 HKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                 L      G ++ P    +    + +  + +D     +    + S   +      
Sbjct: 202 QDKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGTDT----TPIKCEDSLEHEPEHL-- 255

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
                L+NPPFG +     D     +           +   S+  + FL H+   L+   
Sbjct: 256 -VDVILANPPFGARPAGSVDITTMRN---------DLIVTTSNNQLNFLQHMMLMLK--- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRA IVL  + LF   AG    ++R+ LL++  +  I+ LPT +F+   +   +   
Sbjct: 303 -DGGRAGIVLPDNVLFADGAGE---KLRKKLLKDFNLHTILRLPTGIFYANGVKANVLFF 358

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRML 468
                 +           D  T I++    + +   D     +  Y     E+ K +   
Sbjct: 359 EKGTPTKET------WYYDYRTGIKHTLATKPLKRSD-LDDFVSCYCAGHMEDRKETWSE 411

Query: 469 DYRTFGYRRIKVLR-------PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
           +  T  +R+  V          L +S+I DK  L     D+T ++L    Q    +I   
Sbjct: 412 ENPTGRWRKYNVDELLERDKTSLDISWIKDKDDLE----DVTLKELFSTIQEKGKNINNA 467

Query: 522 MMQ 524
           + Q
Sbjct: 468 INQ 470


>gi|148652933|ref|YP_001280026.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
 gi|148572017|gb|ABQ94076.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
          Length = 302

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 105/314 (33%), Gaps = 29/314 (9%)

Query: 1   MTEFTGS------AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           MT  T S       + +   +W   +   G      +   IL    L+ L          
Sbjct: 1   MTSATSSMSTPISQSEINKAVWNACDTFRGVISADTYKDFILTMLFLKYLSDVYRDEHDT 60

Query: 55  VREKY--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +  +Y         +  + FV   G SF++  E              L +   +  +  K
Sbjct: 61  LMAEYGDADLVKELMSNQRFVLPDGASFWDLYEQRHQPGNGQRIDEALHAIEEANGNKLK 120

Query: 113 AIFEDFDFSSTI--ARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFG 167
            +F+D  F++       +K  LL  + ++F    + L P  V    V+ N YE LI+ F 
Sbjct: 121 NVFQDISFNTDRLGNEKKKNELLRHLLEDFGKPMLNLSPSRVGSLDVIGNAYEFLIKHFA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           ++    A +F TP +V  L   +L          +P     + DP CG+G  L       
Sbjct: 181 ADSGASAGEFYTPPEVSSLLATIL----------NPVAGDAICDPACGSGSLLIKCGAMA 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                           GQE    T A+    M +     D  R    +  +   L  D  
Sbjct: 231 RKNSGSKNYE----LFGQEAIGSTWALAKMNMFLHG--EDNHRIEWGDTLRYPLLLDDKG 284

Query: 288 TGKRFHYCLSNPPF 301
              +F    +NPPF
Sbjct: 285 HLLQFDVVTANPPF 298


>gi|17231112|ref|NP_487660.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
 gi|17132753|dbj|BAB75319.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
          Length = 484

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/500 (17%), Positives = 181/500 (36%), Gaps = 60/500 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E        + L     +   E        ++   SE            
Sbjct: 33  MIFLKVFDAREEEY------ELLEDNYKSPIPEGLRW---RNWAADSEGITGDGLLDFVD 83

Query: 98  NNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L   +      + +A+       F      ++   L+ ++    + ++ +      + 
Sbjct: 84  NALFKTLKELRTTATDARGQMIGKVFEDAYNYMKNGTLIRQVINKLNEVDFNKKDQK-KQ 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S IYE +++   S  +  A ++ TPR V       +           P +   ++DP C
Sbjct: 143 FSEIYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPAC 190

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A++++        +P IL     G E +P  + +C+  +++  ++       
Sbjct: 191 GTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPYNLCITNLILHGIDVPEAEHD 250

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      +D    +R    ++NPPFG     ++D +E            P   +  
Sbjct: 251 NTLAR----PLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL+ +A+ L+     GGR AIVL    LF       ++ I+  LL++  +  IV 
Sbjct: 295 ETADLFLVLIAHLLK----EGGRGAIVLPDGTLF---GEGVKTRIKEKLLQDCNLHTIVR 347

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRR 450
           LP  +F   T I T L   +  +  E       I   +  + +      K + I  ++  
Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTET------IWYYEHPYPAGYKSYSKTKPIRFEEFA 401

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD--ITWRKLS 508
              + + +RE  +F+  +           +         ++   L  + AD      +L 
Sbjct: 402 PEQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLADHQKLMAELG 461

Query: 509 PLHQSFWLDILKPMMQQIYP 528
            +      ++++ +  Q+  
Sbjct: 462 EVRSKLKFELIEALNDQVDK 481


>gi|297528756|ref|YP_003670031.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
 gi|297252008|gb|ADI25454.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
          Length = 484

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 164/434 (37%), Gaps = 59/434 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+          RE+  A  G   +   F     +  ++  ++  +        
Sbjct: 35  LLFIKGLDEV-----ETQREQEDALLGIESE-RIFPPDKQHLRWSKFKHFEAAHMYDVVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   N ++ +  +     I  +    +L KI      I +           +
Sbjct: 89  NEVFPFIKNLHGNRESAYAKY-MGDAIFMIPTPQMLVKIVDGIDRIPMK----DRDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++H+   L+           P     + DP  G+ 
Sbjct: 144 LYEYLLSKIATAGTN--GQFRTPRHIIHMMVELM----------KPTPEDIIVDPAAGSA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++    S   +   L       + +G +++     +    M++  +E     
Sbjct: 192 GFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMDRTMLRIGAMNMMLHGIE----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      ++   L+NPPF  K   D DAV  +            + K
Sbjct: 247 --NPNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLDYDAVSNDLLK---------VVK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +     +IR+ ++EN  +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCACIVPDGVLF--GSSKAHKDIRKEIVENHKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR  I ++  
Sbjct: 348 ISMPSGVFKPYAGVSTAIMIFTK----TGVGGTDHVWFYDMKADGYSLDDKRTPIEENDI 403

Query: 450 RQILDIYVSRENGK 463
             I++ + +RE  K
Sbjct: 404 PDIIERFHNREAEK 417


>gi|166711014|ref|ZP_02242221.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 489

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 158/459 (34%), Gaps = 66/459 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ L+          RE+       N       ++   ++    E        +   
Sbjct: 33  MLFLKILDD---------REQEWELIHENYRSPLPQRLRWRNWAADPEGITGDELKSFID 83

Query: 98  NNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDR 153
            +L   +   +              F      ++   L+ ++     SG++ +       
Sbjct: 84  IDLFPDLRDLTPRHSKPLGFVVRDVFQDAYNYMKSGQLIRQVLNKIQSGVDFN-KAQERH 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE L+R   S  +  A +F TPR V      ++           P +   + DP 
Sbjct: 143 AFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKVMDPA 190

Query: 214 CGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           CGTGGFLT A+ H        +  +        G E +P  H +    M++  +E     
Sbjct: 191 CGTGGFLTCAIEHKRQRYVRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGIE----- 245

Query: 271 DLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   I+  +TL++       G+R    ++NPPFG     ++D +E            P 
Sbjct: 246 -VPSQIKHDNTLARPLISWGPGERVDCIVANPPFGG---MEEDGIESNF---------PA 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL    +
Sbjct: 293 AFRTRETADLFLVLIMHLLK----DGGRAAVVLPDGFLFGEGIKS---RIKEKLLTECNL 345

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKR 441
             +V LP  +F   T I T L   +      R   V             ++  +    + 
Sbjct: 346 HTVVRLPNGVFNPYTGIKTNLLFFTKG---TRTKDVWFYEHQYPAGYKSYSKTKPMRVEE 402

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             + +         + +R+  KF+  + +     R   +
Sbjct: 403 FAVEEAWWGSEATGFAARQENKFAWKVSFDELQRRNWNL 441


>gi|254227051|ref|ZP_04920609.1| N-6 DNA Methylase family [Vibrio cholerae V51]
 gi|125620426|gb|EAZ48802.1| N-6 DNA Methylase family [Vibrio cholerae V51]
          Length = 492

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/490 (19%), Positives = 177/490 (36%), Gaps = 83/490 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV------ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           SL   I +  + L  D   +           +L    L+ L+        + +E      
Sbjct: 2   SLQQKIDRITDILRRDDGISGAMHYTEQTSWVL---FLKFLDDY-----ESEKEDEAVLS 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR----------NNLESYIASFSDNAKA 113
           G +       +   +S +   + +   L     R          N L  Y+ SF++ A  
Sbjct: 54  GKDYQPV-LDEEHRWSNWACPKNAEGKLDINKVRTGDDLTEYVNNELFPYLKSFANAAVT 112

Query: 114 IFEDFDFSSTI--------ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
             +   F+  I         ++     L ++      +           +S +YE L++ 
Sbjct: 113 GSDPKSFAYKIGAIFQYLDNKVASGHTLREVLDIIDTLNFQSSD-EMFELSLVYEGLLQN 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            G      A +F TPR VV      +           P   +T+YD   G+ GFL +A +
Sbjct: 172 MGDAGGY-AGEFYTPRPVVRAMIKAI----------DPQAGQTIYDAAAGSCGFLVEAFD 220

Query: 226 HVADCGS-----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           H+    S                G E     + + +  M++  +ES      +   Q   
Sbjct: 221 HLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMGMMNMILHGIESPNLFRGNTLTQN-- 278

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +D+    R+   L+NPPFG K   +KD +++               K +   +LF+ 
Sbjct: 279 --IRDIQEKDRYDIILANPPFGGK---EKDQIQQNF-----------PVKANATELLFMQ 322

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
           H    L+     GG+AAIV+    LF  +  S   ++++ LLEN  +  I++LP  +F  
Sbjct: 323 HFMKTLK----SGGKAAIVVPEGILF--QTNSAFKQVKQELLENFNLHTILSLPAGVFLP 376

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            + + T +         ER G    +   +       +  K + I DD  ++ +++Y SR
Sbjct: 377 YSGVKTNVLFF------ERSGGTSEVWYYEC--EPEQKLTKNKPITDDHLKEFVELYSSR 428

Query: 460 ENGKFSRMLD 469
           E  + S  + 
Sbjct: 429 ETTERSWTVS 438


>gi|313668371|ref|YP_004048655.1| Type I restriction-modification system DNA methylase [Neisseria
           lactamica ST-640]
 gi|313005833|emb|CBN87288.1| putative Type I restriction-modification system DNA methylase
           [Neisseria lactamica 020-06]
          Length = 533

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 193/529 (36%), Gaps = 59/529 (11%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE  FT    +L + +              +F  +I    L + L    +     +RE+
Sbjct: 1   MTEQHFTEQTKALIDSLKTICAHYGLGNDGNEFK-IISQAFLYKFLNDKYDFEVKQIREE 59

Query: 59  Y----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSDN 110
                + F   +I+ ++ V    +S    SE       + L      +        FS  
Sbjct: 60  KPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNAELFSVK 119

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIRR 165
            +   +   F      +   G             +G              + I+E+LI+ 
Sbjct: 120 TEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIKD 179

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  +
Sbjct: 180 YNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVAH 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +         I     Q+         +   L+  L          N+ QG+T+   
Sbjct: 236 AIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILSP 282

Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS----- 335
                    K+F + +SNPPF   +   +D +E E       RF  G+PKI         
Sbjct: 283 AHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKME 339

Query: 336 --MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LF+ H+   L+      G+AAIVL +  +        + +IR +L+EN ++  +V++
Sbjct: 340 IYQLFIQHILFSLK----ENGKAAIVLPTGFITAQS--GIDKKIREYLVENKMLAGVVSM 393

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+++F  T     +  +        +  V LI+A+ L   I++   ++ +++ ++ ++I 
Sbjct: 394 PSNIFATTGTNVSILFIDK----ANKDNVVLIDASGLGKKIKDGKNQKTVLSREEEQKIC 449

Query: 454 DIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           + +  ++    FS ++ Y     +   +         +D   ++  E +
Sbjct: 450 NTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFE 498


>gi|148549814|ref|YP_001269916.1| N-6 DNA methylase [Pseudomonas putida F1]
 gi|148513872|gb|ABQ80732.1| N-6 DNA methylase [Pseudomonas putida F1]
          Length = 489

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 162/490 (33%), Gaps = 69/490 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +          RE+       
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD---------REQEWELLDD 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
           +            ++    E            NNL   + +  +             F  
Sbjct: 52  DYRSPIPESCRWRTWAANPEGITGDALKDFIDNNLFPQLQNLHEYSTTPATYVVRGVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   L+ ++                    ++YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLIRQVINKIQEGVDFNKAQERHAFGDMYEQLLRDLQNAGN--AGEFYTPRP 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPI 239
           V      ++           P +   + DP CGTGGFLT ++ H        +  +    
Sbjct: 170 VTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCSIEHKRKRYVQTAEDERALQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +    M++  +E      +   I+  +TL +        +R    +
Sbjct: 220 ASIFGVEKKPLPHLLATTNMILHGIE------VPNQIKHDNTLGRPLISWGPAERVDCIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ + + L+     GGRA
Sbjct: 274 ANPPFGG---MEEDGIETNF---------PTAFRTRETADLFLVLIMHLLK----DGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+VL    LF     S    I+  LL    +  IV LP  +F   T I T L   +    
Sbjct: 318 AVVLPDGFLFGEGIKS---RIKEKLLAECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTP 374

Query: 416 EERRGKVQLIN-----ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            +    V             ++  +    +   + +      +D + +R   +F+  + +
Sbjct: 375 TK---DVWFYEHQYPAGYKSYSKTKPMRVEEFAVEEAWWGSEVDGFAARRENEFAWKVSF 431

Query: 471 RTFGYRRIKV 480
                R   +
Sbjct: 432 DELQNRNWNL 441


>gi|313673807|ref|YP_004051918.1| site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940563|gb|ADR19755.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 466

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/493 (20%), Positives = 173/493 (35%), Gaps = 85/493 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           + + N +W     L       D+G  I        ++  +           EK +     
Sbjct: 2   SDIVNKLWGMCHTLR--HDGIDYGDYIEQLTYLLFIKMAD-----------EKGIELPE- 47

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           N D E+    +G    +   + L  L                  + K +  D  F+ ++ 
Sbjct: 48  NCDWETLKNKSGTELTDHYLWVLQKLR-----------------DEKGLLGDI-FAQSMP 89

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +      L KI       +    ++   V +  +E L+ +  SE  +GA  + TPR ++ 
Sbjct: 90  KFNNPVNLKKIITMIDAEDWS--SLGVDVKAQAFEGLLEKAASEGKKGAGQYFTPRVLIQ 147

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPI 239
                ++ PD  + KE       + DP CGTGGFL  A   + +           K    
Sbjct: 148 SIVR-VMKPDPLVNKE-----MKICDPACGTGGFLVAAYEWLIEKTGGAIPVDEIKRIKE 201

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL      + +  + +  L+          I  G T+ +    G+R+   L+NP
Sbjct: 202 NTYYGQELVARPRRLALMNLFLHGLK--------PTIYLGDTIYEP-DRGERYDIVLTNP 252

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG K              G++          S+  + F+ H+   L+     GGRAAIV
Sbjct: 253 PFGTKGA------------GQIPTRDDFTVATSNKQLNFVQHIMTILK----KGGRAAIV 296

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEER 418
           L  + LF  +A     E+ + ++E+  +  I+ LP   F    N    +  L      E+
Sbjct: 297 LPDNCLFEDKA----VEVFKIVMEDCNLHTILRLPRGTFVPYANAQANVVFLQKGIPTEK 352

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
                 +   D  ++I +  KK R +  +        Y    NG   R+       +R  
Sbjct: 353 ------VWIYDCRSNIPSITKKDRPLTAEMFADFEQCYGKDPNGNSPRIDQGPEGRFRAF 406

Query: 479 KVLRPLRMSFILD 491
            +       + LD
Sbjct: 407 TIDEIKERGYKLD 419


>gi|322386251|ref|ZP_08059883.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus cristatus ATCC 51100]
 gi|321269713|gb|EFX52641.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus cristatus ATCC 51100]
          Length = 536

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 196/521 (37%), Gaps = 66/521 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYLAFGGSNID------------- 68
           +  ++  +   F   + L          +      E  L     + D             
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYLAQVLDAGNTYENLLTMSEEDYDWLLEDIGTSTAWL 86

Query: 69  -----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                +ES  +    + +   E   +TL      NN    + +  D A  +F++   + T
Sbjct: 87  KPDQLIESLHRQQNEATFY--EIFENTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDT 144

Query: 124 IARLEKAGLLYKICKNF---SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           I+   K   + K   N       +    +      S ++E++I+ +  +      ++ TP
Sbjct: 145 ISDSSKRNEVAKAIINLLTRVKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTP 204

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +   +L+  D             +YDP+ G+G  L +  + +             
Sbjct: 205 HSVAKIIADILVGNDQPSNV-------RIYDPSAGSGTLLMNLASRIG--------VDKT 249

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + Q++  ++  +         L  +  +    NI QG+T+  +    ++ +Y +SNPP
Sbjct: 250 TVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTIIANRHP-EKMNYIVSNPP 303

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAA 357
           F   + + +D VE   +  E  RF  G+PK    S   M         +       G+AA
Sbjct: 304 FKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSDGQAA 361

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +    
Sbjct: 362 VVLPTGFITAQS--GIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK---- 415

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476
            +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E    FS  + Y     +
Sbjct: 416 NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTISYEDIKEK 475

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQS 513
              +         +D   +   E +        KLS L Q 
Sbjct: 476 NYSLSAGQFFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQ 516


>gi|210610695|ref|ZP_03288576.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787]
 gi|210152328|gb|EEA83334.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787]
          Length = 545

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/536 (16%), Positives = 185/536 (34%), Gaps = 66/536 (12%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVRE--------KYLAFGGSNIDLESF------- 72
            +++  +I    L + L            E        +      S  D E         
Sbjct: 30  SSEYK-IITEIFLYKFLNDKFLYEVQQAEESLKDSDNVEQALNDMSEDDYEMLMMLLPPA 88

Query: 73  -VKVAGYSFY-----------NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-- 118
             K+    F                +  +    +NT  ++ S      D  +   E    
Sbjct: 89  TAKLKKEHFISCLFNHKNDDKFNELFDSTLWDISNTNLDVFSVSTGSGDKIRLFDEHLSQ 148

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           + + +  R +    +      FS  +           + I+E+LI+ +  +  + A ++ 
Sbjct: 149 NVTESNRRSDFCKAMIDKLVTFSFADAFSQKY--DFFATIFEYLIKDYNKDFGKYA-EYY 205

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   +++               T+YDP  G+G  +    + + +         
Sbjct: 206 TPHSIASIIARIMVPEG--------TQNVTVYDPAAGSGTLVLALAHEIGESNCTIYTQD 257

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I     + L        +   L   +  D         +Q +          +F Y +SN
Sbjct: 258 ISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKN-------GLMKFDYIVSN 310

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGG 354
           PPF   +  ++D +  +          P +P     SM     FL H+   ++     G 
Sbjct: 311 PPFNVDFSDNRDTLAGDIYKERFWAGVPNIPNKKKDSMAIYQMFLQHIIFSMK---ENGC 367

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+V+ +  L  G       +IR  +++  ++  +V++P+++F  T     +  L N K
Sbjct: 368 KAAVVVPTGFLTAGT--GIPKKIRERIVKERMLRGVVSMPSNIFATTGTNVSVVFLDNTK 425

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
             E+     L++A+ L T ++ +GK +R +++ ++   I+  + + E+   FS ++DY  
Sbjct: 426 KYEQA---ILMDASKLGTKVKIDGKNQRTVLSPEEIEDIIHTFNNFESKDDFSVVVDYEK 482

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQ 524
              ++            ++   L + E          KL+ L     +   + M Q
Sbjct: 483 IEQKKCSFSAGQYFEVKIEYVELTQEEFKAKMDEYTEKLTELFAEGNVLQAEIMEQ 538


>gi|295426377|ref|ZP_06819030.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295063936|gb|EFG54891.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 537

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/520 (16%), Positives = 188/520 (36%), Gaps = 53/520 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGGSNIDLESF------------ 72
           +  ++  V   F   + L      E  +   +  Y      + D                
Sbjct: 29  EAGEYKLVTQSFL-YKFLNDKFLYEAKKYDSQNDYQHLMDLSDDDYEMTQLSLGTDSAVI 87

Query: 73  -VKVAGYSFYNTSE-------YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
             K    + YN          +  +        N+L S   + +   +         +  
Sbjct: 88  QRKDLIETIYNQQNVDDFSEVFDSALNDIALDNNDLFSVETAGNTQVRLFDAHLIADNIQ 147

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              ++  +  ++ K  +  +       +     S I+E++I+ +         ++ TPR 
Sbjct: 148 DGSQRDHVARELIKLLASTKFDNSIFDEGFDFFSTIFEYMIQDYNKNGGGNYAEYYTPRT 207

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +  +   +L+        ++      +YDP  G+G  L +  N +               
Sbjct: 208 ISKIIADILI-------GKAKPENVKVYDPAAGSGTLLMNVANRIG--------VDKCTV 252

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           + Q++  ++  +         L  +       NI QG+T+  +    ++  Y +SNPPF 
Sbjct: 253 YSQDISQKSSNLLRL-----NLILNNLSHSIHNIVQGNTILNNKHP-EKMDYIVSNPPFK 306

Query: 303 KKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             +   +D VE    + E+   G P +P     SM         +    N  G+A +V+ 
Sbjct: 307 LDFSDWRDQVESIPNSSEIYFAGIPKIPNKKKNSMAIYELFIQHIIHSLNDKGKAGVVVP 366

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +  L        + +IR++L++N +I+ +V++P+++F  T     +   +  K ++   +
Sbjct: 367 TGFLTAQS--GIDKKIRKFLVDNGMIDKVVSMPSNVFANTGTNVSVIFFNKVKQDD---Q 421

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKV 480
           VQLI+A+ L   I+  G +R  ++ +  ++I+D  V R++   FS  +  +    +    
Sbjct: 422 VQLIDASKLGKKIKENGLQRTALSVEDIKKIVDTAVERKDVDDFSITVSLKDIKDKNYSF 481

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                    ++   L + E +   +K        ++   K
Sbjct: 482 SAGQYFPVKIEYVKLTQDEFEERIQKYQNNLNKLYVQGNK 521


>gi|240125823|ref|ZP_04738709.1| hypothetical protein NgonSK_06352 [Neisseria gonorrhoeae SK-92-679]
 gi|268684422|ref|ZP_06151284.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268624706|gb|EEZ57106.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 533

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 184/522 (35%), Gaps = 47/522 (9%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +ID ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                     K+F + +SNPPF   +   +D +E +  +       P +       M   
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENHERFFAGIPKIKPTKKEKMEIY 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F 
Sbjct: 342 QLFIQHILFSLKENGKAAIVLPTGFITAKS--GIDKKIREYLVENKMLAGVVSMPSNIFA 399

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  +        + KV LI+A+ L   I     ++ +++ ++ ++I   +  +
Sbjct: 400 TTGTNVSILFIDKV----NKDKVVLIDASGLGEKISINDNQKTVLSHEEEQKICHTFTHK 455

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    FS ++ Y     +   +         +D   ++  E 
Sbjct: 456 QAVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|242278889|ref|YP_002991018.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242121783|gb|ACS79479.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 489

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 168/456 (36%), Gaps = 68/456 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91
              L+ L+  LE  R+   E         ID E      +  K A  SF + S  +   L
Sbjct: 32  MLFLKYLDD-LEAARAEDEELRGNDYEFIIDAEHRWSSWAAPKNADGSFDHDSALTGDDL 90

Query: 92  GSTNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
             T     L  Y+  F      +D  +    +  F     + +    L    +    ++ 
Sbjct: 91  -ITYVDEELFPYLKGFKQRASSADTIEYKIGEI-FGEIKNKFQSGYSLRDALELMDKLQF 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    +S++YE  I+  G+       ++ TPR ++     +           SP +
Sbjct: 149 -KSQKEKHELSHLYETKIKNMGN-AGRNGGEYYTPRPLIRAMIKVA----------SPTI 196

Query: 206 IRTLYDPTCGTGGFLTDAMNHVA--DCGSHHKIP-------PILVPHGQELEPETHAVCV 256
             T+YD  CG+ GFL ++ +H+     G   K+             +G+E +   + + +
Sbjct: 197 GETIYDGACGSAGFLCESYDHLRYGSDGKEAKLSVDQLRSLQTSTFYGKEKKSLAYVIAI 256

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++  +++      +           D+    R+   L+NPPFG K            
Sbjct: 257 MNMILHGIDTPNILHTNTLADN----LADVQEKDRYDIILANPPFGGK------------ 300

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +  E+ +  P   K  + + LFL H    L+     GGRAA+V+ ++ L N    S    
Sbjct: 301 ERKEIQQNFP--IKTGETAFLFLQHFIKYLKA----GGRAAVVIKNTFLSNSDNAS--KS 352

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +R+ LLE+  +  ++  P   F    + T +          +    QL     L      
Sbjct: 353 LRKELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAATRKTWYYQLDPGRSLG----- 407

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
              K   +NDD  ++ +++   ++  + S ++D++ 
Sbjct: 408 ---KTNPLNDDDLKEFIELQKDQQESEKSWVVDFKD 440


>gi|148927363|ref|ZP_01810894.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147887262|gb|EDK72723.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 347

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 28/288 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V   IYE L  +F S+   GA  + TPR ++   T  L           P   +T+ D 
Sbjct: 19  DVKGEIYEGLFEKFASDTKTGAGQYFTPRPLIQAMTECL----------RPEPSKTMADF 68

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDP 268
             GTGGF     +++A+    +K     + +    G E+ P T  +C+  + +  +    
Sbjct: 69  AAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTFTGNEIVPATARLCLMNLFLHNIGD-- 126

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             D    I    +L+ D  +GKRF Y L NPPFGKK        +       L       
Sbjct: 127 -MDSKPPIHLTDSLASD--SGKRFDYILMNPPFGKKSSITVSNEDGTQSKESLTYERQDF 183

Query: 329 PKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S+  + F+ H+ ++L++     G+AA+++  + LF G AG     IR+ LL+   I
Sbjct: 184 WTTTSNKQLNFVQHICSQLKV----DGKAAVIVPDNVLFEGGAGE---TIRKKLLQTTEI 236

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
             I+ LPT +F+   +   +    NR    +  + + +   D+ T+  
Sbjct: 237 HTILRLPTGIFYANGVKANVIFFDNR-PASKEVQTKDVWVYDMRTNQH 283


>gi|261392483|emb|CAX50032.1| putative type I restriction-modification system M protein
           [Neisseria meningitidis 8013]
          Length = 533

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/488 (15%), Positives = 169/488 (34%), Gaps = 33/488 (6%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAFGGSNIDLESFVKVAGYSFYN 82
              +F  +I    L + L    +     VR++     + F   +I+ ++ V    +S   
Sbjct: 29  DGNEFK-IISQAFLYKFLNDKYDFEVKKVRKENPNDPIEFVNMDIEGKTAVLKPEHSIKY 87

Query: 83  TSE----YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI-- 136
            SE       + L      +        FS   +   +   F      +   G       
Sbjct: 88  LSERQNGADFAKLFDDTLTDIAACNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCR 147

Query: 137 --CKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
                 +G              + I+E+LI+ + S       ++ TP  V  +   +L+ 
Sbjct: 148 ALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVP 207

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
            D      S      +YDP+ G+G  L +  + + +         I       L      
Sbjct: 208 EDVRGQIRSVD----VYDPSAGSGTLLMNVAHAIGEDKCMIYTQDISQKSSNLLRLNLIL 263

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
             +   L   ++ +     +     G          K+F + +SNPPF   +   +D +E
Sbjct: 264 NNLVHSLNNVVQGNTILSPAHKDASGCL--------KKFDFIVSNPPFKLDFSDFRDRLE 315

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            +  +       P +       M         +       G+AAIVL +  +        
Sbjct: 316 SDENHERFFAGIPKIKPTKKEKMEIYQLFIQHILFSLKENGKAAIVLPTGFITAKS--GI 373

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           + +IR +L+EN ++  +V++P+++F  T     +  +        + KV LI+A+ L   
Sbjct: 374 DKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDKV----NKDKVVLIDASGLGEK 429

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I     ++ +++ ++ ++I + + +++    FS ++ Y     +   +         +D 
Sbjct: 430 ISINDNQKTVLSCEEEQKICNTFTNKQAVEDFSVVIGYDEIKAKNHSLSAGQYFEVKIDY 489

Query: 493 TGLARLEA 500
             ++  E 
Sbjct: 490 VDISADEF 497


>gi|152987952|ref|YP_001351361.1| type I restriction-modification system subunit M [Pseudomonas
           aeruginosa PA7]
 gi|150963110|gb|ABR85135.1| type I restriction-modification system, M subunit [Pseudomonas
           aeruginosa PA7]
          Length = 489

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/499 (17%), Positives = 160/499 (32%), Gaps = 87/499 (17%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +                    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDDR------------------ 42

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASFSD---NAKA 113
             + E            +  +                    NNL   + +  +      A
Sbjct: 43  EQEWELLDDAYRSPIPESCRWRTWAADPEGITGDELKNFIDNNLFPQLQNLHEYSTTPAA 102

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 F      ++   L+ ++                    ++YE L+R   +  +  
Sbjct: 103 YVVRGVFEDAYNYMKSGQLIRQVINKIQEGVDFNKAQERHAFGDMYEQLLRDLQNAGN-- 160

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-- 231
           A +F TPR V      ++           P +   + DP CGTGGFLT  + H       
Sbjct: 161 AGEFYTPRPVTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCTIEHKRSRYVK 210

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LF 287
            +  +        G E +P  H +    M++  +E      +   I+  +TLS+      
Sbjct: 211 TAEDERVLQASIFGVEKKPLPHLLATTNMILHGIE------VPSQIKHDNTLSRPLISWG 264

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G+R    ++NPPFG     ++D +E            P   +  + + LFL+ + + L+
Sbjct: 265 PGERVDCIVANPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMHLLK 312

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY 406
                GGRAA+VL    LF     S    I+  LL    +  IV LP  +F   T I T 
Sbjct: 313 ----DGGRAAVVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPYTGIKTN 365

Query: 407 LWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           L   +     +   +V             ++  +    +   + +       D + +R  
Sbjct: 366 LLFFTKGSPTK---EVWFYEHQYPAGYKSYSKTKPMRIEEFAVEEAWWGSEADGFAARVE 422

Query: 462 GKFSRMLDYRTFGYRRIKV 480
            +F+  +       R   +
Sbjct: 423 NEFAWKVSLDELRARNWNL 441


>gi|218667350|ref|YP_002426004.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519563|gb|ACK80149.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 484

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 163/461 (35%), Gaps = 65/461 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---- 93
              L+ L  ALE  R+   E  L        LE   +   ++   T++  +    +    
Sbjct: 32  LLFLKYL-DALEQDRA--MEAELEGRPYTFILEDAFRWEHWAAPKTADGRMDHHKAMSGD 88

Query: 94  ---TNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
                    L  Y++ F      S+  +    +  FS    +++    L +I +   G+ 
Sbjct: 89  DLRDFVNIRLFPYLSGFKRRATGSNTIEYKIGEI-FSEIKNKIQSGYNLREIVEIIDGLR 147

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
               T     +S++YE  I+  G+       ++ TPR ++     ++          +P 
Sbjct: 148 FRSQTEK-HELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAIVQVV----------APK 195

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGML 260
           +   +YD   G+ GFL +A +++           +       +G+E +   + + +  M+
Sbjct: 196 VGEKIYDGAVGSAGFLCEAFDYLKAQPGLTTGDMQTLQERTFYGKEKKSLAYVIAIMNMI 255

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +++      +   +       D+    R    L+NPPFG K  K+            
Sbjct: 256 LHGIDAPNIVHTNTLAEN----LMDIQPKDRVDVVLANPPFGGKERKEVQQN-------- 303

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K  + + LFL H    L+     GGRA +V+ ++ L N    S    +R+ 
Sbjct: 304 ------FPIKTGETAFLFLQHFIRMLKA----GGRAGVVIKNTFLSNTDNAS--VSLRKL 351

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  +  ++ LP   F    + T +          +      +    L  +      K
Sbjct: 352 LLEDCNLHTVLDLPGGTFQGAGVKTVVLFFDKGAPTRK------VWYYQL--NPGRNMGK 403

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
              +ND+   + + +  ++ +   S  +D      R   + 
Sbjct: 404 TNPLNDNDLAEFVALQKTKADSPQSWTVDVSGIDTRTYDLS 444


>gi|26991424|ref|NP_746849.1| type I restriction-modification system, M subunit [Pseudomonas
           putida KT2440]
 gi|24986496|gb|AAN70313.1|AE016672_4 type I restriction-modification system, M subunit [Pseudomonas
           putida KT2440]
          Length = 489

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 164/493 (33%), Gaps = 75/493 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +          RE        
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDD---------RELEWELMDD 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSS 122
           N            ++    E            NNL   +     +S+   A      F  
Sbjct: 52  NYKSPIPDSCRWRTWAADPEGMTGDALKDFIDNNLFPQLQNLHEYSNTPSAFVVRSVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++                    N+YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRDLQNAGN--AGEFYTPRP 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V      ++           P +   + DP CGTGGFLT A+ H        +  +    
Sbjct: 170 VTEFMVRMV----------DPKLAEKVMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +    M++  +E      +   I+  +TLSK        +R H  +
Sbjct: 220 ASIFGVEKKPLPHLLATTNMILHGIE------VPSQIRHDNTLSKPLISWGPSERVHCIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGRA
Sbjct: 274 ANPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMQLLK----DGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+VL    LF     S    I+  LL    +  IV LP  +F   T I T L   +    
Sbjct: 318 AVVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTP 374

Query: 416 EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRR-------QILDIYVSRENGKFSRM 467
            ++      +   +  + +      K R +  ++            D + +R    F+  
Sbjct: 375 TKQ------VWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAWQ 428

Query: 468 LDYRTFGYRRIKV 480
           +       R   +
Sbjct: 429 VSVEELQARNWNL 441


>gi|194098760|ref|YP_002001822.1| hypothetical protein NGK_1197 [Neisseria gonorrhoeae NCCP11945]
 gi|239999053|ref|ZP_04718977.1| hypothetical protein Ngon3_06190 [Neisseria gonorrhoeae 35/02]
 gi|268594897|ref|ZP_06129064.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02]
 gi|193934050|gb|ACF29874.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268548286|gb|EEZ43704.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02]
 gi|317164346|gb|ADV07887.1| hypothetical protein NGTW08_0919 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 533

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 183/522 (35%), Gaps = 47/522 (9%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +ID ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+             L+  L          N+ QG+T+  
Sbjct: 235 HVIGEDKCMIYTQDIS----QKSSNLLRLNLSLNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                     K+F + +SNPPF   +   +D +E +  +       P +       M   
Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHERFFAGIPKIKPTKKEKMEIY 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F 
Sbjct: 342 QLFIQHILFSLKENGKAAIVLPTGFITAKS--GIDKKIREYLVENKMLAGVVSMPSNIFA 399

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  +        + KV LI+A+ L   I     ++ +++ ++ ++I   +  +
Sbjct: 400 TTGTNVSILFIDKV----NKDKVVLIDASGLGEKISINDNQKTVLSHEEEQKICHTFTHK 455

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    FS ++ Y     +   +         +D   ++  E 
Sbjct: 456 QAVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 497


>gi|217980300|ref|YP_002364276.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500937|gb|ACK48909.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 492

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 175/490 (35%), Gaps = 83/490 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV------ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           SL   I +  + L  D   +           +L    L+ L+        + +E      
Sbjct: 2   SLQQKIDRITDILRRDDGISGAMHYTEQTSWVL---FLKFLDDY-----ESEKEDEAVLS 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR----------NNLESYIASFSDNAKA 113
           G +       +   +S +   + +   L     R          N L  Y+ SF++ A  
Sbjct: 54  GKDYQPV-LDEEHRWSNWACPKNAEGKLDINQVRTGDDLTDYVNNELFPYLKSFANAAVT 112

Query: 114 IFEDFDFSSTI--------ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
             +   F+  I         ++     L ++      +           +S +YE L++ 
Sbjct: 113 GSDPKSFAYKIGAIFQYLDNKVASGHTLREVLDIIDTLNFQSSD-EMFELSLVYEGLLQN 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            G      A +F TPR VV      +           P   +T+YD   G+ GFL +   
Sbjct: 172 MGDAGGY-AGEFYTPRPVVRAMIKAI----------DPQAGQTIYDAAAGSCGFLVEVFE 220

Query: 226 HVADCGS-----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           H+    S                G E     + + +  M++  +ES      +   Q   
Sbjct: 221 HLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMGMMNMILHGIESPNLFRGNTLTQN-- 278

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +D+    R+   L+NPPFG K   +KD +++               + +   +LFL 
Sbjct: 279 --IRDIQEKDRYDIILANPPFGGK---EKDQIQQNF-----------PIRANATELLFLQ 322

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
           H    L+     GG+AAIV+    LF  +  S   ++++ LLEN  +  I++LP  +F  
Sbjct: 323 HFMKTLK----SGGKAAIVVPEGVLF--QTNSAFKQVKQELLENFNLHTILSLPAGVFLP 376

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            + + T +         ER G    +   +       +  K + I D+  ++ +++Y SR
Sbjct: 377 YSGVKTNVLFF------ERSGGTSDVWYYEC--EPEKKLTKNKPITDEHLKEFVELYRSR 428

Query: 460 ENGKFSRMLD 469
           E  + S  + 
Sbjct: 429 ETTERSWTVS 438


>gi|327480083|gb|AEA83393.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 488

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 164/490 (33%), Gaps = 69/490 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +           E  L     
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-------ELEWELMDDNY 53

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSS 122
              +    +    ++    E            NNL   +     +S+   A      F  
Sbjct: 54  RSPIPESCR--WRTWAADPEGMTGDALKDFIDNNLFPQLQNLHEYSNTPAAFVVRSVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++                    N+YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKIQQGVDFNKAQERHEFGNLYEQLLRDLQNAGN--AGEFYTPRP 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V      ++           P +   + DP CGTGGFLT  + H        +  +    
Sbjct: 170 VTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTADDERTLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
              +G E +P  H +    M++  +E      +   I+  +TL++        +R    +
Sbjct: 220 ASIYGVEKKPLPHLLATTNMILHGIE------VPNQIRHDNTLARPLISWGPKERVDCIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ + + L+     GGRA
Sbjct: 274 ANPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMHLLK----EGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+VL    LF     S    I+  LL    +  IV LP  +F   T I T L   +    
Sbjct: 318 AVVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTP 374

Query: 416 EERRGKVQLIN-----ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            +   +V             ++  R    +   + +       D + +R   +F+  +  
Sbjct: 375 TK---EVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSETDGFAARVENEFAWKVSL 431

Query: 471 RTFGYRRIKV 480
                R   +
Sbjct: 432 DELKARNWNL 441


>gi|258546308|ref|ZP_05706542.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC
           15826]
 gi|258518452|gb|EEV87311.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC
           15826]
          Length = 536

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 202/565 (35%), Gaps = 62/565 (10%)

Query: 1   MTE--FTGSAASLANFIWKNA-EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR- 56
           MTE  FT    +L + +         G+    +F  +I    L + L    +     +R 
Sbjct: 1   MTEQHFTEQTKALIDSLKTICVNYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 57  ---EKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
              ++ + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  KKPDELIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEVIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+         S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEAVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E E       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +  +        + +IR  L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLK----ENGKAAIVLPTGFITAQS--GIDKKIREHLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++  + ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKNKVVLIDASGLGEKIKDGKNQKTVLSRAEEQKI 448

Query: 453 LDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            + +  ++    FS ++ Y     +   +         +D   ++  E      + S   
Sbjct: 449 CNTFTHKQVVEDFSVVVSYDEIKAKNYSLSAGQYFEVKIDYVDISADEFAQKMAEFSADL 508

Query: 512 QSFWLDILKPMMQQIYPYGWAESFV 536
              + +  + + ++I        F 
Sbjct: 509 DKLFTESAE-LEREIKDKLQRLQFN 532


>gi|330937291|gb|EGH41302.1| Type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 313

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 116/316 (36%), Gaps = 32/316 (10%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +                L  +GQE   ET  +C+  + +  L+       +     
Sbjct: 1   MFVQSAKFKDAHAKQLGSKGDLPIYGQEKMAETRRLCLMNLAVHGLDG------NIGQTY 54

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           GST + D     R  Y L+NPPF           E E   G+  R+  G+P   + +  +
Sbjct: 55  GSTFTNDQHKTLRADYILANPPFNISDW------EGEKLKGD-PRWAHGIPPKGNANYAW 107

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H+  +L    +  GRA +VL++  +   ++G  E  IR+ ++  D++E +VALP  LF
Sbjct: 108 LQHILARL----SSRGRAGVVLANGSMSTQQSG--EDIIRQSMVIKDVVECMVALPGQLF 161

Query: 399 FRTNIATYLWILSNRK------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
             T I   LW LS  K        +R  ++  I+A     +     +K+    +D    I
Sbjct: 162 SNTQIPACLWFLSKDKRIGPNGKTDRSSQILFIDARK--ATSGRISRKQVEFTEDDMEGI 219

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
              Y    N  FS        GY  I           + K G           +      
Sbjct: 220 AQTYHRWRNTVFS-----DGEGYEDIPGFCYSASFEDVQKHGFILTPGRYVGAESVEEDD 274

Query: 513 SFWLDILKPMMQQIYP 528
             + D L  +++Q+  
Sbjct: 275 QLFSDKLNHLIEQLGE 290


>gi|300114984|ref|YP_003761559.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299540921|gb|ADJ29238.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 483

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 173/500 (34%), Gaps = 64/500 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLG 92
             L+ L+  LE  R+   E         ID        +  K A  +F +    +   L 
Sbjct: 33  LFLKYLDD-LEQERAMEAELKGQPYTFIIDEAHRWSRWAAPKQADGAFDHDQALTGDDL- 90

Query: 93  STNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                  L  Y+  F       D  +    +  F    ++ +    L  + +    +   
Sbjct: 91  IDYVNQELFPYLQGFKQRATAPDTIEYKIGEI-FGEIKSKFQSGYSLRDVLELVDQLHFR 149

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +S++YE  I+  G+       ++ TPR ++     ++           P + 
Sbjct: 150 -SQKEKHELSHLYETKIKNMGN-AGRNGGEYYTPRPLIRALIQVI----------QPKIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +YD   G+ GFL +A  H+    D  S  +       +G+E +   + + +  M++  
Sbjct: 198 ERIYDGAVGSAGFLCEAYEHLRPQADSVSQLQTLQSRTFYGKEKKSLAYVIGIMNMILHG 257

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+      +   +      +D     RF   L+NPPFG K  K+               
Sbjct: 258 IEAPNILHTNTLAEN----IRDWQEKDRFEVILANPPFGGKERKEVQQN----------- 302

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 K  + + LFL H    L+     GGRAA+V+ ++ L N    S    +R+ LLE
Sbjct: 303 ---FPIKTGETAFLFLQHFIKTLKA----GGRAAVVIKNTFLSNSDNAS--RALRKELLE 353

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  +  ++  P   F    + T +          R      +    L         K   
Sbjct: 354 SCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAPTRR------VWYYQL--DPGRSLGKTNP 405

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           +ND+  ++ L +  S  +   S  ++ +      + +   ++     ++T L   EA I 
Sbjct: 406 LNDEDFKEFLALQPSFADSAKSWSVEVKDINPDTVDLS--VKNPNKPEETPLRESEAIIA 463

Query: 504 WRKLSPLHQSFWLDILKPMM 523
                    +  L+ ++ M+
Sbjct: 464 EMAALDAESAKILEDIRGML 483


>gi|56418878|ref|YP_146196.1| type I restriction modification system M subunit [Geobacillus
           kaustophilus HTA426]
 gi|56378720|dbj|BAD74628.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Geobacillus kaustophilus
           HTA426]
          Length = 484

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 176/489 (35%), Gaps = 75/489 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+          RE+  A  G   +   F     +  ++  ++  +        
Sbjct: 35  LLFIKGLDEV-----ETQREQEDALLGIESE-RIFPPDKQHLRWSKFKHFEAAHMYDVVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   N ++ +  +     I  +    +L KI      I +           +
Sbjct: 89  NEVFPFIKNLHGNRESAYAKY-MGDAIFMIPTPQMLVKIVDGIDRIPMK----DRDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++H+   L+           P     + DP  G+ 
Sbjct: 144 LYEYLLSKIATAGTN--GQFRTPRHIIHMMVELM----------KPTPEDIIVDPAAGSA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++    S   +   L       + +G +++     +    M++  +E     
Sbjct: 192 GFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMDRTMLRIGAMNMMLHGIE----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      ++   L+NPPF  K   D DAV  +            + K
Sbjct: 247 --NPNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLDYDAVSNDLLK---------VVK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +     +IR+ ++EN  +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCACIVPDGVLF--GSSKAHKDIRKEIVENHKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR  I ++  
Sbjct: 348 ISMPSGVFKPYAGVSTAIMIFTK----TGLGGTDQVWFYDMKADGYSLDDKRTPIEENDI 403

Query: 450 RQILDIYVSRENGKFSRM----------------LDYRTFGYRRIKVLRPLRMSFILDKT 493
             I+  + +RE  K  +                  D     Y+ I+       +  +   
Sbjct: 404 PDIIARFHNREAEKERKRTEQSFFVPVEEIRENDYDLSINKYKEIEYEEVQYEAPSVIIK 463

Query: 494 GLARLEADI 502
            +  LE DI
Sbjct: 464 RIKELENDI 472


>gi|327540217|gb|EGF26806.1| type I restriction-modification system, M subunit [Rhodopirellula
           baltica WH47]
          Length = 497

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 52/355 (14%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +A+     F      ++   L+ ++    + I+ + ++    V  ++YE +++   S 
Sbjct: 99  NPRAVVIRSAFDDANQYMKNGTLMRQVINKINEIDFN-NSKDRHVFGDVYEQILKDLQSA 157

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A +F TPR V                + +P +   + DP CGTGGFLT  ++++ D
Sbjct: 158 GN--AGEFYTPRAVTQFMVQ----------QTAPQLGERVLDPACGTGGFLTAVIDYIRD 205

Query: 230 CGSH-----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                    H+       HG E +   H +C   +L+  +      D+   I+  +TLS+
Sbjct: 206 EAKQVKSPTHEEELQASIHGVEKKHLPHILCTTNLLLHGI------DVPSQIRHDNTLSR 259

Query: 285 ---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              D     R    ++NPPFG     ++D +E            P   +  + + LFL+ 
Sbjct: 260 PLRDYGPKDRVDVIVTNPPFGG---MEEDGIELNF---------PKAFQTRETADLFLVL 307

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FR 400
           + + L+     GGR AIVL    LF       ++ I+  LL+   +  IV LP  +F   
Sbjct: 308 IMHLLK----EGGRGAIVLPDGTLF---GEGVKTRIKERLLDECNLHTIVRLPNGVFNPY 360

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDL----WTSIRNEGKKRRIINDDQRRQ 451
           T I T L   +      ++   + I   D          N+ K  RI   D  ++
Sbjct: 361 TGIKTNLLFFTKG-PTGKKDCTKDIWFYDHPYPPGAKSYNKTKPIRIEEFDAEKK 414


>gi|167767091|ref|ZP_02439144.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1]
 gi|167711066|gb|EDS21645.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1]
 gi|291559574|emb|CBL38374.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 547

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 83/518 (16%), Positives = 178/518 (34%), Gaps = 62/518 (11%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK------------- 74
            +++  +I    L + L            +K         DL    +             
Sbjct: 30  SSEYK-IITEIFLYKFLNDKFLYEVKQADKKLKDSENVEQDLNDMSEDDYEMLMMLLPPE 88

Query: 75  --VAGYSFYNTSEYSLST------------LGSTNTRNNLESYIASFSDNAKAIFEDF-- 118
                   + +  ++                  +N   ++ S      D  +   E    
Sbjct: 89  TAQLKRKHFISYLFNHKNDEKFNELFDSTLWDISNINLDVFSVSTGSGDKIRLFDEHLSQ 148

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           + + +  R +    +      FS  E+          + I+E+LI+ +  +  + A ++ 
Sbjct: 149 NVTESNRRSDFCKAMIDKLVTFSFSEVFSQKY--DFFATIFEYLIKDYNKDFGKYA-EYY 205

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   +++               T+YDP  GTG  +    + + +         
Sbjct: 206 TPHSIASIIARIMVP--------KGTQNVTVYDPAAGTGTLVLALAHEIGENNCTIYTQD 257

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           I     + L        +   L   +  D          Q +          +F Y +SN
Sbjct: 258 ISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNHQKN-------GLMKFDYIVSN 310

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGG 354
           PPF   +  ++D +  ++         P +P     SM     FL H+   ++      G
Sbjct: 311 PPFNVDFSDNRDTLAGDNYKERFWAGVPNVPNKKKDSMAIYQMFLQHIIFSMK---ENSG 367

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAAIV+ +  L    A      IR ++++  ++  +V++P+++F  T     +  L N K
Sbjct: 368 RAAIVVPTGFL--TAATGIPKRIREYIVKERMLRGVVSMPSNIFATTGTNVSVIFLDNSK 425

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
              +  K  L++A+ L T ++ +GK +R I++ ++   I++ + + EN   FS ++DY  
Sbjct: 426 ---KYDKAILMDASKLGTKVKVDGKNQRTILSFEEIENIINTFNNLENKEDFSVVVDYDK 482

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
              ++            +    L + E      + +  
Sbjct: 483 IEQKKYSFSAGQYFEVKIKYIELTQEEFKTKMTEYTEK 520


>gi|158521272|ref|YP_001529142.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510098|gb|ABW67065.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 172/516 (33%), Gaps = 51/516 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57
           MT            I KNA D     +  D    +  L     L+  + A          
Sbjct: 1   MTSKIDHRRQEVQQIVKNACDQLNQ-EGVDARNYVEQLAWLFFLKAFDEAETRREQEADF 59

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              A+G       ++   A  + +                 + +       D     F  
Sbjct: 60  DDTAYGRRLSGQYAWSSWARNTDHPDQMLEFVDGKLWIKLTSPDPQKGLGDDLLAQRFRR 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F +      +     ++ +    +    +T    V+S IYE L++R  ++ +  A +F
Sbjct: 120 I-FDNVRNYCRRGISFARVVQQVDKLHFSSET-DVIVLSEIYEDLLKRVAADSAGYAGEF 177

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSH 233
            T R ++     ++           P     +YDP  GT GFL +A +++       G  
Sbjct: 178 YTQRHIIRAMVEVV----------QPKPKDKVYDPCFGTAGFLGEAADYIRRNNTLSGPQ 227

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G E++P T+ +    M++  +E       +         S+++    R+ 
Sbjct: 228 LDALQKKTFYGLEIKPLTYLLGTMNMILHGIEGANLELTNTLEIH----SQNVGEKARYD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPP+G K             +G    F     + S    LFL H+   L      G
Sbjct: 284 VILSNPPYGGKMA-----------SGMQTNFR---VRSSATECLFLQHIMANL----AKG 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           GRA +V+    LF G     + ++R+ LLE   +  I++LP   F   T + T +     
Sbjct: 326 GRAGVVIPEGVLFRGGP---DQKVRKELLEQFNVHTILSLPAGCFLPYTGVKTNVIFFDR 382

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K +     V     T+    +++    R+ I  DQ    L  +  R+ G  S  +    
Sbjct: 383 PKDDSGTKSVWFCELTNDGFELKST---RKPIEGDQLPDFLAKWEKRKAGDNSWTVPIEK 439

Query: 473 F--GYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  +    P R      +  L  +++     +
Sbjct: 440 IIEQGYDLSAKNPNRKDEYEHRPALELVQSIKAKEE 475


>gi|313500655|gb|ADR62021.1| HsdM [Pseudomonas putida BIRD-1]
          Length = 489

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 164/493 (33%), Gaps = 75/493 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +          RE        
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDD---------RELEWELMDD 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSS 122
           N            ++    E            NNL   +     +S+   A      F  
Sbjct: 52  NYKSPIPDSCRWRTWAADPEGMTGDALKDFIDNNLFPQLQNLHEYSNTPSAFVVRSVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++                    N+YE L+R   +  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRDLQNAGN--AGEFYTPRP 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V      ++           P +   + DP CGTGGFLT A+ H        +  +    
Sbjct: 170 VTEFMVRMV----------DPKLAEKVMDPACGTGGFLTCAIEHKRSRYVKTAEDERTLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +    M++  +E      +   I+  +TLSK        +R H  +
Sbjct: 220 ASIFGVEKKPLPHLLATTNMILHGIE------VPSQIRHDNTLSKPLISWGPSERVHCIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LFL+ +   L+     GGRA
Sbjct: 274 ANPPFGG---MEEDGIETNF---------PAAFRTRETADLFLVLIMQLLK----DGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+VL    LF     S    I+  LL    +  IV LP  +F   T I T L   +    
Sbjct: 318 AVVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTP 374

Query: 416 EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRR-------QILDIYVSRENGKFSRM 467
            ++      +   +  + +      K R +  ++            D + +R    F+  
Sbjct: 375 TKQ------VWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAWQ 428

Query: 468 LDYRTFGYRRIKV 480
           +       R   +
Sbjct: 429 VSVEELQARNWNL 441


>gi|323139525|ref|ZP_08074571.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242]
 gi|322395204|gb|EFX97759.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242]
          Length = 717

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 144/405 (35%), Gaps = 56/405 (13%)

Query: 36  LPFT----LLRRLECALEPTRSAV-------REKYLAFGGSNIDLESFVK-VAGYSFYNT 83
           LP       L+ L+  LE  R           +  +       D  +  + + G    + 
Sbjct: 45  LPLLTWIMFLKFLDD-LEQQREEEAALSGKKFKAAIEAPYRWRDWAADPQGITGDELLSF 103

Query: 84  SEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
                +          L +Y+ S S    DN + +     F     R++   LL  I   
Sbjct: 104 INAEEAVRADGQKGPGLFAYLRSLSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIVNK 162

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             GI           +  +YE ++R       +   +F TPR VV     +         
Sbjct: 163 VGGIHFTSSD-ELHTLGALYESMLREMRDAAGDS-GEFYTPRAVVRFMVEVT-------- 212

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCV 256
              P +  T+ DP  GTGGFL +A NH+          K        G E +   + +C 
Sbjct: 213 --DPRLGETVLDPASGTGGFLVEAYNHLEKQVKTVADRKRLQNDTISGCEPKSLPYLLCQ 270

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +L+  L++      +           ++   +R    L+NPPFG            E 
Sbjct: 271 MNLLLHGLDAPQIDPGNALR----FKLSEIGEKERVDVILTNPPFGG-----------EE 315

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR---AAIVLSSSPLFNGRAGSG 373
           + G  G F P   + ++ ++LFL  +  KL+  P   GR   AA+V+    L    +   
Sbjct: 316 EKGIQGNF-PEDRQTAETALLFLQLIMRKLKRQPTLAGRPARAAVVVPHGSL---SSPGV 371

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
              IR  LL +  I AIV LP ++F   T+I + +      +  +
Sbjct: 372 AKRIRETLLGDFNITAIVRLPHNVFAPYTDIQSNVIFFERGEPTQ 416


>gi|91217329|ref|ZP_01254289.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
 gi|91184437|gb|EAS70820.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
          Length = 479

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 86/466 (18%), Positives = 161/466 (34%), Gaps = 76/466 (16%)

Query: 38  FTLLRRLECALEPTRSAVRE------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              ++      E     +        + L +     D E     A   F  T  +     
Sbjct: 34  MLFMKIFADKEEEWEITIDNYESPIPENLKWQNWAADDEGLTGDALMDFIETDLFP---- 89

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                  NL+  I+  +   +A+F+D     T   ++   L  ++    + I+ +  T  
Sbjct: 90  ----ALKNLDITISPQARIIRAVFDD-----TYNYMKNGTLFRQVINVINEIDFNNST-D 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             + +++YE +++   S     + ++ TPR V      ++          +P +  ++ D
Sbjct: 140 SHLFNDLYETILKELQSAG--SSGEYYTPRAVTQFMVDMV----------NPQLGESVLD 187

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P CGTGGFLT  ++HV           +L     G E +P  H +C   +++   +    
Sbjct: 188 PACGTGGFLTCTIDHVRAQVKDATDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDLPVV 247

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           R  +   +       D  T  +    LSNPPFG     ++D  E            P   
Sbjct: 248 RRDNLLSK----PYADWGTKDKLDIILSNPPFGG---VEEDGTETNF---------PAKF 291

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL  +   L+      GR AIVL    LF       ++ ++  LL+   +  
Sbjct: 292 RTKETADLFLALIIKLLK----NKGRCAIVLPDGTLF---GEGMKTRLKEELLDKCNLHT 344

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           IV LP  +F   T I T L               + +   +                   
Sbjct: 345 IVRLPNGVFNPYTGIKTNLLFFEKGTP------TKEVWYYEH--PYPKGAVSYNKTKPIH 396

Query: 449 RRQIL---DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++       + +RE+ KFS+          ++ +    +  + LD
Sbjct: 397 IKEFDVEKAWWNNREDEKFSK-------NAWKVSIEEIKKRGYNLD 435


>gi|323143494|ref|ZP_08078177.1| putative type I restriction-modification system, M subunit
           [Succinatimonas hippei YIT 12066]
 gi|322416779|gb|EFY07430.1| putative type I restriction-modification system, M subunit
           [Succinatimonas hippei YIT 12066]
          Length = 545

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 67/482 (13%), Positives = 162/482 (33%), Gaps = 33/482 (6%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
              L   +E T    RE  + F     + ++F K+   +    +  +       N  ++ 
Sbjct: 80  YEELCDLMEDTVILNREHLIPFVSQRRNDDNFAKILDSTMEGIASLNQEVFYIVNEDDSR 139

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIY 159
              I   SD                  +K      +  + S               S I+
Sbjct: 140 VPIIHPISDLISG-----------GATKKNAFCKSLIDDISSFSFETIFDAGYDFFSTIF 188

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L++ + S       ++ TP  V ++   LL+D               +YDP  GTG  
Sbjct: 189 EYLLKDYNSNGGGTYAEYYTPHSVANIMARLLVDDGKD------YRSMKIYDPAAGTGTL 242

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L    + + +             + Q++  ++  + +  +++  +       +  N    
Sbjct: 243 LIALAHAIGE--------RKCAVYTQDISEKSSTMLMLNLILNGMAESLTHVIKGNTMTH 294

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                +    K+F + +SNPPF   +   ++ ++            P +P     SM   
Sbjct: 295 PFHKDENGKLKQFDFVVSNPPFKLDFSDYQNQLKTNDPFKRFFAGVPKIPNKKKESMEIY 354

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +     +       GR AIV+ +  L          +IR++L++N  ++ +V++P+++F 
Sbjct: 355 LCFFQHVIASIRDAGRGAIVVPTGFLTAQS--GIPLKIRQYLVDNKFLKGVVSMPSNIFA 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-S 458
            T     +  +              I+A+ L   I++   K+ ++ +    +I+  +  +
Sbjct: 413 NTGTNVSVVFIDK----AGVNNPIFIDASKLGDEIKDGKNKKTVLKNVDIEKIVSTFHDA 468

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +   + S +                      ++   +   E +   ++ +    + + + 
Sbjct: 469 KAVDELSVLPSLDDIKSNNYSFSAGQYFEVKIEHIDITEEEFNQKIKEYTETLDTLFAEG 528

Query: 519 LK 520
            +
Sbjct: 529 KE 530


>gi|298369796|ref|ZP_06981112.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281256|gb|EFI22745.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 432

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 151/400 (37%), Gaps = 42/400 (10%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
              + I+E+LI+ + S       ++ TP  V  +   +L+  +      S      +YDP
Sbjct: 58  DFFATIFEYLIKDYNSNSGGTYGEYYTPHAVARIMADILVPAEVRGQIRSVD----VYDP 113

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L +  + + +         I       L        +   L   +  +     
Sbjct: 114 SAGSGTLLMNVAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSLNNVVHGNTILSP 173

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +     G          K+F + +SNPPF   +   +D +E E       RF  G+PK  
Sbjct: 174 AHKDASG--------RLKKFDFIVSNPPFKLDFSAYRDQLEGEENRE---RFFAGIPKTP 222

Query: 333 DGS---------------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           +                 +LF+ H+   L+      G+AAIVL +  +        +  I
Sbjct: 223 NHEDKIKEKESRKKMPIFLLFIQHILFSLK----ENGKAAIVLPTGFITAQS--GIDKRI 276

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R +L+EN ++  +V++P+++F  T     +  +        + +V LI+A+ L   I++ 
Sbjct: 277 REYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----ANKDEVVLIDASGLGEKIKDG 332

Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
             ++ +++  + ++I + +  ++    FS ++ Y     +   +         +D   ++
Sbjct: 333 KNQKTVLSRAEEQKICNTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDIS 392

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
             E      + S      + +  + + ++I        F 
Sbjct: 393 ADEFAQKMAEFSADLDKLFTESAE-LEKEIKEKLQTLKFN 431


>gi|261867041|ref|YP_003254963.1| hypothetical protein D11S_0333 [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412373|gb|ACX81744.1| hypothetical protein D11S_0333 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 534

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 76/517 (14%), Positives = 180/517 (34%), Gaps = 35/517 (6%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE  FT    +L + +              +F  +I    L + L    +     + E+
Sbjct: 1   MTELYFTEQTKTLIDSLKTICAHYGLGNDGNEFK-IISQAFLYKFLNDKYDFEVKKILEE 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +D+E   K A     ++  Y        +     +  +   + +   +F   
Sbjct: 60  KPGEPMEFVDMEIQSKTAVLKPEHSIRYLSQRQNDADFAKLFDDTLIDIAAHNAEVFAVK 119

Query: 119 D--------FSSTIARLEKAGLLYKICKNFSG--IELHPDTV---PDRVMSNIYEHLIRR 165
                    F      +         C+       +   + V        + I+E+LI+ 
Sbjct: 120 TEGGAKIVLFERISQYIADENRRDDFCRALISKLADFSFEAVFAQKFDFFATIFEYLIKD 179

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  +
Sbjct: 180 YNSNSGGKYAEYYTPHAVARIMADILVPQDVRGQIRSVD----VYDPSAGSGTLLMNVAH 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +           + + Q++  ++  +    +++  L       +  N          
Sbjct: 236 AIGE--------DKCMIYTQDISQKSSNLLRLNLVLNNLVHSLNNVIQGNTILSPYHKDK 287

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +   K+F + +SNPPF   +   +D ++            P +       M         
Sbjct: 288 VGRLKKFDFIVSNPPFKLDFSDFRDQLDSAENRERFFAGIPKIKAKDKDKMEIYQLFIQH 347

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +       G+A+IVL +  +        + +IR +L+EN +   +V++P+++F  T    
Sbjct: 348 ILFSLKENGKASIVLPTGFITAQS--GIDRKIREYLVENKMFAGVVSMPSNIFATTGTNV 405

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKF 464
            +  +        + +V LI+A+ L   I++   ++ +++ ++ ++I   +  ++    F
Sbjct: 406 SILFIDK----ANKDQVVLIDASGLGEKIKDGKNQKTVLSREEEQKICQTFTDKQVVENF 461

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           S ++ Y     +   +         +D   ++  E +
Sbjct: 462 SVVVGYDEIQAKNYSLSAGQYFEVKIDYVDISADEFE 498


>gi|260425081|ref|ZP_05734132.2| type I restriction enzyme M protein [Dialister invisus DSM 15470]
 gi|260404084|gb|EEW97631.1| type I restriction enzyme M protein [Dialister invisus DSM 15470]
          Length = 561

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 83/508 (16%), Positives = 172/508 (33%), Gaps = 50/508 (9%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
            +++  +I    L + L            E          DL +    +      +   +
Sbjct: 47  SSEYK-IITEVFLYKFLNDKFLYEVRQADEGLKNSTNIEADLSAMDDESYDFLLASLPPT 105

Query: 88  LSTLGSTN------TRNNLESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNF 140
            + L   +       R N + +   F D    I   + D  S     E    L+     F
Sbjct: 106 TAQLKKEHFISYLFNRKNTDKFNELFDDTLIDIANFNIDVFSVKTGSEDKIRLFDAISVF 165

Query: 141 SGIELHPDTV-------------------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                                             + ++E+LI+ +  +  + A ++ TP 
Sbjct: 166 VTETNRRSDFCRAIIDKLVAFSFAEAFAQKYDFFAAVFEYLIKDYNKDFGKYA-EYYTPH 224

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +  +   +++               T+YDP  G+G  +    + + +         I  
Sbjct: 225 SIASIIAKIMVP--------DGAQNVTVYDPAAGSGTLVLALAHEIGEDNCTIYTQDISQ 276

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
              + L        +   L   +  D          Q   L+K      +F Y +SNPPF
Sbjct: 277 KSNEFLRLNLILNNLVHSLGNVVHGDTLL-------QPEHLNKQKNGLMKFDYIVSNPPF 329

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
              +  ++D +  E          P +PK    SM   +     +       G+A IV+ 
Sbjct: 330 NMDFSDNRDTLAGEKYKERFWAGVPNIPKKKKDSMDIYLLFLQHILFSLKDTGKAGIVVP 389

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +  L    A   + +IR  ++   ++  ++++P+++F  T     +  L  +K   ++ K
Sbjct: 390 TGFLTT--ATGIQKKIREKIISEKMLRGVISMPSNIFATTGTNVSIMFLDAQK---QQDK 444

Query: 422 VQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYV-SRENGKFSRMLDYRTFGYRRIK 479
           V L++A+ +   I+ +GK +R ++ D +  QI+  +    E   FS M+        +  
Sbjct: 445 VMLMDASSMGQKIKVDGKNQRTVLRDFEIEQIISTFNCEIETDDFSVMVSLDQISKNKFS 504

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKL 507
           +      +F L    ++  E D   ++L
Sbjct: 505 LSAGQYFTFKLPYVEISEAEFDKEMQRL 532


>gi|313634896|gb|EFS01302.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 251

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 21/256 (8%)

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
               ++ G KR  I+++Q   I+ +Y   +  K  ++ D   FG+ +I V RPLR++F+L
Sbjct: 2   RKMKKSMGNKRNEISEEQIMDIVSLYNETKQNKKIKIFDNEDFGFHKITVERPLRLNFML 61

Query: 491 DKTGLARLEADITWRKLSPLHQ-------------SFWLDILKPMMQQIYPYGWAESFVK 537
            K  + R++ +  ++ L+  ++             +    I+  +   +         + 
Sbjct: 62  SKERIERVKHEKVFQNLATSNKKGEAKEKQIEEGIALQQRIINTLNTNVSNEIIKNREIF 121

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
                   K   +  + + + A +N    KD  AD           DT L +YE++P  +
Sbjct: 122 TKKLKEIFKKEGITVTSTVLKAILNGLSEKDETADICMRNKKTVEVDTELRDYESIPLKK 181

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            IQ YF  EV PHVPDA+ID+           +VGYEI F R FY+Y P R  ++I  E+
Sbjct: 182 DIQKYFEIEVLPHVPDAWIDET--------ATKVGYEIPFTRCFYEYTPIRSSKEILKEI 233

Query: 658 KGVEAQIATLLEEMAT 673
           + +EA++A  L+++  
Sbjct: 234 QKLEAEVAEQLKKVFG 249


>gi|325911636|ref|ZP_08174044.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 143-D]
 gi|325476622|gb|EGC79780.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 143-D]
          Length = 542

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/536 (12%), Positives = 172/536 (32%), Gaps = 53/536 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAV-----REKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L          +     + +      +++  +    +      
Sbjct: 28  DGNEYK-IITQVFLYKFLNDKFGYEIKKINPVIAQAEKWEKAYASLSEDEITDLLDELSP 86

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKI-- 136
           +        L S       +       D+      + +   FS+      K  L  K+  
Sbjct: 87  DIPSLRPEYLISNLWNQQTKGDFDLIFDSTMKSIANDNLEIFSTQTTEKTKIPLFEKLTP 146

Query: 137 ---------------CKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                                         +    + I+E+LI+ + +       ++ TP
Sbjct: 147 YVTDDAQRAPFARALVDKLVNFSFEAAFNENYDFFAAIFEYLIKDYNTAGGGKYAEYYTP 206

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  +   LL+  +  L          +YDP+ GTG  L           SH       
Sbjct: 207 HAIATIMARLLVGDNTDLHDIE------VYDPSAGTGTLLIAL--------SHQIGQDRC 252

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNP 299
               Q++   ++ +    +++  L S     +  +        S D    ++F Y +SNP
Sbjct: 253 TIFAQDISQRSNKMLKLNLILNGLVSSLDHAVQGDTLTHPYHKSNDGKELRQFDYVVSNP 312

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF   +  +++ +             P +P      M         +       G+ AIV
Sbjct: 313 PFKMDFSDNREELASMP--VRFWGGVPKIPAKKKEKMAIYTLFIQHVINSIKSNGKGAIV 370

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           + +  L   +    E+++  ++++  +I   +++P+++F  T     +      +  +  
Sbjct: 371 VPTGFLTVKK--GVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSVLFFDKSQEHD-- 426

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRMLDYRTFGYRRI 478
            KV LI+A+ +    ++   ++  +  ++  QI+  +  ++    FS ++ Y     ++ 
Sbjct: 427 -KVVLIDASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVSYDEIKEKKY 485

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW---LDILKPMMQQIYPYGW 531
            +         ++   L   E     +      Q  +     +   +M+Q+    +
Sbjct: 486 SLAAGQYFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQLKKVKY 541


>gi|254478539|ref|ZP_05091914.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035547|gb|EEB76246.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 476

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 87/420 (20%), Positives = 149/420 (35%), Gaps = 56/420 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              LR L+   E       E       +       +       +  ++   +        
Sbjct: 20  LLFLRFLDAQEE-------EWEAQAQIAGRPYTPIIDSEYRWRHWATKDWPADELLAFVH 72

Query: 98  NNLESYIASFS-DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             L  Y+ S   D  +           +        L  + +  + I  H        +S
Sbjct: 73  GRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQD-DIFTVS 131

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +YE L+RR G+  +  A +F TPR VV     L+           P +   +YDP CGT
Sbjct: 132 QVYEELLRRLGN-ENRLAGEFYTPRPVVRFVVELV----------DPQIGEAVYDPACGT 180

Query: 217 GGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GFL +A   +         H+I       GQE +P    + +  M++  +       + 
Sbjct: 181 CGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMVLHGVT------VP 234

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           + +++ +         +RF   ++NPPFG          E  H             + + 
Sbjct: 235 RVMRRNTLEENIRNVSERFDVVVTNPPFG--------GTEGRHIQQNFP------IQSNA 280

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL H+  KL+  P  G R  +V+    LF G A    +E++R LLE   +  +V+L
Sbjct: 281 TELLFLQHIMKKLK--PRDGARCGMVVPEGTLFRGGA---FAEVKRDLLEQFNLHTVVSL 335

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQ 451
           P   F   +++ T L         ER G  + I   +L       +  K + I D+   +
Sbjct: 336 PPGTFAPYSDVKTALIFF------ERPGPTKEIWYYELPLPEGLKKFSKGKPIQDEHFEE 389


>gi|198282372|ref|YP_002218693.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246893|gb|ACH82486.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 484

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 163/461 (35%), Gaps = 65/461 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---- 93
              L+ L  ALE  R+   E  L        LE   +   ++   T++  +    +    
Sbjct: 32  LLFLKYL-DALEQDRA--MEAELEGRPYTFILEDAFRWEHWAAPKTADGRMDHHKAMSGD 88

Query: 94  ---TNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
                    L  Y++ F      S+  +    +  FS    +++    L +I +   G+ 
Sbjct: 89  DLRDFVNIRLFPYLSGFKRRATGSNTIEYKIGEI-FSEIKNKIQSGYNLREIVEIIDGLR 147

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
               T     +S++YE  I+  G+       ++ TPR ++     ++          +P 
Sbjct: 148 FRSQTEK-HELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAIVQVV----------APK 195

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGML 260
           +   +YD   G+ GFL +A +++        S  +       +G+E +   + + +  M+
Sbjct: 196 VGEKIYDGAVGSAGFLCEAFDYLKAQPGLTTSDMQTLQERTFYGKEKKSLAYVIAIMNMI 255

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +++      +   +       D+    R    L+NPPFG K  K+            
Sbjct: 256 LHGIDAPNIVHTNTLAEN----LMDIQPKDRVDVVLANPPFGGKERKEVQQN-------- 303

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K  + + LFL H    L+     GGR  +V+ ++ L N    S    +R+ 
Sbjct: 304 ------FPIKTGETAFLFLQHFIRMLKA----GGRGGVVIKNTFLSNTDNAS--VSLRKL 351

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  +  ++ LP   F    + T +          +      +    L  +      K
Sbjct: 352 LLEDCNLHTVLDLPGGTFQGAGVKTVVLFFDKGAPTRK------VWYYQL--NPGRNMGK 403

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
              +ND+   + + +  ++ +   S  +D      R   + 
Sbjct: 404 TNPLNDNDLAEFVALQKTKADSPQSWTVDVSGIDTRTYDLS 444


>gi|218441052|ref|YP_002379381.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173780|gb|ACK72513.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 503

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 174/523 (33%), Gaps = 67/523 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVREKYLAF 62
            +   L ++I    + +          + +        L+ L+      R A   + +  
Sbjct: 11  TTQQGLNSYIKNICDIMRRSNCAGAL-QYVPELSWILFLKILDDT--EQREAEEAEAVGD 67

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKAI---- 114
              +   E +      +   T    L             + +  Y+    D  +A     
Sbjct: 68  RFDDSIAEPYRWRDWAAPQGTQRLKLQMGEMGKFIPFVNDEVIPYLKGLKDKPRATPRQK 127

Query: 115 -FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
              +   +    R++    L  I      I+ + DT     +S +YE L+ + G + +  
Sbjct: 128 IISEVMSNVERVRIDSEANLLDILDKVHEID-YIDTTHIFPISQVYEGLLLKMGEK-NND 185

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR++V     ++          +P +   +YDP CGTGGFL  +  ++ D    
Sbjct: 186 GGQFFTPREIVRAMIKII----------NPKVGEKIYDPACGTGGFLAQSYEYIRDNLGD 235

Query: 234 HKIPPIL------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              P  L        +G+E E   + + +A +++  +  D       N   G     DLF
Sbjct: 236 DITPEQLEPLKLNTFYGREKENLIYPIALANLVLHGI--DLPHLWHGNTLNGEVTYGDLF 293

Query: 288 TGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   L+NPPFG K  K   A                  K S   +LFL H+   
Sbjct: 294 KDAPPLFDIILTNPPFGGKEHKTVQA--------------QFDYKTSATQVLFLQHVIKS 339

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403
           L      GGR  IVL    LF         + +R LL +  +  I++LP   F      +
Sbjct: 340 L----APGGRCGIVLDEGVLFR-TNEKAFVQTKRKLLNDCNLYCIISLPAGTFKAAGGGV 394

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              +   S  +  E   K+   + +D+         KR+ +N     +   ++ SRE   
Sbjct: 395 KANILFFSKGEPTE---KIWYYDLSDI------SVTKRKPLNLSDFEEFFKLFPSREESD 445

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
            S  +       +   +      +   +     +   D+   K
Sbjct: 446 KSWTITREEIEAKNFDLKAVNPNAQSFEDKSTPKELLDLIESK 488


>gi|75909478|ref|YP_323774.1| putative RNA methylase [Anabaena variabilis ATCC 29413]
 gi|75703203|gb|ABA22879.1| Putative RNA methylase [Anabaena variabilis ATCC 29413]
          Length = 479

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 177/498 (35%), Gaps = 60/498 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E        + L     +   E        ++   SE            
Sbjct: 33  MIFLKVFDAREEEY------ELLEDNYKSPIPEGLRW---RNWAADSEGITGDGLLDFVD 83

Query: 98  NNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L   +      + +A+       F      ++   L+ ++    + ++ +      + 
Sbjct: 84  NALFQTLKELRTTATDARGQMIGKVFEDAYNYMKNGTLIRQVINKLNEVDFNKKDQK-KQ 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S IYE +++   S  +  A ++ TPR V       +           P +   ++DP C
Sbjct: 143 FSEIYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPAC 190

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A++++        +P IL     G E +P    +CV  +++  ++       
Sbjct: 191 GTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILHGIDVPSAEHD 250

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      +D    +R    ++NPPFG     ++D +E            P   +  
Sbjct: 251 NTLAR----PLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL+ +A+ L+     GGR AIVL    LF       ++ I+  LL++  +  IV 
Sbjct: 295 ETADLFLVLIAHLLK----EGGRGAIVLPDGTLF---GEGVKTRIKEKLLQDCNLHTIVR 347

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRR 450
           LP  +F   T I T L   +  +  E       I   +  + +      K + I  ++  
Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTET------IWYYEHPYPAGYKSYSKTKPICFEEFA 401

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--DITWRKLS 508
              + + +RE  +F+  +           +         ++   L  + A       +L 
Sbjct: 402 PEQEWWDNREENEFAWQVSIADLKANNYNLDIKNPHKVDVEHADLDEMLAAHQKLMAELG 461

Query: 509 PLHQSFWLDILKPMMQQI 526
            +      ++++ +    
Sbjct: 462 EVRSKLKFELMEALEGNN 479


>gi|320352780|ref|YP_004194119.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121282|gb|ADW16828.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobulbus propionicus DSM 2032]
          Length = 484

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 158/446 (35%), Gaps = 64/446 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNT 96
              L+  +   E     +R+ Y +                +  +   E  L+  G     
Sbjct: 34  MFFLKIFDDR-EKELELLRDDYSS---------PLAPELRWCNWAADEEGLTGEGLLDFV 83

Query: 97  RNNLESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            N L   + +     +  A      F      ++K  L+ ++    +GI+ +       +
Sbjct: 84  NNTLLPRLKNLAVGADRVAALVRTAFEDANNYMKKGTLMRQVINKINGIDFNASD-DRHL 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE L++   S  +  A +F TPR V       +           P +  T+ DP C
Sbjct: 143 FGDIYEKLLKDLQSAGN--AGEFYTPRAVTQFIVEQV----------DPRLGETVLDPAC 190

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFL   + H+       +    +     G E +   H +C+  +++  +      D+
Sbjct: 191 GTGGFLVCTIEHLRRQARTAEDERTIQECFTGIEKKHLPHILCMTNLMLHGI------DV 244

Query: 273 SKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              ++  +T     +D    +R    ++NPPFG     ++D +E            P   
Sbjct: 245 PAGVRHDNTLARPLRDWTRQERVDVIVTNPPFGG---MEEDGIEANF---------PAEF 292

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL+ L   L+     GGRA +VL    LF       ++ I+  LL    +  
Sbjct: 293 RTRETADLFLVLLMKLLK----PGGRAGLVLPDGTLF---GEGVKTRIKETLLTECNLHT 345

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDD 447
           IV LP  +F   T I T L   +  +          I   +  +        K + I  +
Sbjct: 346 IVRLPNGVFNPYTGIRTNLLFFTKGQPTTE------IWYYEHPYPPGAKSYNKTKPIRIE 399

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTF 473
           +       +  RE   F+  +D  T 
Sbjct: 400 EFAPERAWWHKREENAFAWRVDIETI 425


>gi|261855230|ref|YP_003262513.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Halothiobacillus neapolitanus c2]
 gi|261835699|gb|ACX95466.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Halothiobacillus neapolitanus c2]
          Length = 484

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 155/452 (34%), Gaps = 71/452 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L+        A+  +      + I  E++     +  +   + +   +      
Sbjct: 32  LLFLKYLDSL--ERDKAIEAQLEGKTYTPILDEAY----RWDAWAAPKDATGVIDPNAAM 85

Query: 96  --------TRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFS 141
                       L  Y+  F   A           +  F     ++     L +I  +  
Sbjct: 86  TGDDLRDFVDRKLFPYLHGFKQRAAGPNTLEYKIGEI-FGEIKNKIHSGYNLREIIDHID 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +      +    +S++YE  I+  G+       ++ TPR ++     ++          
Sbjct: 145 ELRFG-SQIEKHELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAMVRVV---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETHAVCVA 257
           +P +   +YD   G+ GFL +A +++        +  K       +G+E +   + + + 
Sbjct: 193 APQIGERIYDGAVGSAGFLCEAFDYLKSQPNRTTADIKTLQERTFYGKEKKSLAYVIAIM 252

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E+      +   +       D+    RF   L+NPPFG K  K+         
Sbjct: 253 NMILHGIEAPNIVHTNTLAEN----LADVQDKDRFDIILANPPFGGKERKEVQQN----- 303

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                       +  + + LFL H    L+     GGRAA+V+ ++ L N    S    +
Sbjct: 304 ---------FPIRTGETAFLFLQHFIKLLKA----GGRAAVVIKNTFLSNTDNAS--VSL 348

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLE+  +  ++ +P   F    + T +          +    QL    ++       
Sbjct: 349 RKLLLESCNLHTVLDMPGGTFLGAGVKTVVLFFEKGAPTRQVWYYQLDPGRNMG------ 402

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
             K   +ND    + +++  +  +   S  +D
Sbjct: 403 --KTNPLNDADLAEFIELQKTFADSPKSWRVD 432


>gi|14518368|ref|NP_116851.1| putative hsdm of type i restriction-modification system
           [Microscilla sp. PRE1]
 gi|14485003|gb|AAK62885.1| MS163, putative HsdM of type I restriction-modification system
           [Microscilla sp. PRE1]
          Length = 362

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 141/387 (36%), Gaps = 51/387 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----EKYLAFGGS 65
                +W  A +L G     ++   ILP   ++ L    E     +     +    +  +
Sbjct: 7   DFEKELWDAANELRGAVSENNYKNYILPLVFVKHLSERYEMVHDELDNMLHDPKSDYYTT 66

Query: 66  NID------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           + +       +     +  +F      S   L     +++++  +    D  + +   ++
Sbjct: 67  DNEEISYVLEDQDEYRSRNTFKIPKTASWQYLKDNAEQDDIKVIVDDAFDVMQDLLTAYN 126

Query: 120 --FSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
              ++ + R+       A     I    S  +      P+  ++  IYE+ I RF     
Sbjct: 127 PQLNNLLPRIFVRSELSAKQTGGIINLLSHPKFSEKENPESDILGRIYEYYIGRFAMAEG 186

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            GA  F TP  +V L   LL                 ++DP CG+ G    ++  V + G
Sbjct: 187 SGAGQFFTPGSIVRLLVELLEPYKG-----------RIFDPACGSWGMFVQSLKFVKEHG 235

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  +GQE+  +T  +C+  +++R L  D         + G++L  D F   +
Sbjct: 236 GN---KSDISIYGQEMTAQTLRLCLMNLMLRELSFDI--------KLGNSLLDDKFPDLK 284

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELP 349
             + ++NPPF       +D  E + +      FGP        + + +++    + L   
Sbjct: 285 VDFIIANPPFNVSNWHPEDLPEGDPRL-----FGPKEEFTTDGNANYMWMQTFWHHL--- 336

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +  G A IV+++  + +   G   + 
Sbjct: 337 -SDTGTAGIVMANGAMTSNTKGEKSAR 362


>gi|198282969|ref|YP_002219290.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666304|ref|YP_002425172.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247490|gb|ACH83083.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518517|gb|ACK79103.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 489

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 171/473 (36%), Gaps = 81/473 (17%)

Query: 38  FTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY----- 86
              L+  +        LE    +    +L +     + E     A   F N   +     
Sbjct: 34  MFFLKIFDDREAELMLLEDDYKSPLPNHLRWRAWATNPEGMTGDALADFVNVQLFPYLKE 93

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
            L T G+   R  +   +               F      ++   L+ ++      I+ +
Sbjct: 94  RLPTAGAQGKRAQVVRSV---------------FEDAYNYMKSGTLMRQVINKICEIDFN 138

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++       +IYE ++R   S  +  A +F TPR V       +          +P + 
Sbjct: 139 -NSGDRHTFGSIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRV----------NPRLE 185

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQELEPETHAVCVAGMLIRR 263
            T+ DP CGTGGFLT A++H  +     +      +    G E +   H + V  M++  
Sbjct: 186 ETVLDPACGTGGFLTCAIDHKREHYVKTREDEETLVNTIRGFEKKALPHMLAVTNMILHG 245

Query: 264 LESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +      D   +I+  +T     KD     R +  ++NPPFG     ++D +E       
Sbjct: 246 I------DTPTHIRHDNTLSRPYKDYGNADRVNVIITNPPFGG---MEEDGIENNF---- 292

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                P   +  + + LF+  +   L+      GRAAIVL    LF       ++ +++ 
Sbjct: 293 -----PAHLRTRETADLFMALVIKLLK----DQGRAAIVLPDGFLF---GEGMKTRLKQI 340

Query: 381 LLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEG 438
           LLE   +  IV LP  +F   T I T L   +  K  E       +   +  +       
Sbjct: 341 LLEECNLHTIVRLPNGVFAPYTGIKTNLLFFTKGKPTEH------VWYYEHPYPEGVKNY 394

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            K + +  ++    +  +    +G  +R+   +T    ++ V   +  ++ LD
Sbjct: 395 NKTKPMRFEEFETEIAWWGDEADGFKARV---QTEQAWKVPVADIVARNYNLD 444


>gi|88812208|ref|ZP_01127459.1| Putative restriction modification enzyme M subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790459|gb|EAR21575.1| Putative restriction modification enzyme M subunit [Nitrococcus
           mobilis Nb-231]
          Length = 483

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 154/459 (33%), Gaps = 66/459 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +          +E+ LA    +       ++   S+    E            
Sbjct: 33  LLFLKIFDA---------QEEELALRYDDYQPPIPEELLWRSWAADPEGITGEALLEFVN 83

Query: 98  NNLESYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPD 152
           N L   +         N +       F+     ++   LL ++     +GI+ H      
Sbjct: 84  NALFPQLKRLRATPQTNPRGFVAREVFADAFNYMKNGTLLRQVVNRIEAGIDFH-SAKER 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ +IYE +++   S  +  A +F TPR V      ++           P +   + DP
Sbjct: 143 HLLGDIYEQILKDLQSAGN--AGEFYTPRAVTQFMVDII----------DPQLGEQVMDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFLT  + H+          +        G E +   H +C   ML+  LE    
Sbjct: 191 ACGTGGFLTCTVEHIRKHYVQTVAAEATLQEQVQGFEKKQLPHLLCTTNMLLHGLE---- 246

Query: 270 RDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             +   I+  +T     +D    +R    L+NPPFG     ++D  E            P
Sbjct: 247 --VPTRIRHDNTLARPLRDWGPRERVDAVLTNPPFGG---MEEDGTELNF---------P 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              +  + + LFL  +   L+      GRAAIVL    LF       +++I+  LL    
Sbjct: 293 QATRTRETADLFLQLVIQILKP----NGRAAIVLPDGTLF---GEGVKTKIKEKLLTECN 345

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRII 444
           +  IV LP  +F   T I T L   +  +          +   +  +        K + I
Sbjct: 346 LHTIVRLPNGVFNPYTGIKTNLLFFTKGEPTTE------VWYYEHPYPPGYKSYSKTKPI 399

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
              +       + +R+    +  +           + R 
Sbjct: 400 RITEFDAEKAWWHARKENAQAWRVSIDEIRAGNYNLDRK 438


>gi|32266922|ref|NP_860954.1| type I restriction-modification system [Helicobacter hepaticus ATCC
           51449]
 gi|32262974|gb|AAP78020.1| type I restriction-modification system [Helicobacter hepaticus ATCC
           51449]
          Length = 475

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/530 (20%), Positives = 189/530 (35%), Gaps = 83/530 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           S  ++   +W  A  L        + + +  L     L+      E  R ++ E   +  
Sbjct: 2   SEKAIVAKVWNFATILRDSGVS--YTEYVAQLSYLLFLKM-----ESERESIGE--HSKI 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            ++   E  + + G    +    +L+ L  +                        D  + 
Sbjct: 53  PTSCKWERLINLDGLELESAYNAALAQLAKS---------------EGVIGLVYNDAQNK 97

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I        L+ +  + + + L+ D     V   IYE L+ +  +E   GA  + TPR +
Sbjct: 98  IKEPANLKKLFVLMDSETWLGLNVD-----VKGAIYEGLLAKNATETKAGAGQYFTPRVL 152

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---KIPPIL 240
           +     L+                 + DP CGTGGFL  A   +          K     
Sbjct: 153 IDSIVGLM----------ELKPNMEVCDPACGTGGFLLSAYEAMKAQTKDKEEIKCLRNE 202

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G+++ P   ++C   + +              I+ G +LS+     +RF   L+NPP
Sbjct: 203 RLCGKDITPLVASLCAMNLYLH-----GIGGEGGIIEIGDSLSE--LGNRRFDRVLTNPP 255

Query: 301 FGKKWEKDKDAVEKEHK--NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           FGKK      A   + K    E  R        S+  + FL H+ N L++    GG+AA+
Sbjct: 256 FGKKSATKILAENGKVKSQKDEYNREDF-FATTSNKQLNFLQHIMNLLKI----GGKAAV 310

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF   AG    ++R+ LLE+  +  I+ LPT +F+   +   +       T E 
Sbjct: 311 VLPDNVLFEAGAGE---KVRKKLLEDFNLHTILRLPTGIFYAQGVKANVLFFDKVATSE- 366

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRMLDYRTFGYR 476
               Q +   D+ T++ N       ++ +  R+    +   + EN K S           
Sbjct: 367 -DSTQKVWVYDMRTNM-NLSLVTSPLSAEHLREFESCFCVGAMENRKESERF-------- 416

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                   R   I +     ++  DI W K   L     L   K + +QI
Sbjct: 417 --------RSFSIGEIKKRDKMNLDIFWLKDESLEDLENLPSPKDLSEQI 458


>gi|260579031|ref|ZP_05846931.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602832|gb|EEW16109.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
          Length = 388

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 37/292 (12%)

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRF 292
           P  L  +GQE +  T A+    M++   E       + +I+QG TLS   F      + F
Sbjct: 9   PNGLSIYGQEKDNATWALSRMNMILHGNE-------THDIRQGDTLSDPKFLKGEQLQTF 61

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            Y ++NPPF  K         K   + E GRF G   P   +G   FL+H+   L+    
Sbjct: 62  DYFVANPPFSVKTW-------KNGFDKEYGRFDGFAEPPEKNGDYAFLLHMVKSLK---- 110

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR A++L    LF    G+ E+ IR  L+   LI+AI+ LP +LF+ T I   + ++ 
Sbjct: 111 SDGRGAVILPHGVLFR---GNTEAAIREELIRRGLIKAIIGLPANLFYGTGIPACIIVID 167

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD- 469
            ++   R G + +I+A+  +         +  +     R+I+D Y++ ++  +++RM+  
Sbjct: 168 KKEAANRTG-IFMIDASKGFEK----DGAKNRLRPRDMRKIIDTYLAGDDVERYARMVSL 222

Query: 470 ---YRTFGYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD 517
                      + + R +  S   D   L A L+  I  R L  L + +   
Sbjct: 223 SEISDAKNNYNLNIPRYIDTSEPEDIQDLEAHLKGGIPNRDLDALGEYWDAF 274


>gi|121608004|ref|YP_995811.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121552644|gb|ABM56793.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 485

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 179/508 (35%), Gaps = 75/508 (14%)

Query: 38  FTLLR---RLECALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+    LE  LE TR A      + + +     D+E     A   F +   + +   
Sbjct: 34  LLFLKVFDALEEELELTRGAYHSPIPEPMRWRHWAADVEGMTGDALLDFVDNQLFVVLKN 93

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S +   N   Y+       +++FED         ++   LL ++    +GI+ +  +  
Sbjct: 94  LSADPLRNPRGYV------VRSVFED-----AYNCMKSGHLLRQVVNKINGIDFNRQS-E 141

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               +++YE +++   S  +  A +F TPR V      +           +P +   + D
Sbjct: 142 RHQFNDLYEKILKDLQSAGN--AGEFYTPRAVTQFMVDIC----------NPRLGEVVLD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTGGFL  A+ H+     +     +L     G E +   H +CV  +L+  +E  P 
Sbjct: 190 PATGTGGFLVCAIEHLRKQVRNIADEVMLQSSIRGVEKKHLPHILCVTNLLLHGIE-VPS 248

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + +  N        +D  T  R     +NPPFG   E D                 P   
Sbjct: 249 QIVHDNALMRPL--RDYTTADRVDLVFTNPPFGGMEECDG---------------YPADL 291

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL+ + + L+     GGRAA+VL    LF   A   +  I+  LL    +  
Sbjct: 292 RTKETADLFLVLIKHILKP----GGRAALVLPDGVLFGEGA---KVRIKEQLLAECNLHT 344

Query: 390 IVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL----WTSIRNEGKKRRII 444
           IV LP  +F   T I T L   +             +   +          ++ +  RI 
Sbjct: 345 IVRLPHGVFSPYTGIKTNLLFFTKGTPTTH------VWYYEHLYPPGVKNYSKTQPIRIQ 398

Query: 445 NDDQRR----QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
             D  +       D + +R   + +  +           + +    +  +DKT     + 
Sbjct: 399 EFDHEKAWWGNEADGFAARVENEHAWKVGIDAIRAAHYNLDQK---NPHVDKTACYDPDT 455

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYP 528
            +              + LK ++ Q   
Sbjct: 456 LLADYARLQAEAQTLRNQLKDILSQSLA 483


>gi|227820720|ref|YP_002824690.1| N-6 DNA methylase [Sinorhizobium fredii NGR234]
 gi|227339719|gb|ACP23937.1| N-6 DNA methylase [Sinorhizobium fredii NGR234]
          Length = 511

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 196/567 (34%), Gaps = 87/567 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A ++   +W+    L        + + +   T L  L+   E  R +            
Sbjct: 2   NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRESGS------LPET 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------------NNLESYIASFSDNAKAI 114
           +  E  V+  G +       +L TLG+ +TR            +N          +A+ +
Sbjct: 54  MRWEDLVQANGLAKLELYRRTLVTLGTVSTRLGKDDALVLPPGDNATPDERKRYVDARPL 113

Query: 115 FEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +     F +    + +   L  +      ++   +        ++YE L+++   E   
Sbjct: 114 PDMVQEIFDNASTFIREPQNLTTLVTAIDELDWFSE--ERDQFGDLYEGLLQKNAEETKR 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-- 230
           GA  + TPR ++ +   L+           P     + DP  GTGGFL  A +++     
Sbjct: 172 GAGQYFTPRVLIRVLVRLM----------QPQPGEVIQDPAGGTGGFLIAADHYMRARTD 221

Query: 231 ------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     +       HG E  P T  + +  + +  ++SD       ++  G TLS 
Sbjct: 222 NYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD-------HVDLGDTLSD 274

Query: 285 DLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 R +  L+NPPFG       +D +                  +S   + F+ H  
Sbjct: 275 KGKGLGRANLILTNPPFGPAGGAPTRDDLSV-------------TATVSSYQLPFVEHCI 321

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+     GGRAAIV+  + LF    G    ++R+ +++   +  I+ LPT +F+   +
Sbjct: 322 RALKP----GGRAAIVVPDNVLFEDGRG---RQLRQMMMDWCDLHTILRLPTGIFYAQGV 374

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T +  L+  KTE   G  +     DL   +   G K   + +                 
Sbjct: 375 KTNVIFLTRGKTE--TGNTKATWIYDLRAQMPKFG-KTTPLTEAHFE------------G 419

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL--EADITWRKLSPLHQSFWLDILKP 521
           F +      +G  R+K    +       +  +A      DI W + +       L   + 
Sbjct: 420 FEKAFGTSPYGKERVKDEGEVGRWREFRREEIAARGDNLDIAWLREADDEAEDGLTEPED 479

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTL 548
           +   I  +  A +   E++ +     L
Sbjct: 480 IAAAILGHLQAATLEIEALMAELGDEL 506


>gi|169347006|ref|ZP_02865948.1| 3D domain protein [Clostridium perfringens C str. JGS1495]
 gi|169296689|gb|EDS78818.1| 3D domain protein [Clostridium perfringens C str. JGS1495]
          Length = 487

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/490 (17%), Positives = 190/490 (38%), Gaps = 73/490 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     T++      L F    I  ++  ++    F   S    +       +
Sbjct: 35  LLFIKGLDDV--ETKNEAEAVLLGFEPERIFSDNEQELRWSKF---SNEGDAQKMYDIVQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   N ++ +  +     I ++    +L KI    +GIE   +   +    +
Sbjct: 90  NKVFPFIKNLHGNKESAYAKY-MGDAIFKIPTPLMLSKIVDGINGIEFKKE---NDTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  S  +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKLSSAGTN--GQFRTPRHIIDMIVKLM----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     ++F   L+NPPF       K +++ E  + EL +    + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKEKFTLVLANPPF-------KGSLDYEAVSAELLK----VTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G ++IR+ ++EN  +EAI
Sbjct: 296 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHNDIRKEIVENHKLEAI 349

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR  + ++  
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTK----TGSGGTDKVWFYDMKADGFSLDDKRNPVEENDI 405

Query: 450 RQILDIYVSRENGKFSRM----------------LDYRTFGYRRIKVLRPLRMSFILDKT 493
             I++ + + EN +  +                  D     Y+ I+    +  S  +   
Sbjct: 406 DDIIERFSNLENEEDRKRTEQSFFVPVEEIRENGYDLSINKYKEIEYEEVVYDSPSVILG 465

Query: 494 GLARLEADIT 503
            +  LE +IT
Sbjct: 466 RIKELEKEIT 475


>gi|260549263|ref|ZP_05823483.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
 gi|260407669|gb|EEX01142.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
          Length = 492

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 157/449 (34%), Gaps = 64/449 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESF----VKVAGYSFYNTSEYSLSTLGST 94
             L+ L+                +     +   +             + ++       + 
Sbjct: 34  LFLKFLDDYESEKEDESVLSGKDYQPVLDEEHRWSNWACPKNEEGKLDINKARTGDDLTD 93

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTI--------ARLEKAGLLYKICKNFSGIELH 146
                L  Y+  F++ A    +   F+  I         ++     L ++      +   
Sbjct: 94  YVNEKLFPYLKGFANTAVTGNDKQSFAYKIGAIFQYLDNKVASGHTLREVLDIVDSLNFQ 153

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     +S +YE L++  G      A +F TPR VV      +           P   
Sbjct: 154 SES-DLFELSLVYEGLLQNMGDAGGY-AGEFYTPRPVVRAMVQAI----------DPKPG 201

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVPHGQELEPETHAVCVAGMLI 261
            T+YD   G+ GFL +A  H+ D  +                G E     + + +  M++
Sbjct: 202 ETIYDAAAGSCGFLVEAFEHLRDKKNQLSTEQWDFIQRDTLFGYEKTSLAYVMGMMNMIL 261

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +ES      +   Q      +D+    R+   L+NPPFG K               E 
Sbjct: 262 HGIESPNLFRGNTLTQN----IRDIQEKDRYDIILANPPFGGK---------------EK 302

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            +     P  S+   +LFL H    L+     GG+AAIV+    LF  +  S   ++++ 
Sbjct: 303 SQIQQNFPIQSNATELLFLQHFMKTLK----SGGKAAIVVPEGVLF--QTNSAFKQVKQE 356

Query: 381 LLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  I++LP  +F   + + T +         ER G    +   +       +  
Sbjct: 357 LLENFNLHTILSLPAGVFLPYSGVKTNVLFF------ERSGGTSDVWYYEC--EPEQKLT 408

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
           K + I D+  ++ +++Y SRE  + S  +
Sbjct: 409 KNKPITDEHLKEFVELYKSRETTERSWTV 437


>gi|17230967|ref|NP_487515.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
 gi|17132608|dbj|BAB75174.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
          Length = 480

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 170/471 (36%), Gaps = 58/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E        + L     +   E        ++   SE            
Sbjct: 33  MIFLKVFDAREEEY------ELLEDNYKSPIPEGLRW---RNWAADSEGITGDGLLDFVD 83

Query: 98  NNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L   +      + +A+       F      ++   L+ ++    + ++ +      + 
Sbjct: 84  NALFKTLKELRTTATDARGQMIGKVFEDAYNYMKNGTLIRQVINKLNEVDFNKKDQK-KQ 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            S IYE +++   S  +  A ++ TPR V       +           P +   ++DP C
Sbjct: 143 FSEIYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPAC 190

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A++++        +P IL     G E +P    +CV  +++  ++       
Sbjct: 191 GTGGFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILNGIDVPSAEHD 250

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      +D    +R    ++NPPFG     ++D +E            P   +  
Sbjct: 251 NTLAR----PLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL+ +A+ L+     GGR AIVL    LF       ++ I+  LL++  +  IV 
Sbjct: 295 ETADLFLVLIAHLLK----EGGRGAIVLPDGTLF---GEGVKTRIKEKLLQDCNLHTIVR 347

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRR 450
           LP  +F   T I T L   +  +  E       I   +  + +      K + I  ++  
Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTET------IWYYEHPYPAGYKSYSKTKPIRFEEFA 401

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
              + + +RE  +F+  +           +         ++   L  + AD
Sbjct: 402 PEQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLAD 452


>gi|182626301|ref|ZP_02954057.1| type I restriction enzyme M subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177908399|gb|EDT70941.1| type I restriction enzyme M subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 487

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 183/489 (37%), Gaps = 73/489 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+          +E      G + D           +   S    +       +
Sbjct: 35  LLFIKGLDDV-----ETTKEAEATLLGVDFDRTFPEDKQDLRWSKFSNEGDAKKMYDIVQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   N ++ +  +     I ++    +L KI    +GIE   +   +    +
Sbjct: 90  NKVFPFIKNLHGNKESAYAKY-MEDAIFKIPTPLMLSKIVDGINGIEFKKE---NDTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  S  +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKLSSAGTN--GQFRTPRHIIDMIVKLM----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     ++F   L+NPPF       K +++ E  + +L +    + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKEKFTLVLANPPF-------KGSLDYEAVSADLLK----VTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IR+ ++EN  +EAI
Sbjct: 296 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRKEIVENHKLEAI 349

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR  + ++  
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTK----TGSGGTDKVWFYDMKADGFSLDDKRNPVEENDI 405

Query: 450 RQILDIYVSRENGKFSRM----------------LDYRTFGYRRIKVLRPLRMSFILDKT 493
             I++ + + EN +  +                  D     Y+ I+    +  +  +   
Sbjct: 406 NDIIERFSNLENEEDRKRTEQSFFVPVKEIRDNGYDLSINKYKEIEYEEVVYDAPSVILE 465

Query: 494 GLARLEADI 502
            +  LE +I
Sbjct: 466 RIKELENEI 474


>gi|153838493|ref|ZP_01991160.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|149748116|gb|EDM58975.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AQ3810]
          Length = 494

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 103/549 (18%), Positives = 190/549 (34%), Gaps = 89/549 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV------ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           SL   I +  + L  D   +           +L    L+ L+        + +E      
Sbjct: 2   SLQQKIDRITDILRRDDGISGAMHYTEQTSWVL---FLKFLDDY-----ESEKEDEAVLS 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR----------NNLESYIASFSDNAK- 112
           G +       +   +S +   + +   L     R          N L  Y+  F+++A  
Sbjct: 54  GKDYQPV-LDEEHRWSNWACPKNADGNLDINKVRTGDDLTDYVNNELFPYLKGFANSAIT 112

Query: 113 -AIFEDFDFSSTI--------ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
            +  +   F+  I         ++     L ++      +           +S +YE L+
Sbjct: 113 GSGVDPKSFAYKIGAIFQYLDNKVASGHTLREVLDIIDTLNFQSSD-EMFELSLVYEGLL 171

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           +  G      A +F TPR VV      +           P   +T+YD   G+ GFL +A
Sbjct: 172 QNMGDAGGY-AGEFYTPRPVVRAMIKAI----------DPQAGQTIYDAAAGSCGFLVEA 220

Query: 224 MNHVADCGS-----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            +H+    S                G E     + + +  M++  +ES      +   Q 
Sbjct: 221 FDHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMGMMNMILHGIESPNLFRGNTLTQN 280

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                +D+    R+   L+NPPFG K        EKE              K +   +LF
Sbjct: 281 ----IRDIQEKDRYDIILANPPFGGK--------EKEQIQQNFP------IKANATELLF 322

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H    L+     GG+AA+V+    LF  +  S   ++++ LLEN  +  I++LP  +F
Sbjct: 323 MQHFMKTLK----SGGKAAVVVPEGVLF--QTNSAFKQVKQELLENFNLHTILSLPAGVF 376

Query: 399 F-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
              + + T +         ER G    +   +       +  K + I DD  ++ +++Y 
Sbjct: 377 LPYSGVKTNVLFF------ERSGGTSDVWYYEC--EPEQKLTKNKPITDDHLKEFVELYS 428

Query: 458 SRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           SRE  + S  +   +      +    P +     D   LA  +     R    L      
Sbjct: 429 SRETTERSWTVSANKLAEDYDLSAKNPAK---QKDAEHLAPSDILKQIRTKEKLVSGLLD 485

Query: 517 DILKPMMQQ 525
           +I   + ++
Sbjct: 486 EIEDLLAEK 494


>gi|331266253|ref|YP_004325883.1| type I restriction-modification system, M subunit, putative
           [Streptococcus oralis Uo5]
 gi|326682925|emb|CBZ00542.1| type I restriction-modification system, M subunit, putative
           [Streptococcus oralis Uo5]
          Length = 482

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 170/487 (34%), Gaps = 72/487 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 32  GRESDAEFLGISYEGIFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 91

Query: 119 DFSS----TIARLEKAGLLYKICKNF-------SGIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K+           S I+   DT     + +IYE+L+ +  
Sbjct: 92  AFSRYMREAIFQINKPATLQKVISILDEFPTRGSDIDFDSDTQGVNDIGDIYEYLLSKLS 151

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 152 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 199

Query: 228 ADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +  P  +        HG + +     +    M++  +E       +  I    
Sbjct: 200 KRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 252

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + D  + +                K     +LFL 
Sbjct: 253 SLSQDNEEADKYTLVLANPPFKGSLDYDSTSND-----------LLATVKTKKTELLFLA 301

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 302 LFLRTLK----PGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 355

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    +   D+     +   KR+ I+D+    I   +   
Sbjct: 356 YAGVSTAILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDITQRFHQL 411

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +         ++   +     ++  +K++ L + 
Sbjct: 412 DNEAERKRTDQSFFVPVDEIKDNDYDLSINKYKE--IEYERVEYEPTEVILKKINDLEKE 469

Query: 514 FWLDILK 520
               + +
Sbjct: 470 IQAGLAE 476


>gi|238810195|dbj|BAH69985.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 560

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/574 (16%), Positives = 208/574 (36%), Gaps = 66/574 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGK------VILPFTLLRRLECAL------ 48
           MT FT     L N I    +DL G               V+    L + L          
Sbjct: 10  MTNFT----KLENNIKSIIDDLKGLCSTNGLSNTAGEEIVVTSVFLYKFLNDKFISNLKK 65

Query: 49  --EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
             +       E        +   +++ +   + + +T +Y +  +   +     +  +  
Sbjct: 66  FAKELNVPFEEIIKNSNYMDGFYDAYPQDVAFKYEDTIDYLVGYINEDDFYQKFDDTLIR 125

Query: 107 FSDNAKAIFEDFD------------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-- 152
            SD  +    + D             S+ +   ++      +    +          +  
Sbjct: 126 ISDYKQNEAFNVDTAEGTKKPLFVRLSTFVEPSKRNNFTKNVFSYITRDRFDFGEAFNNN 185

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               S I+E+LI  +     + AE F TP+ +      +L+             I  +YD
Sbjct: 186 YDFFSTIFEYLISDYNIASGKYAEYF-TPQTLSKAIGEILV-----KMSPIEDKIYEIYD 239

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ G+G  +     H+A+     K       + Q++  ++       ML+  L+      
Sbjct: 240 PSAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLNGLKESLDNI 295

Query: 272 LSKNIQQGSTLSK---DLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           +  +     T  K   D  TG K+F +  SNPPF   +   +D +E   +N E  RF  G
Sbjct: 296 IEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIELMWQNTE--RFFAG 353

Query: 328 LPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +PK+           +LF+ H+   L+     GG+AAIV+ +  +        E  IR++
Sbjct: 354 IPKVPKTKKDSMAIYLLFIQHILYSLK----EGGKAAIVVPTGFITAQS--GIEKTIRQY 407

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +++   ++ ++++P+++F  T     +  +    T    G+V L++A+ +    + +  +
Sbjct: 408 IIDRKWLKGVISMPSNIFANTGTNVSVLFIDKTNT---NGEVLLMDASKMGHKEKVKDLQ 464

Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + ++  D+  +I++ +V+ +    F+  + Y     R   +         ++   + + E
Sbjct: 465 KTVLTHDELNKIVNDFVNHKVEDDFTISVTYDQIKERNYSLSAGQYFEVKIEYVDITQEE 524

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            D      +   + F  D  +   +        +
Sbjct: 525 FDKMIDDFNKELEQFTKDTEEFQKEMSKTLKELK 558


>gi|317180666|dbj|BAJ58452.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 543

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 74/513 (14%), Positives = 168/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFSEEEKEDFFLTLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + S+      ++ 
Sbjct: 151 EESKRANFTRALLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQIG--------TN 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SK+     +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKECKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              N  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLNNKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +   
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSIIFFKKTPSA-- 426

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  + +     IL+ + ++ +   F  ++ +     + 
Sbjct: 427 -NEVVLIDASKLGEEYTENKNKKTRLRESDIDLILETFQNKTQKADFCTLVSFDEITEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFEKLMQQYSSE 518


>gi|194336313|ref|YP_002018107.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308790|gb|ACF43490.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 544

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/461 (14%), Positives = 168/461 (36%), Gaps = 23/461 (4%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
             LE  +  +          +     F       F    + +L  +  TN          
Sbjct: 76  DELEMLQLQMGPDTARLKPDHFIAHLFRNQNAPQFAKLFDDTLRDIAITNNDIFAVKTDG 135

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                      ++  +    R +    +     +FS   +   T      ++++E+LI+ 
Sbjct: 136 GAKVTLFDRLSEY-ITDESKRDDFCRAIINTLVDFSFERIF--TQKYDFYASLFEYLIKD 192

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +  +      ++ TP  V  +  ++L+       +       + YDP+ G+G  L +  +
Sbjct: 193 YNKDSGGKYAEYYTPHAVAKIMASILVPE----VQRGKVTNASCYDPSSGSGTLLMNLAH 248

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +         I     Q+         +   L+  + +  + +   +        K+
Sbjct: 249 AIGEQRCTIYSQDIS----QKSSSLLRLNLILNNLVHSIPNIIQGNTLLHPYH-----KE 299

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               K+F Y +SNPPF   +   ++ ++   ++       P +PK +   M         
Sbjct: 300 GKALKKFDYIVSNPPFKMDFSDFRNELDTREQHERFFAGIPNVPKQATDKMAIYQLFLQH 359

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +      GG+AA+V+ +  +        + +IR  L++  ++  +V++P+++F  T    
Sbjct: 360 IIYSLKPGGKAAVVVPTGFITAQS--GIDRKIRERLVDGKMLAGVVSMPSNIFATTGTNV 417

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKF 464
            +  + +      +  V LI+A+ L T ++    ++ ++++D+   I+  + S+E    F
Sbjct: 418 SILFIDDG----NKDDVVLIDASSLGTKVKEGKNQKTVLSEDEEDWIITTFNSKEAEEDF 473

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           S +++Y     +   +         ++ T L   E  +  +
Sbjct: 474 SVVVNYDEIAAKNYSLSAGQYFDVRIEYTDLTPKEFSMKMQ 514


>gi|118466595|ref|YP_884147.1| type I restriction-modification system, M subunit [Mycobacterium
           avium 104]
 gi|118167882|gb|ABK68779.1| type I restriction-modification system, M subunit [Mycobacterium
           avium 104]
          Length = 495

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 164/479 (34%), Gaps = 60/479 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+     LE  R    E +     +              +             T   
Sbjct: 49  LLFLKAF-DGLEENREITEENFRPAIEAPY--------RWRDWAADPNGRTGDALLTFVN 99

Query: 98  NNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L  Y+   S        D     F  T  R+    LL  +    + I           
Sbjct: 100 NELLPYLRGLSGTGSHDPRDVLAAVFKETYNRMLSGYLLRDVVNKVNEINFASSD-DIHT 158

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M+++YE ++R       +   +F TPR ++      +           P +   + DP C
Sbjct: 159 MAHLYESMLREMRDAAGDS-GEFYTPRPIIRFIVQQV----------DPRLGEVILDPAC 207

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFL +A+ H++   +       L     G E +P    + +  +++  +    + ++
Sbjct: 208 GTGGFLVEALEHLSPKVTTTAQLRALHENLRGIEKKPLPFLLGMMNLVLHGV---GQPNI 264

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           ++      ++++ +   +R    L+NPPFG + EK   A              P   + +
Sbjct: 265 TRGNALAESITQ-ISKARRVDVILTNPPFGGEEEKSIQA------------NFPADKQTA 311

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL  +   L+     GGR  IV+ +  LF G  G+    I++ LL    +  IV 
Sbjct: 312 ETAWLFLQLVIRMLK----DGGRCGIVVPNGLLFGGGVGA---RIKKQLLTECNLHTIVR 364

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRR 450
           LP   F   T+I + L            G+ + I   ++     R +  K + +  ++  
Sbjct: 365 LPDGAFAPYTDIPSNLLFFDK------TGRTKEIWYYEISPPEGRKKYSKSKPMRFEEFA 418

Query: 451 QILDIYVSRENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                + +R   + +    + D        + +  P R   +  +     L   I   +
Sbjct: 419 DCQVWWSNRVENERAWRVPIADIEANDMYNLDLRNPNRGDDLAHRPPAELLAELIDTER 477


>gi|309810115|ref|ZP_07703961.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169614|gb|EFO71661.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D]
          Length = 462

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 146/410 (35%), Gaps = 27/410 (6%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++A     +               +    + I+E+LI+ + +       ++ TP  +  +
Sbjct: 73  QRAPFARALVDKLVNFSFEAAFNENYDFFAAIFEYLIKDYNTAGGGKYAEYYTPHAIATI 132

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              LL+  +  L          +YDP+ GTG  L           SH           Q+
Sbjct: 133 MARLLVGDNTDLHDIE------VYDPSAGTGTLLIAL--------SHQIGQDRCTIFAQD 178

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +   ++ +    +++  L S     +  +        S D    ++F Y +SNPPF   +
Sbjct: 179 ISQRSNKMLKLNLILNGLVSSLDHAVQGDTLTHPYHKSNDGKELRQFDYVVSNPPFKMDF 238

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +++ +             P +P      M         +       G+ AIV+ +  L
Sbjct: 239 SDNREELASMP--VRFWGGVPKIPAKKKEKMAIYTLFIQHVINSIKSNGKGAIVVPTGFL 296

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
              +    E+++  ++++  +I   +++P+++F  T     +      +  +   KV LI
Sbjct: 297 TVKK--GVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSVLFFDKSQEHD---KVVLI 351

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+ +    ++   ++  +  ++  QI+  +  ++    FS ++ Y     ++  +    
Sbjct: 352 DASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVSYDEIKEKKYSLAAGQ 411

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFW---LDILKPMMQQIYPYGW 531
                ++   L   E     +      Q  +     +   +M+Q+    +
Sbjct: 412 YFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQLKKVKY 461


>gi|270292633|ref|ZP_06198844.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
 gi|270278612|gb|EFA24458.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
          Length = 497

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/491 (18%), Positives = 169/491 (34%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGISYEGIFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFMKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNF-------SGIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K+           SGI+   DT     + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKVISILDEFPTRDSGIDFDSDTQGINDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 214

Query: 228 ADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +  P  +        HG + +     +    M++  +E       +  I    
Sbjct: 215 KRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 267

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + D  + +                K     +LFL 
Sbjct: 268 SLSQDNEEADKYTLVLANPPFKGSLDYDSTSND-----------LLATVKTKKTELLFLA 316

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 317 LFLRTLK----PGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              ++T + I +        G    +   D+     +   KR+ I+D+    I+  +   
Sbjct: 371 YAGVSTAILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIQRFHQL 426

Query: 460 ENG------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           EN         S  +           +          +K      E  +           
Sbjct: 427 ENEAERKRTDQSFFVPVDEIKDNDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 486

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 487 AGLAELEELLK 497


>gi|228475437|ref|ZP_04060155.1| N-6 DNA methylase [Staphylococcus hominis SK119]
 gi|228270219|gb|EEK11654.1| N-6 DNA methylase [Staphylococcus hominis SK119]
          Length = 410

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 159/306 (51%), Gaps = 18/306 (5%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLES--FVKVAGYSFYNTSEYSLSTL--GST 94
           T+++RL   L  TR  V +        N  +        +GYSFYNTS Y+  TL    +
Sbjct: 110 TVIKRLHDTLLKTRDEVIKSAENTQSMNSVMRERLLKNASGYSFYNTSLYTFETLLADPS 169

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPD 152
           N  +N   ++  FS+N + I ++F F   I  +     L+ + + F+ ++  L PD +  
Sbjct: 170 NIESNFRDFLNGFSENMQDILDNFKFDVEITTMTDNDALFYVIQEFNKVDAYLDPDKMTS 229

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             M  ++E L+R+F    +E A    T RD+++L T LLL  D     +   + +T+YD 
Sbjct: 230 TDMRYVFEKLVRKFSESYNEEAGAHFTSRDIIYLMTDLLLIEDKNTLFKE-HVFKTVYDQ 288

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T GT   L+     + D     ++       GQEL PET+A+  A  +IR  E +     
Sbjct: 289 TMGTSQMLSAMTERIHDVNDTAEV----ATFGQELNPETYAIAKADTMIRGGEPE----- 339

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             N+   STL+ D F G  F Y +SNPPFG  W+KD+++V+ EH+  ELGRFG GLP++S
Sbjct: 340 --NMALESTLTNDQFEGFTFDYYISNPPFGVDWKKDQESVKAEHELSELGRFGVGLPRVS 397

Query: 333 DGSMLF 338
           DG +LF
Sbjct: 398 DGQLLF 403


>gi|319955096|ref|YP_004166363.1| site-specific DNA-methyltransferase (adenine-specific)
           [Cellulophaga algicola DSM 14237]
 gi|319423756|gb|ADV50865.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Cellulophaga algicola DSM 14237]
          Length = 476

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/498 (17%), Positives = 176/498 (35%), Gaps = 67/498 (13%)

Query: 38  FTLLRRLECALEPTRSAVRE------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              ++      E     + +      ++L +     D E     A   F  T  +     
Sbjct: 34  MLFMKIFADKEEEWEITIDDYQSPIPEHLKWQNWAADDEGLTGDALMEFIETELFP---- 89

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                   L+  ++  +   +++F+D     T   ++   L  ++    + I+ + D+  
Sbjct: 90  ----ALKELDITLSPQAKIIRSVFDD-----TYNFMKNGTLFRQVINVINQIDFN-DSKE 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V +++YE +++   S     + ++ TPR V      ++          +P +  ++ D
Sbjct: 140 SHVFNDLYETILKDLQSAG--SSGEYYTPRAVTQFMVDII----------NPQLGESVLD 187

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P CGTGGFLT  ++HV +    +    +L     G E +P  H +C   +++   +    
Sbjct: 188 PACGTGGFLTCTIDHVRNQVKDYTQRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDLPVV 247

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           R  +   +       D     +    LSNPPFG     ++D  E            P   
Sbjct: 248 RRDNLLSK----PYADWGAKDKLDIILSNPPFGG---VEEDGTETNF---------PKKF 291

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +  + + LFL  +   L+      GR AIVL    LF       ++ ++  LL+   +  
Sbjct: 292 RTKETADLFLALIIKLLK----DKGRCAIVLPDGTLF---GEGMKTRLKEELLDKCNLHT 344

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDD 447
           IV LP  +F   T+I T L         +       +   +  +        K + IN  
Sbjct: 345 IVRLPNGVFNPYTSIKTNLLFFEKGTPTKD------VWYYEHQYPKGAKSYNKTKPINIK 398

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWR 505
           +       +  R   +++  +       R     +  P +    L+   +   +   T +
Sbjct: 399 EFDVEKKWWNKRVENEYAWKVSIEDIKKRNYNLDIKNPHQEVDNLESPEVILEKFRTTEQ 458

Query: 506 KLSPLHQSFWLDILKPMM 523
           K+S +       + + + 
Sbjct: 459 KISSIQDEIINVLTEALK 476


>gi|197121942|ref|YP_002133893.1| N-6 DNA methylase [Anaeromyxobacter sp. K]
 gi|196171791|gb|ACG72764.1| N-6 DNA methylase [Anaeromyxobacter sp. K]
          Length = 486

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 150/455 (32%), Gaps = 71/455 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---- 93
              L+ L+  LE  R+ V E         +D     K   +S +   +     +      
Sbjct: 32  LLFLKYLDE-LEQERATVAELEGKRYSYILD-----KPYRWSEWAAPKDRDGKIDHNKAK 85

Query: 94  ------TNTRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFS 141
                       L  Y+  F   A           +  F     ++     L +I     
Sbjct: 86  TGDDLRDFVNLKLFPYLHGFKQKASGPNTVEYKIGEI-FGEIRNKIGSGYNLREIIDQID 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +     T     +S +YE  I+R G+       ++ TPR ++     ++          
Sbjct: 145 ELRFRSQTEK-HELSMLYEEKIKRMGN-AGRNGGEYYTPRPLIRAMVQVV---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVA 257
           +P +   +YDP CG+ GFL +A +++           K        G+E +   + + + 
Sbjct: 193 APKVGERIYDPACGSAGFLCEAFDYLKGKPGLTTKDLKTLQEKTFFGKEKKSLAYVIGIM 252

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E+      +   +       D+    R    L+NPPFG K  K+         
Sbjct: 253 NMILHGIEAPNILHTNTLAEN----LADIQEKDRVDVILANPPFGGKERKEVQQN----- 303

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                       +  + + LFL H    L+     GGRA IV+ ++ L      S    +
Sbjct: 304 ---------FAIRSGETAFLFLQHFIKMLKA----GGRAGIVIKNTFLSGNDNAS--VGL 348

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLE   +  ++  P   F    + T +          +      I    L       
Sbjct: 349 RKLLLETCNLHTVLDCPAGTFQGAGVKTVVLFFEKGAPTRK------IWFYQL--DAGRN 400

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             K   +NDD     L +  ++     S +LD +T
Sbjct: 401 LGKTNPLNDDDLVDFLRLEKTKAESAKSWVLDTKT 435


>gi|262373387|ref|ZP_06066666.1| N-6 DNA methylase [Acinetobacter junii SH205]
 gi|262313412|gb|EEY94497.1| N-6 DNA methylase [Acinetobacter junii SH205]
          Length = 491

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 179/493 (36%), Gaps = 59/493 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ ++      R           G         K    ++    E            
Sbjct: 33  MLFLKVVDD-----RENELATLALLEGITFKSPIPEKFRWRNWAANDEGMTGDELKDFID 87

Query: 98  NNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L   + +    +D+ +A      F+     ++  GL+ K+            +     
Sbjct: 88  NELFPALQNLAVENDDPRARVVQNVFADAYNYMKSGGLIRKVINQIQRGFDFNKSKERHA 147

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE L+R    + ++ + +F TPR V      ++           P +  ++ DP C
Sbjct: 148 FGDIYEQLLRDL--QAAKNSGEFYTPRAVTTFMAQMI----------DPQLGESVLDPAC 195

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFLT A+ H  +          +     +G E +P  H +C   M++  ++  P + 
Sbjct: 196 GTGGFLTSAIEHKRENYVQTAEDEKILQNSIYGIEKKPLPHLLCTTNMILHGID-VPVKI 254

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +  N    S         KR    L+NPPFG     ++  +EK           P   + 
Sbjct: 255 IRDNTL--SYSLNHWVKEKRVDVVLTNPPFGG---TEEQGIEKNF---------PSKFQT 300

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LF++ +   L+      GRAA+VL    +F       ++ I+  L+E+  +  IV
Sbjct: 301 RETADLFMVLIIQLLKA----HGRAAVVLPDGFMF---GEGIKTAIKEKLMEDCNLHTIV 353

Query: 392 ALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP  +F   T+I+T +   +  K      K + +   +    +    K        Q +
Sbjct: 354 RLPKSVFAPYTSISTNILFFTKGK------KTEEVWFYEH--QLPQGVKAYNKTKPLQLK 405

Query: 451 QI--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-RKL 507
           +   L  +  +E+  F+  +        ++ +   +   + LD     ++E D+    +L
Sbjct: 406 EFDGLKAWWDKESDGFAGRVVNEQ--AWKVSLQDIIDRGYNLDIKNPHQVEEDVKDPEEL 463

Query: 508 SPLHQSFWLDILK 520
              +++   ++ K
Sbjct: 464 LAKYENLEAEVAK 476


>gi|307638193|gb|ADN80643.1| typeI restriction-modification system DNA-methyl transferase
           subunit M [Helicobacter pylori 908]
 gi|325996788|gb|ADZ52193.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
 gi|325998380|gb|ADZ50588.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           2017]
          Length = 301

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 120/333 (36%), Gaps = 44/333 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                     N
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------KAKN 47

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            +        G  +    E  L+  G     + L   IA  ++  + K + +  DF+   
Sbjct: 48  NNFSEIEVPQGCFY----EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFNDNT 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  + K F+ + L     + D ++ + YE+L+R F SE  +    F TP
Sbjct: 104 KLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V        L        E+    +++YDPTCG+G  L  A +     G        L
Sbjct: 164 SEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLAGKKG--------L 209

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE +  T A+C   M++    +        +        K+    K F Y ++NPP
Sbjct: 210 TIYGQEKDISTTALCKMNMILHNSATADIAKGGFSTLSNPLFIKNG-MLKTFDYVVANPP 268

Query: 301 FGKKWEKDKDAVEKEHK---NGELGRFGPGLPK 330
           F  K   D  +++ + K        RF  G P 
Sbjct: 269 FSLKNWTDGLSIDPKSKAVVGDSFNRFEDGTPP 301


>gi|308190348|ref|YP_003923279.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|319777745|ref|YP_004137396.1| n-6 DNA methylase [Mycoplasma fermentans M64]
 gi|307625090|gb|ADN69395.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|318038820|gb|ADV35019.1| N-6 DNA methylase [Mycoplasma fermentans M64]
          Length = 551

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 96/574 (16%), Positives = 208/574 (36%), Gaps = 66/574 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGK------VILPFTLLRRLECAL------ 48
           MT FT     L N I    +DL G               V+    L + L          
Sbjct: 1   MTNFT----KLENNIKSIIDDLKGLCSTNGLSNTAGEEIVVTSVFLYKFLNDKFISNLKK 56

Query: 49  --EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
             +       E        +   +++ +   + + +T +Y +  +   +     +  +  
Sbjct: 57  FAKELNVPFEEIIKNSNYMDGFYDAYPQDVAFKYEDTIDYLVGYINEDDFYQKFDDTLIR 116

Query: 107 FSDNAKAIFEDFD------------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-- 152
            SD  +    + D             S+ +   ++      +    +          +  
Sbjct: 117 ISDYKQNEAFNVDTAEGTKKPLFVRLSTFVEPSKRNNFTKNVFSYITRDRFDFGEAFNNN 176

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               S I+E+LI  +     + AE F TP+ +      +L+             I  +YD
Sbjct: 177 YDFFSTIFEYLISDYNIASGKYAEYF-TPQTLSKAIGEILV-----KMSPIEDKIYEIYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ G+G  +     H+A+     K       + Q++  ++       ML+  L+      
Sbjct: 231 PSAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLNGLKESLDNI 286

Query: 272 LSKNIQQGSTLSK---DLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           +  +     T  K   D  TG K+F +  SNPPF   +   +D +E   +N E  RF  G
Sbjct: 287 IEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIELMWQNTE--RFFAG 344

Query: 328 LPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +PK+           +LF+ H+   L+     GG+AAIV+ +  +        E  IR++
Sbjct: 345 IPKVPKTKKDSMAIYLLFIQHILYSLK----EGGKAAIVVPTGFITAQS--GIEKTIRQY 398

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +++   ++ ++++P+++F  T     +  +    T    G+V L++A+ +    + +  +
Sbjct: 399 IIDRKWLKGVISMPSNIFANTGTNVSVLFIDKTNT---NGEVLLMDASKMGHKEKVKDLQ 455

Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + ++  D+  +I++ +V+ +    F+  + Y     R   +         ++   + + E
Sbjct: 456 KTVLTHDELNKIVNDFVNHKVEDDFTISVTYDQIKERNYSLSAGQYFEVKIEYVDITQEE 515

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            D      +   + F  D  +   +        +
Sbjct: 516 FDKMIDDFNKELEQFTKDTEEFQKEMSKTLKELK 549


>gi|146281848|ref|YP_001172001.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145570053|gb|ABP79159.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 440

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 148/409 (36%), Gaps = 55/409 (13%)

Query: 93  STNTRNNLESYIA---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                NNL   +     +S+   A      F      ++   LL ++             
Sbjct: 31  KDFIDNNLFPQLQNLHEYSNTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQQGVDFNKA 90

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  N+YE L+R   +  +  A +F TPR V      ++           P +   +
Sbjct: 91  QERHEFGNLYEQLLRDLQNAGN--AGEFYTPRPVTEFMVRMV----------DPKLDEKV 138

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT  + H        +  +       +G E +P  H +    M++  +E 
Sbjct: 139 MDPACGTGGFLTCTIEHKRSRYVKTAEDERTLQASIYGVEKKPLPHLLATTNMILHGIE- 197

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                +   I+  +TL++        +R    ++NPPFG     ++D +E          
Sbjct: 198 -----VPNQIRHDNTLARPLISWGPKERVDCIVANPPFGG---MEEDGIETNF------- 242

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             P   +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL 
Sbjct: 243 --PAAFRTRETADLFLVLIMHLLK----DGGRAAVVLPDGFLFGEGIKS---RIKEKLLT 293

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +  IV LP  +F   T I T L   +     +   +V        + +      K R
Sbjct: 294 ECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTK---EVWF--YEHQYPAGVKNYSKTR 348

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +  ++   + + +   E   F+  ++       ++ +      ++ LD
Sbjct: 349 PMRIEEFA-VEEAWWGSEADGFAARVENEF--AWKVSLDELKDRNWNLD 394


>gi|327403690|ref|YP_004344528.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319198|gb|AEA43690.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 510

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 198/534 (37%), Gaps = 71/534 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++ L+       + +R +  +  G        ++   + + N  E  ++      TN
Sbjct: 35  LIFIKDLDE------TEIRSELKSKHGFKYTPIFSIEQQPFRWKNLKEMDVNARHDVFTN 88

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           T + +  +I S   + K++F           + K  +L ++ +    I++          
Sbjct: 89  TVDGVFPFIRSLGKD-KSLFS-VYMRGATFGISKPMVLDQVMEKLGNIDMSNQ----DTK 142

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE+L+ +   E    A  F TPR ++ L   L+           P +  T+ DP+CG
Sbjct: 143 GDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVELM----------RPTLEDTICDPSCG 190

Query: 216 TGGFLTDAMNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           + GFL  A  ++    S   I          + +G E +     +    + +  +E    
Sbjct: 191 SAGFLVGAKEYIDKHNSVTDIDRAAHHINTEMFNGMEFDATMLRIASMNLYLHGVEEPNI 250

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            D+         +SKD      +   L+NPPF  K   DKD++    KN         + 
Sbjct: 251 IDV-------DAVSKDNTISDAYTLVLANPPF--KGTIDKDSISAGLKN---------VT 292

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   +LFL  +  +L+     GGR A+++    LF   +G     IR  ++ N+ +EA
Sbjct: 293 DTSKTELLFLALMLRQLK----SGGRCAVIVPDGVLF--GSGKAHKSIREEIVANNKLEA 346

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++++P+ +F     ++T + I +  +T    G    +   D+    ++   KR ++  ++
Sbjct: 347 VISMPSGVFKPYAGVSTAIMIFTKTET----GGTDNVWFYDMQADGKSLDDKRNVLVSEE 402

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD----ITW 504
                  + +   G  S  L          K   P  +S   ++    R   +    + +
Sbjct: 403 I------FDAFAFGDVSETLTKERIATLHDKFNLPDIISRYPNRYRENRKRTEQSFMVPF 456

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            ++     +  ++  K ++ +   Y   +  +         +   +    S + 
Sbjct: 457 SEIKTNEWNLSINRYKEIVYEEVKYDEPQVIINRIDSLENDRKYLMSNLTSLLK 510


>gi|224419061|ref|ZP_03657067.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253828001|ref|ZP_04870886.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142569|ref|ZP_07804762.1| HsdM [Helicobacter canadensis MIT 98-5491]
 gi|253511407|gb|EES90066.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131600|gb|EFR49217.1| HsdM [Helicobacter canadensis MIT 98-5491]
          Length = 499

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 184/503 (36%), Gaps = 80/503 (15%)

Query: 11  LANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---YLA 61
           + N I +  + L       G   +++    IL    L+ L+      +         Y +
Sbjct: 1   MQNTIDRITDILRRDDGISGAMHYSEQISWIL---FLKFLDDYERELKDEAFLNDVPYAS 57

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-- 119
              S    +S+         +       +       N L  Y+ SF +N     EDF   
Sbjct: 58  ILDSQYAWQSWAAPKKDGKLDVKNALSGSDLLEFVNNELFPYLKSFKNN-----EDFKSI 112

Query: 120 -------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                  F     R+     L ++      +    ++     + ++YE L++  GS+   
Sbjct: 113 AYKIGGIFEFIDNRIANGHTLREVINLIDELSFSKES-DVFALGDVYEKLLKDMGSDGGN 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADC 230
              +F TPR +V +   ++          +P     +YDP CG+ GFL ++  H+   D 
Sbjct: 172 S-GEFYTPRALVKVMVEVI----------NPKPKERIYDPACGSCGFLVESFLHILYEDR 220

Query: 231 GSHHKIP---------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               K                 G+E  P ++A+ V  M++  ++S      +   +    
Sbjct: 221 AKGQKANLSVEELEFLQKDALFGKEKTPLSYAMGVMNMILHGIKSPNIIKTNTLSK---- 276

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              D+   +R+   L+NPPFG K        EKE   G        +   +   +LFL H
Sbjct: 277 RITDITESERYEVILANPPFGGK--------EKEQIQGNF------IVPSNATELLFLQH 322

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400
           +   L+      GR AI++    LF  +  +   ++++ L+EN  +E +++LP+ +F   
Sbjct: 323 ILKSLKT----NGRCAIIVPEGVLF--QNSNAFVKVKQDLIENYNLECVLSLPSGVFLPY 376

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSI--RNEGKKRRIINDDQRRQILDIYVS 458
           + + T +   S       RG V   ++   +  +    +  K + +     ++ L+ Y  
Sbjct: 377 SAVKTNVLFFSKG----LRGIVDEQDSNVYYYELIPPYKLTKNKPLEYVHFKEFLECYKQ 432

Query: 459 RENGKFSRMLDYRTFGYRRIKVL 481
           R+    S ++       R   + 
Sbjct: 433 RKITPHSYLVSLEELKARNYDLS 455


>gi|297209067|ref|ZP_06925467.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886338|gb|EFH25271.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 266

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 119/282 (42%), Gaps = 29/282 (10%)

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    ML+  +  +     + +I+   TL    F G  F   ++NPP+  K
Sbjct: 1   QERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGHTFDAVIANPPYSAK 55

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  D      E  +G        L   S     F+ H+ + L    +  G  A+VL    
Sbjct: 56  WTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGV 106

Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V 
Sbjct: 107 LFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQEDYVL 161

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLR 482
            I+A++ +   +N    +  + D Q  +I++ Y  +E   K+S     +        +  
Sbjct: 162 FIDASNDFEKGKN----QNHLTDAQVERIINTYKRKETIDKYSYSATLQEIADNDYNLNI 217

Query: 483 PLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
           P  +    ++  +     + +     ++++ + Q     + +
Sbjct: 218 PRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEINAYLKE 259


>gi|78357541|ref|YP_388990.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219946|gb|ABB39295.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 488

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 144/374 (38%), Gaps = 57/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  + V GY     S +  S+          E  I   +++     +        
Sbjct: 40  DDKEQEWQLTVPGYKSPLPSRFRWSSWAKNPEGMTGEELIDFVNNDLFPALKKLATAAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE ++    S 
Sbjct: 100 SPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDRHLFNDIYEKILSDLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P + +T+ DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTQFMVDML----------DPQLGQTILDPACGTGGFLTCAIEHLNK 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---K 284
                +    L    HG E +P  H + +  M++  +      D+  N++  +TLS   K
Sbjct: 208 QVKTAEDRKRLQECIHGVEKKPLPHMLAMTNMMLHGI------DVPTNVRHDNTLSRPLK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +E            P   +  + + LF+  + +
Sbjct: 262 DYGPRDRVDLIITNPPFGG---MEEDGIENNF---------PRKYQTRETADLFMALIMH 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+   +  G+AA+VL    LF       ++ I+R LLE   +  IV LP  +F   T+I
Sbjct: 310 LLK---HDTGKAAVVLPDGFLF---GEGVKTTIKRELLEEFNLHTIVRLPKGVFSPYTSI 363

Query: 404 ATYLWILSNRKTEE 417
           AT +         +
Sbjct: 364 ATNILFFEKGGPTK 377


>gi|308184243|ref|YP_003928376.1| type I restriction enzyme M protein [Helicobacter pylori SJM180]
 gi|308060163|gb|ADO02059.1| type I restriction enzyme M protein [Helicobacter pylori SJM180]
          Length = 543

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 74/513 (14%), Positives = 166/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFLITLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+          P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLV--------SEPTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    R  +  N       SKD     +  + +SN
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTLTNPYHSKDHKG--KMDFIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSPKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  +V +P+ +F  T     +       + + 
Sbjct: 371 VVPTGFISAKS--GVENKIVRHLVDERLVYGVVCMPSQVFANTGTNVSIIFFQKTPSAK- 427

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 428 --EVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTKKSDFCALVSFDEITEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEAISQEEFENLMQQYSSE 518


>gi|225858683|ref|YP_002740193.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 70585]
 gi|225720662|gb|ACO16516.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 70585]
          Length = 497

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 85/491 (17%), Positives = 165/491 (33%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 214

Query: 228 ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +            + HG + +     +    M++  +E       +  I    
Sbjct: 215 KRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 267

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + +  + +                K     +LFL 
Sbjct: 268 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLS 316

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 317 LFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    I   D+     +   KR+ I+D+    I++ +   
Sbjct: 371 YAGVSTAILIFTK----TGNGGTDKIWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHL 426

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +          +K      E  +           
Sbjct: 427 EKEAERQRTDQSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 486

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 487 AGLAELEKLLK 497


>gi|297207477|ref|ZP_06923913.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887813|gb|EFH26710.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 266

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 118/282 (41%), Gaps = 29/282 (10%)

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    ML+  +  +     +  I+   TL    F G  F   ++NPP+  K
Sbjct: 1   QERNNTTYNLARMNMLLHDVRYE-----NFEIRNDDTLENPAFLGNTFDAVIANPPYSAK 55

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  D      E  +G        L   S     F+ H+ + L    +  G  A+VL    
Sbjct: 56  WTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEGTMAVVLPHGV 106

Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V 
Sbjct: 107 LFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVL 161

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLR 482
            I+A++ +   +N    +  ++D Q  +I+D Y  +    K+S     +        +  
Sbjct: 162 FIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKATIDKYSYSATLQEIADNDYNLNI 217

Query: 483 PLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
           P  +    ++  +     + +     ++++ + Q     + +
Sbjct: 218 PRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 259


>gi|312115848|ref|YP_004013444.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220977|gb|ADP72345.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 482

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 172/499 (34%), Gaps = 63/499 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAF-----GGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
             L+ L       R     +   +     G    D  +  K  G   +NT+         
Sbjct: 33  LFLKYLHDLESERRDRAELEGKDYKPIIDGQIRWDQWAAPKKNGQFDHNTAL--TGDDLV 90

Query: 94  TNTRNNLESYIASFS------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                +L  Y+A F       D  +    +  F+   ++     +L  + +    +    
Sbjct: 91  DFVDRSLFPYLARFHERATGPDTIEYKIGEV-FTELRSKFRSGYILRDVLEIVDSLHF-K 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S +YE  IRR G+       ++ TPR ++     ++          +P +  
Sbjct: 149 TQADKHELSALYETRIRRMGN-AGRNGGEYYTPRPLIRAMIRVV----------APKIGE 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YD   G+ GFL +A +++       S ++       +GQE +   + + +  M++  +
Sbjct: 198 TIYDGAVGSAGFLCEAYDYLRRPNISASDYETLQRRTFYGQEKKSLAYIIGIMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E+      +   +       D     R    L+NPPFG    ++                
Sbjct: 258 EAPNIVRTNSLNEN----VLDYQEKDRHDIVLANPPFGGGERREVQQN------------ 301

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K  + + LFL H   KL      GGRAA+V+ ++ L N    S    +RR LLE+
Sbjct: 302 --FPIKSGETAYLFLQHFIRKLRA----GGRAAVVIKNTFLSNTDNAS--VALRRELLES 353

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  I+  P   F    + T +      +   R    QL+    +         K   +
Sbjct: 354 CNLHTILDCPQGTFQGAGVKTVVLFFQKGEATRRIWYYQLVPGRSMG--------KTNPL 405

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           NDD   + +++      G  S ++D  T   +   +   ++     +   +   E  I  
Sbjct: 406 NDDDMAEFVELQRGFVTGPKSWIVDIATVDAKTFDLS--VKNPNAPEAEAMRSPEEIIDA 463

Query: 505 RKLSPLHQSFWLDILKPMM 523
                   +  L+ ++ ++
Sbjct: 464 ILARDAETAEILERIRGLL 482


>gi|188527247|ref|YP_001909934.1| type I restriction enzyme M protein [Helicobacter pylori Shi470]
 gi|188143487|gb|ACD47904.1| type I restriction enzyme M protein [Helicobacter pylori Shi470]
          Length = 543

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 74/513 (14%), Positives = 167/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFLITLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SKDL    +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKDLKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +   
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSIIFFKKTPSA-- 426

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 427 -NEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCALVSFDEITEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518


>gi|254777457|ref|ZP_05218973.1| type I restriction-modification system, M subunit [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 474

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 157/479 (32%), Gaps = 60/479 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+     LE  R    E +     +              +             T   
Sbjct: 28  LLFLKAF-DGLEENREITEENFRPAIEAPY--------RWRDWAADPNGRTGDALLTFVN 78

Query: 98  NNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N L  Y+   S        D     F  T  R+    LL  +    + I           
Sbjct: 79  NELLPYLRGLSGTGSHDPRDVLAAVFKETYNRMLSGYLLRDVVNKVNEINFASSD-DIHT 137

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M+++YE ++R       +   +F TPR ++      +           P +   + DP C
Sbjct: 138 MAHLYESMLREMRDAAGDS-GEFYTPRPIIRFIVQQV----------DPRLGEVILDPAC 186

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFL +A+ H++   +       L     G E +P    + +  +++  +        
Sbjct: 187 GTGGFLVEALEHLSPKVTTTAQLRALHENLRGIEKKPLPFLLGMMNLVLHGVGQPNITRG 246

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +        +   +R    L+NPPFG + EK   A              P   + +
Sbjct: 247 NALAE----SITQISKARRVDVILTNPPFGGEEEKSIQA------------NFPADKQTA 290

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL  +   L+     GGR  IV+ +  LF G  G+    I++ LL    +  IV 
Sbjct: 291 ETAWLFLQLVIRMLK----DGGRCGIVVPNGLLFGGGVGA---RIKKQLLTECNLHTIVR 343

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRR 450
           LP   F   T+I + L            G+ + I   ++     R +  K + +  ++  
Sbjct: 344 LPDGAFAPYTDIPSNLLFFDK------TGRTKEIWYYEISPPEGRKKYSKSKPMRFEEFA 397

Query: 451 QILDIYVSRENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                + +R   + +    + D        + +  P R   +  +     L   I   +
Sbjct: 398 DCQVWWSNRVENERAWRVPIADIEANDMYNLDLRNPNRGDDLAHRPPAELLAELIDTER 456


>gi|218439053|ref|YP_002377382.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218171781|gb|ACK70514.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 509

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 120/553 (21%), Positives = 206/553 (37%), Gaps = 75/553 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLEC-----ALEPTRSAVREK 58
           S   L N IW+  + L  D       + I  L     L+ L+      ALE      +  
Sbjct: 2   SKEQLTNDIWRACDILRRDNNCGGIMEYIEHLAWLLFLKFLDEQEDTFALEAELRNEKYH 61

Query: 59  YL---AFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNA-KA 113
           Y+    +  SN   +   K    S   NT E+   TL     +  L  Y+AS S +  + 
Sbjct: 62  YMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLM-GFVKEKLIPYLASLSGSPERE 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +        T+   +    L  + +    I+          +S+ YE+L++R GS  ++ 
Sbjct: 121 VIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNSD-DIYTVSHTYENLLQRLGS-ENKM 178

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TPR V+     ++           P +  T+YDP CGT GFL  A  ++      
Sbjct: 179 AGEFYTPRPVIRFMVEVI----------DPKIGETVYDPACGTCGFLVAAYEYMKQWEQT 228

Query: 234 HKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
            +   IL      GQE +P    +    M++  +       L  +IQ+ +TL +D  T  
Sbjct: 229 IRDRDILQRHTFFGQEKKPLPALLGTMNMVLHGV-------LVPDIQRKNTLEEDTRTAI 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K++   L+NPPFG K            +N ++ +  P     +   +LFL H+  KL+  
Sbjct: 282 KKYDIILTNPPFGGK------------ENKQIQKNFP--VSANATELLFLEHIIKKLK-- 325

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
            +   R  +V+    LF   A      ++ WLL +  +  +V+LP   F   +++   L 
Sbjct: 326 TDDNARCGMVVPEGTLFRSGA---FGTVKEWLLNDFNLVMVVSLPPGTFAPYSDVKAALL 382

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------- 459
                K   +  +V       +      +  K   I+D   RQ+ +I+            
Sbjct: 383 FFERGK---QGDEVLY--QEVVLPEELKKFSKGNPIDDIHFRQVREIWQQMKAYQQGKGK 437

Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             E  +FS          R   +      +   +K     +  D   +    LHQ+  L 
Sbjct: 438 KPEITEFSWFEKTEDLIKRGFDLAAKNPTTTEREKLPEPSVLLDRIIKNNEKLHQN--LL 495

Query: 518 ILKPMMQQIYPYG 530
            LK  + +   + 
Sbjct: 496 SLKQKLDEGVKWD 508


>gi|254831874|ref|ZP_05236529.1| N-6 DNA methylase [Listeria monocytogenes 10403S]
          Length = 539

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 85/525 (16%), Positives = 195/525 (37%), Gaps = 59/525 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGGSNID----LESFVKVAGYSF 80
           +  ++  V   F   + L      E  +      Y      + D    L  F      + 
Sbjct: 28  EAGEYNLVTQSFL-YKFLNDKFLFEIKKLHPNYDYEKLASLSEDEYTMLLDFELGTNAAH 86

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEKAGLLYKIC 137
            +            N  +  +++  + +D A      F   +      RL +  L+  I 
Sbjct: 87  LHPRHLIEDLYKHQNEDDFAKTFDDTLNDIAVENNSIFSVHTAGNSDIRLFEERLINDIV 146

Query: 138 KN----------------FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           ++                    +           S I+E++I+ +  +      ++ TP 
Sbjct: 147 RDSSMRNDVAKQIIAKLALVKFDEVIFDQGFDFFSTIFEYMIKDYNKDGGGKYAEYYTPH 206

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  + + +L+  D+    ++       YDP+ G+G  L +  + +            + 
Sbjct: 207 SVAKIMSEILIGDDEPKSVKA-------YDPSAGSGTLLMNVASKIG--------TDKVS 251

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            + Q++  ++  +         L  +       NI QG+T+ ++    K+  Y +SNPPF
Sbjct: 252 IYSQDISQKSSNLLRL-----NLILNNLSHSINNIVQGNTIIENRHADKKMDYIVSNPPF 306

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRA 356
              + + ++ +    +  E    G      S        +LF+ H+   L    N  G+A
Sbjct: 307 KLDFSEWREQITTLPEFTERFFAGVPNIPNSAKDKMAIYLLFIQHIIYSL----NNTGKA 362

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+ +  +        E +IR+ L++N  ++ +V++P+++F  T     +  +      
Sbjct: 363 AVVVPTGFITAQS--GIEKKIRKHLIDNRWLKGVVSMPSNIFATTGTNVSVIFIDKTNNT 420

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
           +   KV L++A+ L T +++   ++ +++ +  +QI+  +  +E    FS  + Y     
Sbjct: 421 DDA-KVVLVDASKLGTKVKDGKSQKTLLSSEDEKQIIQAFQMQEARDDFSVTVTYNEIKE 479

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           ++  +         ++   L + E +   +K     QS +L+  K
Sbjct: 480 KKYSLSASQYFDVKIEYVELTQEEFNNQMKKFQCTLQSLFLEDNK 524


>gi|167461218|ref|ZP_02326307.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381544|ref|ZP_08055522.1| type I restriction-modification system methyltransferase
           subunit-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154502|gb|EFX46800.1| type I restriction-modification system methyltransferase
           subunit-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 485

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/497 (17%), Positives = 183/497 (36%), Gaps = 66/497 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     TR      +L      +    F        ++  +   +        
Sbjct: 35  LLFIKGLDDI--ETRKENEAAFLGLTYEGM----FPNDKQDLRWSRFKNMEANQMYNLVL 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   +  + +  +     I ++    +L KI     GI++           +
Sbjct: 89  NGIFPFIKNLHQDGDSAYSKY-MEDAIFKIPTPQMLTKIVDGIDGIDME----KRDAKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 144 LYEYLLSKVATAGMN--GQFRTPRHIIEMMVRLM----------KPSPSDVIADPAMGSA 191

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  +V +  +         K     + +G +++     +    ML+  ++     
Sbjct: 192 GFLVAAQEYVKEHHADLFLHAGLKKHFNQDMFYGFDMDRTMLRIGAMNMLLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               NI+   +LS+     +++   L+NPPF  K   D DAV K+            + K
Sbjct: 247 --QPNIEYKDSLSEQNGDQEKYTMILANPPF--KGSLDYDAVSKDLLK---------ITK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L+L    GGR+A ++  S LF   +     EIR+ L++N  +EA+
Sbjct: 294 TKKTELLFLALILRSLKL----GGRSATIVPDSVLF--GSSKAHKEIRKELVDNHKLEAV 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR+ I  +  
Sbjct: 348 ISMPSGVFKPYAGVSTAVLIFTKTGA----GGTDQVWFYDMKADGYSLDDKRQQIEQNDI 403

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADI 502
             I++ + +      R+  + S ++D +        +           +       E  +
Sbjct: 404 PDIVERFENLQGEKTRKRTEQSFLVDVQEIRDNGYDLSINKYKEIEYKEVTYDHPREILL 463

Query: 503 TWRKLSPLHQSFWLDIL 519
             ++L    Q+   +++
Sbjct: 464 RIQQLEEEIQAGLEELV 480


>gi|268686736|ref|ZP_06153598.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627020|gb|EEZ59420.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 495

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/479 (15%), Positives = 171/479 (35%), Gaps = 39/479 (8%)

Query: 37  PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLG 92
              + +  +  ++  R    ++ + F   +I+ ++ V    +S    SE       + L 
Sbjct: 5   GVFVYKY-DFEVKKIRKEKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLF 63

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-P 147
                +        FS   +   +   F      +   G             +G      
Sbjct: 64  DDTLTDIAAHNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAI 123

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                   + I+E+LI+ + S       ++ TP  V  +   +L+  +      S     
Sbjct: 124 FAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD--- 180

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP+ G+G  L +  + + +         I     Q+         +   L+  L   
Sbjct: 181 -VYDPSAGSGTLLMNVAHAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN-- 233

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                  N+ QG+T+            K+F + +SNPPF   +   +D +E +       
Sbjct: 234 -------NVVQGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRERFF 286

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
              P +       M         +       G+AAIVL +  +        + +IR +L+
Sbjct: 287 AGIPKIKAKDKDKMEIYQLFIQHILFSLKENGKAAIVLPTGFITAQS--DIDKKIREYLV 344

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           EN ++  +V++P+++F  T     +  +        + KV LI+A+ L   I++   ++ 
Sbjct: 345 ENKMLAGVVSMPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKT 400

Query: 443 IINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +++ ++ ++I + + +++    FS ++ Y     +   +         +D   ++  E 
Sbjct: 401 VLSCEEEQKICNTFTNKQAVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 459


>gi|294677466|ref|YP_003578081.1| type I restriction-modification system RcaSBIV subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294476286|gb|ADE85674.1| type I restriction-modification system RcaSBIV, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 482

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/497 (16%), Positives = 162/497 (32%), Gaps = 59/497 (11%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L       R       + Y          + +        ++             
Sbjct: 33  LFLKYLHDLEGERRDRAELEGKTYAPIIDGRYRWDRWAAPKKNGVFDHDTAMTGDDLVRF 92

Query: 96  TRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               L  ++A F D A           +  F+   ++     +L  + +   G+      
Sbjct: 93  VDGELFPHLALFHDRATGPDTIEYKIGEV-FTELRSKFRSGYILRDVLEIVDGLAF-KTQ 150

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +S +YE  IRR G+       ++ TPR ++    A++           P +  T+
Sbjct: 151 ADKHELSALYETRIRRMGN-AGRNGGEYYTPRPLIRAMIAVV----------DPQIGETI 199

Query: 210 YDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           YD   G+ GFL +A +++       S ++       +GQE +   + + +  M++  +E+
Sbjct: 200 YDGAVGSAGFLCEAYDYLRRPDLSASDYETLQRRTFYGQEKKSLAYVIGIMNMVLHGIEA 259

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +   +       D+    R    L+NPPFG    ++                  
Sbjct: 260 PNIVHTNSLNEN----VLDIQEKDRHDIVLANPPFGGGERREVQQN-------------- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K  + + LFL H   KL      GGRAA+V+ ++ L N    S    +RR LL+   
Sbjct: 302 FPIKSGETAYLFLQHFIRKLRA----GGRAAVVIKNTFLSNTDNAS--VALRRELLDTCN 355

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  ++  P   F    + T +         ER      I    L         K   +ND
Sbjct: 356 LHTVLDCPQGTFQGAGVKTVVLFFEKGAPTER------IWFYQL--DPGRSLGKTNALND 407

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           D   + +++  +   G  + ++               ++     +   L   E  I    
Sbjct: 408 DDMAEFVEMQRTFATGAKAWVV--ERTAVDASTCDLSVKNPNAPEAETLRAPEEIIEAIL 465

Query: 507 LSPLHQSFWLDILKPMM 523
                 +  L+ ++ ++
Sbjct: 466 ARDAETAEILERIRGLL 482


>gi|308061791|gb|ADO03679.1| type I restriction enzyme M protein [Helicobacter pylori Cuz20]
          Length = 543

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/513 (14%), Positives = 168/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFMTLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNTELFNTKSTDETNIALFESISQCIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIARIIAKLLINE--------PTKSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SKDL    +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKDLKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +   
Sbjct: 371 IVPTGFISAKS--GVENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSIIFFKKTPSA-- 426

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 427 -NEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCALVSFNEITEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518


>gi|297192313|ref|ZP_06909711.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719705|gb|EDY63613.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 519

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 168/500 (33%), Gaps = 67/500 (13%)

Query: 13  NFIWKNAEDLWGD-FKHTDF-GKVILPFTLLRRLEC--ALEPTRSAVREKYLAFGGSNID 68
           + +W     L  D    +++  ++ L    L+  +    L   R +   +++        
Sbjct: 2   DRLWNYCNVLRDDGVSASNYLEQLSL-LVFLKMADETEQLNAHRPSADHEHMLPTAPEWQ 60

Query: 69  ---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                  + + G          L  LG   T  N  + ++   + A+   E+        
Sbjct: 61  GRGWPELIDLEGDPLEEAYSKLLIDLGRR-TDQNDHTTLSLIFNRARNHIEN-------- 111

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                 L   I       +         +    YE LI R  S+   GA  + TPR ++ 
Sbjct: 112 ---PTHLRRLIVDLIDKEKWRNSR--SDINGAAYEALIARSASDTKAGAGQYFTPRALIE 166

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----- 240
                +           P    T+ DP CGTGGFL  A  ++            L     
Sbjct: 167 SIVRCM----------RPTPYDTITDPACGTGGFLIAAYEYITREYGDDLPDEDLHRLRT 216

Query: 241 -VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G E+ P T  +     L+  L       +      G  L+K     +     L+NP
Sbjct: 217 ESIWGHEIVPATARLAAMNCLLHSLGDPTGEPIIDV---GDALAKP--PERHASLVLANP 271

Query: 300 PFGKK-------WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           PFG+K        E + +A ++++       F  G    ++  + FL H+  +L      
Sbjct: 272 PFGRKSGINVSGKEAEAEADDRDNVTYNRPDFWVGEQTTTNKQLNFLQHIGTQL----TD 327

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS- 411
            GRAA+++    L+ G AGS    +RR LL    +  ++ LP ++F+   +  ++     
Sbjct: 328 KGRAAVIVPDGVLYEGGAGSVGDLVRRELLTGYNLHTMLRLPENIFYAGGVKAHVLFFEA 387

Query: 412 --NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------DIYVSRE 460
               + ++       +   DL T  R   KK   +  +               D    +E
Sbjct: 388 VPGHRADDDPPHTTYVWTYDLRTDSRFTLKK-NPMKPEHLADFEKQAFDPSDPDRKHRKE 446

Query: 461 NGKFSRMLDYRTFGYRRIKV 480
           + +F R         +++ +
Sbjct: 447 SDRFRRHAAAELLAQKQVNL 466


>gi|291615456|ref|YP_003522564.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
 gi|291582518|gb|ADE16974.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
          Length = 486

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/504 (16%), Positives = 173/504 (34%), Gaps = 63/504 (12%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I      +RL+         VRE+     G  I+   F        ++  +   +     
Sbjct: 32  ITYLLFTKRLDEL-----HTVRERKANRLGKPIEDPIFSAKQQPLRWSRFKDREAGEMYE 86

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
             R+ +  +I    +  ++ +  F     +  +    LL ++      + +         
Sbjct: 87  LFRDEVFPFIKKLHEGRESAYSRF-MKDAVFVIPTPNLLQRVVTMLEALPME----DRDT 141

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+++ +  +        F TPR ++ +   L+          +P    T+ DP C
Sbjct: 142 KGDLYEYMLSKIATAG--QNGQFRTPRHIIKMMVELV----------APTPQDTIADPAC 189

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  A  ++ +          L         HG + +     +    M +  +E  
Sbjct: 190 GTCGFLVAAGEYLREHHPDIFHDAALRQHFNHGLFHGTDFDSSMLRIGAMNMTLHGVEDP 249

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             R L    Q+G T  +D     R+   L+NPPF       K +++ E    +L R    
Sbjct: 250 DIRGLDSLSQEG-TGIRD-----RYTVILANPPF-------KGSLDYESVAKDLLR---- 292

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L       +LFL     +L+     GGR A ++    LF   +     EIRR L+E+  +
Sbjct: 293 LTSTKKTELLFLALFLCQLKA----GGRCACIVPDGVLF--GSSKAHREIRRHLVEDHKL 346

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           + ++++P+ +F     ++T + I     T    G    +   D+     +   KR  + +
Sbjct: 347 DGVISMPSGVFKPYAGVSTAILIF----TRTDSGGTDQVWFYDMAADGFSLDDKREPVKE 402

Query: 447 DQRRQILDIYVSR----ENGKFSR--MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    IL  +  R    +  + ++   +        +  +          +         
Sbjct: 403 NDIPDILAKWKKRNPKKDTDRTAKAFFVPKAEIAENKYDLSINRYKEVQYEAVEYEPPLV 462

Query: 501 DITWRKLSPLHQSFWLDILKPMMQ 524
            +   +         L  L+ M+ 
Sbjct: 463 ILDQLEALETEIQQDLKELREMVG 486


>gi|210134633|ref|YP_002301072.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210132601|gb|ACJ07592.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 543

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 172/505 (34%), Gaps = 46/505 (9%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           +    +  +    + +L      +   ++ ++  Y F      +   L      N + + 
Sbjct: 65  IRDYKDFKKEEKEDFFLTLSDKKLPKLAYDELLNYLFEKHFYDNDLHLKLDAIFNRISNN 124

Query: 104 IASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDTVP 151
            A             A+FE      +    R      L    KNF+     + L      
Sbjct: 125 NAELFNTTSTDKTTIALFESVSQYINEESKRANFTRSLLDKLKNFNFKQAFLNLQNQQGY 184

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D   + I+E+LI+ +     E   ++ TP  +  +   LL++         P     +YD
Sbjct: 185 D-FFAPIFEYLIKDYNKAGGETYAEYYTPLSIASIIAKLLINE--------PTQSVKIYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ GTG  L    + +               + Q++  ++  +    +++  L    R  
Sbjct: 236 PSTGTGTLLMALAHQIGTT--------SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA 287

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +  N       SK+     +  Y +SNPPF   +  +   + +   +  LG   P +PK 
Sbjct: 288 IEGNTLTNPYHSKECHG--KMDYIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKN 343

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               M              +  G+ AI++ +  +        E++I R L++  L+  +V
Sbjct: 344 DKSKMPIYTLFFQHCLNMLSNKGKGAIIVPTGFISTKS--GVENKIVRHLVDGRLVYGVV 401

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P+ +F  T     +       + +   +V LI+A+ L         K+  +       
Sbjct: 402 CMPSQVFANTGTNVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTHLRPSDIDL 458

Query: 452 ILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR----- 505
           IL+ + ++ +   F  ++ +     +   +      +       +++ E +   +     
Sbjct: 459 ILETFQNKTQKADFCALVSFDEIIGKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518

Query: 506 --KLSPLHQSFWLDILKPMMQQIYP 528
              L    QS   +IL+ +    Y 
Sbjct: 519 LTSLFDESQSLQQEILETLGNLNYD 543


>gi|308063301|gb|ADO05188.1| type I restriction enzyme M protein [Helicobacter pylori Sat464]
          Length = 543

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/513 (14%), Positives = 169/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFITLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  + ++   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIANIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SKDL    +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKDLKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +   
Sbjct: 371 IVPTGFISAKS--GVENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSVIFFKKTPSA-- 426

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             KV LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 427 -NKVVLIDASKLGEECTENKNKKTRLRGSDIDLILETFQNKTQKADFCALVSFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518


>gi|332076170|gb|EGI86636.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41301]
          Length = 497

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 165/491 (33%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 214

Query: 228 ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +            + HG + +     +    M++  +E       +  I    
Sbjct: 215 KRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 267

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + +  + +                K     +LFL 
Sbjct: 268 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLS 316

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 317 LFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    +   D+     +   KR+ I+D+    I++ +   
Sbjct: 371 YAGVSTVILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHL 426

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +          +K      E  +           
Sbjct: 427 EKEAERQRTDQSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 486

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 487 AGLAELEKLLK 497


>gi|295401869|ref|ZP_06811833.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110990|ref|YP_003989306.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294976123|gb|EFG51737.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216091|gb|ADP74695.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 643

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 158/404 (39%), Gaps = 45/404 (11%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +L   + S   +   +F     + T   +E+  L YK+        L      +   + 
Sbjct: 72  QSLYRTLESIEPSLSGVF----LNDTFKNIEETTL-YKLVVLLERYGLTKTEYQNNEATT 126

Query: 158 IY-EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++ E LI+     ++       TP  +  L    L             +  ++YD T G 
Sbjct: 127 VFFETLIK---ELLASSKGYDFTPDGLSQLMIQAL-----------KPITGSVYDGTAGI 172

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
              L DA  +    G        +  +GQE+  E + +    + +  +  + + D+    
Sbjct: 173 ANILVDAYRYAKGKGKD------ISVYGQEINEELYVIGKLNLFVNHILPE-QGDMKLGD 225

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGS 335
                   +     +F Y + N PFG +    + A+     N    RF    LP  S G 
Sbjct: 226 TIRDPKWLENGRLMQFDYIMMNFPFGLRDWGYEFAI-----NDPYHRFELYALPSKSQGD 280

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H    L    N  G+AA+++    L  G A   E +IR  LL++D+IE+IV+LP 
Sbjct: 281 YSFILHALASL----NQEGKAALIVPFGTLVRGAA---ERKIRSILLKDDVIESIVSLPN 333

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF  T I   L +L+  K   ++GKVQ INA   +       + ++ +     ++I++ 
Sbjct: 334 NLFSGTGIQVALLLLNKHKPSHKKGKVQFINAEGDYER----TRTQKYLTSKHVQKIIET 389

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
             + EN  K+SR++           +   L    +   T   ++
Sbjct: 390 LEAYENKEKYSRIVTIDEIAENNWDLNPSLYFIHVELDTEFGKI 433


>gi|15900769|ref|NP_345373.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae TIGR4]
 gi|15902834|ref|NP_358384.1| type I restriction-modification system M subunit [Streptococcus
           pneumoniae R6]
 gi|111656838|ref|ZP_01407685.1| hypothetical protein SpneT_02001902 [Streptococcus pneumoniae
           TIGR4]
 gi|116515872|ref|YP_816267.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae D39]
 gi|148984620|ref|ZP_01817888.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148988313|ref|ZP_01819760.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993698|ref|ZP_01823145.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|148997030|ref|ZP_01824684.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|149002423|ref|ZP_01827357.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|149007169|ref|ZP_01830833.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010480|ref|ZP_01831851.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484773|ref|ZP_02709718.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1873-00]
 gi|168485835|ref|ZP_02710343.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1087-00]
 gi|168490319|ref|ZP_02714518.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae SP195]
 gi|168490977|ref|ZP_02715120.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493039|ref|ZP_02717182.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575544|ref|ZP_02721480.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae MLV-016]
 gi|169832734|ref|YP_001694340.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Hungary19A-6]
 gi|182683805|ref|YP_001835552.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae CGSP14]
 gi|221231662|ref|YP_002510814.1| type I RM modification enzyme [Streptococcus pneumoniae ATCC
           700669]
 gi|225854392|ref|YP_002735904.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae JJA]
 gi|225856550|ref|YP_002738061.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae P1031]
 gi|225861221|ref|YP_002742730.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650540|ref|ZP_04524792.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822643|ref|ZP_04598488.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229447|ref|ZP_06963128.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254225|ref|ZP_06977811.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503107|ref|YP_003725047.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303260412|ref|ZP_07346381.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP-BS293]
 gi|303262769|ref|ZP_07348707.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265058|ref|ZP_07350972.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS397]
 gi|303267632|ref|ZP_07353470.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS457]
 gi|303269990|ref|ZP_07355722.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS458]
 gi|14972360|gb|AAK75013.1| putative type I restriction-modification system, M subunit
           [Streptococcus pneumoniae TIGR4]
 gi|15458387|gb|AAK99594.1| Type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae R6]
 gi|116076448|gb|ABJ54168.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae D39]
 gi|147756730|gb|EDK63770.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147759360|gb|EDK66352.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|147761207|gb|EDK68174.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764961|gb|EDK71890.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923011|gb|EDK74126.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147925994|gb|EDK77068.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927778|gb|EDK78801.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|168995236|gb|ACA35848.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042062|gb|EDT50108.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629139|gb|ACB90087.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae CGSP14]
 gi|183570929|gb|EDT91457.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1087-00]
 gi|183571347|gb|EDT91875.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae SP195]
 gi|183574577|gb|EDT95105.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC0288-04]
 gi|183577032|gb|EDT97560.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578644|gb|EDT99172.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae MLV-016]
 gi|220674122|emb|CAR68641.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           ATCC 700669]
 gi|225723691|gb|ACO19544.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae JJA]
 gi|225726174|gb|ACO22026.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae P1031]
 gi|225728274|gb|ACO24125.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238702|gb|ADI69833.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794017|emb|CBW36415.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           INV104]
 gi|301799875|emb|CBW32451.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           OXC141]
 gi|301801712|emb|CBW34418.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           INV200]
 gi|302636091|gb|EFL66588.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638447|gb|EFL68913.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP-BS293]
 gi|302640481|gb|EFL70896.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS458]
 gi|302642831|gb|EFL73140.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS457]
 gi|302645418|gb|EFL75651.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS397]
 gi|332073216|gb|EGI83695.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17570]
          Length = 497

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 165/491 (33%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 214

Query: 228 ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +            + HG + +     +    M++  +E       +  I    
Sbjct: 215 KRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 267

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + +  + +                K     +LFL 
Sbjct: 268 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLS 316

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 317 LFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    +   D+     +   KR+ I+D+    I++ +   
Sbjct: 371 YAGVSTAILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHL 426

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +          +K      E  +           
Sbjct: 427 EKEAERQRTDQSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 486

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 487 AGLAELEKLLK 497


>gi|332201350|gb|EGJ15420.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368]
 gi|332204889|gb|EGJ18954.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 460

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 165/491 (33%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 10  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 69

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 70  AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 129

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 130 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 177

Query: 228 ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +            + HG + +     +    M++  +E       +  I    
Sbjct: 178 KRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 230

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + +  + +                K     +LFL 
Sbjct: 231 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLS 279

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 280 LFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 333

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    +   D+     +   KR+ I+D+    I++ +   
Sbjct: 334 YAGVSTAILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHL 389

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +          +K      E  +           
Sbjct: 390 EKEAERQRTDQSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 449

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 450 AGLAELEKLLK 460


>gi|126665709|ref|ZP_01736690.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
 gi|126629643|gb|EBA00260.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
          Length = 494

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 169/495 (34%), Gaps = 79/495 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +          RE+       
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD---------REQEWEVFYD 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS---DNAKAIFEDFDFSS 122
           +       ++   ++    E            N L + + +     D+ + +     F  
Sbjct: 52  DYKSPLPEQLRWRNWAADPEGMTGDDLKDFIDNTLFTGLQNLEPAGDDYRGVVIRNVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   L+ ++            +     + ++YE +++   S  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLMRQVINKLQSGVNFNKSAERHELGDMYEQILKDLQSAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPI 239
           V       +           P +   + DP CGTGGFLT  ++H           +    
Sbjct: 170 VTQFMVNRV----------DPKLEEKVMDPACGTGGFLTCTIDHKRTRYVQTPQDEQTLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +P  H +    +++  +E      +   I+  +TL++        +R    +
Sbjct: 220 RTIIGVEKKPLPHLLATTNLILHGIE------VPDQIKHDNTLARPLISWGPKERVDIII 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E            P   +  + + LF+    + L      GGRA
Sbjct: 274 ANPPFGG---MEEDGIETNF---------PAAFRTRETADLFMTLFIHLLR----NGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+VL    LF       ++ ++  LL    +  IV LP  +F   T I T L   +  K 
Sbjct: 318 AVVLPDGFLF---GEGMKTRLKEKLLNECNLHTIVRLPNGVFSPYTGIKTNLLFFTKGKP 374

Query: 416 EERRGKVQLINATDL----WTSIRNEGKKRRIINDDQRRQI------LDIYVSRENGKFS 465
            E       +   +          N+ K  R   ++ + +I       D + SRE  + +
Sbjct: 375 TEN------VWYYEHPYPDGVKSYNKTKPMRF--EEFQTEINWWGSEADGFTSREETEQA 426

Query: 466 RMLDYRTFGYRRIKV 480
             +       R   +
Sbjct: 427 WKVSIDDIKARNYNL 441


>gi|148262629|ref|YP_001229335.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146396129|gb|ABQ24762.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 541

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/543 (16%), Positives = 190/543 (34%), Gaps = 71/543 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF---------VKVAG 77
              +F  +I    L + +          +  K         ++  +         +K++ 
Sbjct: 29  DGNEFK-IITQVFLYKFMNDKFGYEVKEMEPKLKKAAIWEQEIAKYSDKDYEMLLLKMSP 87

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFDFSSTIARLEKAGLLYKI 136
            S     E+ L  L   + R N   +   F D  + I   + D  S          L+  
Sbjct: 88  DSARLKREHFLPRL---HNRQNEGEFAKLFDDTLRDIAIFNNDIFSVKTGTGAKVTLFDE 144

Query: 137 CKNFSG----------------IELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             NF                  I    + +        S I+E+LI+ +  +      ++
Sbjct: 145 LSNFITDSSRRDDFCRAIITQLIPFSFEKIFHQKLDFFSTIFEYLIKDYNKDGGGKYAEY 204

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V  +  A+L+D         P    T YDP+ G+G  L +  + + +        
Sbjct: 205 YTPHAVSKIMAAILVD--------KPVKNVTCYDPSAGSGTLLMNLAHAIGE-------- 248

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFH 293
                + Q++  ++ +     ML   L  +      +NI QG+T+             F 
Sbjct: 249 DRCTIYSQDISQKSTS-----MLRLNLILNNLVHSIQNIIQGNTMLTPYHKSGDKLMTFD 303

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y +SNPPF   +   ++ +E +          P +P      M   +     +    +  
Sbjct: 304 YVVSNPPFKLDFSDFRNDLETKQNRDRFFAGIPKIPNKDKDKMAIYLLFIQHIMFSLSAK 363

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AAIV+ +  +        E +IR  L+   ++  +V++P+++F  T     +  L   
Sbjct: 364 GKAAIVVPTGFITAQS--GIEKKIREKLVVAKMLRGVVSMPSNIFATTGTNVSVLFLDKT 421

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
            T   +G + L++A+ L T+++    ++ +++  +   I+  +   +    F+ ++ Y  
Sbjct: 422 NT---KGDIVLMDASKLGTTVKEGKNQKTVLSVAEEELIIKTFNDHKAVEDFTVVVSYEQ 478

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADIT----WRKLSPL---HQSFWLDILKPMMQQ 525
              +   +         ++ T +   E        W+ L  L    Q    +I K ++  
Sbjct: 479 IKEKNYSLSAGQYFDVKIEYTDITPKEFTAKMAGYWKNLDQLFGESQKLEKEIKKQLVGL 538

Query: 526 IYP 528
            Y 
Sbjct: 539 KYE 541


>gi|331006857|ref|ZP_08330112.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
 gi|330419332|gb|EGG93743.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
          Length = 493

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 162/411 (39%), Gaps = 70/411 (17%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + N   +L++  A    N +       FS     ++   LL ++    + I+    +   
Sbjct: 83  NNNLIPDLKTLTAPIDSNPRGYVVKEAFSDAFNYMKNGTLLRQVVNKLNEIDFT-SSEER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE +++   S  +  A +F TPR V      ++          +P +  ++ DP
Sbjct: 142 HLFGDLYEQILKDLQSAGN--AGEFYTPRAVTRFIVQMI----------NPQLGESVLDP 189

Query: 213 TCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  + + ++D     +           G E +   H +C   M++  +E    
Sbjct: 190 ACGTGGFLACSADLLSDQVGGDTDKYNLFQESLRGVEKKQLPHLLCTTNMMLHGIE---- 245

Query: 270 RDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             + KNI+ G+TLSK L       +    +SNPPFG     ++D +EK         F P
Sbjct: 246 --VPKNIRHGNTLSKQLSSIDEDDQVDVVVSNPPFGG---MEEDGIEK---------FFP 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              +  + + LFL ++   L    N  GRAA+VL    LF       +++I++ LLE   
Sbjct: 292 AEMQTRETADLFLQYIVEIL----NEKGRAAVVLPDGTLF---GEGVKTKIKKMLLEECN 344

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATD----LWTSIRNEGKKR 441
           +  +V LP  +F   T+I T +      K        + I   +          N+ K  
Sbjct: 345 LHTLVRLPNSVFAPYTSIKTNILFFEKGKP------TKEIWYYEVPLPEGVKAFNKTKPM 398

Query: 442 RIINDDQRRQILDIY------------VSRENGKFSRMLDYRTFGYRRIKV 480
           ++   +      + +             +R   +F+  +D +T   R   +
Sbjct: 399 KL---EDFAACTEWWGEGKNIKAKTKRKNRVENEFAWKVDIQTIIDRNYNL 446


>gi|108562863|ref|YP_627179.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107836636|gb|ABF84505.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 543

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/539 (14%), Positives = 177/539 (32%), Gaps = 64/539 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +             
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNKEEKEDFFITLTDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFE---------------DFDFS 121
              +  LS L   +  +N     L++     S N   +F                    +
Sbjct: 91  LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESVSQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               R     +L    K F+     + L      D   + I+E+L++ + +  +    ++
Sbjct: 151 EESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYD-FFAPIFEYLLKDYNNAGTGKYAEY 209

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +  +   LL++         P     +YDP+ GTG  L    + +          
Sbjct: 210 YTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------T 253

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                + Q++  ++  +    +++  L    +  +  N       SK+     +  + +S
Sbjct: 254 NSCTLYAQDISQKSLRMLKLNLILNDLTHSLKNAIEGNTLTNPYHSKECHG--KMDFIVS 311

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF   +  +   + +   +  LG   P +PK     M              +  G+ A
Sbjct: 312 NPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSHKGKGA 369

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I++ +  +        E++I R L++  L+  +V +P+ +F  T     +       + +
Sbjct: 370 IIVPTGFISAKS--GVENKIVRHLVDERLVYGVVCMPSQVFANTGTNVSIIFFQKTPSAK 427

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
              +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     +
Sbjct: 428 ---EVVLIDASKLGEEYTENKNKKTRLRTSDIGLILETFQNKTQKADFCALVSFDEITEK 484

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWR-------KLSPLHQSFWLDILKPMMQQIYP 528
              +      +       +++ E +   +        L    QS   +IL+ +    Y 
Sbjct: 485 NYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILETLGNLNYD 543


>gi|302037934|ref|YP_003798256.1| type I restriction-modification system, methyltransferase subunit
           [Candidatus Nitrospira defluvii]
 gi|300605998|emb|CBK42331.1| Type I restriction-modification system, methyltransferase subunit
           [Candidatus Nitrospira defluvii]
          Length = 484

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 152/442 (34%), Gaps = 59/442 (13%)

Query: 38  FTLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
              L+ L+   +      +   ++Y          ES+    G       + +L+    T
Sbjct: 32  LLFLKYLDALEQDKADEAKLEGKRYSFILEKPYRWESWAAPKGKDGKLDHDVALTGNDLT 91

Query: 95  NTRN-NLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
              N  L  Y+ SF   A           +  F     +++    L +I  +   +    
Sbjct: 92  EFVNLKLFPYLYSFKQKASGPNTIEYKIGEI-FGEIKNKIQSGYNLREIIDHIDELRFR- 149

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S++YE  I+  G+       ++ TPR ++     ++           P +  
Sbjct: 150 SQKEKHELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAMVQVV----------KPKLGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +YD  CG+ GFL +A +++   G       K       +G+E +   + + +  M++  
Sbjct: 199 RIYDGACGSAGFLCEAYDYLTAKGDLSTKDLKTLQEKTFYGKEKKSLAYVIAIMNMILHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+      +   +       D+    R+   L+NPPFG K  K+               
Sbjct: 259 IEAPNIIHTNTLTEN----LADIQEKDRYDVVLANPPFGGKERKEVQQN----------- 303

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 +  + + LFL H    L+     GGR  +V+ ++ L N    S    +R+ LLE
Sbjct: 304 ---FPIRTGETAFLFLQHFIKSLKA----GGRGGVVIKNTFLSNTDNAS--VSLRKLLLE 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  +  ++  P   F    + T +          +      +    L         K   
Sbjct: 355 SCNLHTVLDCPGGTFQGAGVKTVVLFFEKGAPTCK------VWYYQL--DPGRSLGKTNP 406

Query: 444 INDDQRRQILDIYVSRENGKFS 465
           +NDD  ++ + +  S  +   S
Sbjct: 407 LNDDDLKEFVKLQKSFADSPKS 428


>gi|262375870|ref|ZP_06069101.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145]
 gi|262308964|gb|EEY90096.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145]
          Length = 498

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/506 (15%), Positives = 167/506 (33%), Gaps = 66/506 (13%)

Query: 38  FTLLRRLECAL--EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              +RRL+     +  ++   +  +       + +        +  + ++          
Sbjct: 40  LLFIRRLDEIQITKEKKANRLKTAVEKPIFTPEQDHLRWSKFITLGDPTQLY------DT 93

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             N +  +I S        +           +    LL K+    + + +          
Sbjct: 94  IANEVFPFIKSIGSEDDTTYSH-HMKDARFTIPTPALLTKVVDLLAEVPMD----DKDTK 148

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE+++ +  S        F TPR ++ +   L+           P    T+ DP CG
Sbjct: 149 GDIYEYMLGKIASAG--QNGQFRTPRHIIKMIVELM----------QPKPTDTICDPACG 196

Query: 216 TGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL  A  ++ +  S          K        G + +     +    M++  +E+ 
Sbjct: 197 TAGFLVAASEYLNEHHSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVEN- 255

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +   + S          +F   L+NPPF    + +  A           +    
Sbjct: 256 -----PRIENRDSLSEAHSHIESQFSLILANPPFAGSLDYESCA-----------KNIQA 299

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LFL      L+     GGRAAI++    LF   +     ++R+ ++E   +
Sbjct: 300 IVKTKKTELLFLALFLRILKT----GGRAAIIVPDGVLF--GSSKAHKDLRQKIVEEQKL 353

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINAT------DLWTSIRNEGKK 440
           EAI+++P+ +F     ++T + I +  +T     KV   +        D   +  +  K 
Sbjct: 354 EAIISMPSGVFKPYAGVSTAILIFTKTETGG-TDKVWFYDMQADGYSLDDKRNELDTSKH 412

Query: 441 RRIINDDQRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                 D   +   L+    R+  + S ++D          +        + ++      
Sbjct: 413 ENNNIPDIIARFKNLEAESDRKATEQSFLVDKADIAANGYDLSINRYKEVVYEQVEYEAP 472

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQ 524
              +   +L        ++ LK M++
Sbjct: 473 SKILADLELLEQEILKGMNELKEMLK 498


>gi|307127562|ref|YP_003879593.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 670-6B]
 gi|306484624|gb|ADM91493.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 670-6B]
 gi|332077301|gb|EGI87763.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 497

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 164/491 (33%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 214

Query: 228 ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +            + HG + +     +    M++  +E       +  I    
Sbjct: 215 KRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 267

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + +  + +                K     +LFL 
Sbjct: 268 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLS 316

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 317 LFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    +   D+     +   KR+ I D+    I++ +   
Sbjct: 371 YAGVSTAILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPIRDNDIPDIIERFHHL 426

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +          +K      E  +           
Sbjct: 427 EKEAERQRTDQSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 486

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 487 AGLAELEKLLK 497


>gi|254303653|ref|ZP_04971011.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323845|gb|EDK89095.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 498

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/499 (18%), Positives = 196/499 (39%), Gaps = 60/499 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+   +  +   +EK LA    N D +            ++   L         
Sbjct: 35  LIFMKRLD---QEEQRKEKEKQLASIFGNTDEKFIFDENHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  D+ ++IF  +   + I ++    +L         I  +P  V D   
Sbjct: 92  VRNEAFEFIKNLDDDKESIFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLATSG--KNGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++              +K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 258 ------TPKLKRIDSLSTDYSEENDYTLILANPPF-------KGSVDESLLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLF--GASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +EA++++P+ +F     ++T + I +        G    +   D+     +   KR  + 
Sbjct: 355 LEAVISMPSGVFKPYAGVSTGILIFTK----TGNGGTDNVWFYDMTADGYSLDDKRNSVE 410

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEAD 501
           ++    I++ + + +N K  +  D   F  ++  V     +S      +    +   E +
Sbjct: 411 ENDIPDIIERFSNLKNEKDRKRTDKSFFVSKQEIVDNDYDLSINKYKEIVYEKVEYEEPE 470

Query: 502 ITWRKLSPLHQSFWLDILK 520
           +  +KL  L +S   ++ +
Sbjct: 471 VILQKLEELSKSIDENLKE 489


>gi|217033265|ref|ZP_03438696.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10]
 gi|216944206|gb|EEC23631.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10]
          Length = 543

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/513 (14%), Positives = 170/513 (33%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFSEEEKEDFFLTLIDERLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDETTIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N    S  SK+     +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNSYHSKECKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              N  G+ A+
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLNNKGKGAM 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +E+ 
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSVIFFKKTPSED- 427

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 428 --EVILIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCALVSFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518


>gi|84616896|emb|CAJ13790.1| type I restriction-modification system, M subunit [Desulfococcus
           multivorans]
          Length = 488

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 144/374 (38%), Gaps = 57/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  + V GY     S +  S+          E  I   +++     +        
Sbjct: 40  DDKEQEWQLTVPGYKSPLPSRFRWSSWAKNPEGMTGEELIDFVNNDLFPALKKLATAAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE ++    S 
Sbjct: 100 SPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDRHLFNDIYEKILSDLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P + +T+ DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTQFMVDML----------DPQLGQTILDPACGTGGFLTCAIEHLNK 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---K 284
                +    L    HG E +P  H + +  M++  +      D+  N++  +TLS   K
Sbjct: 208 QVKTAEDRKRLQECIHGVEKKPLPHMLAMTNMMLHGI------DVPTNVRHDNTLSRPLK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +E            P   +  + + LF+  + +
Sbjct: 262 DYGPRDRVDLIITNPPFGG---MEEDGIENNF---------PRKYQTRETADLFMALIMH 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+   +  G+AA+VL    LF       ++ ++R LLE   +  IV LP  +F   T+I
Sbjct: 310 LLK---HDTGKAAVVLPDGFLFGEGT---KTNLKRELLEEFNLHTIVRLPKGVFSPYTSI 363

Query: 404 ATYLWILSNRKTEE 417
           AT +         +
Sbjct: 364 ATNILFFEKGGPTK 377


>gi|148264152|ref|YP_001230858.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146397652|gb|ABQ26285.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/466 (15%), Positives = 158/466 (33%), Gaps = 75/466 (16%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + IW        ++ L    +   +         ++RL+            K
Sbjct: 3   TGENKAKIDKIWDAFWTGGISDSLR-VIEQMSY------LLFIKRLDDL-------HTAK 48

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFE 116
                     +E  +          S +     G         +  +I +   N ++ + 
Sbjct: 49  EKKANRLGKPIEEPIFGPKQDHLRWSRFREFEAGEMFRVVSQEVFPFIKNLHGNEESAYA 108

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                  I  +    LL ++ +  S + +           ++YE+++ +  +        
Sbjct: 109 R-HMKDAIFMIPTPSLLERVVEQISQVPME----DRDTKGDLYEYMLSKLTTAGRN--GQ 161

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR ++ +   L+           P     + DP CGT GFL  A  ++ +       
Sbjct: 162 FRTPRHIIKMMVELM----------QPRPDDIICDPACGTAGFLVAAGEYLREHHGDLFH 211

Query: 237 PPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              L  H       G + +     +    M++  +E       +  I+   +LS      
Sbjct: 212 NEKLKKHFNEKLFNGFDFDSTMLRIASMNMMLHGVE-------NPAIEARDSLSSAADIA 264

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   L+NPPF  K   D+D V K+              K     +LF+  +   L+  
Sbjct: 265 DAYTLILANPPF--KGSLDEDTVAKDLLR---------TVKTKKTELLFIALMLRLLK-- 311

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GGR A+++    LF   +     ++R+ L++   +EA++++P+ +F     ++T + 
Sbjct: 312 --PGGRCAVIVPDGVLF--GSSKAHLDLRKILVDGHKLEAMISMPSGVFRPYAGVSTGIL 367

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           I +        G    +   D+     +   KR  +  +    +++
Sbjct: 368 IFTK----TNSGGTDHVWFYDMQADGFSLDDKRNPVEQNDIPDVVE 409


>gi|149026371|ref|ZP_01836526.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP23-BS72]
 gi|147929333|gb|EDK80332.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP23-BS72]
          Length = 497

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 161/481 (33%), Gaps = 69/481 (14%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDFDFSS----TI 124
           +   G    +  EY  ST  +      +       I  F  N K   +D  FS      I
Sbjct: 57  IPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDTAFSRYMREAI 116

Query: 125 ARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            ++ K   L K              ++   D      + +IYE+L+ +  +        F
Sbjct: 117 FQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLSTAG--KNGQF 174

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++ +   L+           P +   + DP  G+ GFL  A  ++       +  
Sbjct: 175 RTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYLKRKKDEWETN 224

Query: 238 -------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                     + HG + +     +    M++  +E       +  I    +LS+D     
Sbjct: 225 TDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDSLSQDNEEAD 277

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   L+NPPF    + +  + +                K     +LFL      L+   
Sbjct: 278 KYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLSLFLRTLKP-- 324

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F     ++T + I
Sbjct: 325 --GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAILI 380

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGK 463
            +        G    +   D+     +   KR+ I D+    I++ +        R+   
Sbjct: 381 FTK----TGNGGTDKVWFYDMKADGLSLDDKRQPIRDNDIPDIIERFHHLEKEAERQRTD 436

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            S  +           +          +K      E  +             L  L+ ++
Sbjct: 437 QSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLAELEKLL 496

Query: 524 Q 524
           +
Sbjct: 497 K 497


>gi|261378715|ref|ZP_05983288.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685]
 gi|269144869|gb|EEZ71287.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685]
          Length = 533

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 181/522 (34%), Gaps = 47/522 (9%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALE----PTRS 53
           MTE  FT    +L + +    A    G+    +F  +I    L + L    +      R 
Sbjct: 1   MTEQYFTEQTKALIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
              ++ + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  ENPDEPIEFVNMDIEGKTAVLKPEHSIKYLSEQQNGADFAKLFDDTLTDIAACNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                     K+F + +SNPPF   +   +D +E E          P +       M   
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEDEENCERFFAGIPKIKPKKKEKMEIY 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 +       G+AAIVL +  +        + +IR  L+EN ++  +V++P+++F 
Sbjct: 342 QLFIQHILFSLKENGKAAIVLPTGFITAQS--GIDKKIREHLVENKMLAGVVSMPSNIFA 399

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     +  +        +  V LI+A+ L T    +  ++ +++  + ++I + +  +
Sbjct: 400 TTGTNVSILFIDK----ANKDGVVLIDASGLGTKTSVDENQKTVLSRVEEQKICNTFTHK 455

Query: 460 E-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    FS ++ Y     +   +         +D   ++  E 
Sbjct: 456 QVVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDISAEEF 497


>gi|207092295|ref|ZP_03240082.1| type I restriction enzyme M protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 543

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/514 (15%), Positives = 170/514 (33%), Gaps = 57/514 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDL------------ 69
              ++  +I    L + L    E        +   + Y  F     +             
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNKEEKEDFFITLTDKRLPK 90

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNAKAIFEDF--DFS 121
            ++ ++  Y F      +   L      N + S  A             A+FE      +
Sbjct: 91  LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               R      L    K F+     + L      D   + I+E+L++ + S+      ++
Sbjct: 151 EESKRANFTRSLLDKLKKFNFKQAFLNLQNQQGYD-FFAPIFEYLLKDYNSDKGGKYAEY 209

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +  +   LL++         P     +YDP+ GTG  L    + +          
Sbjct: 210 YTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------T 253

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                + Q++  ++  +    +++  L    +  +  N       SKD     +  Y +S
Sbjct: 254 DSCTLYAQDISQKSLRMLKLNLILNDLTHSLKNAIEGNTLTNPYHSKDYKG--KMDYIVS 311

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF   +  +   + +   +  LG   P +PK     M              +  G+ A
Sbjct: 312 NPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSHKGKGA 369

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I++ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +E+
Sbjct: 370 IIVPTGFISAKS--GVENKIVRHLVDERLVYGVICMPSQVFANTGTNVSIIFFQKTPSED 427

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR 476
              +V LI+A+ L         K+  +       IL+ + ++     F  ++ +     +
Sbjct: 428 ---EVVLIDASKLGEEYTENKNKKTRLRTSDIGLILETFQNKTPKADFCALVSFDEITEK 484

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
              +              +++ E +   ++ S  
Sbjct: 485 NYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSE 518


>gi|208434384|ref|YP_002266050.1| type I restriction enzyme M protein [Helicobacter pylori G27]
 gi|208432313|gb|ACI27184.1| type I restriction enzyme M protein [Helicobacter pylori G27]
          Length = 537

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 164/480 (34%), Gaps = 39/480 (8%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           +    +  +    + +L      +   ++ ++  Y F      +   L      N + S 
Sbjct: 59  IRDYKDFNKEEKEDFFLTLSDKKLPKLAYDELLSYLFEKHFNDNDLYLKLDAIFNRISSN 118

Query: 104 IASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDTVP 151
            A             A+FE      +    R      L    KNF+     + L      
Sbjct: 119 NAELFNTKSTDKTTIALFESISPYINEESKRANFTRALLDKLKNFNFKQAFLNLQNQQGY 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D   + I+E+L++ + +       ++ TP  +  +   LL+D         P     +YD
Sbjct: 179 D-FFAPIFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLIDE--------PTQNVKIYD 229

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ GTG  L    + +               + Q++  ++  +    +++  L    R  
Sbjct: 230 PSAGTGTLLMALAHQIG--------TNSCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA 281

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +  N       SK+     +  + +SNPPF   +  +   + +   +  LG   P +PK 
Sbjct: 282 IEGNTLTNPYHSKECHG--KMDFIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKN 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               M              +  G+ AI++ +  +        E++I R L++  L+  +V
Sbjct: 338 DKSKMPIYTLFFQHCLNMLSNKGKGAIIVPTGFISAKS--GVENKIVRHLVDERLVYGVV 395

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P+ +F  T     +       + +   +V LI+A+ L         K+  +       
Sbjct: 396 CMPSQVFANTGTNVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRTSDIDL 452

Query: 452 ILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           IL+ + ++     F  ++ +     +   +      +       +++ E +   ++ S  
Sbjct: 453 ILETFHNKTPKADFCALVSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 512


>gi|317009085|gb|ADU79665.1| type I restriction enzyme M protein [Helicobacter pylori India7]
          Length = 544

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/507 (15%), Positives = 175/507 (34%), Gaps = 45/507 (8%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + +    +  +    + +L      +   ++ ++  Y F      +   L      N + 
Sbjct: 63  KTIRDYKDFKKEEKEDFFLTLSDKKLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRIS 122

Query: 102 SYIASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDT 149
           S  A             A+FE      +    R     +L    KNF+     + L    
Sbjct: 123 SNNAELFNTKSTDKTTIALFESVSQYINEESKRANFTRVLLDKLKNFNFKQAFLNLQNQQ 182

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D   + I+E+LI+ + +       ++ TP  +  +   LL+          P     +
Sbjct: 183 GYD-FFAPIFEYLIKDYNNNSGGTYAEYYTPLSIASIIAKLLV--------SVPTQSVKI 233

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ GTG  L    + +               + Q++  ++  +    +++  L    +
Sbjct: 234 YDPSAGTGTLLMALAHQIG--------TDSCTLYAQDISQKSLRMLKLNLILNDLTHSLK 285

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             +  N       SKD     +  Y +SNPPF   +  +   + +   +  LG   P +P
Sbjct: 286 NAIEGNTLTNPYHSKDFKG--KMDYIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIP 341

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     M              +  G+ AI++ +  +        E++I R L++  L+  
Sbjct: 342 KNDKSKMPIYTLFFQHCLNMLSHKGKGAIIVPTGFISAKS--GIENKIVRHLVDEKLVYG 399

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +V +P+ +F  T     +     +KT     +V LI+A+ L         K+  +  +  
Sbjct: 400 VVCMPSQVFANTGTNVSIIFF--KKTPSENEEVILIDASKLGEEYTENKNKKTRLRKNDI 457

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR--- 505
             IL+ + ++ +   F  ++ +     +   +      +       +++ E +   +   
Sbjct: 458 DLILETFQNKTQKADFCALVSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYS 517

Query: 506 ----KLSPLHQSFWLDILKPMMQQIYP 528
                L    QS   +IL+ +    Y 
Sbjct: 518 SELTSLFDESQSLQQEILETLGNLNYD 544


>gi|57168617|ref|ZP_00367749.1| HsdM [Campylobacter coli RM2228]
 gi|305432345|ref|ZP_07401508.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter coli JV20]
 gi|57019898|gb|EAL56578.1| HsdM [Campylobacter coli RM2228]
 gi|304444693|gb|EFM37343.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter coli JV20]
          Length = 495

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 197/544 (36%), Gaps = 80/544 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           + N I K  + L  D   +        I     L+ L+   E  +    E  L       
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYSEQISWILFLKFLDDYEEELK---LEAILNDKAYKS 57

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGS-------TNTRNNLESYIASFSDNAKAIFEDFD- 119
            LE       ++   TSE  L    +       +   N L +Y+ SF DN    F+  + 
Sbjct: 58  ILEEKFSWRIWAAPKTSEGKLDVKNALSGDDLLSFVNNELFAYLKSFKDN--ENFKSIEY 115

Query: 120 -----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F     R+     L ++      +    ++     +  +YE L++  GS+     
Sbjct: 116 KIGGIFEFIDNRIANGHTLREVINLVDELSFSKES-DVFALGEVYEKLLKDMGSDGGNS- 173

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGS 232
            +F TPR ++     ++           P     +YDP CG+ GFL ++  H+   D   
Sbjct: 174 GEFYTPRPLIRAMVEVI----------DPKAKERIYDPACGSCGFLVESFLHILYEDRNK 223

Query: 233 HHKIP---------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           + K                 G+E  P ++A+ V  M++  ++S      +   +      
Sbjct: 224 NKKANLSVEELEFLQNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTLNK----KI 279

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D+   +++   L+NPPFG K        EKE              K +   +LFL H+ 
Sbjct: 280 TDITQSEKYEVILANPPFGGK--------EKEQIQNNFP------VKSNATELLFLQHIL 325

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTN 402
             L    N  GR AI++    LF  +  +    +++ LLEN  +E +++LP+ +F   + 
Sbjct: 326 KSL----NNNGRCAIIVPEGVLF--QNSNAFVSVKKDLLENFNLECVLSLPSGVFLPYSA 379

Query: 403 IATYLWILSNRKTE--ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR 459
           + T +   S  K        KV        +  I   +  K + +      + L IY  R
Sbjct: 380 VKTNVLFFSKGKRSICGEDDKVY------YYELIPPFKLTKNKPLEYAHFEEFLKIYKER 433

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +    S ++  +    R   +    +     ++  L  +E  ++  K +    +  L  +
Sbjct: 434 KITPHSYLVSIKELEERNYDIS--AKNPNSKEEKTLREVEEILSTLKANQEKANELLQKI 491

Query: 520 KPMM 523
           + ++
Sbjct: 492 QNII 495


>gi|78773878|gb|ABB51226.1| type I RM system M subunit [Arthrospira platensis]
          Length = 504

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 158/466 (33%), Gaps = 79/466 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L+  LE  RS   E         +D     +   +S++   +     +   +  
Sbjct: 32  LLFLKYLDD-LEQERSMEAELMGKSYEFILD-----ETYRWSYWAVPKLPDGQIDRNSAL 85

Query: 96  --------TRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                     + L +Y+  F      SD  +    +  F     + +    L    +   
Sbjct: 86  IGDDLINYVNDVLFTYLKGFKQRATSSDTIEYKIGEI-FGEIKNKFQSGYSLRDALERID 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +           +S++YE  I+  G+       ++ TPR ++     ++          
Sbjct: 145 ELRFQTQDEK-HELSHLYETKIKNMGN-AGRNGGEYYTPRPLIRAMIRVV---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAG 258
            P +   +YD  CG+ GFL ++ +++       +    L      G+E +   + + +  
Sbjct: 193 KPKIGDRIYDGACGSAGFLCESYDYLRQDNLTTQQLRQLQTQTLFGKEKKSLAYVIAIMN 252

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++  +++      +   +       D+    RF   L+NPPFG K  K+          
Sbjct: 253 MILHGIDAPNIIHTNTLTEN----LSDIQDKDRFDVILANPPFGGKERKEVQQN------ 302

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K  + + LFL H    L++    GGRAAIV+ ++ L N    +    +R
Sbjct: 303 --------FPIKTGETAFLFLQHFIKILKV----GGRAAIVIKNTFLSNADNAA--RALR 348

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-RGKVQL------------- 424
           + LL +  + +I+  P   F    + T +         +  +G                 
Sbjct: 349 QELLSSCNLHSILDCPGGTFIGAGVKTVVLFFDKSNPTDAVQGMPLFSQGKSPTEELATR 408

Query: 425 -INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            I    L         K   +NDD  R+ +++  +      S  +D
Sbjct: 409 KIWYYQL--DPGRNMGKTNPLNDDDLREFVELQATFAESDKSWSVD 452


>gi|167768049|ref|ZP_02440102.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1]
 gi|167710378|gb|EDS20957.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1]
 gi|291561046|emb|CBL39846.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 488

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 164/434 (37%), Gaps = 69/434 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96
              +++L+     TR       L            +  A    Y  S++    LG  N  
Sbjct: 35  LLFIKQLDEV--ETRKERDANILGIPYEG------IFPADCQQYRWSKF--KNLGDANEI 84

Query: 97  ----RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                N +  +I S   + ++ +  +     I ++    LL K+     G+ L  D+   
Sbjct: 85  YDLMMNGVFPFIKSLHPDGESAYSKY-MGDAIFKIPTPALLTKVIDGIDGLNLEGDSK-- 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +  S        F TPR ++ +   L+           P     + DP
Sbjct: 142 ---GDLYEYLLSKLESAG--KNGQFRTPRHIIQMMVELV----------KPVPSDIICDP 186

Query: 213 TCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             G+ GFL  A  ++              +     + +G +++     +    ML+  ++
Sbjct: 187 AMGSAGFLMAAQQYLRKNHKDLFLNAEQREHFNHEMFYGFDMDRTMLRIGAMNMLLHGVD 246

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    NI+   +LS+     +++   L+NPPF  K   D D V  +          
Sbjct: 247 D-------PNIEYKDSLSEMNTDKEKYSLILANPPF--KGSLDYDGVSADLLK------- 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LFL+     +++    GGRAA+++    LF   +      IR+ L+EN 
Sbjct: 291 --VAKTKKTELLFLVLFLRIMKI----GGRAAVIVPDGVLF--GSSRAHKAIRKELIENH 342

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++A++++P+ +F     ++T + + +        G    +   D+    R    KR+ I
Sbjct: 343 KLDAVISMPSGVFKPYAGVSTAILLFTKTGA----GGTDKVWFYDMKADGRTLDDKRQEI 398

Query: 445 NDDQRRQILDIYVS 458
            ++    I++ Y +
Sbjct: 399 EENDIPDIIERYQN 412


>gi|159897811|ref|YP_001544058.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890850|gb|ABX03930.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 481

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 166/455 (36%), Gaps = 69/455 (15%)

Query: 38  FTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +        ++P   +   + LA+    I+ E        +F N   +  L  
Sbjct: 33  LLFLKIFDDREQELALIDPHYRSPMPEGLAWHQWAINREGITGEELLNFVNNQLFPQLKN 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L +TN    +   +               F      ++   LL ++    + I+ +  + 
Sbjct: 93  LAATNQAKAMIQSV---------------FEDAYNYMKNGTLLRQVINKINEIDFNR-SA 136

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              + +++YE L+    +  +  A ++ TPR V      +L           P +  +L 
Sbjct: 137 DRHLFNDVYEKLLSDLQAAGN--AGEYYTPRTVTQFMIEML----------KPRLGESLL 184

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESD 267
           DP  GTGGFL  A+ ++     H       +     G E +P  H + +  +++  +   
Sbjct: 185 DPAAGTGGFLVSAVEYIRRNDVHTPSDLETLQANIRGIEKKPLPHLLGITNLILHGINLP 244

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +  +   +  S+   D     +     +NPPFG +   ++D +E            P 
Sbjct: 245 NLQHANTLARSYSSYGVD----DQVDIIATNPPFGGQ---EEDGIENNF---------PE 288

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L +  + + LFL+ +   L+      GRAA++L    LF       ++ I+  LL+N  +
Sbjct: 289 LFRTRETADLFLVLIMRLLKP----NGRAALILPDGTLF---GEGIKTRIKEELLKNCNL 341

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIN 445
             IV LP  +F   T I T L      +        Q I   +  + +      K + I 
Sbjct: 342 HTIVRLPNGVFNPYTGIKTNLLFFEKGQP------TQEIWYYEHPYPAGYKSYSKTKPIR 395

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
            ++       +++R+  +F+  +D          +
Sbjct: 396 LEEFEPERAWWINRQTNQFAWKVDIADIRANNFNL 430


>gi|317177250|dbj|BAJ55039.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 543

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/538 (14%), Positives = 175/538 (32%), Gaps = 62/538 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFITLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDETTIALFESVSQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SK+     +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKECKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSNKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +E+ 
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSIIFFKKTPSEDG 428

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
              V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 429 ---VVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCALVSFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWR-------KLSPLHQSFWLDILKPMMQQIYP 528
             +      +       +++ E +   +        L    QS   +IL+ +    Y 
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILETLGNLNYD 543


>gi|319946655|ref|ZP_08020889.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus australis ATCC 700641]
 gi|319746703|gb|EFV98962.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus australis ATCC 700641]
          Length = 457

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 182/463 (39%), Gaps = 63/463 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNID------------- 68
           +  ++  +   F   + L          + E       LA    + D             
Sbjct: 28  EAGEYKLLTQSFL-YKFLNDKFLYQAKVLDESNTYENLLAMSEEDYDWLLEDIGTSTAWL 86

Query: 69  -LESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +  ++         +FY T E +L+ +      NN    + +  D A  +F++   + 
Sbjct: 87  KPDQLIETLHRQQNETTFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLITD 143

Query: 123 TIARLEK-AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI+   K   +   I    + I+             S ++E++I+ +  +      ++ T
Sbjct: 144 TISDSSKRNEVAKSIINLLTRIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYT 203

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  D             +YDP+ G+G  L +  + +            
Sbjct: 204 PHSVAKIIADILVGDDKPQNV-------RIYDPSAGSGTLLMNLASRIG--------VDK 248

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              + Q++  ++  +         L  +  +    NI QG+T++ +    ++  Y +SNP
Sbjct: 249 TTVYSQDISQKSSNLLRL-----NLILNGLQHSIHNIVQGNTITANRHP-EKMDYIVSNP 302

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRA 356
           PF   + + +D VE   +  E  RF  G+PK    S   M         +       G+A
Sbjct: 303 PFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPDGQA 360

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL +  +        +  IR+ L++N ++  +V++P+++F  T     +  +  +   
Sbjct: 361 AVVLPTGFITAQS--GIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK--- 415

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +
Sbjct: 416 -NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKK 457


>gi|163756220|ref|ZP_02163335.1| type I restriction-modification system, M subunit [Kordia algicida
           OT-1]
 gi|161323832|gb|EDP95166.1| type I restriction-modification system, M subunit [Kordia algicida
           OT-1]
          Length = 476

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 162/478 (33%), Gaps = 61/478 (12%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
           ++ + E  + +  Y              + +     +  +    +      ++ D     
Sbjct: 41  ADKEEEWEITIDNYESPIPEHLKWQNWAADDEGLTGDPLMEFIENELFPTLKELDITISP 100

Query: 120 --------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                   F  T   ++   L  ++    + I+ +  T    + ++IYE +++   S   
Sbjct: 101 QAKIIRSVFEDTYNYMKNGTLFRQVINVINEIDFN-STTERHLFNDIYETILKDLQSAG- 158

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             + ++ TPR V      ++          +P +  ++ DP CGTGGFLT  ++ V +  
Sbjct: 159 -SSGEYYTPRAVTQFMVDMV----------NPQLGESVLDPACGTGGFLTCTIDAVRNQV 207

Query: 232 SHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              K   +L     G E +P  H +C   +++   +    R  +   +       D    
Sbjct: 208 KTPKDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDLPVVRRDNLLSK----PYADWGAK 263

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    LSNPPFG     ++D  E            P   +  + + LFL  +   L+  
Sbjct: 264 DKLDIILSNPPFGG---VEEDGTETNF---------PKKFRTKETADLFLALIIKLLK-- 309

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
               GR AIVL    LF       ++ ++  LL    +  IV LP  +F   T I T L 
Sbjct: 310 --DKGRCAIVLPDGTLF---GEGMKTRLKEELLHKCNLHTIVRLPNGVFNPYTGIKTNLL 364

Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                         + +   +  +        K + IN  +       +  R   KF+  
Sbjct: 365 FFEKGTP------TKEVWYYEHQYPKGAKSYNKTKPINIKEFEVEKKWWHQRVENKFAWK 418

Query: 468 LDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +       R     +  P + +  L+   +   +   T  K+S +       + + + 
Sbjct: 419 VSIDEIKKRNYNLDIKNPHQEADTLESPEILLEKFRTTETKISSIQDEIINVLTEALK 476


>gi|149199124|ref|ZP_01876163.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Lentisphaera araneosa
           HTCC2155]
 gi|149137721|gb|EDM26135.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Lentisphaera araneosa
           HTCC2155]
          Length = 494

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/500 (16%), Positives = 182/500 (36%), Gaps = 65/500 (13%)

Query: 38  FTLLRRLECALEPTRSAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              ++ L+  L+ T+ A               D +  ++ + +      +         +
Sbjct: 35  LLFIKGLDE-LQSTKEATASMLDLPVDAPVYSDDQRELRWSAFKELEAQQMFSLFTRVDD 93

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           +   +  +I +   +  + F  +  +  + +++   +L ++ +    I +          
Sbjct: 94  SNPGIFQFIKNLHGDNDSAFSRY-MTDALFQVQSPKMLQRVVEMLDEIPM----QDRDTK 148

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE+L+ +  +        F TPR ++ L   L+           P    T+ DP  G
Sbjct: 149 GDIYEYLLSKIATSG--TLGQFRTPRHIIDLMVDLM----------RPTPQDTIIDPASG 196

Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  A N++ +           +      + +G +++     +    M++  +E   
Sbjct: 197 SCGFLVSANNYLRNNHKEIFTDGALNHHFNNEMFYGHDMDSTMLRIGAMNMMLHGVE--- 253

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + NI +  +L ++      +   L+NPPF       K A++ E  +  L      +
Sbjct: 254 ----NPNIDRRDSLGEENKDENSYSLILANPPF-------KGALDFEACSKSL----LAM 298

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL  +   L+L    GGR A+++    LF   +     +IR  L+E   +E
Sbjct: 299 CKTKKTELLFLALMIRSLKL----GGRCAVIVPDGVLF--GSSKAHKQIREQLVEKQNLE 352

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            ++++P+ +F     ++T + + +    E    KV   +  +   S+ +   KR  I   
Sbjct: 353 GVISMPSGVFKPYAGVSTAILLFTKTD-EGGTDKVWFYDMKNDGFSLDD---KRAPIEGS 408

Query: 448 QRRQILDIYVSRENGK--FSR-----MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
               I+  +  R NG+   SR      +           +        + ++      E 
Sbjct: 409 DLPDIIKSFHERNNGQDGQSRTAQSFFVPKEEIIENGYDLSINRYKEIVYEEVQYD--EP 466

Query: 501 DITWRKLSPLHQSFWLDILK 520
           +I   ++  L +     + +
Sbjct: 467 EIILDRIDSLEKDIVAGVSE 486


>gi|197104449|ref|YP_002129826.1| type I restriction-modification system, M subunit [Phenylobacterium
           zucineum HLK1]
 gi|196477869|gb|ACG77397.1| type I restriction-modification system, M subunit [Phenylobacterium
           zucineum HLK1]
          Length = 485

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 92/460 (20%), Positives = 156/460 (33%), Gaps = 72/460 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + D E  +   GY      E+      +       ++ ++  ++      ++       
Sbjct: 40  DDQDQELELVQPGYESPVPDEFQWRNWAADREGMTGDALLSFINNELFPALKNLPITGPR 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++    L K+      ++ + D    +   +IYE L+    S 
Sbjct: 100 RHRAIVVRSVFEDAYNYMKSGHQLRKVVNKIDDVDFN-DLSERQHFGDIYEQLLNDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V    T  +           P     L+DP CGTGGFLT AM H+ +
Sbjct: 159 GN--AGEYYTPRAVTAFMTDRI----------DPKPGEILFDPACGTGGFLTCAMRHMRE 206

Query: 230 CGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285
                     L        E +P  H + V  ML+  +E          ++  +TL++  
Sbjct: 207 RYVKRPEDEALMQASLRAVEKKPLPHMLAVTNMLLHGVED------PSFLRHDNTLARPY 260

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  R    L+NPPFG +   ++D +E            P   +  + + LFL  + 
Sbjct: 261 ISWGQSDRVDIVLTNPPFGGQ---EEDGIETNF---------PAHFRTRETADLFLALIV 308

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             L+     GGRAA+VL    LF       ++ ++  L+E   +  IV LP  +F    +
Sbjct: 309 RLLK----PGGRAAVVLPDGTLF---GEGMKTRLKEHLMEECNLHTIVRLPNSVFKPYAS 361

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR-RQILDIYVSREN 461
           I T L      +  E             W     EG+K   +    R     D       
Sbjct: 362 IGTNLLFFEKGQPTEETW---------YWEHRVPEGQKAYSMTKPIRLEHFADCVAWW-- 410

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           G  +R          R+        ++ LD      +E D
Sbjct: 411 GGTAREARQEGPQAWRVTAEAVKARNYNLDIKNPHTVEED 450


>gi|118578795|ref|YP_900045.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
 gi|118501505|gb|ABK97987.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
          Length = 488

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 141/374 (37%), Gaps = 57/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  + V GY     S +  S+          E  I   +++     +        
Sbjct: 40  DDKEQEWQLTVPGYKSPLPSRFRWSSWAKNPEGMTGEELIDFVNNDLFPALKKLATAAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE ++    S 
Sbjct: 100 SPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDRHLFNDIYEKILSDLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P + +T+ DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTRFMVDML----------DPQLGQTILDPACGTGGFLTCAIEHLNH 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---K 284
                     L     G E +P  H + +  M++  +      D+  N++  +TLS   K
Sbjct: 208 QVKTAADRTRLQECIFGVEKKPLPHMLAMTNMMLHGI------DVPTNVRHDNTLSRPLK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +E            P   +  + + LF+  + +
Sbjct: 262 DYGPKDRVDLIITNPPFGG---MEEDGIENNF---------PRKYQTRETADLFMALIMH 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+   +  G+AA+VL    LF       ++ ++R LLE   +  IV LP  +F   T+I
Sbjct: 310 LLK---HDTGKAAVVLPDGFLFGEGT---KTNLKRELLEEFNLHTIVRLPKGVFSPYTSI 363

Query: 404 ATYLWILSNRKTEE 417
           AT +          
Sbjct: 364 ATNILFFEKGGPTR 377


>gi|317012278|gb|ADU82886.1| type I restriction enzyme M protein [Helicobacter pylori
           Lithuania75]
          Length = 543

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 77/514 (14%), Positives = 169/514 (32%), Gaps = 57/514 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAF----GGSNIDL 69
              ++  +I    L + L    E               +    E+   F        +  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIRDYKDLNEEEKEDFFLTLNDKRLPK 90

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNAKAIFEDF--DFS 121
            ++ ++  Y F      +   L      N + S  A             A+FE      +
Sbjct: 91  LAYDELLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTTSTDKTTIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               R     +L    K F+     + L      D   + I+E+L++ + +       ++
Sbjct: 151 EESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYD-FFAPIFEYLLKDYNNAGGGKYAEY 209

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +  +   LL++         P     +YDP+ GTG  L    + +          
Sbjct: 210 YTPLSIASIIAKLLINE--------PTKSVKIYDPSAGTGTLLMALAHQIG--------T 253

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                + Q++  ++  +    +++  L    +  +  N       SKD     +  Y +S
Sbjct: 254 DSCTLYAQDISQKSLRMLKLNLILNDLTHSLKNAIEGNTLINPYHSKDYHG--KMDYIVS 311

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF   +  +   + + + +  LG   P +PK     M              +  G+ A
Sbjct: 312 NPPFKLDFSNEHAEISQNNNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDKGKGA 369

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I++ +  +        E++I R L++  L+  +V +P+ +F  T     +       +  
Sbjct: 370 IIVPTGFISAKS--GIENKIIRHLVDERLVYGVVCMPSQVFANTGTNVSIIFFQKTPSA- 426

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR 476
              +V LI+A+ L         K+  +       IL+ + ++     F  ++ +     +
Sbjct: 427 --NEVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTPKADFCALVSFDEITEK 484

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
              +              +++ E +   ++ S  
Sbjct: 485 NYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSE 518


>gi|332663456|ref|YP_004446244.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332270|gb|AEE49371.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 487

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/507 (16%), Positives = 181/507 (35%), Gaps = 74/507 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT------SEYSLSTL 91
              +RRL+     T+   +   L     +           +S +         +      
Sbjct: 35  LLFIRRLDEL--QTQREQKANLLKRPIEDPIYHENEYALRWSHFKNTDPEVMYKRFTQAD 92

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
           G  +   N+ S  A+FS                  +    LL ++ +  S I++      
Sbjct: 93  GVFDFLRNVGSRSAAFSK---------YMKGATFMIPTPRLLAQVVEMLSNIDMS----D 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                ++YE+L+ +  S        F TPR ++ L   ++           P +   + D
Sbjct: 140 RDTKGDVYEYLLSKIASAG--QNGQFRTPRHIIRLMVDMV----------QPTLEDFICD 187

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRL 264
           P+ GT GFLT A  ++ +  ++         H       G E +P    +    +++  +
Sbjct: 188 PSAGTCGFLTGAGEYIREHYANELYADGAQEHFQNHMFMGMEFDPTMIRIGAMNLILHGI 247

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E+   RD+    +  +  +      +R    L+NPPF       K ++++E  +G++ + 
Sbjct: 248 ENPQLRDVDALSEANTDFT------ERATLVLANPPF-------KGSLDREAVDGKILQ- 293

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                      +LFL  +   L+L    GGRAA+++    LF   +     +IR  L+E 
Sbjct: 294 ---TVDSKKTELLFLALILKGLKL----GGRAAVIVPDGVLF--GSSKAHQQIRTELIER 344

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             ++A++++P+ +F     ++T + + +        G    +   D+     +   KR  
Sbjct: 345 QRLQAVISMPSGVFKPYAGVSTAILLFTK----TNSGGTDQVWFYDMQADGFSLDDKRNP 400

Query: 444 INDDQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           +       I+  +        R+  + S ++  +     +  +           +   A 
Sbjct: 401 LPHSDLPDIVQRFQHLEAETQRQRTERSFLVPLQEIRDNKYDLSINRYKEVQYAEKTYAA 460

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQ 524
             A I   +     ++  L+ LK M+ 
Sbjct: 461 PGAIIAEIEALDRERTVLLNELKGMLA 487


>gi|330941027|gb|EGH43949.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 494

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 145/463 (31%), Gaps = 74/463 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +          RE        N            ++    E            
Sbjct: 33  LLFLKIFDD---------RELEWELMDDNYKSPIPDSCRWRTWAADPEGMTGDALKDFID 83

Query: 98  NNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           NNL   + +  +      A      F      ++   LL ++                  
Sbjct: 84  NNLFPQLQNLHEYSTTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNKAQERHE 143

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             N+YE L+R      +  A +F TPR V      ++           P +   L DP C
Sbjct: 144 FGNLYEQLLRDLQEAGN--AGEFYTPRPVTEFMVRMV----------DPKLDEKLMDPAC 191

Query: 215 GTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFLT  + H        +  +        G E +P  H +    M++  +E      
Sbjct: 192 GTGGFLTCTIEHKRSRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLSK        +R H  ++NPPFG     ++D +E            P  
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNF---------PAA 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL+ +   L+      GRAA+VL    +F     S    I+  LL    + 
Sbjct: 294 FRTRETADLFLVLIMQLLK----DNGRAAVVLPDGFMFGDGIKS---RIKEKLLTECNLH 346

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            IV LP  +F   T IAT L   +           Q +   +         K        
Sbjct: 347 TIVRLPKGVFNPYTPIATNLLFFTKGTP------TQQVWFYEH--QYPAGVKNYNKTRPL 398

Query: 448 QRRQI----------LDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +  +            D + +R   +F+  +       R   +
Sbjct: 399 RIEEFAVEEAWWGSEADGFAARVENEFAWKVSIDELQARNWNL 441


>gi|297379660|gb|ADI34547.1| type I restriction enzyme M protein [Helicobacter pylori v225d]
          Length = 543

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/513 (14%), Positives = 165/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +    + +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKNFNEEEKEDFFIILIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L+      S N   +F       T   L         
Sbjct: 91  LAHDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPSSIARIIAKLLVNE--------PTKSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SK+     +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKECKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              N   + AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLNDKCKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +   
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSIIFFKKMPSV-- 426

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  +  +     + 
Sbjct: 427 -NEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCALASFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFEDLMQQYSSE 518


>gi|281177459|dbj|BAI53789.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 545

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 80/513 (15%), Positives = 179/513 (34%), Gaps = 61/513 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECAL-----------------EPTRSAVREKYLAFGGSNIDL 69
              +F  +I    L + L                     E   SA+ E  L      +  
Sbjct: 29  DGNEFK-IITQAFLYKFLNDKFAFEAKQKDKSIASAESWEDALSAMSEDQLKKLQQRMAP 87

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED----FDFSSTIA 125
           ++      +          +   +    + L    A+ +D      +       F     
Sbjct: 88  DTARLKPHHFIRYLYNRQNAADFARTFDDTLMDIAATNNDVFAVKTDGGAKVVLFERLSQ 147

Query: 126 RLEKAGLLYKICKNFSG--IELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            +         C+       +   + +        + I+E+LI+ + S       ++ TP
Sbjct: 148 YIADESKRDDFCRAIINKLADFSFERIFTQKFDFYATIFEYLIKDYNSNSGGKYAEYYTP 207

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +   +L+       ++      + YDP+ G+G  L +  + + +         I 
Sbjct: 208 HAVARIMAEILVP----KAQQGVVRNVSCYDPSAGSGTLLMNVAHAIGEDRCSIFAQDIS 263

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
               Q+         +   L+  + +  + +   +        KD    KRF Y +SNPP
Sbjct: 264 ----QKSSSLLRLNLILNNLVHSIPNVIQGNTILHPFH-----KDGGALKRFDYIVSNPP 314

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGG 353
           F   +   +DA++         RF  G+PKI   +        LFL H+   L+     G
Sbjct: 315 FKMDFSDFRDALD---SKENQQRFFAGIPKIKAKARDKMEIYQLFLQHIIFSLK----PG 367

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+V+ +  +        +  IR  L++N ++  +V++P+++F  T     +  +   
Sbjct: 368 GKAAVVVPTGFITAQS--GIDKGIREHLVQNKMLAGVVSMPSNIFATTGTNVSILFID-- 423

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRT 472
                + KV LI+A++L   +++   ++ ++ + + ++I + + +      FS ++ Y  
Sbjct: 424 --ASNKEKVVLIDASNLGEKVKDGKNQKTVLTECEEKRICEAFNNKWSEEDFSVVVSYDD 481

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              +             ++ T +   +     +
Sbjct: 482 IAAKNYSFSAGQYFDVKIEYTDMTPEQFAAKMK 514


>gi|320321658|gb|EFW77757.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 494

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 146/463 (31%), Gaps = 74/463 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +          RE        N            ++    E            
Sbjct: 33  LLFLKIFDD---------RELEWELMDDNYKSPIPDSCRWRTWAADPEGMTGDALKDFID 83

Query: 98  NNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           NNL   + +  +      A      F      ++   LL ++                  
Sbjct: 84  NNLFPQLQNLHEYSTTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNKAQERHE 143

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             N+YE L+R      +  A +F TPR V     +++           P +   L DP C
Sbjct: 144 FGNLYEQLLRDLQEAGN--AGEFYTPRPVTEFMVSMV----------DPKLDEKLMDPAC 191

Query: 215 GTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFLT  + H        +  +        G E +P  H +    M++  +E      
Sbjct: 192 GTGGFLTCTIEHKRSRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIE------ 245

Query: 272 LSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   I+  +TLSK        +R H  ++NPPFG     ++D +E            P  
Sbjct: 246 VPSQIRHDNTLSKPLISWGPSERVHCIVANPPFGG---MEEDGIETNF---------PAA 293

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL+ +   L+      GRAA+VL    +F     S    I+  LL    + 
Sbjct: 294 FRTRETADLFLVLIMQLLK----DNGRAAVVLPDGFMFGDGIKS---RIKEKLLTECNLH 346

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            IV LP  +F   T IAT L   +           Q +   +         K        
Sbjct: 347 TIVRLPKGVFNPYTPIATNLLFFTKGTP------TQQVWFYEH--QYPAGVKNYNKTRPM 398

Query: 448 QRRQI----------LDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +  +            D + +R   +F+  +       R   +
Sbjct: 399 RIEEFAVEEAWWGSEADGFAARVENEFAWKVSIDELQARNWNL 441


>gi|284108605|ref|ZP_06386423.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829885|gb|EFC34174.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 271

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 120/309 (38%), Gaps = 53/309 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+ ++L G    + +   +L    ++ +         A+ E  +  GG  
Sbjct: 4   KKSQLYSSLWKSCDELRGGMDASQYKDYVLTLLFMKYVSDKHAGKPGALIE--VPVGGGF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            D+                      G     + +   IA  ++    K + +  DF+   
Sbjct: 62  ADMVKLK------------------GDKEIGDKINKIIARLAEANELKGVIDQADFNDEG 103

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 E    L K+   F  ++ H +    D ++ + YE+L+R F +E  +    F TP
Sbjct: 104 KLGSGKELQDRLSKLVAIFESLDFHANRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++    D    +      T+YDPTCG+G  L  A +         + P  +
Sbjct: 164 AEVSRIMAKVVGIGSDTRQDQ------TIYDPTCGSGSLLLKAAD---------EAPNGI 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYC 295
             +GQE++  T+++    M++           + ++  G+TL+   F       K F + 
Sbjct: 209 TVYGQEMDNATYSLARMNMILHN-------HPTADLWHGNTLAAPYFKNQNGSLKTFDFA 261

Query: 296 LSNPPFGKK 304
           ++NPPF  K
Sbjct: 262 VANPPFSAK 270


>gi|294676509|ref|YP_003577124.1| type I restriction-modification system RcaSBIP subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294475329|gb|ADE84717.1| type I restriction-modification system RcaSBIP, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 489

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 145/385 (37%), Gaps = 55/385 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+     L KA  L  +      ++ +     +  + ++YE L+ R  SE    A  + T
Sbjct: 100 FTDAKTSLTKATALTSLITTIDTVDWY--AAEEDGLGDLYEGLLERTTSERKSKAGQYFT 157

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR ++     L+           P +   + DP  GTGGFL  A   +          P 
Sbjct: 158 PRPLIETIIHLM----------KPKVGEVIQDPAAGTGGFLIAAHRAIMRDTDDLTTVPK 207

Query: 240 LVPHGQ--------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            V   Q        EL   TH +    +L+  ++                L+ D      
Sbjct: 208 DVAFAQRNGKYQGAELITGTHRLNTMNLLLHGIDQPIDPI--------DALTSDAKKFDP 259

Query: 292 FHYCLSNPPFGK---KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               L+NPPF K      +D   +  E + G L                F+ H+   L++
Sbjct: 260 ADLILTNPPFNKFPESVARDDFVITAEARKGPLP---------------FVEHVIRGLKV 304

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRAAIV+  + LF    G    ++R W+++   +  I+ LPT +F+   + T + 
Sbjct: 305 ----GGRAAIVVPDNTLFEDSMG---RDLRNWMMDLCDLHTILRLPTGIFYAQGVKTNVI 357

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            L+  K+EER G  + +   DL   + N G K R +        +  Y    +GK  R+ 
Sbjct: 358 FLTK-KSEERVGATKAVWFYDLRAQMPNFG-KTRTLTTADFEPFIAAYGDDPHGKSPRID 415

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKT 493
           +     +R+       + +  LD T
Sbjct: 416 EGEAGRFRKFTRDEISKRNDNLDVT 440


>gi|254491510|ref|ZP_05104689.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010]
 gi|224462988|gb|EEF79258.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 155/462 (33%), Gaps = 63/462 (13%)

Query: 38  FTLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
              L+ L+   +  +       E Y      +    S+      +       +L+ L   
Sbjct: 32  MLFLKYLDDLEQERKLEAELMGEDYRYIIDVDHRWSSWAAPKDANGSFDHNKALTGLDLI 91

Query: 95  N-TRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           +     L  Y+  F       D  +    +  F     +++    L    +    +    
Sbjct: 92  DYVDGELFPYLKGFKQRAESPDTIEYKIGEI-FGEIRNKIQSGYSLRDAIEKVDELRFR- 149

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             V    +S++YE  I+  G+   +   ++ TPR ++     +            P +  
Sbjct: 150 SQVEKHELSHLYETKIKNMGN-AGKNGGEYYTPRPLIRAMIDVT----------KPKIGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVAGM 259
           T+YD   G+ GFL +A +++   G   K               + +E +   + + +  M
Sbjct: 199 TIYDGAAGSAGFLCEAYDYLRQGGREKKQLSTNDLKTLQERTFYAKEKKSLAYVIAIMNM 258

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           ++  +E+      +   +      +D+    +    L+NPPFG K  K+           
Sbjct: 259 ILHGIETPNVMHTNTLAEN----LQDIQPSNQHDIILANPPFGGKERKEVQQN------- 307

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     K  + + LFL H    L+     GGRAAIV+ ++ L N    +    +R+
Sbjct: 308 -------FPIKTGETAFLFLQHFMKTLKP----GGRAAIVIKNTFLSNTDNAAI--ALRK 354

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LLEN  +  ++  P   F    + T +   +  +  ++    QL     L         
Sbjct: 355 ELLENHNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTQKVWNYQLDPGRSLG-------- 406

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           K   ++D    + + +    E+   S  ++          + 
Sbjct: 407 KTNPLHDKDLEEFVTLQKGFEDSDKSWSINVEDLDQTNWDLS 448


>gi|301059619|ref|ZP_07200528.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300446265|gb|EFK10121.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 601

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 156/417 (37%), Gaps = 76/417 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN-----------T 83
           I     +R+L  AL+  R A  ++ +   G +   ++  +   +S+              
Sbjct: 32  ITYLLFIRQL-KALDRARVAGEKESIYHKGPDDPEDADFEKCRWSYIRQNPSFQLLNDTV 90

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
             +  S      +  N ++ +   S        D  F   I  + KA  L +       +
Sbjct: 91  FPWLRSLEDRIGSGQNGDTTLGRIS----GRLSDAYF---ILDVNKAETLKRAVSLIDDL 143

Query: 144 --ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             +L   +V   +M +I+E+L+             F TPR V+     LL          
Sbjct: 144 FRQLDTRSVNSDIMGDIFEYLLEEVKESG--KNGQFRTPRHVIRFMVQLL---------- 191

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------------------- 239
            P + +T+ DP CG+GGFL +++ H     +   +  +                      
Sbjct: 192 EPELGKTILDPACGSGGFLLNSLLHWKAANTDEGVLRLEWDGAPHDTFPVWPQGKQYNFS 251

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLS 297
               G + +     +    +++  LE+         + Q  +LSK L   +   + Y L+
Sbjct: 252 SFFRGYDNDRTMVRIAWMNLILHDLEA-------PEVHQLDSLSKRLSDDESGAYDYILA 304

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPF    ++D  +   +       R G G     +   +LF+  + + L      GGRA
Sbjct: 305 NPPFTGNVDRDDLSENWQ----RFPRSGKGAVPLTTKSELLFVWLMLDLL----INGGRA 356

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           A+++    LF   +     E+RR LL  + +EA+V+LP ++F   + + T + +   
Sbjct: 357 AVIVPDGVLF--GSTKAHRELRRQLLFENTLEAVVSLPPNMFQPYSGVKTSILLFQK 411


>gi|227511525|ref|ZP_03941574.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085259|gb|EEI20571.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
          Length = 343

 Score =  179 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 106/276 (38%), Gaps = 41/276 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-------KYLAFGGSNI 67
           +W  A DL G+   ++F   IL     R L   ++   + + +       +         
Sbjct: 19  LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------------SFSDNAKAI 114
           DL + +K +   F        S +      N     +                 D+ K +
Sbjct: 79  DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           FED D +S+       E++ L+ K+  N + I+ H + +   V+ + YE+LI +F +   
Sbjct: 139 FEDMDLASSRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAATAG 198

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +  TP+ V  + + L+    + +        RT+YDPT G+G  L    ++     
Sbjct: 199 KKAGELYTPQQVSKVLSQLVTLNREEV--------RTVYDPTMGSGSLLLRVGDYAK--- 247

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
                  +   +GQEL   T+ +    ML+  +   
Sbjct: 248 -------VAEYYGQELNGTTYNLARMNMLMHGINYS 276


>gi|282883061|ref|ZP_06291662.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281297118|gb|EFA89613.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 280

 Score =  179 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 32/287 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             GQE+      +C   M +  +  +     + +I++G TL   L   ++ F   +SNPP
Sbjct: 14  FFGQEINMTNFNLCRMNMFLHNVNYN-----NFSIKRGDTLLAPLHNDEKPFDAIVSNPP 68

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           +  KW  D D            RF P   L   +     F++H  + L    +  GRAAI
Sbjct: 69  YSIKWVGDNDPTLINDI-----RFAPAGKLAPKNYADFAFILHALSYL----SSKGRAAI 119

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V      +   A   E  IR++L++N  ++A++ LP +LFF T+IAT + +++  KTE  
Sbjct: 120 VCFPGIFYRKGA---EKTIRKYLVDNSFVDAVIQLPENLFFGTSIATCVLVMAKNKTE-- 174

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             KV  I+A++ +  + N      I+ ++   +I+D +  R E   FSR +         
Sbjct: 175 -NKVLFIDASNEFKKVTN----NNILEEENINKIVDEFRDRKEIEYFSRYVSRDEIAEND 229

Query: 478 IK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
               V   +      +K  +  L  +I  T  K++ L  S    + +
Sbjct: 230 YNLSVSTYVEKEDTREKIDIKVLNKEIEETVEKINKLRASINQIVRE 276


>gi|109947644|ref|YP_664872.1| type I restriction enzyme M protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714865|emb|CAJ99873.1| type I restriction enzyme M protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 543

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/513 (14%), Positives = 168/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y        +             
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDVTEEEKEDFFLTLSDKKLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFD--------FSSTIARLE 128
            + +  L+ L   +  +N     L++   + S N  A+F            F S    + 
Sbjct: 91  LSYDELLNHLFDKHFNDNDLHIKLDAIFNNISSNNAALFNTISTDKTTIALFESISQHIN 150

Query: 129 KAGLLYKICK---------NFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +        K         NF    L+          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTKVLLDKLKNFNFKNAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P   + +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PVKSKKIYDPSAGTGTLLIALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SKD     +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKNAIEGNTLTNPYHSKDYKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   +     +  LG   P +PK     M              N   + AI
Sbjct: 313 PPFKLDFSNEHATISNNKSDFSLG--VPNIPKNDKSKMPIYTLFFQHCLSMLNPKSKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +      +   +I R L++  L+  ++ +P+ +F  T     +       +E  
Sbjct: 371 VVPTGFISAKSGVAN--KIVRHLVDEKLVYGVICMPSQVFANTGTNVSVIFFQKTPSE-- 426

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 427 -NEVILIDASKLGEEYTENKNKKTRLRTSDMDLILETFKNKTQKSDFCAVVSFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDVSETISQTEFENLMQQYSSE 518


>gi|145221399|ref|YP_001132077.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145213885|gb|ABP43289.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 484

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 161/441 (36%), Gaps = 62/441 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     +RRL+           E+  A  G+  +L        + +        + + +T
Sbjct: 32  ITYLLFIRRLDDL------ETLEERKARLGAAGELRFGSDQQEFRWSRFKNEEPAVMFAT 85

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                +  ++ +   +     E          +  A LL ++      I ++        
Sbjct: 86  -VGEKVFPFLRTLGGDGSTYGEH--MKDARFTIPTAQLLSRVVDLLDEIPMN----DRDT 138

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  S        F TPR ++ L   +           +P     + DP  
Sbjct: 139 NGDLYEYLLSKIASAGVN--GQFRTPRHIIKLMVDMT----------APTPADEICDPAA 186

Query: 215 GTGGFLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  A  ++ +        G+  K     + HG + +     +    ML+  +ES 
Sbjct: 187 GTAGFLVAASEYIREQHPSVLTDGAKRKHFHASMFHGYDFDNTMLRIASMNMLMHGIES- 245

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+   +LS+      +++   L+NPPF          ++ E  + +L R   
Sbjct: 246 ------PDIRYRDSLSEGASDDAEKYTLILANPPFAGS-------LDYESTSKDLQR--- 289

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L+     GGRAA+++    LF   +     ++RR L+E+  
Sbjct: 290 -VVKTKKTELLFVALFLKLLKP----GGRAAVIVPDGVLF--GSSKAHKDLRRMLVEDQK 342

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++ IV LP+ +F     ++T + + +        G    +   D+     +   KR  + 
Sbjct: 343 LDGIVKLPSGVFRPYAGVSTAILLFTK----TNSGGTDQVWFYDVTADGFSLDDKRNPVE 398

Query: 446 DDQRRQILDIYVSRENGKFSR 466
            +    +L  + SR   +  R
Sbjct: 399 ANDLPDLLSRWGSRTGSELER 419


>gi|254447352|ref|ZP_05060818.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
 gi|198262695|gb|EDY86974.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
          Length = 498

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 170/493 (34%), Gaps = 75/493 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S++  I    + +  D          G+++     L+  +          REK       
Sbjct: 2   SISTLIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD---------REKEWELMNP 51

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDFSS 122
           +       ++   ++   SE            N L   +       ++ +AI     F  
Sbjct: 52  DYQSPIPQQLRWRNWAADSEGMTGEKLKDFVDNKLFKQLKELTPQGEDRRAIVIRNVFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++            T     +  +YE +++   S  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKMEEGINFNKTSERHELGTMYEQILKDLQSAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V       +           P +  T+ DP CGTGGFLT A+++           +    
Sbjct: 170 VTQFMVNRV----------DPKLEDTVMDPACGTGGFLTCAIDYKRKHYVETPEQEATLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCL 296
               G E +P  H +    +++  +E      +   I+  +T     +D    +R    +
Sbjct: 220 NTIAGVEKKPLPHLLATTNLILHGIE------VPDQIKHDNTLARPLRDWGPKERVDVIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG +   ++D +E            P   +  + + LF+    + L      GGRA
Sbjct: 274 ANPPFGGQ---EEDGIETNF---------PSAFRTRETADLFMTLFIHLLR----DGGRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+VL    LF       ++ ++  LLE   +  IV LP  +F   T I T L   +  K 
Sbjct: 318 AVVLPDGFLF---GEGMKTRLKEKLLEECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGKP 374

Query: 416 EERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQI------LDIYVSRENGKFSRM 467
            E       +   +       ++  K + +   + + +I       D + SRE  + +  
Sbjct: 375 TET------VWYYEHPYPEGYKSYSKTKPMKFSEFQTEIDWWGTEADGFASREETEQAWK 428

Query: 468 LDYRTFGYRRIKV 480
           +       R   +
Sbjct: 429 MSIDDIKARNYNL 441


>gi|317179168|dbj|BAJ56956.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 543

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/513 (14%), Positives = 167/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQKFPNQTIQDYKDFNEEEKEDFFLTLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
              +  LS L   +  +N     L+      S N   +F       T   L K+   Y  
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDKTTIALFKSVSQYIN 150

Query: 137 ------------CKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                              +         +       + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SK+     +  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKECKG--KMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +E+ 
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSIIFFKKTPSEDG 428

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
              V LINA+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 429 ---VVLINASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKAGFCALVSFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +      +       +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518


>gi|168183359|ref|ZP_02618023.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Bf]
 gi|237793995|ref|YP_002861547.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Ba4 str. 657]
 gi|182673480|gb|EDT85441.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Bf]
 gi|229263879|gb|ACQ54912.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Ba4 str. 657]
          Length = 485

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/501 (16%), Positives = 181/501 (36%), Gaps = 65/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  ++ L+       + +  +  A          F     Y  ++  +   +        
Sbjct: 35  FLFIKDLDD------NEILAESDAELLGIPFEGMFPSDRQYLRWSKFKNIEAGEMYRIVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I     + ++ +  +  S  + ++    +L KI      I ++          +
Sbjct: 89  QEVFPFIKDIHGDKQSAYSKY-MSDAMFKIPTPLMLSKIVDAIDNINMN----DKDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +     +     F TPR ++ +   L+           P     + DP  GT 
Sbjct: 144 LYEYLLSKIAQAGTN--GQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMGTA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++ +  S   +   L  H       G +++     +    M++  ++     
Sbjct: 192 GFLVGAEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF  K   D +AV  +            + K
Sbjct: 247 --NPNIEYKDSLSETNKDREKYTLVLANPPF--KGSLDYEAVSADILK---------VSK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D+  
Sbjct: 348 ISMPSGVFKPYAGVSTAIIIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNPIEDNDI 403

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ + +      R+  + S  +           +          ++      +  + 
Sbjct: 404 SDIIERFSNLDKEEDRKRTEQSFFVPVDEIRENNYDLSINKYKEIEYEEVHYDEPKVILE 463

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
             K      +  +D L+ M++
Sbjct: 464 RVKKLEKEITEGMDELEKMIE 484


>gi|307720724|ref|YP_003891864.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978817|gb|ADN08852.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
          Length = 495

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/493 (20%), Positives = 179/493 (36%), Gaps = 73/493 (14%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-T 94
             L+ L    +          ++Y      N    S+              + S      
Sbjct: 32  LFLKFLNDLEDSKADEALLNGQEYTYILDDNYKWSSWACPKDAKGKLDLINAKSGEDLLE 91

Query: 95  NTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                L  Y+  F        + K       F     R+     L ++      ++ H +
Sbjct: 92  FVNKELFPYLKGFKSLTQDPKSIKYKIGAI-FEYLDNRIANGHTLREVLDIIDELDFH-N 149

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +S IYE L++  GS+      +F TPR ++ +   ++          +P +  T
Sbjct: 150 QADLFQLSLIYEKLLKDMGSDGGNS-GEFYTPRPLIKVIADVV----------NPVIGET 198

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVA 257
           +YDP  G+ GFL +A NH+    +       L              G E  P ++ + V 
Sbjct: 199 VYDPAAGSCGFLIEAYNHIRYINAEENKQRELSTEQLKFLNEDTFFGNEKTPLSYVMGVM 258

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            M++  +ES        NI + +TL+KD   L   +RF   L+NPPFG K   + D++++
Sbjct: 259 NMILHGIES-------PNIAKTNTLTKDIRGLEEKERFDCILANPPFGGK---ENDSIQQ 308

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                          K +   +LFL H+ N L+L     G+  +V+    LF  +     
Sbjct: 309 NF-----------PIKSNATELLFLQHMMNYLKL----NGKCGVVIPEGVLF--QTNKAF 351

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LLE   +  I++LP  +F   + + T +         +R G    I   +   +
Sbjct: 352 QAVKQELLERFNVHTILSLPAGIFLPYSGVKTNVIFF------DRAGATSEIFYYE--VN 403

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
              +  K + I  +  ++ LD +  R   + S ++         I    P +   I  K+
Sbjct: 404 PPYKLTKNKPIKYEHFKEFLDTWQERTLTENSWVVHVNNIKDYDISAKNPNKNEVIEHKS 463

Query: 494 GLARLEADITWRK 506
            L  +E   T  K
Sbjct: 464 PLELVENIKTNNK 476


>gi|289208799|ref|YP_003460865.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix]
 gi|288944430|gb|ADC72129.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix]
          Length = 495

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/513 (17%), Positives = 173/513 (33%), Gaps = 76/513 (14%)

Query: 38  FTLLRRLECALEPTRSAVRE------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+ L+  LE  R+   E      +Y+          +  K A  +F +    + + L
Sbjct: 32  MLFLKYLDD-LEYERAQEAELVGKSYQYIIDEPYRWSAWAAPKKADGTFDHDEALTGADL 90

Query: 92  GSTNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                 ++L  Y+  F       D  +    +  FS    +      L    +   G+  
Sbjct: 91  -IGFVNDDLFPYLQGFRTRATGPDTLEYKIGEI-FSEIRNKFSSGYSLRDALELIDGLSF 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    +S++YE  IR  G+       ++ TPR ++     ++           P +
Sbjct: 149 R-SQKEKHELSHLYEAKIRNMGN-AGRNGGEYYTPRPLIRAMIQVV----------KPRI 196

Query: 206 IRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPI-----LVPHGQELEPE 250
              +YD   G+ GFL +A +++             GSH  I  +        + +E +  
Sbjct: 197 GERIYDAAAGSAGFLCEAHDYLRYGPDGQGDGKRDGSHLSISDLNTLQTRTFYAKEKKSL 256

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            + + +  +++  +E+      +   +       D+    RF   L+NPPFG K  K+  
Sbjct: 257 PYVIGIMNLILHGIEAPNVIHTNSLTEN----LSDIQEKDRFDVILANPPFGGKERKEVQ 312

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                              K  + + LFL H    L+     GGR A+V+ ++ L N   
Sbjct: 313 QN--------------FPIKTGETAFLFLQHFIKYLKA----GGRTAVVIKNTFLSNSDN 354

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            S    +R+ LL++  +  I+  P   F    + T +          +    QL     L
Sbjct: 355 AS--RALRKELLQSCNLHTILDCPGGTFLGAGVKTVVLFFDKGAPTRKLWYYQLDPGRSL 412

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
                    K   +NDD  +  +      ++   S  +D +      + +   ++     
Sbjct: 413 G--------KTNPLNDDDLKDFVARQAGFDDSDNSWTVDVQDIDPDSVDLS--VKNPNKA 462

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +   L   E  I   +         L+ ++ M+
Sbjct: 463 EAEPLRDPEVIINEIETLDRESEEILEGIRGML 495


>gi|149177180|ref|ZP_01855786.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Planctomyces maris DSM 8797]
 gi|148843894|gb|EDL58251.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Planctomyces maris DSM 8797]
          Length = 489

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 160/461 (34%), Gaps = 78/461 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA-GYSFYNTSEYSLSTLGS---- 93
             L+ L+  LE  R +V         S    E  ++    +  +         +      
Sbjct: 33  LFLKYLDD-LERERESV------ASLSGKAFEPILRPEYRWGIWAMPRKDDGEIDHHAAL 85

Query: 94  ------TNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                       L  Y+A F      +D  +    +  FS    RL+    L ++     
Sbjct: 86  TGDDLLDFVNQKLFPYLAKFKTSAESTDTIEYKIGEI-FSELKNRLQSGYNLREVINLVD 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +     +V    MS++YE  I+  G+       ++ TPR ++     ++          
Sbjct: 145 ELRF-QTSVEKHEMSHLYESKIQNMGN-AGRNGGEYYTPRPLIRAIVKVI---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---------HKIPPILVPHGQELEPETH 252
           +P +  T+YD   G+ GFL +A + ++D  +H          +I       G+E +    
Sbjct: 193 NPQIGETIYDAAVGSAGFLVEAFDFLSDESNHGGKKLSHKDARILQQKTFTGKEKKSLAF 252

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M++  +E+      +   +       D+    RF  CL+NPPFG K  K+    
Sbjct: 253 IIGTMNMILHGIEAPNLIHTNSLTEN----LADIQEKDRFDICLANPPFGGKERKEVQQN 308

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                            K  + + LFL H    L+     GGRA IV+ ++ L N    S
Sbjct: 309 --------------FPIKTGETAFLFLQHFIKLLKA----GGRAGIVIKNTFLSNSDNAS 350

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
               +R+ LLE+  +  I+ LP   F    + T +      K   +      I    L  
Sbjct: 351 --VSLRKQLLESCDLHTILDLPGGTFTGAGVKTVVLFFEKGKATRK------IWYYQL-- 400

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           +      K   +N+    + + +   ++    S  ++ +  
Sbjct: 401 NPGRNLGKTNPLNEADLAEFVKLQPKKKESDNSWTVNIKDI 441


>gi|194396843|ref|YP_002037523.1| type I restriction-modification system subunit M [Streptococcus
           pneumoniae G54]
 gi|194356510|gb|ACF54958.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae G54]
          Length = 497

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 164/491 (33%), Gaps = 70/491 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  E   ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGIPYEGVFPKDKPEXRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 214

Query: 228 ADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +     + H       G + +     +    M++  +E       +  I    
Sbjct: 215 KRKKDEWETNTDNINHFHNQMFRGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 267

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +LS+D     ++   L+NPPF    + +  + +                K     +LFL 
Sbjct: 268 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND-----------LLATVKTKKTELLFLS 316

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-F 399
                L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F  
Sbjct: 317 LFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKP 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
              ++T + I +        G    +   D+     +   KR+ I+D+    I++ +   
Sbjct: 371 YAGVSTAILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHL 426

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                R+    S  +           +          +K      E  +           
Sbjct: 427 EKEAERQRTDQSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQ 486

Query: 514 FWLDILKPMMQ 524
             L  L+ +++
Sbjct: 487 AGLAELEKLLK 497


>gi|242399586|ref|YP_002995011.1| Type I restriction-modification system methyltransferase subunit
           [Thermococcus sibiricus MM 739]
 gi|242265980|gb|ACS90662.1| Type I restriction-modification system methyltransferase subunit
           [Thermococcus sibiricus MM 739]
          Length = 498

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/486 (18%), Positives = 171/486 (35%), Gaps = 79/486 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---- 93
              L+ L    E  +       L            +K           + + +L      
Sbjct: 34  MLFLKILSDREEERK-------LEAEVKGEKYVPIIKEEYLFHNWPKRFGVDSLKKVKDV 86

Query: 94  ----TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                   N L  Y++S     +       FS+   ++     L +I +N   I  H D 
Sbjct: 87  KTFYDFITNELWPYLSSLGGTDELNKIGEIFSNVTVKVHDPHNLLEIFQNIEDI--HKDD 144

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               +MS +YE  +          A ++ TPR +V     ++           P + +T+
Sbjct: 145 EDTHIMSQLYEETL-MLMGREGGAAGEYYTPRPIVRFMVKVV----------DPRIGQTV 193

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESD 267
           +DP CG+GGFL +A NH+ +     +    L    +GQEL+ + + +     L+  + + 
Sbjct: 194 FDPFCGSGGFLVEAYNHMYEQAKTAEDLRKLDKAFYGQELKTQAYLIANMNTLLHNVNAK 253

Query: 268 PRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             +          T S+DL   G+ +   L+NPPFG K ++                   
Sbjct: 254 LVKT--------DTFSEDLHNPGELYDVILTNPPFGGKIKESNLQNL------------- 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +  L H+  K +     GG+  IVL    L N        ++R+ LLE + 
Sbjct: 293 -IVKTRSTELAALQHVMKKAK----PGGKVGIVLPDGVLSN--VTKAYVKVRKELLEKNN 345

Query: 387 IEAIVALPTDLFFR------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           + AIV+LP  +F        +   T L      K        + +   +L         +
Sbjct: 346 VFAIVSLPQGVFANISPKGGSGPKTSLLFFERGKP------TREVWYYELIPPNGKNYTR 399

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              I D+     L  + + +     + L+     +++  +      S+++    +  ++ 
Sbjct: 400 ANPIKDEDLSDALKKFEAWK-----KYLETDDEEWKKKALSEN---SWVVSVEEIKEMDY 451

Query: 501 DITWRK 506
           D++ R 
Sbjct: 452 DLSARN 457


>gi|237744713|ref|ZP_04575194.1| type I restriction modification system M subunit [Fusobacterium sp.
           7_1]
 gi|229431942|gb|EEO42154.1| type I restriction modification system M subunit [Fusobacterium sp.
           7_1]
          Length = 498

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 195/499 (39%), Gaps = 60/499 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+      +   +EK LA    NID +            ++   L         
Sbjct: 35  LIFMKRLDQE---EQRKEKEKKLASIFGNIDEKFIFDEKHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  D+ +++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  IRNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSG--KNGQFRTPKHIINMMVELM----------KPTVQDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++              +K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKRNFRDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  +++  +LS D      +   L+NPPF       K ++++   +  L R   
Sbjct: 258 ------TPKLKRIDSLSTDFNEENDYTLVLANPPF-------KGSIDESLLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLF--GASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +EA++++P+ +F     ++T + I +        G    +   D+     +   KR  I 
Sbjct: 355 LEAVISMPSGVFRPYAGVSTGILIFTK----TGNGGTDNVWFYDMTADGYSLDDKRNPIE 410

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEAD 501
           ++    I++ + + EN K  +  D   F  ++  V     +S      +    +   E +
Sbjct: 411 ENDIPDIIERFSNLENEKGRKRTDKSFFVPKQEIVDNDYDLSINKYKEIVYEKVEYEEPE 470

Query: 502 ITWRKLSPLHQSFWLDILK 520
           +  +KL  L +S    + +
Sbjct: 471 VILQKLEELSKSIDEKLKE 489


>gi|304311154|ref|YP_003810752.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301796887|emb|CBL45099.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 475

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 160/464 (34%), Gaps = 86/464 (18%)

Query: 38  FTLLRRLECALEP-------TRSAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEY 86
              L+      E         RS +  +      +  D     +  ++      +     
Sbjct: 34  MLFLKIFSDKDEELELLDDSYRSPIPAELRWVEWAGDDEGMTGDELLQFVDRKLFP---- 89

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                          S I   + N +A+     F++    ++    L ++    + I+ +
Sbjct: 90  -------------ALSNIDLSTGNRRAVLVHEVFANNYNYMKSGIHLRQVINKLNKIDFN 136

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +    +   IYE  +    S       +F TPR +    T ++          +P   
Sbjct: 137 -SSKDLHLFGQIYETFLSELQSAG--TLGEFYTPRAITQFMTEMV----------APKQG 183

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            T+ DP CGTGGF+T  + H+    S    +        G E +P  + +    +++  +
Sbjct: 184 ETVLDPACGTGGFITAVIEHLKASASSVAEREAIGHNVRGWEYKPLPYMLANTNLILHDI 243

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                  ++ +IQ G +L + L       R    ++NPPFG     + +           
Sbjct: 244 -------ITPSIQFGDSLQRPLSEYSRKDRVDVIIANPPFGGVVSNNNE----------- 285

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
               P   +  + + LFL+ + + ++     GGRAAIVL    L        +  IR+ L
Sbjct: 286 -NNFPQSYRTKESADLFLILMMHLMK----DGGRAAIVLPDGSL---TGDGVKQRIRQKL 337

Query: 382 LENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATD----LWTSIRN 436
           LE+  +  IV LP  +F    ++AT L   +  +  +       I   +          +
Sbjct: 338 LEDCNLHTIVRLPNSVFQPYASVATNLLFFTKGEPTKN------IWYYEHKLPEGYKAYS 391

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           + K  ++   D  +Q    +V RE    +  +D  +       +
Sbjct: 392 KTKPIQLAEFDTLKQ---WWVKREESDQAWQVDIDSIKVNGYNL 432


>gi|91217497|ref|ZP_01254456.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Psychroflexus torquis ATCC 700755]
 gi|91184382|gb|EAS70766.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Psychroflexus torquis ATCC 700755]
          Length = 485

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/503 (17%), Positives = 176/503 (34%), Gaps = 67/503 (13%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             LR L+   E  R    E  L     +  L    +   ++    +E  +    +     
Sbjct: 33  LFLRYLD---ELERDKADEAELKGEEYSFILAEEYRWPNWAMPKDAEGKIDHHVAMTGVD 89

Query: 94  --TNTRNNLESYIASFSDNA------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                   L  Y+A F   A      +    +  FS    +++    L +I +    +  
Sbjct: 90  LVQFVDGKLFPYLAKFKQEADNANTIEYKIGEI-FSELKNKIQSGYNLREILEYADELPF 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
              T     +S++YE  I+  G+        + TPR ++     ++           P +
Sbjct: 149 RGST-DKHELSHLYETKIKNMGN-AGRNGGQYYTPRPLIRAMIKVV----------DPQI 196

Query: 206 IRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +YD   G+ GFL +A +++         + K       +G+E +   + + +  M++
Sbjct: 197 GEKVYDAAAGSCGFLVEAYDYMYQRMDKTTDNLKTLQEDTLYGKEKKNLAYVIGIMNMIL 256

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +E+      +   +      +D+    R+H  L+NPPFG K   +             
Sbjct: 257 HGIEAPNIVHTNTLGEN----IRDIQEKNRYHVILANPPFGGKERAEVQQNFD------- 305

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                   K  + + LFL H    L++    GG+AAIV+ ++ L N    S    +R+ L
Sbjct: 306 -------IKTGETASLFLQHFIKSLKI----GGKAAIVIKNTFLSNADNASI--SLRKHL 352

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           LE+  +  I+ +P+  F    + T +      +  ++      I    L         K 
Sbjct: 353 LESCNLHTILDMPSGTFTGAGVKTVVLFFQKGEPTKK------IWYYQL--DAGRNMGKT 404

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             +ND+   + + IY  + N + S + +          +    +    L++  L   E  
Sbjct: 405 NPLNDEDMAEFITIYKEKSNTEKSWIFNVNDMDGTNFDLA--PKNPNKLEEEALRSPEVI 462

Query: 502 ITWRKLSPLHQSFWLDILKPMMQ 524
           +          S  L  +K ++ 
Sbjct: 463 LEEMHTLDEETSSILSNIKELIS 485


>gi|15611483|ref|NP_223134.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4154948|gb|AAD05994.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 543

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/492 (14%), Positives = 167/492 (33%), Gaps = 39/492 (7%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + +    +         +L      +   ++ ++  Y F      +   L      N + 
Sbjct: 63  KTIRDYKDFNEEEKEYFFLTLSDKKLPKLAYDELLNYLFEKHFYDNDLHLKLDAIFNRIS 122

Query: 102 SYIASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDT 149
           S  A         +   A+FE      +    R      L    KNF+     + L    
Sbjct: 123 SNNAELFNTKSTDETTIALFESVSQYINEGSKRANFTRSLLDKLKNFNFKQAFLNLQNQQ 182

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D   + I+E+L++ + +       ++ TP  +  +   LL++         P     +
Sbjct: 183 GYD-FFAPIFEYLLKDYNNNSGGTYAEYYTPLSIASIIAKLLVN--------KPTQSVKI 233

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ GTG  L    + +               + Q++  ++  +    +++  L    R
Sbjct: 234 YDPSAGTGTLLMALAHQIG--------TDSCTLYAQDISQKSLRMLKLNLILNDLTHSLR 285

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             +  N       SKD     +  + +SNPPF   +  +   + +   +  LG   P +P
Sbjct: 286 HAIEGNTLTNPYHSKDHKG--KMDFIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIP 341

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     M              +  G+ AI++ +  +        E++I R L++  L+  
Sbjct: 342 KNDKSKMPIYTLFFQHCLNMLSPKGKGAIIVPTGFISAKS--GVENKIVRHLVDERLVYG 399

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ +P+ +F  T     +       + +   +V LI+A+ L         K+  +     
Sbjct: 400 VICMPSQVFANTGTNVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRPSDM 456

Query: 450 RQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
             IL+ + ++     F  ++ +     +   +      +       +++ E +   ++ S
Sbjct: 457 DLILETFQNKAPKSDFCALVSFDEITEKNYSLNPGQYFTIEDTSETISQAEFENLMQQYS 516

Query: 509 PLHQSFWLDILK 520
               S + +   
Sbjct: 517 SELASLFDESQN 528


>gi|84499587|ref|ZP_00997875.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597]
 gi|84392731|gb|EAQ04942.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597]
          Length = 512

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 137/405 (33%), Gaps = 58/405 (14%)

Query: 35  ILPFTLLRRLEC--ALEPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           I     ++RL+    LE +++      +    F   N D     +   +S +   E    
Sbjct: 32  ITYLLFIKRLDDLHTLEESKAETLGLEMERRIFPEGNDDKGRAYEDMRWSRFKNFEAREM 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                    ++  ++    +   +  +               LL K+ +    I +    
Sbjct: 92  M---EVVDEHVFPFLRQLGEEGSSYGKH--MKDARLGFSSPSLLSKVVEMLDQIPMD--- 143

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  S        F TPR ++ L   L           +P     +
Sbjct: 144 -DRDTKGDLYEYMLGKIASAG--QNGQFRTPRHIIQLMVELT----------APTPDDVI 190

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIR 262
            DP  GT GFL  A  ++                    + HG + +P    +    M++ 
Sbjct: 191 CDPASGTCGFLVAAGEYLRANHPELFRNEKQRAHFHKDMFHGFDFDPTMLRIGAMNMVLH 250

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E           ++ +          ++   L+NPPF    + D  A + +       
Sbjct: 251 GVEDADISYRDSLAEEHNA------DAGKYSLILANPPFAGSLDYDSTAKDLQK------ 298

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                + K     +LF+      L+     GGRAA+V+    LF   A     EIRR L+
Sbjct: 299 -----IVKTKKTELLFVGLFLRLLKT----GGRAAVVVPDGVLF--GASKAHKEIRRMLV 347

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
           E+  ++A++ LP+ +F     ++T + + +          V   +
Sbjct: 348 EDHKLDAVIKLPSGVFRPYAGVSTAILVFTKT-GVGGTDHVWFYD 391


>gi|21229249|ref|NP_635171.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907823|gb|AAM32843.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 504

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 165/453 (36%), Gaps = 83/453 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RLE      +        A+        S  +      ++  ++  +     + R
Sbjct: 36  LIFMKRLEDMDVLEQRRANATGKAYI-------SIFEGHEECRWSEWKHKSAEEMLKHVR 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           + +  +I +  D  K +F        +  + K  L+ +       +++   T    V  +
Sbjct: 89  DVVFPFIKNIHDGEKTLFSQ-HMKDAVFIIPKPSLVQEAVGIIDELDISGQT--SDVQGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+L+ +  +        F TPR ++ +   L+           P +   + DP CGT 
Sbjct: 146 IYEYLLSQLATAG--KNGQFRTPRHIIRMIVELV----------DPDVNDRICDPACGTA 193

Query: 218 GFLTDAM--------------------------NHVADCGSHHKIPPILVPHGQELEPET 251
           GFL  A                           +H+ +  +  K+      +G + +   
Sbjct: 194 GFLFTAYRYILKKYTSPDMVTEDEEGDWHGLIGDHITEQNAWDKLHQD-TFYGFDFDSTM 252

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             + +  M++  +++        +I+   TLS      + F   L+NPPF       K +
Sbjct: 253 VRIALMNMVLHGIKA-------PHIESTDTLSNQYSGEEAFTVILANPPF-------KGS 298

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++K   N  L          +   +LF+  +   LE+    GG+  +++    LF   + 
Sbjct: 299 IDKNDINDRL------TLGTTKTELLFVEKMYRMLEI----GGKCGVIVPDGVLF--GSS 346

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +   ++R+ LLE   +E IV++P+ +F     ++T + I +N       G  + +   D+
Sbjct: 347 NAHRDLRKLLLEKCQLEGIVSMPSGVFKPYAGVSTAVLIFTNG------GNTEKVWFYDM 400

Query: 431 WTSIRNEGKKRRII-NDDQRRQILDIYVSRENG 462
                +   KR  +        I++ + +R   
Sbjct: 401 EADGYSLDDKRTPLDRKGDIPDIIERFRNRREE 433


>gi|256810223|ref|YP_003127592.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793423|gb|ACV24092.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 502

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 161/450 (35%), Gaps = 66/450 (14%)

Query: 49  EPTRSAVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLES 102
           E     + +KY     +  D +    +       +  E         N       N L  
Sbjct: 60  EEYIPVIDKKYRWSNWAKRDWIGKPKECLKEFVDDVDEEFKKIDKPENAIIHFINNILFP 119

Query: 103 YIASFSDNA-KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           Y+ + S    +          +  +++    L  + +    I+   +    +V+S IYE 
Sbjct: 120 YLRNLSGTPEREKVAQIFMEISGNKMKSPYNLMDVIEKIDKID-PRNYEDTQVLSQIYEE 178

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           ++   GSE      +F TPR V+     ++           P +   ++DP  G+ GFL 
Sbjct: 179 ILLNMGSEAGWS-GEFYTPRPVIRFIVKII----------KPKVGEKIFDPFGGSAGFLV 227

Query: 222 DAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +A  ++ D           +I      +G E +P  + +    M++  +       L+ N
Sbjct: 228 EAYKYIKDKLGDKITVQEEEILQRETFYGHEKKPLPYLLGTMNMILHGI-------LTPN 280

Query: 276 IQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             + ++L +D+      +++   ++NPPFG K            +N  +    P    + 
Sbjct: 281 YYRRNSLMEDVHNVPEHEKYDVIMTNPPFGGK------------ENKIVQNNFP--YPVQ 326

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               L L ++  KL+     GGRAA++L    +  G  G    EIRR LLE   + AIV+
Sbjct: 327 ATEALALQYIMRKLK----DGGRAAVILPEGQIMFG--GGKFKEIRRELLEKFNVFAIVS 380

Query: 393 LPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LP  +F      + T +          +      I     +  +  +  K+  I D    
Sbjct: 381 LPQGVFSQMGAGVKTNIVFFEKSGEPTKE-----IW----YYELEGKFTKKNKIKDKDFE 431

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             L  +  RE  + S ++       R   +
Sbjct: 432 DALKKFEKREISENSWIVSIEEIKKRDYDL 461


>gi|188585422|ref|YP_001916967.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350109|gb|ACB84379.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 621

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/577 (18%), Positives = 196/577 (33%), Gaps = 85/577 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              I++  E L G+ +  ++  VI P   ++ +                           
Sbjct: 3   HKHIFQLCEHLRGELQPEEYLDVIFPVLTIKHISE------------------------- 37

Query: 72  FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
                   +Y   + + + L ++  N    +E  I     N      ++  ++ +     
Sbjct: 38  ----TKSPYYIPEDATWNCLIASGLNLVKRVEKAIELIEGN------NYRLNNVLNIFPG 87

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             L      NF    L  D + D       + +I  F   + + +  + T   +  L   
Sbjct: 88  KSLSDVNLYNFM---LGIDEIQDH--KQFLKTVIDHFSKRIGKASGVWHTSNTLNELIVR 142

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L+   D            + YD T G    L +A       G        L  +GQE++P
Sbjct: 143 LIAPMDG-----------SFYDGTAGLCNTLIEASEFAEQEGG------ALQLYGQEIDP 185

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           +  A+    ++      D   +   +++   T   +    K F Y   N PFG +    +
Sbjct: 186 KIWALGKINLIFNECH-DVVLEREDSLRNPMTTEDNNL--KTFDYIGMNIPFGLRDWGVE 242

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                E +    GRF  G+P    G M F++H    L    N  G+AAIV+    LF   
Sbjct: 243 -----EARRDLFGRFRYGIPSKQHGDMAFILHALTSL----NRSGKAAIVVPHGVLFR-- 291

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
            G  E++IR  L+ ND+IE +V LP+ L   TNI   + IL+  K EE   K+ ++NA D
Sbjct: 292 -GGREAKIREKLINNDVIEGVVDLPSGLLAGTNIPVSIIILNKLKPEESTEKIFMVNAKD 350

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           +         K   +  +    I++ Y+ ++    FS  ++        + V        
Sbjct: 351 I-------EHKGFELPREDLDMIIEAYIRKDTIDGFSMWINREDIIDHSLLVKNYFEDCE 403

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           +    G   ++          +         + +    Y    +ES   + ++ +  +  
Sbjct: 404 VTTPIGKFEIDRKDYENNTETVSLKSLGTFYRGLNTHAYKTQKSESPTHKILQLSNVENG 463

Query: 549 KVKASKS---FIVAFINAFGRKDPRADPVTDVNGEWI 582
           ++    +         N    +    D +    G  I
Sbjct: 464 EIFLENADSYNAKELKNPSSYEVQPGDVIISSRGNSI 500


>gi|313682025|ref|YP_004059763.1| n-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313154885|gb|ADR33563.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 495

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/519 (19%), Positives = 184/519 (35%), Gaps = 81/519 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + + I +  + L  D   +        I     L+ L    +          + Y     
Sbjct: 1   MESKINRITDILRRDDGISGAMHYTEQISWILFLKFLNDLEDSKADEALLIGKDYNYILD 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNAKAIFEDF 118
                 ++         +                 L SY+  F        + K      
Sbjct: 61  DKFKWSNWAVPKVNGKIDLINAKSGADLLDFVNKELFSYLKGFKNITEDPKSIKYKIGAI 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     + +I      ++ H  +     +S IYE L++  GS+      +F 
Sbjct: 121 -FEYLDNRIANGHTIREILDIIDELDFHNQS-DLFQLSIIYEKLLKDMGSDGGNS-GEFY 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++ + T ++          +P + +T+YDP  G+ GFL +A NH+    +      
Sbjct: 178 TPRPLIKVMTDVV----------NPQVGQTIYDPAVGSCGFLIEAYNHIRYLDAKENKQR 227

Query: 239 IL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-- 285
            +              G E  P ++ + V  M++  +ES        NI + +TL+KD  
Sbjct: 228 DISVNQLKFLSEDTFFGNEKTPLSYVMGVMNMILHGIES-------PNISKTNTLTKDIR 280

Query: 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            L    R+   L+NPPFG K        EKE              K +   +LFL H+ N
Sbjct: 281 GLEEKDRYDIILANPPFGGK--------EKEQIQQNFP------IKSNATELLFLQHMMN 326

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L++     GR  +V+    LF  +  +    +++ LLE   +  I++LP+ +F   + +
Sbjct: 327 SLKV----NGRCGVVIPEGVLF--QTNNAFQAVKQELLERFNVHTILSLPSGVFLPYSGV 380

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRIINDDQRRQILDIYVSRE 460
            T +       +            +D++    N   +  K + I  D   + L ++  R+
Sbjct: 381 KTNVIFFDRNGST-----------SDIFYYEVNPLSKLTKNKPITYDHFTEFLAVWKERK 429

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
               S +++        I    P R   I  K+ +  +E
Sbjct: 430 ITDNSWIVNINDIKDFDISAKNPNRNETIDHKSPIELVE 468


>gi|315586430|gb|ADU40811.1| type I restriction enzyme M protein [Helicobacter pylori 35A]
          Length = 543

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/541 (14%), Positives = 177/541 (32%), Gaps = 68/541 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E            + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPDQKIQDYKDFNEEEKEDFFLTLIDERLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L++     S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTTSTDETTIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLGKLKNFDFKQAFLNLQNQQSYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++  L    +  +     +G+TL+    + K      Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAI-----EGNTLTNPYHSKKCKGEMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPPF   +  +   + +   +  LG   P +PK     M              N  G+
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLNNKGK 367

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AIV+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +
Sbjct: 368 GAIVVPTGFISAKS--GVENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVIFFKKTPS 425

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG 474
                +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +    
Sbjct: 426 A---NEVVLIDASKLGEEYTENKNKKMRLRGSDIDLILETFQNKTQKAGFCTLVSFDEII 482

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWR-------KLSPLHQSFWLDILKPMMQQIY 527
            +   +      +       +++ E +   +        L    QS   +IL+ +    Y
Sbjct: 483 EKNYSLNPGQYFTIEDTNEKISQAEFENLMQQYSSELTSLFDESQSLQQEILETLGNLNY 542

Query: 528 P 528
            
Sbjct: 543 D 543


>gi|209523415|ref|ZP_03271970.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209496157|gb|EDZ96457.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 507

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 162/466 (34%), Gaps = 79/466 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L+  LE  R+   E         +D     +   +S++   +     +   +  
Sbjct: 32  LLFLKYLDD-LEEERAMEAELLGKSYEFILD-----EAYRWSYWAAPKLPSGDIDRNHAL 85

Query: 96  --------TRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                     N L  ++  F      +D  +    +  F     + +    L +  +   
Sbjct: 86  TGDDLIEYVNNVLFPHLQGFKQRAASADTIEYKIGEI-FGEIKNKFQSGYGLREALELVD 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            ++          +S++YE  I+  G+       ++ TPR ++     ++          
Sbjct: 145 ELKFQTQKEK-HELSHLYETKIKNMGN-AGRNGGEYYTPRPLIRAMIRVV---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAG 258
            P +   +YD  CG+ GFL ++ +++          ++       G+E +   + + +  
Sbjct: 193 KPKIGDRIYDGACGSAGFLCESYDYLRQGKLTTQQLRLLQTGTLFGKEKKSLAYVIAIMN 252

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +++  +++      +   +       D+    RF+  L+NPPFG             ++ 
Sbjct: 253 LILHGIDAPNIIHTNTLAEN----LSDIQEKDRFNVVLANPPFGG------------NER 296

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E+ +  P   K  + + LFL H    L++    GGRA IV+ ++ L N    S    +R
Sbjct: 297 KEVQQNFP--VKTGETAFLFLQHFIKILKV----GGRAGIVIKNTFLSNSDNAS--RALR 348

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-RGKVQL------------- 424
           + LL +  +  I+  P   F    + T +         +  +G                 
Sbjct: 349 QQLLSDCNLHTILDCPGGTFIGAGVKTVVLFFEKGNPSDSLQGMPLFSQGKSHAEGMATR 408

Query: 425 -INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            I    L         K   +ND+  ++ +++  +  +   S  +D
Sbjct: 409 KIWYYQL--DPGRNLGKTNPLNDEDLQEFVELQATFADSDKSWSVD 452


>gi|307825359|ref|ZP_07655578.1| nucleotidyltransferase substrate binding protein, HI0074 family
           [Methylobacter tundripaludum SV96]
 gi|307733534|gb|EFO04392.1| nucleotidyltransferase substrate binding protein, HI0074 family
           [Methylobacter tundripaludum SV96]
          Length = 623

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 151/447 (33%), Gaps = 61/447 (13%)

Query: 38  FTLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG- 92
              L+ L   LE  ++   E    KY          E++              +L+    
Sbjct: 32  LLFLKFL-DGLEQDKAMEAELEGKKYAFILDLPYRWENWAAPKDNDGKPDHNKALTGDDL 90

Query: 93  STNTRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                  L  Y+  F   A           +  F     ++     L +I  +   +   
Sbjct: 91  RDFVDRELFPYLHGFKQKADGPNTIEYKIGEI-FGEIKNKIHSGYNLREIIDHIDELRFR 149

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             T     +S++YE  I+  G+       ++ TPR ++     ++           P + 
Sbjct: 150 SQTEK-HELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAIVQVV----------QPKIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            ++YD   G+ GFL +A +++   G      H I      +G+E +   + + +  M++ 
Sbjct: 198 ESIYDGAVGSAGFLCEAFDYLTAQGNLTTGDHNILQTRTFYGKEKKSLAYVIAIMNMILH 257

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E+      +   +       D+    R+   L+NPPFG K  K+              
Sbjct: 258 GIETPNIIHTNTLAEN----LADIQDKDRYDIVLANPPFGGKERKEVQQN---------- 303

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  +  + + LFL H    L      GGR  +V+ ++ L N    S    +R+ LL
Sbjct: 304 ----FPIRTGETAFLFLQHFIKMLRA----GGRGGVVIKNTFLSNTDNAS--VSLRKLLL 353

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+  +  I+  P   F    + T +          +    QL    ++         K  
Sbjct: 354 ESCNLHTILDCPGGTFQGAGVKTVVLFFEKGAPTRKTWYYQLEPGRNMG--------KTN 405

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLD 469
            +ND    + +++  +  +   S  +D
Sbjct: 406 PLNDADLAEFIELQQTNADSPKSWSVD 432


>gi|217031669|ref|ZP_03437174.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128]
 gi|298736617|ref|YP_003729143.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|216946869|gb|EEC25465.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128]
 gi|298355807|emb|CBI66679.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 543

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/536 (14%), Positives = 170/536 (31%), Gaps = 55/536 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNT- 83
              ++  +I    L + L    E         +    +   N + +       Y      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFFFETKFPNKTIQDYKDFNEEEKEIFFTDLYDNKLPK 90

Query: 84  -------SEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-----------------EDFD 119
                  S          +    L++     S N   +F                 +  +
Sbjct: 91  LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESVSQYIN 150

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
             S  A   KA L      NF    L+          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTKALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+          P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLV--------SEPTQSVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    R  +  N       SK+     +  + +SN
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYAIEGNTLINPYHSKECHG--KMDFIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSNKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++ +  +        E++I R L+   L+  +V +P+ +F  T     +       + + 
Sbjct: 371 IVPTGFISAKS--GVENKIIRHLVNERLVYGVVCMPSQVFANTGTNVSIIFFQKTPSAK- 427

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 428 --EVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTQKADFCALVSFDEITEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
             +      +       +++ E +   ++ S    S + +      + +   G   
Sbjct: 486 YSLNPGQYFTIEDTSEKISQEEFENLMQQYSSELTSLFDESQNLQQEILETLGNLN 541


>gi|297538978|ref|YP_003674747.1| adenine-specific DNA-methyltransferase [Methylotenera sp. 301]
 gi|297258325|gb|ADI30170.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylotenera sp. 301]
          Length = 484

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 157/446 (35%), Gaps = 61/446 (13%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ L  ALE T++   E         +D                ++  +   + +   
Sbjct: 33  LFLKYL-DALEQTKAMEAELEGKAYNFIVDAAYRWPTWAAPKTTDGKFDHNNALTGDDLK 91

Query: 99  N-----LESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           +     L  Y+  F       +  +    +  F     +++    L ++ +    +  + 
Sbjct: 92  DFVNLKLFPYLKGFKQRATGPNTIEYKIGEI-FGEINNKIQSGYNLREVIERIDELSFN- 149

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S++YE  I+  G+       ++ TPR ++     +           +P +  
Sbjct: 150 TQAEKHELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAMIQVT----------NPKIGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           T+YD   G+ GFL +A +++        S          +G+E +   + + +  M++  
Sbjct: 199 TIYDGAVGSAGFLCEAFDYLRSQPNLSTSDLATLQTSTFYGKEKKSLAYVIAIMNMILHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+      +   +  S    D+    R+   L+NPPFG K            +  E+ +
Sbjct: 259 IEAPNIIHTNTLAENIS----DIQEKDRYDIILANPPFGGK------------ERAEVQQ 302

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             P   K  + + LFL H    L      GGRAA+V+ ++ L N    S    +R+ LLE
Sbjct: 303 NFP--IKTGETAFLFLQHFIKSLRA----GGRAAVVIKNTFLSNTDNAS--VSLRKLLLE 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  +  ++  P   F    + T +               QL    ++         K   
Sbjct: 355 SCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAPTRNTWFYQLDPGRNMG--------KTNP 406

Query: 444 INDDQRRQILDIYVSRENGKFSRMLD 469
           +NDD   + L +  +  +   S  + 
Sbjct: 407 LNDDDLAEFLTLQKTFADSPKSWNVS 432


>gi|260438000|ref|ZP_05791816.1| type I restriction-modification system, M subunit [Butyrivibrio
           crossotus DSM 2876]
 gi|292809479|gb|EFF68684.1| type I restriction-modification system, M subunit [Butyrivibrio
           crossotus DSM 2876]
          Length = 475

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 157/463 (33%), Gaps = 77/463 (16%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPF---TLLRRLECALEPTRSAVR 56
           MTE    + ++L   +   A  +        F   I        L+      E       
Sbjct: 1   MTENQIKTESALIKKVGDIANVMAAAGVG--FTDYITQLTYILFLK----MDEEKEEMGL 54

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           E  +  G    DL                     L  T+     E  +   +   + +  
Sbjct: 55  ESTIPDGYKWKDLV-------------------NLNGTDLIEKYEEILRELAKE-EGLIG 94

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F+    +++    L KI +       +   +   +   IYE ++ + G +   GA  
Sbjct: 95  TI-FTKAANKIDSPVKLAKIIEMVKSENWY--MMEGDLKGAIYESILEKNGQDKKSGAGQ 151

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR ++     +            P +  T+ DP CGT GFL  A  H+     +   
Sbjct: 152 YFTPRALIQAMVDVT----------DPQITETVADPACGTAGFLLAAYEHMKKQAKNSNQ 201

Query: 237 PPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              L      G +  P    +    + +  + +     + ++    ++        K + 
Sbjct: 202 LTNLKNNALFGADNTPLVVTLASMNLYLHDIGTHTSPIVCQDSLLDTS-------DKMYD 254

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG + +           +GE+        K SD  + FL H+ + ++     G
Sbjct: 255 VILANPPFGTRPQG----------SGEVSAVRSDFIKTSDNQVNFLQHIMSIVKT----G 300

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A+VL  + L +G A +   ++R  LL++  +  I+ LPT +F+   + T +      
Sbjct: 301 GRVAVVLPDNVLTDGNATA---KVREKLLKDFNLHTILRLPTGIFYANGVKTNVLFFEKG 357

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
              E       I   D    I++    ++ +  +     +  Y
Sbjct: 358 SPTED------IWVYDYRIGIKHTL-VQKPLTREHLDDFVSCY 393


>gi|253998801|ref|YP_003050864.1| adenine-specific DNA-methyltransferase [Methylovorus sp. SIP3-4]
 gi|253985480|gb|ACT50337.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylovorus sp. SIP3-4]
          Length = 497

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 163/461 (35%), Gaps = 63/461 (13%)

Query: 38  FTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +        LE    +   ++L +     D E         F N   +     
Sbjct: 34  MFFLKIYDDREAEIELLEDDYKSPLPEHLRWRHWAADPEGMTGDELSDFVNLQLFPTLK- 92

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
               T+  L       +   + +FED         ++   L+ ++      I  + +T  
Sbjct: 93  ----TKLILIGPTGERAKVIRNVFED-----AYNYMKSGTLMRQVINKICEINFN-NTQD 142

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                +IYE +++   S  +  A +F TPR V       +           P +  ++ D
Sbjct: 143 RHTFGSIYEQILKDLQSAGN--AGEFYTPRAVTKFIVDRV----------DPQLAESVLD 190

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFL   ++H  +    +     L     HG E +   H +C   M++  +++  
Sbjct: 191 PACGTGGFLACTIDHKREKYVKNAADEALLVASIHGVEKKALPHMLCTTNMILHGIDTPT 250

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           + +    + +     KD     R H  ++NPPFG     ++D VE +          P  
Sbjct: 251 QIEHDNMLSRR--AYKDYGDADRVHVIVTNPPFGG---MEEDGVENQF---------PAT 296

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LF+  +   L+      GRAA+VL    LF       ++ +++ LLE   + 
Sbjct: 297 LRTRETADLFMALVVKLLKP----HGRAAVVLPDGFLF---GEGMKTRLKQMLLEQCHLH 349

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F   T I T +   +  K E      + +   +  +        K R +  
Sbjct: 350 TIVRLPNGVFNPYTGIKTNILFFTK-KPEAEWPATKEVWFYEHPYPEGVTSYNKTRPMQF 408

Query: 447 DQRR-------QILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           ++            D + +R+    +  +       R   +
Sbjct: 409 EEFATECAWWGDEADGFRARKETPQAWKVSLEDIAARNYNL 449


>gi|300087442|ref|YP_003757964.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527175|gb|ADJ25643.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 484

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 153/452 (33%), Gaps = 71/452 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ L       +    E+ L         +  +          +  + +     N  
Sbjct: 32  LLFLKYL-------QGLEEERALQAELGGWKYKCILDEPYRWNSWAAPKNGNGKIDHNKA 84

Query: 98  NNLESYIASFSDNAKAIFEDFD----------------FSSTIARLEKAGLLYKICKNFS 141
              +  +   +       + F                 F     ++     + +I  +  
Sbjct: 85  KTGDDLVEFVNTKLFPYLQSFKQTATGPDTIEYKIGEIFGEIKNKITSGYNMREIIDHVD 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +     T     +S++YE  I+  G+       ++ TPR ++     ++          
Sbjct: 145 ELRFRSQTEK-HELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRSIIKVV---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVA 257
           +P +  T+YD  CG+ GFL ++ +++    +              +G+E +   + + + 
Sbjct: 193 NPQIGETIYDGACGSAGFLCESFDYLKASNTLTTRDMDTLQKSTFYGKEKKSLAYVIAIM 252

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  +E+      +   +       D+    R+   ++NPPFG K            +
Sbjct: 253 NMILHGIEAPNILHTNTLTEN----LADIQEKDRYDIIMANPPFGGK------------E 296

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             E+ +  P   +  + + LFL H    L+     GGRA IV+ ++ L N    S    +
Sbjct: 297 RKEIQQNFP--IRTGETAFLFLQHFIKMLKA----GGRAGIVIKNTFLSNSDNAS--VSL 348

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ L+E+  +  I+  P   F    + T +          +    QL    +L       
Sbjct: 349 RKLLMESCNLHTILDCPGGTFLGAGVKTVVLFFEKGAPTRKTWYYQLDPGRNLG------ 402

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
             K   +ND+   + +++  +  +   S  ++
Sbjct: 403 --KTNPLNDNDLAEFVELQKTFADSPKSWSVE 432


>gi|170079467|ref|YP_001736103.1| Type I N6 DNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887136|gb|ACB00848.1| Type I N6 DNA Methyltransferase [Synechococcus sp. PCC 7002]
          Length = 482

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 173/493 (35%), Gaps = 74/493 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ L+          RE   +  G   +          S+    +     + +    +
Sbjct: 33  LFLKYLDDL-----ETDRESKASLTGEKYEPLLDEPYRWKSWAYPRDEKGELIKTAAVGD 87

Query: 99  NLESYIASFSDNAKAIFEDFD------------FSSTIARLEKAGLLYKICKNFSGIELH 146
           +L ++++         F+D+             FS    + +    L ++ ++   +   
Sbjct: 88  DLIAFVSGELFPYFRGFKDYVEPGTFGAKIGEIFSGVSNKFQSGYNLREVLESIDALRFQ 147

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +S++YE  I   G+       ++ TPR ++     ++           P + 
Sbjct: 148 TQQEK-HELSDLYETRINNMGN-AGRNGGEYYTPRPLIRAMIRVI----------KPQLG 195

Query: 207 RTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            T+YD  CG+ GFL +A   +       +  +       +GQE +   + + V  +++  
Sbjct: 196 ETIYDGACGSAGFLCEAYEFLRPLVKSAAELERLQTATLYGQEKKGLAYIIGVMNLILHG 255

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E+        NI Q +TL++++       R    L+NPPFG K   +++ +++      
Sbjct: 256 VEA-------PNIIQMNTLTENIQGFQEKDRHDVILANPPFGGK---EREEIKQNF---- 301

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                       + + LFL H   +L++    GGRAA+V+ ++ L N    S    +R+ 
Sbjct: 302 -------TIATGETAFLFLQHFIKRLKV----GGRAAVVIKNTFLSNADNAS--RALRQE 348

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L  +  +  ++  P   F    + T +         E+      I    L         K
Sbjct: 349 LTSSCNLHTVLDCPAKTFLGAGVKTVVLFFEKGTPTEK------IWFYQL--DPGRSLGK 400

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              +NDD  ++ ++   +    + S  L  +        +      +   D       E 
Sbjct: 401 TNPLNDDDLKEFVEFQSTFRESERSWFLALKDVDPASFDLSVKNPNAPEDDPLR----EP 456

Query: 501 DITWRKLSPLHQS 513
           +    +++ L Q 
Sbjct: 457 EEILAEIADLDQE 469


>gi|261837872|gb|ACX97638.1| type I restriction enzyme M protein [Helicobacter pylori 51]
          Length = 543

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/513 (14%), Positives = 167/513 (32%), Gaps = 55/513 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEGFFLKLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L++     S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTKSTDETTIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + S+      ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQIG--------TD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SK+        Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKECKGE--MDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              +  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDEGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T             +E+ 
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSAIFFKKTPSED- 427

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRR 477
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     + 
Sbjct: 428 --EVILIDASKLGEEYTENKNKKTRLKGSDIDLILETFQNKTQKADFCALVSFDEIIEKN 485

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +              +++ E +   ++ S  
Sbjct: 486 YSLNPGQYFIIEDTSEKISQAEFENLMQQYSSE 518


>gi|283853809|ref|ZP_06371031.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283570796|gb|EFC18834.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 501

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 163/467 (34%), Gaps = 82/467 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              LR L+  LE  R+   E         ID     +   +S +   +    +    N  
Sbjct: 32  MLFLRYLDD-LEAERAMEAELLGKDYSYIID-----EAHRWSKWAAPKKQDGSFDHDNAL 85

Query: 96  --------TRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                     + L  Y+  F       D  +    +  F    ++ +    L    +   
Sbjct: 86  TGDDLIAYVNDVLFPYLRGFKQRASSPDTIEYKIGEI-FGEIKSKFQSGYSLRDALELVD 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +           +S++YE  I+  G+       ++ TPR ++     ++          
Sbjct: 145 QLHFR-SQKEKHELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAMVRVI---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA--------DCG-------SHHKIPPILVPHGQE 246
            P +  T+YD  CG+ GFL +A +++         + G          +        G+E
Sbjct: 193 KPKIGETIYDGACGSAGFLCEAFDYLRYGPDGKESENGNGSTLTVDQLRALQTSTFFGKE 252

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +   + + +  M++  +E+      +   +       D+    R+   L+NPPFG K  
Sbjct: 253 KKSLAYVIAIMNMILHGIEAPNIIHTNTLAEN----LADVQEKDRYDIILANPPFGGK-- 306

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                     + GE+ +  P   K  + + LFL H    L+     GGRAA+V+ ++ L 
Sbjct: 307 ----------ERGEIQQNFP--IKTGETAFLFLQHFIKYLKA----GGRAAVVIKNTFLS 350

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           N    S    +R+ LL++  +  I+  P   F    + T +       +  +      + 
Sbjct: 351 NSDNAS--RALRQELLQSCNLFTILDCPGGTFLGAGVKTVVLFFQKGASTRK------VW 402

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              L      +  K   +NDD   + + +  +  + + S ++D +  
Sbjct: 403 YYTL--DPGRKMGKTTALNDDDLAEFVSLQATFADSEKSWIMDVKDI 447


>gi|257467221|ref|ZP_05631532.1| type I restriction-modification system M protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 283

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 123/287 (42%), Gaps = 32/287 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             GQE+      +    M +  +  +     + +I++G TL   L   ++ F   +SNPP
Sbjct: 14  FFGQEINMTNFNLARMNMSLHNINYN-----NFSIKRGDTLLNPLHNEEKPFDAIVSNPP 68

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           +  KW  D D      +     RF P   L   S     F+MH  + L    +  GRAAI
Sbjct: 69  YSIKWVGDADPTLINDE-----RFAPAGKLAPKSYADYAFIMHSLSYL----SSKGRAAI 119

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V      +   A   E  IR++L++N+ ++ ++ LP +LFF T+IAT + +++  KTE R
Sbjct: 120 VCFPGIFYRKGA---ERTIRKYLVDNNFVDCVIQLPDNLFFGTSIATCILVMAKNKTENR 176

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRR 477
              V  I+A+  +    N      I+ +     I++ + +RE  + FSR +         
Sbjct: 177 ---VLFIDASKEFKKETN----NNILEEKNINTIVEEFRNREEKEYFSRYVGREEIEDND 229

Query: 478 IK--VLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILK 520
               V   +    I +   +  L  +I  T RK+  L  S    I K
Sbjct: 230 YNLSVSTYVEKEDIREIIDIKVLNQEIEETVRKIDSLRASINEIIKK 276


>gi|223983263|ref|ZP_03633456.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM
           12042]
 gi|223964756|gb|EEF69075.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM
           12042]
          Length = 500

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 174/489 (35%), Gaps = 60/489 (12%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLG 92
           I     +R L+              L F     D     +  + G     +  +      
Sbjct: 32  ITYLMFIRDLDDVDNKNAKENAILGLPFKSIFSDQVQIGERSINGNQLKWSVFHDFPAGK 91

Query: 93  STNTRNNL-ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTV 150
                 +    +I +   +  + +  +     I +L    +L K+  +   I +    + 
Sbjct: 92  MYEIMQDWVFPFIKNLHADKNSAYSKY-MDDAIFKLPTPLVLSKVIDSLDDIYDSMSKSE 150

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  ++YE+L+ +  +        F TPR ++ +   L+          +P    T+ 
Sbjct: 151 KKDIRGDVYEYLLSKIATAGRN--GQFRTPRHIIEMMVKLV----------NPKPEDTIC 198

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIR 262
           DP CGT GFL +A  ++ D   +  +            + HG +++     +    M+  
Sbjct: 199 DPACGTAGFLVEASTYLIDTYKNDILMNKQNRDHYMNHMFHGFDMDRTMLRIGAMNMMTH 258

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +ES         I+   +LS       ++   L+NPPF       K  ++ E  + +L 
Sbjct: 259 GVES-------PFIEYRDSLSDQNLDQDKYSLVLANPPF-------KGTLDAESVSSDLL 304

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +    + K     +LFL      L++    GGR A ++    LF   + +   +IR+ L+
Sbjct: 305 K----VAKTKKTELLFLALFIRMLKI----GGRCACIVPDGVLF--GSSNAHVQIRKALI 354

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E + +EA++++P+ +F     ++T + I +        G    +   D+     +   KR
Sbjct: 355 EENRLEAVISMPSGVFKPYAGVSTGILIFTK----TGHGGTDKVWFYDMKADGFSLDDKR 410

Query: 442 RIINDDQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            I+ ++    I++ + +      R+    S  ++          +        + +K   
Sbjct: 411 SIVKENDIPDIINRFKNLDKEIDRKRTDQSFFVNKEEIVNNNYDLSINKYKEVVYEKVEY 470

Query: 496 ARLEADITW 504
           A     +  
Sbjct: 471 APTHEILVD 479


>gi|294782548|ref|ZP_06747874.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481189|gb|EFG28964.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 498

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 192/499 (38%), Gaps = 60/499 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+   +  +   +E+ L     N D +            ++   L         
Sbjct: 35  LIFMKRLD---QEEQRKEKEQKLGSIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  ++  ++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  VRNEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSG--KNGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++              +K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKKNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 258 ------TPKLKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLF--GASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +EA++++P+ +F     ++T + I +       +G    +   D+     +   KR  + 
Sbjct: 355 LEAVISMPSGVFKPYAGVSTGILIFTK----TGKGGTDNVWFYDMTADGYSLDDKRNPVE 410

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEAD 501
           ++    I++ + + EN K  +  D   F  ++  +     +S      +    +   E  
Sbjct: 411 ENDIPDIIERFSNLENEKDRKRTDKSFFVPKQEIIDNDYDLSINKYKEIVYEKVEYEEPK 470

Query: 502 ITWRKLSPLHQSFWLDILK 520
           +   KL  L +S    + +
Sbjct: 471 VILEKLEELSKSIDEKLKE 489


>gi|167892258|ref|ZP_02479660.1| N-6 DNA methylase [Burkholderia pseudomallei 7894]
          Length = 472

 Score =  176 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 166/462 (35%), Gaps = 74/462 (16%)

Query: 38  FTLLRRLECA---LEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+ ++     LE  +   R    K L +     D E     A  +F NT  +     
Sbjct: 20  MFFLKIIDDQDQQLEVMQDGYRSPIPKALQWRTWAADPEGITGDALIAFINTELFPQLKE 79

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                +N   S +       + +FED         ++   L+ ++    SG++ + D   
Sbjct: 80  LPVTGKNANRSRV------VRGVFED-----AYNYMKSGQLMRQVVNKISGVDFN-DLAE 127

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            +   +IYE L+    S  +  A ++ TPR V       +           P     L+D
Sbjct: 128 RKHFGDIYEQLLNDLQSAGN--AGEYYTPRAVTAFMVDRI----------DPKPGEILFD 175

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG---QELEPETHAVCVAGMLIRRLESDP 268
           P+ GTGGFLT ++ H+ D           +  G    E +   H +CV  ML+  +E   
Sbjct: 176 PSVGTGGFLTCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLPHMLCVTNMLLHGIED-- 233

Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  ++  +TL++   +     R    L+NPPFG K   ++D +E            
Sbjct: 234 ----PSFVRHDNTLARPYISYGQADRVDIILTNPPFGGK---EEDGIESNF--------- 277

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL      L+     GGRA IVL    LF       ++ ++  LLE  
Sbjct: 278 PAHLRTKETADLFLALFIRLLKP----GGRAGIVLPDGSLF---GEGVKTRLKAQLLEEC 330

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RI 443
            +  IV LP  +F    +I T L      +  +       +   +       +     R 
Sbjct: 331 NLHTIVRLPNSVFKPYASIGTNLLFFDKGEPTKD------VWFYEHRVPEGQKAYSMTRP 384

Query: 444 INDDQRRQILDIY-----VSRENGKFSRMLDYRTFGYRRIKV 480
           I  +  +  ++ +       R+  + +  +       RR  +
Sbjct: 385 IRLEHLQDCVEWWGGAARKGRQETEQAWKVSLADIKARRYNL 426


>gi|332184236|gb|AEE26490.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida 3523]
          Length = 482

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 176/486 (36%), Gaps = 95/486 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L                    +   LE+ +    Y F    +Y  +T  +     
Sbjct: 32  LFLKFLNDY----------------ENEKSLEAELTGEDYIFVLDEKYRWNTWAAPKGAD 75

Query: 94  -------TNTRNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLL 133
                   ++ ++L  ++          F+  D             F     R+     L
Sbjct: 76  GKLDVINADSGDDLLEFVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTL 135

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +      +  +        +S +YE+L++  GS+      +F TPR +V     ++  
Sbjct: 136 RDVINEIDELNFNKKE-DLYQLSQVYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV-- 191

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPE 250
                   +P   +T+YDP  GT GFL DA  H+       +  K        G+E  P 
Sbjct: 192 --------NPQAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPL 243

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEK 307
           ++ + V  M++  +        S NI + +TL KD   L    R+   L+NPPFG K   
Sbjct: 244 SYVMGVMNMILHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK--- 293

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                    +   +    P   K +   +LFL H+   L+L    GGR  +V+    LF 
Sbjct: 294 ---------EKATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF- 337

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLIN 426
            +  +    +++ LLEN  +  IV+LP  +F   + + T +         +R G    I 
Sbjct: 338 -QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIF 390

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
             +   +   +  K + I  +   + L+I+ SR+  + S ++         I    P ++
Sbjct: 391 YYE--VNPPYKLTKNKPIQFEHFDEFLEIWQSRKLTENSWIVKVEDIKDYDISAKNPNKV 448

Query: 487 SFILDK 492
             I  K
Sbjct: 449 ETIEHK 454


>gi|330999088|ref|ZP_08322811.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
 gi|329575609|gb|EGG57143.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
          Length = 473

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 104/539 (19%), Positives = 198/539 (36%), Gaps = 79/539 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL   +WK A+ + G      F   I   T L  L+   E       E  +  G   
Sbjct: 4   TETSLVKKVWKLADVMAGAGIG--FTDYITQLTYLLFLKMDQENVDLMDEESKIPEGLRW 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              E+  K  G    +  E  L TL         E  I +             F+    +
Sbjct: 62  ---ENLRKETGEDQLSLYERILRTLSKQ------EGLIGTI------------FTKAQNK 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E    L K+       +     +   V   +YE ++++ G +   GA  + TPR ++  
Sbjct: 101 IESPVYLSKLISFIDQEQWLI--LKGDVKGALYEAILQKNGQDKKSGAGQYFTPRPLIDA 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPH 243
              ++          SP +  T+ DP CGT GFL  A N++        +   L      
Sbjct: 159 IVDVI----------SPKIGETVIDPACGTAGFLLSAFNYMKGQSMDTDLNIKLRNSSLK 208

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G ++ P    +    + +  +      + S  + Q S + +     K++   L+NPPFG 
Sbjct: 209 GYDITPLVVTLGSMNLYLHGV----GLNSSPIVCQDSLIKEP---DKKYDIVLANPPFGA 261

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +     +    +            + +  +  + FL H+ + L+     GGRA +VL  +
Sbjct: 262 RAAGSVEIHRSDF-----------IKETKNNQINFLQHIMSLLK----SGGRAGVVLPDN 306

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF         E+R+ LL +  +  I+ LPT +F+   + T +         E++GK +
Sbjct: 307 VLFESSG----EEVRKKLLTDFNLHTILRLPTGIFYANGVQTNVLFF------EKKGKTK 356

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
            +   D  + I++       +  +     +  + S +  K     +  T    R    R 
Sbjct: 357 ELWVYDYRSGIKHTLAT-NPLKREDLDDFVSCFSSEDRNKREETYNKDTNPNGR---WRK 412

Query: 484 LRMSFILDKTGLARLEADITWRKLSP--LHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
             +  IL++ G      D++W K     L +    ++LK + ++      A + +++ +
Sbjct: 413 FSIEEILEREG---TNLDLSWIKNDSDALEEMKIPELLKLLTEKKQNISDAVTELQKEL 468


>gi|167917015|ref|ZP_02504106.1| N-6 DNA methylase [Burkholderia pseudomallei BCC215]
          Length = 485

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 166/462 (35%), Gaps = 74/462 (16%)

Query: 38  FTLLRRLECA---LEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+ ++     LE  +   R    K L +     D E     A  +F NT  +     
Sbjct: 33  MFFLKIIDDQDQQLEVMQDGYRSPIPKALQWRTWAADPEGITGDALIAFINTELFPQLKE 92

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                +N   S +       + +FED         ++   L+ ++    SG++ + D   
Sbjct: 93  LPVTGKNANRSRV------VRGVFED-----AYNYMKSGQLMRQVVNKISGVDFN-DLAE 140

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            +   +IYE L+    S  +  A ++ TPR V       +           P     L+D
Sbjct: 141 RKHFGDIYEQLLNDLQSAGN--AGEYYTPRAVTAFMVDRI----------DPKPGEILFD 188

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG---QELEPETHAVCVAGMLIRRLESDP 268
           P+ GTGGFLT ++ H+ D           +  G    E +   H +CV  ML+  +E   
Sbjct: 189 PSVGTGGFLTCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLPHMLCVTNMLLHGIED-- 246

Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  ++  +TL++   +     R    L+NPPFG K   ++D +E            
Sbjct: 247 ----PSFVRHDNTLARPYISYGQADRVDIILTNPPFGGK---EEDGIESNF--------- 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL      L+     GGRA IVL    LF       ++ ++  LLE  
Sbjct: 291 PAHLRTKETADLFLALFIRLLKP----GGRAGIVLPDGSLF---GEGVKTRLKAQLLEEC 343

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RI 443
            +  IV LP  +F    +I T L      +  +       +   +       +     R 
Sbjct: 344 NLHTIVRLPNSVFKPYASIGTNLLFFDKGEPTKD------VWFYEHRVPEGQKAYSMTRP 397

Query: 444 INDDQRRQILDIY-----VSRENGKFSRMLDYRTFGYRRIKV 480
           I  +  +  ++ +       R+  + +  +       RR  +
Sbjct: 398 IRLEHLQDCVEWWGGAARKGRQETEQAWKVSLADIKARRYNL 439


>gi|332678455|gb|AEE87584.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella cf. novicida Fx1]
          Length = 461

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 99/486 (20%), Positives = 176/486 (36%), Gaps = 95/486 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L                    +   LE+ +    Y F    +Y  +T  +     
Sbjct: 11  LFLKFLNDY----------------ENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKDAD 54

Query: 94  -------TNTRNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLL 133
                   +T ++L  ++          F+  D             F     R+     L
Sbjct: 55  GKLDVINADTGDDLLEFVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTL 114

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +      +  +        +S +YE+L++  GS+      +F TPR +V     ++  
Sbjct: 115 RDVINEIDELNFNKKE-DLYQLSQVYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV-- 170

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPE 250
                   +P   +T+YDP  GT GFL DA  H+       +  K        G+E  P 
Sbjct: 171 --------NPQAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPL 222

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEK 307
           ++ + V  M++  +        S NI + +TL KD   L    R+   L+NPPFG K   
Sbjct: 223 SYVMGVMNMILHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK--- 272

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                    +   +    P   K +   +LFL H+   L+L    GGR  +V+    LF 
Sbjct: 273 ---------EKATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF- 316

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLIN 426
            +  +    +++ LLEN  +  IV+LP  +F   + + T +         +R G    I 
Sbjct: 317 -QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIF 369

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
             +   +   +  K + I  +   + L+I+ SR+    S +++        I    P ++
Sbjct: 370 YYE--VNPPYKLTKNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVADIKDYDISAKNPNKV 427

Query: 487 SFILDK 492
             I  K
Sbjct: 428 ETIEHK 433


>gi|166368435|ref|YP_001660708.1| type I restriction enzyme M protein [Microcystis aeruginosa
           NIES-843]
 gi|166090808|dbj|BAG05516.1| type I restriction enzyme M protein [Microcystis aeruginosa
           NIES-843]
          Length = 495

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 78/509 (15%), Positives = 166/509 (32%), Gaps = 69/509 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--- 94
              ++RL+            K         +LE+            S +       T   
Sbjct: 35  LLFIKRLDDL-------ELAKERRAQRLGENLENPTFTPSQQHIRWSRFKNIDDAETMLQ 87

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
             R+    +I      ++           +  +    LL  + +    I +         
Sbjct: 88  IVRDEAFPFIKDMGQFSRGSTYAKHMKDAVFLIASPALLGTVIEQIEKIPME----DRDT 143

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+++ +  +  +     F TPR ++ +   LL          +PG    + DP C
Sbjct: 144 KGDLYEYMLSKLSTAGTN--GQFRTPRHIIKMMVELL----------APGPREVICDPAC 191

Query: 215 GTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           GTGGFL  A  +V +              + +     + HG + +     +    +++  
Sbjct: 192 GTGGFLVAAAEYVRELKDSEGGRLLHERGNLEHFNNQMFHGFDFDATMLRIGSMNLMLHG 251

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E            + S           F   L+NPPF       K +VEK     +L +
Sbjct: 252 IE------QPIIEARDSLSEDHAGVEDSFTMILANPPF-------KGSVEKSTIAKDLSK 298

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               +   +   +LF+      L+     GG+ A+++    LF   +     +IR  L+E
Sbjct: 299 ----IIDTTKTELLFMALFLRLLKT----GGKGAVIVPDGVLF--GSSKAHKDIRTILVE 348

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +E ++++P+ +F     ++T + I +     E+      +   D+     +   KR+
Sbjct: 349 EHKLEGVISMPSGVFKPYAGVSTAILIFTKLGVREKGTD--FVWFYDMVADGFSLDDKRQ 406

Query: 443 IINDDQRRQILDIYVSRENGKFSR------MLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            I D+    +L  +  R++ K +        +           +          ++    
Sbjct: 407 PIADNDIPDLLRCWQQRDSAKDTNRQGKAFFVPREEIQANAYDLSINRYKEIEYEEVSYE 466

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             +  +   +         LD L+ M+  
Sbjct: 467 PPKVILQKLRALEADIRQDLDALEEMLGD 495


>gi|317013881|gb|ADU81317.1| type I restriction enzyme M protein [Helicobacter pylori
           Gambia94/24]
          Length = 543

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 72/482 (14%), Positives = 164/482 (34%), Gaps = 39/482 (8%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + +    +       + +L      +   ++ ++  Y F      +   L      N + 
Sbjct: 63  KTIRDYKDFNEEEKEDFFLTLSDKQLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRIS 122

Query: 102 SYIASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDT 149
           S  A             A+FE      +    R      L    KNF+     + L    
Sbjct: 123 SNNAELFNTKSTDKTTIALFESVSQYINEESKRANFTRALLDKLKNFNFKQAFLNLQNQQ 182

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D   + I+E+L++ + +       ++ TP  +  +   LL++         P     +
Sbjct: 183 GYD-FFAPIFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLVN--------KPTQSVKI 233

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ GTG  L    + +               + Q++  ++  +    +++  L    R
Sbjct: 234 YDPSAGTGTLLMALAHQIG--------TDSCTLYAQDISQKSLRMLKLNLILNDLTHSLR 285

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             +  N       SKD     +  + +SNPPF   +  +   + +   +  LG   P +P
Sbjct: 286 YAIEGNTLINPYHSKDHKG--KMDFIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIP 341

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     M              +  G+ AI++ +  +        E++I R L++  L+  
Sbjct: 342 KNDKSKMPIYTLFFQHCLNMLSPKGKGAIIVPTGFISAKS--GIENKIVRHLVDERLVYG 399

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ +P+ +F  T     +       + +   +V LI+A+ L         K+  +     
Sbjct: 400 VICMPSQVFANTGTNVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRASDM 456

Query: 450 RQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
             IL+ + ++     F  ++ +     +   +      +       +++ E +   ++ S
Sbjct: 457 DLILETFQNKAPKSDFCALVSFDEITEKNYSLNPGQYFTIEDTSETISQAEFESLMQQYS 516

Query: 509 PL 510
             
Sbjct: 517 SE 518


>gi|118497742|ref|YP_898792.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella tularensis subsp.
           novicida U112]
 gi|194323713|ref|ZP_03057489.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
 gi|118423648|gb|ABK90038.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella novicida U112]
 gi|194322077|gb|EDX19559.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
          Length = 482

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 99/486 (20%), Positives = 176/486 (36%), Gaps = 95/486 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L                    +   LE+ +    Y F    +Y  +T  +     
Sbjct: 32  LFLKFLNDY----------------ENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKDAD 75

Query: 94  -------TNTRNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLL 133
                   +T ++L  ++          F+  D             F     R+     L
Sbjct: 76  GKLDVINADTGDDLLEFVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRVASGHTL 135

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +      +  +        +S +YE+L++  GS+      +F TPR +V     ++  
Sbjct: 136 RDVINEIDELNFNKKE-DLYQLSQVYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV-- 191

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPE 250
                   +P   +T+YDP  GT GFL DA  H+       +  K        G+E  P 
Sbjct: 192 --------NPQAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPL 243

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEK 307
           ++ + V  M++  +        S NI + +TL KD   L    R+   L+NPPFG K   
Sbjct: 244 SYVMGVMNMILHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK--- 293

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                    +   +    P   K +   +LFL H+   L+L    GGR  +V+    LF 
Sbjct: 294 ---------EKATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF- 337

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLIN 426
            +  +    +++ LLEN  +  IV+LP  +F   + + T +         +R G    I 
Sbjct: 338 -QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIF 390

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
             +   +   +  K + I  +   + L+I+ SR+    S +++        I    P ++
Sbjct: 391 YYE--VNPPYKLTKNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVADIKDYDISAKNPNKV 448

Query: 487 SFILDK 492
             I  K
Sbjct: 449 ETIEHK 454


>gi|317132803|ref|YP_004092117.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470782|gb|ADU27386.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 231

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/211 (43%), Positives = 123/211 (58%), Gaps = 7/211 (3%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--FGG 64
           + +  +NFIWK A+ L GDFK +++G VILPFT+L RL+  L PT+  V E +    F  
Sbjct: 4   NISEKSNFIWKIADILRGDFKQSEYGDVILPFTVLCRLDSVLAPTKERVMEIHRQGMFKT 63

Query: 65  SNIDLESFVKVAG-YSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFS 121
               L  F  + G   FYN SE++ + L   + N  +NL  YI  FS+NA+ I E FD  
Sbjct: 64  EYAKLAGFKSITGGLKFYNISEFTFAKLKDDAANIADNLTDYIKGFSENARMILESFDIY 123

Query: 122 STIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S IARL+KA LLY +   F   I+LHPD V +  M  I+E LIR+F    +E A +  TP
Sbjct: 124 SQIARLDKANLLYLVVTRFVDDIDLHPDRVSNNEMGYIFEELIRKFSEMSNETAGEHFTP 183

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           R+V+ L  A+L DPD  L  E PG +  LY+
Sbjct: 184 REVIRLMVAMLFDPDMRLITE-PGFMAKLYE 213


>gi|329729351|gb|EGG65758.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 277

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 108/292 (36%), Gaps = 44/292 (15%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +G  L              K   +    GQE    T+ +    ML+  +  +
Sbjct: 234 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE 275


>gi|148976555|ref|ZP_01813251.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3]
 gi|145964131|gb|EDK29388.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3]
          Length = 542

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/509 (14%), Positives = 179/509 (35%), Gaps = 47/509 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVR----------EKYLAFGGSNIDLESFVKVA 76
             ++F  +I    L + L          +           + ++A      ++ +    A
Sbjct: 29  DASEFK-IITQVFLYKLLNDKFTYETKQIEPKLASSDNWEQAFIALSDDEREMLAMQLPA 87

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF--------------SS 122
             +      +  +     N  +  + +  +  D +    + F                S 
Sbjct: 88  DAAELKQEHFISTLFAKQNEADFAKLFDDTLRDISMLNSDTFSVMTDSGEKVALFESISE 147

Query: 123 TIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   ++      I  + +        T      + I+E+LI+ + S       ++ TP 
Sbjct: 148 YVTVSKRDDFCRAIINSLAEFSFERIFTQKYDFYAVIFEYLIKDYNSNSGGKYAEYYTPH 207

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   +L+  +    ++      + YDP+ G+G  L +  + + +         I  
Sbjct: 208 AVARIMANILVPEE----QQGKISNVSCYDPSAGSGTLLMNVAHAIGESRCSIFTQDISK 263

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
                L        +   +   +E D  R             KD    K+F Y +SNPPF
Sbjct: 264 KSSNLLRLNLILNNLVHSIPNVIEGDTMRHP---------HHKDGAALKQFDYIVSNPPF 314

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
              + +  + +E +          P +P  +   M         +       G+AA+V+ 
Sbjct: 315 KLDFSEIHEELEGKEHKKRFFAGVPKVPAKAKDKMAIYQLFLQHIIHSLKENGKAAVVVP 374

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +  +    A S + +IR+ L++N ++  +V++P+++F  T     +  +        +G 
Sbjct: 375 TGFI---TAKSIDMKIRKHLIDNKMLAGVVSMPSNIFATTGTNVSILFIDAC----NKGD 427

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDYRTFGYRRIKV 480
           V L++A++L T I+    ++ +++D + +QI++++ + +     S ++ Y     +    
Sbjct: 428 VVLVDASNLGTKIKEGKNQKTVLSDLEEQQIIEVFNNTKSVDSLSVVVSYEDIAAKNYSF 487

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSP 509
                    ++ T +  +E        S 
Sbjct: 488 SAGQYFDVKIEYTDITAIEFKQKMEAYSS 516


>gi|309800154|ref|ZP_07694340.1| type I restriction modification system M subunit [Streptococcus
           infantis SK1302]
 gi|308116201|gb|EFO53691.1| type I restriction modification system M subunit [Streptococcus
           infantis SK1302]
          Length = 485

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 167/484 (34%), Gaps = 68/484 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRENDAEFLGISYEGIFPKDKPEYRWSTFKNLGDAQEVYRLMSQEIFPFIKNLKGDTDDT 106

Query: 119 DFS----STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            FS      I ++ K   L K       +      +      +IYE+L+ +     +   
Sbjct: 107 AFSRYMKDAIFQINKPATLQKAIAALDELPTDIKDI-----GDIYEYLLSKLSQAGAN-- 159

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++       
Sbjct: 160 GQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYLDRRKEEW 209

Query: 235 -------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  K     + HG + +     +    M++  +E       +  I    +LS+D  
Sbjct: 210 QTNIDSVKHFHNTMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDSLSQDNE 262

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPF       K +++ +  +G+L        K     +LFL      L+
Sbjct: 263 EADKYTLVLANPPF-------KGSLDYDSTSGDL----LATIKTKKTELLFLALFLRTLK 311

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY 406
                GGRAA+++    LF   +      IR+ ++E+  ++A++++P+ +F     ++T 
Sbjct: 312 P----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVEHHKLDAVISMPSGVFKPYAGVSTA 365

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRE 460
           + I +        G    +   D+     +   KR+ IN++    I+  +        R+
Sbjct: 366 ILIFTK----TGNGGTDKVWFYDMKADGLSLDDKRQPINENDIPDIIQRFHQLEKEVDRK 421

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
               S  +           +          +K      E  +             L  L+
Sbjct: 422 RTDQSFFVPVDEIKENDFDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLAELE 481

Query: 521 PMMQ 524
            +++
Sbjct: 482 ELLK 485


>gi|237740355|ref|ZP_04570836.1| type I restriction modification system M subunit [Fusobacterium sp.
           2_1_31]
 gi|229422372|gb|EEO37419.1| type I restriction modification system M subunit [Fusobacterium sp.
           2_1_31]
          Length = 498

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 87/499 (17%), Positives = 192/499 (38%), Gaps = 60/499 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+   +  +   +E+ L     N D +            ++   L         
Sbjct: 35  LIFMKRLD---QEEQRKEKEQKLGNIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  ++  ++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  VRNEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSG--KNGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++              +K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 258 ------TPKLKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L++    GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLF--GASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +EA++++P+ +F     ++T + I +       +G    +   D+     +   KR  + 
Sbjct: 355 LEAVISMPSGVFKPYAGVSTGILIFTK----TGKGGTDNVWFYDMTADGYSLDDKRNPVE 410

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEAD 501
           ++    I++ + + EN K  +  D   F  ++  V     +S      +    +   E  
Sbjct: 411 ENDIPDIIERFSNLENEKDRKKTDKSFFVPKQEIVDNDYDLSINKYKEIIYEKVEYEEPK 470

Query: 502 ITWRKLSPLHQSFWLDILK 520
           +   KL  L +S    + +
Sbjct: 471 VILEKLEELSKSIDEKLKE 489


>gi|94995116|ref|YP_603214.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548624|gb|ABF38670.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 267

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 112/287 (39%), Gaps = 27/287 (9%)

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDA 311
           +    M++  +        ++++    TL  D  T +   F   L NPP+  KW      
Sbjct: 1   MARMNMMLHGV-----AIENQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGF 55

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           +     +     +G  L   S     FL+H    L+      G  AIVL    LF G A 
Sbjct: 56  L----TDPRFSSYGV-LAPKSKADFAFLLHGFYHLK----NTGTMAIVLPHGVLFRGAA- 105

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E +IR+ LLE   I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+  +
Sbjct: 106 --EGKIRQKLLEQGAIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEF 160

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
              +N    +  + D   ++ILD Y SR+N  KFS +  +         +  P  +    
Sbjct: 161 DKGKN----QNTMTDSHIKKILDAYKSRDNSDKFSYLASFDEIIENDYNLNIPRYVDTFE 216

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           +       E       +          + + M Q +     A+  + 
Sbjct: 217 EVPVKPLPELAKQLSDIDQEIAKTNAKLDQLMKQLVGTTKEAQDELD 263


>gi|291458786|ref|ZP_06598176.1| putative type I restriction-modification system, M subunit
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418703|gb|EFE92422.1| putative type I restriction-modification system, M subunit
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 499

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 159/439 (36%), Gaps = 54/439 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF--VKVAGYSF-YNTSEYSLSTLGST 94
              ++ L+              L +     D       K+ G    ++T     +     
Sbjct: 34  LMFIKDLDDTDNLRAKEAAMLGLPYKSIFADEVEIGDRKIDGNQLKWSTFHDFSAQRMYA 93

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDR 153
             +  +  +I +   +  + +  +     I ++    +L KI      I  +  +     
Sbjct: 94  VVQEWVFPFIKNLHGDKNSAYSKY-MDDAIFKVNTPLMLSKIVDAMDEIYSMMEELHQTD 152

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+ +           F TPR ++ +   ++           P    ++ DP 
Sbjct: 153 IRGDVYEYLLSKIAQSGVN--GQFRTPRHIIRMMVEMM----------DPKPTDSICDPA 200

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLE 265
           CGT GFL  + +++ +      +            + HG +++     +    M+   +E
Sbjct: 201 CGTSGFLVASGDYLREKYKKEVLLDKQNRNHFMNDMFHGYDMDRTMLRIGAMNMMTHGVE 260

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  +  I+   +LS      + +   L+NPPF    + D  + + +          
Sbjct: 261 -------NPFIEYRDSLSDQNPDKEMYSLILANPPFKGNLDADTVSTDLQK--------- 304

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LFL      L++    GGR A ++    LF   + +    IR+ ++EN 
Sbjct: 305 --VCKTKKTELLFLALFVRMLKI----GGRCACIVPDGVLF--GSSNAHKAIRKEIVENQ 356

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            +EA++++P+ +F     ++T + I +          V   + T    S+ +   KR  I
Sbjct: 357 RLEAVISMPSGVFKPYAGVSTGILIFTKT-GHGGTDDVWFYDMTADGFSLDD---KRTEI 412

Query: 445 NDDQRRQILDIYVSRENGK 463
            D+  + I+  + + E  K
Sbjct: 413 KDNDIQDIISRFKNLEAEK 431


>gi|313675493|ref|YP_004053489.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126]
 gi|312942191|gb|ADR21381.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126]
          Length = 524

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/581 (15%), Positives = 187/581 (32%), Gaps = 120/581 (20%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   S  + IW+       A  L    +   +         LRR++      R  + E+
Sbjct: 3   TGELKSQVDKIWESFWTGGIANPLT-VIEQFTY------LLFLRRMDE-----RQQLEER 50

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                G  I+   +            E   S   + +     + +  +       +FE  
Sbjct: 51  KANMIGEPIENPIYSDEHK-------ELRWSHFSNVDPNTMFDLFTKTTEKRPLTVFEHM 103

Query: 119 D------------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                               +    LL  + +    I++           ++YE+++ + 
Sbjct: 104 KQIGASVGVFGEFMKGATFMIPTPKLLDTVVQMIKKIQMD----DRDTKGDLYEYMLSKV 159

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S        F TPR ++ +   ++           P    T+ DP+CGT GFL  A  +
Sbjct: 160 ASAG--QNGQFRTPRHIIRMMVDMV----------EPNETDTICDPSCGTAGFLVAAGEY 207

Query: 227 VADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + D             H       G E +     +    + +  +E +P+     ++ +G
Sbjct: 208 LHDMHPDWFNDKKFREHYNKEMFTGMEFDSTMLRIGAMNLQLHGIE-NPQLIGVDSLSEG 266

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           ++  K     ++F   L+NPPF  K   D D V+    N         + K     +LFL
Sbjct: 267 NSNIK-----EKFSLVLANPPF--KGSLDYDGVDDALLN---------IVKTKKTELLFL 310

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   L+     GGR A+++    LF   +     EIR+ ++E + ++A++++P+ +F 
Sbjct: 311 ALMLRTLKT----GGRCAVIIPDGVLF--GSSKAHKEIRKEIIEKNKLDAVISMPSGVFK 364

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLIN--------------------ATDLWTSIRNEG 438
               ++T +   +   T      V   +                        +T+     
Sbjct: 365 PYAGVSTAILFFTKTGTGG-TDNVWFYDMKADGYSLDDKRSLLVNTEEFEQCFTAPEKAV 423

Query: 439 KKRRIINDDQRRQIL---DIY------------VSRENGKFSRMLDYRTFGYRRIKVLRP 483
           +K  I +      IL   D                R+    S ++ +         +   
Sbjct: 424 EKASIRDKCDIADILLRWDTVNPMRHEKEASPEKDRKRTDQSFLVPFEEIKANDWDLSIN 483

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                  ++      +  I   +     ++  L++LK ++ 
Sbjct: 484 RYKEIEYEEVEYDAPKDIIADIEQLDADRTKALNLLKEVLG 524


>gi|158520840|ref|YP_001528710.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509666|gb|ABW66633.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 493

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 166/510 (32%), Gaps = 77/510 (15%)

Query: 38  FTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +        LE    +    +L +     D E         F N   +     
Sbjct: 34  MFFLKIFDDREAELELLEDDYQSPLPDHLRWRAWAKDPEGMTGEELADFVNAQLFPHLKD 93

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                       I         +  +  F      ++   L+ ++      I+ +     
Sbjct: 94  KLK---------IQGLQGKRAMVIRNV-FEDAYNYMKSGTLMRQVINKICEIDFNTQK-D 142

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                +IYE +++   S  +  A +F TPR V       +           P +  T+ D
Sbjct: 143 RHTFGHIYEQILKDLQSAGN--AGEFYTPRAVTQFIVNRV----------DPKLSETVLD 190

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFLT  + H  D          +      G E +   H +CV  M++  +    
Sbjct: 191 PACGTGGFLTGTIKHKRDHYVKTTEDEKILQASISGVEKKALPHMLCVTNMILNGV---- 246

Query: 269 RRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D   +I+  +T     KD     R +  ++NPPFG     ++D +E            
Sbjct: 247 --DTPVSIRHDNTLSRPYKDYGEKDRVNVIVTNPPFGG---MEEDGIENNF--------- 292

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL  +   L+     GGRAAIVL    LF       ++ ++  LL   
Sbjct: 293 PATFRTRETADLFLALIIKLLK----KGGRAAIVLPDGFLF---GEGMKTRLKETLLAEC 345

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRNEGKKRR 442
            +  IV LP  +F   T I T L   +     E+      I   +       ++  K + 
Sbjct: 346 NLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTEQ------IWYYEHPYPEGAKSYNKTKP 399

Query: 443 IINDDQRRQI------LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           ++ ++   +I         + +R+    +  +       R   +          +     
Sbjct: 400 MLFEEFEPEIKWWGSEAKNFKTRKETAQAWKVSAEDIVARNYNLDIKNPHVAEQEDRDPQ 459

Query: 497 RLEADI--TWRKLSPLHQSFWLDILKPMMQ 524
           +L A      ++++ L       +   +  
Sbjct: 460 KLLAQYQAQQKEIADLQDQLKAILADALTN 489


>gi|56708241|ref|YP_170137.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670712|ref|YP_667269.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56604733|emb|CAG45804.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321045|emb|CAL09187.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 488

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 177/476 (37%), Gaps = 75/476 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNT 96
             L+ L         ++  + +      +  E +     ++ +   + +   L   + +T
Sbjct: 38  LFLKFLNDY--ENEKSLEAELIGEDYIFVLDEKY----RWNIWAAPKGADGKLDVINADT 91

Query: 97  RNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLLYKICKNFSGI 143
            ++L   +          F+  D             F     R+     L  +      +
Sbjct: 92  GDDLLEIVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTLRDVINEIDEL 151

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             +        +S IYE+L++  GS+      +F TPR +V     ++          +P
Sbjct: 152 NFNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NP 199

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGML 260
              +T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M+
Sbjct: 200 QAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMI 259

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +        S NI + +TL KD   L    R+   L+NPPFG K            +
Sbjct: 260 LHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK------------E 300

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +    P   K +   +LFL H+   L+L    GGR  +V+    LF  +  +    +
Sbjct: 301 KATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNV 352

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ LLEN  +  IV+LP  +F   + + T +         +R G    I   +   +   
Sbjct: 353 KKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIFYYE--VNPPY 404

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +  K + I  +   + L+I+ SR+    S +++        I    P ++  I  K
Sbjct: 405 KLTKNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTDIKDYDISAKNPNKVETIEHK 460


>gi|261868701|ref|YP_003256623.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261414033|gb|ACX83404.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 360

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 111/351 (31%), Gaps = 70/351 (19%)

Query: 35  ILPFTLLRRLECALEPTRSAVREK--------YLAFGGSNIDLE-----------SFVKV 75
           +L    L+ +  +    +  +R +        YL     N D E                
Sbjct: 1   MLGLIFLKYISDSFTAQQDKIRVELSNPENPLYLDRTFYNSDEEYQEALDFELENRDYYT 60

Query: 76  AGYSFYNTSEYSLSTLGSTNTRN-------------------NLESYIASFSDNAKAIFE 116
           A   F+  +      L   +  N                   +    I   ++  K + +
Sbjct: 61  ADNVFWVPASARWQALQEVSILNTGAELPWGGKFVGVARLIDDAFDAIEKDNEKLKGVLQ 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEG 173
                +      +  ++     NF+    + + V      ++ ++YE+ + RF     + 
Sbjct: 121 RISGYAVNEDTLRGLIMLFSDTNFTAPSYNGEPVHLGAKDILGHVYEYFLGRFAQAEGKR 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TP+ +V L   +L           P     +YDP  G+GGF       +    +H
Sbjct: 181 GGQYFTPKSIVSLIVEML----------EPYKG-RVYDPAIGSGGFFVQTERFIT---AH 226

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +GQE  P T  +    M IR ++ D             + ++     K+  
Sbjct: 227 QGNINQASIYGQEFNPTTWKLAAMNMAIRGIDYD------FGKHNADSFAQPQHLDKKMD 280

Query: 294 YCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           + ++NPPF    W  +  A        +  R+  G P   + +  +L H+ 
Sbjct: 281 FIMANPPFNISDWWSESLA--------DDPRWAYGTPPKGNANFAWLQHMI 323


>gi|187931566|ref|YP_001891550.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712475|gb|ACD30772.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 482

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 177/476 (37%), Gaps = 75/476 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNT 96
             L+ L         ++  + +      +  E +     ++ +   + +   L   + +T
Sbjct: 32  LFLKFLNDY--ENEKSLEAELIGEDYIFVLDEKY----RWNIWAAPKGADGKLDVINADT 85

Query: 97  RNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLLYKICKNFSGI 143
            ++L   +          F+  D             F     R+     L  +      +
Sbjct: 86  GDDLLEIVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTLRDVINEIDEL 145

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             +        +S IYE+L++  GS+      +F TPR +V     ++          +P
Sbjct: 146 NFNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGML 260
              +T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M+
Sbjct: 194 QAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMI 253

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +        S NI + +TL KD   L    R+   L+NPPFG K            +
Sbjct: 254 LHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGDK------------E 294

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +    P   K +   +LFL H+   L+L    GGR  +V+    LF  +  +    +
Sbjct: 295 KATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNV 346

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ LLEN  +  IV+LP  +F   + + T +         +R G    I   +   +   
Sbjct: 347 KKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIFYYE--VNPPY 398

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +  K + I  +   + L+I+ SR+    S +++        I    P ++  I  K
Sbjct: 399 KLTKNKPIQFEHFAEFLEIWQSRKLTDNSWIVNVADIKDYDISAKNPNKVETIEHK 454


>gi|15839312|ref|NP_300000.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9187843|gb|AAF85759.1|AE004078_11 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 424

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           M+   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+
Sbjct: 1   MNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFY 60

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVS 458
            T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   +      +ILD+Y+ 
Sbjct: 61  NTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLG 120

Query: 459 R-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL--------SP 509
           + +    S+  D + FGY ++ + RPLR+   L    +  L        L          
Sbjct: 121 QTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGE 180

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
              + +      +   +      E    +S   NEA   +           ++A   +  
Sbjct: 181 ALYTEFAKRKPAIEAWLKGEDENEDDDSDSGDDNEALAARKAVPTKRRKTLLDASTWQRD 240

Query: 570 RA 571
           +A
Sbjct: 241 KA 242



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 74/191 (38%), Gaps = 37/191 (19%)

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
               +++ +   Q +    + +     S      K    + S S   A   A   +D  A
Sbjct: 240 DKALMEVARRAQQALGRAVFDDHNAFCSGFDAVCKAQDERLSASEKKAIYKAVSWRDAAA 299

Query: 572 DPVTDVNG---------------------------EWIPDTNLTEYENVPYLE--SIQDY 602
            PV                                E+ PD+ L + E VP  E   I  +
Sbjct: 300 LPVIAKRSKLKAGDYFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQEPGGIDAF 359

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           FVREV PH PDA+I          +  +VGYEI+F R+FY+  P R L DI A++  +E 
Sbjct: 360 FVREVLPHAPDAWIA--------TDKTQVGYEISFARYFYKPVPLRTLADIRADILALEQ 411

Query: 663 QIATLLEEMAT 673
           Q   LL ++  
Sbjct: 412 QTEGLLHKIVG 422


>gi|224457359|ref|ZP_03665832.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159467|gb|ADA78858.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 482

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 177/476 (37%), Gaps = 75/476 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNT 96
             L+ L         ++  + +      +  E +     ++ +   + +   L   + +T
Sbjct: 32  LFLKFLNDY--ENEKSLEAELIGEDYIFVLDEKY----RWNIWAAPKGADGKLDVINADT 85

Query: 97  RNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLLYKICKNFSGI 143
            ++L   +          F+  D             F     R+     L  +      +
Sbjct: 86  GDDLLEIVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTLRDVINEIDEL 145

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             +        +S IYE+L++  GS+      +F TPR +V     ++          +P
Sbjct: 146 NFNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGML 260
              +T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M+
Sbjct: 194 QAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMI 253

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +        S NI + +TL KD   L    R+   L+NPPFG K            +
Sbjct: 254 LHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK------------E 294

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +    P   K +   +LFL H+   L+L    GGR  +V+    LF  +  +    +
Sbjct: 295 KATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNV 346

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ LLEN  +  IV+LP  +F   + + T +         +R G    I   +   +   
Sbjct: 347 KKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIFYYE--VNPPY 398

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +  K + I  +   + L+I+ SR+    S +++        I    P ++  I  K
Sbjct: 399 KLTKNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTDIKDYDISAKNPNKVETIEHK 454


>gi|294850236|ref|ZP_06790971.1| type I restriction-modification system [Staphylococcus aureus
           A9754]
 gi|294822852|gb|EFG39286.1| type I restriction-modification system [Staphylococcus aureus
           A9754]
          Length = 346

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 49/306 (16%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K   +    GQE    T+ +    ML+  +  +     + +
Sbjct: 295 SGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFD 339

Query: 276 IQQGST 281
           I+   T
Sbjct: 340 IRNDDT 345


>gi|311742871|ref|ZP_07716679.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM
           15272]
 gi|311313551|gb|EFQ83460.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM
           15272]
          Length = 484

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 172/505 (34%), Gaps = 67/505 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     +RRL+         + E      G  ++   F+    +  +   + +   +   
Sbjct: 32  ITYLLFIRRLDDV-----QTLAESKARVTGGEVENPVFLPGQAHLRWGQFKNTSPEVMHR 86

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
              +++  ++    D++               +    LL K+      I +         
Sbjct: 87  TIADDVFPFLRGLGDSSTYS---EHMKDARFTIPTPALLSKVVDMLDDIPM----ADRDT 139

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  S        F TPR ++ L   +           +P     + DP C
Sbjct: 140 NGDLYEYLLSKIASAGVN--GQFRTPRHIIDLMVRMT----------APQPRDEVCDPAC 187

Query: 215 GTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           GTGGFL  A  +V +         +  +     + HG + +     +    ML+  +ES 
Sbjct: 188 GTGGFLVAASEYVRETHADALLDANQRQHFHHSMFHGYDFDSTMLRIGSMNMLMHGVES- 246

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+   +LS+      +++   L+NPPF          ++ E    +L R   
Sbjct: 247 ------PDIRYRDSLSEGAAGDTEKYTLILANPPFAGS-------LDYEATAKDLQR--- 290

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF              GGRAA+V+    LF   +     E+RR ++E   
Sbjct: 291 -VVKTKKTELLF----LALFLKLLKPGGRAAVVVPDGVLF--GSSKAHKELRRIMVEEQK 343

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++A+V LP+ +F     ++T +   +        G    +   D+     +   KR  + 
Sbjct: 344 LDAVVKLPSGVFRPYAGVSTAILFFTK----TNSGGTDDVWFYDVRADGFSLDDKRNSVE 399

Query: 446 DDQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
            D    +L  + +      R   + S ++       +   +        + D+       
Sbjct: 400 ADDLPDVLTRWQNLAEEDDRARTEQSFLVPKADIVAQDYDLSLNRHKEIVHDEIEHRAPL 459

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQ 524
             I   ++     +  L  LK M+ 
Sbjct: 460 EIIADIEILEDEIARGLSELKAMLS 484


>gi|254457532|ref|ZP_05070960.1| type I restriction-modification system, M subunit
           [Campylobacterales bacterium GD 1]
 gi|207086324|gb|EDZ63608.1| type I restriction-modification system, M subunit
           [Campylobacterales bacterium GD 1]
          Length = 484

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/498 (15%), Positives = 167/498 (33%), Gaps = 60/498 (12%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-ST 94
             L+ L+   +  ++A     + Y            +              +LS      
Sbjct: 33  LFLKYLDDLEKDKKTAAELTGKTYTDIIAPEYQWSVWATPKDKDGKLDHHKALSGDDLKD 92

Query: 95  NTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
              + L  Y+  F      +D  +    +  FS    R++    L ++      +     
Sbjct: 93  FVDHKLFPYLKKFKADAESADTIEYKIGEI-FSELKNRIQSGYNLREVINRIDELRFR-T 150

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 MS++YE  I+  G+       ++ TPR ++     ++          +P +   
Sbjct: 151 HAEKHEMSHLYEDKIKNMGN-AGRNGGEYYTPRALIKTIVKVV----------APQIGDK 199

Query: 209 LYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +YD   G+ GFL +A  ++    +      +I      +G+E +   + +    M++  +
Sbjct: 200 IYDGAVGSAGFLVEAFEYLKHSKNLTTADTEILQKKTFYGKEKKSLAYIIGTMNMILHGV 259

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E+      +   +       D+    R+   L+NPPFG K            +  E+ + 
Sbjct: 260 EAPNIIHTNTLAEN----LADIQDKDRYDVILANPPFGGK------------ERAEVQQN 303

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P   K  + + LF+ H    L+     GG+A IV+ ++ L N    S    +R+ LLEN
Sbjct: 304 FP--IKTGETASLFIQHFVKILKA----GGKAGIVIKNTFLSNTDNAS--VSLRKLLLEN 355

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  ++ LP   F    + T +                 +    L  ++     K   +
Sbjct: 356 CNLHTVLDLPGGTFTGAGVKTVVLFFEKGVPTRN------VWFYQL--NLDRNLGKTNPL 407

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           N+    + +++  +   G+ S  +D  +       +      +   +       E     
Sbjct: 408 NEKDLAEFVELQKTFATGENSWSVDVASIDQNTYDLSAK-NPNKKEEAALRKPQEILEEM 466

Query: 505 RKLSPLHQSFWLDILKPM 522
           + L          IL+ +
Sbjct: 467 KALDEESAEILASILEML 484


>gi|254370728|ref|ZP_04986733.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875062|ref|ZP_05247772.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151568971|gb|EDN34625.1| hypothetical protein FTBG_00529 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841061|gb|EET19497.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 487

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 177/476 (37%), Gaps = 75/476 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNT 96
             L+ L         ++  + +      +  E +     ++ +   + +   L   + +T
Sbjct: 37  LFLKFLNDY--ENEKSLEAELIGEDYIFVLDEKY----RWNIWAAPKGADGKLDVINADT 90

Query: 97  RNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLLYKICKNFSGI 143
            ++L   +          F+  D             F     R+     L  +      +
Sbjct: 91  GDDLLEIVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTLRDVINEIDEL 150

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             +        +S IYE+L++  GS+      +F TPR +V     ++          +P
Sbjct: 151 NFNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NP 198

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGML 260
              +T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M+
Sbjct: 199 QAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMI 258

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +        S NI + +TL KD   L    R+   L+NPPFG K            +
Sbjct: 259 LHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK------------E 299

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +    P   K +   +LFL H+   L+L    GGR  +V+    LF  +  +    +
Sbjct: 300 KATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNV 351

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ LLEN  +  IV+LP  +F   + + T +         +R G    I   +   +   
Sbjct: 352 KKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIFYYE--VNPPY 403

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +  K + I  +   + L+I+ SR+    S +++        I    P ++  I  K
Sbjct: 404 KLTKNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTDIKDYDISAKNPNKVETIEHK 459


>gi|332829957|gb|EGK02585.1| hypothetical protein HMPREF9455_00835 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 478

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/494 (16%), Positives = 182/494 (36%), Gaps = 57/494 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ ++   +     +++ Y++         ++   A  S   T E  L  + ST+  
Sbjct: 34  MLFLKIIDDK-DKELEILKDDYISVIPEKFQWRNW---AANSEGITGEELLGFIDSTSHH 89

Query: 98  N-NLESYIASFSDNA---KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           +  L + +   S      +A      F  +   ++    + K+    + I+ +       
Sbjct: 90  DLGLFATLRCLSSKTNPKRAAIVKEVFDGSNNYMKSGFEMRKVINKLNEIDFNRSD-DKH 148

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  +IYE +++      ++   ++ TPR +  L T +            P +   + DP 
Sbjct: 149 IFGDIYESILQELRDAGNK--GEYYTPRAITQLMTQMT----------DPKLGEKILDPA 196

Query: 214 CGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            GTGGFLT A+ H  D       ++        G EL+P  + + +  +++  ++    +
Sbjct: 197 AGTGGFLTAAIEHKRDHYVKTVDNEATLQSTITGWELKPVAYVLGLTNLILHGIDIPDYQ 256

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            +    ++ +++ K      +    L+NPPFG       D VE            P + +
Sbjct: 257 YIDSLKKEYNSIDK----KDQVDVILANPPFGASIA---DGVETNF---------PAMYR 300

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + + LF++ +   L+      GRAAIVL    +      S    IR  LL +  +  I
Sbjct: 301 CRESADLFVILMLQMLKP----TGRAAIVLPDGSITGEGVKS---RIREKLLTDCNLHTI 353

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQR 449
           V LP   FF   ++T L               + I   +      +    K + I  ++ 
Sbjct: 354 VRLPQSTFFPATVSTNLLFFEKGAP------TKEIWYYEHRLPEGQKSYSKTKPIKFEEF 407

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           + +++ + +R   + +  +  +      + +      + + +   L+  +A +  ++   
Sbjct: 408 KPLIEWWNNRVENEVAWKVKVKDLNNWDLDI---KNSNTVTEDITLSTTDAILKLKESIN 464

Query: 510 LHQSFWLDILKPMM 523
              S   ++   + 
Sbjct: 465 KSNSIIDELENLLK 478


>gi|197334342|ref|YP_002156837.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
 gi|197315832|gb|ACH65279.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
          Length = 485

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 154/450 (34%), Gaps = 64/450 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L+  LE +R+   E      G  ID +            T E     L   +  
Sbjct: 32  MLFLKYLDD-LEHSRALEAEMLGEQYGYIIDRDFRWSTWAAPKKATGELDDDALTGEDLM 90

Query: 96  --TRNNLESYIASF-----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                 L  Y+  F     S N         F     +++    L    +    +     
Sbjct: 91  EFVDGELFPYLKGFKQRAESPNTIEYKIGEIFGEIKNKIQSGYSLRDALEKVDNLRFRSQ 150

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +S++YE  I+  G+       ++ TPR ++     ++           P + +T
Sbjct: 151 EEK-HELSHLYETKIKNMGN-AGRNGGEYYTPRPLIRAMIDVI----------QPKIGQT 198

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVAGML 260
           +YD   G+ GFL +A +++   G+  K               + +E +   + + +  M+
Sbjct: 199 IYDGAAGSAGFLCEAFDYLRKGGAEKKKLTTAELDTLQKRTFYAKEKKSLAYVIAIMNMI 258

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +E+      +   +      KDL   +R+   L+NPPFG K  K+            
Sbjct: 259 LHGIEAPNVVHTNTLAEN----IKDLQDSQRYDIVLANPPFGGKERKEVQ---------- 304

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K  + + LFL H    L      GG+AAIV+ ++ L N  A +    +R+ 
Sbjct: 305 ----MNFPIKTGETAFLFLQHFIKTLRP----GGQAAIVIKNTFLSNSDATA----VRKE 352

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL+   +  ++  P   F    + T +   +  +   +          +L         K
Sbjct: 353 LLQTCNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTTKT------WFYEL--DPGRSLGK 404

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              +ND    + + +  ++ +   S  +  
Sbjct: 405 TNPLNDKDLAEFVTLQKTKADSDKSWSVTT 434


>gi|254779131|ref|YP_003057236.1| Type I restriction enzyme M protein [Helicobacter pylori B38]
 gi|254001042|emb|CAX28986.1| Type I restriction enzyme M protein [Helicobacter pylori B38]
          Length = 543

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/507 (15%), Positives = 172/507 (33%), Gaps = 46/507 (9%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + +    +  +    + +L      +   S+ ++  Y F      +   L      N + 
Sbjct: 63  KTIRDYKDFKKEEKEDFFLTLSDKKLPKLSYDELLSYLFEKHFNDNDLHLKLDAIFNRIS 122

Query: 102 SYIASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDT 149
           S  A             A+FE      +    R      L    KNF+     + L    
Sbjct: 123 SNNAELFNTKSTDKTTIALFESVSPYINEESKRANFTRSLLDKLKNFNFKQAFLNLQNQQ 182

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D   + I+E+L++ + +       ++ TP  +  +   LL++         P     +
Sbjct: 183 GYD-FFAPIFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLINE--------PTQSVKI 233

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ GTG  L    + +               + Q++  ++  +    +++  L    R
Sbjct: 234 YDPSAGTGTLLMALAHQIGTT--------SCTLYAQDISQKSLRMLKLNLILNDLTHSLR 285

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             +  N       SKD     +  Y +SNPPF   +  +   + +   +  LG   P +P
Sbjct: 286 YAIEGNTLINPYHSKDYKG--KMDYIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIP 341

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     M              +  G+ AI++ +  +        E++I + L++  L+  
Sbjct: 342 KNDKSKMPIYTLFFQHCLNMLSHKGKGAIIVPTGFISAKS--GIENKIVKHLVDERLVYG 399

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ +P+ +F  T     +       + +   +V LI+A+ L         K+  +     
Sbjct: 400 VICMPSQVFANTGTNVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDM 456

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR--- 505
             IL+ + ++ +   F  ++ +     +   +              +++ E +   +   
Sbjct: 457 DLILETFQNKTKKADFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYS 516

Query: 506 ----KLSPLHQSFWLDILKPMMQQIYP 528
                L    QS   +IL+ +    Y 
Sbjct: 517 SELTSLFDESQSLQQEILETLGNLNYD 543


>gi|15645091|ref|NP_207261.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313567|gb|AAD07525.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 487

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 161/480 (33%), Gaps = 57/480 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDL------------ 69
              ++  +I    L + L    E        +   + Y  F     +             
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNKEEKEEFFITLTDKRLPK 90

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNAKAIFEDF--DFS 121
            ++  +  Y F      +   L      N + S  A             A+FE      +
Sbjct: 91  LAYDDLLNYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDKTTIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               R     +L    K F+     + L      D   + I+E+L++ + +       ++
Sbjct: 151 EESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYD-FFAPIFEYLLKDYNNAGGGKYAEY 209

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +  +   LL++         P     +YDP+ GTG  L    + +          
Sbjct: 210 YTPLSIASIIAKLLINE--------PTRNVKIYDPSAGTGTLLMALAHQIG--------T 253

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                + Q++  ++  +    +++  L    R  +  N       SKD     +  Y +S
Sbjct: 254 DSCTLYAQDISQKSLRMLKLNLILNDLTHSLRNAIEGNTLTNPYHSKDFKG--KMDYIVS 311

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF   +  +   + +   +  LG   P +PK +   M              +  G+ A
Sbjct: 312 NPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNNKSKMPIYTLFFQHCLNMLSNKGKGA 369

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I++ +  +        E++I R L++  L+  +V +P+ +F  T     +       + +
Sbjct: 370 IIVPTGFISAKS--GVENKIIRHLVDERLVYGVVCMPSQVFANTGTNVSIIFFQKTPSAK 427

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
              +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     +
Sbjct: 428 ---EVVLIDASKLGEEYTENKNKKTRLRPSDIDLILETFQNKTKKSDFCALVSFDEITEK 484


>gi|134302158|ref|YP_001122127.1| N-6 DNA methylase family [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049935|gb|ABO47006.1| N-6 DNA Methylase family [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 482

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/476 (20%), Positives = 177/476 (37%), Gaps = 75/476 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNT 96
             L+ L         ++  + +      +  E +     ++ +   + +   L   + +T
Sbjct: 32  LFLKFLNDY--ENEKSLEAELIGEDYIFVLDEKY----RWNIWAAPKGADGKLDVINADT 85

Query: 97  RNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLLYKICKNFSGI 143
            ++L   +          F+  D             F     R+     L  +      +
Sbjct: 86  GDDLLEIVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTLRDVINEIDEL 145

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             +        +S IYE+L++  GS+      +F TPR +V     ++          +P
Sbjct: 146 NFNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGML 260
              +T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M+
Sbjct: 194 QAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMI 253

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +        S NI + +TL KD   L    R+   L+NPPFG K            +
Sbjct: 254 LHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK------------E 294

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +    P   K +   +LFL H+   L+L    GGR  +V+    LF  +  +    +
Sbjct: 295 KATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNV 346

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ LLEN  +  IV+LP  +F   + + T +         +R G    I   +   +   
Sbjct: 347 KKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIFYYE--VNPPY 398

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +  K + I  +   + L+I+ SR+    S +++        I    P ++  I  K
Sbjct: 399 KLTKNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVADIKDYDISAKNPNKVETIEHK 454


>gi|308182610|ref|YP_003926737.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4]
 gi|308064795|gb|ADO06687.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4]
          Length = 543

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/480 (15%), Positives = 165/480 (34%), Gaps = 39/480 (8%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           +    +  +    + ++    + +   ++ ++  Y F      +   L      N + S 
Sbjct: 65  IRDYKDFKKEEREDFFITLSDNKLPKLAYDELLNYLFEKHFNDNDLHLKLDAIFNRISSN 124

Query: 104 IASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDTVP 151
            A             A+FE      +    R      L    KNF+     + L      
Sbjct: 125 NAELFNTTSTDKTTIALFESVSQYVNEESKRANFTRALLDKLKNFNFKQAFLNLQNQQGY 184

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D   + I+E+LI+ + +       ++ TP  +  +   LL+          P     +YD
Sbjct: 185 D-FFAPIFEYLIKDYNNAGGGKYAEYYTPLSIASIIAKLLV--------SEPTQSVKIYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ GTG  L    + +               + Q++  ++  +    +++  L    +  
Sbjct: 236 PSAGTGTLLMALAHQIG--------TDSCTLYAQDISQKSLRMLKLNLILNDLTHSLKYA 287

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +  N       SK+     +  + +SNPPF   +  +   + +   +  LG   P +PK 
Sbjct: 288 IEGNTLTNPYHSKEFKG--KMDFIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKN 343

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               M              +  G+ AIV+ +  +        E++I R L++  L+  +V
Sbjct: 344 DKSKMPIYTLFFQHCLNMLSDKGKGAIVVPTGFISAKS--GIENKIVRHLVDEKLVYGVV 401

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P+ +F  T     +       + +   +V LI+A+ L         K+  +       
Sbjct: 402 CMPSQVFANTGTNVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRPSDMDL 458

Query: 452 ILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           IL+ + ++ +   F  ++ +     +   +      +       +++ E +   ++ S  
Sbjct: 459 ILETFQNKTKKADFCTLVSFDEIIEKNYSLNPGQYFTIEDTSETISQAEFENLMQQYSSE 518


>gi|208779806|ref|ZP_03247150.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
 gi|208744261|gb|EDZ90561.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
          Length = 461

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/486 (20%), Positives = 176/486 (36%), Gaps = 95/486 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L                    +   LE+ +    Y F    +Y  +T  +     
Sbjct: 11  LFLKFLNDY----------------ENEKSLETELIGEEYIFVLDEKYRWNTWAAPKDAD 54

Query: 94  -------TNTRNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLL 133
                   +T ++L  ++          F+  D             F     R+     L
Sbjct: 55  GKLDVINADTGDDLLEFVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLDNRIASGHTL 114

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +      +  +        +S +YE+L++  GS+      +F TPR +V     ++  
Sbjct: 115 RDVINEIDELNFNKKE-DLYQLSQVYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV-- 170

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPE 250
                   +P   +T+YDP  GT GFL DA  H+       +  K        G+E  P 
Sbjct: 171 --------NPQAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPL 222

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEK 307
           ++ + V  M++  +        S NI + +TL KD   L    R+   L+NPPFG K   
Sbjct: 223 SYVMGVMNMILHGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK--- 272

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                    +   +    P   K +   +LFL H+   L+L    GGR  +V+    LF 
Sbjct: 273 ---------EKATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF- 316

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLIN 426
            +  +    +++ LLEN  +  IV+LP  +F   + + T +         +R G    I 
Sbjct: 317 -QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIF 369

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
             +   +   +  K + I  +   + L+I+ SR+    S +++        I    P ++
Sbjct: 370 YYE--VNPPYKLTKNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVADIKDYDISAKNPNKV 427

Query: 487 SFILDK 492
             I  K
Sbjct: 428 ETIEHK 433


>gi|189424479|ref|YP_001951656.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420738|gb|ACD95136.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 477

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 163/436 (37%), Gaps = 59/436 (13%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIAS-----------FSD 109
               + +LE   +       +  ++   +      T + L+ +I              + 
Sbjct: 40  LDDKDKELEILQEAYASPIPSAVQWRAWAADAEGMTGDELKEFIDLKLFPALKNLDISTG 99

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +A+     F  T   ++   ++ ++    + I+ +       +  +IYE ++R   S 
Sbjct: 100 NKRALIIREIFEGTNNYMKNGTVIRQVLNELNQIDFNSSD-DRHIFGDIYETILRDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +    +F TPR +    TA++          +P +   + DP CGTGGFLT A+ ++  
Sbjct: 159 GN--YGEFYTPRALTEFMTAII----------NPRLGEKVLDPACGTGGFLTCAIENIRR 206

Query: 230 C---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKD 285
                           HG E +P    + V  M++  +E  +     S N +  S  +KD
Sbjct: 207 QDVKNVEDLQTLQSTIHGMEFKPLPFMLSVTNMILHDIEVPNVDYTDSLNREYTSIGAKD 266

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                R    L+NPPFG       D VE            P   + ++ + LFL+ +   
Sbjct: 267 -----RVDVILANPPFGASVT---DGVETNF---------PLNYRTTESADLFLLLMIRY 309

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+     GGRAAIVL    L        +  IR+  LE   +  IV LP  +F    ++A
Sbjct: 310 LK----DGGRAAIVLPDGSL---TGDGVKQRIRQHWLEGCNLHTIVRLPNSVFQPYASVA 362

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T L   +  +  +            L   +++  K + I + +   ++ + + +R+    
Sbjct: 363 TNLLFFTKGEPTKE----IWYWEHQLPEGVKSYSKTKPIQSAE-FNRLKEWWNNRQESDQ 417

Query: 465 SRMLDYRTFGYRRIKV 480
           +  +   T       +
Sbjct: 418 AWRVSIDTLTANSYNL 433


>gi|164687376|ref|ZP_02211404.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM
           16795]
 gi|164603800|gb|EDQ97265.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM
           16795]
          Length = 486

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 189/489 (38%), Gaps = 74/489 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+       S      + F G       F +   +  +N  +    T+      
Sbjct: 35  LLFIKGLDDNETQKESDAIFLGIPFEGI------FPQDKQHLRWNKFKNEEPTVMYDIMA 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   + ++ +  +     I ++  A +L KI      +E+      D    +
Sbjct: 89  NEVFPFIKNLHGDGESAYSKY-MGDAIFKIPTALMLAKIIDGIDKLEIDNK---DDNKGD 144

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +  +L+           P    T+ DP  G+ 
Sbjct: 145 LYEYLLSKVATAGTN--GQFRTPRHIIDMIVSLM----------KPTPQDTIVDPAAGSA 192

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +   +   L       + +G +++     +    M++  ++     
Sbjct: 193 GFLVSSQQYLRDNHADLFLVQSLKEHFNNDMFYGFDMDRTMLRIGAMNMMLHGVD----- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF       K +++ E    +L +    + K
Sbjct: 248 --NPNIEYKDSLSEVNTDSEKYSLVLANPPF-------KGSLDYEAVGADLLK----VTK 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IR+ ++EN+ +EAI
Sbjct: 295 TKKTELLFLALFLRILK----KGGRCASIVPDGVLF--GSTKGHKDIRKEIVENNKLEAI 348

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR  + ++  
Sbjct: 349 ISMPSGVFKPYAGVSTAIIIFTK----TGNGGTDKVWFYDMKADGYSLDDKRNPVEENDI 404

Query: 450 RQILDIYVS------RENGKFSRMLDYRT----------FGYRRIKVLRPLRMSFILDKT 493
             I++ + +      R+  + S  +D               Y+ I+    +  +  +   
Sbjct: 405 PDIIERFDNLDKEVDRKRTEQSFFVDKSEIVENGYDLSINKYKEIEYEEVVYDAPEVILG 464

Query: 494 GLARLEADI 502
            +  LE +I
Sbjct: 465 RVKELEDEI 473


>gi|78188778|ref|YP_379116.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Chlorobium chlorochromatii CaD3]
 gi|78170977|gb|ABB28073.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Chlorobium chlorochromatii CaD3]
          Length = 486

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 166/458 (36%), Gaps = 60/458 (13%)

Query: 39  TLLRRLECALEPTRSAVR-----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
             LR L+   +    A        +++       +  +  K A     + S  + + L  
Sbjct: 33  LFLRYLDELEKEKADAAALQGKTYQFIIDKVFRWNYWAMPKTADGKLDHHSVMTGTDLVQ 92

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHP 147
                 L  Y+ASF   A    +  ++      S    +++    L +I +    +    
Sbjct: 93  FVDLQ-LFPYLASFKLKAIENPKSIEYKIGEIYSELKNKVKSGYNLREIIEMIDTLPFGT 151

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S++YE  I+  G+        + TPR ++     ++          +P +  
Sbjct: 152 SK-DKHELSHLYETKIKNMGN-AGRNGGQYYTPRPLIRAIINVV----------NPQIGE 199

Query: 208 TLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +YD  CG+ GFL +A +++        ++ K       +G+E +   + + V  M++  
Sbjct: 200 KVYDAACGSAGFLCEAYSYMYERMEKTTTNLKTLQENTFYGKEKKNLAYIIGVMNMILHG 259

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+      +   +      +D+    R+H  L+NPPFG K  K+               
Sbjct: 260 IEAPNIFHTNTLTEN----IRDIQEKDRYHVILANPPFGGKERKEVQQNFD--------- 306

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 K  + + LFL H    L+     GGRA IV+ ++ L N    S    +R+ LLE
Sbjct: 307 -----IKTGETASLFLQHFIKSLKA----GGRAGIVIKNTFLSNADNAS--VSLRKHLLE 355

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  +  I+ +P   F    + T +   +  +  ++      I    L T       K   
Sbjct: 356 SCNLHTILDMPAGTFLGAGVKTVVLFFTKGEPTKK------IWYYQLDTG--RSMGKTNP 407

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           +NDD  ++   +  +  +   S  +D  +       + 
Sbjct: 408 LNDDDMQEFKQLQKTLADSDNSWTVDISSINTSNYDLS 445


>gi|197119931|ref|YP_002140358.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter bemidjiensis Bem]
 gi|197089291|gb|ACH40562.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter bemidjiensis Bem]
          Length = 484

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 145/433 (33%), Gaps = 61/433 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---- 93
              L+ L   LE  ++   E         +D     +          +   +   +    
Sbjct: 32  LLFLKYL-DGLEQDKAMEAELEGKKYSYILDEPYRWETWAAPKGADGQLDHNKAMTGDDL 90

Query: 94  -TNTRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                  L  Y+  F   A           +  F     ++     L  I  +   +   
Sbjct: 91  RDFVDRKLFPYLHGFKQKASGPNTIEYKIGEI-FGEIKNKIHSGYSLRDIIDHIDELRFR 149

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +     +S +YE  IR  G+       ++ TPR ++     ++           P + 
Sbjct: 150 SQSEK-HELSQLYEAKIRNMGN-AGRNGGEYYTPRPLIRAIVQVV----------KPEIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
             +YD   G+ GFL +A +++        +  K+      +G+E +   + + +  +++ 
Sbjct: 198 ERIYDGAVGSAGFLCEAYDYLVAKPNLTTADLKMLQERTFYGKEKKSLAYVIAIMNLILH 257

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E+      +   +       D+    RF   L+NPPFG K            +  E+ 
Sbjct: 258 GIEAPNIIHTNTLTEN----LADVQEKDRFDVILANPPFGGK------------ERPEVQ 301

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +  P   +  + + LFL H    L+     GGRA +V+ ++ L N    +    +R+ LL
Sbjct: 302 QNFP--IRTGETAFLFLQHFIKMLKA----GGRAGVVIKNTFLSNTDNAA--VSLRKLLL 353

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+  +  I+  P   F    + T +               + I    L         K  
Sbjct: 354 ESCNLHTILDCPGGTFQGAGVKTVVLFFEKGAP------TREIWYYQL--DPGRNMGKTN 405

Query: 443 IINDDQRRQILDI 455
            +NDD   + +++
Sbjct: 406 PLNDDDLIEFVEL 418


>gi|148654895|ref|YP_001275100.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148567005|gb|ABQ89150.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 534

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 160/433 (36%), Gaps = 60/433 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVR-----EKY 59
             +L   +W+  + L  D       +    L     L+  +   E  + A       E Y
Sbjct: 8   NETLGTDLWRACDILRRDNNVGGVMQYTEHLAWLLFLKFFD--QEEKKRAQEAAFRGETY 65

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSDNAKAIFEDF 118
           +     ++  +++        +++S   L           L S   S  ++    +F D 
Sbjct: 66  IPVLPPDLAWDAWAGPEALQKWDSSRGQLVAFVRGRLLPGLASLNGSPLANTIARLFSDE 125

Query: 119 DFSSTIARLEKAGLLYKI-----CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                                      + I+   D      ++  YE L+ R G   ++ 
Sbjct: 126 SIGDQTVVRNVPVCASDYNLKDVLTIINAIDFERDD-HFFTITRFYEDLLARMGQ-ENQI 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TPR ++     ++           P +  T+YDP CG+ GFL  A   +      
Sbjct: 184 AGEFHTPRPIIRFMVEVI----------DPQIGETVYDPACGSAGFLAQAHLWMEKNAHT 233

Query: 234 HKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
            +    L     +G+E +     +    +++  +        + NI + +TL + + TG 
Sbjct: 234 LEDLETLQQRTFYGREKKALAALLGTMNLILHGV-------TTPNIVRANTLEESVKTGV 286

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +RF   L+NPPFG K          E ++ +     PG    +   +LFL H+  KL+ 
Sbjct: 287 AERFDIVLTNPPFGGK----------EGRHIQQNFPVPG----NATELLFLQHIIKKLK- 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
            P    RAA+V+    LF   A    +E++R LL++  + A+++LP   F   +++ T L
Sbjct: 332 -PTANARAAVVVPEGTLFRSGA---FAEVKRMLLDDFHLFAVISLPPGAFAPYSDVKTAL 387

Query: 408 WILSNRKTEERRG 420
                 +    R 
Sbjct: 388 LFFRRTEGSHIRN 400


>gi|168178056|ref|ZP_02612720.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC
           2916]
 gi|182670476|gb|EDT82450.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC
           2916]
          Length = 485

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/502 (16%), Positives = 186/502 (37%), Gaps = 65/502 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  ++ L+       +    + L      +    F     Y  ++  +   +        
Sbjct: 35  FLFIKDLDEN--EKLAESDAELLGIPFEGM----FPSDRQYLRWSKFKNEEAGEMYRIVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I     + ++ +  +  S  + ++    +L KI      +E+           +
Sbjct: 89  QEVFPFIKDIHGDKQSAYSKY-MSDAMFKIPTPLMLSKIVDAIDNLEI----QDKDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P     + DP  GT 
Sbjct: 144 LYEYLLSKVATAGTN--GQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMGTA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++ +  S   +   L  H       G +++     +    M++  ++     
Sbjct: 192 GFLVGAEEYLREKHSELFLVQGLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 247 --NPNIEYKDSLSETNKDSEKYTLVLANPPF-------KGSLDYEAVSADLLK----VSK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D+  
Sbjct: 348 ISMPSGVFKPYAGVSTAIIIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNPIEDNDI 403

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ + +      R+  + S  +           +          ++      +  + 
Sbjct: 404 SDIIERFNNLDKEEDRKRTEQSFFVPVDEIRENNYDLSINKYKEIEYEEVVYDEPKVILE 463

Query: 504 WRKLSPLHQSFWLDILKPMMQQ 525
             K      +  +D L+ M+++
Sbjct: 464 RVKKLEKEINEGIDELERMIER 485


>gi|313207213|ref|YP_004046390.1| n-6 DNA methylase [Riemerella anatipestifer DSM 15868]
 gi|312446529|gb|ADQ82884.1| N-6 DNA methylase [Riemerella anatipestifer DSM 15868]
 gi|315022985|gb|EFT36006.1| type I restriction enzyme M protein [Riemerella anatipestifer
           RA-YM]
 gi|325335341|gb|ADZ11615.1| Type I restriction-modification system methyltransferase subunit
           [Riemerella anatipestifer RA-GD]
          Length = 515

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/527 (17%), Positives = 179/527 (33%), Gaps = 89/527 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNID--LESFVKVAGYSFY---NTSEYSLSTLG 92
              L++L+      ++ + E+   FG SN      S      +SF+   +          
Sbjct: 35  LIFLKQLDDK----QTTIEEEKTLFGASNHKDIYASEQNELRWSFFKDKDPEVMFDIFTK 90

Query: 93  STNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                +NL ++   F     A+   F          +    LL ++ +    + L+    
Sbjct: 91  PNPEIDNLTAF--DFMKTLGAVGGKFSEYMKGATFMIPTPNLLDRVVQQIDKLPLN---- 144

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 ++YE+++ +     +     F TPR ++ +   L+           P    T+ 
Sbjct: 145 RRDTKGDLYEYMLSKIAEAGTN--GQFRTPRHIIRMMVELM----------QPQQEDTVC 192

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRR 263
           DP  GT GFL     ++ +      +           + HG E++P    +    + +  
Sbjct: 193 DPAMGTAGFLVATGEYLHERHQDWFLDKTFRRHFSEDMFHGIEIDPSMMRIASMNLQLHG 252

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +ES        NI  GS L++      ++   L+NPPF  K   + D VE          
Sbjct: 253 IES-------PNITGGSALAESNTITGKYSLILANPPF--KGALNYDEVESSLLQ----- 298

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL  +   L+L    GGRAA+++    LF     +    IR+ L+E
Sbjct: 299 ----VTKTKKTELLFLSLILRMLKL----GGRAAVIVPDGVLF--GNSTAHKNIRKELIE 348

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW--------TSI 434
           N  ++ ++++P+ +F     ++T + + +   T     KV   + T             I
Sbjct: 349 NHQLQGVISMPSGVFKPYAGVSTAILLFTKTNTGG-TEKVWFYDMTTDGYSLDDKRTAKI 407

Query: 435 RNEGKKRRIINDDQR-----------------RQILDIYVSRENGKFSRMLDYRTFGYRR 477
            NE  +      +Q                  R I  +   R    F  ++         
Sbjct: 408 TNEQLEACFDTPEQIQSEVAEHCDIPRILTDWRNIDKVGTDRTQKSF--LVAKADIVAND 465

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +        + +        A IT  K     +   ++ L+ M+ 
Sbjct: 466 YDLSINRYKEIVYETIAYETPSAIITQIKDLQTQRQQAMEALEKMLN 512


>gi|262067420|ref|ZP_06027032.1| putative type I restriction-modification system, M subunit
           [Fusobacterium periodonticum ATCC 33693]
 gi|291378863|gb|EFE86381.1| putative type I restriction-modification system, M subunit
           [Fusobacterium periodonticum ATCC 33693]
          Length = 498

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 192/499 (38%), Gaps = 60/499 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+   +  +   +E+ L     N D +            ++   L         
Sbjct: 35  LIFMKRLD---QEEQRKEKEQKLGSIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  ++  ++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  VRNEAFEFIKNLDEDKNSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSG--KNGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++              +K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKKNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  +++  +LS D      +   L+NPPF       K +V++   +  L R   
Sbjct: 258 ------TPKLKRIDSLSTDYSEENEYTLILANPPF-------KGSVDEALLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF       L++    GGRAA+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VAKTKKTELLFNALFLRLLKI----GGRAAVIVPDGVLF--GASNAHRNLRKELIENNQ 354

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +EAI+++P+ +F     ++T + I +       +G    +   D+     +   KR  + 
Sbjct: 355 LEAIISMPSGVFKPYAGVSTGILIFTK----TGKGGTDNVWFYDMTADGYSLDDKRNPVE 410

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEAD 501
           ++    I++ + + EN K  +  D   F  ++  +     +S      +    +   E  
Sbjct: 411 ENDIPDIMERFSNLENEKDRKRTDKSFFVPKQEIIDNDYDLSINKYKEIVYEKVEYEEPK 470

Query: 502 ITWRKLSPLHQSFWLDILK 520
           +   KL  L +S    + +
Sbjct: 471 VILEKLEELSKSIDEKLKE 489


>gi|296122895|ref|YP_003630673.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
 gi|296015235|gb|ADG68474.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
          Length = 484

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 146/446 (32%), Gaps = 59/446 (13%)

Query: 38  FTLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGS 93
              L+ L+   +          +KY          E++    G     + +         
Sbjct: 32  LLFLKYLDGLEQDKADEAALEGKKYTFILDPPYRWEAWAAPKGKDGLIDHNRAQTGDDLR 91

Query: 94  TNTRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                 L  Y+  F   A           +  F     ++     L +I  +   +    
Sbjct: 92  DFVNEKLFPYLHGFKQKAIGPNTIEYKIGEI-FGEIKNKISSGYNLREIIDHIDELRFRS 150

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            T     +S++YE  I+  G+       ++ TPR ++     ++           P +  
Sbjct: 151 QTEK-HELSHLYEAKIKNMGN-AGRNGGEYYTPRPLIRAMIQVV----------KPKIGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +YD   G+ GFL +A  ++           K       +G+E +   + + +  M++  
Sbjct: 199 RIYDGAVGSAGFLCEAFEYLRAKRGLTTKEAKTLQEKTFYGKEKKSLAYVIAIMNMILHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+      +   +       D+    R    L+NPPFG K  K+               
Sbjct: 259 IEAPNIVHTNTLTEN----LADIQEKDRVDVVLANPPFGGKERKEVQQN----------- 303

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 +  + + LFL H    L+     GGR  +V+ ++ L N    S    +R+ LLE
Sbjct: 304 ---FPIRTGETAFLFLQHFIKILKA----GGRGGVVIKNTFLSNTDNAS--VSLRKLLLE 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  + A++  P   F    + T +          +    QL    +L         K   
Sbjct: 355 SCNLYAVLDCPGGTFQGAGVKTVVLFFEKGAPTRKVWFYQLDPGRNLG--------KTNP 406

Query: 444 INDDQRRQILDIYVSRENGKFSRMLD 469
           +ND    + +++  +  +   S  ++
Sbjct: 407 LNDADLAEFIELQATCADSPKSWSVE 432


>gi|327191125|gb|EGE58171.1| N-6 DNA methylase [Rhizobium etli CNPAF512]
          Length = 484

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 153/451 (33%), Gaps = 75/451 (16%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS-----------TNTRNNLESYIASFS----- 108
            + D E  +    Y      ++   +  +           T     L   + +       
Sbjct: 40  DDQDQELELTRDDYVSPIPEKFQWRSWAADPEGITGEALLTFVNIELFPALKALPVSAQP 99

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + + +  D  F      ++   L+ ++    S ++ +      +    IYE ++    S
Sbjct: 100 GDRRRVVRDL-FEDAYNYMKSGQLIRQVVNKISDVDFN-SLTERQHFGEIYEQILNDLQS 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +  A ++ TPR +       +           P    TL+DP CGTGGFL+ A+ H+ 
Sbjct: 158 AGN--AGEYYTPRALTSFMVDRI----------DPTPGETLFDPACGTGGFLSCAIRHME 205

Query: 229 DCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +          E +P  H +CV  ML+  +E          ++  +TL++ 
Sbjct: 206 RNHVRTPEQRERMQAGLRAVEKKPLPHMLCVTNMLLHGIED------PSFVRHDNTLARP 259

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  +R    L+NPPFG +   ++D +E                +  + + LFL  +
Sbjct: 260 LISWGKDERVDIILTNPPFGGR---EEDGIENNFP----------TFRTKETADLFLALI 306

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
              L+     GGRAA+VL    LF       ++ ++  LL    +  IV LP  +F    
Sbjct: 307 VRLLK----PGGRAAVVLPDGSLFGEGT---KTRLKEHLLGECNLHTIVRLPNSVFKPYA 359

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYVSRE 460
           +I T L         +       I   +       +     + I  +  +  +D +  RE
Sbjct: 360 SIGTNLLFFEKGTPTKD------IWYWEHRVPEGQKAYSMTKPIRREHLQDCVDWWGGRE 413

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                           R+K+       + LD
Sbjct: 414 RKDRQ-----EGPQAWRVKLEEVKARGYNLD 439


>gi|254435715|ref|ZP_05049222.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
 gi|207088826|gb|EDZ66098.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
          Length = 398

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 146/369 (39%), Gaps = 57/369 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  + V GY     S +  ST          E  I   +++     +        
Sbjct: 40  DDKEQEWQLTVPGYKSPLPSRFRWSTWAKNPEGITGEELIDFVNNDLFPALKKLATTAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE ++    S 
Sbjct: 100 SPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEENVDFNKSGDRHLFNDIYEKILADLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P + +++ DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTQFMVDIL----------DPQLGQSILDPACGTGGFLTCAIEHLNK 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              ++     L    HG E +P  H + +  +++  +      D+  NI+  +TLS+ L 
Sbjct: 208 QVKNNDDRQRLQDSIHGVEKKPLPHMLAMTNVMLHGI------DVPTNIRHDNTLSRPLK 261

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +R    ++NPPFG     ++D +E            P   +  + + LF+  + +
Sbjct: 262 NYSPKERVDIIITNPPFGG---MEEDGIENNF---------PRKYQTRETADLFMALIMH 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+   +  G+AA+VL    LF       ++ ++R LLE   +  IV LP  +F   T+I
Sbjct: 310 LLK---HDTGKAAVVLPDGFLFGEGT---KTTLKRELLEEFNLHTIVRLPKGVFAPYTSI 363

Query: 404 ATYLWILSN 412
           AT   +L  
Sbjct: 364 ATIFCLLKK 372


>gi|254425432|ref|ZP_05039150.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
 gi|196192921|gb|EDX87885.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
          Length = 524

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 171/510 (33%), Gaps = 47/510 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              +F  +I    L + L          +     +       +    +            
Sbjct: 29  DGNEFK-IITQVFLYKFLNDKFAYEVKQIDADIDSTESWEQAINQLSEDDFELLQMQLSA 87

Query: 87  SLSTLGSTN------TRNNLESYIASFSDNAKAI-FEDFD-FSSTIARLEKAGLLYKICK 138
             + L   +       + N   +   F D  + I   + D FS    R  K  L  ++ +
Sbjct: 88  DTAKLKPEHFISHLFAQQNAPEFAKLFDDTLRDIAITNNDIFSVKTDRGGKVTLFDRVSE 147

Query: 139 NFSGIELHPD------------------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             + +    +                  T      + I+E+LI+ +  +      ++ TP
Sbjct: 148 FITDLSRRDEFCRAIINKLVAFSFERIFTEKYDFYATIFEYLIKDYNKDSGGKYAEYYTP 207

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +  A+L+        ++     + YDP+ G+G  L +  + + +         I 
Sbjct: 208 HAVAKIMAAILVPEHQRGKIQNV----SCYDPSAGSGTLLMNIAHAIGEERCSIFPQDIS 263

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
               Q+         +   L+  +++  + +            KD    K F Y +SNPP
Sbjct: 264 ----QKSSSLLRLNLILNNLVHSIQNVIQGNTLLQPYH-----KDGKKLKLFDYIVSNPP 314

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F   +   +D ++ +          P +PK +   M         +       G+AA+V+
Sbjct: 315 FKMDFSDFRDDLDSDKNKKRFFAGIPNVPKKAVNKMAIYQLFLQHIIFSLKPEGKAAVVV 374

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
            +  L        + +IR  L++  ++  +V++P+++F  T     +  +     E+   
Sbjct: 375 PTGFL--TAQAGIDKKIRMKLIDEKMLAGVVSMPSNIFATTGTNVSIVFIDKANKED--- 429

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIK 479
            V LI+A+ L  + +    ++ ++ + +  +I+  +  +E    F+ +  Y     +   
Sbjct: 430 -VVLIDASGLGETAKEGKNQKTVLTETEEEKIIATFNEKEVVDDFAVVTTYDQIRSKNYS 488

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSP 509
                     ++ T +   E +   +  S 
Sbjct: 489 FSAGQYFEIKIEYTDITPEEFNAKIKDFSE 518


>gi|148378678|ref|YP_001253219.1| type I restriction enzyme M subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930941|ref|YP_001383062.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936955|ref|YP_001386611.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. Hall]
 gi|148288162|emb|CAL82230.1| type I restriction enzyme M subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|152926985|gb|ABS32485.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932869|gb|ABS38368.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. Hall]
          Length = 485

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 184/501 (36%), Gaps = 65/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  ++ L+       + +  +  A          F     Y  ++  +   +        
Sbjct: 35  FLFIKDLDD------NEILAESDAELLGIPFEGMFPSDKQYLRWSKFKNEPAGEMYRIVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I     + ++ +  +  S  + ++    +L KI  +   I ++          +
Sbjct: 89  EEVFPFIKDIHGDEQSAYSKY-MSDAMFKIPTPLMLSKIVDSIDNINMN----DKDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +     +     F TPR ++ +   L+           P     + DP  GT 
Sbjct: 144 LYEYLLSKIAQAGTN--GQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMGTA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++ +  +       L  H       G +++     +    M++  ++     
Sbjct: 192 GFLVGAEEYLRENHNDLFFVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 247 --NPNIEYKDSLSETNKDSEKYTLVLANPPF-------KGSLDYEAVSADLLK----VSK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D+  
Sbjct: 348 ISMPSGVFKPYAGVSTAIMIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNPIEDNDM 403

Query: 450 RQILDIYVS--RENG----KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ + +  +E      + S  +           +          ++      +  + 
Sbjct: 404 PDIIERFSNLDKEEDRNRTEQSFFVPVEEIRENDYDLSINKYKEIEYEEVVYDEPKVILE 463

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
             K      +  +D L+ M++
Sbjct: 464 RVKKLEKEITEGIDELEKMIE 484


>gi|328542330|ref|YP_004302439.1| Type I restriction modification system M subunit (Site-specific
           DNA-methyltransferase subunit) [polymorphum gilvum
           SL003B-26A1]
 gi|326412077|gb|ADZ69140.1| Type I restriction modification system M subunit (Site-specific
           DNA-methyltransferase subunit) [Polymorphum gilvum
           SL003B-26A1]
          Length = 512

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 138/386 (35%), Gaps = 53/386 (13%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              ++RL+    +E  +S   +  +         +   +      ++  +          
Sbjct: 35  LLFIKRLDDLHTVEERKSQTLKIPMERRIFPEGRDDKGRPYDDLRWSRFKNFEPREMMDV 94

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
              ++  ++ + + + ++ +                LL K+ +    I +          
Sbjct: 95  VDEHVFPFLRALNGS-QSSYGKL-MRDARLGFSNPALLAKVVEKLDRIPME----DRDTK 148

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+++ +  S        F TPR ++ L   +           +P     + DP  G
Sbjct: 149 GDVYEYMLAKIASAG--QNGQFRTPRHIIRLMVEMT----------APKPTDAICDPAAG 196

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A  ++ +        P L         HG + +     +    M +  +E   
Sbjct: 197 TCGFLVAAGEYLREKHPELMRDPALRKHFHEGLFHGFDFDTTMLRIGAMNMTLHGVE--- 253

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               + N+    +L++D       +   L+NPPF    + +  A + +            
Sbjct: 254 ----NPNVTYRDSLAEDHAEDAGAYSLVLANPPFAGSLDYEATAKDLQK----------- 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LF+      L+     GGRAA+++    LF   +     +IRR L+E+  +
Sbjct: 299 IVKTRKTELLFIALFLRLLKT----GGRAAVIVPDGVLF--GSSGAHKDIRRMLVEDHKL 352

Query: 388 EAIVALPTDLF-FRTNIATYLWILSN 412
           +A++ LP+ +F     ++T + + + 
Sbjct: 353 DAVIKLPSGVFRPYAGVSTAILLFTK 378


>gi|268599116|ref|ZP_06133283.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268583247|gb|EEZ47923.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11]
          Length = 359

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 132/341 (38%), Gaps = 19/341 (5%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI+ + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L
Sbjct: 1   YLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD----VYDPSAGSGTLL 56

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  + + +         I     Q+             L+  L +  + +   +     
Sbjct: 57  MNVAHVIGEDKCMIYTQDIS----QKSSNLLRLNLSLNNLVHSLNNVVQGNTILSPYHKD 112

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              +     K+F + +SNPPF   +   +D +E +          P +       M    
Sbjct: 113 ASDR----LKKFDFIVSNPPFKLDFSDFRDQLESDENRERFFAGIPKIKAKDKDKMEIYQ 168

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                +       G+AAIVL +  +        + +IR +L+EN ++  +V++P+++F  
Sbjct: 169 LFIQHILFSLKENGKAAIVLPTGFITAQS--GIDKKIREYLVENKMLAGVVSMPSNIFAT 226

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I + + +++
Sbjct: 227 TGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNKQ 282

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
               FS ++ Y     +   +         +D   ++  E 
Sbjct: 283 AVEDFSVVVGYDEIKAKNHSLSAGQYFEVKIDYVDISADEF 323


>gi|254517361|ref|ZP_05129418.1| type I restriction-modification system, M subunit [gamma
           proteobacterium NOR5-3]
 gi|219674199|gb|EED30568.1| type I restriction-modification system, M subunit [gamma
           proteobacterium NOR5-3]
          Length = 489

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 146/384 (38%), Gaps = 45/384 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNT 96
              L+ L+   E     + + +++    ++   ++     G +     ++    L     
Sbjct: 34  MIFLKILDDR-EAELELIEDDFVSPIPEHLRWRNWAANPEGQTGEALLDFVNGVLFPKLK 92

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               +  +   +   ++IF+       +  ++   L+ ++    + I+ + +T       
Sbjct: 93  ELQAQGAVGKRAQVVRSIFD-----GALNFMKSGTLMRQVINKINEIDFN-NTENRHTFG 146

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE +++   S  +  A +F TPR V  L    L          +P +   ++DP CGT
Sbjct: 147 DIYEKILKDLQSAGN--AGEFYTPRAVTRLIIDRL----------NPQLDEIVFDPACGT 194

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GGFL+ A++H             L     G E +     +C+  M++  +++        
Sbjct: 195 GGFLSCAIDHKQQFVRTSADRETLARTLRGVEKKSMPFNLCITNMILHGIDTPTGIAHDN 254

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            + +     KD     R H   +NPPFG     ++D +E            P   +  + 
Sbjct: 255 TLARP---FKDYGDKDRVHVIATNPPFGG---MEEDGIENNF---------PAQYRTRET 299

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           + LF+  +   L +     GRA ++L    LF     S    I++ L+E   +  I+ LP
Sbjct: 300 ADLFMALIIKLLRV----NGRAGVILPDGFLFGEGTKSS---IKKDLIETCNLHTIIRLP 352

Query: 395 TDLF-FRTNIATYLWILSNRKTEE 417
             +F   T I T +   +  +  E
Sbjct: 353 GGVFNPYTGIKTNILFFTKGQPTE 376


>gi|332673287|gb|AEE70104.1| type I restriction enzyme M protein [Helicobacter pylori 83]
          Length = 487

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 158/479 (32%), Gaps = 55/479 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFITLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L++     S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNATSTDETTIALFESISQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +   +   ++ 
Sbjct: 151 EESKRANFTRALLNKLRNFDFKQAFLNLQNQQGYDFFAPIFEYLLKSYNNASGDTYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PTQNVKIYDPSAGTGTLLMALAHQIG--------TN 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +    +++  L    +  +  N       SK+     R  Y +SN
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLILNDLTHSLKYAIEGNTLTNPYHSKECKG--RMDYIVSN 312

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF   +  +   + +   +  LG   P +PK     M              N  G+ AI
Sbjct: 313 PPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLNNKGKGAI 370

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+ +  +        E++I R L++  L+  ++ +P+ +F  T     +      K    
Sbjct: 371 VVPTGFISAKS--GIENKIVRHLVDKRLVYGVICMPSQVFANTGTNVSVIFF---KKTPS 425

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYR 476
             +V LI+A+ L         K+  +       IL+ + ++ +   F  ++ +     +
Sbjct: 426 VNEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCTLVSFDEIIEK 484


>gi|315637034|ref|ZP_07892257.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315478570|gb|EFU69280.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 494

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 197/519 (37%), Gaps = 81/519 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVRE------KYLA 61
           + + I +  + L  D   +        I     L+ L   LE ++S   E       Y+ 
Sbjct: 1   MESKINRITDILRRDDGISGAMHYTEQISWVLFLKFLAD-LEESKSEDAELDGEIYTYII 59

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNAKAIF 115
                    + +KV G      S+     L        L  Y+  F        + K   
Sbjct: 60  DEKYRWQNWAVLKVDGKKDIINSKSGDDLL--DFVNKELFPYLKGFKSITENPKSIKYKI 117

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               F     R+     L +I      ++ H  +     +S IYE L++  GS+      
Sbjct: 118 GAI-FEFLDNRIANGHTLREILDIIDEMDFHNQS-DLFQLSLIYEKLLKDMGSDGGNS-G 174

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR ++ + T ++          +P + +T+YDP  G+ GFL +A NH+      + 
Sbjct: 175 EFYTPRPLIKVITDVV----------NPTIGQTIYDPAVGSCGFLIEAYNHIRYADVQNN 224

Query: 236 IPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               L              G E  P ++ + V  M++  +ES        NI + +TL+K
Sbjct: 225 KQRDLSTDQLKFLNEDTFFGNEKTPLSYVMGVMNMILHGIES-------PNIAKSNTLTK 277

Query: 285 D---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           D   L    RF   L+NPPFG K        EKE              K +   +LFL H
Sbjct: 278 DIRGLEEKDRFDCILANPPFGGK--------EKEQIQQNFP------IKSNATELLFLQH 323

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400
           + N L+L    GG+  +V+    LF  +  +    +++ LLE   +  I++LP+ +F   
Sbjct: 324 MMNHLKL----GGKCGVVIPEGVLF--QTNNAFQSVKKDLLERFNVHTILSLPSGVFLPY 377

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           + + T +         +R G    I   +   +   +  K + IN D   + LD + SR+
Sbjct: 378 SAVKTNVVFF------DRVGSTNDIYYYE--VNPPYKLTKNKPINIDHFAEFLDSWESRK 429

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
             + S +++        I    P +   I  K+ +  +E
Sbjct: 430 ISENSWIVNVNDIKDFDISAKNPNKNETIEHKSPIELVE 468


>gi|317405483|gb|EFV85792.1| type I restriction modification enzyme M subunit [Achromobacter
           xylosoxidans C54]
          Length = 492

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 135/374 (36%), Gaps = 57/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  +  + Y     S +  S           E  I   +++     +        
Sbjct: 40  DDKEQEWELTQSNYRSPLQSRFRWSDWAKDPEGMTGEELIDFVNNDLFPSLKQLATKAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE ++    S 
Sbjct: 100 SAQGRVIGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNSSSDRHLFNDIYEKILADLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P +  ++ DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTQFMVDIL----------DPKLGESILDPACGTGGFLTCAIEHLKK 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSK 284
                    +L    HG E +P  H + +  M++  +      D+   I+  +T     K
Sbjct: 208 QVKTPDDNRLLQENIHGVEKKPLPHMLALTNMMLHGI------DVPTRIRHDNTLSRPFK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +EK               +  + + LF+  +  
Sbjct: 262 DYGPRDRVDIIITNPPFGG---MEEDGIEKNFL---------AKHQTRETADLFMALIMY 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L    +  GRAA+VL    LF       ++ ++R LLE   +  +V LP  +F   T+I
Sbjct: 310 LLR---HDTGRAAVVLPDGFLF---GEGVKTTLKRELLEEFNLHTVVRLPKGVFAPYTSI 363

Query: 404 ATYLWILSNRKTEE 417
            T +         +
Sbjct: 364 VTNILFFEKGGPTK 377


>gi|332524592|ref|ZP_08400795.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2]
 gi|332107904|gb|EGJ09128.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2]
          Length = 613

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 169/474 (35%), Gaps = 86/474 (18%)

Query: 36  LPFT----LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS---- 87
           LP       L+ L+         V E+     G     E  ++         +       
Sbjct: 55  LPLLTWVMFLKFLDDL-----EIVHEEEAELDGKRY--EPIIEAPYRWRDWAAREDGISG 107

Query: 88  ---LSTLGSTNTRNN-------LESYIASFSD-----NAKAIFEDFDFSSTIARLEKAGL 132
              L+ +G   TR         L +Y+ S        + + +  +  F     R+    L
Sbjct: 108 DELLAFIGQEQTRRADGSAGPGLFAYLRSLGSRGAKGSQREVIANV-FKGVQNRMVSGYL 166

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  I    +GI           +S++YE ++R       +   +F TPR VV      + 
Sbjct: 167 LRDILNKINGIHFSASE-EIHTLSHLYESMLREMRDAAGDS-GEFYTPRPVVRFMVQAM- 223

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEP 249
                     P +  T+ DP CGTGGFL +A +H+A         +        GQE +P
Sbjct: 224 ---------DPQLGETVLDPACGTGGFLVEAFHHMAGQVKNPDQRRTLQRSSLFGQEAKP 274

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             + +    +L+  LE+      +   +       ++   +R    L+NPPFG       
Sbjct: 275 LPYMLAQMNLLLHGLEAPQIAYGNTLER----RINEIGHSERVDVILTNPPFGG------ 324

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP---------PNGGGRAAIVL 360
                E + G    F P   + ++ ++LFL ++  KL +             GGRAA+V+
Sbjct: 325 -----EEEAGIKNNFPPN-MQTAETALLFLQYIMRKLRVAGAPVAGGKAAARGGRAAVVV 378

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERR 419
            +  LF     +    I++ +L+   +  IV LP  +F   T+I   L         ER 
Sbjct: 379 PNGTLFGDGICAV---IKQEMLKEFRLHTIVKLPQGVFAPYTDIPANLLFF------ERG 429

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI---YVSRENGKFSRMLDY 470
           G    I   +L   +    KK       Q  +       + +RE G  +  +D+
Sbjct: 430 GPTDTIWYYEL--PLPEGRKKYSKTAPLQFEEFTAAQAWWTAREEGPQAWKVDF 481


>gi|302879962|ref|YP_003848526.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2]
 gi|302582751|gb|ADL56762.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2]
          Length = 540

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/489 (18%), Positives = 173/489 (35%), Gaps = 87/489 (17%)

Query: 20  EDLWGDFKHTDFGKVI-----LPFTLLRRLECALEPTRSA----VREKYLAFGGSNIDLE 70
           + +        +   +     L F     L   ++   +     +++ Y +       L 
Sbjct: 12  DQIRNYLYGGGYPDPMSNAEQLSFLFFFYLIEGIDAENTMKAKVMKQPYESLFAGEWTLR 71

Query: 71  SFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED------FDF-S 121
           + +            S +  S      +  +L  ++    D     F +      F+F +
Sbjct: 72  NPLNAPESDSKTITKSRFKWSVWAKGLSGESLVRFVR---DEVFPFFAEVAERSAFNFMN 128

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                +++  +L ++     G+ L  D        +++EH++R+           F TPR
Sbjct: 129 GARLTIDEPTVLTQVVNLVDGLRL--DQADADTKGDLFEHVLRQIKQAG--ELGQFRTPR 184

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----------DCG 231
            V+     +L           P +  T+YDP  GT GFL  A NH+           D  
Sbjct: 185 HVIRAIVEML----------DPKIGETIYDPAAGTAGFLAAAYNHIRLANSSPSGISDAE 234

Query: 232 SHHKIP----------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           S  K+                      +G +++P+   +    + +R L +   +  +  
Sbjct: 235 SDGKLQKRGIGDKLSAAQVSVLQNSTFYGNDVDPKMVRLATMNLTLRGLPNVRIQLRNGL 294

Query: 276 IQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                   K       + +H  L+NPPF  +   DKD +  E K G            + 
Sbjct: 295 TTTQDNERKAELGLPLEGYHVVLANPPFSGR--VDKDRIVDEVKVG----------TSTA 342

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL ++ + L      GGR  +++    LF   +     E+RR L+EN+ +EA+++L
Sbjct: 343 TEILFLKYMMDCLRP----GGRCGVIIPEGVLF--GSTGAHKELRRQLIENNTVEAVLSL 396

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P  +F   + + T +       T     KV  ++A +    +  +      I  D    +
Sbjct: 397 PGGVFQPYSGVKTSVLFFKKGGT---TDKVMFLHADNDGYKM--DANHDTPIAADDLPML 451

Query: 453 LDIYVSREN 461
            D Y+SR+ 
Sbjct: 452 ADAYLSRKE 460


>gi|193212615|ref|YP_001998568.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327]
 gi|193086092|gb|ACF11368.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327]
          Length = 488

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 57/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E    +  Y          S           E  I   +++     ++       
Sbjct: 40  DDREQEWLFTLPEYRSPLLPHLRWSNWAKDPEGITGEELIDFVNNDLFPSLKNLATTPGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE L+    S 
Sbjct: 100 SSHGRVVGSVFEDAYNYMKSGTLLRQVINIIEEDVDFNTSGDRHLFNDIYEKLLADLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P +  +L DP CGTGGFLT A+ H+ +
Sbjct: 160 GN--AGEYFTPRAVTQFMVDML----------DPQLGESLLDPACGTGGFLTCAIEHLNE 207

Query: 230 CGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---K 284
                  +       HG E +P  H + V  M++  +      D+  NI+  +TLS   K
Sbjct: 208 QVKTVDDREKIQESLHGVEKKPLPHMLAVTNMMLHGI------DVPTNIRHDNTLSRPLK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +EK           P   +  + + LF+  + +
Sbjct: 262 DYSPKDRVDLIITNPPFGG---MEEDGIEKNF---------PRQYQTRETADLFMALIMH 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+      G+AA+VL    LF       ++ +++ LLE+  +  IV LP  +F   T+I
Sbjct: 310 LLK---PDTGKAAVVLPDGFLF---GEGVKTTLKKELLESFDLHTIVRLPKGVFSPYTSI 363

Query: 404 ATYLWILSNRKTEE 417
           AT +         +
Sbjct: 364 ATNILFFKKGGPTK 377


>gi|126463982|ref|YP_001045095.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105793|gb|ABN78323.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 481

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 143/394 (36%), Gaps = 70/394 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESFVKVAGYSFYNTSEY-SLS 89
              L+ ++   +      R++Y       + +     D E        SF N S +  L 
Sbjct: 33  MFFLKIIDDQ-DEALELTRDEYISPIPADMQWRAWAADPEGMTGDELLSFVNESLFPRLK 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            L  T  R  +   +               F      ++   LL ++    +G++ + + 
Sbjct: 92  NLRPTAPRARVIRDV---------------FEDAYNFMKSGQLLRQVINKINGVDFN-NL 135

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
              +   +IYE L+    +  +  A ++ TPR V       +           P     L
Sbjct: 136 TERQHFGDIYEQLLNDLQNAGN--AGEYYTPRAVTAFMVQQI----------DPRPGEIL 183

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT AM H+ D       H+          E +P  H +CV  ML+  +E 
Sbjct: 184 MDPACGTGGFLTCAMRHMRDRHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVE- 242

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    ++  +TL++        +R    L+NPPFG K   ++D +E          
Sbjct: 243 -----EPHFVRHDNTLARPLTSWTRDERVDIVLTNPPFGGK---EEDGIENNFP------ 288

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 +  + + LFL  +   L+     GGRAA+VL    LF       ++ ++  L+ 
Sbjct: 289 ----TFRTRETADLFLALIIRLLK----PGGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTE 416
              +  IV LP  +F    +I T L         
Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPT 371


>gi|218282513|ref|ZP_03488763.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989]
 gi|218216500|gb|EEC90038.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989]
          Length = 507

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 177/510 (34%), Gaps = 60/510 (11%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLG 92
           I     +R L+ A            + +     D     +  + G     ++ +      
Sbjct: 32  ITYLMFIRDLDVADNKKAKESNMLGIPYTSVFADEVMIGERSIDGNQLKWSTFHDYPANK 91

Query: 93  STNTRNNL-ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTV 150
                      +I     +  + +  +     I ++  A +L K+  +   I  L   T 
Sbjct: 92  QYEIMQEWVFPFIKILHSDKDSAYSKY-MDDAIFKIPTALVLSKVIDSLDEIYSLMDKTT 150

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  ++YE+L+ +  S        F TPR ++ +   L+          +P     + 
Sbjct: 151 SMDIRGDVYEYLLSKIASAGRN--GQFRTPRHIIRMMVELM----------NPTPQELIC 198

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIR 262
           DP CGT GFL  A +++ +   +  +            + +G +++     +    M+  
Sbjct: 199 DPACGTSGFLVVASDYLMEKYRNDILMNKQNRDHFMNHMFNGFDMDRTMLRIGAMNMMTH 258

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +ES        NI+   +LS       ++   L+NPPF  K   D D+V  +       
Sbjct: 259 GVES-------PNIEYRDSLSDQNTDNNKYSMILANPPF--KGSLDYDSVSTDLLK---- 305

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                + K     +LFL      L++    GGR A ++    LF   +      IR+ ++
Sbjct: 306 -----IAKTKKTELLFLALFIRMLKV----GGRCACIVPDGVLF--GSSKAHKAIRQAIV 354

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +++ + A++++P+ +F     ++T + I +        G    +   D+     +   KR
Sbjct: 355 DDNRLVAVISMPSGVFKPYAGVSTGILIFTK----TGHGGTDKVWFYDMKADGFSLDDKR 410

Query: 442 RIINDDQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             + +     IL+ + +      R+  + S ++D +        +        + +K   
Sbjct: 411 APVKESDIPDILERFKNLDKEVERKRTEQSFLVDKQEIIDNDYDLSINKYKEVVYEKVEY 470

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                 +   +         L  LK ++  
Sbjct: 471 PPTSEILADIEALNREIDKNLAELKALLND 500


>gi|226947934|ref|YP_002803025.1| type I restriction modification system M subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843533|gb|ACO86199.1| type I restriction modification system M subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 494

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 82/511 (16%), Positives = 185/511 (36%), Gaps = 65/511 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  ++ L+       + +  +  A          F     Y  ++  +   +        
Sbjct: 35  FLFIKDLDD------NEILAESDAELLGIPFEGMFPSDKQYLRWSKFKNEEAGEMYRIVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I     + ++ +  +  S  + ++    +L KI      +E+           +
Sbjct: 89  QEVFPFIKDIHGDKQSAYSKY-MSDAMFKIPTPLMLSKIVDAIDNLEI----QDKDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P     + DP  GT 
Sbjct: 144 LYEYLLSKVATAGTN--GQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMGTA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++ +  +   +   L  H       G +++     +    M++  ++     
Sbjct: 192 GFLVGAEEYLREKHNDLFLVQGLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF  K   D +AV  +            + K
Sbjct: 247 --NPNIEYKDSLSETNKDSEKYTLVLANPPF--KGSLDYEAVSADILK---------VSK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +EAI
Sbjct: 294 TKKTELLFLALFLRILK----KGGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+     +   KR  I D+  
Sbjct: 348 ISMPSGVFKPYAGVSTAIIIFTKTGT----GGTDKVWFYDMKADGYSLDDKRNPIEDNDI 403

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             +++ + +      R+  + S  +           +          ++      +  + 
Sbjct: 404 PDMIERFNNLDKEEDRKRTEQSFFVPVDEIRENNYDLSINKYKEIEYEEVVYDEPKVILE 463

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
             K      +  +D L+ M++     G+ + 
Sbjct: 464 RVKKLEEEITEGIDELEKMIEVGEENGYKKD 494


>gi|126179042|ref|YP_001047007.1| N-6 DNA methylase [Methanoculleus marisnigri JR1]
 gi|125861836|gb|ABN57025.1| N-6 DNA methylase [Methanoculleus marisnigri JR1]
          Length = 505

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 164/450 (36%), Gaps = 79/450 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RLE      ++  R + + +     + E          +++ ++  +     + R
Sbjct: 36  LIFMKRLEDMDGVEQNRARARGVPYTSVFEEHEE-------CRWSSWKHYPAEQMLVHVR 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           + +  +I S  +  K +F        +  + K  LL +       + +           +
Sbjct: 89  DKVFPFIQSLHNGEKTLFAQ-QMRDAVFMIPKPSLLQEAVALIDEMNITAQN--RDTQGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+L+ +  +        F TPR ++ +   L+           P +   + DP CGT 
Sbjct: 146 IYEYLLSQLSTAG--KNGQFRTPRHIIRMIVELV----------DPDITDRICDPACGTA 193

Query: 218 GFLTDAMNHVADCG-------------------------SHHKIPPILVPHGQELEPETH 252
           GFL ++  H+                              H +       +G + +    
Sbjct: 194 GFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWEKLWSDTFYGFDFDSTMT 253

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + +  +++  +++        +I+   TLSK     +R+   L+NPPF       K ++
Sbjct: 254 RISLMNLMLHGIKA-------PHIELKDTLSKRYTEEERYTVVLANPPF-------KGSI 299

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +K   N  L          +   +L +  +   L +    GG+  +++    LF   +  
Sbjct: 300 DKSDINDSLS------LGTTKTELLLVERMIQLLTI----GGKCGVIVPDGVLF--GSSR 347

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              E+RR LLE + +E IV++P+ +F     ++T + I        + GKV   +     
Sbjct: 348 AHKELRRMLLEENQLEGIVSMPSGIFKPYAGVSTAVLIFVKG---GKTGKVWFYDMEADG 404

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            S+  + K+  I        I++ +  R +
Sbjct: 405 YSL--DDKRTFIDGKGDIPDIIERFRERRD 432


>gi|307155044|ref|YP_003890428.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822]
 gi|306985272|gb|ADN17153.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7822]
          Length = 606

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 168/483 (34%), Gaps = 63/483 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           + L +Y+ S   N     +D     F     R+    LL  +    + I        + +
Sbjct: 123 DGLFAYLRSLQSNTGRERQDLIREVFRDVNNRMISGALLRDVVNKINDIHFDSSEEVN-I 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +SN YE +++       +   +F TPR VV     ++           P +  T++DP C
Sbjct: 182 LSNFYESMLKEMRDAAGDS-GEFYTPRPVVRFMVKVI----------DPKLGETIHDPAC 230

Query: 215 GTGGFLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDL 272
           GT GFL +   ++   C +           G E +P  + +    +L+  +E  D     
Sbjct: 231 GTAGFLIEVYEYLKGQCKADEWAMLQASLSGVEAKPLPYMLAQMNLLLHGVEYPDVEHRN 290

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           S      +   KD     +    L+NPPFG              +  ++    P   + S
Sbjct: 291 SLGQPLTNLGQKD-----QVDIILTNPPFGG------------EEEEKIKNNFPPKMQTS 333

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + ++LF   +   L+  P   GR  IV+ +  LF        ++++  LL    +  IV 
Sbjct: 334 ETALLFFQLIMRLLKKHPKP-GRGGIVVPNGVLF---GDGICAKVKEQLLTQFNLHTIVR 389

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRR 450
           LP  +F   T+I T L         +  G  + I   ++       +  K + + D    
Sbjct: 390 LPNGVFEPYTSIPTNLLFF------DASGSTEEIWYYEVALPEGMKKFTKTKPMQDGDFD 443

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL--DKTGLARLEADITWRKLS 508
           + L  + +RE          + + Y    V    +       D    A   AD   +++ 
Sbjct: 444 ECLVWWNNREENG-------QAWRYNFGAVYEAAKAKAQPHWDAANEALAMADKCSKQIK 496

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            L +      +K +      +   E    + +   + K LK K S             K+
Sbjct: 497 QLEEK-----IKVLEVSNLDFTPVEQ---KKLLEKQIKELKGKISIIQAEEQRYRGVAKE 548

Query: 569 PRA 571
            +A
Sbjct: 549 EQA 551


>gi|331085651|ref|ZP_08334734.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406574|gb|EGG86079.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 687

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/514 (15%), Positives = 176/514 (34%), Gaps = 63/514 (12%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF------YNTSEY 86
            VI   T L  +    +      +E  +            V+V   +       ++    
Sbjct: 214 DVIEQMTYLMFIRDLDDADNLHAKEAAMLGLPHKSIFADEVQVGERTIAGNQLKWSVFHD 273

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-EL 145
             +T   +  +  +  +I +   +  + +  +     I ++    +L KI  +   I E 
Sbjct: 274 FPATKMYSTVQEWVFPFIKNLHGDKDSAYSKY-MGDAIFKVPTPLMLDKIVTSMDSIYEQ 332

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                      ++YE+L+ +  +        F TPR ++ +   ++           P  
Sbjct: 333 MAQLKSADTRGDVYEYLLSKLATAGVN--GQFRTPRHIIRMMVEMM----------DPKA 380

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVA 257
              + DP CGT GFL  A  ++ +                   + HG +++     +   
Sbjct: 381 DEIICDPACGTSGFLVSASEYLKETKKEEVFFNKQNKNHYMNHMFHGFDMDRTMLRIGAM 440

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M+   ++       +  I+   +LS      +++   L+NPPF  K   D D V  +  
Sbjct: 441 NMMTHGVD-------NPYIEYRDSLSDQNSDKEKYSLILANPPF--KGSLDYDTVSADLL 491

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     + K     +LFL      L++    GGR A ++    LF   +     +I
Sbjct: 492 K---------VCKTKKTELLFLALFIRMLKI----GGRCACIVPDGVLF--GSSKAHKDI 536

Query: 378 RRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R+ ++E + +EA++++P+ +F     ++T + I +        G    +   D+     +
Sbjct: 537 RKAIVEENRLEAVISMPSGVFKPYAGVSTAILIFTK----TGHGGTDNVWFYDMKADGLS 592

Query: 437 EGKKRRIINDDQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
              KR  I ++    I++ + +      R+  + S  +  +        +          
Sbjct: 593 LDDKRTEIKENDIPDIIERFRNLDKEVDRKRTEQSFFVTKQEIADNGYDLSINKYKEIEY 652

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   +  +T  +   +     +D L+ ++ 
Sbjct: 653 VPVEYPSSQEIMTDLRELEMKIGEEMDALEQLLG 686


>gi|255261889|ref|ZP_05341231.1| type I restriction-modification system, M subunit [Thalassiobium
           sp. R2A62]
 gi|255104224|gb|EET46898.1| type I restriction-modification system, M subunit [Thalassiobium
           sp. R2A62]
          Length = 512

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 140/423 (33%), Gaps = 61/423 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+         V E+     G  +    F + +            S   +   R
Sbjct: 35  LLFIKRLDDL-----HTVEERKSEDLGIPMQRNIFPEGSDDKGEPYDNLRWSRFKNFEAR 89

Query: 98  NNLESYIASFSDNAKAIFED-----FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             +           + + E+                   LL K+ +    I +       
Sbjct: 90  EMMRIVDEHVFPFLRQMGEEGSSYGTHMKDARLGFSNPNLLAKVVQLLDDIPME----DR 145

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++E+++ +  S        F TPR +++L   L+          +P    T+ DP
Sbjct: 146 DTKGDVFEYMLGKIASAG--QNGQFRTPRHIINLMVNLM----------APTPQDTICDP 193

Query: 213 TCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             GT GFL  +  ++ D                  + HG + +     +    M +  +E
Sbjct: 194 AAGTCGFLVQSGEYLRDHHPKMLRDKDQRAHFHNDMFHGFDFDSTMLRIGAMNMTLHGVE 253

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +           + S   +      R+   L+NPPF    + D  + +            
Sbjct: 254 N------PDVAYRDSLAEEHGADEGRYSLILANPPFAGSLDYDTTSKDLLK--------- 298

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LF+      +      GGRAA+V+    LF   +     +IR+ L+E+ 
Sbjct: 299 --MVKTKKTELLFMALFLRLMRT----GGRAAVVVPDGVLF--GSSKAHKDIRKMLVEDH 350

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++AI+ +P+ +F     ++  + + +        G    +   D+    ++   KR  +
Sbjct: 351 KLDAIIKMPSGVFRPYAGVSCAIVVFTK----TGVGGTDDVWFYDMEADGQSLDDKRTPL 406

Query: 445 NDD 447
            DD
Sbjct: 407 LDD 409


>gi|255284466|ref|ZP_05349021.1| putative type I restriction-modification system, M subunit
           [Bryantella formatexigens DSM 14469]
 gi|255264976|gb|EET58181.1| putative type I restriction-modification system, M subunit
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 162/440 (36%), Gaps = 71/440 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNI 158
           +  +I +  ++  + +  +     I +L    +L K+  +   I ++  +     V  ++
Sbjct: 100 VFPFIKTLHNDKDSAYSKY-MDDAIFKLPTPLVLSKVVDSLDEIYKMMNEIQIADVRGDV 158

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+ +           F TPR ++ +   ++           P     + DP CGT G
Sbjct: 159 YEYLLSKIAQSGRN--GQFRTPRHIIRMMVEMM----------DPSSDEVICDPACGTSG 206

Query: 219 FLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           FL  A  ++ +                   + HG +++     +    M+   ++     
Sbjct: 207 FLVAAGEYLKENRKEEIFFDKQKKDHYMNHMFHGYDMDRTMLRIGAMNMMTHGID----- 261

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  I+   +LS       ++   L+NPPF       K +++ E  +G+L +    + K
Sbjct: 262 --NPFIEYRDSLSDQNPDKDKYSLILANPPF-------KGSLDAESVSGDLLK----VCK 308

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L++    GGR A ++    LF   +     +IR+ ++EN  +EA+
Sbjct: 309 TKKTELLFLALFLRMLKI----GGRCACIVPDGVLF--GSSKAHKDIRKEIVENQRLEAV 362

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +  +     G    +   D+     +   KR  I ++  
Sbjct: 363 ISMPSGVFKPYAGVSTAIIIFTKTE----HGGTDYVWFYDMTADGFSLDDKRTPIAENDI 418

Query: 450 RQI------LDIYVSRENGKFSRMLD-------------YRTFGYRRIKVLRPLRMSFIL 490
             I      LD    R+    S M+               +      + V  P     + 
Sbjct: 419 PDIIGRFKNLDKETERKRTDKSFMVPKQDIVDNGYDLSINKYKEIEYVPVEYPPTSEIMA 478

Query: 491 DKTGLARLEADITWRKLSPL 510
           D   + R E      +L  L
Sbjct: 479 DIREIER-EIGKEMDELERL 497



 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 632 GYEINFNRFF---YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GY+++ N++    Y         +I A+++ +E +I   ++E+
Sbjct: 452 GYDLSINKYKEIEYVPVEYPPTSEIMADIREIEREIGKEMDEL 494


>gi|255527615|ref|ZP_05394477.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296187658|ref|ZP_06856052.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
 gi|255508687|gb|EET85065.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296047615|gb|EFG87055.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
          Length = 498

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 170/451 (37%), Gaps = 81/451 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+       +  R   +    +++  E  +K + +   + +E            
Sbjct: 35  LLFIKRLDDI--DNTNEKRANRIGKAFTSVFPEELMKWSNFKHLDVNEMF------DIVA 86

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I +      +     +    +  + K  LL +  +   GI +           +
Sbjct: 87  QKVFPFIKTMGGENSSF--TTEMKDAVFMIPKPSLLQESVRIIDGINME----DADTKGD 140

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +           F TPR ++ +   L+          +P     + DP CGT 
Sbjct: 141 LYEYLLSKLAVSGVN--GQFRTPRHIIRMMVELM----------NPCAEDKICDPACGTA 188

Query: 218 GFLTDAMNHVADCGS-------------HHKIPPILV-----------PHGQELEPETHA 253
           GFL  ++ ++ +  +             H+KI  ++             +G + +P    
Sbjct: 189 GFLVSSLEYILEKYTKPESIFTDEEGVVHNKIGDMMSSEEWEHFRTSMFYGFDFDPSMVR 248

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +    +++  ++       + N+ Q  TLSK      ++   L+NPPF    +K      
Sbjct: 249 IASMNLMLHSID-------NPNMVQNDTLSKRYEEENKYTLVLANPPFKGSIDK------ 295

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                G++ +        +   +LF+  +   L+L    GGR A+++    LF   +   
Sbjct: 296 -----GDISKSLAAGASTTKTELLFMKLINRILDL----GGRCAVIVPDGVLF--GSTKA 344

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
             +IR+ L+EN+ +E ++++P+ +F     ++T + + +        G+ + +   D+  
Sbjct: 345 HKDIRKNLIENNALEGVISMPSGVFKPYAGVSTAVLMFTKG------GETEKVWFYDMTA 398

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              +   KR  I+D     I++ +   +  K
Sbjct: 399 DGFSLDDKRNPIDDSDIPNIIESWKKVKKDK 429


>gi|317181780|dbj|BAJ59564.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 543

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/516 (14%), Positives = 170/516 (32%), Gaps = 61/516 (11%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFKQEFPNQTIQDYKDFNEEEKEDFFLTLIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L++     S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTKSTDETTIALFESVSQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + S+      ++ 
Sbjct: 151 EESKRANFTRALLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQIG--------TN 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++       ML   L  +      K   +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLK-----MLKLNLILNNLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPPF   +  +   + +   +  LG   P +PK     M              +  G+
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIPKNDKSKMPIYTLFFQHCLNMLSDNGK 367

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AIV+ +  +        E++I R L++  L+  ++ +P+ +F  T     +       +
Sbjct: 368 GAIVVPTGFISAKS--GIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVIFFKKTPS 425

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFG 474
                +V LI+A+ L         K+  + +     IL  + ++ +   F  ++ +    
Sbjct: 426 A---NEVVLIDASKLGEEYTENKNKKTRLRESDIDLILKTFQNKTQKADFCALVSFDEII 482

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            +   +      +       +++ E +   ++ S  
Sbjct: 483 EKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSE 518


>gi|322379880|ref|ZP_08054167.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5]
 gi|321147715|gb|EFX42328.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5]
          Length = 303

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 108/302 (35%), Gaps = 41/302 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
             T +   L   IW  A+ L G     DF + +L   L R L   L    +   +K    
Sbjct: 11  NSTANRNHLFKAIWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDAS 70

Query: 59  ----YLAFGGSNIDLESFVKVAGYSFYNTSEYS---------LSTLGSTNTRNNLESYIA 105
                L    +N+  E  ++  G+    +  +          L       T N++   I 
Sbjct: 71  FNYAKLKDEKANLAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNIE 130

Query: 106 SFS------DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
           + S      +N K +F D D +S         K   + ++ +  + +++ H       V 
Sbjct: 131 ASSLQSEAQENFKGLFADLDMNSDKLGNGVKSKNENIARLLEGVASMQISHYQKNGIDVF 190

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE L+  + S   +   +F TP +V  L T L++    ++ K        +YDP CG
Sbjct: 191 GDAYEFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKSINK--------VYDPCCG 242

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      +                GQE+   T+ +C A ML+  ++ D      K 
Sbjct: 243 SGSLLLQFAKILGVENIKQG------FFGQEINQTTYNLCRANMLLHNVDYDKFHINYKM 296

Query: 276 IQ 277
             
Sbjct: 297 QN 298


>gi|53715506|ref|YP_101498.1| type I restriction-modification system DNA methylase [Bacteroides
           fragilis YCH46]
 gi|52218371|dbj|BAD50964.1| type I restriction-modification system DNA methylase [Bacteroides
           fragilis YCH46]
          Length = 271

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 41/311 (13%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
                +       K       F+ T     + G+L  +    + I+  P    D  +   
Sbjct: 1   MAIKSLDDNEPKLKNALPQQIFTKTAL---EPGVLKSVVDEINKID--PQKFNDHDLIGR 55

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE  ++ F     +   +F TP  +V L  +L+   D            T+YDP CG+G
Sbjct: 56  VYESFLQAFSINADKEEGEFYTPHSIVELIASLIEPFDG-----------TVYDPCCGSG 104

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G    A   +   G + K   +   +GQE EP T+ +    + IR +            +
Sbjct: 105 GMFVQAAIFIEAHGGNTKAVNV---YGQESEPATYRLAKMNLAIRGI------SYHLGDR 155

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             ST S D     +F   ++NP    K   +    E + +       G G+P  S+ +  
Sbjct: 156 AVSTFSDDQHKELKFDNTMANP---LKKYAEYGGFETDPRWQ-----GYGVPPTSNANYA 207

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           +++H+ NKL +     G A  +L++  L +         IR+ L+E+D +EAI+  P ++
Sbjct: 208 WILHILNKLNV---SCGIAGFLLANGALGDNDTQG----IRKQLIESDKVEAIIVSPRNM 260

Query: 398 FFRTNIATYLW 408
           F+ T+I++   
Sbjct: 261 FYSTDISSVTL 271


>gi|163858307|ref|YP_001632605.1| type I restriction modification enzyme M subunit [Bordetella petrii
           DSM 12804]
 gi|163262035|emb|CAP44337.1| type I restriction modification enzyme M subunit [Bordetella
           petrii]
          Length = 492

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 135/374 (36%), Gaps = 57/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  +  + Y     S +  S           E  I   +++     +        
Sbjct: 40  DDKEQEWELTQSSYRSPLQSRFRWSNWAKDPEGMTGEELIDFVNNDLFPALKQLATKAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + +++YE ++    S 
Sbjct: 100 SAQGRVIGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNSSSDRHLFNDVYEKILSDLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      +L           P +  ++ DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTQFIVDIL----------DPKLGESILDPACGTGGFLTCAIEHLKK 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSK 284
                    +L    HG E +P  H + +  M++  +      D+   I+  +T     K
Sbjct: 208 QVKTPDDNRLLQENIHGVEKKPLPHMLAMTNMMLHGI------DVPTRIRHDNTLSRPFK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +EK        R      + +D  M  + HL  
Sbjct: 262 DYGPRDRVDIIITNPPFGG---MEEDGIEKNFLAKHQTR------ETADLFMALITHLLK 312

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
                    GRAA+VL    LF       ++ ++R LLE   +  IV LP  +F   T+I
Sbjct: 313 H------DTGRAAVVLPDGFLF---GEGVKTTLKRELLEEFNLHTIVRLPKGVFAPYTSI 363

Query: 404 ATYLWILSNRKTEE 417
           AT +         +
Sbjct: 364 ATNILFFEKGGPTQ 377


>gi|302035529|ref|YP_003795851.1| type I restriction endonuclease, M subunit [Candidatus Nitrospira
           defluvii]
 gi|300603593|emb|CBK39923.1| Type I restriction endonuclease, M subunit (modular protein)
           [Candidatus Nitrospira defluvii]
          Length = 647

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 206/632 (32%), Gaps = 98/632 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFTLLRRLECALEPTRSAVREK----- 58
            S  SL+ F+    + +      +   + +  L + L  R+  A E       E      
Sbjct: 15  ASTQSLSAFVKSICDVMRRSNCASAL-QYVPELTWILFLRILDAQEARDQEAAEAVGASF 73

Query: 59  -------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLE 101
                  Y     +    ++     G+      +       +               +L 
Sbjct: 74  APALRSPYRWQDWAAPPPKNEADKPGHPKTPEGKLFGWKRQALFAAGDGKLFDFINKDLL 133

Query: 102 SYIASFSDNAK------------AIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPD 148
            ++ S   + +             I      +    R++    L  I      I + H D
Sbjct: 134 PHLHSLDLDPRTNLPRSGATPKQRIIGRIMTAVERVRVDSESNLRDILDKVDEISIDHLD 193

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +S +YE L+ + G + +     F TPR+V+      +           P + +T
Sbjct: 194 DQHFFTLSQVYEDLLLKMGEK-NSDGGQFFTPREVIRAMVHTV----------DPSLGQT 242

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLIR 262
           +YDP CGTGGFL  A  H+A           L         G+E E     + +A +++ 
Sbjct: 243 VYDPCCGTGGFLAIAYEHIARKLGKRANSTDLDTLKHDTFFGREKENLVFPIALANLVLH 302

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            ++       +   ++ +  +      ++F   L+NPPFG K  KD              
Sbjct: 303 GIDRPNLWHGNALTKRATYAALFEQAPRQFDVILTNPPFGGKEGKDAQKN---------- 352

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  + S   +LFL  +  +L       G  A+VL    LF     S   E +R L+
Sbjct: 353 ----FAFETSATQVLFLQDILAEL----APNGTCAMVLDEGLLFR-TNESAFVETKRKLV 403

Query: 383 ENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW--------- 431
           +   + AIV+LP  +F      + T L   +  K      K Q I   DL          
Sbjct: 404 DECDLWAIVSLPGGVFSTAGAGVKTNLLFFTKGK------KTQRIWYYDLSSVKVGKKTP 457

Query: 432 -TSIRNEGKKRRIINDDQR--RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            T           + DD      ++  + + E+   +R   Y     +R       R S+
Sbjct: 458 LTLAHFGFAPNGTLLDDAALPASLVAEWRADESNSGTRFPSYARLLPQRGTPKGESRYSW 517

Query: 489 ILD-KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES---FVKESIKSNE 544
            +D     A+   ++             +  LK  ++++  +   E     ++  I+  +
Sbjct: 518 TVDFAARRAKAREEMQPLMDGAAKIKAEVMDLKERLKRLRKHKAGEEALAALEVQIREKD 577

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
                +++  + I A +      +P A  V D
Sbjct: 578 KAARDLESQAAAIDAAVFDLKAVNPNAVTVVD 609


>gi|159901787|ref|YP_001548032.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894826|gb|ABX07904.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 571

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 91/425 (21%), Positives = 155/425 (36%), Gaps = 60/425 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAF- 62
           +  +L + +W+  + L  D       +    L     LR ++  +E  R           
Sbjct: 11  TNETLRSNMWRACDILRRDNNVGGVMQYTEHLAWLLFLRFMD--MEEKRRVDLALLNEMP 68

Query: 63  ------GGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSDNA 111
                 G  + D     E+  + +           L    +T T ++L   IA  FSD +
Sbjct: 69  YHPVLHGDLSWDFWASPEALERRSAPELIQFVRGRLLPGLATLTGSSLARTIAGIFSDES 128

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                D +    +        L  + +  + I    D+     +S  YE L+ R  S  +
Sbjct: 129 TG---DQNVVRAVPVCASGYNLKDVLEIINSIHFELDS-DLFTISLFYEDLLERMSS-EN 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA---MNHVA 228
             A +F TPR V+     L+          +P +  T+YDP  G+ GFL  A   M   A
Sbjct: 184 RTAGEFHTPRAVIRFMVELM----------APQIGETVYDPAYGSAGFLVQAFLFMQPFA 233

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                H         G E +  +  +    M++  + +      +   +     S    +
Sbjct: 234 RTIEEHTSLHEQTFFGIEKKALSALLGTMNMVLHGVNAPKLLRANTLEE-----SMQGDS 288

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G+R+   L+NPPFG          E  H             K +   +LFL H+  KL+ 
Sbjct: 289 GQRYDVVLTNPPFG--------GTEGAHIQQNFA------VKANATELLFLQHIIKKLKR 334

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
            PN   RAAIV+    LF   A    +E+++ LL+   + A+ +LP   F   +++ T +
Sbjct: 335 TPNA--RAAIVVPEGTLFRSGA---FAEVKQDLLQQFHLFAVFSLPPGTFAPYSDVKTAI 389

Query: 408 WILSN 412
             L  
Sbjct: 390 LFLKR 394


>gi|294676867|ref|YP_003577482.1| type I restriction-modification system RcaSBIIIP subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294475687|gb|ADE85075.1| type I restriction-modification system RcaSBIIIP, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 481

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 117/304 (38%), Gaps = 46/304 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++    + I+ + +    +   +IYE L+    +  +  A ++ T
Sbjct: 107 FEDAYNFMKSGQLLRQVINKINEIDFN-NLSERQHFGDIYEQLLNDLQNAGN--AGEYYT 163

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKI 236
           PR V       +           P     + DP CGTGGFLT AM H+         H+ 
Sbjct: 164 PRAVTAFMVERI----------DPRPGEIVMDPACGTGGFLTCAMRHMRARHIRLPEHED 213

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293
                    E +P  H +CV  ML+  +E          ++  +TL++        +R  
Sbjct: 214 AMQRSLRAVEKKPLPHMLCVTNMLLNGIE------EPHFVRHDNTLARPLTSWTRDERVD 267

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG K   ++D +E                +  + + LFL  +   L+     G
Sbjct: 268 IVLTNPPFGGK---EEDGIENNFP----------TFRTRETADLFLALIIRLLK----PG 310

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           GRAA+VL    LF       ++ ++  L+    +  IV LP  +F    +I T L     
Sbjct: 311 GRAAVVLPDGSLF---GEGIKTRLKEHLMAECNLHTIVRLPNSVFKPYASIGTNLLFFEK 367

Query: 413 RKTE 416
               
Sbjct: 368 GTPT 371


>gi|241668320|ref|ZP_04755898.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876853|ref|ZP_05249563.1| type I restriction-modification system protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842874|gb|EET21288.1| type I restriction-modification system protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 481

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/486 (20%), Positives = 178/486 (36%), Gaps = 73/486 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGST 94
             L+ L             + E+Y+          ++    G     +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKGADGKLDVINADSGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAK-------AIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
                L  Y+ SF    +N K       A+FE  D      R+     L  +      + 
Sbjct: 92  FVNKELFPYLKSFKSIDENVKTLKYKIGAVFEYID-----NRVASGHTLRDVINEIDELN 146

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            +        +S IYE+L++  GS+      +F TPR +V     ++          +P 
Sbjct: 147 FNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NPQ 194

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             +T+YDP  GT GFL DA  H+       +           G+E  P ++ + V  M++
Sbjct: 195 AGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLAFLNEETFFGKEKTPLSYVMGVMNMIL 254

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +        S NI + +TL KD   L    R+   L+NPPFG K            + 
Sbjct: 255 HGI-------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGK------------EK 295

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             +    P   K +   +LFL H+   L+L    GGR  +V+    LF  +  +    ++
Sbjct: 296 ATIQTNFP--IKSNATELLFLQHIYKSLKL----GGRCGVVVPEGVLF--QTNNAFKNVK 347

Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           + LLEN  +  IV+LP  +F   + + T +         +R G    I   ++    +  
Sbjct: 348 KELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DREGSTTDIFYYEITPPYK-- 399

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             K + I  +   + L+I+ SR+  + S +++        I    P ++  I  K+ L  
Sbjct: 400 LTKNKPIQFEHFAEFLEIWQSRKLTENSWIINVADIKDYDISAKNPNKIETIEHKSPLEL 459

Query: 498 LEADIT 503
           +     
Sbjct: 460 VNEIKQ 465


>gi|217975327|ref|YP_002360078.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500462|gb|ACK48655.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 540

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 142/418 (33%), Gaps = 65/418 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+       +  R +      +N       +   +S +   +  +        +
Sbjct: 35  LLFIRRLDEL--QRTAERRAQATGIPVANPIFGPDEQALRWSHFKDKDPDVMM---DIVQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +   I +  D     F +      I  +    LL ++ +  S I +           +
Sbjct: 90  NQVFPKIKNLHDE--GSFAE-HMKDAIFMIPSPKLLDQVVQLLSAINMD----DKDTKGD 142

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +           F TPR+++ +   L+           P +  T+ DP  GT 
Sbjct: 143 LYEYLLSKLQQSGVN--GQFRTPRNIIQMMVELM----------QPKLGDTICDPASGTC 190

Query: 218 GFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A+ +V +          + +     +  G + +     +    ML+  +E+    
Sbjct: 191 GFLMAALEYVENRYKQEVNKPANRQHFNNAMFTGFDFDKSMLRIGAMNMLLHGIENPTVL 250

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD---------------------K 309
                  QG    ++      +   L+NPPF    + D                     K
Sbjct: 251 YRDSLQDQGDANIREA-----YSLILANPPFKGSVDFDIIAPDLLRALGKNPTAKKVAPK 305

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              E +    E               +LFL  +   L++    GGRAA+++    LF   
Sbjct: 306 YKTEIDADGVETQVEVKAKGPTEKSELLFLALILRMLKV----GGRAAVIVPDGVLF--G 359

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
           +      IR  L+    +EA+++LP+ +F     ++T + I +   +     KV   +
Sbjct: 360 STKSHKSIREKLINEQKLEAVISLPSGVFKPYAGVSTAILIFTKTNSGG-TDKVWFYD 416


>gi|116250871|ref|YP_766709.1| type I restriction enzyme modification methylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255519|emb|CAK06596.1| putative type I restriction enzyme modification methylase subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 411

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 160/436 (36%), Gaps = 76/436 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVIL---PFTLLRRLECALEPTRSAVREKYLAFG 63
           +A ++   +W+    L        + + +        L+ +      T S  R       
Sbjct: 2   NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRETGSLPR------- 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDNAKAIFEDF 118
             ++     V+  G +       +L TLG+ +TR   +  +      + + + +  + D 
Sbjct: 53  --SMRWADLVQANGLAKLELYRKTLVTLGTVSTRLGKDDALVLPPGENATPDERKRYADA 110

Query: 119 D---------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F +    + +   L  +      ++   +        ++YE L+++   E
Sbjct: 111 RPLPEMVQEIFDNASTFIREPQNLTTLVTAIDELDWFSE--DRDQFGDLYEGLLQKNAEE 168

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
              GA  + TPR ++ L   L+           P     + DP  GTGGFL  A  ++  
Sbjct: 169 TKRGAGQYFTPRVLIELLVRLM----------QPKPGEVIQDPAAGTGGFLIAADRYMRA 218

Query: 230 CGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              ++        +       HG E  P T  + +  + +  ++SD       ++  G T
Sbjct: 219 VTDNYFDLGRKQQEFQKRHAFHGMENVPGTLRLLLMNLYLHNIDSD-------HVDLGDT 271

Query: 282 LSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           LS       R +  L+NPPFG       +D +                  +S   + F+ 
Sbjct: 272 LSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSV-------------TATVSSYQLPFVE 318

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+     GGRAAIV+  + LF    G    ++R+ +++   +  I+ LPT +F+ 
Sbjct: 319 HCIRALQP----GGRAAIVVPDNVLFEDGRG---RQLRQMMMDWCDVHTILRLPTGIFYA 371

Query: 401 TNIATYLWILSNRKTE 416
             + T +  L+  KTE
Sbjct: 372 QGVKTNVIFLTRAKTE 387


>gi|253578028|ref|ZP_04855300.1| type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850346|gb|EES78304.1| type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. 5_1_39BFAA]
          Length = 510

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 167/473 (35%), Gaps = 67/473 (14%)

Query: 5   TGSAASLANFIWKNAED--LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           TG   S  + +W+      L       +          +R L+ A     +   ++    
Sbjct: 12  TGELKSKIDNLWEIFWTGGLTNPLDVIEQMTY---LMFIRDLDDA----DNIHAKEAAML 64

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------LESYIASFSDNAKAIF 115
           G  +  + +     G    + S+   ST                +  +I +   + ++ +
Sbjct: 65  GLPHKSIFAGEIQIGDRKIDGSQLKWSTFHDFPAAKMYSTMQEWVFPFIKNLHGDKESAY 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
             +     I ++    +L KI      I    + +       ++YE+L+ +  +      
Sbjct: 125 SKY-MRDAIFKVPTPLMLDKIVTTMDAIYEQMEQIKSADTRGDVYEYLLSKLATAGVN-- 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR ++ +   ++           P     + DP CGT GFL  A  ++ D     
Sbjct: 182 GQFRTPRHIIRMMVEMM----------DPKADEIICDPACGTSGFLVAASEYLRDKKKQE 231

Query: 235 KIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +            + HG +++     +    M+   +E       +  I+   +LS   
Sbjct: 232 VLFNRQNKEHYMNHMFHGYDMDRTMLRIGAMNMMTHGVE-------NPYIEYRDSLSDQN 284

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              +++   L+NPPF  K   D D V  +            + K     +LFL      L
Sbjct: 285 TDKEKYSLILANPPF--KGSLDYDIVSADLLK---------VCKTKKTELLFLALFIRML 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIAT 405
           ++    GGR A ++    LF   + +    IR+ L+E + +EA++++P+ +F     ++T
Sbjct: 334 KI----GGRCACIVPDGVLF--GSSTAHKAIRKALVEENRLEAVISMPSGVFKPYAGVST 387

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            + I +        G    +   D+     +   KR    ++    I++ + +
Sbjct: 388 AILIFTK----TGHGGTDKVWFYDMKADGFSLDDKRTETKENDIPDIIERFRN 436


>gi|254426343|ref|ZP_05040059.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
 gi|196187757|gb|EDX82723.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
          Length = 494

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 153/438 (34%), Gaps = 57/438 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+  LE T+ + + + L             +   +S++       S       R
Sbjct: 35  LLFIKRLDD-LEVTKES-KARRLGRSVEQPTFAEDEQECRWSYFK--NLDDSDKKLEIVR 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +    +I      A            +  +  A LL  +      I +           +
Sbjct: 91  DQAFPFIKQLGGEAADSPYARHMQDAVFLISSAALLDSVVTQIDQIPME----DRDTKGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  +  +     F TPR ++ L  AL+          +PG    + DP CGTG
Sbjct: 147 LYEYMLSKLSTAGTN--GQFRTPRHIIKLMVALM----------APGPNEIICDPACGTG 194

Query: 218 GFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAGMLIRRLES 266
           GFL  A  +V D                      + HG + +     +    +++  +E 
Sbjct: 195 GFLIGAAEYVRDLKDGEGNDVLNAPGNLAHFNDGMFHGFDFDATMLRIGSMNLMLHGIE- 253

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                      + S         + F   L+NPPF  K   +K  + K+           
Sbjct: 254 -----QPAIEARDSLSEDHAGVEEAFTMILANPPF--KGSVEKSTIAKDLAKA------- 299

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                    +LF+      L+     GGRAA+++    LF   +      +R+ L+E   
Sbjct: 300 --ISTKKTELLFMALFLRLLK----KGGRAAVIVPDGVLF--GSSKAHKGLRKLLVEAHK 351

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++ ++++P+ +F     ++T + + +    E        +   D+     +   KR+ I 
Sbjct: 352 LDGVISMPSGVFKPYAGVSTAILMFTKVGVESGGSD--FVWFYDMAADGLSLDDKRQPIE 409

Query: 446 DDQRRQILDIYVSRENGK 463
           ++    IL  + SR+  K
Sbjct: 410 ENDIPDILARWQSRDVEK 427


>gi|146279551|ref|YP_001169709.1| EcoEI R domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557792|gb|ABP72404.1| EcoEI R, C-terminal domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 481

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 142/394 (36%), Gaps = 70/394 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESFVKVAGYSFYNTSEY-SLS 89
              L+ ++   +      R++Y       L +     D E        SF N S +  L 
Sbjct: 33  MFFLKIIDDQ-DEALELTRDEYISPIPADLQWRAWAADPEGMTGDELLSFVNESLFPRLK 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            L  T  R  +   +               F      ++   LL ++    +G++ + + 
Sbjct: 92  NLRPTAPRARVIRDV---------------FEDAYNFMKSGQLLRQVINKINGVDFN-NL 135

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
              +   +IYE L+    +  +  A ++  PR V       +           P     L
Sbjct: 136 TERQHFGDIYEQLLNDLQNAGN--AGEYYDPRAVTAFMVQQI----------DPRPGEIL 183

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT AM H+ D       H+          E +P  H +CV  ML+  +E 
Sbjct: 184 MDPACGTGGFLTCAMRHMRDRHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVE- 242

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    ++  +TL++        +R    L+NPPFG K   ++D +E          
Sbjct: 243 -----EPHFVRHDNTLARPLTSWSRDERVDIVLTNPPFGGK---EEDGIENNFP------ 288

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 +  + + LFL  +   L+     GGRAA+VL    LF       ++ ++  L+ 
Sbjct: 289 ----TFRTRETADLFLALIIRLLK----PGGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTE 416
              +  IV LP  +F    +I T L         
Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPT 371


>gi|311109506|ref|YP_003982359.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans
           A8]
 gi|310764195|gb|ADP19644.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans
           A8]
          Length = 492

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/547 (17%), Positives = 180/547 (32%), Gaps = 84/547 (15%)

Query: 5   TGSAASLANFIWKNAED--LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           TG+  S  + IW       +    +  +          ++RL+        +VREK  A 
Sbjct: 3   TGTIKSQVDRIWDAFWSGGISNPLEVIEQMTY---LLFIKRLDEI-----HSVREKKAAR 54

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-----RNNLESYIASFSDNAKAIFED 117
            G  I+   F        ++        LG   T      N +  +I +  +        
Sbjct: 55  LGKPIEEPVFSPEQQNLRWSV----FKQLGDAATLYDLVANQVFPFIKTLGEADSTYATH 110

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                    +    LL K+      I +           ++YE+++ +  S        F
Sbjct: 111 --MKDARFTIPSPALLAKVVDMLDAIPMD----DRDTKGDLYEYMLGKIASAG--QNGQF 162

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234
            TPR ++ L   ++          +P    T+ DP CGT GFL  A  ++     +    
Sbjct: 163 RTPRHIIKLMVEMM----------APKPADTICDPACGTAGFLVAAAEYLQHHHRNEIYT 212

Query: 235 -----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K       HG + +     V    ML+  +E+    +      + S         
Sbjct: 213 DQASAKRFNHDTFHGFDFDSTMLRVGSMNMLLHGVENPAIEN------RDSLSESHAGVE 266

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   L+NPPF          ++ E    +L R    + K     +LFL      L+  
Sbjct: 267 GQFSLILANPPFAGS-------LDYESTAQDLQR----MVKTKKTELLFLALFLRLLKP- 314

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GGRAA+++    LF   +      +R+ L+E   ++AI+++P+ +F     ++T + 
Sbjct: 315 ---GGRAAVIVPDGVLF--GSSKAHKTLRQMLVEEQKLDAIISMPSGVFRPYAGVSTAVM 369

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN-----DDQRRQILDIYVS----- 458
           + +        G    +   D+     +   KR  ++     +D    IL  + +     
Sbjct: 370 LFTK----TNSGGTDRVWFYDMRADGYSLDDKRNELDHAKHENDNLPDILSRWQNQSREA 425

Query: 459 -RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            RE  + S ++           +        + +          I+  K      +    
Sbjct: 426 GRERTEQSFLVPKDEIAANDYDLSINRYKQVVHEVIEYESPAKLISDLKALETEIAKGTA 485

Query: 518 ILKPMMQ 524
            L+  ++
Sbjct: 486 ELEEWLR 492


>gi|229826015|ref|ZP_04452084.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC
           49176]
 gi|229789757|gb|EEP25871.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC
           49176]
          Length = 500

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/542 (16%), Positives = 194/542 (35%), Gaps = 82/542 (15%)

Query: 5   TGSAASLANFIWKN--AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           TG   +  + +W    A  L    +      VI   T L  +    E      +E     
Sbjct: 3   TGELKNKIDSLWDIFAAGGLVNPLE------VIEQITYLMFIHDLDESDNLKAKESEMLG 56

Query: 59  --YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
             Y +     I +   V       ++      +    +  +  +  +I +   +  + + 
Sbjct: 57  LPYQSIFSDEIKIGDRVIAGAQLKWSVFHDFPADRMYSVMQEWVFPFIKTLHSDKNSAYS 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            +     I +L    +L K+  +   I ++  +     V  ++YE+L+ +          
Sbjct: 117 KY-MDDAIFKLPTPLVLSKVVDSLDEIYKIMNEIQTIDVRGDVYEYLLSKIAQSGLN--G 173

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TPR ++ +   L+          +P     + DP CGT GFL  A  ++ +      
Sbjct: 174 QFRTPRHIIRMMVELM----------NPSADEVICDPACGTSGFLVAAGEYLKENRKEEI 223

Query: 236 IPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                        + +G +++     +    M+   ++       +  I+   +LS    
Sbjct: 224 FYNRQKKEHYMNHMFYGYDMDRTMLRIGAMNMMTHGID-------NPIIEYRDSLSDWNS 276

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPF       K +++ +  +G+L +    + K     +LFL      L+
Sbjct: 277 DKDKYSLVLANPPF-------KGSLDADSVSGDLLK----VCKTKKTELLFLTLFIRMLK 325

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY 406
           +    GGR A ++    LF   +     +IR+ ++EN  + A++++P+ +F     ++T 
Sbjct: 326 I----GGRCACIVPDGVLF--GSSKAHKDIRKEIVENHRLVAVISMPSGVFKPYAGVSTA 379

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RE 460
           + I +  +     G    +   D+     +   KR  ++D+    I   + +      R+
Sbjct: 380 ILIFTKTE----HGGTDNVWFYDMTADGFSLDDKRSPVSDNDIPDITQRFKNLDKESDRK 435

Query: 461 NGKFS------RMLDYRT----FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
               S       ++D         Y+ ++              G+  LE++I  +++  L
Sbjct: 436 RTDKSFMVPKKEIVDNDYDLSINKYKEVEYEAVEYPPTSEIMAGIRELESEIG-KEMEEL 494

Query: 511 HQ 512
            +
Sbjct: 495 AR 496


>gi|313681903|ref|YP_004059641.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154763|gb|ADR33441.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 478

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 165/451 (36%), Gaps = 73/451 (16%)

Query: 38  FTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST- 90
              L+  +        L+    +     L +     D E     A   F NT  +     
Sbjct: 35  MIFLKIFDDKDIEMELLDDNYVSPIPAELQWRNWASDDEGLTGEALLVFINTELFPTLQK 94

Query: 91  --LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             LG+TN R  L   +               F      ++   ++ ++    + +  +  
Sbjct: 95  LALGTTNKRAILVREV---------------FEGNNNYMKSGTIIRQVINKLNEVNFN-S 138

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    +  +IYE +++   S     + +F TPR + +  T  +           P +   
Sbjct: 139 SEDRHMFGDIYETILKELQSAG--DSGEFYTPRAITNFITDRV----------DPKLGEI 186

Query: 209 LYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           ++DP CGTGGFLT A+ H+          ++       G EL+P  H + +  +++  +E
Sbjct: 187 VFDPACGTGGFLTSAIEHIRQKEVKNIDDRLTLQKSIKGVELKPLPHMLALTNLVLHDIE 246

Query: 266 -SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +   D + + +  S   KD     R    L+NPPFG       D +E           
Sbjct: 247 VPNIEYDDALSKELSSITQKD-----RVDVILANPPFGGNVT---DGMEMNF-------- 290

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P + +  + + LFL+ +   L+     GGRA IVL    L        ++ IR+ LLE+
Sbjct: 291 -PMIYRTKESADLFLILIIQYLK----DGGRAGIVLPDGSL---TGEGVKARIRQKLLED 342

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-KKRR 442
             +  I+ LP  +F    ++AT L   +  +        + I   +    +  +   K  
Sbjct: 343 CNLHTIIRLPNSVFQPYASVATNLLFFTKGEP------TKEIWYYEHQLPVGQKAYNKTN 396

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            I   +   I   + +R   + +  +D  T 
Sbjct: 397 PIQLKEFDPIKAWWDNRLESEQAWKVDIETI 427


>gi|154244736|ref|YP_001415694.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
 gi|154158821|gb|ABS66037.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
          Length = 710

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 95/532 (17%), Positives = 178/532 (33%), Gaps = 62/532 (11%)

Query: 38  FTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLST 90
              L+ ++      E       E Y +          +      + G    +      + 
Sbjct: 49  LMFLKFVDDMERVHEDEAVLAGETYRSLIDPPYRWRDWASDSAGITGPDLLSFINGEQTV 108

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPD 148
                    L +Y+ S   N +        S+    L        + ++   +  ++H D
Sbjct: 109 RADGTKGPGLFTYLRSLRGNGEGRQRRDVVSAVFRDLRNYATSGYVLRDVINLVNDIHFD 168

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +  D + +  +YE L+R       +   +F TPR VV     ++           P +  
Sbjct: 169 STEDIQTLGRMYETLLREMRDAAGQ-NGEFYTPRPVVRFMVQVI----------DPKLSE 217

Query: 208 TLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+ DP CGTGGFL  A +H+    D     +I       G E       +    +L+  L
Sbjct: 218 TVLDPACGTGGFLAAAFDHMKPSADTVEKREILQRSTLRGGEDSSLPFLLAQMNLLLHGL 277

Query: 265 ES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           E+ D     +   +      +D     R    L+NPPFG            E + G L  
Sbjct: 278 EAPDIEFGNALRFKLTEIGERD-----RVEVILTNPPFGG-----------EEEAGILTN 321

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F P   + ++ ++LFL  +  +L+    G GRA +V+ +  LF     +    I+  LLE
Sbjct: 322 F-PDDRRTAETALLFLQLIMRRLKR--GGHGRAGVVVPNGILFGDGIAA---RIKADLLE 375

Query: 384 NDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS----IRNEG 438
              +  IV LP   F   T+I T +         +  G    I     W       R + 
Sbjct: 376 QFNLHTIVRLPEGTFAPYTDIPTNIIFF------DTSGPTGDIW---YWEQPLPGGRRKY 426

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFS-RMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
            K + +  ++    L+ + +R+ G  + ++                + +         A 
Sbjct: 427 SKTQPLLYEELTDCLEWWSARKEGPQAWKVFGPSLIKRDTEGRTIAVDLDLKNPHAKEAN 486

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
               +   + +   Q   L +L  +   +  +    S    +   + A  ++
Sbjct: 487 HRRPVEIIESAVAKQRELLAVLDELRALVGAFDKITSNSPRAKLGDIAPLVR 538


>gi|288573765|ref|ZP_06392122.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569506|gb|EFC91063.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 237

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 93/256 (36%), Gaps = 30/256 (11%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M E   + A+L   N +W  A+ L G    +++  V+L    L+ +  A +   + +   
Sbjct: 1   MAEKKTNGANLGFENQLWAAADKLRGHMDASEYKHVVLGLIFLKYISDAFQSKYAELEAM 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNA 111
                    D + +   A   F+   E     L ++  +       ++    I   +   
Sbjct: 61  KETDYTDPEDRDEYA--AANIFWVPQEARWKRLQNSAKQPTIGKVVDDAMVAIEKENPTL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEV 170
           K +        ++ +      L ++      I L  D      V+  +YE+ + RF +  
Sbjct: 119 KGVLPKDYSRPSLDK----YRLGELIDIIGKIGLGDDESRSKDVLGRVYEYFLGRFAAAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G  +F TPR VV L   ++           P     +YDP CG+GG    +   V + 
Sbjct: 175 GKGGGEFYTPRCVVKLLVGMI----------EPYKG-RVYDPCCGSGGMFVQSERFVEER 223

Query: 231 GSHHKIPPILVPHGQE 246
           G        +  +GQE
Sbjct: 224 GGRLG---DIAIYGQE 236


>gi|94267247|ref|ZP_01290823.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93452077|gb|EAT02763.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 154/461 (33%), Gaps = 68/461 (14%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASF---SD 109
           F    ++ E F             +                    N L   + +     D
Sbjct: 39  FDDREVEWEMFDDAYRSPIPEPLRWRNWAADPEGMTGEKLKDFIDNTLFPGLQNLQPQGD 98

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           + + +     F      ++   LL ++      GI  +        +  +YE +++   S
Sbjct: 99  DYRGVMIRSLFEDAYNYMKSGQLLRQVINKLQEGINFN-KAGERHELGGVYEQILKDLQS 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +  A +F TPR V       +           P +  T+ DP CGTGGFLT A+ H  
Sbjct: 158 AGN--AGEFYTPRAVTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKR 205

Query: 229 DCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +        G E +   H + V  +++  +E+         I+  + L++ 
Sbjct: 206 KHYVKTPQDEATLQRSILGVEKKSLPHLLAVTNLILHGIEN------PDRIKHDNALARP 259

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  +R    ++NPPFG     ++D +E            P   +  + + LFL   
Sbjct: 260 LISWSPKERVEVIVANPPFGG---MEEDGIETNF---------PQAFRTRETADLFLTLF 307

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
            + L+      GRAA+VL    LF       ++ ++  LL    +  IV LP  +F   T
Sbjct: 308 IHLLKPR----GRAAVVLPDGFLF---GEGMKTRLKEKLLAECNLHTIVRLPNGVFNPYT 360

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            I T L   +     E       I   +  +        K + +   + +  +D +    
Sbjct: 361 GIKTNLLFFTKGAPTEA------IWYYEHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEA 414

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +G  +R     T    ++ V +    ++ LD       E  
Sbjct: 415 DGFTARR---ETEQAWKVPVEQIKARNYNLDIKNPYAAEQQ 452


>gi|298248251|ref|ZP_06972056.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
 gi|297550910|gb|EFH84776.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/571 (18%), Positives = 198/571 (34%), Gaps = 79/571 (13%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           +    S+ ++ +  +++ Y+F        +     N  N     I++  ++A   F    
Sbjct: 109 VKDPESDEEITTHKQISQYAFPWLRVLDDTLRVRGNGNNGERIQISTPMEDAYFQFPG-- 166

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                   EK G+L +       I  +  +  + +M +I+E+L+    +        F T
Sbjct: 167 --------EKGGMLERALIQVDNIFKYIGSANEDIMGDIFEYLLSEIEASG--KNGQFRT 216

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--- 236
           PR ++     LL           P     + DP  G+GGFL +++ HV    S   +   
Sbjct: 217 PRHIIRFMIELL----------DPQFNELICDPAAGSGGFLINSIQHVLKKYSEDTVIYE 266

Query: 237 ----------------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                           P      G + +     +    M++  +E       +  +    
Sbjct: 267 WNGTPHRIYGVPPKPYPTPESCTGYDNDRTMVRIGWMNMILHGIE-------NPRMILRD 319

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            LS+ +    R+   L+NPPF  +   D   V  +       R  P         +LFL 
Sbjct: 320 ALSQRMEDQDRYDVVLANPPFAGQ--VDVGDVHPDLPRHPNNRHRP---ITDKSDLLFLW 374

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
                L+     GGRAA++L    LF   + +   E+RR LL  ++++ +++LP  +F  
Sbjct: 375 QTLRILK----NGGRAAVILPEGVLF--GSTNAHKELRRQLLLENIVDGVISLPAGVFSP 428

Query: 400 RTNIATYLWILSNRKTEERRGK---VQLINATDLWTSIRNEGKKRRIINDDQ-------- 448
            T + T + I    K E R G+    + +   D+     +   KRR   ++         
Sbjct: 429 YTGVKTSILIFHKHKGEYRAGQEPVTKSVWFYDVSIEGYSRDAKRRERPEENDLWDAMEK 488

Query: 449 --RRQILDI-YVSRENGKF-SRMLDYRT---FGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             R+ I D  Y   E      R++D      F   R  +   L  S+ L +      +  
Sbjct: 489 WSRQIIEDTKYSKPEIETVRWRLVDEEMLKIFPEYRESLEPELDKSWGLHELFKEFADLP 548

Query: 502 ITW-RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                 L    Q      ++ +  Q      A   V+E   S +  T  +  +   +   
Sbjct: 549 SHHPESLKAYVQERTRPRIEQLYTQALAICEASLRVQERSSSEKVITENITRAVRDLNRV 608

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYE 591
            +A  R+D          G+ +P+      E
Sbjct: 609 FDAAKRRDTETGVSILERGQGLPEFGRKALE 639


>gi|192360754|ref|YP_001981159.1| type I restriction-modification system subunit M [Cellvibrio
           japonicus Ueda107]
 gi|190686919|gb|ACE84597.1| type I restriction-modification system, M subunit [Cellvibrio
           japonicus Ueda107]
          Length = 490

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 137/374 (36%), Gaps = 58/374 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + + E  +  A Y       +  S           E  I   ++N     +        
Sbjct: 40  DDKEQEWELTHADYKSPLQKRFRWSNWAKDPEGMTGEELIDFVNNNLFPALKQLATKAGV 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++            +    + ++IYE ++    S 
Sbjct: 100 SEHGRVIGSVFEDAYNYMKSGTLLRQVINTIEDDVDFNKSNDRHLFNDIYEKILADLQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V       +          +P +  +++DP CGTGGFLT A+ H+  
Sbjct: 160 GN--AGEYYTPRAVTQFIVDTI----------NPQLGESIFDPACGTGGFLTCAIEHLKS 207

Query: 230 CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSK 284
                     L    HG E +P  H + +  M++  +E      +   I+  +T     K
Sbjct: 208 QAKTTADKKRLQKSIHGVEKKPLPHMLAITNMMLHGIE------VPTQIRHDNTLSRPYK 261

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R    ++NPPFG     ++D +EK               +  + + LF+  + +
Sbjct: 262 DYGPRDRVDIIITNPPFGG---MEEDGIEKNFL---------AKHQTRETADLFMALIMH 309

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+      GRAA+VL    LF       ++ ++R LLE+  +  IV LP  +F   T+I
Sbjct: 310 LLK----PTGRAAVVLPDGFLF---GEGVKTTLKRELLEDFNLHTIVRLPKGVFAPYTSI 362

Query: 404 ATYLWILSNRKTEE 417
           AT +         +
Sbjct: 363 ATNILFFEKGGPTK 376


>gi|167761881|ref|ZP_02434008.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC
           43183]
 gi|167700251|gb|EDS16830.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC
           43183]
          Length = 553

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/544 (14%), Positives = 174/544 (31%), Gaps = 54/544 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-- 80
              ++  +I    L + L        +  +S + +K           E+           
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85

Query: 81  -----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                      Y+   +  +  G  +     +S +   ++    IF     ++T   L  
Sbjct: 86  AISPDVPMLEPYHLIAHLWNQQGKGDFDTIFDSTMTDIAELNADIFSTQTTANTKIPLFE 145

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHSME------CYDPSAGTGTLLMALSHQIGEERCTIFS 259

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I     + L+       +   L   ++ D               S D    ++F + +
Sbjct: 260 QDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVS-------PYHKSDDGQQLRQFDFVV 312

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ +             P +P     SM         +       G+ 
Sbjct: 313 SNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKTGKG 370

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +       T 
Sbjct: 371 AIVIPTGFITAKS--GIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSAT- 427

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
               KV LI+A+ L    ++    +++ +NDD+  +I+  +  +E    FS  + Y    
Sbjct: 428 --TDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAVEDFSVAVSYDEIK 485

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         +D   +   E +             + +    + ++I     A  
Sbjct: 486 EKGYSLSAGQYFDIKIDYVDITEEEFNNRMANYKQTLSEQFKES-HRLEEEIMKQLDALQ 544

Query: 535 FVKE 538
           F + 
Sbjct: 545 FNEN 548


>gi|110679502|ref|YP_682509.1| type I restriction enzyme methyltransferase subunit, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455618|gb|ABG31823.1| type I restriction enzyme methyltransferase subunit, putative
           [Roseobacter denitrificans OCh 114]
          Length = 480

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 175/497 (35%), Gaps = 61/497 (12%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L+   +          + Y     +++  +S+         +  +        T 
Sbjct: 33  LFLKYLDDMEQEREDEAELEGKDYTPTLPNDMRWKSWASPKNPDGTDRKDVLTGEDLITF 92

Query: 96  TRNNLESYIASFSDNA------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               L   +  + ++A      +    +  FS    +      L  + +   G+E +   
Sbjct: 93  VNTELFPTLKKYREDATSPDTIEYKIGEI-FSEITNKFRSGYSLRDVLEIVDGLEFNTQE 151

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +S++YE  I+R G+       ++ TPR ++     ++           P +  T+
Sbjct: 152 AK-HELSDLYESRIKRMGN-AGRNGGEYYTPRPLIRAMIKVV----------DPKIGETV 199

Query: 210 YDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           YD  CG+ GFL +A  H+       S +        +GQE +   + + +  M++  + +
Sbjct: 200 YDGACGSAGFLCEAYAHMLTTDISASDYSTLQTRTFYGQEKKSLAYIIGIMNMILHGITA 259

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              R  +   +       D+    R    L+NPPFG              +  E+ +  P
Sbjct: 260 PNIRRTNTLTEN----VMDIQEKDRHDVILANPPFGSG------------ERPEVQQNFP 303

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K  + + LF+ H   KL      GGRAA+V+ ++ L NG A +    +RR LLE   
Sbjct: 304 --IKSGEMAYLFMQHFIRKLRA----GGRAAVVIKNTFLSNGDAAA----LRRELLETCD 353

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  ++  P  +F    + T +      +   +           L         K   + D
Sbjct: 354 LHTVLDCPAKVFQGAGVKTVVLFFEKGRKTRKT------WYYAL--DPGRSLGKGSPLRD 405

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           D+  + L++  ++ +   S  +           +   ++  F  ++  L   E  I    
Sbjct: 406 DELAEFLELQKTKADSPKSWTVAREDIDAE--TMDMSVKNPFAPEEAPLRSPEEIIEDML 463

Query: 507 LSPLHQSFWLDILKPMM 523
                 +  L+ ++ M+
Sbjct: 464 ARDKETAAILEDIRGML 480


>gi|91203220|emb|CAJ72859.1| similar to type I restriction modification enzyme M chain
           [Candidatus Kuenenia stuttgartiensis]
          Length = 484

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 158/446 (35%), Gaps = 61/446 (13%)

Query: 39  TLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-S 93
             L+ L+   E  +    E     Y          E +    G         +L+     
Sbjct: 33  LFLKYLDD-FEKDKKTAAELAGKYYEGIIDKQYKWEVWAVPKGKDGKIDHHKALTGDDLK 91

Query: 94  TNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
               + L  Y+  F      +D  +    +  FS    +++    L ++      +    
Sbjct: 92  DFVDHKLFPYLKKFKTSAESADTIEYKVGEI-FSELKNKIQSGYNLREVINRIDELRFR- 149

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  MS++YE+ I+  G+       ++ TPR ++     ++          +P +  
Sbjct: 150 SHAEKHEMSHLYENKIKNMGN-AGRNGGEYYTPRPLIKTIVKVV----------APTIGN 198

Query: 208 TLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +YD    + GFL +A  ++           +       +G+E +   + +    M++  
Sbjct: 199 KVYDGAVASAGFLAEAFEYLKTSKNLTTKDAETLQKRTFYGKEKKSLAYIIGTMNMILHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+      +   +       D+    R+   L+NPPFG K   ++  V++         
Sbjct: 259 IEAPNIVHTNTLTEN----MADIQEKDRYDVILANPPFGGK---ERTEVQQNF------- 304

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 K  + + LFL H    L+     GG+A +V+ ++ L N    S    +R+ LLE
Sbjct: 305 ----PIKTGETAFLFLQHFIKILKA----GGKAGVVIKNTFLSNTDNAS--VSLRKLLLE 354

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  +  ++ LP   F    + T +               Q +    L  ++  +  K   
Sbjct: 355 SCNLHTVLDLPGGTFTGAGVKTVVLFFEKGVP------TQNVWFYQL--NLDRKLGKTNP 406

Query: 444 INDDQRRQILDIYVSRENGKFSRMLD 469
           +N++   + +++  ++ N + S  ++
Sbjct: 407 LNENDLAEFVELQKTKANSENSWSVN 432


>gi|332142754|ref|YP_004428492.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332142824|ref|YP_004428562.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552776|gb|AEA99494.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552846|gb|AEA99564.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 548

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 148/434 (34%), Gaps = 59/434 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS--TLGSTN 95
              +RRL+            +         ++E  +       Y  S++      +    
Sbjct: 35  LLFIRRLDEI-------HTARVKNALVMETEIEKPIFGTEQDSYRWSKFKNQDPQVMFEL 87

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            R+ +  +I + +      F        I  +  AGLL ++      I++          
Sbjct: 88  VRDKIFPFIKTINGE-DTTFAK-HMRDAIFMVPTAGLLDRVVTMIDKIDMD----DRDTK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+++ +  S  +     F TPR ++ +   +     D            + DP  G
Sbjct: 142 GDLYEYMLSKLQSSGTN--GQFRTPRHIIQMMVQMTAPKLDG------NKSDVICDPASG 193

Query: 216 TGGFLTDAMNHVADC--GSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A  +V +   G+  +       H Q     + +     +    +++  +E   
Sbjct: 194 TCGFLMAAEEYVRNTQGGALMRPENSKHFHNQMFNAYDFDQHMLRIGAMNLMLHGVEHPV 253

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-------------KE 315
                    QG    KD     +F   L+NPPF      D  A +              +
Sbjct: 254 VEYRDSLSDQGEHNIKD-----KFTLILANPPFKGSVSYDDLAPDLLTALGKTPKKATAK 308

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            +  E G             +LFL  +   L+     GGRAA+V+    LF   +     
Sbjct: 309 TETDEEGNKKKKKGPSEKTELLFLALILRMLQP----GGRAAVVVPDGVLF--GSTKSHK 362

Query: 376 EIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           EIR+ L+E   +EA+V+LP+ +F     ++T +   +        G    +   D+    
Sbjct: 363 EIRKTLVEEHKLEAVVSLPSGVFKPYAGVSTAILFFTK----TNDGGTDNVWFYDMQADG 418

Query: 435 RNEGKKRRIINDDQ 448
            +   KR  +  +Q
Sbjct: 419 FSLDDKRTPLIKEQ 432


>gi|297570526|ref|YP_003691870.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926441|gb|ADH87251.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 498

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 162/494 (32%), Gaps = 77/494 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGG 64
           +++  I    + +  D          G+  L     L+  +         V  +      
Sbjct: 2   TISTTIKSIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDDR------EVEWELFDDHY 53

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDFS 121
            +   E        ++    E            N L   + +     D+ + +     F 
Sbjct: 54  RSPIPEPLRW---RNWAADPEGITGEELKDFIDNTLFPGLQNLQPRGDDYRGVVIRSVFE 110

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                ++   LL ++                  +  +YE +++   S  +  A +F TPR
Sbjct: 111 DAYNYMKSGQLLRQVINKLQEGVNFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240
            V       +           P +  T+ DP CGTGGFLT A+ H  +          + 
Sbjct: 169 AVTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRNHYVQTPQDEAIL 218

Query: 241 --VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYC 295
                G E +P  H + V  +++  +E+         I+  + L++        +R    
Sbjct: 219 QRSILGVEKKPLPHLLAVTNLILHGIEN------PDQIKHDNALARPLISWGPKERVEVI 272

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPFG     ++D +E            P   +  + + LFL    + L+      GR
Sbjct: 273 VANPPFGG---MEEDGIETNF---------PQAFRTRETADLFLTLFIHLLKPR----GR 316

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRK 414
           AA+VL    LF       ++ ++  LL    +  IV LP  +F   T I T L   +   
Sbjct: 317 AAVVLPDGFLF---GEGMKTRLKEKLLAECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGA 373

Query: 415 TEERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQI------LDIYVSRENGKFSR 466
             E       +   +       ++  K + +   + + +I       D + +R   + + 
Sbjct: 374 PTEA------VWYYEHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFAARRETERAW 427

Query: 467 MLDYRTFGYRRIKV 480
            +       R   +
Sbjct: 428 KVPAEQIKARNYNL 441


>gi|58616450|ref|YP_195579.1| Type I restriction-modification system (specificity subunit)
           [Azoarcus sp. EbN1]
 gi|56315912|emb|CAI10555.1| Type I restriction-modification system (specificity subunit)
           [Aromatoleum aromaticum EbN1]
          Length = 540

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 159/468 (33%), Gaps = 78/468 (16%)

Query: 36  LPFTLLRRL----ECALEPTRSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLS 89
           L F     L    +   E     ++  Y +   S+  L + +     G +      +  S
Sbjct: 33  LSFLFFFYLVEGIDAENEARAKVLKTPYESLFKSSWTLRNPLNALAKGETTIPRDRFRWS 92

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-----E 144
              +  +   L  ++    D   A F +   +  +  +  A L+       + +      
Sbjct: 93  VWATALSGEPLVRFLR---DEVFAFFTEMAGNGAVNFMHGARLVIDEPTVLNQVVTLVDG 149

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LH D        +++EH++R+           F TPR ++     ++           P 
Sbjct: 150 LHLDRADADTKGDLFEHVLRQIKQAG--ELGQFRTPRHIIRAIVEII----------DPK 197

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS--------------------------HHKIPP 238
           +  T+YDP  GT GFL  A NH+    S                                
Sbjct: 198 IGETIYDPAAGTAGFLVAAYNHIRLANSSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQ 257

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCL 296
                G +++P+   +    + +R L +      +          K       + +H  L
Sbjct: 258 SKTFFGNDVDPKMVRLATMNLTLRGLPNVHILLRNVLTTTLDNERKADLCLPQEGYHVVL 317

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  +   DKD +  + K G            +   +LFL ++ + L      GGR 
Sbjct: 318 ANPPFSGR--VDKDRIVDDVKIG----------TTTATELLFLKYMMDSLRP----GGRC 361

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
            +++    LF   +     E+RR L+EN+ +EA+++LP  +F   + + T +        
Sbjct: 362 GVIVPEGVLF--GSTGAHKELRRQLIENNRVEAVMSLPGGVFQPYSGVKTSVLFFRKG-- 417

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             R   V  ++  +    +  +      I  D    ++  Y  RE  +
Sbjct: 418 -GRTENVLFLHVDNDGYKL--DANHDTPIEADDLPGLVAAYRDREANR 462


>gi|303243808|ref|ZP_07330148.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1]
 gi|302485744|gb|EFL48668.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1]
          Length = 500

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 86/492 (17%), Positives = 166/492 (33%), Gaps = 73/492 (14%)

Query: 17  KNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECA---LEPTRSAVREKYLAFGGSNIDLE 70
              + L  D   +     +  L     L+  E     LE T     E Y           
Sbjct: 13  SACDILRKDDGTSGAMDYMEQLSWLLFLKVFESVEKELEETALMNGENYNPIIDKKYRWS 72

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNA-------------KAIF 115
           ++ K                      +N  +L++ +  F DN              +   
Sbjct: 73  NWAKKDWIGKPKECLKDFVDNVDEEIKNIDDLDNTLVYFIDNILFPHLRSLEGTPEREKI 132

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                  +  +++    L  +      I    D     V+S IYE L+   G+E   G  
Sbjct: 133 ASIFKEISGNKMKSTYNLVDVINKIDNIN-TDDYEDTHVLSQIYEELLLNMGNEAGWG-G 190

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR ++     ++           P +  T++DP  G+ GFL + + ++ +   +  
Sbjct: 191 EFYTPRPIIRFIIKVI----------KPKIGETVFDPFGGSAGFLIETLKYIQEELGNIT 240

Query: 236 IPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           +           +G E +P  + +    M++  +      +  +    G     ++   +
Sbjct: 241 VQENDILMHKTLYGHEKKPFPYLLGTMNMVLHGI---LTPNYYRRNSLGDEDIHNVPESE 297

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   ++NPPFG +   +   V+                KI     L L ++  KL+   
Sbjct: 298 KYDIIITNPPFGGR---ENKKVQDNF-----------PHKIQSTEALALQYIMRKLK--- 340

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLW 408
             GGRA ++L    +  G  G     IR  LL    + AIV+LP  +F      + T + 
Sbjct: 341 -NGGRAGVILPEGQIMFG--GKKFKSIREELLNKFNVFAIVSLPQGVFSQMGAGVKTNIV 397

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                   E+ G  + I   +L      + +    I D+  + +L+   +RE  + S ++
Sbjct: 398 FF------EKTGSTKEIWYYELEGKYTKKQR----IKDEDFKDVLNKIKNREISENSWIV 447

Query: 469 DYRTFGYRRIKV 480
                  R   +
Sbjct: 448 SIDEIKKRDYDL 459


>gi|295110205|emb|CBL24158.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus obeum A2-162]
          Length = 500

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 155/424 (36%), Gaps = 58/424 (13%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              L     ++    +  G   ID         + F     YS+           +  +I
Sbjct: 52  SAMLGLPYQSIFADEVKIGERTIDGAQLKWSVFHDFPADRMYSVIQEW-------VFPFI 104

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
                +  + +  +     I +L    +L K+  +   I +  + +    V  ++YE+L+
Sbjct: 105 KKLHSDKNSAYSKY-MDDAIFKLPTPLVLSKVVDSLDEIYIMMNEIQTADVRGDVYEYLL 163

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +           F TPR ++ +   ++           P     + DP CGT GFL  A
Sbjct: 164 SKIAQSGLN--GQFRTPRHIIRMMVEMM----------DPSSDEVICDPACGTSGFLVAA 211

Query: 224 MNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
             ++ +                   + HG +++     +    M+   ++       +  
Sbjct: 212 GEYLKEKRKEEIFFDKQKKDHYMNHMFHGYDMDRTMLRIGAMNMMTHGID-------NPF 264

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   +LS       ++   L+NPPF       K +++ E  +G+L +    + K     
Sbjct: 265 IEYRDSLSDQNQDKDKYSLILANPPF-------KGSLDAESVSGDLLK----VCKTKKTE 313

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +LFL      L++    GGR A ++    LF   +      IR+ ++EN  +EA++++P+
Sbjct: 314 LLFLALFLRMLKI----GGRCACIVPDGVLF--GSSKAHKSIRKEIVENQRLEAVISMPS 367

Query: 396 DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F     ++T + I +  +     G    +   D+     +   KR    ++    I++
Sbjct: 368 GVFKPYAGVSTAILIFTKTE----HGGTDNVWFYDMTADGLSLDDKRVPTAENDIPDIIE 423

Query: 455 IYVS 458
            + +
Sbjct: 424 RFRN 427


>gi|322804998|emb|CBZ02558.1| type I restriction-modification system,DNA-methyltransferase
           subunit M [Clostridium botulinum H04402 065]
          Length = 485

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 182/501 (36%), Gaps = 65/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  ++ L+       + +  +  A          F     Y  ++  +   +        
Sbjct: 35  FLFIKDLDD------NEILAESDAELLGIPFEGMFPSDKQYLRWSKFKNEEAGEMYRIVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I     + ++ +  +  S  + ++    +L KI      +E+           +
Sbjct: 89  QEVFPFIKDIHGDKQSAYSKY-MSDAMFKIPTPLMLSKIVDAIDNLEIE----DKDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YEHL+    +        F TPR ++ +   L+           P     + DP  GT 
Sbjct: 144 LYEHLLSNISAAGMN--GQFRTPRHIIKMMVELM----------KPTPEDIIVDPAMGTA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL     ++ +  S   +   L  H       G +++     +    M++  ++     
Sbjct: 192 GFLVKLEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 247 --NPNIEYKDSLSETNKDSEKYTLVLANPPF-------KGSLDYEAVSADLLK----VSK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IRR + +N+ +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIADNNKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   T    G    +   D+ +   +   KR  I D+  
Sbjct: 348 ISMPSGVFKPYAGVSTAIMIFTKTGT----GGTDKVWFYDMKSDGYSLDDKRNPIEDNDI 403

Query: 450 RQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             I++ +       +R+  + S  +           +          ++      +  + 
Sbjct: 404 PDIIERFNNLDKEENRKRTEQSFFVPVEEIRENNYDLSINKYKEIEYEEVVYDEPKVILE 463

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
             K      +  +D L+ M++
Sbjct: 464 RVKKLEKEITEGIDELEKMIE 484


>gi|295087099|emb|CBK68622.1| Type I restriction-modification system methyltransferase subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 553

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 77/545 (14%), Positives = 173/545 (31%), Gaps = 54/545 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-- 80
              ++  +I    L + L        +  +S + +K           E+           
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGNVKWETAYENLSDDERMLIQS 85

Query: 81  -----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                      Y+      +  G  +     +S +   ++    IF     ++T   L  
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHSME------CYDPSAGTGTLLMALSHQIGEERCTIFS 259

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I     + L+       +   L   ++ D               S D    ++F + +
Sbjct: 260 QDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVS-------PYHKSDDGQQLRQFDFVV 312

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ +             P +P     SM         +       G+ 
Sbjct: 313 SNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKTGKG 370

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +       T 
Sbjct: 371 AIVIPTGFITAKS--GIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSAT- 427

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
               KV LI+A+ L    ++    +++ +NDD+  +I+  +  +E    FS  + Y    
Sbjct: 428 --TDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAVEDFSVAVSYDEIK 485

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         +D   +   E +             + +    + ++I     A  
Sbjct: 486 EKGYSLSAGQYFDIKIDYVDITEEEFNNRMANYKQTLSEQFKES-HRLEEEIMKQLDALQ 544

Query: 535 FVKES 539
           F   +
Sbjct: 545 FNANA 549


>gi|227889875|ref|ZP_04007680.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849739|gb|EEJ59825.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 517

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 86/524 (16%), Positives = 180/524 (34%), Gaps = 71/524 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLS 89
           I     ++ L+ +    +          Y +     + ++  + V G    ++T +    
Sbjct: 32  ITYLMFIKDLDDSDNRRKKDNILLGLNDYESIFDGEVKIDDDLTVDGDELRWSTFKDFAP 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI------ 143
               +  +  +  +I +  ++ +  +  +        +   GLL K+      I      
Sbjct: 92  EKMFSIVQTEVFPFIKNLKNDEEGSYARY-MKDATFLIPTPGLLSKVVGELDDIYRLMDA 150

Query: 144 ELHPDTVPD----------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           E+  D   +           V  ++YE+L+ +  +        F TPR ++ +   L+  
Sbjct: 151 EVQKDNSKNKEKALIINRGDVRGDVYEYLLGKLSTAGRN--GQFRTPRHIIKMMVELM-- 206

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQ 245
                   +P +   + DP  GT GFL +A   + D                   +  G 
Sbjct: 207 --------NPQVTDKICDPAAGTAGFLVEAAEFLQDKRKEEIFYRKENRHYFHNEMFTGY 258

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +     +    ML   ++       + NI+   +LS+       +   ++NPPF  K 
Sbjct: 259 DTDQTMLRIGAMNMLSHGVD-------NPNIEYQDSLSEQNTDRDEYSLIMANPPF--KG 309

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             D D+V K+            + K     +LF+      L++    GGR A ++    L
Sbjct: 310 SLDYDSVSKDLLK---------ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVL 356

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQL 424
           F   +      IR+ ++EN+ +EA++++P+ +F     ++T + I +         KV  
Sbjct: 357 F--GSSKAHKSIRKEIIENNNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWF 413

Query: 425 INAT-DLWTSIRNEGKKRRIINDDQRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            + T D ++        +     D   +   LD  V R+    S M+D +        + 
Sbjct: 414 YDMTADGFSLDDKRTPVKENDIPDIIERFNHLDKEVDRKKTDKSFMVDKKDIVDNDYDLS 473

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                            E  I   +      +  L  LK +++ 
Sbjct: 474 INRYKEIEYKPVEYPPTEEIIAEIEKLDKEANDALQELKALLKD 517


>gi|167628749|ref|YP_001679248.1| type i restriction-modification system, m subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167591489|gb|ABZ83237.1| type i restriction-modification system, m subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 478

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 153/449 (34%), Gaps = 60/449 (13%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +          L     +   + +     Y      +Y        +     ++ I    
Sbjct: 23  DAQYIEQIAWLLFLKAFDYKEQEWELEDDYVPVIPEQYRWRNWAEDDEGITGDALIEHV- 81

Query: 109 DNAKAIFEDFDFSSTIAR--------------LEKAGLLYKICKNFSGIELHPDTVPD-R 153
           +N      + D S    R              ++   LL ++    +  +++ D V    
Sbjct: 82  ENMFRTLRNLDVSDGDPRKFLVRDVMEGVNNFMKSGTLLRQVINKINA-DINFDEVKTAH 140

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           + + IYE +++   S     A +F TPR V                K +P +   + DP 
Sbjct: 141 LFNGIYESMLKDLQSAG--KAGEFYTPRPVTRFIVD----------KVNPQLGEIVLDPA 188

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTGGFLT  ++      +           G E +P    +CV  ++   ++    R  +
Sbjct: 189 CGTGGFLTSVIDRFDIKTADEYRTLQKTIRGIEKKPFPFLLCVTNLIAHGIDVPLIRHDN 248

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                  T + D     +    ++NPPFG   EK             + +  P   + ++
Sbjct: 249 TLR----TPTTDYSLADKVDVIVTNPPFGGAEEK------------AISQSVPAELRNTE 292

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + LFL+H+   L+     GGR  +VL    LF       ++ I++ LLE + +  IV L
Sbjct: 293 TADLFLVHIMALLK----DGGRCGMVLPDGFLF---GTGVKAAIKKKLLEENNLHTIVRL 345

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQ 451
           P D+F   TNI T L   +  K        Q +    L          K + +  +    
Sbjct: 346 PKDVFAPYTNINTNLLFFTKGKP------TQGVWFYRLEMPQGYKHFSKTKPMLYEHFAP 399

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +   + +R+    S+ +           +
Sbjct: 400 VRAWWNNRKESDVSQYVPVEDIIAAEYNL 428


>gi|75675446|ref|YP_317867.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
 gi|74420316|gb|ABA04515.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
          Length = 484

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 155/474 (32%), Gaps = 73/474 (15%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
            + D E  +   GY      +    T  +       ++ +   +D      +        
Sbjct: 40  DDQDQELELTKDGYHSPIPKKLQWRTWAADPEGITGQALLDFVNDELFPALKGLQVSDRP 99

Query: 120 ----------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     F      ++   LL ++    + ++ + +    R     YE L+    S 
Sbjct: 100 GDRRRVVRDVFEDAYNYMKSGQLLRQVVNKITQVDFN-NLDERRHFGEFYEQLLNDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V      ++           P     L+DP CGTGGFL+ A+NH+  
Sbjct: 159 GN--AGEYYTPRAVTAFMVQMI----------DPHPGEILFDPACGTGGFLSCAINHMEA 206

Query: 230 CGSHHKIPPILVPHG---QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285
                      +  G    E +   H +CV  ML+  +E          ++  +TL++  
Sbjct: 207 NYVRTPKQREKMQGGLRAVEKKQLPHMLCVTNMLLHGIED------PSFVKHDNTLARPL 260

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 +R    ++NPPFG K   ++D +E                +  + + LFL  + 
Sbjct: 261 ISWSKDERVDIVVTNPPFGGK---EEDGIENNFP----------TFRTKETADLFLALIV 307

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             L+      GRAA+VL    LF       ++ ++  L+E   +  IV LP  +F    +
Sbjct: 308 RLLK----PDGRAAVVLPDGTLF---GEGVKTRLKEHLMEECNLHTIVRLPNSVFKPYAS 360

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIY----- 456
           I T L         +       I   +       +     R I  +     +D +     
Sbjct: 361 IGTNLLFFEKGAPTKD------IWFYEHRVPEGQKAYSMTRPIRLEHFHGCIDWWGGKAR 414

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             R+    +  +       R   +      +   D      L AD+   +    
Sbjct: 415 KGRKETPQAWKVSAEEIKARGYNLDIKNPHAVADDHGDPETLLADLARAEAETA 468


>gi|94266804|ref|ZP_01290468.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93452526|gb|EAT03115.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 154/461 (33%), Gaps = 68/461 (14%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASF---SD 109
           F    ++ E F             +                    N L   + +     D
Sbjct: 39  FDDREVEWEMFDDAYRSPIPEPLRWRNWAADPEGMTGEKLKDFIDNTLFPGLQNLQPRGD 98

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           + + +     F      ++   LL ++      GI  +        +  +YE +++   S
Sbjct: 99  DYRGVMIRSLFEDAYNYMKSGQLLRQVINKLQEGINFN-KAGERHELGGVYEQILKDLQS 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +  A +F TPR V       +           P +  T+ DP CGTGGFLT A+ H  
Sbjct: 158 AGN--AGEFYTPRAVTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKR 205

Query: 229 DCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                      +      G E +   H + V  +++  +E+         I+  + L++ 
Sbjct: 206 KHYVKTPQDEEILQRSILGVEKKSLPHLLAVTNLILHGIET------PDRIKHDNALARP 259

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  +R    ++NPPFG     ++D +E            P   +  + + LFL   
Sbjct: 260 LISWSPKERVEVIVANPPFGG---MEEDGIETNF---------PQAFRTRETADLFLTLF 307

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
            + L+      GRAA+VL    LF       ++ ++  LL    +  IV LP  +F   T
Sbjct: 308 IHLLKPR----GRAAVVLPDGFLF---GEGMKTRLKEKLLAECNLHTIVRLPNGVFNPYT 360

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            I T L   +     E       I   +  +        K + +   + +  +D +    
Sbjct: 361 GIKTNLLFFTKGAPTEA------IWYYEHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEA 414

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +G  +R     T    ++ V +    ++ LD       E  
Sbjct: 415 DGFSARR---ETERAWKVPVEQIKARNYNLDIKNPYAAEQQ 452


>gi|19881269|gb|AAM00874.1|AF486555_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 93/539 (17%), Positives = 189/539 (35%), Gaps = 70/539 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +    S  +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNASSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKI 236
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+   D     K 
Sbjct: 177 TPRPLIKTMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKSKKA 226

Query: 237 P---------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                           G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EKDKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            ++  +    R   +    +   + ++  L   E  +   + +   Q  +L+ LK +++
Sbjct: 438 WLVSKKELEERNYDLS--AKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK 494


>gi|317488606|ref|ZP_07947149.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831646|ref|ZP_08164863.1| N-6 DNA Methylase [Eggerthella sp. HGA1]
 gi|316912258|gb|EFV33824.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486517|gb|EGC88966.1| N-6 DNA Methylase [Eggerthella sp. HGA1]
          Length = 495

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 153/434 (35%), Gaps = 52/434 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E       + Y +     +   S+   A      T +  L         
Sbjct: 33  LFFLK-IYDAKEEEWEFHDDSYESIIPDRLRWHSWAPDAKDGSALTGDELL-----DFVN 86

Query: 98  NNLESYIASFSDN----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N+L   +A    +     + +     F+     ++   LL ++           +     
Sbjct: 87  NDLFKTLAGLELDQNAPLRQVVVQAAFTDANNYMKDGILLRQVVNAIDESVDFTEYKERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               IYE +++   S  +  A +F TPR V      +L          +P +  ++ D  
Sbjct: 147 AFGEIYEIILKDLQSAGN--AGEFYTPRAVTDFMAEML----------APKLGESVADFA 194

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CGTGGFLT A+  +A   +      +     +G E +   + +C+  ML+  +  D  + 
Sbjct: 195 CGTGGFLTSALKLLAKQVNTPSDQELYSKSIYGIEKKQLPYLLCITNMLLHDI--DNPQV 252

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              N  +          G +F   L NPP+G              +   +    P   + 
Sbjct: 253 FHDNSLEHDVRDYRHKEGGQFDVVLMNPPYGGS------------EKASIQNNFPTALRS 300

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LFL  +  +L+      GR A+++    LF   A   E  I+R LL++  +  +V
Sbjct: 301 SETADLFLALILYRLK----KNGRVAVIIPDGFLFGQDAAKVE--IKRRLLKDMNLHTVV 354

Query: 392 ALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQR 449
            +P  +F   T I T +    N       GK + +    +          K + I  +  
Sbjct: 355 RMPQSVFAPYTPITTNILFFDN------TGKSEGVWFYRMGMPEGYKHFSKTKPIKSEHF 408

Query: 450 RQILDIYVSRENGK 463
            ++ + +  R+  +
Sbjct: 409 NEVREWWNDRKEIE 422


>gi|157415771|ref|YP_001483027.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|19881217|gb|AAM00831.1|AF486546_5 HsdM [Campylobacter jejuni]
 gi|19881257|gb|AAM00864.1|AF486553_5 HsdM [Campylobacter jejuni]
 gi|157386735|gb|ABV53050.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315931059|gb|EFV10034.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 494

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 180/538 (33%), Gaps = 69/538 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILE 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKTMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EKDKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++  +    R   +      +   +K      E   +  +     Q +  ++   + 
Sbjct: 438 WLVSKKELEERNYDLSAK-NPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK 494


>gi|299144864|ref|ZP_07037932.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23]
 gi|298515355|gb|EFI39236.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23]
          Length = 553

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 78/544 (14%), Positives = 178/544 (32%), Gaps = 54/544 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYL-------AFGGSNIDLESFVK- 74
              ++  +I    L + L        +  +S + +K +       A+   + D    ++ 
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSDIAKKLIGDVKWETAYKNLSDDERMLIQS 85

Query: 75  -----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                V     Y+      +  G  +     +S +   ++    IF     ++T   L  
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNAEIFSTQTTANTKIPLFE 145

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDTAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHSME------CYDPSAGTGTLLMALSHQIGEDRCTIFS 259

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I     + L+       +   L   ++ D               S D    ++F + +
Sbjct: 260 QDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLV-------NPYHKSDDGQQLRQFDFVV 312

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ +             P +P     SM         +       G+ 
Sbjct: 313 SNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKTGKG 370

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +       T 
Sbjct: 371 AIVIPTGFITAKS--GIENKILHKIVDDKIVYGCVSMPSNVFANTGTNVSVLFFDKSAT- 427

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
               KV LI+A+ L    ++    +++ +ND++  +I+  +  +E    FS  + Y    
Sbjct: 428 --TDKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAVDDFSVAVTYDEIK 485

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         +D   +   E +             + +    + ++I     A  
Sbjct: 486 KKGYSLSAGQYFDIKIDYVDITEDEFNQRMANYKQTLAEQFAES-HRLEEEIINQLNALQ 544

Query: 535 FVKE 538
           F   
Sbjct: 545 FNVN 548


>gi|205356615|ref|ZP_03223377.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345472|gb|EDZ32113.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 473

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 82/507 (16%), Positives = 171/507 (33%), Gaps = 66/507 (13%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L+      +       + Y +          +         +       +     
Sbjct: 11  LFLKFLDDYETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLLEF 70

Query: 96  TRNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               L  Y+ +F +N    F+  +      F     R+     L ++      I  + + 
Sbjct: 71  VNKELFPYLKNFKNN--DDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKED 128

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+      +F TPR ++     ++           P     +
Sbjct: 129 -EVFALGEVYEKLLKDMGSDGGNS-GEFYTPRPLIKTMVEVI----------DPKPKERI 176

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+            L              G+E  P ++A+ V  
Sbjct: 177 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 236

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++  + S      +   +       D+    ++   L+NPPFG K        EKE   
Sbjct: 237 MILHEISSPNIIKTNTLSK----KITDITEKDKYEVILANPPFGGK--------EKEQIQ 284

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K +   +LFL H+   L+      GR AI++    LF  +  +    ++
Sbjct: 285 ENFP------IKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVK 332

Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN- 436
           + LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  I   
Sbjct: 333 KDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYELIPPY 387

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           +  K + +     ++ L  Y  R+    S ++  +    R   +      +   +K    
Sbjct: 388 KLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNYDLSAK-NPNVKEEKILRT 446

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMM 523
             E   +  +     Q +  ++   + 
Sbjct: 447 SEEILNSLEENLKTQQEYLNELKSILK 473


>gi|298674148|ref|YP_003725898.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287136|gb|ADI73102.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 482

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 85/448 (18%), Positives = 163/448 (36%), Gaps = 49/448 (10%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDT 149
              N  NN    +   +   K +F+  DF S        K  +   I  + S IEL+ + 
Sbjct: 78  DIGNLLNNAFEELEMKNPEIKGVFDSLDFESNELGNVHHKNEIWKSIIDSLSSIELYNEN 137

Query: 150 V-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           + P+     ++                D  TPR + +L   LL    D           T
Sbjct: 138 LEPNYDFERLF----------------DVFTPRKLAYLVVKLLNIDKD----------MT 171

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +Y+P C  G FL  + N++ +C      P     +GQ    E     +  +         
Sbjct: 172 VYEPFCTLGTFLVRSGNYIKECTGEFDEP---YLYGQSPNKEYRLTTMLNLYFNDFFKAQ 228

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            +  +        L++D    ++F   L + P  K W  +        K     RF  G+
Sbjct: 229 VKSGNLIF-NPQFLTEDGDGVRKFDRVLGSYPIIKDWGYEF------AKYDPYRRFSYGV 281

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLI 387
           P    G   ++ H+   L+      G   +++ ++ L        E++I++ +L+ +DLI
Sbjct: 282 PPQKKGDYAYIEHMVASLK----KDGMMGVLVPNNSLSR--TNEKETKIKQLMLKRDDLI 335

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           E++++LP  +   T  +  L I++  K EERR +V  I+A+  +   R     R +I   
Sbjct: 336 ESVISLPPKVLRSTATSYSLLIINKNKREERRNQVLFIDASREYRP-RKTEVTRNVIKYK 394

Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKV-LRPLRMSFILDKTGLARLEADITWR 505
               I+  Y S ++   FS ++           + +    +   ++   +   +A    R
Sbjct: 395 HIDNIVSTYQSFKDEDNFSSVVPIEKIEKHNFSLDVSSYILPEPIESDVINPNDALSRLR 454

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           ++         +I           G+ +
Sbjct: 455 EIQNDKNELINNIHDTYSALNLDKGYDD 482


>gi|224543620|ref|ZP_03684159.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523446|gb|EEF92551.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM
           15897]
          Length = 494

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 162/443 (36%), Gaps = 59/443 (13%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            + L  +I +   + ++ +  F     I ++    LL K+     G+     T    +  
Sbjct: 97  NDELFPFIKNLKGDGESSYARF-MRDAIFKIPTPNLLQKVVTGIEGLN----TEEADIKG 151

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +  +     F TPR ++++   L+           P    T+ DP  GT
Sbjct: 152 DLYEYLLNKLNNSGTN--GQFRTPRHIINMMVNLV----------KPVPTDTICDPAMGT 199

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A  ++ +      +   L  H       G +++     +    ++   ++    
Sbjct: 200 AGFLIGAEEYLREKHEELFLDDKLKEHFNNKMFNGFDMDSTMLRIGAMNLISHYVD---- 255

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              +  I+   +LS+      ++   L+NPPF  K   D + V +   +         + 
Sbjct: 256 ---NPQIEYRDSLSQQNIDENKYSLILANPPF--KGSLDYEVVAENLLS---------VC 301

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LF+      L++    GGR A ++    LF   +      IR+ L+EN+ + A
Sbjct: 302 KTKKTELLFIALFLRSLQV----GGRCACIVPDGVLF--GSSKAHKSIRKELVENNQLHA 355

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++++P+ +F     ++T + + +   T    G    +   D+     +   KR  + ++ 
Sbjct: 356 VISMPSGVFKPYAGVSTAILVFTKTTT----GGTDNVWFYDMKADGLSLDDKRSPVEEND 411

Query: 449 RRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
              I+  Y        R+  + S  +           +        + +K         +
Sbjct: 412 IPDIIHRYEHLDEEKDRKRTEQSFFVPKEEIAENDYDLSINKYKEIVYEKVEYRPTHEIL 471

Query: 503 TWRKLSPLHQSFWLDILKPMMQQ 525
              +         ++ LK +++ 
Sbjct: 472 GDIEALNKEIEESIEELKSLLKD 494


>gi|19881226|gb|AAM00838.1|AF486548_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 179/538 (33%), Gaps = 69/538 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILE 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L +       I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREAINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKTMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EKDKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++  +    R   +      +   +K      E   +  +     Q +  ++   + 
Sbjct: 438 WLVSKKELEERNYDLSAK-NPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK 494


>gi|83647702|ref|YP_436137.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83635745|gb|ABC31712.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 539

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/524 (14%), Positives = 171/524 (32%), Gaps = 74/524 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+           E+     G +++   F        +N  +           +
Sbjct: 52  LLFIRRLDEI-----QRNEERKAQATGESLENPIFSSQEAMLRWNNFKDKDPNEMFDIVQ 106

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +   I +     +  F +      I  +    LL ++ +    I+++          +
Sbjct: 107 NKVFPKIKNLQS--QGSFAE-HMKDAIFMIPSPKLLDQVVQMLDNIDMN----DKDTKGD 159

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  S        F TPR ++ +   L+           P +  T+ DP  GT 
Sbjct: 160 LYEYLLSKLSSAGVN--GQFRTPRHIIKMMVELM----------KPQINDTICDPAAGTC 207

Query: 218 GFLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  ++ ++ +          + K     +    + +     +    ML+  +E+    
Sbjct: 208 GFLMSSVEYIREHYQAELTKADNRKHFNNGLFTAYDFDRHMLRIGAMNMLLHGIENPAVY 267

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE--------------KEH 316
                         +      +   L+NPPF    + D  A +              +  
Sbjct: 268 YRDSLQDHNDANISEA-----YSLMLANPPFKGSVDFDIVASDLLRALGKNPAAKKARVK 322

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +  +               +LFL  +   L+     GGRAA+++    LF   +      
Sbjct: 323 EEEDEDGKKKKKGPTEKSELLFLALILRMLKT----GGRAAVIVPDGVLF--GSTKSHKS 376

Query: 377 IRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IR+ L++   ++A+++LP+ +F     ++T + I +   +     KV   +      S+ 
Sbjct: 377 IRQKLVKEQKLQAVISLPSGVFKPYAGVSTAILIFTKTNSGG-TDKVWFYDMQADGYSLD 435

Query: 436 NEGKKRRIINDD------QRRQILDIYVS----------RENGKFSRMLDYRTFGYRRIK 479
           ++  K     ++          IL  Y S          R+  + S M+  +        
Sbjct: 436 DKRTKLFKDGEEPSHEQSNIADILARYASIEEEDSTEAHRKRTEQSFMVPLKDIEANDYD 495

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +        + ++      +  +   K      +  +  L+ ++
Sbjct: 496 LSLNRYKEVVYEEVEYDEPKVILQRIKDLQKKMADGVKELEGLL 539


>gi|227872199|ref|ZP_03990565.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268]
 gi|227841955|gb|EEJ52219.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268]
          Length = 500

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 175/466 (37%), Gaps = 60/466 (12%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFG-------GSNIDLESFVKVAGYSFYNTSE 85
            VI   T L  ++  L+ T +   ++    G         N+D+   V       ++T  
Sbjct: 26  DVIEQMTYLMFIKD-LDDTDNLRAKEAAMLGLPFQSIFAENVDIGGRVVDGSQLKWSTFH 84

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-E 144
              +    +  +  +  +I +   +  + +  +     I ++    +L KI      +  
Sbjct: 85  DFPANKMYSIVQEWVFPFIKNLHGDKNSAYSKY-MDDAIFKINTPLMLSKIVDAMDELYS 143

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +  +     +  ++YE+L+ +           F TPR ++ +   L+           P 
Sbjct: 144 MMEELHQTDIRGDVYEYLLSKIAQSGVN--GQFRTPRHIIRMMVELM----------DPN 191

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCV 256
              ++ DP CGT GFL  + +++ +      +            + HG +++     +  
Sbjct: 192 PKDSICDPACGTSGFLVASGDYLRERYKKEVLLDKQNRNHFMNDMFHGYDMDRTMLRIGA 251

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M+   +E       + +I+   +LS      + +   L+NPPF    + D  + + + 
Sbjct: 252 MNMMTHGVE-------NPSIEYRDSLSDQNPDKELYSLILANPPFKGNLDADTISTDLQK 304

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                      + K     +LF+      L++    GGR A ++    LF   + +    
Sbjct: 305 -----------MCKTKKTELLFIALFVRMLKI----GGRCACIVPDGVLF--GSSNAHKA 347

Query: 377 IRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +R+ ++EN  +EA++++P+ +F     ++T + I +        G    +   D+     
Sbjct: 348 LRKEIVENQRLEAVISMPSGVFKPYAGVSTGILIFTK----TNHGGTDNVWFYDMTADGF 403

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           +   KR  I D+    I+  + + E  K  +  D ++F   + ++ 
Sbjct: 404 SLDDKRSSIKDNDIPDIISRFKNLEQEKDRKRTD-KSFMVSKKEIE 448


>gi|295112012|emb|CBL28762.1| Type I restriction-modification system methyltransferase subunit
           [Synergistetes bacterium SGP1]
          Length = 500

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 69/432 (15%), Positives = 152/432 (35%), Gaps = 53/432 (12%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNI 158
           +  +I +   + ++ +  +     I ++    +L KI     GI E            ++
Sbjct: 100 VFPFIKNLHGDKESAYSKY-MGDAIFKVPTPLMLDKIVTAMDGIYEQMAQLNAADTRGDV 158

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+ +  +        F TPR ++ +   ++           P     + DP CGT G
Sbjct: 159 YEYLLSKIATAGVN--GQFRTPRHIIRMMVDMM----------EPKADEIVCDPACGTSG 206

Query: 219 FLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           FL    +++ +                   + HG +++     +    M+   ++     
Sbjct: 207 FLVAVSDYLKENRKQEVFFNSQNKDHYMNHMFHGYDMDRTMLRIGAMNMMAHGVD----- 261

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  I+   +LS      +++   L+NPPF    + D  + +              + K
Sbjct: 262 --NPFIEYRDSLSDQNPDREKYTLILANPPFKGSLDADIVSTDLLK-----------VCK 308

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L++    GGR A ++    LF   + +    +R+ L+E + +EA+
Sbjct: 309 TRKTELLFLALFLRMLKV----GGRCACIVPDGVLF--GSSTAHKAVRKELIEGNRLEAV 362

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I + R       KV   +      S+ ++  + +  +    
Sbjct: 363 ISMPSGVFRPYAGVSTAILIFT-RTGHGGTDKVWFYDMKADGYSLDDKRSETKENDVPDI 421

Query: 450 ---RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                 LD    R+  + S  +           +   L      +   +          K
Sbjct: 422 VARFHALDTEQDRKRTEQSFFVPKEEIVGNDYDLS--LNKYRQTEYKAVEYPPTSEIMAK 479

Query: 507 LSPLHQSFWLDI 518
           L  L +    D+
Sbjct: 480 LDELEREIGADM 491


>gi|86152925|ref|ZP_01071130.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|19881263|gb|AAM00869.1|AF486554_5 HsdM [Campylobacter jejuni]
 gi|85843810|gb|EAQ61020.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 494

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 91/539 (16%), Positives = 187/539 (34%), Gaps = 70/539 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKTMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EKDKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            ++  +    R   +    +   + ++  L   E  +   + +   Q  +L+ LK +++
Sbjct: 438 WLVSKKELEERNYDLS--AKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK 494


>gi|46143840|ref|ZP_00133970.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 252

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 30/253 (11%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKE 315
             M +  +  D       +I  G TL K  F   K F   +SNPP+  KW  D D     
Sbjct: 1   MNMFLHNINYDK-----FDITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPTLIN 55

Query: 316 HKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            +     RF P   L   S     F++H  + L       GRAAIV      + G A   
Sbjct: 56  DE-----RFAPAGVLAPKSKADFAFILHALSYLSAR----GRAAIVTFPGIFYRGGA--- 103

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IR++L++N+ +E +++L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++  
Sbjct: 104 EQKIRQYLVDNNFVETVISLAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKK 160

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK--VLRPLRMSFIL 490
             N      ++ D+   +IL ++  + +     +M+D +          V   +      
Sbjct: 161 ETN----NNVLTDEHIAEILKLFGDKADVDHLVKMVDNQAIADNDYNLAVSSYVEAKDER 216

Query: 491 DKTGLARLEADIT 503
           +   +  L A+I+
Sbjct: 217 EVINITELNAEIS 229


>gi|19881250|gb|AAM00858.1|AF486552_4 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 183/538 (34%), Gaps = 69/538 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKAMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  ++S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTLNK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 QSEKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++  +    R   +      +   +K      E   +  +   + Q +  ++   + 
Sbjct: 438 WLVSKKELEERNYDLSAK-NPNVKEEKILRTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|254467344|ref|ZP_05080755.1| subunit M of type I restriction-modification system
           [Rhodobacterales bacterium Y4I]
 gi|206688252|gb|EDZ48734.1| subunit M of type I restriction-modification system
           [Rhodobacterales bacterium Y4I]
          Length = 481

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 139/394 (35%), Gaps = 68/394 (17%)

Query: 38  FTLLRRLECALEPTRSAVRE------KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+ ++   E       +      ++L +     D E         F NT  + +L  
Sbjct: 33  MFFLKIIDDQDEELEFTRDDYTSPIPEHLQWRAWAADPEGITGDELQDFVNTQLFPTLKE 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L  T +R  +   +               F      ++   L+ ++    S ++ +    
Sbjct: 93  LPPTTSRARVVRSV---------------FEDAYNYMKSGQLMRQVINKISEVDFN-SLS 136

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             +   ++YE L+    +  +  A ++ TPR V       L           P     L 
Sbjct: 137 ERQHFGDVYEQLLNDLQNAGN--AGEYYTPRAVTAFMVQQL----------DPQPGEILM 184

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CGTGGFLT AM H+ D        +          E +P  H +C   ML+  +E  
Sbjct: 185 DPACGTGGFLTCAMRHMRDRYVKRPEDEAKMQASLRAVEKKPLPHMLCTTNMLLHNIE-- 242

Query: 268 PRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   ++  +TL++        +R    LSNPPFG K   ++D +E           
Sbjct: 243 ----EPSWVKHDNTLARPLISWTKDERVDIILSNPPFGGK---EEDGIENNFP------- 288

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K  + + LFL  +   L+      GRAA+VL    LF       ++ ++  LL  
Sbjct: 289 ---QFKTRETADLFLALIIRLLK----KNGRAAVVLPDGSLF---GEGIKTRLKEHLLTE 338

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSNRKTEE 417
             +  IV LP  +F    +I T L         +
Sbjct: 339 CNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTQ 372


>gi|305665032|ref|YP_003861319.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Maribacter sp. HTCC2170]
 gi|88709784|gb|EAR02016.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Maribacter sp. HTCC2170]
          Length = 707

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 93/507 (18%), Positives = 177/507 (34%), Gaps = 67/507 (13%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             LR L+   E  +    E  L        L+   +   ++     +  L    +     
Sbjct: 34  MFLRYLD---ELEQDKADEAELKGEEYKFILDEEYRWPIWAMPKDDDGKLDYHKAMTGPD 90

Query: 94  --TNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146
                   L  Y+A F   +DN K I       FS    +++    L +I +    +   
Sbjct: 91  LVQFVDRKLFPYLAEFKQKADNPKTIEYKIGEIFSELKNKIKSGYNLREILEYADELPFR 150

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             T     +S++YE  I+  G+        + TPR ++     ++           P + 
Sbjct: 151 AST-DKHELSHLYESKIKNMGN-AGRNGGQYYTPRPLIRAMINVI----------DPQIG 198

Query: 207 RTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
             +YD   G+ GFL +   ++         + K       +G+E +   + + V  M++ 
Sbjct: 199 EKIYDGAAGSCGFLCETYEYMYERMEKTTGNLKTLQEETLYGKEKKNLAYVIGVMNMILH 258

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E+      +   +      +D+    R+H  L+NPPFG K  K+              
Sbjct: 259 GIEAPNIIHTNTLGEN----VRDIQEKNRYHVILANPPFGGKERKEVQQNFD-------- 306

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  K  + + LFL H    L+     GGRAAIV+  S L N       S +R+ LL
Sbjct: 307 ------IKTGETASLFLQHFIKSLKT----GGRAAIVIKDSFLSNNTE-KAYSTLRKNLL 355

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            +  +  I+ LP   F+   + T +   +     ++      I    L    +    K +
Sbjct: 356 GSCELNCILDLPRGTFYGAGVKTVVLFFTKGAPTKK------IWYYKL--DPKRTLGKTK 407

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +ND+  +  L+   ++E GK S ++           +          ++  L ++ +  
Sbjct: 408 PLNDNDFKDFLEKIRNKEIGKNSWIIKAHEIDENTCNL-----TPINPNEEKLDKILSPN 462

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPY 529
           T       +   +   L+ +   I  Y
Sbjct: 463 TIISAVSKYSMDFNSELQKIKTNIDSY 489


>gi|301057181|ref|ZP_07198312.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300448739|gb|EFK12373.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 326

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 135/357 (37%), Gaps = 53/357 (14%)

Query: 58  KYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSD 109
           +Y    G+  +   S + +    FY         L                   I  +  
Sbjct: 3   QYAKLKGTRREKPVSEIAIEKCGFYLPDHARYDHLLKLPEEQDIAKAIKKAMEAIEEYKP 62

Query: 110 NAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
             K I  +D  F   + R +K+ +  ++ KNFS I   P+     +   IYE+ +  F  
Sbjct: 63  ELKGILPQDEYFR--LTRTDKS-IPMQLLKNFSDI---PEDAAGDMFGQIYEYFLGNFAM 116

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +G  +F TPR VV L   ++                T++DP CG+GG    +   + 
Sbjct: 117 AEGQGGGEFFTPRSVVRLMVEIIEPHRG-----------TVFDPACGSGGMFVQSAKFIR 165

Query: 229 DCGSH-HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                       L  +GQE   ET  +    + +  L  D         +Q +T  +D F
Sbjct: 166 RHRHEMANGNGDLFVYGQEKTLETVKLAKMNLAVNGLRGDI--------RQANTYYEDPF 217

Query: 288 TG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSML 337
               +F Y L+NPPF    +     VE + +    G         +   G   + + + L
Sbjct: 218 ESFGQFDYVLTNPPFNVD-DVSLKRVETDKRFNTYGIPRKKTKAKKKDQGNETVPNANYL 276

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           ++   A  L+      GRAA+V+++S      A   E+EIR+ L+ N+LI   + LP
Sbjct: 277 WINLFATSLKPE----GRAALVMANSA---SDARHSEAEIRKTLIRNNLIYGTLTLP 326


>gi|148925705|ref|ZP_01809393.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845715|gb|EDK22806.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 494

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 182/538 (33%), Gaps = 69/538 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYEINLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKAMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EQEKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++  +    R   +      +   +K      E   +  +   + Q +  ++   + 
Sbjct: 438 WLVSKKELEERNYDLSAK-NPNVKEEKILKTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|253563526|ref|ZP_04840983.1| type I restriction-modification system methyltransferase subunit
           [Bacteroides sp. 3_2_5]
 gi|251947302|gb|EES87584.1| type I restriction-modification system methyltransferase subunit
           [Bacteroides sp. 3_2_5]
 gi|301162172|emb|CBW21717.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis 638R]
          Length = 553

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/542 (14%), Positives = 174/542 (32%), Gaps = 54/542 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-- 80
              ++  +I    L + L        +  +S + +K           E+           
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85

Query: 81  -----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                      Y+      +  G  +     +S +   ++    IF     ++T   L  
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNVDLHSME------CYDPSAGTGTLLMALSHQIGEERCTIFS 259

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I     + L+       +   L   ++ D               S D    ++F + +
Sbjct: 260 QDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVS-------PYHKSDDGQQLRQFDFVV 312

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ +             P +P     SM         +       G+ 
Sbjct: 313 SNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKTGKG 370

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +       T 
Sbjct: 371 AIVIPTGFITAKS--GIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDRSATA 428

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
           +   KV LI+A+ L    ++    +++ +ND++  +I+  +  +E    FS  + Y    
Sbjct: 429 D---KVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAVEDFSVAVSYDEIK 485

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         +D   +   E +        +    + +    + ++I     A  
Sbjct: 486 EKGYSLSAGQYFDIKIDYVDITEEEFNFRMADYKQILSEQFAES-HRLEEEIMKQLDALQ 544

Query: 535 FV 536
           F 
Sbjct: 545 FN 546


>gi|57238568|ref|YP_179699.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni RM1221]
 gi|19881230|gb|AAM00841.1|AF486549_3 HsdM [Campylobacter jejuni]
 gi|57167372|gb|AAW36151.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni RM1221]
 gi|315059002|gb|ADT73331.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Campylobacter jejuni subsp. jejuni S3]
          Length = 494

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/507 (16%), Positives = 174/507 (34%), Gaps = 66/507 (13%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L+      +       + Y +          +         +       +     
Sbjct: 32  LFLKFLDDYETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEF 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               L  Y+ +F +N    F+  +      F     R+     L ++      I  + + 
Sbjct: 92  VNKELFPYLKNFKNN--DDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKED 149

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+      +F TPR ++     ++           P     +
Sbjct: 150 -EVFALGEVYEKLLKDMGSDGGNS-GEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+            L              G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++  ++S      +   +       D+   +++   L+NPPFG K        EKE   
Sbjct: 258 MILHEVKSPNIIKTNTLNK----KITDITQSEKYEVILANPPFGGK--------EKEQIQ 305

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K +   +LFL H+   L+      GR AI++    LF  +  +    ++
Sbjct: 306 ENFP------IKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLF--QNSNAFVSVK 353

Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN- 436
           + LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  I   
Sbjct: 354 KDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYELIPPY 408

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           +  K + +     ++ L  Y  R+    S ++  +    R   +      +   +K    
Sbjct: 409 KLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNYDLSAK-NPNVKEEKILKT 467

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMM 523
             E   +  +   + Q +  ++   + 
Sbjct: 468 SEEILNSLEENLKIQQEYLNELKSILK 494


>gi|94265771|ref|ZP_01289506.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93453706|gb|EAT04087.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 153/461 (33%), Gaps = 68/461 (14%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASF---SD 109
           F    ++ E F             +                    N L   + +     D
Sbjct: 39  FDDREVEWEMFDDAYRSPIPEPLRWRNWAADPEGMTGEKLKDFIDNTLFPGLQNLQPQGD 98

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           + + +     F      ++   LL ++      GI  +        +  +YE +++   S
Sbjct: 99  DYRGVMIRSLFEDAYNYMKSGQLLRQVINKLQGGINFN-KAGERHELGGVYEQILKDLQS 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +  A +F TPR V       +           P +   + DP CGTGGFLT A+ H  
Sbjct: 158 AGN--AGEFYTPRAVTRFMVNRV----------DPKLREMVMDPACGTGGFLTCAIEHKR 205

Query: 229 DCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +        G E +   H + V  +++  +E+         I+  + L++ 
Sbjct: 206 KHYVKTPQDEATLQRSILGVEKKSLPHLLAVTNLILHGIEN------PDQIKHDNALARP 259

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  +R    ++NPPFG     ++D +E            P   +  + + LFL   
Sbjct: 260 LISWSPKERVEVIVANPPFGG---MEEDGIETNF---------PQALRTRETADLFLTLF 307

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
            + L+      GRAA+VL    LF       ++ ++  LL    +  IV LP  +F   T
Sbjct: 308 IHLLKPR----GRAAVVLPDGFLF---GEGMKTRLKEKLLAECNLHTIVRLPNGVFNPYT 360

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            I T L   S     E       I   +  +        K + +   + +  +D +    
Sbjct: 361 GIKTNLLFFSKGAPTEA------IWYYEHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEA 414

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +G  +R     T    ++ V +    ++ LD       E  
Sbjct: 415 DGFTARR---ETERAWKVPVEQIKARNYNLDIKNPYAAEQQ 452


>gi|294809017|ref|ZP_06767739.1| putative type I restriction-modification system, M subunit
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294443742|gb|EFG12487.1| putative type I restriction-modification system, M subunit
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 553

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/542 (14%), Positives = 171/542 (31%), Gaps = 54/542 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-- 80
              ++  +I    L + L        +  +S + +K           E+           
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85

Query: 81  -----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                      Y+      +  G  +     +S +   ++    IF      +T   L  
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTVNTKIPLFE 145

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHSME------CYDPSAGTGTLLMALSHQIGEERCTIFS 259

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I     + L+       +   L   ++ D               S D    ++F + +
Sbjct: 260 QDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVS-------PYHKSDDGQQLRQFDFVV 312

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ +             P +P     SM         +       G+ 
Sbjct: 313 SNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKTGKG 370

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +       T 
Sbjct: 371 AIVIPTGFITAKS--GIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSAT- 427

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
               KV LI+A+ L    ++    +++ +NDD+  +I+  +  +E    FS  + Y    
Sbjct: 428 --TDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAVEDFSVAVSYDEIK 485

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         +D   +   E +             + +    + ++I     A  
Sbjct: 486 EKGYSLSAGQYFDIKIDYVDITEEEFNARMANYKQTLTEQFKES-HRLEEEIMKQLDALR 544

Query: 535 FV 536
           F 
Sbjct: 545 FN 546


>gi|229490946|ref|ZP_04384780.1| N-6 DNA methylase [Rhodococcus erythropolis SK121]
 gi|229322153|gb|EEN87940.1| N-6 DNA methylase [Rhodococcus erythropolis SK121]
          Length = 515

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 154/464 (33%), Gaps = 70/464 (15%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVR 56
           TGS     + IW        A  L    +   +         ++RL+    L   ++   
Sbjct: 3   TGSVKGQIDTIWNAFWSGGVANPLE-VMEQLTY------LLFIKRLDDQQTLALNKANRL 55

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
            + +      +  +   +      ++T +              +  +I +   +      
Sbjct: 56  GRPIEGNPFPVGTDDDGRDYADLRWSTIKNMHPDEAFDVVGQRVFPFIRAMRSDDSTYAH 115

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                     +   GLL K+     G+ +           ++YE+++ +  S        
Sbjct: 116 H--MKDARLSIPSPGLLMKVIDLLDGVPMEN----LDTKGDVYEYMLSKIASAG--QNGQ 167

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           F TPR ++ +   ++          +P     + DP  GT GFL  A  H+    S    
Sbjct: 168 FRTPRHIIQMMVEMM----------APQPGDRIVDPASGTCGFLVAASEHMRAHHSEEIS 217

Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                +     + HG + +     +    M++  +E+           + S    +    
Sbjct: 218 SGATREQYHHDMFHGFDFDNTMLRIGSMNMMLHGIEN------PDVRYRDSLAEANTADA 271

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   L+NPPF    + +  A + +            + K     +LF+      L+  
Sbjct: 272 GAYSMILANPPFAGSLDYENTAKDLQQ-----------IVKTKKTELLFMALFLRLLKP- 319

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GGRAA+++    LF   + +    +R+ L+E+  ++A+V LP+  F     ++T + 
Sbjct: 320 ---GGRAAVIVPDGVLF--GSSTAHKTLRKMLVEDHKLDAVVKLPSGAFKPYAGVSTAIL 374

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                 T    G    +   ++     +   KR  + DD   +I
Sbjct: 375 FF----TRTDSGGTDNVWFYEVTADGYSLDDKRTPLLDD--EKI 412


>gi|19881281|gb|AAM00884.1|AF486557_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/538 (16%), Positives = 179/538 (33%), Gaps = 69/538 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILE 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKTMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPFG          EKE              K +   +LFL H+   L+
Sbjct: 283 EKDKYEVILANPPFG--------GXEKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++  +    R   +      +   +K      E   +  +     Q +  ++   + 
Sbjct: 438 WLVSKKELEERNYDLSAK-NPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK 494


>gi|261416114|ref|YP_003249797.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372570|gb|ACX75315.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327814|gb|ADL27015.1| putative type I restriction-modification system, M subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 481

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 177/495 (35%), Gaps = 74/495 (14%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
             +E T   +  KYL    +  + E+ +K   Y      ++  +T  +  T+N    +  
Sbjct: 24  DYVEQTSWVLFLKYLDNLEAEREEEAELKGETYERIIDKKFRWNTWAAPKTKNGEPDHAK 83

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK------------------NFSGIELHP 147
           + + +    F +      + + ++     +  +                  N   I  + 
Sbjct: 84  ALTGDDLTDFVNNKLFPYLKKFKETATTPQSLEYKIGEIFGELRNKITSGYNLREILWYA 143

Query: 148 D------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           D      +     MS++YE  IRR G+       ++ TPR ++     ++          
Sbjct: 144 DALSFQSSEDKHEMSHLYEDKIRRMGN-AGRNGGEYYTPRPLIRTIVRII---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAG 258
            P +  T+ DP CG+ GFL +A  ++          +       +GQE +   + + +  
Sbjct: 193 DPKIGETVLDPACGSAGFLCEAYAYMKQKVKSVADRETLQKKTFYGQEKKGLAYIIGIMN 252

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++  + +      +   +       ++    R    ++NPPFG K            + 
Sbjct: 253 MILHGVNAPNILHTNTLSEN----MANVEQKMRKDVIIANPPFGGK------------ER 296

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E+ +  P   K S+ + LF+ +    L+     GGRA IV+ ++ L N    S    +R
Sbjct: 297 AEVQQNFP--IKTSETAYLFMQYFVKLLKA----GGRAGIVIKNTFLSNTDNAS--VMLR 348

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + LLEN  +  I+ LP+ +F    + T +      +  E+      I             
Sbjct: 349 KELLENCDLHTILDLPSGVFTGAGVKTVVLFFEKGRPTEK------IWYYQ--PDFGRNL 400

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            K   + +D   + + +   + + + S  ++ +            L +     KT +   
Sbjct: 401 GKTNPLTEDDLAEFVKLQKKKTDSEKSWTINVKDLNPETYD----LSVKNPNKKTEVELR 456

Query: 499 EADITWRKLSPLHQS 513
           +A    +++  L + 
Sbjct: 457 DAKTIIKEMQSLDEE 471


>gi|332662758|ref|YP_004445546.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331572|gb|AEE48673.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 511

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 153/448 (34%), Gaps = 79/448 (17%)

Query: 39  TLLRRLECALEPTRSAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLST---- 90
             L+ L+  LE  ++   E     Y           ++         + SE   S     
Sbjct: 33  LFLKYLDD-LEQDKATAAELTGKPYKNIISPEFQWATWAAPKKAKAGSASEVGRSVSEVE 91

Query: 91  ----------LGSTNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLY 134
                       +      L  Y+  F       D  +    +  FS    R++    L 
Sbjct: 92  LDHQRALTGDDLADFVNIQLFPYLKKFKTEAESPDTIEYKIGEI-FSELKNRIQSGYNLR 150

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++      +           MS++YE  I+  G+       ++ TPR ++     ++   
Sbjct: 151 EVINRIDELRFR-THAEKHEMSHLYEDKIKNMGN-AGRNGGEYYTPRPLIKTIVKVV--- 205

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------PILVPHGQ 245
                  +P + +T+YD   G+ GFL +A  ++ + G+  +                +G+
Sbjct: 206 -------APKIGQTIYDGAVGSAGFLVEAFEYLKNGGADGRPNLSTKDVETLQKRTFYGK 258

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E +   + + +  M++  +E+      +   +       D+    R+   L+NPPFG K 
Sbjct: 259 EKKSLAYIIGIMNMILHGVEAPNIVHTNTLAEN----LSDIQEKDRYDIILANPPFGGK- 313

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      +  E+ +  P   K  + + LFL H    L+     GG+A +V+ ++ L
Sbjct: 314 -----------ERAEVQQNFP--IKTGETASLFLQHFIKILKA----GGKAGVVIKNTFL 356

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
            N    S    +R+ LLE   +  ++ LP   F    + T +               Q +
Sbjct: 357 SNTDNASI--SLRKLLLETCNLHTVLDLPGGTFTGAGVKTVVLFFEKGAP------TQKV 408

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQIL 453
               L  ++     K   +N+    + +
Sbjct: 409 WFYQL--NLERNLGKTNALNEKDLAEFV 434


>gi|19881275|gb|AAM00879.1|AF486556_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/538 (16%), Positives = 181/538 (33%), Gaps = 69/538 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F ++    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKND--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKTMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EKDKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILKSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFMSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFS 465
           +   S  K     G     +    +  I   +  K + +     ++ L  Y  R+    S
Sbjct: 383 VLFFSKGKKCICEG-----DGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANS 437

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++  +    R   +      +   +K      E   +  +   + Q +  ++   + 
Sbjct: 438 WLVSKKELEERNYDLSAK-NPNVKEEKILRTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|86141513|ref|ZP_01060059.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Leeuwenhoekiella
           blandensis MED217]
 gi|85832072|gb|EAQ50527.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Leeuwenhoekiella
           blandensis MED217]
          Length = 516

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 165/421 (39%), Gaps = 62/421 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGS---NIDLESFVKVAGYSFYNTSEYSLSTLGST 94
              ++ L+     TR+    K L    +     D + F           + +S+     T
Sbjct: 35  LIFIKDLDET--ETRNERMAKRLDKEFTPIFGPDQQDFRWKNLKEIDVQARHSIF----T 88

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N+ + +  +I S     K++F  +        + KA  L ++ +    +++    +    
Sbjct: 89  NSVDGIFPFIRSLGSE-KSLFSTY-MKDASFGINKAATLDQVMEKLERLDMSNQDIK--- 143

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE+L+ +   E    A  F TPR ++ L   ++           P +  T+ DP+ 
Sbjct: 144 -GDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVEMM----------QPKLEDTICDPSA 190

Query: 215 GTGGFLTDAMNHV------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           GT GFL  A  ++       +   + +     + +G E +     +    + +  +E   
Sbjct: 191 GTAGFLVAAKEYIDKHYDITELDRNKEHINKHMFNGTEFDATMLRIASMNLFLHGVEEPN 250

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             D+         +SKD      +   L+NPPF       K  ++KE     L      +
Sbjct: 251 IVDV-------DAVSKDNEVSDAYTLVLANPPF-------KGTIDKESIAPGLS----NV 292

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K +   +LFL  +  +L+     GGRAA ++    LF   +G     IR  ++ N  +E
Sbjct: 293 TKTTKTELLFLALMLRQLK----KGGRAAAIVPDGVLF--GSGKAFKSIRSEIVNNHKLE 346

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A+++LP+ +F   + ++T + I +        G    +   D+    ++   KR ++ D+
Sbjct: 347 AVISLPSGVFKPYSGVSTAILIFTK----TDNGGTDHVWFYDMKADGKSLDDKRNLLVDE 402

Query: 448 Q 448
           +
Sbjct: 403 E 403


>gi|146319439|ref|YP_001199151.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
 gi|145690245|gb|ABP90751.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
          Length = 300

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 108/311 (34%), Gaps = 43/311 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------PTRS 53
            + +  ++ N IW  A +L G+   +++   IL F   R L    E          P   
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 54  AVREKYLAFGGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
              +   A      DL   ++      GY+      ++       N+      Y   F  
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 109 ------------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                       ++ + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVVRAKSLNSIVKLIDSIEYKNDEGKD- 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  IYE+LI +F +   +   +F TP  V  +   ++      L  E      ++YDPT
Sbjct: 180 ILGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILDKIVT-----LGLEKSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287

Query: 274 KNIQQGSTLSK 284
            +  +     +
Sbjct: 288 ADTLESDWPER 298


>gi|294647362|ref|ZP_06724955.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CC 2a]
 gi|292637321|gb|EFF55746.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CC 2a]
          Length = 530

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/542 (14%), Positives = 171/542 (31%), Gaps = 54/542 (9%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-- 80
              ++  +I    L + L        +  +S + +K           E+           
Sbjct: 4   DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 62

Query: 81  -----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                      Y+      +  G  +     +S +   ++    IF      +T   L  
Sbjct: 63  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTVNTKIPLFE 122

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 123 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 182

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 183 YYTPHAIATIMARLLVGDNADLHSME------CYDPSAGTGTLLMALSHQIGEERCTIFS 236

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             I     + L+       +   L   ++ D               S D    ++F + +
Sbjct: 237 QDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTLVS-------PYHKSDDGQQLRQFDFVV 289

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF   +   ++ +             P +P     SM         +       G+ 
Sbjct: 290 SNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKTGKG 347

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +       T 
Sbjct: 348 AIVIPTGFITAKS--GIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDKSAT- 404

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
               KV LI+A+ L    ++    +++ +NDD+  +I+  +  +E    FS  + Y    
Sbjct: 405 --TDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAVEDFSVAVSYDEIK 462

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         +D   +   E +             + +    + ++I     A  
Sbjct: 463 EKGYSLSAGQYFDIKIDYVDITEEEFNARMANYKQTLTEQFKES-HRLEEEIMKQLDALR 521

Query: 535 FV 536
           F 
Sbjct: 522 FN 523


>gi|261417778|ref|YP_003251460.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|319767409|ref|YP_004132910.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
 gi|261374235|gb|ACX76978.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|317112275|gb|ADU94767.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
          Length = 634

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 159/439 (36%), Gaps = 53/439 (12%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            F+++    +    E SL  +          +++ +     +   +   ++FS    RL 
Sbjct: 36  KFLELDKERYSLPDELSLGVILKEGAFLAEKVKAVLNEIEAHVPFLKGVYEFSDLFGRLS 95

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              L Y +           +     +     E L    G+       + +TP  V  L  
Sbjct: 96  NNTL-YHLLSRIHSFAFTKEQWKQWI-----ESLFVYAGNMAGVEGVELITPAGVNELGI 149

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            LL                  YD   G  G L  A  +             +  +GQE+ 
Sbjct: 150 RLLNME-----------GGEFYDGASGLSGTLCAASEYARRHHCE------VALYGQEIN 192

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKK 304
               A+    +L               + +G TL++  F      K+F Y + N PFG +
Sbjct: 193 QRAWALGKLRLLFHD-------RTDARLAKGDTLTEPAFVEGNKLKKFDYIMMNFPFGMR 245

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +  +     N    RF  G    +   M F++H  + L+      G+A +V+++  
Sbjct: 246 INSYEQLM-----NDRYDRFVYGRLPRTSADMAFILHALSSLK----ENGKAVLVVTNGT 296

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G     E+ IR  LL  DLIE+++ALP+ L     I   L +L+  K+ ER G +  
Sbjct: 297 LFRGGP---EAVIREHLLAADLIESVIALPSSLLDGAAIQINLLVLNKNKSAEREGNILF 353

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRP 483
           INA +         + RR +  +   +I+ IY    E  + S+ +  R      +   R 
Sbjct: 354 INAENY---YGERRRGRRYLRQEDIERIVAIYHEGLEIDEVSKFVSVREIEEANLLSNRY 410

Query: 484 LRMS-FILDKTGLARLEAD 501
           L+ S + ++  G  +   D
Sbjct: 411 LQSSEWTIEPYGKVKFYHD 429


>gi|292656397|ref|YP_003536294.1| type I restriction-modification system methylation subunit
           [Haloferax volcanii DS2]
 gi|291370225|gb|ADE02452.1| type I restriction-modification system methylation subunit
           [Haloferax volcanii DS2]
          Length = 464

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/538 (17%), Positives = 170/538 (31%), Gaps = 87/538 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKH-TDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+   G    +   IW     L  D  H   + + +     L+ ++              
Sbjct: 1   MSRNNGKL-DVEQKIWDICGILREDGMHIGTYVEQVTVLLFLKMMDER------------ 47

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFE 116
             FG  +I++    +              S L   +    LE Y         +   I  
Sbjct: 48  EQFGSESIEIPEDCQ-------------WSVLKEKDGEELLEHYNRVVLPTLGDQDGIVG 94

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  F+   ++      L +  +    +E     +   V    YE L++R+  E  +GA  
Sbjct: 95  DI-FARVNSQFRTPVNLREAIREIDEVEWS--AIEVDVKGTAYEALLQRYAEEA-KGAGQ 150

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----- 231
           + TPR  +      +    D    +             GTGGFL  A  H+ +       
Sbjct: 151 YFTPRPAIKAIVKAVDPDHDDDIHDP----------AAGTGGFLIHAFEHILEKTNEGLD 200

Query: 232 ---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +        G EL PET  + +  + +  L+        +N + G +LS    T
Sbjct: 201 LSRDERRELMTENLSGMELVPETRRLGLMNLALHDLQ-------PQNFEVGDSLSLGPHT 253

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            + +   L+NPP+G   +K +                  +       + F+ H  + L+ 
Sbjct: 254 DESYDVILTNPPYGGNQKKKRA-------------RDDFMVDTRSPELNFVQHNMSLLKQ 300

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
               GG   +V+    LF   A      IR  L E+  +  ++ LP   F   TN+AT +
Sbjct: 301 ----GGECGMVVPDGTLFQSGAA---QRIRENLFEDFNVHTVLVLPIGAFQPYTNVATNV 353

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                  + E+      +   DL T +  + KK   + ++     L+ + SRE  +    
Sbjct: 354 IFFEKGDSTEK------VWFYDLRTEM-EKIKKSNPLTEEHFEDFLENFDSREESEHYFS 406

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +           +       F          E     + L    +     I+  +  +
Sbjct: 407 VSIEEIEENEHTLSYKQYKEFDDGDEVAPPEELLTELQSLQDTVRENTEAIMDELEDE 464


>gi|47779389|gb|AAT38618.1| predicted HsdM [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 475

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/506 (18%), Positives = 176/506 (34%), Gaps = 86/506 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ LE   E  ++                 + +    ++      Y  S+ G    +N
Sbjct: 34  LFLKYLEDFEEDLKNR----------------AILDGKQHTPIMDERYMWSSWGRNEGKN 77

Query: 99  NL--ESYIASFSDNAKAIFEDFDFSSTIAR----------------LEKAGLLYKICKNF 140
           +L  +  I+  S++      +F   S   +                +E   +L  +    
Sbjct: 78  SLIDDDLISFVSEDLFPYLRNFKTISKDTKSIQYKVGQIFDQIKFLVESGNILRDVLDEI 137

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            GIE    +  D  +S++YE  I++ G+     A  + TPR +++     +         
Sbjct: 138 DGIEFFKSSESD-ELSDLYEESIKQMGN-SGTSAGQYYTPRPLINSIVKAV--------- 186

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCV 256
            +P +  T+ DP CG+GGFL     H+ +          I       GQE      A+ +
Sbjct: 187 -NPTLGETVLDPACGSGGFLISTFEHILNKKELTAKEFNILQKDTVLGQEKIGIPFAIGI 245

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++  +E+      +      ST + DL    R    ++NPPFG          E+E 
Sbjct: 246 MNMIMHGIETPNIIRDNTL----STNTLDLQDKDRVDVIVANPPFGGS--------EREE 293

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                        + S+ + LF+ +   KL++    GGRA +++ ++ L N  A S    
Sbjct: 294 IKSNFA------IQSSETAYLFMQYFLKKLKI----GGRAGLIIKNTFLSNPDAAS---- 339

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +R+ LL+   +  IV LP  +F  T + T        K      K + I    L  ++  
Sbjct: 340 LRQLLLKECNLHTIVDLP-KVFGTTGVQTVALFFEKGK------KTKDIFYYQL--NLDR 390

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
              K   +N     +  D++ SR++ K S  +           +  P   +         
Sbjct: 391 NIGKTNPLNKKDLEEFDDLFQSRKDSKNSWKISINDIDKETWDLS-PTNPNVEDTSEKRT 449

Query: 497 RLEADITWRKLSPLHQSFWLDILKPM 522
             E       L          I + +
Sbjct: 450 PSEIIAEIEALDSEAAKAMAAIKELL 475


>gi|293372411|ref|ZP_06618795.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CMC 3f]
 gi|292632594|gb|EFF51188.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CMC 3f]
          Length = 553

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/550 (14%), Positives = 175/550 (31%), Gaps = 66/550 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-- 80
              ++  +I    L + L        + T+S + +K +         E+           
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNTKSDIAKKLIGDVKWETAYENLSDDERMLIQS 85

Query: 81  -----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-- 127
                      Y+      +     +     +S +   ++    IF     ++T   L  
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQSKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145

Query: 128 ----------EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAED 176
                     ++A     +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDTAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHSME------CYDPSAGTGTLLMALSHQIGE------- 252

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------K 290
                   Q++   ++ +         L  +       N  QG TL             +
Sbjct: 253 -DRCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVNPYHKSDGGQQLR 306

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F + +SNPPF   +   ++ +             P +P     SM         +    
Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAAMP--ARFWAGVPNVPAKKKESMAIYTCFIQHVINSL 364

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ AIV+ +  +        E++I   ++++ ++   V++P+++F  T     +   
Sbjct: 365 KKTGKGAIVIPTGFITAKS--GIENKILHKIVDDKIVYGCVSMPSNVFANTGTNVSVLFF 422

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSREN-GKFSRML 468
               T     KV LI+A+ L    ++    +++ +ND++  +I+  +  +E    FS  +
Sbjct: 423 DKSAT---TDKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAVDDFSVAV 479

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            Y     +   +         +D   +   E +             + +    + ++I  
Sbjct: 480 TYDEIKEKGYSLSAGQYFDIKIDYVDITEEEFNQRMANYKQTLSEQFAES-HRLEEEIMK 538

Query: 529 YGWAESFVKE 538
              A  F   
Sbjct: 539 QLNALQFNVN 548


>gi|322379268|ref|ZP_08053654.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
 gi|321148305|gb|EFX42819.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
          Length = 301

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/294 (20%), Positives = 105/294 (35%), Gaps = 41/294 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YLAFGG 64
           L   IW  A+ L G     DF + +L   L R L   L    +   +K      Y     
Sbjct: 17  LFKAIWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDASFNYAKLKD 76

Query: 65  SNIDL--ESFVKVAGYSFYNTSEYS---------LSTLGSTNTRNNLESYIASFS----- 108
              +L  E  ++  G+    +  +          L       T N++   I + S     
Sbjct: 77  EKANLAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNIEASSLQSEA 136

Query: 109 -DNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLI 163
            +N K +F D D +S         K   + ++ +  + +++ H       V  + YE L+
Sbjct: 137 QENFKGLFADLDMNSDKLGNGVKSKNENIARLLEGVASMQISHYQKNGIDVFGDAYEFLM 196

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP +V  L T L++    ++ K        +YDP CG+G  L   
Sbjct: 197 GMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKSINK--------VYDPCCGSGSLLLQF 248

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
              +                GQE+   T+ +C A ML+  ++ D      K   
Sbjct: 249 AKILGVENIKQG------FFGQEINQTTYNLCRANMLLHNVDYDKFHINYKMQN 296


>gi|262371154|ref|ZP_06064475.1| type I restriction enzyme, M protein [Acinetobacter johnsonii
           SH046]
 gi|262313884|gb|EEY94930.1| type I restriction enzyme, M protein [Acinetobacter johnsonii
           SH046]
          Length = 504

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/543 (15%), Positives = 182/543 (33%), Gaps = 69/543 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           TG   S  + IW       G     +  + +     +RRL+  ++ T+     K      
Sbjct: 8   TGEIKSKIDQIWNAFWS-GGISNPLEVMEQMTYLLFIRRLDE-IQITKEKKANKLSQIKK 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDNAKAIFEDFDFS 121
             I +E  +          S++      +T      N +  +I +     +  +      
Sbjct: 66  QTIAVEHPIFTPEQDHLRWSKFITLGDAATLYNTVANEVFPFIKNLGAEDETTYSH-HMK 124

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                +    LL K+    + + +           +IYE+++ +  S        F TPR
Sbjct: 125 DARFTIPTPALLTKVVDLVADVPMD----DKDTKGDIYEYMLGKIASAG--QNGQFRTPR 178

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------- 234
            ++ +   L+           P    T+ DP CGT GFL  A  ++ D  S         
Sbjct: 179 HIIKMIVELM----------QPKPTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPEA 228

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K        G + +     +    M++  +E+    +     +  S          ++ 
Sbjct: 229 AKRFSEETFFGYDFDSTMLRIGSMNMMLHGVENPRIENRDSLSETHS------HIESKYS 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPF    + +  A           +    + K     +LFL      L+     G
Sbjct: 283 LILANPPFAGSLDNESCA-----------KNIQAVVKTKKTELLFLALFLRLLKT----G 327

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           GRAA+++    LF   +     ++R+ ++E   +EAI+++P+ +F     ++T + I + 
Sbjct: 328 GRAAVIVPDGVLF--GSSKAHKDLRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTK 385

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIN-----DDQRRQILDIYVS------REN 461
                  G    +   D+     +   KR  ++     ++    I+  + +      R+ 
Sbjct: 386 ----TMSGGTDKVWFYDMQADGYSLDDKRNELDASKHENNNIPDIIARFKNLEAESTRKA 441

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            + S M+D          +        + ++         +   ++        +  LK 
Sbjct: 442 TEQSFMVDKADIAANGYDLSINRYKEVVYEQVEYEAPSKILADLEVLEQDILKGMTTLKE 501

Query: 522 MMQ 524
           M++
Sbjct: 502 MLK 504


>gi|148544649|ref|YP_001272019.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|184154002|ref|YP_001842343.1| type I restriction-modification system M subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227363771|ref|ZP_03847878.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|325682982|ref|ZP_08162498.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
 gi|148531683|gb|ABQ83682.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|183225346|dbj|BAG25863.1| type I restriction-modification system M subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071128|gb|EEI09444.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|324977332|gb|EGC14283.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
          Length = 517

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 85/524 (16%), Positives = 180/524 (34%), Gaps = 71/524 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLS 89
           I     ++ L+ +    +          Y +     + ++  + V G    ++T +    
Sbjct: 32  ITYLMFIKDLDDSDNRRKKDNILLGLNDYQSIFDGEVKIDDDLTVNGDELRWSTFKDFAP 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI------ 143
               T  +  +  +I +  +N +  +  +        +   GLL K+      I      
Sbjct: 92  EKMFTIVQTEVFPFIKNLKNNEEGSYARY-MKDATFLIPTPGLLSKVIGELDDIYRLMDE 150

Query: 144 ELHPDTVPD----------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           E+  D   +           V  ++YE+L+ +  +        F TPR ++ +   L+  
Sbjct: 151 EVQKDNSKNKEKALIINRGDVRGDVYEYLLGKLSTAGRN--GQFRTPRHIIKMIVELM-- 206

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQ 245
                   +P +   + DP  GT GFL ++   + D                   +  G 
Sbjct: 207 --------NPQVTDKICDPAAGTAGFLVESAEFLQDKKKEEIFYNKENRHYFHNEMFTGY 258

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +     +    ML   ++       + N++   +LS+       +   ++NPPF  K 
Sbjct: 259 DTDQTMLRIGAMNMLSHGVD-------NPNVEYQDSLSEQNTDRDEYSLIMANPPF--KG 309

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             D ++V K+            + K     +LF+      L++    GGR A ++    L
Sbjct: 310 SLDYNSVSKDLLK---------ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVL 356

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQL 424
           F   +      IR+ ++EN+ +EA++++P+ +F     ++T + I +         KV  
Sbjct: 357 F--GSSKAHKSIRKEIIENNNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWF 413

Query: 425 INAT-DLWTSIRNEGKKRRIINDDQRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            + T D ++        +     D   +   LD  V R+    S M+D +        + 
Sbjct: 414 YDMTADGFSLDDKRTPVKENDIPDIIERFNHLDKEVDRKKTNKSFMVDKKDIVDNDYDLS 473

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                            E  I   +      +  L  LK +++ 
Sbjct: 474 INRYKEIEYKPVKYPPTEEIIAEIEKLDKEANDALQELKALLKD 517


>gi|261492692|ref|ZP_05989241.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495869|ref|ZP_05992299.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308461|gb|EEY09734.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311658|gb|EEY12812.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 489

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/454 (16%), Positives = 166/454 (36%), Gaps = 58/454 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGST 94
             L+ +  A E       ++Y +   + +  +++ +        T +    +  + L  T
Sbjct: 34  LFLK-IYDAKEQEWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPT 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I+          
Sbjct: 93  LKNLPISADTPMNQRIIRAAFEDNN-----NYMKNGVLLRQVINIIDEIDF-AHYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V       +           P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMVQAI----------KPKLGERIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +           +     +G E +   H +C+  +L+  +++      
Sbjct: 195 GTGGFLTSALKVLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHD 254

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      KD     +F   L NPP+G              +  ++ +  P   + S
Sbjct: 255 NALEK----SVKDYTENDKFDVILMNPPYGGS------------EIEQIKKNFPTALQSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GRAA+VL    LF     + +  I++ LLE   +  I+ 
Sbjct: 299 ETADLFMSVIMYRLKQ----NGRAAVVLPDGFLFGTD--NAKVAIKKKLLEEFNLHTIIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +      +   R   V  ++    + +       +     +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDKTEPT-RETWVYRLDMPQGYKNFSKTKPMKL----EHFNE 407

Query: 452 ILDIYVSRENGKF-----SRMLDYRTFGYRRIKV 480
           +++ + +R+  +      ++    +    R+  +
Sbjct: 408 VVEWWGNRQVIEVEGFDKAKSFTLKEISDRQYNL 441


>gi|254362757|ref|ZP_04978840.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153094385|gb|EDN75236.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 489

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 172/472 (36%), Gaps = 60/472 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGST 94
             L+ +  A E       ++Y +   + +  +++ +        T +    +  + L  T
Sbjct: 34  LFLK-IYDAKEQEWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPT 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I+          
Sbjct: 93  LKNLPISADTPMNQRIIRAAFEDNN-----NYMKNGVLLRQVINIIDEIDF-AHYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V       +           P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMVQAI----------KPKLGERIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +           +     +G E +   H +C+  +L+  +++      
Sbjct: 195 GTGGFLTSALKVLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHD 254

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      KD     +F   L NPP+G              +  ++ +  P   + S
Sbjct: 255 NALEK----SVKDYTENDKFDVILMNPPYGGS------------EIEQIKKNFPTALQSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GRAA+VL    LF     + +  I++ LLE   +  I+ 
Sbjct: 299 ETADLFMSVIMYRLKQ----NGRAAVVLPDGFLFGTD--NAKVAIKKKLLEEFNLHTIIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +      +   R   V  ++    + +       +     +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDKTEPT-RETWVYRLDMPQGYKNFSKTKPMKL----EHFNE 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADI 502
           +++ + +R+      +++   F   +   +       + LD  G    E +I
Sbjct: 408 VVEWWGNRQ------VIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEEEEI 453


>gi|329115887|ref|ZP_08244604.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020]
 gi|326906292|gb|EGE53206.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020]
          Length = 202

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 29/229 (12%)

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +    H        HGQ+L   T  +    +++  ++ +      
Sbjct: 1   MGSGSLMLNIRRYLINPNQVH-------YHGQKLNTTTFNLARMNLILHVVDKE-----R 48

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + +  +F   + NPP+  KW     A +K   +    RFG  L   
Sbjct: 49  MNLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWS----AADKFLSDPRFERFGK-LAPK 103

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 104 SKADFAFLLHGFYHLK----ESGTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 156

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            LP ++FF T+I + +  L   ++      V  I+A+  WT+++    K
Sbjct: 157 GLPANIFFGTSIPSTVINLKKNRSRR---DVLFIDASQDWTNVKYLDTK 202


>gi|303258215|ref|ZP_07344222.1| type I restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
 gi|302858968|gb|EFL82052.1| type I restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
          Length = 547

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/549 (15%), Positives = 176/549 (32%), Gaps = 69/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDF-KHTDFGKVILPFTLLRRLECAL----EPTRSAV 55
           M+E       L + + K     +G      ++  +I    L + L        +     +
Sbjct: 1   MSEIKEKTVQLIDAL-KATCQAYGLGNDGNEYK-IITQVFLYKFLNDKFGYEVKNAPGVL 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDNAKA 113
            E+        +      +   +   +     +  L   +   NL +      F     +
Sbjct: 59  SEQLRNSEKWELAYADLSEEERFFLQSAISADVPILEPEHLIANLWNQQSKGDFDLIFDS 118

Query: 114 IFEDFDFSST-----------------------IARLEKAGLLYKICKNFSGIELHPD-T 149
              D  F +                            ++A     +              
Sbjct: 119 TMTDIAFKNADIFSTQTTANTKIPLFEPLTVFVTDPSQRAAFARALVDKLVNFSFEEAFG 178

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                 S+I+E+LI+ + +       ++ TP  +  +   LL+     L           
Sbjct: 179 QSYDFFSHIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDATNLHSIE------C 232

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ GTG  L    + + +         I     + L+       +   L   ++ D  
Sbjct: 233 YDPSAGTGTLLMALAHQIGEDRCTIFSQDISQRSNKMLKLNLLLNGLVSSLDNAIQGDTL 292

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                        S D    ++F + +SNPPF   +   ++ +          RF  G+P
Sbjct: 293 VS-------PYHKSDDGKELRQFDFVVSNPPFKMDFSDTREKIAAMPV-----RFWAGVP 340

Query: 330 KISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           K+             F+ H+ N L+      GR AIV+ +  +        E+ I + L+
Sbjct: 341 KVPKKKKESMAIYTCFIQHVLNSLK----DNGRGAIVVPTGFITAKS--GIENRILKKLV 394

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++ LI   V++P+++F  T     +       + E   KV LI+A+ L    ++    ++
Sbjct: 395 DDKLIYGCVSMPSNVFANTGTNVSVLFFDKSGSSE---KVILIDASKLGEEYKDSNGLKK 451

Query: 443 I-INDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           + +N  +  +I+  +  R N   FS  +D+     +   +         ++   ++  E 
Sbjct: 452 VRLNPVEVNKIITTFQKRLNVEDFSVAVDFNEIKEKGYSLSAGQYFEIKIEYEDISEEEF 511

Query: 501 DITWRKLSP 509
               ++   
Sbjct: 512 KNRMKEYES 520


>gi|301055839|ref|YP_003794050.1| type I restriction modification system subunit M [Bacillus
           anthracis CI]
 gi|300378008|gb|ADK06912.1| type I restriction modification system M subunit [Bacillus cereus
           biovar anthracis str. CI]
          Length = 484

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 168/464 (36%), Gaps = 59/464 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+       S      + + G+      F K   +  +N  +   +        
Sbjct: 35  LLFIKGLDEVEATKESEAMFLGIEYEGT------FPKEKQHLRWNKFKNLEAKQMFDVVS 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  +I +      + +  +     I  +    +L KI      IE+           +
Sbjct: 89  KEVFPFIKNLHGKKDSAYAKY-MDDAIFMIPTPQMLTKIVDGIDNIEMK----DRDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +  +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 144 LYEYLLLKVATAGTN--GQFRTPRHIIDMIVELM----------KPTPEDIIVDPAAGSA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++    S   +   L       + HG +++     +    M++  +E     
Sbjct: 192 GFLVSSGEYLRKNHSDLFLVQGLKQHFNNDMFHGFDMDRTMLRIGAMNMMLHGVE----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NIQ   +LS+      ++   L+NPPF       K +++ E  + +L +    + K
Sbjct: 247 --NPNIQYQDSLSESNKDEDKYTLVLANPPF-------KGSLDYEAVSADLLK----VTK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +     +IR+ ++E   +EAI
Sbjct: 294 TKKTELLFLALFIRMLKA----GGRCASIVPDGVLF--GSTKAHKDIRKEIIEKHKLEAI 347

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           V++P+ +F     ++T + I +        G  + +   D+     +   KR  I+ +  
Sbjct: 348 VSMPSGVFKPYAGVSTAIIIFTK----TGVGGTENVWFYDMEADGYSLDDKRSPIDANDI 403

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
             ++  + S E  K  +  +   F      V     +S    K 
Sbjct: 404 PDLVTRFHSLEREKERKRTEQSFFVPVEEIVENGYDLSINRYKE 447


>gi|257451972|ref|ZP_05617271.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|317058521|ref|ZP_07923006.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|313684197|gb|EFS21032.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
          Length = 256

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 28/264 (10%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             GQE+      +    M +  +  +     + +I++G TL   L   ++ F   +SN P
Sbjct: 14  FFGQEINMTNFNLARMNMFLHNVNYN-----NFSIKRGDTLLNPLHNEEKPFDAIVSNRP 68

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           +  KW  D D      +     RF P   L   S     F+MH  + L    +  GRAAI
Sbjct: 69  YSIKWVGDADPTLINDE-----RFAPAGKLAPKSYADYAFIMHSLSYL----SSKGRAAI 119

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V      +   A   E  IR++L++N+ ++ ++ LP +LFF T+IAT + +++  KTE R
Sbjct: 120 VCFPGIFYRKGA---ERTIRKYLVDNNFVDCVIQLPDNLFFGTSIATCILVMAKNKTENR 176

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR-MLDYRTFGYRR 477
              V  I+A+  +    N      I+ +     I++ + +RE  + +R ++D +      
Sbjct: 177 ---VLFIDASKEFKKETN----NNILEEKNINTIIEEFRNREEKEDTREIIDIKVLNQEI 229

Query: 478 IKVLRPLRMSFILDKTGLARLEAD 501
            + +R +          + +LE +
Sbjct: 230 EETVRKIDSLRASINEIIKKLEEE 253


>gi|238809498|dbj|BAH69288.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 503

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 137/354 (38%), Gaps = 43/354 (12%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K     F F      ++   LL ++    + ++   D         IYE +++   S  
Sbjct: 119 LKQKIARFVFEDAQNYMKDGVLLRQVINVINELDF-ADYKEKHEFGTIYETILKSLQSAG 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +  A +F TPR V      ++          +P +   + D  CGTGGFLT ++ H+ D 
Sbjct: 178 N--AGEFYTPRAVTDFMVKMI----------NPKLGEKIADFACGTGGFLTSSLKHLEDQ 225

Query: 231 GSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +   +     +G E +P  + +C+  MLI  ++       +   +      +D   
Sbjct: 226 KKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHDVDEPKIFHDNSLEK----RVQDYTE 281

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   L NPP+G     +K+AV+            P   + S+ + LF+  +  +L+ 
Sbjct: 282 ADKFDIILMNPPYGGS---EKEAVKNNF---------PADLRSSETADLFMNVIMYRLK- 328

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR A++L    LF   A + +  I+  LL+   +  I+ +P  +F   T+I T +
Sbjct: 329 ---KKGRCAVILPDGFLF--GADNAKVAIKTKLLKEFNLHTIIRMPHSVFAPYTSITTNI 383

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
               +    E   +V                 K + I  +   Q++  + +RE 
Sbjct: 384 LFFDHTHPTE---EVWF--YRMDMPEGYKNFSKTKPIQLEHFDQVIKWWDNREE 432


>gi|319777321|ref|YP_004136972.1| type i restriction-modification system, m subunit [Mycoplasma
           fermentans M64]
 gi|318038396|gb|ADV34595.1| Type I restriction-modification system, M subunit [Mycoplasma
           fermentans M64]
          Length = 500

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 137/354 (38%), Gaps = 43/354 (12%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K     F F      ++   LL ++    + ++   D         IYE +++   S  
Sbjct: 116 LKQKIARFVFEDAQNYMKDGVLLRQVINVINELDF-ADYKEKHEFGTIYETILKSLQSAG 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +  A +F TPR V      ++          +P +   + D  CGTGGFLT ++ H+ D 
Sbjct: 175 N--AGEFYTPRAVTDFMVKMI----------NPKLGEKIADFACGTGGFLTSSLKHLEDQ 222

Query: 231 GSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +   +     +G E +P  + +C+  MLI  ++       +   +      +D   
Sbjct: 223 KKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHDVDEPKIFHDNSLEK----RVQDYTE 278

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   L NPP+G     +K+AV+            P   + S+ + LF+  +  +L+ 
Sbjct: 279 ADKFDIILMNPPYGGS---EKEAVKNNF---------PADLRSSETADLFMNVIMYRLK- 325

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR A++L    LF   A + +  I+  LL+   +  I+ +P  +F   T+I T +
Sbjct: 326 ---KKGRCAVILPDGFLF--GADNAKVAIKTKLLKEFNLHTIIRMPHSVFAPYTSITTNI 380

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
               +    E   +V                 K + I  +   Q++  + +RE 
Sbjct: 381 LFFDHTHPTE---EVWF--YRMDMPEGYKNFSKTKPIQLEHFDQVIKWWDNREE 429


>gi|226940929|ref|YP_002796003.1| HsdM [Laribacter hongkongensis HLHK9]
 gi|226715856|gb|ACO74994.1| HsdM [Laribacter hongkongensis HLHK9]
          Length = 283

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 11/249 (4%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +A  + Y             ++          E +  T G  +      +  A+  D   
Sbjct: 45  TANEQGYPVLTDPPPATLDTLRDCALLMLPAWEKAERTSGIEHAGQRWLTTSAALQDIRD 104

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +             ++AGLLY + + F+ I+LHP +V +  M  ++E LIR+F    +E
Sbjct: 105 VLLAGAVLGEQWVTADRAGLLYLVTEKFANIDLHPASVDNASMGLVFEELIRKFAEISNE 164

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LL   DD +      ++RTLYDPT GTGG L+ A   +A+   
Sbjct: 165 TAGEHFTPREVIRLMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVAGEFLAEHNP 224

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +    L   GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F
Sbjct: 225 QAR----LTLFGQELNDESYAICKADMLIKGQD-------VGNIVAGNTLSDDGHGARKF 273

Query: 293 HYCLSNPPF 301
            Y L + P+
Sbjct: 274 DYMLCSAPW 282


>gi|289706682|ref|ZP_06503030.1| N-6 DNA Methylase [Micrococcus luteus SK58]
 gi|289556602|gb|EFD49945.1| N-6 DNA Methylase [Micrococcus luteus SK58]
          Length = 490

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 161/492 (32%), Gaps = 67/492 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLG 92
           I     LRRL+ A     +  R        +  + D +        +  +   ++     
Sbjct: 32  ITYLLFLRRLDEAQTQAEAKARRTNQPVETTIFDADHQHLRWHQLKNVASDELFARMDRE 91

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                  L   I            D  F+     +  A +L         + L       
Sbjct: 92  VFPFLRRLGQQIGGEDSTYAHHMRDARFT-----IPNARMLATAVDLIDKLPLTN----R 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +  +        F TPR ++ L   +           +P     + DP
Sbjct: 143 DTTGDLYEYLLSKLSTAGRN--GQFRTPRHIIDLMVRMT----------APTPEDVIVDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLE 265
            CGT GFL  A  ++ +                  + HG + +     +    ML+  +E
Sbjct: 191 ACGTAGFLVGASEYLREEHPELFFDMNQRLHFNRRMFHGYDFDSTMLRIASMNMLMHGVE 250

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           S P      ++ QG++         ++   L+NPPF          ++ E  + +L R  
Sbjct: 251 S-PDIAYRDSLAQGASDG----DAGKYSLILANPPFAGS-------LDAEGVSSDLQR-- 296

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LF              GGRAA+++    LF   +     ++RR L+E+ 
Sbjct: 297 --VVKTKKTELLF----LALFLRLLQPGGRAAVIVPEGVLF--GSSKAHKDLRRMLVEDH 348

Query: 386 LIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE------- 437
            ++A+V LP  +F     ++T +    N         V   +      S+ ++       
Sbjct: 349 HLQAVVKLPAGVFKPYAGVSTAILFFRNDGPGS-TDDVWFYDVRADGFSLDDKRTPVEAN 407

Query: 438 ------GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                  + +    +  R +    ++  +     +  D     Y+ +++        +  
Sbjct: 408 DLPDLVQRWQNPAGEKDRPRTAQSFLVPKADIVEQGYDLSLNRYKELEIEEVEHRDPLEI 467

Query: 492 KTGLARLEADIT 503
              L +L+A+I 
Sbjct: 468 LVDLEQLDAEIA 479


>gi|315038773|ref|YP_004032341.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276906|gb|ADQ59546.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112]
          Length = 522

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 164/479 (34%), Gaps = 74/479 (15%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              L     ++ E     G   ID                 + L +        +L  Y 
Sbjct: 52  SEMLGIPFKSIFEGKKVIGNQEIDGRKLKWSVFRDLPAQQMFDLISNCVFPFIKDLPRYE 111

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM--------- 155
            S  +   + +  +     + ++  A LL K   +   I    D V    +         
Sbjct: 112 ESMDETQDSAYSKY-MGDAVFKIPSAELLSKAVDSLDSIYETMDKVQKDELAQENKDRND 170

Query: 156 -----SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 ++YE+L+ +  +        F TPR ++ +   L+          +P     + 
Sbjct: 171 KPDVQGDLYEYLLSKLSTAGRN--GQFRTPRHIIKMMVKLM----------NPTPDDKIA 218

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHK----------IPPILVPHGQELEPETHAVCVAGML 260
           DP CGT GFL  A  ++ +     K               +  G +++     +    M+
Sbjct: 219 DPACGTSGFLVAAAEYLKNNPETEKEIFFNREKRNYYKSDMFTGYDMDGTMLRIGAMNMM 278

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
              +        + NIQ   +LS        +   L+NPPF  K   D D V        
Sbjct: 279 THGI-------TNPNIQYRDSLSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLLK-- 327

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LFL      L++    GGR A ++    LF   +      IR+ 
Sbjct: 328 -------VCKTKKTELLFLALFLRMLKV----GGRCACIVPDGVLF--GSSRAHKAIRKQ 374

Query: 381 LLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E + +EA++++P+ +F     ++T + I +         KV   + T    S+ +   
Sbjct: 375 LVEENRLEAVISMPSGVFKPYAGVSTAILIFTKT-NHGGTDKVWFYDMTADGYSLDD--- 430

Query: 440 KRRIINDDQRRQILDIYVS------RENGKFSRMLDYRTF--GYRRIKVLRPLRMSFIL 490
           KR  +++D    I++ + +      R+  + S  +D +        + + R   + ++ 
Sbjct: 431 KRTKVDEDDIPDIIERFNNLDEETDRKRTEKSFFVDKKEIVDNGYDLSINRYKEIEYVP 489


>gi|323358027|ref|YP_004224423.1| type I restriction-modification system methyltransferase subunit
           [Microbacterium testaceum StLB037]
 gi|323274398|dbj|BAJ74543.1| type I restriction-modification system methyltransferase subunit
           [Microbacterium testaceum StLB037]
          Length = 494

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 84/505 (16%), Positives = 168/505 (33%), Gaps = 87/505 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     ++RL+       +   +K   FG     +++ +   GY            L  +
Sbjct: 32  ITYLLFIKRLD----ELHTKAEQKAARFGDP---IQNPIFPDGYDSDLPGRRPFRDLRWS 84

Query: 95  NTRNNLESYI-ASFSDNAKAIFEDF---------DFSSTIARLEKAGLLYKICKNFSGIE 144
              N   + +    S++                 +       +    LL K+    + I 
Sbjct: 85  VFTNYSPAEMFDVVSEHVFPWLRRLGAQGSSYARNMRDARFTIPTPALLTKVVDLLAEIP 144

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +           +IYE+++ R  +  +     F T R ++ L   L          + P 
Sbjct: 145 ME----DRDTKGDIYEYMLLRLSTSGTN--GQFRTARHIIQLMVDL----------QQPR 188

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVA 257
               + DP  GT GFL  A  ++               H       G + +     +   
Sbjct: 189 PDDRIIDPAVGTAGFLITAEEYLRAHHPEIWTDAATRAHFNGPMFTGYDSDASMARIASM 248

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            ML+  +E       +  I++  +LS+       +   L+NPPF          ++ E  
Sbjct: 249 NMLLHGVE-------NPTIERADSLSEGHPGLNEYTLVLANPPFAGS-------LDYETV 294

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             +L +    + K     +LFL+ +   L      GGRAA+++    LF   + +    +
Sbjct: 295 AKDLQK----VVKTRKTELLFLVLMIRMLR----NGGRAAVIVPEGVLF--GSSNAHKAV 344

Query: 378 RRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R+ L++   ++A++ LP+  F   T ++T + + +        G    +   D+      
Sbjct: 345 RKMLVDEHKLDAVIKLPSGTFKPYTGVSTAILLFTK----TSSGGTDHVWFYDVRADGMT 400

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSR-------------MLDYRT----FGYRRIK 479
              KR  I  +    +L  +  R + + +R             ++D         Y+ I+
Sbjct: 401 LDDKRTPIEANDLPDVLARWRER-DAEAARARTDQSFVVPKQEIVDNDYDLSLNRYKEIE 459

Query: 480 VLRPLRMSFILDKTGLARLEADITW 504
           +      S +     L  LE  I  
Sbjct: 460 IEEVEHRSPLKILDELDALEVGIQD 484


>gi|255690851|ref|ZP_05414526.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623483|gb|EEX46354.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 505

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 67/443 (15%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
                  + +S  +   +      E         N      +  A        +F     
Sbjct: 40  DAQEETWEYKSRREKKEFKSIIPEELRWRNWAVDNADGEALTGDALLEFVNARLFPTLKA 99

Query: 120 -----------------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                            FS     ++   LL ++      I+   D        +IYE +
Sbjct: 100 LPVNEDTPRGKTIVKEIFSDLNQYMKNGILLRQVVNVIDEIDFS-DVEDRHTFGDIYEGI 158

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++   S  +  A +F TPR +      +L          +P +  +  D T GTGGFLT 
Sbjct: 159 LKDLQSAGN--AGEFYTPRALTDFMVEIL----------NPQLGESFGDFTSGTGGFLTS 206

Query: 223 AMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQG 279
           A+NH+           +      GQE +P  + + +  +L+  +E+ +     S   + G
Sbjct: 207 ALNHLYKQVKTTNDVKLFQTAVIGQEWKPLPYLLSITNLLVHDIEAPNIIHCDSLGTRVG 266

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                D     + +    NPP+G   E                   P   + S+ + LF+
Sbjct: 267 DFKECD-----KVNVIAMNPPYGGSTEASVK------------NNFPSDMRSSETADLFM 309

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           + +  +L+      GRAA+++    LF       +  I+  LL++  +  I+ LP  +F 
Sbjct: 310 VLIMYRLKA----NGRAAVIVPDGFLFGVD--GAKLAIKTKLLKDFNLHTIIRLPGSIFS 363

Query: 400 -RTNIATYLWILSNRKTEERRG--KVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDI 455
             T+IAT +   +N + E+       +      L          K + +  +  + I + 
Sbjct: 364 PYTSIATNILFFNNERVEDAPDGYSTKETWFYRLDMPDGYKHFSKTKPMKLEHCQPIKEW 423

Query: 456 YVSREN------GKFSRMLDYRT 472
           +  R+        + SR    + 
Sbjct: 424 WNDRKEIVSQDGNEKSRCFSVQD 446


>gi|254481842|ref|ZP_05095085.1| N-6 DNA Methylase family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037971|gb|EEB78635.1| N-6 DNA Methylase family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 521

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/504 (16%), Positives = 185/504 (36%), Gaps = 84/504 (16%)

Query: 38  FTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           F +  RL    E +     E+    F     D +  ++   +    +++  L        
Sbjct: 34  FLMYARLLDMNETSDEKRAERSGKTFNRRFTDEQQHLRWQNFRHIESADELLRV-----V 88

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           R+ L  +  + S    ++F +F        ++K  LL K     + + L           
Sbjct: 89  RDELFPFFKTTSGEG-SLFAEF-MKDAQLMIQKPALLRKAIDMVNDLPLS----QGDTKG 142

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +        F TPR ++     ++           P     + DP CGT
Sbjct: 143 DLYEYLLSKLTTAGIN--GQFRTPRHIIRAMVDMM----------DPKATDRICDPACGT 190

Query: 217 GGFLTDAMNHVADC------------------------------GSHHKIPPILVPHGQE 246
            GFL+     + +                                 H +     + HG +
Sbjct: 191 AGFLSTTYEFMLEKYSSKDGTIREMVVDENGEEQEQVIYTGDLLADHREHVDRDMFHGFD 250

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +     +    +++  + ++P       + QG          + F   L+NPPF     
Sbjct: 251 FDATMLRIAAMNLVMHGV-TEPDIHYQDTLSQGFIERFPQSAREGFDLVLANPPF----- 304

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             K ++++E  + E+ R      K     +LF+  +   L++    GGRAA+++    LF
Sbjct: 305 --KGSLDEEDVDPEILR----TVKTKKTELLFIALILRMLKV----GGRAAVIVPDGVLF 354

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLI 425
              +     ++R+ ++E++ +EAIV+LP+ +F     ++T + I +     +R      +
Sbjct: 355 --GSSKAHQQLRKSMIEDNQLEAIVSLPSGVFKPYAGVSTAVMIFTKGGQTDR------V 406

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
              DL     +   KR  ++ +    + D+       ++S +      G    +      
Sbjct: 407 WFYDLQADGFSLDDKRTPLSGEGSDDLPDLVEQW--AEYSHLA---AVGKSVEQWNDKTA 461

Query: 486 MSFILDKTGLARLEADITWRKLSP 509
            +F+++KT +A  + D++ ++   
Sbjct: 462 KAFLVEKTEIASNKYDLSIKRYKE 485


>gi|317505570|ref|ZP_07963481.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella salivae DSM 15606]
 gi|315663318|gb|EFV03074.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella salivae DSM 15606]
          Length = 505

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 140/365 (38%), Gaps = 47/365 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++    + IE   D     +  +IYE +++   S  +  A +F T
Sbjct: 117 FEDLNQYMKNGILLRQVINIINEIEFD-DADDRHMFGDIYEGILKDLQSAGN--AGEFYT 173

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR +       L          +P +  T+ D T GTGGFLT A+N++           +
Sbjct: 174 PRALTDFIIQQL----------NPKLGETVGDFTSGTGGFLTSALNYLNKQIKTTNDGRL 223

Query: 240 LVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQE +P  + + +  +L+  +ES   R         ST   D     +      
Sbjct: 224 FQNAAVGQEWKPLPYLLSITNLLLHDVESPNIRHCDSL----STKMSDFKESDKVDVIAM 279

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G   +    +              P   + S+ + LF++ +  +L+      GRAA
Sbjct: 280 NPPYGGSTDASVKS------------NFPMAFRSSETADLFMVLIMYRLK----KDGRAA 323

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE 416
           +++    LF   A   +  I+  LL+   +  I+ LP  +F   T+IAT +   +N K +
Sbjct: 324 VIVPDGFLF--GADGAKLAIKSELLKKFNLHTIIRLPGSIFAPYTSIATNILFFNNEKAD 381

Query: 417 --ERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSREN------GKFSRM 467
             E     + I    +          K R +  +  + I+D +  R+        + SR 
Sbjct: 382 GAEEGLSTKDIWFYRMDMPEGYKHFSKTRSMKLEHCQPIIDWWNDRKEIISEDGDEKSRC 441

Query: 468 LDYRT 472
              + 
Sbjct: 442 FTAQQ 446


>gi|190150799|ref|YP_001969324.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307264082|ref|ZP_07545679.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915930|gb|ACE62182.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870560|gb|EFN02307.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 489

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 166/457 (36%), Gaps = 64/457 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS----EYSLSTLGST 94
             L+ +  A E     + + Y +     +  +++ K        T      +  + L   
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNKDGKAMTGDELLNFVNNELFPA 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I           
Sbjct: 93  LKNLPISAETPMNQKIIRAAFEDNN-----NYMKNGILLRQVINIIDEINF-EQYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V      ++           P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMAKMI----------KPRLGEKIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +           +L    +G E +   H +C+  +L+  ++       
Sbjct: 195 GTGGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID------- 247

Query: 273 SKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + N+   +TL K   D     +F   L NPP+G              +  ++    P   
Sbjct: 248 NPNVHHDNTLEKPVKDYTENDKFDVILMNPPYGGS------------EIEQIKTNFPSAL 295

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + S+ + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  
Sbjct: 296 RSSETADLFMSVIMYRLK----KNGRVAIVLPDGFLFGTD--NAKMAIKQKLMSEMNLHT 349

Query: 390 IVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP  +F   T+I T +    N +  +     +L +    + +       +     + 
Sbjct: 350 VIRLPHSVFAPYTSITTNILFFDNTEPTKETWFYRL-DMPQGYKNFSKTKPMKL----EH 404

Query: 449 RRQILDIYVSR---ENGKF--SRMLDYRTFGYRRIKV 480
             ++++ + +R   E   F  +R   Y+    R+  +
Sbjct: 405 FNEVMEWWHNRQAIEIDGFDKARCYSYQEIADRQFNI 441


>gi|296448296|ref|ZP_06890189.1| N-6 DNA methylase [Methylosinus trichosporium OB3b]
 gi|296254211|gb|EFH01345.1| N-6 DNA methylase [Methylosinus trichosporium OB3b]
          Length = 512

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 144/400 (36%), Gaps = 54/400 (13%)

Query: 38  FTLLRRLECALE--PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              ++RL+   E    ++    + L         ++  +      ++  ++         
Sbjct: 35  LIFIKRLDEMQENEERKATTLRRKLERRIFPEGADARGEPYENLRWSRFKHFAGPEMFRI 94

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
              ++  +I + + +  A            ++  A LL K+    S IE+          
Sbjct: 95  VDEHVFPFIRALNGDGGAYARH--MRDARFQIPSAQLLAKVVDKLSQIEMG----DRDTK 148

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+++ +  S        F TPR ++ L   L+           P     + DP  G
Sbjct: 149 GDVYEYMLVKIASAG--QNGQFRTPRHIIALMVELM----------QPRPEDAICDPAAG 196

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A  ++    S       L  H       G + +P    +    M +  +E   
Sbjct: 197 TCGFLVAAGEYLRKHHSGLFRDAKLRAHFHERLFNGFDFDPTMLRIGAMNMALHGVE--- 253

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               + N+    +L++D      R+   L+NPPF    + +  A +              
Sbjct: 254 ----NANVAYRDSLAEDHSEDAGRYSLVLANPPFAGSLDYETTAADLRQ----------- 298

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LFL      L+     GGRAA+++    LF   +     ++RR L+E + +
Sbjct: 299 IVKTKKTELLFLALFLRLLKT----GGRAAVIVPDGVLF--GSSKAHKDLRRLLVEENKL 352

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
           EA+V LP+ +F     ++T + + + R        V   +
Sbjct: 353 EAVVKLPSGVFRPYAGVSTAILVFT-RTGVGGTDHVWFYD 391


>gi|54024730|ref|YP_118972.1| putative restriction-modification system methyltransferase
           [Nocardia farcinica IFM 10152]
 gi|54016238|dbj|BAD57608.1| putative restriction-modification system methyltransferase
           [Nocardia farcinica IFM 10152]
          Length = 514

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/429 (17%), Positives = 149/429 (34%), Gaps = 62/429 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF----YNTSEYSLST 90
           I     +RRL+   E TR+  R   LA               G  +    ++      + 
Sbjct: 32  ITYLLFIRRLDD--EQTRALERANLLAQPLEGNPFPEGNDPDGRPYNDLRWSVFRDRHAE 89

Query: 91  LGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                  N +  +I      D+  A F           +   G+L ++      + +   
Sbjct: 90  EMFDIVANRVFPFIKEMRGEDSTYAHF----MKDARLTIPNPGMLQRVVDRLDKVPMEN- 144

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   +IYE+L+ +  S        F TPR ++ L   ++          +P    T
Sbjct: 145 ---RDTKGDIYEYLLAKIASAG--QNGQFRTPRHIIELMVHMM----------APKPGDT 189

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  GT GFL  A  ++    +               + HG + +     +    ML+
Sbjct: 190 IVDPASGTCGFLVAASEYMRAHHADAINSGAGRHHYHHKMFHGFDFDNTMLRIGSMNMLL 249

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +E            + S    +    + +   L+NPPF    + +  A + +      
Sbjct: 250 HGIE------QPDIRYRDSLAEANTGDAEAYSLVLANPPFAGSLDYENTAKDLQQ----- 298

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                 + K     +LFL      L+     GGRAA+++    LF   +     E+RR L
Sbjct: 299 ------IAKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRIL 346

Query: 382 LENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E   ++A+V LP+ +F     ++T +   +   +      V   +      S+  + K+
Sbjct: 347 VEEQKLDAVVKLPSGVFKPYAGVSTAILFFTKTNSGG-TDNVWFYDVRAEGYSL--DDKR 403

Query: 441 RRIINDDQR 449
             ++++D+ 
Sbjct: 404 SALLSEDKI 412


>gi|86130654|ref|ZP_01049254.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819329|gb|EAQ40488.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 544

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 205/560 (36%), Gaps = 95/560 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     TRS ++++      + +D           F     +        NTR
Sbjct: 35  LIFIKNLDEV--ETRSELKKQ-----RTGVDFTPIFNEEQQQF----RWKNIKEMDVNTR 83

Query: 98  NNLESY----IASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + L +     I  F  N       F       +   KA +L  + +    +++       
Sbjct: 84  HMLFADTVSGIFPFLRNLGVETSAFAKHMRNASYGMKAQVLDSVIEQLDQLDMDEQDAK- 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +I+E+++ +   E    +  F TPR ++ L   L+           P +  T+ DP
Sbjct: 143 ---GDIFEYMLSKM--EGGGTSGQFRTPRHIIRLMVELM----------QPTLEDTICDP 187

Query: 213 TCGTGGFLTDAMNH------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + GT GFL  A  +      V +  +  +    ++ +G E +     +    + +  +E+
Sbjct: 188 SAGTAGFLVGAKEYIDTHYDVMEREAAKEHIDTMMFNGMEFDATMLRIASMNLFLHGVEA 247

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D+         +SKD      +   L+NPPF       K  ++KE    +L     
Sbjct: 248 PNIIDV-------DAVSKDNDIADAYTLVLANPPF-------KGTIDKESIASDLKT--- 290

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +   S   +LFL  +  +++     GGRAA+++    LF   +      IR  ++ N  
Sbjct: 291 -VTSTSKTELLFLALMLRQMK----MGGRAAVIVPDGVLF--GSSKAHKSIREEIVANHK 343

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSN-----------------RKTEERRGKVQLINAT 428
           +EA++++P+ +F     ++T + I +                   K+ + +    L++A 
Sbjct: 344 LEAVISMPSGVFKPYAGVSTAIMIFTKTGSGGTDHVWFYDMLADGKSLDDKRN-LLVDAE 402

Query: 429 --------DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
                   D +T + +E  K  + ++    QILD Y   ++  F +M        +    
Sbjct: 403 TFDAFSFGDAFTKVTSEELK-TLHDNFNLPQILDHYKYLKSDYFEKMHTAEGELLQVKDT 461

Query: 481 LRPLRMSFILDKTGLARLEADITWRK----LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              L  S  LD T      AD T +     L+ + ++ W   +    + +Y     ++  
Sbjct: 462 PENLGFSNFLDGT-CTHNYADRTSQSFLVPLAEIKENDWDLSINRYKEIVYEEVEYDAPT 520

Query: 537 KESIKSNEAKTLKVKASKSF 556
           +   + N+    ++   +  
Sbjct: 521 EIIGRINKLSEERIDLMQQL 540


>gi|303250875|ref|ZP_07337068.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307246972|ref|ZP_07529036.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253061|ref|ZP_07534945.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255980|ref|ZP_07537776.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259760|ref|ZP_07541480.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262530|ref|ZP_07544172.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302650290|gb|EFL80453.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852114|gb|EFM84355.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306859472|gb|EFM91501.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861070|gb|EFM93068.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866150|gb|EFM98018.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306867765|gb|EFM99599.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 489

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 163/454 (35%), Gaps = 58/454 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS----EYSLSTLGST 94
             L+ +  A E     + + Y +     +  +++ K        T      +  + L   
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNKDGKAMTGDELLNFVNNELFPA 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I           
Sbjct: 93  LKNLPISAETPMNQKIIRAAFEDNN-----NYMKNGILLRQVINIIDEINF-EQYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V      ++           P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMAKMI----------KPRLGEKIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +           +L    +G E +   H +C+  +L+  +++      
Sbjct: 195 GTGGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHD 254

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      KD     +F   L NPP+G              +  ++    P   + S
Sbjct: 255 NALEK----PVKDYTENDKFDVILMNPPYGGS------------EIEQIKTNFPSALRSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLK----KNGRVAIVLPDGFLFGTD--NAKMAIKQKLMSEMNLHTVIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L +    + +       +     +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL-DMPQGYKNFSKTKPMKL----EHFNE 407

Query: 452 ILDIYVSR---ENGKF--SRMLDYRTFGYRRIKV 480
           +++ + +R   E   F  +R   Y+    R+  +
Sbjct: 408 VMEWWHNRQAIEIDGFDKARCYSYQEIADRQFNI 441


>gi|327183905|gb|AEA32352.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 522

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 163/479 (34%), Gaps = 74/479 (15%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              L     ++ E     G   ID                 + L +        +L  Y 
Sbjct: 52  SEMLGIPFKSIFEGKKVIGNQEIDGRKLKWSVFRDLPAQQMFDLISNCVFPFIKDLPRYE 111

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM--------- 155
            S  +   + +  +     + ++  A LL K   +   I    D V    +         
Sbjct: 112 ESMDETQDSAYSKY-MGDAVFKIPSAELLSKAVDSLDSIYETMDKVQKDELAQENKDRND 170

Query: 156 -----SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 ++YE+L+ +  +        F TPR ++ +   L+          +P     + 
Sbjct: 171 KPDVQGDLYEYLLSKLSTAGRN--GQFRTPRHIIKMMVKLM----------NPTPDDKIA 218

Query: 211 DPTCGTGGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVCVAGML 260
           DP CGT GFL  A  ++ +                     +  G +++     +    M+
Sbjct: 219 DPACGTSGFLVAAAEYLKNNPETEKEIFFNKEKRNYYKSDMFTGYDMDGTMLRIGAMNMM 278

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
              +        + NIQ   +LS        +   L+NPPF  K   D D V        
Sbjct: 279 THGI-------TNPNIQYRDSLSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLLK-- 327

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LFL      L++    GGR A ++    LF   +      IR+ 
Sbjct: 328 -------VCKTKKTELLFLALFLRMLKV----GGRCACIVPDGVLF--GSSRAHKAIRKQ 374

Query: 381 LLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E + +EA++++P+ +F     ++T + I +         KV   + T    S+ +   
Sbjct: 375 LVEENRLEAVISMPSGVFKPYAGVSTAILIFTKT-NHGGTDKVWFYDMTADGYSLDD--- 430

Query: 440 KRRIINDDQRRQILDIYVS------RENGKFSRMLDYRTF--GYRRIKVLRPLRMSFIL 490
           KR  +++D    I++ + +      R+  + S  +D +        + + R   + ++ 
Sbjct: 431 KRTKVDEDDIPDIIERFNNLDKEIDRKRTEKSFFVDKKEIVDNGYDLSINRYKEIEYVP 489


>gi|304409997|ref|ZP_07391616.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|307302290|ref|ZP_07582048.1| N-6 DNA methylase [Shewanella baltica BA175]
 gi|304351406|gb|EFM15805.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|306914328|gb|EFN44749.1| N-6 DNA methylase [Shewanella baltica BA175]
          Length = 640

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 157/470 (33%), Gaps = 82/470 (17%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFTLLRRLECALEPTRSAV-------- 55
            S  SL++F+    + +      +   + +  L + L  R+  A E              
Sbjct: 15  ASTQSLSSFVKSICDVMRRSNCASAL-QYVPELTWILFLRILDAQEAKAHEEAEVLGASF 73

Query: 56  ----------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLE 101
                     R+    F  ++ + E+    +    +      L   G           L 
Sbjct: 74  TPALNSPYRWRDWAAPFPKNDNEKENHPTTSEGKPFGWKRQELFAAGDGKLFDFINKELL 133

Query: 102 SYIASFSDNAKAIFEDFDFSSTIA------------RLEKAGLLYKICKNFSGIEL-HPD 148
            ++ S   + +    +   +                R++    L  I      I + H D
Sbjct: 134 PHLHSLDVDPQTGLPNPAANRKQRIMGRTMTAVERVRVDSEANLRDILDKVHEINIDHVD 193

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +S +YE L+ + G + +     F TPR+V+      +           P + +T
Sbjct: 194 DQHFFTLSQVYEDLLLKMGEK-NSDGGQFFTPREVIRAMVHTV----------KPELGQT 242

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLIR 262
           +YDP CGTGGFL  A  H+A           L         G+E E     + +A +++ 
Sbjct: 243 VYDPCCGTGGFLAIAYEHIARQLGQSPTSTDLDTLKHDTFFGREKENLVFPIALANLVLH 302

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            ++       +   ++ +          +F   L+NPPFG K  KD              
Sbjct: 303 GIDQPNLWHGNSLTRRATYAGLFEQAPTQFDVILTNPPFGGKEGKDAQKN---------- 352

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  + S   +LF+  +  +L       G  AIVL    LF     S   E +R L+
Sbjct: 353 ----FAFETSSTQVLFVQDILAEL----APKGTCAIVLDEGLLFR-TNESAFVETKRKLV 403

Query: 383 ENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +   + AI++LP  +F      + T L   +  K  E+      I   DL
Sbjct: 404 DECDLWAILSLPGGVFSTAGAGVKTNLLFFTKGKKTEK------IWYYDL 447


>gi|284037968|ref|YP_003387898.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma
           linguale DSM 74]
 gi|283817261|gb|ADB39099.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma
           linguale DSM 74]
          Length = 502

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 140/372 (37%), Gaps = 54/372 (14%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---------LESYIASF---SD 109
           F   +I++E              ++      +     +         L   + +      
Sbjct: 41  FDDKDIEMELLADDYQSPIPTDCQWRNWAADNEGITGDELQQFVDLTLFPTLKNLPVKDG 100

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N +A+     F      ++    + KIC   + I+ +  +    +  ++YE +++   S 
Sbjct: 101 NRRALLIREVFEGNNNYMKSGINIRKICNKLNEIDFN-SSEDRHLFGDLYEGILKELQSA 159

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
               + +F TPR V    T ++          +P +   ++DP CGTGGFL +A+ H+  
Sbjct: 160 G--DSGEFYTPRAVTQFMTEMV----------NPRLGEIIFDPACGTGGFLVNAIEHIRQ 207

Query: 230 ---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKD 285
                   ++       G E +P  + + +  +++  +E  +     S   +  S   +D
Sbjct: 208 REVNSVDDRLTLQKTIRGCEYKPLPYELALTNLILHDIEVPNIEYGDSLGREYSSIRDRD 267

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                R    L+NPPFG               NG  G F P   +  + + LFL+ + N 
Sbjct: 268 -----RVDVILANPPFGGTVA-----------NGNEGNF-PANFRTRESADLFLVLIVNL 310

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L       GRAA+VL    L        +  +R+ LLE+  +  IV LP  +F     +A
Sbjct: 311 LRT----NGRAALVLPDGSL---TGEGVKQRVRQKLLEDCDLHTIVRLPNSVFQPYATVA 363

Query: 405 TYLWILSNRKTE 416
           T L     ++T 
Sbjct: 364 TNLLFFEKKRTT 375


>gi|303253792|ref|ZP_07339927.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248452|ref|ZP_07530472.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647376|gb|EFL77597.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855020|gb|EFM87203.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 489

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 164/454 (36%), Gaps = 58/454 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS----EYSLSTLGST 94
             L+ +  A E     + + Y +     +  +++ K        T      +  + L   
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNKDGKAMTGDELLNFVNNELFPA 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I           
Sbjct: 93  LKNLPISAETPMNQKIIRAAFEDNN-----NYMKNGILLRQVINIIDEINF-EQYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V      ++           P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMAKMI----------KPRLGEKIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +           +L    +G E +   H +C+  +L+  +++      
Sbjct: 195 GTGGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHD 254

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      KD     +F   L NPP+G              +  ++    P   + S
Sbjct: 255 NALEK----PVKDYTDSDKFDVILMNPPYGGS------------EIEQIKTNFPSALRSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLK----KNGRVAIVLPDGFLFGTD--NAKVAIKQKLMTEMNLHTVIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L +  + + +       +     +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKDTWFYRL-DMPEGYKNFSKTKPMKL----EHFNE 407

Query: 452 ILDIYVSR---ENGKF--SRMLDYRTFGYRRIKV 480
           +++ + +R   E   F  +R   Y+    R+  +
Sbjct: 408 VMEWWHNRQAIEIDGFDKARCYSYQEIADRQFNI 441


>gi|289644883|ref|ZP_06476931.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata]
 gi|289505312|gb|EFD26363.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata]
          Length = 564

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 112/300 (37%), Gaps = 35/300 (11%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+ +  +       +F TP  V  +   LL           P     + DP CG+G  L
Sbjct: 219 FLLEQLAAVQGRRGTEFFTPPSVTRVIMELL----------DPRPDARICDPCCGSGELL 268

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A          H      V HG  L+ ++  +      +  L +D      + ++   
Sbjct: 269 AAAG--TRARSRRHSTESAQVLHGYALDQQSWRLAQLTAALHGLPADLGEYPVEPLRLHH 326

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             +       R+     NPPF      D D   + H       +  G P   + +  +L 
Sbjct: 327 QRTT------RYDVVAMNPPFNMSGWSDGDPAHRPH-------WRYGPPPRHNANFAWLQ 373

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           + A  L    + GG A +++  S          E  IR  ++E+ ++E +VALP+ LF  
Sbjct: 374 YAALLL----DDGGSAVVIMPHSA--ATTDNPAEVTIRTNMIEDGVMECVVALPSRLFRE 427

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+    LW+L    + + R  V  ++AT + T I    +  RI+ DD   +I   Y   +
Sbjct: 428 TSAPATLWVLRRP-SRDSRRDVLFVDATAVGTVI---DRDYRILTDDDVARITGAYQDWK 483


>gi|317506901|ref|ZP_07964673.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254829|gb|EFV14127.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 484

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 143/411 (34%), Gaps = 58/411 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+         + E      G  I+   F+       +   + +   +      
Sbjct: 35  LLFIRRLDDV-----QTLAENRARHTGGAIENPVFLPGQSQLRWREFKNAAPVVMHKIVA 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           + +  ++ +  D +               +    LL K+      I +           +
Sbjct: 90  DEVFPFLRALGDGSTYS---EHMKDARFTIPTPALLSKVVDMLDDIPMT----DRDTNGD 142

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ L   +            P     + DP CGT 
Sbjct: 143 LYEYLLSKIAAAGVN--GQFRTPRHIIDLMVKMT----------DPQPKDEICDPACGTA 190

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++ D  +         K     + HG + +     +    ML   +E+    
Sbjct: 191 GFLVAASEYIRDTHADALLGEEQRKHFHRSMFHGYDFDSTMLRIGSMNMLQHGIEA---- 246

Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
               +I+   +LS+      +++   L+NPPF          ++ E  + +L R    + 
Sbjct: 247 ---PDIRYRDSLSEGASEDAEKYTLILANPPFAGS-------LDYEATSKDLQR----VV 292

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LF              GGRAA+++    LF   +      +R+ L+E   +EA
Sbjct: 293 KTKKTELLF----LALFLKLLKPGGRAAVIVPDGVLF--GSSKAHKALRQTLVEEQKLEA 346

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +V LP+ +F     ++T +   +   + +  G V   +      S+ ++  
Sbjct: 347 VVKLPSGVFRPYAGVSTAILFFTKTDSAD-TGNVWFYDVRADGFSLDDKRN 396


>gi|226952351|ref|ZP_03822815.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244]
 gi|226836903|gb|EEH69286.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244]
          Length = 493

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/513 (16%), Positives = 174/513 (33%), Gaps = 80/513 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96
              +RRL+            K         ++E  +          S++   TLG   T 
Sbjct: 35  LLFIRRLDEI-------QITKEKKANRLKREVEQPIFTPEQDNLRWSKF--ITLGDAATL 85

Query: 97  ----RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                N +  +I S        +           +    LL K+    + + +       
Sbjct: 86  YNTMGNKVFPFIKSLGTEDNTTYSH-HMKDARFTIPTPALLTKVVDLIAAVPMD----DK 140

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +IYE+++ +  S        F TPR ++ +   L+          SP    T+ DP
Sbjct: 141 DTKGDIYEYMLGKIASAGRN--GQFRTPRHIIKMIVELM----------SPKPTDTICDP 188

Query: 213 TCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            CGT GFL  A  ++ D  S          K        G + +     +    M++  +
Sbjct: 189 ACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGV 248

Query: 265 ESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           E       +  I+   +LS+       ++   L+NPPF    + +  A           +
Sbjct: 249 E-------NPRIENRDSLSEVHSHIESKYSLILANPPFAGSLDNESCA-----------K 290

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L+     GGRAA+++    LF   + +    +R+ ++E
Sbjct: 291 NIQAVIKTKKTELLFLALFLRLLKT----GGRAAVIVPDGVLF--GSSTAHKALRQKIVE 344

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +EAI+++P+ +F     ++T + I +        G    +   D+     +   KR 
Sbjct: 345 EQKLEAIISMPSGVFKPYAGVSTAIMIFTK----TMSGGTDKVWFYDMQADGYSLDDKRN 400

Query: 443 IIN-----DDQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++     ++    I+  + +      R+  + S ++D          +        + +
Sbjct: 401 ELDSSKHENNNIPDIIARFHNLASESGRKATEQSFLVDKIDIAANGYDLSINRYKEVVYE 460

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +         +   +L        ++ LK M++
Sbjct: 461 QVEYEAPSKILADLELLEQDILKGMNELKEMLK 493


>gi|220932854|ref|YP_002509762.1| N-6 DNA methylase [Halothermothrix orenii H 168]
 gi|219994164|gb|ACL70767.1| N-6 DNA methylase [Halothermothrix orenii H 168]
          Length = 484

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/501 (16%), Positives = 176/501 (35%), Gaps = 65/501 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +          +E+       + DL+       Y + N +    +   S++  
Sbjct: 33  MLFLKIFD---------TKEQEEWAFEDDYDLKGPFVPEKYQWGNWAGVRKADRMSSDEL 83

Query: 98  NNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 +     N         + I     F  +   ++   LL+++    + I+   D 
Sbjct: 84  IEFVEELFKELKNLSVDEHTDRRKILVRDVFEDSNNYMKSGVLLWQVIDKINEIDFG-DY 142

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                 ++IYE +++   S  +  A ++ TPR V       L          +P +   +
Sbjct: 143 KERHAFNDIYETILKDLQSAGN--AGEYYTPRAVTDFVIDRL----------NPQIGEKV 190

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLE 265
            D  CGTGGFL  A+ H+     +             HG E +P  H +C   M++  ++
Sbjct: 191 ADFACGTGGFLISALEHMKASKENLTTEESETIKNSLHGIEKKPMPHLLCCTNMILHDID 250

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  +       T  +D    K++     NPPFG     +++ ++            
Sbjct: 251 FPDILHQNSLA----TNVRDYPEEKKYDVIAMNPPFGG---TEEEGIKMNF--------- 294

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   + S+ + LF+  + ++++     GGR  IVL    LF     + +  I++ LL   
Sbjct: 295 PAEYRTSETADLFMTLILHRIK----KGGRVGIVLPDGFLFGND--NAKIVIKKKLLNEF 348

Query: 386 LIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  IV LP  +F   T+I T L       T       + +   +        +  K + 
Sbjct: 349 NLHTIVRLPNGVFAPYTDINTNLLFFDYNGTG-----TEEVWYYEHQLPEGYKKYTKTKP 403

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEAD 501
           I  ++ +   + +  RE  +F+  +       R   +    R      LD   +   + +
Sbjct: 404 IRMEEFKAEQEWWDKREENEFAWKVSKEEIIERDYNLDFKNRNVEEEDLDHPEVILKKYN 463

Query: 502 ITWRKLSPLHQSFWLDILKPM 522
              +++  + +    ++ K +
Sbjct: 464 EAVKEVEEIQEKIIAELRKLL 484


>gi|302553244|ref|ZP_07305586.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302470862|gb|EFL33955.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 374

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 134/382 (35%), Gaps = 49/382 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++      +           P    T+ DP CGTGGFL  A  ++     +   P
Sbjct: 20  FTPRPLIQAIIDCV----------RPTADDTITDPACGTGGFLLAAAEYILHEYGNQLTP 69

Query: 238 PILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G EL   T  +    + +  +       L   ++    L+      KR
Sbjct: 70  EQRQDLSSGGIWGTELVRNTARLAAMNLFLHGIGQPTGPAL---VRTKDALAAP--PDKR 124

Query: 292 FHYCLSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               L+NPPFGKK       D  +  +E    E   F       ++  + F+ H+A+ LE
Sbjct: 125 ASLVLANPPFGKKSSITVYGDDGSAAREAIAYERRDF---WVTTTNKQLNFVQHIASLLE 181

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           +     GRAA+V+  + LF G AG     IRR LL+   +  ++ LPT +F+   +   +
Sbjct: 182 I----HGRAAVVVPDNVLFEGGAGE---TIRRRLLKEYDVHTLLRLPTGIFYAGGVKANV 234

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                ++    R   + +   D  T+      K+  +        +  Y  R +   S+ 
Sbjct: 235 LFFERKQARPERPWTEKLWVYDFRTAQH-FTLKQNPLTRAALEDFVQCY--RPDEDRSKR 291

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           ++   F     +           +     +   DITW +   L  +  L   + +  +I 
Sbjct: 292 VETERFKAYTYE-----------ELIARDKANLDITWLRDPSLDDADNLPAPEVLAAEIV 340

Query: 528 PYGWAESFVKESIKSNEAKTLK 549
               A      +I     +   
Sbjct: 341 EDLQAALEEFAAIAETLQQARG 362


>gi|296273009|ref|YP_003655640.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299]
 gi|296097183|gb|ADG93133.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299]
          Length = 483

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 155/424 (36%), Gaps = 60/424 (14%)

Query: 39  TLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
             LR L+  LE  ++ +     E+Y           S+         +  +         
Sbjct: 33  MFLRYLDE-LENEKADIAVLKDEEYTYILDEEFRWNSWAMPKVDGKIDHHKARNGIDLVQ 91

Query: 95  NTRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                L  Y+A F   A+          +  FS    +++    L +I      +     
Sbjct: 92  FVDGKLFPYLAKFKQTAEHAQTIEYKIGEI-FSELKNKIQSGYNLREILAYADELPFR-S 149

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     +S++YE  I+  G+        + TPR ++     ++           P +   
Sbjct: 150 SKDKHELSHLYETKIKNMGN-AGRNGGQYYTPRPLIRAMIDVI----------DPQIGEK 198

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH----KIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +YD   G+ GFL +A +++ +  + +    KI      +G+E +   + + +  M++  +
Sbjct: 199 VYDGAVGSAGFLCEAYDYMYERMNKNVDNLKILQERTFYGKEKKNLAYVIGIMNMILHGI 258

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E+   +  +   +    L +D+    R+H  L+NPPFG K  K+                
Sbjct: 259 EAPNIKHTNTLGE----LIRDIQEKDRYHVILANPPFGGKERKEVQQNFD---------- 304

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K  + + LFL H    L+     GGRAAIV+ ++ L N    S    +R+ LLE+
Sbjct: 305 ----IKTGETAFLFLQHFIKSLKA----GGRAAIVIKNTILSNSDNASI--ALRKHLLES 354

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  I+ +P   F    + T +   +  +  ++      I    L  +      K   +
Sbjct: 355 CNLHTILDMPAGTFTGAGVKTVVLFFTKGEATKK------IWYYSL--NPGRNMGKTNPL 406

Query: 445 NDDQ 448
           ND  
Sbjct: 407 NDKD 410


>gi|326778616|ref|ZP_08237881.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658949|gb|EGE43795.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 867

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 144/424 (33%), Gaps = 60/424 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGS 93
           I     ++RL+         +R+   A   +  D +  F +      +   +     +  
Sbjct: 32  ITYLLFIKRLDEI------QIRKDNRASRTAKPDPDPLFAEDQQELRWQNFKACDPEVMY 85

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                 +  Y+ +   +                +    LL K+ +    I +        
Sbjct: 86  RIVEQGVFPYLRAMGGDGSTYSHH--MRDARFTIPGPNLLAKVVELLDSIAME----SSD 139

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              +IYE+L+ +  +        F TPR ++ L   +            P     + DP 
Sbjct: 140 TAGDIYEYLLAKIATSGRN--GQFRTPRHLIRLMVEMT----------QPKPDDEVCDPA 187

Query: 214 CGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           CGT GFL  + ++V    +               + HG + +     +    ML+  +E+
Sbjct: 188 CGTAGFLVQSASYVKREHAKALLDVEQQAHFNASMFHGFDFDSTMLRIGSMNMLLHGIEN 247

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              R       + S +       +R+   L+NPPF    + +  A +             
Sbjct: 248 PDIR------YRDSLVESSAGEAERYSLILANPPFAGSLDYESTAADLLP---------- 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LFL      L+     GGRAA+++    LF   +     E+RR L+E+  
Sbjct: 292 -VVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSTKAHKELRRTLVEDHK 344

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++ +V LP+ +F     ++T + +     T    G    +   D+     +   +R  + 
Sbjct: 345 LDGVVKLPSGVFKPYAGVSTAILLF----TRTDSGGTDNVWFYDVQADGFSLDDRRNPLL 400

Query: 446 DDQR 449
            + R
Sbjct: 401 PEDR 404


>gi|116629553|ref|YP_814725.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri ATCC 33323]
 gi|238854088|ref|ZP_04644437.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri 202-4]
 gi|311110804|ref|ZP_07712201.1| type I restriction-modification system, M subunit [Lactobacillus
           gasseri MV-22]
 gi|116095135|gb|ABJ60287.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri ATCC 33323]
 gi|238833295|gb|EEQ25583.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri 202-4]
 gi|311065958|gb|EFQ46298.1| type I restriction-modification system, M subunit [Lactobacillus
           gasseri MV-22]
          Length = 504

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 171/513 (33%), Gaps = 62/513 (12%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS- 93
           I     ++ L+ +    R      +L         +  V++      +  E   ST    
Sbjct: 32  ITYLMFIKDLDDS--DNRRRKDNAFLGLNDYKSIFDGEVQIDDDVVVDGDELRWSTFKDF 89

Query: 94  ------TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELH 146
                 T  +  +  +I +  +   + F           +   GLL K+ ++   I  L 
Sbjct: 90  APEKMFTVVQTEVFPFIKNLKNGEDSSFAR-HMKDATFLIPTPGLLSKVVESLDEIYRLM 148

Query: 147 PDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              V     +  ++YE+L+ +  +        F TPR ++ +   L+          +P 
Sbjct: 149 DADVSKRADIRGDVYEYLLGKLSTAGRN--GQFRTPRHIIKMMVELM----------NPQ 196

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVA--------DCGSHHKIPPILVPHGQELEPETHAVCV 256
              ++ DP  GT GFL +A  ++         D           +  G + +P    +  
Sbjct: 197 ANDSICDPAAGTAGFLVEAAEYLQTKKSAEIYDSKESKDYFHNQLFTGYDTDPTMLRIGA 256

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             ML   ++       +  I+   +LS       ++   ++NPPF  K   D D+V  + 
Sbjct: 257 MNMLTHGVD-------NPKIEYQDSLSDQNNDRDKYSLIMANPPF--KGSLDYDSVSDDL 307

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                        K     +LF              GGR A ++    LF   +      
Sbjct: 308 LK---------TCKTKKTELLF----LTLFLKMLRVGGRCACIVPDGVLF--GSSKAHKS 352

Query: 377 IRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN--ATDLWTS 433
           IR+ L+E++ +EA++++P+ +F     ++T + I +         KV   +  A      
Sbjct: 353 IRKVLVEDNNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADGFSLD 411

Query: 434 IRNEGKKRRIINDDQRR-QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            +    K   I D   R + LD  + R+  + S M+  +        +            
Sbjct: 412 DKRTPVKENDIPDIIERFKHLDKEIDRKKTEKSFMVGKKDIVANDYDLSINRYKEIEYKP 471

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                 +  I   +      +  L  LK +++ 
Sbjct: 472 VEYPPTKDIIAEIEKLDKEANDALQELKALLKD 504


>gi|114798203|ref|YP_761235.1| type I restriction-modification system, M subunit [Hyphomonas
           neptunium ATCC 15444]
 gi|114738377|gb|ABI76502.1| type I restriction-modification system, M subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 513

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 140/423 (33%), Gaps = 61/423 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     ++RL+         + E   A  G  ++   F         + S+   S   + 
Sbjct: 32  ITYLLFIKRLDDL-----HTLEENKAANLGIKMERRIFPDGKDDQGRDWSDLRWSRFKNF 86

Query: 95  NTRNNLESYIASFSDNAKAIFED-----FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
             R  ++          + + E+                 A LL K       I +    
Sbjct: 87  EARAMMDVVAERVFPFLRQMGEEGSSYGEHMRDARLGFSNAALLAKAVDLLDKIPMD--- 143

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  S        F TPR ++ L   +            P     +
Sbjct: 144 -DRDTKGDLYEYMLGKIASAG--QNGQFRTPRHIIQLMVEMT----------QPTPQDVI 190

Query: 210 YDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV---PHGQELEPETHAVCVAGMLIR 262
            DP  GT GFL  A  ++ +  +    H K          HG + +P    +    M++ 
Sbjct: 191 CDPAAGTCGFLVAAGEYLREKHASLFRHEKQRTHFHNGMFHGFDFDPTMLRIGSMNMVLH 250

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E+          Q+            R+   L+NPPF    + D  A + +       
Sbjct: 251 GVENPDVSYRDSLAQEHDA------DAGRYSLILANPPFAGSLDYDTTAKDLQQ------ 298

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                + K     +LFL      L+     GGRAA+++    LF   + +    +R  L+
Sbjct: 299 -----IVKTKKTELLFLALFLRLLKT----GGRAAVIVPDGVLF--GSSTAHKTLREMLV 347

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E   +EA++ LP+ +F     ++T +   +        G    +   DL    ++   KR
Sbjct: 348 EKHKLEAVLKLPSGVFRPYAGVSTAILFFTK----TGVGGTDHVWFYDLQADGQSLDDKR 403

Query: 442 RII 444
             +
Sbjct: 404 TEL 406


>gi|325287952|ref|YP_004263742.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489]
 gi|324323406|gb|ADY30871.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489]
          Length = 499

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 161/474 (33%), Gaps = 74/474 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S+ N I +  + L  D   +        I     L+ L    +        +   +    
Sbjct: 2   SIQNNIDRITDILRRDDGISGAMHYTEQISWILFLKFLNDYEDNKADEAFLEGTDYNYVL 61

Query: 67  IDLESFVK----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN----------AK 112
                + +           +    +          N L  Y+ +F               
Sbjct: 62  RKDLRWHQWACPKDENGKLDVKRANSGDDLIEYVNNTLFPYLKAFKSTTNDPKTLTYKIG 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           AIFE  D      R+     L ++      ++          +S +YE+L++  GS+   
Sbjct: 122 AIFEYLD-----NRIASGHTLREVLDIIDALDFQSSD-ELFELSQVYENLLKSMGSDGGN 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR ++                    +  T+YD   G+GGFL +A + +     
Sbjct: 176 S-GEFYTPRAIIKAMVE----------TTDIKVGDTIYDGAVGSGGFLVEAFDFLTAGDK 224

Query: 233 HHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             K+              GQE     + + +  M++  +ES      +   Q      +D
Sbjct: 225 KEKLSAKDWETIQNDTFFGQEKTSLGYVMGMMNMILHGIESPNVYKGNTLTQN----IRD 280

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                R    L+NPPFG K +K          N                 +LF+ H    
Sbjct: 281 YQEKDRHDVILANPPFGGKEKKQIQQNFPVESNA--------------TEILFMQHFMKM 326

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+L     GRAAIV+    LF  +  +  +++++ LLEN  +  IV+LP+ +F   + + 
Sbjct: 327 LKLE----GRAAIVVPEGVLF--QTNNAFTKVKQTLLENFNVHTIVSLPSGVFLPYSGVK 380

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           T +         +R+G    I   D   +   +  K + I  +  ++ + ++ +
Sbjct: 381 TNIIYF------DRKGATSDIWYYD--VTPPYKLTKNKPIAYEHIKEFVHLFHN 426


>gi|260906089|ref|ZP_05914411.1| N-6 DNA methylase [Brevibacterium linens BL2]
          Length = 490

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 154/435 (35%), Gaps = 60/435 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     +RRL+           E   +F G  ++  +F        ++        +   
Sbjct: 36  ITYLLFIRRLDEL-----ETQAESRASFTGKAVENPTFGPREQDFRWSRLRNLEPEVMYD 90

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
              + +  ++     +     E          +  A LL K+    S I +         
Sbjct: 91  VVSDGVFPFLRKLGGDGSTYGEH--MRDARFTVPSAHLLSKVVDLLSDIPMD----KRDT 144

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  S  +     F TPR ++ L   +           +P     + DP C
Sbjct: 145 NGDLYEYLLSQISSSGTN--GQFRTPRHIIDLMVKM----------SAPRPDDEICDPAC 192

Query: 215 GTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  A   + +                  + HG + +     +    ML+  +E  
Sbjct: 193 GTAGFLVAASEQLRESHPEVFTNKEQRHFFHNSMFHGYDFDSTMLRIGSMNMLLHGIE-- 250

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I+   +LS+++    +++   L+NPPF          ++ E  + +L R   
Sbjct: 251 -----QPDIRYRDSLSENVSAEAEKYTLILANPPFAGS-------LDYEATSQDLQR--- 295

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF              GGRAA+++    LF   +     E+RR L+E   
Sbjct: 296 -VVKTKKTELLF----LALFLKLLKPGGRAAVIVPDGVLF--GSSKAHKELRRMLVEEQK 348

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++ +V LP+ +F     ++T +   +        G  + +   D+     +   KR  I 
Sbjct: 349 LDGVVKLPSGVFKPYAGVSTAILFFTK----TNSGGTENVWFYDVRADGFSLDDKRNPIE 404

Query: 446 DDQRRQILDIYVSRE 460
            +   Q+L+ +  R+
Sbjct: 405 ANDLPQVLERWTERD 419


>gi|165976839|ref|YP_001652432.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876940|gb|ABY69988.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 489

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 163/454 (35%), Gaps = 58/454 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS----EYSLSTLGST 94
             L+ +  A E     + + Y +     +  +++ K        T      +  + L   
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNKDGKAMTGDELLNFVNNELFPA 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I           
Sbjct: 93  LKNLPISAETPMNQKIIRAAFEDNN-----NYMKNGILLRQVINIIDEINF-EQYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V      ++           P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMAKMI----------KPRLGEKIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +           +L    +G E +   H +C+  +L+  +++      
Sbjct: 195 GTGGFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHD 254

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      KD     +F   L NPP+G              +  ++    P   + S
Sbjct: 255 NALEK----PVKDYTENDKFDVILMNPPYGGS------------EIEQIKTNFPSALRSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLK----KNGRVAIVLPDGFLFGTD--NAKMAIKQKLMSEMNLHTVIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L +    + +       +     +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL-DMPQGYKNFSKTKPMKL----EHFNE 407

Query: 452 ILDIYVSR---ENGKF--SRMLDYRTFGYRRIKV 480
           +++ + +R   E   F  +R   Y+    R+  +
Sbjct: 408 VMEWWYNRQAIEIDGFDKARCYSYQEIADRQFNI 441


>gi|307268426|ref|ZP_07549804.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|306515233|gb|EFM83770.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 284

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 113/302 (37%), Gaps = 47/302 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----------------- 51
           A L   ++  A++L      +++   +L     + L   L  T                 
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 52  RSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           ++ + ++ L    S  DL         +     Y F + +E +   +   +       Y+
Sbjct: 63  QTELYKELLKDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 105 ASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +S       +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVTAH--EGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAE-----DMNLRNGDT 282

Query: 282 LS 283
             
Sbjct: 283 AQ 284


>gi|294675505|ref|YP_003576121.1| type I restriction-modification system subunit M [Prevotella
           ruminicola 23]
 gi|294472887|gb|ADE82276.1| type I restriction-modification system, M subunit [Prevotella
           ruminicola 23]
          Length = 509

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 162/485 (33%), Gaps = 82/485 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS--------EYSLS 89
              ++ L+          R +         +LE  +   G  + N          E   S
Sbjct: 45  LFFIKLLDDK-------QRREESNAIEFGYELEDPLFKKGQKWTNPETNQEVPYEELRWS 97

Query: 90  TLGS-------TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
              S        + RNN+  +I      + + +  +     +  + KA +L  +  +   
Sbjct: 98  VFKSFSAQNMLHHVRNNVFVFIKGIGKESGSAYSRY-MQDAVFSIPKADVLQSVVDDIDL 156

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +++         M ++YE+++ R   +       F TPR ++ +   +            
Sbjct: 157 LDME----DADTMGDVYEYMLARMSEKG--QNGQFRTPRHIIRMIITMA----------E 200

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAV 254
           P +   + DP  G+ GF+ +A   + D             K     + +G + +     +
Sbjct: 201 PKIDDVICDPAMGSAGFIMEAAKQIYDQNRAVIQSNEDVRKRYYSTMFNGFDTDQTMLRI 260

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               ML+  +        S NI+   +LS+D     R+  C++NPPF  K  K       
Sbjct: 261 GAMNMLLHGI-------PSPNIKYQDSLSEDNTDQSRYTLCVANPPFSGKVLK------- 306

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
               G + +    +   +   +LF+      L++    GGR   V+    LF        
Sbjct: 307 ----GTISKSLLSIANTNATELLFVALFVRSLKV----GGRCFSVVPDGVLFGND--KAH 356

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             IR+ L++   + A++++P  +F   + ++T + + +        G    +   ++   
Sbjct: 357 MAIRKELVDKQCLRAVISMPAGVFQPYSGVSTAILVFTKTDA----GGTDKVWFYEMRGD 412

Query: 434 IRNEGKKRRIINDDQR------RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
                 KR   +DD         Q LD    R     S ++           +       
Sbjct: 413 GFTLNAKRTPCSDDDIPDLLQRWQHLDAETDRTRKDQSFLVPVDEIRQNDYDLTFNKYKE 472

Query: 488 FILDK 492
            + +K
Sbjct: 473 VVREK 477


>gi|282866391|ref|ZP_06275436.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282558787|gb|EFB64344.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 472

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 145/418 (34%), Gaps = 57/418 (13%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             +RRL+  +       R         N       +V  +S +             +   
Sbjct: 1   MFIRRLD--ILEQAKENRANRTGRLAENPIYSDDTQVLRWSVFINESPENMLTRVRDGVF 58

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                +           +D  F+     +E + LL K     +GI++           ++
Sbjct: 59  PWLRALGGEGSTYAHHMKDARFT-----IETSNLLTKAVDMINGIDMG----DKDTKGDL 109

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+++ +  +        F TPR ++ L   ++          +P     + DP CGT G
Sbjct: 110 YEYMLSKIATAG--QNGQFRTPRHIIQLMVEMM----------APQPGDEICDPACGTAG 157

Query: 219 FLTDAMNHVADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           FL  A  +V          P         + HG + +     +    ML+  +E+   R 
Sbjct: 158 FLVAAAEYVEQTHREEMFEPAQRQHFNESMFHGFDFDSTMLRIGSMNMLLHSVENPDIR- 216

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                 + S          R+   L+NPPF    + D  A + +            + K 
Sbjct: 217 -----YRDSLAQNVAGEADRYSLILANPPFAGSLDHDATAADLQK-----------VVKT 260

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               +LFL      L+     GGRAA+++    LF+  + +   ++R+ L+E   ++A++
Sbjct: 261 KQTELLFLALFLRLLKP----GGRAAVIVPGGVLFDSSSNA-YKDMRKLLVEGHKLDAVI 315

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +LP  +F     ++T + + +        G    +   ++     +   KR  + D+ 
Sbjct: 316 SLPGGVFKPYAGVSTAILVFTK----TNSGGTDNVWFYEVTADGWSLDNKRSPLLDED 369


>gi|293609931|ref|ZP_06692233.1| type I restriction enzyme [Acinetobacter sp. SH024]
 gi|292828383|gb|EFF86746.1| type I restriction enzyme [Acinetobacter sp. SH024]
          Length = 498

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/545 (16%), Positives = 179/545 (32%), Gaps = 79/545 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           TG   S  + IW       G     +  + +     +RRL+          +EK      
Sbjct: 8   TGEIKSKIDQIWNAFWS-GGISNPLEVMEQMTYLLFIRRLDEI-----QITKEKKANRLK 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-----RNNLESYIASFSDNAKAIFEDFD 119
             ++   F     +  ++       TLG   T      N +  +I +     +  +    
Sbjct: 62  KPVEHPIFTPEQDHLRWSK----FITLGDAATLYSTVANEVFPFIKNLGAEDETTYSH-H 116

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  +    LL K+    + + +           +IYE+++ +  S        F T
Sbjct: 117 MKDARFTIPTPALLTKVVDLVADVPMD----DKDTKGDIYEYMLGKIASAG--QNGQFRT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +   L+           P    T+ DP CGT GFL  A  ++ D  S       
Sbjct: 171 PRHIIKMIVELM----------QPKPTDTICDPACGTAGFLVAASEYLNDHYSTEIFANP 220

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K        G + +     +    M++  +E+       +   + S          +
Sbjct: 221 EAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVEN------PRIENRDSLSETHSHIESK 274

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  A           +    + K     +LFL      L+    
Sbjct: 275 YSLILANPPFAGSLDNESCA-----------KNIQAVVKTKKTELLFLALFLRLLKT--- 320

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGRAA+++    LF   + +    +R+ ++E   +EAI+++P+ +F     ++T + I 
Sbjct: 321 -GGRAAVIVPDGVLF--GSSTAHKALRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIF 377

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN---------DDQRRQI--LDIYVSR 459
           +        G    +   D+     +   KR  ++          D   +   LD    R
Sbjct: 378 TK----TMSGGTDKVWFYDMQADGYSLDDKRNELDASKHENNNIPDIIARFKNLDGEKDR 433

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +  + S M+D          +        + ++         +   ++        +  L
Sbjct: 434 KATEQSFMVDKADIAANGYDLSINRYKEVVYEQVEYEAPSKILADLEVLEQDILKGMATL 493

Query: 520 KPMMQ 524
           K M++
Sbjct: 494 KEMLK 498


>gi|323340689|ref|ZP_08080941.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091812|gb|EFZ34432.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 150/453 (33%), Gaps = 72/453 (15%)

Query: 40  LLRRLECAL--------EPTRSAVREKYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLST 90
            ++R+   +        +  R       L     +  + E       Y      E   S 
Sbjct: 7   FVKRIRDIMRNDAGINGDAQRIEQIAWMLFLKVYDAKEQEWEFDDDDYMSIIPEECRWSN 66

Query: 91  LGSTN--------------TRNNLESYIASFSDNAKAIFEDF----DFSSTIARLEKAGL 132
               +                N L   + +   +AK   +       F+     ++   L
Sbjct: 67  WAHDDKSGTAMTGDTLLNFVNNTLFPTLKTLPVDAKTPIKKAIVQTTFADANNYMKDGVL 126

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L+++      ++L  D         IYE +++   S     + +F TPR V      ++ 
Sbjct: 127 LHQVINVIDELDLS-DYEESHAFGEIYETILKELQSAG--SSGEFYTPRAVTDFMAQMI- 182

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPE 250
                     P +   + D  CGTGGF+T  +  + +   +           +G E +  
Sbjct: 183 ---------RPQIGEKMADFACGTGGFITSWLKELHNQTKNVDDEEAYASSIYGIEKKQF 233

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            + +C+  ML+  L+       +  ++       D     +F+  L NPP+G   + D  
Sbjct: 234 PYMLCITNMLLHDLDVPQVYHGNSLLR----DVLDYTEDDQFNVILMNPPYGGSEKADVK 289

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                          P     S+ + LF+  +  +L+      GRAA++L    LF    
Sbjct: 290 ------------NHFPADLASSETADLFMSVIMYRLKQ----DGRAAVILPDGFLFGTD- 332

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATD 429
            + +  I++ LL    +  I+ +P+ +F   T+I T +         E       I    
Sbjct: 333 -NAKISIKKKLLSEFNLHTIIRMPSSVFSPYTSITTNILFFDRTHPTEE------IWFYR 385

Query: 430 L-WTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +          K + +  +    +++ + +R+ 
Sbjct: 386 MDMPEGYKHFSKTKPMKLEHFAPVIEWWNNRQE 418


>gi|261404907|ref|YP_003241148.1| N-6 DNA methylase [Paenibacillus sp. Y412MC10]
 gi|261281370|gb|ACX63341.1| N-6 DNA methylase [Paenibacillus sp. Y412MC10]
          Length = 489

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/488 (15%), Positives = 165/488 (33%), Gaps = 63/488 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96
              +R L+      +    E   A  G  +     +   G S   +   +       N  
Sbjct: 35  LMFIRSLDE-----KDLESEMTEALTGETMPKVFPLDEEGQSMRWSKFKNKDPREIFNIV 89

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
              +  YI + +   +  F  +     +  +    +L KI      +  H D     +  
Sbjct: 90  GTKVFPYIKNLNGTNETAFSRY-MQDAMFLIPTPQVLQKIITGLDELYEH-DIKDLDMQG 147

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +        F TP+ +  +   LL          +P     + DP CGT
Sbjct: 148 DLYEYMLGKLATSG--QNGQFRTPKHIRDMMVRLL----------APTPDDKICDPACGT 195

Query: 217 GGFLTDAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            GFL  +  ++ +           +     +  G + +     +    +++  +      
Sbjct: 196 AGFLISSAEYIREKYEAEMTSEQWEHFAGEMFSGFDTDRTMLRLSAMNLMLHSIN----- 250

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               NI    ++SK   T   +   L+NPPF      D +++    K          +  
Sbjct: 251 --QPNIDYVDSVSKQNETASEYDIVLANPPFTG--TVDAESIHDNLKT---------ICN 297

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LF+      L+     GGR A ++    LF          +R+ L+EN  ++A+
Sbjct: 298 TKKTELLFVALFLRILQ----KGGRCACIVPDGVLF--GTTKAHKSLRKELVENHQLQAV 351

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +        G    +   D+     +   KR  I  +  
Sbjct: 352 ISMPSGVFKPYAGVSTAILIFTKTDA----GGTDKVWFYDMQADGYSLDDKRSPIEANDI 407

Query: 450 RQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             IL+ + +      R+  + S +++      +   +        + +K        D+ 
Sbjct: 408 PDILNRFHNIDAEADRKPTEQSFLVEKSVIVAKDYDLSINRYKEVVYEKVEYDAP--DVI 465

Query: 504 WRKLSPLH 511
             +L  L+
Sbjct: 466 MNRLDELN 473


>gi|218690008|ref|YP_002398220.1| putative HsdM; type I restriction modification enzyme methylase
           subunit [Escherichia coli ED1a]
 gi|330000674|ref|ZP_08303787.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3]
 gi|218427572|emb|CAR08468.2| putative HsdM; type I restriction modification enzyme methylase
           subunit [Escherichia coli ED1a]
 gi|328537910|gb|EGF64096.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3]
          Length = 557

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/561 (16%), Positives = 184/561 (32%), Gaps = 107/561 (19%)

Query: 35  ILPFTLLRRLECALEPTRSAVR---EKYLAF--GGSNIDLESFVKVAGYSFYNTSEYSLS 89
           I     ++RL+      +       EKY++   G      E    VA     +      S
Sbjct: 34  ITYLLFMKRLDELDHKRQDEGETSGEKYISKFAGTWIPPEERNRPVAEQHPIDKRTLRWS 93

Query: 90  ---TLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIE 144
               L       ++   +  F  +      +F     + +  + K+ LL +  K    I 
Sbjct: 94  EFKKLQPEEMLQHVRDKVFPFLKDLNGAESNFTHHMKNAVFIIPKSALLVEAVKAIDEIF 153

Query: 145 --LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             +  D+         +  ++YE L+    +        F TPR ++ L   L+      
Sbjct: 154 EMMKRDSQEKGQAFQDIQGDVYEFLLSEIATAG--KNGQFRTPRHIIKLMADLV------ 205

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------------------ 227
                P + + + DP CGTGGFL  A  ++                              
Sbjct: 206 ----QPQLGQRIADPACGTGGFLLGAYQYILTQLSLSQNLKRDNSKGSTHDEDGFFRTSV 261

Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            A      +I      +G +++     + +  +++  ++         +I    TLSK  
Sbjct: 262 TAALTKKARILLQESLYGYDIDATMVRLGLMNLMMHGID-------EPHIDYQDTLSKSY 314

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               ++   L+NPPF      D+  + +  K              +   +LF+ ++   L
Sbjct: 315 SEETKYDIVLANPPFTGSI--DRGDINENLKLS-----------TTKTELLFVENIYRLL 361

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIAT 405
           +     GG A +++    LF   +G    E+R+ L+E   ++A++ LP+ +F     ++T
Sbjct: 362 K----KGGTACVIVPQGVLF--GSGKAFKELRQTLVERCDLKAVITLPSGVFKPYAGVST 415

Query: 406 YLWILSNR-KTEERRGK--VQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSREN 461
            + + S      ++  K     +   ++ +   +   KR  +      + I+  Y SR+ 
Sbjct: 416 AILLFSKVFGPGDKISKPATDYVWFYEMSSDGYSLDDKRNKLEGYGDLQDIIQKYHSRDE 475

Query: 462 ----GKFSRML------------DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
                + ++              D     Y+                  L + E     +
Sbjct: 476 ASDTDRTAKCFMVPRIDIEAENYDLSLSRYKEEIFEEVQYEQPEAILERLIQAEVGNVDK 535

Query: 506 KLSPLHQSFWLDILKPMMQQI 526
           K+    QS  L  L  +   I
Sbjct: 536 KVLNKVQSGILYELLELKGMI 556


>gi|331002084|ref|ZP_08325603.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411178|gb|EGG90594.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 651

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 128/350 (36%), Gaps = 44/350 (12%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +     A           +  + QE    T+ +    +++R +        + 
Sbjct: 14  GSGSLLINIGKTAAKYLDDA---NRIQYYAQEYNLNTYNLTRMNLVMRGI-----LPANI 65

Query: 275 NIQQGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             + G TL +D            +        +SNPP+ ++W+      +  +       
Sbjct: 66  FTRNGDTLKEDWPYFDESDPHSTYEPLYVDAVVSNPPYSQRWDPTGKDSDPRYV------ 119

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G+   S     FL+H    L+      G   IVL    LF    G  E  IR+ L+E
Sbjct: 120 -RYGIAPKSKADYAFLLHDLYHLQP----NGIMTIVLPHGVLFR---GGEEGNIRKNLIE 171

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            + I+AI+ LP ++FF T I T + +L  ++       + +I+A+  +     +  K   
Sbjct: 172 QNNIDAIIGLPANIFFGTGIPTIVMVLRQKRENT---DILIIDASKGF----KKDGKNNK 224

Query: 444 INDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEA 500
           +     R+I+D    R+N  K+S+++  +        + + R +  S   +   +     
Sbjct: 225 LRACDIRKIVDTIKERKNVEKYSKVVSLKDIRKNDYNLNIPRYVDSSEETESYDIYASMF 284

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
                      +S+W  +   +  +++      S   E+IK        V
Sbjct: 285 GGIPENELERFESYW-KVFPSLKGELFTGEEYLSLKSENIKETIKNNNDV 333


>gi|295092360|emb|CBK78467.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 493

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 160/476 (33%), Gaps = 63/476 (13%)

Query: 60  LAFGGSNIDLESFV----KVAGYSFYNTSEYSLSTLGST----NTRNNLESYIASF---- 107
                   D E +V    +   +  +   +++ + L          N L   +       
Sbjct: 42  AKEQDWEWDDEEYVSIIPEECRWRNWAVDDHTGTALTGDKLLNFVNNTLFPTLKKLPVDV 101

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           S   K       F+     ++   LL ++     G++   D         IYE +++   
Sbjct: 102 STPIKKAIVQTTFADANQYMKDGVLLRQVINVIDGLDFG-DYEESHAFGEIYETILKELQ 160

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S     + +F TPR V      ++          +P +   + D  CGTGGFLT  +  +
Sbjct: 161 SAG--SSGEFYTPRAVTDFMAKMI----------NPQIGEQVADFACGTGGFLTSWLKEL 208

Query: 228 ADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                 +  +       +G E +   + +C+  ML+  ++       +  ++       D
Sbjct: 209 ETKIETTEDQAAYDRSIYGIEKKQFPYMLCITNMLLHGIDVPKIYHDNSLLK----DVLD 264

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F   L NPP+G             ++  E+    P     S+ + LF+  +  +
Sbjct: 265 YTMDDQFDVILMNPPYGG------------NEKTEVKNHFPADLASSETADLFMSVIMYR 312

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+      GRAA++L    LF     + +  I++ L     +  ++ +P  +F   T+I 
Sbjct: 313 LK----KNGRAAVILPDGFLFGTD--NAKVAIKKKLFSEFNLHTVIRMPHSVFAPYTSIT 366

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-- 462
           T +    + K  E     +L +  + + +      K + +        +D + +RE    
Sbjct: 367 TNILFFDHTKPTEETWFYRL-DMPEGYKNF----SKTKPMELKHFAPAMDWWNNREEITV 421

Query: 463 ---KFSRMLDYRTFGYRRIKVL---RPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                ++         R   +     P     IL    L +   +      + + +
Sbjct: 422 DGFDKAKKFTAEEIAARNYNIDLCGYPHEEEEILPPKELIQQYQEKRASLNADIDR 477


>gi|83648373|ref|YP_436808.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83636416|gb|ABC32383.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 250

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 29/254 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
                S    +W  A+ L G  + +++  V+L    L+ +    E  R  + E+     G
Sbjct: 11  NKKQRSFEQTLWDTADKLRGSVESSEYKHVVLSLIFLKFISDKFEERRKELIEEG---HG 67

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFED 117
             +D+  F       FY   E     +     ++++          +   + + +    D
Sbjct: 68  GYVDMVDFY-TMKNVFYLPEESRWEFISKNAKQDDIAVKIDTALHTVEKNNKSLRGALPD 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     + K   L     N   +E +       V+  +YE+ + +F +   +G  +F
Sbjct: 127 NYFSRLGLDVSKLAALIDSINNIDTVEDN----ETDVVGRVYEYFLGKFAATEGKGGGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ VV L   ++                 +YDP CG+GG    ++  V +   H    
Sbjct: 183 YTPKCVVKLIAEMIEPY-----------HGKIYDPCCGSGGMFVQSVKFVEN---HRGNK 228

Query: 238 PILVPHGQELEPET 251
             +  +GQE    T
Sbjct: 229 KDISIYGQEQTSTT 242


>gi|254503222|ref|ZP_05115373.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222439293|gb|EEE45972.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 511

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 142/430 (33%), Gaps = 67/430 (15%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     +R L+         + E+        ++   F           S+   S     
Sbjct: 32  ITYLLFMRGLDDI-----QTLEERKATRFDKPVERVIFPDGNDPRDRPYSDLRWSRFKDK 86

Query: 95  NTRNNL-------ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                          ++   + N  A  E          +    LL K+    S I +  
Sbjct: 87  APAEMFEIVSEHVFPFLRELAGNDTAHAEH--MKGARFTIPTPALLAKVVDLLSEIPME- 143

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    ++YE+++ +  S        F TPR ++ L   L            P    
Sbjct: 144 ---DRDTKGDLYEYMLAKIASAG--QNGQFRTPRHIIQLMVELT----------RPTPKD 188

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGML 260
           T+ DP  GT GFL  A  ++ +            K     + HG + +     +    M 
Sbjct: 189 TICDPAAGTAGFLVAAGEYLREKNPELFRDEDLRKHFHEGMFHGYDFDATMLRIGSMNMQ 248

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +  +E         +I+   +L++D       +   L+NPPF    + +  A +      
Sbjct: 249 LHGIEG-------GDIRYKDSLAEDHAGDTDAYSLILANPPFAGSLDYETTAKDLLK--- 298

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   + K     +LF+      L+     GGRAA+++    LF   +     E+RR
Sbjct: 299 --------IVKTKKTELLFMALFLKLLK----PGGRAAVIVPDGVLF--GSSKAHKELRR 344

Query: 380 WLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            L+E+  ++ I+ LP+ +F     ++T + + +        G    +   D+     +  
Sbjct: 345 MLVEDHKLDGIIKLPSGVFKPYAGVSTAIVLFTK----TNSGGTHHVWFYDVQADGLSLD 400

Query: 439 KKRRIINDDQ 448
            KR+ + D +
Sbjct: 401 DKRQFLLDAE 410


>gi|257058611|ref|YP_003136499.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
 gi|256588777|gb|ACU99663.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
          Length = 1005

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 88/553 (15%), Positives = 177/553 (32%), Gaps = 93/553 (16%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + L    +          +    + +D+   V +       +       +G     +   
Sbjct: 450 KDLIDKFKKEEMPRIAISVDLMDTGVDIPEVVNLVFMKPVQSFIKLQQMIGRGTRNHEAC 509

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI-----CKNFS------GIELHPDTV 150
            Y+    +  K  F   DF       + +  +         K F+      G  L     
Sbjct: 510 KYLNRLPNGKKDEFLIIDFWENEFDRDPSDEVISQNLPITVKLFNTRLRLLGYYLDNQES 569

Query: 151 PD----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D     V  ++YE+L+ +           F TPR ++ L   ++           P   
Sbjct: 570 SDEQNQDVKGDLYEYLLGKLNISGRN--GQFRTPRHIIRLMVEMV----------DPKPN 617

Query: 207 RTLYDPTCGTGGFLTDAMNHVADC-----------GSHHKIPPILVP------------- 242
             + D   GT GFL ++  ++ +            G+ H I  +L P             
Sbjct: 618 ERIGDLAAGTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTA 677

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +  +       +    +++  ++               TLSK+    K     L NPPF 
Sbjct: 678 YDNDSGMTMLRIGSMNLMLHGIKY-------PRFFYQDTLSKEFKDEKSLDVALMNPPFK 730

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K               E         K     +LFL  +   L      GGR  +++  
Sbjct: 731 GKM-------------DEKDINPYLPTKCKKTELLFLYQILRVL----EMGGRCGVIVPD 773

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGK 421
             LF   +     +IR+ L+E + ++ +V++P+ +F     ++T + + +   T +R   
Sbjct: 774 GVLF--GSSKQHQDIRQKLIEENRLDGVVSMPSGVFKPYAGVSTAILLFTKGATTDR--- 828

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY---------RT 472
              I   D+     +   KR+ I ++    ILD + +R +  FS + +          + 
Sbjct: 829 ---IWFYDMEHDGFSLDDKRQPIEENDIPDILDCWRNRFDNGFSALRESMKAELSAKLQP 885

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +R+++   +      D       E      + +        + +KP+  QI      
Sbjct: 886 LKEKRLQLQEEIHRLRFEDAIASEDEETPRQVLESAEETLKVLEEEIKPLQGQINRLSRQ 945

Query: 533 ESFVKESIKSNEA 545
               K+ +K N+ 
Sbjct: 946 FWVDKQVVKGNKY 958


>gi|307748413|gb|ADN91683.1| HsdM [Campylobacter jejuni subsp. jejuni M1]
          Length = 496

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/537 (16%), Positives = 179/537 (33%), Gaps = 65/537 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKAMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EQEKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILRSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                 GR AI++    LF  +  +    +++ LL++  +E +++LP+ +F   + + T 
Sbjct: 329 ----NNGRCAIIVPEGVLF--QNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTN 382

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +   S       +     +   +L    +    K + +      + L  Y  R+    S 
Sbjct: 383 VLFFSKGLNSILKANDDKVYYYELIPPYK--LTKNKPLEYAHFNEFLKYYKERKITANSW 440

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           ++  +    R   +      +   +K      E   +  +     Q +  ++   + 
Sbjct: 441 LVSKKELEERNYDLSAK-NPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK 496


>gi|270643375|ref|ZP_06222163.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270317275|gb|EFA28841.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 189

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 24/197 (12%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M IR ++ D             + ++     K+  + ++NPPF       +   +   
Sbjct: 1   MNMAIRGIDYD------FGKHNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADD-- 52

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+  G P   + +  +L H+   L    +  G+ A++L++  +      + E E
Sbjct: 53  -----PRWAYGTPPKGNANFAWLQHMIYHL----SPNGKMALLLANGSM--NSQTNNEGE 101

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ ++  DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      
Sbjct: 102 IRKGIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYM--- 156

Query: 437 EGKKRRIINDDQRRQIL 453
           + +  R    D   +IL
Sbjct: 157 KDRVLRDFTADDIAKIL 173


>gi|194364814|ref|YP_002027424.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3]
 gi|194347618|gb|ACF50741.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3]
          Length = 527

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 166/445 (37%), Gaps = 87/445 (19%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                   ++   +L    +  + + L        V  +IYE+L+ +  +        F 
Sbjct: 119 YMQDADLEIKNESVLVAAVEMVNELPLT----QTDVKGDIYEYLLSKLTTAGIN--GQFR 172

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------ 232
           TPR ++     ++          +P     + DP+CGT GFL   M ++    S      
Sbjct: 173 TPRHIIDAMVEVV----------APQPYEVVCDPSCGTAGFLARTMEYLNRTHSSEAGTL 222

Query: 233 ----------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES---DPRRDLS 273
                           + K     +  G + +     V    ML+  +     + +  L+
Sbjct: 223 TDEDGNSSYTGDLLDAYRKHINSQMFWGFDFDTTMLRVSSMNMLLHGVSGANINYQDTLN 282

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           K+I++     ++ F    F   L+NPPF  K   D+  V  +            L     
Sbjct: 283 KSIKEHFPRQEENF----FDVVLANPPF--KGSLDEANVNPD---------VLALVATKK 327

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+ H+   L+L    GGRAA+++    LF   +     ++RR LLEN+ +E +++L
Sbjct: 328 TELLFVAHILRSLKL----GGRAAVIVPDGVLF--GSSKAHQQLRRELLENNQLEGVISL 381

Query: 394 PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P+ +F     ++T + + +     ER      +   DL     +   KR  +  +    +
Sbjct: 382 PSGVFRPYAGVSTAILLFTKGGQTER------VWFYDLRADGYSLDDKRTPLKGEGSNDL 435

Query: 453 LDIYVSRENGKFSRMLD--------YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
            D         + ++++         + FG R+       + +F++    +A  + D++ 
Sbjct: 436 PDAIAQW--AAYRKLVERNARKQTINKQFGDRK-------QKAFVVPAEAIAANKYDLSI 486

Query: 505 RKLSP-LHQSFWLDILKPMMQQIYP 528
            +     HQ    +  + ++Q++  
Sbjct: 487 NRYKEVEHQQVQYEDPRQILQRLRA 511


>gi|218440827|ref|YP_002379156.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173555|gb|ACK72288.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 356

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 147/381 (38%), Gaps = 49/381 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +      ++   +W+ A+ L  +  +   ++   ++    LR         +  + + 
Sbjct: 1   MAQL-EQIEAIERRLWEAADTLRSNSNYASNEYFIPVMGLIFLRHAYSRFLKVKEEIEKN 59

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYS--LSTLGSTNTRNNLESYIASFSDNAKAI 114
               GG    L  E F +         +++   +S     +    L + + S  +     
Sbjct: 60  LPKRGGKTRPLTKEDFSQKTAIFLKPEAQFDYLVSLKQDEDHSQALITAMESIEE----- 114

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDT---VPDRVMSNIYEHLIRRFGSE 169
               D+ S    L KA       +  + +   L+PD        +   IYE+ + +F + 
Sbjct: 115 ----DYQSLQGILPKAEYQDLDNEVLAKLLRTLNPDELKVADGDIFGRIYEYFLTQFANL 170

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +    +F TP  +V L   +L +PD  +          ++DP CG+GG    + + V  
Sbjct: 171 KAHDNGEFFTPISLVTLIANIL-EPDQGI----------IFDPACGSGGMFVQSAHFVE- 218

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               HK P +L   G E  P T  +    + +  LE D ++ +        T  +D F  
Sbjct: 219 --KQHKNPQMLTFRGLEKNPTTIRLAKMNLAVHGLEGDIQKAI--------TYYEDPFQM 268

Query: 290 K-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           + +  Y ++NPPF    E D D V+K+ +            K+S+G+ L++ +  + L  
Sbjct: 269 EGKADYVMANPPFNVD-EVDADKVKKDSRLPFGLPGTNKNKKVSNGNYLWISYFYSYL-- 325

Query: 349 PPNGGGRAAIVLSSSPLFNGR 369
             N  G+A  V+SS     GR
Sbjct: 326 --NERGKAGFVMSSQASSAGR 344


>gi|315225317|ref|ZP_07867133.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314944726|gb|EFS96759.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 499

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 82/469 (17%), Positives = 157/469 (33%), Gaps = 72/469 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E       + Y +F        S+    G     T++  L         
Sbjct: 33  MLFLK-IYDVKEEDWEFNEDSYQSFIPEECRWRSWATDKGDGNALTADALL-----DFVN 86

Query: 98  NNLESYIASFSDNAKAIFED----FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N L   + S                 F      ++   LL ++      +    D     
Sbjct: 87  NTLFPTLKSLEVTPDTPIHSSIVFTTFQDANQYMKDGVLLRQVVNVIDQLNFS-DYEESH 145

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               IYE +++   S     A +F TPR +      ++           P +   + D  
Sbjct: 146 AFGEIYEAILKEMQSAG--SAGEFYTPRALTDFMAEII----------EPQIGEKMADFA 193

Query: 214 CGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CGTGGF+T  +N +      +  K       +G E +   + +CV  +L+  +++     
Sbjct: 194 CGTGGFITSWLNTLDKKATTAEAKEAWAQSIYGIEKKQFPYMLCVTNLLLHNIDA----- 248

Query: 272 LSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +   ++L+KD+       +F   L NPP+G   + D                 P  
Sbjct: 249 --PAVVHDNSLTKDVLNYTDDDKFDVVLMNPPYGGSEKNDIKQ------------HFPSD 294

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S+ + LF++ +  +L+      GRAA++L    LF   A + +  I+  LL    + 
Sbjct: 295 LSSSETADLFMVLIMYRLKQ----NGRAAVILPDGFLF--GADNAKFAIKERLLRKFNLH 348

Query: 389 AIVALPTDLFF-RTNIATYLWILSNRKTEER-----RGKVQL--INATDLWTSIRNEGKK 440
            I+ LP  +F   T+IAT +    N + E         K     ++  + +         
Sbjct: 349 TIIRLPGSVFSPYTSIATNILFFDNVQAEGAEEGFCTHKTWFYRLDMPEGYKHFSKTKPM 408

Query: 441 RRIINDDQRRQILDIYVSREN-------GKFSRMLDYRTFGYRRIKVLR 482
           + +      + I D + +R          + SR+   +        + +
Sbjct: 409 QAV----HCQPIKDWWHNRVEIVSEDGKDEKSRVFTAQELLAMDCNLDQ 453


>gi|302520832|ref|ZP_07273174.1| type I restriction enzyme [Streptomyces sp. SPB78]
 gi|302429727|gb|EFL01543.1| type I restriction enzyme [Streptomyces sp. SPB78]
          Length = 506

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 150/459 (32%), Gaps = 71/459 (15%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   S  + +W        A  L       +  + I     ++RL+          +++
Sbjct: 3   TGELKSKVDRVWNAFWSGGIANPL-------EVMEQITYLLFVKRLDEI-----QTRKDR 50

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                G       F        +   +     +      + L  Y+     +        
Sbjct: 51  KARATGKPDPSPFFTDEQQDLRWQNFKVKDPEIMYGIVADGLFPYLRGMGGDDSTYAHH- 109

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                   +    LL K+     GI +           +IYE+++ +  +        F 
Sbjct: 110 -MKDARFTIPNPNLLAKVVDLLDGISMDAS----DTKGDIYEYMLAKIATSG--QNGQFR 162

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-------CG 231
           TPR ++ L   +            PG    + DP CGT GFL  A +++           
Sbjct: 163 TPRHIIDLMVEMT----------RPGPRDVICDPACGTAGFLVQAASYMRRVHREELLEA 212

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            H       + HG + +     +    ML+  +E+   R       + S         ++
Sbjct: 213 EHRGHFNDKMFHGFDFDTTMLRIGSMNMLLHGVENPDIR------YRDSLGESAAGEAEQ 266

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  AV+              + K     +LFL      ++    
Sbjct: 267 YSLILANPPFAGSLDYESTAVD-----------LQLIAKTKKTELLFLALFLRLMQT--- 312

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGRAA+++    LF   +     E+RR L+E+  ++A+V LP+ +F     ++T +   
Sbjct: 313 -GGRAAVIVPDGVLF--GSTKAHKELRRMLVEDQQLQAVVKLPSGVFKPYAGVSTAILFF 369

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
                    G    +   D+     +   KR  +  + R
Sbjct: 370 QK----TDSGGTDHVWFYDVQADGLSLDDKRNDLLPEDR 404


>gi|332877499|ref|ZP_08445246.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684605|gb|EGJ57455.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 498

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/509 (15%), Positives = 167/509 (32%), Gaps = 69/509 (13%)

Query: 35  ILPFTLLRRLECAL---EPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTS 84
           I     ++ L+      E   + + +  L        +     D +       +  +   
Sbjct: 32  ITYLLFMKMLDDKQLEKEAIANLIGDLLLNPTFPDGMWHNPTTDQDVPYNEMRWHVFKEM 91

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           E +       N       Y+           ED     T+ ++  A  L ++ +    I 
Sbjct: 92  EPTKMLNRVRNDVFIFLRYVGKEGSAYSKAMED-----TVFQITDARFLSRVIEGIDEI- 145

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
               +    +M ++YE+++    +  +     F TPR ++ +   L+           P 
Sbjct: 146 ---SSDGADMMGDVYEYMLGIMAASGTN--GQFRTPRHIIRMMVELM----------RPT 190

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVA 257
           +  T+ DP  G+ GF+ +A  ++ +  S         +     + HG + +     +   
Sbjct: 191 LDDTICDPAMGSAGFIMEAAKYITEHQSDELLNIEEKERFRKEIFHGSDSDASMLRIGCM 250

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++  ++         N+   ++LS +     R+  CL+NPPF    + D         
Sbjct: 251 NMMLHDVD-------EPNLYYRNSLSDENDDTNRYTLCLANPPFAGSLDTD--------- 294

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             ++        K     +LFL  +   L+     GGR A ++  + L           I
Sbjct: 295 --DIAHTLKAAVKTKKTELLFLALMMRMLQ----SGGRCASIVPDTVL--TGDSKAYKTI 346

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R  L++N  ++A++ +P+ +F   + ++T + I +         KV   +      S+  
Sbjct: 347 RSALVDNHCMQAVITMPSGVFQPYSGVSTAIIIFTKT-GAGGTDKVWFYDMRADGFSLTT 405

Query: 437 EGKKRRIIND--DQRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +   +   ND  D   +   L+    R   + S  +           +          + 
Sbjct: 406 QRTPQPEQNDIPDVISRFHNLEAETDRSRKEQSFFVTADEIRANGYDLSYKRYHEVEREA 465

Query: 493 TGLARLEADIT-WRKLSPLHQSFWLDILK 520
                 E  I    K      + + +  K
Sbjct: 466 VEYEAPETIIARMEKRQKTIDAAFAEFKK 494


>gi|153815628|ref|ZP_01968296.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756]
 gi|145847059|gb|EDK23977.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756]
          Length = 489

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 160/437 (36%), Gaps = 61/437 (13%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------- 97
             +E     +  K +    ++I++   +     S           L   N +        
Sbjct: 27  EVIEQLTYLMFAKQIDEREADIEMAELLSGEKQSHIFGESREEQALRWRNFKGMEARALH 86

Query: 98  ----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
               + +  ++ + + N  + F  +       ++ +   L K+      +    D     
Sbjct: 87  KHFVDRVFIFLINLNSNENSAFSRY-LKHATFKINEPLALQKVVAGLEDL-FENDIKDLD 144

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+++ +  S    GA  F TP+ +  +   L++          P     + DP 
Sbjct: 145 MQGDLYEYMLGKLNSAGRLGA--FRTPKHIRDMMVKLMM----------PTPDMKICDPA 192

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL------EPETHAVCVAGMLIRRLESD 267
           CGT GFL  +  ++     +         +G E       +     +    +++  +   
Sbjct: 193 CGTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLSCMNLMLHSV--- 249

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               ++  + +  ++SKD      +   L+NPPF       K  + KE+ N  L      
Sbjct: 250 ----INPQLNKQDSVSKDYQVKDAYDLILANPPF-------KGTINKENINESL----LA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   +   +LF+      L +    GGR A ++    LF   +      +R+ L+EN  +
Sbjct: 295 ITNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLF--GSSKAHKNLRKELIENQYL 348

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           EA++++P+ +F     ++T + I +         KV      D+     +   KR+ + +
Sbjct: 349 EAVISMPSGVFKPYAGVSTAILIFTKTNGTG-TDKVWF---YDMKADGYSLDDKRQPVQE 404

Query: 447 DQRRQILDIYVSRENGK 463
           +    I++ +  +EN +
Sbjct: 405 NDIPDIIERFHKKENEE 421


>gi|294668323|ref|ZP_06733426.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309641|gb|EFE50884.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 457

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 171/469 (36%), Gaps = 60/469 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    +L + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQTKALIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KY----LAFGGSNIDLESFVKVAGYSFYNTSE----YSLSTLGSTNTRNNLESYIASFSD 109
           +     + F   +I+ ++ V    +S    SE       + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAQNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKI----CKNFSGIELH-PDTVPDRVMSNIYEHLIR 164
             +   +   F      +   G             +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEVIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+         S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEGVRGKIRSVD----VYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +         I     Q+         +   L+  L          N+ QG+T+  
Sbjct: 235 HAIGEDKCMIYTQDIS----QKSSNLLRLNLILNNLVHSLN---------NVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E E       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +  +        + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLK----EKGKAAIVLPTGFITAQS--GIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++
Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDKVVLIDASGLGEKIKDGKNQK 437


>gi|26554276|ref|NP_758210.1| type I restriction-modification system M subunit [Mycoplasma
           penetrans HF-2]
 gi|26454285|dbj|BAC44614.1| type I restriction-modification system M subunit [Mycoplasma
           penetrans HF-2]
          Length = 490

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/468 (16%), Positives = 175/468 (37%), Gaps = 50/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   +  +  + + Y +    ++   ++      +   T +  L  L + +  
Sbjct: 33  MFFLKVYDSKEQEWK-ILSKDYQSIIPEHLQWRNWAIDNRSNNVLTGD-DLLKLVNNDLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++   S     +     + F      ++    L ++    + I+             
Sbjct: 91  PTLKNLQISTETPLRQKIVKYVFEDAANYMKDGIFLRQVINVINEIDFT-KYKERHEFGE 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR +      ++           P +   + D  CGTG
Sbjct: 150 IYETILKSLQSAGN--AGEFYTPRALTDFIVKMI----------DPKLGERVADFACGTG 197

Query: 218 GFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+NH+          +      +G E +P  + +C+  +L+  ++       +  
Sbjct: 198 GFLTSALNHLEKNSKTTEDNVMYNNSIYGIEKKPLPYLLCITNVLLHDVDEPKIFHTNSL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      +D     +F   L NPP+G     +K+A++            P   + S+ +
Sbjct: 258 EKN----VRDYKESDKFEIILMNPPYGGS---EKEAIKNNF---------PSTLRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF++ +  +L+      GR A ++    LF     + +  I+  LL    +  ++ LP 
Sbjct: 302 DLFIILMMYRLK----KNGRCAAIIPDGFLF--DTSNAKVAIKEKLLNEFNLHTVIRLPH 355

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +    N K  E     ++ +  + + +      K + I  +    +++
Sbjct: 356 SVFSPYTTINTNILFFENTKPTEETWFYRM-DMPEGYKNF----SKTKPIKIEHFNPVIE 410

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE  +    +D   F  ++       + ++ L+     ++E +I
Sbjct: 411 WWNNREEIE----VDG-NFKAKKYTKEELKKRNYDLNLCSFPQIEEEI 453


>gi|189467553|ref|ZP_03016338.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM
           17393]
 gi|189435817|gb|EDV04802.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM
           17393]
          Length = 498

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/508 (14%), Positives = 162/508 (31%), Gaps = 63/508 (12%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS- 93
           I     ++ L+       +                  +   +        E         
Sbjct: 32  ITYLLFMKMLDDKQREKEAIANLTGDVLLNPTFPEGVWRNPSTDKDVPYHEMRWHVFKEM 91

Query: 94  ------TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                    RN++  ++        A         T+ ++  A LL ++ ++   I    
Sbjct: 92  EPTKMLDRVRNDVFIFLRHVGKEGSAY--RKAMEDTVFQITNARLLSRVIESIENI---- 145

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            +    +M ++YE+++    +  +     F TPR ++ +   L+           P +  
Sbjct: 146 TSDGADMMGDVYEYMLGIMAASGTN--GQFRTPRHIIRMMVELM----------RPTLND 193

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGML 260
           T+ DP  G+ GF+ +A   + +  S               + HG + +     +    M+
Sbjct: 194 TICDPAMGSAGFIMEAAKFITEHQSDDLLNIGEGDRFRKEIFHGSDSDASMLRIGCMNMM 253

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  ++         N+   ++LS +     R+  CL+NPPF    + D           +
Sbjct: 254 LHDVD-------EPNLYYRNSLSDENNDTNRYTLCLANPPFAGSLDTD-----------D 295

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +        K     +LFL  +   L+     GGR A ++  + L           IR  
Sbjct: 296 IAHTLKAAVKTKKTELLFLALMMRMLQ----SGGRCASIVPDTVL--TGDAQAYKTIRSA 349

Query: 381 LLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L++   ++A++ +P+ +F   + ++T + I +   T     KV   +      S+  +  
Sbjct: 350 LVDKHCMQAVITMPSGVFQPYSGVSTAIIIFTKTGTGG-TDKVWFYDMRADGFSLTTQRT 408

Query: 440 KRRIIND--DQRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            +   ND  D   +   L+    R   + S  +           +          +    
Sbjct: 409 PQPEQNDIPDIISRFHNLEAETDRSRKEQSFFVTADEIRANGYDLSYKRYHEVEREVIEY 468

Query: 496 ARLEADIT-WRKLSPLHQSFWLDILKPM 522
              E  I    +      + + +  K +
Sbjct: 469 EAPETIIARMEERQKAIDAAFAEFKKLL 496


>gi|329119168|ref|ZP_08247858.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464727|gb|EGF11022.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 500

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 161/455 (35%), Gaps = 52/455 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E   + V   Y +        +++ K        T +  L  +      
Sbjct: 33  LLFLK-IYGSKEENWAIVDADYQSIIEPRFQWQNWAKDNKDGNAPTGDALLDFIDRELFP 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +   +   + I  D  F      ++   LL ++      I+   DT        
Sbjct: 92  ALKNLRVNEHTPLKQRIVRDI-FQDAKNFMKNGTLLRQLINAVDQIDFD-DTKERHAFGE 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V      ++          +P +  T+ D   GTG
Sbjct: 150 IYETILKSLQSAGN--AGEFYTPRAVTDFMVQVI----------APKLGETVADFAAGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFL  A+N +       K    L    +G E +P  H + +  +++  ++S   R  +  
Sbjct: 198 GFLVSALNALEPQVKTPKDRETLNQSLYGIEKKPLPHLLGITNLILHDIDSPRIRHGNAL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            Q      +D+         L NPP+G K            +   + +  P   + S+ +
Sbjct: 258 EQN----VRDVQPRDLHDIILMNPPYGGK------------ELELIKQNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+     +L+     GGRAAI++    LF         + R  LL +  +  IV LP 
Sbjct: 302 DLFIALALYRLKA----GGRAAIIIPDGFLFGNDTAKTALKTR--LLTDFDLHTIVRLPK 355

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQL---INA-TDLWTSIRNEGKKRRIIND---- 446
            +F   T+I T +   +     +R  +      ++  +D     + +  +    +D    
Sbjct: 356 SVFAPYTSITTNILFFNKPAQGQRPSEKLWFYRVDIPSDRKAFSKTKPMQLEHFSDCLSW 415

Query: 447 -DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
              R++I D    + +   +R  D        + +
Sbjct: 416 WHNRKEIKD---EQTDSHQARAFDKAEILANGVNL 447


>gi|139438844|ref|ZP_01772304.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC
           25986]
 gi|133775555|gb|EBA39375.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC
           25986]
          Length = 492

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 161/492 (32%), Gaps = 60/492 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E       + Y +        E     +        +            
Sbjct: 33  LFFLK-IYDAKEQEWEFHDDSYQSII-----PERLRWYSWAHDAKDGKALTGDELLDFVN 86

Query: 98  NNLESYIASFS----DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N+L   + S         + +     F+     ++   LL ++           +     
Sbjct: 87  NDLFKTLESLELAPDAPLRHVVVKAAFTDANNYMKDGILLRQVINEIDESVDFTEYKERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               IYE +++   S  +  A +F TPR V       L          +P +  T+ D  
Sbjct: 147 AFGEIYETILKDLQSAGN--AGEFYTPRAVTDFMAQAL----------APKLGETVADFA 194

Query: 214 CGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CGTGGFLT A+  +         +       +G E +   + +CV  ML+  +  D    
Sbjct: 195 CGTGGFLTSALKILDSQVQTPADRELYARSVYGIEKKQLPYLLCVTNMLLHDI--DNPEV 252

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              N  +            +F   L NPP+G              ++  +    P   + 
Sbjct: 253 FHDNSLEKDVREWKHKPDGQFDVVLMNPPYGGS------------ESASVQNNFPVALRS 300

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ + LFL  +  +L+     GGRAA+++    LF   +   E  I+R LLE+  +  ++
Sbjct: 301 SETADLFLGLILYRLKR----GGRAAVIIPDGFLFGQDSAKTE--IKRRLLEDMNLHTVL 354

Query: 392 ALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQR 449
            LP  +F   T+I T +    N    E       +    +          K + I  +  
Sbjct: 355 RLPQSVFAPYTSITTNVLFFDNTGASEG------VWFYRMDMPEGYKHFSKTKPIRIEHF 408

Query: 450 RQILDIYVSREN--------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             + + + +R +         K+  + + R  G+       P     IL    L R   +
Sbjct: 409 APVKEWWENRRDIEEDGNPKAKYYTVDELRDGGFNFDVCGYPHEEEEILPPDELIRNYKE 468

Query: 502 ITWRKLSPLHQS 513
              +  + + Q 
Sbjct: 469 ERAKLDAEIDQK 480


>gi|32477069|ref|NP_870063.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
 gi|32447617|emb|CAD79218.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
          Length = 552

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 143/429 (33%), Gaps = 61/429 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     ++RL+         + E         ++   F +       +  +   S     
Sbjct: 72  ITYLLFIKRLDDL-----HTLEENKANRTKKPMENRIFPEGKDEKKRSYEDLRWSRFKHF 126

Query: 95  NTRNNLESYIASFSDNAKAIFED-----FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
             +   +          + +  D              +    LL ++      + +    
Sbjct: 127 EPKEMFDVVNEHVFPFLRTLGGDGSTYTKHMKDARFTIPTPALLARVVDMIDQVPME--- 183

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  S        F TPR ++ L   L +          P     +
Sbjct: 184 -DRDTKGDLYEYMLGKIASAG--QNGQFRTPRHIIELMVELTV----------PTPTDVI 230

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIR 262
            DP CGT GFL  A  ++ +            K     + HG + +     +    ML+ 
Sbjct: 231 CDPACGTAGFLVVAGEYLREKHPEVLRDAKLKKHFHGDMFHGFDFDSTMLRIGSMNMLLH 290

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E+         + + S   +     +R+   L+NPPF    + +  A +         
Sbjct: 291 GVEN------PDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAKDLLQ------ 338

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                + K     +LFL      L+     GGRAAI++    LF   +      +R+ L+
Sbjct: 339 -----IVKTKKTELLFLTLFLRLLKP----GGRAAIIVPDGVLF--GSSKAHKTLRKMLV 387

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E+  ++ I+++P  +F     ++T + + +        G  + +   D+    ++   KR
Sbjct: 388 EDQKLDGIISMPGGVFKPYAGVSTAIVLFTK----TNSGGTKHVWFYDMQADGKSLDDKR 443

Query: 442 RIINDDQRR 450
             +   +++
Sbjct: 444 TELLPPEKQ 452


>gi|297572114|ref|YP_003697888.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932461|gb|ADH93269.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 231

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    S    IW  AE L GD+K  ++G V+LPFT+L RL+  L  T+ AV +  +   
Sbjct: 2   STDRLTSHVALIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKVTSV 61

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              +    + K  GY  +NTS ++L TL     N   NL  Y+ +F+  A+ + E ++F 
Sbjct: 62  PLQVKELQYAKATGYPLWNTSNFTLKTLLDDPDNLEQNLTYYVQAFAPAAREVMEAYNFY 121

Query: 122 STIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +   RL+KAGLLY++   F  S + LHPD V +  M  I+E LIRRF    +E A +  T
Sbjct: 122 NVFERLDKAGLLYQVLSEFTSSKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFT 181

Query: 180 PRDVVHLATALLLDPDDALFKE-SPGMIRTLYD 211
           PR+V+ L   LL +P++ + +  + G + +LY+
Sbjct: 182 PREVISLMVNLLFNPEEDINRLCADGAMASLYE 214


>gi|325958864|ref|YP_004290330.1| N-6 DNA methylase [Methanobacterium sp. AL-21]
 gi|325330296|gb|ADZ09358.1| N-6 DNA methylase [Methanobacterium sp. AL-21]
          Length = 505

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 154/452 (34%), Gaps = 79/452 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+          R K      S  + ES  K      ++      +     + R
Sbjct: 35  LIYMKRLDD-------DERAKEQNAKFSEEEYESLFKDCSDCRWSKWNNMAADEMLIHVR 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +  ++    D              +  +    LL +        E+H          +
Sbjct: 88  EKVFPFLRDLGDENSLY--RRYMKDAVFAIPTGSLLVETTSIID--EMHIKEQNLDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+L+    +        F TPR ++ +   ++           P +   + DP CGT 
Sbjct: 144 IYEYLLSELKTSG--KNGQFRTPRHIIQMMVKIV----------DPKVNEIICDPACGTA 191

Query: 218 GFLTDAMNHVADCGSHHKIPPI------------------------LVPHGQELEPETHA 253
           GFL ++  H+    +  ++  I                            G + +     
Sbjct: 192 GFLVNSYRHILKANTSQELIKIDDEGQEYNFKGDKLSKSEYLALKNNSLFGFDFDQTMVR 251

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +  +++  +        +  I Q +T+S        F   L+NPPF       K ++ 
Sbjct: 252 ISLMNLMMHGIS-------NPQIDQINTISMRYNQNPNFDVVLANPPF-------KGSIN 297

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           K+  N +           +   +LFL  + N L    N GGR A+++    LF       
Sbjct: 298 KDELNDDFS------INTTKTEILFLELMYNIL----NIGGRCAVIVPQGVLF--GNSRA 345

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
              IR+ LLE+  ++A++++P+ +F     ++T + I +  +      KV   +      
Sbjct: 346 HKSIRKKLLEDCRLDAVISMPSGVFRPYAGVSTGILIFTKGEPTA---KVGFYDMEADGY 402

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           ++  + K+  I        I++ + + E   F
Sbjct: 403 TL--DDKRTFIDGKGDIPDIIEKFKNSEPELF 432


>gi|237653839|ref|YP_002890153.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625086|gb|ACR01776.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 512

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 146/425 (34%), Gaps = 57/425 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     +RRL+     T    +   L    +N          G ++ +            
Sbjct: 32  ITYLLFIRRLDDG--HTLEESKATLLKRPMTNRIFPEGTDPKGRAYDDLRWSRFKNFAPA 89

Query: 95  NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                +  ++  F          +          +   GLL K+      + +       
Sbjct: 90  EMFEVVGEHVFPFLRTRGGDGSTYSHHMKDARFTIPTPGLLAKVVDMLDHVPME----DR 145

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+++ +  +        F TPR ++ L   L           +P     + DP
Sbjct: 146 DTKGDLYEYMLGKIAAAG--QNGQFRTPRHIIKLMVELT----------APAPKDVICDP 193

Query: 213 TCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             GT GFL  A  ++ +            +     + HG + +     +    M +  ++
Sbjct: 194 ASGTCGFLVAAGEYLREKHPALFNDAPAREHFHHGMFHGYDFDNTMLRIGSMNMALHGVD 253

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  + +I+   +L++D    + ++   L+NPPF    + +  A +           
Sbjct: 254 -------NPDIRYKDSLAQDHAGDEEKYSLILANPPFAGSLDYENTAKD----------- 295

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L K     +LFL      L+     GGRAA+++    LF   +     E+RR ++E 
Sbjct: 296 LLALVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRMIVEE 349

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             ++A+++LP+  F     ++T + I +        G    +   D+    R+   KR+ 
Sbjct: 350 QKLDAVISLPSGCFKPYAGVSTAILIFTK----TDSGGTDQVWFYDMLADGRSLDDKRQP 405

Query: 444 INDDQ 448
           +  ++
Sbjct: 406 LLPEE 410


>gi|148927925|ref|ZP_01811332.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147886728|gb|EDK72291.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 339

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 142/386 (36%), Gaps = 59/386 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           S+ SL   +W     L  D     +G     I     L+  +   +P  +          
Sbjct: 2   SSLSLVQKVWNYCNLLRDDGLS--YGDYLEQITYLLFLKMADEYSKPPFN---------- 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                        G        + SL  L  +N   +    + +       +     F +
Sbjct: 50  ------------RGTHIPTDINWQSLRNLTGSNLEAHYIEVLQNLGKQP-GMLGQIYFKA 96

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              R++    L+++     G       V   V   IYE L+ +F S+   GA  + TPR 
Sbjct: 97  Q-NRIQNPAQLHRLVGLIDGETWVGLDV--DVKGEIYEGLLEKFASDTKTGAGQYFTPRP 153

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++   T  L           P   +T+ D   GTGGF     +++A+    +K     + 
Sbjct: 154 LIQAMTECL----------RPEPSKTMADFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLK 203

Query: 243 H----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +    G E+ P T  +C+  + +  +      D    I    +L+ D  +GKRF Y L N
Sbjct: 204 YKTFTGNEIVPATARLCLMNLFLHNIGD---MDSKPPIHLTDSLASD--SGKRFDYILMN 258

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFGKK        +       L           S+  + F+ H+ ++L++     G+AA
Sbjct: 259 PPFGKKSSITVSNEDGTQSKESLTYERQDFWTTTSNKQLNFVQHICSQLKV----DGKAA 314

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLE 383
           +++  + LF G AG     IR+ LL+
Sbjct: 315 VIVPDNVLFEGGAGE---TIRKKLLQ 337


>gi|311113527|ref|YP_003984749.1| type I restriction-modification system DNA-methyltransferase
           [Rothia dentocariosa ATCC 17931]
 gi|310945021|gb|ADP41315.1| type I restriction-modification system DNA-methyltransferase
           [Rothia dentocariosa ATCC 17931]
          Length = 502

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 143/426 (33%), Gaps = 56/426 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS- 93
           I     +R L+   E  R       +     N  LE  V            +   +  + 
Sbjct: 32  ITYLLFVRFLDD--EQLRQEEMANSIRVHDPNYVLEDPVFRPEDENLRWHNFKNESPAAM 89

Query: 94  -TNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                N +  +I             +          +    LL K+    S I +     
Sbjct: 90  YETVANGVFPFIKGLGARLGGESSSYTQHMREARFTIPTPALLAKVVDPLSAIPMD---- 145

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 +IYE+++ +  +  +     F TPR ++HL   ++          +P    T+ 
Sbjct: 146 DRDTNGDIYEYMLSKIAASGTN--GQFRTPRHIIHLMVDMV----------APTAADTIC 193

Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           DP CGT GFL  A  +V +            +     + HG + +     +    +L+  
Sbjct: 194 DPACGTAGFLVAANEYVREHSVQELTNTVALRHYHNDMFHGFDFDSTMLRIASMNLLMHG 253

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +++           + S         +++   L+NPPF    + ++ A           R
Sbjct: 254 VKN------PLVEYRDSLSEGAAGESEKYSLILANPPFTGSIDYEQTA-----------R 296

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 K     +LFL      L+     GGRAA ++    LF   + +   ++R+ L+E
Sbjct: 297 DLQSTVKTKKTELLFLALFLRLLKP----GGRAAAIVPDGVLF--GSSTAHKKLRKMLVE 350

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN--ATDLWTSIRNEGKK 440
           +  ++A+V+LP+ +F     ++T +   +   +      V   +  A       +    K
Sbjct: 351 DQKLDAVVSLPSGVFKPYAGVSTAILFFTKTNSGG-TDDVWFYDVQADGFSLDDKRAPVK 409

Query: 441 RRIIND 446
              + D
Sbjct: 410 ANDLPD 415


>gi|313114695|ref|ZP_07800197.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622920|gb|EFQ06373.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 510

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 141/418 (33%), Gaps = 68/418 (16%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                +  +    +L KI      +  H D     +  ++YE+++ +  +        F 
Sbjct: 134 YMDDAMFLIPTPQVLQKIITGLEDLYTH-DIADLDMQGDLYEYMLGKLATAGRN--GQFR 190

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  ++ +   L+           P     + DP CGT GFL  +  +V         P 
Sbjct: 191 TPLHIIDMMVELV----------QPTPDDFICDPACGTAGFLVSSAKYVRKHYGDDMTPE 240

Query: 239 ILVPH------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G + +     +    +++  +        +  I    ++SK      ++
Sbjct: 241 QWQHFAGPMFTGFDTDRTMLRISAMNLMLHSI-------TNPEIDYKDSVSKQNSICSKY 293

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             CL+NPPF       K  V+ E  N +L      +       +LFL      L+     
Sbjct: 294 TVCLANPPF-------KGTVDAESINDDL----KAVTNTKKTELLFLALFLRMLKT---- 338

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILS 411
           GGR A ++    LF   +      IR+ L+EN  + A++++P+ +F     ++T + + +
Sbjct: 339 GGRCACIVPDGVLF--GSSKAHQSIRKELIENHQLRAVISMPSGVFKPYAGVSTAVLVFT 396

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKFS 465
                   G    +   D+     +   KR  + ++    I+  + +      R+  + S
Sbjct: 397 KTGA----GGTDKVWFYDMKADGFSLDDKRTEVKENDIPDIIARFHNLNAEIDRKRTEQS 452

Query: 466 RMLD-------------YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +               +      + V  P     + D   L  +E      +L  +
Sbjct: 453 FFVPKEEIAANGYDLSINKYKETEYVPVEYPSTQEILADLHEL-EMEITKGLAELEEM 509



 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 610 HVPDAYIDKIFIDEK----DKEIGRVGYEINFNRFF---YQYQPSRKLQDIDAELKGVEA 662
           H  +A ID+   ++      +EI   GY+++ N++    Y        Q+I A+L  +E 
Sbjct: 438 HNLNAEIDRKRTEQSFFVPKEEIAANGYDLSINKYKETEYVPVEYPSTQEILADLHELEM 497

Query: 663 QIATLLEEM 671
           +I   L E+
Sbjct: 498 EITKGLAEL 506


>gi|297587005|ref|ZP_06945650.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
 gi|297574986|gb|EFH93705.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
          Length = 489

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 144/391 (36%), Gaps = 59/391 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++      I+   D        +IYE +++   S     + +F T
Sbjct: 114 FEDANNYMKDGVLLRQVINVIDEIDFS-DYEESHAFGDIYESILKELQSAG--SSGEFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIP 237
           PR V  L   ++           P +   + D  CGTGGFLT  +  +         +  
Sbjct: 171 PRAVTDLMAIMI----------KPKIGEKMADFACGTGGFLTSWLKELKKQVKTVADEEA 220

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---GKRFHY 294
                +G E +   + +C+  MLI  L+         NI   ++L KD+       +F  
Sbjct: 221 YSNSIYGIEKKQFPYMLCITNMLIHDLD-------VPNIYHDNSLLKDILDYTDEDKFDV 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPP+G   ++D                 P     S+ + LF+  +  +L+      G
Sbjct: 274 ILMNPPYGGSEKEDVK------------NHFPQDLASSETADLFMSVIMYRLK----ENG 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413
           RAA++L    LF   + + +  I++ L+    +  I+ +P  +F   T+I T +    N 
Sbjct: 318 RAAVILPDGFLF--GSDNAKINIKKNLINKFNLHTIIRMPNSVFAPYTSITTNILFFDN- 374

Query: 414 KTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-----SRM 467
                 GK +      +          K + +  +   +++D + +RE  +      S+ 
Sbjct: 375 -----TGKTKETWYYRMDMPEGYKNFSKTKPMKLEHFDKVVDWWNNREEIEIDGFYKSKK 429

Query: 468 LDYRTFGYRRIKVLR---PLRMSFILDKTGL 495
              +    +   + +   P     ILD   L
Sbjct: 430 FTAQEIVDQNYNLDQCGYPHEEEIILDPMDL 460


>gi|134046196|ref|YP_001097681.1| N-6 DNA methylase [Methanococcus maripaludis C5]
 gi|132663821|gb|ABO35467.1| N-6 DNA methylase [Methanococcus maripaludis C5]
          Length = 499

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/508 (16%), Positives = 169/508 (33%), Gaps = 97/508 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++R+E        + R           D E+         ++            + R
Sbjct: 35  LIFMKRMEDEDIKREQSSRLSGETHVSIFKDNENMK-------WSKWTNMEGKEMLNHVR 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +N+  ++ S  +  K    +   ++ +  +  A LL +  K      LH          +
Sbjct: 88  DNVFPFLRSLGE--KDSLYNTYMNNAVFAIPNASLLVEAVKIVE--NLHIKEQNRDAKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+     + +     F TPR ++ +   L            P +   + DP CGT 
Sbjct: 144 LYEYLLSEL--KTAGKNGQFRTPRHIIKMMVELT----------DPDVGDKICDPACGTA 191

Query: 218 GFLTDAMNHVADCGSH------------------------HKIPPILVPHGQELEPETHA 253
           GFL  A  ++    S                         H        +G E +     
Sbjct: 192 GFLIAAYEYLLKKHSSAEFIKIDEDGNEYGYKGDKLDSKGHDFLRNETFYGSEFDQTMVR 251

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +  +++  +E+          Q+ S +  D + G  ++  L+NPPF  K   DK  +E
Sbjct: 252 IALMNLMMHGIENPNI------FQKNSLVECDKYKG-HYNVILANPPF--KGSVDKSEIE 302

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                                 +LFL  + N L +    GGR A+++    LF       
Sbjct: 303 GNFTTTTTKT-----------ELLFLELMYNLLTI----GGRCAVIIPDGVLF--GNSKA 345

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
             +IR  +L+N  ++A++++P+ +F     ++T + I +  +  ++      I   D+  
Sbjct: 346 HKQIRERILKNCRLDAVISMPSGVFKPYAGVSTGILIFTKGEPTKK------IWFYDMQA 399

Query: 433 SIRNEGKKRRIINDD-QRRQILDIYVSR----------------ENGKFSRMLDYRTFGY 475
                  KR  I+       I++ + +R                    F    D     Y
Sbjct: 400 DGFTLDDKRNKIDGKGDIPDIIERFKNRFNEPNDDKTKKHFFVPVEEIFKNDFDLSLSKY 459

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++I           + +  + +LE  I 
Sbjct: 460 KKINYEEVEYDDPKVIQNRILKLELGIQ 487


>gi|317502417|ref|ZP_07960581.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090322|ref|ZP_08339206.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896155|gb|EFV18262.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401457|gb|EGG81042.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 489

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/505 (15%), Positives = 176/505 (34%), Gaps = 67/505 (13%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------- 97
             +E     +  K +    ++I++   +     S           L   N +        
Sbjct: 27  EVIEQLTYLMFAKQIDEREADIEMAELLSGEKQSHIFGESREEQALRWRNFKGMEARALH 86

Query: 98  ----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
               + +  ++ + + N  + F  +       ++ +   L K+      +    D     
Sbjct: 87  KHFVDRVFIFLINLNSNENSAFSRY-LKHATFKINEPLALQKVVAGLEDL-FENDIKDLD 144

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+++ +  S    GA  F TP+ +  +   L++          P     + DP 
Sbjct: 145 MQGDLYEYMLGKLNSAGRLGA--FRTPKHIRDMMVKLMM----------PTPDMKICDPA 192

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL------EPETHAVCVAGMLIRRLESD 267
           CGT GFL  +  ++     +         +G E       +     +    +++  +   
Sbjct: 193 CGTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLSCMNLMLHSV--- 249

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               ++  + +  ++SKD      +   L+NPPF       K  + KE+ N  L      
Sbjct: 250 ----INPQLNKQDSVSKDYQVKDAYDLILANPPF-------KGTINKENINESL----LA 294

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +   +   +LF+      L +    GGR A ++    LF   +      +R+ L+EN  +
Sbjct: 295 ITNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLF--GSSKAHKNLRKELIENQYL 348

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           EA++++P+ +F     ++T + I +         KV      D+     +   KR+ + +
Sbjct: 349 EAVISMPSGVFKPYAGVSTAILIFTKTNGTG-TDKVWF---YDMKADGYSLDDKRQPVQE 404

Query: 447 DQRRQILDIYVSRENG------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +    I++ +  +EN       + S M+D +        +                  E 
Sbjct: 405 NDIPDIIERFHKKENEEDRERTEQSFMVDKQEIIDNGYDLSINKYKKIEYVPVEYPPTEE 464

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQ 525
            +   +      +     L+ ++++
Sbjct: 465 ILAEIEKLNEEITKETAELRALLRK 489


>gi|226951290|ref|ZP_03821754.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244]
 gi|226837963|gb|EEH70346.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244]
          Length = 493

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/545 (15%), Positives = 181/545 (33%), Gaps = 79/545 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           TG   S  + IW       G     +  + +     +RRL+          +EK      
Sbjct: 3   TGEIKSKIDQIWNAFWS-GGISNPLEVMEQMTYLLFIRRLDEI-----QITKEKKANRLK 56

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-----RNNLESYIASFSDNAKAIFEDFD 119
           + ++   F     +  ++       TLG   T      N +  +I +     +  +    
Sbjct: 57  TAVEHPIFTPEQDHLRWSK----FITLGDAATLYNTVANEVFPFIKNLGAEDETTYSH-H 111

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  +    LL K+    + + +           +IYE+++ +  S        F T
Sbjct: 112 MKDARFTIPTPALLTKVVDLVADVPMD----DKDTKGDIYEYMLGKIASAG--QNGQFRT 165

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +   L+           P    T+ DP CGT GFL  A  ++ D  S       
Sbjct: 166 PRHIIKMIVELM----------KPRPTDTICDPACGTAGFLVAASEYLNDHYSTEIFANP 215

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K        G + +     +    M++  +E+       +   + S         ++
Sbjct: 216 AAAKRFSEETFFGYDFDSTMLRIGSMNMMLHGVEN------PRIENRDSLSETHSHIAEK 269

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  A           +    + K     +LFL      L+    
Sbjct: 270 YSLILANPPFAGSLDNESCA-----------KNIQAVVKTKKTELLFLALFLRLLKT--- 315

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGRAA+++    LF   + +    +R+ ++E   +EAI+++P+ +F     ++T + I 
Sbjct: 316 -GGRAAVIVPDGVLF--GSSTAHKALRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIF 372

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR-----------QILDIYVSR 459
           +        G    +   D+     +   KR  ++  +             + L+    R
Sbjct: 373 TK----TMSGGTDKVWFYDMQADGYSLDDKRNELDASKHENNNIPDLIARFKNLEGEKDR 428

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +  + S M+D          +        + ++         +   ++        +  L
Sbjct: 429 KATEQSFMVDKADIAANGYDLSINRYKEVVYEQVEYETPSKILADLEVLEQDILKGMATL 488

Query: 520 KPMMQ 524
           K +++
Sbjct: 489 KELLK 493


>gi|149203431|ref|ZP_01880401.1| putative type I restriction enzyme M protein [Roseovarius sp.
           TM1035]
 gi|149143264|gb|EDM31303.1| putative type I restriction enzyme M protein [Roseovarius sp.
           TM1035]
          Length = 510

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 143/414 (34%), Gaps = 68/414 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
           T L      L        E  L   G   +   F +   +  ++   +  +       R+
Sbjct: 33  TFLMF--ARLLDINETRDENRLKRAGKRDNPPRFKEDEQHLRWSHFRHLGADEMLPLIRD 90

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            +  +    S  + + F +F        ++K  LL K       + L           ++
Sbjct: 91  EVFPHFRK-SSTSGSAFAEF-MKDAQLMIQKPSLLVKAVNMIDKLPLT----EGDTKGDL 144

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+ +  +        F TPR ++ L   LL          +P     + DP+ GTGG
Sbjct: 145 YEYLLSKLTTAGIN--GQFRTPRHIIKLMIELL----------APQPNEIIGDPSAGTGG 192

Query: 219 FLTDAMNHVADCG---------------------------SHHKIPPILVPHGQELEPET 251
           FL + M ++                                H +     + HG + +   
Sbjct: 193 FLVETMQYLMKEHTSEEGIDEVTDPETGKTEKIYTGDLLEDHREHIRSKMFHGFDFDATM 252

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +    +++  ++ DP       +    +          F   L+NPPF       K  
Sbjct: 253 LRIAAMNLMLHGVD-DPDIHYQDTLSTSFSDKYPQSASDGFDVILANPPF-------KGT 304

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++ E  +  L R      K     +LFL+ +   L+   +  GR+A ++    LF   + 
Sbjct: 305 LDFEDVHPGLLR----KVKTKKTELLFLVLILRMLK---DNSGRSATIVPDGVLF--GSS 355

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQL 424
           +    +RR L++++ +EA+++LP+ +F     ++T + +        R   V  
Sbjct: 356 TAHVALRRMLIDDNQLEAVISLPSGVFKPYAGVSTGILVFRKG---GRTDDVFF 406


>gi|146319438|ref|YP_001199150.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
 gi|145690244|gb|ABP90750.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
          Length = 237

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 22/222 (9%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   ++NPP+  KW+ ++++  K+ +  E G+  P     S     F++H    L   
Sbjct: 16  RSFDAVVANPPYSAKWD-NRESKLKDPRFMEYGKLAPA----SKADFAFILHSLYHL--- 67

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  G  AIVL    LF G A   E  IR+ ++E + ++A++ LP +LF+ T I T + +
Sbjct: 68  -NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEKNYLDAVIGLPANLFYGTGIPTTILV 123

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
               +   +   V  I+A+  +   +N    +  ++DD   +I++ Y +R++  K++ + 
Sbjct: 124 FKKNR---QTKDVFFIDASKEFEKGKN----QNHLSDDMVEKIVETYHNRQSVDKYAHLA 176

Query: 469 DYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                      + + R +      ++  L ++   +   +L 
Sbjct: 177 SIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQLEQDRLE 218


>gi|255658632|ref|ZP_05404041.1| type I restriction-modification system, M subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849006|gb|EEX69013.1| type I restriction-modification system, M subunit [Mitsuokella
           multacida DSM 20544]
          Length = 490

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 130/357 (36%), Gaps = 55/357 (15%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K       F  T   ++   LL ++      I+L         + +IYE +++   S   
Sbjct: 106 KKRIVKTMFEETNQYMKDGVLLRQVINVIDDIDL-ESYDNMHALGDIYETILKELQSAG- 163

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230
             A +F TPR V       +           P +   + D  CGTGGFL   +  +    
Sbjct: 164 -RAGEFYTPRAVTDFMADRI----------EPHLGERMADFACGTGGFLVSWLRELEKQI 212

Query: 231 -GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT- 288
                +       +G E +   + + +  +L+  ++       + +I  G++L  D+   
Sbjct: 213 AAPDDRALWNHSVYGIEKKQFPYMLAITNLLLHGVD-------NPDIDHGNSLLHDVLDY 265

Query: 289 --GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +F   L NPP+G   +KD  +   +                S+ + LF+  +  +L
Sbjct: 266 TEKDKFDKILMNPPYGGSEKKDVMSHFPDDLAD------------SETADLFMSVILYRL 313

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
           +     GGRAA+VL    LF          I++ L+    +  IV LP  +F   T+I T
Sbjct: 314 KQ----GGRAAVVLPDGFLFGTDNTK--VNIKKKLMAECDLHTIVRLPGSVFAPYTSITT 367

Query: 406 YLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRIIND------DQRRQILD 454
            +         E   K+    ++  + +         R    D      D R++IL+
Sbjct: 368 NILFFDRTHPTE---KIWFYRLDMPEGYKHFSKTKPMRLEHFDPVKAWWDDRQEILE 421


>gi|32477086|ref|NP_870080.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1]
 gi|32447634|emb|CAD79235.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1]
          Length = 552

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 143/429 (33%), Gaps = 61/429 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     ++RL+         + E         ++   F +       +  +   S     
Sbjct: 72  ITYLLFIKRLDDL-----HTLEENKADRTKKPMENRIFPEGKDEKKRSYEDLRWSRFKHF 126

Query: 95  NTRNNLESYIASFSDNAKAIFED-----FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
             +   +          + +  D              +    LL ++      + +    
Sbjct: 127 EPKEMFDVVNEHVFPFLRTLGGDGSTYTKHMKDARFTIPTPALLARVVDMIDQVPME--- 183

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  S        F TPR ++ L   L           +P     +
Sbjct: 184 -DRDTKGDLYEYMLGKIASAG--QNGQFRTPRHIIELMVELT----------APTPTDVI 230

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIR 262
            DP CGT GFL  A  ++ +            K     + HG + +     +    ML+ 
Sbjct: 231 CDPACGTAGFLVVAGEYLREKHPEVLRDAKLKKHFHGDMFHGFDFDSTMLRIGSMNMLLH 290

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E+         + + S   +     +R+   L+NPPF    + +  A +         
Sbjct: 291 GVEN------PDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAKDLLQ------ 338

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                + K     +LFL      L+     GGRAAI++    LF   +      +R+ L+
Sbjct: 339 -----VVKTKKTELLFLTLFLRLLKP----GGRAAIIVPDGVLF--GSSKAHKTLRKMLV 387

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E+  ++ I+++P  +F     ++T + + +        G  + +   D+    ++   KR
Sbjct: 388 EDQKLDGIISMPGGVFKPYAGVSTAIVLFTK----TNSGGTEHVWFYDMQADGKSLDDKR 443

Query: 442 RIINDDQRR 450
             +   +++
Sbjct: 444 TELLPPEKQ 452


>gi|160914344|ref|ZP_02076563.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991]
 gi|158433817|gb|EDP12106.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991]
          Length = 494

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 155/478 (32%), Gaps = 67/478 (14%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------------SF 107
                  +D + ++ +    F  ++       G   T + L  ++             + 
Sbjct: 42  AKEQDWEMDEDDYISIIPDQFKWSNWAHDDGSGKAITGDELLDFVNIELFPALKNLEVNK 101

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
               K       F      ++   LL ++      ++L  D         IYE +++   
Sbjct: 102 ETPIKKSIVKTTFEDANNYMKDGVLLRQVINVIDKLDLG-DYEESHAFGEIYESILKELQ 160

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S     + +F TPR V      ++           P +  T+ D  CGTGGFLT  +  +
Sbjct: 161 SAG--SSGEFYTPRAVTDFMAKMI----------EPKIGETMADFACGTGGFLTSWIKEL 208

Query: 228 ADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +    ++         +G E +   + +C+  ML+  +  D  R    N      L  D
Sbjct: 209 ENKIQTNEDRRKFDSSIYGIEKKQFPYMLCITNMLLHGI--DIPRIEHDNSLLYDVL--D 264

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F   L NPP+G   + D                 P     S+ + LF+  +  +
Sbjct: 265 YTDDDKFDVILMNPPYGGNEKSDVK------------NHFPSDLASSETADLFMSVIMYR 312

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+      GR A++L    LF     + +  I++ LL    +  IV +P  +F   T+I 
Sbjct: 313 LK----ENGRVAVILPDGFLFGTD--NAKVSIKKKLLNEFNLHTIVRMPHSVFSPYTSIT 366

Query: 405 TYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSREN-- 461
           T +            GK +      L          K + +  +     +  + +RE   
Sbjct: 367 TNILFFDK------TGKTKETWFYRLDMPEGYKNFSKTKPMKLEHFDPAIKWWNNREEIS 420

Query: 462 -------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                   K+S+  +     Y       P     IL    L +   +      + + +
Sbjct: 421 IDGFDKAKKYSK-AELEEKNYNLDLCGYPHEEEEILPPKDLIKEYQEKRKSLNADIDR 477


>gi|319951808|ref|YP_004163075.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237]
 gi|319420468|gb|ADV47577.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237]
          Length = 552

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 181/501 (36%), Gaps = 86/501 (17%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           ++ +L   +  V E   A   +  +     +      ++  +   +     + RNN+  +
Sbjct: 73  IDESLYRPKPEVTETEKARLYNKREKALTPRPKKELKWSFFKAMPADDMLVHFRNNVFPH 132

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-------HPDTVPDRVMS 156
           I   +D   + F  +   + +  +EK  LL +  K    I L               +  
Sbjct: 133 IKDLNDET-SSFTKY-MKNAVFIIEKPSLLVEAIKKVDEIFLEIAEDAKDGKQSFQDIQG 190

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE L++   +        F TPR ++ L   L            P +   + DP CGT
Sbjct: 191 DVYEMLLKEIATAG--KNGQFRTPRHLIKLLAELT----------EPKLGHKIADPACGT 238

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL--------------------------VPHGQELEPE 250
           GGFL  A  ++       K P +L                            +G +++  
Sbjct: 239 GGFLLGAYQYILSDLVRQKEPDLLVADEDGFERASISSVLDKKNKQILNDSFYGFDIDTT 298

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
              + +  +++  ++       + +I+   +LSK+      +   L+NPPF  K      
Sbjct: 299 MVRLGLMNLMMHGID-------NPHIEYKDSLSKNYNETGDYDIVLANPPFTGK------ 345

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            ++K   N +LG             +LFL  ++  L      GG+AA+++    LF G  
Sbjct: 346 -LDKGDVNPDLG------IDTGSTELLFLARISKMLRA----GGKAAVIIPEGVLFGGS- 393

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATD 429
              +   R  LL+++ +EA+++LP   F   T + T + + +  + + +      +    
Sbjct: 394 -KAQKATREILLKDNQLEAVISLPAGAFKPYTGVKTAILVFTKVEEDSKTWHTDKVWFYA 452

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-----------SRMLDYR-TFGYRR 477
           L     +    RR + ++    +   Y +R+  ++           + + +      Y R
Sbjct: 453 LENDGYSLDDNRRKLEENPLPVVKSEYTARKTSEYPDRKNHFFVPLAEIQENDLDLSYNR 512

Query: 478 IKVLRPLRMSFILDKTGLARL 498
            K       ++   K  LA+L
Sbjct: 513 YKEYEYTEQTYEPPKEILAKL 533


>gi|308179092|ref|YP_003918498.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307746555|emb|CBT77527.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 506

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 149/442 (33%), Gaps = 66/442 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     L+RL+           E+  +  G  ++   F +       +  +   S   + 
Sbjct: 32  ITYLLFLKRLDDN-----QIAAERKASRIGKPLENPVFPEGVDKFGRSYQDMRWSKFKNF 86

Query: 95  NTRNNLESYIASFSDNAKAIFEDF----------DFSSTIARLEKAGLLYKICKNFSGIE 144
           +       +  S     +                        + K  LL K       I 
Sbjct: 87  DKSEMFAVFNESIFPFLREELTRQSDGSDSSYTHHMKDARFTITKDHLLQKAVDLIDEIP 146

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +           ++YE+++ +  +  +     F TPR ++ L  A+           +P 
Sbjct: 147 MD----DRDTKGDLYEYMLSKIATAGTN--GQFRTPRHIIELLVAM----------RNPQ 190

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-------ILVPHGQELEPETHAVCVA 257
            +  + DP  GT GFL  +  ++ D        P           HG + +     +   
Sbjct: 191 PMEAICDPASGTCGFLMASGEYLRDNNPELMFDPEQRAFFNNQQFHGFDFDSTMLRIGAM 250

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L+  +E+    +        S         +++   L+NPPF          ++ E+ 
Sbjct: 251 NLLLHGIENPVIENRDSLADLHSA------DEEKYDVILANPPFAGS-------LDSENV 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           + EL +      K     +LFL      L+     GGRAA+++    LF   +     ++
Sbjct: 298 SKELLK----TVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKDL 347

Query: 378 RRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R+ L+E+  +EA+V LP+ +F     ++T +       T    G  + +   D+     +
Sbjct: 348 RKQLVEDQQLEAVVKLPSGVFKPYAGVSTAVLFF----TRTNSGGTENVWFYDVTADGFS 403

Query: 437 EGKKRRIINDDQRRQILDIYVS 458
              KR  +       +L+ + +
Sbjct: 404 LDDKRNPLESSDLPDVLERWKA 425



 Score = 37.0 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 625 DKEIGRVGYEINFNRFF---YQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             EI   GY+++ NR+    Y+    R   +I A+++ ++A IAT L E+  
Sbjct: 452 KSEIAENGYDLSINRYKEIEYEEVEHRTPAEIIADIEQLDADIATGLAELKG 503


>gi|152997208|ref|YP_001342043.1| N-6 DNA methylase [Marinomonas sp. MWYL1]
 gi|150838132|gb|ABR72108.1| N-6 DNA methylase [Marinomonas sp. MWYL1]
          Length = 545

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 172/504 (34%), Gaps = 81/504 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
               R L+   E           AF     D +    +   +F N S   L         
Sbjct: 35  LMFARMLDMQEEAEERKANRTGKAFVRLFPDTKEGQLLRWKNFKNLSGKDLHKHLKNEVY 94

Query: 98  NNLESY-----IASFSDN----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                      I    ++    A     D+        ++   +L    +    + L+  
Sbjct: 95  PYFSKLGQVADIDQVGEDTPVKAMGHISDY-MEDADLEIKNESVLVAALEMVDSLPLN-- 151

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  +IYE+L+ +  +        F TPR ++     ++           P    T
Sbjct: 152 --QSDVKGDIYEYLLSKLTTAGIN--GQFRTPRHIIDAMIEII----------DPQPWDT 197

Query: 209 LYDPTCGTGGFLTDAMNHVA------------DCGSHHKIPPILVPH----------GQE 246
           + DP+CGT GFL   M ++             + G+ H    +L  +          G +
Sbjct: 198 ICDPSCGTAGFLARTMEYLNRKHTSPENIWTDEEGNQHYPGDLLENYREHISDDMFWGFD 257

Query: 247 LEPETHAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
            +     V    M++  +       +  L+K+I++     ++ F    F   L+NPPF  
Sbjct: 258 FDTTMLRVSSMNMMLHGVNGSNVLYQDTLNKSIRENFPQQEENF----FDVILANPPF-- 311

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                K ++++ + N EL      + K     +LF+ H+   L+L    GGRAA+++   
Sbjct: 312 -----KGSLDETNTNPEL----LSMVKTKKTELLFVAHILRSLKL----GGRAAVIVPDG 358

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKV 422
            LF   +     ++R+ L+EN+ +E I++LP+ +F     ++T + + +   T ER    
Sbjct: 359 VLF--GSSKAHQQLRQELIENNQLEGIISLPSGVFKPYAGVSTAILLFTKGGTTER---- 412

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRTFGYRRIKV 480
             +   DL     +   KR  +  +    + D     +  +       D+  FG      
Sbjct: 413 --VWFYDLQADGLSLDDKRTPLKGEGTNDLPDAIAKWKAYRQLVESNFDFSQFGDDAQGC 470

Query: 481 LRPLRMSFILDKTGLARLEADITW 504
             P   +             D   
Sbjct: 471 ANPENAAAYFQDKTQKAFVVDAAD 494


>gi|184155502|ref|YP_001843842.1| putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum IFO 3956]
 gi|183226846|dbj|BAG27362.1| putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum IFO 3956]
 gi|299783284|gb|ADJ41282.1| Putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum CECT 5716]
          Length = 457

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 132/349 (37%), Gaps = 44/349 (12%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +    S       TP  +  L   L     D D+ +          +YD T G GG L +
Sbjct: 131 YVDLESRLNGRTNTPDQINVLMAQLANLSFDGDEPV---------RIYDSTSGWGGSLLE 181

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + +          +   GQEL  + +  C     +  L  D     + N   G  L
Sbjct: 182 MRRVIPNS-------RKVRLLGQELNAKAYLFCEM---VLGLLDDDNTSHALN--NGDAL 229

Query: 283 SKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             D  F        +++PP+  +W  D + +E+    G   + G  LP  S     F++H
Sbjct: 230 VADWPFGDSGADVIINDPPYSMRWNPDPNLLER----GIYHKIGV-LPPKSRADFAFVLH 284

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L    N  G   I L    LF G A   E++IR++LLE + IEA++ LP +L   T
Sbjct: 285 GLAHL----NDNGTMVIQLPHGVLFRGSA---EAKIRQYLLERNYIEAVIGLPANLQSTT 337

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            I T + +L   +   +R  V  I+A+D       + + R +++     +I++ Y     
Sbjct: 338 AIPTMILVLRKNR---KRKDVLFIDASD---DEVKKARSRDLLSTSAVNKIVETYHKFVS 391

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
             +++ +   +        +  P  +   +    ++  E +    K+  
Sbjct: 392 IQRYAYVATPKEIIENDYNLNIPRYVDTYIPPKLISVSELENKIVKIDQ 440


>gi|329730505|gb|EGG66894.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 240

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 24/250 (9%)

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +   TL    F G  F   ++NPP+  KW  D      E  +G        L   S    
Sbjct: 2   RNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADF 56

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP 
Sbjct: 57  AFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPA 109

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D 
Sbjct: 110 NIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDT 163

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPL 510
           Y  +E   K+S     +        +  P  +    ++  +     + +     ++++ +
Sbjct: 164 YKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEI 223

Query: 511 HQSFWLDILK 520
            Q     + +
Sbjct: 224 EQEINAYLKE 233


>gi|225022499|ref|ZP_03711691.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944738|gb|EEG25947.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 500

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 143/419 (34%), Gaps = 55/419 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +R+L+      R    ++    G    D E             +   +     T   
Sbjct: 10  LLFIRQLDE-----RQNELDQKKLLGVPVHDEEIIFTTEQEDLRWKNLMQIG--DPTELH 62

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             + + +  F            F      +     L+K  +  + +++        +  +
Sbjct: 63  ETMATRVFPFLKTMGTGTLAVLFRDASFGISSPSTLWKTMELINDLDIKN----RDITGD 118

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  +  +     F TP+ ++ L   L+          +P +   + DP CGT 
Sbjct: 119 LYEYMLSKLATSGTN--GQFRTPQHIIDLLVELM----------APKLGERIIDPACGTA 166

Query: 218 GFLTDAMNHVADCGSH--HKIPPILVPH-----GQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL +A   +        +        +     G + +     +      +   E   + 
Sbjct: 167 GFLINASEWMKRTYREDLYNTNERERFYRDTFTGYDFDRSMVRIAAMNSYMHGFE---KP 223

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           ++S     G         G  +   L+NPPF    + +              R  P + K
Sbjct: 224 NISYRDSLGEFPEMSGGGGDLYDVILANPPFSGSLDAE--------------RVDPVIRK 269

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           +++     L+ LA  L L    GGRAA+++    LF   +      +R+ L+EN  ++A+
Sbjct: 270 LANTKKTELLFLARFLTLLKV-GGRAAVIVPEGVLF--GSTKAHKVLRKELVENQKLDAV 326

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           + LP+ +F   + ++T +   +        G    +   D+    R+   KR  +  + 
Sbjct: 327 IKLPSGVFKPYSGVSTAVLCFTK----TDSGGTDEVWFYDMLADGRSLDDKRTPLLPEN 381


>gi|260910278|ref|ZP_05916954.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260635602|gb|EEX53616.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 505

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 154/460 (33%), Gaps = 71/460 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+               +Y A            +   +  +   E   + L      
Sbjct: 33  MFFLK------VYDTQEETWEYKASKDHKPFDSIIPEELRWRNWAIDEKDGNALTGDALL 86

Query: 96  --TRNNLESYIASFSDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               + L   + +     +           F      ++   LL ++    + IE   D 
Sbjct: 87  TFINDKLFPTLKALEVTRETPRSKAIVKEVFEDLNQYMKNGILLRQVINVINEIEFD-DA 145

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               +  +IYE +++   S  +  A +F TPR +       L          +P +  T+
Sbjct: 146 EDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------NPVLGETV 193

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESD 267
            D T GTGGFLT A+N++           +      GQE +P  + + +  +L+  +E+ 
Sbjct: 194 GDFTSGTGGFLTSALNYLQKQVQTTNAGRLYQQSVVGQEWKPLPYLLSITNLLLHDVEA- 252

Query: 268 PRRDLSKNIQQGS---TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  NI+      T   D     R +    NPP+G   +    +             
Sbjct: 253 ------PNIRHCDSLGTKMSDFKETDRVNVIAMNPPYGGSTDAAAKS------------N 294

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P   + S+ + LF++ +  +L+      GRAA+++    LF       +  I++ +L  
Sbjct: 295 FPMEFRSSETADLFMVLIMYRLKR----DGRAAVIVPDGFLFGMD--GAKLAIKQKMLRE 348

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER-----RGKVQLINATDLWTSIRNEG 438
             +  I+ LP  +F   T+IAT +   +N + +         K                 
Sbjct: 349 FNLHTIIRLPGSIFSPYTSIATNILFFNNERVDGAEEGFSTDKTWF--FRLDMPEGYKHF 406

Query: 439 KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRT 472
            K + +  +  + I D +  R+       G+ SR    + 
Sbjct: 407 SKTKSMRLEHCQPICDWWNDRKEISSDELGEKSRCFSAKE 446


>gi|295101714|emb|CBK99259.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 510

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 159/476 (33%), Gaps = 61/476 (12%)

Query: 52  RSAVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
           +SAV +        N D       ++   F          L     +  L       S +
Sbjct: 65  QSAVGQSMRWSKFKNNDPRDIFNVISQRVFPAIKNMKHGRLPDFTEQGELVEIADDSSSD 124

Query: 111 AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +    F  +  S  +  +    +L KI      +  H D     +  ++YE+++ +  +
Sbjct: 125 VQNETAFARY-MSDAMFLIPTPQVLQKIITELDDLYEH-DIADLDMQGDLYEYMLGKLAT 182

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                   F TP+ +  +   L+           P    T+ DP CGT GFL  A  ++ 
Sbjct: 183 AG--QNGQFRTPKHIREMMVELV----------QPTPDDTICDPACGTAGFLVSAAEYIR 230

Query: 229 DCGSH------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +           +        G + +     +    +++  +           I    ++
Sbjct: 231 NHYEDTMTSEQWEHFAGDAFTGFDTDRTMLRISAMNLMLHSIS-------HPEIDYKDSV 283

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           SK      +F  CL+NPPF  K   D +++    K          +       +LFL   
Sbjct: 284 SKQNQISDKFTMCLANPPF--KGTVDAESINDNLK---------AVTNTKKTELLFLALF 332

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
              L+      G+ A ++    LF   +      IR+ L+EN  + A++++P+ +F    
Sbjct: 333 LRMLK----KSGQCACIVPDGVLF--GSSKAHKAIRKELVENHQLRAVISMPSGVFKPYA 386

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV---- 457
            ++T + + +        G  + +   D+ +   +   KR  + ++    I+  +     
Sbjct: 387 GVSTAVLVFTKTGA----GGTENVWFYDMKSDGFSLDDKRSEVAENDIPDIIKRFHHLDQ 442

Query: 458 --SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI---LDKTGLARLEADITWRKLS 508
              R+  + S  +  +        +            ++    A L AD+   +L 
Sbjct: 443 EADRKRTEQSFFVPKQEIADNDYDLSINKYKKVEYVPVEYPSTAELMADLHELELE 498


>gi|328947486|ref|YP_004364823.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
 gi|328447810|gb|AEB13526.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
          Length = 500

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 170/511 (33%), Gaps = 73/511 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E       EKY +     +   ++          T +  L+        
Sbjct: 34  MLFLK-VYDAKEEDWEFEDEKYESIIPEELRWRNWAHTENQGDGLTGDKLLN-----FVN 87

Query: 98  NNLESYIASFSDN----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N L   + +   +     +       F      ++   LL +I      ++         
Sbjct: 88  NKLFPTLKNLEISPDTPIRQSIVRTTFEDANNYMKDGVLLRQIVNIIDELDFG-SYEETH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               IYE +++   S     A +F TPR V      ++           P +  T+ D  
Sbjct: 147 AFGEIYETILKELQSAG--SAGEFYTPRAVTQFMAKMI----------KPQIGETMADFA 194

Query: 214 CGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           CGTGGFL+  +  + +                    +  E +   + +CV  ML+  L+S
Sbjct: 195 CGTGGFLSSWIKELEEVKDAKGSISNEESEKIYNSIYAVEKKQFPYMLCVTNMLLHGLDS 254

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  I        D      F   L NPP+G              +  ++ +  P
Sbjct: 255 PKVYHGNSLI----YKLLDYTQKDAFDVILMNPPYGGS------------EKDDIKQNFP 298

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + S+ + LF+  +  +L+      GRAA+++    LF          +++ LL +  
Sbjct: 299 ADLRSSETADLFMAVIMYRLK----KNGRAAVIVPDGFLFGNDNAKN--NLKKKLLTDFN 352

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQL--INA---TDLWTSIRNEGKK 440
           +  IV LP  +F   T+I T +   +N   EE  GK     ++       ++  +    K
Sbjct: 353 LHTIVRLPGSVFSPYTSITTNILFFNN---EEPTGKTWFYRVDIPSDRKHFSKTKPMELK 409

Query: 441 -----------RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR-MSF 488
                      R+ I DD+       + ++E    +   D   + +   ++L     +  
Sbjct: 410 HFDDCIAWWNDRKEITDDEGNPKAKCFTAQELIDSNYNFDVCGYPHEEEEILSVAETIQN 469

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             +K      + D    +++ LHQ      L
Sbjct: 470 YEEKRSKLNADIDNLLAQITELHQKAQKGEL 500


>gi|307250669|ref|ZP_07532606.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857277|gb|EFM89396.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 489

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 158/429 (36%), Gaps = 53/429 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS----EYSLSTLGST 94
             L+ +  A E     + + Y +   + +  +++ K        T      +  + L  T
Sbjct: 34  LFLK-IYDAKEQEWELINDDYQSILPNFLRWQNWAKDNKDGKAMTGDELLNFVNNDLFPT 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                + +         +A FED +       ++   LL ++      I           
Sbjct: 93  LKNLPISAETPMNQKIIRAAFEDNN-----NYMKNGILLRQVINIIDEINF-EQYQERHA 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE++++   S  +  A +F TPR V      ++          +P +   + D  C
Sbjct: 147 FGDIYENILKSLQSAGN--AGEFYTPRAVTDFMAQMI----------APKLGERIADFAC 194

Query: 215 GTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           GTGGFLT A+  +         +       +G E +   H +C+  +L+  +++      
Sbjct: 195 GTGGFLTSALKVLEKQIQSVSDRTLFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHD 254

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +      KD     +F   L NPP+G              +  ++    P   + S
Sbjct: 255 NALEK----PVKDYTDSDKFDVILMNPPYGGS------------EIEQIKTNFPSALRSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLK----KNGRVAIVLPDGFLFGTD--NAKVAIKQKLMTEMNLHTVIR 352

Query: 393 LPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L +  + + +       +     +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL-DMPEGYKNFSKTKPMKL----EHFNE 407

Query: 452 ILDIYVSRE 460
           +++ + +R+
Sbjct: 408 VMEWWHNRQ 416


>gi|295837452|ref|ZP_06824385.1| type I restriction-modification system, M subunit [Streptomyces sp.
           SPB74]
 gi|197699692|gb|EDY46625.1| type I restriction-modification system, M subunit [Streptomyces sp.
           SPB74]
          Length = 507

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 157/461 (34%), Gaps = 75/461 (16%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   S  + +W        A  L       +  + I     ++RL+          R+ 
Sbjct: 3   TGELKSKVDRVWNAFWSGGIANPL-------EVMEQITYLLFVKRLDEI------QTRKD 49

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLST--LGSTNTRNNLESYIASFSDNAKAIFE 116
             A      D   F   AG        + +    +      + L  Y+     +A     
Sbjct: 50  RKARATGTPDPSPFF-TAGQQDLRWQNFKVKDPEIMYGIVADGLFPYLRRMGGDASTYAH 108

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                     +   GLL K+     GI +           +IYE+++ +  +        
Sbjct: 109 H--MKDARFTIPGPGLLAKVVDLLDGISMDAS----DTKGDIYEYMLAKIATSG--QNGQ 160

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------- 229
           F TPR ++ L   +            PG    + DP CGT GFL  A +++         
Sbjct: 161 FRTPRHIIDLMVEMT----------RPGPRDVICDPACGTAGFLVQAASYLRRVHREDLL 210

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              H       + HG + +     +    ML+  +E+    D+      G + + +    
Sbjct: 211 EAEHRGHFNEKMFHGFDFDTTMLRIGSMNMLLHGVEN---PDIRYRDSLGESAAGEA--- 264

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +R+   L+NPPF    + D  A + +            + +     +LFL      L+  
Sbjct: 265 ERYSLILANPPFAGSLDHDSTAADLQR-----------IARTKKTELLFLALFLRLLK-- 311

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GGRAA+++    LF   A     E+RR L+E+  ++A+V LP+ +F     ++T + 
Sbjct: 312 --SGGRAAVIVPDGVLF--GATKAHRELRRVLVEDQQLQAVVKLPSGVFKPYAGVSTAIL 367

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +          G    +   D+     +   KR  +    R
Sbjct: 368 LFQR----TDSGGTDHVWFYDVRADGLSLDDKRNDLLPADR 404


>gi|160914349|ref|ZP_02076568.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991]
 gi|158433822|gb|EDP12111.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991]
          Length = 435

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 139/415 (33%), Gaps = 55/415 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K       F      ++   LL ++      ++L  D         IYE +++   S  
Sbjct: 46  IKKSIVKTTFEDANNYMKDGVLLRQVINVIDKLDLG-DYEESHAFGEIYESILKELQSAG 104

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              + +F TPR V      ++           P +  T+ D  CGTGGFLT  +  + + 
Sbjct: 105 --SSGEFYTPRAVTDFMAKMI----------EPKIGETMADFACGTGGFLTSWIKELENK 152

Query: 231 GSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              ++         +G E +   + +C+  ML+  +  D  R    N      L  D   
Sbjct: 153 IQTNEDRRKFDSSIYGIEKKQFPYMLCITNMLLHGI--DIPRIEHDNSLLYDVL--DYTD 208

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   L NPP+G   + D                 P     S+ + LF+  +  +L+ 
Sbjct: 209 DDKFDVILMNPPYGGNEKSDVK------------NHFPSDLASSETADLFMSVIMYRLK- 255

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR A++L    LF     + +  I++ LL    +  IV +P  +F   T+I T +
Sbjct: 256 ---ENGRVAVILPDGFLFGTD--NAKVSIKKKLLNEFNLHTIVRMPHSVFSPYTSITTNI 310

Query: 408 WILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSREN----- 461
                       GK +      L          K + +  +     +  + +RE      
Sbjct: 311 LFFDK------TGKTKETWFYRLDMPEGYKNFSKTKPMKLEHFDPAIKWWNNREEISIDG 364

Query: 462 ----GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                K+S+  +     Y       P     IL    L +   +      + + +
Sbjct: 365 FDKAKKYSK-AELEEKNYNLDLCGYPHEEEEILPPKDLIKEYQEKRKSLNADIDR 418


>gi|187939950|gb|ACD39086.1| type I restriction-modification system methyltransferase subunit
           [Pseudomonas aeruginosa]
          Length = 527

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 166/451 (36%), Gaps = 96/451 (21%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                   ++   +L    +  + + L        V  +IYE+L+ +  +        F 
Sbjct: 119 YMQDADLEIKNESVLTSAVEMVNELPLT----QSDVKGDIYEYLLSKLTTAGIN--GQFR 172

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---------- 228
           TPR ++     L+          +P     + DP CGT GFL   M ++           
Sbjct: 173 TPRHIIDAMIELI----------APQPTEVICDPACGTAGFLARTMEYLNRVHSSPEGTF 222

Query: 229 --DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRLESDPRR---DLS 273
             + G+ H    +L P+          G + +     V    M++  +     R    LS
Sbjct: 223 SDEDGNRHYSGDLLEPYRQHINSQMFWGFDFDTTMLRVSSMNMMLHGVNGANIRYQDSLS 282

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           K+I++     +  F    F   L+NPPF       K ++++ + N ++     GL K   
Sbjct: 283 KSIKEHYPRQEQNF----FDVVLANPPF-------KGSLDETNTNPDV----LGLVKTKK 327

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+ H+   L+L    GGR+A+++    +F   +     ++R+ LL+N+ +E IV+L
Sbjct: 328 TELLFVAHILRSLKL----GGRSAVIVPDGVVF--GSSKAHQQLRQELLDNNQLEGIVSL 381

Query: 394 PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN------- 445
           P+ +F     ++T + I +   T ER      +   DL     +   KR  +        
Sbjct: 382 PSGVFKPYAGVSTAILIFTKGGTTER------VWFYDLQADGYSLDDKRTELKGEGCNDL 435

Query: 446 DDQRRQ----------------ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
            D   Q                I  ++  +    F   ++        + + R   + + 
Sbjct: 436 PDAIAQWRKYRQMVEGNISASTINTLFGDKRKKAFVVPVEEIVANKYDLSINRYKEVEYQ 495

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            ++    ++      ++L  L Q    D+ +
Sbjct: 496 QEQYEEPKV----ILKRLKGLEQEILADLDE 522


>gi|253689249|ref|YP_003018439.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755827|gb|ACT13903.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 544

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 166/464 (35%), Gaps = 75/464 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKSLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRDHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  +++    +   F+  L+NPPF          +++E  +  L        
Sbjct: 278 IHYQDTMSQSFSINFPQASKNAFNLILANPPFTGS-------LDEEDIDPSL----LATV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL+ +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLVRILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +V LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VVNLPSGVFKPYAGVATAILIFTKG------GQTDNVWFYDLQNDGYSLDDKRNQIKDND 434

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR---PLRMSFILDKTGLARLEADITWR 505
              ++  +      K   ++     G + I +L    P   S   D     +    +   
Sbjct: 435 LPHLIASWKCYRQSKG--LVTDNFIGNKFISLLEQQYPKEGSITTDYLDRTQSAFIVPKT 492

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            ++  +    ++  K ++ +   +   +  +K  +K  E K L 
Sbjct: 493 NIAAENYDLSVNRYKKVVYETEQHEDPKVILKR-LKELEKKILD 535


>gi|315187185|gb|EFU20942.1| N-6 DNA methylase [Spirochaeta thermophila DSM 6578]
          Length = 552

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 96/502 (19%), Positives = 169/502 (33%), Gaps = 95/502 (18%)

Query: 5   TGSAASLANFIWKNAEDLWGD-FKHTD-FGKVILPFTLLRRLECALEPTRSAV----REK 58
           T         +W+ A     D    T+      L F  L+  +        A+     ++
Sbjct: 4   TPDFNQFGEELWEIANVFRDDALHATERLETFSL-FLFLKLWDEMALEQEEALGRSLNDE 62

Query: 59  YLA------FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            LA      F     D + + K  G  F ++ ++         TR  ++ Y    + + +
Sbjct: 63  ELAIPNKYRFHKWASDPDGYAKQHG--FEDSVDFCRRMFDDLATRKVVDQYGKDITFDVR 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------RVMSNIYEHLIR 164
            +F       T+ RL     +  +    + + L    +           +    YE+L++
Sbjct: 121 RLF-----GGTVFRLRYTTTIRALVSKLNELNLREIMMRGVGEPGERYDIFGRAYEYLLQ 175

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +FG   ++   ++ TPR +V     ++           P +  T+YDP CGTGGF+  A 
Sbjct: 176 KFGQ--NKEFAEYFTPRHIVDRMVQII----------DPEIGETIYDPACGTGGFIVRAF 223

Query: 225 NHVADCGSHH-----------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             V                  +        G E  P    + +  M++        +D S
Sbjct: 224 EWVRAKIERKTISAAEKERLLRNLKEKHLIGVEHVPIVFKLALMNMILH-------KDGS 276

Query: 274 KNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +Q   +LS    D+    ++   L+NPPFG                 +  R       
Sbjct: 277 SLLQNDDSLSNKAQDIHKN-KYDVILANPPFGPT---------------KQERLAQFEYH 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           I     LF+ H+ N L      GGRAA+VL    LF   +      I R L+E   + A+
Sbjct: 321 IKLYEALFIQHMMNALRP----GGRAAVVLKEGLLF--DSKKMLRAICRKLVEQFEVLAV 374

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEE--RRGKVQLI----NATDLWTSIRNEGKKRRI 443
           ++LP  +F   +   T + +       +  R  KV       +  DL  + R        
Sbjct: 375 ISLPNGVFNPYSGAKTSIVVFRKPLGRDDVRTSKVWFYRVESDGRDLGATRRPLPD---F 431

Query: 444 INDDQRRQILDI--YVSRENGK 463
             D     ++ +  Y  R    
Sbjct: 432 ETDGDLEHMVSLFPYTWRHEKD 453


>gi|290474453|ref|YP_003467333.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii
           SS-2004]
 gi|289173766|emb|CBJ80546.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii
           SS-2004]
          Length = 534

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 167/454 (36%), Gaps = 94/454 (20%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                   ++   +L    +    + L        V  +IYE+L+ +  +        F 
Sbjct: 126 YMQDADLEIKNESVLVSAVEMVDELPLT----QSDVKGDIYEYLLSKLTTAGIN--GQFR 179

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---------- 228
           TPR ++     L+          +P    T+ DP CGT GFLT  M ++           
Sbjct: 180 TPRHIIDAMIELI----------NPQPTDTVCDPACGTAGFLTRIMEYLNRVHSSEFGIL 229

Query: 229 --DCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRLESDP---RRDLS 273
             D G+ H    +L P+          G + +     V    M +  +       +  LS
Sbjct: 230 EDDDGNKHYTGDLLEPYRDHINKKMFWGFDFDTTMLRVSSMNMALHGVNGANILYQDSLS 289

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           K+I++     ++ F    F   L+NPPF       K ++++ + N ++     GL K   
Sbjct: 290 KSIKENFPQQEENF----FDVILANPPF-------KGSLDETNTNPDV----LGLVKTKK 334

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+ H+   L+L    GGRAA+++    LF   +     ++R+ L+EN+ +E IV+L
Sbjct: 335 TELLFVAHILRALKL----GGRAAVIVPDGVLF--GSSKAHQQLRQELIENNQLEGIVSL 388

Query: 394 PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN------- 445
           P+ +F   T ++T + + +   + ER      +   DL T   +   KR  +        
Sbjct: 389 PSGVFKPYTGVSTAILMFTKGGSTER------VWFYDLQTDSYSLDDKRTPLKGEGSNDL 442

Query: 446 DDQRRQ----------------ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
            +   +                I   +  +    F  ++D +     +  +        +
Sbjct: 443 PEAIAKWKQYIALVERNALAKDINKAFGDKTQKAF--VVDAKDIVDNKFDLSINRYKEVV 500

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            ++      +  +   K         LD L+ M+
Sbjct: 501 YEEEAFEDPKTILNKLKTLESEIMADLDALEGML 534


>gi|328947974|ref|YP_004365311.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
 gi|328448298|gb|AEB14014.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
          Length = 508

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/506 (15%), Positives = 178/506 (35%), Gaps = 80/506 (15%)

Query: 35  ILPFTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDL---ESFVK---------VAGYS 79
           I     ++ L+     +E   +++    +     + DL   + F            A   
Sbjct: 32  ITYLIFIKMLDDNQIKIERKINSLVAAGVEVNLEDYDLIFKDGFYIDEEDKINCSYADLR 91

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           +   S +  +     N +NN+  +I +   +    F  +        +    +L K+ + 
Sbjct: 92  WSVFSTWGDNGKKFDNLKNNVFPFIKNLHGDKVTSFAKY-MEKAEFAISNPYILGKMIEA 150

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            S  +L  +     +M + YE+L+ +  +        F TPR ++ +   +         
Sbjct: 151 LSDPDLGFN--KTDIMGDCYEYLLSKMATSG--DNGQFRTPRHIIDMMVEIA-------- 198

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETH 252
              PG+  T+ DP  GT GFL+++  ++ +         ++++     +  G + + +  
Sbjct: 199 --KPGLTDTIIDPAMGTAGFLSESAKYIKEHFAKELTNKTNNQHFHNKMFTGFDTDTDML 256

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M +  +E       +  I+  ++L +D          L+NPPF    +    A 
Sbjct: 257 RIGCMNMTLHGVE-------NPVIKYNNSLGEDYEEKDSHTLILANPPFSGSLDPSTVAK 309

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                +G                +LFL      L+     GGR   ++    L N     
Sbjct: 310 SLNQISG----------GTKKTELLFLSLFLRLLKT----GGRCVSIIPVGVL-NNTNDK 354

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             +++R+ L+EN  +E ++ +P  +F+  + + T + I +        G    +   ++ 
Sbjct: 355 AYTKLRKELVENQKLEGVIFMPGGVFYPYSGVQTGILIFTK----TNAGGTDKVWMYNME 410

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSR----ENGKFSR--------MLDYRT----FGY 475
               +  +KR  I  +    I++ + +R    E   + +        ++D         Y
Sbjct: 411 NDGYSLDQKRDAIEANDIPDIINRWNNRDKEAERTHYEKSFLVDKQEIVDNDYVFSFNKY 470

Query: 476 RRIKVLRPLRMSFILDKTGLARLEAD 501
           ++ +V +            +  LE  
Sbjct: 471 QKKEVEKKEYRPVKEIFASINELEKQ 496


>gi|218679450|ref|ZP_03527347.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium
           etli CIAT 894]
          Length = 120

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/120 (45%), Positives = 75/120 (62%)

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
                A ++A   +D  A    D +G   PD  L ++E VP  E  + Y  REV+P VPD
Sbjct: 1   APVRKAILSALSERDESAAICLDGDGRPEPDPELRDHELVPLKEDWKSYVAREVTPFVPD 60

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           A++D+ + D+ DK +GRVGYEINFNR+FY+Y   R L +IDAELK +E  IA LL+E+A 
Sbjct: 61  AWVDETYRDDADKGVGRVGYEINFNRYFYRYVAPRPLAEIDAELKTLETDIADLLKEVAG 120


>gi|317485044|ref|ZP_07943926.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923579|gb|EFV44783.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 486

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 153/425 (36%), Gaps = 56/425 (13%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASF------------S 108
           +     D E+          +   +   +  G     ++L  ++                
Sbjct: 39  YDDREYDWEALEHDYVSIIPDPCRWRNWADTGKALKGDDLIRFVDGMLLPTLKDLPIPPG 98

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              +       F+     ++    L ++    +  + + D        +IYE +++   S
Sbjct: 99  CPLRKSIVKTVFTDIHNFMKDGVQLRQLLTEINECDFN-DPQEAHAFGSIYESILKLLQS 157

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                + +F TPR +       +             +   + D  CGTGGFL  A   + 
Sbjct: 158 AG--SSGEFYTPRALTDFMARHV----------GLKLGDKVADFACGTGGFLNSARAWLE 205

Query: 229 DCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                +    IL    HG E +P  + +CV  +L+  ++    R  +   +     + D 
Sbjct: 206 GQAKTNAQREILARSFHGTEKKPLPYLLCVTNLLLNGVDEPLIRYGNSLTK----STGDY 261

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +F   L NPP+G              +   + +  P   + ++ + LFL+ +  +L
Sbjct: 262 TEADKFDVVLMNPPYGGS------------EQLTIQQNFPSNMRSAETADLFLILIMARL 309

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
           +      GRAA+V+    LF    G  ++EI+R LL N  +  IV LPT +F   T+IAT
Sbjct: 310 KA----TGRAAVVIPDGFLF---GGGNKTEIKRELLSNFNLHTIVRLPTSVFSPYTSIAT 362

Query: 406 YLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIINDD--QRRQILDIYVSREN 461
            +         +     +V +      ++  +    +     D    +R+ L++  S + 
Sbjct: 363 NVLFFDGNGPTKETWFYRVDMPEGYKHFSKTKPMLLEHLADLDAWWDKREPLEVNGSDKA 422

Query: 462 GKFSR 466
            K+S+
Sbjct: 423 RKYSK 427


>gi|293570791|ref|ZP_06681840.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E980]
 gi|291609144|gb|EFF38417.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E980]
          Length = 489

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 167/489 (34%), Gaps = 72/489 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E T   + + Y +     +    +          T +  L         N
Sbjct: 34  LFLK-IYDAKEETWELLNDNYTSIIPEGLKWRDWAVDRKDGEALTGDALL-----DFVNN 87

Query: 99  NLESYIASFSDN----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            L   + +   +       +   + F       +   LL ++      I+   +      
Sbjct: 88  TLFPTLKNLEIDETTPMSQVIVRYAFEDANNYQKDGVLLRQVVNIIDEIDFT-EYKERHE 146

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              IYE  ++   S  +  A +F TPR V       +           P +   + D  C
Sbjct: 147 FGAIYESFLKDLQSAGN--AGEFYTPRAVTDFMVKAV----------KPVLGDKIGDFAC 194

Query: 215 GTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GTGGFLT A+N +         ++       +G E +   H +CV  MLI  ++      
Sbjct: 195 GTGGFLTSALNELDKQVGNSLENREIYNKSVYGIEKKSLPHMLCVTNMLIHDIDD----- 249

Query: 272 LSKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              NI  G+ L  D    ++   F   L NPP+G              +   +    P  
Sbjct: 250 --PNILHGNALETDYKELRKMEPFDVVLMNPPYGGS------------EKDSVKVNFPTE 295

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            + S+ + LF+  +  +L+      GRAA++L    LF    G     I++ L     + 
Sbjct: 296 LRSSETADLFMNVIMYRLK----KNGRAAVILPDGFLFGTDNGKF--NIKKKLFSEFNLH 349

Query: 389 AIVALPTDLFF-RTNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIIN 445
            +V +P  +F   T I T +    N +  +     +V +      ++  R    K    N
Sbjct: 350 TVVRMPHSVFAPYTPIRTNILFFDNTEPTKETWFYRVDMPEGYKNFSKTR--PMKLEHFN 407

Query: 446 D-----DQRRQI-------LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           D     + R +I          Y+  E  + S  +D   F +    +L P+ +     + 
Sbjct: 408 DALNWWENREEIEVDGFPKAKRYMIDEIIERSYNIDLCGFPHEEEVILEPMDL-IQEYQE 466

Query: 494 GLARLEADI 502
             A L A+I
Sbjct: 467 KRASLNAEI 475


>gi|330907935|gb|EGH36454.1| type 1 restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli AA86]
          Length = 544

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 155/451 (34%), Gaps = 75/451 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I      R L+     T+    EK     G +       +   + F + S      +   
Sbjct: 32  ITYLMYSRMLD-----TQEQHDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEV 86

Query: 95  NTRNNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                 + +     +D +K              + K  LL K  +    + L        
Sbjct: 87  VRDGVFQHFRQLGQADASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLD----RGD 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE+L+ +  +        F TPR ++     ++        + +P    T+ DP 
Sbjct: 143 TKGDLYEYLLSKLATAGIN--GQFRTPRHIIRTMVEMM--------EPNPARGETICDPA 192

Query: 214 CGTGGFLTDAMNHVADCGS------------------------------HHKIPPILVPH 243
           CGTGGFL  +  ++ +  S                                      + H
Sbjct: 193 CGTGGFLATSYEYLLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFH 252

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G + +     +    +++  +E+ P       + Q  + +    +   F+  L+NPPF  
Sbjct: 253 GYDFDTTMLRIAAMNLIMHGVEA-PDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTG 311

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   +++E  +  L      + K     +LFL  +   L++    GGR+A ++   
Sbjct: 312 S-------LDEEDIDSTLS----AMVKTKKTELLFLARILQMLKV----GGRSATIVPQG 356

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKV 422
            LF   +      +R+ L+E++ +EA++ LP+ +F     +AT + I +        G+ 
Sbjct: 357 VLF--GSSKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG------GQT 408

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +   DL     +   KR  I D+    +L
Sbjct: 409 DEVWFYDLQNDGYSLDDKRNPIKDNDLPHLL 439


>gi|300702437|ref|YP_003744037.1| type I restriction enzyme (hsdm) [Ralstonia solanacearum CFBP2957]
 gi|299070098|emb|CBJ41385.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           CFBP2957]
          Length = 481

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 120/364 (32%), Gaps = 56/364 (15%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           +         +           +D  F+     L    LL K+ +    I LH       
Sbjct: 92  SAHGIPFLRALGDKDPVCGRHLQDIRFT-----LPTPALLDKVVQQLDAIPLH----RRD 142

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V   +Y+ L+ R           F TPR +V    AL            P    TL DP 
Sbjct: 143 VRGAVYDALLGRIPQAG--QGGQFHTPRHIVRFMVALT----------RPAPSDTLCDPA 190

Query: 214 CGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            GTGGFL  A  ++                    + HG E++     +    +L+  +E 
Sbjct: 191 AGTGGFLAAAGEYLRREHPGLLHDTQQAAHFHHGMFHGYEIDRTMLRIGSMNLLLHGVEG 250

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              RD        +    D      +   L++PPF    +      +  H+         
Sbjct: 251 PNLRD------HDALAPTDTNEAGAYSLVLAHPPFTGDVDHGSVDPDLLHR--------- 295

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              +     +LFL    + L      GGRAA+++    LF   +G     +RR L+EN  
Sbjct: 296 --VRTRKAELLFLARCLHLLRP----GGRAAVIVPDGVLF--GSGIAHRTLRRMLVENHQ 347

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +E ++ LP  +F     I T + + +   T    G    +   DL     +    R  + 
Sbjct: 348 LEGVIKLPAGVFRPYAGIGTAILLFTRTDT----GGTGHVWFYDLRADGFSLDAPRTPLL 403

Query: 446 DDQR 449
            D R
Sbjct: 404 PDDR 407


>gi|260592886|ref|ZP_05858344.1| type I restriction-modification system, M subunit [Prevotella
           veroralis F0319]
 gi|260535175|gb|EEX17792.1| type I restriction-modification system, M subunit [Prevotella
           veroralis F0319]
          Length = 508

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/440 (19%), Positives = 156/440 (35%), Gaps = 59/440 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++    + IE   D     +  +IYE +++   S  +  A +F T
Sbjct: 117 FEDLNQYMKNGILLRQVVNVINEIEFD-DATDRHMFGDIYEGILKDLQSAGN--AGEFYT 173

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR +       L          SP +  T+ D T GTGGFLT A+N++           +
Sbjct: 174 PRALTDFIIQQL----------SPVLGETVGDFTSGTGGFLTSALNYLQKQVKTTDDRRL 223

Query: 240 LVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTGKRFHY 294
                 G E +P  + + +  +L+  +ES        NI+      T   D   G + + 
Sbjct: 224 FQKAVIGHEWKPLPYLLSITNLLLHDVES-------PNIRHCDSLGTKMSDFKEGDKVNV 276

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
              NPP+G   +    +              P   + S+ + LF++ +  +L+      G
Sbjct: 277 IAMNPPYGGSTDAASKS------------NFPMEFRSSETADLFMVLIMYRLKA----NG 320

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413
           RAA+++    LF       +  I++ +L +  +  I+ LP  +F   T+IAT +   +N 
Sbjct: 321 RAAVIVPDGFLFGTD--GAKLAIKQKMLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNE 378

Query: 414 KTEER-----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           + E         K                  K + +  +  + I D +  R+        
Sbjct: 379 RAEGADEGFSTNKTWF--YRLDMPEGYKHFSKTKSMRLEHCQPICDWWNDRKEIAS---- 432

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D      R         + F  D+    + E +I    L P        + +  +     
Sbjct: 433 DELGEKARCFTAKELAELDFNFDQCKFPKDEEEI----LPPAELLANYFMKRKALDDEID 488

Query: 529 YGWAESFVKESIKSNEAKTL 548
              AE      I+ N  K L
Sbjct: 489 KTLAEIQKILGIEINIDKQL 508


>gi|315154176|gb|EFT98192.1| N-6 DNA Methylase [Enterococcus faecalis TX0031]
          Length = 411

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 148/416 (35%), Gaps = 56/416 (13%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+    + K+ + F  IE       D      +E+          +  +   TP  V  +
Sbjct: 28  LKNKDAVRKLFEKFLAIE------TDLSFDWFHEYFQEEHAD--RKQKKQDFTPNSVGKV 79

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            + +L                +  D   GTGG          D       P       +E
Sbjct: 80  LSLILGH------------SESTLDVAAGTGGLTIK--KWWND-----GQPTNNEYLCEE 120

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLS---------KNIQQGSTLSKDLFTGKRFHYCLS 297
           L        +  ++IR +++      S         K      T   +    ++    +S
Sbjct: 121 LSDRAVPFLLFNLMIRGMKAQVIHGDSLSGVTKKVYKISDYELTEINEELAIEKVGAVIS 180

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  KW+     ++    +     +   L   +     FL+H   +L+      G  A
Sbjct: 181 NPPYSAKWDASPTLLD----DPRFSHYEK-LAPKTKADFAFLLHGFYRLK----DSGTMA 231

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E  IR+ LLE+  I+A++ LP +LFF T+I T + +L   +   
Sbjct: 232 VVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGLPANLFFGTSIPTVIIVLKKNR--- 285

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476
           +   V  I+++  +   +N    +  ++DD   +I+  Y  R++  K++ +  Y      
Sbjct: 286 QTRDVMFIDSSKEFDKGKN----QNSLSDDHINKIIHTYKERKDIEKYAHLASYDEITEN 341

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +  P  +    ++  +   E     RK +        +++  + + +     +
Sbjct: 342 DFNLNIPRFVDTFEEEEPINPFELLADIRKTNEELAKAEKELVSMLDELVVDTDES 397


>gi|269966770|ref|ZP_06180845.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828630|gb|EEZ82889.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 452

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 136/374 (36%), Gaps = 60/374 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
               I  +  A LL ++ +  S I+++          ++YE+L+ +           F T
Sbjct: 26  MKDAIFMIPSAKLLDQVVQLLSAIDMN----DKDTKGDLYEYLLSKLQQSGVN--GQFRT 79

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------S 232
           PR+++ +   L+           P +  T+ DP+ GT GFL  A+ +V +          
Sbjct: 80  PRNIIQMMVELM----------QPKVGDTICDPSSGTCGFLMAAVEYVEEHHAKEVNKPD 129

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           + K     +  G + +     +    ML+  +E+           QG     +      +
Sbjct: 130 NRKHFNNEMFTGFDFDKHMLRIGAMNMLLHGIENPSVHYRDSLQDQGDENISEA-----Y 184

Query: 293 HYCLSNPPFGKKWEKD---------------------KDAVEKEHKNGELGRFGPGLPKI 331
           +  L+NPPF    + D                     K   E +    E+          
Sbjct: 185 NLILANPPFKGSVDFDIVAPDLLRALGKNPVVKKTAPKFKTEIDEDGNEVQVEVKKKKPT 244

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               +LFL  +   L++    GGRAA+++    LF   +      IR+ ++++  +EA++
Sbjct: 245 EKSELLFLALILRMLKV----GGRAAVIIPDGVLF--GSTKAHKTIRQKIVQDQKLEAVI 298

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI---RNEGKKRRIINDD 447
           +LP+ +F     ++T + I +   +      V   +      S+   R +  K       
Sbjct: 299 SLPSGVFKPYAGVSTAILIFTKTNSGG-TDNVWFYDMQADGYSLDDKRTQLFKDGETATH 357

Query: 448 QRRQILDIYVSREN 461
           ++  I DI    + 
Sbjct: 358 EQSNIADIIARFKT 371


>gi|198277094|ref|ZP_03209625.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135]
 gi|198269592|gb|EDY93862.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135]
          Length = 502

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 167/481 (34%), Gaps = 52/481 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E T     EKY +    ++   ++          T E  LS +      
Sbjct: 33  MFFLK-VYDTQEETWEWKDEKYKSIIPEDLRWRNWAIDKKDGKALTGEALLSFVNEKLFP 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 I + +  AK+I ++  F+     ++   LL ++    + IE   D        +
Sbjct: 92  TLKNLPIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEFD-DADDRHTFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR +      +L           P +  T  D T GTG
Sbjct: 150 IYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+ H+            L     GQE +P  + + +  +L+  +E+    +    
Sbjct: 198 GFLTSALKHMGRNIGSAADGEKLQNAVVGQEWKPLPYLLSITNLLLHDIEAPNITNCDSL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                T   D     +      NPP+G   E    +              P   + S+ +
Sbjct: 258 G----TNVTDFKESDKVDVIGMNPPYGGSTEDSVKS------------NFPVQYRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+     GGR  +++    LF       +  ++  LL    +  I+ LP 
Sbjct: 302 DLFIALIMYRLKA----GGRCGVIIPDGFLFGTD--GAKLALKENLLRKFNLHTIIRLPG 355

Query: 396 DLFF-RTNIATYLWILSNRKTE--ERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQ 451
            +F   T+IAT +   +N + E  E   K +      L          K + +  +    
Sbjct: 356 SIFSPYTSIATNILFFNNEEAEGCEEGFKTKETWFYRLDMPEGYKHFSKTKPMKVEHTLP 415

Query: 452 ILDIYVSREN------GKFSRMLDYRTFGYRRIKVLR---PLRMSFILDKTGLARLEADI 502
           I + +  R+       G+ SR+   +          +   P     IL    L +   + 
Sbjct: 416 IQEWWKDRKEIISDEVGEKSRVFTAQQLIDLDCNFDQCKFPKEEEEILPPAELLKQYFEK 475

Query: 503 T 503
            
Sbjct: 476 R 476


>gi|257784006|ref|YP_003179223.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
 gi|257472513|gb|ACV50632.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
          Length = 506

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 172/510 (33%), Gaps = 107/510 (20%)

Query: 38  FTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGS 93
              +R L+   LE  R                +E       Y F  TSE       ++ +
Sbjct: 35  LMFIRSLDDKELESER----------------MEELGIPQEYLFPQTSEGQEMRWCSIKN 78

Query: 94  -------TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                     R+ +  +I +  D+    F           +     L K       + ++
Sbjct: 79  MAPEKMLEAIRDKVFPFIKTLHDDTP--FAR-SMRDATFGINNPRTLQKAVSGIDSL-MN 134

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   + ++YE+++ +  +  +     F TP+ +  +  A++           P   
Sbjct: 135 DFENDMDDLGDLYEYMLSKLSTAGTN--GQFRTPKHIRDMMVAMV----------DPRPG 182

Query: 207 RTLYDPTCGTGGFLTDAMNHV--------------------ADCGSHHKIPPILVPHGQE 246
             + DP  GT GFL  A +H+                     D   +          G E
Sbjct: 183 ERICDPAMGTAGFLISAADHLRNDSAMKDDDWTVFAGEAAEKDADGNVVAEGRHQFSGGE 242

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +     +    +++  +          +I+   ++SK   T  ++   L+NPPF     
Sbjct: 243 TDQTMFRISAMNLMLHGIS-------QPDIKLVDSVSKQNTTSDKYDLVLANPPFTGS-- 293

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V+ E     L      +       +LF+      L++    GGR A ++ +  LF
Sbjct: 294 -----VDTEDIAPSL----KAICNSKQTELLFVALFLRMLKV----GGRCACIVPNGVLF 340

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLI 425
              +     ++R+ L++N  + AI+ +P+ +F   + ++T + + +         KV L 
Sbjct: 341 RTNS-KAYRQLRQELVDNQQLRAIIYMPSGVFKPYSGVSTAVLVFTKT-NAGGTDKVWLY 398

Query: 426 NATDLWTSIRNEGKKRRIINDDQRR--QILDIYVSRENGK----------FSR--MLDYR 471
           N      ++ ++    R I+D       IL+ +   E+ +           S+  ++D  
Sbjct: 399 NMEGDGYTLDDK----RDIDDAHNDVPDILERWAHLESEEKRDRKQKSFLVSKQDIIDND 454

Query: 472 T-FGYRRIKVLRPLRMSFILDKTGLARLEA 500
             F + +       R+ +   +  +A L+ 
Sbjct: 455 YDFSFNKYVETEYERIEYPPTEQIVAELDE 484


>gi|114566063|ref|YP_753217.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336998|gb|ABI67846.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 489

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/491 (14%), Positives = 160/491 (32%), Gaps = 69/491 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +R L+   E    +V              +   +   +S + T +            
Sbjct: 35  LMFIRSLDEK-ELEMESVEALSGEEMPKIFPQDKAGQDMRWSKFKTKDSRAIY---DIVG 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           + +  +I + +    + F  +     +  +    +L KI      +  H D     +  +
Sbjct: 91  SKVFPFIKAMNGKNTSAFSRY-MQDAMFLIPTPQVLQKIITGLDELYEH-DIKDLDMQGD 148

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  +        F TP+ +  +   LL           P     + DP CGT 
Sbjct: 149 VYEYMLGKLSTAG--QNGQFRTPKQIRDMMVRLL----------DPAPDNKVCDPACGTA 196

Query: 218 GFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GFL     ++ +       P         +  G + +     +    +++  +       
Sbjct: 197 GFLVSIAEYIREKYETEMTPEQWEHFGGAMFTGFDTDRTMLRISAMNLMLHSI------- 249

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               I+   ++SK       +   L+NPPF      D +++    K          +   
Sbjct: 250 TQPRIEYVDSVSKQNSISSAYDIILANPPFTGTI--DTESINDNLK---------AVCSS 298

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               +LF+      L      GGR + ++    LF          +R+ L+EN  ++ ++
Sbjct: 299 KKTELLFVALFLRMLR----KGGRCSCIVPDGVLF--GTTRAHKALRKELVENHQLQTVI 352

Query: 392 ALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++P+ +F     ++T + + +        G    +   D+     +   KR  I D+   
Sbjct: 353 SMPSGVFKPYAGVSTAILVFTKTGA----GGTDKVWFYDMRADGYSLDDKRTPIEDNDIP 408

Query: 451 QILDIYVSRENG------------KFSRMLDYRT----FGYRRIKVLRPLRMSFILDKTG 494
            I+  + + E              + S ++          Y+ I   + +  +  +    
Sbjct: 409 DIIARFHNPEGEADRKPTEQSFFVEKSAIVANDYDLSINRYKEIVYEKVVYDAPAVIMDR 468

Query: 495 LARLEADITWR 505
           L +L  DI  +
Sbjct: 469 LDKLNLDIAAK 479


>gi|119356950|ref|YP_911594.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354299|gb|ABL65170.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 553

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/510 (15%), Positives = 171/510 (33%), Gaps = 103/510 (20%)

Query: 35  ILPFTLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNT--SEYSLS 89
           I     ++R++   +  +++     E Y +        + +   +    Y    S    S
Sbjct: 34  ITYLLFMKRMDDQDQEKQASAEWAGETYTSKFKGVWIPQEYRGKSNSFNYAIDKSTLRWS 93

Query: 90  TLGS-------TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                      T+ +  +  Y+   +  A++ F      + +  + K  LL +  K    
Sbjct: 94  EFKHMQAEEMLTHVQTKVFPYLKDLNG-AESQFSH-HMKNAVFIIPKPSLLVEAVKTVDE 151

Query: 143 IELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +   +        +  ++YE L+    S        F TPR ++ +   L+    
Sbjct: 152 IFEVMEKDSNEKGQAFQDIQGDVYEFLLSEIASAG--KNGQFRTPRHIIKMMADLV---- 205

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------AD 229
                  P +  T+ DP CGTGGFL  A  ++                          A 
Sbjct: 206 ------EPKLGHTIADPACGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSAG 259

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K        G +++     + +  +++  ++          I    TLSK     
Sbjct: 260 LTEQAKNILGRTLFGYDIDSTMVRLALMNLMMHGID-------EPEIDYKDTLSKSFTEE 312

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   ++NPPF          ++K   N             +   +LF+ ++   L+  
Sbjct: 313 SCYDIIMANPPFTGS-------IDKSDINESF------TLSTTKTELLFVENIYRLLK-- 357

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GG A +++    LF   +G     +R+ L+E   ++A++ +P+ +F     ++T + 
Sbjct: 358 --KGGTACVIVPQGVLF--GSGGAFKALRKLLVERCDLKAVITMPSGVFKPYAGVSTSIL 413

Query: 409 ILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--- 459
           + +       + T+    +V   +      S+ ++  K+    D     I++ Y  R   
Sbjct: 414 LFTKVWGPLDKVTKPATEQVWFYDMQSDGYSLDDKRSKQDGFGD--LLDIVEKYKQRSVE 471

Query: 460 -ENGKFSRML-----DYRTFGYRRIKVLRP 483
            +  +  +       +  + G   + + R 
Sbjct: 472 HDTDRTRKFFFVPRSEIESEGGYDLSLSRY 501


>gi|60680961|ref|YP_211105.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC
           9343]
 gi|60492395|emb|CAH07164.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC
           9343]
          Length = 506

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 160/480 (33%), Gaps = 61/480 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+               +Y A   S        K   +  +   E     L      
Sbjct: 33  MIFLK------VYDTQEETWEYKASRESKTYQSIIPKDLRWRNWAVDEKDGEALTGEALL 86

Query: 96  --TRNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L   + +   +A            F+     ++   LL ++    + IE   D 
Sbjct: 87  SFVNEKLFPALKNLPVDANTPRAKSIVQETFADLNQYMKNGTLLRQVVNIVNEIEFD-DA 145

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  +IYE +++   S  +  A +F TPR +      +L           P +  T 
Sbjct: 146 DDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETF 193

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESD 267
            D T GTGGFLT A+N++       +    L     GQE +P  + + +  +L+  +E+ 
Sbjct: 194 GDFTSGTGGFLTSALNYMGKSVRSAEDGEKLQNAVVGQEWKPLPYLLSITNLLLHDIEAP 253

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +         T   D     +      NPP+G   E              +    P 
Sbjct: 254 NIANCDSLG----TNVTDFKETDKVDVIGMNPPYGGSTE------------DSVKNNFPL 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + S+ + LF+  +  +L+     GGR  +++    LF       +  ++  LL    +
Sbjct: 298 RYRSSETADLFIALIMYRLKA----GGRCGVIIPDGFLFGTD--GAKLALKENLLRKFNL 351

Query: 388 EAIVALPTDLFF-RTNIATYLWILSNRKTE--ERRGKVQLINATDL-WTSIRNEGKKRRI 443
             I+ LP  +F   T+IAT +   +N + E  E   K +      L          K + 
Sbjct: 352 HTIIRLPGSIFSPYTSIATNILFFNNEEAEGCEEGFKTKETWFYRLDMPEGYKHFSKNKP 411

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADI 502
           +  +    I + +  R+      ++   T    R+    + L ++   D+    + E +I
Sbjct: 412 MKVEHTLPIQEWWNDRKE-----IVSSETGEKSRVFTAQQLLDLNCNFDQCKFPKEEEEI 466


>gi|110834691|ref|YP_693550.1| type I restriction-modification system, M subunit [Alcanivorax
           borkumensis SK2]
 gi|110647802|emb|CAL17278.1| type I restriction-modification system, M subunit [Alcanivorax
           borkumensis SK2]
          Length = 533

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 168/467 (35%), Gaps = 92/467 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNT 96
               R L+      +  V E+  A      D        G      +  +LS      + 
Sbjct: 35  LMFARMLD-----MQEEVAERKAARSKKEFDRLFPNTPEGQLLRWKNFKNLSGKELHKHL 89

Query: 97  RNNLESYIASFSDNAKAI-----------FEDF--DFSSTIARLEKAGLLYKICKNFSGI 143
           +N +  Y AS   +A+                           ++   +L    +    +
Sbjct: 90  KNAVYPYFASLGQHAEEEGLGSEGSATQALGHIGEYMQDADLEIKNESVLVSAVEMVDNL 149

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L        V  +IYE+L+ +  +        F TPR ++     L+           P
Sbjct: 150 PLT----QSDVKGDIYEYLLSKLTTAGIN--GQFRTPRHIIDAMVELI----------DP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA------------DCGSHHKIPPILVPH-------- 243
                + DP CGT GFL  AM ++             + G+ H    +L P+        
Sbjct: 194 QPTDVICDPACGTAGFLARAMEYLNRVHSSEAGTFEDEDGNKHYTGDLLEPYREHINKQM 253

Query: 244 --GQELEPETHAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             G + +     V    M++  +       +  L+K++++     ++ F    F   L+N
Sbjct: 254 FWGFDFDTTMLRVSSMNMMLHGVNGANILYQDSLNKSVKENYPEQEEDF----FDIILAN 309

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       K ++++ + N ++     GL K     +LF+ H+   L+L    GGRAA+
Sbjct: 310 PPF-------KGSLDETNTNPDV----LGLVKTKKTELLFVAHILRALKL----GGRAAV 354

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEE 417
           ++    LF   +     ++R  L+EN+ +E IV+LP+ +F     ++T + + +   + E
Sbjct: 355 IVPDGVLF--GSSKAHQQLRTELIENNQLEGIVSLPSGVFKPYAGVSTAILLFTKGGSTE 412

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRII----NDDQRRQILDIYVSRE 460
           R      +   DL     +   KR  +     DD    I      RE
Sbjct: 413 R------VWFYDLQADGYSLDDKRTPLKGEGGDDLPDAIAKWKQYRE 453


>gi|329724457|gb|EGG60965.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 240

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 24/250 (9%)

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +   TL    F G  F   ++NPP+  KW  D      E  +G        L   S    
Sbjct: 2   RNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADF 56

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP 
Sbjct: 57  AFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPA 109

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q  +I+D 
Sbjct: 110 NIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDT 163

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPL 510
           Y  +    K+S     +        +  P  +    ++  +     + +     ++++ +
Sbjct: 164 YKRKATIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEI 223

Query: 511 HQSFWLDILK 520
            Q     + +
Sbjct: 224 EQEINAYLKE 233


>gi|291613558|ref|YP_003523715.1| restriction modification system DNA specificity domain protein
           [Sideroxydans lithotrophicus ES-1]
 gi|291583670|gb|ADE11328.1| restriction modification system DNA specificity domain protein
           [Sideroxydans lithotrophicus ES-1]
          Length = 815

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 108/636 (16%), Positives = 211/636 (33%), Gaps = 97/636 (15%)

Query: 59  YLAFGGSNIDLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--A 111
           Y      + + E            Y+ Y  ++     +G  +        I   ++N   
Sbjct: 37  YKFMDDMDAEAEELGGKRSFFAGEYARYGWAKLMAPNMGGFDVLALYSEAIGKMNENPGI 96

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             +F D  F +          L    K  +    +        + + +E+L+   GS+  
Sbjct: 97  PTLFRDI-FKNAYLPYRDPETLRIFLKEIN----YFTYDHSEKLGDAFEYLLSVLGSQG- 150

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TPR ++     ++           P     + DP CGT GFL  A  H+    
Sbjct: 151 -DAGQFRTPRHIIDFMVEIV----------DPQKGERILDPACGTAGFLISAWKHILKHN 199

Query: 232 SHHKIPPILVP----------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +   L P          HG ++ P+   + +  + +             ++ +  T
Sbjct: 200 TKKNLGDQLTPEQRAYIAANVHGYDISPDMVRLSLVNLYLHGF-------TDPHVVEYDT 252

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L+ +    +     L+NPPF       K  ++   +            + +   +LF+ +
Sbjct: 253 LTSEEKWNETADVILANPPF----MSPKGGIKPHKRFS---------VQATRSEVLFVDY 299

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FR 400
           +A  L    +  GRAAI++    +F  ++GS   ++R+ L++N L+ A+++LP+ +F   
Sbjct: 300 IAEHL----SPNGRAAIIVPEGIIF--QSGSAYKQLRQMLVKNSLV-AVISLPSGVFNPY 352

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459
           + + T + +L      +R  +V  +   +      N G +RR +           Y++  
Sbjct: 353 SGVKTSILLLDKW-LAKRTSEVLFVKVENDGF---NLGAQRRAMAGSGLPDAAAAYLAFR 408

Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             +      + D   F           R + +++KT L     +     LS         
Sbjct: 409 HSQEDVTPTIFDSSQF-----------RNAHVVEKTRLG----ENGDWNLSGERYRIDEA 453

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                    +       +     KS            + I  + N F  + P    V   
Sbjct: 454 RTSSFNLMPFESVCTLEYGSSLPKSERRDGPYPVLGSNGITGYHNKFLIEGP--AIVIGR 511

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN- 636
            G     T + E    P   +   Y+V+ V+P   D       +        + G  I  
Sbjct: 512 KGSAGEVTYVAEN-CFPIDTT---YYVKPVNPEASDIRYLYQVLKTLKLTDLKGGAGIPG 567

Query: 637 FNR---FFYQYQPSRKLQ---DIDAELKGVEAQIAT 666
            NR   +     P   L    +I  E++G +  I  
Sbjct: 568 LNRKDVYEAHQIPLPPLAIQKEIVEEIEGYQKIIDG 603


>gi|313159760|gb|EFR59117.1| N-6 DNA Methylase [Alistipes sp. HGB5]
          Length = 502

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 93/483 (19%), Positives = 172/483 (35%), Gaps = 56/483 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTN 95
              L+ +    E T     E Y +    ++    +   +  G +    +  S        
Sbjct: 33  MFFLK-VYDTQEETWEYKDENYKSIIPEDLRWRKWAVDEKDGEALTGEALLSFVNEKLFP 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           T  NL   I + +  AK+I ++  F+     ++   LL ++    + IE   D       
Sbjct: 92  TLKNLP--IDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEFD-DADDRHTF 147

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE +++   S  +  A +F TPR +      +L           P +  T  D T G
Sbjct: 148 GDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSG 195

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT A+N+V+   S  +    L     GQE +P  + + +  +L+  +E+    +  
Sbjct: 196 TGGFLTSALNYVSKSVSSAEDGEKLQNAVVGQEWKPLPYLLSITNLLLHDIEAPNIANCD 255

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                  T   D     +      NPP+G   E    +              P   + S+
Sbjct: 256 SLG----TNITDFKESDKVDVIGMNPPYGGSTEDSVKS------------NFPMQYRSSE 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + LF+  +  +L+     GGR  +++    LF       +  ++  LL    +  I+ L
Sbjct: 300 TADLFIALIMYRLKA----GGRCGVIIPDGFLFGTD--GAKLALKENLLRKFNLHTIIRL 353

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRG--KVQLINATDL-WTSIRNEGKKRRIINDDQR 449
           P  +F   T+IAT +   +N + E  +   K +      L          K + +  +  
Sbjct: 354 PGSIFSPYTSIATNILFFNNEEAEGCKEGFKTKETWFYRLDMPEGYKHFSKTKPMKVEHT 413

Query: 450 RQILDIYVSREN------GKFSRMLDYRTFGYRRIKVLR---PLRMSFILDKTGLARLEA 500
             I + +  R+       G+ SR+   +          +   P     IL    L +   
Sbjct: 414 LPIQEWWKDRKEIISDEVGEKSRVFTAQQLIDLDCNFDQCKFPKEEEEILPPAELLKQYF 473

Query: 501 DIT 503
           +  
Sbjct: 474 EKR 476


>gi|154488697|ref|ZP_02029546.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis
           L2-32]
 gi|154082834|gb|EDN81879.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis
           L2-32]
          Length = 492

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 163/484 (33%), Gaps = 66/484 (13%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNL 100
           +E  ++ T     +          ++E     A + F  T E      S           
Sbjct: 26  IEVIMQLTYLMFMKSLDDKELEAENMEMLGMTAKHVFPQTEEGQAIRWSRFKDLPAEQMF 85

Query: 101 ESYIASFSDNAKAIFEDFDF----SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           +          K +  D  F            K   L K       + L         + 
Sbjct: 86  DVVSQKAFPFIKTMHSDNAFAESMEDAAFGFNKPKTLEKAVSGIDEL-LSNYVQDADDLG 144

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  +     F TP+ + ++  AL            P   + + DP CGT
Sbjct: 145 DLYEYMLSKLNTAGTN--GQFRTPQHIRNMMVALA----------GPKPGQLICDPACGT 192

Query: 217 GGFLTDAMNHVADCGSH------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            GFL  A   +             K        G + +     +    +L+  ++     
Sbjct: 193 AGFLISAAESIRKNHGQEMTEEQWKTFSGEQFTGFDTDQTMVRISAMNLLLHSID----- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               +I+   +LS+      +F   L+NPPF          V+ E  +  L      + +
Sbjct: 248 --HPDIRNQDSLSRLNTIRDKFDLILANPPFTGS-------VDVEDIDDSL----KAVVE 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LF+      L+L    GGR   ++ +  LF   +     ++R  L++N  +EAI
Sbjct: 295 TKQTELLFVALFLRMLKL----GGRCVCIVPNGVLFRSNS-KAYRQLRAELVDNQRLEAI 349

Query: 391 VALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + +P+ +F   + ++T + + +         KV L N      ++ ++       ND   
Sbjct: 350 IYMPSGVFKPYSGVSTAILVFTKTDAGG-TDKVWLYNMEGDGYTLDDKRDPDEKHND--I 406

Query: 450 RQILDIYVS--------RENGKF----SRMLDYRT-FGYRRIKVLRPLRMSFILDKTGLA 496
             IL+ + +        R +  F    S + +    F + +    +  R+ +   +  LA
Sbjct: 407 PDILERWGNLDAEEQRARTDKSFLVPKSEIAENDYDFSFNKYAETKYERIEYPPTEEILA 466

Query: 497 RLEA 500
            L+ 
Sbjct: 467 DLDD 470


>gi|227892230|ref|ZP_04010035.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227865952|gb|EEJ73373.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 471

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 178/485 (36%), Gaps = 63/485 (12%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                 +++Y    G+  + +  +      +++   Y        +   +L   I   + 
Sbjct: 43  EDILETQKQYEMSDGTVGNTQLVIDPKDTYYHHYLLYKDRKFKYEDLIKSLYK-IEKKNP 101

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             K +F+D   S+   R+          K                    +E L+      
Sbjct: 102 VLKNMFKDIKGSNMAGRVADLIFAMMYLKKEPS----------------FEELLDWIARS 145

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
               +E  +TP  +  L   L+    + +         T+YDP  GT   L +  +   +
Sbjct: 146 SGSRSEFSITPLSINKLMVKLVGSFKENI---------TVYDPAVGTANLLLNVDSENFE 196

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +GQ++      +     +++ + S      +  ++ G +L+ +   G
Sbjct: 197 KNK---------YYGQDINKFVLEIAKMNAILQDINS-----KNIELKLGDSLNSNWNFG 242

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    +++ P    W   KD +E++++    G+        +     F++   +KL   
Sbjct: 243 -KADVVVADMPLAMSWRPSKD-LEQDNRYKNYGKLP------NKNEWPFILEGLDKL--- 291

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G    + +   LF     + E ++RR LLE+ +I+A++ LP  L++ T++AT L +
Sbjct: 292 -SADGTMIALSAQGILFRA---AKEYKVRRKLLEDGMIKAVILLPEKLYYGTSVATCLLV 347

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRML 468
           L   K   +   V  INA+  +  +++      ++ DD   +I+D++ + +E   FSR +
Sbjct: 348 L---KKSSKDRDVFFINASKEYQKVKS----NNVLTDDNIGKIVDVFNNQKEIKNFSRKI 400

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            +         ++    ++    +  L + +      K+     +    + K M + +  
Sbjct: 401 SFEEIQKNDFNLIMARYINQYQFQEKLNQQKEFENLTKIDNKIGNVDEKLNKIMRELVTD 460

Query: 529 YGWAE 533
               E
Sbjct: 461 DKLKE 465


>gi|315608531|ref|ZP_07883516.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315249779|gb|EFU29783.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 505

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 156/467 (33%), Gaps = 71/467 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+               +Y A     I      +   +  +   E     +      
Sbjct: 33  MFFLK------VYDTQEETWEYKASKDRTIFESIIPEELRWRNWAIDEKDGDAMTGDALL 86

Query: 96  --TRNNLESYIASFS---DNAKAI-FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               + L   +       D  ++       F      ++   LL ++    + IE   D 
Sbjct: 87  SFINDKLFPTLKGLEVTRDTPRSKAIVKEVFEDLNQYMKNGILLRQVVNVINEIEFD-DA 145

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               +  +IYE +++   S  +  A +F TPR +       L          SP +  T+
Sbjct: 146 ADRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------SPVLGETV 193

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESD 267
            D T GTGGFLT A+N++           +      GQE +P  + + +  +L+  +ES 
Sbjct: 194 GDFTSGTGGFLTSALNYLHKQVKTTDDGRLYQQAVIGQEWKPLPYLLSITNLLLHDVES- 252

Query: 268 PRRDLSKNIQQGS---TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  NI+      T   D     + +    NPP+G   +    +             
Sbjct: 253 ------PNIRHCDSLGTKMSDFKEEDKVNVIAMNPPYGGSTDAASKS------------N 294

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            P   + S+ + LF++ +  +L+      GRAA+++    LF       +  I++ +L +
Sbjct: 295 FPMELRSSETADLFMVLIMYRLKA----NGRAAVIVPDGFLFGTD--GAKLAIKQKMLRD 348

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER-----RGKVQLINATDLWTSIRNEG 438
             +  I+ LP  +F   T+IAT +   +N + E         K                 
Sbjct: 349 FNLHTIIRLPGSIFAPYTSIATNILFFNNERAEGAEEGFSTDKTWF--YRLDMPEGYKHF 406

Query: 439 KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTFGYRRIK 479
            K + +  +  + I D +  R+       G+ +R    +        
Sbjct: 407 SKTKSMKLEHCQPICDWWNDRKEIASDELGEKARCFTAKELSEMDFN 453


>gi|300215354|gb|ADJ79767.1| Modification subunit [Lactobacillus salivarius CECT 5713]
          Length = 463

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/498 (17%), Positives = 166/498 (33%), Gaps = 71/498 (14%)

Query: 34  VILPFTLLRRLECALEPTRS------AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
            +L     + +   +            V++KY     +  D +  +      +++   Y 
Sbjct: 22  YVL-MAFYQSISQKVLRKFDKDGSILEVQKKYEESRETVQDAQFVIAPQDTYYHHYQMYK 80

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            +         +L + I   +   K IF+D   S++    E A         F  I+   
Sbjct: 81  ANKFEYVELVKSLYN-IEEKNPKLKNIFQDVSGSTSSLPSETA---------FEKIDSRN 130

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +          +E  +               T +++  L T L+    + +         
Sbjct: 131 EVS--------FEENLEIIKRSSGARDNYDYTSKNIRKLITKLVGSKKEGV--------- 173

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YDP  GT   L          G +         +GQE+  +   + +   ++  ++ D
Sbjct: 174 SIYDPALGTASLLL---------GINRDALKENKYYGQEINTQVIKIAIMNAIVNDVDDD 224

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +  +TL+ +   G +    +S+PP   KW  D++       + +      G
Sbjct: 225 K-----FEFKNENTLANNWEFG-KVDIVVSDPPINMKWNVDRNL------SQDRRYRDYG 272

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +     F++   +KL    +  G   + +    LF    G+ E  IRR LLE+  I
Sbjct: 273 EMP-NKADWGFILDGIDKL----SDNGMMVVSVVQGTLFR---GAKEYNIRRKLLEDGKI 324

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            A++ LP +    T IAT L +L     ++    V  INA+  +           I+ + 
Sbjct: 325 RAVIQLPGNTKISTTIATCLLVLRKSSEDK---DVFFINASQEYEK----KGLENILTEA 377

Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+DI+  ++  K FS +  Y         +     ++    K  L   E      K
Sbjct: 378 NVDKIVDIFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEK 437

Query: 507 LSPLHQSFWLDILKPMMQ 524
           L          +   M  
Sbjct: 438 LDEKLSQTDATLKNLMGD 455


>gi|20091245|ref|NP_617320.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
 gi|19916364|gb|AAM05800.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
          Length = 420

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 48/294 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +  +        F TPR V+ L   L           SP     + DP CGT GFL  
Sbjct: 64  LSKIATAG--QNGQFRTPRHVIRLMVELT----------SPQPTDIICDPACGTAGFLVC 111

Query: 223 AMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           A  H+ +   +      L       + HG + +     +    ML+  +E       + +
Sbjct: 112 AGEHLREHHPNILHDEKLKQHFHRGMFHGFDFDNTMLRIGSMNMLLHGVE-------NPD 164

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+   +L++D  + +  +   L+NPPF          ++ E  + EL +    + K    
Sbjct: 165 IRYRDSLAQDYASDEEAYTLVLANPPFAGS-------LDYESTSKELLK----VVKTKKT 213

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LF+      L+     GGRAA+++    LF   +     E+RR L+E   ++AIV+LP
Sbjct: 214 ELLFVALFMRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRMLVEEQKLDAIVSLP 267

Query: 395 TDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             +F     ++T + + +   +      V   +      S+  + K+  ++++D
Sbjct: 268 GGVFKPYAGVSTAILLFTKTNSGG-TDHVWFYDMQADGWSL--DDKRSPLLSED 318


>gi|307312949|ref|ZP_07592577.1| N-6 DNA methylase [Escherichia coli W]
 gi|306907117|gb|EFN37624.1| N-6 DNA methylase [Escherichia coli W]
 gi|315063582|gb|ADT77909.1| N-6 DNA methylase [Escherichia coli W]
 gi|323380337|gb|ADX52605.1| N-6 DNA methylase [Escherichia coli KO11]
          Length = 544

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|300925836|ref|ZP_07141684.1| N-6 DNA Methylase [Escherichia coli MS 182-1]
 gi|300418088|gb|EFK01399.1| N-6 DNA Methylase [Escherichia coli MS 182-1]
          Length = 544

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|187732102|ref|YP_001882946.1| N-6 DNA methylase [Shigella boydii CDC 3083-94]
 gi|187429094|gb|ACD08368.1| N-6 DNA methylase [Shigella boydii CDC 3083-94]
 gi|320177258|gb|EFW52265.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella dysenteriae CDC 74-1112]
          Length = 544

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +++ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|227892124|ref|ZP_04009929.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227866056|gb|EEJ73477.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 463

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/506 (17%), Positives = 167/506 (33%), Gaps = 73/506 (14%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRS------AVREKYLAFGGSNIDLESFVKVAGYS 79
               DF   +L     + +   +            V++KY     +  D +  +      
Sbjct: 16  IDIHDF--YVL-MAFYQSISQKVLRKFDKDGSILEVQKKYEEGKETVQDAQFVIAPQDTY 72

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           +++   Y  +         +L + I   +   K IF+D   S++    E A         
Sbjct: 73  YHHYQMYKANKFEYVELVKSLYN-IEEKNPKLKNIFQDVRGSTSSLPSETA--------- 122

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F  I+   +          +E  +               T +++  L T L+    + + 
Sbjct: 123 FEKIDSRNEVS--------FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV- 173

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                   ++YDP  GT   L          G +         +GQE+  +   + +   
Sbjct: 174 --------SIYDPALGTASLLL---------GINRAALKENKYYGQEINTQVIKIAIMNA 216

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +I  +  D         +  +TL+ +   G +    +S+PP   KW  DK+         
Sbjct: 217 IINDVADDKFE-----FKNANTLANNWEFG-KADIVVSDPPMSMKWNIDKNL-------S 263

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           +  R+       +     F++   NKL    +  G   + +    LF    G+ E  IRR
Sbjct: 264 QDKRYQDYGDLPNRADWGFILDGINKL----SDDGMMVVSVVQGTLFR---GAKEYNIRR 316

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LLE+  I A++ LP +    T IAT L +L     ++    V  INA+  +        
Sbjct: 317 KLLEDGKIRAVIQLPGNTKISTTIATCLLVLRKSSEDK---DVFFINASQEYEK----KG 369

Query: 440 KRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
              I+ +    +I+DI+  ++  K FS +  Y         +     ++    K  L   
Sbjct: 370 LENILTEANIDKIVDIFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQ 429

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQ 524
           E      KL          +   M  
Sbjct: 430 EEIKNLEKLDEKLSQTDATLKNLMGG 455


>gi|82546467|ref|YP_410414.1| type I restriction enzyme M protein [Shigella boydii Sb227]
 gi|81247878|gb|ABB68586.1| putative type I restriction enzyme M protein [Shigella boydii
           Sb227]
 gi|320185254|gb|EFW60031.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella flexneri CDC 796-83]
 gi|332087071|gb|EGI92205.1| N-6 DNA Methylase family protein [Shigella boydii 3594-74]
          Length = 544

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 132/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +++ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +E 
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLET 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|182414826|ref|YP_001819892.1| N-6 DNA methylase [Opitutus terrae PB90-1]
 gi|177842040|gb|ACB76292.1| N-6 DNA methylase [Opitutus terrae PB90-1]
          Length = 563

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 146/424 (34%), Gaps = 62/424 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS- 93
           I     L+RL+          +   L        +    K A    Y    +S       
Sbjct: 32  ITYLLFLKRLDDL--QKNEENKAARLKLKKLERRIFPAAKDAKGRPYEDCRWSRFQHLEA 89

Query: 94  ----TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               T    ++  ++ +   +                +    LL K+      I +    
Sbjct: 90  KEMFTVVSEHVFPFLRTLGGDDSTYAHH--MKDARFTIPTPALLAKVVDLIDQIPME--- 144

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  S        F TPR ++ L   L           +P     +
Sbjct: 145 -DRDTKGDLYEYMLGKIASAG--QNGQFRTPRHIIQLMVELT----------APTAKDVI 191

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIR 262
            DP CGT GFL  A  ++              +     + HG + +     +    ML+ 
Sbjct: 192 CDPACGTAGFLVAAGEYLRTRHPEILRDTKLRQHFHHHLFHGFDFDNTMLRIGSMNMLLH 251

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            +E       + +I+   +L++D     ++F   L+NPPF          ++ E+   +L
Sbjct: 252 GVE-------NPDIRYRDSLAQDHAGEEEKFTLLLANPPFAGS-------LDYENCAKDL 297

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            +    + K     +LFL      L+     GGRAA+++    LF   + +    +R+ L
Sbjct: 298 QQ----IVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSNAHRTLRKLL 347

Query: 382 LENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E+  ++A+++LP  +F     ++T + + +        G    +    +     +   K
Sbjct: 348 VEDQKLDAVISLPGGVFKPYAGVSTAILLFTK----TNSGGTDHVWFYKVEADGMSLDDK 403

Query: 441 RRII 444
           R  +
Sbjct: 404 RTEL 407


>gi|158522735|ref|YP_001530605.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511561|gb|ABW68528.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 554

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 158/477 (33%), Gaps = 92/477 (19%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           I     ++RL+  L+  + A  E         F G+ I  E   K          +   +
Sbjct: 34  ITYLLFMKRLDE-LDQKKQADGEWAGEKYTSKFAGTWIPPEHRDKPEKEQKPFAVK-RHT 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFD---------FSSTIARLEKAGLLYKICKNF 140
              S   R   E  +            D +           + +  + K  LL +  K  
Sbjct: 92  LRWSEFKRMQAEEMLQHVQTKVFPFLRDMNGAESNFTHHMKNAVFIIPKPALLVEAVKTI 151

Query: 141 SGIE--LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             I   +  D+         +  ++YE L+    S        F TPR ++ +   L+  
Sbjct: 152 DEIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIASAG--KNGQFRTPRHIIKMMAELV-- 207

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPI---------- 239
                    P +   + DP CGTGGFL  A  H+    A       + P           
Sbjct: 208 --------QPQLGHRIADPACGTGGFLLGAYQHIVTQLAKKAGKKDLQPDEDGFVRTSVA 259

Query: 240 ------------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                          +G +++     + +  +++  ++          I    TLSK   
Sbjct: 260 AGLTEKAQAILQSSLYGYDIDSTMVRLGLMNLMMHGID-------EPQIDYKDTLSKGYL 312

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               +   ++NPPF      DK  + +                 +   +LF+ ++   L+
Sbjct: 313 EEAEYDVVMANPPFTGSI--DKGDINENL-----------TLSTTKTELLFVENIYRLLK 359

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY 406
                GG A +++    LF   +G     +R+ L+E   ++A+V +P+ +F     ++T 
Sbjct: 360 ----KGGTACVIVPQGVLF--GSGKAFKNLRQLLVERCELKAVVTMPSGVFKPYAGVSTA 413

Query: 407 LWILSNR---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSR 459
           + + +     K +  +   + +   ++     +   KR  +      + I+  Y +R
Sbjct: 414 VLLFTKAWGPKDKVTQPATEHVWFYEMAADGYSLDDKRTKLAGYGDLQDIITKYHAR 470


>gi|331678991|ref|ZP_08379663.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
 gi|331073056|gb|EGI44379.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
          Length = 544

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|312128928|ref|YP_003996268.1| site-specific DNA-methyltransferase (adenine-specific)
           [Leadbetterella byssophila DSM 17132]
 gi|311905474|gb|ADQ15915.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Leadbetterella byssophila DSM 17132]
          Length = 475

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 149/454 (32%), Gaps = 66/454 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKY-------LAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +   +  +  +  KY       L +     D E        +F N   +    
Sbjct: 34  MIFLKLFDDK-DKEKEILNPKYRSPIPAELQWRNWAEDDEGITGDELINFVNNKLFPTLK 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
             +    + L   I               F  T   ++      +     + I+    + 
Sbjct: 93  NLTVAADDRLGITIRQI------------FDGTNNYMKSGTTFRQAINKLNEIDFT-SSK 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              + + IYE +++       +   +F TPR V      ++          +P +   + 
Sbjct: 140 DHHIFNVIYEEILQGLA--AKKDTGEFYTPRAVTQFIVDMV----------NPKLGEKIT 187

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP CGTGGFL   + H+     +      L     G EL+P    + V  ++   +E   
Sbjct: 188 DPACGTGGFLVCTIEHLKRQVKNIDDRKTLQETVTGSELKPLPFMLSVVNLITHDIEVPQ 247

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +     ++ +++ +      R    ++NPPFG                  +    P  
Sbjct: 248 LENGDSLSREYTSIKQ----KDRVDIIIANPPFGGV------------VGDGMETNFPLN 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +  + + LFL+     L+     GGRA IVL    L        +  +R+ LLE+  + 
Sbjct: 292 YRTKESADLFLILFIQLLK----DGGRAGIVLPDGSL---TGDGVKQRVRQKLLEDCNVH 344

Query: 389 AIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIIND 446
            IV LP  +F     + T L      K        + I   +      +    K + I  
Sbjct: 345 TIVRLPQSVFAPYATVNTNLIFFEKGKP------TKEIWYYEHTLPDGQKAYSKTKPIRI 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           ++   I   + +RE  + +  +  +T   R   +
Sbjct: 399 EEFEPIKQWWKNREESEVAWKVSMQTIIDRNYDL 432


>gi|270296273|ref|ZP_06202473.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273677|gb|EFA19539.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 502

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 167/481 (34%), Gaps = 52/481 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E T     EKY +    ++   ++          T E  LS +      
Sbjct: 33  MFFLK-VYDTQEETWEWKDEKYKSIIPEDLRWRNWAIDKKDGEALTGEALLSFVNEKLFP 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 I + +  AK+I ++  F+     ++   LL ++    + IE   D        +
Sbjct: 92  TLKNLPIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEFD-DADDRHTFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR +      +L           P +  T  D T GTG
Sbjct: 150 IYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+ ++            L     GQE +P  + + +  +L+  +E+    +    
Sbjct: 198 GFLTSALKYMGRNIGSAADGEKLQNAVVGQEWKPLPYLLSITNLLLHDIEAPNITNCDSL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                T   D     +      NPP+G   E    +              P   + S+ +
Sbjct: 258 G----TNVTDFKESDKVDVIGMNPPYGGSTEDSVKS------------NFPVQYRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+     GGR  +++    LF       +  ++  LL    +  I+ LP 
Sbjct: 302 DLFIALIMYRLKA----GGRCGVIIPDGFLFGTD--GAKLALKENLLRKFNLHTIIRLPG 355

Query: 396 DLFF-RTNIATYLWILSNRKTE--ERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQ 451
            +F   T+IAT +   +N + E  E   K +      L          K + +  +    
Sbjct: 356 SIFSPYTSIATNILFFNNEEAEGCEEGFKTKETWFYRLDMPEGYKHFSKTKPMKVEHTLP 415

Query: 452 ILDIYVSREN------GKFSRMLDYRTFGYRRIKVLR---PLRMSFILDKTGLARLEADI 502
           I + +  R+       G+ SR+   +          +   P     IL    L +   + 
Sbjct: 416 IQEWWKDRKEIISDEVGEKSRVFTAQQLIDLDCNFDQCKFPKEEEEILPPAELLKQYFEK 475

Query: 503 T 503
            
Sbjct: 476 R 476


>gi|99078516|ref|YP_611774.1| N-6 DNA methylase [Ruegeria sp. TM1040]
 gi|99035654|gb|ABF62512.1| Type I restriction enzyme EcoEI M protein [Ruegeria sp. TM1040]
          Length = 524

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 141/414 (34%), Gaps = 64/414 (15%)

Query: 35  ILPFTLLRRLECA--LEPTRSAVREKYL------------AFGGSNIDLESFVKVAGYSF 80
           I     ++RL+     E  ++ +    +                   D E+  +      
Sbjct: 32  ITYLLFIKRLDEIHTREEAKANMLGSEMERRIFPEGTFTYKVSDDPKDDETIERPYDDLR 91

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           +       +         ++  ++ + ++   A                  LL K+ +  
Sbjct: 92  WQRLINFENREKMKLMDQHVFPFMRTMAEEGTAFATH--MKDARLGFSSPALLDKVMRLL 149

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             I++           ++YE+++ +  S        F TPR ++ L   L+         
Sbjct: 150 DVIQMD----DRDTKGDVYEYMLGKIASAG--QNGQFRTPRHIIELMVRLM--------- 194

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHA 253
            +P    T+ DP  GT GFL  A   + +            +     + HG + +P    
Sbjct: 195 -APTPKDTICDPAAGTCGFLVTAGEFLRETHPEMLRNPEQRQHFHNSMFHGFDFDPTMLR 253

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +    M++  +E+      +    + S   +       +   L+NPPF    + D  A +
Sbjct: 254 IGSMNMVLHGVEN------ADVAYRDSLAEEHGADTGTYSLILANPPFAGSLDYDATAKD 307

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            +            + K     +LFL      +      GGRAA+V+    LF   +   
Sbjct: 308 LQK-----------VVKTKKTELLFLALFLRLMRT----GGRAAVVVPEGVLF--GSSKA 350

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
             +IRR ++E+  ++AI+ LP+ +F     ++T + I +  ++      V   +
Sbjct: 351 HKDIRRIIVEDQKLDAIIKLPSGVFRPYAGVSTAIMIFTKTESGG-TDNVWFYD 403


>gi|194451585|ref|YP_002048347.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194409889|gb|ACF70108.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 544

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|297571613|ref|YP_003697387.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931960|gb|ADH92768.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 490

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 127/346 (36%), Gaps = 45/346 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F  +   ++   L+ ++    + I    D         IYE L++   S     + ++ T
Sbjct: 113 FEDSNQYMKDGILIRQLVNLINEINFD-DYADLHAFGEIYETLLKELQSAG--SSGEYYT 169

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR V      +L          +P +   + D   GT GFLT A+ H+       +    
Sbjct: 170 PRAVTDFMIKML----------NPKLGERVADFAAGTSGFLTSALKHLDTQVESVEDREK 219

Query: 240 LV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G E +P  + + V  +L+  ++       +   +      ++    ++F     
Sbjct: 220 FQNAVFGIEKKPMPYLLGVTNLLLHDVDEPAFFHGNSLSRN----VREYKEHEKFEVIAM 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G     +++AV+            P   + S+ + LF+  +  +L+      GRA 
Sbjct: 276 NPPYGG---TEQEAVKANF---------PQAFRSSETADLFVALITYRLK----KNGRAG 319

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE 416
           +VL    LF   +   +  ++  L++   +  I+ LP  +F   T+IAT L         
Sbjct: 320 VVLPDGFLF--GSDGAKLALKERLIKEFNLHTIIRLPGSVFSPYTSIATNLLFFDKTHPT 377

Query: 417 ERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSREN 461
           +       +    +          K + +  +  +  +D + SRE 
Sbjct: 378 KD------VWFYRVGKPEGYKNFSKTKPLLLEHLQPAMDWWSSREE 417


>gi|309704073|emb|CBJ03419.1| DNA methylase M [Escherichia coli ETEC H10407]
          Length = 544

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLVPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I ++ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKEND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|312965802|ref|ZP_07780028.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75]
 gi|312289045|gb|EFR16939.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75]
          Length = 544

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 133/365 (36%), Gaps = 69/365 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGS-------LDEEDIDSTLS----AMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTDEVWFYDLQNDGYSLDDKRNPIKDND 434

Query: 449 RRQIL 453
              +L
Sbjct: 435 LPHLL 439


>gi|207722056|ref|YP_002252494.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2]
 gi|206587230|emb|CAQ17814.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2]
          Length = 481

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 116/358 (32%), Gaps = 56/358 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
               +            D  F+     +    LL K+ +    I LH       V   +Y
Sbjct: 98  FLRALGDTDPVCGRHLRDIRFT-----MPTPALLAKVVQQLDAIPLH----RRDVRGAVY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ R           F TPR +V     L            P    TL DP  GTG F
Sbjct: 149 DALLGRIPLVG--QGGRFHTPRHIVRFMVELT----------RPDPSDTLCDPAAGTGSF 196

Query: 220 LTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           L  A  ++                    + HG E++     +    +L+  +E    RD 
Sbjct: 197 LAAAGEYLRREHPGLLHDARQSVHFHHGMFHGYEIDRAMLRIGSMNLLLHGVEGPDLRD- 255

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  +    D      +   L++PPF    +      +  H+            +  
Sbjct: 256 -----HDALAPTDANEAGAYSLVLAHPPFTGDVDHGSVDPDLLHR-----------VRTR 299

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LFL    + L+     GGRAA+++    LF   +G     +RR L+EN  +E ++ 
Sbjct: 300 KAELLFLARCLHLLKP----GGRAAVIVPDGVLF--GSGLAHRTLRRMLVENHRLEGVIK 353

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           LP  +F     I T + + +   T    G    +   DL     +       +  + R
Sbjct: 354 LPAGVFRPYAGIGTAILLFTRTDT----GGTGHVWFYDLRADGFSLDDPHTPLLPEDR 407


>gi|167627756|ref|YP_001678256.1| N-6 DNA methylase family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597757|gb|ABZ87755.1| N-6 DNA methylase family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 315

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 52/329 (15%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              + +F TPR +V     ++          +P   +T+YDP  GT GFL DA  H+   
Sbjct: 5   GGNSGEFYTPRPLVKAIVDVV----------NPQTGQTVYDPAAGTCGFLIDAYEHMYSK 54

Query: 231 G---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-- 285
               +  K        G+E  P ++ + V  M++  +        S NI + +TL KD  
Sbjct: 55  ELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI-------TSPNINKANTLVKDIR 107

Query: 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            L    R+   L+NPPFG K            +   +    P   K +   +LFL H+  
Sbjct: 108 SLEEKDRYDIILANPPFGGK------------EKATIQTNFP--IKSNATELLFLQHIYK 153

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+L    GGR  +V+    LF  +  +    +++ LLEN  +  IV+LP  +F   + +
Sbjct: 154 SLKL----GGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGV 207

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T +         +R G    I   ++    +    K + I  +   + L+I+ SR+  +
Sbjct: 208 KTNVIFF------DREGSTTDIFYYEITPPYK--LTKNKPIQFEHFAEFLEIWQSRKLTE 259

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            S +++        I    P ++  I  K
Sbjct: 260 NSWIVNVADIKDYDISAKNPNKIETIEHK 288


>gi|300689755|ref|YP_003750750.1| typeI restriction enzyme (hsdM) [Ralstonia solanacearum PSI07]
 gi|299076815|emb|CBJ49425.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           PSI07]
          Length = 481

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 123/358 (34%), Gaps = 56/358 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
               +            D  F+     +    LL ++ +    I LH   V       +Y
Sbjct: 98  FLRALGDNDPAGGHHMRDIRFT-----VPTPALLARVVQLLDAIPLHRRDVK----GAVY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+ R    ++     F TPR +V     L            P    TL DP  GTGGF
Sbjct: 149 ESLLGRIA--LAAQGRPFHTPRHIVRFMVELT----------RPDPSDTLCDPAAGTGGF 196

Query: 220 LTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           L  A  ++                    + HG E++     +    +L+  +E    RD 
Sbjct: 197 LAAAGEYLRREHPGLLHDARQSAHFHHGMFHGYEIDRAMLRIGSMNLLLHGVEGADLRD- 255

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  +  ++       +   L++PPF          V+    + +L R    L +  
Sbjct: 256 -----CDALAARHADEAGAYSLILTHPPFTGD-------VDHGSADPDLLR----LVRTR 299

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LFL    + L      GGRAA+++    LF   +G     +RR L+E+  +E ++ 
Sbjct: 300 KAELLFLARCLHLLRP----GGRAAVIVPDGVLF--GSGIARGTLRRMLVEDHKLEGVIK 353

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           LP  +F     I T + + +   T    G    +   DL     +    R  +  + R
Sbjct: 354 LPGGVFRPYAGIGTAILLFTRTDT----GGTGHVWFYDLRADGFSLDDLRTPLLPEDR 407


>gi|78776896|ref|YP_393211.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78777791|ref|YP_394106.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497436|gb|ABB43976.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78498331|gb|ABB44871.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 530

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 212/542 (39%), Gaps = 54/542 (9%)

Query: 9   ASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            SL ++ W  ++ L       + + + I+ F  L+ L          +   +       +
Sbjct: 13  KSLCDYYWAYSDILRDIGINESTYDQRIMAFMALKLLIDN-----DKLMFTFEYNNNFGL 67

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-------AIFEDFDF 120
           D   F K        T    +  +       N  +  + ++ +           F+ F+ 
Sbjct: 68  DHAIFAKYDLGETKKTFLNIIKNIEKLGQNLNYFTQESKYNPDTSKNILTYLNHFKTFEL 127

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              I  L    L  +   +    + +    P     ++YE  I R      +      T 
Sbjct: 128 ERYIQELPNNYL--ENVLDIYTYKANFRDYPKEQYKDLYEATISRMKKLSGDLTGQHFTQ 185

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + +VHL   +     +   K +      +YDPTCGT   L ++ ++  +          +
Sbjct: 186 KSIVHLMCEVSKFEAEGYDKLA------IYDPTCGTASMLMESAHYFYNKNK----IENI 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYC 295
             +GQEL  +T  +    + I  L+    + +   I  G+TL+   F         F + 
Sbjct: 236 EVYGQELHGQTWLLAKIFLEISSLDG-KSQGIKNTIAYGNTLTNPAFANGINGDTSFDFI 294

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-------GPGLPKISDGSMLFLMHLANKLEL 348
           ++NPPFG  W+ + D + +   + +   F           PK SDG  LF+ H+ N ++ 
Sbjct: 295 IANPPFGVDWKHNYDEIVQNMSSKKSDFFVVKDEKNKVVTPKKSDGQFLFMQHIINLMKS 354

Query: 349 PP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N    AAI+ SS+ +  G A S ES+IR+ +     + A++  P+ +F  T+I+++
Sbjct: 355 EKRRNKHAHAAIISSSTLISTGNATSSESKIRKEIFNTGFVSAVLEQPSAMFTNTDISSH 414

Query: 407 LWILSNRKTEERRGKVQLINA----TDLWTS-IRNEGKKRRIINDDQRRQILDIYVSREN 461
           +W L +  +E    K+ ++ A     +L++  ++ + K +   +    R++  +  S++ 
Sbjct: 415 IWFLDSDPSE----KITIVKADTKEEELFSPHLQAKDKMKNSYSQKNIRRLATLINSKKE 470

Query: 462 GKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT--WRKLSPLHQSFWLDI 518
            K+ S+ +D +      I +   +     ++      L  ++    +++    Q+  L  
Sbjct: 471 FKYKSKFIDSKD--RYEINISNEIGFKDEVEDLNFDELTNELNMLMKEMCEEFQNSSLFG 528

Query: 519 LK 520
           +K
Sbjct: 529 IK 530


>gi|192289909|ref|YP_001990514.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1]
 gi|192283658|gb|ACF00039.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1]
          Length = 513

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 141/408 (34%), Gaps = 60/408 (14%)

Query: 35  ILPFTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           I     +R L+ A   E  ++   +K +A     I  E    +         +   S L 
Sbjct: 32  ITYLLFIRGLDEAHSREENKANRLKKPMA---RRIFPEGKDGIGKKGGVAYEDLRWSRLK 88

Query: 93  STNTRNNLESYIASFSDNAKAIFED-----FDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           + +     E          + + E+              +    LL K+    + I +  
Sbjct: 89  NRDPATMFELGSEHVFPFLRNMAEEGTAHATHMKGARFTIPTPALLAKVVDLLADIPME- 147

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    ++YE+++ +  +        F TPR ++ L   +           +P    
Sbjct: 148 ---DRDTKGDLYEYMLAKIATAG--QNGQFRTPRHIIALMVEMT----------APTPKD 192

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGML 260
            + DP CGT GFL  A   + D                  + HG + +     +    M 
Sbjct: 193 VIVDPACGTCGFLVAAGEFLRDNHPKLFHDAESRDHFNQEMFHGFDFDGTMLRIGSMNMT 252

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +  +E         +I+   +LS++    + R+   L+NPPF    + +  A +      
Sbjct: 253 LHGVED-------PDIRYKDSLSQEHAGDEGRYSLVLANPPFAGSLDYETTAKD------ 299

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   + K     +LF+      L+     GGRAA+++    LF   + +    IR+
Sbjct: 300 -----LLAVVKTKKTELLFMALFLKLLKP----GGRAAVIVPDGVLF--GSSTAHKTIRK 348

Query: 380 WLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
            L+EN  ++ IV LP+ +F     ++T + + +   +      V   +
Sbjct: 349 MLVENHRLDGIVKLPSGVFRPYAGVSTAIVLFTKTNSGG-TDHVWFYD 395



 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 625 DKEIGRVGYEINFNRF---FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             EI   GY+++ NR+    ++    R  ++I AELK +E +IA  L+E+  
Sbjct: 460 KAEIEAAGYDLSLNRYKEVVHEAAEHRPPKEIIAELKALEQEIADGLDELEA 511


>gi|30250416|ref|NP_842486.1| hsdM; type I restriction modification enzyme methylase subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30181211|emb|CAD86409.1| hsdM; type I restriction modification enzyme methylase subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 553

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 161/477 (33%), Gaps = 91/477 (19%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87
           I     ++RL+   +  ++  R+            E          +  +E         
Sbjct: 34  ITYLLFMKRLDELDQKRQADARDG--WSDPYQSKFEGTWIPPEERNWPVAEQRPIDKRTL 91

Query: 88  ----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFS 141
                  + +     +++  +  F  +      +F     + +  + K  LL +  K   
Sbjct: 92  RWGEFKRMQAEEMLQHVQGKVFPFLKDLNGAESNFTHHMKNAVFIIPKPALLVEAVKTID 151

Query: 142 GIE--LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            I   +  D+  +      +  ++YE L+    +        F TPR ++ L   L+   
Sbjct: 152 EIFEVMEKDSRENGQSFQDIQGDVYEMLLAEIATAG--KNGQFRTPRHIIKLMAELV--- 206

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------A 228
                   P +   + DP CGTGGFL  A  ++                          A
Sbjct: 207 -------QPQLGHKIADPACGTGGFLLGAYQYIVTQLAINAGTQTLTPDEDGFTRTSVAA 259

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +        G +++     + +  +++  +E         +I    TLSK    
Sbjct: 260 AFDEKRQAILASSLWGYDIDQTMVRLGLMNLMMHGIE-------EPHIDYKDTLSKSYTE 312

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              +   L+NPPF      DK  + +  +              +   +LF+ ++   L+ 
Sbjct: 313 EAEYDIVLANPPFTGSI--DKGDINENLQLS-----------TTKTELLFVENIYRLLK- 358

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYL 407
               GG A +++    LF   +G    ++R+ L+E+  ++A++ LP+ +F     ++T +
Sbjct: 359 ---KGGTACVIVPQGVLF--GSGKAFKDLRQTLVEHCDLKAVITLPSGVFKPYAGVSTAI 413

Query: 408 WILSN---RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSRE 460
            + +     K +  +   + +   ++     +   KR         + I+  Y +R+
Sbjct: 414 LLFTKVWGMKDKVAKPATEHVWFYEMAADGYSLDDKRTKQEGYGDLQDIIAKYHARD 470


>gi|213964709|ref|ZP_03392909.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium amycolatum SK46]
 gi|213952902|gb|EEB64284.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium amycolatum SK46]
          Length = 531

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 144/421 (34%), Gaps = 62/421 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN------TSEYSLSTL 91
              LR L+      +    ++  + G    +                    T    +  L
Sbjct: 35  LLFLRLLDE-----QQNSIDQQRSLGVPVPESRDIFGPDQQHLRWRDLLAVTDPTQVKNL 89

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            +      L +  A  +             S    +E    L  +    + ++L      
Sbjct: 90  MADEVFPFLRNLGADTNGTTGEGVMAQHMRSANFGIENPNTLKSVMTLINKLDLRNK--- 146

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              M ++YE+++ +    VS     F T + ++ L   L+           P     + D
Sbjct: 147 -DFMGDLYEYMLSKLS--VSGTNGQFRTSQLIIDLMVELM----------RPSPSERIID 193

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRL 264
           P CGT GFL +A   + D  S   +   +          G + +     +    M +   
Sbjct: 194 PACGTAGFLVNASEWIRDYHSDELMKKSVRDQFEAHGLTGYDFDSTMVRISAMNMFMHGF 253

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            S    +++     G+   +D    + F   L+NPPF      D+  ++KE  +      
Sbjct: 254 NS---PNIAYRDSLGTIPDEDK---ESFDLILANPPFAG--SVDESNLDKELTS------ 299

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L K     +LF+    + L +    GGRAA+++    LF   +      IR+ L+EN
Sbjct: 300 ---LGKTKKTELLFINRFLSLLRI----GGRAAVIVPEGVLF--GSTKAHKAIRKELVEN 350

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             ++AI+ LP+  F   T ++T +   +   ++        +   ++    R+   KR  
Sbjct: 351 QKLDAIIKLPSGAFKPYTGVSTAILCFTRTDSKANDD----VWFYEVLADGRSLDDKRTE 406

Query: 444 I 444
           +
Sbjct: 407 L 407


>gi|114568715|ref|YP_755395.1| N-6 DNA methylase [Maricaulis maris MCS10]
 gi|114339177|gb|ABI64457.1| N-6 DNA methylase [Maricaulis maris MCS10]
          Length = 508

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 147/438 (33%), Gaps = 75/438 (17%)

Query: 38  FTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
              +R L+       +   R  Y        D ++                         
Sbjct: 35  LMFIRLLDVNETRDEKHQNRTGYEFKRRFGPDEQNLRWNEFRHLGGDEML-------VRV 87

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           R+ +  ++   S    + F +F        ++K  LL K     + + L           
Sbjct: 88  RDGVFPHLRKSSPTG-SSFAEF-MKDAQLMIQKPSLLVKAVSIVNDLPLT----EGDTKG 141

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +        F TPR ++ L   +L           P     + DP+CGT
Sbjct: 142 DLYEYLLSKLTTAGIN--GQFRTPRHIIKLMVDML----------EPKPTDRISDPSCGT 189

Query: 217 GGFLTDAMNHVADCG---------------------------SHHKIPPILVPHGQELEP 249
           GGFL + M ++                                H       + HG + + 
Sbjct: 190 GGFLVNVMEYLLRAYTSPEAVIKETDPETGKTETLYPGDQLEGHWDHIKGDMFHGFDFDA 249

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
               +    +++  ++ +P       +    T +      + F   L+NPPF  K   D 
Sbjct: 250 SMLRIAAMNLMLHGVD-NPDIHYQDTLSGSFTDNFQASATEGFDVILANPPF--KGSLDY 306

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           + V     +           K     +LFL+ +   L+     GGR+A ++    LF   
Sbjct: 307 EDVHPNLLSA---------VKTKKTELLFLVLILRMLKP----GGRSATIVPDGVLF--G 351

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINAT 428
           + +  + +R+ L++ + +EA+++LP+ +F     ++T + + S          V   +  
Sbjct: 352 SSTAHTALRKKLIDQNQLEAVISLPSGVFKPYAGVSTGILVFSKGGETR---DVFFYDVE 408

Query: 429 DLWTSIRNEGKKRRIIND 446
               S+ ++   R   +D
Sbjct: 409 GDGFSLDDKRDPRPDEDD 426


>gi|83746140|ref|ZP_00943194.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum UW551]
 gi|207741830|ref|YP_002258222.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609]
 gi|83727106|gb|EAP74230.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum UW551]
 gi|206593214|emb|CAQ60141.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 116/358 (32%), Gaps = 56/358 (15%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
               +            D  F+     +    LL K+ +    I LH       V   +Y
Sbjct: 98  FLRALGDTDPVCGRHLRDIRFT-----MPTPALLAKVVQQLDAIPLH----RRDVRGAVY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ R           F TPR +V     L            P    TL DP  GTG F
Sbjct: 149 DALLGRIPLVG--QGGRFHTPRHIVRFMVELT----------RPDPSDTLCDPAAGTGSF 196

Query: 220 LTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           L  A  ++                    + HG E++     +    +L+  +E    RD 
Sbjct: 197 LAAAGEYLRREHPGLLHDARQSVHFHHGMFHGYEIDRAMLRIGSMNLLLHGVEGPDLRD- 255

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                  +    D      +   L++PPF    +      +  H+            +  
Sbjct: 256 -----HDALAPTDANEAGAYSLVLAHPPFTGDVDHGSVDPDLLHR-----------VRTR 299

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LFL    + L+     GGRAA+++    LF   +G     +RR L+EN  +E ++ 
Sbjct: 300 KAELLFLARCLHLLKP----GGRAAVIVPDGVLF--GSGLAHRTLRRMLVENHRLEGVIK 353

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           LP  +F     I T + + +   T    G    +   DL     +       +  + +
Sbjct: 354 LPAGVFRPYAGIGTAILLFTRTDT----GGTGHVWFYDLRADGFSLDDPHTPLLPEDQ 407


>gi|330978665|gb|EGH77946.1| N-6 DNA methylase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 328

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 30/276 (10%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     +++    L ++ +          ++      ++YE L+++   +   GA  + T
Sbjct: 77  FFKAQNKIQDPAKLSRLVQLIDAESWI--SLGADTKGDLYEGLLQKNAEDTKSGAGQYFT 134

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHH 234
           PR ++    A +           P  ++ + DP CGTGGF   A N +   G     +  
Sbjct: 135 PRALIETIVACV----------RPEPMKIIADPACGTGGFFLGAYNWLTRPGATLNKAQK 184

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +       HG E+   T  +C+  + +  +      D    + +   L  +     +  Y
Sbjct: 185 EFLRDKTFHGNEIVSNTRRMCLMNLFLHNV---GELDGEPLVARSDALITE--PKLKVDY 239

Query: 295 CLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPPFGKK        E  E K              S+  + FL H+ + L++     
Sbjct: 240 VLANPPFGKKSSMTISNEEGDEDKEALTYERQDFWETTSNKQLNFLQHIVSMLKV----D 295

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           G+AA+VL  + LF G AG    +IRR LL+N  +  
Sbjct: 296 GKAAVVLPDNVLFEGGAGE---KIRRKLLDNCDVHT 328


>gi|224368579|ref|YP_002602742.1| HsdM1 [Desulfobacterium autotrophicum HRM2]
 gi|223691295|gb|ACN14578.1| HsdM1 [Desulfobacterium autotrophicum HRM2]
          Length = 503

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 142/433 (32%), Gaps = 64/433 (14%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                   ++K  LL         + L           ++YE+L+ +  +        F 
Sbjct: 108 YMKDAQLMIQKPQLLASAVTLIGDLPLD----RGDTKGDLYEYLLGKLTTAGIN--GQFR 161

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------- 230
           TPR ++ +   +L           P    T+ DP CGT GFL   M ++ +         
Sbjct: 162 TPRHIIRMMVDIL----------DPKPDETVADPACGTAGFLVSVMEYLLENYTSKEAVI 211

Query: 231 ---------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
                              K     + HG + +     + V  +L+  ++S P       
Sbjct: 212 THDTGEKTFPGDKLEAHQWKHITHGMFHGFDFDITMLRISVMNLLLHGIDS-PTIHYQDT 270

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +          F    F   L+NPPF       K +++ E  +  L        K     
Sbjct: 271 LSNNFPEKFPNFAEDGFDVILANPPF-------KGSLDFEDVHPSL----LSKVKTKKTE 319

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +LF+  +   L+L    GGR+A ++    LF   +      +R+ L+E + +E +++LP+
Sbjct: 320 LLFVTLILKMLKL----GGRSATIVPDGVLF--GSSKAHVALRKALVEENQLEGVISLPS 373

Query: 396 DLF-FRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQIL 453
            +F     ++T + I +      +   V   +   D ++      K  +    D   +  
Sbjct: 374 GVFKPYAGVSTAILIFTKG---GKTDDVFYYDLTADGFSLDDKRVKVEKNDIPDVIERWK 430

Query: 454 DIYVSRENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           +    ++  K  +            +  +        + ++      +  +   K     
Sbjct: 431 NKDPQKDTDKTQKFFFVSKDEIKANKYDLSINRYKEIVYEEDEYEPPKDILARMKDLEKE 490

Query: 512 QSFWLDILKPMMQ 524
               +D L+ M+ 
Sbjct: 491 ILADMDELEGMLG 503


>gi|332299058|ref|YP_004440980.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
 gi|332182161|gb|AEE17849.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
          Length = 509

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 137/399 (34%), Gaps = 46/399 (11%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           SD+ KA+        +   ++    L ++    + I+     +     ++ YE L++   
Sbjct: 114 SDDPKALIVREFMGESQNYMKDGVKLRQLVNEIADIDFDDAGIK-HDFNDFYETLLKGL- 171

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TPR +       +           P +   + D  CGTGGFL +A++H+
Sbjct: 172 QNGGKATGEFYTPRAITKFICDHV----------DPKIGERVADFACGTGGFLAEAISHL 221

Query: 228 ADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                  K    +    +G E +   + +    ML+  +++                  +
Sbjct: 222 MAQAKSPKDITTIQNSIYGIEWKQLPYMLATTNMLLHDIDNPDIVHGDGLALN----VLN 277

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           L    +++  L NPPFG            E    +L  F P     S+ + LF+  +   
Sbjct: 278 LQPKDKYNCILMNPPFGG-----------EFNKSDLQNF-PDDLASSESADLFVARIIYC 325

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L       GR  +VL    LFN         +++ L+    +  I+ LP+ +F   T+I 
Sbjct: 326 L----EKDGRCGLVLPDGLLFNSDNSK--VNLKKKLMTECNLHTIIRLPSSVFAPYTSIN 379

Query: 405 TYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSREN-- 461
           T L            GK + I    +          K   I  +  + + + + +R    
Sbjct: 380 TNLLFFDK------TGKTEEIWFYRMDMPEGVKHFNKTNPIKREDMKCVDEWWNNRVEIA 433

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            +       +TF  ++          F LD  G    E 
Sbjct: 434 DEKESETSTQTFKAKKYTFAEIEERGFDLDLCGYPEEED 472


>gi|282878166|ref|ZP_06286963.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
 gi|281299744|gb|EFA92116.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
          Length = 503

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 139/381 (36%), Gaps = 46/381 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E       + Y +         ++    G     T +  LS + +T   
Sbjct: 33  MLFLKVYDEK-ENDWELDDDDYKSIIPEECRWRNWAHDDGSGNALTGDDLLSFVNNTLFV 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 I   +   +       F      ++    L ++     G+ L  D         
Sbjct: 92  KLKNIEITPNTP-IREAIVKTTFEDANQYMKDGVQLRQVLNVIDGLNLG-DYEESHAFGE 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S     + +F TPR +      ++          +P +   + D  CGTG
Sbjct: 150 IYETILKEMQSAG--SSGEFYTPRALTEFMAEIV----------NPQIGEKMADFACGTG 197

Query: 218 GFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GF+T  +  +      +  +        G E +   + +CV  +L+  ++       +  
Sbjct: 198 GFITSWLGELDKKVKTAEDRKEYNQSVFGIEKKQFPYMLCVTNLLLHGID-------TPL 250

Query: 276 IQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   ++L+KD+       +F   L NPP+G   + D  +              P   + S
Sbjct: 251 VFHDNSLTKDVLNYTDEDKFDVVLMNPPYGGNEKSDVKS------------HFPSDMRSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF++ +  +L+      GRAA+++    LF   A + +  I+  LL +  +  I+ 
Sbjct: 299 ETADLFMVLIMYRLK----KNGRAAVIVPDGFLF--GADNTKIAIKTKLLRDFNLHTIIR 352

Query: 393 LPTDLFF-RTNIATYLWILSN 412
           LP  +F   T+IAT +    N
Sbjct: 353 LPGSIFAPYTSIATNILFFDN 373


>gi|146319106|ref|YP_001198818.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 05ZYH33]
 gi|145689912|gb|ABP90418.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 05ZYH33]
          Length = 487

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 139/390 (35%), Gaps = 49/390 (12%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++ +         ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDFN-SPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L          +P +  T+ D  CGTGGFLT  +NH+   
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLGQQ 210

Query: 231 GSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +          G E +   H + V  + +  ++       +   +      +D   
Sbjct: 211 RKTSEDVQKYTQAVFGIEKKAFPHLLAVTNLFLHEIDDPKIIHGNTLEKN----VRDYTE 266

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   + NPPFG              +   +    P   + S+ + LF+  +  +L+ 
Sbjct: 267 DEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETADLFMAVIMYRLK- 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR  ++L    LF       ++ +++ L+E   +  I+ LP  +F   T I T +
Sbjct: 314 ---ENGRVGVILPDGFLF---GEGVKTRLKQKLVEEFNLHTIIRLPHSVFAPYTGIHTNI 367

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                 K  E     +L +  + + +       R     D    + + + +R+      +
Sbjct: 368 LFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQE-----I 417

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           L+   +  +  +      +++  D+ G  +
Sbjct: 418 LEGNFYKSKSFRPDELASLNYNFDQCGFPK 447


>gi|294792926|ref|ZP_06758072.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
 gi|294455871|gb|EFG24235.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
          Length = 492

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/465 (16%), Positives = 156/465 (33%), Gaps = 65/465 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-T 96
              L+          +   E  +        +    +   ++  + S  +L+     N  
Sbjct: 34  MLFLK-------VYNAKELEWEMNEDNYLSIIPEECRWMNWAHDDKSGKALTGDALLNFI 86

Query: 97  RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            N L   +     +     K       F+     ++   LL ++      I+   D    
Sbjct: 87  DNTLFPTLKRLPVDVNTPIKKSIVQTTFADANNYMKDGVLLRQVINVIDDIDFS-DYDES 145

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +IYE +++   S     + +F TPR V     A++          +P +   + D 
Sbjct: 146 HAFGDIYETILKELQSAG--SSGEFYTPRAVTDFMAAMI----------NPQVGEVMADF 193

Query: 213 TCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFL   +  +         +       +G E +   + + +  +L+  +++    
Sbjct: 194 ACGTGGFLISWLKELHKKVETVADEEAYSSSIYGIEKKQFPYMLAITNLLLHDVDTPRIF 253

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  ++       D     +F   L NPP+G   + D  +              P    
Sbjct: 254 HDNSLVK----DVLDYTDKDKFDVILMNPPYGGSEKNDVKS------------HFPADLA 297

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GRAA++L    LF     + +  I++ LL    +  I
Sbjct: 298 SSETADLFMSVIMYRLK----NQGRAAVILPDGFLFGTD--NAKVNIKKKLLNEFNLHTI 351

Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQ 448
           + LP+ +F   T+I T +    N       G+ +      L          K + +  + 
Sbjct: 352 IRLPSSVFSPYTSITTNVLFFDN------TGETKETWIYRLDMPEGYKHFSKTKPMKLEH 405

Query: 449 RRQILDIYVSR---ENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
              +++ + +R   E   F +        YR+  +      +  L
Sbjct: 406 FEPVINWWNNRTEIEEEGFDK-----AKKYRKEDLENKYNYNIDL 445


>gi|253991410|ref|YP_003042766.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782860|emb|CAQ86025.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica]
          Length = 544

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 165/454 (36%), Gaps = 83/454 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K       + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIIKPSLLTKAVDMIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETVCDPACGTGGFLATSYEYLLEKYSSLESVHS 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E +P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVE-EPD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + Q  + +    +   F+  L+NPPF          +++E  +  L      + 
Sbjct: 278 IHYQDTMSQSFSANFPQASKNAFNLILANPPFTGS-------LDEEDTDPTL----LAMV 326

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K     +LFL  +   L++    GGR+A ++    LF   +      +R+ L+E++ +EA
Sbjct: 327 KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GSSKAHQSLRKILVEDNQLEA 380

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP+ +F     +AT + I +        G+   +   DL     +   KR  I D+ 
Sbjct: 381 VINLPSGVFKPYAGVATAILIFTKG------GQTNEVWFYDLQNDGYSLDDKRHPIKDND 434

Query: 449 RRQILDIYV-----------SRENGKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGL 495
              ++  +            +    KF+ +L  +        V    R   +F++ K  +
Sbjct: 435 LPHLIASWKHYRKLKGMPVDNFIGEKFNNLLKQQYSEGIDETVDYQDRTQSAFVVTKADI 494

Query: 496 ARLEADITWRKLSP-LHQSFWLDILKPMMQQIYP 528
           A  + D++  +    ++Q+   +  K +++++  
Sbjct: 495 AAQKYDLSINRYKEVVYQTEQHEDPKVILKRLKD 528


>gi|257437917|ref|ZP_05613672.1| putative type I restriction-modification system, M subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257199577|gb|EEU97861.1| putative type I restriction-modification system, M subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 510

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 140/418 (33%), Gaps = 68/418 (16%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                +  +    +L KI      +  H D     +  ++YE+++ +  S        F 
Sbjct: 134 YMDDAMFLIPTPQVLQKIITGLEDLYTH-DIADLDMQGDLYEYMLLKLSSAGRN--GQFR 190

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ +  +   L+           P     + DP CGT GFL  +  ++           
Sbjct: 191 TPKHIRDMMVELV----------QPTPDDFICDPACGTAGFLVSSAQYLRAHYEDSMTSE 240

Query: 239 ILVPH------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G +++     +    +++  +        +  I    ++SK      ++
Sbjct: 241 QWQHFAGPMFTGFDMDRTMLRISAMNLMLHSI-------TNPEIDYKDSVSKQNSICSKY 293

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             CL+NPPF       K  V+ E  N +L      +       +LFL      L+     
Sbjct: 294 TICLANPPF-------KGTVDAESINDDL----KAVTNTKKTELLFLALFLRMLKT---- 338

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILS 411
           GGR A ++    LF   +      IR+ L+EN  + A++++P+ +F     ++T + + +
Sbjct: 339 GGRCACIVPDGVLF--GSSKAHQSIRKELIENHQLRAVISMPSGVFKPYAGVSTAVLVFT 396

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI------LDIYVSRENGKFS 465
                   G    +   D+     +   KR  + ++    I      LD    R+  + S
Sbjct: 397 KTGA----GGTDKVWFYDMKADGFSLDDKRTEVKENDIPDIIARFQNLDAETDRKCTEQS 452

Query: 466 RMLD-------------YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             +               +      + V  P     + D   L  +E      +L  +
Sbjct: 453 FFVPKEEIAANGYDLSINKYKETEYVPVEYPSTTEILADLHEL-EMEITKGLAELEKM 509


>gi|148998187|ref|ZP_01825656.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|168482752|ref|ZP_02707704.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168490596|ref|ZP_02714739.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492671|ref|ZP_02716814.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC3059-06]
 gi|168576583|ref|ZP_02722457.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae MLV-016]
 gi|221231345|ref|YP_002510497.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225854061|ref|YP_002735573.1| type I restriction enzyme [Streptococcus pneumoniae JJA]
 gi|225858347|ref|YP_002739857.1| type I restriction enzyme [Streptococcus pneumoniae 70585]
 gi|307067140|ref|YP_003876106.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|147755830|gb|EDK62874.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|172043562|gb|EDT51608.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183574880|gb|EDT95408.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183577008|gb|EDT97536.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577709|gb|EDT98237.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae MLV-016]
 gi|220673805|emb|CAR68307.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225720338|gb|ACO16192.1| type I restriction enzyme [Streptococcus pneumoniae 70585]
 gi|225722751|gb|ACO18604.1| type I restriction enzyme [Streptococcus pneumoniae JJA]
 gi|306408677|gb|ADM84104.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|332203680|gb|EGJ17747.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368]
          Length = 487

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 165/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSIMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L          +P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 452


>gi|253752154|ref|YP_003025295.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|253753980|ref|YP_003027121.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|251816443|emb|CAZ52079.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|251820226|emb|CAR46647.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|292558742|gb|ADE31743.1| Type I restriction enzyme EcoEI M protein [Streptococcus suis GZ1]
 gi|319758541|gb|ADV70483.1| type I restriction-modification system M protein [Streptococcus
           suis JS14]
          Length = 487

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 139/390 (35%), Gaps = 49/390 (12%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++ +         ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDFN-SPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L          +P +  T+ D  CGTGGFLT  +NH+   
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLGQQ 210

Query: 231 GSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +          G E +   H + V  + +  ++       +   +      +D   
Sbjct: 211 RKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEIDDPKIIHGNTLEKN----VRDYTE 266

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   + NPPFG              +   +    P   + S+ + LF+  +  +L+ 
Sbjct: 267 DEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETADLFMAVIMYRLK- 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR  ++L    LF       ++ +++ L+E   +  I+ LP  +F   T I T +
Sbjct: 314 ---ENGRVGVILPDGFLF---GEGVKTRLKQKLVEEFNLHTIIRLPHSVFAPYTGIHTNI 367

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                 K  E     +L +  + + +       R     D    + + + +R+      +
Sbjct: 368 LFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQE-----I 417

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           L+   +  +  +      +++  D+ G  +
Sbjct: 418 LEGNFYKSKSFRPDELASLNYNFDQCGFPK 447


>gi|227541296|ref|ZP_03971345.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182847|gb|EEI63819.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 533

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/460 (15%), Positives = 151/460 (32%), Gaps = 71/460 (15%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TGS  +  + IW        A  +    +   +         L+ L+      +  + + 
Sbjct: 3   TGSLKNQVDRIWDTFWAGGIANPIT-VVEQFTY------LLFLKHLD----KQQDEIEKW 51

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNA-KAIFE 116
            L          +    AG         +L          N++  ++ +  D   K+ F 
Sbjct: 52  RLLGQDREDIFPAGAIEAGVPLRWRDLLALKDKKRVEAFENHVFPFLTANEDYPYKSPFG 111

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +F       +++    L  + +   G+E         ++ ++YE+++ +  ++ +     
Sbjct: 112 NF-LKRAQFQIDNPATLASVMQRIDGLEFTNK----DMLGDLYEYVLSKLATQGTN--GQ 164

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           F TP  ++ L   L+           P     + DP  GT GFL  A   + D       
Sbjct: 165 FRTPTHIIDLMVKLI----------QPKPTEKIIDPAAGTAGFLVGANEWIKDHHKSDLR 214

Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         G + +     +    + +         D      Q S    +    
Sbjct: 215 DERIRNKFKEEGLTGHDSDATMVRLAAMNLFLHGF------DNPSISYQDSLQPLENTPT 268

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   L+NPPF      D +++++E       +            +LF+      L L 
Sbjct: 269 GVFDVVLANPPFSG--SVDANSIDQELTTLFTTKKT---------ELLFVARFLTLLRL- 316

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GGRAA+++    LF   +      +R+ L+++  ++A++ LP+  F   + ++T + 
Sbjct: 317 ---GGRAAVIVPEGVLF--SSTKAHKALRKELVDHQSLDAVIKLPSGTFKPYSGVSTAIL 371

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
             +             +   ++     +   KR  + D+ 
Sbjct: 372 CFTRADDAATDS----VWFYEVRADGYSLDDKRTPLLDEN 407


>gi|260580903|ref|ZP_05848727.1| LOW QUALITY PROTEIN: type I restriction-modification system, M
           subunit [Haemophilus influenzae RdAW]
 gi|260092392|gb|EEW76331.1| LOW QUALITY PROTEIN: type I restriction-modification system, M
           subunit [Haemophilus influenzae RdAW]
          Length = 305

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 104/305 (34%), Gaps = 44/305 (14%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDNAKAIFED 117
             +K  GY  Y  S+   +   +  +  NL + +                  + K +F D
Sbjct: 5   DAIKTKGYFIY-PSQLFKNVAANAGSNPNLNTDLKQIFTDIENSATGFPSEQDIKGLFAD 63

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           FD +S        +K   L  + K  + ++    +     +  + YE+LI  + +   + 
Sbjct: 64  FDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAYEYLISNYAANAGKS 123

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP+ V  L   + +    ++ K        +YDP  G+G  L  A     +    
Sbjct: 124 GGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLLLQAKKQFDEHIIE 175

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-F 292
                     GQE+   T+ +    M +  +  D       +I  G+TL +  F   + F
Sbjct: 176 EG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIALGNTLMEPQFGDNKPF 224

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPN 351
              +SNPP+  KW    D      +     RF P     +     L L     KL     
Sbjct: 225 DAIVSNPPYSVKWAGSDDPTLINDE-----RFAPRRRACTKIQSGLCLYFTCVKLSFSKR 279

Query: 352 GGGRA 356
             G  
Sbjct: 280 PRGDC 284


>gi|17548113|ref|NP_521515.1| type I restriction enzyme M protein [Ralstonia solanacearum
           GMI1000]
 gi|17430420|emb|CAD16893.1| probable typeIrestriction enzyme m protein [Ralstonia solanacearum
           GMI1000]
          Length = 481

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 91/435 (20%), Positives = 153/435 (35%), Gaps = 61/435 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLAF 62
            T     L + IW  A    G     +  + +     L+RL+   +     A R +  A 
Sbjct: 2   MTADLQRLVDRIWD-AFHTEGIADPVEIIEQLTCLLCLKRLDDLHVLARHLARRSRQPAA 60

Query: 63  GGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            G+ +          +S + T S  ++  + ST         +      A    ED  F+
Sbjct: 61  SGARLPFREDQDDLRWSVFRTLSPQAMFDVVSTR-GIPFLQALGDNDPAAGRHMEDIRFT 119

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                L    LL +I +    I LH       V   +YE L+ R    ++  +  F TPR
Sbjct: 120 -----LTTPALLARIVQLLDAIPLH----RRDVRGAVYESLLGRIA--LTRRSGAFHTPR 168

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHH 234
            +V     L            P    TL DP  GT GFL  A  ++              
Sbjct: 169 HIVRFMVELT----------RPDPSDTLCDPAAGTCGFLAAAGEYLRREHPGLLHDARQS 218

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--F 292
                 + HG E++     +    +L+  +E          ++ G  L+      +   +
Sbjct: 219 AHFHHGMFHGHEIDRAMLRIGSMNLLLHGVEG-------AGLRHGDALAG-AHADETGAY 270

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L++PPF          V++   + +L R    L +     +LFL      L      
Sbjct: 271 SLILTHPPFTGD-------VDRGGADPDLLR----LVRTRKTELLFLARCLRLLRP---- 315

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILS 411
           GGRAA+++    LF   +G     +RR L+E+  +E ++ LP  +F     I T + + +
Sbjct: 316 GGRAAVIVPDGVLF--GSGIAHRTLRRMLVEDHRLEGVIKLPGGVFRPYAGIGTAILLFT 373

Query: 412 NRKTEERRGKVQLIN 426
              T    G V   +
Sbjct: 374 RTDTGG-TGHVWFYD 387


>gi|312902303|ref|ZP_07761510.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
 gi|310634274|gb|EFQ17557.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
          Length = 435

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 162/461 (35%), Gaps = 60/461 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAE 175
           +  +   E     YK+ +  S +   EL             ++     F +E S  +G +
Sbjct: 6   NELLGVDESFHASYKLIEILSSLSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKK 65

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  ++ +A+ +L            G  R+  D   GTGG               + 
Sbjct: 66  QDFTPDGIIRVASGVL------------GPTRSNADICAGTGGLTIK----------RYA 103

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD------------LSKNIQQGSTLS 283
             P    + +E         +  + IR + +                 L+K+ +  S   
Sbjct: 104 ENPDAQFYCEEFSDRALPFLLFNLAIRNINAVVLHGDSLSREFKAIYKLTKSTEFSSIEI 163

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +    + NPP+   W   K+ +E+E  +         L   S     FL+   
Sbjct: 164 VDEVPATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGI 218

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           ++L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I
Sbjct: 219 HQLK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDI 271

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T L +L   +  +    +  I+A+  +   +       ++ D+   +IL+++ SR+   
Sbjct: 272 PTVLLVLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQSRKAVD 324

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           KFS ++           +  P R     +   +  L   +   K +    +     L  M
Sbjct: 325 KFSSIVTIEELKENDFNLNIP-RYIDTFEPETVKPLSEIMAEMKQTEQEIAKNNIELAKM 383

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
           M  +           +   S  ++ +  K ++        A
Sbjct: 384 MNDLVGTTPEADRQIKEFASFFSEHVGYKDNQKPKRRIKRA 424


>gi|253755915|ref|YP_003029055.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
 gi|251818379|emb|CAZ56207.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
          Length = 487

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 140/390 (35%), Gaps = 49/390 (12%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++ +         ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDFN-SPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L          +P +  T+ D  CGTGGFLT  +NH++  
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLSQQ 210

Query: 231 GSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +          G E +   H + V  + +  ++       +   +      +D   
Sbjct: 211 RKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEIDDPKIIHGNTLEKN----VRDYTE 266

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   + NPPFG              +   +    P   + S+ + LF+  +  +L+ 
Sbjct: 267 DEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETADLFMAVIMYRLK- 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR  ++L    LF       ++ +++ L+E   +  I+ LP  +F   T I T +
Sbjct: 314 ---ENGRVGVILPDGFLF---GEGVKTRLKQKLVEEFNLHTIIRLPHSVFAPYTGIHTNI 367

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                 K  E     +L +  + + +       R     D    + + + +R+      +
Sbjct: 368 LFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQE-----I 417

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           L+   +  +  +      +++  D+ G  +
Sbjct: 418 LEGNFYKSKSFRPDELASLNYNFDQCGFPK 447


>gi|148990031|ref|ZP_01821285.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924557|gb|EDK75644.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP6-BS73]
          Length = 467

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 164/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTNDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 452


>gi|332292347|ref|YP_004430956.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170433|gb|AEE19688.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 552

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 173/493 (35%), Gaps = 102/493 (20%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS---------- 84
           I     ++RL+  LE  R    E       S  D E    +   S+              
Sbjct: 34  ITYLLFIKRLDE-LESKRERDAEWNGEEYESKFDGEYTPWIDESSYRPKPDTTEEEKAEL 92

Query: 85  -EYSLSTLGSTNTRNNLESYIAS---------FSDNAKAIFEDFD---------FSSTIA 125
            +     L     +    S+  S         F +N     +D +           + + 
Sbjct: 93  FKKREEALAPRPKKELKWSFFKSMPADDMLLHFRNNVFPHIKDLNDETSSFTKYMKNAVF 152

Query: 126 RLEKAGLLYKICKNFSGI--ELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            ++K  LL +  K    I  E+  D          +  ++YE L++   +        F 
Sbjct: 153 IIQKPSLLVEAVKKVDEIFIEIEEDAKDGKQSFQDIQGDVYEMLLKEIATAG--KNGQFR 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++ L   L            P +   + DP CGT GFL  A N++       K P 
Sbjct: 211 TPRHLIKLLAELT----------EPKLGHKIADPACGTSGFLLGAYNYILSDLVRKKEPE 260

Query: 239 ILV--------------------------PHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           +L                            +G +++     + +  +++  ++       
Sbjct: 261 LLQIDEDGFERATISSVLTEENKQILNDSFYGFDIDTTMVRLGLMNLMMHGID------- 313

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           + +I+   TLSK+      +   L+NPPF  K       ++K   N +LG          
Sbjct: 314 NPHIEYKDTLSKNYNESGNYDIVLANPPFTGK-------LDKGDVNPDLG------IDTG 360

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LFL  ++  L      GG+AA+++    LF   A   +   R  LL ++ +EA+++
Sbjct: 361 STELLFLARISKMLRA----GGKAAVIIPEGVLF--GASKAQKATREILLRDNQLEAVIS 414

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP   F   T + T + + +  + + ++     +    L     +    RR + ++    
Sbjct: 415 LPAGAFKPYTGVKTAILVFTKVEEDSKKWHTDKVWFYVLENDGYSLDDNRRKLKENPLPL 474

Query: 452 ILDIYVSRENGKF 464
           +   Y++R++ ++
Sbjct: 475 VKSNYIARKSAEY 487


>gi|288573654|ref|ZP_06392011.1| type I restriction-modification system, M subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569395|gb|EFC90952.1| type I restriction-modification system, M subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 248

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 17/215 (7%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M+    +         +L+  +W+ A  L G     DF   I P    +RL    +   +
Sbjct: 1   MSSKNENNNSVDLDIGTLSGHLWETANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYT 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS----D 109
              E+       +++   F +   +       +      S N  + L+  +        D
Sbjct: 61  VALEE----SDGDVEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQANPD 116

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
               IF D  +++   RL  A LL  + ++FS + L  +     ++   YE+LI++F   
Sbjct: 117 TLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFADL 174

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            ++ A +F TPR VV L   +L          +P 
Sbjct: 175 TNKKAGEFYTPRSVVALMVRILAPKAGETIPAAPR 209


>gi|307268427|ref|ZP_07549805.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|306515234|gb|EFM83771.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 230

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 20/229 (8%)

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  KW  D   ++    +    R+G  L   S     FL+H    L+      G  
Sbjct: 1   MNPPYSAKWSADASFLD----DSRFNRYGK-LAPKSKADFAFLLHGYYHLK----DSGTM 51

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + IL   +  
Sbjct: 52  AIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFGTSIPTTVIILKKNRDN 108

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
                V  I+A+  +T  +N    +  +  +   +I+  Y+ R++  K++ +  +     
Sbjct: 109 R---DVLFIDASKEFTKGKN----QNKLAPEHIDKIVSTYIERQDVEKYAHVATFEEIVE 161

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
               +  P  +    ++  +  +  +   +  +   +    ++L  +  
Sbjct: 162 NDYNLNIPRYVDTFEEEPPVDLVALNNEIKSTNQEIKKVEAELLAMLDD 210


>gi|257092509|ref|YP_003166150.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045033|gb|ACV34221.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 516

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 124/338 (36%), Gaps = 53/338 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  +  A LL K+      + +           ++YE+++ +  S        F T
Sbjct: 121 MQDARFTIPSAALLAKVVDLLDAVPME----DRDTKGDVYEYMLGKIASAG--QNGQFRT 174

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------S 232
           PR ++ L   L           +P     + DP CGT GFL  A   +            
Sbjct: 175 PRHIIRLMVELT----------APQPSDVICDPACGTAGFLVTAGEVLRQRHPNLLHDAG 224

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKR 291
             +     + HG + +     +    ML+  +E       + +I+   +L++D     ++
Sbjct: 225 RREHFHHRMFHGFDFDNTMLRIGSMNMLLHGVE-------NPDIRYRDSLAQDHAGEEEK 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  A +              + K     +LFL      L+    
Sbjct: 278 YTLLLANPPFAGSLDYENTARDLLQ-----------IVKTKKTELLFLALFLRLLKP--- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGRAA+++    LF   + +   ++RR L+E+  ++A+V LP  +F     ++T + + 
Sbjct: 324 -GGRAAVIVPDGVLF--GSSTAHKQLRRMLVEDQKLDAVVKLPGGVFKPYAGVSTAILLF 380

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +        G    +   D+     +   KR  +  + 
Sbjct: 381 TK----TNSGGTDQVWFYDVQADGWSLDDKRTPLLPED 414


>gi|325125904|gb|ADY85234.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 479

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 142/381 (37%), Gaps = 45/381 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S +++ L+    S+          P+ +  L   +L         E      +++DP   
Sbjct: 131 SFLFDELLENCYSDH-RMLYSGDAPKQMRKLIAEIL-------NSEVKTEKVSIFDPVAM 182

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K    +  +G+E   +   +    M+I  ++     D   N
Sbjct: 183 SGSLLLTLKE---------KFQSKVELYGEEFSSDLFRLLKMNMVIHGIDIQTIHD---N 230

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             +G  L  + F    +F      PPF   W+ D + +  +    E+G     LP  S  
Sbjct: 231 FVRGDFLKDEEFDANSKFDIIPMTPPFS-SWDADPELL-NDPCFSEVG----VLPPKSKA 284

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              +++     L    +  G  A++L +  LF     + E EIR++LLE   I A+++LP
Sbjct: 285 DYAYVLRGLQHL----SEDGTMAVMLPTGALFRS---ATEGEIRKYLLEKQNIHAVISLP 337

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
                   I T L I   +K+     K+  I+A+           K+  + ++   +IL 
Sbjct: 338 QGARNYMAIYTVLLIFKQKKS----DKILFIDASRDGVK-NATRLKQNFLTEEGFTKILH 392

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           IY +RE   ++SR++           +  P      +D     +++ + T   LS   Q 
Sbjct: 393 IYRNREEVDRYSRLVSLDEIRENDYNLNIP----RYIDTFSEKKIDVEATISSLS-AKQR 447

Query: 514 FWLDILKPMMQQIYPYGWAES 534
                 K M++ +  +   E+
Sbjct: 448 VIEKSKKEMIELLNKFDTPEA 468


>gi|332202402|gb|EGJ16471.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 487

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 164/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMP-IRKTIVKSAFEDANNYMKNGVLLRQVINAIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTNDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 452


>gi|225860525|ref|YP_002742034.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229258|ref|ZP_06962939.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255150|ref|ZP_06978736.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502306|ref|YP_003724246.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727295|gb|ACO23146.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237901|gb|ADI69032.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390256|gb|EGE88597.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
          Length = 487

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 165/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L          +P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 452


>gi|194336531|ref|YP_002018325.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309008|gb|ACF43708.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 553

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 75/510 (14%), Positives = 166/510 (32%), Gaps = 103/510 (20%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAF----------GGSNIDLESFVKVAGYSFYNTS 84
           I     ++R++   +  +++       +                  SF      S    S
Sbjct: 34  ITYLLFMKRMDDQDQEKQASAEWAGEPYTSKFKGVWIPQEYRGKSNSFNYAIDKSTLRWS 93

Query: 85  EYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
           E+         T+ +  +  Y+   +  A++ F      + +  + K  LL +  K    
Sbjct: 94  EFKHMQAEEMLTHVQTKVFPYLKDMNG-AESQFSH-HMKNAVFIIPKPSLLVEAVKTVDE 151

Query: 143 IELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +   +        +  ++YE L+    S        F TPR ++ +   L+    
Sbjct: 152 IFEVMEKDSNEKGQAFQDIQGDVYEFLLSEIASAG--KNGQFRTPRHIIKMMADLV---- 205

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------------------------- 230
                  P +  T+ DP CGTGGFL  A  ++                            
Sbjct: 206 ------EPKLGHTIADPACGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSVG 259

Query: 231 -GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K        G +++     + +  +++  ++          I    TLSK     
Sbjct: 260 LTEQAKSILGKTLFGYDIDSTMVRLALMNLMMHGID-------EPEIDYKDTLSKSFTEE 312

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   ++NPPF          ++K   N             +   +LF+ ++   L+  
Sbjct: 313 SCYDIIMANPPFTGS-------IDKGDINESF------TLSTTKTELLFVENIYRLLK-- 357

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GG A +++    LF   +G     +R+ L++   ++A++ +P+ +F     ++T + 
Sbjct: 358 --KGGTACVIVPQGVLF--GSGGAFKALRKLLVDRCDLKAVITMPSGVFKPYAGVSTSIL 413

Query: 409 ILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--- 459
           + +       + T+     V   +      S+ ++  K+    D     I++ Y  R   
Sbjct: 414 LFTKVWGPLDKVTKPATEHVWFYDMQSDGYSLDDKRSKQEGFGD--LLDIVENYKRRSVE 471

Query: 460 -ENGKFSRML-----DYRTFGYRRIKVLRP 483
            +  +  +       +    G   + + R 
Sbjct: 472 HDTDRTQKFFFVPRIEIEGEGGYDLSLSRY 501


>gi|182683454|ref|YP_001835201.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CGSP14]
 gi|182628788|gb|ACB89736.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CGSP14]
          Length = 487

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/468 (15%), Positives = 164/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSIMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L          +P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+    + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCDFPKEEEEI 452


>gi|148983890|ref|ZP_01817209.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924037|gb|EDK75149.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799576|emb|CBW32129.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae OXC141]
          Length = 496

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 170/473 (35%), Gaps = 52/473 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     K I +   F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMPIRKTIIKSA-FEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQ--QGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            +   G+TL K   +    ++F   + NPPFG              +   +    P   +
Sbjct: 258 EKNVHGNTLEKNVREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELR 305

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I
Sbjct: 306 SSETADLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTI 358

Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + LP  +F   T I T +      K  E     +L +  D + +      K + +  +  
Sbjct: 359 IRLPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHF 413

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
             + D + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 414 NPVRDWWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 461


>gi|15902493|ref|NP_358043.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae R6]
 gi|116516554|ref|YP_815962.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae D39]
 gi|148993496|ref|ZP_01822987.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|149003727|ref|ZP_01828572.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005623|ref|ZP_01829362.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149012612|ref|ZP_01833609.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149026394|ref|ZP_01836532.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168485629|ref|ZP_02710137.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1087-00]
 gi|168488198|ref|ZP_02712397.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP195]
 gi|225856228|ref|YP_002737739.1| type I restriction enzyme [Streptococcus pneumoniae P1031]
 gi|237649414|ref|ZP_04523666.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821513|ref|ZP_04597358.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|307126723|ref|YP_003878754.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae
           670-6B]
 gi|322387161|ref|ZP_08060771.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|15458017|gb|AAK99253.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus pneumoniae R6]
 gi|116077130|gb|ABJ54850.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae D39]
 gi|147758289|gb|EDK65290.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762563|gb|EDK69523.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763417|gb|EDK70354.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147927865|gb|EDK78886.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929277|gb|EDK80277.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|183571120|gb|EDT91648.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572897|gb|EDT93425.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP195]
 gi|225724994|gb|ACO20846.1| type I restriction enzyme [Streptococcus pneumoniae P1031]
 gi|306483785|gb|ADM90654.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae
           670-6B]
 gi|321141690|gb|EFX37185.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|332074323|gb|EGI84799.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17570]
 gi|332076346|gb|EGI86809.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA41301]
 gi|332076951|gb|EGI87413.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17545]
 gi|332204533|gb|EGJ18598.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA47901]
          Length = 487

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 164/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 452


>gi|169833672|ref|YP_001694009.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397534|ref|YP_002037177.1| type I restriction-modification system subunit M [Streptococcus
           pneumoniae G54]
 gi|303254229|ref|ZP_07340340.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae BS455]
 gi|303260622|ref|ZP_07346586.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP-BS293]
 gi|303263067|ref|ZP_07348998.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265334|ref|ZP_07351243.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS397]
 gi|303267090|ref|ZP_07352960.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS457]
 gi|303269335|ref|ZP_07355107.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS458]
 gi|168996174|gb|ACA36786.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194357201|gb|ACF55649.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae G54]
 gi|301801397|emb|CBW34083.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae INV200]
 gi|302598832|gb|EFL65867.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae BS455]
 gi|302635767|gb|EFL66271.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638212|gb|EFL68683.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP-BS293]
 gi|302641107|gb|EFL71482.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS458]
 gi|302643352|gb|EFL73629.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS457]
 gi|302645106|gb|EFL75344.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS397]
          Length = 487

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 164/468 (35%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPKELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+ G  + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCGFPKEEEEI 452


>gi|282932148|ref|ZP_06337601.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281303727|gb|EFA95876.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 203

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 32/234 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIY 159
              I   +++ + I      S  + R      L  +    S I +      +  ++  +Y
Sbjct: 1   MESIEKDNESLRGILSKNYESPDLDR----SRLGGVVDLISDINVGGKEAKERDILGRVY 56

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+ +++F S   +   +F TPR VV     ++                T+YDP CG+GG 
Sbjct: 57  EYFLQKFASNEKKNGGEFYTPRSVVKTLVEMVEPFKG-----------TVYDPCCGSGGM 105

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +   V +   H      L  +GQE  P T  +    + IR +      D +    Q 
Sbjct: 106 FVQSEQFVQE---HQGQIADLSVYGQESNPTTWKLAKLNLAIRGI------DNNFGAHQA 156

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            T + DL  G  F Y L+NPPF  K    +       K  +  R+  G+P   +
Sbjct: 157 DTFTNDLHKGTHFDYILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGN 203


>gi|260579046|ref|ZP_05846945.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|300933495|ref|ZP_07148751.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
 gi|258602797|gb|EEW16075.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 242

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 12/229 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + ++  A  L G ++   +  VI+P T++RRLECALE T+ AV   Y      +     
Sbjct: 10  VDHVFSIANSLRGTYQADKYKDVIIPMTIIRRLECALEETKDAVCTVYEQ--DDSTPDAI 67

Query: 72  FVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFED---FDFSSTIAR 126
             +V+GY FYNTS Y+L  L +       NL++Y+ +FS N + I +     DF + I +
Sbjct: 68  LKQVSGYPFYNTSRYTLEKLLAEPAQLHRNLKTYLEAFSPNIRMILDKNEGLDFFTQIDK 127

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + K   L  + + FS ++L P+ + +  M  ++E LIRRF       A D  TPR+VV L
Sbjct: 128 MHKGSRLTGVVRKFSELDLAPERINNVAMGYMFEELIRRFSENA--EAGDHYTPREVVRL 185

Query: 187 ATAL-LLDPDDALFKESPGMI--RTLYDPTCGTGGFLTDAMNHVADCGS 232
              L L +  + LF+    +     + D +    G+L +    V   G+
Sbjct: 186 LVRLGLAEGSEDLFEPGKNINVADQMGDCSSALSGWLVEHDPCVRQRGT 234


>gi|317051876|ref|YP_004112992.1| N-6 DNA methylase [Desulfurispirillum indicum S5]
 gi|316946960|gb|ADU66436.1| N-6 DNA methylase [Desulfurispirillum indicum S5]
          Length = 554

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 163/476 (34%), Gaps = 92/476 (19%)

Query: 35  ILPFTLLRRLECALEPTRSAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSL-- 88
           I     ++RL+  L+  + A  E     Y +          +    G   Y   + +L  
Sbjct: 34  ITYLLFMKRLDE-LDQKKQADAEWTGEPYTSKFAGQWIPPEYRDKEGADNYAVDKRTLRW 92

Query: 89  ---STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143
                + +     +++S +  F  +      +F     + +  + K  LL +  K    I
Sbjct: 93  SEFKRMQAEEMLQHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPKPALLVEAVKTIDEI 152

Query: 144 E--LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              +  D+         +  ++YE L+    +        F TPR ++ L   L+     
Sbjct: 153 FEIMEKDSQEKGQAFQDIQGDVYEMLLSEIATAG--KNGQFRTPRHIIKLMADLV----- 205

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNH-VADCGSHHKIPPILV-------------- 241
                 P +   + DP CG+GGFL  A  + V +         +                
Sbjct: 206 -----RPQLGHRIADPACGSGGFLLGAYQYIVTELAKKAGAKDLQSDEDGFVRTSVAAGL 260

Query: 242 -----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G +++     + +  +++  ++         NI    TLSK      
Sbjct: 261 TEKAQAILQASLFGYDIDATMVRLGLMNLMMHGID-------EPNIDYKDTLSKSYLEEA 313

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   ++NPPF          ++K   N  L          +   +LF+ ++   L+   
Sbjct: 314 EYDIVMANPPFTGS-------IDKGDINENLS------LSTTKTELLFVENIYRLLK--- 357

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GG A +++    LF   +G     +R+ L+E   ++A++ +P+ +F     ++T + +
Sbjct: 358 -KGGTACVIVPQGVLF--GSGGAFKTLRQMLVERCDLKAVITMPSGVFKPYAGVSTAILL 414

Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +       + T+     V          S+ ++  K+    D   + I+  + +R
Sbjct: 415 FTKVWGPKDKVTQPATEHVWFYEMQADGYSLDDKRSKQEGYGD--LQDIVAKFHAR 468


>gi|227487583|ref|ZP_03917899.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092401|gb|EEI27713.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 533

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 151/460 (32%), Gaps = 71/460 (15%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TGS  +  + IW        A  +    +   +         L+ L+      +  + + 
Sbjct: 3   TGSLKNQVDRIWDTFWAGGIANPIT-VVEQFTY------LLFLKHLD----KQQDEIEKW 51

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNA-KAIFE 116
            L          +    AG         +L          N++  ++ +  D   K+ F 
Sbjct: 52  RLLGQDREDIFPAGAIEAGVPLRWRDLLALKDKKRVEAFENHVFPFLTAQEDYPYKSPFG 111

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +F       +++    L  + +    +E         ++ ++YE+++ +  ++ +     
Sbjct: 112 NF-LKRAQFQIDNPATLASVMQRIDDLEFTNK----DMLGDLYEYVLSKLATQGTN--GQ 164

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           F TP  ++ L   L+           P     + DP  GT GFL  A   + D       
Sbjct: 165 FRTPTHIIDLMVKLI----------QPKPTEKIIDPAAGTAGFLVGANEWIKDHHKSDLR 214

Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         G + +     +    + +   ++           Q S    +    
Sbjct: 215 DERIRNKFKEEGLTGHDSDATMVRLAAMNLFLHGFDNPNI------SYQDSLQPLENTPT 268

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   L+NPPF      D +++++E       +            +LF+      L L 
Sbjct: 269 GVFDVVLANPPFSG--SVDANSIDQELTTLFTTKKT---------ELLFVARFLTLLRL- 316

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GGRAA+++    LF   +      +R+ L+++  ++A++ LP+  F   + ++T + 
Sbjct: 317 ---GGRAAVIVPEGVLF--SSTKAHKALRKELVDHQSLDAVIKLPSGTFKPYSGVSTAIL 371

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
             +             +   ++     +   KR  + D+ 
Sbjct: 372 CFTRADDAATDS----VWFYEVRADGYSLDDKRTPLLDEN 407


>gi|113476047|ref|YP_722108.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
 gi|110167095|gb|ABG51635.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
          Length = 493

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/504 (13%), Positives = 168/504 (33%), Gaps = 74/504 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+      + AV+EK         +   F + +    ++  +   +       R
Sbjct: 35  LLFIKQLD-----QQEAVKEKKARRLKKVKEKLIFSEASQSCRWSHFKELATDKMFEAVR 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +    +I +     +           +  +    LL  + +    + L           +
Sbjct: 90  DEAFPFIKTLGGTLENNAYSRHMKDAVFMIGSPALLANVVQQIDSLPLD----DRDTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  +        F TPR ++ +   L+           P     + DP  GT 
Sbjct: 146 LYEYMLSKLNTAG--QNGQFRTPRHIIKMIVDLMT----------PQPNDVVCDPAFGTA 193

Query: 218 GFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRRLES 266
           GFL     H+      +    +              HG + +     +    ++   +E+
Sbjct: 194 GFLVAVAEHLQQLKDENGSLVLNAPGNKEHFYQHMFHGFDFDATMLRIGSMNLMQHGIEN 253

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 ++   + +         + F   L+NPPF    +K   A +             
Sbjct: 254 ------AQIEARDALSEDHAGVEEMFTLVLANPPFKGSIQKSSIAKDLTK---------- 297

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +   +   +LFL      L+     GGRAA+++    LF   +     ++R+ L+E   
Sbjct: 298 -IVNTTKTELLFLALFLRLLKT----GGRAAVIVPDGVLF--GSSKAHKDVRKMLVEEHK 350

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++ ++++P+ +F     ++T + + +        G    +   D+     +   KR+ + 
Sbjct: 351 LDGVISMPSGVFKPYAGVSTAILMFTKTGA----GGTDFVWFCDMQADGFSLDDKRQPVE 406

Query: 446 DDQRRQILDIYVSR----ENGKFSRML-----DYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           ++    I   +  R    +  + S+       + +  GY  + + R   +++      + 
Sbjct: 407 ENDISNITKSWQKRNPKKDKDRNSKTFFIPKDEIKDNGY-DLSINRYKEVAY----EEIE 461

Query: 497 RLEADITWRKLSPLHQSFWLDILK 520
                +   KL  L      D+ +
Sbjct: 462 YEHPLVILGKLRELEDEINQDLDE 485


>gi|117920472|ref|YP_869664.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117612804|gb|ABK48258.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 513

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 178/495 (35%), Gaps = 96/495 (19%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVI--LPFTLLRRLECALEPTRSAVR 56
           TG   S  N +W+       A  L           VI  + F +  RL   L   R   R
Sbjct: 3   TGKLKSDINKLWEEFWTGGIANPL----------TVIEQITFLMYARLLD-LHEQRDEKR 51

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
            K           ++   +  + F +  + ++  L       + ++     S     +F 
Sbjct: 52  AKLRGIDFKRRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGS-----LFG 106

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +F        ++K  L+    +    + L           ++YE+L+ +  +        
Sbjct: 107 EF-MKDAQCMIQKPTLMESAVEMIDKLPLE----DSDTKGDLYEYLLSKLTTAGIN--GQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---- 232
           F TPR ++     +L           P +   + DP+CGT GFLT A  ++ +  +    
Sbjct: 160 FRTPRHIIRAMVEML----------DPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEG 209

Query: 233 --------------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
                                     H       + HG + +     +    +++  + +
Sbjct: 210 VHTETVVGDNGEAQQVKIYSGDLLVEHRDYVNTDMFHGFDFDATMLRIAAMNLVMHGV-T 268

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +P       +    T      +   +  C++NPPF       K ++++E  +  + R   
Sbjct: 269 EPDVHYQDTLSGSFTERFPNQSKDAYTLCIANPPF-------KGSLDEEDVDPAILR--- 318

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+  +   L+     GG+ AI++    LF   + +   ++R+ ++EN+ 
Sbjct: 319 -MVKTKKTELLFVAQILRLLK----NGGKTAIIVPDGVLF--GSSNAHQQLRQHIIENNE 371

Query: 387 IEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++A+V+LP+ +F     ++T +  ++      R   V   +      S+ +   KR  I 
Sbjct: 372 LQAVVSLPSGVFKPYAGVSTAILFITKG---SRTDHVWFYDVQADGMSLDD---KRTPIK 425

Query: 446 DDQRRQILDIYVSRE 460
           D+    ++  + +R+
Sbjct: 426 DNDLPDLVAKFKARD 440


>gi|89899860|ref|YP_522331.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89344597|gb|ABD68800.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 516

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 52/337 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  +    LL K+      + +           ++YE+++    S        F T
Sbjct: 117 MKDARFTIPTPALLAKVVDLLDHVPME----DRDTKGDLYEYMLSNIASAG--QNGQFRT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++ L   +           +P     + DP  GT GFL     ++ +          
Sbjct: 171 PRHIIRLMVEMT----------APTAKDVICDPASGTCGFLVATGEYLREKHPEILRNPA 220

Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-R 291
             +     + HG + +     +    M +  ++       + +I+   +L++D    + R
Sbjct: 221 SREHFHHGMFHGFDFDNTMLRIGSMNMALHGVD-------NPDIRYQDSLAQDHAGDEGR 273

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  A +              + K     +LFL      L+    
Sbjct: 274 YSLILANPPFAGSLDYENTAKD-----------LLAIVKTKKTELLFLALFLRLLKP--- 319

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGRAA+++    LF   +     E+RR ++E   ++A+++LP+  F     ++T + + 
Sbjct: 320 -GGRAAVIVPDGVLF--GSSKAHKELRRMIVEEQKLDAVISLPSGAFKPYAGVSTAILLF 376

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +   +      V   +      S+  + K++ +++DD
Sbjct: 377 TKTNSGG-TDNVWFYDMKADGWSL--DDKRQPLLSDD 410


>gi|229824144|ref|ZP_04450213.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271]
 gi|229786498|gb|EEP22612.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271]
          Length = 424

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/446 (19%), Positives = 154/446 (34%), Gaps = 66/446 (14%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE--G 173
           E+++  S +  L  +     I   F  +E              ++     F  E  +   
Sbjct: 14  ENYELPSKLLDLMLSNQRENIFNQFLELEQDLS----------FDWFTDYFQQEHGDRDK 63

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
            +   TP++V HL  ++             G   ++ D   GTGG      N   +    
Sbjct: 64  LKQDFTPKEVAHLVNSI------------SGPATSVADICAGTGGLTIKKWNEQREA--- 108

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------DLSKNIQQGST 281
                    + +E       + +  + IR + ++                L    +  + 
Sbjct: 109 -----ECFYYMEEFASRAIPILIFNIAIRNMNAEIVHCDALTQEVFGIYRLIPGDRFSTV 163

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                 TG+  F   + NPP+   W  DK  +     +G       G+   S     F++
Sbjct: 164 EKVTERTGRTDFDAVIMNPPYSLTWSGDKSLINDPRFSG------YGVAPKSKADYAFIL 217

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G    +L    LF G A   E EIR  L+    +E ++ LP +LF  
Sbjct: 218 HGLAILK----ETGTLVAILPHGVLFRGAA---EGEIRTELIRRRQLETVIGLPDNLFLN 270

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I   L IL  ++ +E    V  I+A+  +      GK +  ++D+    IL  Y  R 
Sbjct: 271 TSIPVALLILKKKREDE---DVYFIDASKEFIK----GKAQNNLSDEHVDNILTAYRLRR 323

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           N  KFS +            +  P  +     +  +   E   +  +     Q+  L++L
Sbjct: 324 NIDKFSNLAKPHEIESNDYNLNIPRYVDTFEPEPIIPMQELLDSLIQTEREIQTTELELL 383

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEA 545
             M Q +     A++  KE ++  E 
Sbjct: 384 NFMRQLVGTTPEAQNQQKECVEKFEE 409


>gi|315506709|ref|YP_004085596.1| n-6 DNA methylase [Micromonospora sp. L5]
 gi|315413328|gb|ADU11445.1| N-6 DNA methylase [Micromonospora sp. L5]
          Length = 898

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 60/365 (16%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            + ++  P+   D     +++HL+ +       G + F TPR VV L   +L        
Sbjct: 100 IALLDHIPEGDRDGE-RELFDHLLDQ---APRYGKQHFGTPRPVVTLMVEML-------- 147

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
             +P    ++ DP CG GG L  A ++V      +   P    +G E       +    +
Sbjct: 148 --APSPEDSVADPWCGPGGLLAAASDYVRRTAGEN---PRQKFYGAERNQALMRLAGMNL 202

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           L+  +                T    L    RF   ++NPPFG + + +           
Sbjct: 203 LLHGVGEAEL-----------TQRDPLEAPGRFSVVMTNPPFGGRRDIESVPAG------ 245

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                  GL + +   +L L+  +  L    + GG+AA+++  S LF   + S   E+RR
Sbjct: 246 -----LAGLVRTTKTELLLLVAASRLL----DAGGKAAVIVPQSVLF--GSSSAHIEVRR 294

Query: 380 WLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            L+E   ++A+V LP   F     ++  L + +  K + R G V   +A           
Sbjct: 295 LLVEEHRLDAVVILPPGTFLPYAGLSAALLLFT--KADSRTGDVWFYDAAGDGR------ 346

Query: 439 KKRRIINDDQRRQILDIYVSR---ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             R  ++DD    +L ++  R   E  + S ++  R        +  P R   + +K  L
Sbjct: 347 --RDPLSDDHVADVLKLWERRAGGERTERSFLVPRREIAEHGYDLS-PQRYRRLHEKARL 403

Query: 496 ARLEA 500
            R +A
Sbjct: 404 MREKA 408


>gi|154175026|ref|YP_001408735.1| Sec-independent protein translocase protein TatC [Campylobacter
           curvus 525.92]
 gi|153793168|gb|EAT99402.2| Sec-independent protein translocase protein TatC [Campylobacter
           curvus 525.92]
          Length = 489

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 128/378 (33%), Gaps = 50/378 (13%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           +       F      ++   LL ++    + +    +         IYE +++   S  +
Sbjct: 105 RQAIVKKAFEDNNNYMKDGVLLRQVINVINELNF-ENFKERHAFGEIYETILKSLQSAGN 163

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A +F TPR V      ++           P +   + D  CGTGGFLT A+  +    
Sbjct: 164 --AGEFYTPRAVTDFMAKMI----------KPKIGERVADFACGTGGFLTSALKELDSQI 211

Query: 232 SHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  I     +G E +     +    +L+  +++      +   +      +D    
Sbjct: 212 QTADEREIYKDSVYGIEKKALPFLLSATNLLLHDIDNPQIYHDNALEK----DIRDYAPE 267

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   L NPP+G              +   +    P   + S+ + LF+  +  +L+  
Sbjct: 268 DKFDVILMNPPYGGS------------EKDNIKSNFPIELRSSETADLFMNVIMARLKFK 315

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
               GRAA++L    LF     + +  I+  LL    +  IV LP  +F   T+I T + 
Sbjct: 316 ----GRAAVILPDGFLFGTD--NAKVAIKTKLLNEFNLHTIVRLPRSVFAPYTSITTNIL 369

Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENG----- 462
             +  +   +      I    L     +    K + +  +    ++  + +RE       
Sbjct: 370 FFNTSEPTNK------IWFYRLDMPEGQKNFSKTKPMKLEHFTPVISWWNNREEINIDGF 423

Query: 463 KFSRMLDYRTFGYRRIKV 480
             S+         R   +
Sbjct: 424 DKSKCFTINEIKERNYSL 441


>gi|158333869|ref|YP_001515041.1| type I restriction modification system M subunit [Acaryochloris
           marina MBIC11017]
 gi|158304110|gb|ABW25727.1| type I restriction modification system M subunit, putative
           [Acaryochloris marina MBIC11017]
          Length = 381

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 136/410 (33%), Gaps = 58/410 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
               +  +  A +L  +      IE+           ++YE+++ +  S        F T
Sbjct: 1   MKDALFMMPTARVLANVVDQLDAIEM----ADRDTKGDLYEYMLGKIASAG--QNGQFRT 54

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++ L   L           +P     + DP CGT GFL  A  ++ D  S       
Sbjct: 55  PRHIIKLMVELT----------APTPKDVICDPACGTAGFLIAASEYLMDHHSDVIYKDA 104

Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G + +     +    ML+  +E   + D+          +      + 
Sbjct: 105 ESRRRFNEETFSGYDFDSTMLRIGSMNMLLHGVE---KPDIRYKDSLAEADAAAGDDEEA 161

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  A +              + K     +LF             
Sbjct: 162 YSLILANPPFAGSLDYETTAKDLLK-----------VVKTKKTELLF----LTLFLRVLQ 206

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGRAA+++    LF   +      +R+ L+E+  ++ I+++P+ +F     ++T + + 
Sbjct: 207 TGGRAAVIVPDGVLF--GSSKAHKALRKMLVEDQKLDGIISMPSGVFKPYAGVSTAIVLF 264

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSRENG------K 463
           +        G    +   D+ T   +   KR    D      IL  + +RE        +
Sbjct: 265 TK----TNSGGTDQVWFYDMQTDGFSLDDKRTEQPDKSDLPDILTRWQAREAEAERKRTE 320

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            S ++           +        + +          +  ++L+ L + 
Sbjct: 321 QSFLVPREEIVENDYDLSINRYKEVVYEAVEYDPP--GVILKRLAKLEKE 368


>gi|291540211|emb|CBL13322.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 269

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 107/271 (39%), Gaps = 25/271 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
              + I+E+LI+ +  +  + A ++ TP  +  +   +++               T+YDP
Sbjct: 19  DFFATIFEYLIKDYNKDFGKYA-EYYTPHSIASIIARIMVPEGVQNV--------TVYDP 69

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  +    + + +         I     + L        +   L   +  D     
Sbjct: 70  AAGSGTLVLALAHEIGESNCTIYTQDISQKSNEFLRLNLILNNLVHSLGHVVHGDTLLSP 129

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
               +Q +          +F Y +SNPPF   +  ++D +  +          P +P  +
Sbjct: 130 QHLNRQKN-------GLMKFDYIVSNPPFNVDFSDNRDTLAGDIYKERFWAGVPNVPNKN 182

Query: 333 DGSML----FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             SM     FL H+   ++     GGRAA+V+ +  L  G       +IR  ++E+ ++ 
Sbjct: 183 KDSMAIYQMFLQHIIFSMK---ENGGRAAVVVPTGFLTAG--TRIPKKIRERIVEDRMLR 237

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            +V++P+++F  T     +  L N K+  R+
Sbjct: 238 GVVSMPSNIFATTGTNVSVLFLDNSKSMSRQ 268


>gi|256962776|ref|ZP_05566947.1| N-6 DNA methylase [Enterococcus faecalis HIP11704]
 gi|256953272|gb|EEU69904.1| N-6 DNA methylase [Enterococcus faecalis HIP11704]
          Length = 438

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 163/461 (35%), Gaps = 60/461 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAE 175
           +  +   E     YK+ +  S     EL             ++     F +E S  +G +
Sbjct: 9   NELLGVDESFHASYKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKK 68

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  ++ +A+ +L            G  R+  D   GTGG               + 
Sbjct: 69  QDFTPDGIIRVASGVL------------GATRSNADICAGTGGLTIK----------RYA 106

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD------------LSKNIQQGSTLS 283
             P    + +E         +  + IR + +                 L+K+ +  S   
Sbjct: 107 ENPDAQFYCEEFSDRALPFLLFNLAIRNINAVVLHGDSLSREFKAIYKLTKSTEFSSIEI 166

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D  +  +    + NPP+   W   K+ +E+E  +         L   S     FL+   
Sbjct: 167 VDEVSATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGI 221

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           ++L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I
Sbjct: 222 HQLK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDI 274

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T L +L   +  +    +  I+A++ +   +       ++ D+   +IL+++ SR+   
Sbjct: 275 PTVLLVLKKNRLNK---DILFIDASNEFKKEKAW----NVLEDEHVAKILEVFQSRKAVD 327

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           KFS ++           +  P R     +   +  L   +   K +    +     L  M
Sbjct: 328 KFSSVVTIEELKENDFNLNIP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKM 386

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
           M  +           +   S  ++ +  K ++        A
Sbjct: 387 MNDLVGTTPEADRQIKEFASFFSEHVGYKDNQKPKRRIKRA 427


>gi|325685548|gb|EGD27637.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 491

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 163/475 (34%), Gaps = 55/475 (11%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  +   E       + Y +     +    +          T +  LS + +     
Sbjct: 36  LFLKVYDDC-EKDWEITEDDYQSIIPEGMQWREWAVDNKDGNALTGDELLSFV-NNELLP 93

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L++   S     K       F      ++   LL ++       +   D     + ++I
Sbjct: 94  GLKNITVSSETPIKQAIVKDAFIDANNYMKNGVLLRQVINVIDEQDFT-DPQDRHMFNDI 152

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++++  S  +    +F TPR +       L           P +   + D  CGTGG
Sbjct: 153 YEGILKQLQSAGNS--GEFYTPRALTDFIAETL----------QPKLGEKMADFACGTGG 200

Query: 219 FLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           FL   +N + +       +        G E + + + + V  +L+  + +      +   
Sbjct: 201 FLISTLNVLKEQIKSVEDQEKYNNSVFGIEKKGQPYILAVTNLLLHDVSNPDIVHGNSLE 260

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           ++      +     +F   + NPPFG              +   + +  P   + S+ + 
Sbjct: 261 KKVD----EYTEKDKFDIIMMNPPFGGS------------ELPVIKQNFPTDLQSSETAD 304

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+  +  +L+     GGR  ++L    LF          +++ LL +  +  I+ LPT 
Sbjct: 305 LFMALIMYRLK----EGGRVGLILPDGFLFGDDGSK--LSLKKRLLTDFNLHTIIRLPTS 358

Query: 397 LFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND------DQR 449
           +F   T+IAT +      K  E+    +L +  + +         +    D      ++R
Sbjct: 359 IFAPYTSIATNILFFDKTKPTEKTWFYRL-DMPEGYKHFSKTRPMKLEHFDPVREWWNER 417

Query: 450 RQILD--------IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           ++I D         Y ++E  +    LD   F  +  +VL P ++          
Sbjct: 418 QEIQDKDGNYKSRAYTAKEIEENGYSLDLCGFPTKVEEVLPPEKLMAKYTAEREE 472


>gi|15900423|ref|NP_345027.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111657646|ref|ZP_01408378.1| hypothetical protein SpneT_02001156 [Streptococcus pneumoniae
           TIGR4]
 gi|14971982|gb|AAK74667.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 487

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/468 (15%), Positives = 163/468 (34%), Gaps = 51/468 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++ +         ++
Sbjct: 92  ELKELEITSNMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++       +  
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEIDDPKIVHGNTL 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +      ++    ++F   + NPPFG              +   +    P   + S+ +
Sbjct: 258 EKN----VREYTDDEKFDIIMMNPPFGGS------------ELETIKNNFPAELRSSETA 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    LF       ++ +++ L++   +  I+ LP 
Sbjct: 302 DLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGVKTRLKQKLVDEFNLHTIIRLPH 354

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +F   T I T +      K  E     +L +  D + +      K + +  +    + D
Sbjct: 355 SVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNPVRD 409

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + +RE      +L+ + +  +         +++ LD+    + E +I
Sbjct: 410 WWENREE-----ILEGKFYKSKSFTPSELAELNYNLDQCDFPKEEEEI 452


>gi|172039949|ref|YP_001799663.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171851253|emb|CAQ04229.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 524

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 138/422 (32%), Gaps = 64/422 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS--FYNTSEYSLSTLGSTN 95
              +R+L+      R A  +      G   D+            + N  E S  +     
Sbjct: 35  LLFMRQLDE-----RQANNDFQREALGVEPDIPDVFTEDQQHLRWRNLMEISDGSDRREV 89

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             N    +I +   +                +E    L ++ +    +E     +     
Sbjct: 90  IVNEAFPFIRNLGGSGFGR----HMRDASFGIENPATLLRVMEQVDALEFTNRDMS---- 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+++ +  S  +     F T   ++ L   L+           P     + DP CG
Sbjct: 142 GDLYEYMLSKLASSGTN--GQFRTTSHIIDLMVELM----------RPAPKHRVIDPACG 189

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A        +   +   +          G + +     +    M +   E   
Sbjct: 190 TAGFLVGAREWTRHHHADEFMDRRVSDWYTQRALTGFDFDSSMVRIAAMNMFMHGFED-- 247

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 NI    +L +     +  F   L+NPPF      D+ +++ E  N         
Sbjct: 248 -----PNISYRDSLQQVPEADREAFDIILANPPFAGSI--DESSLDPELAN--------- 291

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L       +LFL      L+     GGRAA+++    LF   +     EIR+ L++   +
Sbjct: 292 LISSKRTELLFLARFLTLLKP----GGRAAVIVPEGVLF--GSTKAHREIRKHLIDEQRL 345

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +A++ LP+  F   + ++T +       T   RG    +   ++     +   KR  + D
Sbjct: 346 DAVIKLPSGTFKPYSGVSTAILCF----TRTDRGSTDDVWFYEVTADGYSLDDKRTPLLD 401

Query: 447 DQ 448
             
Sbjct: 402 AN 403


>gi|262403985|ref|ZP_06080540.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC586]
 gi|262349017|gb|EEY98155.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC586]
          Length = 512

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 140/378 (37%), Gaps = 67/378 (17%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           + RNN+  + A    N  +    F   + +    ++ L        + + L    V    
Sbjct: 88  HLRNNVFPHFAKVELNG-SDIAHFMADADVEVRSESVLRA-AVDMVNDLPLDKSDVK--- 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE+L+ +  S        F TPR ++ +   ++                 + DP C
Sbjct: 143 -GDIYEYLLSKLSSAGIN--GQFRTPRHIIDMMVEMI----------DVQPTDVICDPAC 189

Query: 215 GTGGFLTDAMNHVADCGS----------------------HHKIPPILVPHGQELEPETH 252
           GT GFL+ +M ++    +                      +       +  G + +    
Sbjct: 190 GTAGFLSRSMEYLTRTHTSAESIYQDEDGNPVYTGDLLHEYQDHINTKMFWGFDFDNTML 249

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            V    ML+  + +    +++       +          F   L+NPPF  K   D+ +V
Sbjct: 250 RVSAMNMLLHGVSA---ANITYQDSLNKSFLGQPQEENFFDKILANPPF--KGSLDEQSV 304

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             +  +         + K     +LF+  +   L+L    GGR+A ++    LF   + S
Sbjct: 305 NPKVLS---------MVKTKKTELLFVALILRMLKL----GGRSATIVPDGVLF--GSSS 349

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              ++R+ L++++ +EA+++LP+ +F     ++T + I +   +      V   + T   
Sbjct: 350 AHQDLRKTLIDHNQLEAMISLPSGVFKPYAGVSTGILIFTKGGS---TDNVLFYDMTADG 406

Query: 432 TSIRNEGKKRRIINDDQR 449
            S+ +   KR  I D+  
Sbjct: 407 YSLDD---KRNPIKDNDI 421


>gi|312897853|ref|ZP_07757268.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359]
 gi|310621052|gb|EFQ04597.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359]
          Length = 432

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 146/430 (33%), Gaps = 70/430 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDF--MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           Y  ++  F  + ++        TP+ V+ +   +                  + D   G 
Sbjct: 46  YGGILAEFEEQSADRKNYMQDYTPQCVLDIVARIA-------------PGGNVRDVCAGI 92

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--------P 268
           GG      N              +  H +E      A  +  +L+    +          
Sbjct: 93  GGLSLTKYN----------TDKTIDLHLEEYSQNAIAFLLLNLLMAEAPATVVEKNVLTG 142

Query: 269 RRDLSKNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            +  +  ++ GS     +   +  ++   +SNPP+   W    D V  E   G       
Sbjct: 143 EKLNAYRVENGSIAQVPVPPLEDWKYDTVISNPPYSMPW----DPVMDERFEG------Y 192

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S     F++   + L       G A  +L    LF G+A   E +IRR L++ +L
Sbjct: 193 KLAPKSKADYAFVLDGIHSL----EDNGTAVYILPHGVLFRGQA---EEDIRRELIDRNL 245

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++A+V LP  LF  T+I   + +   +K  +R+  +  I+A   +  ++N+      +  
Sbjct: 246 LDAVVGLPGKLFANTDIPVCVLVF--KKNRDRKD-ILFIDAQKEFKKLKNK----NQMTV 298

Query: 447 DQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   ++++ Y +R E  K+SR +           +  P  +     +     LE      
Sbjct: 299 EHVTRVINTYATRSEQDKYSRCVSIEEIRDNDYNLNIPRYIDNFELEPIPDALEMAKALN 358

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
           +++   +    ++   + Q +      E   K  I   E           F+ +   A  
Sbjct: 359 QINEEAEQVGREVAVMLRQLVCTNPEDEKEFKAFIVEME----------KFLTSSTGAVT 408

Query: 566 RKDPRADPVT 575
            ++  A    
Sbjct: 409 VQEEEAVIAK 418


>gi|227892723|ref|ZP_04010528.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227865500|gb|EEJ72921.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 516

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 141/401 (35%), Gaps = 66/401 (16%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV---------------PDRVMSNIYEHLI 163
                I +L     L K+      I    D +                  V  ++YE+L+
Sbjct: 118 YMGDAIFKLPTPEFLAKVVDELDDIYATMDKIRKNEIQSTGKNERFDKSDVQGDLYEYLL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  +        F TPR ++ +   L+          +P     + DP CGT GFL  A
Sbjct: 178 SKLSTAGRN--GQFRTPRHIIKMMVELM----------NPTPDDKIADPACGTSGFLVTA 225

Query: 224 MNHVADCGSHHK----------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             ++ +     K               +  G +++     +    M+   +         
Sbjct: 226 AEYLKNDREKEKAIFYSKEKKAYYKSSMFTGYDMDRTMLRIGAMNMMTHGI-------TD 278

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NIQ   +LS        +   L+NPPF  K   D D V               + K   
Sbjct: 279 PNIQYKDSLSDQNIDADEYSLVLANPPF--KGSLDYDTVSDSLLK---------VCKTKK 327

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL      L++    GGR A ++    LF   +      IR+ L+E + +EA++++
Sbjct: 328 TELLFLTLFLRMLKI----GGRCACIVPDGVLF--GSSRAHKTIRKQLVEGNRLEAVISM 381

Query: 394 PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P+ +F     ++T + I +         KV   + T    S+ +   KR  +++D    I
Sbjct: 382 PSGVFKPYAGVSTAVLIFTKT-NHGGTDKVWFYDMTADGYSLDD---KRTKVDEDDIPDI 437

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           ++ + + +  K  +  D   F  ++  V     +S    K 
Sbjct: 438 INRFKNLDKEKDRKRTDKSFFVDKKEIVDNNYDLSINRYKE 478


>gi|22477129|gb|AAM97371.1| DNA methylase [Streptomyces collinus]
          Length = 393

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 41/298 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             + +  +R   ++ +EG+  F TP D+  L                P     + DP CG
Sbjct: 26  GPLLDQCLRDLSADQAEGSRYF-TPDDMARLMV----------GAAVPRDRHRVLDPVCG 74

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +GG L ++  +V +   +  + P +   G+E    T  V      +R + +         
Sbjct: 75  SGGLLVESHRYVRE---NVGLDPTMSLQGKEQHAHTSQVARMNFAVRGITA-------HV 124

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-----LGRFGPGLPK 330
              G +L+      +     L+N PF ++    +D  E++ +          R+    P 
Sbjct: 125 FPPGDSLADP--EPEPHDIILANLPFNQRDWAPEDKTERDVRRSPSPIPVDPRWPEESPS 182

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
               +  ++ H+A+ L       GRA  +++ S             +R  LL +DL+E +
Sbjct: 183 KGSANSAWIQHIAHALAPA----GRAVFLMADSV--ANSRQPVTRSVRERLLRDDLVECV 236

Query: 391 VALPTDLFFRTNIATYLWILSNRK-------TEERRGKVQLINATDLWTSIRNEGKKR 441
           +ALP  +F  +     LW+L+  K         +RR +V  INA   +  +     +R
Sbjct: 237 IALPPRVFGHSKAPACLWVLNKDKSARPGWGARDRRRQVLFINARRAFEPVPKSRARR 294


>gi|300933508|ref|ZP_07148764.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 315

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 29/239 (12%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   V     H      L   G E   +T  +    + +  L  D         +Q
Sbjct: 1   MFVQCAKFVERH--HESASRQLSVFGTEKTEDTVPLAKMNLALHGLSGDI--------RQ 50

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            ++  +D  +    F Y ++NPPF        D ++K+   G+  R   GLPK  +G+ L
Sbjct: 51  ANSYYEDPHSAVGAFDYVMANPPFNV------DKIKKDQLAGD-KRLPFGLPKADNGNFL 103

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++      L    +  GRA  V+++S    G AG  E EIR+ L+E+  ++ +VA+  + 
Sbjct: 104 WIQQFYAAL----SPEGRAGFVMANSA---GDAGYSEKEIRKQLIESGTVDVMVAISPNF 156

Query: 398 FFRTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           F+   +   LW L   K    R   V  I+A  ++   R   +  R    +Q   I +I
Sbjct: 157 FYTVTLPVTLWFLDKAKVGTPREDTVLFIDARHIF---RQIDRAHRDFTAEQIEFIANI 212


>gi|229523506|ref|ZP_04412911.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae bv. albensis VL426]
 gi|229337087|gb|EEO02104.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae bv. albensis VL426]
          Length = 512

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 139/378 (36%), Gaps = 67/378 (17%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           + RNN+  + A    N  +    F   + +    ++ L        + + L    V    
Sbjct: 88  HLRNNVFPHFAKVELNG-SDIAHFMADADVEVRSESVLRA-AVDMVNDLPLDKSDVK--- 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE+L+ +  S        F TPR ++ +   +L                 + DP C
Sbjct: 143 -GDIYEYLLSKLSSAGIN--GQFRTPRHIIDMMVEML----------DVQPTDVICDPAC 189

Query: 215 GTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPHGQELEPETH 252
           GT GFL+ +M ++                           +       +  G + +    
Sbjct: 190 GTAGFLSRSMEYLMRIHTSAESIYQDEDDNPVYTGDLLHEYQDHINTKMFWGFDFDNTML 249

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            V    ML+  + +    +++       +          F   L+NPPF  K   D+ +V
Sbjct: 250 RVSAMNMLLHGVSA---ANITYQDSLNKSFLGQPQEENFFDKILANPPF--KGSLDEQSV 304

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             +  +         + K     +LF+  +   L+L    GGR+A ++    LF   + S
Sbjct: 305 NPKVLS---------MVKTKKTELLFVALILRMLKL----GGRSATIVPDGVLF--GSSS 349

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              ++R+ L++++ +EAI++LP+ +F     ++T + I +   +      V   + T   
Sbjct: 350 AHQDLRKTLIDHNQLEAIISLPSGVFKPYAGVSTGILIFTKGGS---TDNVLFYDMTADG 406

Query: 432 TSIRNEGKKRRIINDDQR 449
            S+ +   KR  I D+  
Sbjct: 407 YSLDD---KRNPIKDNDI 421


>gi|77164668|ref|YP_343193.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|76882982|gb|ABA57663.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
          Length = 238

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 30/251 (11%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   ++NPPF             E +     RF  GLP  S G   F+ H+    E   
Sbjct: 2   KFDNVVANPPFSLDKWGA-----DEAEGDIYNRFWRGLPPKSKGDYAFISHMI---EAAV 53

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR A+V     LF G A   E  IRR L+E++L++A++ LP +LF  TNI   + I 
Sbjct: 54  AKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILIF 110

Query: 411 S----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----- 461
                     E R +V  I+A++ + S +N    +  + D    +I+ +Y    +     
Sbjct: 111 DCSREKGGVNEARKEVFFIDASNEYQSGKN----QNTLGDAHIHRIIQVYNEFRDSLIND 166

Query: 462 ------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                  KF+ +  +         +  P  +    ++  +          +L        
Sbjct: 167 QWSIINEKFAHVAGFEEIKENDFNLNIPRYVDTFEEEEEIDIQAVQREIEQLEAELAEVR 226

Query: 516 LDILKPMMQQI 526
             + + +   +
Sbjct: 227 GKMDRLLKDMV 237


>gi|257421715|ref|ZP_05598705.1| predicted protein [Enterococcus faecalis X98]
 gi|257163539|gb|EEU93499.1| predicted protein [Enterococcus faecalis X98]
          Length = 438

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 159/458 (34%), Gaps = 60/458 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAE 175
           +  +   E     YK+ +  S     EL             ++     F +E S  +G +
Sbjct: 9   NELLGVDESFHASYKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKK 68

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  ++ +A+ +L            G  R+  D   GTGG               + 
Sbjct: 69  QDFTPDGIIRVASGVL------------GATRSNADICAGTGGLTIK----------RYA 106

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD------------LSKNIQQGSTLS 283
             P    + +E         +  + IR + +                 L+K+ +  S   
Sbjct: 107 ENPDAQFYCEEFSDRALPFLLFNLAIRNINAVVLHGDSLSREFKAIYKLTKSTEFSSIEI 166

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +    + NPP+   W   K+ +E+E  +         L   S     FL+   
Sbjct: 167 VDEVPATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGI 221

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           ++L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I
Sbjct: 222 HQLK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDI 274

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T L +L   +  +    +  I+A+  +   +       ++ D+   +IL+++ SR+   
Sbjct: 275 PTVLLVLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQSRKTID 327

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           KFS ++           +  P R     +   +  L   +   K +    +     L  M
Sbjct: 328 KFSSVVTIEELKENDFNLNLP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKM 386

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           M  +           +   S  +  +  K ++      
Sbjct: 387 MNDLVGTTPEADRQIKEFASFFSGHVGYKDNQKPKRRI 424


>gi|77413781|ref|ZP_00789961.1| N-6 DNA Methylase family [Streptococcus agalactiae 515]
 gi|77160143|gb|EAO71274.1| N-6 DNA Methylase family [Streptococcus agalactiae 515]
          Length = 487

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 140/390 (35%), Gaps = 49/390 (12%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++ +         ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQVINVIDEVDFN-SPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L           P +  T+ D  CGTGGFLT  +N+++  
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------DPKLGETMADLACGTGGFLTSTLNYLSKQ 210

Query: 231 GSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +          G E +   H + V  + +  ++       +   +      ++   
Sbjct: 211 RKTSEDIQKYNQAVFGIEKKAFPHLLAVTNLFLHEIDDPKIIHGNTLEKN----VREYTD 266

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   + NPPFG              +   +    P   + S+ + LF+  +  +L+ 
Sbjct: 267 DEKFDLIMMNPPFGGS------------ELDTIKNNFPAELRSSETADLFMAVIMYRLK- 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
                GR  ++L    LF       ++ ++  L+E   +  I+ LP  +F   T I T +
Sbjct: 314 ---ENGRVGVILPDGFLF---GEGVKTRLKEKLVEEFNLHTIIRLPHSVFAPYTGIHTNI 367

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                 K  E+    +L +  + + +      K + +  +    + + + SRE      +
Sbjct: 368 LFFDKTKKTEQTWFYRL-DMPEGYKNF----SKTKPMKSEHFNPVREWWTSREE-----I 417

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           L+   +  +         +++  D+ G  +
Sbjct: 418 LEGNFYKAKSFTPSELADLNYNFDQCGFPK 447


>gi|90962730|ref|YP_536645.1| modification subunit [Lactobacillus salivarius UCC118]
 gi|90821924|gb|ABE00562.1| Modification subunit [Lactobacillus salivarius UCC118]
          Length = 465

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 165/498 (33%), Gaps = 71/498 (14%)

Query: 34  VILPFTLLRRLECALEPTRS------AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
            +L     + +   +            V++KY     +  D +  +      +++   Y 
Sbjct: 22  YVL-MAFYQSISQKVLRKFDKDGSILEVQKKYEESRETVQDAQFVIAPQDTYYHHYQMYK 80

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            +         +L + I   +   K IF+D   S++    E A         F  ++   
Sbjct: 81  ANKFEYVELVKSLYN-IEEKNPKLKNIFQDVRGSTSSLPSETA---------FEKVDSRN 130

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +          +E  +               T +++  L T L+    + +         
Sbjct: 131 EVS--------FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV--------- 173

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YDP  GT   L          G +         +GQ++  +     +  +++  ++ D
Sbjct: 174 SIYDPALGTASLLL---------GINQAALKENRYYGQDISTQAIKTAIMNVIVNDVDDD 224

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +  +TL+ +   G +    +S+PP   KW  D++       + +      G
Sbjct: 225 KFE-----FKNENTLANNWEFG-KVDIVVSDPPINMKWNVDRNL------SQDRRYRDYG 272

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +     F++   +KL    +  G   + +    LF    G+ E  IRR LLE+  I
Sbjct: 273 EMP-NKADWGFILDGIDKL----SDNGMMVVSVVQGTLFR---GAKEYNIRRKLLEDGKI 324

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            A++ LP +    T IAT L +      ++    V  INA+  +           I+ + 
Sbjct: 325 RAVIQLPGNTKLSTTIATCLLVFRKSSEDK---DVFFINASQEYEK----KGLENILTEA 377

Query: 448 QRRQILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+D +  ++   +FS M +Y         +     ++    K  L   E      K
Sbjct: 378 NVDKIVDTFNEKKEVQRFSHMANYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEK 437

Query: 507 LSPLHQSFWLDILKPMMQ 524
           L          +   M  
Sbjct: 438 LDEKLSQTDATLKNLMGD 455


>gi|270647276|ref|ZP_06222191.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270317229|gb|EFA28814.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 173

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 97/162 (59%), Gaps = 16/162 (9%)

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPKISD 333
           F G  F + LSNPP+GK W KD+  + K+       RF                 P+ SD
Sbjct: 13  FQGNHFDFMLSNPPYGKNWSKDQAYI-KDGNEVIDSRFKVTLPDYWGNEETLDATPRSSD 71

Query: 334 GSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           G +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+EAIV
Sbjct: 72  GQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLLEAIV 131

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  
Sbjct: 132 QLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRK 173


>gi|254433647|ref|ZP_05047155.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|207089980|gb|EDZ67251.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 244

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 30/251 (11%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   ++NPPF             E +     RF  GLP  S G   F+ H+    E   
Sbjct: 8   KFDNVVANPPFSLDKWGA-----DEAEGDIYNRFWRGLPPKSKGDYAFISHMI---EAAV 59

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR A+V     LF G A   E  IRR L+E++L++A++ LP +LF  TNI   + I 
Sbjct: 60  AKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILIF 116

Query: 411 S----NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----- 461
                     E R +V  I+A++ + S +N    +  + D    +I+ +Y    +     
Sbjct: 117 DCSREKGGVNEARKEVFFIDASNEYQSGKN----QNTLGDAHIHRIIQVYNEFRDSLIND 172

Query: 462 ------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                  KF+ +  +         +  P  +    ++  +          +L        
Sbjct: 173 QWSIINEKFAHVAGFEEIKENDFNLNIPRYVDTFEEEEEIDIQAVQREIEQLEAELAEVR 232

Query: 516 LDILKPMMQQI 526
             + + +   +
Sbjct: 233 GKMDRLLKDMV 243


>gi|57506133|ref|ZP_00372055.1| type I restriction-modification system M subunit [Campylobacter
           upsaliensis RM3195]
 gi|57015617|gb|EAL52409.1| type I restriction-modification system M subunit [Campylobacter
           upsaliensis RM3195]
          Length = 495

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 130/375 (34%), Gaps = 48/375 (12%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----------TNTRNNLESYIAS 106
           K   +       ++ +    Y           +              T   N L   + +
Sbjct: 34  KLYDYYEKEWTADNEMDGTEYHSIIPEHLRWESWAIGQKSPTGEPLLTFINNELFPTLKA 93

Query: 107 FSDN----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            +               F      ++   LL ++        +  +    + +  +YE  
Sbjct: 94  LNITESTPLNQSIVRQVFEDLNNYMKDGYLLREVINEIESSLVIHNRQDFKELCKVYESF 153

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++   S  +  A +F TPR +      +L          SP +  ++ D  CGTGGFL  
Sbjct: 154 LKTLQSAGN--AGEFYTPRAITEFMVEML----------SPKLGESVADLACGTGGFLIS 201

Query: 223 AMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           A + +    S      +     +G E +     +C   +LI  +E+   +  +       
Sbjct: 202 AAHFLEKQVSLTSERKVFETSFYGVEKKSLPFLLCATNLLINGIENPNLKHGNAFDFSKF 261

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               DL    +F   L NPP+G             ++ G   +  P   K S+ + LF+ 
Sbjct: 262 EDFDDLTKYPQFDIILMNPPYGG------------NERGNDIKNFPQEYKSSETADLFMA 309

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
            + ++L       GR+A+VL    LF   A + +  ++R LL +  +  I+ LP  +F  
Sbjct: 310 LILHRLSY----KGRSAVVLPDGFLF--GADNAKINLKRKLLSDFNLYLILRLPKSVFAP 363

Query: 400 RTNIATYLWILSNRK 414
            T+I T L   +  K
Sbjct: 364 YTSIPTNLLFFNADK 378


>gi|227500725|ref|ZP_03930774.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217183|gb|EEI82532.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 265

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 112/235 (47%), Gaps = 6/235 (2%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +   N +   A  L G ++   +  VI+P  ++RR ECALE T+  V E Y         
Sbjct: 26  SKEVNLVLSIANSLRGAYEAERYKDVIIPMVIIRRFECALEETKDKVVELYKK--DPKKP 83

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              + + +GY FYNTSE++L  L   S N  +N E+Y+  FS N K I  + D  + I +
Sbjct: 84  AIFYERESGYPFYNTSEFNLKNLLNDSDNIASNFENYVNGFSGNVKGILSNLDIYNQIKK 143

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+K+  LY I K FS ++L P T+ +  M  ++E +IRR+   V   A D  TPR+V+ L
Sbjct: 144 LDKSNRLYIIIKKFSEVDLDPRTIDNHKMGYLFEDIIRRYSENV--EAGDHYTPREVIRL 201

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
              +LL           G + T+ D  CG    +    N   +  S   +P    
Sbjct: 202 LVDVLLAEGCDDLLTGDGKVCTVLDAACGFRVIIVIEANSYVNIRSSRLLPKFKT 256


>gi|223933198|ref|ZP_03625189.1| N-6 DNA methylase [Streptococcus suis 89/1591]
 gi|223898128|gb|EEF64498.1| N-6 DNA methylase [Streptococcus suis 89/1591]
          Length = 419

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 134/368 (36%), Gaps = 63/368 (17%)

Query: 164 RRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           R F  E     +  +   TP  V  L   +                ++L D   GTG   
Sbjct: 50  RDFFQEEGADRKKLKQDYTPDGVAELLARV------------SRGGKSLADICAGTGSLT 97

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
              +N+          P +     +E   +     +  + IR+++++     S   +  +
Sbjct: 98  IQYLNYH---------PDVEFVRCEEFSAKVIPFLLINLAIRKIDAEVIHGDSLTRECFN 148

Query: 281 TL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
                       D  + ++    +SNPP+   W    D            RF   GL   
Sbjct: 149 VYSIQDGVISQIDSPSDRKVEVVISNPPYSMAWTPISDE-----------RFDLFGLAPK 197

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H  ++L      GG  +++L    LF   +   E  IR+ LLE+  I+ I+
Sbjct: 198 TKADFAFLLHGFHQL----EDGGSMSLILPHGVLFRANS---EGAIRQQLLEHGAIDTII 250

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            L  +LF  T I   + +L   ++++    V  ++A D +T     GK +  ++ +  ++
Sbjct: 251 GLAPNLFLNTGIPVAILLLRKGRSQK---DVFFVDAKDEFTK----GKAQNSLDVEHIKK 303

Query: 452 ILDIYVSR-ENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADI--TWRK 506
           I  +   R    +FS + D+         + + R +      +   L  +  ++    R+
Sbjct: 304 ITSVVSLRMTTERFSYIADWEKLVENGFNLNIPRYVDTFIPEEVQPLGVILRELIEIDRE 363

Query: 507 LSPLHQSF 514
           ++   + F
Sbjct: 364 IAETEREF 371


>gi|206603920|gb|EDZ40400.1| Putative Type I Restriction modification system, M subunit
           [Leptospirillum sp. Group II '5-way CG']
          Length = 549

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 163/475 (34%), Gaps = 90/475 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNT 96
              L+ L+        + RE  L  GG++ + +         + ++   +          
Sbjct: 34  LIFLKLLDE-----EESQRESRLRLGGNSGNTKLLFSGEAEKYRWSKWRFKSGEDLRNFV 88

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           R+ +  Y+AS + +   + +   F   +  +    +L ++     G +     +   V  
Sbjct: 89  RDAVFPYMASLAKDEPEVAD--YFRDAVLEIVDPNVLKQVIDELDGFDFR--KMGPDVKG 144

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +I+E+L+   G         F TPR +      ++           P +  TL+DP CGT
Sbjct: 145 DIFEYLLTHLGQSALN--GQFRTPRQIRAFMVEMV----------DPDIGDTLFDPACGT 192

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL------------------------------------ 240
            GFL DA++++    S H     +                                    
Sbjct: 193 AGFLIDALDYLLAKYSDHVEEYPIYGEEWLEKRGQTLVEAKKAISNLQTYKKGAGERIPD 252

Query: 241 ------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G ++  +   + V  +++  +     +  +   + G    +DL   +++  
Sbjct: 253 WKILEASIYGTDVSRQMLRISVMNLVLHGIRHARLKRANALSEMGGLSEEDLK--RQYKV 310

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPPF  +  KD                           +LFL  +   L      GG
Sbjct: 311 ILSNPPFAGQLPKD-------------SIRADLPTNSKKSELLFLSMMMQHL----APGG 353

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN- 412
           R A+V+    LF   +    +++R+ LL    + A+++LP  +F   + + T + +    
Sbjct: 354 RCAVVIPEGLLF--GSTKAHTDLRKKLLMEFDLMAVISLPAGVFKPYSGVKTGVLVFRKP 411

Query: 413 -RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD--QRRQILDIYVSRENGKF 464
              + +R  KV     T+            RI   +      +L+ + S ++ +F
Sbjct: 412 VSGSSKRIEKVWFYEITNDGYDPEKISGGGRIETPEKNDIPDLLNQWKSYKDSRF 466


>gi|78189485|ref|YP_379823.1| type I restriction modification enzyme methylase subunit
           [Chlorobium chlorochromatii CaD3]
 gi|78171684|gb|ABB28780.1| type I restriction modification enzyme methylase subunit
           [Chlorobium chlorochromatii CaD3]
          Length = 579

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/500 (15%), Positives = 170/500 (34%), Gaps = 113/500 (22%)

Query: 35  ILPFTLLRRLECALEPTRSAVR-----------------EKYLAFGGSNIDLESFVKVAG 77
           I     ++RL+      ++                    E        +   E   K A 
Sbjct: 34  ITYLLFMKRLDELDLKKQADAEWTGEPYISRFAGEWIPPEYRAKLSEQDTVEEQQKKQAE 93

Query: 78  YSFYNTSEYSL-----STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKA 130
            + +  ++ +L       + +     +++S +  F  +      +F     + +  + K 
Sbjct: 94  ATKFAIAKQTLRWSEFKHMQAEEMLLHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPKP 153

Query: 131 GLLYKICKNFSGIE--LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            L+ +  K    I   +  D+         +  ++YE L+             F TPR +
Sbjct: 154 SLMVEAVKTVDEIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIAQAG--KNGQFRTPRHI 211

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------------- 227
           + L T L+           P + + + DP CGT GFL  A  ++                
Sbjct: 212 IKLMTELV----------QPQLAQRIGDPACGTAGFLLGAYQYIVTQLAIKTSDHFRGVT 261

Query: 228 --ADCGSHHKIPPI---------------------LVPHGQELEPETHAVCVAGMLIRRL 264
              D G+H   P                          +G +++     + +  +++  +
Sbjct: 262 NMTDRGAHTFQPDEDGFVRTSVASGLTETAQAILQSSLYGYDIDSTMVRLGLMNLMMHGI 321

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           +         NI    TLSK       +H  ++NPPF      DK  + +          
Sbjct: 322 D-------EPNIDYKDTLSKSYNEEAEYHIVMANPPFTGSI--DKGDINEN--------- 363

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  +   +LF+ ++   L+     GG A +++    LF   +G+    +R+ L+E 
Sbjct: 364 --LTLSTTKTELLFVENIYRLLKR----GGTACVIVPQGVLF--GSGTAFKNLRQLLVER 415

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSN---RKTEERRGKVQLINATDLWTSIRNEGKK 440
             ++A++ +P+ +F     ++T + + +     K + R+     +   D+ +   +   K
Sbjct: 416 CELKAVITMPSGVFKPYAGVSTAILLFTKVYESKEKVRQPATHQVWFYDMQSDGYSLDDK 475

Query: 441 RRIINDD-QRRQILDIYVSR 459
           R  +      ++I+  + +R
Sbjct: 476 RTKLEGYGDLQEIVAKFHAR 495


>gi|301299984|ref|ZP_07206209.1| putative type I restriction-modification system, M subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852375|gb|EFK80034.1| putative type I restriction-modification system, M subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 463

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/498 (16%), Positives = 165/498 (33%), Gaps = 71/498 (14%)

Query: 34  VILPFTLLRRLECAL------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
            +L     + +   +      + +   V++KY     +  D +  +      +++   Y 
Sbjct: 22  YVL-MAFYQSISQKVLRKFDKDSSILEVQKKYEESRETVQDAQFVIAPQDTYYHHYQMYK 80

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            +         +L + I   +   K IF+D   S++    E A         F  ++   
Sbjct: 81  ANKFEYVELVKSLYN-IEEKNPKLKNIFQDVRGSTSSLPSETA---------FEKVDSRN 130

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +          +E  +               T +++  L T L+    + +         
Sbjct: 131 EVS--------FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV--------- 173

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YDP  GT   L          G +         +GQ++  +     +   ++  +  D
Sbjct: 174 SIYDPALGTASLLL---------GINQAALKENRYYGQDISTQAVKTAIMNAIVNDIAED 224

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +  +TL+ +   G +    +S+PP   KW  D++       + +      G
Sbjct: 225 KFE-----FKNENTLANNWEFG-KVDIVVSDPPINMKWNVDRNL------SQDRRYRDYG 272

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +     F++   +KL    +  G   + +    LF    G+ E  IRR LLE+  I
Sbjct: 273 EMP-NKADWGFILDGIDKL----SDNGMMVVSVVQGTLFR---GAKEYNIRRKLLEDGKI 324

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            A++ LP +    T IAT L +L     +     V  INA+  +           I+ + 
Sbjct: 325 RAVIQLPGNTKLSTTIATCLLVLRKSSEDR---DVFFINASQEYEK----KGLENILTEA 377

Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+DI+  ++  K FS +  Y         +     ++    K  L   E      K
Sbjct: 378 NVDKIVDIFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEK 437

Query: 507 LSPLHQSFWLDILKPMMQ 524
           L          +   M  
Sbjct: 438 LDEKLSQTDATLESLMKD 455


>gi|329939285|ref|ZP_08288621.1| type I restriction modification system protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301514|gb|EGG45408.1| type I restriction modification system protein [Streptomyces
           griseoaurantiacus M045]
          Length = 793

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 112/301 (37%), Gaps = 39/301 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  L+ +FGS  +  + +F TPR VV L     L  +D+         R +YDP    G 
Sbjct: 232 FRQLVDQFGSRAALPSGEFFTPRAVVRLMRDAALGDEDSA--------RRVYDPYARAGE 283

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +            L   G+  +  T  +    + +  +  +     +     
Sbjct: 284 MLDGVAERL-------GGVVPLTLRGESPQRGTLRLAGMNLALHGIPVELEAGTA----- 331

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                +    G R    L+NPPF         AV K  +  +   +  G P     +  +
Sbjct: 332 APWNERAWPKGHRADLILTNPPFNAH-----GAVPKPREGID---WPYGPPPSGSPAFAW 383

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H+   L+      GRA +V+  S   +      E EIR  L+E+  +E IVALP  LF
Sbjct: 384 LQHVLVSLK----DEGRAGVVMPVSAGTSTDVR--EREIRSRLVEDGAVECIVALPPQLF 437

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               ++  LW L  R +   R ++  ++A DL           R+++D+    +     +
Sbjct: 438 SGAQVSVCLWFL--RSSAAVREEILFVDARDLGDKATRGP---RVLSDEHVGAVTRTVQA 492

Query: 459 R 459
            
Sbjct: 493 W 493


>gi|147679037|ref|YP_001213252.1| hypothetical protein PTH_2702 [Pelotomaculum thermopropionicum SI]
 gi|146275134|dbj|BAF60883.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 251

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 25/211 (11%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              +A  +   + IFE  DF++  A         LY + +  S   L    V   ++   
Sbjct: 1   MRAVARENPKLQGIFEQVDFNARAAGQPIIDNDRLYNLIQILSRHRLGLKDVEADILGRA 60

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+R+F     + A +F TP +V  L   +L           P     +YDP CG+GG
Sbjct: 61  YEYLLRKFAEGQGQSAGEFYTPSEVAWLMALIL----------RPRPGDEIYDPACGSGG 110

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  ++    D          +  +GQE+   T A+      I  LE++         + 
Sbjct: 111 LLIKSVLACRDAYGTDSQTAPVKIYGQEINYTTFAMAKMNAFIHDLEAEI--------RL 162

Query: 279 GSTLSKDLFTG-----KRFHYCLSNPPFGKK 304
           G T+++  FT      + F    +NP + + 
Sbjct: 163 GDTMARPAFTNPDGSLRVFDKVTANPMWNRD 193


>gi|5712712|gb|AAD47620.1| truncated HsdM [Lactococcus lactis]
          Length = 206

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 35/225 (15%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKD 308
             +++  +E +  +     I    TL  D   G        + F   ++NPP+   W   
Sbjct: 1   MNLMMHNIEYNDIQ-----IHHADTLESDWPDGVIEGKDTPRMFDAVMANPPYSAHWNN- 54

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                K+ ++    R   G+   +     FL+H     +      GR AI+L    LF G
Sbjct: 55  -----KDREDDPRFR-EYGIAPKTKADYSFLLHCLYHTK----ESGRVAIILPHGVLFRG 104

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            A   E  IR+ L++   IEA++  P  LF  T I   + IL   +       +  ++A+
Sbjct: 105 AA---EGRIRKALIDKHQIEAVIGFPDKLFLNTGIPVCVLILKKNRANS---DILFVDAS 158

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
             +  ++N     + +  +   +I +  + R+   K+S +     
Sbjct: 159 QGFEKMKNL----KQLRPEDIDKITETVIHRKAVDKYSHLATLEE 199


>gi|227506257|ref|ZP_03936306.1| type I site-specific deoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227197158|gb|EEI77206.1| type I site-specific deoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 532

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 141/410 (34%), Gaps = 59/410 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNT 96
              ++ L+      R    +K  A G      + F        + N  E           
Sbjct: 44  LLFIKDLDE-----RQVQIDKRRALGDPTATEDIFDASQQDLRWRNLIEDRDIARRKATI 98

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
              +  +I                ++    +E    L ++ +    +          +  
Sbjct: 99  ITKVFPFIKEMGGTGFQE----HMANASFEIESEATLSRVMELIDQLHFSNK----DMKG 150

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  +     F TP  ++ L  AL+           P   + + DP CGT
Sbjct: 151 DLYEYMLDKLSTSGTN--GQFRTPSHIIELIVALM----------EPTPQQRIIDPACGT 198

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A + +A                      G + +     +    M +   E    
Sbjct: 199 AGFLVAANDWIALHHREDLFNKETRTTFTDEGLTGFDFDKTMVRIAAMNMFMHGFED--- 255

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                NI    +L K   T + F   L+NPPF      DKDA++ + K+         + 
Sbjct: 256 ----PNISHHDSLQKLPTTFEDFDLVLANPPFAGSL--DKDAIDPKLKS---------VT 300

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 +LF+      L+     GGRAA+++    LF   +      +R+ L+E+  ++A
Sbjct: 301 TAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVEDQRLDA 354

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++ LP+ +F   + ++T +   +   +     +V   + T    S+ ++ 
Sbjct: 355 VIKLPSGVFKPYSGVSTAVLCFTRTDSGG-TDEVWFYDVTADGYSLDDKR 403


>gi|299065124|emb|CBJ36288.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 115/333 (34%), Gaps = 55/333 (16%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            +      A    ED  F+     +    LL ++ +    I LH       V   +YE L
Sbjct: 101 ALGDNDPAAGRHLEDIRFT-----ITTPALLARVVQLLDAIPLH----RRDVRGAVYESL 151

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + R       GA  F TPR +V     L            P    TL DP  GT G L  
Sbjct: 152 LGRIALTGRSGA--FHTPRHIVRFMVELT----------RPDPSDTLCDPAAGTCGILAA 199

Query: 223 AMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSK 274
           A  ++                    + HG E++     +    +L+  +E  D R   + 
Sbjct: 200 AGEYLRREHPGLLHDARQSAHFHHGMFHGHEIDRAMLRIGSMNLLLHGVEGADLRHGDAL 259

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                            +   L++PPF          V++   + +L R    L +    
Sbjct: 260 AGAHAD-------EAGAYSLILTHPPFTGD-------VDRGSADPDLLR----LVRTRKT 301

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL      L      GGRAA+++    LF   +G     +RR L+E+  +E ++ LP
Sbjct: 302 ELLFLARCLRLLRP----GGRAAVIVPDGVLF--GSGIAHRTLRRMLVEDHQLEGVIKLP 355

Query: 395 TDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
             +F     I T + + +   T    G V   +
Sbjct: 356 CGVFRPYAGIGTAILLFTRTDTGG-TGHVWFYD 387


>gi|251791791|ref|YP_003006512.1| N-6 DNA methylase [Dickeya zeae Ech1591]
 gi|247540412|gb|ACT09033.1| N-6 DNA methylase [Dickeya zeae Ech1591]
          Length = 570

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 165/490 (33%), Gaps = 104/490 (21%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAF-----------------GGSNIDLESFVKVAG 77
           I     ++RL+   +  ++        +                    + D E   K+  
Sbjct: 34  ITYLLFMKRLDELDQKRQADAEFTGEKYTSKFEGSWIPPEYRARREAKDTDAEWAKKLED 93

Query: 78  YSFYNTSEYSL-----STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKA 130
              Y   + +L       + +     +++  +  F  +      +F     + +  + K 
Sbjct: 94  EKRYQIEKRTLRWSEFKRMQAEEMLQHVQGKVFPFLKDLNGAESNFTHHMKNAVFIIPKP 153

Query: 131 GLLYKICKNFSGIE--LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            LL +  K    I   +  D+         +  ++YE L+    +        F TPR +
Sbjct: 154 ALLVEAVKTIDDIFEIMERDSREKGQAFQDIQGDVYEFLLSEIATAG--KNGQFRTPRHI 211

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--- 240
           + L   L+           P + + + DP CGTGGFL  A  ++    +       L   
Sbjct: 212 IKLIADLV----------RPQLGQRIVDPACGTGGFLLGAYQYIVTQLAIKDGKQDLSPD 261

Query: 241 -----------------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                                    +G +++     + +  +++  ++         +I 
Sbjct: 262 EDGFARTSVAAGLTRKTQLILQESLYGYDIDATMVRLGLMNLMMHGID-------EPHID 314

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              TLSK       +   L+NPPF      DK  + +  +              +   +L
Sbjct: 315 YQDTLSKGYNEEASYDIVLANPPFTGSI--DKGDINENLQ-----------LATTKTELL 361

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ ++   L+     GG A +++    LF   +     ++R+ L+E   ++A++ +P+ +
Sbjct: 362 FVENIYRLLK----KGGTAGVIVPQGVLF--SSAKAFRDLRQTLVERCDLKAVITVPSGV 415

Query: 398 F-FRTNIATYLWILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           F     ++T + + +       + T    G V          S+ ++  K+    D   +
Sbjct: 416 FKPYAGVSTAILLFTKVWGPKDKVTAPATGHVWFYEMAADGYSLDDKRTKQEGYGD--LQ 473

Query: 451 QILDIYVSRE 460
            I+  Y +R+
Sbjct: 474 DIITSYHARD 483


>gi|146321310|ref|YP_001201021.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 98HAH33]
 gi|145692116|gb|ABP92621.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 98HAH33]
          Length = 359

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 132/365 (36%), Gaps = 49/365 (13%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +      ++ +         ++IYE +++   S  +    +F TPR        +L    
Sbjct: 1   MINVIDEVDFN-SPEDRHSFNDIYEKILKDIQSAGNS--GEFYTPRAATDFIAEML---- 53

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHA 253
                 +P +  T+ D  CGTGGFLT  +NH+       +          G E +   H 
Sbjct: 54  ------NPQLGETMADLACGTGGFLTSTLNHLGQQRKTSEDVQKYNQAVFGIEKKAFPHL 107

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + V  + +  ++       +   +      +D    ++F   + NPPFG           
Sbjct: 108 LAVTNLFLHEIDDPKIIHGNTLEKN----VRDYTEDEKFDIIMMNPPFGGS--------- 154

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              +   +    P   + S+ + LF+  +  +L+      GR  ++L    LF       
Sbjct: 155 ---ELETIKNNFPAELRSSETADLFMAVIMYRLK----ENGRVGVILPDGFLF---GEGV 204

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           ++ +++ L+E   +  I+ LP  +F   T I T +      K  E     +L +  + + 
Sbjct: 205 KTRLKQKLVEEFNLHTIIRLPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPEGYK 263

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +       R     D    + + + +R+      +L+   +  +  +      +++  D+
Sbjct: 264 NFSKTKPMRN----DHFNPVREWWKNRQE-----ILEGNFYKSKSFRPDELASLNYNFDQ 314

Query: 493 TGLAR 497
            G  +
Sbjct: 315 CGFPK 319


>gi|90579610|ref|ZP_01235419.1| putative type I restriction enzyme M protein [Vibrio angustum S14]
 gi|90439184|gb|EAS64366.1| putative type I restriction enzyme M protein [Vibrio angustum S14]
          Length = 525

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 139/384 (36%), Gaps = 79/384 (20%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F DF        ++K  LL K  +  S + L    V      ++YE+L+ +  +      
Sbjct: 106 FADF-MKDAQLMIQKPSLLVKAVELVSELPLENKDVK----GDLYEYLLSKLTTAGIN-- 158

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------- 227
             F TPR ++     +L                 + DP CGTGGFL+    ++       
Sbjct: 159 GQFRTPRHIIRAMIEML----------DVEETHRICDPACGTGGFLSSTYEYLLEKYSSP 208

Query: 228 ----ADCGSHHKIPPIL--------------------------VPHGQELEPETHAVCVA 257
                +     +  P+L                          + HG + +     V   
Sbjct: 209 EGTEKEQAFDKEGKPVLDVHGNPVFNYLYAGDLLEKRTHIDYDMFHGFDFDSTMLRVAAM 268

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +++  ++  P       + Q             F   L+NPPF       K ++++E  
Sbjct: 269 NLVMHGVK-QPDIHYQDTLSQSFIERFPDEAKNGFDIILANPPF-------KGSLDEEDV 320

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           +  + +    + K     +LF+  +   L++    GGR A ++    LF   +      +
Sbjct: 321 DPAILK----VVKTKKTELLFVALIQRMLKV----GGRTATIVPDGVLF--GSSKAHHTL 370

Query: 378 RRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R+ L+E++ +EA+++LP+ +F     ++T + I +        G    +   D+    ++
Sbjct: 371 RKHLVEDNQLEAVISLPSGVFKPYAGVSTAILIFTKG------GSTNNVWFYDVQADGKS 424

Query: 437 EGKKRRIINDDQRRQILDIYVSRE 460
              KR  I D+    ++  Y + +
Sbjct: 425 LDDKRTPIKDNDLPDLVKQYKAYQ 448


>gi|160885909|ref|ZP_02066912.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483]
 gi|156108722|gb|EDO10467.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483]
          Length = 221

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 107/235 (45%), Gaps = 20/235 (8%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               ++NPPF  KW  D   ++ E +  E+G+  P     S     F++ + +KL++   
Sbjct: 1   METVIANPPFSAKWSADVSFMDDE-RFSEVGKLAP----KSKADYAFVLDIVHKLDV--- 52

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410
             G AAIVL    LF G A   E  IRR+L+E+ + I+A++ LP ++F+ T+I T + ++
Sbjct: 53  -TGIAAIVLPHGVLFRGAA---EGVIRRFLIEDKNCIDAVIGLPANIFYGTSIPTCILVI 108

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
              + E+    +  I+A+  +  ++N+      ++D+Q  +I+  +  R E  K+S    
Sbjct: 109 KKCRKEDE--NILFIDASKDFEKLKNK----NSLSDEQIDKIVQTFQERKEIKKYSHCAT 162

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +        +  P  +    ++  +         ++L         +I   + +
Sbjct: 163 LQEVMANDFNLNIPRYIDVFEEEEPIDIKAVMDEIKELEAKRAELDKEIDVYLRE 217


>gi|46143841|ref|ZP_00133971.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 234

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 32/239 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E  KY A+ 
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
             + ++    E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 -SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHL 162
             ++ K +F DFD +S        +K   L  + K  + ++    +     +  + YE L
Sbjct: 124 SENDIKGLFADFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           I  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L 
Sbjct: 184 ISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLLL 234


>gi|313678680|ref|YP_004056420.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
 gi|312950278|gb|ADR24873.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
          Length = 483

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 165/455 (36%), Gaps = 58/455 (12%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDF----DFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               N L   +     N    F        F      ++   LL ++      +    + 
Sbjct: 80  NFVNNELLKTLKEIKINPDMPFRKQIVKSAFEDISNYMKDGTLLRQVINVIDELNFD-NI 138

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               + ++IYE ++++       G+ +F TPR +      +L           P + +T+
Sbjct: 139 KEIHLFNDIYETILKKIQEG---GSGEFYTPRALTDFIAEIL----------DPKLGQTM 185

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESD 267
            D  CGTGGFLT  +N V +  +  +         +G E +   + + V  + +  ++  
Sbjct: 186 ADLACGTGGFLTSFLNRVNEQKNTLEDIKKYSQSVYGIEKKGFPYLLAVINLFLHNVDDP 245

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +   +      KD    ++F   + NPPFG   +K             +    P 
Sbjct: 246 NLLHGNSLEKN----VKDYSEDEKFDLIMMNPPFGGSEQK------------IIQSNFPK 289

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + ++ + LF++ + ++L+     GG+AA++L    LF   A   +  I++ L     +
Sbjct: 290 DLRSAETADLFMLVIMHRLK----MGGKAAVILPDGFLFGTGA---QKNIKKKLFSEFNV 342

Query: 388 EAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
             I+ LP  +F   T+I T +    N  + +     +L    D+  + +N  K + +++ 
Sbjct: 343 HTIIRLPKTVFSPYTDINTNIIFFDNNGSTKSTWFYRL----DMPENQKNFSKTKPMVSK 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                I   + +R       +++   +  ++  +     + + L++ G      ++    
Sbjct: 399 -HLDPIRQWWNNRNE-----IIEDTFYKSKQFSISEIEELDYNLNQCGYLEQSEEV---- 448

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           L P+         +  +        +E       K
Sbjct: 449 LEPMELIKQYYDRRTELNNKIDNVISEIIKILEKK 483


>gi|330992550|ref|ZP_08316498.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1]
 gi|329760749|gb|EGG77245.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1]
          Length = 149

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 12/112 (10%)

Query: 566 RKDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
           ++      V        G+ +PD++L + ENVP  E I  YF REV PH PDA+ID+   
Sbjct: 46  QRGEDGKIVLGQRGKAKGKPVPDSSLRDTENVPLDEDIHTYFKREVLPHAPDAWIDE--- 102

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                +  ++GYEI FNR+FY ++P R L++IDA+LK V A+I  +L E++ 
Sbjct: 103 -----DKTKIGYEIPFNRYFYVFEPPRPLEEIDADLKEVTAKIMAMLGELSA 149


>gi|323698910|ref|ZP_08110822.1| N-6 DNA methylase [Desulfovibrio sp. ND132]
 gi|323458842|gb|EGB14707.1| N-6 DNA methylase [Desulfovibrio desulfuricans ND132]
          Length = 554

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/487 (14%), Positives = 161/487 (33%), Gaps = 92/487 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSL-- 88
           I     ++RL+  L+  + A  E     Y +          F        Y    ++L  
Sbjct: 34  ITYLLFMKRLDD-LDQKKQADAEWTGEPYTSKFEGLWIPPEFRGKEDEDKYAVDRHTLRW 92

Query: 89  ---STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143
                + +     ++++ +  F  +      +F     + +  + K  LL +  K    I
Sbjct: 93  REFKHMQAEEMLQHVQTRVFLFLKDMNGATSNFTRHMENAVFIIPKPALLVEAVKTIDEI 152

Query: 144 E--LHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              +  D+         +  ++YE L+    +        F TPR ++ L   L+     
Sbjct: 153 FEIMEKDSQEKGQAFQDIQGDVYEMLLSEIATAG--KNGQFRTPRHIIKLMADLV----- 205

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNH-VADCGSHHKIPPIL--------------- 240
                 P +   + DP CG+GGFL  A  + V +         +                
Sbjct: 206 -----RPQLGHRIADPACGSGGFLLGAYQYIVTELAKKAGAKDLQPDEDGFVRTSVAAGL 260

Query: 241 ----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G +++     + +  +++  ++         NI    TLSK      
Sbjct: 261 TEKAQAILQASLFGYDIDVTMVRLGLMNLMMHGID-------EPNIDYKDTLSKSYLEEG 313

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   ++NPPF      DK  + +                 +   +LF+ +    L+   
Sbjct: 314 EYDIVMANPPFTGSI--DKGDINENL-----------TVATTKTELLFVDNFYRLLK--- 357

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GG A +++    LF   +G     +R  L++   ++A++ +P+ +F     ++T + +
Sbjct: 358 -KGGTACVIVPQGVLF--GSGKAFKALREILVDRCDLKAVITMPSGVFKPYAGVSTAILL 414

Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--DQRRQILDIYVSREN 461
            +       + T+     V          S+ ++  K+    D  D   +  +    ++ 
Sbjct: 415 FTKVWGPKEKVTQAATEHVWFYEMQADGYSLDDKRSKQEGYGDLLDIVARFHERNTEKDI 474

Query: 462 GKFSRML 468
            + ++  
Sbjct: 475 DRTAKWF 481


>gi|257794242|ref|ZP_05643221.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
 gi|257788214|gb|EEV26554.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
          Length = 237

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 94/244 (38%), Gaps = 34/244 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 182 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 233

Query: 216 TGGF 219
           +G  
Sbjct: 234 SGSL 237


>gi|325957310|ref|YP_004292722.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus acidophilus 30SC]
 gi|325333875|gb|ADZ07783.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus acidophilus 30SC]
          Length = 492

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 156/451 (34%), Gaps = 53/451 (11%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  +   E      ++ Y +     +    + +        TS+  L  + +     
Sbjct: 36  LFLKVYDDR-EQIWEIDQDDYESIIPKGMHWREWAEDNKDGKALTSDELLDFVNNKLLPT 94

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                + + +  +KAI +D  F      ++   LL ++    + ++   D     +  +I
Sbjct: 95  LKNITVTNETPISKAIVKDA-FIDANNYMKNGVLLRQVVNVVNEVDFT-DPKDRHLFGDI 152

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++   S     + +F TPR +       L           P + + + D  CGTGG
Sbjct: 153 YESILKELQSAG--SSGEFYTPRALTDFIAETL----------KPKLGQRIADLACGTGG 200

Query: 219 FLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           FL  A+N ++        +        G E + + + + V  +L+  +++      +   
Sbjct: 201 FLVSALNILSKQVHSVEDRELYNKAVFGIEKKGQPYILAVTNLLLHDVDNPDIVHGNSLE 260

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +       +     +F   + NPPFG              +   + +  P   + S+ + 
Sbjct: 261 K----RVTEYTDKDKFDLIMMNPPFGGS------------ELPIIKQNFPTDLQSSETAD 304

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL  +  +++      G+  ++L    LF       +  I++ +L++  +  I+ LP  
Sbjct: 305 LFLALIMYRIK----DNGKVGVILPDGFLFGND--GAKLNIKKRMLKDFNLHTIIRLPGS 358

Query: 397 LFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILD 454
           +F   T+IAT +            G  +      L          K R +  +    + +
Sbjct: 359 IFSPYTSIATNILFFDK------TGPTKETWFYRLDMPKGYKHFSKTRPMKLEHFDPVRE 412

Query: 455 IYVSR-----ENGKF-SRMLDYRTFGYRRIK 479
            +  R     E+G + S+             
Sbjct: 413 WWNDRHEIQDEDGNYKSKAYTPEELAKNNYN 443


>gi|257793832|ref|ZP_05642811.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
 gi|257787804|gb|EEV26144.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
          Length = 298

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 94/244 (38%), Gaps = 34/244 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 182

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 183 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 242

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI RF +   + A +F TP+ V  +   ++ D  D L        R +YDPTCG
Sbjct: 243 GDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKL--------RHVYDPTCG 294

Query: 216 TGGF 219
           +G  
Sbjct: 295 SGSL 298


>gi|223938811|ref|ZP_03630699.1| N-6 DNA methylase [bacterium Ellin514]
 gi|223892509|gb|EEF58982.1| N-6 DNA methylase [bacterium Ellin514]
          Length = 811

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 131/359 (36%), Gaps = 55/359 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F              +  K F  I           + + +E+L+   GS+    A  F T
Sbjct: 100 FREIFKNAYLPYRDPETLKAFLKIIDEFTYDHSERLGDAFEYLLSVLGSQG--DAGQFRT 157

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR ++    +++           P    T+ DP CGT GFL  +  H+    +  +    
Sbjct: 158 PRHIIDFIVSVV----------DPKKNETVLDPACGTAGFLISSYKHILRANTDARGNSK 207

Query: 240 LV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
           L             G ++ P+   + +  + +             +I +  TL+ +    
Sbjct: 208 LTPDDRGRLAKNFKGYDISPDMVRLSLVNLYLHGF-------TDPHIYEYDTLTSEERWN 260

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +     L+NPPF       K  ++   +              +   +LF+ ++   L   
Sbjct: 261 EFADVILANPPF----MSPKGGIKPHKRFS---------VPSNRSEVLFVDYMLEHL--- 304

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
               GRA I++    +F  ++G+    +R  LL+  LI  I++LP+ +F   + + T + 
Sbjct: 305 -TAHGRAGIIVPEGIIF--QSGTAYRRLREVLLKESLI-GIISLPSGVFQPYSGVKTSIL 360

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSR 466
           IL  R  + R   V     +D+     + G KR +   +    ++  Y +   G + SR
Sbjct: 361 ILDKRVAKSRP-HVLF---SDIRAIGVSLGVKRTVTERNDLPFVVQDYAAYHEGTELSR 415


>gi|146318349|ref|YP_001198061.1| HsdM [Streptococcus suis 05ZYH33]
 gi|146320544|ref|YP_001200255.1| HsdM [Streptococcus suis 98HAH33]
 gi|145689155|gb|ABP89661.1| putative HsdM [Streptococcus suis 05ZYH33]
 gi|145691350|gb|ABP91855.1| putative HsdM [Streptococcus suis 98HAH33]
          Length = 299

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 113/240 (47%), Gaps = 21/240 (8%)

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI QG+T+  +    ++  Y +SNPPF   + + +D VE    + E  RF  G+PKI +
Sbjct: 43  HNIVQGNTILNNRHV-EKMDYIVSNPPFKLDFSEWRDQVESLPNSSE--RFFAGVPKIPN 99

Query: 334 GS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                     LF+ H+ + L+      G+AAIVL +  +        + +IR+ L++  +
Sbjct: 100 KKKESMAIYQLFIQHIIHSLK----EDGQAAIVLPTGFITAQS--GIDKKIRQHLVDEKM 153

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  +V++P+++F  T     +  +  +     +  V LI+A++L T ++    ++ +++ 
Sbjct: 154 LAGVVSMPSNIFATTGTNVSILFIDKK----NKDDVVLIDASNLGTKVKEGKNQKTVLSP 209

Query: 447 DQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           D+  QI+  ++++E    FS  + Y     +   +         +D   ++  E +   +
Sbjct: 210 DEESQIIQTFINKEVVEDFSVKVSYEEIKDKNYSLSAGQYFDIKIDYVDISPEEFEEKMQ 269


>gi|207859654|ref|YP_002246305.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|206711457|emb|CAR35842.1| putative Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 421

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 139/401 (34%), Gaps = 73/401 (18%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSN 157
           N  SYI       K IF +           ++  +       + I   + +T+    + +
Sbjct: 66  NDNSYIKLNQKEFKLIFSNITLYD----FSQSRDIKNYISRITEICNEYINTLSIHSILD 121

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++  LI        +      TP ++V     ++                + +DP CG+G
Sbjct: 122 LFTSLIEENRPPTQK----HYTPHEIVTFMGNII----------QAQKGESFFDPACGSG 167

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F+++ +               +   G E + +   +    ML+  L        S +  
Sbjct: 168 EFISEIIK------------NQVAISGSEYDVDRLKISKMKMLVNDL--------SPSNI 207

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             S  ++     K F   LSNPPF  K   D           E+     G P  S+    
Sbjct: 208 SPSYFTEGHNLKKNFDIILSNPPFSLKIPFDM----------EMHFCMYGKPPTSNADFA 257

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +    L+      GRAAI+L    LF       E EIR+ +++N+ I AI+ LP  +
Sbjct: 258 FLQYCIFMLK----DNGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 310

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T IAT + +   +   ++   + +IN       +R +      +  +   +      
Sbjct: 311 FKTTAIATNIIVFKKK---QKTNDILMIN-------VRKKNNLNVNLLLELITK------ 354

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            R   + SR+            +   L     + KT L +L
Sbjct: 355 -RSTTEISRLTSLNEISAHDYNLSASLYFRPQVKKTDLKQL 394


>gi|119356723|ref|YP_911367.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354072|gb|ABL64943.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 834

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 138/384 (35%), Gaps = 63/384 (16%)

Query: 59  YLAFGGSNIDLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--A 111
           Y      + + E            ++ Y  ++   S LG   T N     I+S  +N   
Sbjct: 37  YKFMDDMDAESEELGGVRTFFTKEFARYGWAKLMRSGLGGHETLNLYAEAISSMPENPGI 96

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            A+F    F +          L    K     E          + + +E+L+   GS+  
Sbjct: 97  PALFRSI-FKNAYLPYRDPETLKSFLKIIDEFEYDHSE----RLGDAFEYLLSVLGSQG- 150

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TPR ++    A+L           P     + DP CGT GFL  A  H+    
Sbjct: 151 -DAGQFRTPRHIIDFMVAVL----------DPKKEEKILDPACGTAGFLISAYKHILRAN 199

Query: 232 SHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +      +L            +G ++ P+   + +  + +             +I +  T
Sbjct: 200 TDADGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLHGF-------ADPHIDEYDT 252

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L+      +     L+NPPF       K  ++   +            + +   +LF+ +
Sbjct: 253 LTSLDKWNEHADVILANPPF----MSPKGGIKPHKRFS---------IQATRSEVLFVDY 299

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400
           +A  L+      GRA I++    +F  ++G+    +R+ L++  L+ A+++LP  +F   
Sbjct: 300 MAEHLK----PNGRAGIIVPEGIIF--QSGTAYKSLRKMLVDTGLV-AVISLPAGVFQPY 352

Query: 401 TNIATYLWILSNRKTEERRGKVQL 424
           + + T + IL      +R   +  
Sbjct: 353 SGVKTSIIILDKS-IAKRSNTIAF 375


>gi|148263099|ref|YP_001229805.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146396599|gb|ABQ25232.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 549

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/523 (17%), Positives = 166/523 (31%), Gaps = 98/523 (18%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            L  L+   E   S      L  G S      F   A    ++   +      +   R  
Sbjct: 33  FLIYLKLLDEEETSRELRVRLGAGNSRF---LFPDQAERFRWSKWRFKSGIELNDFIRGE 89

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  Y+AS   +   + E   F      + +  +L ++      IE     +   V  +I+
Sbjct: 90  VFPYMASLVKDEPQVAE--YFRDARLEINEVDVLKQVVDELDSIEFR--KLGPDVKGDIF 145

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+   G         F TP+ +     A++           P    T+ DP CGT GF
Sbjct: 146 EYLLTHLGQSALN--GQFRTPKQIRSFMVAMV----------DPEFGDTIDDPACGTAGF 193

Query: 220 LTDAMNHVADCGSHH-----------------------KIPPILV--------------- 241
           L DA+ ++    S +                       K  P L                
Sbjct: 194 LIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQMPNLQTYRKGPGEKIPDWGI 253

Query: 242 ----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +G ++  +   + +  +++  +     +  +   + G     DL   +++   LS
Sbjct: 254 LEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEMGGLTEDDL--NRKYKVSLS 311

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF     KD                           +LFL  +   L      GGR A
Sbjct: 312 NPPFAGMLPKD-------------SIRHDLPTNSKKSELLFLGLMMESL----APGGRCA 354

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTE 416
           +V+    LF   +     E+R+ LL++  + A+V+LP  +F     + T + +       
Sbjct: 355 VVVPEGALF--GSTGAHVELRKKLLQDFEVLAVVSLPAGVFKPYAGVKTSVLVFRRPANP 412

Query: 417 ERRG-----KVQLINATDLWTSIRNEGKKRRIINDD--QRRQILDIYVSRENGKFSRMLD 469
             +G     KV      +            R    +      +L  +   + GKFS    
Sbjct: 413 PEQGKPATAKVWFYEIKNDGYDPDKITGGGRPETPEQNDIPTMLVAWEGYKAGKFS---- 468

Query: 470 YRTFGYRRIKVLRPLRMSFIL---DKTGLARLEADITWRKLSP 509
            +  G     VL+P          D   +A  +A++   +  P
Sbjct: 469 -QPPGVEAGTVLKPGSPDPKCWWADYERIADSDANLGASRYKP 510


>gi|227834296|ref|YP_002836003.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455312|gb|ACP34065.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 590

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 138/410 (33%), Gaps = 58/410 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNT 96
              ++ L+      R    +K  A G      + F        + N  E           
Sbjct: 101 LLFIKDLDE-----RQVQIDKRRALGDPTATEDIFDASQQDLRWRNLIEDRDIARRKATI 155

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            N +  +I                ++    +E    L ++ +    +          +  
Sbjct: 156 INKVFPFIKEMGGTGFQE----HMANASFEIESEATLSRVMELIDQLHFSNK----DMKG 207

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  +     F T   ++ L  AL+           P   + + DP CGT
Sbjct: 208 DLYEYMLDKLSTSGTN--GQFRTTSHIIELLVALM----------EPTPQQRIIDPACGT 255

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A + +A                      G + +     +    M +   E    
Sbjct: 256 AGFLVAANDWIAHHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFEEPNI 315

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                  Q  +T        + F   L+NPPF      DKDAV+ + K+         + 
Sbjct: 316 SYRDSLQQLPTTF------DEAFDLVLANPPFAGSL--DKDAVDPKLKS---------VT 358

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 +LF+      L+     GGRAA+++    LF   +      +R+ L+E+  ++A
Sbjct: 359 TAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVEDQRLDA 412

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++ LP+ +F   + ++T +   +   +     +V   + T    S+ ++ 
Sbjct: 413 VIKLPSGVFKPYSGVSTAVLCFTRTDSGG-TDEVWFYDVTADGYSLDDKR 461


>gi|237750520|ref|ZP_04581000.1| type I restriction-modification system M subunit [Helicobacter
           bilis ATCC 43879]
 gi|229374050|gb|EEO24441.1| type I restriction-modification system M subunit [Helicobacter
           bilis ATCC 43879]
          Length = 496

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 138/377 (36%), Gaps = 35/377 (9%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ L    E   +A+ E       S I      +       + +   L T  +     
Sbjct: 31  LFLK-LYDYYEKEWTALNEMNGTEYHSIIPEHLRWESWAVGEKSPTGEPLLTFINNELFP 89

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L++   + S           F      ++   LL ++           +    + +  +
Sbjct: 90  TLKALNITESTPLNQSIVRKVFEDLNNYMKDGYLLREVINEIESSLKIHNRQDFKELCKV 149

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE  ++   S  +  A +F TPR V      +L          SP +  ++ D  CGTGG
Sbjct: 150 YESFLKTLQSAGN--AGEFYTPRAVTEFMVEML----------SPKLGESVADLACGTGG 197

Query: 219 FLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKN 275
           FL  A + +    +      +     +G E +     +C   +LI  +E+ + +   + +
Sbjct: 198 FLISAAHFLEKQVNLTSERKVFETSFYGVEKKSLPFLLCATNLLINGIENPNLKHGNAFD 257

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                    +L    +F   L NPP+G             ++ G+  +  P   K S+  
Sbjct: 258 FSNFEDFDINLTKYPKFDIILMNPPYGG------------NERGDDIKNFPQEYKSSETV 305

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  + ++L       G+AA+VL    LF   A + +  ++R LL +  +  I+ LP 
Sbjct: 306 DLFMALILHRLSY----KGKAAVVLPDGFLF--GADNAKINLKRKLLSDFNLYLILRLPK 359

Query: 396 DLFF-RTNIATYLWILS 411
            +F   T+I T L   +
Sbjct: 360 SVFAPYTSIPTNLLFFN 376


>gi|302380292|ref|ZP_07268763.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311897|gb|EFK93907.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 257

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 1   MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+  +      ANFIW  A  L G +    +G VI+P T++RR EC LE T+ AV EKY
Sbjct: 10  MTDDVSIDITQEANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKY 69

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                 +    +  +++G  FYNTS ++L  L     N ++N   YI SFS N   I   
Sbjct: 70  T--DNKSYPERAMYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQ 127

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +  + I ++ K   L+ + K FS ++L  +T     M  I+E+LI RF    +  A  +
Sbjct: 128 LEIKTHIKKMNKENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRF--YQNVDAGQY 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T RD++ +   ++         +   +I T+ D   G    +    N   +  S   +P
Sbjct: 186 YTGRDIIKMMVYVITAEGCDDIYDEGKVI-TIADQAAGFRVIIVIEANSYVNTRSSRLLP 244

Query: 238 PILV 241
               
Sbjct: 245 KFKT 248


>gi|7467226|pir||T28670 hypothetical protein - Salmonella choleraesuis
 gi|1679865|emb|CAA68056.1| unnamed protein product [Salmonella enterica]
          Length = 417

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 138/401 (34%), Gaps = 73/401 (18%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSN 157
           N  SYI       K IF +           ++  +       + I   + +T+    + +
Sbjct: 62  NDNSYIKLNQKEFKLIFSNITLYD----FSQSRDIKNYISRITEICNEYINTLSIHSILD 117

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++  LI        +      TP  +V     ++                + +DP CG+G
Sbjct: 118 LFTSLIEENRPPTQK----HYTPHGIVTFMGNII----------QAQKGESFFDPACGSG 163

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F+++ +               +   G E + +   +    ML+  L        S +  
Sbjct: 164 EFISEIIK------------NQVAISGSEYDVDRLKISKMKMLVNDL--------SPSNI 203

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             S  ++     K F   LSNPPF  K   D           E+     G P  S+    
Sbjct: 204 SPSYFTEGHNLKKNFDIILSNPPFSLKIPFDM----------EMHFCMYGKPPTSNADFA 253

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +    L+      GRAAI+L    LF       E EIR+ +++N+ I AI+ LP  +
Sbjct: 254 FLQYCIFMLK----DNGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 306

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T IAT + +   +   ++   + +IN       +R +      +  +   +      
Sbjct: 307 FKTTAIATNIIVFKKK---QKTNDILMIN-------VRKKNNLNVNLLLELITK------ 350

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            R   + SR+            +   L     + KT L +L
Sbjct: 351 -RSTTEISRLTSLNEISAHDYNLSASLYFRPQVKKTDLKQL 390


>gi|228288746|ref|YP_002841998.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51]
 gi|228014316|gb|ACP50076.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51]
          Length = 521

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 101/548 (18%), Positives = 181/548 (33%), Gaps = 80/548 (14%)

Query: 9   ASLANFIWKNAEDLWGDF-KHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFGG 64
            S  + +W  A     D  K T++ +       LR  +      E     + E Y +   
Sbjct: 10  NSFGDELWNIANIFRSDIVKPTEYLEEFSYLFFLRLFDEQEIYQENIAKELGEDYKSTIP 69

Query: 65  SNI-------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           S         D  ++ +  G  F   +E+            NL        D  ++I + 
Sbjct: 70  SEYRFFNWACDPRNYARSKG--FKTVTEFLDKMFLD---LANLPDTGDPKIDEDRSIIKK 124

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
             FS+   R++    + ++      ++L  D       +   YE L+ + G + +     
Sbjct: 125 I-FSNKTRRMQNDNTVIQVIDRLRLLKLPGDEGRKFDALGRGYEFLMYKLGQQGN--YGQ 181

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------- 228
           F TPR++V     ++           P     + DP  GTGGFL  A  +V         
Sbjct: 182 FFTPRNIVSFMVRII----------DPNPGEVILDPAAGTGGFLVKAFEYVKQKIERQIT 231

Query: 229 -DCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +     KI  +    +G E  P+   + +  + +    S    +L        + S   
Sbjct: 232 NEADKEIKIRELKHNLYGIEKAPDVFKLGLMNLRLHGDGSSNFENLDAL-----SGSVQG 286

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              ++     +NPPFG                   G F     +     +  +M +    
Sbjct: 287 AYKEKADVITTNPPFGP------------FSGEPTGNFKYKFKRFETYFIQAIMDMVK-- 332

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
                 GGR A V+    LFN         IRR L++   IEA+ +LP  +F   +   T
Sbjct: 333 -----PGGRVATVMLEGLLFN----ENYEGIRRDLVDKFKIEAVFSLPAGVFLPYSAAKT 383

Query: 406 YLWILSN-RKTEERRGKVQLINATDLWTSIRNEG-------KKRRIINDDQRRQILDIYV 457
            + +     K E+   KV   N       ++          KK  I         L+IY 
Sbjct: 384 DILVFRRPNKGEKTTDKVLFFNIESDGYELKPTRKPIGDCDKKGDIDGCGDLPLALEIYQ 443

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK-LSPLHQSFWL 516
             + G+   +     +    ++ +R       ++     RLE +    K L  L ++   
Sbjct: 444 KFKRGE--EIPQTEQYFVVDVEEIRKHDYRLDINVYRKVRLEEENADPKQLIELMETNLS 501

Query: 517 DILKPMMQ 524
           D +K + +
Sbjct: 502 DAMKRLNE 509


>gi|315638030|ref|ZP_07893215.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481878|gb|EFU72497.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 496

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 127/330 (38%), Gaps = 39/330 (11%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +  + L  T    N+           + +FED +       ++   LL ++         
Sbjct: 82  FINNELFPTLKALNITESTPLNQSIVRKVFEDLN-----NYMKDGYLLREVIDEIESSLK 136

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +    + +  +YE  ++   S  +  A +F TPR V      +L          SP +
Sbjct: 137 IHNRQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAVTEFMVEML----------SPKL 184

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRR 263
             ++ D  CGTGGFL  A + +    S      +     +G E +     +C   +LI  
Sbjct: 185 GESVADLACGTGGFLISAAHFLEKQVSLTSERKVFETSFYGVEKKSLPFLLCATNLLING 244

Query: 264 LES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +E+ + +   +           +L    +F   L NPP+G             ++ G   
Sbjct: 245 IENPNLKHGNAFEFSDFEDFDINLTKYPKFDIILMNPPYGG------------NERGNDI 292

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +  P   K S+ + LF+  + ++L       GR+A+VL    LF   A + +  ++R LL
Sbjct: 293 KHFPQEYKSSETADLFMALILHRLSY----KGRSAVVLPDGFLF--GADNAKINLKRKLL 346

Query: 383 ENDLIEAIVALPTDLFF-RTNIATYLWILS 411
            +  +  I+ LP  +F   T+I T L   +
Sbjct: 347 SDFNLYLILRLPKSVFAPYTSIPTNLLFFN 376


>gi|189499173|ref|YP_001958643.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189494614|gb|ACE03162.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 775

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 171/484 (35%), Gaps = 82/484 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
            + + ++         + +  +  GGS       ++   ++           +G+    N
Sbjct: 34  LIYKFMDD--------MDQAAIKAGGSPSFFVDDLENYAWTRLMDQR-----IGNQERMN 80

Query: 99  NLESYIASFS--DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                +  FS       +F    F S          L    K       + D      + 
Sbjct: 81  LYSEALIKFSQAKQLPELFRGI-FKSAFLPYRSPETLGLFLKEID----YFDYSHPEELG 135

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+L+    S+    A  F TPR ++     ++          +P     + DP CGT
Sbjct: 136 NAYEYLLSIMSSQG--DAGQFRTPRHIIDFIVDVV----------NPTKADKVLDPACGT 183

Query: 217 GGFLTDAMNHVADCGS--------------HHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           GGFL  +  H+ +                   +   +    G +++P    +    M + 
Sbjct: 184 GGFLVSSYKHILEQHDGKDDPKKKEKPLTPDERKKLMTNFEGYDIDPTMVRIAQVNMYLH 243

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           + +       +  I Q  +LS +     +F   L+NPPF       K  ++   K     
Sbjct: 244 QFK-------NPKIFQYDSLSSEERWNDKFDVILANPPF----MSPKGGIKPHSKFS--- 289

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S   +LF+ ++ N L       GRA I++    +F  ++G+   ++R+ L+
Sbjct: 290 ------IPSSRSEVLFVDYIMNHLRPK----GRAGIIVPEGIIF--QSGTAHKQLRKNLV 337

Query: 383 ENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E+  + A+V+LP+ +F   + + T + + +N   +    ++  +    +     + G  +
Sbjct: 338 EDG-LYAVVSLPSGVFAPYSGVKTSILLFNNELAKTST-EILFV---KIEQDGFDLGATK 392

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARLEA 500
           R I+ +     LDI      G+    ++ +   Y  + K+      +   D+  +A    
Sbjct: 393 RPISKNDLPTALDILNKWNTGE---KVENKLAVYVEKSKIAENGDYNLSGDRYRVATDYT 449

Query: 501 DITW 504
           +  W
Sbjct: 450 NAKW 453


>gi|290509518|ref|ZP_06548889.1| N-6 DNA methylase [Klebsiella sp. 1_1_55]
 gi|289778912|gb|EFD86909.1| N-6 DNA methylase [Klebsiella sp. 1_1_55]
          Length = 1304

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 98/526 (18%), Positives = 192/526 (36%), Gaps = 61/526 (11%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKA 113
           +++    +  +  +  +   Y     S           T  +L ++++S     + + + 
Sbjct: 25  RWIDIHDAEGEAVALFEEKDYHPLLPSYLRFQNWPHPITLTDLTAFVSSLVAYLARHDRQ 84

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR--VMSNIYEHLIRRFGSEVS 171
                +  + I +      L +     + I  +   +PD   ++S ++E ++        
Sbjct: 85  EIPVLNALNEIVQKLHETHLAQFTATVNWIASYARGMPDERQMLSTMFETVLNETEDM-- 142

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F  P    +L T ++          SP     +YDP  G+GGFL  A   V    
Sbjct: 143 -RAGYFTAPDVTTYLVTEIM----------SPEAGEKVYDPCSGSGGFLLSAFEKVRRSR 191

Query: 232 SHHKIPPI-LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               I        G E   +     +  +++    +     ++K   +G+  S+D     
Sbjct: 192 PDTGISDGGTSFIGCEARADVFLYGITRLILAG--ATNIHLMTKLPSEGTHTSRD----- 244

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   ++ P  G K+      +  E    E       L   +D +  F+ H+ + L+   
Sbjct: 245 KYDVVMTTPVTGAKY------ISSEASKNEF------LFPDTDSTGQFIQHVFSSLKTE- 291

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWI 409
              GRAAIV+    LF G A   + E+R++LL+   +EA+VALP   LF  + +   L I
Sbjct: 292 ---GRAAIVVPDGFLFRGGA---DRELRQYLLKEGAVEAVVALPAGTLFRHSTLRGNLLI 345

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---------E 460
           L   +  +R   +++++A+ L+   R+ G K   I       +++    R         +
Sbjct: 346 LRKNRV-KRTESIRMVDASLLFE--RSPGSKTLSITQANTDILVNASTDRDVRRTYDIIQ 402

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           +G +S   D  +   R    L        +D+  L   +     R    L+Q F+ D L 
Sbjct: 403 DGTYS-FFDISSPSERIFSNLEDFAWDVTVDELSLTGWDLTPRRRNDKELYQ-FFNDTLD 460

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
              +       +E F     KS E     +  + +     I    +
Sbjct: 461 ETSKIASLVSISEVFPGRVHKSTELFDSPLNKTDAVGYIRIKNLFQ 506


>gi|301348334|ref|ZP_07229075.1| putative restriction-modification protein [Acinetobacter baumannii
           AB056]
          Length = 508

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 126/325 (38%), Gaps = 52/325 (16%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  +L     + ++ K    ++L   ++   +  + +E+ +++  +  +    ++ TPR 
Sbjct: 187 TNLQLTNPVAVKEMIKELDKLKLS--SIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRH 243

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHKI 236
           +      L+          +P     +YDP CGTGGFLT+A +H+ D        S    
Sbjct: 244 ITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIK 293

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G+E+      +    M++         D    I Q  TL   + +   +   +
Sbjct: 294 LKHNTIFGREITSN-AKLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVI 343

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +N PF +K         K  KN              DG  + ++H           GGR 
Sbjct: 344 TNMPFSQKTSYSHLYENKLAKN--------------DGDGVCVLHCFK----ATKKGGRM 385

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+V+    LF     +  + +R++L EN  ++A+V+LP ++F     + T +   +N   
Sbjct: 386 ALVVPEGFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHN 441

Query: 416 EERRGKVQLINATDLWTSIRNEGKK 440
                 V   N T+   S+ +  +K
Sbjct: 442 GRTNSDVFYYNVTNDGLSLDSFRRK 466


>gi|256810495|ref|YP_003127864.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793695|gb|ACV24364.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 1068

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 165/464 (35%), Gaps = 52/464 (11%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG 131
           F K+         EY    +GS  +  ++   I    ++AK   + + F+  I    +  
Sbjct: 221 FCKIWDEKTTRKGEYYRFQIGSNESAKDVFDRIKKIYEDAKKK-DPYVFAEDIKL--EPE 277

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           ++Y + +    I L             +E  +  F          + TPR++++      
Sbjct: 278 IVYSVVEQLQEINL--KDTDLDTKGVAFERFMEDFF---KGKMGQYFTPREIINFMVEFA 332

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----------DCGSHHKIPPILV 241
           +   D    E   +   + DP CG+GGFL   ++ +           +   H        
Sbjct: 333 MLHFD----EDEYLNLKVLDPACGSGGFLLHVLDFIRRWAEGNYDKFEAYQHWHEFAKNN 388

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSN 298
            +G E+  +   VC   M++   +      +S +  +     + +    +   F   L+N
Sbjct: 389 IYGIEINEQISRVCKMNMILH--DDGHTNIISFDALEDFEKIEKIHKDFKKGSFDLILTN 446

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K +K +    + ++ G+               +LF+      L+     GG   I
Sbjct: 447 PPFGAKIKKSERKYIENYELGK-------GRTSQKTEILFIERCWEFLK----EGGILGI 495

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTE 416
           VL    L N         +R ++L    + A+++LP   F  +   + + L  L  +K  
Sbjct: 496 VLPDGILTNSTL----QYVRDFILNRFRVLAVISLPNFAFTHYGAGVKSSLVFLQKKKEG 551

Query: 417 ERRGK--VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTF 473
           E  G   + +  A  +         ++  + D     IL+ Y    + GK  + L++  F
Sbjct: 552 EDLGNYPIFMAIAEHIGYDATGRKDEKNDLPD-----ILEAYKEFLKTGKLKKNLNFEGF 606

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
              R ++   L   +  D+      +   +  K++ L +   + 
Sbjct: 607 IVYRNELEGRLDAYYYKDEFRELEKKLKKSKFKITTLGKIAHVF 650


>gi|163801595|ref|ZP_02195493.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174512|gb|EDP59314.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 639

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 154/437 (35%), Gaps = 64/437 (14%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS +     E+  F     R+    +LY +      I+L  D   D      +++L+   
Sbjct: 100 FSRHNWKKIENI-FEQIPFRIRSNKILYLVIHKLEEIDLFEDIEVD------FDYLLLNM 152

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +       + +PR ++    + L          +P  + T+YDP  GTGGF  +A+ H
Sbjct: 153 IKDSGSS-GAYYSPRPLIKAMVSAL----------NPEPLTTVYDPAMGTGGFFVEAIKH 201

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V +          L   G +L P  H + +  +L+  +      D+S      S L++D 
Sbjct: 202 VKNKS----YFNDLNFIGNDLSPFAHLIGMLNLLLNDI------DISGVSISDSLLNRDC 251

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              +++ + +S  PFGK           E    E    G           +FL H  +KL
Sbjct: 252 ---QQYDFVISGVPFGKV---------NELTKYEYYYHGY----SGSLEAMFLKHTMDKL 295

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIAT 405
                 GGRAAIV+    LF   +   E  ++R LL    +  +++LP   L   + +  
Sbjct: 296 ----AKGGRAAIVIPDGILFGNASHLDE--LKRQLLTQFNLHTVLSLPKGTLAPYSGVKV 349

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            +    N  +E+       I   +L T       K   I D        +Y  RE  + S
Sbjct: 350 SVLFFDNTVSEKD------IWFYELRTD--KPLSKLNSITDSDFEDFTSLYERREVSEHS 401

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            ++   +    +      L +SF L K              L    Q   +  ++     
Sbjct: 402 CLISKESLLQDKT-----LNLSFSLPKKEAGLKFDKQKMIALLKSEQLALVTSIEKHFDT 456

Query: 526 IYPYGWAESFVKESIKS 542
           +      E     ++K 
Sbjct: 457 MSRNFELEYIHHVALKD 473


>gi|217971595|ref|YP_002356346.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217496730|gb|ACK44923.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 818

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 127/417 (30%), Gaps = 56/417 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLG 92
           I     L+RLE      +       Y  F           K   G+       +      
Sbjct: 32  ITYLLFLKRLEDIDIKRQQRDLPSIYEGFETCKWSYIRQEKTNPGHLIDVVFPWLRELDK 91

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
                +   S +AS ++       D  F        K  +L         +       + 
Sbjct: 92  HFKAASEEHSELASLNN----RMADAYFQ---LDPNKGKVLSDAIDKIDELFARAGDGSA 144

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +M + +E+L+    +        F TPR ++     L+           P   + + 
Sbjct: 145 TQDIMGDTFEYLLSEMATAG--KNGQFRTPRHLIRFMVELM----------DPEPGQRVI 192

Query: 211 DPTCGTGGFLTDAMNHVADC-------------------------GSHHKIPPILVPHGQ 245
           DP  GTGGFL     ++                              +  I       G 
Sbjct: 193 DPAAGTGGFLFSTQQYLMRKYSATENLVLEWDGTPHRTDGAAATPDQYSAIHSGANFVGL 252

Query: 246 ELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGK 303
           + +     +    +++  + +    +  S + ++G      DL   + + + L+NPPF  
Sbjct: 253 DNDRTMARIGWMNLILHDITDPHLLQGDSLSKREGKPKQLSDLLASEVYDFVLANPPFTG 312

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             + D    +        G+       I++ S L  +     +      GGR A+++   
Sbjct: 313 IIDSDDLEPDSILFPRVGGKGKKKDDSITNKSELLFL---WLMLDLLRVGGRCAVIIPEG 369

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERR 419
             F          +RR LL   ++E +++LP  +F   T + T + I       + +
Sbjct: 370 VFF--GNTDAHMRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFRKETRRDDK 424


>gi|78064669|ref|YP_367438.1| N-6 DNA methylase [Burkholderia sp. 383]
 gi|77965414|gb|ABB06794.1| N-6 DNA methylase [Burkholderia sp. 383]
          Length = 605

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 146/401 (36%), Gaps = 54/401 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              +++I +  D+ KA   +         L KA  + ++     GI L        V+  
Sbjct: 213 KAAQNFINNLFDDLKAHHPEVFTDENERVLSKAATVERVIARLEGINL--KDTQGDVLGR 270

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E ++    +   +    F TPR++V     L  +  +    +         D   G+G
Sbjct: 271 AFEIMLSD--TFKGKDLGQFFTPREIVAFMLDLARENPEGPALDI-SKGERFLDGCAGSG 327

Query: 218 GFLTDAMNHVADCG-----SHHKIPPILVPHGQE------LEPETHAVCVAGMLIRRLES 266
           GFL  A   V            +   +L   GQE      +E +   +    M++  + +
Sbjct: 328 GFLIAAYEDVYKHALSSTIRGDERENLLRRLGQETFFACEIEEKAARLGKLNMIVHAVNA 387

Query: 267 DPRRDLSKNIQQGST---------LSKDLFTGKR--------FHYCLSNPPFGKKWEKDK 309
              + L +N                  D   GK+            L+NPPFGK  + + 
Sbjct: 388 QNAQWLHQNYLYNEERGGLKPLIEYEVDFGEGKKKRQIGSSSIDLILTNPPFGKSVKTEN 447

Query: 310 DAVEKEHKNGELGRFGPGLPKIS------DGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             ++ +  +        G P         D  +LF+ H    L+     GG+  IVL   
Sbjct: 448 VLLDYQFGHEVKTFKSAGRPPEKRAKNSQDSEVLFIEHYLRTLKP----GGKLLIVLPDG 503

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGK 421
            L N  A      +R ++ E+ +I+++++LP++ F  T   I T +  L  ++  + +G 
Sbjct: 504 VLSNATA----KPVRDYIREHAIIKSVISLPSETFASTGTSIPTNVVFLQKKRPGDVQGD 559

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           + +  A   +   R  G     + ++    IL+ Y   + G
Sbjct: 560 IFM--ARADYVGRRANGDP---LKENDLPFILEKYREWQTG 595


>gi|170718360|ref|YP_001783586.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826489|gb|ACA31860.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 461

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 161/472 (34%), Gaps = 72/472 (15%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           PD   D  +    E+   R      +  +   TP  +  L + L               +
Sbjct: 41  PDLSQDCFLQEFQENFADR------KSLKQDFTPSAICQLVSRL------------TPEV 82

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            ++ D   GTG                 K+ P    + QE   E  A  +  + +R + +
Sbjct: 83  DSVLDVCAGTGALTIA----------KWKVNPNATFYCQEYSKEAIAFLLFNLCVRGITA 132

Query: 267 DPRR------------DLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +              L++N Q     +  L + G +    +SNPP+  KW    D   
Sbjct: 133 EVKHCDVLTGETFAEYRLTRNGQYSDIENTKLDWRGLKVDCVVSNPPYSAKWNPVSDE-- 190

Query: 314 KEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                    RF   GL   +     F++H  + L+      G A  +L    LF G +  
Sbjct: 191 ---------RFEYFGLAPKNAADYAFVLHGLHHLK----EEGTAHFILPHGVLFRGNS-- 235

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E +IR+ L+E     +++ LP +LF    I T +     +        + +I+A DL+ 
Sbjct: 236 -EGKIRQKLIEQGYFSSVIGLPDNLFISAKIPTAILTFKKQ-----SSDIYVIDAADLFE 289

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
             ++      I+  +   Q+L  Y  R N  K + + +Y         +  P  +     
Sbjct: 290 KAKS----NNIMRPEHVNQVLTAYQLRHNIDKLAHLANYTEIQQNDFNLNIPRYVDKSEP 345

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
              +  L+       L+   +      +  + +    +G AE   K   +  +    +V 
Sbjct: 346 DPEIDLLKEAQELLDLTNDIEKSGQAFVAMLAELEMTHGSAED--KAEFEQVKQILAQVF 403

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
           A ++     I         +  +T+   E        E + +  LE+I+ YF
Sbjct: 404 APRTKEKKAIQQLISSKQGSLFITEQEVEQFTGFIEHELKIISQLETIKKYF 455


>gi|257466226|ref|ZP_05630537.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917383|ref|ZP_07913623.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691258|gb|EFS28093.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 267

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 86/249 (34%), Gaps = 34/249 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTRS 53
             T   A L   IW  A+++ G     DF + IL     R +   +         E    
Sbjct: 2   NETTQRAELHRKIWAIADNVRGAVDGWDFKQYILGILFYRFISENMTDFFDSAEQEAGDL 61

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
             R   L+   + +D           F   S+   + + +  T  NL + +A+       
Sbjct: 62  EFRYAELSDKEAEMDFRPNTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKAIEG 121

Query: 108 -------SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIEL-HPDTVPDRVMS 156
                   D+ K +FED D +S        EK   L  I    + I              
Sbjct: 122 SAVGFASEDDIKGLFEDVDTTSNRLGSTVAEKNKRLADILTGIASINFDDFKNNDIDAFG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  + S   +   +F TP+ V  L   L+++  + + K        +YDPTCG 
Sbjct: 182 DAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMEGKETINK--------VYDPTCGF 233

Query: 217 GGFLTDAMN 225
              +    N
Sbjct: 234 RVIIMTQAN 242


>gi|262183026|ref|ZP_06042447.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 533

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 138/410 (33%), Gaps = 58/410 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNT 96
              ++ L+      R    +K  A G      + F        + N  E           
Sbjct: 44  LLFIKDLDE-----RQVQIDKRRALGDPTATEDIFDASQQDLRWRNLIEDRDIARRKATI 98

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            N +  +I                ++    +E    L ++ +    +          +  
Sbjct: 99  INKVFPFIKEMGGTGFQE----HMANASFEIESEATLSRVMELIDQLHFSNK----DMKG 150

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+++ +  +  +     F T   ++ L  AL+           P   + + DP CGT
Sbjct: 151 DLYEYMLDKLSTSGTN--GQFRTTSHIIELLVALM----------EPTPQQRIIDPACGT 198

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPR 269
            GFL  A + +A                      G + +     +    M +   E    
Sbjct: 199 AGFLVAANDWIAHHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFEEPNI 258

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                  Q  +T        + F   L+NPPF      DKDAV+ + K+         + 
Sbjct: 259 SYRDSLQQLPTTF------DEAFDLVLANPPFAGSL--DKDAVDPKLKS---------VT 301

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 +LF+      L+     GGRAA+++    LF   +      +R+ L+E+  ++A
Sbjct: 302 TAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVEDQRLDA 355

Query: 390 IVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++ LP+ +F   + ++T +   +   +     +V   + T    S+ ++ 
Sbjct: 356 VIKLPSGVFKPYSGVSTAVLCFTRTDSGG-TDEVWFYDVTADGYSLDDKR 404


>gi|283782192|ref|YP_003372947.1| N-6 DNA methylase [Pirellula staleyi DSM 6068]
 gi|283440645|gb|ADB19087.1| N-6 DNA methylase [Pirellula staleyi DSM 6068]
          Length = 554

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 123/335 (36%), Gaps = 72/335 (21%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE L+    S        F TPR ++ L + L+          +P +   + DP
Sbjct: 193 DIQGDVYEMLLNEISSAG--KNGQFRTPRHIIKLISELV----------NPQLGHRICDP 240

Query: 213 TCGTGGFLTDAMNHV---------------------------ADCGSHHKIPPILVPHGQ 245
            CGT GFL DA  ++                                + K       +G 
Sbjct: 241 ACGTAGFLLDAYQYIVTQLARKKVKKQKFEPDEDGFIRTSVSGQLDQNKKDILEQSLYGF 300

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +     + +  +++  ++       + ++    TLSK       +   ++NPPF    
Sbjct: 301 DFDSTMVRLALMNLMMHGID-------NPHVDYQDTLSKSFTEEMEYDIVMANPPFTGS- 352

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 ++K   N  L        K +   +LF   +   L+     GG A I++    L
Sbjct: 353 ------IDKGDINEGL------TLKTTKTELLFTERIFTLLK----KGGTAGIIVPQGVL 396

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQL 424
           F   A     E R+ L+E   ++A+++LP+ +F     +AT + + +      R GK Q 
Sbjct: 397 F--GAAGAFVEARKKLVEEAELKAVISLPSGVFKPYAGVATAILVFT------RSGKTQH 448

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               +L         +R  ++  +   +++ + +R
Sbjct: 449 TWFYNLANDGMTLDDRRTRVDGSELPDVVEKWNAR 483


>gi|330902769|gb|EGH33773.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 200

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 19/206 (9%)

Query: 72  FVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDN---AKAIFEDFDFSSTIARL 127
           + +  G+   ++S +  L     TN  N L   +    +N      + E  DF+  + + 
Sbjct: 1   YKRDGGFWVPSSSRFKHLLNEAHTNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQS 60

Query: 128 EKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +   L  +    +F  + L         ++   YE+LI  F     +   +F TPR VV 
Sbjct: 61  KIPDLKLRQLISHFGQVRLRNSDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVR 120

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL           P +   +YDP CG+GG L  A   + + G   +        GQ
Sbjct: 121 LMVRLL----------RPELKHDIYDPCCGSGGMLIAAKEFIDEHGEDGRKAN---LFGQ 167

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRD 271
           E      ++    ML+  + +   ++
Sbjct: 168 EFNGTVWSIAKMNMLLHGISTADLQN 193


>gi|325122266|gb|ADY81789.1| type I restriction-modification system methyltransferase subunit
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 1313

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 177/499 (35%), Gaps = 61/499 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F LLR  +   E  +     +   +             A           ++TL S   R
Sbjct: 29  FLLLRWQDVKDEEKQFIAEFEGSEYVPLFPTTLQMRNWADLINPADVIEKINTLASHIER 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           NN       F+       +         +   A L+  + +    ++L P T P +++S+
Sbjct: 89  NNA----EKFNTAGFGYLKHLHNPLHHIQSIDASLMLPVIQWLCSLQLTPLTAP-KILSD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E ++            +F +   + HL   L+          +P    ++YDP  GTG
Sbjct: 144 IFERIL---TETRDSNDGEFSSSESLSHLIAELI----------NPKSGESIYDPCFGTG 190

Query: 218 GFLTDAMN-HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            FL  A N               L   G ++        +  +++  +   P   L+   
Sbjct: 191 NFLISAWNLFQLRQIKQQNSGNTLQVSGNDINISAFLTGLTKIVLSGV---PSTQLTLGN 247

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                 SKD      F   +++PP G K           H N    R      K  D + 
Sbjct: 248 SLDDNSSKDA----AFDIVVAHPPVGIK----------AHSNVHYYRHFQ--FKSPDITG 291

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+    ++L+      GRA IV+    LF G A   + ++R+ LL N +++A+V LPT 
Sbjct: 292 LFVQQAISRLKT----NGRAVIVVPEGFLFRGGA---DRDLRKHLLTNGMVQAVVGLPTG 344

Query: 397 LFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQIL- 453
           +    +NI   L +L+          VQ+++A +L      ++      ++ ++   ++ 
Sbjct: 345 VIISGSNIRGCLLVLNKNGNFHH---VQMVDAKNLKGLRAASKASSLFQLDAEKLSNLIL 401

Query: 454 -DIYVSREN-------GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLARLEADIT 503
              Y  RE+        + S  +D  T  Y   R+ V       + L      R E    
Sbjct: 402 GQDYREREDSSSRSYLDETSIQVDEDTEDYVEWRVSVPELAETDWDLTPRRRERNELLNA 461

Query: 504 WRKLSPLHQSFWLDILKPM 522
            +  +    + ++D L  +
Sbjct: 462 LKPFTKASDTSYVDQLSTI 480


>gi|168464564|ref|ZP_02698467.1| N-6 DNA Methylase family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632954|gb|EDX51408.1| N-6 DNA Methylase family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 417

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 139/401 (34%), Gaps = 73/401 (18%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSN 157
           N  SYI       K IF +           ++  +       + +   + +T+    + +
Sbjct: 62  NDNSYIKLNQKEFKLIFSNITLYD----FSQSRDIKNYISRITEVCNEYINTLSIHSILD 117

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++  LI        +      TP ++V     ++                + +DP CG+G
Sbjct: 118 LFTSLIEENRPPTQK----HYTPHEIVTFMGNII----------QAQKGESFFDPACGSG 163

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F+++ +               +   G E + +   +    ML+  L        S +  
Sbjct: 164 EFISEIIK------------NQVAISGSEYDVDRLKISKMKMLVNDL--------SPSNI 203

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             S  ++     K F   LSNPPF  K   D           E+     G P  S+    
Sbjct: 204 SPSYFTEGHNLKKNFDIILSNPPFSLKIPFDM----------EMHFCMYGKPPASNADFA 253

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +    L+      GRAAI+L    LF       E EIR+ +++N+ I AI+ LP  +
Sbjct: 254 FLQYCIFMLK----DNGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 306

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T IAT + +   +   ++   + +IN       +R +      +  +   +      
Sbjct: 307 FKTTAIATNIIVFKKK---QKTNDILMIN-------VRKKNNLNVNLLLELITK------ 350

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            R   + SR+            +   L     + KT L +L
Sbjct: 351 -RSTTEISRLTSLNEISAHDYNLSASLYFRPQVKKTDLKQL 390


>gi|239502429|ref|ZP_04661739.1| putative restriction-modification protein [Acinetobacter baumannii
           AB900]
          Length = 778

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 148/395 (37%), Gaps = 57/395 (14%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  +L     + ++ K    ++L   ++   +  + +E+ +++  +  +    ++ TPR 
Sbjct: 234 TNLQLTNPVAVKEMIKELDKLKLS--SIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRH 290

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHKI 236
           +      L+          +P     +YDP CGTGGFLT+A +H+ D        S    
Sbjct: 291 ITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIK 340

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G+E+      +    M++         D    I Q  TL   + +   +   +
Sbjct: 341 LKHNTIFGREITSN-AKLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVI 390

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +N PF +K         K  KN              DG  + ++H           GGR 
Sbjct: 391 TNMPFSQKTSYSHLYENKLAKN--------------DGDGVCVLHCFK----ATKKGGRM 432

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+V+    LF     +  + +R++L EN  ++A+V+LP ++F     + T +   +N   
Sbjct: 433 ALVVPEGFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHN 488

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
                 V   N T+   S+ +  +K     D+   + LD +       F +  +   F  
Sbjct: 489 GRTNSDVFYYNVTNDGLSLDSFRRK----IDENDLKNLD-FADLNKSDFDKYYNELGFLK 543

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
              +++R     +       + +++     KL  L
Sbjct: 544 VNPELIRSNDYIYNYAHYSNSHIKSKFPTIKLKEL 578


>gi|258627227|ref|ZP_05722015.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio mimicus VM603]
 gi|258580529|gb|EEW05490.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio mimicus VM603]
          Length = 241

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 25/250 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       +W  A  L G  + +++  V+L    L+ +    E  R  + +  +
Sbjct: 2   MAKAPTNKKGFEETLWDTATQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRQQLIDGGM 61

Query: 61  AFGGSNIDLESFVKVAGYSF---YNTSEYSLSTLGSTNTR---NNLESYIASFSDNAKAI 114
               + +D+  F +     F   Y    +  +     +     ++    I   +   +  
Sbjct: 62  ---EAFVDMPEFYQQDNVFFLEEYARWSFVKARAKQDDIALIIDSALKAIEGKNKALEGA 118

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYEHLIRRFGSE 169
            +D  FS      +K   L    +N             D   + ++  +Y++ + RF + 
Sbjct: 119 LQDNYFSHMGLETQKLASLIDAIENIDTYVHEESANECDMSEEDLVGRVYKYFLGRFAAT 178

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP+ VV L   +L                 +YDP CG+GG    ++  V  
Sbjct: 179 EGKDGGEFYTPKSVVTLLAEMLEPFQG-----------KIYDPCCGSGGMFVQSLKFVES 227

Query: 230 CGSHHKIPPI 239
                K  P 
Sbjct: 228 HQGRVKTSPF 237


>gi|169796762|ref|YP_001714555.1| putative restriction-modification protein [Acinetobacter baumannii
           AYE]
 gi|169149689|emb|CAM87580.1| conserved hypothetical protein; putative restriction-modification
           protein [Acinetobacter baumannii AYE]
          Length = 760

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 148/395 (37%), Gaps = 57/395 (14%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  +L     + ++ K    ++L   ++   +  + +E+ +++  +  +    ++ TPR 
Sbjct: 239 TNLQLTNPVAVKEMIKELDKLKLS--SIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRH 295

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHKI 236
           +      L+          +P     +YDP CGTGGFLT+A +H+ D        S    
Sbjct: 296 ITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIK 345

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G+E+      +    M++         D    I Q  TL   + +   +   +
Sbjct: 346 LKHNTIFGREITSN-AKLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVI 395

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +N PF +K         K  KN              DG  + ++H           GGR 
Sbjct: 396 TNMPFSQKTSYSHLYENKLAKN--------------DGDGVCVLHCFK----ATKKGGRM 437

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKT 415
           A+V+    LF     +  + +R++L EN  ++A+V+LP ++F     + T +   +N   
Sbjct: 438 ALVVPEGFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHN 493

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
                 V   N T+   S+ +  +K     D+   + LD +       F +  +   F  
Sbjct: 494 GRTNSDVFYYNVTNDGLSLDSFRRK----IDENDLKNLD-FADLNKSDFDKYYNELGFLK 548

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
              +++R     +       + +++     KL  L
Sbjct: 549 VNPELIRSNDYIYNYAHYSNSHIKSKFPTIKLKEL 583


>gi|237807924|ref|YP_002892364.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
 gi|237500185|gb|ACQ92778.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
          Length = 513

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 151/439 (34%), Gaps = 83/439 (18%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            ++   ++    ++    +    + L    V      +IYE+L+ +  S        F T
Sbjct: 111 MATADLQIRSEAVITAAVEMVDKLPLDKSDVK----GDIYEYLLSKLSSAGIN--GQFRT 164

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++ +   ++                T+ DP CGT GFL   M ++    S       
Sbjct: 165 PRHIIDMMIEMI----------DVQPTETVCDPACGTAGFLARTMEYLTRKYSSPESIYK 214

Query: 233 ---------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                          + +     +  G + +     V    M++  + +     ++    
Sbjct: 215 DEDGNPVYSGDLLAPYSEHINKEMFWGLDFDSTMLRVSAMNMMLHGVSN---AHITYQDS 271

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              +          F   L+NPPF  K   D+ +V           +     K     +L
Sbjct: 272 LNKSFVGKPQEENYFDKILANPPF--KGSLDETSVNP---------YVLKKVKTKKTELL 320

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+  +   L+L    GGR+A ++    LF   + S   ++R+ L+EN+ +EA+++LP+ +
Sbjct: 321 FVALILRMLKL----GGRSATIVPDGVLF--GSSSAHKDLRKELIENNQLEAMISLPSGV 374

Query: 398 F-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND---------- 446
           F     ++T + I +   + +R   V L +  D   S+ ++  K+    D          
Sbjct: 375 FKPYAGVSTGILIFTKGGSTDR---VFLYDMKDDGYSLDDKRIKKDHDGDIPDVIAKWKR 431

Query: 447 -------DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
                  +    I   +  +    F+  +D        + + R   + +  +     ++ 
Sbjct: 432 YTALYEKNDVATIEAEFSDKTKPAFTVSIDELKAQNYDLSLNRYKEVVYQEESYENPKV- 490

Query: 500 ADITWRKLSPLHQSFWLDI 518
                 KL  L      D+
Sbjct: 491 ---ILGKLKALENEILADL 506


>gi|296258260|gb|ADH04257.1| putative HsdM-type I modification subunit [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 165

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 22/180 (12%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            K    +EL     P   + + YE+LI +F S+  + A +F TP++V  L   L L   D
Sbjct: 4   IKAIGKLEL--VKTPGDTLGDAYEYLISQFASKSGKKAGEFYTPQEVSELLARLTLVGKD 61

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                      ++YDP  G+G  L +   +V +          +  +GQE+   T  +  
Sbjct: 62  ------YSSGMSVYDPAMGSGSLLLNFRKYVPNSSR-------ITYYGQEINTSTFNLAR 108

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEK 314
             M++  ++       ++ ++ G TL +D    +   F   + NPP+  KW  DK  ++ 
Sbjct: 109 MNMILHHVD-----LANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLDD 163


>gi|283954322|ref|ZP_06371843.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794121|gb|EFC32869.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 227

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 26/224 (11%)

Query: 79  SFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
            F+N S+++L TL +   N R N E+Y+  FS+N K I   F F + +  LE++ +L+ +
Sbjct: 11  GFFNYSQFNLQTLLNNPKNIRINFENYLDCFSENIKDIISKFKFKNQLDTLEESNILFGV 70

Query: 137 CKNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + F                  L    + +  M  ++E LIR+F  E +E A +  TPR+
Sbjct: 71  IERFCSPKVNFGIEDILDEKGNLIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPRE 130

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++ L T L+  P     K+   +   +YD  CG+GG LT++   + D     K    +  
Sbjct: 131 IIELMTHLVFLPVKEQIKKGTWL---IYDNACGSGGMLTESKEFITDPNGLIKSKANIHL 187

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS D 
Sbjct: 188 YGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSNDQ 224


>gi|189345678|ref|YP_001942207.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
 gi|189339825|gb|ACD89228.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
          Length = 846

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 128/372 (34%), Gaps = 62/372 (16%)

Query: 59  YLAFGGSNIDLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--A 111
           Y      + + E            +  Y  +++   +LG           IA   +N   
Sbjct: 37  YKFMDDMDAESEELGGKRKFFTGNFVRYGWAKFMDRSLGGHEMLGLYSEGIAKMPENPGI 96

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            A+F D  F +          L    K                + + +E+L+   GS+  
Sbjct: 97  PALFRDI-FKNAYLPYRDPETLKAFLKIIDEFTYDHSE----RLGDAFEYLLSVLGSQG- 150

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TPR ++     +L+          P    T+ DP CGT GFL  A  H+    
Sbjct: 151 -DAGQFRTPRHIIDFMVEILV----------PQKNETILDPACGTAGFLISAYKHILRTN 199

Query: 232 SHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +       L             G ++ P+   + +  + +             +I +  T
Sbjct: 200 TDTDGHSTLTPDEKGRLARNFKGYDISPDMVRLSLVNLYLHGF-------TDPHIFEYDT 252

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           LS +    +     L+NPPF       K  ++   +            +     +LF+ +
Sbjct: 253 LSSEERWNEFADVILANPPF----MSPKGGIKPHKRFS---------IQAKRSEVLFVDY 299

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FR 400
           +A  L       GRA I++    +F  +      E+R+ L+EN L+ A+++LP   F   
Sbjct: 300 MAEHL----TPAGRAGIIVPEGIIFQSQM--AYKELRKMLVENSLV-AVISLPAGCFNPY 352

Query: 401 TNIATYLWILSN 412
           + + T + IL  
Sbjct: 353 SGVKTSILILDK 364


>gi|313123146|ref|YP_004033405.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279709|gb|ADQ60428.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 491

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/436 (15%), Positives = 156/436 (35%), Gaps = 45/436 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E       + Y +   + +    +          T +  L  + +    
Sbjct: 35  MLFLKVYDDR-EKVWELTNDDYESIIPAGMHWREWATDNKDGKALTGDELLDFVNNKLLP 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +   +  +KAI +D  F      ++   LL ++       +   D     + ++
Sbjct: 94  ALKNITVTKDTPISKAIVKDA-FIDANNYMKNGVLLRQVVNVIDEQDFT-DPEDRHMFND 151

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++++  S  +    +F TPR +       L           P +   + D  CGTG
Sbjct: 152 IYEGILKQLQSAGNS--GEFYTPRALTDFIAETL----------KPKLGEKMADLACGTG 199

Query: 218 GFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +         +        G E + + + + V  +L+  +++      +  
Sbjct: 200 GFLTSTLNLLKPQIKTVEDQKKYNEAVFGIEKKGQPYILAVTNLLLHDVDNPDIIHGNSL 259

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +       +    ++F   + NPPFG     + D ++K           P   + S+ +
Sbjct: 260 EKN----ITEYTEKEKFDIIMMNPPFGG---AELDTIKKNF---------PTDLQSSETA 303

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            LF+  +  +L+      GR  ++L    +F+      +  I++ L  +  +  I+ LPT
Sbjct: 304 DLFMDLIMYRLK----DNGRVGVILPEGFMFSTD--GAKRNIKQKLFNDFNVHTIIRLPT 357

Query: 396 DLFF-RTNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIINDD---QR 449
            +F   T +AT +         ++    ++ + +    ++  R    +      +    R
Sbjct: 358 TIFSPYTTVATNIIFFEKTHKTQKTWFYRLDMPDGYKHFSKTRPMKLEHFDPVREWWNNR 417

Query: 450 RQILDIYVSRENGKFS 465
            +I D   + ++  +S
Sbjct: 418 HEIQDEDGNYKSKAYS 433


>gi|270719566|ref|ZP_06223326.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus
           influenzae HK1212]
 gi|270315414|gb|EFA27679.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus
           influenzae HK1212]
          Length = 219

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 24/214 (11%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F     I  +    +L  + + F    I L P    D             M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           R+F  E +E A +  TPR+V+ L T L+ DP   
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKD 219


>gi|299137475|ref|ZP_07030657.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8]
 gi|298600880|gb|EFI57036.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8]
          Length = 526

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 80/509 (15%), Positives = 169/509 (33%), Gaps = 104/509 (20%)

Query: 1   MTEFTGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLEC-------- 46
           M +      SL   +W        +  L    +       I     +++L+         
Sbjct: 1   MLQLNAKLLSLIRALWDRFWAGGISNPL-SAIEQ------ITYLLFMKQLDELDLKREKD 53

Query: 47  -ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                     R K   +   +   +  +  A   +    E     +   + +  +  +I 
Sbjct: 54  AEFTGDHFTSRFKGKFYLPHDTAKKEPIDKATLRWSYFKEMKAELMLP-HVQQKVFPFIK 112

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPD-----RVMSNI 158
             +    +       ++ +  +  A LL         I  E+  +   D      +  ++
Sbjct: 113 GLNGKGSSFTHH--MANAVFLIPSANLLQGAIATIEDIFAEIEREAREDGHLFQDIQGDV 170

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+    +        F TPR ++ L + L+          +P +   + DP CGT G
Sbjct: 171 YEMLLNEISTAG--KNGQFRTPRHIIKLVSELV----------NPQLGHRICDPACGTAG 218

Query: 219 FLTDAMNHV---------------------------ADCGSHHKIPPILVPHGQELEPET 251
           FL DA  ++                                 +K       +G + +   
Sbjct: 219 FLLDAYQYIITQLAKKKKKRQALTPDEDGFVRSSVSGMLTQDNKDILEQSLYGYDFDTTM 278

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             + +  +++  ++       + N+    TLSK     + +   ++NPPF    +K  D 
Sbjct: 279 VRLALMNLMMHGID-------NPNVDYQDTLSKKFTEEEEYDIVMANPPFTGSIDK-GDI 330

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            E    N             +   +LF   +   L+     GG A I++    LF   +G
Sbjct: 331 NESLQLN------------TTKTELLFTERIFTLLKT----GGTAGIIIPQGVLF--GSG 372

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
               E R+ L+E+  ++A+++LP+ +F     +AT + + +      R GK +      +
Sbjct: 373 GAFVEARKKLVEDAELKAVISLPSGVFKPYAGVATAILVFT------RGGKTKHTWFYRI 426

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                +   KR+ I++     ++  + +R
Sbjct: 427 DKDGLSLDDKRQRISESDLPDVVAQWKAR 455


>gi|332880948|ref|ZP_08448618.1| type I restriction modification DNA specificity domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681122|gb|EGJ54049.1| type I restriction modification DNA specificity domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 977

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 127/340 (37%), Gaps = 48/340 (14%)

Query: 86  YSLSTLGSTNTRNNLESY-IASFSDNAKAIFEDFDFSS--TIARLEKAGLLYKICKNFSG 142
           +  +     + +N   +  I   +            +   T  ++  A +L +I      
Sbjct: 204 FDATACSWDSIKNIPFTTRIDYINKTVYEKLNSLYNTDIFTPLQIRDASILKEIMDKLD- 262

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
             L    V   V  + +E+ + +  +       ++ TPR +V     L+          +
Sbjct: 263 -PLTLTDVDSDVKGDAFEYFL-KASTATKNDLGEYFTPRHIVKTMVRLV----------N 310

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
           P +  T+YDP CGTGGFL ++  ++    A   ++ K+      +G E+   T  +    
Sbjct: 311 PQIGETIYDPFCGTGGFLIESFRYIYNNMARTEANIKMLREHTVYGNEI-TNTARITKMN 369

Query: 259 MLIR--RLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVE 313
           M++      +   RD   N   G    +D    +    +   L+N P+ +K         
Sbjct: 370 MILAGDGHSNINMRDSLANPIDGKATYRDNDGSEYHYGYDIVLANMPYSQK--------- 420

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              K+GEL          ++G  + + H    +    +  GR A+V+    LF       
Sbjct: 421 --TKHGELY-----DLPSTNGDSICVQHCMKAI-NSTSPNGRMALVVPEGFLFRKDLT-- 470

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
               R +LLEN  +++I++LP  +F   T + T +   + 
Sbjct: 471 --RTREYLLENCQLQSIISLPQGVFLPYTGVKTDIIYATK 508


>gi|222055951|ref|YP_002538313.1| N-6 DNA methylase [Geobacter sp. FRC-32]
 gi|221565240|gb|ACM21212.1| N-6 DNA methylase [Geobacter sp. FRC-32]
          Length = 818

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/448 (14%), Positives = 134/448 (29%), Gaps = 63/448 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           I     L+RLE      +        A         +        +       +      
Sbjct: 32  ITYLLFLKRLEDIDLKRQQRGLPSIYADNETCKWGYIRQEKTNPSHLINVVFPWLRELDK 91

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
                ++  S +AS ++       D  F        K  +L         +       + 
Sbjct: 92  HFKPESDEPSELASLNN----RMADAYFQ---LDPSKGKVLSDAIDAVDQLFARAGEGSA 144

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +M + +E+L+    +        F TPR ++     LL           P   + + 
Sbjct: 145 AQDIMGDTFEYLLSEVATAG--KNGQFRTPRHLIRFMVELL----------DPEPSQRVI 192

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHK-------------------------IPPILVPHGQ 245
           DP  GTGGFL     ++    S  +                         I       G 
Sbjct: 193 DPAAGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQYAAIHHGANFVGL 252

Query: 246 ELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           + +     +    +++  L +    +  S + + G      L   + + + L+NPPF   
Sbjct: 253 DNDRTMARIGWMNLILHDLTDPHLLQGDSLSKRDGKPELARLMESETYDFVLANPPFTGT 312

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +    + +       R       I++ S L  +     +      GGR A+++    
Sbjct: 313 VDSNDLEKDSKIFPRAAERGKKKEDAITNKSELLFL---WLMLDLLQVGGRCAVIIPEGV 369

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG--- 420
           LF          +RR LL   ++E +++LP  +F   T + T + I       + +    
Sbjct: 370 LF--GNTDAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFRKETRRDDKQTFT 427

Query: 421 -----KVQLINATDLWTSIRNEGKKRRI 443
                + + +   ++     +   KR  
Sbjct: 428 GTTAPRTEYVWFYEVEEDGYSLNAKRNE 455


>gi|282900511|ref|ZP_06308456.1| Type I restriction-modification system methyltransferase subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194611|gb|EFA69563.1| Type I restriction-modification system methyltransferase subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 187

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 101/177 (57%), Gaps = 3/177 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     NFIW  A+ +   FK   +  VILPFT+LRRLEC L+PT+  V E Y  +   
Sbjct: 2   QNFGEKVNFIWSIADLIRDTFKRGKYQDVILPFTVLRRLECVLQPTKVEVLEAYDHYKNK 61

Query: 66  NIDLESF-VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +L+SF  K +G++FYN++ Y    L     +   NL+ YI SFS N + + E FDF +
Sbjct: 62  LDNLDSFLCKKSGFAFYNSAPYDFQKLLDDPKHLAANLKLYINSFSANMREVLEKFDFPN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI +LE++ LL+ + + F  I+LHPD V +  M  I+E LIR+F   + E   +  T
Sbjct: 122 TIDKLEQSELLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFT 178


>gi|282881941|ref|ZP_06290586.1| type I restriction-modification system methyltransferase subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281298216|gb|EFA90667.1| type I restriction-modification system methyltransferase subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 983

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 133/383 (34%), Gaps = 61/383 (15%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS--TIARLEKAGLLYKICKNFSG 142
            +  +    +     + + I   +        D   +   T  ++    +L +I      
Sbjct: 205 NFENACSWDSIKNIPISTRIEYINKTVYEKLNDLYETDIFTPLQIRDTSILKEIMDKLD- 263

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
             L    V   V  + +E+ + +  +       ++ TPR +V     L+          +
Sbjct: 264 -PLTLTDVDSDVKGDAFEYFL-KASTSTKNDLGEYFTPRHIVKTMVRLV----------N 311

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
           P +  T+YDP CGTGGFL ++  H+    A   ++ K+      +G E+   T  +    
Sbjct: 312 PQIGETIYDPFCGTGGFLIESFRHIYNNMARTDANLKMLREKTVYGNEI-TNTARITKMN 370

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++                       D  +  +    L+NP  GK    D+   E  +  
Sbjct: 371 MILAG---------------------DGHSNIKMKDSLANPIDGKSTYIDEKGEEHHNGY 409

Query: 319 GELGRFGPGLPKIS----------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             +    P   K            +G  + + H    ++      GR A+V+    LF  
Sbjct: 410 DIVLANMPYSQKTKYGNLYDLPSNNGDSICVQHCIKAVDSASE-NGRIALVVPEGFLFRK 468

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW----ILSNRKTEERRGKVQ 423
                  + R +LLEN  ++++++LP  +F   T + T +     +     + E+R    
Sbjct: 469 DLT----KTREYLLENCQLQSVISLPQGVFLPYTGVKTDIIYATKVNRKISSSEKRKDFW 524

Query: 424 LINATDLWTSIRNEGKKRRIIND 446
             +      S+ N  +K    +D
Sbjct: 525 YFDVKSDGYSLDNHRRKLDTPSD 547


>gi|307827039|ref|ZP_07656760.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
 gi|307732328|gb|EFO03271.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
          Length = 172

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 31/198 (15%)

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +         + P  L   GQE++  T A+      +          
Sbjct: 1   PTCGSGSLLLKASD---------EAPRGLTIFGQEMDNATSALARMNSRV------STTT 45

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           L   I +G+T++   +       K F + ++NPPF  K            +  E  RF  
Sbjct: 46  LPPKIWKGNTIADPQWKDGNGKLKTFDFAVANPPFSNKNWTSG----INPQEDEFDRFVW 101

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   +G   FL+H+   L+      G+ A++L    LF   A   E+ IR  L++   
Sbjct: 102 GIPPEKNGDYTFLLHILKSLK----STGKGAVILPHGVLFRSNA---EARIRENLIKQGY 154

Query: 387 IEAIVALPTDLFFRTNIA 404
           I+ I+ LP +LF+ T I 
Sbjct: 155 IKGIIGLPANLFYGTGIP 172


>gi|91206234|ref|YP_538589.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|157827849|ref|YP_001496913.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|91069778|gb|ABE05500.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|157803153|gb|ABV79876.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 517

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 132/361 (36%), Gaps = 35/361 (9%)

Query: 69  LESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA-- 125
           +E F + A   F    SE +  +  ++    + +  I   + +     ++          
Sbjct: 173 IERFSEFANILFLKLLSENNEKSWWNSIKAQSDDDIIGYINGHVIEQIKNKYGGDVFTPI 232

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L  +  L  I      + L    + D    N +E+ + +  S   +   ++ TP++++ 
Sbjct: 233 SLSNSHTLRHIIDAIDPLILSSTNIKD----NAFEYFLEKTRSTC-DYLGEYFTPKNIIK 287

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPIL 240
           L    +           P    T+YDP CG+GGFLT+A  ++ +          K     
Sbjct: 288 LTINYV----------DPKFGETVYDPFCGSGGFLTEAFKYIKENNIINTDEDLKRLRHN 337

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +G+E+   T  +    M++        + ++  ++    +        +F   ++N P
Sbjct: 338 TLYGREI-TTTARIAKMNMILHGDGHSGIQQINS-LENSKYIRPTTNQTLKFDIIVTNMP 395

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F ++  K      K      +          ++G    + H    L      GGR A+V+
Sbjct: 396 FSQEITKKTIKNGKTVTENHIAHLYYNGIAKNNGDAACVFHCLQNLR----EGGRMALVV 451

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN-RKTEER 418
               LF     +    +R++LL    ++ +++LP   F   T + T +   ++  K   +
Sbjct: 452 PERFLFRRDTAA----VRQFLLSKAKLQTVISLPQGTFLPYTGVKTSILYFTDAHKPNYQ 507

Query: 419 R 419
           R
Sbjct: 508 R 508


>gi|294502090|ref|YP_003566155.1| Type I restriction-modification system, M subunit [Salinibacter
           ruber M8]
 gi|294342074|emb|CBH22739.1| Type I restriction-modification system, M subunit [Salinibacter
           ruber M8]
          Length = 462

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 80/472 (16%), Positives = 154/472 (32%), Gaps = 59/472 (12%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN----IDLESF 72
           K  +D+ G           L     + +       R  +R+     G  +     DL  F
Sbjct: 34  KAVQDVRGTL---------LSLIFYKAVSD---TYRGQLRKWTEELGDEDLARDSDLYRF 81

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
               G+ +    E            N     I   +    A     D+    A  ++  L
Sbjct: 82  TVPQGHGW---EELRAQEENVDRFLNESLRAIEDANRQRLAGISRVDYVREEALTDR--L 136

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++ ++ S  +L  + +   V+   +     +  ++   G +   T   +  L   L+ 
Sbjct: 137 LNRLVEHLSQYDLSLERIRPNVLGRAFVDF-AQVLTDKKRGNQPPETSETIARLMVRLVA 195

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
             +             +YDP CG G  L +   H  +     + P  L   GQE++P+  
Sbjct: 196 PFE---------AGDRIYDPACGIGRLLMEVARHHRE--EQQEDPTHLFLAGQEVDPDQA 244

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN-PPFGKKWEKDKDA 311
           A+    + I        R  S           +     +F   L++ PP G+K   D   
Sbjct: 245 ALARMAIAISGFHGRIERGDSLR----DPKFTEGKALSQFDCVLADLPPPGQKPLPDV-- 298

Query: 312 VEKEHKNGELGRFGPGLP-KISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                ++   GRF         +G    FLMH+ ++L       G AA+ +    L    
Sbjct: 299 -----QDDPYGRFDWTDDLPGQNGDTWAFLMHITSQL----GEEGEAAVTVPRPAL---- 345

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
               E  +R+ L+  +L+ A++ L + +F        L +L     E   G++      D
Sbjct: 346 -QEAEPGLRKELVTRNLLRAVIGLDSAVFEDVPTGKVLLLLREDDVEAAGGEILFYQTPD 404

Query: 430 -LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             +  +       R  + ++  +  D+      G   R++ +         +
Sbjct: 405 ADYVQVERGRVGLRGKSAERIAE--DVKSQAVEGDAGRVVPHDEIRRHDYAL 454


>gi|111222732|ref|YP_713526.1| Type I restriction enzyme, M protein [Frankia alni ACN14a]
 gi|111150264|emb|CAJ61961.1| Type I restriction enzyme, M protein [Frankia alni ACN14a]
          Length = 506

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 138/417 (33%), Gaps = 64/417 (15%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     +RRL+       +           +   +E  V          S +    LGS 
Sbjct: 32  ITYLMFIRRLDAIQSTMMN-------KAKRTGRPIERPVYSDATDELRWSRFR--ALGSP 82

Query: 95  N-----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           +      R+ +  ++           E          +  A LL K+      + L    
Sbjct: 83  DEMFAVVRDRVFPWLRELGGEGSTYQEH--MRGARFTIPTANLLAKVVDMLDALPLD--- 137

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  +        F TPR ++ L   +           +P     +
Sbjct: 138 -EHDTKGDLYEYMLSKIATAG--QNGQFRTPRHIIQLMVEMT----------APTPGDRI 184

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIR 262
            DP CGT GFL ++  ++              +     + HG + +     +    ML+ 
Sbjct: 185 CDPACGTAGFLVESAAYLGRTHPETLLDPGARRHFGHEMFHGFDFDNTMLRIGSMNMLLH 244

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   + D+        + + D      +   L+NPPF    + +  A           
Sbjct: 245 DVE---QPDIRYRDSLAQSAAGDAGE---YSLVLANPPFAGSLDYETTA----------- 287

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R    + +     +LF              GGRAA+++    LF   +     E+RR L+
Sbjct: 288 RDLLAVVRTKKTELLF----LALFLRLLGLGGRAAVIVPDGVLF--GSTRAHRELRRILV 341

Query: 383 ENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           E+  +EA+V LP  +F     ++T +   +   +      V   + T    S+ ++ 
Sbjct: 342 EDHKMEAVVKLPGGVFKPYAGVSTAILFFTRTDSGG-TDDVWFYDVTADGWSLDDKR 397


>gi|315446768|ref|YP_004079647.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315265071|gb|ADU01813.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 694

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 103/281 (36%), Gaps = 38/281 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +    ++   + ++RR   E    A   +    +V+   + LL    +  K       
Sbjct: 170 DGIEPDRLAIAADEVLRRGSGERGRAAGYGVGEHGIVNSRVSELLSNLASSTKG------ 223

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG    L       A  G            G ++      +      +  L+++
Sbjct: 224 LVYDPACGIAEALVRTRTKRAGGGR---------LVGHDINVRAIRIARMRSFLHELDAE 274

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +    L +D     R    ++ PPFG  W + ++  +         R+  G
Sbjct: 275 --------FECADVLLEDPAPDLRADTVVAEPPFGMDWSRSQNIAD--------PRWAFG 318

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  ++  + +L H    L+      G A +V S++PL    + +    IR  LL +  I
Sbjct: 319 IPPANNSELAWLQHAIAHLKPE----GSAYVVTSTAPLTARGSSAA---IRAELLRSGWI 371

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           EA++ LP  +   T I   LW+L           V LI+A+
Sbjct: 372 EAVILLPPKMLPHTTIPVALWVLRQADHPSNTVDVLLIDAS 412


>gi|297520536|ref|ZP_06938922.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli OP50]
          Length = 304

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 118/355 (33%), Gaps = 67/355 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+          +    +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKM------CKETGQEAEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY               RN L    A      +A+F++ + +  
Sbjct: 54  YRWDDLKSRIGQEQLQFY---------------RNLLVHLGADNQKLVQAVFQNVNTT-- 96

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 97  ---ITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     LL           P     + DP  GT GFL +A  +V           G  
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              +NPPFG     +                   +   S+  + F+ H+   L  
Sbjct: 262 IVATNPPFGSAAGTNITRTL--------------VHPTSNKQLCFMQHVIETLHP 302


>gi|294813863|ref|ZP_06772506.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326442281|ref|ZP_08217015.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294326462|gb|EFG08105.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 752

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 136/412 (33%), Gaps = 64/412 (15%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASF----------------SDN 110
           + F +  G   + TSE+    L   +        + Y+                    + 
Sbjct: 81  DRFRRALGDRRFITSEFVHHLLARQDRFRGEIASDEYLKLLLALVYAWGRSGTDATRGEA 140

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +     FDF+  IA   +   L                      + +++ L+  + S  
Sbjct: 141 YQEALGLFDFAPRIAGHRETADLADFV-------FQQVPARREECAAVFDLLLDHYRSTQ 193

Query: 171 SEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                 +F TPR V      LL          +      ++DP C  G  LT     +A+
Sbjct: 194 GRRDGGEFFTPRSVARTMARLLA--------AAGHPPERVHDPFCRAGEVLTAL---LAE 242

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +  +        G +      A+    + +   E      L   ++     +     G
Sbjct: 243 LPAQAEPLVTGSAPGVD----ALALARMNLTLHGAE---EAALRHRMEIEDPFAGPG-EG 294

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
               +  +NPPFG K   +             GR  P  P  S G + +L H+   L   
Sbjct: 295 HGADWVATNPPFGFKLSDEA--------RERWGRPWPYGPPGSRGDLAWLQHVVESL--- 343

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRAA+V+ +   F   AG     +R  ++ + ++E ++ LP  LF  T I   +W+
Sbjct: 344 -APGGRAAVVMPNGAGF---AGGRAQTVRARMVHDGVVECVMELPPHLFSDTAIPVSIWM 399

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           L+  +   RR  V  ++ + L       G   R   D     ++  Y +  N
Sbjct: 400 LTRPRPGTRRRDVLFVDGSALGAM---TGPASREFTDADIAALVGAYSTWRN 448


>gi|254390385|ref|ZP_05005602.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197704089|gb|EDY49901.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 814

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 136/412 (33%), Gaps = 64/412 (15%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASF----------------SDN 110
           + F +  G   + TSE+    L   +        + Y+                    + 
Sbjct: 143 DRFRRALGDRRFITSEFVHHLLARQDRFRGEIASDEYLKLLLALVYAWGRSGTDATRGEA 202

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +     FDF+  IA   +   L                      + +++ L+  + S  
Sbjct: 203 YQEALGLFDFAPRIAGHRETADLADFV-------FQQVPARREECAAVFDLLLDHYRSTQ 255

Query: 171 SEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                 +F TPR V      LL          +      ++DP C  G  LT     +A+
Sbjct: 256 GRRDGGEFFTPRSVARTMARLLA--------AAGHPPERVHDPFCRAGEVLTAL---LAE 304

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             +  +        G +      A+    + +   E      L   ++     +     G
Sbjct: 305 LPAQAEPLVTGSAPGVD----ALALARMNLTLHGAE---EAALRHRMEIEDPFAGPG-EG 356

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
               +  +NPPFG K   +             GR  P  P  S G + +L H+   L   
Sbjct: 357 HGADWVATNPPFGFKLSDEA--------RERWGRPWPYGPPGSRGDLAWLQHVVESL--- 405

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRAA+V+ +   F   AG     +R  ++ + ++E ++ LP  LF  T I   +W+
Sbjct: 406 -APGGRAAVVMPNGAGF---AGGRAQTVRARMVHDGVVECVMELPPHLFSDTAIPVSIWM 461

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           L+  +   RR  V  ++ + L       G   R   D     ++  Y +  N
Sbjct: 462 LTRPRPGTRRRDVLFVDGSALGAM---TGPASREFTDADIAALVGAYSTWRN 510


>gi|54024027|ref|YP_118269.1| putative restriction-modification system
           endonuclease/methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015535|dbj|BAD56905.1| putative restriction-modification system
           endonuclease/methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 966

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 45/305 (14%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +  D   +++YEHL+ +  +        F TP  +  L  A+           +PG    
Sbjct: 136 STGDAEAADLYEHLLAKVATAG--RFGAFRTPLHLTALMVAMT----------APGPDDE 183

Query: 209 LYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + DPTCGTGG LT A   +    +      K       HG + +     +    + +   
Sbjct: 184 VCDPTCGTGGLLTAAAQFMLTSRSGTAQQSKAEVSGRLHGFDFDRTMLRLSSMRLALHGY 243

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +   R       + +   +     +R+   L+NPPF          V+ E    EL   
Sbjct: 244 GAADLR------HRDNLSVEAGTEFERYSVVLANPPFAGS-------VDYETAAPEL--- 287

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                +     +L  + +   L+     GGRAA+++    LF   A   E  +RR L+E 
Sbjct: 288 -LAAVRTKKSEILHPIAILRLLKP----GGRAAVIVPDGLLFGSTAAHAE--LRRILVEE 340

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +EA+V LP+  F     ++T +   +        G+   +   DL     +   +R  
Sbjct: 341 HGLEAVVKLPSGTFKPYAGVSTAILFFTK-----YAGQTDYVWFYDLKADGWSLDDQRAP 395

Query: 444 INDDQ 448
           +  + 
Sbjct: 396 LLPED 400


>gi|166363241|ref|YP_001655514.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166085614|dbj|BAG00322.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 292

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 106/307 (34%), Gaps = 37/307 (12%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +  ++   +WK A+ L    ++   ++   ++    LR         +  V       GG
Sbjct: 6   NIEAIEKKLWKAADTLRANSNYASNEYFLPVMGLIFLRHAYSRFLKVKREVEADLPKRGG 65

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               L     +   + Y   +     L     S N   +L   + S   +          
Sbjct: 66  KTRSLTKEDFLCKGAIYLQEKAQFDFLVALPDSVNRSTSLMEAMLSIEGDYPP------L 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
              + + E   L   +  N   I L+P+        +   IYE+ + +F +  +    +F
Sbjct: 120 GGILPKTEYQELDNVVLGNLLRI-LNPEELKKADGDIFGRIYEYFLTQFANLKAHDNGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V L    +L+PD  L          ++DP CG+GG    + + V         P
Sbjct: 179 FTPVSLVSLIAN-VLEPDHGL----------VFDPACGSGGMFVQSAHFVER---QRINP 224

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            +L   G E  P T  +    + +  LE D ++ ++            L    +  Y ++
Sbjct: 225 QMLTFKGLEKNPTTIRLAKMNLAVHGLEGDIQKAIT-------YYEDPLALAGKVDYVMA 277

Query: 298 NPPFGKK 304
           NPPF   
Sbjct: 278 NPPFNVD 284


>gi|239833255|ref|ZP_04681583.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821318|gb|EEQ92887.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 865

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 133/395 (33%), Gaps = 85/395 (21%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT--RNNLESYIASF-----SDNA 111
           Y      +++ E       +   +   Y  + L +     ++ L +Y  +      ++  
Sbjct: 37  YKFMDDMDLEAEELGGERRFFTKDYERYRWAKLVAPGVSGQDMLNTYSEALTNMVQNEGL 96

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             +F D  F +          L    +  +             + + +E+L+   GS+  
Sbjct: 97  PKLFRDI-FRNAYLPYRDPETLRAFLREINSFTYDHSEK----LGDAFEYLLSVLGSQG- 150

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TPR ++     ++          +P     + DP CGT GFL  A  H+    
Sbjct: 151 -DAGQFRTPRHIIDFMVEII----------NPQKNEVIMDPACGTAGFLISAYKHILKQN 199

Query: 232 S---------------------------------HHKIPPILVPHGQELEPETHAVCVAG 258
           S                                   +        G ++ P+   + +  
Sbjct: 200 STGVVNSNGASTEGDAAEQALESPMRYPGDLLQPDDRARLARNIRGYDISPDMVRLSLVN 259

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           + +              +++  TL+ +    +     L+NPPF       K  ++     
Sbjct: 260 LYLHGF-------ADPKVEEYDTLTSEDKWTETADVILANPPF----MSPKGGIKPH--- 305

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               RF     +     +LF+ ++A  L       GRAAIV+    +F  ++ S    +R
Sbjct: 306 ---TRFQ---VQSKRSEVLFVDYIAEHL----TPNGRAAIVVPEGIIF--QSQSAYVALR 353

Query: 379 RWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           + L+EN  + A+++LP  +F   + + T + IL  
Sbjct: 354 KMLVENH-LAAVISLPAGVFNPYSGVKTSILILDR 387


>gi|312899539|ref|ZP_07758868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|311293312|gb|EFQ71868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
          Length = 310

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 123/330 (37%), Gaps = 33/330 (10%)

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRD------------LSKNIQQGSTLSKD 285
           P    + +E         +  + IR + +                 L+K+ +  S    D
Sbjct: 1   PDAQFYCEEFSDRALPFLLFNLAIRNINAVVLHGDSLSREFKAIYKLTKSTEFSSIEIVD 60

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +    + NPP+   W   K+ +E+E  +         L   S     FL+   ++
Sbjct: 61  EVPATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQ 115

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T
Sbjct: 116 LK----ENGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPT 168

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            L +L   +  +    +  I+A+  +   +       ++ D+   +IL+++ +R+   KF
Sbjct: 169 VLLVLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQARKAVDKF 221

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S ++           +  P R     +   +  L   +   K +    +     L  MM 
Sbjct: 222 SSVVTIEELKENDFNLNIP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKMMN 280

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASK 554
            +           +   S  ++ +  K ++
Sbjct: 281 DLVGTTPEADRQIKEFASFFSEHVGYKDNQ 310


>gi|168698328|ref|ZP_02730605.1| Type I site-specific deoxyribonuclease, methylase subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 207

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 319 GELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
            E  RF   G+   S     FL+H  + L+      G  AI+L    LF G A   E  I
Sbjct: 2   SEDPRFKAHGVAPKSAADFAFLLHGLHDLK----DDGVMAIILPHGVLFRGGA---EERI 54

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  LL +  I+ ++ LP +LF+ T I   + +L   K  E    V  INA + +      
Sbjct: 55  RTKLLTDGHIDTVIGLPPNLFYSTGIPVCVLVLKKCKKPE---DVLFINAAEHFAK---- 107

Query: 438 GKKRRIINDDQRRQILDIYVSREN--GKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKT 493
           GK++  +  +   +I+  Y  R     +++R +  +        + + R +  +    + 
Sbjct: 108 GKRQNRLEPEHIARIIATYQDRPEKVERYARRVGMKEIEANEYNLNISRYVSTAEQEGEV 167

Query: 494 GLARLEADITWRKLS 508
            L  + +++   + +
Sbjct: 168 KLDEVHSELVAIENA 182


>gi|264677662|ref|YP_003277568.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208174|gb|ACY32272.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 253

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 56/232 (24%)

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           R    L       L ++ TWR+   + Q+      K    +   +   E  V +++K+  
Sbjct: 29  REEIALSPKNRKELLSEATWREQRDIMQAAQQLAEKIGTGEFLDFNRFEDIVDDALKA-- 86

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG------------------------- 579
              L +K +       +NA   +D RA+ V                              
Sbjct: 87  ---LGLKLAAPARKQILNAVSWRDERAEKVIKKVHKLNAAKLNDLLNQLGTTRDKLGDYG 143

Query: 580 ----------EWIPDTNLTEYENVPYLES--------IQDYFVREVSPHVPDAYIDKIFI 621
                     E+ PD+ L + ENVP            I DYF+REV PHV +A+I     
Sbjct: 144 YMATPTGEYIEYEPDSELRDTENVPLALDTSLSASSVIHDYFIREVRPHVDEAWIAI--- 200

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                +   +GYEI+FN++FYQ++P R L+++ AE+  +EA+   LL+++ +
Sbjct: 201 -----DKTVIGYEISFNKYFYQHKPLRSLEEVTAEILALEAETDGLLKQLVS 247


>gi|227891952|ref|ZP_04009757.1| restriction-modification protein [Lactobacillus salivarius ATCC
           11741]
 gi|227866286|gb|EEJ73707.1| restriction-modification protein [Lactobacillus salivarius ATCC
           11741]
          Length = 767

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 84/531 (15%), Positives = 177/531 (33%), Gaps = 105/531 (19%)

Query: 2   TEFTGSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           T    S + L N        L       G  + ++F         L+ +    E     +
Sbjct: 148 TAEIRSKSDLINLFRVANNKLREAGVNAGVTRFSEFSN----LLFLKLVSDLNEERNYNI 203

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
           ++++L       +                       G+        + I   +    +  
Sbjct: 204 KDEFLWDTYKTYE-----------------------GNALINYINNTVIDGLNKKFDSSE 240

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           ED    + +  ++    L +I      +      +   +  + +E+ I+++ ++ +    
Sbjct: 241 EDNGLFTPL-HIKDPIKLKEIVDKLDTLNF--KKIDTDIKGDAFEYFIQKY-NQTNNDLG 296

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           ++ TPR +V     ++           P     +YDP CGTGG L  A   + +      
Sbjct: 297 EYFTPRHIVRFLNDIV----------KPTYGDKIYDPFCGTGGMLIVAFERILNELEERG 346

Query: 236 IPP--------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                           G E+  +T  +    M++         D   NI Q  +    + 
Sbjct: 347 KLDEDTLTNLREQTIWGGEI-SDTARIAKMNMILSG-------DGHSNIMQHDSFMNPV- 397

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +++  +SN PF  +   ++ ++ +                I  G+ + ++H+   L+
Sbjct: 398 -SDKYNIVISNIPFNMEVTNEQSSLYEPD--------------IKKGNAVAILHILKALK 442

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------- 400
              N   RAAI++  + L          ++R+ ++ +  +  IV+LP+ +F         
Sbjct: 443 -NNNPYSRAAIIVPDAVL----NDKSMKDLRKNIVSSGQLLGIVSLPSKVFLPYTEAKTS 497

Query: 401 -------TNIATYLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
                  TNI T    +   K +      RR K+  IN  D + SI  E  +        
Sbjct: 498 ILIFGSKTNIPTENIFVYKVKNDGYTLTTRRRKISGINDLDNFISIHEEMLETNYNKKLN 557

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
              +   Y+SR++    +        Y   ++   +R+S IL++      E
Sbjct: 558 YDNL--FYISRKDILDEKNKSLLLTQYHDEQITGYIRLSDILEQVKEKNTE 606


>gi|319757929|gb|ADV69871.1| putative HsdM [Streptococcus suis JS14]
          Length = 240

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 20/222 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLAN 344
             Y +SNPPF   + + +D VE    + E  RF  G+PKI +          LF+ H+ +
Sbjct: 1   MDYIVSNPPFKLDFSEWRDQVESLPNSSE--RFFAGVPKIPNKKKESMAIYQLFIQHIIH 58

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G+AAIVL +  +        + +IR+ L++  ++  +V++P+++F  T   
Sbjct: 59  SLK----EDGQAAIVLPTGFITAQS--GIDKKIRQHLVDEKMLAGVVSMPSNIFATTGTN 112

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGK 463
             +  +  +     +  V LI+A++L T ++    ++ +++ D+  QI+  ++++E    
Sbjct: 113 VSILFIDKK----NKDDVVLIDASNLGTKVKEGKNQKTVLSPDEESQIIQTFINKEVVED 168

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           FS  + Y     +   +         +D   ++  E +   +
Sbjct: 169 FSVKVSYEEIKDKNYSLSAGQYFDIKIDYVDISPEEFEEKMQ 210


>gi|229827684|ref|ZP_04453753.1| hypothetical protein GCWU000182_03073 [Abiotrophia defectiva ATCC
           49176]
 gi|229788144|gb|EEP24258.1| hypothetical protein GCWU000182_03073 [Abiotrophia defectiva ATCC
           49176]
          Length = 237

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 17/227 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  L G+   +++  V+L    L+ +    +   +A+ E+  
Sbjct: 1   MANKNTAVIGFEKQIWDAACVLRGNMDASEYKSVVLGLIFLKYISDRFKDKYNALVEEGD 60

Query: 61  AFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            F     +   E    V   + ++       T       ++    I   +   K I    
Sbjct: 61  GFEEDIDEYTSEGIFFVPAGAHWSEIAAKAHTPEIGKVIDDAMRAIEKENKRLKDILPKN 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                + +      L  +   F+ I +        ++   YE+ +  F  +  +   +F 
Sbjct: 121 FARPELDK----RRLGDVVDLFTNIRMTKHGSEKDILGRTYEYCLSMFAEQEGKRGGEFF 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           TP  VV     +L                 +YDP CG    +    N
Sbjct: 177 TPSCVVRTLVEILKPFKG-----------RVYDPCCGFRVIIMTEAN 212


>gi|37680386|ref|NP_934995.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199133|dbj|BAC94966.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 638

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 100/519 (19%), Positives = 177/519 (34%), Gaps = 78/519 (15%)

Query: 36  LPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GS 93
           L   LL R    +     +      +F     DL  F K      + T    L+ +    
Sbjct: 28  LALLLLVRYTHEVASNEISKENHIDSFKNLFFDLNDFSKDGLVIDFYTLRDKLNHIVVNC 87

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             + N L   +  FS N     E+        R+    +L  +      ++L      D 
Sbjct: 88  RFSENELSHSV--FSRNNWEKIENI-LDQIPFRIRSTKILDLVIHRLEELDLSEGIEID- 143

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
                ++HL+     +       + +PR ++     +L          +P  + T+YDP 
Sbjct: 144 -----FDHLLLNMVKDSGSS-GAYYSPRPLIKAMVRVL----------NPKPLATVYDPA 187

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GTGG   +A  H       +     L   G +L P  H +    +L+  +      D+S
Sbjct: 188 MGTGGVFVEAKKHAKGKSCFNG----LSFIGNDLSPFAHLIGALNLLLNDI------DIS 237

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                 S L +D    +++ + +S  PFGK           E    E    G        
Sbjct: 238 GVSISDSLLDRDC---QQYDFVISGVPFGKV---------NELTKYEYYYHGY----SGS 281

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              +FL H  +KL      GGRAAIV+    LF   +   E  ++R LL    + A+++L
Sbjct: 282 LEAMFLKHTMDKL----AKGGRAAIVIPDGILFGNASHLDE--LKRQLLTQFNLHAVLSL 335

Query: 394 PTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P   L   + +   +    N  +E+       I   +L T+      K   I D      
Sbjct: 336 PKGTLAPYSGVKVSVLFFDNTVSEKD------IWFYELRTN--KPLSKVNSITDSDFEDF 387

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
             +Y  RE  + S ++   +    +      L +SF      L + EA + + K     Q
Sbjct: 388 TSLYERREVSENSCLISKESLLQDKT-----LNLSF-----SLPKTEAGLKFDK-----Q 432

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                +    +  +        ++  +++      +K+K
Sbjct: 433 EMIASLKSEQLSLVTSIENHFDYMSLNLECKYIHQVKLK 471


>gi|315222592|ref|ZP_07864481.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211]
 gi|315188278|gb|EFU22004.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211]
          Length = 548

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 23/230 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
               ++  L   +++    L G     +F   + P    +R+    +       E     
Sbjct: 310 NEETTSQKLFAHLYEACNILRGPINQDEFKDYVTPILFFKRISDVYDEETQEALE----L 365

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-------F 115
            G + +  +F +   +       +      S +    +   +                 F
Sbjct: 366 SGGDEEFAAFDENHSFVIPEGCHWKDLRNASQDVGKIIVKAMNGIERANPGTLSGVFSSF 425

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +D  ++      ++   L  + ++ S +++        VM + YE+LI++F     + A 
Sbjct: 426 DDVTWTDKTKLTDE--RLKDLIEHMSSLKVGNKNYSADVMGDAYEYLIKKFADLSKKNAG 483

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           ++ TPR +V L   L+           P    T+YDP CG    +    N
Sbjct: 484 EYYTPRTIVKLMVMLM----------DPKPGDTVYDPACGFRVIIMTQAN 523


>gi|218675223|ref|ZP_03524892.1| putative type I restriction enzyme modification methylase subunit
           [Rhizobium etli GR56]
          Length = 364

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 141/409 (34%), Gaps = 68/409 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVIL---PFTLLRRLECALEPTRS---AVREKYL 60
           +A ++   +W+    L        + + +        L+ +      T S    +R   L
Sbjct: 2   NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRETGSLPKTMRWADL 59

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKA 113
                   LE + KV    G +     +  +  L    G+T       +      +  + 
Sbjct: 60  VAENGLRKLEHYRKVLVTLGATSTRLGKDDVLVLPPGDGATPEDKKRYADARPLPEMVQE 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF+     +    + +   L  +      ++   +        ++YE L+++   E   G
Sbjct: 120 IFD-----NASTFIREPQNLTTLVTAIDELDWFSE--ERDQFGDLYEGLLQKNAEETKRG 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--- 230
           A  + TPR ++ L   L+           P     + DP  GTGGFL  A  ++      
Sbjct: 173 AGQYFTPRVLIELLVRLM----------QPQPGEIIQDPAAGTGGFLIAADRYMRARTDN 222

Query: 231 -----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +       HG E  P T  + +  + +  ++SD       ++  G TLS  
Sbjct: 223 YFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD-------HVDLGDTLSDK 275

Query: 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                R +  L+NPPFG       +D +                  +S   + F+ H   
Sbjct: 276 GKGLGRVNLILTNPPFGPAGGAPTRDDLSV-------------TASVSSYQLPFVEHCIR 322

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            L+     GGRAAIV+  + LF    G    E+RR ++    +  I+ L
Sbjct: 323 ALQP----GGRAAIVVPDNVLFEDARG---KELRRMMMNWCDLHTILRL 364


>gi|158521274|ref|YP_001529144.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510100|gb|ABW67067.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 1362

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 108/587 (18%), Positives = 197/587 (33%), Gaps = 83/587 (14%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79
            D   +F   D    I     LR         + A  E   AF G+  +      +   +
Sbjct: 10  NDRLKNFLKADMKLAIATLLYLR-----WADFQEAELEAMAAFEGTEYEPVLPASLHWRT 64

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICK 138
           ++  S   LS +  T         + +F  N  A         +         +L     
Sbjct: 65  WHQLSPEDLSNVL-TRQLPVALDQLKNFRHNPMATHLHRLAAPTRKLGDLPPKILANTVS 123

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +           R + +I      RFG           TP  +      L        
Sbjct: 124 RLAEKPFETPADHRRALKDID----GRFGEA---KDGYHTTPLYLTKFMVELA------- 169

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
              +P    ++YDP  GT   L   ++HV     +       +   G E     + V + 
Sbjct: 170 ---APSKGESIYDPCFGTADLLITTIDHVSGQQENTGYNMESVNISGVEKNISAYIVGMT 226

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +++    SDP+ +L  N  + +  +     G  F   L+ PP+G   +  K+ +E   K
Sbjct: 227 RLVLAG-ASDPKIEL-GNSLERTAPANPQQDG--FDVVLATPPWGAIHKILKEEIELNGK 282

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +   G           LF+ H    L       GRA I +  S LF    G  E  +
Sbjct: 283 YYPVRTRGRAG--------LFIQHALANLRP----DGRAIIAVPQSLLF----GDTEINL 326

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R WL+EN  +EA+++LP ++F    +I + + +L    + +   +++++NA   +   R 
Sbjct: 327 RAWLIENHTVEAVISLPPNVFGALISIPSGILVLRRGGSTK---QIRMVNAEPFFEQGR- 382

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            GK+   I+D Q   ++ +  + E  ++                       + ++   LA
Sbjct: 383 -GKQPTTISDSQIHSLVAMIRNPEQSQYC----------------------WDVEVESLA 419

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
            L  D+T R+     +S  L +L  + +             E +     ++  +K +   
Sbjct: 420 ELGFDLTPRR---RDRSSLLGVLDELNKLRSIPIEPLKECCEILHGCSIRSHDLKDTSPV 476

Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE--SIQD 601
               + A            +  GE  P +     E VPY+    I+ 
Sbjct: 477 SQE-LAALSL----GAIKEESMGEKQPGSLSLTIEPVPYIRIKDIEK 518


>gi|257454706|ref|ZP_05619961.1| type I restriction modification system M subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257447887|gb|EEV22875.1| type I restriction modification system M subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 321

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 106/292 (36%), Gaps = 52/292 (17%)

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIP 237
           +   L+           P    T+ DP CGT GFL  A  ++ D             K  
Sbjct: 1   MMVELM----------QPKPTDTICDPACGTAGFLVAASEYLNDHYQSEIFANADAAKRY 50

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCL 296
                 G + +     +    ML+  +E       + NI+   +LS+       +F   L
Sbjct: 51  NNGTFFGYDFDSTMLRIGSMNMLLHGVE-------NPNIENRDSLSQAHADIADKFSLIL 103

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    + D  A           +      K     +LF+      L++    GGRA
Sbjct: 104 ANPPFAGSLDYDSTA-----------KNLLATVKTKKTELLFIALFLRMLKI----GGRA 148

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A+++    LF   +      +R+ L+E   +EAI+++P+ +F     ++T + I +    
Sbjct: 149 AVIVPDGVLF--GSSIAHKTLRQELVEKQQLEAIISMPSGVFKPYAGVSTAIVIFTK--- 203

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR----QILDIYVSRENGK 463
               G    +   D+     +   KR  + D   +     I+  +   EN +
Sbjct: 204 -TMSGGTDKVWFYDMQADGYSLDDKRTPLGDSHEQNNIPHIIARFHHLENEE 254


>gi|282882715|ref|ZP_06291322.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis
           315-B]
 gi|281297376|gb|EFA89865.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis
           315-B]
          Length = 269

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 34/249 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
             +   + L   IW  A+D+ G     DF + +L     R +   +    +    +    
Sbjct: 4   NESIQRSELYRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENIREYFNHAEHEAGDL 63

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
                 ++   +N D           F   S+   + + +  T  NL + +A+       
Sbjct: 64  EFDYGKISDQEANEDFRPGTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKEIEA 123

Query: 108 -------SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
                   D+ K +F+D D +S+       EK   L  I +    I        D     
Sbjct: 124 SAVGFASEDDIKGLFDDIDMTSSRLGGSVSEKNKRLADIIEGIGQINFKDFRNNDIDTFG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + Y +LI ++ +   +   +F TP+ V  L   L++D  + + K        +YDPTCG 
Sbjct: 184 DAYLYLISKYATNAGKSGGEFFTPQTVSKLLARLVMDGKNKINK--------VYDPTCGF 235

Query: 217 GGFLTDAMN 225
              +    N
Sbjct: 236 RVIIMTQAN 244


>gi|166368339|ref|YP_001660612.1| Type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
 gi|166090712|dbj|BAG05420.1| Type I restriction enzyme EcoEI M protein homolog [Microcystis
           aeruginosa NIES-843]
          Length = 677

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 131/390 (33%), Gaps = 54/390 (13%)

Query: 44  LECALEPTRSAVREKYLAFGGS------------NIDLESFVKVAGYSFYNTSEYSLSTL 91
           L    E   + +                        D +S  +   +    +   ++   
Sbjct: 30  LSAVFEECHNYIYANEGMLKDKIFHEMVKLIIIKLHDEKSAKQSVNFGVTASEYKAIVAN 89

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S    + L     S  ++ +  F D  F        K   L  I      I L      
Sbjct: 90  KSDEFMSRLSQLFTSIKNHYRGFFTDDTFK------LKPLTLAYIVGRLQYINLT--KTS 141

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +    ++  + R          +F TP  +V LA  ++           P     + D
Sbjct: 142 GDIKGEAFQTFVNR---HQRGDRGEFFTPHPIVRLAVEMI----------DPKPNEKIID 188

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P CG+GGFL  A+NHV        I   +     G E  P+   V ++GM+    E    
Sbjct: 189 PACGSGGFLIQAINHVRQNNPEFDIASFVQESITGIEFNPD---VALSGMIRLVFEGGTG 245

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFG 325
            ++       + L +D      F   L+NPPFG K + +   + K +    K  +    G
Sbjct: 246 SEIICT----NALIEDEKLNNSFDVILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNG 301

Query: 326 PGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             +      G    ++ +   ++L    GGR AI+L    L N   G     IR WL   
Sbjct: 302 WEVSPTVLAGQSPDILFIEKSIKLL-RAGGRMAIILPDGLLQNISNGP----IRHWLRSQ 356

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSN 412
             I  +V++P + F  + T I T L ++  
Sbjct: 357 TKILGVVSIPPEAFVPYGTGIKTSLLVVQK 386


>gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
 gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
          Length = 842

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/495 (17%), Positives = 175/495 (35%), Gaps = 80/495 (16%)

Query: 1   MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M+    S     N    IWK  + + G    +D+  +      +R +       ++  R 
Sbjct: 1   MSTNNSSHRDARNQARDIWKLIDYIRGASSISDYRSLAYSLLFIRYM-----QAKTGERF 55

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115
           +Y  F  S  D+ +F+        ++  +     G    +    L  + +    N +   
Sbjct: 56  EYSNFYSSE-DISNFIDNLVQRCIDSEMFHHDVAGFLREHISYVLLKHGSINEPNVRLAL 114

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            D +F ++     +A L                                 F    S+   
Sbjct: 115 SD-NFKNSSRSFVEATLSELDI---------------------------LFAENESKSGG 146

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+DV  L T L           +     ++ DP  G G     A +  +  G++  
Sbjct: 147 EFYTPQDVNWLVTRL----------GAEYEPDSVCDPFAGAGS---TAFSFDSALGTYFN 193

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I        QE+  + H         + + S   +D+      G +LS   +  +++   
Sbjct: 194 IDT------QEVNRDAH--------FQIVVSRIVKDVYGKDYLGDSLSTPYYQSQQYDLV 239

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            S PPFG K  K       E +          LP+      + L      +    N  G+
Sbjct: 240 ASFPPFGMKIPKSNRRQILERRGNYWLEQAYNLPESRSDWFVTL-----SMLPALNKKGK 294

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
               +S + +    A   E++IR +L+    IE ++ LP +++  T+I++ L +L+N+  
Sbjct: 295 LITGMSLASMTRSGA---ETKIRSFLVAQGNIEKVILLPKNIYHSTSISSVLLVLNNKSD 351

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            E+R  +Q ++A+  +   R     R  ++ D   +I+   +S  +G+FS+ +       
Sbjct: 352 GEKRRDIQFVDASLFYQPARG----RNTLSFDNIEKIVASCLS--DGRFSKTISSEDVAN 405

Query: 476 RRIKVLRPLRMSFIL 490
               +   L +   +
Sbjct: 406 NNFNLNPSLYVEKTI 420


>gi|94995074|ref|YP_603172.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548582|gb|ABF38628.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 263

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNL------- 100
                       A+    +  +    V G   Y      +   L      N         
Sbjct: 58  NTFTEAQKIFEDAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 101 -ESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I    ++ + +FED D  S        ++   +  + K  + I+   + V    + 
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSKKLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDTLG 175

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  G 
Sbjct: 176 DAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAMGF 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV 241
              +    N   +  S   +P    
Sbjct: 230 RVIIVIEANSYVNIRSSRLLPKFKT 254


>gi|67920717|ref|ZP_00514236.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
 gi|67856834|gb|EAM52074.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
          Length = 333

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 133/337 (39%), Gaps = 44/337 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNT 96
              L+  +   E       + Y++     +    +     G +     ++  S L  +  
Sbjct: 33  MLFLKIFDDR-EMEAELFEDDYISAMPEGLRWRDWAANDEGMTGETLLDFVNSKLFKSLK 91

Query: 97  RNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             +L +     S   K  FED F+F      ++   L+ ++    + I+ + ++    + 
Sbjct: 92  NLDLSTSNNPKSRILKEAFEDGFNF------MKNGTLIRQVINKINEIDFN-NSQDKHLF 144

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             IYE +++   +  +  A ++ TPR V      ++           P +   + DP CG
Sbjct: 145 GEIYEKILKDLQNAGN--AGEYYTPRAVTQFMVNMI----------KPQLGERILDPACG 192

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT A+NH+       +    L     G E +P  H +C+  +L+  +++   R  +
Sbjct: 193 TGGFLTCALNHLRKQVKTVEEREKLSHLIMGVEKKPLPHLLCITNLLLHEIDAPKVRRDN 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                     ++     +    L+NPPFG K   ++D +E            P   +  +
Sbjct: 253 TLAN----PLRNYQPSDKVEVILTNPPFGGK---EEDGIEG---------GFPKAYQTKE 296

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            + LFL+ + + LE+    GGR  IVL    +  GR+
Sbjct: 297 TADLFLVLIIHLLEV----GGRGGIVLPDGNIIWGRS 329


>gi|167760902|ref|ZP_02433029.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704]
 gi|167661505|gb|EDS05635.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704]
          Length = 304

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 111/285 (38%), Gaps = 38/285 (13%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGM 259
           +P +   + D  CGTGGFL  A+ H+     +      L     G E +P  H +C   +
Sbjct: 6   NPQLGEQVLDFACGTGGFLVCALEHLRKQVRNIDDEAQLQNSILGVEKKPLPHMLCTTNL 65

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           ++  +++   R  +          K++    +    L+NPPFG     ++D +E      
Sbjct: 66  ILHNIDNPQIRHDNSLG----YPIKNIKPKDKVDIILTNPPFGG---IEEDGIEDNF--- 115

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                 P   K  + + LFL+ +  KL+      GRAAIVL    LF       ++ I+ 
Sbjct: 116 ------PANYKTKETADLFLVLMMYKLKQ----TGRAAIVLPDGFLF---GEGVKTAIKE 162

Query: 380 WLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRN 436
            LL    +  IV LP  +F   T I T L  L        RG  Q I   +  L    +N
Sbjct: 163 KLLNEFNLHTIVRLPNGVFSPYTGINTNLLFL-------ERGTTQEIWFYEHQLPEGYKN 215

Query: 437 EGKKRRIINDD-QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
             K + I  D+ +  +    + +R+    +  +       R   +
Sbjct: 216 YTKTKPIKLDEFEVEK--AWWNARKETDCAWRVSIDEIKARGYNL 258


>gi|257795446|ref|ZP_05644425.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
 gi|257789418|gb|EEV27758.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
          Length = 199

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 19/197 (9%)

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIE 388
             S     F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +E
Sbjct: 9   PKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLE 61

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q
Sbjct: 62  AVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQ 115

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADIT 503
             +I+D Y  +E   K+S     +        +  P  +    ++  +     + +    
Sbjct: 116 VERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNI 175

Query: 504 WRKLSPLHQSFWLDILK 520
            ++++ + Q     + +
Sbjct: 176 DKEIAEIEQEINAYLKE 192


>gi|42794862|gb|AAS45789.1| SLV.6 [Streptomyces lavendulae]
          Length = 814

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 119/307 (38%), Gaps = 32/307 (10%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +++  N ++  I  +       + +F TP+ VV L  +L       +         T+YD
Sbjct: 240 NQLGGNAFQLFIDAYEKHARLRSREFFTPQGVVRLMASLARTSLGRVPH-------TVYD 292

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P    G FL +++   A           +   G+  +P+   +         +    R  
Sbjct: 293 PYVRGGEFLAESVTDSASILRSDPELAPVTVFGETTDPDPALLAGL----NLVLLGVRPR 348

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           +    +      +D          L+NP F  K    +   E        G +  G P +
Sbjct: 349 VRLVHKAPWAEIRDG-EAPAADLVLTNPRFNMKDSAGEACRE--------GTWAYGAPPV 399

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + ++ ++ H    L      GGRAA+V+ +       A + E+ IRR +++  ++E ++
Sbjct: 400 DNDNLAYVQHALASLRA----GGRAALVMPTKA--GNSASAAETAIRRAMVQAGVVECVI 453

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           A+P  LF  T +   +W+L  R  ++   +V  ++A  L          R ++ +D  + 
Sbjct: 454 AMPAKLFSGTAVPVSVWLL--RHPDDPCERVLFLDARHLGVR----QGPRCVLKEDDVQA 507

Query: 452 ILDIYVS 458
           +L  Y +
Sbjct: 508 VLGTYEA 514


>gi|300956332|ref|ZP_07168630.1| N-6 DNA Methylase [Escherichia coli MS 175-1]
 gi|300316844|gb|EFJ66628.1| N-6 DNA Methylase [Escherichia coli MS 175-1]
          Length = 154

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 23/163 (14%)

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLS 297
            GQE    T ++    M +   +       +  I+ G T+       K      F    +
Sbjct: 2   FGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDKNGDLMLFDIVTA 54

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF             E +N + GRF  G+P  + G   F+ H+   L+    G GR  
Sbjct: 55  NPPFSLDKWGH-----DEAENDKFGRFRRGVPPKTKGDYAFISHMIETLK---PGTGRMG 106

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           +V+    LF G +   E +IR+ L++ +L++A++ LP  LF+ 
Sbjct: 107 VVVPHGVLFRGSS---EGKIRQKLIDENLLDAVIGLPEKLFYG 146


>gi|15668302|ref|NP_247097.1| type I restriction-modification enzyme 2 subunit M
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2495819|sp|Q57596|Y132_METJA RecName: Full=Uncharacterized protein MJ0132
 gi|1592267|gb|AAB98113.1| type I restriction-modification enzyme 2, M subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 220

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P        ++  +            +  IVL S  LF    G  E +IR+ ++E DL
Sbjct: 26  GYPPKQSADWAWVQLMLYF------ARKKVGIVLDSGALFR---GGKEKKIRKEIVEKDL 76

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           IEAI+ LP  LF+       + IL+  K EER+GK+  INA+  +     E ++   + +
Sbjct: 77  IEAIILLPEKLFYNVTAPGIVMILNKNKPEERKGKILFINASLEFEK-HPEVRRLNRLGE 135

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           +   +I+D+Y + E+   FSR++D          +   L +  + +K  + 
Sbjct: 136 ENIDKIVDVYENWEDIEGFSRVVDLEEIRKNDYNLNVSLYVFPVEEKEDID 186


>gi|159026847|emb|CAO89098.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 677

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 126/357 (35%), Gaps = 46/357 (12%)

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D +S  +   +    +   ++    S      L     S  ++ +  F D  F      
Sbjct: 65  HDEKSAKQSVNFGVTASEYKAIVANKSDEFMLRLSQLFTSIKNHYRGFFTDETFK----- 119

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             K   L  I      I L        +    ++  + R          +F TP  +V L
Sbjct: 120 -LKPLTLAYIVGRLQYINLT--KTSGDIKGEAFQTFVNR---HQRGDRGEFFTPHPIVRL 173

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHG 244
           A  ++           P     + DP CG+GGFL  A+NHV        I   +     G
Sbjct: 174 AVEMI----------DPKPNEKIIDPACGSGGFLIQAINHVRQNNPEFNIATFVQESITG 223

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            E  P+   V ++GM+    E     ++       + L +D      F   L+NPPFG K
Sbjct: 224 IEFNPD---VALSGMIRLVFEGGTGSEIICT----NALIEDEKLNNSFDVILTNPPFGNK 276

Query: 305 WEKDKDAV-------EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            + +   +        K HK+          P I  G    ++ +   ++L    GGR A
Sbjct: 277 GKVEDQKILQSYLLARKWHKSASNS--WEASPTILAGQSPDILFIEKSIKLL-RAGGRMA 333

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
           IVL    L N   G     IR WL     I  +V++P + F  + T I T L ++  
Sbjct: 334 IVLPDGLLQNISNGP----IRHWLRSQTKILGVVSIPPEAFVPYGTGIKTSLLVVQK 386


>gi|237654635|ref|YP_002890949.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625882|gb|ACR02572.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 356

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 72/261 (27%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L+  IW  A+ L GDFK +++G+VILPFT+LRRL+C L PT++AV  ++       
Sbjct: 2   NQQALSALIWSVADLLRGDFKQSEYGRVILPFTVLRRLDCVLAPTKAAVLVEHRDK---- 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                  + AG  +    +++                      + +           +  
Sbjct: 58  -------EQAGLLYLVVEKFAH------------------IEPHPRR----------VDN 82

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +    +  ++ + F+ I                           +E A +  TPR+++ L
Sbjct: 83  VHMGLVFEELIRKFAEI--------------------------SNETAGEHFTPRELIRL 116

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGG--FLTDAMNHVADCGSHHKIPPILVPHG 244
             + L   DD    + PG++RT+YDPT GTG    L+ A  H+ +     K    L   G
Sbjct: 117 MVSPLFIEDDEALSK-PGIVRTIYDPTAGTGTGRMLSVAGEHLHEI----KPGARLTMFG 171

Query: 245 QELEPETHAVCVAGMLIRRLE 265
           QEL PE++A+C A MLI+  +
Sbjct: 172 QELNPESYAICKADMLIKGQD 192



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 8/87 (9%)

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + ENVP  E +Q +F REV  H PDA+ID         +  R+GYEI  NR FY ++P
Sbjct: 278 LRDAENVPLFEDVQAWFEREVLSHAPDAWIDH--------DKTRIGYEIPLNRHFYVFEP 329

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            R L +IDA+LK    +I  ++E +A 
Sbjct: 330 PRPLAEIDADLKRSMDRIKQMIEGLAG 356


>gi|313673365|ref|YP_004051476.1| restriction modification system DNA specificity domain
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940121|gb|ADR19313.1| restriction modification system DNA specificity domain
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 865

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 149/436 (34%), Gaps = 75/436 (17%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-----LGSTNTRNNLESYIA--SFSDNA 111
           Y      + +        G+      +YS S+     LG     N     I   S + N 
Sbjct: 37  YKFMDDMDRESVEMGGKRGFFIGEYEKYSWSSIFNPYLGGHEMLNLYAEAITRMSQNPNL 96

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             +F +  F +          L    K  +             + + +E+L+   GS+  
Sbjct: 97  PELFRNI-FKNAYLPYRDPETLKLFLKTINEFTYDHSE----RLGDAFEYLLLVLGSQG- 150

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TPR ++     L+           P     + DP CGT GFL  A  ++    
Sbjct: 151 -DAGQFRTPRHIIDFMVELV----------GPKKNDLILDPACGTAGFLISAYKYIVREN 199

Query: 232 SHHKIPP------------------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           +  K                     +    G ++ P+   + +  M +          + 
Sbjct: 200 TSEKYRSSNGNGIGDLLTPEERKKLLTNFKGYDISPDMVRISLVNMYLHGF-------VD 252

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I +  TL+ +    +     L+NPPF       K  ++   +            + + 
Sbjct: 253 PKIFEYDTLTSEDRWNEYADVILANPPF----MTPKGGIKPHKRFS---------VQSNR 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+ ++A  L       GRAA+++    +F  ++ +   ++R+ L+E   + A+V+L
Sbjct: 300 SEVLFVDYIAEHL----TPNGRAAVIVPEGIIF--QSANAYKQLRKMLVEK-YLYAVVSL 352

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLI----NATDLWTSIRNEGKKRRIINDDQ 448
           P  +F   + + T + ++    + ++   +  I    +  DL    R   K         
Sbjct: 353 PAGVFQPYSGVKTSILLMDKALS-KKTDSILFIKIENDGFDLGAQRRPIDKNDLPDALQV 411

Query: 449 RRQILDIYVSRENGKF 464
            R+ +D   + +  +F
Sbjct: 412 IREYIDKVRNGKADEF 427


>gi|257794185|ref|ZP_05643164.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
 gi|257788157|gb|EEV26497.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
          Length = 199

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 87/197 (44%), Gaps = 19/197 (9%)

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIE 388
             S     F+ H+ + L    +  G  A+VL    LF G A   E  IRR+L+E  + +E
Sbjct: 9   PKSKADFAFIQHMVHYL----DDEGTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLE 61

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +   +N    +  ++D Q
Sbjct: 62  AVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQ 115

Query: 449 RRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADIT 503
             +I+D Y  +    K+S     +        +  P  +    ++  +     + +    
Sbjct: 116 VERIIDTYKRKATIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNI 175

Query: 504 WRKLSPLHQSFWLDILK 520
            ++++ + Q     + +
Sbjct: 176 DKEIAEIEQEINAYLKE 192


>gi|319948098|ref|ZP_08022263.1| putative type I restriction system adenine methylase [Dietzia
           cinnamea P4]
 gi|319438232|gb|EFV93187.1| putative type I restriction system adenine methylase [Dietzia
           cinnamea P4]
          Length = 649

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 104/301 (34%), Gaps = 50/301 (16%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           +V +  ++++ +  + R            D +  R   HL  ++  +             
Sbjct: 138 SVDESELASVVDFTLERTARTEGRKGAWSDIIGSRT-SHLLASVAANH----------PG 186

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG    L        +     +    +   G ++     A+      + R+  
Sbjct: 187 GVVYDPACGFASALI-------ELADTSQFDDYI---GHDINDRALAIAEVRAALHRV-- 234

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    + +   L  D     R    ++ PPF  + + D    +          F  
Sbjct: 235 ------PLQLAEADILRTDPDPELRADVVIAEPPFAMRMDVDSRLTDPRF-------FNF 281

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P  ++    +L H    L       GRA I+    PLF    G  E  IR  +L    
Sbjct: 282 GAPPPNNADTAWLQHAIAHL----TDTGRAFIITPHGPLFR---GGVEGRIRAEILRQGC 334

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E IV LP  +   T+I   LW+L  R+   +R  V  I+++D+      E    R ++D
Sbjct: 335 VETIVGLPGGMAAYTSIPLALWVL--RRPNNKRSDVLFIDSSDV---DDAEKHVARWLSD 389

Query: 447 D 447
           D
Sbjct: 390 D 390


>gi|205825379|dbj|BAG71470.1| Type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
 gi|329734476|gb|EGG70788.1| hypothetical protein SEVCU028_0605 [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 83/251 (33%), Gaps = 17/251 (6%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
               +W+ A+ L G    +++  V L   +L+ +  + E     +     A      +  
Sbjct: 6   FEEKLWQAADKLRGSMDASEYKNVALGIIILKYVSDSFEEKYEKLLNDEYADEEDKDEYL 65

Query: 70  -ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            E+   V   S +     +          +   + I   +++ K +         + +  
Sbjct: 66  AENIFWVPKESRWQYINDNSKKPEIGQIIDKAMTAIEKENESLKGVLHKDYARPELDK-- 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I   F+      ++    V+  +Y++ I +F S   + A +F TP  +V L  
Sbjct: 124 --EKLGDIIDLFTFKVGDSESKKQDVLGRVYKYFIAKFASAEGKNAGEFYTPASIVKLHV 181

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++   +             +YDP  G+GG    +   V      +  PP L     E  
Sbjct: 182 EMIEPYES-----------RIYDPCYGSGGMFVQSERFVERHQRRYGYPPDLQKMAVEQV 230

Query: 249 PETHAVCVAGM 259
            E   +    +
Sbjct: 231 VEQAELMAGNL 241


>gi|197106985|ref|YP_002132362.1| type I restriction-modification system methyltransferase subunit
           [Phenylobacterium zucineum HLK1]
 gi|196480405|gb|ACG79933.1| type I restriction-modification system methyltransferase subunit
           [Phenylobacterium zucineum HLK1]
          Length = 825

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 133/384 (34%), Gaps = 66/384 (17%)

Query: 95  NTRNNLESYIASFSDNAKAIF---EDFDFSSTIARLEKAGLLYKICKNFSGI----ELHP 147
           + R + +  +   +   +  F        +++I        L +  +  + I     +  
Sbjct: 216 DLRRDKQWILKDINAACREAFVKAGKAGLANSIRVDAANEKLAERARRIATILERLNVTV 275

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            T     +  +YE   R            + TPR +  +   L     D +         
Sbjct: 276 LTAEHDYLGQLYETFFRY---TGGNTIGQYFTPRHIARMMADLCGVGKDDV--------- 323

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRR 263
            + DP CGTGGFL   M+ +    +  ++  +       +G E EP T A+CVA M++R 
Sbjct: 324 -ILDPACGTGGFLIACMDRILHQHTISRVQMVKVVAKQLNGFESEPVTAALCVANMILRG 382

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                  D S  I Q   L+   F        L+NPPF  K                   
Sbjct: 383 -------DGSTGIHQADALTSPEFPAGLATVALTNPPFPHK------------------- 416

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 K    +  F+      L+     GGR A++L +S L     G      R  +L+
Sbjct: 417 ------KTDTPAEAFVDRALEGLQT----GGRLAVILPTSTLVKQDKGG----WRAQILK 462

Query: 384 NDLIEAIVALPTDLFFRTNIATY-LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           ++ +  +  LP +LF     AT  + +L   +  + + K   +        +R   +  R
Sbjct: 463 HNSLLGVCQLPDELFQPFAAATTSVVLLEKGRPHDPKRKTAFVRLHHDGFVLRKGARIER 522

Query: 443 IINDDQRRQILDIYVSR-ENGKFS 465
               ++    ++  +++ E   FS
Sbjct: 523 ASEPNEIPAAVEALLNKTEQPGFS 546


>gi|302543740|ref|ZP_07296082.1| N-6 DNA methylase superfamily protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461358|gb|EFL24451.1| N-6 DNA methylase superfamily protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 393

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 116/310 (37%), Gaps = 43/310 (13%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +R   ++ ++G+  F TP D+  L                P     + DP CG+GG L 
Sbjct: 32  CLRELSADQADGSHYF-TPDDMARLMV----------GAAVPRDGHRVLDPVCGSGGLLV 80

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++  +V +      + P +   G+E    T  V      +R + +            G +
Sbjct: 81  ESHRYVRE---RVGLNPAMSLQGKEQHAHTWQVARMNFAVRGITA-------HVFPPGDS 130

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-----HKNGELGRFGPGLPKISDGSM 336
           L++     +R    L+N PF ++    +D  E+             R+    P     + 
Sbjct: 131 LAEP--EPERHDIVLANLPFNQRDWAPEDKEEQAAGRSAPPLPVDPRWPEEPPSRGSANS 188

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H+A+ L       GR   ++  S   + +  +        LL  DL+E ++ALP  
Sbjct: 189 AWIQHIAHALAPA----GRGVFLMGDSVANSRQPVTRRLR--ERLLREDLVECVIALPLR 242

Query: 397 LFFRTNIATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +F  +  +  LW+L+  K+        +RR +V  +NA   +  +       R + D   
Sbjct: 243 VFGHSKASACLWVLNRDKSARPGWGVLDRRQQVLFVNARRAFEPVPKSRA--RRLGDKNT 300

Query: 450 RQILDIYVSR 459
             IL    + 
Sbjct: 301 ALILTTLAAW 310


>gi|126665393|ref|ZP_01736375.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
 gi|126630021|gb|EBA00637.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
          Length = 214

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 26/233 (11%)

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            KW    D            RF P   L   S     F++H  + L    +  GRAAIV 
Sbjct: 1   MKWIGSDDPTLINDD-----RFAPAGVLAPKSKADFAFVLHALSYL----SSKGRAAIVC 51

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
                + G A   E +IR++L++N+ +E +++L  +LFF T IA  + +LS  K +    
Sbjct: 52  FPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFFGTTIAVTILVLSKHKIDTT-- 106

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF---SRMLDYRTFGYRR 477
             Q I+A+ L+    N       + D    QI+ ++ S+ N +    S   +        
Sbjct: 107 -TQFIDASGLFKKDTNT----NTLTDAHIEQIMQVFDSKANAEHLAQSIPFETIAANDYN 161

Query: 478 IKVLRPLRMSFILDKTGLARLEAD--ITWRKLSPLHQSFWLDILKPMMQQIYP 528
           + V   +      + T +  L A+  IT  K+  L +     + +   +++  
Sbjct: 162 LSVSSYVEAKDNREVTDITTLNAELKITVTKIDQLRKDIDGIVAEIESEEVKA 214


>gi|289423038|ref|ZP_06424856.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156549|gb|EFD05196.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius
           653-L]
          Length = 270

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 84/252 (33%), Gaps = 41/252 (16%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +       L   IW  A++L G     DF   IL     R +    E   + + E  +  
Sbjct: 6   KKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYIS---ENITNYINEGEIEA 62

Query: 63  GGSNIDL------------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--- 107
           G S+ D             E  V+  G+ F   SE   +         NL   +      
Sbjct: 63  GNSDFDFAKISDEMAKEAREGLVEEKGF-FILPSELFCNVRAKAKDNENLNETLEKVFRH 121

Query: 108 ----------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRV-- 154
                       +   +F+DFD +S       A    K+CK   G+ +++   V D    
Sbjct: 122 IEESAKGSESESDFAGLFDDFDVNSNKLGSTVAKRNEKLCKLLDGVADMNLGNVKDHDID 181

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   +F TP DV  L T L               I  +YDP 
Sbjct: 182 AFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRL--------GTVGKTEINKVYDPA 233

Query: 214 CGTGGFLTDAMN 225
           CG    +    N
Sbjct: 234 CGFRVIIMTQAN 245


>gi|307290562|ref|ZP_07570473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498383|gb|EFM67889.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 194

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 15/184 (8%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 1   LHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 53

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R
Sbjct: 54  GTSIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAER 106

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 107 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 166

Query: 519 LKPM 522
           L+ +
Sbjct: 167 LEAI 170


>gi|307290732|ref|ZP_07570633.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498212|gb|EFM67728.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 193

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 15/184 (8%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 1   LHGFYHLK----ETGTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 53

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +   +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R
Sbjct: 54  GTSIPTTVIVLKKNR---QTRDVLFIDASREFVKGKN----QNKLSEENIQKILETYAER 106

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++  K++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 107 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 166

Query: 519 LKPM 522
           L+ +
Sbjct: 167 LEAI 170


>gi|116754514|ref|YP_843632.1| type I restriction-modification system specificity subunit
           [Methanosaeta thermophila PT]
 gi|116665965|gb|ABK14992.1| type I restriction-modification system specificity subunit
           [Methanosaeta thermophila PT]
          Length = 196

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 21/195 (10%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             G    + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV +   + 
Sbjct: 2   ENGQITWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLDMKASL 61

Query: 63  GGSN--IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             +       +  + AG +FYNTS ++L  L +  +R     +  +Y+  FS N + I +
Sbjct: 62  DKAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIID 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV------------PDRVMSNIYEHL 162
           +F+F + I RL KA  L  + + F    I L P  V             +  M  I+E L
Sbjct: 122 NFEFRNQIPRLAKADALGTLIEKFLDPSINLSPYPVLNSDGSVRLPGLDNHAMGTIFEEL 181

Query: 163 IRRFGSEVSEGAEDF 177
           +RRF  E ++   + 
Sbjct: 182 VRRFNEENNKEVGEH 196


>gi|281418675|ref|ZP_06249694.1| N-6 DNA methylase [Clostridium thermocellum JW20]
 gi|281407759|gb|EFB38018.1| N-6 DNA methylase [Clostridium thermocellum JW20]
          Length = 410

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/444 (18%), Positives = 146/444 (32%), Gaps = 93/444 (20%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +         L + +W  A     D  K T++ +    F  L+  +      R   RE
Sbjct: 1   MAQNNNKVDFHRLGSELWDIANIFRDDTLKTTEYLEEFSYFLFLKLFDE-----REKQRE 55

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           +     G+    +         F   +E  L++ G T   +N E  I  +  N  +   +
Sbjct: 56  ELARLDGTKFVPD---LPNHLRFSTWAEKILASDGKTVKTDNGEFTIVDYVRNIFSELAE 112

Query: 118 FD-------------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                          F + I R+  +  + ++ K    +EL  +     VM   YE +++
Sbjct: 113 VKDHDGRDLSLFRRLFKNHIWRIRYSPTIKELIKRLKDLELEQNF---DVMGRAYEFVVQ 169

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           + G +  +    + TPR ++H    L            P +   +YDP  GTGGF+  A 
Sbjct: 170 KLGEQ--KQYGQYFTPRHIIHFMVELA----------DPEIGEKIYDPAAGTGGFILRAF 217

Query: 225 NHVADCGSH--------------------------HKIPPILVPHGQELEPETHAVCVAG 258
             V     +                          ++       +  E  P+ + + +  
Sbjct: 218 EVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKLKEESLYAVEKAPDVYKLALMN 277

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           M++         D   N+ +  +L     L   +++   L+NPP+G              
Sbjct: 278 MILHN-------DGKSNLFEADSLDNRAQLEHKEKYDVVLTNPPYGP------------- 317

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGE 374
                 R G           LF+ H+   L    P     RA +++    LF     S  
Sbjct: 318 --LAQSRVGTFEFHAKRYEALFIQHIMAALRPSEPAKKHSRAVVIILDKILF--DNSSVF 373

Query: 375 SEIRRWLLENDLIEAIVALPTDLF 398
             IR  LL    ++A+ ++P   F
Sbjct: 374 KNIRMKLLREFDLKAVFSMPGRHF 397


>gi|319938833|ref|ZP_08013197.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
 gi|319811883|gb|EFW08149.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
          Length = 226

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 27/232 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 1   MAKKSNANIGFEKELWNAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD- 119
              G   + +         F+         + S        S I +  D A    ED + 
Sbjct: 59  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAH----SSEIGTVLDEAMREIEDDNP 111

Query: 120 -FSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
              + + ++         +L ++   F+ I +   +    ++   YE+ I +F +   + 
Sbjct: 112 SLDNVLPQIYASPDLDKRVLGEVVDIFTNINMFEGSEEKDLLGRAYEYCIEQFAAHEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             +F TP  +V     +L                 +YDP CG    +    N
Sbjct: 172 GGEFYTPTSIVKTIVEILKPFRG-----------RVYDPACGFRVIIMTQAN 212


>gi|291004531|ref|ZP_06562504.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 682

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 148/445 (33%), Gaps = 63/445 (14%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           V + A  + TP+ V  L   L  D  +            ++DP CGTGG L+ A+   A+
Sbjct: 154 VPDTAGAYATPQPVAELMANLASDYPEC-----------VFDPACGTGGLLSAAVGRGAN 202

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +GQ+       +         +        +  +  G +L  D F  
Sbjct: 203 R-----------LYGQDAIDVQATLT-------DVRLKVEAVANAAVAFGDSLRADAFPD 244

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R    L NPPFG +     D            R+  GLP  S+  + ++ H    L   
Sbjct: 245 TRVDTVLCNPPFGVRDWGHDDLAYD-------PRWVYGLPPRSESELAWVQHCLAHL--- 294

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GG A +++                +R  L+    + A++ LP       +++ ++W+
Sbjct: 295 -EPGGLAVVLMPPGAAERPSG----RRVRAELIRQGALRAVIGLPPGAAPPLHLSLHIWV 349

Query: 410 LSNRKTEERRGK-VQLINAT----------DLWTSIRNEGKKRRIIND-DQRRQILDIYV 457
           L+        GK V  ++A+          +LW        +   + D  QR  I+D+  
Sbjct: 350 LTCPDEALATGKSVLFVDASSGSVSDQRIVELWRDFDEAEDRFEAVPDVAQRLSIVDLLD 409

Query: 458 SRENGKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           +  +   +R +  RT      + ++   LR         LA+L +  T     P      
Sbjct: 410 ATVDVTPARRVHIRTAISPNEQAELAEELRKRLGRACDELAQLASTPTIDSKQPSDTPMT 469

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                  + +  P  W  + V + ++       +   +              D     ++
Sbjct: 470 TV---WSVSEGEPMTWRTATVADLLRGGALALHRATPTHRTGSTRNADVASNDVAILTLS 526

Query: 576 DVNGEWIPDTNLTE--YENVPYLES 598
           D+ GE  P  +L +   E +     
Sbjct: 527 DLRGEPRPSGSLRDKPVEPIRIERG 551


>gi|163785377|ref|ZP_02180005.1| type I restriction-modification system specificity subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879355|gb|EDP73231.1| type I restriction-modification system specificity subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 217

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 37/226 (16%)

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             FGY +I V RPLR+  +L    L   E  I  +K         L++LK + + +    
Sbjct: 1   EAFGYYKITVERPLRLKVVLSDENLKSFEEAIKSKKKKKEADYRLLEVLKDISKDLTD-- 58

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD-------------- 576
             E     +      +   +K +             KD  A PV                
Sbjct: 59  --EYIYDFNKFLRLIEKKGIKINSENKKLIQKYLTEKDENAKPVIKEIYKNKEADRLYGF 116

Query: 577 ---------VNGEWIPDTNLTEYENVPY--LESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
                    V  E+ PDT+L   ENVP      I+ +F REV P+V DA+I+K  I    
Sbjct: 117 FEIDIDGKKVVVEYEPDTDLRNTENVPLLEEGGIEGFFEREVLPYVTDAWINKDNI---- 172

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
               ++GYEI+F ++FY+ +  R+L +I  +LK ++ +   LL+E+
Sbjct: 173 ----KIGYEISFTKYFYKPEKLRELDEIVLDLKNLQEETEGLLDEI 214


>gi|293363461|ref|ZP_06610218.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
 gi|292552981|gb|EFF41734.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
          Length = 229

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 19/200 (9%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F   +SNPP+  KWE   + +    +   +    P     S   M F+MH+ N L   
Sbjct: 6   KPFDIIVSNPPYSTKWEGKNNPLNANDERFSVTTLAPN----SKADMAFVMHMINHL--- 58

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G AAIV     L+   A   E +IR +L++ +LI+ IV LP +LFF T+I T + +
Sbjct: 59  -SSSGSAAIVEFPGVLYRCGA---EKDIREYLVKENLIDTIVKLPNNLFFGTSIYTCILL 114

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKFSRML 468
           L   K E+    +  ++A+  +        K+  ++     +I++I    +E   FS ++
Sbjct: 115 LRKNKNEQG---IFFVDASKEFIK----NGKKNKLSKQNLEKIIEIIRYKKEIEDFSILI 167

Query: 469 DYRTFGYRRIKVLRPLRMSF 488
           D+ T   +  K+     ++F
Sbjct: 168 DHETIANKNFKLSVNSYLNF 187


>gi|57790490|gb|AAW56185.1| Cj81-126 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 149

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 89/145 (61%), Gaps = 5/145 (3%)

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + S LFN    SG   IR+ ++END +EAIVALPT++F+ T I T++WI++N+K E +
Sbjct: 2   VHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKPEHK 59

Query: 419 RGKVQLINATDL--WTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +GKVQLINAT+   ++ ++   G K+  +  +   +I  +++   + K  ++LD   FGY
Sbjct: 60  KGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGY 119

Query: 476 RRIKVLRPLRMSFILDKTGLARLEA 500
            +I + +P  +  + D    A+L+ 
Sbjct: 120 TKIIIEKPKSIEALKDDEKFAKLKD 144


>gi|283797241|ref|ZP_06346394.1| type I restriction-modification system DNA methylase [Clostridium
           sp. M62/1]
 gi|291075091|gb|EFE12455.1| type I restriction-modification system DNA methylase [Clostridium
           sp. M62/1]
          Length = 214

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 18/167 (10%)

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +E+        +I    TL        + F   +SNPP+  KWE D + V          
Sbjct: 59  IEAGNDGFDKFDIAHEDTLLNPQHWDDEPFEVIVSNPPYSIKWEGDDNPVLIND-----P 113

Query: 323 RFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           RF P   L   S   + F+MH    L       G AAIV     ++ G A   E +IR++
Sbjct: 114 RFSPAGVLAPKSKADLAFIMHSLAWLAT----NGTAAIVCFPGIMYRGGA---EKKIRQY 166

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           L++N+ I+ I+ LP++LFF T+IAT + +L   K +        I+A
Sbjct: 167 LIDNNFIDCIIQLPSNLFFGTSIATCIMVLKRNKAD---NNTLFIDA 210



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 24/83 (28%)

Query: 4  FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                 L   IW  A++L G     DF   +L     R +   L    +    +    G
Sbjct: 6  KEQERDELHRAIWAIADELRGSVDGWDFKSYVLGMMFYRYISENLTNYINEGEIEAGNDG 65

Query: 64 GSNIDLESFVKVAGYSFYNTSEY 86
              D+     +     ++   +
Sbjct: 66 FDKFDIAHEDTLLNPQHWDDEPF 88


>gi|312887842|ref|ZP_07747429.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
 gi|311299661|gb|EFQ76743.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
          Length = 295

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 129/348 (37%), Gaps = 69/348 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFTLLRRLECALEPTRSAVREKYLAFGG 64
           SA  +AN +W     L  D     + + +  L + L  RL                    
Sbjct: 2   SADEIANKLWNLCNVLRDDGVT--YHQYLNELTYILFLRLS------------------- 40

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +++ F       +  +S  ++       +T   L + I++ S+N     ++   +++
Sbjct: 41  ---EIKKFENELPEGYRWSSLKAIKDNKELFDTYRELLATISTKSENP--TIKEIYTNAS 95

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L K   L  +  +   I+   +   D++ + IYE L+ +  SE   GA  + TPR +
Sbjct: 96  TT-LRKPVNLRTLITSIDLIDWFDEQEQDKI-ATIYEELLEKNASEKKSGAGQYFTPRPL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           +++   LL+          P +     DP  GT GF+  A  ++ +   H+        K
Sbjct: 154 INVMVDLLV----------PKLGERWNDPAAGTFGFMIAADYYLKEKHHHYFELGSKERK 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  + H + +    +  LES         I+ G TLS+   + K F   
Sbjct: 204 FQVDEAFSGCELVQDAHRLALMNAKLHGLES--------RIEMGDTLSELGKSFKNFDGV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           L+NPPFG K            + GE           S+  + FL H+ 
Sbjct: 256 LANPPFGTK------------QGGERPTRDDFTYPTSNKQLNFLQHIY 291


>gi|126440241|ref|YP_001060649.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 668]
 gi|126219734|gb|ABN83240.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 668]
          Length = 866

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 146/484 (30%), Gaps = 74/484 (15%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNID----------------LESFVKVAGYSFYNTS 84
           LR+L         A+R+          D                 E F     Y+F+   
Sbjct: 172 LRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFH--E 229

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             +L    +   +N +   I     +        D  +    L+ A     + +  + + 
Sbjct: 230 LAALPDAKADQVQNAIMDMIKKIRTDKSYG----DVLANPIHLKVAKTFLYLVRQLAAVS 285

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
               T   +     +E+ +R   +   +    + TPR +V L +A++          S  
Sbjct: 286 FTDSTTDSK--GAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLSGA 341

Query: 205 MIRTLYDPTCGTGGFLT------------DAMNHVADCGSHHKIPPIL---VPHGQELEP 249
               + DP CGTGGFL                +   +  +H ++   +   V  G +   
Sbjct: 342 AAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDANE 401

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                    M++     D   ++        T            + L+NPPFG       
Sbjct: 402 GVACAAKMNMIVAG---DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGAL 458

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +           G    + + G +LFL     K+ L    GG    V+    L    
Sbjct: 459 SDKD----------MGQFEVQTTKGQLLFLQ----KMVLSARRGGEICTVIDEGVLNTDT 504

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT--YLWILSNRK------TEERRGK 421
           A      IR+WLL    + A+V LP + F    I     +  L           ++ +  
Sbjct: 505 AAP----IRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVLYLQRMTEEEEEIADDIKYP 560

Query: 422 VQLINATDLWTSIRNEGKKRRIIN---DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           V   +          +  +   ++   D   + IL    +R +GK   + D      R  
Sbjct: 561 VAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTR-SGKHWSVFDVAVSRIRDD 619

Query: 479 KVLR 482
           K  R
Sbjct: 620 KASR 623


>gi|331002121|ref|ZP_08325640.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411215|gb|EGG90631.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 262

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 29/240 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L    E                 
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKEEQDLYNRGYDADNIKEYV 61

Query: 67  IDLES--------FVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            +             +  GY       + +   +G+  T +N+ + ++SFS N     + 
Sbjct: 62  NEEADDSYSSRSSLQQDLGYFIAYKDLFSTWINMGADFTVDNVRTGLSSFSRNISPSHKK 121

Query: 118 FDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
             F+     LE            +   +  + +  + I ++       V+  IYE+LI R
Sbjct: 122 L-FNGIFTTLEVGLSKLGADTKSQTKAVSDLIQLINVIPMN-SRHDYDVLGFIYEYLIER 179

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP +V  L + ++ +  +            +YDPT G    +    N
Sbjct: 180 FASNAGKKAGEFYTPHEVSLLMSEIIAEFLNRRDTI------KIYDPTSGFRVIIMTVAN 233


>gi|320087560|emb|CBY97324.1| type I site-specific deoxyribonuclease [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 130

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G  AIVL    LF G A   E  IRR  LE+  I+ ++ LP +LFF T I   + +L   
Sbjct: 15  GTMAIVLPHGVLFRGGA---EERIRRKRLEDGNIDTVIGLPANLFFSTGIPVCILVLKKC 71

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
           K  +    V  INA++ +      GK++  +N +   +I+D Y  R E  ++SR +    
Sbjct: 72  KKPD---DVLFINASEYFEK----GKRQNRLNKEHISKIVDTYQFRKEEDRYSRRVPLEE 124

Query: 473 FGYRRI 478
                I
Sbjct: 125 IKANEI 130


>gi|298346416|ref|YP_003719103.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236477|gb|ADI67609.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 646

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 149/429 (34%), Gaps = 59/429 (13%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             + S +G    ++ L S  +    + +   ++               LY+         
Sbjct: 244 RLTRSNVGPDAKKDKLLSEFSILKTSFRLNEKNDALGKKTPLRFYTEFLYERVFK----N 299

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +      +  +   Y   +  +     +     +TPR +  L   LL    D +      
Sbjct: 300 IKYQKTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCELLDIKIDDV------ 352

Query: 205 MIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
               + DPTCGTGGFL  AM+ +   AD     K       HG EL+    AV  A M++
Sbjct: 353 ----VLDPTCGTGGFLISAMHRMLSMADTDVQRKSIKKKQLHGFELQSNMFAVAAANMIL 408

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           R       +D + N++    L K+      K     L NPP+ +  + D +  E      
Sbjct: 409 R-------KDGNSNLECCDFLRKNTAQVQLKGATVGLMNPPYSQGTKADTEQYE------ 455

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           + F+ HL + L +    G RAA+++  S +        E + + 
Sbjct: 456 ----------------LSFIEHLLDSLTV----GARAAVIVPQSSM--TGKSKAEKQFKN 493

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +L+   +E ++   ++ F+   +   + I +  +  ++R   + I+  D    +R    
Sbjct: 494 SILDKHTLEGVITCNSETFYGVGVNPVIAIFTANEKHDKRKVCKFIDFRDDGYEVRAHVG 553

Query: 440 KRR-IINDDQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
                   D+R+ +LD++  R     KF  +      G   +            DK    
Sbjct: 554 LLEGDSAKDKRQHLLDVWFGRVEAPSKFC-VESTIEPGDEWLHSFYYFNDEIPTDKDFEK 612

Query: 497 RLEADITWR 505
            +   +T+ 
Sbjct: 613 VIGDYLTFE 621


>gi|53720725|ref|YP_109711.1| putative restriction modification system methylase [Burkholderia
           pseudomallei K96243]
 gi|167740436|ref|ZP_02413210.1| putative restriction modification system methylase [Burkholderia
           pseudomallei 14]
 gi|167817648|ref|ZP_02449328.1| putative restriction modification system methylase [Burkholderia
           pseudomallei 91]
 gi|52211139|emb|CAH37128.1| putative restriction modification system methylase [Burkholderia
           pseudomallei K96243]
          Length = 866

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 146/484 (30%), Gaps = 74/484 (15%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNID----------------LESFVKVAGYSFYNTS 84
           LR+L         A+R+          D                 E F     Y+F+   
Sbjct: 172 LRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFH--E 229

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             +L    +   +N +   I     +        D  +    L+ A     + +  + + 
Sbjct: 230 LAALPDAKADQVQNAIMDMIKKIRTDKSYG----DVLANPIHLKVAKTFLYLVRQLAAVS 285

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
               T   +     +E+ +R   +   +    + TPR +V L +A++          S  
Sbjct: 286 FTDSTTDSK--GAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLSGA 341

Query: 205 MIRTLYDPTCGTGGFLT------------DAMNHVADCGSHHKIPPIL---VPHGQELEP 249
               + DP CGTGGFL                +   +  +H ++   +   V  G +   
Sbjct: 342 AAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDANE 401

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                    M++     D   ++        T            + L+NPPFG       
Sbjct: 402 GVACAAKMNMIVAG---DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGAL 458

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +           G    + + G +LFL     K+ L    GG    V+    L    
Sbjct: 459 SDKD----------MGQFEVQTTKGQLLFLQ----KMVLSARRGGEICTVIDEGVLNTDT 504

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT--YLWILSNRK------TEERRGK 421
           A      IR+WLL    + A+V LP + F    I     +  L           ++ +  
Sbjct: 505 AAP----IRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVLYLQRMTEEEEEIADDIKYP 560

Query: 422 VQLINATDLWTSIRNEGKKRRIIN---DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           V   +          +  +   ++   D   + IL    +R +GK   + D      R  
Sbjct: 561 VAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTR-SGKHWSVFDVAVLMIRDD 619

Query: 479 KVLR 482
           K  R
Sbjct: 620 KASR 623


>gi|254198485|ref|ZP_04904906.1| putative type I restriction-modification system M subunit
           [Burkholderia pseudomallei S13]
 gi|169655225|gb|EDS87918.1| putative type I restriction-modification system M subunit
           [Burkholderia pseudomallei S13]
          Length = 866

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 146/484 (30%), Gaps = 74/484 (15%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNID----------------LESFVKVAGYSFYNTS 84
           LR+L         A+R+          D                 E F     Y+F+   
Sbjct: 172 LRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPYSYTFH--E 229

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             +L    +   +N +   I     +        D  +    L+ A     + +  + + 
Sbjct: 230 LAALPDAKADQVQNAIMDMIKKIRTDKSYG----DVLANPIHLKVAKTFLYLVRQLAAVS 285

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
               T   +     +E+ +R   +   +    + TPR +V L +A++          S  
Sbjct: 286 FTDSTTDSK--GAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLSGA 341

Query: 205 MIRTLYDPTCGTGGFLT------------DAMNHVADCGSHHKIPPIL---VPHGQELEP 249
               + DP CGTGGFL                +   +  +H ++   +   V  G +   
Sbjct: 342 AAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDANE 401

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                    M++     D   ++        T            + L+NPPFG       
Sbjct: 402 GVACAAKMNMIVAG---DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGTSESGAL 458

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +           G    + + G +LFL     K+ L    GG    V+    L    
Sbjct: 459 SDKD----------MGQFEVQTTKGQLLFLQ----KMVLSARRGGEICTVIDEGVLNTDT 504

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT--YLWILSNRK------TEERRGK 421
           A      IR+WLL    + A+V LP + F    I     +  L           ++ +  
Sbjct: 505 AAP----IRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVLYLQRMTEEEEEIADDIKYP 560

Query: 422 VQLINATDLWTSIRNEGKKRRIIN---DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           V   +          +  +   ++   D   + IL    +R +GK   + D      R  
Sbjct: 561 VAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTR-SGKHWSVFDVAVLMIRDD 619

Query: 479 KVLR 482
           K  R
Sbjct: 620 KASR 623


>gi|325996787|gb|ADZ52192.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
          Length = 528

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 113/290 (38%), Gaps = 28/290 (9%)

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             P   +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    
Sbjct: 11  ARPPEKNGDFAFLLHIIKSLK----DTGKGAVILPHGVLFRGNA---EGVIRKNLLMKGY 63

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ L  +LF+ T+I   + +L       R+G V +I+A+  +    N+ +    + D
Sbjct: 64  IKGVIGLAPNLFYGTSIPACVIVLDKENAHARKG-VFMIDASKDFKKDGNKNR----LRD 118

Query: 447 DQRRQILDIYVS-RENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADIT 503
              ++++D + + +E   +S+M+           + + R +     L+K   A + +   
Sbjct: 119 QDVQKMIDTFNAYKEIPYYSKMVSLEEISANDYNLNIPRYIASKRELEKDLFALINSPSY 178

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK-----------A 552
             K      + +  + K +   ++     E +     +    K L  +            
Sbjct: 179 LPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKELITQSLEYQTFHASVL 238

Query: 553 SKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
           S    +     F   +P  +P T +  E +    L E+E +  L+    Y
Sbjct: 239 SAFESLELFTTFNDLEPGFNPKTLI--ESVCQKVLKEFEKIGILDKYGVY 286


>gi|213027397|ref|ZP_03341844.1| hypothetical protein Salmonelentericaenterica_35384 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 306

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 103/307 (33%), Gaps = 49/307 (15%)

Query: 7   SAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   L   +WK  ++L  G   + ++   +     L+          +     YL  G  
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKM------CKETGQEADYLPEGYR 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
             DL+S +      FY      L  LG                   K       F +   
Sbjct: 56  WDDLKSRIDQEQLQFY---RKMLVHLGED-----------------KKKLVQAVFHNVCT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            + +   + ++  N   ++ +  T         ++YE L+++  +E   GA  + TPR +
Sbjct: 96  TITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
           +     LL           P     + DP  GT GFL +A  +V           G    
Sbjct: 156 IKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P T  + +   L+  +E +     +  I+ G+TL  D     +    
Sbjct: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQADIV 263

Query: 296 LSNPPFG 302
            +NPPFG
Sbjct: 264 ATNPPFG 270


>gi|291563845|emb|CBL42661.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SS3/4]
          Length = 676

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 139/442 (31%), Gaps = 61/442 (13%)

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                S +G    R+ L S  +    +A+    D     T  +     L   +  N    
Sbjct: 278 RRLKASNVGPDAKRDKLMSEFSIIRTSARLNEVDAKLGKTPLKFYTEFLKKNVFDNI--- 334

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                +  +  +   Y   +  +     +     +TPR +  L   LL          + 
Sbjct: 335 --KYRSSSEDFIGRFYGEFMS-YSGGDGQTLGIVLTPRHICDLFCDLL----------NV 381

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGM 259
                + DP CGT GFL  AM+H+ +         K       HG EL+    A+    M
Sbjct: 382 QPSDIVLDPCCGTAGFLVAAMHHMLEKAGTDQVKRKNIKKKQLHGFELQSNMFAIAATNM 441

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           ++R  + +        ++Q           K     + NPP+ +  + D           
Sbjct: 442 ILRD-DGNSNIKCEDFLRQNPA----QVQLKGATVGMMNPPYSQGTKADP---------- 486

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                       S   + F+ HL + L      G RAA+++  S +        E   + 
Sbjct: 487 ------------SQYELSFVEHLLDSL----TEGARAAVIVPQSSM--TGKTKDEQTFKE 528

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +L++  +E ++   TD F+       + + +  +        + I+  +    +R    
Sbjct: 529 NILKHHTLEGVITCNTDTFYGVGTNPVIAVFTAHEPHPDDKTCKFIDFRNDGYEVRAHVG 588

Query: 440 K-RRIINDDQRRQILDIYV--SRENGKFS-----RMLDYRTFGYRRIKVLRPLRMSFILD 491
                   D+R+ +LD++   ++   KF      +  D     +       P  M F   
Sbjct: 589 LVEGDSAKDKRQHLLDVWNGSTKAASKFCVESTVKAEDEWLHSFFYFNDDIPAEMDFEKA 648

Query: 492 KTGLARLEADITWRKLSPLHQS 513
                  E  +  +    L Q 
Sbjct: 649 IGDFLTFEFSMIMQNREYLFQQ 670


>gi|32263452|gb|AAP78480.1| M.AhdI [Aeromonas hydrophila]
          Length = 532

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            A+ E          D E+ ++     F  +  +S+    +   R   +  I        
Sbjct: 146 EALEEICKLVYAKLFDEENAIRTGEVLFQRSGRWSVEECAAE-IRRLYDLAINDDKAIFS 204

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEV 170
                +D S  + + E   L        + I  H D  + P  +    +++++      V
Sbjct: 205 NKIPSYDRSRGVFK-ETLLLSSAAIVRATEILQHYDISSSPVDIKGRAFQNVL---LPAV 260

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD- 229
             G   + TP++V+     ++          SP +   + DP CG+G FLT A+++V + 
Sbjct: 261 RSGMGQYFTPKEVIDFIICMM----------SPNVRELVVDPFCGSGHFLTSALDYVRNS 310

Query: 230 CGSHHKIPPILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            G   K+         HG E       + +  M +     D   ++          +   
Sbjct: 311 HGKADKLFHEFAFTRLHGIEKSDRMVRIAMTDMRLHG---DGHSNIRCTDALLPFDNYPD 367

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + F   ++NPPFG     D           + G F   L + +  S L ++ L   L
Sbjct: 368 LYRETFDLVVTNPPFGVDLPADALH--------QFGPFELALDRKTAIS-LEIVALERCL 418

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIA 404
           +L    GGR AIV+    L    +      +R WL+E+ +I AIV+LP + F  F  NI 
Sbjct: 419 QLLKP-GGRMAIVIPDGVL----SNKNTQYVRDWLVEHAVIRAIVSLPIETFSPFGANIK 473

Query: 405 TYLWILSNRKTEERRGKVQLINATDL 430
           T + +L   +  E   K++ +  +++
Sbjct: 474 TSVLVLRKLRPNEDISKLRKVFMSEI 499


>gi|70730332|ref|YP_260071.1| type I restriction-modification system, M subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68344631|gb|AAY92237.1| type I restriction-modification system, M subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 580

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/447 (15%), Positives = 144/447 (32%), Gaps = 51/447 (11%)

Query: 38  FTLLRRLECALEPTRSAVR---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
              L+RL+                    ++       +   ++ +       Y   +   
Sbjct: 36  LIFLKRLDDIASADDEEGLPSVFQVLMPDEVHPPNKHHSFWKNLLMHRDPGTYLNDQIFP 95

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                     N  S +     N   +  D  F        K+  L  +      +  +P 
Sbjct: 96  WLRSLEMRTGNYPSLVKRLGLN--GMLSDAYFQ---LDPSKSQALTGLVHAIDELFPYPG 150

Query: 149 TVPDRVM--SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                      ++E+L  +  +  +      +T R +     ALL          +P   
Sbjct: 151 QKRQEGFSPGEVFEYLFTQGSTSSN--IGPLVTARHITRFMVALL----------APLPG 198

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSH------HKIPPILVPHGQELEPETHAVCVAGML 260
           + + DP  GTGGF+  A  ++    +        +I       G +L      +    +L
Sbjct: 199 QRIIDPAAGTGGFMVSAQQYMLSRHARLSAATKKQIHNGHSLVGIDLSHTLARIGWVNLL 258

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +ES      +  +   S  +   +  + + + LS+ PFG + +  + A    +    
Sbjct: 259 LHDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVLSDLPFGGRIDPQEAA--GANYLPF 316

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R   G  +     +LF+    N L++    GG AA+++  + L        + ++RR 
Sbjct: 317 YARDDQG-NRSDKVELLFVWRALNLLQV----GGSAALIIPQNLLVGRSQ--AQIDLRRE 369

Query: 381 LLENDLIEAIVALPTDLF-FRTNIATYLWILSN-------RKTEERRGKVQLINATDLWT 432
           LL    +EA++ LP  +F   T I   + ++                 +   +   ++  
Sbjct: 370 LLSRHSVEAVILLPGAIFNPYTGIKAAILVVRKVTDHQALASPHVAPPQTDAVWFYEVTQ 429

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR 459
              +   KR+ +  D    + D +V  
Sbjct: 430 DGHSMDHKRKELPADADNDLFDAFVHF 456


>gi|206895207|ref|YP_002246423.1| N-6 DNA methylase [Coprothermobacter proteolyticus DSM 5265]
 gi|206737824|gb|ACI16902.1| N-6 DNA methylase [Coprothermobacter proteolyticus DSM 5265]
          Length = 209

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 13/213 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T    +L N++W+ A  + G      F   ILP   L+RL    E   + + E++ 
Sbjct: 1   MATNTLDLPTLENWLWEAACKIRGPVDAPKFKDYILPLIFLKRLSDVFEDEVNHLAEEFG 60

Query: 61  AFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKA 113
           +   +   +E   +       FY   E     +    T       ++   +A  +     
Sbjct: 61  STDVAWKLVEEAHQHGQPLVRFYLPPEARWDVIRQKTTGLGEYLTDVMRAVARENPKLHG 120

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + +  DF++T    R+     L ++ +  S   L    V   ++   YE+L+R+F     
Sbjct: 121 VIDVVDFNATAAGQRIIDDPPLAELIQVLSKYRLGLKDVEPDILGRAYEYLLRKFAEGWL 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
             A   +     + L   ++        K    
Sbjct: 181 GAAGSVVA----LVLMAGIIYTLYTNSLKREKP 209


>gi|256375106|ref|YP_003098766.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919409|gb|ACU34920.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 677

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 100/279 (35%), Gaps = 50/279 (17%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             +      +E L  RF           +TPR++  L   L                 T+
Sbjct: 115 ASEDGAEAAFEQLHDRFVEANWR--GVAVTPRELARLMVDL------------TEPHGTV 160

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           +DP CGTG  L  A+          +  P + P GQEL+P    V +A +     E+  R
Sbjct: 161 FDPACGTGALLRAAV----------RSEPGIRPVGQELDPSLAQVAIARLAFAAGEASVR 210

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                    G +L  D F        +SNPPF  +    ++            R+  G+P
Sbjct: 211 S--------GDSLRNDAFPELVADVVVSNPPFNIRNWGAEELAYDR-------RWVYGVP 255

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              +  + ++ H    L      GG A +++  +             IR  LL +  + A
Sbjct: 256 PKGESELAWVQHCLAHLRP----GGHAVVLMPPAVASRRSGRP----IRAELLRSGTLRA 307

Query: 390 IVALPTDLFFRTNIATYLWILSNRKT--EERRGKVQLIN 426
           +VALP       ++   +W+L   +    +RR  V  I+
Sbjct: 308 VVALPPGAAAPLHVGLQIWVLRRPEPGGADRR-TVLFID 345


>gi|167644296|ref|YP_001681959.1| N-6 DNA methylase [Caulobacter sp. K31]
 gi|167346726|gb|ABZ69461.1| N-6 DNA methylase [Caulobacter sp. K31]
          Length = 657

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 158/428 (36%), Gaps = 72/428 (16%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--SYIASFSDNAKAIFEDFDFSSTIARLEK 129
           F K+         E+  S    T     L+    I    D  K  +     ++ +  L+ 
Sbjct: 212 FCKIHDERDSPEVEFFASANERTGINGPLKVKKRIDGLFDAVKEDYPAIFQANDVVALKP 271

Query: 130 AGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             L Y      S ++++     D  V  + YE ++    S +     +F TPR++ ++A 
Sbjct: 272 PVLAY----IVSQLQMYSLLESDVDVKGHAYEEIVG---SNLRGDRGEFFTPRNICNMAV 324

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--- 245
           ++L           P   +T+ DP CGTGGFL  AMNHV +     ++      +G+   
Sbjct: 325 SML----------DPSEGQTILDPACGTGGFLISAMNHVIEKIRVAELEKWKGDYGRADP 374

Query: 246 -----------------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                            +  PE        M++             N  +     ++   
Sbjct: 375 KIAARISKFAGACIVGLDFNPELVKATKMNMVMN--NDGAGGLYQANSLESPATWEEALR 432

Query: 289 GKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF------GPGLPKISDGSMLF 338
            ++         +NPPFG K   D  A+ +++  G    +            I       
Sbjct: 433 DRKLIGSVDLIFTNPPFGSKIPVDDPAILEKYDLGHSWSYNEEIDSWTMNESIQKSQPPE 492

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++ +   ++    G GR A+VL    L +     G   +R W+L+N  + A + L  D F
Sbjct: 493 ILFIERCVKFLKPGTGRVAMVLPDGILGS----PGLGYVREWILKNTWVLASIDLHPDTF 548

Query: 399 F-RTNIATYLWILSNRKTEERRGKVQLINA------TDLWTSIRN-----EGKKRRIIND 446
               ++ T + +L  RKT+E   ++ L +A       +++ ++ N     +   +  + D
Sbjct: 549 QPNVSVQTSVLVL-QRKTDE---QIALEDAAGRKNDYNVFMAVANHIGHDKRGNKTYVRD 604

Query: 447 DQRRQILD 454
            +  +I++
Sbjct: 605 RKGNEIVE 612


>gi|291539611|emb|CBL12722.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 200

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  LWG    +++  VI+    LR +  A +     +  +  
Sbjct: 1   MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLRYISTAFDKKYQQLLSE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    +    F+   E     + +   +       +N    I + +   K 
Sbjct: 59  ---GDGFEDDPDAYLEDNVFFVPVEARWDKIAAAAHKPEIGTTIDNAMRAIEADNKKLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L  +   F+ +++        V+   YE+ I +F  +  +G
Sbjct: 116 VLPKNYASPDLDK----RVLGDVVDLFTNMDMGETEGNRDVLGRTYEYYIAQFAEKEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDA 197
             +F TP  +V+   ++L    + 
Sbjct: 172 GGEFYTPSSIVNTLASILKPYSNC 195


>gi|228475644|ref|ZP_04060362.1| N-6 DNA methylase [Staphylococcus hominis SK119]
 gi|228270426|gb|EEK11861.1| N-6 DNA methylase [Staphylococcus hominis SK119]
          Length = 238

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 10/215 (4%)

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             I+ +   LF+G  G GES IR++++END +E I+ L  DLF+ T I+TY+WI++  K+
Sbjct: 1   MTIIHNGFALFSGNPGGGESLIRQYVIENDWLEDIIQLSNDLFYNTEISTYIWIITKNKS 60

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKF--------SR 466
            +R+GKVQLI+A++++ +      K+R+ I+   R  I+  Y   +N ++        S+
Sbjct: 61  PKRQGKVQLIDASNMYENRHKNIGKKRVDISKACREMIVQAYGEFDNKEYRFDDRTVESK 120

Query: 467 MLDYRTFGYRRIKVLRPLR-MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +L+  +FG+ R+ + RP R  +  +       +  D + R    +++ F  +++      
Sbjct: 121 ILNNESFGFTRVTIERPERNENGNIVYKKNGNMSIDTSLRDTEDINEYFQREVIPFSPDA 180

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                  +   +        K    + S++     
Sbjct: 181 KMDRKKDKIGYEIPFTRLFYKYTPPEPSETISERI 215



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 29/229 (12%)

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +D  +   D++ + E   +  ++       R+ KV        I           +I  +
Sbjct: 33  EDIIQLSNDLFYNTEISTYIWIITKNKSPKRQGKV------QLIDASNMYENRHKNIGKK 86

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
           ++        + +          Y + +  V+  I +NE+                    
Sbjct: 87  RVDISKACREMIVQAYGEFDNKEYRFDDRTVESKILNNESFGF---------TRVTIERP 137

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
            ++   + V   NG    DT+L + E       I +YF REV P  PDA        + D
Sbjct: 138 ERNENGNIVYKKNGNMSIDTSLRDTE------DINEYFQREVIPFSPDA--------KMD 183

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           ++  ++GYEI F R FY+Y P    + I   +K +E  I    + ++ +
Sbjct: 184 RKKDKIGYEIPFTRLFYKYTPPEPSETISERIKQLEESIVKNFQVLSGK 232


>gi|293115501|ref|ZP_05791808.2| putative type I restriction-modification system, modification
           subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809619|gb|EFF68824.1| putative type I restriction-modification system, modification
           subunit [Butyrivibrio crossotus DSM 2876]
          Length = 587

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 166/444 (37%), Gaps = 75/444 (16%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNNLES---YIASFSD 109
           + ++Y+    +  D+ S ++  G S Y    S    + L   N   +L+S   YI +   
Sbjct: 20  LEKEYMNVEKNGYDIASRLRNFGISNYYKVVSAAYAAYLAKANQLEDLQSLLNYINTELP 79

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + +  F     S                +    + L      D                 
Sbjct: 80  DEQQYFLKDQTSDVYWMSVIEISKVYTVETLLAVVLWMTNSMD----------------- 122

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +  TP  +V LA  LL   +            ++ D   GTG FL+ A      
Sbjct: 123 GRKFGGESETPLSIVKLAYGLLKPEN-----------ESIADFCSGTGVFLSYAA----- 166

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                ++    + +G E+      +    M +           +  I+QGS  S D    
Sbjct: 167 -----QMNKGSLYYGIEINTLAKELSEIRMSL--------LTDNHLIRQGSVFSMDA--D 211

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F    S+ P+  +  K   A   E    E+ +  P L + +     F++++   L+  
Sbjct: 212 RTFDKIFSDSPWNVRSWK---ANSDEQTINEIEQIVPELKRATTADWHFIVNVMRHLK-- 266

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+A +  S+   +NG        IR  +++   +EA+++LP +L+  T+I T + +
Sbjct: 267 --EEGKAVVTSSNGLTWNGGIS---KAIRERIVKLGWLEAVISLPANLYSTTSIPTSILV 321

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           LS +   + +G V+LI+A+D+ T  R     +  ++D+   +IL++    +N   S+++ 
Sbjct: 322 LSKK---DNKG-VRLIDASDMATVGRR----QNELDDEAINEILELMT--KNSANSKLVS 371

Query: 470 YRTFGY--RRIKVLRPLRMSFILD 491
                     I   R L+    ++
Sbjct: 372 IDEIATQDYAINPSRYLQKEVKVE 395


>gi|320010361|gb|ADW05211.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 702

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 92/274 (33%), Gaps = 32/274 (11%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             ++ L  R     +   +  +TP  +  L   L     D + +      RT+ DP  GT
Sbjct: 165 QAFDFLFGR--QLDANPRQYTLTPPGLAELMADLAQPAGDTVRRGGGSDSRTVLDPAAGT 222

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L                      + QE +P   A+    + +   +       +   
Sbjct: 223 GALLCAVGR-------------PTALYAQEADPGLSALTALRLALH-TQGSGADAPTLTA 268

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           + G TL  D F G      L +PPF ++     D            R+  G P  ++  +
Sbjct: 269 RTGDTLRTDAFPGLTVDTVLCHPPFNERNWGHDDLAYD-------PRWEYGFPARTESEL 321

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H    L      GG A +++  +             IR  LL    + A++ALP  
Sbjct: 322 AWVQHALAHLR----EGGTAVVLMPPAAASRRSG----RRIRADLLRRGALRAVIALPAG 373

Query: 397 LFFRTNIATYLWILSN-RKTEERRGKVQLINATD 429
                 I  ++W+L           ++ +++A +
Sbjct: 374 AAPPYGIPLHIWVLRKPGAGRPPAPELLVVDAAE 407


>gi|325680372|ref|ZP_08159929.1| hypothetical protein CUS_4297 [Ruminococcus albus 8]
 gi|324107932|gb|EGC02191.1| hypothetical protein CUS_4297 [Ruminococcus albus 8]
          Length = 216

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 9/212 (4%)

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLE--ADITWRKLSPLH-----QSFWLDILKP 521
            Y     R   +L    +S + D   +A LE   ++T ++L  L      +  +  I++ 
Sbjct: 7   SYAVTEERIQAMLSKGSLSSLYDPAKVAELENSEELTGKELKKLENFQNNKPVYDAIIEA 66

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           +   I    +    VKE +             K  +    +     D  A+   D  G  
Sbjct: 67  LNNSIDDKIYLS--VKEFMPVLTKILSTATTDKKLLDKIADGLSVMDKSAEIQRDKKGNI 124

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           I D    + E V + ESI+DY  REV PHVPDA         K   + R G EI F R+F
Sbjct: 125 IYDKETKDTEIVKFDESIEDYMAREVLPHVPDAQWFFEEDLSKKSPVIRTGAEIPFTRYF 184

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y+YQ  +  ++++     +E  ++  +  +  
Sbjct: 185 YKYQQPKPSEELEQRFMELEKSVSERIARLFG 216


>gi|330467457|ref|YP_004405200.1| hypothetical protein VAB18032_17490 [Verrucosispora maris
           AB-18-032]
 gi|328810428|gb|AEB44600.1| hypothetical protein VAB18032_17490 [Verrucosispora maris
           AB-18-032]
          Length = 683

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 116/314 (36%), Gaps = 39/314 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +T+A +    L  +     + +    D +   R   + +E+L  ++ S     +    
Sbjct: 104 LDATLATMVSDALPRQWTAQLTALLRSADQLSSARGAESAFEYLHSQYVSSAQSVSGLAG 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +  A+             G+    +D T GTG  L  A +     G+  +   
Sbjct: 164 TPESVADVMVAVA------------GVGTHTFDFTSGTGSILRMAADRALRSGATTRC-- 209

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 QE+ P+   +    +    L +           +  G +L  D     R    +
Sbjct: 210 ----FAQEINPQYALITSLRLWFVHLRAQQAGHHTPPPVVHVGDSLLADALPDLRADVVV 265

Query: 297 SNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +N PFG   W  D+ A +         R+  GLP  ++  + ++ H    L    +  G 
Sbjct: 266 ANFPFGIHDWGHDRLAYD--------PRWTYGLPPRTEPELAWVQHALAHL----SPNGT 313

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A +++  +             IR  L+    + AI+ALP  L   TNI  ++W+L+    
Sbjct: 314 AVVLMPPATASRPAG----RRIRAELIRRHALRAIIALPAGLMLPTNIGLHIWVLAQPDP 369

Query: 416 EE-RRGKVQLINAT 428
           +  R G++  ++AT
Sbjct: 370 QHPRVGELLFVDAT 383


>gi|86141515|ref|ZP_01060061.1| putative DNA restriction-modification system, DNA methylase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832074|gb|EAQ50529.1| putative DNA restriction-modification system, DNA methylase
           [Leeuwenhoekiella blandensis MED217]
          Length = 816

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 94/601 (15%), Positives = 196/601 (32%), Gaps = 84/601 (13%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
            ++   + LS       +N    +  S  +   +  E     S I  +    L     + 
Sbjct: 34  HHHVYLFLLSAYYDGIIKNVHIDFSNSLCNYIFSSLESEQKYSEILNVYIPILKSIPEER 93

Query: 140 FSG----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
            +     + +  + + DR    I++ L+ R      + + +F+ P ++      +   P+
Sbjct: 94  LNEVLHQLTMFNNEILDRYFDEIFDDLLFRLADNQGKYSGEFLLPNEISKFVVEIADMPN 153

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                       ++++P  G   F T              +      +GQE+   T A+ 
Sbjct: 154 ----------WASVFNPFAGLASFATH-------------LNKNQNYYGQEIVSSTWALG 190

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           +  ++     +     +  +I               F   +SNPPF  K +         
Sbjct: 191 MLRLMRLHKHTQINYRVEDSIHN-------WPGTNNFDLIISNPPFNYKIDP-------- 235

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +     GR            M    ++  K     N  G+ A ++S   LF    GS + 
Sbjct: 236 YIAHYFGR----------KKMTAETYVICKGLESINFDGKVACIVSQGMLFR---GSDDQ 282

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R  L+E  LIE IV+LP+ +   T I   + IL+ +K   R   +++I+A+    S  
Sbjct: 283 RLRESLVEQGLIETIVSLPSGMLKHTGIPICIMILTRKKNINRT--IKMIDASSFVES-- 338

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +++R+  +     +     S+   +    +           +              L
Sbjct: 339 KGKREKRLETNRLLEHLYKFSRSKAVVE----VPIEQIRKNNYNLNVQRYFVEDFRGVPL 394

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
            ++   I+ +++          I    ++       +       IK  E  +  +K    
Sbjct: 395 IKVVKRISGKRVGKEKTLIGKFIRTSNLK---DNDVSYQLDLNEIKERELPSHSIKIEND 451

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR-EVSPHVPDA 614
            I+        K      + +  GE I       Y  +  L  I+ Y    EV+PH   +
Sbjct: 452 CILISTRWKSLK----PTLFEYKGEPI-------YIGIDLLA-IRVYSENFEVNPHYLIS 499

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNR--FFYQYQPSRKLQDIDAE---LKGVEAQIATLLE 669
            +    + ++       G   + NR  FF        +++  A+   +  +  +   L +
Sbjct: 500 ELRSPNVLKQVSAFQNPGAITSLNRADFFAIKIALPSIEEQKAKVQGILELSEKFKILQQ 559

Query: 670 E 670
           E
Sbjct: 560 E 560


>gi|307325247|ref|ZP_07604450.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
 gi|306889051|gb|EFN20034.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
          Length = 573

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 38/272 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L+ R  +  +    + MT   +  +  A     DDA       +  T+YDP CG G
Sbjct: 127 LYADLVERCIASTTRSGGEPMTTLALERIVAAFTGSADDAAGASDRTIG-TVYDPACGIG 185

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+             P    +GQEL P T A+      +           +  + 
Sbjct: 186 TLLLTAV-------------PGAHRYGQELNPATAAIAEFRARLDG--------RTATLA 224

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L KD F   R    + +PP G       D +          R+  G+P  S+  + 
Sbjct: 225 CGDSLRKDAFPDLRADLVVCDPPVGVPDWGRDDLLLD-------PRWELGVPPRSESELA 277

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H           GGRA +VL SS  +          IR  L+   L+ ++VALP  L
Sbjct: 278 WVQHCYAH----TAPGGRALLVLPSSVAYRKTG----RRIRAELVRRGLLASVVALPPGL 329

Query: 398 FFRTNIATYLWILSN-RKTEERRGKVQLINAT 428
               +   +LWIL    + +     +++I+ +
Sbjct: 330 MSSHSQPVHLWILRRPAQGDPAPTHIRMIDLS 361


>gi|167752500|ref|ZP_02424627.1| hypothetical protein ALIPUT_00751 [Alistipes putredinis DSM 17216]
 gi|167659569|gb|EDS03699.1| hypothetical protein ALIPUT_00751 [Alistipes putredinis DSM 17216]
          Length = 190

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 10/195 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IWK A+ + G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MATMNTADIGFEREIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFETKYRQLVAEGE 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFE 116
            F     +       A   FY  +E     + +          +++ + +     K   +
Sbjct: 61  GFEEDKDEY-----TAENIFYVPTEARWERIAAEAHTPEIGQVIDNAMRAIEKENK-RLK 114

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D    +          L  +   F+ I +H       ++   YE+ + +F     + A +
Sbjct: 115 DILPKNFARPELDKRRLGDVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAEGKLAGE 174

Query: 177 FMTPRDVVHLATALL 191
           F TP  +V     LL
Sbjct: 175 FYTPACIVKTLLMLL 189


>gi|311900119|dbj|BAJ32527.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 479

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 101/286 (35%), Gaps = 36/286 (12%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +V       +   L+ R    +     D+ TPR +V L  A +           PG   T
Sbjct: 132 SVSADDEGEVLSDLLERALQHLRGSDPDYYTPRALVDLVVATV----------RPGPDDT 181

Query: 209 LYDPTCGTGGFLTDAMNHVADCG-SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           + DP C  G FL  A  ++ +               G E       +  A +L+  +   
Sbjct: 182 ITDPACKAGSFLIAAHRYIREHDPGTEPRSAGGRIRGNES--ALIGLAGANLLLHGI--- 236

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +   S  +     G      ++NPPFG     +K  VE              
Sbjct: 237 TEHADCPGVTNESPFALPPMPGAT--VVIANPPFGTMKGGEKSVVES---------RADL 285

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + S  ++ +L H+ + L      GGRA +++  S LF   A     ++RR LL+   +
Sbjct: 286 PVRTSSKALDYLQHIMSVLLP----GGRAGVIVPDSVLFATGAA---RDVRRLLLQTFDV 338

Query: 388 EAIVALPTDLFFRT-NIATYLWILSNRKTEERRGKVQLINATDLWT 432
             ++ LP   F     + T + +   +   ERRG    +   DL T
Sbjct: 339 HTLIRLPAGAFPTARGVRTSILLFDRQ-PTERRGPGGPLWVYDLRT 383


>gi|227511526|ref|ZP_03941575.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085260|gb|EEI20572.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
          Length = 193

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 17/204 (8%)

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFR 400
           +   L+      GR A+VL    LF G A   E +IR++++E D  ++A++ +P +LF+ 
Sbjct: 1   MLYHLKT----DGRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYG 53

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +    +       +  I+A+  +   +N    +  + D+  ++I+D Y  R+
Sbjct: 54  TSIPTVVLVFDKSRINH---DILFIDASKDFEKGKN----QNNLTDENVKKIIDTYKDRK 106

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +  KF+ + D++        +  P R     +      ++  +   K +    S      
Sbjct: 107 DVKKFAHVADFKEIKENEFNLNIP-RYVDTFEPEPPVDVDKLVADIKDTDEQISKLESEF 165

Query: 520 KPMMQQIYPYGWAESFVKESIKSN 543
             M+  +             IK  
Sbjct: 166 SSMLDDLEGKNPVAQQQLTKIKEL 189


>gi|153871780|ref|ZP_02000864.1| type I restriction enzyme StySPI M protein [Beggiatoa sp. PS]
 gi|152071755|gb|EDN69137.1| type I restriction enzyme StySPI M protein [Beggiatoa sp. PS]
          Length = 469

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 121/409 (29%), Gaps = 73/409 (17%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
               + G      S+Y    L         N  +  I   S  +          +     
Sbjct: 39  KMAPILGKIHLMPSDYRWELLIQKSGIEQYNYYQEVIKILSQASDPYIAGLYAHADTF-F 97

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +    L ++    S I      +P   +  +YE L+ R      +G      PR +V L 
Sbjct: 98  KTPEQLAQVITTLSTIN-----IPIEDLGEVYEILLERCAYL--DGGRLHQVPRSLVDLM 150

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVP 242
             L            P     + DP  GT  F+     ++            + PP    
Sbjct: 151 VILT----------QPQPGELIQDPLAGTASFVVATNEYMQVINDEFSESSSQGPPKNQT 200

Query: 243 HGQ-------------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             Q             E +   H + +   L+ R+       +    + G +L  +L   
Sbjct: 201 QNQNKFCTLETNFLAVEPDLIRHRLALMNCLLHRINHSQHLPV----RWGDSLLSNLEKW 256

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    LS   F     ++                        D S+  L H+   L+  
Sbjct: 257 PQADVILSILVFASDLSEELG--------------------KHDASLALLQHIYQTLKP- 295

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRAA++L    L    A     ++R  LL+  ++  ++ LP  +F+   +  +L  
Sbjct: 296 ---GGRAAVILPDKLL---NAVGPAQQVRGTLLDTCVLHTVLRLPHGIFYPYKVPAHLLF 349

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
                T +   K + +   DL       G+  R +  +       IY  
Sbjct: 350 FWRGHTADE--KTENVWFYDLRAKCPIFGQYLR-LKREHLMSFEKIYGD 395


>gi|219871847|ref|YP_002476222.1| restriction enzyme subunit alpha/N-6 DNA methylase [Haemophilus
           parasuis SH0165]
 gi|219692051|gb|ACL33274.1| restriction enzyme, alpha subunit/N-6 DNA methylase [Haemophilus
           parasuis SH0165]
          Length = 637

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 152/452 (33%), Gaps = 60/452 (13%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTRNNLESYIASFSDNAKAIF 115
           +Y  F   N++ +  +K  G   Y   + +L  + +     ++ L S      D      
Sbjct: 214 EYKNFDIDNLNGDE-IKTDGQKIYEAIQANLDRAQVKPQVKKDKLLSQFLVIRDTKAI-- 270

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
              + +ST+ +         I ++     +      +  +   Y   +  +     +   
Sbjct: 271 --NEINSTLGKTPLKHYTQFIYEHIYK-NIKYIHSAEDYLGRFYGEFMS-YSGGDGQTLG 326

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGS 232
             +TPR +V L   L+                +++DP CGT GFL  AM+H+    D  +
Sbjct: 327 IVLTPRHIVELFCELI----------DLKPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEA 376

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGK 290
             +       HG EL+P    +    M++R        D   N++Q   L ++      K
Sbjct: 377 EKRKIRKEQLHGIELQPYMFTIATTNMILRG-------DGKSNLEQEDFLKQNPAQLQLK 429

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
             +  + NPP+ +  + + +  E                                L    
Sbjct: 430 GCNVGMMNPPYSQGSKANPNLFEISFT--------------------------EHLLDSL 463

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+A +++  S +        E  I+  +L+   +E ++ L  + F+       + + 
Sbjct: 464 TADGKAIVIVPQSSM--TGKSKEEQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVF 521

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFSRMLD 469
           S     E+   V+ IN  +    ++        I+  D+++ +LD++  R   +    ++
Sbjct: 522 STGIPHEKDKIVKFINFENDGFEVQKHIGLVETISAKDKKQHLLDVWFGRIEAESKFCVE 581

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
                              I  +    ++ AD
Sbjct: 582 TTIEADDEWLHSFYYFNDEIPTEADFEKVIAD 613


>gi|207109985|ref|ZP_03244147.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 138

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 21/157 (13%)

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGG 354
           SNPP+  KW  D + +    +     RF P   L   +   + F MH+ + L    +  G
Sbjct: 1   SNPPYSTKWVGDSNPLLMNDE-----RFSPAGVLAPKNAADLAFTMHMLSYL----SNSG 51

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LFF T+IAT + +L   K
Sbjct: 52  TAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPENLFFGTSIATCILVLKKNK 108

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            ++       I+A+  +        K+  + +  R +
Sbjct: 109 KDDT---TLFIDASKEFVK----EGKKNKLKEHNREK 138


>gi|326802729|ref|YP_004320547.1| hypothetical protein HMPREF9243_0135 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651519|gb|AEA01702.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 262

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 87/262 (33%), Gaps = 33/262 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREK---- 58
            +    ++   +W +A  L       ++    L     + L    LE T   + E     
Sbjct: 1   MSEQVTTIQQALWNSANVLRSKMDANEYKNYTLGIIFYKFLSDQLLEKTCDLMGEDFVDL 60

Query: 59  ------YLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLE--------S 102
                 Y        D E  +    Y++  T   +++ +        NN           
Sbjct: 61  NQAQALYEETYYDEEDGEDLLNELRYTYSYTIHPDFTFTKFMEKINDNNFMLEELAQGFR 120

Query: 103 YIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            I     + + +FED D  S        ++   +  + K  +G+    +     ++ + Y
Sbjct: 121 DIERSHPDFENLFEDVDLMSRRLGPTPQKRNQTITAVMKELAGLNFAKNA---DLLGDAY 177

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+ +F SE  + A +F TP+ V  L T + +   +        +  T YDPT G    
Sbjct: 178 EFLLGQFASESGKKAGEFYTPQPVSELMTRIAIQGKED------KLGLTAYDPTMGFRVI 231

Query: 220 LTDAMNHVADCGSHHKIPPILV 241
           +    N   +  S   +P    
Sbjct: 232 IVIEANSYVNIRSSRLLPKFKT 253


>gi|254300673|ref|ZP_04968118.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 406e]
 gi|157810477|gb|EDO87647.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 406e]
          Length = 605

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 121/383 (31%), Gaps = 52/383 (13%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A     + +  + +     T   +     +E+ +R   +   +    + TPR +V 
Sbjct: 6   HLKVAKTFLYLVRQLAAVSFTDSTTDSK--GAAFEYFVR--ATLKGKKLGQYFTPRPLVR 61

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT------------DAMNHVADCGSH 233
           L +A++          S      + DP CGTGGFL                +   +  +H
Sbjct: 62  LMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATH 121

Query: 234 HKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            ++   +   V  G +            M++     D   ++        T         
Sbjct: 122 RELVRKIRQQVFFGSDANEGVACAAKMNMIVAG---DGHSNIQPENSLARTAKNWNIQDS 178

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
              + L+NPPFG          +           G    + + G +LFL     K+ L  
Sbjct: 179 DCDFILTNPPFGTSESGALSDKD----------MGQFEVQTTKGQLLFLQ----KMVLSA 224

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT--YLW 408
             GG    V+    L    A      IR+WLL    + A+V LP + F    I     + 
Sbjct: 225 RRGGEICTVIDEGVLNTDTAAP----IRKWLLSKAKLLAVVRLPDETFRPNKINVRSSVL 280

Query: 409 ILSNRK------TEERRGKVQLINATDLWTSIRNEGKKRRIIN---DDQRRQILDIYVSR 459
            L           ++ +  V   +          +  +   ++   D   + IL    +R
Sbjct: 281 YLQRMTEEEEEIADDIKYPVAFCDIETFGMDGAGDIARNFDLDTLIDSVGKNILRTGRTR 340

Query: 460 ENGKFSRMLDYRTFGYRRIKVLR 482
            +GK   + D      R  K  R
Sbjct: 341 -SGKHWSVFDVAVSRIRDDKASR 362


>gi|291566463|dbj|BAI88735.1| type I restriction enzyme, modification chain [Arthrospira
           platensis NIES-39]
          Length = 200

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 17/196 (8%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +  G++      ++K A+ L G+ + +D+  V L    L+ +    E  +  + E+Y   
Sbjct: 9   KNNGASLGYEAELFKAADKLRGNMEPSDYKHVALGLIFLKHICDRFETRQRELAEEYPEG 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIF 115
              + +       A   F+       S   +   +       +     I   + + K + 
Sbjct: 69  VEDSDEY-----TAENVFWVPQAARWSHPQANAKQPTIGKLIDEAMLAIEKENSSLKGVL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   +     A +L ++    S I L         V+  +YE+ + +F     +  
Sbjct: 124 PKEYARPAL----NAVMLGELIDLISNIALGEAQDTARDVLGRVYEYFLGQFAGSEGKRG 179

Query: 175 EDFMTPRDVVHLATAL 190
            +F TPR VV +   +
Sbjct: 180 GEFYTPRSVVRVMVEM 195


>gi|225076445|ref|ZP_03719644.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens
           NRL30031/H210]
 gi|224952124|gb|EEG33333.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens
           NRL30031/H210]
          Length = 637

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 122/356 (34%), Gaps = 52/356 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  +   Y   +  +     +     +TPR +V L   L+                +++D
Sbjct: 304 EDYLGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELI----------DIKPTDSVFD 352

Query: 212 PTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGT GFL  AM+H+    D  +  +       HG EL+P    +    M++R      
Sbjct: 353 PCCGTAGFLIAAMHHMLQKTDKEAEKRNIRKNQLHGIELQPYMFTIATTNMILRG----- 407

Query: 269 RRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             D   N++Q   L ++      K  +  + NPP+ +  + + +  E             
Sbjct: 408 --DGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQGSKANPNLYEISFT--------- 456

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                              L       G+A +++  S +        E  I+  +L+   
Sbjct: 457 -----------------EHLLDSITADGKAIVIVPQSSM--TGKTKEEQAIKENILKKHT 497

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIIN 445
           +E ++ L  + F+       + + S     ++   V+ IN   D +   ++ G    +  
Sbjct: 498 LEGVITLNKNTFYGVGTNPCIAVFSTGIPHDKDKTVKFINFENDGFEVQKHIGLVETVSA 557

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            D+++ +LD++  R   +    ++                   I  +    ++ AD
Sbjct: 558 KDKKQHLLDVWFGRIQAESKFCVETTVEADDEWLHSFYYFNDEIPTEADFEKVIAD 613


>gi|295111478|emb|CBL28228.1| Type I restriction-modification system methyltransferase subunit
           [Synergistetes bacterium SGP1]
          Length = 825

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 155/485 (31%), Gaps = 66/485 (13%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             + S +G    ++ L S  +  + + +    +     T  +     L  ++ +N     
Sbjct: 244 RLTRSNVGPDAKKDKLLSEFSILNTSFRLNEVNDVLGKTPLKFYTKFLYDRVFRNI---- 299

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                  +  +   Y   +  +     +     +TPR +  L   L+             
Sbjct: 300 -KYQKTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCDLV----------DVQ 347

Query: 205 MIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           +   + DPTCGT GFL  AM+ +   +D  +  K       HG EL+    AV  A M++
Sbjct: 348 VNDVVLDPTCGTAGFLISAMHKMLSMSDSDAQRKDIKKKQLHGFELQSNMFAVAAANMIL 407

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           R        D + N++    L K+      K     L NPP+ +  + D           
Sbjct: 408 R-------HDGNSNLECTDFLKKNPAQVQMKGATIGLMNPPYSQGTKADP---------- 450

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                       S   + F+ HL + L      GGRAA+++  S +    A   E   + 
Sbjct: 451 ------------SQYELSFVEHLLDSL----TEGGRAAVIVPQSSMTGKSA--EEKVFKE 492

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +L+N  +E ++   T+ F+       + + +  +        + I+  +     R    
Sbjct: 493 SILKNHTLEGVITCNTETFYGVGTNPVIALFTAHEPHPEDKVCKFIDFRNDGFETRAHVG 552

Query: 440 K-RRIINDDQRRQILDIYVSRENGKFSRML--------DYRTFGYRRIKVLRPLRMSFIL 490
                   D+++ +LD++  R     S+          D     +       P    F  
Sbjct: 553 LVEGDSAKDKKQHLLDVWNGRIEAP-SKFCVKTTVEASDEWLHSFYYFNDEIPTDADFEK 611

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
                   E  +  +    L +         +   +      E   +     +   T++ 
Sbjct: 612 TIGDYLTFEFSMVMQNREYLFEDTKGRDDDELGDYVEIPSLEEKEWEAFSVDSLFPTIEP 671

Query: 551 KASKS 555
              K+
Sbjct: 672 TKGKT 676


>gi|19881220|gb|AAM00833.1|AF486547_2 HsdM [Campylobacter jejuni]
          Length = 348

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 125/383 (32%), Gaps = 59/383 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKAMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILV-----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            L              G+E  P ++A+ V  M++  + S      +   +       D+ 
Sbjct: 227 NLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK----KITDIT 282

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +++   L+NPPFG K        EKE              K +   +LFL H+   L+
Sbjct: 283 EQEKYEVILANPPFGGK--------EKEQIQENFP------IKSNATELLFLQHILRSLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRA 370
                 GR AI++    LF    
Sbjct: 329 ----NNGRCAIIVPEGVLFQNSN 347


>gi|323481372|gb|ADX80811.1| Type I restriction modification system protein HsdMI [Enterococcus
           faecalis 62]
          Length = 181

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L   + 
Sbjct: 1   MAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNR- 56

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474
             +   V  I+A+  +   +N    +  ++++  ++IL+ Y  R++  K++ +  +    
Sbjct: 57  --QNRDVLFIDASREFVKGKN----QNKLSEENIQKILENYAERKDVEKYAHLATFDEIK 110

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
                +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 111 ENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 158


>gi|255066319|ref|ZP_05318174.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256]
 gi|255049529|gb|EET44993.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256]
          Length = 637

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 113/318 (35%), Gaps = 52/318 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  +   Y   +  +     +     +TPR +V L   L+                +++D
Sbjct: 304 EDYLGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELI----------DIKPTDSVFD 352

Query: 212 PTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGT GFL  AM+H+    D  +  +       HG EL+P    +    M++R      
Sbjct: 353 PCCGTAGFLIAAMHHMLQKTDKEAEKRNIRKNQLHGIELQPYMFTIATTNMILRG----- 407

Query: 269 RRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             D   N++Q   L ++      K  +  + NPP+ +  + + +  E             
Sbjct: 408 --DGKSNLEQEDFLKQNPAQLQLKGCNIGMMNPPYSQGSKANPNLYEISFT--------- 456

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                              L       G+A +++  S +        E  I+  +L+   
Sbjct: 457 -----------------EHLLDSLTEDGKAIVIVPQSSM--TGKTKEEQSIKENILKKHT 497

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E ++ L  + F+       + + S     ++   V+ IN  +    ++        I+ 
Sbjct: 498 LEGVITLNKNTFYGVGTNPCIAVFSTGIPHDKDKTVKFINFENDGFEVQKHIGLVETISA 557

Query: 447 -DQRRQILDIYVSRENGK 463
            D+++ +LD++  R   +
Sbjct: 558 KDKKQHLLDVWFGRIQAE 575


>gi|317048486|ref|YP_004116134.1| N-6 DNA methylase [Pantoea sp. At-9b]
 gi|316950103|gb|ADU69578.1| N-6 DNA methylase [Pantoea sp. At-9b]
          Length = 632

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 132/348 (37%), Gaps = 58/348 (16%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           S   +L     LY +    +       +V     ++   Y   + R+     +     +T
Sbjct: 267 SRADKLTGESPLYNLIDKINTHAWPFISVYHDYDIIGQFYGEFL-RYTGGDKKALGIVLT 325

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR +  L + +     D+          T++DP CGTGGFL  AM+ +            
Sbjct: 326 PRHITDLFSRIANVQKDS----------TVFDPCCGTGGFLVSAMHQMFKKCITEDEKAR 375

Query: 240 LVPHG---QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           +  +G    E +P  +A+  + M++R    D + +L +       ++K++ + ++    +
Sbjct: 376 VKQYGLIGVEQQPNMYALAASNMILRG---DGKANLHQGSCFDDAITKEINS-RQPDIGM 431

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+ +K                    G GL       + F+ H+ + L +   GG   
Sbjct: 432 INPPYAQK--------------------GKGLH-----ELAFVEHMLDCLRV---GGIGI 463

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV  S  +          E +  LL    +EA++++P +LF      T + + +  K  
Sbjct: 464 AIVPMSCVIT-------PHETKHTLLSKHCLEAVMSMPDELFTPVGTITCIMVFTAHKPH 516

Query: 417 ERRG-KVQL-INATDLWTSIRNEGKKRRIINDDQRR-QILDIYVSREN 461
           E  G K        D +   + +G+       +  R + L  Y +RE+
Sbjct: 517 EAEGRKTWFGYWKDDGFEKTKQQGRTDVSGRWENIRDKWLHSYKNRED 564


>gi|314933992|ref|ZP_07841357.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87]
 gi|313654142|gb|EFS17899.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87]
          Length = 635

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 122/345 (35%), Gaps = 47/345 (13%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N      + I    DN   I  D   +     L    L Y   K    ++ +       +
Sbjct: 247 NKSLMPHAKIGELKDNFTFIQNDLTLNRVRDDLGMTPLKYFTIKLNEKLKKNIKHSDMDI 306

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N Y   + ++G          +TPR + +L   L+   ++            + DP C
Sbjct: 307 LGNFYGEFV-KYGGSDGNSLGIVLTPRHITNLMCELIDINENDY----------VLDPCC 355

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G+GGFL  AMN + +  +       +     HG EL+ +   +    M++R         
Sbjct: 356 GSGGFLIAAMNKMLNQTTDESKQAQIKQKQLHGIELQQKLFTIATTNMILRG-----DGK 410

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +        + KD +T  +    L NPP+ +   K+                       
Sbjct: 411 SNLKRDDIFHVGKDFYTD-KITKALINPPYSQAKTKNL---------------------- 447

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               +  +  +   L L  +G   AAIV  S+ +        +   +R +L+N+ +E ++
Sbjct: 448 --SHLSEISFINETLSLMKSGAKLAAIVPQSTMI---GKTKNDKNYKREILDNNSLETVI 502

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            L  D F+   +   + + +    ++ + +V  +N +D    +R 
Sbjct: 503 TLNKDTFYGVGVNPCIAVFTAGIPQDDKKRVNFVNFSDDGYVVRK 547


>gi|291560647|emb|CBL39447.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 410

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 129/403 (32%), Gaps = 67/403 (16%)

Query: 159 YEHLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           Y  +   F  E  +        TP  +  +   ++ D D+              D   GT
Sbjct: 44  YTEIRDIFQEEQGDRKNLKQDFTPDCICQIVAEIMKDGDN-------------IDMCSGT 90

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G     A++  A+     KI         E    T    +    +  +     R      
Sbjct: 91  G-----ALSKWANKTRGIKINEY------EYSERTIPFALLDACVNGMTGMISRADCLRS 139

Query: 277 QQGSTLSKDL------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           Q   + + +                 ++   + NPP+  K+    D      K       
Sbjct: 140 QIFESYALEQCGEISIPRQVERQNPDQYKNIIMNPPYSMKFPDTDDYEILGWK------- 192

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  S     F++     L+      GR   VL    LF    G+ E +IRRWL+EN
Sbjct: 193 ----IPKSKADFGFILRGVQHLK----EDGRQIAVLPHGILFR---GAQEGKIRRWLIEN 241

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            +I A++ +P  LF  T+I  +L ++     E     V  I+A+  +         +  +
Sbjct: 242 HMISAVIGVPDKLFLNTSIPVFLLVI-----EHNSKDVLFIDASKEFIK----KAAQNDM 292

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +    ++++ +++R+   K+S +  Y         +  P R     ++  L  +   + 
Sbjct: 293 EEKYIEKVVNTFLNRKEVEKYSYIASYEEIEENDFNLNIP-RYVDTFEEEPLPDVRQILK 351

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
             K     ++     L  M+  +         V+      + K
Sbjct: 352 DLKQIDEEETKIKADLYSMLNDLTGSKEDMEVVEMHKNILKPK 394


>gi|307067538|ref|YP_003876504.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|306409075|gb|ADM84502.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
          Length = 263

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 103/291 (35%), Gaps = 35/291 (12%)

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           + HG + +     +    M++  +E       +  I    +LS+D     ++   L+NPP
Sbjct: 1   MFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPP 53

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F    + +  + +                K     +LFL      L+     GGRAA+++
Sbjct: 54  FKGSLDYNSTSND-----------LLATVKTKKTELLFLSLFLRTLKP----GGRAAVIV 98

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERR 419
               LF   +      IR+ ++EN  ++A++++P+ +F     ++T + I +        
Sbjct: 99  PDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAILIFTK----TGN 152

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFSRMLDYRTF 473
           G    +   D+     +   KR+ I+D+    I++ +        R+    S  +     
Sbjct: 153 GGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQRTDQSFFVPVAEI 212

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +          +K      E  +             L  L+ +++
Sbjct: 213 KENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLAELEKLLK 263


>gi|251793527|ref|YP_003008256.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700]
 gi|247534923|gb|ACS98169.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700]
          Length = 637

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 121/356 (33%), Gaps = 52/356 (14%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  +   Y   +  +     +     +TPR +V L   L+                +++D
Sbjct: 304 EDYLGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELI----------DIKPTDSVFD 352

Query: 212 PTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGT GFL  AM+H+    D     +       HG EL+P    +    M++R      
Sbjct: 353 PCCGTAGFLIAAMHHMLQKTDKEDEKRNIRKNQLHGIELQPYMFTIATTNMILRG----- 407

Query: 269 RRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             D   N++Q   L ++      K  +  + NPP+ +  + + +  E             
Sbjct: 408 --DGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQGSKANPNLYEISFT--------- 456

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                              L       G+A +++  S +        E  I+  +L+   
Sbjct: 457 -----------------EHLLDSLTEDGKAIVIVPQSSM--TGKTKEEQSIKENILKKHT 497

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIIN 445
           +E ++ L  + F+       + + +     ++   V+ IN   D +   ++ G    +  
Sbjct: 498 LEGVITLNKNTFYGVGTNPCIAVFTTGIPHDKDKIVKFINFENDGFEVQKHIGLVETVSA 557

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            D+++ +LD++  R   +    ++                   I  +    ++ AD
Sbjct: 558 KDKKQHLLDVWFGRIQAESKFCVETTVEADDEWLHSFYYFNDEIPTEADFEKVIAD 613


>gi|194246615|ref|YP_002004254.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Phytoplasma mali]
 gi|193806972|emb|CAP18407.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Phytoplasma mali]
          Length = 925

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 97/501 (19%), Positives = 182/501 (36%), Gaps = 90/501 (17%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPD 148
           L          S +  F  N    F+    S    +  ++ + +L KI +    ++L   
Sbjct: 193 LWENFKNTPDNSLLEFFKKNIIPEFQKKYSSDVFIQTEIKNSSVLRKIIQLLDPLKLI-- 250

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +   +  + +E+ I  +     +     ++ TPR +V     ++          +P + 
Sbjct: 251 DLETDIKGDAFEYFISVYSGGHGQKTDLGEYFTPRHIVKNTVKIV----------NPKIG 300

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEPETHAVCVAGMLI 261
            T+ DP CGTGGFL +   H+    S       K        GQE+   T  +    M++
Sbjct: 301 ETILDPFCGTGGFLIEVFKHIHQQISLDDKTLLKKLQKETIFGQEI-TSTSRLAKMNMIL 359

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D   NI Q  +L   +   +++   ++N PFG +                 
Sbjct: 360 AG-------DGHNNIIQCDSLK--VTNKQKYDLIITNIPFGNQ----------------- 393

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                          L++    N L+     GGR AI++    L N +       +R+ L
Sbjct: 394 ------------KEQLYIETCLNFLK----KGGRMAIIIPDGILSNQKN----LFLRKKL 433

Query: 382 LENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEG 438
             N  I+ I+++P  +F   T++ T + I +++K  +     K+  I  +D ++  +   
Sbjct: 434 YNNFDIK-IISMPMGMFEPYTSVKTSILIANSKKENQTNSFIKIYKIE-SDGFSLDKKRK 491

Query: 439 KKRRIINDDQRRQI--LDIYVS--RENGKFS-----RMLDYRTFGYRRIKVLRPLRMSF- 488
           K   I ND  R  +  L IY +   EN  +S      +       Y +IK+   + +   
Sbjct: 492 KLLTIQNDWDRYHLEMLKIYTTIPTENNNYSFLNQKEIFVTLNNDYPKIKLSDVVNIQKG 551

Query: 489 -ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
               K   A +E  I + K+S + +      L   + +I P        K ++K  +  +
Sbjct: 552 NNPPKDEKAYIEGKIPFFKVSDIAKFHIKLNLSESVHKINP------AYKTTLKLFKKNS 605

Query: 548 LKVKASKSFIVAFINAFGRKD 568
           L +  +         A   KD
Sbjct: 606 LLIPTTGESCKLNHRALISKD 626


>gi|306823032|ref|ZP_07456408.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC
           27679]
 gi|309801128|ref|ZP_07695257.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022]
 gi|304553664|gb|EFM41575.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC
           27679]
 gi|308222017|gb|EFO78300.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022]
          Length = 640

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 121/378 (32%), Gaps = 55/378 (14%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            T  +  +   Y   +  +     +     +TPR +  L   +L    +           
Sbjct: 302 QTTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCEILNIGPE----------D 350

Query: 208 TLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            + DP CGT GFL  AM+ +   +   S  +       +G E++     +  + M++R+ 
Sbjct: 351 RVLDPCCGTAGFLISAMHRMLSLSSSESQRRSIKKKRLYGFEIQSNMFVIAASNMILRKD 410

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +   +      Q  S +  D  T       L NPP+ +  + D                
Sbjct: 411 GNSNLQCCDFLKQNPSQVQLDGAT-----VGLMNPPYSQGSKDDP--------------- 450

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  S   + F+ HL + L      G RAA+++  S +        E   +  +L+ 
Sbjct: 451 -------SQYELSFVEHLLDSL----TEGARAAVIVPQSSM--TGKTKDEKTFKESILKK 497

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK-RRI 443
             +E I+    + F+       + + +  +  E     + I+  +    +R         
Sbjct: 498 HTLEGIITCNPNTFYGVGTNPVIAVFTAHEPHEPEHVAKFIDFRNDGYEVRPHIGLVEGD 557

Query: 444 INDDQRRQILDIYVSREN--GKFS-----RMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
              D+++ +LD++  R     KF      R  D     +       P    F        
Sbjct: 558 SAKDKKQHLLDVWNGRVEAPSKFCVQSTVRSGDEWLHSFYYFNDEIPTDADFEKSIGDYL 617

Query: 497 RLEADITWRKLSPLHQSF 514
             E  +  +    L +  
Sbjct: 618 TFEFSMIMQGREYLFKEA 635


>gi|1771599|emb|CAA64185.1| hypothetical protein [Staphylococcus phage phi-42]
          Length = 639

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 50/355 (14%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +    +   N      + I    DN   I  D   +     L    L Y   K    ++ 
Sbjct: 242 FDAIDIYLRNKSLMPHAKIGELKDNFTFIQNDLTLNRVREDLGMTPLKYFTIKLNEKLKK 301

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +       ++ N Y   + ++G          +TPR + +L   L+    +         
Sbjct: 302 NIKHSDMDILGNFYGEFV-KYGGNDGNSLGIVLTPRHITNLMCELIDINKNDY------- 353

Query: 206 IRTLYDPTCGTGGFLTDAMN---HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + DP CG+GGFL  AMN   H  +             HG EL+ +   +    M++R
Sbjct: 354 ---VLDPCCGSGGFLIAAMNKMLHETEDEEKKTHIKQEQLHGIELQQKLFTIATTNMILR 410

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   D   N+++      +      +    L NPP+ +   K+   +         
Sbjct: 411 G-------DGKSNLKRDDIFHIEKELYANKITKALINPPYSQAKTKNLSHLS-------- 455

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                            +  +   L L   G   AAIV  S+ +   +  +     +R +
Sbjct: 456 ----------------EISFINETLSLMKIGAKLAAIVPQSTMIGKTKNDN----YKRDI 495

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           LEN  ++ ++ L  D F+   +   + + +    ++ + +V  IN +D    +R 
Sbjct: 496 LENHSLDTVITLNKDTFYGVGVNPCIAVFTAGIPQDEKKRVNFINFSDDGYIVRK 550


>gi|301062619|ref|ZP_07203251.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300443299|gb|EFK07432.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 421

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 131/424 (30%), Gaps = 98/424 (23%)

Query: 1   MTEFTGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           M +   S  S  + +W        A  L    +       I     +RR++      ++ 
Sbjct: 1   MLQNNPSLKSKIDQLWNKFWAGGIANPLT-AIEQ------ITYLLFMRRMDDLDLKQQAD 53

Query: 55  VREKYLAFG--------------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
                  F                   + + F    G   ++      +     + +N +
Sbjct: 54  AEFTGEKFASRFAGTWVPPEHRNRPKEEQQPFEIEKGSLRWSKFTRMAAEEMLPHVQNKV 113

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPD-----R 153
             ++   +    +  +     + +  + K  LL +  K    I  E+  D+         
Sbjct: 114 FPFLKDINGRESSFTDH--MKNAVFIISKPSLLVEAVKTIDEIFKEIEKDSREKGQAFQD 171

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+    +        F TPR ++ L   L+           P +   + DP 
Sbjct: 172 IQGDVYEYLLSEIATAG--KNGQFRTPRHIIKLIAELV----------RPKLGHRIADPA 219

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------------------VPHGQEL 247
           CGTGGFL  A  ++    + +K    L                             G + 
Sbjct: 220 CGTGGFLLGAYQYIVTQLALNKGVKSLKPDEDGFKRTSVSAVLTENAKNILNETLWGYDF 279

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  +++  ++         +I     LSK      ++   ++NPPF      
Sbjct: 280 DSTMVRLGLMNLMMHGIDD-------PHISDKDALSKTYNEPNQYDVVMANPPFTGS--- 329

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
               ++K   N  L        + +   +LF+ ++   L      GG A I++    LF 
Sbjct: 330 ----IDKGDINENLN------LRTTKTELLFIENIYRMLR----KGGTAGIIVPQGVLFG 375

Query: 368 GRAG 371
              G
Sbjct: 376 SAKG 379


>gi|308272577|emb|CBX29181.1| Probable type I restriction enzyme BthVORF4518P M protein
           [uncultured Desulfobacterium sp.]
          Length = 272

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 103/288 (35%), Gaps = 21/288 (7%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M +  +                T S    TG R  Y L+NPPFGKK        + E 
Sbjct: 1   MNMFLHNIGDIDSETFIL-----PTDSLVADTGLRVDYVLTNPPFGKKSSMTFTNEKGEQ 55

Query: 317 KNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +  +L           S+  + F+ H+   L+     GG+AA+VL  + LF G AG    
Sbjct: 56  EKEDLTYNRQDFWATTSNKQLNFVQHIRTMLKT----GGKAAVVLPDNVLFEGGAGE--- 108

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLE   +  I+ LPT +F+   +   +    N K   +      +   D  T+IR
Sbjct: 109 TVRKKLLETTDLHTILRLPTGIFYAQGVKANVLFFDN-KPASKDPWTSEVWIYDYRTNIR 167

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           +  KK   +  +   + ++ Y +    K             R +      +    DKT L
Sbjct: 168 HTLKKSP-LKLEDLAEFIEYYNAGNRHKRKETWHEEINPEGRWRKFTYDEI-VNRDKTSL 225

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
                DITW K   L     L     +   I     A     + I  N
Sbjct: 226 -----DITWLKDKSLADLDNLPDPDLLANDIIENLEAAVESFKEIMLN 268


>gi|330468262|ref|YP_004406005.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
 gi|328811233|gb|AEB45405.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
          Length = 653

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 92/271 (33%), Gaps = 48/271 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            ++ L +RF +        F TP D+  L   L                 T+ DP  G+G
Sbjct: 128 AFDELWQRFSAPGP--GRSFATPDDLADLMVGLAG-----------VDGCTVLDPAAGSG 174

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+                  +GQEL+     +    + +R +  D          
Sbjct: 175 AVLRAAVR-----------AGCTTAYGQELDEGLARLAELWLALREVPGDMNV------- 216

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D + G  +   + +PPFG     D++            R+  G    ++  + 
Sbjct: 217 -GDSLRADAYAGHTYDTVVCHPPFGATNWGDEEL-------SHDPRWIVGTTPRTEPELA 268

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    L      GG A +++  +             IR  LL    + A++ALP   
Sbjct: 269 WVQHALAHLRA----GGHAVLLMPPTVASRRAG----RRIRAELLRRGALRAVIALPPGA 320

Query: 398 FFRTNIATYLWILSNRKTE-ERRGKVQLINA 427
                +  +LW+L     +     +  L++A
Sbjct: 321 AAPHGVPLHLWVLRRPAPDTPPPARTLLVDA 351


>gi|218960818|ref|YP_001740593.1| Restriction modification system DNA specificity domain:N-6 DNA
           methylase:Type I restriction-modification system, M
           subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167729475|emb|CAO80386.1| Restriction modification system DNA specificity domain:N-6 DNA
           methylase:Type I restriction-modification system, M
           subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 837

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 128/388 (32%), Gaps = 83/388 (21%)

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
            A Y++    +  LS  G      +  + I   + +   +F D  F +          L 
Sbjct: 61  YAKYAWNRLFDQKLSGEGRVMLYQDALTKI-PNNASIPTLFRDI-FKNAFLPYRDPETLK 118

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
              K                + + +E+L+   GS+    A  F TPR ++     L+   
Sbjct: 119 LFLKCIDEFTYEHSEK----LGDAFEYLLAVLGSQG--DAGQFRTPRHIIDFMVELI--- 169

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPILVPH------- 243
                   P    ++ DP CGT GFL  A  H+    S +      P     H       
Sbjct: 170 -------DPQKEDSILDPACGTAGFLISAYKHIIKTNSSNYDKVNDPHTFAMHNTPLDEL 222

Query: 244 --------------------------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                                     G ++  E   + +  M +           +  I 
Sbjct: 223 VIQNGKKYTGDLLTPDQRAFLHKNIKGYDIAFEMVRLSLVNMYLHGFN-------TPQIF 275

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +  TL+      +  +  L+NPPF       K  +   HK            +     +L
Sbjct: 276 EYDTLTSTERWNEYANVILANPPF----MTPKGGIRPHHKF---------TIQAKRSEVL 322

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ ++   L       GRA I++    +F  ++G+   ++R+ L+E + +  +++LP  +
Sbjct: 323 FVDYMLEHL----TNNGRAGIIVPEGIIF--QSGNAYKQLRKLLVEENYLVGVISLPAGV 376

Query: 398 F-FRTNIATYLWILSNRKTEERRGKVQL 424
           F   + + T +  +      ++  K+  
Sbjct: 377 FNPYSGVKTSILWIDKA-LAKKTDKIIF 403


>gi|323441376|gb|EGA99035.1| hypothetical protein SAO46_2663 [Staphylococcus aureus O46]
          Length = 630

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 122/365 (33%), Gaps = 58/365 (15%)

Query: 76  AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
            G   YN  +  L          N         ++   I  D   +   ++L    L Y 
Sbjct: 232 DGDKIYNAVQMYLKQNADIRPAKN-----GEILESFMFIKNDLKLNRIHSQLNMTPLKYF 286

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
             K  +    +       ++ + Y   + ++G          +TPR + +L   L+    
Sbjct: 287 SVKLKNKFVHN----DMDILGSFYGEFV-KYGGNDGNALGIVLTPRHITNLMCELI---- 337

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETH 252
                 S      + DP CG+GGFL  AMN +   AD     K       HG EL     
Sbjct: 338 ------SINHTDFVLDPCCGSGGFLVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLF 391

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDA 311
                 M++R        D   N+++      D  +   + +  L NPP+ +   K+   
Sbjct: 392 TTATTNMILRG-------DGKSNLRRDDVFHVDKEYYKDKINKILLNPPYSQAKTKNL-- 442

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                                   +  +  +   LE    GG  AAI+  S+ +      
Sbjct: 443 ----------------------SHLSEISFIKESLEYMKTGGKLAAIIPQSTMI---GKT 477

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             +   +R +LE   +E ++ L  D F+   +   + I +    ++ + +V  +N TD  
Sbjct: 478 KNDKNYKREILEKHSLETVITLNKDTFYGVGVNPCIAIFTAGIPQDEKKRVNFVNFTDDG 537

Query: 432 TSIRN 436
             +R 
Sbjct: 538 YVVRK 542


>gi|316985077|gb|EFV64030.1| N-6 DNA Methylase family protein [Neisseria meningitidis H44/76]
          Length = 157

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 23/143 (16%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+      G+ AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR------------GKVQLINATDLWTSIR 435
           + I+ LP +LF+ T I   + ++     +  +            G V +I+A+  +    
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFIKDG 130

Query: 436 NEGKKRRIINDDQRRQILDIYVS 458
           N+ +    + +    +I+D + +
Sbjct: 131 NKNR----LREQDIHKIIDTFTN 149


>gi|187927116|ref|YP_001897603.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|309780179|ref|ZP_07674930.1| type I restriction-modification system methylation subunit
           [Ralstonia sp. 5_7_47FAA]
 gi|187724006|gb|ACD25171.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|308920882|gb|EFP66528.1| type I restriction-modification system methylation subunit
           [Ralstonia sp. 5_7_47FAA]
          Length = 710

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 118/353 (33%), Gaps = 42/353 (11%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPD- 152
           +  N  +S +          F   +  ++  + ++    + +  +    ++L+  +  + 
Sbjct: 234 DINNRTDSALRRHGKREFHPFVKIEPPTNPDSHVKYKAAIVRTIQQL--LDLNIKSAMNS 291

Query: 153 --RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+   YE  +R      ++     +TPR +   A   +                 ++
Sbjct: 292 GTDVLGKFYEVFLRY--GNGAKEIGIVLTPRHITRFAVDAV----------GVSPSDLVF 339

Query: 211 DPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP CGTGGFL  A +HV     G+  +        G E E    A+ +  M+ R    + 
Sbjct: 340 DPACGTGGFLVAAFDHVRAKTKGAPLERFKRFGLFGIEQESSVAALAIVNMIFRGDGKNN 399

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +     +  +  + D        Y  + P  G      ++ + +   N          
Sbjct: 400 IVEADCFNRFLTRSTNDGHA--TAQYVKAKPKLG------EEPITRVFMNPPFA------ 445

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             +          +   L+   +G    AIV  S     G AG+     RR LLE+  + 
Sbjct: 446 --LKKSDEHEWRFVETALKSMADGALLLAIVPMSVVSEGGSAGA----WRRPLLEHHSVV 499

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           A+V+LP +LF+   +     IL           V    A  +    R    KR
Sbjct: 500 AVVSLPEELFYPVAVQAVAIILRKGVPHRAEQPVL--WARVVNDGYRKSKGKR 550


>gi|323439267|gb|EGA96993.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 172

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSN 412
           G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   
Sbjct: 2   GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF-- 56

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           +K  ++   V  I+A++ +   +N    +  ++D Q  +I++ Y  +E   K+S     +
Sbjct: 57  KKCRQQDDNVLFIDASNNFEKGKN----QNHLSDTQVERIINTYKGKETIDKYSYSATLQ 112

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                   +  P  +    ++  +     + +     ++++ + Q     + +
Sbjct: 113 EIADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 165


>gi|307638192|gb|ADN80642.1| type I restriction-modification system DNA-methyl transferase
           subunit M [Helicobacter pylori 908]
 gi|325998379|gb|ADZ50587.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           2017]
          Length = 506

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 109/278 (39%), Gaps = 28/278 (10%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H+   L+      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF
Sbjct: 1   MLHIIKSLK----DTGKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIKGVIGLAPNLF 53

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I   + +L       R+G V +I+A+  +    N+ +    + D   ++++D + +
Sbjct: 54  YGTSIPACVIVLDKENAHARKG-VFMIDASKDFKKDGNKNR----LRDQDVQKMIDTFNA 108

Query: 459 -RENGKFSRMLDYRTFGYR--RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +E   +S+M+           + + R +     L+K   A + +     K      + +
Sbjct: 109 YKEIPYYSKMVSLEEISANDYNLNIPRYIASKRELEKDLFALINSPSYLPKNEIKAYAPY 168

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK-----------ASKSFIVAFINAF 564
             + K +   ++     E +     +    K L  +            S    +     F
Sbjct: 169 FQVFKELKNTLFKKSDKEGYYALKTECENIKELITQSLEYQTFHASVLSAFESLELFTTF 228

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
              +P  +P T +  E +    L E+E +  L+    Y
Sbjct: 229 NDLEPGFNPKTLI--ESVCQKVLKEFEKIGILDKYGVY 264


>gi|269929053|ref|YP_003321374.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
 gi|269788410|gb|ACZ40552.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
          Length = 752

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 107/341 (31%), Gaps = 65/341 (19%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           +++      + +   +     +  +YE   R            + TPR +  +   L   
Sbjct: 228 WRVLSTLEKLNVATSSFAHDYLGQLYETFFRY---TGGNTIGQYFTPRHIARMMADLC-- 282

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----LVPHGQELEP 249
                          + DP CGTGGFL  AM    D  S      I        G E EP
Sbjct: 283 --------ESTPSDVVIDPACGTGGFLIAAMQRAYDQSSLRYEDAIELVREKLIGYESEP 334

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+ VA ML+R        D    I++    +   +        L NPPF  K     
Sbjct: 335 VTAALAVANMLLRG-------DGKTGIRKEDCFTATDYPVNACDIALMNPPFPHK----- 382

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                   +    RF              +      L L     GR A++L +S      
Sbjct: 383 ------KTDVPPERF--------------VERALEALRLR----GRIAVILPTSLTVKKE 418

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLI--- 425
                   R+ +L ++ +  +V LP +LF    +  T + +L      + R +   +   
Sbjct: 419 NAG----WRKQILTHNTLLGVVQLPDELFQPYASATTTVVLLEKGIPHDARRETAFVRLH 474

Query: 426 -NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            +   L   IR      R    D    I++    R    FS
Sbjct: 475 YDGLTLKKGIRVPRSDGRNQVPDTVDAIVN---KRVIPGFS 512


>gi|260914376|ref|ZP_05920845.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631477|gb|EEX49659.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 667

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 98/538 (18%), Positives = 177/538 (32%), Gaps = 108/538 (20%)

Query: 38  FTLLRRLECALEPTRSAVREK--YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           F   RR   ++       +E   +         +     +     +  S    +  G+ +
Sbjct: 175 FLAFRRCHESIHLYDGFNKENAFFEFLKIIFCKIRDERNIPKPLEFYVS---STEKGNLD 231

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            +N  +  I +     K  F     ++   +L    L     +  S ++ +     D  +
Sbjct: 232 GQNACKERINNIFAGVKRQFSQIFEANDEIKLSSRSL----VEIVSELQGYSFLATDVDL 287

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
               YE ++    S +      F TPR+V+H+A  ++          +P +   + DP C
Sbjct: 288 KGRAYEEIVG---SNLKGDRGQFFTPRNVMHMAVKMI----------NPKLDEKILDPAC 334

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPI------------------------LVPHGQELEPE 250
           GTGGFL  AMN V +         +                            G ++ PE
Sbjct: 335 GTGGFLVTAMNMVIEQLKQDWAKDLGADEHQWGDDEKKALQQRISEAAASSFFGFDIAPE 394

Query: 251 THAVCVAGMLI-----------------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                   M++                    ESD + +L+K +   ++  K       F 
Sbjct: 395 LVKATKMNMVMNNDGSGNILRNDSLLPPHLWESDFKENLAKALGISASQFKSHQDIGLFD 454

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF---------LMHLAN 344
             ++NPPFG K    ++ +  ++   E+G       K      L                
Sbjct: 455 VIITNPPFGSKITIQQEYMLNQY---EIGHGWENPKKKGGTEWLKKSVTSAAPPEQLFVE 511

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
           +        GR AIVL  + L       G   IR+WLL+   I A V L ++ F   T +
Sbjct: 512 RCLQLLKPAGRMAIVLPDNIL----GAPGLGYIRQWLLKEAKIIASVDLDSNTFQPHTGV 567

Query: 404 ATYLWILSNRKTEERR----GKVQLINATDLWTSI-----RNEGKKRRIINDDQRRQILD 454
            T + IL  +   E++    GK+Q     +++ ++      ++      + D+   +IL 
Sbjct: 568 QTSILILQKKTEAEKKADLEGKMQP---YNIFMAVVDKVGHDKRGVNTYLRDENGDEILQ 624

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                E  + S            +   +  R   I D   LA  E    W+K   +  
Sbjct: 625 -----EVEESS----------ADVSGEKTKRFDKIPDDQTLAVPEVFARWKKEEGIEW 667


>gi|330997668|ref|ZP_08321513.1| N-6 DNA Methylase [Paraprevotella xylaniphila YIT 11841]
 gi|329570196|gb|EGG51936.1| N-6 DNA Methylase [Paraprevotella xylaniphila YIT 11841]
          Length = 667

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 116/362 (32%), Gaps = 57/362 (15%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               +Y + +    I L    +        ++  +  F          F TP  +V    
Sbjct: 289 DKHKIYTVVQYLQDINLSRTDL--DAKGVAFQSFMGEFF---RGDFGQFFTPNPIVEFIV 343

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---------- 238
             +    D            + D +CG+GGFL  A+  + D  +                
Sbjct: 344 NSINIDKD----------WKVLDTSCGSGGFLLYALKTIRDEANEIYGENAESSSWKDYW 393

Query: 239 ----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----LFTGK 290
                    G E+  +   V    M+I   +       +  ++   TL  +     F   
Sbjct: 394 HEFAEKHLFGIEINEQISRVAKMNMIIHD-DGHTNIITNDGLKNNKTLEIENRNLKFQDG 452

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--------RFGPGLPKISD--GSMLFLM 340
            F   ++NPPFG   + D+    KE++  E          R      K          ++
Sbjct: 453 TFDLIMTNPPFGSTIKADEVNYYKEYELFEKNLGITEIKDRIADDNNKKKWRASQSTEIL 512

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            L    +      G  AIV+    L N  +      +R WL+E   I A+V+LP   F  
Sbjct: 513 FLERCYKYLNEENGYLAIVVPDGILTNSTS----QYVRDWLVEKFKILAVVSLPQHTFSH 568

Query: 401 T--NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR-RQILDIYV 457
               + + +  L          KV           ++   +K + ++ +QR  ++LD+Y 
Sbjct: 569 VKAGVKSSILFLKKHP------KVVTQKFEQTLKDVKALVQKEKDLDKEQRTERMLDLYK 622

Query: 458 SR 459
            R
Sbjct: 623 ER 624


>gi|282864680|ref|ZP_06273735.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282560619|gb|EFB66166.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 663

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 40/276 (14%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + +E L++R+            TP  +  L   + L    A  ++      T++DP CG+
Sbjct: 130 HTFEFLLQRWLDAHVRQISA--TPARLATLMARIALRTRTAWGQK----TSTVFDPACGS 183

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L+ A           +    +  +G E++     +  A +     E D R  ++   
Sbjct: 184 GHLLSAAA---------GQASGGVELYGCEIDSALAELAEARLAFAGDERDVRTRITAV- 233

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +L  D +   R    L NPPF ++    ++            R+  GLP  ++  +
Sbjct: 234 ---DSLRDDPYPDLRADIALCNPPFNERDWGYEELATD-------PRWVHGLPPRTEPEL 283

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ HL  +L      GG A +VL  +             IR  LL + ++ A+VALP  
Sbjct: 284 AWVQHLLARLR----SGGTAVVVLPPAVASRRAG----RRIRGSLLRHGVLRAVVALPPG 335

Query: 397 LFFRTNIATYLWILSNRKTEERRG----KVQLINAT 428
                +++  LWIL     +ER G       L++A+
Sbjct: 336 CAQPHSVSLQLWILRAG--DERTGGSGDDALLVDAS 369


>gi|71275744|ref|ZP_00652029.1| N-6 DNA methylase [Xylella fastidiosa Dixon]
 gi|71163635|gb|EAO13352.1| N-6 DNA methylase [Xylella fastidiosa Dixon]
          Length = 188

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE-- 376
              RF   G      G   +L H    L       GRAA+VL +  +  G     E +  
Sbjct: 14  PFDRFRTAGGITSGKGDWAWLQHTLACLH----DHGRAAVVLDTGAVTRGSGSKNEDKER 69

Query: 377 -IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IR+W ++ DLI+ ++ LP +LF+ T  A  + +L+ RK   R+ K+ L+NA+  +    
Sbjct: 70  SIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVLNKRKPAARKDKIVLLNASRRY---- 125

Query: 436 NEGKKRRIINDDQRRQILDIYVSRE 460
            +GK +  + ++  R +  +Y+  E
Sbjct: 126 KKGKPKNYLPEEDVRSLAALYLKGE 150


>gi|237751945|ref|ZP_04582425.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430]
 gi|229376512|gb|EEO26603.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430]
          Length = 543

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 143/396 (36%), Gaps = 70/396 (17%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           ++ TP ++  L   +L                ++Y+P CG G +L     H  DC     
Sbjct: 109 EYATPAEINALVYGIL----------DIKSGESVYNPCCGLGSWLLHLKLHTKDCA---- 154

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G ++ P++  +  A  L+   ++                S+   T  +F   
Sbjct: 155 ------FYGADINPKSIRIAKALALLLEFKTCSLSIK-------DIFSEPFKTESKFDKV 201

Query: 296 LSNPPF----GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             +PP       K  ++           E+      L + S                   
Sbjct: 202 FCHPPLLSHLSLKAPRESKLAPYNKTALEIPFIDYSLMRFSK------------------ 243

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              +A  ++ +S L     G+GE  + ++LL+N L+E+++ LP ++F     +  + ++S
Sbjct: 244 ---KAVFIVRTSLL---SKGAGE-RLCKYLLKNGLLESVIELPDNIFPYKTESYSILVIS 296

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           N            INA D +       K   +       +ILD+Y S++N K+S  ++Y 
Sbjct: 297 NTNKR-----CLFINARDFYIKEGKYHKLINL------EEILDLYFSKQNTKYSNFVEYA 345

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                 + +      + I      + L+      ++   + S  +      ++   PYG+
Sbjct: 346 KIKGINLCLFESQNSTQIP---LGSLLDCIYRGARIVSKNDSDLISCYDFGIKDFNPYGF 402

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
           +++F   ++K+N  +   +K     I+  +     K
Sbjct: 403 SDNFCDSTLKANSKQLEVLKIKPYDILLSMRGVTPK 438


>gi|291545711|emb|CBL18819.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 267

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 109/291 (37%), Gaps = 35/291 (12%)

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           + HG +++     +    M+   +E       +  I+   +LS       ++   L+NPP
Sbjct: 4   MFHGYDMDRTMLRIGAMNMMTHGIE-------NPYIEYRDSLSDQNADKDQYSLVLANPP 56

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F       K +++ E  +G+L +    + K     +LFL      +++    GGR A ++
Sbjct: 57  F-------KGSLDAESVSGDLLK----VCKTKKTELLFLALFLRIMKI----GGRCACIV 101

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERR 419
               LF   +      IR+ ++EN  +EA++++P+ +F     ++T + I +  +     
Sbjct: 102 PDGVLF--GSSRAHKSIRKEIVENQRLEAVISMPSGVFKPYAGVSTAILIFTKTE----H 155

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKFSRMLDYRTF 473
           G    +   D+     +   KR  + ++    I++ + +      R+    S M+  +  
Sbjct: 156 GGTDQVWFYDMNADGFSLDDKRTPVTENDIPDIIERFKNLDKEAERKRTDQSFMVPKKDI 215

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +                     +   +   L     +D L+ ++ 
Sbjct: 216 VENDYDLSINKYKEIEYTPVEYPPTSEIMANIRELELEIGKEMDELERLLG 266


>gi|282932025|ref|ZP_06337486.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281303852|gb|EFA95993.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 204

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 23/193 (11%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AIVALP
Sbjct: 1   NYAWIEHIISKL----NPDGKAGFVLANGALSTTL--KEELAIRKNLLEADKIDAIVALP 54

Query: 395 TDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +F+ T I   LW +   K      +RRG+   I+A +L   +    +  R  +D+  +
Sbjct: 55  DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSDEDIK 111

Query: 451 QILDIYVSR---------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +I D Y +          +   F ++            VL P R   ++++         
Sbjct: 112 KIADTYHAYRGTNEQKYEDMAGFCKIAKLDEIAKNDY-VLTPGRYVGLVEQEDDGEPYEV 170

Query: 502 ITWRKLSPLHQSF 514
              R  + L + F
Sbjct: 171 KMARLTAELKKQF 183


>gi|304387518|ref|ZP_07369707.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|254674213|emb|CBA09997.1| type I restriction enzyme M protein [Neisseria meningitidis
           alpha275]
 gi|304338405|gb|EFM04526.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 157

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 23/140 (16%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+      G+ AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR------------GKVQLINATDLWTSIR 435
           + I+ LP +LF+ T I   + ++     +  +            G V +I+A+  +    
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFIKDG 130

Query: 436 NEGKKRRIINDDQRRQILDI 455
           N+ +    + +    +I+D 
Sbjct: 131 NKNR----LREQDIHKIIDT 146


>gi|291448530|ref|ZP_06587920.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291351477|gb|EFE78381.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 696

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 126/383 (32%), Gaps = 56/383 (14%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            +V+  S +      L  +   N R  + + +    ++ K  ++D  F  T         
Sbjct: 226 ERVSNGSVHGRFRTGLKEMFDANGRAAISTRVKGLFEDVKTEYKDV-FKPTDEITLSDRA 284

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  I    +  +L    V        Y+ L+    + +      + TPR  V+L   +L 
Sbjct: 285 LSFIVSELAPYDLIGTDV--DAKGIAYQELVG---TNLRGDRGQYFTPRGAVNLMVEIL- 338

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------ADCGS 232
                     P    T+ DPTCGTGGFL   + H+                       G 
Sbjct: 339 ---------DPKEDETVLDPTCGTGGFLQATLKHLHHTWKKEAGTLGFPDTEEERERYGD 389

Query: 233 HHKIPPILVPHGQELEPETHAVCVAG-MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
             K        G + +P          M + +   +     S    QG     +    + 
Sbjct: 390 KLKEFADEHLFGSDFDPFLVRATTMAIMTLAQTTGNVFHMDSLAFPQGHLSGVEAAKKRI 449

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP----GLPKISDG----SML 337
                     L+NPPFG       ++V    +NG    +G     G  + S      SM 
Sbjct: 450 PLDKPTVDVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTSVPSSMA 509

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                  +       GGR  IVL +  L N   G  +  IRR++L N  + A V LP + 
Sbjct: 510 PEQLFIQRAIEWVKPGGRIGIVLPNGILSN--PGPTDEAIRRYILRNCWVLASVELPVET 567

Query: 398 F---FRTNIATYLWILSNRKTEE 417
           F      NI T L  L  +  +E
Sbjct: 568 FVVDANVNILTTLLFLKRKTRQE 590


>gi|282933444|ref|ZP_06338821.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281302427|gb|EFA94652.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 173

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 23/183 (12%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  ++ H+ +KL    N  G+A  VL++  L        E  IR+ LLE D I+AIVALP
Sbjct: 1   NYAWIEHIISKL----NPDGKAGFVLANGALSTTL--KEELAIRKNLLEADKIDAIVALP 54

Query: 395 TDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +F+ T I   LW +   K      +RRG+   I+A +L   +    +  R  +++  +
Sbjct: 55  DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMV---DRTHREFSNEDIK 111

Query: 451 QILDIYVSR---------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +I D Y +          +   F ++            VL P R   + ++         
Sbjct: 112 KIADTYHAYRGTNKQKYEDVAGFCKIAKLDEIAKNDY-VLTPGRYVGLAEQEDDGEPYEV 170

Query: 502 ITW 504
             W
Sbjct: 171 KMW 173


>gi|239945070|ref|ZP_04697007.1| type I restriction-modification system, M subunit, putative
           [Streptomyces roseosporus NRRL 15998]
 gi|239991532|ref|ZP_04712196.1| type I restriction-modification system, M subunit, putative
           [Streptomyces roseosporus NRRL 11379]
          Length = 718

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 126/383 (32%), Gaps = 56/383 (14%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            +V+  S +      L  +   N R  + + +    ++ K  ++D  F  T         
Sbjct: 248 ERVSNGSVHGRFRTGLKEMFDANGRAAISTRVKGLFEDVKTEYKDV-FKPTDEITLSDRA 306

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  I    +  +L    V        Y+ L+    + +      + TPR  V+L   +L 
Sbjct: 307 LSFIVSELAPYDLIGTDV--DAKGIAYQELVG---TNLRGDRGQYFTPRGAVNLMVEIL- 360

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------ADCGS 232
                     P    T+ DPTCGTGGFL   + H+                       G 
Sbjct: 361 ---------DPKEDETVLDPTCGTGGFLQATLKHLHHTWKKEAGTLGFPDTEEERERYGD 411

Query: 233 HHKIPPILVPHGQELEPETHAVCVAG-MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
             K        G + +P          M + +   +     S    QG     +    + 
Sbjct: 412 KLKEFADEHLFGSDFDPFLVRATTMAIMTLAQTTGNVFHMDSLAFPQGHLSGVEAAKKRI 471

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP----GLPKISDG----SML 337
                     L+NPPFG       ++V    +NG    +G     G  + S      SM 
Sbjct: 472 PLDKPTVDVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTSVPSSMA 531

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                  +       GGR  IVL +  L N   G  +  IRR++L N  + A V LP + 
Sbjct: 532 PEQLFIQRAIEWVKPGGRIGIVLPNGILSN--PGPTDEAIRRYILRNCWVLASVELPVET 589

Query: 398 F---FRTNIATYLWILSNRKTEE 417
           F      NI T L  L  +  +E
Sbjct: 590 FVVDANVNILTTLLFLKRKTRQE 612


>gi|225573225|ref|ZP_03781980.1| hypothetical protein RUMHYD_01416 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039357|gb|EEG49603.1| hypothetical protein RUMHYD_01416 [Blautia hydrogenotrophica DSM
           10507]
          Length = 769

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 114/325 (35%), Gaps = 61/325 (18%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               +  +YE  IR      +       TPR +      L+                 + 
Sbjct: 273 DTDFLGLLYEAFIRY--GYDNNSLGIVFTPRHITKYCAELI----------DVSAKDKVI 320

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESD 267
           D  CG+GGFL  A + +    +   IP  ++    +G +  P   A+    M  R     
Sbjct: 321 DIACGSGGFLVAAFDRMLSSYTKMGIPFNVIRESLYGFDTNPTVWALAALNMFFRGDGKS 380

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              + S   +      KD     RF   L NPPF ++ E ++D +               
Sbjct: 381 HIENASCFEESSMNAVKD-----RFTKALLNPPFSQEEEPERDFI--------------- 420

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                + +M  L  L           G  A+V+ S    +       +  R   L+   +
Sbjct: 421 -----NTAMESLQAL-----------GVMAVVVKSGIFADDDN----ALWRNDFLKKHTL 460

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIIND 446
             +++LP+DLF+ T I T + +   ++ +    KV +     +W     + K KR   + 
Sbjct: 461 LGMISLPSDLFYPTAIDTTIMVAQAKRPQNLTDKVFM---AKIWNDGYKKLKGKRVETSG 517

Query: 447 DQRRQILDIYVSRENGK--FSRMLD 469
            Q  ++L+ +     G+   S+++ 
Sbjct: 518 SQLDEVLEEFRKFRAGEETSSKLVT 542


>gi|238898673|ref|YP_002924354.1| putative restriction endonuclease, N6_Mtase domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466432|gb|ACQ68206.1| putative restriction endonuclease, N6_Mtase domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 872

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 138/446 (30%), Gaps = 87/446 (19%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTV-------- 150
             +A    +         FS  I+++E         +I +    I L P+T+        
Sbjct: 222 KLLAEQEKHTANPLSSIWFSDFISKMEIEISTKKKKRIFEKDDQINLTPETINGVVSKLE 281

Query: 151 -------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     +   ++E  +    +   +    + TPR VV L  AL     DA   +  
Sbjct: 282 HLFLFGIDADLNGRLFETFLS--ATMRGKDLGQYFTPRSVVKLGVALAGLKIDA---QDI 336

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQEL--EP 249
                +YD  CGTGGFL D    +                 + +        G ++  +P
Sbjct: 337 SRSDRVYDGCCGTGGFLIDVFADMWSKIEKNPSLSKEKKEEYKQAIAYGHIFGADIGRDP 396

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---------------FHY 294
               +    M +         ++    ++      D                     F  
Sbjct: 397 NLSRIARLNMYLHGDGGSCIYNIDALDKELPVHKTDKPELLAEKEQMRNIYANKEGFFDV 456

Query: 295 CLSNPPFGKKWE--KDKDAVEKEHKNGELGRFGPGLPKIS----DGSMLFLMHLANKLEL 348
            ++NPPF KK+   K KD  + E  N E       L           +   +    +   
Sbjct: 457 IITNPPFAKKYSIGKSKDKEKNEISNAERILSQYSLKTYDAGKVKTELRSNLMFMERYYD 516

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT--NIATY 406
               GGR   V+    L     G   S  R WL E  +I A+V+LP D F R+   + T 
Sbjct: 517 VLKKGGRLLTVIDDGIL----NGKDYSWFRDWLREKFIINAVVSLPGDAFQRSMDRVKTS 572

Query: 407 LWILSNRKTEERRGKVQL--------IN----ATDLWTSIRNEGKKRRIINDDQRRQILD 454
           + IL+ + TE                I+    A  L     N+ K +     ++   I  
Sbjct: 573 ILILTKKHTENESQPSIFMYPCVFVGIDDPARARTLPIDAHNKKKAK-----EEIEDISH 627

Query: 455 IYVSRE----NGKFSRMLDYRTFGYR 476
            Y        N K+  ++D      R
Sbjct: 628 EYQKFTSGNGNEKY--IVDADRISDR 651


>gi|167767097|ref|ZP_02439150.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|167711072|gb|EDS21651.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|291559568|emb|CBL38368.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 573

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 124/302 (41%), Gaps = 52/302 (17%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V+LAT +L   +             + D  CG G FL +A+    +         
Sbjct: 119 TPESIVNLATRILNINN-----------EKVADFCCGVGNFLINAIEQDKNS-------- 159

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +G E+   TH   ++ + +  +      +             DL   K+F     +
Sbjct: 160 --KYYGIEIN--THYKEISNIRLNLISDYTEIEQGTVF--------DLNMDKKFDKIFCD 207

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            P+     K    + KE K  E     P + K+     LF+M++   L+      G+A +
Sbjct: 208 YPWN--ILKHNTGINKE-KLQEFESVVPEIKKVVKSDWLFIMNVERHLK----SNGKAVV 260

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + ++   +N   G  + +IR   L+  LIEA+++LP +L+  T I   + +LS       
Sbjct: 261 IATNGTTWN---GGIDKKIRERFLKMGLIEAVISLPANLYSTTAIPVSMIVLSKSNKM-- 315

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
              V++++A     S+ + G+++ +++++   QI+ +    E+ + S+ + +        
Sbjct: 316 ---VRMVDAR----SMASVGRRQNVLSNETIDQIVHMMT--EDTENSKCVTFEEIEKEDF 366

Query: 479 KV 480
            +
Sbjct: 367 AI 368


>gi|225164186|ref|ZP_03726462.1| N-6 DNA methylase [Opitutaceae bacterium TAV2]
 gi|224801195|gb|EEG19515.1| N-6 DNA methylase [Opitutaceae bacterium TAV2]
          Length = 651

 Score =  113 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 126/353 (35%), Gaps = 64/353 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V    YE ++    S +     +F TPR++  +A A+L           PG  + + DP
Sbjct: 287 DVKGRAYEEIVG---SNLRGDRGEFFTPRNICQMAIAML----------DPGEHQLILDP 333

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPP--------------------ILVPHGQELEPETH 252
            CGTGGFL  AMNHV +     ++                           G +  PE  
Sbjct: 334 CCGTGGFLITAMNHVIEKIRDAEVKKWKGKPERALEPIRARIQKFASKFIAGIDFNPELV 393

Query: 253 AVCVAGMLIR--RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                 M++         + +  +N    S+  +      +     +NPPFG K      
Sbjct: 394 KASKMNMVMNNDGAGGLFQANSLENPAVWSSDLRARNLMGKVDLLFTNPPFGSKIPITDP 453

Query: 311 AVEKEH---------KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           A+ +++         K  +      G  K     +LF+      L      GGR AIVL 
Sbjct: 454 AILEQYDLGHAWSYDKTSDRWMMQAGTVKSQPPEILFIERCVKFLR----SGGRCAIVLP 509

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT----- 415
              L +     G   +R W+L +  I A + L  D F    +I T + +L  +       
Sbjct: 510 DGILGS----PGLGYVREWILRHARILASIDLHPDTFQPLVSIQTSVLVLERKDQQLVAI 565

Query: 416 EERRGK-----VQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462
           E+  GK     V +  A  +    R N+   R     +  R+++   +  ENG
Sbjct: 566 EQAAGKLNDYCVFMAVANHIGHDKRGNKTYVRNKDGSELVRELVRSVLEYENG 618


>gi|304312534|ref|YP_003812132.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301798267|emb|CBL46489.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 693

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 138/451 (30%), Gaps = 79/451 (17%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           +     F+   +      G    R  +E          K IF      +    L    L 
Sbjct: 229 QAWKRRFWAGPKEQFEPQGRKAIRARIEELFTEVKKQYKNIFR----GNEEITLSDRALA 284

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           + I    +  +     V        Y+ L+      +      + TPR VV L   +L  
Sbjct: 285 F-IVSELAKYDFTRTDV--DAKGVAYQELVG---VNLRGDRGQYFTPRGVVKLVIEML-- 336

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------- 234
                    P    TL DPTCGTGGFL   + H+                          
Sbjct: 337 --------DPKEHETLLDPTCGTGGFLVATLGHMLKRFRQEQDTQAGNESTTEFLNVHER 388

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRR-----LESDPRRDLSKNIQQGSTLSKDLFT 288
            K       +G + +P         M++       + +    +           +K    
Sbjct: 389 LKEYAAANVYGADFDPFLIRAAQMNMVLAGDGRGHIYNINSLEFPLGHLADLDSAKKEIP 448

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHK-------NGELGRFGPGLPKISDGSMLFLMH 341
                   +NPPFG         + ++++       +GE G    G  K S      ++ 
Sbjct: 449 LGSLDIIATNPPFGSDIPITDKHILEQYELAHHWESDGEGGFRNTGSLKGSVA--PEILF 506

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-- 399
           +   ++    G GR  IVL    L N  A      IR W++    + A V LP + F   
Sbjct: 507 IERCIKWLKAGTGRMGIVLPDGVLGNPAA----EYIRWWIMRETQVLASVDLPVEAFIAE 562

Query: 400 -RTNIATYLWILSNRKTEERRGK---------VQLINATDLWTSIRNEGKKRRIINDDQR 449
              NI T L  L  +  EE+R +         V +  A  +    R     +R  + ++ 
Sbjct: 563 ANVNILTSLLFLRRKSEEEKRAEALGGIEEYPVFMAVADKVGFDRRGNKLYKRTPDGEEI 622

Query: 450 ----RQILDI-----YVSRENGKFSRMLDYR 471
               + I  I     +V R   +  ++ D  
Sbjct: 623 VEPKQHIERIRIGGRFVERTLTRSEKIEDND 653


>gi|270668424|ref|ZP_06222532.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270684879|ref|ZP_06222842.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270316193|gb|EFA28164.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270316685|gb|EFA28474.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 117

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           +   ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++
Sbjct: 32  YETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKY 83

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FY+++P R L ++  ++  +E Q   L+ E+
Sbjct: 84  FYRHKPLRSLAEVAQDILALEKQADGLISEI 114


>gi|222530437|ref|YP_002574319.1| N-6 DNA methylase [Caldicellulosiruptor bescii DSM 6725]
 gi|222457284|gb|ACM61546.1| N-6 DNA methylase [Caldicellulosiruptor bescii DSM 6725]
          Length = 881

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/586 (13%), Positives = 193/586 (32%), Gaps = 80/586 (13%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
            + + L      T     +K           E+    A             T+     + 
Sbjct: 210 FVFKFLSDIGVLTGDNGFDKVYQKKVEESPKEALKYYA-------------TVCRKAIKE 256

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                    +     IF + +  + + + E  G + +  K F         V     + +
Sbjct: 257 MFPPGEDGTTIINGTIFVNEEGEANLQQAELFGQVLESFKKFEDEYGSLKYVSKEFKTRL 316

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE  +R+      +    + TPR+VV     +                 ++ DP CG GG
Sbjct: 317 YETFLRQSAGI--KSLGQYFTPRNVVRAMVKM-------SKANMLPPGTSICDPFCGVGG 367

Query: 219 FLTDAMNHVADCG-----SHHKIPPILVPHGQEL------EPETHAVCVAGMLIRRLESD 267
           F+ + +    +        + KI P +   G +       +  T  +  A MLI   +  
Sbjct: 368 FILETILINENIWREFEPKNGKIDPQITLVGYDKGTDEKEDERTIILAKANMLIYLSDFL 427

Query: 268 PRRDLSKNIQQG--------------STLSKDLFTGKRFHYCLSNPPFGKKW-EKDKDAV 312
            +      +++               +  +  L   +++   L+NPP+        K+ +
Sbjct: 428 AKYHSKTYLEEFAKNAFNKVFKLLRTNLGTFGLREEEKYDLILTNPPYVTSGVSSIKEII 487

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           ++E+ +      G G         L +  +   L+     GG+A +++    L       
Sbjct: 488 KRENMDDYYTANGRG------TEALAIEWIIKSLK----KGGQALVIVPDGLLM------ 531

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER--RGKVQLINATDL 430
            +  +  ++ +  ++E I++LP   F+ T   TY+ IL  +  E +  +  V L   +++
Sbjct: 532 -QKNMLDYIKKKCIVEGIISLPPRTFYATPKKTYILILEKKYDENKIQQKPVFLYLVSEI 590

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRE------NGKFSRMLDYRTFGYRRIKVLRPL 484
             +  ++  K   I+ +   + + ++   +      +    +++++  F      ++   
Sbjct: 591 GETRDSKRFK---IDQNDLEEAVKLFNYFKVNLEPPDNLRCKVMNFEEFDKLTHWMVDKF 647

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
                  K G+   + +I+      + ++    +   +      + + + F ++++  N 
Sbjct: 648 WTEDEKQKLGIIEEKEEISAEDFYNILKNMRDYLDTQLRD---DFFFRKDFKEKALNINY 704

Query: 545 AKTLKVKA-SKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
           A     K      I      F   +P   PV        P   + +
Sbjct: 705 AVISLDKLFDFPAIKGVTEKFILNNPGNIPVYGGKKTETPIGYIKD 750


>gi|239988283|ref|ZP_04708947.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 11379]
          Length = 769

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 39/283 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R     +   +  +TP  +  L   L   P  A        +R++ DP  G
Sbjct: 209 GQAFEFLLGR--QLDANPRQYTLTPPQLAELMADLAEPPKGADRAARERPVRSVLDPAAG 266

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI------RRLESDPR 269
           TG  L               +      + QE +P   A+    + +      R  +   R
Sbjct: 267 TGALL-------------RAVGGPATLYAQEADPGLAALTALRLALAAEGPRRAADGTHR 313

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGL 328
                 ++ G TL  D F        L +PPF ++ W  D+ A +         R+  GL
Sbjct: 314 AAPGPVVRTGDTLRADAFPELAADTVLCHPPFNERNWGHDELAYD--------PRWEYGL 365

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  ++  + ++ H+  +L      GG A +++  +             IR  LL    + 
Sbjct: 366 PARTESELAWVQHVLARLR----DGGTAVLLMPPAAASRRSG----RRIRAGLLRRGALR 417

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEER-RGKVQLINATDL 430
           A++ALP        +  +LWIL   +   R    + L +  DL
Sbjct: 418 AVIALPAGAAPPYGVPLHLWILCKPEPGVRPAADLLLADTADL 460


>gi|289811268|ref|ZP_06541897.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 202

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 33/209 (15%)

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +   D    I+ G+TL  D     +     +NPPFG     +                  
Sbjct: 1   EGNLDHGGAIRLGNTLGSDGENLPQADIVATNPPFGSAAGTNITRT-------------- 46

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +   S+  + F+ H+   L      GGRAA+V+  + LF+        EIRR L++   
Sbjct: 47  FVHPTSNKQLCFMQHIIETLRP----GGRAAVVVPDNVLFDRVG----LEIRRDLMDKCH 98

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNR---KTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           +  I+ LPT +F+   + T +   +        + +     +   DL T++   G KR  
Sbjct: 99  LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPTQDKDCTDDVWVYDLRTNMPRFG-KRTP 157

Query: 444 INDDQRRQILDIYVS-------RENGKFS 465
             +   +    +Y         R  G++S
Sbjct: 158 FTEQYLQPFETVYGEDPHGLSPRAEGEWS 186


>gi|197119367|ref|YP_002139794.1| type I restriction/modification system DNA methyltransferase
           [Geobacter bemidjiensis Bem]
 gi|197088727|gb|ACH39998.1| type I restriction/modification system DNA methyltransferase,
           putative [Geobacter bemidjiensis Bem]
          Length = 707

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V    YE +IR    +     + F TP  VV     LL           P +   + DP
Sbjct: 186 DVKGVAYEEVIRNTFDKSDH--QQFFTPHQVVTFMVELL----------RPFLHGAIGDP 233

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CGT GFL + +    + GS           G E++     V    +L+        +  
Sbjct: 234 ACGTAGFLAEVVRTGVEVGS---------ISGFEIDERLSWVSGINLLLHGANKFEIKYF 284

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +     G   +K  F        ++NPPFG  +  +    +     G+L R         
Sbjct: 285 NCGGTLGPL-AKPYFN--TLDAIITNPPFGSDFNDEDALRDFSLGQGKLSRRRG------ 335

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LF+    + L+     GG   IV+    L    A     ++R+++L++  I AIV+
Sbjct: 336 ---ILFIERCWSLLK----DGGVVGIVIDEGVLNLPSAT----DVRQFILDHFDIMAIVS 384

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           LP   F    N+   +  L     + R  +V    A ++   
Sbjct: 385 LPETAFMPYANVNASILFLKKTTEQNRSTEVFFGKADNIGRK 426


>gi|270719677|ref|ZP_06223339.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270315394|gb|EFA27667.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 116

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           +   ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++
Sbjct: 31  YETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLNM--------ESVKIGYEISFNKY 82

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FY+++P R L ++  ++  +E Q   L+ E+
Sbjct: 83  FYRHKPLRSLAEVAQDILALEKQADGLISEI 113


>gi|168333674|ref|ZP_02691929.1| type I restriction-modification system, M subunit, putative
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 604

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 138/402 (34%), Gaps = 53/402 (13%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGI 143
           E  +S L   N  +        F   A   F        I  L K  L  +  K  F+ I
Sbjct: 38  ETIISKLTIANESDIPILLKEIFHSVAMNEF----LRLPIQYLSKTNLNNETIKKIFTDI 93

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                          Y   I    + +      + TP  +  L   LL            
Sbjct: 94  NHWKLNKTQ------YTEAINYVFTIIERTLPIYSTPSYINELLIKLLEP---------- 137

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +  T Y  T G    +  A  + A  G        L   GQE+  + +A+ V  + +  
Sbjct: 138 -IGGTFYSGTLGIASTMIMAYQYAAYLG------NTLEIXGQEINLQIYALAVIRLYVNG 190

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           + S        +I     L+  +     F Y   +PP   +W+  +  +       +L  
Sbjct: 191 ISS-------HHILASDMLTSPIINN--FDYIAIHPPANIEWKDKQSQIID---RPDLYS 238

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           FG      SD          +      N  G+A ++     LF       E ++R  ++ 
Sbjct: 239 FGFPQVTTSDWL------FLSLALKLLNKTGKAVVLTPVGSLFR---TGMEEKLRTRIIY 289

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            D IEAI+ LP  +   ++    + I +  K+ + +  +Q I+AT L+    ++ + +R 
Sbjct: 290 CDYIEAIIELPERIVTNSSTNFAIIIFNKNKSIKLKNSIQFIDATXLYE---SQKRAKRA 346

Query: 444 INDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPL 484
           ++ D   +I++IY S+ +    S ++         I   + +
Sbjct: 347 LSIDNINEIVNIYKSQTDIVNLSTIVSLTNLRSSNILPSKYV 388


>gi|239941823|ref|ZP_04693760.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
 gi|291445270|ref|ZP_06584660.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
 gi|291348217|gb|EFE75121.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
          Length = 769

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 39/283 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R     +   +  +TP  +  L   L   P  A        +R++ DP  G
Sbjct: 209 GQAFEFLLGR--QLDANPRQYTLTPPQLAELMADLAEPPKGADRAARERPVRSVLDPAAG 266

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI------RRLESDPR 269
           TG  L               +      + QE +P   A+    + +      R  +   R
Sbjct: 267 TGALL-------------RAVGGPATLYAQEADPGLAALTALRLALAAEGPRRAADGTHR 313

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGL 328
                 ++ G TL  D F        L +PPF ++ W  D+ A +         R+  GL
Sbjct: 314 AAPGPVVRTGDTLRADAFPELAADTVLCHPPFNERNWGHDELAYD--------PRWEYGL 365

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  ++  + ++ H+  +L      GG A +++  +             IR  LL    + 
Sbjct: 366 PARTESELAWVQHVLARLR----DGGTAVLLMPPAAASRRSG----RRIRAGLLRRGALR 417

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERR-GKVQLINATDL 430
           A++ALP        +  +LWIL   +   R    + L +  DL
Sbjct: 418 AVIALPAGAAPPYGVPLHLWILCKPEPGVRPVADLLLADTADL 460


>gi|34557787|ref|NP_907602.1| Type I restriction enzyme modification subunit [Wolinella
           succinogenes DSM 1740]
 gi|34483504|emb|CAE10502.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Wolinella
           succinogenes]
          Length = 560

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 129/383 (33%), Gaps = 58/383 (15%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             F    +   ++        R +    + KI K  +   L P+ +         E  I 
Sbjct: 50  KEFRPLYEYDLKELMGEELYTRADPNLNVGKILKTIAETPLTPEII---------EQFIH 100

Query: 165 RFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               + +        TP++V  L  +LL                 +Y+P  G G      
Sbjct: 101 TITIKRTLNKLYVYSTPQEVNELIISLL----------DIAPKDEVYNPCYGMGTLFLSL 150

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                      K    +   G+EL+     +     L+ R+       L  N      + 
Sbjct: 151 ----------SKRSKTIRLFGEELDG---RLAKIAKLMARVGGIQEMHLFVNDILKKPVF 197

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           K+    ++F   + NPPF          +E    +    R   G+   S   ++FL H  
Sbjct: 198 KNEKGFRQFDKIVCNPPFSAH-----LGIEYLKNDERFSR--YGILAKSSPELVFLTHAL 250

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+       R   ++ +  L   +    E ++R  ++E+ +IEAI+ LP ++F   + 
Sbjct: 251 MHLKQ------RGVFIVRNQTL---QKSFLEEKLRERMVEDRVIEAIIELPKNIFPHQSH 301

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + +L           +  I+AT      + +GK  R+I      +IL +Y  +   +
Sbjct: 302 DFSILVL-----AAHSDSILHIDATSERF-WQKDGKYNRLIG---IEEILALYRQKRESE 352

Query: 464 FSRMLDYRTFGYRRIKVLRPLRM 486
           +S++          ++    LR 
Sbjct: 353 YSKLTPIEEIDIHDLRAQNYLRF 375


>gi|55820899|ref|YP_139341.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus LMG 18311]
 gi|55736884|gb|AAV60526.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus LMG 18311]
          Length = 210

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 16/209 (7%)

Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           + +  RF   G+   +     FL H     +      GR AI L    LF G A   +  
Sbjct: 11  DIDDPRFREYGIAPKTKAEDSFLSHCLYHTK----ESGRVAITLPHGVLFRGAA---KGR 63

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           I + L++   IE+++  P  LF  T I   + IL   +       +  ++A+  +  ++N
Sbjct: 64  ISKTLIDKHQIESVIGFPDKLFLNTGIPVCVLILKKNRANS---DILFVDASQGFEKMKN 120

Query: 437 EGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
               ++ +  +   +I +  + R+   K+S +            +  P  +    ++  +
Sbjct: 121 ----QKQLRPEDIYKITETVIHRKAVDKYSHLATLEEVIENDYNLNIPRYVDTFEEEEPI 176

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              +      ++          +     +
Sbjct: 177 DLADIQGQIDEVDAEIAKANQTLANHFKE 205


>gi|21233564|ref|NP_639481.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770530|ref|YP_245292.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21115424|gb|AAM43363.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575862|gb|AAY51272.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 487

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/497 (15%), Positives = 158/497 (31%), Gaps = 77/497 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L          V EK      S +    F  +        S  +++        
Sbjct: 6   LIFIKLLSDR------EVHEKNPEMAESGV----FQVIEPARNVKFSVAAINAAEEAGID 55

Query: 98  NNLESYIASFSDNAKAIFEDFD----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N +        ++ +   +  +    FS          L   I +     +L+   +   
Sbjct: 56  NPIAVRFDELRESLELQIKQQNKKRIFSENEKLALSKDLTKDIVRRLESADLY--GLDAD 113

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +   ++E  +    +   +    + TPR VV LA A+     D            + D  
Sbjct: 114 INGRLFETFL--NATLRGKSLGQYFTPRSVVKLAVAM----SDLQVGIKHQGCDVVIDGC 167

Query: 214 CGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQE--LEPETHAVCVAGM 259
           CG+GGFL +A+  +            A              +G +   +P    +    M
Sbjct: 168 CGSGGFLIEALAAMWKKVESSPKLSQAAKNELKNDIATKCIYGIDSAKDPALARIARMNM 227

Query: 260 LIRRLESDPRRDLSKNI----QQGSTLSKDLFTGKRF------------HYCLSNPPFGK 303
            +          L        ++ +   +     + F               L+NPPF +
Sbjct: 228 YLHGDGGSAIYQLDALDKGLAEENNASPESRSELRDFKRVLKDNAEGFADVALTNPPFAR 287

Query: 304 KWEKDKDAVEKEH-----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            +E+ K    + +        EL   GP    +    +        +       GGR   
Sbjct: 288 DYERKKRGGGRAYAPSVLDAYELSYDGPAEI-LPKAKLKSSAMFLERYLDFLKPGGRLVS 346

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKT- 415
           V+  S L +       +  R WL +  ++EA+V+LP D F R+   + T + I+  +   
Sbjct: 347 VIDDSVLGS----KAFATTRAWLAQKYIVEAVVSLPGDAFQRSEARVKTSILIMRKKVAD 402

Query: 416 EERRGKVQL-------IN--ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +E +G+V +       I+  A +    +  +  K+     ++  +I  ++    +G   +
Sbjct: 403 DEAQGEVFMCYSQFVGIDDPARERVLPVDEDNHKK---AQEEIERISKLFARFSSGDRKK 459

Query: 467 MLDYRTFGYRRIKVLRP 483
            ++         +  RP
Sbjct: 460 DMNKWVIRPGFRRHSRP 476


>gi|256617062|ref|ZP_05473908.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
 gi|256596589|gb|EEU15765.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
          Length = 241

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            +F SE  + A +F TP  V  +   ++      
Sbjct: 183 SQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKE 216


>gi|269126154|ref|YP_003299524.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268311112|gb|ACY97486.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 673

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 48/294 (16%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L  R+        ++  TP  VV L   L               I T+ DPTCG
Sbjct: 161 QQAFEFLRERYLDLHKRRTQE--TPPQVVRLVAELAGP-----------RIETVLDPTCG 207

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G FL   +      G+  ++       GQ+++     +    + +   ++D R      
Sbjct: 208 SGAFLAGML----AKGTRRRLL------GQDVDEAVARLTAIWLALLDADADIRS----- 252

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              G +L +D F G++    ++NP F  +     +            R+  GLP  ++  
Sbjct: 253 ---GDSLRRDAFPGEQADLVVANPQFNDRNWGYDELTTD-------PRWEYGLPPRTESE 302

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H           GG A +++  +           +     LL    + A++ LP 
Sbjct: 303 LAWVQHCLAHCRP----GGLAVLLMPPAAASRRAGRRIRAN----LLRRGALRAVITLPL 354

Query: 396 DLFFRTNIATYLWILSNRKTEER-RGKVQLINATDLWTSIRNEGKKR-RIINDD 447
                T +   +W+L     +ER   +V +++ +           +  R   DD
Sbjct: 355 GAVPNTAVPLTVWVLRRPVPDERPPSQVLMVDTSRSGEGFVETAGRLWRRFTDD 408


>gi|257451600|ref|ZP_05616899.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_5R]
 gi|317058168|ref|ZP_07922653.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_5R]
 gi|313683844|gb|EFS20679.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_5R]
          Length = 328

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 148/372 (39%), Gaps = 69/372 (18%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP ++     + +    D            +YDPTCG G  L+   + V     
Sbjct: 14  SKGIFYTPPELAEFLKSFVDIDTDE-----------VYDPTCGHGSLLSVFGDEVKK--- 59

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     +GQ++ P              +E         +++ G T+ +D F+ K+F
Sbjct: 60  ----------YGQDINPVA------------IEYIKENFPHFHVELGDTIQEDKFSEKKF 97

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF  K+E +++ +  +            L   S    +F +H+ +KL+     
Sbjct: 98  KVILANPPFSVKYEPNEEMLLDKRFKD-----CGILSPASKADYMFNLHILHKLK----E 148

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A ++     L+     + E EIR+WL+EN+ I+ IV +    F  TNIAT L I   
Sbjct: 149 NGIAVVMNFPGILYR---KNKEGEIRKWLIENNYIDTIVHIAGKKFEDTNIATCLIIYRK 205

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI-----LDIYVSRENGKFSRM 467
            K       ++ ++         +E    R+++ ++ R+      +  YV +E  K    
Sbjct: 206 NKVTT---DIKFVD---------SEFNLERMVSLEEIRENNYNLSISTYVQKEEQKEEIN 253

Query: 468 LD---YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +D        +  I +   L+++  L ++  A+++ ++   K+  L + +         +
Sbjct: 254 IDDVNEEANRHFLIHLEETLKVNLFLVQSLEAKIDYEMFLNKIGGLVRKYRSKFKNREKE 313

Query: 525 QIYPYGWAESFV 536
           +I P  W E  +
Sbjct: 314 EI-PKQWEEQLL 324


>gi|227499337|ref|ZP_03929449.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
 gi|227218590|gb|EEI83828.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
          Length = 295

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 111/323 (34%), Gaps = 41/323 (12%)

Query: 216 TGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +  +         +       +G E +   + +C+  MLI  ++       +
Sbjct: 1   TGGFLTSWLKELRKQVKTVADEGAFSKSIYGIEKKQFPYMLCITNMLIHDMDLPEIYHDN 60

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             ++       D     +F   L NPP+G   ++D                 P     S+
Sbjct: 61  SLLR----DVLDYTDEDKFDVILMNPPYGGSEKEDVK------------NHFPADLASSE 104

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + LF+  +  +L+      GR A++L    LF   + + +  I++ LLEN  +  I+ +
Sbjct: 105 TADLFMSVIMYRLK----EKGRVAVILPDGFLF--GSDNAKLNIKKNLLENFNLHTIIRM 158

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQ 451
           P  +F   T+I T +    N       G+ +      +          K + +      +
Sbjct: 159 PNSVFAPYTSITTNILFFDN------TGETKETWFYRMDMPDGYKNFSKTKPMKLAHFDK 212

Query: 452 ILDIYVSREN---------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           ++D +  RE           KF++        Y   +   P     ILD   L     + 
Sbjct: 213 VIDWWDKREKIEIDGFYKAKKFTKKELAEDLSYNFDQCGYPHEEEVILDPMDLIYEYQEE 272

Query: 503 TWRKLSPLHQSFWLDILKPMMQQ 525
                + + +       K   Q+
Sbjct: 273 RQTLNANIDKILGEITRKLGGQK 295


>gi|332559082|ref|ZP_08413404.1| putative restriction endonuclease, N6_Mtase domain protein
           [Rhodobacter sphaeroides WS8N]
 gi|332276794|gb|EGJ22109.1| putative restriction endonuclease, N6_Mtase domain protein
           [Rhodobacter sphaeroides WS8N]
          Length = 876

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 142/419 (33%), Gaps = 80/419 (19%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF---SGIELHPDTVPD-------- 152
           I +  +      +   F    A+LE     ++  + F   + I LHP T+ +        
Sbjct: 242 IEAREEEHSNPLDALQFQFLTAQLENEIRYHRKKRIFREGARINLHPGTIKEVVRKLQGV 301

Query: 153 -------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   +   ++E  +    +   +    F TPR V  L   LL DP     +     
Sbjct: 302 YLFGIDADLNGRLFETFLS--ATMRGKDLGQFFTPRSVAKLGA-LLADPQVDRAR----- 353

Query: 206 IRTLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQEL--EPET 251
           +  + D  CGTGGFL + ++ +             +  +  +       +G +   EP  
Sbjct: 354 MEFVLDGCCGTGGFLIEVLSDMWAKINANPVLSETEKANLRRRVAETAIYGIDSAQEPNL 413

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----------------FTGKRFHYC 295
             +    M +         +     +  +   +                           
Sbjct: 414 ARLARMNMYLHGDGGSSIYEADFLDKNVTDPVQATAEVRAEVRQFREMLLSHPSGLVDVV 473

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGG 354
           L+NPPF K +++     + E +N  L  +     +     S++F     + L++    GG
Sbjct: 474 LTNPPFAKVYDR-----KTERENLILAEYELAATEEKLKSSLMFFERYHDLLKI----GG 524

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSN 412
           R   V+    L    +GS  +E R +L    LI  IV+LP D F R+   + T + IL  
Sbjct: 525 RLISVIDDGIL----SGSSYAEFRNYLRRKFLIRGIVSLPGDAFQRSQARVKTSIVILEK 580

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKR--------RIINDDQRRQILDIYVSRENGK 463
           R     + +         +  + +  ++R        R +  ++  ++  +Y     G+
Sbjct: 581 RDPTSEQDQGPAFRYACRYVGVDDPKRQRTLPIDVETRRLAKEEIARVSSLYKDFVAGR 639


>gi|71897759|ref|ZP_00679985.1| N-6 DNA methylase [Xylella fastidiosa Ann-1]
 gi|71732314|gb|EAO34368.1| N-6 DNA methylase [Xylella fastidiosa Ann-1]
          Length = 222

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE-- 376
              RF   G      G+  +L H    L       GRAA+VL +  +        E +  
Sbjct: 14  PFDRFRTAGGITSGKGNWEWLQHTLACLH----DHGRAAVVLDTGAVTRSSGSKNEDKER 69

Query: 377 -IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IR+W ++ DLI+ ++ LP +LF+ T  A  + +L+ RK+  R+ K+ L+NA+  +    
Sbjct: 70  SIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVLNKRKSAARKDKIVLLNASRRY---- 125

Query: 436 NEGKKRRIINDDQRRQILDIYVSRE 460
            +GK +  + ++  + +  +Y+  E
Sbjct: 126 KKGKPKNYLPEEDVQSLAAMYLKGE 150


>gi|166366727|ref|YP_001659000.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
 gi|166089100|dbj|BAG03808.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
          Length = 588

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 125/393 (31%), Gaps = 78/393 (19%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFS----GIELHPDTVPDRVM 155
           + +     +AK  F  F   + I          + +  + F        L        V+
Sbjct: 230 AALQQMFTDAKQTFNVFPTGTQIQIRSNETVEKIVRELEPFGLYGFKTPLGLAGAGGDVV 289

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE  +      +      ++TPR +V     +              +   + D +CG
Sbjct: 290 GSVYEAFL---TGTLRGDLGQYLTPRQLVEFMVEIA----------DIKIGEKVLDLSCG 336

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRRL 264
           +GGFL  A  +V               H           G E+ P    +C   M++   
Sbjct: 337 SGGFLIRAFINVRKKIRFLDSSQDEKDHLVSNLVTNNLWGIEINPRLATLCRINMILHG- 395

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKR----------------FHYCLSNPPFGKKWEKD 308
                 D  ++I  G ++ +D+F                    F   L NPPF   +E  
Sbjct: 396 ------DGYEHIYTGDSIREDVFENTDGRRTDFLNIEQNNAAMFDVILINPPFNIPYEDS 449

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                       L R+  G  K + G   L L      L+      GR  ++L       
Sbjct: 450 AT----------LNRYYLGRGKAAQGSDYLVLERAIRLLKPET---GRLLVILPHGV--- 493

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEERRGKVQL 424
             +G  E+E+R ++     I   ++LP   F     +N  T +  L     + ++    L
Sbjct: 494 -ASGVSETEVRNFVKSRTHIHGCISLPVGSFKPFGGSNARTCVLYLKKTTGDNKKR--FL 550

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             A  +   I ++  +   +ND     I + Y 
Sbjct: 551 AQAEHVGYDITSKYYRETDLNDLPV--IAEAYH 581


>gi|260579103|ref|ZP_05847001.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602788|gb|EEW16067.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
          Length = 207

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 26/197 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+A++L G    + +   +L    ++ +    +    ++ E  +  GGS 
Sbjct: 6   KKSDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSDKAKSDPYSLIE--VPEGGSF 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDFSSTI 124
            DL +                    G+ +    +   I      ++ + +  + DF    
Sbjct: 64  DDLVA------------------VKGAPDIGERMNIAIRRLAEENDLQGVINNADFDDPN 105

Query: 125 A---RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      L  +   F  I+        D ++ + YE+L+R F +E  +    F TP
Sbjct: 106 KLGEGKAMQDRLTNLISIFQDIDFTGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTP 165

Query: 181 RDVVHLATALLLDPDDA 197
            +V  +   +L  P DA
Sbjct: 166 AEVSRIMAQVLEIPKDA 182


>gi|328765965|gb|EGF76048.1| hypothetical protein BATDEDRAFT_93094 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 153

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +Y P CG+G     ++  +    +HH     +  +GQE    T+ +    + IR + + 
Sbjct: 8   KIYGPACGSGEMFVQSVKFIE---AHHGNTKDISIYGQEYTNTTYKMAKMNLAIRGISA- 63

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +      +T+SKD     +  + ++NPPF +K  +  + +  + +       G  
Sbjct: 64  -----NLGNMAENTVSKDQHKDLKVDFIMANPPFNQKQWRAANELHDDPRWA-----GYD 113

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +P   + +  +++++ +KL    +  G A  +L++  L + R
Sbjct: 114 VPPTGNANYAWILNIVSKL----SENGVAGFLLANGALRDSR 151


>gi|182438223|ref|YP_001825942.1| putative restriction-modification system adenine methylase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178466739|dbj|BAG21259.1| putative restriction-modification system adenine methylase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 823

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 33/266 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R         +  +TP  +  L   L   P D     S   +R++ DP  G
Sbjct: 284 GQAFEFLLGRHLDANPR--QYTLTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAG 341

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L               +      + QE +    A+     L    ++      S  
Sbjct: 342 TGSLL-------------RAVTGPAALYAQEADAGLAALTALR-LALCADATRDAPASPA 387

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           ++ G TL  D F        L +PPF  + W  D+ A +         R+  G P   + 
Sbjct: 388 VRTGDTLRADAFPRLATDTVLCHPPFNDRNWGHDELAYD--------PRWEYGFPARVES 439

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + ++ H   +L      GG A +++  +             IR  LL    + A++ALP
Sbjct: 440 ELAWVQHALARLR----DGGTAVLLMPPAAASRRSG----RRIRADLLRRGALRAVIALP 491

Query: 395 TDLFFRTNIATYLWILSNRKTEERRG 420
                   I  +LW+L       R G
Sbjct: 492 AGAAPPYGIPLHLWVLRRPTPGVRPG 517


>gi|297561636|ref|YP_003680610.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846084|gb|ADH68104.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 709

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 34/271 (12%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +E L+ R              P ++  L   L       +     G   T+ DP CG 
Sbjct: 171 TAFERLLSRLDQRSPS--GSHTVPPELADLMVVLA-----GIANAGSGPEDTVADPACGR 223

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKN 275
           GG L  A                    GQ+ +  +  +    +     L  +    +S  
Sbjct: 224 GGLLLAAARGGRR-----------ALLGQDRDAASVWLAALRLAFAGALTGEADLRVSDA 272

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           ++  +               +  PPFG++    ++  E         R+  G+P   +  
Sbjct: 273 LRLPAFAPDAPDGADGADAVVCAPPFGERNWGVEELAED-------PRWTYGVPPRLESD 325

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H  + +      GG A +++                IRR LL      A+V+LP 
Sbjct: 326 LAWVQHCLSLVRP----GGSAVVLMPPGAAQRPSG----RRIRRSLLRAGAFRAVVSLPP 377

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                  +   LW+L   + +     V L++
Sbjct: 378 GFAAHYAVPLQLWVLRRPERDAVPAPVLLVD 408


>gi|67459800|ref|YP_247423.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67459869|ref|YP_247491.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005333|gb|AAY62258.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005402|gb|AAY62326.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
          Length = 332

 Score =  111 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 44/262 (16%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           S I  L K  +L  I       +LH       +  + +E+ +R +G        ++ TPR
Sbjct: 2   SPIETLVKPSILNTIVAKLD--DLHLSATHSDIKGDAFEYFLRNYG-GADTDFGEYFTPR 58

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKI 236
            +V     LL           P     +YDP CGTGG L  +  H+ D  S     + + 
Sbjct: 59  HIVTALVNLL----------DPKFGEKVYDPFCGTGGMLITSYKHIYDNLSLRTPENIQR 108

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------ 290
                 +G E+  + + +    M++           +      +    D+          
Sbjct: 109 LKKQTVYGGEI-TKMYRIAKMNMILAGDGHSNIVRQNSYGTPDTIKQIDVIKDGFVTKEN 167

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              ++   +SN PFG+K + +   +              G        +  ++H  N L 
Sbjct: 168 IKIKYDVVISNMPFGRKMKTEHAGL-------------YGFN-TRSAEITGVLHCLNSL- 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGR 369
              N   R  +++    LF+ R
Sbjct: 213 -NNNENARLGLIVPEGILFDKR 233


>gi|57242478|ref|ZP_00370416.1| type I restriction-modification system, M subunit, putative
           [Campylobacter upsaliensis RM3195]
 gi|57016763|gb|EAL53546.1| type I restriction-modification system, M subunit, putative
           [Campylobacter upsaliensis RM3195]
          Length = 695

 Score =  111 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 77/529 (14%), Positives = 152/529 (28%), Gaps = 79/529 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKH------TDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +   L   + K    LW   K       ++F K+I      + ++   +       E Y 
Sbjct: 174 TPGELEALLKKIHNYLWNGGKRNPAEAFSEFSKII----FTKMMDEKAKTDIKYKLEHYE 229

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                + D  +  K     +    +   +   +    +                 ++  F
Sbjct: 230 FQKNRDEDKFALEKRIKGLYEKYKKKDSNVFDNALILDA----------------DEIKF 273

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                          + +N  GI L    +   +   I+++ ++ F       A  F TP
Sbjct: 274 ---------------LVENLEGIGLS--KIELDIKGEIFQNFLKDFF---KGKAGQFFTP 313

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +VV                        + DP+CG+GGFL   + ++ +     K     
Sbjct: 314 FNVVRFVV----------GCFDITQNDLVLDPSCGSGGFLLQTLQYMQEKSKKLKKKAQK 363

Query: 241 VP---------HGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGK 290
                      +G E+           M+I     ++       +  +      + F   
Sbjct: 364 RFWHSFAEKNLYGIEINGGISQTAKMNMIIHDDGHTNVITADGLDSFENFIRKNNKFQKN 423

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM----HLANKL 346
            FH+  +NPPFG      K   E          F   +        L           + 
Sbjct: 424 TFHFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSGQKSEILFLERY 483

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIA 404
                 GG  A VL    L N         +R +LLE   + A  +LP   F  +   + 
Sbjct: 484 FEFLKEGGIVACVLPDGILTNSSL----QNVRDYLLERFYLLASFSLPQHTFSNYGAGVK 539

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           + + +L  +  +  +     ++  +   +   +  K  I+      + L   + +E    
Sbjct: 540 SSILVLKKKDKKAIK---AFLDKKEAIQNAITQKHKDEILTLRDELKALITPLQKELKAL 596

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +M D       +I  L+    +          L  D    ++S   + 
Sbjct: 597 EKMQDKDLKTQEQIATLKEQIANARETYRYKEELVRDKICAEVSEKLKQ 645


>gi|326778874|ref|ZP_08238139.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326659207|gb|EGE44053.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 784

 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 91/266 (34%), Gaps = 33/266 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R         +  +TP  +  L   L   P D     S   +R++ DP  G
Sbjct: 245 GQAFEFLLGRHLDANPR--QYTLTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAG 302

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L               +      + QE +    A+     L    ++      S  
Sbjct: 303 TGTLL-------------RAVTGPAALYAQEADAGLAALTALR-LALCADATRDAPASPA 348

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           ++ G TL  D F        L +PPF  + W  D+ A +         R+  G P   + 
Sbjct: 349 VRTGDTLRADAFPRLATDTVLCHPPFNDRNWGHDELAYD--------PRWEYGFPARVES 400

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + ++ H   +L      GG A +++  +             IR  LL    + A++ALP
Sbjct: 401 ELAWVQHALARLR----DGGTAVLLMPPAAASRRSG----RRIRADLLRRGALRAVIALP 452

Query: 395 TDLFFRTNIATYLWILSNRKTEERRG 420
                   I  +LW+L       R G
Sbjct: 453 AGAAPPYGIPLHLWVLRRPTPGVRPG 478


>gi|113460576|ref|YP_718640.1| restriction enzyme subunit alpha [Haemophilus somnus 129PT]
 gi|112822619|gb|ABI24708.1| site-specific DNA-methyltransferase (adenine-specific) [Haemophilus
           somnus 129PT]
          Length = 656

 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 128/407 (31%), Gaps = 56/407 (13%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115
           +Y  F  S++ +   ++  G   Y   E +L          R+ L +      DN K   
Sbjct: 216 EYKNFDISDL-IGDKIRTDGSKIYKAIEDNLKRANVSPEVKRDKLLNQFNIIKDNNKINE 274

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           ++ +   T  R     L   I  N        ++  +  +   Y   +  +     +   
Sbjct: 275 KNSNLGKTPLRYFTEVLYNGIFTNI-----KYNSSTEDYIGRFYGEFMS-YSGGDGQSLG 328

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             +TPR +  L   LL                 + DP CGT GFL  AM+H+        
Sbjct: 329 IILTPRHITDLFCELL----------DIQPTDKVLDPCCGTAGFLIAAMHHMLSKTEDEN 378

Query: 236 IPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               +      G EL+     +    M++R        +     Q  S +       K  
Sbjct: 379 EQIEIRKNRLFGIELQDYMFTIATTNMILRGDGKSNLENQDFLAQNPSKIQ-----LKGC 433

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPP+ +  +++ +  E                              N L      
Sbjct: 434 TVGMMNPPYSQGSKQNSELYEIN--------------------------FVNHLLESLVE 467

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G + A+++  S          E  ++  +L+   +E ++ L  + F+       + + + 
Sbjct: 468 GAKVAVIVPQSTF--TGKTKDEQNLKTKILKKHTLEGVITLNKNTFYGVGTNPCIGVFTA 525

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVS 458
                +  K + IN  +    +          +  D+++ +LD++  
Sbjct: 526 GIPHSKTKKAKFINFENDGYIVSKHIGLIDDGSAKDKKQHLLDVWNE 572


>gi|71275696|ref|ZP_00651981.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Dixon]
 gi|71897848|ref|ZP_00680074.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Ann-1]
 gi|71163587|gb|EAO13304.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Dixon]
 gi|71732403|gb|EAO34457.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Ann-1]
          Length = 265

 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 27/207 (13%)

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
              DF       R      L  + + FS     L    V    +   YE+L+R+F     
Sbjct: 37  DIVDFAIERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAEGSG 96

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +  TP ++  L   +L           P      +D  CG+GG L        +  
Sbjct: 97  QSAGELFTPTEMGFLMAHIL----------HPKPGDACHDYACGSGGLLIKLQIVAHELD 146

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
              ++P  L   GQEL+ + +A+     +I  +E +  R        G T+    F    
Sbjct: 147 PTSRVPVKLS--GQELQADNYAIAQMNAIIHDMEVELAR--------GDTMINPKFRAAS 196

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVE 313
              +     ++NP + + +  D  A +
Sbjct: 197 GKIRSHDIVVANPMWNQPFTADLFAND 223


>gi|320536513|ref|ZP_08036543.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320146639|gb|EFW38225.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 674

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 106/324 (32%), Gaps = 52/324 (16%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +  +T  +  +   Y   +  +     +     +TPR +  L   L             
Sbjct: 296 NIRYNTSAEDFLGRFYGEFMS-YSGGDGQALGIILTPRHITELFCNLA----------DL 344

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                ++DP CGT GFL  AM+++   A               G E++     +    M+
Sbjct: 345 KPNDKVFDPCCGTAGFLIAAMHNMLLKAKTLDEKNDIKKKQLFGIEIQSYMFTIATTNMI 404

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +R        D   N+     L+++ F  ++  +   + NPP+ +  +++ D  E     
Sbjct: 405 LRG-------DGKSNLYNKDFLNENPFDLQKEGYTVGMMNPPYSQGSKQNPDLYEI---- 453

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                                      L      GG+  +++  S +      + E  I+
Sbjct: 454 ----------------------AFTEHLLNSVTEGGKVIVIVPQSSM--TGKTTEEKNIK 489

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             +L+   +E ++ L  + F+       + I +           + IN  D    +    
Sbjct: 490 TNILKKHTLEGVITLNKNTFYGVGTNPCIAIFTAHIPHSENKVCKFINFEDDGYEVAKHI 549

Query: 439 KK-RRIINDDQRRQILDIYVSREN 461
                    D+++ +LD++  R +
Sbjct: 550 GLVDNGSAKDKKQHLLDVWFDRTD 573


>gi|313903009|ref|ZP_07836404.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965]
 gi|313466733|gb|EFR62252.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965]
          Length = 906

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 107/301 (35%), Gaps = 38/301 (12%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           ++         +   +E     FGS        + T R +     A+L            
Sbjct: 296 DISITATHVDSIGKAFESF---FGSIFRGELGQYFTMRQLARFIVAML----------DI 342

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILV------PHGQELEPETH 252
                + DPT G+GGFL + +  V      D      +  + +       +G E+ P   
Sbjct: 343 DHRDYVIDPTAGSGGFLLEVLLQVWHKIDKDFAGRSDLERLKIDFALHKVYGIEIHPVLA 402

Query: 253 AVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW-EKDKD 310
            +C   +L+     ++   D S      +    +  T  RF   + NPPFG    E D+D
Sbjct: 403 RICKINLLLHHDGHTNIEGDRSCLDSIFNLPRLNPPTAGRFTRVVGNPPFGDTVKEGDED 462

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            + +      L  F     +     +     +  +       GGR  +++    L N   
Sbjct: 463 LLGQN----SLSNFHVAEGRT---QVPSEHVILERAIQFLADGGRLGLIIPDGILNNPGD 515

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNI--ATYLWILSNRKTEERRGKVQLINAT 428
            S   ++RR+L+ N +IEAIV+LP   F ++     T +      +  ER   V   NA 
Sbjct: 516 HSNCPQVRRFLVMNGVIEAIVSLPDYAFRKSGAQNKTSILFFRKFEPHER---VAFKNAY 572

Query: 429 D 429
           D
Sbjct: 573 D 573


>gi|327390239|gb|EGE88582.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
 gi|332202745|gb|EGJ16814.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 284

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 92/273 (33%), Gaps = 42/273 (15%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 10  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 69

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 70  AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 129

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G+ GFL  A  ++
Sbjct: 130 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGSAGFLVSASRYL 177

Query: 228 ADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                  +            + HG + +     +    M++  +E       +  I    
Sbjct: 178 KRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLD 230

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +LS+D     ++   L+NPPF    + +  + +
Sbjct: 231 SLSQDNEEADKYTLVLANPPFKGSLDYNSTSND 263


>gi|157804105|ref|YP_001492654.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
 gi|157785368|gb|ABV73869.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
          Length = 869

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 188/555 (33%), Gaps = 69/555 (12%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           K       N  L +  +++    + ++ Y    L     ++ ++    +F +  + +   
Sbjct: 212 KMDNDKYINKKLMNNQEISMDDIFFSTNYIDKNLSLFPKQDPIKKIFNNFREELEILIIK 271

Query: 118 FDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                   + E+  L     K       +   + + + +   I+E  +R   +       
Sbjct: 272 EGKKRIFTKGEELNLSLDTIKYVVKRLEKFDLNDIDEDLNGRIFEVFLR--AAVRGRELG 329

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH- 234
            + TPRDV+     L            P     + D  CG+GGFL ++  ++ +    + 
Sbjct: 330 QYFTPRDVIKFMVKLA----------GPNENTKILDACCGSGGFLIESFAYIMNNIPKNL 379

Query: 235 ---------KIPPILVPHGQELEPETHAVCVAGMLIR--------RLESDPRRDLSKNIQ 277
                    K     +  G + E +   +    M +         RL+    ++L+ +  
Sbjct: 380 SKSKHEEIVKNIKENLIFGVDKEEKVVRLARINMYVHKDSSSKIFRLQDALDKNLTIDPT 439

Query: 278 QGSTLSKDLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                 +     K       F   L+NPPF   ++       K            G    
Sbjct: 440 LPDEEQQQYKDAKEVLINGAFQIVLTNPPFSSNYKMKDKDTNKSDTRILKNYTVVGKKNS 499

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + ++LF+    + LEL    GG+   V+  S L        ++  R W+L+   I+A++
Sbjct: 500 INSNILFIERYYDLLEL----GGKLITVIDDSLL----NAKNQASFREWILDRFHIKAVI 551

Query: 392 ALPTDLFFR--TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +LP + F    T I T +  L  ++ +        I+   ++ +I N        ND   
Sbjct: 552 SLPFNAFVNASTTIKTSIIYLEKKEYKS-------ISKNKIFMAICNNVGHDDSGNDTPE 604

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           R  L+I        +S+ LD+         ++     S +L     +     I + K+S 
Sbjct: 605 RNNLNIV-------YSKWLDFNKDFSLPDIIIENQNKSELLT---CSLQIFSIDYSKMS- 653

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
             + F      P +Q IY    +    K  IK+++  TL+   +  ++    N       
Sbjct: 654 -SKRFDAFFYSPELQNIYKKINSLDKNKFIIKTSKEFTLQKSVNAKYVQNNFNTIFNYIE 712

Query: 570 RADPVTDVNGEWIPD 584
                 +  G+ +  
Sbjct: 713 VG--SCNKKGDIVSS 725


>gi|237753064|ref|ZP_04583544.1| N-6 DNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375331|gb|EEO25422.1| N-6 DNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 694

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 138/458 (30%), Gaps = 42/458 (9%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            K+A Y      +Y          +  LE  I       K   +   F + +  +  A  
Sbjct: 212 EKIAEYDADYKLKYYEFQKNRDEDKFALEKRIKGLYQKYKEK-DSNVFDNAL--ILDADE 268

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +  + +N  GI L    +   +   +++     F       A  + TP ++V        
Sbjct: 269 IKFLVENLEGISLSETDL--DIKGKVFQKF---FADFFKGTAGQYFTPLNIVRFMVECFD 323

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------P 242
              D L          + DP+CG+GGFL   + ++ +     K                 
Sbjct: 324 IRQDDL----------VLDPSCGSGGFLLQTLQYMQEKSKKLKKKEAQKRFWHSFAEKNL 373

Query: 243 HGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           +G E+           M+I     ++       +  +      + F    F++  +NPPF
Sbjct: 374 YGIEISGGISQTAKMNMIIHDDGHTNVITADGLDSFENFIRKNNKFQKNTFNFIFTNPPF 433

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM----HLANKLELPPNGGGRAA 357
           G      K   E          F   +        L           +       GG  A
Sbjct: 434 GSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSGQKSEILFLERYFEFLKEGGIVA 493

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
            VL    L N         +R +LLE   + A  +LP   F  +   + + + +L  +  
Sbjct: 494 CVLPDGILTNSSL----QNVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSILVLKKKDK 549

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +  +     ++  +   +   +  K  I+      + L   + +E     +M D      
Sbjct: 550 KAMK---AFLDKKEAIQNAITQKHKGEILTLRDELKALITPLQKELKALEKMQDKDLKTQ 606

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +I  L+    +          L  D    ++S   + 
Sbjct: 607 EQIATLKEQIANARETYRYKEELVRDKICAEVSEKLKQ 644


>gi|586070|sp|Q07605|T4BA_BACCO RecName: Full=Restriction enzyme BgcI subunit alpha; Includes:
           RecName: Full=Adenine-specific methyltransferase
           activity
 gi|304140|gb|AAA16626.1| restriction endonuclease alpha subunit [Bacillus coagulans]
          Length = 637

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 106/324 (32%), Gaps = 47/324 (14%)

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           D   ++  + LE   L Y      + I +         ++ N Y   + ++G        
Sbjct: 267 DVTLNTVNSNLEMTPLKYFATTLEAEIMDKIKSNTDFDILGNFYGEFV-KYGGNDGNPLG 325

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGS 232
             +TPR +  L   L+                 + DP CGTG FL  AMN +   A+   
Sbjct: 326 IVLTPRHITSLMAELIGINKSDF----------VLDPACGTGAFLISAMNRMLGQAENDD 375

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +       +G E++ +   +    M++R          +       T    +  G   
Sbjct: 376 ERRDIKQNRLYGIEIQQKLFTIATTNMILRG-----DGKSNLIRDNCLTFDNTIMNGYGI 430

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  L NPP+ +             KN +               +  L  +   LE+   G
Sbjct: 431 NKILMNPPYSQ------------AKNDQTQH------------LSELSFIQQALEMLVVG 466

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G   AIV  S+ +   R    +   ++ +L+   +E ++ L  D F    +   + I   
Sbjct: 467 GKLCAIVPQSTMVGKNR---HDKARKKQILKQHTLETVITLNKDTFHGVGVNPCIVIFKA 523

Query: 413 RKTEERRGKVQLINATDLWTSIRN 436
                   +V  +N  D    +R 
Sbjct: 524 GIKHPENKRVSFVNFEDDGHVVRK 547


>gi|329963238|ref|ZP_08300975.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057]
 gi|328528934|gb|EGF55874.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057]
          Length = 484

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 136/422 (32%), Gaps = 89/422 (21%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNF--------SGIE--LHPDTVPDRVMSNIYE 160
            + I +DF+F   I R+E       I  +         S +   +    +   +  ++YE
Sbjct: 81  PRYIIQDFEF--KINRIEIVSECVDIINSIYKETENLGSSLNGTITYYDIDSAIFDDLYE 138

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            ++++      E  ++   PR + +L  +L                  +YDP CG GG L
Sbjct: 139 KIMKK-----PEKFQNLYIPRHIRYLMASLT----------QINYSDRIYDPMCGNGGLL 183

Query: 221 TDAMNHVADCGSHHKIPPIL----------------------VPHGQELEPETHAVCVAG 258
                 +       +   ++                        +G +  P+   +    
Sbjct: 184 LSVYERIMIKEYESQNQDVIDTDNDGFSTLRYSLMANLPSPDTLNGSDPNPQQLLLSALS 243

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +R ++    +  +      S         + F   ++NPPFG+K+ K     E   KN
Sbjct: 244 FQLRGIKKANLQPNNFIQDNIS---------EHFDVIIANPPFGQKFNKPHQINEVVIKN 294

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E+                      +K+    +  GRA I++S   L N    S   + R
Sbjct: 295 AEI-------------------VFIDKIADTLSPTGRATIIVSEGFLSN--TNSQHMQCR 333

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + L     +E +++LP+ +F  T   + + ILS  +   R      +   +L        
Sbjct: 334 KKLFTQYRLEGVISLPSGIFLNTQAKSSILILSKDEHNNRPD----VWFYELQNDGYTND 389

Query: 439 KKRRIINDDQRRQILDIYVSR------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           + +R   +    +++  +  R      +  +    + +         +       F  ++
Sbjct: 390 RAKRRTKEFPLPEVVKAFRERLYNSQNKRTETCFFVSFEEIQRNDYNLSYSRYKQFNYER 449

Query: 493 TG 494
             
Sbjct: 450 QD 451


>gi|229827314|ref|ZP_04453383.1| hypothetical protein GCWU000182_02700 [Abiotrophia defectiva ATCC
           49176]
 gi|229788932|gb|EEP25046.1| hypothetical protein GCWU000182_02700 [Abiotrophia defectiva ATCC
           49176]
          Length = 293

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 95/252 (37%), Gaps = 37/252 (14%)

Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL  A  ++ +                   + +G +++     +    M+   ++  
Sbjct: 19  TSGFLVAAGEYLKENRKEEIFYNRQKKEHYMNHMFYGYDMDRTMLRIDAMNMMTHGID-- 76

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +  I+   +LS       ++   L+NPPF  K   D D+V  +            
Sbjct: 77  -----NPFIEYRDSLSDRNSDKDKYSLVLANPPF--KGSLDADSVSGDLLK--------- 120

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LFL       ++    G R A ++    LF   +     +IR+ ++EN  +
Sbjct: 121 VCKTKKTELLFLTLFIRMHKI----GERCACIVPDGVLF--GSSKAHKDIRKEIVENQRL 174

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
            A++++P+ +F   T ++T + I +  +     G    +   D+     +   KR  + D
Sbjct: 175 VAVISMPSGVFKLYTGVSTAILIFTKTE----HGGTDNLWFYDMTADGFSLDDKRSPVAD 230

Query: 447 DQRRQILDIYVS 458
           +    I+  + +
Sbjct: 231 NDIPDIIQRFKN 242


>gi|72160665|ref|YP_288322.1| hypothetical protein Tfu_0261 [Thermobifida fusca YX]
 gi|71914397|gb|AAZ54299.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 680

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 36/253 (14%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP+CG+G  L     H           P +  +GQ+++P    +    + +   ++D
Sbjct: 199 TVFDPSCGSGTLLHAMARHA----------PGVTLYGQDIDPAAARLARVRLQLAGADAD 248

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            R         G +L  D F G      + +PPF +     ++            R+  G
Sbjct: 249 IRV--------GDSLRADAFPGLAADTVVLHPPFNQTDWGFEEL-------SFDSRWRYG 293

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   +  + ++ H    +      GG A +VL  +    G            LL    +
Sbjct: 294 TPARKEPELAWVQHALAHVRP----GGTAIVVLPPAVASRGSGRRVRR----ELLRRGAL 345

Query: 388 EAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
            A++ALPT L         LWIL N   + +  GKV L +A+D       E   +     
Sbjct: 346 RAVIALPTGLATPMGTPLTLWILRNPEDSTDLPGKVLLFDASDGRVDDSPESSTQPWSAV 405

Query: 447 DQRRQILDIYVSR 459
                I   Y   
Sbjct: 406 AH--AITATYREF 416


>gi|29830085|ref|NP_824719.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces avermitilis MA-4680]
 gi|29607195|dbj|BAC71254.1| putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces avermitilis
           MA-4680]
          Length = 678

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 110/318 (34%), Gaps = 57/318 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+ R         +  +TP D+  L   L             G  R+  DP CGTG 
Sbjct: 169 YEFLLGRHLDANPR--QYTLTPGDLAALMADLA------------GPARSFLDPACGTGA 214

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L          G+  +       +GQ+  PE   +    + +           +     
Sbjct: 215 LLRAVA-----PGTDQE------LYGQDSAPELAELTALRLALH-------TRAAVRTAV 256

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G +L  D +   R    L +PPF ++ W  D+ A +         R+  G P  ++  + 
Sbjct: 257 GDSLRADAYETLRADAVLCHPPFNERNWGHDELAYD--------PRWEYGFPARTESELA 308

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H   +L      GG A +++  +             IR  LL    + A++ALP   
Sbjct: 309 WVQHALARLR----DGGTAVLLMPPAAASRRSG----RRIRADLLRRGALRAVIALPVGA 360

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLIN------ATDLWTSIRNEGKKRRIINDDQRRQ 451
               NI  +LW+L   +    + +V L +      A D    +     +  +++      
Sbjct: 361 APPYNIPLHLWVLRRPERAPAQPEVLLADTAGVSEAADGRGRLDWPAVRAAVLDAWH--P 418

Query: 452 ILDIYVSRENGKFSRMLD 469
                 +RE    SR + 
Sbjct: 419 FDRTGTTREEPGVSRSVP 436


>gi|86146745|ref|ZP_01065065.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
 gi|85835395|gb|EAQ53533.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
          Length = 198

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 68/185 (36%), Gaps = 11/185 (5%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           ++   +       +W  A  L G  + +++  V+L    L+ +    E  R  + +    
Sbjct: 18  SKAKKATKGFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMIDDG-- 75

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
              + ++++ F +     F+   +   S + +   ++++        S I   + + K  
Sbjct: 76  -QEAFVEMKEFYQQ-DNIFFLPEDARWSFVKARAKQDDIAIIIDTALSTIEKNNPSLKDA 133

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     ++K   L    +N   +    D   + ++  +YE+ + +F +   +G 
Sbjct: 134 LPDNYFSRQGLEVKKLASLIDSIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGG 193

Query: 175 EDFMT 179
                
Sbjct: 194 RVLYA 198


>gi|17158081|ref|NP_478077.1| SsmT protein [Corynebacterium glutamicum]
 gi|17059600|emb|CAD12208.1| SsmT protein [Corynebacterium glutamicum]
          Length = 848

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 154/454 (33%), Gaps = 54/454 (11%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           L  T S V +   + G  +  L     V       T E S S     N    +   ++  
Sbjct: 182 LFKTLSGVADIMRSGGVEDKQLRYIETVKLLLARYTDERSASDPQDKNGGVLVMQILSDG 241

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------DRVMSNIYE 160
             N +   +D    S     +   L            L    V        D     I +
Sbjct: 242 DPNFRNRMDDLYKRSAARYSKAKTLFANKTSQLDDATLRQLVVKIQGFRLTDAKTETIQQ 301

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             +    +   +    + TP  ++     ++             +   + DP  GTG FL
Sbjct: 302 IFMSFVPAVFKKELSQYFTPISLIETVVEMVDIG----------ITDKVVDPAMGTGDFL 351

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +A+         H+        G + +P  + + +  M++        +D    +    
Sbjct: 352 VEALEKRRGDDDIHQ-----RLFGADRDPSAYELAIVNMILN-------KDGQTGLVLQD 399

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG-----ELGRFGPGLPKISDGS 335
           ++          +  L NPPFG +  +   +V + +  G     +         ++    
Sbjct: 400 SIKNHTLWANEMNVALCNPPFGSRTVERSKSVLEAYDLGYKWEEDSNGVMYKTDEVLSSQ 459

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L ++ +    ++  +  GR  I+L    L    +G+    +R+W++++ ++ A+V LP 
Sbjct: 460 QLGILFIERCWKMLTDQ-GRLGIILPEGYL----SGAKYKYLRQWIIDHFIVHAVVELPR 514

Query: 396 DLFFRT--NIATYLWILSNRKTEERRG----------KVQLINATDLWTSIRNEGKKRRI 443
            +F ++  ++ + + IL       R            KV    A D   + + + +   +
Sbjct: 515 RMFVKSDADLRSNILILEKSDAPSRNAGRKIYASMVRKVGYKLAGDFSATPQQDPETGLV 574

Query: 444 INDDQRRQILDIYVSR---ENGKFSRMLDYRTFG 474
           ++DD+   +LD   +R   E  +F ++ D    G
Sbjct: 575 LHDDENEPLLDSDFNRVLEEYKQFQKVTDREWEG 608


>gi|322392569|ref|ZP_08066029.1| restriction enzyme BgcI subunit alpha [Streptococcus peroris ATCC
           700780]
 gi|321144561|gb|EFX39962.1| restriction enzyme BgcI subunit alpha [Streptococcus peroris ATCC
           700780]
          Length = 660

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 131/415 (31%), Gaps = 58/415 (13%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           LA   +     S   + G +         + + +   R N+   +    D   + F    
Sbjct: 210 LALRETEHGNFSLESLTGDTVKTDGSKIYAAIKANLQRANVSPEVKK--DKLLSQFAIIK 267

Query: 120 FSSTIARLEKAGLLYKICKNFSGI-------ELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                   + A L     K+F+          L  ++  +  +   Y   +  +     +
Sbjct: 268 -DDVKINEKNANLGKTPIKHFTEFLYKSIYQSLRYNSSAEDYLGRFYGEFMS-YSGGDGQ 325

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---AD 229
                +TP+ +  L   L+                 ++DPTCGT GFL  AM+ +   A+
Sbjct: 326 NLGIVLTPKHITELFCDLV----------DLKPTDKVFDPTCGTAGFLIAAMHDMLTKAE 375

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             S           G E +     +    M++R        +     Q  S         
Sbjct: 376 NDSQRDQIRKHQLFGIEEQSYMFTIATTNMILRGDGKSNLENQDFLRQNPS-----KLQL 430

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K+ +  + NPP+      + +  E                           HL N L   
Sbjct: 431 KQCNVGMMNPPYSMGSTANTELYEINFT----------------------EHLLNSL--- 465

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G +A +++  S          E E ++ +L++  +E ++ L  + F+       + +
Sbjct: 466 -VEGAKAVVIVPQSTF--TGKTKFEKEAKQNILKHHTLEGVITLNKNTFYGVGTNPCIAV 522

Query: 410 LSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +         + + IN   D +   ++ G        D+++ +LD++  R   +
Sbjct: 523 FTAGIPHRLEKECKFINFENDGFEVSKHIGLVETATAKDKKQHLLDVWFDRTEAE 577


>gi|229148006|ref|ZP_04276345.1| N-6 DNA methylase [Bacillus cereus BDRD-ST24]
 gi|228635431|gb|EEK91922.1| N-6 DNA methylase [Bacillus cereus BDRD-ST24]
          Length = 1009

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 112/675 (16%), Positives = 220/675 (32%), Gaps = 109/675 (16%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           + I+   LLR  E  L+        + L    +   L  ++                   
Sbjct: 12  EYIIELLLLRIFEVKLKRDPDFKELRNLFVEKNETKLFYYLNTIDSRTITEELNKNFFPF 71

Query: 93  STNTRNNLESYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             N  N               +   + ++   +S      ++G L +I +  S ++    
Sbjct: 72  YGNILNEARKVFQGNLSIKVQDQLVLIQEVFRNSNFTNNVQSGNLEEIIQAVSDLD-EER 130

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   ++ +  E  +    +  ++    F TP  + H    L+           P +  T
Sbjct: 131 LLNTDLLGDAIESALSE--TGGTKDIGLFRTPDHIRHFMLGLV----------EPTINDT 178

Query: 209 LYDPTCGTGGFLTDAMNHVAD----------CGSHHKIPPILV----------------- 241
           ++DP CGTGGFL D    V +            +H ++                      
Sbjct: 179 IFDPACGTGGFLFDGFEFVMESILKEEKWPGTKAHPELQEWFKGYFNKTTVKFPSDEEAL 238

Query: 242 ------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHY 294
                  +G E       +      IR L          NIQQG +L+  D  + K    
Sbjct: 239 NFYRSGIYGIEYLGVIRKMAAVNFYIRGLN-------PHNIQQGDSLAMFDQSSIKSKSV 291

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG + +++      E  + E           S+ + LF+  + + L+     GG
Sbjct: 292 VLANPPFGAERDQEAYPNVWEDYSKE-----------SETTTLFVKLMLDSLK----DGG 336

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNI--ATYLWILS 411
           + A+V+S   L   +  +    +R+ +LE   +  ++ LP  +F  +T I   T +    
Sbjct: 337 KCAVVVSEGFLTWEQGSA--KALRKLILEEAKLIGVIGLPQGVFVSKTGIGPKTSILFFE 394

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------ENGKF 464
             K  E       +    +      +G  R +    Q  + LDIY +        +    
Sbjct: 395 KGKPTEN------VWFYQVTNDGYTKGTNRTVTKGSQLIEALDIYHNYIKKGLTPKESPN 448

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S ++          ++   +R    L      + + D    KL     +          +
Sbjct: 449 SFVVPVDRINTLDPRIKEKIRQEITLT----MQEKKDKEKTKLIKDIDAKLKVSKVDSNE 504

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                    +  K  IK+  AK    K  K+ + +F +A    +  A+         +  
Sbjct: 505 YDQKIRQFNNVWKSKIKNEIAK----KIDKTHVYSFNSATYSTNFSAE--QLRVWNKVTH 558

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE----INFNRF 640
            + +  ENV    ++ + + R ++    D++      D  +     +  E    I  +  
Sbjct: 559 KSSSNIENVE---TLDEKYERLINSEHKDSFQSLSKFDLTNALEADIVREYVENIP-SSV 614

Query: 641 FYQYQPSRKLQDIDA 655
           F +Y   +K+ +I  
Sbjct: 615 FDEYPELKKVDEIFK 629


>gi|326202976|ref|ZP_08192843.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325987053|gb|EGD47882.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 737

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/538 (15%), Positives = 161/538 (29%), Gaps = 65/538 (12%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             L  GG     E+F ++    F    +    TL       N + +    +D      + 
Sbjct: 191 DALWAGGKRNPSEAFDELDKVIFCKLWDER--TLRKNGEPYNFQVFTGEATDKLLQRIKS 248

Query: 118 FDFSSTIARLE--------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                     E         A  L  +    + + L    +  +     +E  +  F   
Sbjct: 249 IYNKGKAKDPEVFRDDIRLNAKELETVVGYLAKVNLTATDLDSK--GKAFETFMGSFF-- 304

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                  + TPR++V      L   ++++          + D +CG+GGFL  A++ V +
Sbjct: 305 -RGEFGQYFTPRNIVKFIVESLPITNESV----------VLDTSCGSGGFLLYALDKVRN 353

Query: 230 CGSHHKIPPILV-----------------PHGQELEPETHAVCVAGMLIRR---LESDPR 269
                                         +G E+           M+I           
Sbjct: 354 IADQKAEEGYFSKDSKEHWNFWHDFAEKRLYGVEISESIARTAKMNMIIHDDGHTNVVAF 413

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             L    +   T     F   RF + ++NPPFG   +  +    ++ + G          
Sbjct: 414 DGLEGIDKLSETTKNPGFKKNRFDFIITNPPFGSTIKYSEHRYIEDFELGCKS-IDWIEA 472

Query: 330 KISDGSML-------FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           K+ +  +          +    +     + GG  AIV+    L N         +R W+ 
Sbjct: 473 KLKNVDLNSPRDNQSSEILFIERCHQYLHDGGILAIVIPDGILTNSSM----QYVRDWIE 528

Query: 383 ENDLIEAIVALPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           E   I A+V++P   F      + + +  L    +E+    ++ I  +    +       
Sbjct: 529 EKYRIIAVVSMPQTAFTANGAGVKSSVLFLYKL-SEKDTATIRAIKKSLQDKTFDKPEYG 587

Query: 441 RRIINDDQRRQ-ILD----IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             I   +Q +Q IL          E    S +   R  G     + R L           
Sbjct: 588 AAITALEQEKQTILKRGDVTKQEMEEAFVSHIEALRAQGNHTKDIERQLTKGHKEKVKEY 647

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
            + E+  +W+K +    +  +  +K  +   Y     +      I    A+ +   A+
Sbjct: 648 EKSESFQSWKKETTEEFNERISNIKENLSDEYTGLVKDKLNNYPIFMAIAEDIGYDAT 705


>gi|297157985|gb|ADI07697.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces bingchenggensis BCW-1]
          Length = 769

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 35/255 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI R         +  +TP ++  L  AL    D+     SP    T+ DP  GTGG
Sbjct: 187 YEFLIGRHLDANPR--QYTVTPPELAELMAALAGLADEPTGPLSPAP--TVLDPASGTGG 242

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L   +          +   +   + QEL+ +  A+       R   +   +     +  
Sbjct: 243 LLWAVL----------RTHSVATLYAQELDRDLAALTAL----RLALTHEGQGTQVRVHG 288

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G +L  D          +S+PPF ++ W  D+ A +         R+  G P  ++  + 
Sbjct: 289 GDSLRADALPQLAADAVVSHPPFNERNWGHDELAYD--------PRWEYGFPARTESELA 340

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    L      GG A +++  +             IR  LL    + A+VALP   
Sbjct: 341 WVQHALAHLR----DGGTAVLLMPPAVASRRSG----RRIRADLLRRGALRAVVALPAGA 392

Query: 398 FFRTNIATYLWILSN 412
                I  +LW+L  
Sbjct: 393 APPYGIPLHLWVLRR 407


>gi|163796256|ref|ZP_02190217.1| N-6 DNA methylase [alpha proteobacterium BAL199]
 gi|159178398|gb|EDP62940.1| N-6 DNA methylase [alpha proteobacterium BAL199]
          Length = 807

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 110/317 (34%), Gaps = 63/317 (19%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A    +I      + +   T     +  +YE   R            + TPR +      
Sbjct: 257 AVKARRIISILERLNVSVLTAEHDYLGQLYETFFRY---AGGNTIGQYFTPRHIASFGAD 313

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----VPHGQ 245
           LL    D +          + DPTCGTGGFL  AM  VA      +   +        G 
Sbjct: 314 LLGVSIDDV----------VLDPTCGTGGFLIAAMERVAREHQISRSEMVKLVSTRLIGF 363

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + EP T A+CVA M++R        D S ++ +G   +   +        L NPP+  K 
Sbjct: 364 DDEPITAALCVANMILRG-------DGSSSVHRGDAFTAPEYPIGTASVVLMNPPYPHK- 415

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                                   +    +  F+      L    + G R A V+  S L
Sbjct: 416 ------------------------QTDTPTEAFVERALEGL----SQGSRLAAVIPLSLL 447

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 S ++  R+ +L+N+ +EA + LP +LF        + +   +     +GK    
Sbjct: 448 VK----SNKASWRKAILKNNTLEAAIKLPDELFQPYAQPYTVIVYLRKGIPHPKGK---- 499

Query: 426 NATDLWTSIRNEGKKRR 442
                +  I N+G + R
Sbjct: 500 --RAFFARIENDGFRIR 514


>gi|159027726|emb|CAO89595.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1193

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 146/471 (30%), Gaps = 78/471 (16%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              L  +      I L    +  +     +E  +  F          + TPR +V     
Sbjct: 285 PEKLRTVVGYLESINLGETDLDSK--GRAFETFMGSFF---RGDFGQYFTPRQIVKFIVD 339

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------------------DCG 231
           +L    ++L          + D +CG+GGFL  A+  V                      
Sbjct: 340 VLPIQHNSL----------VLDTSCGSGGFLLHALEKVRTEADEYYPNYQTNPKEYNQHY 389

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGSTLSKD 285
            H          G E+  +   V    M+I        + +D  RD    I++       
Sbjct: 390 QHWHNFAQSNLFGIEINEQIARVAKMNMIIHDDGHTNVIAADGLRDSEDLIKR---TENK 446

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLA 343
            FT  RF + ++NPPFG   ++ + A   ++           P        S    +   
Sbjct: 447 GFTYNRFDFIITNPPFGSVIKQTEQAYISQYSFAMKAVDWLNPKSRTTERDSQSTEVLFL 506

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-- 401
            +       GG  A+V+    L N         +R  + E   I A+V++P   F  T  
Sbjct: 507 EQCHRFLKEGGYLAMVVPDGILTNSSL----QYVREGIEEKYRIVAVVSMPQTAFSATGA 562

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            + + +  L                      ++    ++ ++   DQ +         + 
Sbjct: 563 GVKSSVLFLKKH-----------------SQAVTESIQQAKLALQDQIK---------QG 596

Query: 462 GKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             + ++LD       R +K LR    +  L    L   EA   W+K      +  ++ LK
Sbjct: 597 NDYLKLLDKIENNKKRHLKELRGFDNAQNLSGKALTDSEAYKEWKKSVTAEYNDQIEALK 656

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKA-SKSFIVAFINAFGRKDPR 570
             +   Y     +      I    A+ +   A  KS     ++  G+K   
Sbjct: 657 ESLSDQYAEEKQKVIEDYPIFMAIAEDIGYDATGKSTNNNELDFIGKKLKE 707


>gi|290579889|ref|YP_003484281.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus mutans NN2025]
 gi|254996788|dbj|BAH87389.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus mutans NN2025]
          Length = 661

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 114/347 (32%), Gaps = 55/347 (15%)

Query: 128 EKAGLLYKICKNFSGI-------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + + L     K+F+          L  ++  +  +   Y   +  +     +     +TP
Sbjct: 275 KNSTLGKTPIKHFTEFLYKSIYQSLRYNSSAEDYLGRFYGEFMS-YSGGDGQNLGIVLTP 333

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIP 237
           + +  L   L+                 ++DPTCGT GFL  AM+ +   AD     +  
Sbjct: 334 KHITELFCDLV----------DLKPTDKVFDPTCGTAGFLIAAMHDMLTKADSDYQREQI 383

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G E +     +    M++R        +     Q  S         K+ +  + 
Sbjct: 384 RKHQLFGIEEQSYMFTIATTNMILRGDGKSNLENQDFLRQNPS-----KLQLKQCNVGMM 438

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+    + + +  E                           HL N L      G +A 
Sbjct: 439 NPPYSMGSKTNTELYEINFT----------------------EHLLNSL----VEGAKAV 472

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +++  S          E E ++ +L +  +E ++ L  + F+       + + +      
Sbjct: 473 VIVPQSTF--TGKTKFEKEAKQNILNHHTLEGVITLNKNTFYGVGTNPCIAVFTAGIPHH 530

Query: 418 RRGKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + + IN   D +   ++ G        D+++ +LD++  R   +
Sbjct: 531 PERECKFINFENDGFEVSKHIGLVETATAKDKKQHLLDVWFDRTEAE 577


>gi|307566382|ref|ZP_07628821.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
 gi|307344959|gb|EFN90357.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
          Length = 237

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 36/226 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54
           MT  T +   L   +W  A  L G     DF   +L F  L+ L                
Sbjct: 1   MT--TENKDELGKTLWDIANSLRGAMMADDFRDYMLSFLFLKYLSDNYVAFAKKELGGDY 58

Query: 55  ----VREKY---------LAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTN---- 95
               ++E Y         L +  +  D++ F        +      Y   ++        
Sbjct: 59  PVIDIKEAYAVGVNSPLQLWYENNPQDIDLFEAQMRKKIHYVIKPHYIWDSIAEEARTQS 118

Query: 96  -----TRNNLESYI--ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                       YI   SF  + K +F + + +S       A     + K  + I+    
Sbjct: 119 DSLLENLEKGFKYIEEESFDTSFKGLFSEINLNSEKLGKNYAERNTLLAKVINKIKEGIS 178

Query: 149 TVP--DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            +      + + YE+LI +F +   + A +F TP+ +  + + ++ 
Sbjct: 179 ELDTTTDALGDAYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVT 224


>gi|21221543|ref|NP_627322.1| hypothetical protein SCO3104 [Streptomyces coelicolor A3(2)]
 gi|10241787|emb|CAC09545.1| hypothetical protein SCE41.13c [Streptomyces coelicolor A3(2)]
          Length = 679

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 106/305 (34%), Gaps = 52/305 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             YE L+ R         +  +TP  +  L   L             G  RT+ DP CGT
Sbjct: 167 KAYEFLLGRHLDANPR--QYTLTPDPLADLMAELA------------GPARTVLDPACGT 212

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A              P    +GQE +P   A+                D +  I
Sbjct: 213 GSLLRAAA---------ATTRPGQELYGQESDPALAALTAL-------RLALSTDATVRI 256

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
             G +L  D  TG R    L +PPF ++ W  D+ A +         R+  G P  ++  
Sbjct: 257 AAGDSLRADARTGLRADAALCHPPFNERNWGHDELAYD--------PRWEYGFPARTESE 308

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H   ++      GG   +++  +             +R  LL    + A++ALP 
Sbjct: 309 LAWVQHALARVR----DGGTVVVLMPPAAASRRSG----RRVRADLLRRGALHAVIALPV 360

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                 N+  +LW+L   +    +  V L +        R     R +     R  +LD 
Sbjct: 361 GAAPPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDA 415

Query: 456 YVSRE 460
           + + +
Sbjct: 416 WTAFD 420


>gi|282918167|ref|ZP_06325909.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus C427]
 gi|282317958|gb|EFB48325.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus C427]
          Length = 207

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 26/199 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 10  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 69

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 70  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 128

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 129 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 188

Query: 156 SNIYEHLIRRFGSEVSEGA 174
            + YE LI RF +   + A
Sbjct: 189 GDAYEFLIGRFAATAGKKA 207


>gi|260061351|ref|YP_003194431.1| type I restriction-modification system, M subunit [Robiginitalea
           biformata HTCC2501]
 gi|88785483|gb|EAR16652.1| type I restriction-modification system, M subunit [Robiginitalea
           biformata HTCC2501]
          Length = 894

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/466 (13%), Positives = 149/466 (31%), Gaps = 87/466 (18%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L  ++       +   E+F  S +           ++ K    + L+   +P  + +  
Sbjct: 83  ELPDFLRDTYRIFERRIENFQLSESK----------ELLKKLEDLYLN---LPPALYAKA 129

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+ +    V     + M P ++      +           +    + +++P  G G 
Sbjct: 130 FETLLEKIVKGVERKRGEIMLPSEIAKFLINI----------SNLHGGKRVFNPFAGLGS 179

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQ 277
           F                    +  HGQE++  T AV    +     L +     +   + 
Sbjct: 180 FGI------------FLNDSTINYHGQEIDDLTWAVTTLRLDAHDKLNNSSFEKVDSFLS 227

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             +T         R+   +SNPPFG +  K +   EK++K  E                 
Sbjct: 228 WPNTN--------RYDLIISNPPFGLRLGKHQQTTEKKYKTVE----------------- 262

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
               L  +        G+   ++ +  L++         +R+ L+E DL+EA+++ P  L
Sbjct: 263 --QFLLTQGIELLTDCGKMIAIVPNGLLYSKSNKG----VRQRLIEEDLVEAVISFPGGL 316

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F ++N    + ++S  K  ER G V      +    + N   +  +        I   ++
Sbjct: 317 FLQSNSPFSVIVISKTK--ERPGSVLFFPGENYAQPLNNGHYQLML------EDITKDFL 368

Query: 458 SR----ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            R    +    SR        + ++++         +     +       + ++  +   
Sbjct: 369 RRSVSIQTSDHSR---TDEPPFNQLEID-----KDSIKSQDYSLDHERYRFEEIEGIELQ 420

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
             +++ K     +       +     ++    K    +  + F   
Sbjct: 421 EIVEVEKGYQSGLIYVSSIFNRNDSFLEKFFRKMGFSQLGEPFDKE 466


>gi|196233547|ref|ZP_03132389.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196222399|gb|EDY16927.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 363

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 111/283 (39%), Gaps = 28/283 (9%)

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G+ L++   A  L+      GRAA+V+++S      A   E++IRR L+E +LI  ++ L
Sbjct: 2   GNYLWINLFATSLKP----TGRAALVMANSA---SDARHSEADIRRKLIEENLIYGMLTL 54

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+++F+   +   LW     KT++R   +  I+A +++T I    ++      +    I 
Sbjct: 55  PSNMFYTVTLPATLWFFDRAKTDDR---ILFIDARNVFTQIDRAHREFSTAQVNNLAIIS 111

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            ++  R   +F  ++D R F +   ++L   +    +    L  LE     + +  L + 
Sbjct: 112 RLHKGRRE-EFVELVD-RYFAFGMERLLENRKRVQPVSGQLLEVLEDAAGKKAVGELVKQ 169

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD----- 568
           +            Y  G  +S   E  K N+A+    +A   F         + D     
Sbjct: 170 WAGLGKLEARYDQYRKGAGDSAPIE--KRNKAQHQLREAFDPFFTGLHEGLKQLDRIVRQ 227

Query: 569 ---PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS 608
               +A+           D             ++++   REV 
Sbjct: 228 HEKEQAEAAQKEGKRGSTDRQTR-----ALKTALEE-LHREVK 264


>gi|300811623|ref|ZP_07092101.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497391|gb|EFK32435.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 203

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 18/209 (8%)

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     +++     L    +  G  A++L +  LF   A   E EI+++L E   
Sbjct: 1   MLPPKSKADYAYVLRGLQHL----SEDGTMAVMLPTGALFRSAA---EREIQKYLSEKQK 53

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
             A++ALP      T I T L I   +K+     ++  I+A+           K+  + +
Sbjct: 54  THAVIALPQGARNYTAIYTVLLIFKKKKS----DQILFIDASRDGVK-NATRLKQNFLTE 108

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   +IL  Y +RE   ++SR++              P      +D     +++ + T  
Sbjct: 109 EGFTKILHTYRNREEVDRYSRLVSLDEIRENDYNWNIP----CYIDTFSEKKIDVEATMS 164

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            LS   Q       K M++ +  +   E+
Sbjct: 165 SLS-AKQKVIETSKKEMIELLNKFDTPEA 192


>gi|329941157|ref|ZP_08290436.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045]
 gi|329299688|gb|EGG43587.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045]
          Length = 680

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 101/302 (33%), Gaps = 52/302 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+ R         +  +TP  +  L   L             G  RT+ DP CGTG 
Sbjct: 169 FEFLLGRHLDANPR--QYTLTPAGLADLMAELA------------GPARTVLDPACGTGA 214

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                 P    +GQ+  PE  A+    + +                 
Sbjct: 215 LL-----------RALGRAPEQSLYGQDAAPELAALAALRLALH-------TRALVRAAA 256

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L  D     R    L +PPF ++    ++            R+  GLP  ++  + +
Sbjct: 257 GDSLRADAHESLRADVVLCHPPFNERNWGHEELAYD-------PRWEYGLPARTESELAW 309

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H   +L+     GG A +++  +             IR  LL    + A+VALP    
Sbjct: 310 VQHALARLK----DGGSAVLLMPPAAASRRSG----RRIRADLLRRGALRAVVALPAGAA 361

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               +  +LW+L        + +V L++        R     + +     R  +LD +  
Sbjct: 362 PPHGVPLHLWVLRRPDRAPAQPRVLLVDTGAAAAEGRGGPDWQAV-----REAVLDAWHE 416

Query: 459 RE 460
            +
Sbjct: 417 FD 418


>gi|330971618|gb|EGH71684.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 136

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC L PT+  V ++  A  G 
Sbjct: 4   ENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLTPTKDEVIKQTFAQEGR 63

Query: 66  NIDLES--FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +     ++ AG  F+N S  +L TL  T T  +L SY+ SFS +A+ IFE F F   
Sbjct: 64  PDTVREMILLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFEDF 123

Query: 124 IARLEKAGLLYK 135
           + +L  A LLY+
Sbjct: 124 VQQLATANLLYQ 135


>gi|282907752|ref|ZP_06315594.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282328657|gb|EFB58928.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 200

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 26/199 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGA 174
            + YE LI RF +   + A
Sbjct: 182 GDAYEFLIGRFAATAGKKA 200


>gi|293189376|ref|ZP_06608099.1| ribosomal protein L11 [Actinomyces odontolyticus F0309]
 gi|292821839|gb|EFF80775.1| ribosomal protein L11 [Actinomyces odontolyticus F0309]
          Length = 279

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 66/243 (27%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   V     H K    L   G E   +T  +    + +  L  D         +Q
Sbjct: 1   MFVQCAKFVE--CHHEKASRKLSLFGTEKTGDTIPLAKMNLPLHGLSGDI--------RQ 50

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            ++ S+D                                            K  +G+ ++
Sbjct: 51  DNSYSED------------------------------------------PYKADNGNFIW 68

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L    +  GRA  V+++S       G  E +IR+ L+E+  ++ +VA+  + F
Sbjct: 69  IQQFYAAL----SAKGRAGFVMANSA---CDTGHSEKDIRQRLIESGTVDVMVAVGPNFF 121

Query: 399 FRTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILD 454
           +   +   LW L   K    R   V  I+A  ++  I    +  R    +Q      I+ 
Sbjct: 122 YTVTLPVTLWFLDKAKLGTAREDTVLFIDARHVFYQI---DRAHRDFTAEQIEFISNIVR 178

Query: 455 IYV 457
           +Y 
Sbjct: 179 LYR 181


>gi|282860339|ref|ZP_06269407.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
 gi|282586837|gb|EFB92074.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
          Length = 811

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 100/595 (16%), Positives = 190/595 (31%), Gaps = 82/595 (13%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           L   R  +R        + I L    +        T+ +    L        +  Y    
Sbjct: 179 LLEKRGLIRSDQSFKEMTKILLVKMNEEKRAKNGQTNRFQKEVLDKLAKAEEVTIYDEFI 238

Query: 108 S--DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           +    A   +  +  S+   ++   G L K+ +             D +   +YE  ++ 
Sbjct: 239 NLFQEALVAYPIYSNSTETLKIIDHGCLLKVIEELE--PWSFIGTGDDIKGAVYEIFLK- 295

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             S +    + + TPR++V                  P +   + DP CG+GGFL  +  
Sbjct: 296 --STLRGDFDQYFTPREIVDFIVK----------YADPKIGDKILDPACGSGGFLIQSFL 343

Query: 226 HV---------ADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           +V         ++     K   ++     G E + + H +    +++         D   
Sbjct: 344 YVNQKIIDTPCSELDRKLKFNELIDKCLWGGEADEDLHVLAKINLIMHG-------DGYN 396

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-D 333
           NI QG +LS        F+  L+NPPF   +               L ++  G  + S +
Sbjct: 397 NIYQGDSLSNKKLPNDTFNLILTNPPFTIPYT----------FKDILNKYEMGQNRESQE 446

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+      L+     GG   IVL    L            R+WLL    I   ++L
Sbjct: 447 LDILFVEKCIRALDAKA--GGEMYIVLPEGLL----NLPYYQNFRKWLLGKCYITLSISL 500

Query: 394 PTDLFFRTN---IATYLWILSNRKTE--ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           P   F         T +  L  +  +   +   V L  A ++   +     K+       
Sbjct: 501 PEGAFIPFGKSVSKTAILGLRKKNQQGSNKPDFVFLGTAKEVGYEVGKSVYKK------- 553

Query: 449 RRQILDIYVSRENGK-FS--RMLDY----RTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             +   ++ SR +   FS  RM +            I   R +  S++++   +  L   
Sbjct: 554 INKNDFVFFSRASEDVFSDVRMTNNGGECTWIKQDNITNYR-IDSSYLINTIDIQNLH-- 610

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
             +  L  L +           ++   Y + E           +   K+K  +     ++
Sbjct: 611 KKFTSLKRLDKVCRFRNKSITPKKDEDYFYLEIPDVSPDTGTISNIRKLKGGEIGSSFYV 670

Query: 562 N-----AFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES---IQDYFVREVS 608
                 A+ R +PR + V  +  E        E   +  L+    I +Y +  + 
Sbjct: 671 AHGGDLAYCRINPRKNRVFIIPKEIDTVLISKEAYVIELLQESDIISNYVLSTIL 725


>gi|84626048|gb|ABC59617.1| RM-CspCI [Citrobacter sp. 2144]
          Length = 632

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 139/428 (32%), Gaps = 79/428 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
           T ++  +         V+E +L      +D  S  +    +                T  
Sbjct: 213 TFIKTFDAL---PAEDVQEAWLTAIKKELDKASIPQAKKDTMLQPY-----------TTI 258

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            +   +          + D  F   I R+     ++     F   +         V+   
Sbjct: 259 AVNPNLGKPDSKTAKEYPDGVFKEIITRIADN--VWPYINVFHDFD---------VVGQF 307

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y   + ++ +   +     +TPR V  L + +           +      + D   GTGG
Sbjct: 308 YGEFL-KYTAGDKKALGIVLTPRHVAELFSLIA----------NVNPKSKVLDICAGTGG 356

Query: 219 FLTDAMNHVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           FL  AM H+       K    +      G E  P+  A+  + M++R    D + +L + 
Sbjct: 357 FLISAMQHMLKKAVTDKERNDIKQNRLIGIENNPKMFALAASNMILRG---DGKANLHQA 413

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
               + +        + +  + NPP+ +                            SD  
Sbjct: 414 SCFDNAVIA-AVQKMKPNVGMLNPPYSQS--------------------------KSDAE 446

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +  L  +   L+    GG   AIV  SS +           +R  L++   ++A++++P 
Sbjct: 447 LHELYFVKQMLDTLTPGGVGIAIVPMSSAISPNP-------MREELMKYHSLDAVMSMPQ 499

Query: 396 DLFFRTNIATYLWILSNRKTEER-RGKVQL-INATDLWTSIRNEGKKRRIIN-DDQRRQI 452
           +LF+     T + +       E+   K        D +   +++G+        D R + 
Sbjct: 500 ELFYPVGTVTCVMVWIAGVPHEQMSKKTWFGYWRDDGFVKTKHKGRIDMNGTWPDIRDRW 559

Query: 453 LDIYVSRE 460
           +++Y +RE
Sbjct: 560 IEMYRNRE 567


>gi|290559136|gb|EFD92499.1| N-6 DNA methylase [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 619

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 138/429 (32%), Gaps = 65/429 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  E   E   +   EK      S   + S + ++       +  +   +  ++  +
Sbjct: 164 LFLKTAEDINEILHAGGIEK-----DSRAKVVSALLLSLLDDTPPNINATPKVLVSDINS 218

Query: 99  NLESYIASFSDNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMS 156
            +++ +   S      +   +  SS    ++    + K  +  + + +         V+ 
Sbjct: 219 RVKNTLERESKIEMFDYIRLNLPSSADNHIKFKTAVIKTLRELNDLNIKSAMNSGTDVLG 278

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             YE  ++      ++     +TPR +      ++          S      +YDP CGT
Sbjct: 279 KFYEVFLKY--GNGAKEIGIVLTPRHITQFVAEVM----------SLRPEDIIYDPCCGT 326

Query: 217 GGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPR 269
           GGFL  A + +     +   +       G +      ++ +  M+ R       +E +  
Sbjct: 327 GGFLVAAFDEIKRNYKNEVDVFKKNNIFGVDQSDAVVSLAIVNMIFRGDGKNNIIEGNSL 386

Query: 270 RDLSKNIQQGST------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                +   G         +      +     L NPPF  K        EKE+K  +   
Sbjct: 387 VKFLHSRVVGDHLSAFYSDTPSATGKEPVTRVLMNPPFPTK-----KNDEKEYKFVDQA- 440

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                                 L+    GG     +L S   ++    +     RR LLE
Sbjct: 441 ----------------------LKQMKEGG-----LLFSILPYSTTVKASRRNWRRRLLE 473

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           N+ + A++ LP DLF+ T + T    +      ++   V  +   +     +   +   +
Sbjct: 474 NNTLLAVMTLPEDLFYPTGVVTLGIFVKKGIPHDKNRNVLWLRTLNDGLLKKKGKRLPNL 533

Query: 444 INDDQRRQI 452
              +  ++I
Sbjct: 534 RAKNDLKEI 542


>gi|308178691|ref|YP_003918097.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307746154|emb|CBT77126.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 621

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 124/359 (34%), Gaps = 58/359 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y   + ++     +G    +TP+ V  L   +     D            + D 
Sbjct: 298 DVVGAFYGEFL-KYTGGDGKGLGIVLTPKHVTELFALIANVSKD----------DKVLDI 346

Query: 213 TCGTGGFLTDAM-NHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
             GTGGFL  +M   +    +  ++  I      G E  P  +A+  + M++R    D +
Sbjct: 347 CAGTGGFLISSMVKMIQTATTEAEVEDIKKNRLIGVEQSPSMYALGASNMILRG---DGK 403

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +L +      T         + +  + NPP+ K                          
Sbjct: 404 ANLHQGSCF-DTAISAAVKKNKANVGMINPPYAK-------------------------- 436

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             +   +  L  +   L+    GG   AIV    P+    A S        LL+   +EA
Sbjct: 437 --TKEDLHELRFVEQMLDSLAPGGTGIAIV----PVTCATAPSVHEN---NLLKKHTLEA 487

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTSIRNEGKKRRIIN-D 446
           ++++P ++F+   + T + + +   + E+   K        D +  ++N G+  R     
Sbjct: 488 VMSMPPEVFYPVGVITCIMVFTAGVSHEKNDRKTCFGYWRDDTFIKVKNLGRVDRHRTWA 547

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF-ILDKTGLARLEADITW 504
             R + +D Y +RE      ++  R            ++  +  LDK+   ++  D   
Sbjct: 548 ATRDRWVDTYRNREVNPGEAVMQ-RVGADDEWVAEAYMKTDYSKLDKSDFEKVLFDYAL 605


>gi|313676045|ref|YP_004054041.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126]
 gi|312942743|gb|ADR21933.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126]
          Length = 620

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 106/325 (32%), Gaps = 49/325 (15%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             N K  F  F              +      F  I++     P  ++ + ++ L+    
Sbjct: 72  HPNIKDHFGSFQLDD--------ISVLYALNKFQEIDISNS--PAHIIGDAFQTLVG--- 118

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
             +      F TP+ VV     LL          SP    T+ DP CGT GFL +++  +
Sbjct: 119 PNLRGDKGQFFTPKSVVSSMVKLL----------SPKANHTICDPACGTAGFLIESITQI 168

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           +   S +         G E +        A + I    +    + +    +   L K   
Sbjct: 169 SKNISFNG-----RLIGIEKDDFLANTANAILEIYSKSNFEVINSNSLDIENDKLKK--- 220

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPKIS------DGSMLF 338
              +    ++NPPFG K    +  + K++  G    F        K S         +LF
Sbjct: 221 LLGQIDLVVTNPPFGAKIGVKEKKILKQYDFGHSWMFSKTESQWIKTSQILKEQSPQLLF 280

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L      L+     GG+  IVL      N   G     IR     N  I  ++  P  LF
Sbjct: 281 LELCFKLLK----KGGKCGIVLPEGIFGNKSLGYVWDYIR----NNGKILGMIDCPRTLF 332

Query: 399 F-RTNIATYLWILSNRKTEERRGKV 422
              T++ T +           + KV
Sbjct: 333 QPSTDVKTNILFFEKSSNTSTKFKV 357


>gi|167010572|ref|ZP_02275503.1| hypothetical protein Ftulh_07629 [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 322

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 105/287 (36%), Gaps = 46/287 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNT 96
             L+ L         ++  + +      +  E +     ++ +   + +   L   + +T
Sbjct: 32  LFLKFLNDY--ENEKSLEAELIGEDYIFVLDEKY----RWNIWAAPKDADGKLDVINADT 85

Query: 97  RNNLESYIASFSDNAKAIFEDFD-------------FSSTIARLEKAGLLYKICKNFSGI 143
            ++L   I          F+  D             F      +     L  +      +
Sbjct: 86  GDDLLDIINKELFPYLKSFKSIDEDVKSIKYKIGAIFEFLDNCIASGHTLRDVINEIDEL 145

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             +        +S IYE+L++  GS+      +F TPR +V     ++          +P
Sbjct: 146 NFNKKE-DLYQLSQIYENLLKEMGSDGGNS-GEFYTPRPLVKAIVDVV----------NP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGML 260
              +T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M+
Sbjct: 194 QAGQTVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNKETFFGKEKTPLSYVMGVMNMI 253

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKK 304
           +  +        S NI + +TL KD   L    R++  L+NPPFG K
Sbjct: 254 LHGI-------TSPNINKANTLVKDIRSLEEKDRYNIILANPPFGGK 293


>gi|313892186|ref|ZP_07825779.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E]
 gi|313119324|gb|EFR42523.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E]
          Length = 594

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/464 (17%), Positives = 154/464 (33%), Gaps = 48/464 (10%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN-IYEHLIRRFGSEVSEGAEDF 177
            F +    LE     +   K +  I      V +  +   I E   +           + 
Sbjct: 61  KFLNADTNLEYVLKEFVSEKLWKDIRKDILNVSNDTLKKVILETTDKYLQMVSLRKYAEN 120

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V L   +L          +      + D   G G F+T A              
Sbjct: 121 STPDTLVDLVIKIL----------NINPGDKVCDICGGIGNFITKAYLKEKKA------- 163

Query: 238 PILVPHGQELEPETHAVCVAGM----LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              + + +E+   T A+ V  +    L+   + +               +  +   K F 
Sbjct: 164 ---IYYSKEIN--TQAISVMEIRVDVLLHD-DKEKNIYTEAGNIFDLFFNDRVKNDKFFD 217

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
               N P+  +   DK +V+       +    PG+ K +    LF + + + L+      
Sbjct: 218 KIFGNYPW--RIFIDKYSVKNIDFLKYIDSKVPGILKRNMSDWLFNILMIHMLK----DT 271

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A  ++++  ++N  +       R++ L N LIEAI+ALP +LF  T+I T L + S+ 
Sbjct: 272 GKAVGIMTNGSIWNQMSDC--KNARKYFLSNGLIEAIIALPANLFKSTSIPTVLIVFSHG 329

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                  K+++I+AT +      E  +++I + +    I   Y+  E  + S  ++    
Sbjct: 330 NK-----KIKMIDATSICV----ENMRQKIFSTENIETIYKAYL--EETENSIFVNVEDI 378

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                  + P R    +      + E       L         ++ K    +   Y +  
Sbjct: 379 LKDEELNIHPKRYLTHITLPENGK-ELKTVLTDLYRGSNISAKELDKLKTDKPTLYRYVM 437

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
                +   +E      K  +      I+       +  PV   
Sbjct: 438 LQNINNGMIDEELPYLSKIDEKHEKFIISNRSLIISKTGPVFKS 481


>gi|148654897|ref|YP_001275102.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148567007|gb|ABQ89152.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 725

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 64/258 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +++ R  +        + TPR +V L TAL                + + D  CG+GG L
Sbjct: 83  YILFRLDNMRP--GGQYPTPRHIVRLMTALAETTK-----------KVVADFACGSGGLL 129

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             +                    G ++ PE   +  A + +   + D R   +  +    
Sbjct: 130 IHS--------------QGSSLVGVDISPEWARIARANLQLHEKQGDIREGNALRV---- 171

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                  + +RF   + NPPFG+K   D                       +      + 
Sbjct: 172 -----AKSDERFERIVMNPPFGEKIASDFG---------------------TRSETALIN 205

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF- 399
              N L       GRAA++     LF+    S E ++R+ L+++  +EAI+ LP D F  
Sbjct: 206 LALNHLAT----NGRAALLAPGGVLFSNS--SAEEKLRQRLVDDVTLEAIITLPEDAFQP 259

Query: 400 RTNIATYLWILSNRKTEE 417
            + + T+L ++ N+K  E
Sbjct: 260 YSTLTTHLLLIENKKPVE 277


>gi|313669543|ref|YP_004049968.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156740|gb|ADR35415.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 597

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 124/349 (35%), Gaps = 53/349 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                     +F  P ++V L   +                 ++Y P   +G  L   + 
Sbjct: 114 LSERQGSKFGEFAQPEELVDLLVKIA----------DQDNPESVYIPFT-SGTLLAGVL- 161

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                            + + +   T  + ++  L           ++  I + + +  +
Sbjct: 162 ---------GKKANQKLYIENIYLNTVVLELSRYLDHV---SMDYAINNPIYEPTFVDLE 209

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHL 342
             T  +F   ++ PPFG          EKE  N    R+           +G +  + H 
Sbjct: 210 TRTLNQFDVSVAIPPFGGI------KAEKEIANIRWDRYRVADTLNGSSRNGEIALIEHT 263

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            ++        GRA  V+S   LF   A      IR  LL N  IEA++ LP +LF  + 
Sbjct: 264 LSQ------TTGRAIFVISHGLLFRSAADWM---IREQLLANKQIEAVITLPGNLFIHSV 314

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + IL+N+ + +    V  I+A+ +   +     K+ ++ D     IL +   RE+ 
Sbjct: 315 IPTAILILNNQCSYQ---DVLFIDASKMVKRV----GKKNVLTD--LETILQLLEKRESV 365

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            + S ++ Y+     +   L P R    +D   +  +       KLS L
Sbjct: 366 EEVSALVSYKELNANQ-NSLNPSRYIVSVDDQNIQNILEAHDTEKLSNL 413


>gi|254168930|ref|ZP_04875770.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|197622194|gb|EDY34769.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
          Length = 760

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 57/352 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGA 174
           FS              + K    I+   +          ++   Y   +R   +   +  
Sbjct: 246 FSFMKTHTTLTTDKEFVIKLIDDIDEKLNNFIKTYKYYDILGKFYVEFLRY--ANSDKKL 303

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
              +TP  +  L   L     D++          + D  CGTGGFL  AM  + +  S +
Sbjct: 304 GIILTPPHITELFCELAEITKDSI----------VLDNCCGTGGFLISAMKKMIEKASSN 353

Query: 235 ----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K        G E +   +A+ +  M++     D + ++        T+ K++    
Sbjct: 354 SKKIKEIKEKQIVGIEYQDHIYALAITNMIVHG---DGKTNIYHGSCFDETIKKEVKEKF 410

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + +  L NPP+          +EK+  N                       + N L +  
Sbjct: 411 KPNVGLLNPPY---------KIEKDDTN-------------------EFKFVLNNLSMLE 442

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            GG   AI+     L        + E ++ LL+N  +EA++++P DLF+   + T + ++
Sbjct: 443 PGGKCVAILPMRCVLAT---DGEDYEFKKKLLKNHTLEAVMSMPDDLFYPVGVVTAVIVI 499

Query: 411 SNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQI-LDIYVSRE 460
           +  K      KV      D  +  I+++G+        Q ++  +  Y+++E
Sbjct: 500 TAHKPHPDNKKVWFGYFKDDGFIKIKHKGRVDYYNRWPQIKETWVSAYINKE 551


>gi|297157211|gb|ADI06923.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 706

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 91/256 (35%), Gaps = 40/256 (15%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G   ++TPR +  L   LL +   A          ++ DP CGT               +
Sbjct: 175 GTGTYLTPRPLAALMARLLTESAGAFP-------ASVLDPACGT-----------GSLLA 216

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     HGQ++     A     + +         + + ++  G +L  D F G   
Sbjct: 217 AAASAGASELHGQDVLVAQAAQAAVRLRLN------APEAAISVHTGDSLRSDAFKGLTA 270

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L NPP+G +     D            R+  G+P   +  + ++ H    L      
Sbjct: 271 DAVLCNPPYGVRDWGHDDLAYD-------QRWAYGVPPKGEPELAWVQHCLAHL----TP 319

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRA +++  +             IR  L+ +  + A+V+LP       +I  +LW+L  
Sbjct: 320 RGRAVLLMPPAVAERTAG----RRIRAQLVRDGALRAVVSLPQGAATPLHIGLHLWVLER 375

Query: 413 RKTE-ERRGKVQLINA 427
              + E  G V L++A
Sbjct: 376 PDPQAEAPGTVLLVDA 391


>gi|260642159|ref|ZP_05859273.1| putative type I restriction-modification system, M subunit
           [Bacteroides finegoldii DSM 17565]
 gi|260623398|gb|EEX46269.1| putative type I restriction-modification system, M subunit
           [Bacteroides finegoldii DSM 17565]
          Length = 368

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 123/360 (34%), Gaps = 88/360 (24%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +    YE ++    + + + A  F TPR+++     +L           P     + DP 
Sbjct: 1   MKGTAYETIVS---NTLKQEAGQFFTPRNIIKCMVEML----------DPDQNTRVLDPA 47

Query: 214 CGTGGFLTDAMNHVADCGSHH-----------------------KIPPILVPHGQELEPE 250
           CG+GGFL   ++HV    + +                       +     +  G + +P+
Sbjct: 48  CGSGGFLVTVLDHVRHKITRNLYPELDEVRLAARVNTPEVDELVRNYAEKMIFGFDFDPD 107

Query: 251 THAVCVAGMLIRR-LESDPRRDLSKNIQQGS-----------------TLSKDLFTGK-- 290
                   M++     S+     S +  QG                  +  KD   G   
Sbjct: 108 LKKAARMNMVMAGDGHSNIFNINSLDYPQGDKPDRSLIAEAVNESIKHSNDKDFPFGTSE 167

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F    +NPPFG K E D +   +   N             +   +LF+    N 
Sbjct: 168 DNAQGKFDMIFTNPPFGAKVEVDVEIARRYKLN------------SNAPEILFIEACYNF 215

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIA 404
           L+     GG+  IVL    L N    S    +R+W+L +  + A V LP + F     + 
Sbjct: 216 LK----PGGKMGIVLPDGILGNPNTES----VRKWILGHFKLLASVDLPVETFLPQVGVQ 267

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-----IINDDQRRQILDIYVSR 459
             L  L  +  EE    +   +  D++ +I  +  K R        D+   +IL  +  +
Sbjct: 268 ASLLFLQKKTAEELLIPLDKED-YDVFMAIVEQVGKDRRGVPIYKKDEDGAEILFAHEKK 326


>gi|251773333|gb|EES53882.1| probable N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 796

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 137/416 (32%), Gaps = 48/416 (11%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFSSTIARLEK 129
           F KV       T E     +GS  T   + + +       +   +D    F  T   L  
Sbjct: 100 FAKVVDERNTPTGEPRSFQIGSNETVAAVSNRVHRLFQ--RGCLDDPTIFFPDTRITLPD 157

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              ++ + K    + L    V +  +   +E+    FGS        + T R +     +
Sbjct: 158 -KKIFDVVKILQDVSLMGSDVDN--IGAAFENF---FGSIFRGELGQYFTMRQIARFTVS 211

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-------------ADCGSHHKI 236
           +L    +            + DPT G+GGFL +A+  V                      
Sbjct: 212 MLEITHEDF----------VLDPTAGSGGFLLEALLQVWHGVDTKFHGQSDQQIIRTKND 261

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L  +G E+      +C   +L+              +    T  +     ++F   +
Sbjct: 262 FALLRVYGIEIHDILSRICKINLLLHHDGHTNIEGDRSCLDTYFTKPRLRLCFEQFSKVV 321

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPPFG + E+  + +  E+ + E      G  K+          +  +       GG+ 
Sbjct: 322 GNPPFGDEVEEGDEDLLGEN-SLENFEIAKGRQKVP-----SEHVILERAIDFLEPGGQL 375

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI--ATYLWILSN-R 413
            +VL      N    S    +R +L +   IEAIV+LP   F ++     T +       
Sbjct: 376 GLVLPDGLFNNQGELSNCPRVRSFLAKQGFIEAIVSLPDFAFRKSGAQNKTSILFFRRFT 435

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ-ILDIYVSRENGKFSRML 468
           K ++      L +A      +  E  +   I D      I  +Y S E  +  R+ 
Sbjct: 436 KLQKHTFDQLLEDA----IEMLKETMEGVSIPDQNEETAIGAVYRSGEFAEH-RVF 486


>gi|264677645|ref|YP_003277551.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208157|gb|ACY32255.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 142

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              + +FIW  A+D L   F    +  VILP  +LRRL+C LEP++ AV E+        
Sbjct: 6   QNKIVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEEVRFQREDA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +++D     + +GY FYNTS ++L +L    +    NL++Y+  FSDN K I E FD 
Sbjct: 66  EMADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLGGFSDNVKEIVEKFDL 125

Query: 121 SSTIARLEKAGLLYKI 136
            + I ++ + G   + 
Sbjct: 126 RNQIRKMVQHGRAARR 141


>gi|149391960|emb|CAL68657.1| restriction-modification enzyme [Pseudomonas putida]
          Length = 1289

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 98/571 (17%), Positives = 184/571 (32%), Gaps = 44/571 (7%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L +L   +E               S+ DL   ++    S  N       T  + N  +
Sbjct: 272 LFLCKLVDEIENPDDLKFYWKGVAYDSHFDLMDRLQQLYQSGMNKFLGEDITYINQNDVS 331

Query: 99  NLESYIASFSDNAKA----------IFEDFDFS-----STIARLEKAGLLYKICKNFSGI 143
           N   +I    D  +            F + DFS     +     + A +L K+ + +  I
Sbjct: 332 NALRFIRQNPDATQRAVWNLFIQQKFFTNNDFSFIDVHNERLFYQNADVLLKLLQMWQDI 391

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L      ++ + +++E  + +    V +    F TP  +      L+  P ++L +++P
Sbjct: 392 RLTNANGHNQFLGDMFEGFLDQ---GVKQSEGQFFTPMPICRFI--LMSLPLESLVRDNP 446

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAG 258
                + D  CG G FLT+    +      HK       +     G E E     V    
Sbjct: 447 TPPMAI-DYACGAGHFLTELALQLQPLLEQHKPQANPAEYHKSMVGIEKEYRLSKVAKVS 505

Query: 259 MLIRRLESDP--RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +   +       D   N  +     +D      F   ++NPP+  +   +    E+  
Sbjct: 506 AFMYGQQGIQVCYGDGLVNSHEAFPDIRDGH----FDLLVANPPYSVRGFLETLPEEERK 561

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                          S            + +     GG AAI+L S+ L NG  GS  + 
Sbjct: 562 AYSLADTINDAETANS-----IETFFVERAKQLLKSGGVAAIILPSAILSNG--GSTYTR 614

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            R  LL+   I AI    +  F +T   T    L  + T+    +       + +     
Sbjct: 615 AREILLQYFDIVAIAEFGSGTFGKTGTNTVTLFLRRKPTQPDTAEHCRERVEEWFKGCAA 674

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGL 495
             +K+    D    +    +++     +  +L     G  +  +  +P    F    T L
Sbjct: 675 SKRKQATYKDGHLIEQYCAHINVPLADYQSLLRGEAEGSWKQQEHFQPYHDKFDKS-TEL 733

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
             L     ++ L+   Q+  +        Q         F   S ++N    ++  +   
Sbjct: 734 VNLRKQKKFKALNKAEQAAEIAKRYLGYVQTIERDKLYHFCLASDQTNPVLIIRSPSGTK 793

Query: 556 FIVAFIN---AFGRKDPRADPVTDVNGEWIP 583
            I  F+    +  + D     + DV+G+ I 
Sbjct: 794 EIKQFLGYEWSSAKGDEGIKLIEDVSGKHIT 824


>gi|322510790|gb|ADX06104.1| putative type I restriction modification N-6 adenine specific
           methyltransferase domain protein [Organic Lake
           phycodnavirus 1]
          Length = 184

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 23/197 (11%)

Query: 226 HVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +     H K+    +     +G+ELEP+T+ + V+ MLI       + D   +I+   T
Sbjct: 1   MIQAKNKHIKLDWDFIMNEGLYGKELEPDTYQLAVSNMLISTGHMFEKLDRGDSIRVPIT 60

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   ++F   L+NPPFG       + ++ +     L R      K  +   LF+  
Sbjct: 61  --------RKFDNILANPPFGI------NGLKYDEFESPLKR-EYVPIKTDNAVSLFIQA 105

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L++     G+ A+VL        ++ +    IR +LL+   ++ I+ LP+ +F  T
Sbjct: 106 IIYMLKI----NGKCAVVLPDGQDLFSKSNNRLVAIREYLLKTCDLKEIIYLPSGIFTYT 161

Query: 402 NIATYLWILSNRKTEER 418
           +I T ++    ++  +R
Sbjct: 162 SIKTCVFYFVKKERRKR 178


>gi|261364423|ref|ZP_05977306.1| N-6 DNA Methylase family protein [Neisseria mucosa ATCC 25996]
 gi|288567330|gb|EFC88890.1| N-6 DNA Methylase family protein [Neisseria mucosa ATCC 25996]
          Length = 720

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 116/371 (31%), Gaps = 48/371 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
            T  + N              ++E+          +   L  +  +   G   +++    
Sbjct: 254 ETQQQKNRAQNTQELFKRVTGLYEEGRLKDAEVFKDNIRLTPERVRTIVGYLQDVNLSKT 313

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                   +E  +  F          + TPR +V     +L    D            + 
Sbjct: 314 DLDSKGRAFETFMDSFF---RGSFGQYFTPRRIVKFIVDVLPISHDHF----------VL 360

Query: 211 DPTCGTGGFLTDAMNHVA------------DCGSHHKIPPILVPHGQELEPETHAVCVAG 258
           D +CG+GGFL  A++ V             D   H         +G E+  +        
Sbjct: 361 DTSCGSGGFLLHALDKVRREADEYYSEGSADHFRHWHDFAEKKLYGIEINEQISRAAKMN 420

Query: 259 MLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M+I             L  +    +  +   F    F + ++NPPFG   ++++ A    
Sbjct: 421 MIIHDDGHTNIITADGLLSDKALQNQSNNLGFKYNHFDFIITNPPFGSTVKQNEQAYLAT 480

Query: 316 HKNG-------ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  G       +    G    +     +LF+    N L+      G  AIV+    L N 
Sbjct: 481 YGFGVSDVSWLDTKNSGVQNRESQKTEILFIEQCRNFLK----ENGYLAIVIPDGILTNS 536

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSN-RKTEERRGKVQLI 425
                   +R  +  +  I A+V+LP   F  T   + + +  L    K E  R +   +
Sbjct: 537 SL----QYVRDQIETDFRIIAVVSLPQTAFTATGAGVKSSVLFLRKYPKAESERIRNLKL 592

Query: 426 NATDLWTSIRN 436
           +  +   +  N
Sbjct: 593 DIQNTLKNHHN 603


>gi|261868513|ref|YP_003256435.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413845|gb|ACX83216.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 825

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/505 (16%), Positives = 164/505 (32%), Gaps = 76/505 (15%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFSSTIARLEKA 130
           F K+    F +  +      G      ++ + I       K  + E  D +  I   + +
Sbjct: 174 FAKIYDEKFTSPDDVVKFRAGVNEAEEDVSNRINELFCAVKTKYKEVIDINDKINLDDHS 233

Query: 131 -GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              +    +N+  I+   D + D      +E  I      +      F TPR+V+ L   
Sbjct: 234 LYYVVGQLQNYCLIDAERDAIAD-----AFETFIGY---ALKGPQGQFFTPRNVIKLMVN 285

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---------------HH 234
           +L    D            + DP CG+GGF+ +++ H+                      
Sbjct: 286 ILNQGVD----------EKIIDPACGSGGFIVESLRHIWAIWDKDAQRLKWNNLALQEEK 335

Query: 235 KIPPILVPHGQELEPETHAV--CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +   + + HG E +     V      +L          D  +      T ++       F
Sbjct: 336 QKAAMSLIHGIEKDSLLAKVSKAYMAILGDGKGGIFCEDSLELPTHWDTKTQQSIHINSF 395

Query: 293 HYCLSNPPFGKKWE---KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +  L+NPPFGK  +   K+K A  K  K  +           S+  M   +    +    
Sbjct: 396 NCLLANPPFGKDIKITGKEKLAQYKLAKKWKKDGDKYIETNKSNSEMPPQILFIERCLDL 455

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I++  +     R+     +     +    I  ++ LP + F   N A  + +
Sbjct: 456 LTDGGRMGIIIPETYFHAPRS-----QYVMEFMAKHNIFCLIDLPHNTFRPHNNAKCVVV 510

Query: 410 LSNRKTEERRGKVQLINATDL---------WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
               K  +++ K+ +  A ++         +    ++ K   I+ DD      +IY  ++
Sbjct: 511 FL-EKNRKQQEKILMCVAEEMGHDHQGKEIFRWDYDQNKSTSILWDDIESINKEIYDLKQ 569

Query: 461 NG-----------------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           N                  K+S ++D       ++ + R        +KT   R+ A  +
Sbjct: 570 NSIKENWTSSLSNNDLSNKKYSFLVDSNLVSNTKVYIPRYYWQ----EKTKELRITASKS 625

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYP 528
              L  + +      +        P
Sbjct: 626 GASLISIQELISSKAIHFFDGHGSP 650


>gi|282909128|ref|ZP_06316946.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282327392|gb|EFB57687.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 200

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 26/199 (13%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL       L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSF------------YNTSEYSLSTLGSTNTRNN 99
            + +  +  D E         +   GY                T ++ +  L +T  R  
Sbjct: 63  DITYQEAWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKV 121

Query: 100 LESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             S +   S+N    +F D D SST       E+  L+ K+  N   +      +   ++
Sbjct: 122 ETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDML 181

Query: 156 SNIYEHLIRRFGSEVSEGA 174
            + YE LI RF +   + A
Sbjct: 182 GDAYEFLIGRFAATAGKKA 200


>gi|269125657|ref|YP_003299027.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268310615|gb|ACY96989.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 698

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 42/256 (16%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               + TP  +  L   LL           P     + DP CG G  L  A  H A    
Sbjct: 171 SGGTYGTPPKLADLMARLLKP------SGGPYP-ARVLDPACGGGTLLAAAARHGA---- 219

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      GQ+  P         +L+   E++        +++G +L  D F+G   
Sbjct: 220 -------TFLAGQDSLPVQARRSTVRLLLAAPEAEVT------VREGDSLRADAFSGVTV 266

Query: 293 HYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              L NPP+G + W  D+ A +         R+  GLP  ++  + ++ H    L     
Sbjct: 267 DGVLCNPPYGDRDWGHDELAYD--------PRWAYGLPARAESELAWVQHALAHL----E 314

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GG A ++L  +             +R  LL    + A++ALP       +I  ++W+L 
Sbjct: 315 PGGLAVMLLPPAVAARSSG----RRVRGALLRGGAVRAVIALPPGAAVPLHIGLHVWVLQ 370

Query: 412 NRKTEERRGK-VQLIN 426
               +    + V  ++
Sbjct: 371 RPDPKAGPPEAVLFVD 386


>gi|254391268|ref|ZP_05006473.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294816307|ref|ZP_06774950.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444637|ref|ZP_08219371.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197704960|gb|EDY50772.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294328906|gb|EFG10549.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 666

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 101/278 (36%), Gaps = 37/278 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           R +   YE L+ R+    +   +   TP  +  L  AL     D          RT+ DP
Sbjct: 124 RGVGPTYEFLLERW--LGAHVRQVTTTPGQLAELMVALAAPSGDRP--------RTVLDP 173

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CGTGG L  A +H +           L   G ++ P    +    +    L     R +
Sbjct: 174 ACGTGGLLLTAGHHWS-------SRRRLDLLGADISPVLTRLARGRVATAGL----PRSV 222

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              I+ G TL  D++  +R    L NPP+  +    ++            R+    P  +
Sbjct: 223 RTQIRTGDTLRSDVWPEERADVVLCNPPYNTRDWGHEELATD-------PRWVFAHPPRT 275

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +  + ++ H  ++L      GG A ++L              +     LL    + A++A
Sbjct: 276 EPELAWVQHALSRL----ADGGTAVLLLPPGVAKRRAGRRIRA----GLLRTGALRALIA 327

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKV-QLINATD 429
           LP       ++  +LW+L     +        L++A D
Sbjct: 328 LPVGSAPPHSVGLHLWLLRKPAEDAPPPTTLLLVDAED 365


>gi|157143789|emb|CAL47057.1| type I restriction-modification system, M subunit [Listonella
           anguillarum serovar O2]
          Length = 152

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+    SE   GA  + TPR ++ +   L+        K        + DPT GTGG
Sbjct: 7   YEGLLEINASEKKSGAGQYFTPRVLIEVMVELMKPTPKD--KRHNQKGDVIVDPTAGTGG 64

Query: 219 FLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           FL  A  ++           + +         G EL P+T  + +  +++  L  D   D
Sbjct: 65  FLIAAHQYMEKNFDVTGLDEADYDSYQHETFFGMELVPDTRRLAMMNLMLHDLAVD---D 121

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            +  +  G TLS +     +    L+NPPFG
Sbjct: 122 ENSGVLYGDTLSNEGKALPKASLILANPPFG 152


>gi|291276745|ref|YP_003516517.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           mustelae 12198]
 gi|290963939|emb|CBG39776.1| putative Site-specific DNA-methyltransferase (Adenine-specific)
           [Helicobacter mustelae 12198]
          Length = 650

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/421 (14%), Positives = 128/421 (30%), Gaps = 58/421 (13%)

Query: 53  SAVREKYLAFGGSNIDLESF----VKVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIAS 106
           S +          N DLE       K  G   Y         + +G    ++ L S  + 
Sbjct: 206 SGILLALEEIRFKNFDLERLNADGQKSDGAKIYGAIVDNLKRANVGPDVKKDKLLSQFSI 265

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
             D  K      + +ST+ +         + K      +      + ++   Y   +  +
Sbjct: 266 IKDAPKI----NEVNSTLGKTPLKHYAEFLYKRIYQ-NIKYTQTSEDILGRFYGEFMS-Y 319

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                +     +TP+ +  L   L                  ++DP CGT GFL  AM++
Sbjct: 320 SGGDGQTLGIVLTPKHICELFCDLA----------KLKPDDRVFDPCCGTAGFLIAAMHN 369

Query: 227 VA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +       +  +        G E   +  ++    M++R        +     Q      
Sbjct: 370 MLLQVTNDTQKQEIKENQLFGIEERADMFSIATTNMILRGDGKSNLDNKDFLKQNPP--- 426

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL   K     + NPP+ +  + +    E                              
Sbjct: 427 -DLQKDKAATVGMMNPPYSQGSKANPALYEIAFS-------------------------- 459

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L      GGR  +++  S +        E  I+  +L+   +E ++ L  + F+    
Sbjct: 460 EHLCDSILKGGRVIVIVPQSAM--TGKSKEEKAIKANILKKHTLEGVITLNKNTFYGIGT 517

Query: 404 ATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
              + I       ++    + IN   D +   +++G    I   D++  +L ++   +  
Sbjct: 518 NPCIAIFKAGIPHQKDKICKFINFENDGFVVQKHKGLVETIHAKDKKAHLLKVWRDEKEA 577

Query: 463 K 463
           +
Sbjct: 578 E 578


>gi|256787267|ref|ZP_05525698.1| hypothetical protein SlivT_22487 [Streptomyces lividans TK24]
          Length = 672

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 105/305 (34%), Gaps = 52/305 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             YE L+ R         +  +TP  +  L   L             G  RT+ DP CGT
Sbjct: 160 KAYEFLLGRHLDANPR--QYTLTPDPLADLMAELA------------GPARTVLDPACGT 205

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A              P     GQE +P   A+                D +  I
Sbjct: 206 GSLLRAAA---------ATTRPGQELCGQESDPALAALTAL-------RLALSTDATVRI 249

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
             G +L  D  TG R    L +PPF ++ W  D+ A +         R+  G P  ++  
Sbjct: 250 AAGDSLRADARTGLRADAALCHPPFNERNWGHDELAYD--------PRWEYGFPARTESE 301

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H   ++      GG   +++  +             +R  LL    + A++ALP 
Sbjct: 302 LAWVQHALARVR----DGGTVVVLMPPAAASRRSG----RRVRADLLRRGALHAVIALPV 353

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                 N+  +LW+L   +    +  V L +        R     R +     R  +LD 
Sbjct: 354 GAAPPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDA 408

Query: 456 YVSRE 460
           + + +
Sbjct: 409 WTAFD 413


>gi|289771161|ref|ZP_06530539.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces lividans TK24]
 gi|289701360|gb|EFD68789.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces lividans TK24]
          Length = 735

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 105/305 (34%), Gaps = 52/305 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             YE L+ R         +  +TP  +  L   L             G  RT+ DP CGT
Sbjct: 223 KAYEFLLGRHLDANPR--QYTLTPDPLADLMAELA------------GPARTVLDPACGT 268

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A              P     GQE +P   A+                D +  I
Sbjct: 269 GSLLRAAA---------ATTRPGQELCGQESDPALAALTAL-------RLALSTDATVRI 312

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
             G +L  D  TG R    L +PPF ++ W  D+ A +         R+  G P  ++  
Sbjct: 313 AAGDSLRADARTGLRADAALCHPPFNERNWGHDELAYD--------PRWEYGFPARTESE 364

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H   ++      GG   +++  +             +R  LL    + A++ALP 
Sbjct: 365 LAWVQHALARVR----DGGTVVVLMPPAAASRRSG----RRVRADLLRRGALHAVIALPV 416

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                 N+  +LW+L   +    +  V L +        R     R +     R  +LD 
Sbjct: 417 GAAPPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDA 471

Query: 456 YVSRE 460
           + + +
Sbjct: 472 WTAFD 476


>gi|296269612|ref|YP_003652244.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296092399|gb|ADG88351.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 625

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 81/252 (32%), Gaps = 49/252 (19%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+ R+    S    +  TP +V      L               +RT+ DP CG G  L
Sbjct: 134 FLLDRYAEVHSRRLAE--TPPEVAEFMARLAGPG-----------VRTVLDPACGLG-IL 179

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             AM  V               +GQE+E     +    + +  +  + R         G 
Sbjct: 180 LSAMKGVEHA------------YGQEIEEALARIAKIRLDLTGIPGEVRA--------GD 219

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +L  D +        + +PPF ++     + V          R+  GLP  ++  + ++ 
Sbjct: 220 SLRDDAWPDLLVDAVVCHPPFNERNWGYDELVHS-------PRWEYGLPPKTESELAWVQ 272

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L                       A      IR  LL    ++A++ L       
Sbjct: 273 HALSHLVPGGLA--------LLLLPAVVAARRSGRRIRSNLLRRGALQAVIGLSAKTVGG 324

Query: 401 TNIATYLWILSN 412
           T +  ++WIL  
Sbjct: 325 TGLPVHIWILRK 336


>gi|254410592|ref|ZP_05024371.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182798|gb|EDX77783.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC
           7420]
          Length = 86

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 8/78 (10%)

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            + I +YF+ EV PHV DA++D            ++GYEI+FN++FY++QP R L+++  
Sbjct: 13  KQQIHEYFLEEVRPHVEDAWLDL--------SKTQIGYEISFNKYFYKHQPLRSLEEVTR 64

Query: 656 ELKGVEAQIATLLEEMAT 673
           ++  +E +   LL ++ +
Sbjct: 65  DILELEQETEGLLRQLVS 82


>gi|225573238|ref|ZP_03781993.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039370|gb|EEG49616.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM
           10507]
          Length = 927

 Score =  104 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 132/416 (31%), Gaps = 49/416 (11%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             +   L S + +  +   I        +  +  +             +  I     G+ 
Sbjct: 279 RATPVELKSDSGKAEIRRRIDGLYAKLLSDPDYGEMFKDETLEYDNESIAYIVSILQGLS 338

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L  +      + + YE L+    S +   +  F TPR++V  A  ++          +  
Sbjct: 339 LTDEETNTDALGDAYEVLLP---STLKGESGQFFTPREIVRFAIEVIAP--------NYS 387

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---------------HGQELEP 249
               + D  CG+ GFL+ A+ ++    +                          G +++P
Sbjct: 388 KKEYILDTACGSAGFLSVALENIRKQINTLYANRGFSKEKKRGMLKDYAGKYVFGCDIDP 447

Query: 250 ETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             + +      ++     +    D      +     +   T        +NPPFG + + 
Sbjct: 448 LLYRISKSYMAIMGEGKGNIYNLDSLDLTNRLDPNFRRSVTEGSVDIITTNPPFGTQIKD 507

Query: 308 DKDAVEKEHKNGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNG--GGRAAIVLSS 362
            +  V + +  G     G    ++    D   LFL    + L+   N   GGR  IVL  
Sbjct: 508 TRRDVLRTYDLGHKIINGEPTNEVLEGQDPDKLFLERDISYLKEATNDADGGRMVIVLPK 567

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
             L   +  S E   R+WLL+   I AIV LP + F   T   T L  L   +       
Sbjct: 568 QNLSGAKEESVE--FRKWLLKRVQITAIVDLPREAFQPHTGTKTSLVFLKKVRNIPDNYP 625

Query: 422 VQLI-------NATD--LWTSIRNEGKKRRIINDDQRR----QILDIYVSRENGKF 464
           + +        +     L+    N    R   N+        +ILD Y       F
Sbjct: 626 IFMAVSEAVGHDRRGLPLYKKDSNGTDLRNDKNERVIWNDLPEILDRYKEYTEKGF 681


>gi|254383775|ref|ZP_04999123.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
 gi|194342668|gb|EDX23634.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
          Length = 737

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 87/260 (33%), Gaps = 46/260 (17%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    +  + TP  +  L   LL           P     + DP CG+G  L  A     
Sbjct: 163 DEGAASGVYQTPEGLAVLMARLL-----------PAEASRVLDPACGSGTLLAAAA---- 207

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          GQ+  P         +L+   E++         + G +L  D F 
Sbjct: 208 -------RRDARKLFGQDSLPVQGRRTAVRLLLAAPEAETTI------RVGDSLRDDAFP 254

Query: 289 GKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                  L NPPF  + W  D+ A +         R+  GLP   +  + ++ H    L 
Sbjct: 255 DVTVDAVLCNPPFADRDWGHDELAYD--------PRWAYGLPPRLESELAWVQHALAHL- 305

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG A ++L  +  F          +R  L+    + A+++LP    +  +I   +
Sbjct: 306 ---EPGGHAVMLLPPALAFRSSG----RRVRAELIRAGALRAVISLPARAAYPLHIGLQI 358

Query: 408 WILSNRKT-EERRGKVQLIN 426
           W+    +     R  V  ++
Sbjct: 359 WVFQRPEPGGTDRTTVLFVD 378


>gi|88860313|ref|ZP_01134951.1| type I restriction-modification system, M subunit, putative
           [Pseudoalteromonas tunicata D2]
 gi|88817511|gb|EAR27328.1| type I restriction-modification system, M subunit, putative
           [Pseudoalteromonas tunicata D2]
          Length = 204

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 65/182 (35%), Gaps = 7/182 (3%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    +   L +++W +A+ + G    +DF   I     ++RL    +   + V ++   
Sbjct: 10  TAEKITLEELRSWLWGSADIMRGTVDSSDFKNYIFGLIFIKRLSDVFDERIADVMKEEDC 69

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASFSDNAKAIFEDF 118
                ++L              + ++     + N     +   + I   + + + +    
Sbjct: 70  SATEAMELIQ-SDNPEQFVPEDARWANLVKKTENVGESIDEAFAEIERQNTSLEKVLTAI 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            F           LL ++ ++F+  +L    +    ++ + YE+LI  F  +  +   +F
Sbjct: 129 QFGDK--DKLSNELLMRLLRHFNKHKLGNKNLYKADLLGDAYEYLIGMFADDAGKKGGEF 186

Query: 178 MT 179
             
Sbjct: 187 YI 188


>gi|320535517|ref|ZP_08035619.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320147640|gb|EFW39154.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 659

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 148/459 (32%), Gaps = 82/459 (17%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHP 147
             +        L S+     DN +    D D     +   E +         F+ I L  
Sbjct: 255 KQIRQEKIDLMLSSFSEISKDNQRDEPTDVDKLVGKLLEKEASTNKQIFTYIFNNIYLSI 314

Query: 148 DTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           D +     +M  +Y   + ++     +     +TP  V  +   +L    D+        
Sbjct: 315 DAMAGHLDIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAEILNVNKDS-------- 365

Query: 206 IRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQELEPETHA 253
                D   G+ GFL  +M  + D                 +        G EL  E   
Sbjct: 366 --RTMDLATGSAGFLISSMEIMIDDTNKTFGKDTSKANKKIEEIKKEQLLGVELNAEMFT 423

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
           +    M++R        D S NI++G+T    ++L+T  + +  L NPPF  +       
Sbjct: 424 LAATNMILRG-------DGSSNIRKGNTFRTPEELYTNFKANRLLLNPPFSFEENG---- 472

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                                   M F+    +K+      GG AAI++  S        
Sbjct: 473 ------------------------MPFIKFGLSKM----EKGGLAAIIIQDSAGSGRAIS 504

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
           S      + +L+ + + A + +P DLF     + T ++I       +    V+ I+  + 
Sbjct: 505 SN-----QEILKKNTLLASIKMPVDLFIPMAGVQTSIYIFEAGTPHDYEKTVKFIDFRND 559

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR---------MLDYRTFGYRRIKVL 481
                  G        ++ + I+ +Y + ++ K ++         + D+ T G       
Sbjct: 560 GYKRTKRGLNEVDSPTERYQDIIKLYKAGKSAKVNKNLWNIDEIYIEDFITDGGNDWNFE 619

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           +  ++          +  AD    ++S + +S      K
Sbjct: 620 QHKKIETKPKLEDFKKTVADYLAWEVSNILKSEEKSSKK 658


>gi|283956931|ref|ZP_06374404.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791657|gb|EFC30453.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 242

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 99/272 (36%), Gaps = 32/272 (11%)

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + V  M++  + S      +   +       D+   +++   L NPPFG K        E
Sbjct: 1   MGVMNMILHEISSPNIIKTNTLSK----KITDITEQEKYEVILVNPPFGGK--------E 48

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           KE              K +   +LFL H+   L+      GR AI++    LF  +  + 
Sbjct: 49  KEQIQENFP------IKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLF--QNSNA 96

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
              +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    + 
Sbjct: 97  FVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYE 151

Query: 433 SIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            I   +  K + +     ++ L  Y  R+    S ++  +    R   +      +   +
Sbjct: 152 LIPPYKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNYDLSAK-NPNVKEE 210

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           K      E   +  +   + Q +  ++   + 
Sbjct: 211 KILKTSEEILNSLEENLKIQQEYLNELKSILK 242


>gi|254669507|emb|CBA03431.1| type I restriction enzyme M protein [Neisseria meningitidis
           alpha153]
          Length = 146

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+      G+ AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LF+ T I   + ++     +  +        T+   S   +   +  + + 
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQ---FAEEGTNQVISGGIKDGNKNRLREQ 127

Query: 448 QRRQILDIYVS 458
              +I+D + +
Sbjct: 128 DIHKIIDTFTN 138


>gi|288926003|ref|ZP_06419932.1| putative type I restriction-modification system, M subunit
           [Prevotella buccae D17]
 gi|288337223|gb|EFC75580.1| putative type I restriction-modification system, M subunit
           [Prevotella buccae D17]
          Length = 399

 Score =  103 bits (257), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 114/339 (33%), Gaps = 82/339 (24%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V    YE ++    + + + A  F TPR+++     +L           P     + DP
Sbjct: 25  DVKGTAYETIVS---NTLKQEAGQFFTPRNIIKCMVEML----------DPDQNCRVLDP 71

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI-----------------------LVPHGQELEP 249
            CG+GGFL   ++HV    + +  P +                        +  G + +P
Sbjct: 72  ACGSGGFLVMVLDHVRRKIAKNLYPDLDEVRLEAKYNSPEVDDAVREYAEKMIFGFDFDP 131

Query: 250 ETHAVCVAGMLIRR-LESDPRRDLSKNIQQGS-----------------TLSKDLF---- 287
           +        M++     S+     S +   GS                 +  KD      
Sbjct: 132 DLKKAARMNMVMAGDGHSNIYNINSLDYPYGSKPDVPLIAEAVNDSIKHSADKDFHFETP 191

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F    +NPPFG K E D +   +   N             +   +LF+    N
Sbjct: 192 ASNAQGKFDMIFTNPPFGSKVEVDTEISTRFELN------------STAPEVLFIEACYN 239

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NI 403
            L+     GG+  IVL    L N    S    +R W+L +  + A V LP + F     +
Sbjct: 240 FLK----PGGKMGIVLPDGILGNPNTES----VRLWILRHFKLLASVDLPVETFLPQVGV 291

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              L  L  +  EE    ++  +       + N GK RR
Sbjct: 292 QASLLFLQKKTDEEMLIPIEDEDYNVFMAIVENVGKDRR 330


>gi|253827884|ref|ZP_04870769.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|253511290|gb|EES89949.1| putative methylase [Helicobacter canadensis MIT 98-5491]
          Length = 542

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 79/497 (15%), Positives = 157/497 (31%), Gaps = 89/497 (17%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                  ++ + +  +   A +     +    +  L    +  +  +NF  I      V 
Sbjct: 46  DKQQIDEDISAILKGYGLEAFSANPKINRKKILKALLDYEITPRDLENFIQI-----IVL 100

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            + +  +YE+                 TP +V  L   LL                ++Y+
Sbjct: 101 HKTILGLYEY----------------ATPIEVNLLVCKLL----------DMKSNESIYN 134

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG G  L                      +G+++ P+   +     +    +      
Sbjct: 135 PCCGLGSLL------------FGMDERNFDYYGEDIHPKILYLAKILSIFMGFKRSYLAV 182

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                       +  F     +      P       +      + ++ +L  F       
Sbjct: 183 -------ADIFKESAFRSLEANKAFCYFPL------ESSLNLWDFRDNDLEPFV-----K 224

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + FL +     +          I +  S L     G     +R++L E  L+E +V
Sbjct: 225 SIPEIPFLAYTLRHFKQK-------GIFIVRSLLLQKAYG---KRLRKFLKEKRLLEGVV 274

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             P ++F        L ILS ++ +    KV  I+A   +       +           +
Sbjct: 275 EFPRNIFPHQVEEFSLLILSKQENK----KVFFIDAQKFYLKEGKYNRLTN------IDR 324

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPL 510
           I D Y+S+++   SR++DYR       K     +   I D   L   LE     +++   
Sbjct: 325 IYDEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESK 384

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                +D     ++    YG++E F++ S KS++ +  K++     I+  +         
Sbjct: 385 KDEVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS----- 439

Query: 571 ADPVTDVNGEWIPDTNL 587
             P   + GE I D  +
Sbjct: 440 --PKLAIIGERIGDKRV 454


>gi|308535359|ref|YP_002140040.2| type I restriction/modification system N-6 DNA methyltransferase
           [Geobacter bemidjiensis Bem]
 gi|308052704|gb|ACH40244.2| LOW QUALITY PROTEIN: type I restriction/modification system N-6 DNA
           methyltransferase [Geobacter bemidjiensis Bem]
          Length = 1221

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 83/527 (15%), Positives = 168/527 (31%), Gaps = 86/527 (16%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           R L   +      V           +    F K+       +  +      +TNT + L 
Sbjct: 201 RSLRDLILDMEDEVLANAGVDVFEEVFKLIFTKLYDELTVYSGRHKYLRFRNTNTASELR 260

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             I +  + A   +E         RL    L      +    +L    +   V+   +E+
Sbjct: 261 DRIQALFEEACDRWEGVFPPGDRLRLTADHLQV-CIGSLEKYKLFNSNL--DVIDEAFEY 317

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+ +           + TPR V+ +   +L          +P +  ++ D  CG+ GF  
Sbjct: 318 LVSK---SSKGEKGQYFTPRWVIDMCVKML----------NPQVDESMIDTACGSAGFTM 364

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPE------------------THAVCV-AGML-- 260
            A+  V       +          E +PE                  +  V     ++  
Sbjct: 365 HAIFKVWRDILDREGLAASHLFTMERKPEACYDYVREKVFAIDFDEKSVRVARCLNLIAG 424

Query: 261 --------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------------FHYCLSN 298
                   +  L+     +  K      T ++     ++              F   ++N
Sbjct: 425 DGQTNVMHLNTLDWKKWDETVKEENWNDTYNQGWKKLRKLLIDPKGKDYRAFGFDLLMAN 484

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF    ++       E  + E G+    + +     +LF+    + L      GGR AI
Sbjct: 485 PPFAGDIKQSDMLSLYEMGHKENGKAESKVGR----DLLFIERNLDFLRP----GGRMAI 536

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEE 417
           VL           +G+  IRR++ E+  I A+V L  + F   T I T +  +     + 
Sbjct: 537 VLPQGRF----NNAGDKRIRRYIAEHCRILAVVGLHPNTFKPHTGIKTSVLFVQKWNEDP 592

Query: 418 RRGKVQL---INATDLWTSIRNEGKKRRIINDDQR---RQILDIYVSRENGKFSRMLDYR 471
             G   L   ++  +++ + +    K    + D+    + ++ I+        S+++ Y 
Sbjct: 593 TAG--LLCPRVDDYNIFFATQKLPSKD--SSGDKIYVTKPVVSIFEEGNPNGESKLVKYD 648

Query: 472 TF----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                  Y  IK     +      K  ++  E +  +  L+ + +  
Sbjct: 649 HDDFLKRYGSIKAATVYQFRVNGKKKRMSLEEIEEQYGGLANVEKPM 695


>gi|48243647|gb|AAT40788.1| putative type I restriction/modification methyltransferase
           [Haemophilus influenzae]
          Length = 167

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 14/159 (8%)

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
              + E EIR+ ++  DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A 
Sbjct: 1   SQTNNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDAR 58

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVL 481
            +      + +  R    D   +I D   + +          F +             VL
Sbjct: 59  QIGYM---KDRVLRDFTADDIAKIADTLHAWQTSDGYEDQAAFCKSTTLEEIAGNDF-VL 114

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            P R     ++       A+   + L+ L +  +    +
Sbjct: 115 TPGRYVGTAEQEDDGVPFAEK-MQNLTALLKEQFAKSTE 152


>gi|254410126|ref|ZP_05023906.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196183162|gb|EDX78146.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 679

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 97/540 (17%), Positives = 185/540 (34%), Gaps = 56/540 (10%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKN----FSGIE 144
           +   N  N L+SY+       + +  +   ++ S +   ++  L     K+     S I 
Sbjct: 80  IDKGNVTNILDSYMEGKGTANELLLPELRKNYPSAMDESDRFSLGDSSIKSSFKVLSDIN 139

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L     P  ++   ++ LI     ++      F TPR +V    ++            P 
Sbjct: 140 LVES--PSYIIGEAFQALIG---PKLRGDKGQFFTPRSLVKTMVSIA----------DPK 184

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPETHAVCVAGMLIRR 263
               + DP CGTG FL+++ N+  +      +P       G + + +   +  A + I  
Sbjct: 185 PYSKVVDPACGTGSFLSESYNYWIETTGETLLPDNHYSLVGLDKDKDISRLATATLEI-- 242

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +  +     + +    + L    F+ K F     L+NPPFG K    ++++ +++  G  
Sbjct: 243 IAPNNYSVFTTDSLDINHLIASGFSSKIFDADVVLTNPPFGAKIGVTRESILEQYDLGHH 302

Query: 322 GRF---------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             F            + K  D  +LF+      L+     GG   IVL      N + G 
Sbjct: 303 WYFSSTENSWIKSDKVRKNQDPQILFIELCVKILK----PGGVLGIVLPEGVFGNKQTG- 357

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLIN---AT 428
               I  +L +  +I A++  P   F   T+  T +      K +        I    A 
Sbjct: 358 ---YIWDYLHQEGIITALLDCPRTTFQPGTDTKTNVLFFQKFKDKSHNKTRYPIKVPIAV 414

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR--TFGYRRIKVLRPLRM 486
            L       G+             + I    ++   S+          Y  +       +
Sbjct: 415 ALHCGHDRRGRVTLENGQKYPDDFITIAHEFKDNNSSKYWSNCEVNNPYYWVPRFYDASL 474

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES-FVKESIKSNEA 545
           S  + K          ++ +L    +S ++ I K        YG     F++ S  +N  
Sbjct: 475 SKSIQKKAFEMHADLASFDELI---KSGYIAIRKGHEVGSQAYGTGNIPFIRTSDIANWE 531

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW-IPDTNLTEYENVPYLESIQDYFV 604
            ++    + S  +    A  +K    D +  V+G + I  T +    N+     IQ +F 
Sbjct: 532 VSVDPTNAVSEEIFQKYAKYQKLKTGDILLVVDGRYRIGRTAILHSNNI--KSVIQSHFK 589


>gi|206896558|ref|YP_002247704.1| type I restriction/modification enzyme [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739175|gb|ACI18253.1| type I restriction/modification enzyme [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 678

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 88/280 (31%), Gaps = 65/280 (23%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------------HKIP 237
            +   +YDP  GTGGF+  A   V     +                          ++  
Sbjct: 5   EIGEKIYDPAAGTGGFILRAFEVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKL 64

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYC 295
                +  E  P+ + + +  M++         D   N+ +  +L     L   +++   
Sbjct: 65  KEESLYAVEKAPDVYKLALMNMILHN-------DGKSNLFEADSLDNRAQLEHKEKYDVV 117

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG-- 353
           L+NPP+G                    R G           LF+ H+   L     G   
Sbjct: 118 LTNPPYGP---------------LAQSRVGTFEFHAKRYEALFIQHIMAALRPSEPGKKR 162

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
            RA +++    LF     S    IR  LL    ++A+ ++P  +F   + + T +     
Sbjct: 163 SRAVVIILDKILF--DNSSVFKNIRMKLLREFDLKAVFSMPAGIFQPYSGVKTTVLYFEK 220

Query: 413 RKTEE----------RRGKVQLINATDLWTSIRNEGKKRR 442
              EE             +V  ++  +   ++  + +   
Sbjct: 221 PTKEEWDETKKQNAYTTKQVLFVDVKEDGFTLTTQRRPIN 260


>gi|84387340|ref|ZP_00990360.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
 gi|84377789|gb|EAP94652.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
          Length = 1303

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 147/401 (36%), Gaps = 50/401 (12%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-AIF 115
           ++  ++     + +S       +   +S  +   +G      ++   +     + K    
Sbjct: 42  DEMSSYADYKGERDSLELADRLNALFSSNINFHEIG-----QHVYESLNLLRYSVKVEGL 96

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + DFSS     +   ++ +    F+    L  D   D  +S ++E +++      +   
Sbjct: 97  SELDFSSKNHLFKDKRVVMEALYWFNQWGGLRLDRRKD--ISQLFEVILQ---ETRTPQT 151

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F + + +  L  A+           +P    T+ DP  G G FL  A N +    +H 
Sbjct: 152 TQFSSSKFLSQLIVAIA----------APKSGDTILDPCAGEGSFLIAAHNAIE--AAHT 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G +L  +   + +    +          LS+      +  +D     ++  
Sbjct: 200 DFLSQTSFTGYDLSEDAILIAMVRFFLSG---AFNFHLSRRSGLYESYGRDQHP--KYDV 254

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+ PP G K          ++++    +  P +   +D  ++F+      L+L    GG
Sbjct: 255 VLAQPPVGIK--------RDDYRHLSYEKQFPVI--TNDIVVMFIQQALFSLKL----GG 300

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413
           RA I +    LF       E  +RR+L+E+  IEA+V +P  +    + I   L +LSN 
Sbjct: 301 RAIIAIPEGLLFGKNGSQIE--LRRYLVEHGYIEAVVRIPPKMLIEDSGIRGALLLLSNS 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           K   R  KV+  +    +    N+  +   +      QIL+
Sbjct: 359 KKRNR--KVRFADLATYFHRDINKSTQ--ALPKALVEQILE 395


>gi|325919626|ref|ZP_08181635.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
 gi|325549874|gb|EGD20719.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
          Length = 617

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 114/314 (36%), Gaps = 54/314 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y   + ++ +   +     +TPR V  L + +           +      + D 
Sbjct: 288 DVVGQFYGEFL-KYTAGDKKALGIVLTPRHVAELFSLIA----------NVSPESKVLDI 336

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPR 269
             GTGGFL  AM H+       +    +  +   G E  P+  A+  + M++R    D +
Sbjct: 337 CAGTGGFLISAMQHMLKKAVTEEERTDIKKNRLIGIENNPKMFALAASNMILRG---DGK 393

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +L +       + K      + +  + N P+ +                          
Sbjct: 394 ANLHQASCFDDAVIK-AIQKMKPNVGMLNQPYAQS------------------------- 427

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             SD  +  L  +   L+    G    AIV  SS +         + IR  L+ +  ++A
Sbjct: 428 -KSDAELHELYFVKQMLDCLEPGSTGIAIVPMSSAI-------KPNPIRDELMAHHTLDA 479

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTSIRNEGKKRRIIN-D 446
           ++++P +LF+     T + +   ++   + G K        D +   +++G+  +     
Sbjct: 480 VMSMPQELFYPVGTITCVMVWVAKRPHAKSGRKTWFGYWRDDGFIKTKHKGRIDQQGTWP 539

Query: 447 DQRRQILDIYVSRE 460
             R + +++Y +RE
Sbjct: 540 AIRDRWVEMYRNRE 553


>gi|307637134|gb|ADN79584.1| typeI restriction enzyme-M protein [Helicobacter pylori 908]
 gi|325995725|gb|ADZ51130.1| type I restriction enzyme M protein [Helicobacter pylori 2018]
 gi|325997321|gb|ADZ49529.1| type I restriction enzyme M protein [Helicobacter pylori 2017]
          Length = 381

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 110/340 (32%), Gaps = 33/340 (9%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + +    +       + +L      +   ++ ++  Y F      +   L      N + 
Sbjct: 63  KTIRDYKDFNGEEKEDFFLTLSDKQLPKLAYDELLNYLFEKHFNDNDLHLKLDAIFNRIS 122

Query: 102 SYIASF------SDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSG----IELHPDT 149
           S  A             A+FE      +    R      L    KNF+     + L    
Sbjct: 123 SNNAKLFNTKSTDKTTIALFESVSQYINEESKRANFTRALLDKLKNFNFKQAFLNLQNQQ 182

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D   + I+E+L++ + +       ++ TP  +  +   LL+          P     +
Sbjct: 183 GYD-FFAPIFEYLLKDYNNAGGGKYAEYYTPLSIASIIAKLLVI--------KPTQSVKI 233

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP+ GTG  L    + +               + Q++  ++  +    +++  L    R
Sbjct: 234 YDPSAGTGTLLMALAHQIG--------TDSCTLYAQDISQKSLRMLKLNLILNDLTHSLR 285

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             +  N       SKD     +  + +SNPPF   +  +   + +   +  LG   P +P
Sbjct: 286 YAIEGNTLTNPYHSKDHKG--KMDFIVSNPPFKLDFSNEHAEISQNKNDFFLG--VPNIP 341

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           K     M              +  G+ AI++ +  +    
Sbjct: 342 KNDKSKMPIYTLFFQHCLNMLSPKGKGAIIVPTGFISAKS 381


>gi|134097473|ref|YP_001103134.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910096|emb|CAM00209.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 467

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 113/336 (33%), Gaps = 34/336 (10%)

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L  D F   R    L NPPFG +     D            R+  GLP  S+  + +
Sbjct: 19  GDSLRADAFPDTRVDTVLCNPPFGVRDWGHDDLAYD-------PRWVYGLPPRSESELAW 71

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H    L      GG A +++                +R  L+    + A++ LP    
Sbjct: 72  VQHCLAHL----EPGGLAVVLMPPGAAERPSG----RRVRAELIRQGALRAVIGLPPGAA 123

Query: 399 FRTNIATYLWILSNRKTEERRGK-VQLINAT----------DLWTSIRNEGKKRRIIND- 446
              +++ ++W+L+        GK V  ++A+          +LW        +   + D 
Sbjct: 124 PPLHLSLHIWVLTCPDEALATGKSVLFVDASSGSVSDQRIVELWRDFDEAEDRFEAVPDV 183

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRT--FGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
            QR  I+D+  +  +   +R +  RT      + ++   LR         LA+L +  T 
Sbjct: 184 AQRLSIVDLLDATVDVTPARRVHIRTAISPNEQAELAEELRKRLGRACDELAQLASTPTI 243

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
               P             + +  P  W  + V + ++       +   +           
Sbjct: 244 DSKQPSDTPMTTV---WSVSEGEPMTWRTATVADLLRGGALALHRATPTHRTGSTRNADV 300

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTE--YENVPYLES 598
              D     ++D+ GE  P  +L +   E +     
Sbjct: 301 ASNDVAILTLSDLRGEPRPSGSLRDKPVEPIRIERG 336


>gi|186683509|ref|YP_001866705.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186465961|gb|ACC81762.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 614

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 136/390 (34%), Gaps = 64/390 (16%)

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------- 119
            D E+  ++A   +    +   +         N ++Y AS    A +I  +         
Sbjct: 215 HDDEALDELAKIIYVKIFDERSTVEKEEGAEFNFQTYGASNPSEAASIIRELYQNARNKE 274

Query: 120 ---FSSTIARLEKAGLLYKICKNFSGI----------ELHPDTVPDRVMSNIYEHLIRRF 166
              ++  I   E++  ++K     S +          E         +  + ++ ++   
Sbjct: 275 IEIYNQRIPGYERSRGVFKTPIKLSDVALFKIVEKLQEFSFIDSKADIKGSAFQSVLG-- 332

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S +  G   + TP  +V LA  ++           P     + DP CG+G FL+  +++
Sbjct: 333 -SAIRAGMGQYFTPPPIVDLAVGIM----------KPTASDMILDPFCGSGHFLSRCLDY 381

Query: 227 VADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           V                     HG E       + +  M++        R+L   +   +
Sbjct: 382 VVQHQGATLDSYTLHQFKFFHLHGIEKSERMVRIAMTDMMLHDDGHTNIRNLDALLSFEN 441

Query: 281 TLSKDLFTG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                          + F   L+NPPFG        ++ ++     +GRF  G  K S  
Sbjct: 442 YPDIVALNDSEDDTPEVFSMILTNPPFG--------SIMRQEVMEMVGRFQLGHKKKSLP 493

Query: 335 -SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +L L      L+     GG+ +IVL    L N  +      +R W+     I+A+++L
Sbjct: 494 LEILGLERCFQFLK----PGGKLSIVLPDGLLKNKSS----IFVRDWVENVAKIKAVISL 545

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGK 421
           P + F  +   + T L +    K  E+R K
Sbjct: 546 PEEAFNPYGAMVKTSLCVFQKYKNGEKRDK 575


>gi|257458623|ref|ZP_05623758.1| type I restriction-modification system, M subunit [Treponema
           vincentii ATCC 35580]
 gi|257444057|gb|EEV19165.1| type I restriction-modification system, M subunit [Treponema
           vincentii ATCC 35580]
          Length = 202

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 6/186 (3%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E   + +     
Sbjct: 1   MPVKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISSAFEKRYAELVSDGE 60

Query: 61  AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            F         ++   V   + +     +  T       +     I + +   K +    
Sbjct: 61  GFEDDRDAYTEKNIFFVPEKARWAVIAAAAHTPEIGIVIDTAMREIETQNKRLKNVLPQN 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             S  + +     +L  +   F+ +++        ++   YE+ I +F +   +   +F 
Sbjct: 121 YASPDLDK----RVLGDVVDLFTNMDMDGTEHNKDLLGRTYEYCIAQFAAYEGKKGGEFY 176

Query: 179 TPRDVV 184
           TP  +V
Sbjct: 177 TPASIV 182


>gi|332366262|gb|EGJ44017.1| restriction enzyme BgcI subunit alpha [Streptococcus sanguinis
           SK355]
          Length = 654

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 132/396 (33%), Gaps = 64/396 (16%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +        N        I S  D  + I  D   ++ +  L     L+      S    
Sbjct: 244 FRAIEDELNNLYQVRSKKIGSLLDTFRFITTDVRLNTKLTELGNRTPLWYFTDRLSNEVY 303

Query: 146 HP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           H      P  ++ + Y   + ++G          +TP ++  L   L+            
Sbjct: 304 HRVVGGTPFDILGSFYSEFV-KYGGNDGSDLGIVLTPLNITSLMADLI----------EI 352

Query: 204 GMIRTLYDPTCGTGGFLTDAM----NHVADCGSHHKIPPIL----------VPHGQELEP 249
               T+ DP  GTG FL  +M      V     ++K                 +G EL+ 
Sbjct: 353 SPTDTVIDPATGTGAFLIASMQKMIEQVEKDDVNYKTSEAKKQAIKKIKSDRLYGIELKS 412

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           + +A+    M++R        D   ++++G      L     F   L NPP+ +      
Sbjct: 413 KLYAISATNMILRN-------DGRAHLEEGDMFHLSLENDGNFDKLLMNPPYSQA----- 460

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                               K    S L  M+   K       GGRAA ++  S + +G 
Sbjct: 461 --------------------KTKVTSHLSEMNFMIKALGRLKCGGRAAFIVPQSTMTSGP 500

Query: 370 AGSGESEIR---RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
               +++ R   + LL+N+ I A++ +    F+    +  + +L +   ++    +   +
Sbjct: 501 KAIKDADYRELKQELLDNNRIIAVITMNPKTFYPYGTSPVVIVLEHGVPQKDSRSILY-D 559

Query: 427 ATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSREN 461
             D    +  + G        ++R+++LD    + +
Sbjct: 560 FRDDGNILNPHLGMLEDATATEKRKRLLDTIKDKID 595


>gi|162456792|ref|YP_001619159.1| type I restriction-modification system M subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161167374|emb|CAN98679.1| probable type I restriction-modification system,M subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 360

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +             + S  +     G R+   L+NPPFGKK        E +     L
Sbjct: 25  HGIGPSADEGQPPIETRDSLAADP---GARYSMVLTNPPFGKKSSVMVLTQEGDESREAL 81

Query: 322 GRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                      S+  + F+ H+   L +     GRAA+V+  + LF G AG     IRR 
Sbjct: 82  TVMREDFWATTSNKQLNFVQHVKTILAI----HGRAAVVVPDNVLFEGGAGE---TIRRK 134

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           LL +  +  ++ LPT +F+   +   +     +   E+
Sbjct: 135 LLHDCDVHTLLRLPTGIFYAQGVKANVLFFDKKPASEK 172


>gi|242309003|ref|ZP_04808158.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489]
 gi|239524427|gb|EEQ64293.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489]
          Length = 542

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 140/413 (33%), Gaps = 68/413 (16%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D+ TP +V  L   LL                ++Y+P CG G +L               
Sbjct: 109 DYATPMEVNRLVALLL----------DLKNGESVYNPCCGLGSWLFSLK----------- 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G+++  +   +                 +    +       D+F    F   
Sbjct: 148 -GRNFQYYGEDIHSKLIDIAR------------ILAVFMGFKNVHLEVADIFKDSAFGKL 194

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +N  F          +E                  S   + FL +              
Sbjct: 195 EANKAFC------YFPIEANLNLWGFRDEALEPFIKSFSEVPFLAYTLKHFHQK------ 242

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+ +  S L     G     +R++L++  L+EAI+  P ++F        L ILS ++ 
Sbjct: 243 -AVFIVRSLLLYKACGE---RLRKYLIKQKLLEAIIEFPRNIFPHQMEDFSLLILSKQEN 298

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +    KV  INA +L+     EGK  ++I       I D+Y S++N + SR++ Y     
Sbjct: 299 K----KVLFINAQNLFVK---EGKYNKLI---DIEMICDLYFSKQNTEISRLVAYENIYL 348

Query: 476 RRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              K    ++         LA  +E     +++        +D     ++    YG +E 
Sbjct: 349 ENFKTSYYIKGQNDKKTLNLAEFVECIYRGQRVEVKKDEVLIDCYNVGIKDFLEYGLSEE 408

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587
           F + S KSN+ +  ++K     I+  +           P   + GE I D N+
Sbjct: 409 FDEFSPKSNQKRIEQLKIKPYDILLSMRGIS-------PKVAIIGEGIGDKNI 454


>gi|291461157|ref|ZP_06027271.2| restriction enzyme BgcI subunit alpha [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378622|gb|EFE86140.1| restriction enzyme BgcI subunit alpha [Fusobacterium periodonticum
           ATCC 33693]
          Length = 370

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 99/318 (31%), Gaps = 48/318 (15%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +   +  +   Y   +  +     +     +TP+ +  L   LL                
Sbjct: 12  NNSAEDYLGRFYGEFMS-YTGGDGQNLGIVLTPKHITELFCDLL----------DLKTTD 60

Query: 208 TLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            + DP CGT GFL  AM+++   A+  +  K        G E +     +    M++R  
Sbjct: 61  KILDPCCGTAGFLIAAMHNMIKKANDETEIKEIRKNQLFGIEEKSYMFTIATTNMILRGD 120

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 +     +  +         K     + NPP+    + +    E           
Sbjct: 121 GKSNLENKDFLKENPA-----QLQLKACTVGMMNPPYSMGSKSNSSLYEIN--------- 166

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                              N L       GR A+++  S          E +I+  +L+N
Sbjct: 167 -----------------FINHLLNSIVEDGRVAVIVPQSTF--TGKTKEEQKIKEEILKN 207

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +E ++ L  + F+R      + I        +    + IN  +   +I          
Sbjct: 208 HTLEGVITLNKNTFYRVGTNPCIAIFKAHNKHPKNKICKFINFENDGYNISKHIGLIDDG 267

Query: 445 ND-DQRRQILDIYVSREN 461
           +  D+++ +LD++  R  
Sbjct: 268 SHRDKKQHLLDVWFERTE 285


>gi|50119533|ref|YP_048700.1| restriction enzyme subunit subunit [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610059|emb|CAG73499.1| restriction enzyme alpha subunit [Pectobacterium atrosepticum
           SCRI1043]
          Length = 623

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 111/315 (35%), Gaps = 54/315 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y   + ++ +   +     +TP  +  L + L     ++           + D 
Sbjct: 293 DVVGQFYGEFL-KYTAGDKKALGIVLTPGHISELFSLLANVGPES----------RVLDI 341

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
             GTGGFL  AM H+       +  +        G E  P+  A+  + M++R    D +
Sbjct: 342 CAGTGGFLISAMQHMLKKAVTEAQRQDIRRNRLIGIENSPKMFALAASNMILRG---DGK 398

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            +L +       + + +  G + +  + NPP+ +                          
Sbjct: 399 ANLHQASCFDDAIIRSV-KGMKPNVGMLNPPYAQS------------------------- 432

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             SD  +  L  +   L     G    AIV  S  +           +R  LL++  ++A
Sbjct: 433 -KSDAELHELYFVKQMLNCLQPGSIGIAIVPMSCAISPNP-------VREELLKHHTLDA 484

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTSIRNEGKKR-RIIND 446
           ++++P +LF    + T + +    +  E    K        D +   +++G+        
Sbjct: 485 VMSMPPELFNSVGVVTCIMVWIAGQPHEYSDRKTWFGYWRDDGFVKTKHKGRIDINHRWP 544

Query: 447 DQRRQILDIYVSREN 461
           D R + + +Y +RE 
Sbjct: 545 DIRDRWVAMYRNREI 559


>gi|110004972|emb|CAK99303.1| hypothetical n-6 adenine-specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 415

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 132/374 (35%), Gaps = 54/374 (14%)

Query: 72  FVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
           F K+    F    S   L    + N  +  +  +  F    +   E+ D S  I+   K+
Sbjct: 46  FCKIYDERFTKPESIIELRAGINENENDVKKRILNIFEKVKRKYKENIDSSDNISLDAKS 105

Query: 131 G-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              +    +N+  IE         ++++ +E  I      +  G   F TPR+VV +   
Sbjct: 106 MVYIVGELQNWCLIE-----AERDIIADAFEIFIGH---ALKGGQGQFFTPRNVVKMMVE 157

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------ADCGSHHK 235
           +L   D+ L          + DP+CG+ GFL +++ ++              A+     K
Sbjct: 158 ILDPNDEDL----------IIDPSCGSDGFLIESLRYIWNKLDIEGKRLDWNAENLKEEK 207

Query: 236 IP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +    ++      A     +L          D  +NI      ++      +F
Sbjct: 208 MEVALNKIREIDKDYFLTRVAKAYMAILGDGKSGIFCEDTLENINTWDYKTRIKIDKGKF 267

Query: 293 HYCLSNPPFGKKWE-------KDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLAN 344
              L+NPPFG K         K  +   K  K+ + G +  G     +   +LF+     
Sbjct: 268 SILLTNPPFGSKIPVRGEEKLKQYELAYKWKKDKKSGIWSKGKLNEKEAPQVLFIERNIQ 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            L+     GG  AIVL      N       + IR W+     I  I+ LP + F   T+ 
Sbjct: 328 LLK----EGGNMAIVLPDGIFGNDT----FAFIRNWIKNQGRILGIIDLPIETFQPNTST 379

Query: 404 ATYLWILSNRKTEE 417
            T + I      E+
Sbjct: 380 KTSVLIFQKLSKEK 393


>gi|149391962|emb|CAL68658.1| restriction-modification enzyme [Thermus scotoductus]
          Length = 1251

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +         TR  +  Y           F   D  +     + A +L KI +    I L
Sbjct: 338 FKFFKNDPDATREKILDYFRRQKYFTNNDFSFLDVHNEQLFYQNAAILLKIVRMLQDIRL 397

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           + D   ++ + +++E+ + +      +    F TP  V      +L  P + +F +    
Sbjct: 398 NGDQ-QNQFLGDMFEYFLDQ---GFKQTEGQFFTPLPVTRFI--ILSLPLETIFSDEQNP 451

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILV--PHGQELEPETHAVCVAGMLI 261
              + D  CG G FLT+  + +     G   K         +G E E     V      +
Sbjct: 452 P-KVIDYACGAGHFLTEMASQLRRLRPGQDVKFYSKFYSEFYGVEKEYRLSKVAKVSAFM 510

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
              +          ++              F   +SNPP+  K   +     +  +   +
Sbjct: 511 YNQDEINIIYADALVRHPDI------PEGAFALLVSNPPYSVKGFLETLPKTERERYELI 564

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
               P     +D    F +  A +L  P    G AAI++ SS L N    +  +  R  L
Sbjct: 565 KTVDPKSYPTNDAIEAFFLERARQLLAP---HGLAAIIVPSSLLSNTD--NIYTRTREIL 619

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           L N  I A+V L    F +T   T    L  +
Sbjct: 620 LRNFDIVALVELGNGTFGKTGTNTVTLFLRRK 651


>gi|25026603|ref|NP_736657.1| hypothetical protein CE0047 [Corynebacterium efficiens YS-314]
 gi|259508264|ref|ZP_05751164.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23491882|dbj|BAC16857.1| hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164152|gb|EEW48706.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 604

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 107/317 (33%), Gaps = 62/317 (19%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L  +  P  +++   E       +       ++ TP+ +  L   L+           P 
Sbjct: 126 LADEYSPQDMLAAADEAF-----ARSGRDGGEYSTPKILTDLIADLI-----------PT 169

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +T+ D  CG GG L  A++H           P     G ++     A   A  +    
Sbjct: 170 EPKTVLDFACGAGGTL-QAIHH---------RFPEATLQGNDINATALATAQARAI---- 215

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 + +        +         F    SNPPFG        AV KE    +  R+
Sbjct: 216 ----PGNWTATWTHRDIIEAGALPADSFDLVCSNPPFGL-------AVNKECLEEQPDRW 264

Query: 325 GPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             G+P +  D   L L H            G A I + +S L   R GS        ++ 
Sbjct: 265 PYGVPSRNDDSKWLQLAH------HALTDSGLAIINVFNSALHARRHGSALPA----MVA 314

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKR 441
           +  + A++ALP +LF  T I + L + +    +     V    ++A     S      K 
Sbjct: 315 DGSLLAVIALPDNLFSNTAIPSALVVFTKN-PDNVSDTVLFATVDA----ASRHKSLGKV 369

Query: 442 RIINDDQRRQILDIYVS 458
             ++ D    +++ Y +
Sbjct: 370 SALDTDD---LVEAYTA 383


>gi|315639044|ref|ZP_07894213.1| N-6 DNA methylase superfamily protein [Campylobacter upsaliensis
           JV21]
 gi|315480872|gb|EFU71507.1| N-6 DNA methylase superfamily protein [Campylobacter upsaliensis
           JV21]
          Length = 695

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 70/458 (15%), Positives = 137/458 (29%), Gaps = 42/458 (9%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            K+A        E+          +  LE  I    +  K   +   F + +  +  A  
Sbjct: 213 EKIAKTDTRYKIEFYEFQKNRDEDKFALEKRIKGLYERYKEK-DSNVFDNAL--ILDADE 269

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +  + +N   I L    +   +   I++     F       A  + TP ++V        
Sbjct: 270 IKFLVENLESISLSETEL--DIKGKIFQKFFEDFF---KGKAGQYFTPPNIVRFVVECFD 324

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKIPPILVP 242
              D L          + DP+CG+GGFL   + ++ +                       
Sbjct: 325 ISKDDL----------VLDPSCGSGGFLLRTLIYMQEESKKLDGEYNQKRFWHSFAEKNL 374

Query: 243 HGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           +G E+           M+I     ++       +  +      + F    F++  +NPPF
Sbjct: 375 YGIEINGGISQAAKMQMIIHDDGHTNVITADGLDSFENFIKKNNKFQKNTFNFIFTNPPF 434

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM----HLANKLELPPNGGGRAA 357
           G      K   E          F   +        L           +       GG  A
Sbjct: 435 GSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSAQKSEILFLERYFEFLKEGGIVA 494

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
            VL    L N         +R +LLE   + A  +LP   F  +   + + + +L  +  
Sbjct: 495 CVLPDGILTNSSL----QNVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSILVLKKKDK 550

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +  +     ++  +   +   +  K  I++     + L   + +E     +M D      
Sbjct: 551 KAIK---AFLDKKEAIQNAITQKHKDEILSLRDELKALITPLQKELKALEKMQDKDLKTQ 607

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            +I  L+    +          L  D    ++S   + 
Sbjct: 608 EQIATLKEKIANHRETYRYKEELVRDKICTEVSEKLKQ 645


>gi|256026504|ref|ZP_05440338.1| N-6 DNA methylase [Fusobacterium sp. D11]
 gi|289764516|ref|ZP_06523894.1| type I restriction modification system M subunit [Fusobacterium sp.
           D11]
 gi|289716071|gb|EFD80083.1| type I restriction modification system M subunit [Fusobacterium sp.
           D11]
          Length = 250

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 112/269 (41%), Gaps = 33/269 (12%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +L+  ++       +  +++  +LS D      +   L+NPPF       K +V++  
Sbjct: 1   MNLLLHDMK-------TPKLKRIDSLSTDYSEENDYSLVLANPPF-------KGSVDESL 46

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +  L R    + K     +LF+      L++    GGR A+++    LF   A +    
Sbjct: 47  LSNTLTR----MVKTKKTELLFIALFLRLLKI----GGRGAVIVPDGVLF--GASNAHKN 96

Query: 377 IRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +R+ L+EN+ +EA++++P+ +F     ++T + I +        G    +   D+     
Sbjct: 97  LRKELIENNQLEAVISMPSGVFKPYAGVSTGILIFTK----TGNGGTDNVWFYDMTADGY 152

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILD 491
           +   KR  + ++    I++ + + EN K  +  D   F  ++  V     +S      + 
Sbjct: 153 SLDDKRNPVEENDIPDIIERFSNLENEKDRKRTDKSFFVPKQEIVDNDYDLSINKYKEIV 212

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILK 520
              +   E  +  +KL  L +S   ++ +
Sbjct: 213 YEKVEYEEPKVILQKLEELSKSIDENLKE 241


>gi|46487195|gb|AAS98975.1| Tgh014 [Campylobacter jejuni]
          Length = 154

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 51/203 (25%)

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             FGY +I + +P  +  + D    A+L + D    KL  L Q+               +
Sbjct: 1   EDFGYTKIIIEKPKSIEALKDDEKFAKLKDKDKILEKLQELEQN------------PQDF 48

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
              E F+         K L VK  KS     I+                           
Sbjct: 49  KNREEFI---------KFLGVKLKKSEENLIID---------------------SDKTNN 78

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E +P   +IQ Y+  EV P+V +++I          E   VGYEI F+++FY Y P RK
Sbjct: 79  TEKIPLKTNIQGYYDTEVKPYVANSWIA--------WESASVGYEILFSKYFYTYTPPRK 130

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L++I+ EL+ +E ++  LL E+ 
Sbjct: 131 LEEINNELEKLEKEVQDLLREIV 153


>gi|91794617|ref|YP_564268.1| N-6 DNA methylase [Shewanella denitrificans OS217]
 gi|91716619|gb|ABE56545.1| N-6 DNA methylase [Shewanella denitrificans OS217]
          Length = 630

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 139/401 (34%), Gaps = 70/401 (17%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            + IA+    G+LY++ K  +       +V     V+ + Y   + ++ +   +     +
Sbjct: 273 DAKIAKKYPKGVLYEVIKEINDNVWPFISVYHNFDVVGHFYGEFL-KYTAGDKKALGIVL 331

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR V  L   +           +     T+ D   GTGGFL  AM+ +       +   
Sbjct: 332 TPRHVTELFCDIA----------NITKKDTVIDICAGTGGFLISAMHRMLKTAMTEEERL 381

Query: 239 ILVPH---GQELEPETHAVCVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
            +  +   G E  P+  A+  + M++R                +++  T+       KR 
Sbjct: 382 DIKKNRLIGIENSPKMFALAASNMILRGDGKANLHQSSCFEPTLKRAITVPDPALGVKRP 441

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  L NPP+ +                            SD  +  L  +   L+L   G
Sbjct: 442 NIGLLNPPYAQS--------------------------KSDAELHELYFVKEMLDLLEKG 475

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G   AI+  S  +         ++++  +L+   ++A++++P++LF+     T + +   
Sbjct: 476 GTGVAIIPVSCVIM-------PNKVKHEILQKHTLKAVMSMPSELFYPVGTVTCIVVFEA 528

Query: 413 RKTEERRG-KVQL-INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            K  +    K        D +   ++ G+             +D+    ++ K SR L  
Sbjct: 529 HKPHKETNKKTWFGYWREDGYVKTKHMGR-------------IDLNHEWQDIK-SRWL-- 572

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
             +    +     +      D   +A    +  + KL+   
Sbjct: 573 EAYSNNEVHAGESVTAYVDADSEWIAEAYLETDYSKLTKKD 613


>gi|254372942|ref|ZP_04988431.1| hypothetical protein FTCG_00513 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570669|gb|EDN36323.1| hypothetical protein FTCG_00513 [Francisella novicida GA99-3549]
          Length = 789

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 113/435 (25%), Gaps = 101/435 (23%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
            T   + E       +    + F+K     F    E     L  +  +    SY+ +   
Sbjct: 235 ETDKFIAETQNTIKWNEKQKQKFIKA--GDFQQAEELEREIL--SLKKAIPPSYMQTLFK 290

Query: 110 NAKAIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
             K  FE    F S      +      I K      L        V    +E  + R   
Sbjct: 291 EVKKAFEKDHIFESNETIRIRESSFEDIVKELEKYNLT--KTGADVKGIAFETFLGR--- 345

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                   F TPR VV     +L    + L          + DP  G+GGFL  A   V 
Sbjct: 346 TFRGELGQFFTPRKVVEFMVDVLDIKQNEL----------ICDPCAGSGGFLIRAFEIVK 395

Query: 229 DCGSHHKIP--------------------------------------------PILVPHG 244
           D      I                                                   G
Sbjct: 396 DKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKYQQVINELNEKQKLEIQYLSKSSIFG 455

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            +  P    V    M++           +        L+ +     RF   L+NPPFG  
Sbjct: 456 TDANPRMARVSKMNMIMHG------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTN 509

Query: 305 WEKDKDAVEKEHKN-------------------------GELGRFGPGLPKISDGSMLFL 339
             KD   V +E K                             G+    L K  + S    
Sbjct: 510 LGKDNSKVSEEDKYTDEKMIAHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATE 569

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +    +       GGR  IVL    L      S   + R +      I  IV+LP DLF 
Sbjct: 570 VLFVERCLDLLKSGGRMGIVLPEGVL----NSSNLQKAREYFESRAKILLIVSLPQDLFV 625

Query: 400 RTN--IATYLWILSN 412
            +   + T L  L  
Sbjct: 626 SSGATVKTSLVFLKK 640


>gi|298674140|ref|YP_003725890.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287128|gb|ADI73094.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 686

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 134/417 (32%), Gaps = 74/417 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG------YSFYNTSEYSL 88
           +      +  +  L        E +L    ++ +  ++  V               E+  
Sbjct: 221 VFKLIFTKLYDETLSQHDKNRIEGFLDNELNDEERANYELVKQTLENFNDRNCRVMEFRN 280

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFED---FDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +        N ++S   S  +  + IF+D   F+ SS+   L       +  K F+   L
Sbjct: 281 TGQTEIELYNKIQSLFDSAKEKWRGIFQDSSRFELSSS--HLSVCISSLQDVKLFNSNLL 338

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   V+   +E+L+ +           + TPR V+ +   +L          +P  
Sbjct: 339 --------VIDEAFEYLVNKSA---KGEKGQYFTPRHVIDMCVKML----------NPKR 377

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVPHGQELEPETHAVCV-AG 258
              + DP  G+ GF    + H+          S      IL   G + + +T  V     
Sbjct: 378 GEYMIDPAAGSCGFPVHTIFHLTGHLFENTEISDEDQEDILKVFGIDFDEKTVRVARTLN 437

Query: 259 ML--------IRRLESDPRRDLSKNIQQGSTL--------------SKDLFTGKRFHYCL 296
           ++        +     D  R          +               S++      F   +
Sbjct: 438 LIAGDGETNVLHLNSLDYERWNEYVNNHNWSQTYGSGYNRLEKLRESRNSNKDFDFDVLM 497

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +   + E         G    KI    +LF+    + L+     GGR 
Sbjct: 498 ANPPFAGDIKESRIIHKYELG---FKNNGKAYSKIGR-DILFIERNLDFLK----SGGRM 549

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL    L      S +  IR ++ E+  I A+V+L  + F       T +  +  
Sbjct: 550 AIVLPQGRL----NNSSDERIREFISEHARILAVVSLDQNTFKPHAGTKTSILFVQK 602


>gi|311899430|dbj|BAJ31838.1| hypothetical protein KSE_60720 [Kitasatospora setae KM-6054]
          Length = 652

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 89/252 (35%), Gaps = 42/252 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E ++ R+    +   E  +TP  +  L   L+      L          ++DP CGT  
Sbjct: 129 FESVLARWKDAYARQVE--VTPEPIAALMVELVAPVGAPLTGP-------VFDPACGT-- 177

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                                    GQE++P+   +    + +           +  ++ 
Sbjct: 178 ---------GTLLLAAAQAGATRLIGQEIDPDLAELSRRRLDLAG-------AGTVTVEA 221

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L+ D F        + NPPFG++                  R+  GLP   D  + +
Sbjct: 222 GDSLTADAFPDCSAPAAVCNPPFGQRHWGRDGLAYD-------SRWAYGLPAQGDPELAW 274

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H+   L    + GGRA I +  +             IR  L+ N  ++A+++LP    
Sbjct: 275 LQHVLAHL----SPGGRAVIAMPPAAASRPSG----RRIRAELVRNGKLQAVISLPPGSA 326

Query: 399 FRTNIATYLWIL 410
              ++   LW+L
Sbjct: 327 STHSMGIDLWVL 338


>gi|258423213|ref|ZP_05686105.1| predicted protein [Staphylococcus aureus A9635]
 gi|257846542|gb|EEV70564.1| predicted protein [Staphylococcus aureus A9635]
          Length = 625

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 141/401 (35%), Gaps = 64/401 (15%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +  N+ +  I +  + AK  ++D  F+       K   L  +       +L        
Sbjct: 227 NHKENDFKVRINNLFNKAKNNYQDI-FNPNEKINLKLSTLAFVVGQMQNFDLSHS--SRD 283

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V    ++  +    +       +F TP  ++ LA  ++          +P +  T+ DP 
Sbjct: 284 VKGLAFQKFVY---AHQRGDRGEFFTPDPIIELAVKMI----------NPKIDETILDPA 330

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPETHAVCVAGMLI 261
           CGTGGFL  A+ HV +     K    +               G +  P+   V    M++
Sbjct: 331 CGTGGFLVAALKHVEESIIDLKAERPIDFEKAKTDYALRKLRGIDFNPDLVKVSKMRMIL 390

Query: 262 RR------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
                    +++    L +   Q      +          L+NPPFG+K       + ++
Sbjct: 391 EDDGHTGIFQANSLDTLREIEIQALKSGANNINENSVDIILTNPPFGRKGTITDKDILRQ 450

Query: 316 HKNGELGRFGPGLPKISDG-------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           ++ G          + S          +LF+      L+      G+ AIVL  S L   
Sbjct: 451 YELGHQWVKNNDSYENSHKVLDDQVPDILFIERCYQFLK----NKGKMAIVLPDSVL--- 503

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSN--RKTEERRG---- 420
             G     +R ++L+   +  +V+LP + F     N+   + +L     KT E       
Sbjct: 504 -TGPKLQYVRNYILKRFKVVGVVSLPYETFIPHGANVKASILLLQKLDSKTMEELNTDGY 562

Query: 421 KVQLINATDL-------WTSIRNEGKKRRIINDDQRRQILD 454
           +  +++   +        T I    +K + I D+   +ILD
Sbjct: 563 ESFMVDIEKIGYQGNKNGTLIYKIDEKGQYILDENGNKILD 603


>gi|72161753|ref|YP_289410.1| type I restriction system adenine methylase [Thermobifida fusca YX]
 gi|71915485|gb|AAZ55387.1| putative type I restriction system adenine methylase [Thermobifida
           fusca YX]
          Length = 558

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 37/224 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +++DP CG G  L                 P     GQ+++P    +         L ++
Sbjct: 176 SVFDPACGLGSLLLAVG------------APDAQRTGQDIDPHAARLAQ-------LRAE 216

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGP 326
                +  ++ G +L  D +   R    + +PP     W +++  ++         R+  
Sbjct: 217 LEYSTTAEVRVGDSLRADAWPDHRVELVVCDPPTSNADWGREELLLD--------TRWEL 268

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP  ++  + +L H           GGRA +V+S+S  +          IR  ++   L
Sbjct: 269 GLPPRAEAELAWLQHAYAH----TAPGGRAIVVMSTSAAYRRTG----RRIRSEMVRRGL 320

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATD 429
           +  ++ALP  L    +   +LW+L    +E +   +V++++ +D
Sbjct: 321 LTDVIALPAGLASAHSQPVHLWVLRRPTSESDAATEVRMVDMSD 364


>gi|302530957|ref|ZP_07283299.1| predicted protein [Streptomyces sp. AA4]
 gi|302439852|gb|EFL11668.1| predicted protein [Streptomyces sp. AA4]
          Length = 583

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 89/298 (29%), Gaps = 64/298 (21%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           + L          +  +E L  RF    +       TP     L   L            
Sbjct: 110 LALISQLASSEGAAETFEQLCDRFFEAHARRL--SPTPTAYADLMVRLTG---------- 157

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + DP CG G                          GQ+++P+T  +    + + 
Sbjct: 158 -AKGAKVLDPACGFGS--------------LLLAAAATRARGQDVDPDTARIAGIRLRLH 202

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
             +++              L  D F G+     L +PPF ++    ++ V          
Sbjct: 203 GADAEVYA--------ADALRADAFAGRLADVVLCDPPFNERGWGHEELVGD-------A 247

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  GLP   +  + ++ H    ++      G A  VL        R+G     IR  LL
Sbjct: 248 RWEYGLPPRGESELAWVQHCLAHVKP-----GGAVAVLMPGAAAGRRSG---KRIRANLL 299

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI------NATDLWTSI 434
               + A+  L           T LW+L+  + E R     LI      +   LW   
Sbjct: 300 RAGALRAVCTLAPG--------TDLWLLTRPEPERRAPATVLIADTTADDVEQLWQDF 349


>gi|145641588|ref|ZP_01797165.1| N-6 DNA methylase [Haemophilus influenzae R3021]
 gi|145273635|gb|EDK13504.1| N-6 DNA methylase [Haemophilus influenzae 22.4-21]
          Length = 676

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 117/399 (29%), Gaps = 70/399 (17%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF- 140
              E+  S   S      + S  +  S + +      +       L K     K    F 
Sbjct: 264 QIEEFLKSRGISEQKYQLMLSSFSQISKDEQRDEPMENDKEVAKLLSKPSSTNKQVFTFI 323

Query: 141 -SGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
              I    D     +  M  +Y   + ++     +     +TP  V  L   +L      
Sbjct: 324 YENIFKSIDGFGGHIDMMGELYSEFL-KYALGDGKELGIVLTPPYVTKLMAQIL------ 376

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------PILVPHGQ 245
                      + D   G+ GFL  AM  + D                          G 
Sbjct: 377 ----GINSSNRVMDLATGSAGFLISAMELMIDDAQKQFGKGTTKANELITQIKQNQLLGV 432

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E + +    M++R   S      S   +  S     LFT  +    L NPPF    
Sbjct: 433 ELNAEMYTLAATNMILRGDGSSKIEKGSAFNRPDS-----LFTNFKADRILLNPPFSYDE 487

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                                         M F+ +  +K+      GG  AI++  S  
Sbjct: 488 NG----------------------------MPFIAYGLDKM----EKGGLGAIIIQDSAG 515

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
                 +      + +L+   + A + +PTDLF     + T ++I    K  +    V+ 
Sbjct: 516 SGKAVSTN-----QKILKKHSLLASIKMPTDLFQPMAGVQTSIYIFEAHKPHDIDNIVKF 570

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           I+ ++                 ++   +L IY + +N K
Sbjct: 571 IDFSNDGYKRTERSLSEIDHPVERYADMLKIYKAGKNAK 609


>gi|114775501|ref|ZP_01451069.1| type I restriction-modification system methylation subunit
           [Mariprofundus ferrooxydans PV-1]
 gi|114553612|gb|EAU55993.1| type I restriction-modification system methylation subunit
           [Mariprofundus ferrooxydans PV-1]
          Length = 193

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 8/179 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L  ++ K A  L G    +DF   I P  L  R+    +       E+        
Sbjct: 2   SLSQLEQYLSKAAWILKGPVDASDFEVYIFPLLLFNRISDVYDEEFRIALEESDGDKEYA 61

Query: 67  --IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              +   F    G  + +  E S +   +      L     +  +    IF D  +S+  
Sbjct: 62  LLPEFHRFEIPEGCHWRDVRETSTNVGQA--IEKALRGIEQANQEYLYGIFGDAQWSNKN 119

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--EDFMTPR 181
              ++  LL  + ++FS   L   +V   ++ N YE+LI+ F   V++ A    F++PR
Sbjct: 120 KLSDR--LLVDLVEHFSQYTLGNMSVDPDMLGNAYEYLIKHFADLVNKKATLSFFISPR 176


>gi|225568966|ref|ZP_03777991.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM
           15053]
 gi|225162465|gb|EEG75084.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM
           15053]
          Length = 621

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 99/288 (34%), Gaps = 41/288 (14%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L++              TP  V  L   LL                 + D  CGTG +  
Sbjct: 129 LLQAVLELEGWSGTYQSTPASVQKLVAELLSGSQAKH----------MLDLCCGTGLYGL 178

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              + ++         P L   G E+EP    +    + +  +E              ST
Sbjct: 179 TLYHKLSREN------PALTFCGIEVEPVLCDIADINLYLHGVERGRIVKTDLLALPRST 232

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           +       +     + + P G    +  D  +         R      +      +F+  
Sbjct: 233 V------EELADLIVMDIPRGNNVAETYDRRDY--------RLIHFDKQHIYSDWIFIQD 278

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              +L    N  GRAA++ +S  L        E  +R  ++ +D +EA++ LP++L+ R 
Sbjct: 279 ALYRL----NVKGRAAVLATSGALIRL----NEKGLREQIVLSDWLEAVITLPSNLYPRM 330

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            I T L I +  K  ERR K+  I+ +  +   + E +    + ++  
Sbjct: 331 GIGTELLIFNKNKRPERREKILFIDISSYY---KIEKRNMCAVTEEGI 375


>gi|111224792|ref|YP_715586.1| putative Type I restriction-modification system, M subunit [Frankia
           alni ACN14a]
 gi|111152324|emb|CAJ64058.1| Hypothetical protein; putative Type I restriction-modification
           system, M subunit [Frankia alni ACN14a]
          Length = 845

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 131/432 (30%), Gaps = 85/432 (19%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
           + G      +  ++     LR  +     + + +R+   A      D +  ++  G    
Sbjct: 199 VRGSASAAVYLHLVTGLLFLRHSD---PASWAGLRDDVHAASDRQSDPQRLIRRIGG--- 252

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                    + +      L S                  S   AR   A L     ++  
Sbjct: 253 --------RIEAARAAQGLPS------------------SPGKARTSFAALGGPAAEDLG 286

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I    + +P  V  +    L+R +    +       TPR +V L  AL +   D +   
Sbjct: 287 QIMRRCEDLPRTVFGD----LLRHYELWDTHSGPPATTPRSLVELIMALFVRAGDQVH-- 340

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  L+DP    G  L  A           K    +   G   +P+   +   G+ +
Sbjct: 341 -------LHDPYARAGEMLLGA----------WKAAGSVTLSGSGADPDLCRLAEMGIRL 383

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
              ++            GS               ++NPPF     +              
Sbjct: 384 SGGQARLTP--------GSPTPWREAPAALADLIVTNPPFNATSTR-----------APY 424

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             +    P   + +  +L H+   L      GG+A +V+ +    +      E  +R+ +
Sbjct: 425 DTWLFDPPPAHNDNYAWLQHVLASL----APGGKAGVVMPNRAAASDD--DREQRLRQHM 478

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L+   +E IVALP  LF  T +A  LW L    T      V  +              ++
Sbjct: 479 LDTGTVEFIVALPRQLFAPTRVAAMLWGLRAPGTRP-GDDVLFL----EVHGRGQVSGQQ 533

Query: 442 RIINDDQRRQIL 453
           RI+   +   ++
Sbjct: 534 RILTTAEISTVV 545


>gi|301513071|ref|ZP_07238308.1| putative restriction-modification protein [Acinetobacter baumannii
           AB058]
          Length = 427

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 29/206 (14%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  +L     + ++ K    ++L   ++   +  + +E+ +++  +  +    ++ TPR 
Sbjct: 234 TNLQLTNPVAVKEMIKELDKLKLS--SIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRH 290

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHKI 236
           +      L+          +P     +YDP CGTGGFLT+A +H+ D        S    
Sbjct: 291 ITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIK 340

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G+E+      +    M++         D    I Q  TL   + +   +   +
Sbjct: 341 LKHNTIFGREITSN-AKLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVI 390

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELG 322
           +N PF +K         K  KN   G
Sbjct: 391 TNMPFSQKTSYSHLYENKLAKNDGDG 416


>gi|187729745|ref|YP_001837336.1| type I restriction-modification system M-subunit-like protein
           [Acidithiobacillus caldus]
 gi|167782130|gb|ACA00201.1| type I restriction-modification system M-subunit-like protein
           [Acidithiobacillus caldus]
          Length = 856

 Score =  100 bits (250), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 109/399 (27%), Gaps = 121/399 (30%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLI 163
               +  KA ++  D  +   +L+ +   ++   K     +L      D +    +E  +
Sbjct: 186 DGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQLERFDLS--KTGDDIKGLAFEKFL 243

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               +        F TPR VV     LL          +P     + DP  G+GGFL  A
Sbjct: 244 G---TTFRGELGQFFTPRPVVEFMVDLL----------NPREGERICDPASGSGGFLIRA 290

Query: 224 MNHVADCG------------------------------------------SHHKIPPILV 241
             HV                                              S     PI  
Sbjct: 291 FEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEEAFSRLNRELLPSDDNNKPIDT 350

Query: 242 PHGQ---------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-TLSKDLFTGKR 291
             G+         + EP         M++         D    I      L  +   G R
Sbjct: 351 RVGRLAWQCIYGTDAEPRAARTAKMNMIMHG-------DGHGGIHYHDGLLDINGIFGGR 403

Query: 292 FHYCLSNPPFGKKWEKDK-----DAVEKEHKNGELGR-----FGPGL------------- 328
           F   L+NPPFG    +D+     D          L R     +GP               
Sbjct: 404 FDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCREGGYGPAWEESHQSLLAAAAA 463

Query: 329 -------------PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         K     ++F+    N L+     GGR  IVL    L         +
Sbjct: 464 RKPILDLFEIGKGKKNRPTELIFVERCLNLLKP----GGRMGIVLPDGNL----NNPSLA 515

Query: 376 EIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
            +RRW      + A+V+LP   F      +   L  L  
Sbjct: 516 WLRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRK 554


>gi|256026503|ref|ZP_05440337.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Fusobacterium sp. D11]
          Length = 296

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 102/274 (37%), Gaps = 34/274 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+      +   +EK LA    NID +            ++   L         
Sbjct: 35  LIFMKRLDQE---EQRKEKEKKLASIFGNIDEKFIFDEKHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  D+ +++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  IRNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSG--KNGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++              +K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
                 +  +++  +LS D      +   L+NPP
Sbjct: 258 ------TPKLKRIDSLSTDYSEENDYSLVLANPP 285


>gi|237750950|ref|ZP_04581430.1| N-6 DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373395|gb|EEO23786.1| N-6 DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 584

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 111/359 (30%), Gaps = 43/359 (11%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            K+A        EY          +  LE  I    +  K   ED +       L+   +
Sbjct: 213 EKIAKTDTRYKIEYYEFQKNRDEDKFALEKRIKGLYEKYKK--EDSNVFDNALILDADEI 270

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            + + +N  GI L    +   +   I+++ ++ F       A  F TP +VV        
Sbjct: 271 KF-LVENLEGIGLS--KIELDIKGEIFQNFLKDFF---KGKAGQFFTPFNVVRFV----- 319

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------------- 239
                +          + DP+CG+GGFL   + ++ +   +H                  
Sbjct: 320 -----IGCFDITQNDLVLDPSCGSGGFLLRTLLYMREKCENHYKDKNDEVQKFLCWHSFA 374

Query: 240 -LVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
               +G E+           M+I     ++       +  +      + F    F++  +
Sbjct: 375 EKNLYGIEINGGISQAAKMQMIIHDDGHTNVITADGLDSFENFIRKNNKFQKNTFNFIFT 434

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM----HLANKLELPPNGG 353
           NPPFG      K   E          F   +        L           +       G
Sbjct: 435 NPPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSGQKSEILFLERYFEFLKEG 494

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWIL 410
           G  A VL    L N         +R +LLE   + A  +LP   F  +   + + + +L
Sbjct: 495 GIVACVLPDGILTNSSL----QNVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSILVL 549


>gi|297561676|ref|YP_003680650.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846124|gb|ADH68144.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 626

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 104/285 (36%), Gaps = 53/285 (18%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           ++L  + +       ++E L         E      +P ++      L            
Sbjct: 121 VDLADEVLAGDDPEPVFEEL---CARLARERGRAETSP-ELAAWMAELAGIG-------- 168

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI- 261
                ++ DP CGTG  L+ A+   A           L   GQ+ +P+   +  A +++ 
Sbjct: 169 --AGSSVLDPACGTGVLLSAALRRGA-----------LTVFGQDRDPDALDIATALLVVP 215

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             + +  +         G +L    F   R    L +PPF  +    +D V+        
Sbjct: 216 HGVSATAK---------GDSLRSPAFESSRVDVVLCDPPFRDREWGYEDLVDD------- 259

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  GLP   +G + ++ H  +++      GGRA ++L +S  +      G   IR  L
Sbjct: 260 PRWVHGLPPRGEGELAWVQHCLSRVRP----GGRAVVLLPASVAYR----PGGRRIRANL 311

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLI 425
           L +  + A++ +P           ++W+L   +     G  V L+
Sbjct: 312 LRSGALRAVLEVPGG--AGAEPGRHVWVLVRPEESHGTGDGVLLV 354


>gi|327404935|ref|YP_004345773.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327320443|gb|AEA44935.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 671

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 116/357 (32%), Gaps = 84/357 (23%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V    YE ++    + + + A  F TPR++V     +L           P     
Sbjct: 301 DASIDVKGMAYETIVS---NTLKQEAGQFFTPRNIVKAMVEML----------DPTETDR 347

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------------LVPHGQ 245
           + DP CG+GGFL   ++HV    +    P +                           G 
Sbjct: 348 VLDPACGSGGFLVMVLDHVRKKITEQMFPDLDGPLLAEKYNTYEVNEKVREYAENNIFGF 407

Query: 246 ELEPETHAVCVAGMLIRR----------------------LESDPRRDLSKNIQQGSTLS 283
           + +P+        M++                        +E       +        LS
Sbjct: 408 DFDPDLKKAARMNMVMAGDGHANIFHVNSLAYPNWEHPAEIEKINMSINNSLRNMKDDLS 467

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHL 342
                  +F    +NPPFG K + +++   +             L K SD   +LF+   
Sbjct: 468 YGSDARGKFDVIFTNPPFGAKVKVEQEIASR-----------YFLSKYSDAPEVLFIEAC 516

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT- 401
            + L+     GG+ AIVL    L           +R W+LE   I A + L  + F    
Sbjct: 517 YDFLK----EGGKMAIVLPDGIL----GNPNTIHVREWILEKFKILASIDLAVEAFLPQV 568

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-----IINDDQRRQIL 453
            +   L  L  +   ER   +   +  +++ +I  +  K R      + D+   ++L
Sbjct: 569 GVQASLLFLQKKSELERNLALDGDDDYNVFMAIAEKLGKDRRGNPIYLRDEDGAELL 625


>gi|323438356|gb|EGA96133.1| hypothetical protein SAO11_2769 [Staphylococcus aureus O11]
          Length = 123

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +  +     + +I+   TL    F G  F  
Sbjct: 1   KETQVYRYFGQERNNTTYNLARMNMLLHDVRYE-----NFDIRNDDTLENPAFLGTTFDA 55

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L    +  G
Sbjct: 56  VIANPPYSAKWTADSKFENDERFSGYGK-----LAPKSKADFAFIQHMVHYL----DDEG 106

Query: 355 RAAIVLSSSPLFNGRA 370
             A+VL    LF G A
Sbjct: 107 TMAVVLPHGVLFRGAA 122


>gi|32266590|ref|NP_860622.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449]
 gi|32262641|gb|AAP77688.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449]
          Length = 563

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 143/395 (36%), Gaps = 57/395 (14%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP ++  L   LL               +++Y+P  GTG       N+          
Sbjct: 121 YSTPLEINELLVGLL----------DIKESQSIYNPCYGTGSLFFAIANYA--------- 161

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G+ELE     +      I  L        ++++   + L    F  ++F   +
Sbjct: 162 -HSFELYGEELESSLARIAKIICKILDLN-------TQHLILNNILKNAQFKNQKFDKII 213

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            NPP         D+        E  RF        +   +LFL+H  + L+       +
Sbjct: 214 CNPPL--------DSHIGTQFLKEDERFATYEALIKTYPELLFLIHSLSHLKD------K 259

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              +L +  L      S E  +R  L E  LIE+I+ LP ++F        + +LS    
Sbjct: 260 GVFILRTQTLLKS---SLEGRLREKLCEEGLIESIIELPKNIFPHQTHEFSIIVLSPNNR 316

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
                 +  INA +       +GK  R++N    +++L+IY  +  G +S +        
Sbjct: 317 A-----ILHINA-NAPHFYHKDGKYNRLVN---LKELLNIYRHKYVGTYSSLTPLSEIDP 367

Query: 476 RRIKVLRPLR--MSFILDKTGLARLEADI-TWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
             ++V R ++   S   + T L  L  ++   +++    +   +      +     +G++
Sbjct: 368 HDLRVARYIQEPQSSRKNHTLLGALNINVFRGQRVYGSAKDEKITYFDLGIADFMDFGFS 427

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
           +    + +K +++K  K +     I   I     K
Sbjct: 428 DELSTQRLKGDKSKIEKYQLKPYDIALSIRGTTPK 462


>gi|296285046|ref|ZP_06863044.1| N-6 DNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 866

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 108/323 (33%), Gaps = 64/323 (19%)

Query: 138 KNFSGIELHPDTVPD---------------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +  S IEL P TV D                +    +E  +        +G   + TPR 
Sbjct: 246 EKKSDIELSPGTVADLLEKLQPFSVRSEDVDLKGRAFEEFLP--SQLRGKGLGQYFTPRP 303

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------- 229
           +V     L              +  TL D  CG+GGFL +A   + +             
Sbjct: 304 LVEFMCDLA----------EVSLSDTLLDFACGSGGFLINAYERMREEVELIPAGTLQRL 353

Query: 230 ---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK------NIQQGS 280
                S  +        G + EP         ML+        R  +             
Sbjct: 354 GETRESLIEDVKSKQIFGIDAEPRAARTARMNMLLWGDGRCVMRGNALASQDLTGKPYPI 413

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +  K           L+NPPFG + +  +  V K++  G   R      K     +LF+ 
Sbjct: 414 SPYKKSDNNSGCSLILANPPFGAREK--EQKVLKKYIFGSKKR----QRKSQKTEVLFVE 467

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L       GR AIVL +  L    +    S++R ++  +  + A+V+LPT  F +
Sbjct: 468 RAMELLRPE----GRMAIVLPTGLL----SADTYSDLRGFIARHAKVNAVVSLPTHAFVQ 519

Query: 401 TNIAT-YLWILSNRKTEERRGKV 422
           + + T    IL  +K  E   K+
Sbjct: 520 SGVPTVNTVILYVQKHSESSRKI 542


>gi|307128877|ref|YP_003880893.1| type I restriction-modification system methyltransferase subunit
           [Dickeya dadantii 3937]
 gi|306526406|gb|ADM96336.1| Type I restriction-modification system methyltransferase subunit
           [Dickeya dadantii 3937]
          Length = 142

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ YLA 
Sbjct: 4   QDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFYLAE 63

Query: 63  GGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
             S IDL     +VA +SFYNTSEYSL TLG+++T +NLE YI+ ++ N 
Sbjct: 64  KQSGIDLGLVLPEVARFSFYNTSEYSLETLGASDTGDNLELYISQWAMNL 113


>gi|261884854|ref|ZP_06008893.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 156

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L++ +L++AI+ LP +LF+ T I   + I    +T      V  I+A+  +   
Sbjct: 1   GKIRQKLIDQNLLDAIIGLPANLFYGTGIPACIMIFKKNRT---NNDVLFIDASSEFYKD 57

Query: 435 RNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           +N+ +    +ND    +I   Y  R +  K++ +            +  P  +    ++ 
Sbjct: 58  KNQNR----LNDALIAKIAXTYNDRISVDKYAYLATIEQIEQNDYNLNIPKYVDTYEEEK 113

Query: 494 GLA 496
            + 
Sbjct: 114 PID 116


>gi|327413128|emb|CAX68157.1| putative restriction endonuclease, alpha subunit [Salmonella
           enterica subsp. enterica]
          Length = 629

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 62/352 (17%)

Query: 121 SSTIARLEKAGLLYKICKNFSG-----IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            +  AR    G+  KI ++        I ++ D     V+   Y   + ++ +   +   
Sbjct: 268 DTKTAREYPDGVFKKIIEDICEQVWPYINVYHDF---DVVGQFYGEFL-KYTAGDKKALG 323

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             +TPR +  L + L           +      + D   GTGGFL  AM H+       +
Sbjct: 324 IVLTPRHIAELFSLLA----------NVNPESRVLDICAGTGGFLISAMQHMLKKAVTDE 373

Query: 236 IPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               +      G E  P+  A+  + M++R  +       +    +  T S       + 
Sbjct: 374 QRQDIRRNRLIGVENSPKMFALAASNMILRG-DGKANLHQASCFDEAITSS---IKKMKP 429

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  + NPP+ +                            SD  +  L  +   L     G
Sbjct: 430 NVGMLNPPYAQS--------------------------KSDAELHELYFVKQMLTCLEPG 463

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
               AIV  S  +           +R  LL+   ++A++++P +LF+   + T + +  +
Sbjct: 464 SIGIAIVPMSCAISPNP-------VREELLKYHTLDAVMSMPAELFYPVGVVTCIMVWIS 516

Query: 413 RKTEERRG-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSREN 461
                    K        D +   +++G+          R + +D+Y +RE 
Sbjct: 517 GVPHAVSDRKTWFGYWRDDGFVKTKHKGRIDLNEKWPAIRDRWVDMYRNREI 568


>gi|260589500|ref|ZP_05855413.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583]
 gi|331082930|ref|ZP_08332050.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540068|gb|EEX20637.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583]
 gi|330399925|gb|EGG79583.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 588

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/468 (14%), Positives = 152/468 (32%), Gaps = 53/468 (11%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           +E   +           + LS + +   N R        +         + ++      R
Sbjct: 5   IEEIWRELKRKVPLEQIFYLSLVLAFCQNQRKEKGKITQAGVKEVLERIQGYNLRVAFTR 64

Query: 127 LEK----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           + +      L  K  +    IE+            + E L +   ++  +      TP +
Sbjct: 65  IFQFIRWEILDDKDIEEMFQIEVSLFREYLEKGGKLSE-LFQMIFAQAGKWDVYAPTPTE 123

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L   +L                 + D  CG  G   +    +            +  
Sbjct: 124 VRKLIVDILGFHKA----------HRIADFCCGGAGLGLELWKRLTIRNKE------VSF 167

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           HG+EL      +C A  L       P  ++    ++      D    + +   + + P G
Sbjct: 168 HGEELN---RNLCDAAQLYFSAYEVPDGEIE---ERDILTIPDTAESQSYDIIVLDIPRG 221

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +           E  + +  R      K      +F+  +  +L+      G AA++++ 
Sbjct: 222 QNVT--------EVYDEKDPRLLCFNKKNIYSDWIFIQDVLYRLK----KTGTAAVLVTP 269

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L        E  +R  ++ ND +EA++ LP +L+ +    T L I +  K   R+GKV
Sbjct: 270 GALTR----VNEEILREQIVVNDWLEAVITLPENLYSKYYAGTELLIFNKDKESSRKGKV 325

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLDYRTFGYRRIKVL 481
             I+ +  +   + +G++   I +    Q+ +I+  S E    S +         +    
Sbjct: 326 IFIDISKEF---KRQGRRTVEITEAGLLQVREIFVHSWEVKGVSAVCSREQIQKNQYS-- 380

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              + S  + +       +++    ++ + +   +     +++    Y
Sbjct: 381 --FKPSQYIQQEDEWEFVSELVLEDIAQITRGAQVPKRADVVEDGDVY 426


>gi|224437223|ref|ZP_03658200.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313143683|ref|ZP_07805876.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128714|gb|EFR46331.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 561

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 131/402 (32%), Gaps = 59/402 (14%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP ++  L   +L                ++Y+P  G G       NH  +       
Sbjct: 120 YSTPLEINELLVGIL----------DIKETESVYNPCYGMGSLFFAICNHAKNVE----- 164

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G+ELE     +         +        S+++   + L+   F   +F   +
Sbjct: 165 -----LYGEELESTLAKIAK-------ITCKILNLSSQHLVLNNILTNAQFKHHKFDKII 212

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP            ++   +             +   +LFL+H  + L+       + 
Sbjct: 213 CNPPLDSHIGTQFLKEDERFSS-------YETLIKTYPELLFLIHSLSHLKD------KG 259

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             +L +  L      S E  +R  L E+ LIEAI+ LP ++F        + +LS     
Sbjct: 260 VFILRTQTLLKS---SLEGRLREKLCEDRLIEAIIELPKNIFPHQAHDFSIIVLSQN--- 313

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
                +  INA +     R +GK  R+IN      +L +Y  +   + S +   +     
Sbjct: 314 --NDSILHINA-NTPHFYRKDGKYNRLIN---LSSLLALYKHKATSEHSTLTPLKQINPH 367

Query: 477 RIKVLRPLRMSFILDKTGLARLEADIT---WRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            + V   L          L   +  ++    +++    +   +      +     +G+ +
Sbjct: 368 DLSVGYYLHKPKQEVADSLYLKDLQVSIFRGQRVYGSPKDEKITFFDLGVADFAEFGFCD 427

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINA----FGRKDPRA 571
            F  +  K ++ K  K       I   +      F    P A
Sbjct: 428 EFSTQRFKGDKTKIKKYALKPYDIAISLRGNTPKFTILSPEA 469


>gi|330467197|ref|YP_004404940.1| hypothetical protein VAB18032_16170 [Verrucosispora maris
           AB-18-032]
 gi|328810168|gb|AEB44340.1| hypothetical protein VAB18032_16170 [Verrucosispora maris
           AB-18-032]
          Length = 696

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 102/275 (37%), Gaps = 38/275 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E+L  R+ S     +    TP  V  +  AL                   +D T GTG
Sbjct: 167 AFEYLHNRYVSSAHSMSGLAGTPDTVAEVMLALA------------ESGANTFDFTSGTG 214

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL--SKN 275
             L  A +     G+  +       + QE+ P+   + +  + +  L +    D      
Sbjct: 215 SILRIAADKALTRGTATRC------YAQEISPQYALITLLRLWLLHLRARRSMDNAEPPV 268

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           ++ G +L  D     R    ++N PFG   W  D+ A +         R+  GLP  ++ 
Sbjct: 269 VRVGDSLLADALPDLRADVVVANFPFGIHDWGHDRLAYD--------PRWTYGLPPRTEP 320

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + ++ H    L       G A ++L  +             +R  L+    + A+VALP
Sbjct: 321 ELAWVQHALAHL----APSGTAVVLLPPAAASRPAG----RRVRAELIRRGALRAVVALP 372

Query: 395 TDLFFRTNIATYLWILS-NRKTEERRGKVQLINAT 428
             L   T I  ++W+L+     +   G + +++ T
Sbjct: 373 AGLMPPTAIGLHIWVLTQPDPDQPPPGDILVVDTT 407


>gi|332669269|ref|YP_004452277.1| N-6 DNA methylase [Cellulomonas fimi ATCC 484]
 gi|332338307|gb|AEE44890.1| N-6 DNA methylase [Cellulomonas fimi ATCC 484]
          Length = 633

 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 100/300 (33%), Gaps = 42/300 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             A  +    +    +EL     P  V+   ++ ++      V      F TPR +V   
Sbjct: 90  NDAAAVRDALRALRDVELS--DAPAHVVGEAFQAVVG---PRVRGEKGQFFTPRSLVAAM 144

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            A++           P     + DP  G+GGFL +A                    G + 
Sbjct: 145 VAIV----------DPQPGEKVVDPAAGSGGFLVEA------HAHAAGRGGAATVVGGDK 188

Query: 248 EPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           + +   +  A + ++   ++ P    S ++   S ++        +   L+NPPFG +  
Sbjct: 189 DFDLFRLQTALLAMVAGDDAHPHHQNSLDLDAWSHVAAGGLG--TYDVVLANPPFGARIG 246

Query: 307 KDK-------DAVEKEHKNGELG--RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            +        D      ++   G  R    + +  D  +LFL      L      GGR  
Sbjct: 247 VEDQALLGRYDLAHVWSRDPRTGGWRRTDTVDRSRDPQILFLELCVRLLRP----GGRMG 302

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE 416
           IVL           +G + +  WL     IEA++  P   F   T+  T +        +
Sbjct: 303 IVLPEGVF----GNAGSAYVWEWLRTQGAIEALLDCPRTTFQPGTDTKTNVLFFRKDAPQ 358


>gi|16415962|emb|CAC85954.1| AloI restriction modification enzyme [Acinetobacter lwoffii]
          Length = 1262

 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 102/579 (17%), Positives = 192/579 (33%), Gaps = 54/579 (9%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L +L   +E               S+ DL   ++    S  +       T  + N   
Sbjct: 272 LFLCKLVDEIENPNDLKFYWKGVAYDSHFDLMDRLQQLYQSGMDKFLGEDITYINQNDVT 331

Query: 99  NLESYIASFSDNA----------KAIFEDFDFS-----STIARLEKAGLLYKICKNFSGI 143
           N   +I    D            +  F + DFS     +     + A +L K+ + +  I
Sbjct: 332 NALRFIRQKPDATHRAVWNLFVKQKFFTNNDFSFLDVHNERLFYQNAEVLLKVLQMWQDI 391

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L   T  ++ + +++E  + +    V +    F TP  +      L+  P ++L +++P
Sbjct: 392 RLTSATGHNQFLGDMFEGFLDQ---GVKQSEGQFFTPMPICRFI--LMSLPLESLVRDNP 446

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCV-- 256
                + D  CG G FLT+           HK       +     G E E     V    
Sbjct: 447 TPPMAV-DYACGAGHFLTELALQFQPLLEQHKPLAAPAEYHKSMVGIEKEYRLSKVAKVS 505

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           A M   +       D   N  +     +D      F   ++NPP+  +     + + +E 
Sbjct: 506 AFMYGHQGIQVCYGDGLVNSHEAFPDIRDGH----FDLLVANPPYSVR--GFLETLPEED 559

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +            + ++           + +     GG AAI+L +S L NG  GS    
Sbjct: 560 RKAYSLTNTINDTETANS---IETFFIERAKQLLKSGGVAAIILPASILSNG--GSAYIR 614

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            R  LL+   I AI    +  F +T   T    L  ++T+    +       + + S   
Sbjct: 615 AREILLQYFDIVAIAEFGSGTFGKTGTNTVSLFLRRKRTQPDTAEHYRERIEEWFKSCTT 674

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDK-- 492
             +K+ +  D     +++ Y +  N     + DY++F  G      +         DK  
Sbjct: 675 SKRKQVLYKDGH---LIEKYCAHINVP---LADYQSFLRGEAEGSWMSHEHFQSYHDKFD 728

Query: 493 --TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
             T LA L     ++ LS   Q+  +                  F   S ++N    ++ 
Sbjct: 729 TSTELANLRKQRKFKALSEYEQTAEIAKRYLGYVHSIERDKLYHFCLASDQTNPVLIIRS 788

Query: 551 KASKSFIVAFIN---AFGRKDPRADPVTDVNGEWIPDTN 586
            +    +  F+    +  + D     + D +G+ +    
Sbjct: 789 PSGTKEMKQFLGYEWSSAKGDEGIKLIEDTSGKHVTKLY 827


>gi|254369302|ref|ZP_04985314.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122252|gb|EDO66392.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 776

 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 98/586 (16%), Positives = 159/586 (27%), Gaps = 137/586 (23%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICK 138
           F    E        T+  N+  S+I    +  K  FE    F        +      I K
Sbjct: 175 FKRLRENFREIHKGTSQEND--SFIQYRFEQVKREFEKDHIFEPNETIRIRESSFEDIVK 232

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                 L        V    +E  + R           F TPR VV     +L    +  
Sbjct: 233 ELEKYNLT--KTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIKQN-- 285

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------------- 237
                     + DP  G+GGFL  A   V D      I                      
Sbjct: 286 --------ELICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQRKVFGENLENIDDEK 337

Query: 238 -----------------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                                        G +  P    V    M++           + 
Sbjct: 338 LKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------DGHNG 391

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---------------- 318
                  L+ +     RF   L+NPPFG    KD   V +E K                 
Sbjct: 392 IHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDI 451

Query: 319 ---------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                       G+    L K  + S    +    +       GGR  IVL    L    
Sbjct: 452 YEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLKAGGRMGIVLPEGVL---- 507

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSN----RKTEERRGKVQ 423
             S   + R +      I  IV+LP DLF  +   + T L  L       + ++++G ++
Sbjct: 508 NSSNLQKAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQKQDKKGLLR 567

Query: 424 LI-------NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY- 475
            +         TD +        K   ++ +      D++VS  NG  +R        Y 
Sbjct: 568 FVRFEQLQRWDTDFFKQKEGYSSKYETVSYE------DLFVSLNNGIAARNYASDGIRYL 621

Query: 476 -------RRIKVLRPLRMSFILDKTGLARLEADITWR-------------KLSPLHQSFW 515
                    I   +P  ++   +   + +    IT +                   + F 
Sbjct: 622 KVSDIKDNYINNDKPFYVNKYKESDLIEKGTLLITRKGTVGNSYYLDKDGSFVASSEIFI 681

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           + +   +           SFVK+  +     T+    S+  + + +
Sbjct: 682 IKLNDKVNGNYLSEINLSSFVKKQYREKSTGTIMPSLSQPKLKSIL 727


>gi|237755533|ref|ZP_04584152.1| putative type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692296|gb|EEP61285.1| putative type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 707

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 132/388 (34%), Gaps = 52/388 (13%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            +  + LA    +       K     FY + +    +  +  +       I +  + AK 
Sbjct: 264 EILIQMLALKIFDEKANKIDKNRTLKFYISQDERNYSSLADPSIQQFIRRIENLYNEAKG 323

Query: 114 IFEDFDFSSTIARLEKAGLLY--KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG-SEV 170
            +      S I   + + +     I +NF           D     IY+ +  RF     
Sbjct: 324 SYRTILGQSIINFKDSSHISAIVSIVENFQDYSFVNSYKTD-----IYQLVFYRFANEFA 378

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            E    F+TP  ++     ++          +P    T+ DP  G   FL+ +       
Sbjct: 379 KERKGQFITPIWLIDFLVKIV----------NPRGNETVIDPCVGIADFLSLSF-----V 423

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--------------------LESDPRR 270
            S+ K+      +G + + +   +    ML+                      ++    +
Sbjct: 424 NSNPKLKDDN-LYGIDNDRQMIMLAQLNMLLNGDGNAKLYYIPDKGSIDHKIDIDGKVVK 482

Query: 271 DLSKNIQQGST-LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + G+     D    K+F   L+NPPFG+   +   A   E K          L 
Sbjct: 483 LNPNYHKNGNWDNWPDTTELKKFDVVLTNPPFGED--RAYKAFTTEDKEIAECYELWHLN 540

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K  +   L L+ L N + L     GR  I+LS+S     R      + RRW +EN  I A
Sbjct: 541 KQGNWIDLGLIFLENAVRLLKE-NGRMGIILSNSIASIDR----WKKARRWFIENMRIVA 595

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEE 417
           +  LP ++F  T + T + +    K EE
Sbjct: 596 LFDLPPNIFADTGVNTTIIVAYKPKKEE 623


>gi|312872393|ref|ZP_07732463.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092216|gb|EFQ50590.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
          Length = 329

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 102/266 (38%), Gaps = 38/266 (14%)

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPP+  KWE  +D            RF P     S+ +  F+     +++        
Sbjct: 5   ISNPPYNIKWEPYEDK-----------RFIPESAPKSNANYAFIQTALAEIDHQ------ 47

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  +L  S L    +   E EIR+WLL+   I+ ++ LP  +F  T I+  L +L+ +K 
Sbjct: 48  AVFLLPRSVL--SSSNKKEKEIRKWLLKEGYIQGVIELPERMFESTPISVCLLVLNKKK- 104

Query: 416 EERRGKVQLINATDLWTSI---------------RNEGKKRRIINDDQRRQILDIYVSRE 460
             +   V +I+A ++                   R   KK  +++D     ++    +  
Sbjct: 105 --KTTDVMMIDAREMADKEERYQKGQYGSRAHTNRTYEKKVNVLSDKTIETLVQCINTGT 162

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR-KLSPLHQSFWLDIL 519
             K SR++          +++    +++          E  +    +++ L  +  L + 
Sbjct: 163 CIKISRLVHLELIEKEDWQLVPSRYIAYENKNNSCRSFEDIVRDINRIAKLRNAVKLVVN 222

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEA 545
           + + +++     +E   K     N+ 
Sbjct: 223 ETLAKKLKLDITSEDLKKSKELVNDL 248


>gi|89256323|ref|YP_513685.1| hypothetical protein FTL_0976 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314771|ref|YP_763494.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|167010846|ref|ZP_02275777.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367657|ref|ZP_04983678.1| hypothetical protein FTHG_00927 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144154|emb|CAJ79415.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129670|gb|ABI82857.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253468|gb|EBA52562.1| hypothetical protein FTHG_00927 [Francisella tularensis subsp.
           holarctica 257]
          Length = 775

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 108/414 (26%), Gaps = 99/414 (23%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICK 138
           F    E        T+  N+  S+I    +  K  FE    F        +      I K
Sbjct: 175 FKRLRENFREIHKGTSQEND--SFIQYRFEQVKREFEKDHIFEPNETIRIRESSFEDIVK 232

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                 L        V    +E  + R           F TPR VV     +L    +  
Sbjct: 233 ELEKYNLT--KTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIKQN-- 285

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------------- 237
                     + DP  G+GGFL  A   V D      I                      
Sbjct: 286 --------ELICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENIDDEK 337

Query: 238 -----------------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                                        G +  P    V    M++           + 
Sbjct: 338 LKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------DGHNG 391

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---------------- 318
                  L+ +     RF   L+NPPFG    KD   V +E K                 
Sbjct: 392 IHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDV 451

Query: 319 ---------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                       G+    L K  + S    +    +       GGR  IVL    L    
Sbjct: 452 YEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLKAGGRMGIVLPEGVL---- 507

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGK 421
             S   + R +      I  IV+LP DLF  +   + T L  L     EE++  
Sbjct: 508 NSSNLQKAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQKQD 561


>gi|111219762|ref|YP_710556.1| putative type I restriction system adenine methylase [Frankia alni
           ACN14a]
 gi|111147294|emb|CAJ58942.1| putative type I restriction system adenine methylase [Frankia alni
           ACN14a]
          Length = 712

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 44/272 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++E L  R+    S    +  TP  V  L   L      A          T+ D  CG G
Sbjct: 165 LFEVLRVRYREVYSRQVAE--TPPAVADLMVGLAGLGRMAGEL-------TVLDSACGVG 215

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L  A           ++  +    GQ+++P    +  AG+L+   ++           
Sbjct: 216 GLLEAA-----------RVAGVRRLLGQDVDPTAARITGAGLLLHGADARIVA------- 257

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              +L  D F G +    L  PP G++     + V+          +G G+P   +  + 
Sbjct: 258 -ADSLLADAFVGGQADVVLCGPPSGQRAWPHDELVDSPW-------WGYGVPPRGEPELA 309

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H            G   +VL  +   +  AG     IR  LL    + A++ LP DL
Sbjct: 310 WVQHCLAH-----GRRGAPVLVLMPAAAASRPAG---RRIRANLLRAGALRAVLGLPLDL 361

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           F     A  LW+L     +    +V +  A++
Sbjct: 362 F-GAGSAPDLWVLRVPGDDVPPAQVLMGLASN 392


>gi|156502396|ref|YP_001428461.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290952883|ref|ZP_06557504.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313928|ref|ZP_06804493.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156252999|gb|ABU61505.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 775

 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 108/414 (26%), Gaps = 99/414 (23%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICK 138
           F    E        T+  N+  S+I    +  K  FE    F        +      I K
Sbjct: 175 FKRLRENFREIHKGTSQEND--SFIQYRFEQVKREFEKDHIFEPNETIRIRESSFEDIVK 232

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                 L        V    +E  + R           F TPR VV     +L    +  
Sbjct: 233 ELEKYNLT--KTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIKQN-- 285

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------------- 237
                     + DP  G+GGFL  A   V D      I                      
Sbjct: 286 --------ELICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENIDDEK 337

Query: 238 -----------------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                                        G +  P    V    M++           + 
Sbjct: 338 LKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------DGHNG 391

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---------------- 318
                  L+ +     RF   L+NPPFG    KD   V +E K                 
Sbjct: 392 IHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDV 451

Query: 319 ---------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                       G+    L K  + S    +    +       GGR  IVL    L    
Sbjct: 452 YEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLKAGGRMGIVLPEGVL---- 507

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGK 421
             S   + R +      I  IV+LP DLF  +   + T L  L     EE++  
Sbjct: 508 NSSNLQKAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQKQD 561


>gi|294084222|ref|YP_003550980.1| N-6 DNA methylase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663795|gb|ADE38896.1| N-6 DNA methylase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 790

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 148/453 (32%), Gaps = 79/453 (17%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +    + +  ++   + +          +   YE  + ++ ++ SE     +TPR +
Sbjct: 250 NHFKYRRAIVRTVQHLREMNVRSAINSGADALGQFYETFL-KYANDASE-MGIVLTPRHI 307

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP- 242
              A  ++            G    +YDPTCGTGGFL  A++ V +              
Sbjct: 308 TKFAAEVV----------GVGAHDVIYDPTCGTGGFLVAALDKVRETCQQTDGEKFDAFR 357

Query: 243 ----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-----------DLF 287
               +G E      ++ +  M+ R   S    + +    Q + LSK              
Sbjct: 358 NDNLYGIEQSDRVFSIALVNMIFRGDGSSKIHNGNCFDNQFNMLSKTVKRQSASECEPNK 417

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F     NPPF                             +S+    F+ H      
Sbjct: 418 ASGPFTRIFMNPPFA----------------------------VSEPECDFVDHAI---- 445

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATY 406
           L      +   +L + P+     G    + R+ LL    ++A++ +  DLF+   N  TY
Sbjct: 446 LQAAPSAKLFAILPNGPI----TGDDHKKWRKNLLLQHTVKAVIRMQDDLFYPVANKGTY 501

Query: 407 LWILSNRKTEERRGKVQL-INATDLWTSIRNEGKKR---RIINDDQRRQILDIYVSRENG 462
             IL   +       V   I    L+       K +   +    D   +I D        
Sbjct: 502 AIILETWRPHRIDDLVYFGI----LFDGQSASQKSKLIAKATAQDNMNEITDDLR----- 552

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           KF ++ D +     R K+L PL++  + D    A L +            +  L +L+ +
Sbjct: 553 KFMQIGDTKIGAKPREKILSPLKLDGLYDFASEAYLSSSEKISIAPEKSIAGVLKMLESV 612

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
             +  P+  A   ++E   S   +  + +   +
Sbjct: 613 EAKNAPFIIAAKEIREFQISELIQPRRGQCPPA 645


>gi|255021987|ref|ZP_05293995.1| Type I restriction-modification system, M subunit, putative
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968623|gb|EET26177.1| Type I restriction-modification system, M subunit, putative
           [Acidithiobacillus caldus ATCC 51756]
          Length = 799

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 109/399 (27%), Gaps = 121/399 (30%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLI 163
               +  KA ++  D  +   +L+ +   ++   K     +L      D +    +E  +
Sbjct: 220 DGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQLERFDLS--KTGDDIKGLAFEKFL 277

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               +        F TPR VV     LL          +P     + DP  G+GGFL  A
Sbjct: 278 G---TTFRGELGQFFTPRPVVEFMVDLL----------NPREGERICDPASGSGGFLIRA 324

Query: 224 MNHVADCG------------------------------------------SHHKIPPILV 241
             HV                                              S     PI  
Sbjct: 325 FEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEEAFSRLNRELLPSDDNNKPIDT 384

Query: 242 PHGQ---------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-TLSKDLFTGKR 291
             G+         + EP         M++         D    I      L  +   G R
Sbjct: 385 RVGRLAWQCIYGTDAEPRAARTAKMNMIMHG-------DGHGGIHYHDGLLDINGIFGGR 437

Query: 292 FHYCLSNPPFGKKWEKDK-----DAVEKEHKNGELGR-----FGPGL------------- 328
           F   L+NPPFG    +D+     D          L R     +GP               
Sbjct: 438 FDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCREGGYGPAWEESHQSLLAAAAA 497

Query: 329 -------------PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         K     ++F+    N L+     GGR  IVL    L         +
Sbjct: 498 RKPILDLFEIGKGKKNRPTELIFVERCLNLLK----PGGRMGIVLPDGNL----NNPSLA 549

Query: 376 EIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
            +RRW      + A+V+LP   F      +   L  L  
Sbjct: 550 WLRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRK 588


>gi|194466428|ref|ZP_03072415.1| N-6 DNA methylase [Lactobacillus reuteri 100-23]
 gi|194453464|gb|EDX42361.1| N-6 DNA methylase [Lactobacillus reuteri 100-23]
          Length = 328

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 102/273 (37%), Gaps = 37/273 (13%)

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPP+  KW+    A  +E       RF  G+P  S+ +  F++   +K         +
Sbjct: 5   ISNPPYNMKWQHPFFAQSQE-------RFMLGVPPQSNANYAFILTALSK-------QDK 50

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  +L +  L        E  I++ L+E + +EA++ LP  +F  T+I T L I +  K 
Sbjct: 51  AVFLLPNGVLTT--NNKEEQAIKKSLIEKNYLEAVITLPEKMFESTSIPTSLLIFNKEK- 107

Query: 416 EERRGKVQLINATDLWTSIRNEGK---------------KRRIINDDQRRQILDIYVSR- 459
             +   + +INA  L      E +               K  ++ ++  ++I + ++ + 
Sbjct: 108 --KTSNILMINADSLAKEEIREQRGQVGSKSHTSRVYKKKINVLPNEAIKKI-ESFLDKP 164

Query: 460 -ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            +    S+++   T   +   +     +    +    + LE            +      
Sbjct: 165 GDEQGVSKVVPIETIKEQDYVLTPNRYIEMKQEDIQHSSLEKLSEELNRVSAEKGAVKLT 224

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
           +   M            ++ES K+++      K
Sbjct: 225 INRKMANDLGLLPLIKLLQESAKTSKELNDAFK 257


>gi|327184404|gb|AEA32849.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 609

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 108/276 (39%), Gaps = 39/276 (14%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + DP+ G  G   + + +  +               QEL             I  
Sbjct: 132 RKDDKVLDPSSGINGAWLELLKNNPNQNMTV----------QELNEIDAEFAYLNTKILG 181

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                    +  + QG TLS   +T       F   ++ PP   +  KD           
Sbjct: 182 -------ATNCIVYQGDTLSDPKYTQDGNLQLFDKIVTFPPINARISKDA------IIEN 228

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              RF  G    + G   F+ +  + L    N  G+A IV+S  PLF G   +     R+
Sbjct: 229 RFNRFRYGDITYTKGESAFISNAISSL----NQTGKAVIVVSDGPLFQGGKVAS---FRK 281

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT-DLWTSIRNEG 438
           +L+++DLIE ++ALP+ L    +I     ++ N+   + +G++Q INA  + W      G
Sbjct: 282 FLVDHDLIETVIALPSSL-LSYSIIPINILIINKNKTDSKGQIQFINANQNEWYQTDKHG 340

Query: 439 KKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
           K  RI++    ++I+++Y SR +    S +     +
Sbjct: 341 K--RILSTLGIQKIVELYHSRASVEGKSAIFANTDY 374


>gi|329937004|ref|ZP_08286633.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces griseoaurantiacus M045]
 gi|329303611|gb|EGG47496.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces griseoaurantiacus M045]
          Length = 724

 Score = 97.9 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 99/284 (34%), Gaps = 49/284 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D      +  + E  +   G+     +  + TP  +  L   LL           PG   
Sbjct: 158 DEGGQAALGVLAERQLEDSGA-----SGAYRTPAPLADLLARLL-----------PGAPT 201

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DP CG+G  L           +          +GQ++ P         + +   E D
Sbjct: 202 RVLDPACGSGSLL-----------AAAARRGARELYGQDVLPVQARRSAVSLALTASEDD 250

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGP 326
            +  +    +   +L  D F        L NPP+G + W  D+ A +         R+  
Sbjct: 251 TKVTV----RAADSLRADAFPELLADAVLCNPPYGVRDWGHDELAYD--------SRWAY 298

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P  ++  + ++ H    L      GG AA++L  +             +R  L+ +  
Sbjct: 299 GVPARAESELAWVQHALAHL----TPGGHAALLLPPATASRASG----RRVRAELVRSGA 350

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATD 429
           + A++ALP       ++   +W+L   +     R  V  ++  +
Sbjct: 351 LRAVLALPVGAAVPLHVPLQIWLLRRPEPGGPDRTSVLFVDTAE 394


>gi|126657630|ref|ZP_01728785.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
 gi|126621086|gb|EAZ91800.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
          Length = 1307

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 82/559 (14%), Positives = 168/559 (30%), Gaps = 40/559 (7%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L+  L+       +++L    + ID E+  +           +         TR+ ++ Y
Sbjct: 308 LQDRLQKLYQEGMKRFLGEDVTYIDNEAIDQA----------FRFFKNDPDATRDTIKKY 357

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                      F   D  +     +   +L K+ +    I L  +   ++ + +++E  +
Sbjct: 358 FRQLKFFTNNDFAFIDVHNEKLFYQNGVVLLKLVQMLQDIRLKTEE-ENQFLGDMFEGFL 416

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +    + +    F TP  +V      L         +   +   + D  CG G FL + 
Sbjct: 417 DQ---GIKQSEGQFFTPIPIVKFILKSLPLEKIFAESKEIPL---VIDYACGAGHFLNEY 470

Query: 224 MNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +     +H    +   +    G E E     V      +   +              
Sbjct: 471 AQEIKLIVENHSKNDLEKYYQNIVGIEKEYRLSKVAKVSAFMYGQDEINIIYADSLATIP 530

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +    D      +   ++NPPF  K   +    +   K   +          ++      
Sbjct: 531 NIKEND------YSILVANPPFSVKGFLETLEEKDRKKYQLIETIETKSYPNNNS---IE 581

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES------EIRRWLLENDLIEAIVAL 393
                + +      G   I++ S  L  G+A S           R+ LL+   I AI   
Sbjct: 582 TFFIERAKQLLKPDGVMGIIVPSPILTKGKAKSTSKSTNIYVATRKILLKYFDIIAITEF 641

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            +  F +T   T    L  RK E        +N  + W   + E  K +I  D+   +  
Sbjct: 642 GSGTFGKTGTNTVTLFL-RRKPENPAPCDHFLNRVNTW--FKGEDNKDQIFQDEYLIKNY 698

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             ++      +   L  +         +           T + +L+    ++ LS   + 
Sbjct: 699 CHHLEFNFEDYKTFLTGKINENFFNHDILKDYQKEFYKWTEIKKLKKSRAFKALSKEAKQ 758

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
             LD       Q         FV  S+ + +   +K  +  + +  F+  +     +   
Sbjct: 759 EELDKRFMTYVQDIERDKLYYFVLASLNTQQVLIIKSPSKNTEMKEFL-GYEWSGRKGSE 817

Query: 574 VTDVNGEWIPDTNLTEYEN 592
                G +  D    E E+
Sbjct: 818 GIKYLGNFKLDKIEGENED 836


>gi|256545587|ref|ZP_05472947.1| type I restriction-modification system, M subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398798|gb|EEU12415.1| type I restriction-modification system, M subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 674

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 124/403 (30%), Gaps = 83/403 (20%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--IFEDFDFSSTIAR 126
            +         FY TSE   +  G    +N +E          K   IFE  D  S    
Sbjct: 207 EDERDIPKPLEFYATSEERSNGDGQLTIKNRIEKIFERVKKEKKNAKIFEPND--SIKLH 264

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 +    + +S +    D     +    YE ++    + +     +F TPR+V+ +
Sbjct: 265 PRTLSYIVSELQKYSLLNTRID-----IKGKAYEEIVG---AYLRGDRGEFFTPRNVMQM 316

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIP 237
              ++          +P +   + D +CGTGGF+  AM H           D G   +  
Sbjct: 317 VVEMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLRSEFTKDIGKDKENW 366

Query: 238 PILV---------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                                G ++ P+        M++          L  N       
Sbjct: 367 NDYEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMN--NDGSGNILQTNSLLPPHE 424

Query: 283 SKDLFTGKR-------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             D F  +                    F   ++NPPFG K      A+  +    EL R
Sbjct: 425 WTDDFKTRLASALQIDKKSIINHYDIGFFDVIVTNPPFGSKIPIKDHAILSQF---ELAR 481

Query: 324 FGPGLPKISDGSMLF--------LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                 K    +M           +    +       GGR  IVL  + L +   G    
Sbjct: 482 IWNQDKKTGKWTMTDRYQSSVSPEILFIERCYQFLKPGGRMGIVLPDALLGSPGTG---- 537

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
            IR WL++N  I A + L  D F       T + IL  +  EE
Sbjct: 538 YIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEE 580


>gi|160935440|ref|ZP_02082822.1| hypothetical protein CLOBOL_00335 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441798|gb|EDP19498.1| hypothetical protein CLOBOL_00335 [Clostridium bolteae ATCC
           BAA-613]
          Length = 389

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 135/387 (34%), Gaps = 77/387 (19%)

Query: 140 FSGIELHPDTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           F  I L  D++     +M  +Y   + ++     +     +TP  V  + + +L   +++
Sbjct: 43  FENIFLSIDSMSGHLDIMGEMYSEFL-KYAFGDGKELGIVLTPPYVTKMMSQILDIDENS 101

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQ 245
                      + D   G+ GFL  AM  + +C                         G 
Sbjct: 102 ----------KVMDLATGSAGFLISAMKLMIECVEQKYGKNTTKANKKIDEIKQQRLLGV 151

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--HYCLSNPPFGK 303
           EL  E + +    M++R        D S NI++GS+  +     + F  +  L NPPF  
Sbjct: 152 ELNAEMYTLASTNMILRG-------DGSSNIRKGSSFDEPPELYRNFNANALLLNPPFTF 204

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K                               + FL      +++    GG+AAI++  S
Sbjct: 205 KENG----------------------------LPFLKFGLENMKI----GGKAAIIIQDS 232

Query: 364 PLFNGRAGSGESEI-RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS-NRKTEERRG 420
                 AGSG   I  + +L  + + A + +P DLF     + T ++IL    K  + + 
Sbjct: 233 ------AGSGRGIISCKEILSKNQLVASIKMPVDLFLPMAGVQTSIYILEHTGKEHDYKK 286

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR-MLDYRTFGYRRIK 479
           +V+ I+  +        G         + R I+++Y +      S  + D +      + 
Sbjct: 287 QVKFIDFRNDGYKRTKRGIYELDSPSQRYRDIVEVYKNGITANVSSELWDIKNQVVMDV- 345

Query: 480 VLRPLRMSFILDKTGLARLEADITWRK 506
           + R            +  +  +  ++K
Sbjct: 346 ISRNGDDWNFEQHQKIDLVPTEEDFKK 372


>gi|72536282|gb|AAZ73197.1| hypothetical protein [Escherichia coli]
          Length = 246

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 45/220 (20%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 31  MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 84

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 85  PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 136

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 137 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 195

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                 + Q  + +    +   F+  L+NPPF    +++ 
Sbjct: 196 IHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEED 235


>gi|291276677|ref|YP_003516449.1| putative type I restriction-modification system M protein
           [Helicobacter mustelae 12198]
 gi|290963871|emb|CBG39707.1| putative type I restriction-modification system M protein
           [Helicobacter mustelae 12198]
          Length = 561

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 117/315 (37%), Gaps = 50/315 (15%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  + E        + S     + TP  V  L   LL   +D            +Y+P 
Sbjct: 86  DLEIVEEFFFIITQQKTSNKLYYYSTPLQVNRLLIGLLQIEED----------DKIYNPC 135

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G      +          ++   +  +G+EL+P    +     LI ++   P   L 
Sbjct: 136 YGMGSIFLSLV----------QMQKNIELYGEELDPRLSQIA---FLILQICEIPTHGLY 182

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKIS 332
            N    S    D    + F   L NPP       D    ++        RF P G     
Sbjct: 183 VNDLLKSPRFVDGDQFQIFDKVLCNPPLYAHLGIDFLKKDQ--------RFHPIGAIAKH 234

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              ++FL+H  + L+           ++ +  L   +  + E+++R  L +  +I +I+ 
Sbjct: 235 YPELIFLIHSLSHLKKC------GVFIVRNQVL---QKNASEAKVRSRLCKQRMIRSIIE 285

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F   N    + ++          ++  INA+D +   R EGK  R+        I
Sbjct: 286 LPKNIFPHQNNDFSIVVI-----MPNSEEILHINASDEFFYER-EGKYNRL---KNIEVI 336

Query: 453 LDIYVSRENGKFSRM 467
           L+I+  ++ GK+S++
Sbjct: 337 LEIFFQQKEGKYSKI 351


>gi|329121926|ref|ZP_08250539.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965]
 gi|327467372|gb|EGF12871.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965]
          Length = 674

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 121/401 (30%), Gaps = 79/401 (19%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +         FY TSE   +  G    +N +E          K   + F+ +  I    
Sbjct: 207 EDERNIPKPLEFYATSEERSNRDGQLTVKNRIEKIFERVKKEKKNA-KIFEANDGINL-- 263

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               L  I        L    +   +    YE ++    + +     +F TPR+V+ +  
Sbjct: 264 HPRTLSYIVSELQKYSLLNTRI--DIKGKAYEEIVG---ANLRGDRGEFFTPRNVMQMVV 318

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPI 239
            ++          +P +   + D +CGTGGF+  AM H           D G        
Sbjct: 319 EMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLKSEFTKDIGKDKGNWND 368

Query: 240 LV---------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              G ++ P+        M++          L  N         
Sbjct: 369 YEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMN--NDGSGNILQINSLLPPHEWT 426

Query: 285 DLFTGKR-------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           D F  +                    F   ++NPPFG K      A+  +    EL R  
Sbjct: 427 DDFKTRLSSALQIDKKSIMNQYDIGFFDVIVTNPPFGSKIPIKDHAILSQF---ELARIW 483

Query: 326 PGLPKISDGSMLF--------LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
               K    +M           +    +       GGR  IVL  + L +   G     I
Sbjct: 484 NHNKKTGKWTMTDRYQSSVSPEILFIERCYQFLKPGGRMGIVLPDALLGSPGTG----YI 539

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           R WL++N  I A + L  D F       T + IL  +  EE
Sbjct: 540 REWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEE 580


>gi|290959827|ref|YP_003491009.1| N-methyltransferase [Streptomyces scabiei 87.22]
 gi|260649353|emb|CBG72468.1| putative N-methyltransferase [Streptomyces scabiei 87.22]
          Length = 677

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 96/278 (34%), Gaps = 48/278 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+ R         +  +TP  +  L   L             G  R++ DP CGTG 
Sbjct: 170 FEFLLARHLDANPR--QYTLTPAGLAELMAELA------------GPARSVLDPACGTGA 215

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                 P    +GQ+   E  A+           +    + +     
Sbjct: 216 LLHAVA-----------ARPGQELYGQDSSRELAALTA------LRLALGSGNAAVRTAA 258

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           G +L  D     R    L +PPF ++ W  D+ A +         R+  G P  ++  + 
Sbjct: 259 GDSLRADAHEPLRAEAVLCHPPFNERNWGHDELAYD--------PRWEYGFPARTESELA 310

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H   +L+     GG A +++  +             IR  LL    + A++ALP   
Sbjct: 311 WVQHALARLQ----DGGTAVLLMPPAVASRRSG----RRIRADLLRRGALRAVIALPVGA 362

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
               NI  +LW+L          ++ L++   L    R
Sbjct: 363 APPYNIPLHLWVLRRPGRASVPPELLLVDTGRLVHEGR 400


>gi|78776736|ref|YP_393051.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497276|gb|ABB43816.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 669

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 130/398 (32%), Gaps = 74/398 (18%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF--SG 142
           E+  +       +N + S     S + +    +         ++    + K    F    
Sbjct: 263 EFLTARNIPIEKQNLMLSSFYEISKDVQRDELEILDKEVSKLIDGKASINKQIFTFIYHN 322

Query: 143 IELHPDTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           I L  D +     +M  +Y   + ++     +     +TP  +  + T +L    ++   
Sbjct: 323 IFLSIDAMAGHLDIMGEMYSEFL-KYALGDGKEIGIVLTPPYITKMMTTILGVNQNS--- 378

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELE 248
                   + D   G+ GFL  +M  + D    +                     G EL 
Sbjct: 379 -------KVMDLATGSAGFLISSMEMMIDDAEANYGKETTAAKKKIDIIKKEQLLGVELN 431

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWE 306
            E   +    M++R        D S NI +G+T +    L+T  + +  L NPPF     
Sbjct: 432 AEMFTLAATNMILRG-------DGSSNIHKGNTFNTPEQLYTSFKANKLLLNPPFSYDEN 484

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                                        M F+    +K+      GG  AI++  S   
Sbjct: 485 G----------------------------MPFIAFGLDKM----EKGGLGAIIIQDSAGS 512

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI 425
                S      + +L+   ++A + +PTDLF     + T +++L   K  +    V+ I
Sbjct: 513 GKATKSN-----QAMLKKHTLKASIKMPTDLFQPMAGVQTSIYVLEAHKPHDFEQTVKFI 567

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +  +      +   +       +   I+ IY + +N K
Sbjct: 568 DFRNDGYKRTSRALQEIDEPTKRYADIVKIYKAGKNAK 605


>gi|1209820|gb|AAC44403.1| XmnI methyltransferase [Xanthomonas axonopodis pv. manihotis]
          Length = 620

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 111/325 (34%), Gaps = 56/325 (17%)

Query: 120 FSSTIARLEKAGLLYKICK----NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +S+++ R     L  +  +     FSGI      +   + S      +     EV +G  
Sbjct: 67  WSTSLWRDRDFHLSDQCLEQLNALFSGINFT--QIDYDIRSAALREFL---TPEVRKGLG 121

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F+TP +VV    + +  P  A             DP CG+G FL + +       +   
Sbjct: 122 IFLTPDEVVREVVSFVDPPSSA----------KCLDPACGSGTFLIEVIKKWRKENAQK- 170

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---- 291
               +   G +  P    +    +            L+ N     +L +      +    
Sbjct: 171 ----ISVWGADKNPRMLLIGELNL-------GHFPGLTFNRALMDSLVEPGKRHSKPWCR 219

Query: 292 ---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLANKL 346
              F + L+NPPFG   E    A      +G    F       +      LF+      L
Sbjct: 220 YGYFDFILTNPPFGVTVEASGAAY-----SGYDIAFTANGEPRARQSSEWLFVEQSLRWL 274

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     GG  A+VL  S L N  +       R  L +   ++A++ LP + F  T   T 
Sbjct: 275 KP----GGTLAVVLPRSVLTNPSSAYE----RSLLAKLGYLKAVIQLPPETFLVTGAQTN 326

Query: 407 LWILSNRK---TEERRGKVQLINAT 428
             +    K    ++R  KV ++ AT
Sbjct: 327 TVVAFIEKYASDKDREKKVGVVQAT 351


>gi|86130652|ref|ZP_01049252.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819327|gb|EAQ40486.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 833

 Score = 96.4 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 153/423 (36%), Gaps = 81/423 (19%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           ++E++  FG S    ++F+ +   S++     + + L  TN   N        +     +
Sbjct: 17  IQEEFKTFGISIESFDAFLYLLALSYF---NKTNTHLEKTNLLPNSNGLFGGLAKGLLKL 73

Query: 115 FEDFD-----------FSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHL 162
            ED D           F+  I R   A L        S   L  D  +        +E L
Sbjct: 74  TEDKDDKYIIEETNSVFNDIIKRWPAAFLENLKLNFLSSYALKTDYNIGKENFPLFFEIL 133

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++R+       A   + P ++      +     + +          +Y+P  G   F   
Sbjct: 134 LKRYLETQGRNAGLTILPEEISKFICDITATSSEQV----------IYNPFAGLASFGMY 183

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +                 V  G+EL+    A+    + +R      +  + K +  G + 
Sbjct: 184 S-------------NENSVYVGEELDERIAALANCRLWLR------KNKMHKAVYSGDSF 224

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
              L   K+    +++PPFG +    +D +                             +
Sbjct: 225 DSKLEFNKKVDLFVASPPFGLRISNFEDKL-----------------------------I 255

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           A+ L+   +G G+  +++ ++ L + R      E+R+ L+++DL++ +++ P  L   + 
Sbjct: 256 AHSLK-STSGKGKILLLIPNTFLISER--KDHKELRKKLIDDDLVDMVISFPGGLLPNSG 312

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           IA  + IL+  K   +   V  + A      +++  +++ +++ D +  IL+   S    
Sbjct: 313 IAFSILILNKSKKVPK--DVTFVKADAF---VKSNRRQKILVSSDLKAAILEDVNSESIK 367

Query: 463 KFS 465
           + S
Sbjct: 368 RVS 370


>gi|260892718|ref|YP_003238815.1| N-6 DNA methylase [Ammonifex degensii KC4]
 gi|260864859|gb|ACX51965.1| N-6 DNA methylase [Ammonifex degensii KC4]
          Length = 768

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 111/341 (32%), Gaps = 47/341 (13%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA--- 223
              +      F TPR V+   TAL+    + L          + DP CGTGGFL +A   
Sbjct: 232 AEALRLADGQFFTPRQVIEAGTALVGIRWEDL----------VIDPACGTGGFLIEAFLQ 281

Query: 224 -MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI------RRLESDPRRDLSKNI 276
            + H +              +G + +     +  A M I           D  R    + 
Sbjct: 282 VLRHFSGDQREAARWAQQHVYGVDRDAVGVKLAKAVMQIVGDGSAHIFRGDSIRRHQWDE 341

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              S  +       RF   L+NPPFG+     +         G+L R G  + +  DGS 
Sbjct: 342 HYPSLKAN--LQEGRFDVVLTNPPFGRPLRVAR---------GDLRRAGYTIHRRPDGSE 390

Query: 337 LFL----MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                  +   +        GGR  IVL  +  F+         +  WL E     A+V 
Sbjct: 391 AESVEIGLVFLDLAHWLLKPGGRVGIVLPETYFFSTS----YHWLFDWLRERFRPLAVVN 446

Query: 393 LPTDLF-FRTNIATYLWILSNRKTEERR--GKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +P + F       T  ++    +  E    G+V  +N          +  +   + D   
Sbjct: 447 VPMEAFQQYARAKTNFYVFKKLEAGEDPEGGEVVFLNPRTCGIDPAGKVTESNELKDH-- 504

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
              +D ++  E       +  +    RR+ V       ++ 
Sbjct: 505 ---VDAFLRGELPDGGSRVSLKEVYARRVLVPTYYDTRYVR 542


>gi|218691195|ref|YP_002399407.1| putative Restriction enzyme subunit alpha [Escherichia coli ED1a]
 gi|218428759|emb|CAR09699.2| putative Restriction enzyme alpha subunit [Escherichia coli ED1a]
          Length = 629

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 107/318 (33%), Gaps = 60/318 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y   + ++ +   +     +TPR +  L + L           +      + D 
Sbjct: 302 DVVGQFYGEFL-KYTAGDKKALGIVLTPRHIAELFSLLA----------NVTPESRVLDI 350

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPR 269
             GTGGFL  AM  +       +    +  +   G E  P+  A+  + M++R       
Sbjct: 351 CAGTGGFLISAMQQMLKKAVTEEQRQDIRKNRLIGIENSPKMFALAASNMILRG------ 404

Query: 270 RDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            D   N+ Q S   +         + +  + NPP+ +                       
Sbjct: 405 -DGKANLHQASCFDEVINCAVKKMKPNVGMLNPPYAQ----------------------- 440

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                SD  +  L  +   L     G    AIV  S  +           +R  LL +  
Sbjct: 441 ---AKSDAELHELYFVKQMLNCLEPGSYGIAIVPMSCAISPNP-------VREELLRHHT 490

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTSIRNEGKKRRII 444
           ++A++++P +LF+   + T + +       +    K        D +   +++G+     
Sbjct: 491 LDAVMSMPAELFYPVGVVTCIMVWIAGIPHDVSDRKTWFGYWRDDGFVKTKHKGRTDLYN 550

Query: 445 N-DDQRRQILDIYVSREN 461
                R + +++Y +RE 
Sbjct: 551 RWPSIRDRWVEMYRNREI 568


>gi|307273977|ref|ZP_07555187.1| hypothetical protein HMPREF9514_02719 [Enterococcus faecalis
           TX0855]
 gi|306509285|gb|EFM78345.1| hypothetical protein HMPREF9514_02719 [Enterococcus faecalis
           TX0855]
          Length = 199

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 25/196 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  --------LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYI 104
                   L+   S  DL  + V + GY+      +++    +       N  N     +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLI 163
           AS  +    +F+D D  S     ++      I +    + ++        V+ + YE LI
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVLGHDGDVIGDAYEFLI 182

Query: 164 RRFGSEVSEGAEDFMT 179
            +F SE  + A +F  
Sbjct: 183 SQFASEAGKKAGEFYI 198


>gi|237751391|ref|ZP_04581871.1| site-specific DNA-methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229372757|gb|EEO23148.1| site-specific DNA-methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 641

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 123/411 (29%), Gaps = 48/411 (11%)

Query: 53  SAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           S +          N DLE               E     L   N R  ++        + 
Sbjct: 206 SGILLALEEIKYKNFDLERLNTDKQKSDGIKIYEAIADNLKRANVRPEVKKDKLLSQFSI 265

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                  + +++           +         +      + ++   Y   + ++G    
Sbjct: 266 IKDTPKINETNSTLGKTPLKHYTEFLYKRIYQNIKYTQTSEDILGLFYSEFM-KYGGGDG 324

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230
           +     +TP+ +  L   L+                 ++DP CGT GFL  AM+++    
Sbjct: 325 QTLGIILTPKHICELFCDLV----------ELKPNDVVFDPCCGTAGFLIAAMHNMLSQV 374

Query: 231 --GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              +  +        G E +P+   +    M++R        +     Q    L KD+  
Sbjct: 375 TDETQRQHIKENQLFGIEEKPDMFCIATTNMIVRGDGKSNLENKDFLKQNPFELQKDIAA 434

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                  + NPP+ +  + + +  E                               +L  
Sbjct: 435 S----IGMMNPPYSQGSKANPNLYEIAFS--------------------------EQLLD 464

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G +A +++  S +        E  I+  +L+   +E ++    + F+       + 
Sbjct: 465 SLTKGAKAIVIIPQSAV--TGKSKEEKAIKANILKKHTLEGVITCNKNTFYGVGTNPCIA 522

Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVS 458
           I +      +    + I+  D  +   +++G    I   D++  +L ++  
Sbjct: 523 IFTAWIPHHKDKICKFIHYEDDGFEVQKHKGLVETIHAKDKKAHLLKVWRD 573


>gi|331669722|ref|ZP_08370568.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
 gi|331063390|gb|EGI35303.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
          Length = 342

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 45/220 (20%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                  + K  LL K  +    + L           ++YE+L+ +  +        F T
Sbjct: 113 MKDARLEIVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKLTTAGIN--GQFRT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++     ++        + +P    T+ DP CGTGGFL  +  ++ +  S       
Sbjct: 167 PRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT 218

Query: 233 -----------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                                          + HG + +     +    +++  +E+ P 
Sbjct: 219 EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVEA-PD 277

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                 + Q  + +    +   F+  L+NPPF    +++ 
Sbjct: 278 IHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGSLDEED 317


>gi|24373032|ref|NP_717074.1| type I restriction-modification system, M subunit, putative
           [Shewanella oneidensis MR-1]
 gi|24347201|gb|AAN54519.1|AE015590_1 type I restriction-modification system, M subunit, putative
           [Shewanella oneidensis MR-1]
          Length = 684

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 125/434 (28%), Gaps = 77/434 (17%)

Query: 38  FTLLRRLECALEPT----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
            T  RR    +       + A   ++L    S +  E         + + +E        
Sbjct: 195 LTAFRRCHNFIHGNEGMPKDAAFWQFLYLIFSKMYDERIGNRDREFWASPTEQF-----D 249

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
              R  + + I    +  K  + +  FS     +     L  +    +  +         
Sbjct: 250 DEGRKKIRARINPLFEKVKKAYPEI-FSGNEEIILSDRALAFMVSELAKYDFT--RTEMD 306

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
                Y+ ++      +      + TPR  + L   ++          +P     + DP+
Sbjct: 307 AKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMM----------APQPHEKVLDPS 353

Query: 214 CGTGGFLTDAMNHVADC--------------------GSHHKIPPILVPHGQELEPETHA 253
           CGTGGFL   ++ +                           K        G + +P    
Sbjct: 354 CGTGGFLEQTLSFINRKLCEEEEVKLGAETTEEFISIQQQIKKFAENNLFGCDFDPFLCR 413

Query: 254 VCVAG--MLIRRLESDPRRDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPF 301
                  M    + +    +  +         +   +                 L+NPPF
Sbjct: 414 ASQMNVVMASNAMANIYHMNSLEYPHGHLKGVEPAKSKIPVGDSSGKDGSIDVILTNPPF 473

Query: 302 GKKWEKDKDAVEKE------HKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPPNGG 353
           G         + ++       +  E G F     +       +LF+      L+     G
Sbjct: 474 GSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLKQ----G 529

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           GR  IVL    L       G+  IR WL++   +   V LP + F      NI T L  L
Sbjct: 530 GRMGIVLPDGIL----GNPGDEYIRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFL 585

Query: 411 SNRKTEERRGKVQL 424
             +KT+  +  +  
Sbjct: 586 -KKKTDTEKDAIAF 598


>gi|124009161|ref|ZP_01693843.1| N-6 DNA methylase [Microscilla marina ATCC 23134]
 gi|123985259|gb|EAY25186.1| N-6 DNA methylase [Microscilla marina ATCC 23134]
          Length = 733

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 63/370 (17%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K   +  +     GI L    +  +     +E  +    S        + TPR++V    
Sbjct: 299 KPVKVKAVVGYLEGINLKDTDLDSK--GKAFETFMG---SYFRGDFGQYFTPRNIVQFII 353

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------------------D 229
            +L   + +           + D +CG+GGFL   +  +                    +
Sbjct: 354 NVLPITNHS----------RVLDTSCGSGGFLLYTLEKIRKQADEYFENQKGDPENDIAE 403

Query: 230 CGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST----L 282
              HH+     V     G E+  +        M+I   +       +  + +        
Sbjct: 404 GADHHRYWHDFVSKKLFGIEINEQIARTAKMNMIIHN-DGQTNVIAADGLLKDEALRQRS 462

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------DGS 335
               F    F + ++NPPFG   ++ + A   ++K G            +          
Sbjct: 463 HNREFKYNSFDFIVTNPPFGSVVKQLEKAYLHQYKLGNKDVSWLDTKNSAVQGRANQSTE 522

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +LF+      L+     GG  AIV+    L N         +R  + E   I A+V++P 
Sbjct: 523 VLFIEQCWYFLK----EGGTLAIVVPDGILTNSSL----QYVRDRIEEWYRIVAVVSMPQ 574

Query: 396 DLFFRT--NIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             F  T   + + +  L    + T E    ++     ++ T+   E    RI  + +++ 
Sbjct: 575 TAFAHTGAGVKSSVLFLKKWDKATTESLQSIKDRLKNNIKTTHHYEATIERI--EKEKKD 632

Query: 452 ILDIYVSREN 461
           I+  +   EN
Sbjct: 633 IIKAHRGFEN 642


>gi|257790143|ref|YP_003180749.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257474040|gb|ACV54360.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 764

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 142/441 (32%), Gaps = 69/441 (15%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNN 99
           L+R    +EP    V E  +       DL     VA  +F    E   L  +   +    
Sbjct: 355 LKRF---VEPAPHEVLEALVQ--DVRSDLAHVEGVAASAFDAAWEVLPLLFVRLVDDGAA 409

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHP 147
               IA+    A+   E   F++    L                   ++      + L  
Sbjct: 410 WARVIAAEDTPAQIDVELERFAAQDEGLSFLSGFALSASSLDESSQRRMIDRIGDLRLDG 469

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                         L+R      +E   D   P  V  L   + L  + +  +       
Sbjct: 470 YNG----------ELLRWLA-LGNEPEPDAPCPAAVSDLMARIALAFNPSAAQA------ 512

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
             YDP  G G  L           +  +  P +   GQ +      V     L  R E  
Sbjct: 513 --YDPCLGVGDTL----------AALRRFAPTIRCGGQTVRFPDALVAK---LAARCEGW 557

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D +  +  GS L +D   GK     +S  P  +    D         +    R+  G
Sbjct: 558 FFDDGALAV--GSALVEDELAGKLADVIVSVLPPNQGEWTDHAP------DPSDTRWAFG 609

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  +  ++ ++             GG A +  S++ L   R    E  +R  L+E+  +
Sbjct: 610 VPPRNKANLAWVQQAFAH----RAPGGIAVLAASNAVLHESR--GCEPGVRAALIESGCV 663

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            A+V+LP  LF    +   + +L ++++     +   +NA +    + N  +  R +  D
Sbjct: 664 RAVVSLPGGLFSDGRVPFSIIVLGDKRSVPF--ETLFVNALEYG--VPNVTRAGRGLPMD 719

Query: 448 QRRQILDIYVSRENGKFSRML 468
            R +++   V R     S + 
Sbjct: 720 ARDRVVST-VERWIATGSSVF 739


>gi|330903552|gb|EGH34124.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 143

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 16/151 (10%)

Query: 72  FVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDN---AKAIFEDFDFSSTIARL 127
           + +  G+   ++S +  L     TN  N L   +    +N      + E  DF+  + + 
Sbjct: 3   YKRDGGFWVPSSSRFKHLLNEAHTNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQS 62

Query: 128 EKAGLLYKI-CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +   L  +    +F  + L         ++   YE+LI  F     +   +F TPR VV 
Sbjct: 63  KIPDLKLRQLISHFGQVRLRNSDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVR 122

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           L   LL           P +   +YDP CG+
Sbjct: 123 LMVRLL----------RPELKHDIYDPCCGS 143


>gi|134103044|ref|YP_001108705.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005198|ref|ZP_06563171.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133915667|emb|CAM05780.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 594

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 88/275 (32%), Gaps = 58/275 (21%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL      +R  +  +E L  R+    S       TP  V  L   L             
Sbjct: 116 ELLTALADERGEAETFEFLCDRYREAHSRRL--VTTPDAVASLMVRLCGAEG-------- 165

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T+ DP CG G  L  A              P     GQE++    A+  A +L+R 
Sbjct: 166 ----TVLDPACGLGTLLLAA--------------PASRALGQEVDVPHAAISAARLLLRG 207

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            +++             +L +D F G      L +PPF ++     +            R
Sbjct: 208 TDAEVVA--------ADSLREDGFRGSTADAVLCDPPFNERSWGHGELTGD-------PR 252

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +  G+P   +  + ++ H           GG  AI++  +             IR  LL 
Sbjct: 253 WEFGVPPRGEPELAWVQHCLAH----ARPGGSVAILMPPAAASRRPG----KRIRGNLLR 304

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
              + AIV LP            LW+L      +R
Sbjct: 305 AGALRAIVTLPAG-------GNDLWLLRRPAPGDR 332


>gi|262191973|ref|ZP_06050139.1| type I restriction-modification system M subunit putative [Vibrio
           cholerae CT 5369-93]
 gi|262032148|gb|EEY50720.1| type I restriction-modification system M subunit putative [Vibrio
           cholerae CT 5369-93]
          Length = 684

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 123/429 (28%), Gaps = 76/429 (17%)

Query: 38  FTLLRRLECALEPT----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
            T  RR    +       + A   ++L    S +  E         + + +E        
Sbjct: 195 LTAFRRCHNFIHGNEGMPKDAAFWQFLYLIFSKMYDERIGNRDREFWASPTEQF-----D 249

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
              R  + + I    +  K  + +    +    L    L + +    +  +         
Sbjct: 250 DEGRKKIRARINPLFEKVKKAYPEIFAGNEEITLSDRALAF-MVSELAKYDFT--RTEMD 306

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
                Y+ ++      +      + TPR  + L   ++          +P     + DP+
Sbjct: 307 AKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMM----------APQPHEKVLDPS 353

Query: 214 CGTGGFLTDAMNHVADC--------------------GSHHKIPPILVPHGQELEPETHA 253
           CGTGGFL   ++ +                           K        G + +P    
Sbjct: 354 CGTGGFLEQTLSFINKQLREKEAISLAAETTEEFISIQQQIKEFAENNLFGCDFDPFLCR 413

Query: 254 VCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDL-----------FTGKRFHYCLSNPPF 301
                +++     ++     S     G     D                     L+NPPF
Sbjct: 414 ASQMNVVMASNAMANIYHMNSLEYPHGHLKGVDPAKKTIPVGDSSGKDGSVDVILTNPPF 473

Query: 302 GKKWEKDKDAVEKE------HKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPPNGG 353
           G         + ++       +  E G F     +       +LF+      L+     G
Sbjct: 474 GSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLK----QG 529

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           GR  IVL    L       G+  IR WL++   +   V LP + F      NI T L  L
Sbjct: 530 GRMGIVLPDGIL----GNPGDEYIRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFL 585

Query: 411 SNRKTEERR 419
             +   E+ 
Sbjct: 586 KKKTDTEKD 594


>gi|237751321|ref|ZP_04581801.1| type I restriction enzyme modification subunit [Helicobacter bilis
           ATCC 43879]
 gi|229372687|gb|EEO23078.1| type I restriction enzyme modification subunit [Helicobacter bilis
           ATCC 43879]
          Length = 561

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 132/393 (33%), Gaps = 54/393 (13%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + TPR+V           D             +Y+P  G G       N          
Sbjct: 113 YYSTPREV----------NDLLALLLDLQDNDEVYNPCYGIGSIFLSLGN---------- 152

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           + P +  +G+EL+     +     LI R        L  N      + K     ++F+  
Sbjct: 153 LNPNIHLYGEELDERLSNIAR---LIARFTQIKDYKLYVNDILKQPVFKAGSILRQFNKV 209

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPP       ++   ++            G+   +   ++FL H    L+       R
Sbjct: 210 ICNPPLYAHMGVEQLKGDERFSKI-------GILAKNYPELVFLTHALAHLKQ------R 256

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              ++ +  L   +    E ++R  L++  +IEA++ LP ++F        + ++S+   
Sbjct: 257 GVFIVRNQTL---QKSFLEEKLRDKLVKERMIEAVIELPKNIFPHQACDFSVLVISHNNK 313

Query: 416 EERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           E     +  INA +   +T      + R         +I +++  +   +FS++ + +  
Sbjct: 314 E-----ILHINANNPHFYTKDGKYNRLR------HIDEIANLFKQKRESEFSKITNIKDV 362

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWR--KLSPLHQSFWLDILKPMMQQIYPYGW 531
               ++    L    I     L        +R  ++    +   +      +      G+
Sbjct: 363 KTHDLRASYYLASKMIHTNELLLADMGATIFRGQRVHGGSKDSEITYYDVGIADFSVCGF 422

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           +  F  + +  ++ K  K +     I+  + + 
Sbjct: 423 STQFSHKKMSGDKQKIQKYRLKPYDILLSLRSI 455


>gi|300790744|ref|YP_003771035.1| type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
 gi|299800258|gb|ADJ50633.1| putative type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
          Length = 564

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 95/297 (31%), Gaps = 59/297 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +E + RR+    S       TP  +  L   L             G + T+ DP CG 
Sbjct: 128 EAFELVCRRYFEAHSRRLSA--TPEPIAELMARLA------------GPVSTILDPACGF 173

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G     +                    GQ+ +P T ++    + +R LE +         
Sbjct: 174 GALALASG--------------AKTVLGQDSDPMTASIAALRLRLRGLEVEVHAV----- 214

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                L +D F G+     L +PPF ++     + V          R+  GLP   +  +
Sbjct: 215 ---DALREDAFAGRTAEAVLCDPPFNERAWGHDELVGD-------ARWEYGLPPRGEPEL 264

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H           GG   I++  +             IR  LL    + A+V L   
Sbjct: 265 AWVQHCLAH----VEPGGTVVILMPGAAAGRRSG----KRIRGNLLRAGAVRAVVTL--- 313

Query: 397 LFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
               T     LW+L      ER    V L  A D  +++    ++     +   R I
Sbjct: 314 ----TPTGPDLWLLRRPAPGERAPSTVLLGEAGDDLSTVEESWREFGEHPESGVRII 366


>gi|269219200|ref|ZP_06163054.1| restriction enzyme BgcI subunit alpha [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211347|gb|EEZ77687.1| restriction enzyme BgcI subunit alpha [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 666

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 124/410 (30%), Gaps = 64/410 (15%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
               +     V    LA      +++    V+  + Y   +     +        ++S  
Sbjct: 196 SVENDRKAPLVSAILLALQNPYFNIDRLTSVSPGNNYQVWD---GRIIYDAAEQYMKSEA 252

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGL-----LYKICKNFSGIELH-----PDTVPDRV 154
                    + + F F     +L ++         K        +++     P      V
Sbjct: 253 LMPQAKIGTLLDQFSFIKQAPQLNRSHRDLGESPLKWMTRILENDVYHAVTDPSMTAFDV 312

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N Y   I  +G     G    +TP  V  L   L+                 + DPT 
Sbjct: 313 LGNFYHEFIS-YGGGDGSGLGIVLTPEHVTTLMAELI----------DVNATDYVLDPTA 361

Query: 215 GTGGFLTDAMNHVADCGSHH----KIPPILVPHGQELEPETHAVCVAGMLIRR-----LE 265
           GT  FL  AM  + D    +    +       +G EL+ +  A+    M++R        
Sbjct: 362 GTASFLIAAMQRMFDDAGDNAAMREDIRKNRLYGIELQDKLFAIGTTNMILRGDGKANFR 421

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            D   +      +G     D     G  F   L NPP+ +                    
Sbjct: 422 RDSIFEAPMAEMRGDMKLSDGTIALGHGFTKVLLNPPYSQ-------------------- 461

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G    +   + F+      L    N GG+ A+++  S +        +   +R++LE
Sbjct: 462 -AKGKNTRNLSELAFIERALEFL----NPGGKLAVIVPQSAMV--GKTKEDKARKRYILE 514

Query: 384 NDLIEAIVALPTDLFFRTN-IA-TYLWILSNRKTEERRGKVQLINATDLW 431
           +  +E ++ +    F  +     T + I +  +      KV+ +N     
Sbjct: 515 HHTLETVITMNPMTFTNSGHTPHTVIAIFTAGRKHREDQKVRFVNFEKDG 564


>gi|228476637|ref|ZP_04061317.1| type I restriction enzyme EcoR124II M protein [Streptococcus
           salivarius SK126]
 gi|228251735|gb|EEK10809.1| type I restriction enzyme EcoR124II M protein [Streptococcus
           salivarius SK126]
          Length = 100

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +   + + K        +YDP  G+G 
Sbjct: 1   YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHKQETVNK--------IYDPAAGSGS 52

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            L  A  H  +              GQE+   T+ +      
Sbjct: 53  LLLQAKKHFDNHIIEEG------FFGQEINHTTYNLARMNSF 88


>gi|191639034|ref|YP_001988200.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|190713336|emb|CAQ67342.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|327383094|gb|AEA54570.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei LC2W]
 gi|327386278|gb|AEA57752.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei BD-II]
          Length = 235

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 27/196 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M + T  + +L   +W +A+ L      +++   +L     + L   +    S   E+  
Sbjct: 1   MAQMT--SQTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 60  -----------LAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                       A+   ++  +    V+   GY       ++       +    LE    
Sbjct: 59  TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQLEDLSQ 118

Query: 106 SFSDNAK------AIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           SF D  +       +FED D  S        ++  ++  + K  S ++L      + ++ 
Sbjct: 119 SFRDIEQSSEFFSGLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQN-TNDILG 177

Query: 157 NIYEHLIRRFGSEVSE 172
           + YE+LI +F S+ ++
Sbjct: 178 DAYEYLIGQFASDPAK 193


>gi|109948199|ref|YP_665427.1| type II restriction modification enzyme methyltransferase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715420|emb|CAK00428.1| type II restriction modification enzyme methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 679

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 128/407 (31%), Gaps = 74/407 (18%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIARLEKAGLLYKICK 138
           F   SE+  +   +   R+ + +     S +  +      D  +    LEK   + K   
Sbjct: 260 FNQISEFLKTKNLNEEKRDLMLASFKEISKDPQRDKIASLD-KAISMHLEKDASITKQIF 318

Query: 139 NF------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL 
Sbjct: 319 TFLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL- 376

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPIL 240
                           + D   G+ GFL  +M             +        K     
Sbjct: 377 ---------GVNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKAMKTT 427

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G EL  E  ++    M++R   S      +          K ++   + +  L NPP
Sbjct: 428 QLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFE-----TKKKIYEDFKPNILLLNPP 482

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F             E       +FG             L H+          GG  AI++
Sbjct: 483 FS-----------HEENGMPFIKFG-------------LEHM--------QKGGLGAIII 510

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERR 419
             S   +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +  
Sbjct: 511 QDSA-GSGQALKSNVEI----LKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYE 565

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
             V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 566 KPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|288802385|ref|ZP_06407825.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica D18]
 gi|288335352|gb|EFC73787.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica D18]
          Length = 677

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 126/385 (32%), Gaps = 71/385 (18%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY T+    ++ G       + +           IFE  D             L    + 
Sbjct: 223 FYTTASERNNSDGQATVYKRIAAIFEEVKKKQGKIFEAND--RIKLEPRTLSHLVGELQK 280

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           +S ++   D          YE ++    S +     +F TPR+V+ +A A++        
Sbjct: 281 YSLLDTRID-----FKGKAYEEIVG---SNLRGDRGEFFTPRNVMQMAVAMI-------- 324

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPILV--------- 241
             +P     + D +CGTGGF+  AMN V          D G + +  P +V         
Sbjct: 325 --APQEGEKVLDSSCGTGGFVVTAMNAVIATIKSKMQKDYGENLEDWPPVVRDAFNNKIT 382

Query: 242 ------PHGQELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
                   G ++ P+        M +      +  +  S       +  K     +R   
Sbjct: 383 EIAGENFFGFDINPDLVKATKMNMVMNNDGSGNIIQLNSLLPPHEWSEEKKQLLEERMGR 442

Query: 292 -------------FHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336
                        F   ++NPPFG K    D+  +E+        +   G   ++   + 
Sbjct: 443 PKNSIVNHKTIDLFDVIVTNPPFGSKIPINDQQILEQFDLAHSWVKDQHGNWLMNSTKLR 502

Query: 337 ---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
                      ++      GGRAAIVL  S      +  G   IR WL+ +  I A + L
Sbjct: 503 GSVPPEQIFIERIVQLLRPGGRAAIVLPDSIF----SSPGLEFIRVWLMRHTHIIASIDL 558

Query: 394 PTDLFFRT-NIATYLWILSNRKTEE 417
             D F         +  +  + TEE
Sbjct: 559 HADTFQPHNGTQCSILFVVKKTTEE 583


>gi|319940141|ref|ZP_08014494.1| type IIS restriction enzyme M protein [Streptococcus anginosus
           1_2_62CV]
 gi|319810612|gb|EFW06942.1| type IIS restriction enzyme M protein [Streptococcus anginosus
           1_2_62CV]
          Length = 690

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 142/417 (34%), Gaps = 72/417 (17%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            +   V       ++  + R       +  +  +TPR V  L   L     D+       
Sbjct: 332 FYKIGVDTDFTGKLFNIMFRWLSFAGDDQNDVVLTPRYVALLMAKLARVNKDSY------ 385

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----------KIPPILVPHGQELEPETHA 253
               ++D   G+GG L  AMN + D                +        G E+ PE + 
Sbjct: 386 ----VWDFATGSGGLLVAAMNLMLDDAKKEITSPDELREKEEKIKAEQILGIEILPEIYM 441

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + V  M++         D S NI Q  +L K      ++ Y   N  F           +
Sbjct: 442 LAVLNMILMG-------DGSSNILQDDSLKK---FDGKYGYGKDNENFPA---------D 482

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               N      G G+  +            + ++     GG A+I++  S          
Sbjct: 483 VFLLNPPYSETGNGMNFVKRA--------LSMMK-----GGYASIIIQDSA-----GAGK 524

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWT 432
             EI + +LE++ + A + +P D+F   +N+ T +++    +  E + +V+ I+  +   
Sbjct: 525 AKEINQKILEHNTLLASIKMPMDIFIGKSNVQTSIYVFKVGEKHEAKHRVKFIDLRNDGY 584

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
              N  K +   N       +        G++  +++   FG   + +       +I D 
Sbjct: 585 KRSNRKKSKASTNLQDVDNAV--------GRYEEVVNLVRFGKAELNIFTEK--EYIEDV 634

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
             L+  +    W       +   +  ++   + +  Y   E  V + +K+ E  + K
Sbjct: 635 IALSGEKYGEDW-NFDQHIKISSIPSIRDFKKTVANYLSWE--VSQLLKNKEEDSSK 688


>gi|261838746|gb|ACX98512.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori 51]
          Length = 535

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 126/406 (31%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 116 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 175

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 176 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 232

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 233 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKDAKTTQ 284

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 285 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 339

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G  AAI++ 
Sbjct: 340 S-----------YEENGMPFIKFGLEYMQK---------------------GALAAIIIQ 367

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
            S    G   + +S I   +L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 368 DS---TGSGQALKSNI--EILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 422

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 423 PVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 468


>gi|153869117|ref|ZP_01998802.1| Type I Restriction Enzyme [Beggiatoa sp. PS]
 gi|152074333|gb|EDN71198.1| Type I Restriction Enzyme [Beggiatoa sp. PS]
          Length = 689

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 68/433 (15%), Positives = 121/433 (27%), Gaps = 75/433 (17%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRN 98
           + L+  +E     V                F K+        S      L      +T  
Sbjct: 193 KTLKDVIEEMEDEVLANAGVDVFEESFKLIFTKLYDEFTSANSHKRKRPLQFRVGVDTEA 252

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            + + I    +NA+  +E          L  + L           +L    +   V+   
Sbjct: 253 EVHAKIQKLFENAQEKWEGVFPPDAQIELSVSHLP-TCISYLQKYKLFNSNLE--VIDEA 309

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+LI +           + TPR V+ L   +L          +P    T+ D   G+ G
Sbjct: 310 FEYLINK---TSKGEKGQYFTPRYVIDLCVKML----------NPKPAETVIDTAAGSSG 356

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETH--------------------AVCVAG 258
           F   ++ HV       +          E +P  +                    A C+  
Sbjct: 357 FTVHSIFHVWKQLLQQEGKDETHLFTAENKPSHYVDYVRKKVFAIDFDEKAVRVARCLNL 416

Query: 259 MLIRRLESDPRRDLSKNIQQGST--------LSKDLFT---------------GKRFHYC 295
           +      +    +     +   T           D F                   F   
Sbjct: 417 IAGDGQTNVLHLNTLDWERWKETTGELKWLDRYNDGFKRLRKLTVDKKGENYRDFTFDVL 476

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF-------LMHLANKLEL 348
           ++NPPF    +  +   + E       R      + S  +  +       ++ +   L  
Sbjct: 477 MANPPFAGDIKDTRLIHKYELGKKADSRAVTQSTQKSSKNKGWQDKISRHILFIERNLHF 536

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYL 407
               GGR AIVL           S +  IR ++ +   I A+V L  + F   T   T +
Sbjct: 537 LKP-GGRMAIVLPQGVF----NNSSDYYIRDFIAKQCRILAVVGLHPNTFKPHTGTKTSV 591

Query: 408 WILSNRKTEERRG 420
             +     E + G
Sbjct: 592 LFVQKWNDEPKAG 604


>gi|118475739|ref|YP_892534.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414965|gb|ABK83385.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 1285

 Score = 94.1 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 128/370 (34%), Gaps = 26/370 (7%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            + E  +  + + Y       ++ E             S++  + + +   +N +  +I 
Sbjct: 302 DSFEAMQERLMKLYKDAMKEYLNEEITYVSDEQIDEQFSDFKRNKIKTQTLKNQINEFIR 361

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                + + F   +  +     + A +L  I K F  + L      ++++ N++E  +++
Sbjct: 362 MLKFYSHSDFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLT-QNKTNQLLGNLFELFLQK 420

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
               + +    F TP  +       L      L       I  + D  CG G FL +   
Sbjct: 421 ---GMKQDEGQFFTPIQICEFIVHSL-----PLKMLFDNGIPKVIDYACGAGHFL-NTYA 471

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++A   S+         +G E E     V      +                    L + 
Sbjct: 472 NIAKSISNDSEAINSNIYGIEKEYRLSKVAKVSAAMYGQSGVKIS-------YADALDES 524

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F  + F   ++NPP+  K    +   + E +  EL  F     + S+    F +  AN+
Sbjct: 525 KFKERDFDLLIANPPYSVKGFL-QTLSKNECEKYEL--FNYINLESSNAIECFFIERANR 581

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L        + AI+L SS L          + R  +L N  I +I    ++ F  T   T
Sbjct: 582 LL---KSNSKVAIILPSSIL---NKDGVYEKTREIILRNFDIISITEFGSNTFGATGTNT 635

Query: 406 YLWILSNRKT 415
            +  LS ++T
Sbjct: 636 VILFLSKKQT 645


>gi|187931838|ref|YP_001891823.1| N-6 DNA Methylase family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712747|gb|ACD31044.1| N-6 DNA Methylase family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 695

 Score = 93.7 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 108/412 (26%), Gaps = 99/412 (24%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICK 138
           F    E        T+  N+  S+I    +  K  FE    F        +      I K
Sbjct: 175 FKRLRENFREIHKGTSQEND--SFIQYRFEQVKIEFEKDHIFEPNETIRIRESSFEDIVK 232

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                 L        V    +E  + R           F TPR VV     +L    + L
Sbjct: 233 ELEKYNLT--KTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIKQNEL 287

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------------- 237
                     + DP  G+GGFL  A   V D      I                      
Sbjct: 288 ----------ICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKNLKQREVFGENLENIDDEK 337

Query: 238 -----------------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                                        G +  P    V    M++           + 
Sbjct: 338 LKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------DGHNG 391

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---------------- 318
                  L+ +     RF   L+NPPFG    KD   V +E K                 
Sbjct: 392 IHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDV 451

Query: 319 ---------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                       G+    L K  + S    +    +       GGR  IVL    L    
Sbjct: 452 YEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLKAGGRMDIVLPEGVL---- 507

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERR 419
             S   + R +      I  IV+LP DLF  +   + T L  L     EE+ 
Sbjct: 508 NSSNLQKAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQE 559


>gi|209406225|ref|YP_002154434.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Shi470]
 gi|190195547|gb|ACE73643.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Shi470]
          Length = 891

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKDAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFGLEYMQK---------------------GALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASIKMPTDLFMPLAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N + S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKAGLNAEVSK 612


>gi|56552830|ref|YP_163669.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56544404|gb|AAV90558.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 672

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 129/420 (30%), Gaps = 78/420 (18%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRN 98
             R L   +E     V     A      ++   +    Y   N+    S     + NT  
Sbjct: 189 FARSLRDLIEDMEDEVLAN--AGVDVFEEVFKLIFTKLYDEMNSHRLGSALRFRNQNTAA 246

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY--KICKNFSGIELHPDTVPDRVMS 156
            L++ I +  D+AK  +          RL    L       + +     + D + D    
Sbjct: 247 QLKTAIQNLFDDAKRKWPGVFLDDERIRLSPDHLQVCVGSLEEWKLFNSNLDVIDD---- 302

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +E+L+ +           + TPR V+ +   ++          +P    T+ D  CG+
Sbjct: 303 -AFEYLVSK---SSKGEKGQYFTPRWVIDMCVKMM----------NPKEGETVIDTACGS 348

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV----------CVA 257
            GF   +M HV                  E +P            A+             
Sbjct: 349 AGFTVHSMFHVWRQIMRAMGREESHLFTMEAKPPRCIDYVRDNVFAIDFDEKSVRVSRCL 408

Query: 258 GMLIRRLESDPRRDLS-KNIQQGSTLSKDLFTGK-----------------------RFH 293
            ++    E++     +    +   T+ +D +                           F 
Sbjct: 409 NLIAGDGETNVLHLNTLDWTKWDETVKQDDWQDTYGDGWRRLRKLRENPRQTDYRSFGFD 468

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF     +       +  + E       L K     +LF+    + L+     G
Sbjct: 469 VLMANPPFAGDIRQSDMLSPYDVAHNEKT---QKLEKAVARDLLFIERNLDFLKP----G 521

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           GR A+VL           S +  +R+++++   + A+V L  + F   TN  T +  +  
Sbjct: 522 GRMAVVLPQGRF----NNSTDQRVRKFIMDRCRVLAVVGLHPNSFKPHTNTKTSVLFVQK 577


>gi|320536548|ref|ZP_08036573.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320146603|gb|EFW38194.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 757

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 115/397 (28%), Gaps = 100/397 (25%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N   +  +  +  K  F +       A++E     ++       I  +  T  D V    
Sbjct: 238 NATPFYQNLFEKTKQEFANDKLFDDNAKIEIRENSFEQIVKELQIY-NLSTTSDDVKGIA 296

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E  + +           F TPR +V+   ++L           P     + DP CG+GG
Sbjct: 297 FEQFLGK---TFRGELGQFFTPRTIVNFMVSVL----------DPQEGEYICDPCCGSGG 343

Query: 219 FLTDAMNHVADC------GSHHKIPPILV------------------------------- 241
           FL  A  +V +           KI   L                                
Sbjct: 344 FLIKAFEYVREKIEKDIVAQKEKIKADLYDEKYEKMSDDEKKQIDHKMSEVANKLNEELN 403

Query: 242 ---------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                           +G +  P         M++                    L+ + 
Sbjct: 404 ILNDNGRLRSLSYDCIYGTDANPRMARTSKMNMIM------HGDGHGGVHHHDGLLNVNG 457

Query: 287 FTGKRFHYCLSNPPFGKKWEKD------KDAVEKEHKNGELGRFGPGLPK-------ISD 333
               RF   L+NPPFG + EKD          ++E       R+G    +         +
Sbjct: 458 IFENRFDVILTNPPFGARVEKDLKISYADMFTDEEKIEEYTARYGEAYKEALKQVNDNIN 517

Query: 334 GSMLFL---------MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            S+L L         +    +       GGR  IVL    L      +   ++R ++   
Sbjct: 518 KSLLSLYKIGSGLTEVLFIERRLNLLVPGGRMGIVLPEGVL----NNTNLQKVRDFVESK 573

Query: 385 DLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERR 419
             I  IV++P D+F  +   +   L        EE +
Sbjct: 574 AKILLIVSIPQDVFIASGATVKPSLLFFKKFNEEEAK 610


>gi|308185241|ref|YP_003929374.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori SJM180]
 gi|308061161|gb|ADO03057.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori SJM180]
          Length = 679

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 127/406 (31%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F    E+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQIGEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKNMKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG             L H+          GG  AI++ 
Sbjct: 484 S-----------HEENGMPFIKFG-------------LEHM--------QKGGLGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A V +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|257064729|ref|YP_003144401.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792382|gb|ACV23052.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 654

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 125/388 (32%), Gaps = 70/388 (18%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY TS+   S  G    +  + +           IF+       +  L    L Y I   
Sbjct: 218 FYATSDERGSRDGQLTVQKRVGAIFEKVKKRHGKIFD----EDAVIELTPRSLAY-IVSE 272

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             G  L    +   +    YE ++    + +      F TPR+V+ +   +L   D+   
Sbjct: 273 LQGYSLLNTNI--DIKGKAYEEIVG---ANLRGDRGQFFTPRNVMKMVVEMLDPTDE--- 324

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHV---------------------ADCGSHHKIPP 238
                    + D +CGTGGF+  AM HV                            ++  
Sbjct: 325 -------ERVADTSCGTGGFIVMAMTHVMQRIEAELVDEFGPREDWGVDETMAFQERVSD 377

Query: 239 ILV--PHGQELEPETHAVCVAGMLI-----------------RRLESDPRRDLSKNIQQG 279
           +      G +++ +        M++                    + D +  L+K I + 
Sbjct: 378 VASRNFFGFDIDRDLAKATKMNMVMNNDGSGNIMQTNSLLPPHEWDMDFKSRLAKAIGRD 437

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF- 338
                +  +   F   ++NPPFG K      ++  + +   +        K +    L  
Sbjct: 438 PKSLVNWKSLAMFDVIVTNPPFGTKIPIKDTSILGQFELAHIWECDKTTGKWTMTDRLQS 497

Query: 339 ----LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
                +    +       GGR  IVL  S L +     G   IR WL+ N  I A + + 
Sbjct: 498 SVPPEILFVERCTQFLVEGGRMGIVLPDSILGS----PGLGYIREWLIANHRIVASLDMH 553

Query: 395 TDLFFRT-NIATYLWILSNRKTEERRGK 421
            D F     + T + IL  +   E+  +
Sbjct: 554 QDTFQPHNGVQTSVLILQKKSQAEKDAE 581


>gi|302557220|ref|ZP_07309562.1| type I restriction system adenine methylase [Streptomyces
           griseoflavus Tu4000]
 gi|302474838|gb|EFL37931.1| type I restriction system adenine methylase [Streptomyces
           griseoflavus Tu4000]
          Length = 563

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 91/267 (34%), Gaps = 45/267 (16%)

Query: 162 LIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           L  RF   V     +   +PR VV        D               L+DP CG G  L
Sbjct: 145 LAERFTESVRRAGSDQVTSPR-VVRAVRHFAGDVAADAV---------LFDPACGIGTLL 194

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                 HGQE++  +  +  +      L    R +++     G 
Sbjct: 195 LT-----------LGAGQDTRRHGQEVDARSARLAQSR---AGLGGLTRTEIA----HGD 236

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +L  D + G +    + +PP        +D +          R+  G P  ++G + +L 
Sbjct: 237 SLRADRWPGLKADLVVCDPPVSDTDWGREDLLLD-------PRWELGTPSRAEGELAWLQ 289

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H           GGR  +V+ +S  +          IR  L+   ++  + ALP      
Sbjct: 290 HAYAH----TAPGGRVVMVMPASVAYRKAG----RRIRAELVRRGILTQVTALPPGTAAA 341

Query: 401 TNIATYLWILSN-RKTEERRGKVQLIN 426
            ++  +LW L   R  ++    V++++
Sbjct: 342 HSLPVHLWHLRRPRTPDDAATTVRMVD 368


>gi|317011606|gb|ADU85353.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori SouthAfrica7]
          Length = 679

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 125/407 (30%), Gaps = 74/407 (18%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIARLEKAGLLYKICK 138
           F   SE+  +   S   R+ +         +  +      D  +    LEK   + K   
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLESFKEIRKDPQRDKITSLD-KAISMHLEKDASITKQIF 318

Query: 139 NF------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL 
Sbjct: 319 TFLYELVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL- 376

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPIL 240
                           + D   G+ GFL  +M             +        K     
Sbjct: 377 ---------GVNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKAMKTT 427

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G EL  E  ++    M++R   S      +       T     +   + +  L NPP
Sbjct: 428 QLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETNKKT-----YEDFKPNILLLNPP 482

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F             E       +FG             L H+          GG  AI++
Sbjct: 483 FS-----------HEENGMPFIKFG-------------LEHM--------QKGGLGAIII 510

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERR 419
             S   +G+A     EI    L+   + A V +PTDLF     + T ++I    +  +  
Sbjct: 511 QDSA-GSGQALKSNVEI----LKKHTLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHDYE 565

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
             V+ I+  +        G         +  +I+ IY +  + K S+
Sbjct: 566 KPVKFIDFRNDGFKRTKRGLNETSSPTKRYEEIIKIYKAGLSAKVSK 612


>gi|88860311|ref|ZP_01134949.1| putative type I restriction-modification system, methyltransferase
           subunit [Pseudoalteromonas tunicata D2]
 gi|88817509|gb|EAR27326.1| putative type I restriction-modification system, methyltransferase
           subunit [Pseudoalteromonas tunicata D2]
          Length = 428

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 132/334 (39%), Gaps = 55/334 (16%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI--YEHL------IRRFGSEVSEGAEDFM 178
           LE         ++ + I + P++V  R++ +I  +E L      IR    + +     F 
Sbjct: 64  LELRKKYKTAFEHCTEINILPESVITRIVYSIASFEDLSAFAPAIRELLIDHAGKHGQFG 123

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           +   +  L T L+ D             +TL D  CG           +A   S  K   
Sbjct: 124 STAYMEKLITKLVGD----------ASQKTLLDAACG-----------LARTSSLIKTKQ 162

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             +   QEL  E+ ++    +L+           +  I  G++LS+  F GK+F   +  
Sbjct: 163 TFL---QELFLESASLSNRLLLLEG--------KNLEIFTGNSLSEFKFEGKKFDLVVME 211

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP  +K+E +    E EH    +   G      S G  +++    ++L    N  G+A +
Sbjct: 212 PPLAQKFESNF-RTELEHSPFIITEQGK-SIPTSAGDAIWMQFALHQL----NETGKAYL 265

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF    G  ++ +R  LL ++L++ IVALP+ +   T I   L +L   K   +
Sbjct: 266 VLPQGCLFR---GGYDAAVREHLLNHELVDYIVALPSGVLNGTGIEPVLLVLDKAKV--K 320

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
              ++ I+  D+        K    ++     +I
Sbjct: 321 GSPIRFIDIRDIGHK----NKFHIELSKSDLEEI 350


>gi|313143599|ref|ZP_07805792.1| restriction modification enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128630|gb|EFR46247.1| restriction modification enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 1211

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 130/382 (34%), Gaps = 28/382 (7%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           E +   L + + +  ++ +I      +   F   +  +    L+ A +L +I + F+  +
Sbjct: 402 EKAFKKLHANDLKAQIQKHIKELKFYSNNDFAFLEVHNKELFLQNAIVLKEIIELFAPYK 461

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L  ++  ++ + N++E  +++    + +    F TP  +       L  P D++ K S  
Sbjct: 462 LTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICEFIMYSL--PLDSMTKASKP 515

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +   + D  CG G FL    N +               +G E E     V      +   
Sbjct: 516 L--KVLDFACGAGHFLNTYANELKRYIKQDLQEHYKQIYGIEKEYRLSKVAKVSSAMYGQ 573

Query: 265 --------ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                   ++    +L           K       F   ++NPP+  K   +  + +   
Sbjct: 574 NEINILYADALATHELENPKTDKGNKQKPQINNHSFDLLIANPPYSVKGFLETLSAK--- 630

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                  F   +   ++ ++        +         +AAI+L SS L           
Sbjct: 631 SKKIYTLFTNDINIETNNAIECF--FIERANQLLRDNAKAAIILPSSIL---NKDGIYKS 685

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            R  L  N    AIV L +  F  T   T +  L  ++             +  +++I+N
Sbjct: 686 TREILFANFDFIAIVELGSQTFGATGTNTIILFLRKKENYTPENTTI----SQDYSNIKN 741

Query: 437 EGKKRRIINDDQRRQILDIYVS 458
             +   ++ ++  +  +  + +
Sbjct: 742 YIESGNLLRNETYKNYVKAFNA 763


>gi|224437132|ref|ZP_03658113.1| type II restriction-modification enzyme [Helicobacter cinaedi CCUG
           18818]
          Length = 1171

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 130/382 (34%), Gaps = 28/382 (7%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           E +   L + + +  ++ +I      +   F   +  +    L+ A +L +I + F+  +
Sbjct: 362 EKAFKKLHANDLKAQIQKHIKELKFYSNNDFAFLEVHNKELFLQNAIVLKEIIELFAPYK 421

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L  ++  ++ + N++E  +++    + +    F TP  +       L  P D++ K S  
Sbjct: 422 LTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICEFIMYSL--PLDSMTKASKP 475

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +   + D  CG G FL    N +               +G E E     V      +   
Sbjct: 476 L--KVLDFACGAGHFLNTYANELKRYIKQDLQEHYKQIYGIEKEYRLSKVAKVSSAMYGQ 533

Query: 265 --------ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                   ++    +L           K       F   ++NPP+  K   +  + +   
Sbjct: 534 NEINILYADALATHELENPKTDKGNKQKPQINNHSFDLLIANPPYSVKGFLETLSAK--- 590

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                  F   +   ++ ++        +         +AAI+L SS L           
Sbjct: 591 SKKIYTLFTNDINIETNNAIECF--FIERANQLLRDNAKAAIILPSSIL---NKDGIYKS 645

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            R  L  N    AIV L +  F  T   T +  L  ++             +  +++I+N
Sbjct: 646 TREILFANFDFIAIVELGSQTFGATGTNTIILFLRKKENYTPENTTI----SQDYSNIKN 701

Query: 437 EGKKRRIINDDQRRQILDIYVS 458
             +   ++ ++  +  +  + +
Sbjct: 702 YIESGNLLRNETYKNYVKAFNA 723


>gi|254384451|ref|ZP_04999792.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
 gi|194343337|gb|EDX24303.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
          Length = 561

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 43/287 (14%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             + L  + V     +++ E L  R    V     D +T   ++              F 
Sbjct: 118 DAVRLSEELVRSGSAASVVEGLATRITDSVGRSGSDHVTSERILRAL---------RHFA 168

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            +     T+ DP CG G  L                   L   GQE EP +  +      
Sbjct: 169 GTLPADATVMDPACGIGTLLLTVGPRYG-----------LKRFGQEREPHSARLAQ---- 213

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
              L +D       ++ +G +L  D +        + +PP G      +  +        
Sbjct: 214 ---LRADLGGQADVSVTEGDSLCADQWPQVCADLVVCDPPVGVTDWGREALLLD------ 264

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R+  G P  ++G + +L H           GGR  +V+ +S  +          IR  
Sbjct: 265 -SRWEFGTPPKAEGELAWLQHAYAH----TAPGGRVLMVMPASVAYRKAG----RRIRAE 315

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
           L+   ++  +VALP  +     +  ++W L+    T +    V+L++
Sbjct: 316 LVRRGVLTQVVALPGGVAASHALPVHVWQLTRPLSTGDAATAVRLVD 362


>gi|218437966|ref|YP_002376295.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218170694|gb|ACK69427.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 911

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 85/512 (16%), Positives = 156/512 (30%), Gaps = 84/512 (16%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +     L K     +  +N+S IE         ++ + +E +IR       +    F TP
Sbjct: 300 NEDKFPLNKLIYTIQSLENYSFIEGRSSLDGRDILGDFFEQIIR---DGFKQTKGQFFTP 356

Query: 181 RDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
             +V     AL +D            +  + DP CG+G FL +AM  +     + +   +
Sbjct: 357 TSIVKFVLYALQIDQLAIECLNQKLELPFICDPACGSGTFLIEAMKIITKEIKYKQKDKV 416

Query: 240 LV-------------------------PHGQELEPETHAVCVAGMLIRRLESDP------ 268
                                       +G E+  +        M++    +        
Sbjct: 417 KTSRQVKDRFDDFFQPDHKENRWAERFLYGIEINFDLGTASKVNMILHGDGASNIFVMDG 476

Query: 269 ----------RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                     +   +  I +  +L       + F   +SNPPF          ++ + KN
Sbjct: 477 LLPFRFYTKDKVTSTLQIYKNDSLYFQKEVNEEFDIVISNPPFSVD-------LDNQTKN 529

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                F  G  K S            +        GR  +VL  S             IR
Sbjct: 530 YLNRIFLYGTKKNSKN------LFIERWYQILKDRGRLGVVLPESVFDTTEN----KYIR 579

Query: 379 RWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINAT-DLWTSIRN 436
            +L +   ++A+V+LP   F   T+  T L     +   E     +L       W++++N
Sbjct: 580 LFLFKYFNVKAVVSLPQITFEPYTSTKTSLLFAQKKTKTEIEQWTKLWEQYGKEWSTLKN 639

Query: 437 EGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           +               + +YV  +N   +S + D       +  +LR L+   I +   L
Sbjct: 640 KVSNY-----------IKVYVENKNQNNYSSIKD-DNEKTIKTNLLRYLKNYIIENDKKL 687

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES-----FVKESIKSNEAKTLKV 550
           + +E    +      +  F  DI          + + E      +    I   E   +  
Sbjct: 688 SIIEILEKYSNEIQENSKFDQDIKDTFGYYNPWWVFNEVAQHFHYENYEIFMAEVSNVGY 747

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
           K +K       N     D    P+     + I
Sbjct: 748 KRTKRGEKNMPNEL--YDEEVAPMFIDKEKII 777


>gi|308272576|emb|CBX29180.1| hypothetical protein N47_J01610 [uncultured Desulfobacterium sp.]
          Length = 226

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 86/256 (33%), Gaps = 46/256 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVRE 57
           M+    + + + + +W     L  D     +G  +        L+  +   +P  +    
Sbjct: 1   MSNEASNTSGIISKVWSFCNTLRDDGVG--YGDYLEQLTYLLFLKMADEFSKPPHNRELN 58

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              A+                        SL+        ++  + +   S ++K I   
Sbjct: 59  IPKAYTWE---------------------SLTVKRGAELESHYTTLLRELS-HSKGILGQ 96

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F  +  +++    L+K+       +     +   +   IYE L+ +   +   GA  +
Sbjct: 97  I-FIKSQNKIQDPAKLFKLIDMIDKEQWT--VMGTDIKGKIYEGLLEKNAEDTKSGAGQY 153

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CG 231
            TPR ++    A +           P  ++++ DP CGTGGF   A +++++        
Sbjct: 154 FTPRALIKAMVACV----------QPQPMKSIADPACGTGGFFLAAYDYISNSENFTLTK 203

Query: 232 SHHKIPPILVPHGQEL 247
              +       +G E+
Sbjct: 204 EQKEYLKYKTFYGNEI 219


>gi|296875872|ref|ZP_06899933.1| type II DNA modification protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296433113|gb|EFH18899.1| type II DNA modification protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 811

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 110/335 (32%), Gaps = 54/335 (16%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++ I +     L  K+   F+    H  T  +  +M   YE  + +F    +      +T
Sbjct: 263 NTAILKQILDELNQKVIPLFNN---HFSTNSNYDIMGKFYEEFL-KFAGVSNVKKGIVLT 318

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPP 238
           PR +  L T L+                 + D  CGTG FL   MN +    G+  K   
Sbjct: 319 PRHITGLFTKLI----------PLKANDVILDLCCGTGAFLIAGMNKLLSIQGADEKNIK 368

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G E+    +   ++ ML R    D +  +          +  +    +      N
Sbjct: 369 ENQLLGFEINSTMYICAISNMLFRG---DGKSRIYNLDSVNDKEADKILKEVKPTIGFIN 425

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+  K  KD D   KE                              L+   +   R  +
Sbjct: 426 PPYSGKENKD-DPTPKE---------------------------ITFLKKLLDNCSRYGV 457

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           V++   ++       +  +R  +L    ++ ++ +P DLF    + +T + +       +
Sbjct: 458 VIAPLSMYF-----KDKSLRNKILSKHTLKYVINMPKDLFQPNASTSTAIAVFETHLPHD 512

Query: 418 RRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQ 451
               V   +   D +   +N+G+     + +   +
Sbjct: 513 YNNDVVFYDLKNDGFILSKNKGRTDIYDHWNDIEE 547


>gi|145631344|ref|ZP_01787116.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144983129|gb|EDJ90629.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 169

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 20/166 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           M       A L   IW+ A D+ G     DF + +L     R +        E    +V 
Sbjct: 1   MVAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVN 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------- 107
              L       D+++        F   S+   + + + NT  NL + +            
Sbjct: 61  YAKLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVVATANTNPNLNTELKQIFSDIENSAT 120

Query: 108 ----SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH 146
                 + K +F DFD +S        +K   L  + K  + ++  
Sbjct: 121 GYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFG 166


>gi|237747527|ref|ZP_04578007.1| RM-CspCI protein [Oxalobacter formigenes OXCC13]
 gi|229378889|gb|EEO28980.1| RM-CspCI protein [Oxalobacter formigenes OXCC13]
          Length = 682

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 113/357 (31%), Gaps = 69/357 (19%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           F+F  +   L   G L K+  +                ++S+ Y   ++   +       
Sbjct: 327 FNFIKSHTALIDEGYLIKLVADIQKEVRPFIKSNKYFDIVSHCYVEFLKY--ANNDSALG 384

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCG 231
             +TP  +  L   +     D++          + D  CGT GFL  AM  +        
Sbjct: 385 IVLTPAHITELFCDIAGVTKDSV----------VLDNCCGTSGFLIAAMQKMVALAKGDS 434

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
              +        G E +     + V+ M+I         D   NI +G    K       
Sbjct: 435 KEIENIKKERLIGIEYQDHIFTLAVSNMIIHG-------DGKTNIIKGDCFKKIQDAAAY 487

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +    L NPP+      D+                             L  + N L    
Sbjct: 488 KPTVGLLNPPYNDVTGIDE-----------------------------LEFVENNLSAIQ 518

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G   AIV     L+    G+   EI++ LLE   +EA++++P DLF+   + T + + 
Sbjct: 519 QNGIVVAIVPMRCALYQDGRGA---EIKKRLLEKHTLEAVMSMPDDLFYPVGVVTCVMVF 575

Query: 411 SNRKTEER-RGKVQLINATDLWTSIRNEGKKRRIINDDQRR------QILDIYVSRE 460
                 +  R K         W        K R   D Q R        L+++ +RE
Sbjct: 576 RAHVPHQSGRRKTWF----GYWKDDGFLKAKHRGRIDAQERWGGIKSHWLNMFRNRE 628


>gi|257457139|ref|ZP_05622316.1| DNA methylase-type I restriction-modification system [Treponema
           vincentii ATCC 35580]
 gi|257445518|gb|EEV20584.1| DNA methylase-type I restriction-modification system [Treponema
           vincentii ATCC 35580]
          Length = 670

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 120/360 (33%), Gaps = 70/360 (19%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +T   L+  I    D AK  ++   FS     L     L     +   ++L    +   V
Sbjct: 258 DTETELKDKIQKLFDKAKNKWDGV-FSQDAKILLSPSHLSVCVSSLQDVKLFNSNL--DV 314

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + +E+L+ +           + TPR V+ +   +L          +P    T+ DP  
Sbjct: 315 VDDAFEYLMSK---SSKGEKGQYFTPRYVIDMCVKML----------NPKADETMIDPAS 361

Query: 215 GTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQEL--------EPETHAV----------C 255
           G+ GF    + +V         I    +   QE              A+           
Sbjct: 362 GSCGFPVHTIFYVWKQILKEKGIEQSHLFTSQEKPAECTDYVNDNVFAIDFDEKAVRVAR 421

Query: 256 VAGML----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------------FH 293
              ++          +  L+ +   D +K      T ++     K+            F 
Sbjct: 422 TLNLIAGDGQTNVLHLNTLDYERWEDTTKTEDWTDTYNEGWKKFKKLRTIKNSNYSFEFD 481

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF    ++ +   + E      G++   + +     +LF+    N L+     G
Sbjct: 482 ILMANPPFAGDIKEQRIIAKYELGKNARGKYQSNVGR----DILFIERNLNFLKP----G 533

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           GR AIVL           S +  IR ++ E   I A+V L  ++F   T   T +  +  
Sbjct: 534 GRMAIVLPQGRF----NNSSDKYIRDFITERCRILAVVGLHGNVFKPHTGTKTSVLFVQK 589


>gi|317179649|dbj|BAJ57437.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 679

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    L+K   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLKKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKDAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFGLEYMQK---------------------GALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|291534097|emb|CBL07210.1| Type I restriction-modification system methyltransferase subunit
           [Megamonas hypermegale ART12/1]
          Length = 510

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 69/456 (15%), Positives = 155/456 (33%), Gaps = 46/456 (10%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIR 207
               + + +++E L+ +      +    F TP  +       + L+    + KE      
Sbjct: 13  NAKHQFLGDLFEQLLNK---GFKQNEGQFFTPTPIAKFIWESIPLENILNINKEIKYP-- 67

Query: 208 TLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            + D  CG+G FLT+ ++ +    G++          G E +     V    + +     
Sbjct: 68  KVIDYACGSGHFLTEGIDVINKIIGNNDNSWVSENIFGIEKDYRLARVSKVSLFMNG--- 124

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               ++       +   K++   ++F   ++NPP+  K  K+   + +            
Sbjct: 125 AGNGNIVFGDGLDNAKDKNI-ENEKFDILVANPPYSVKAFKNHLNLGENSFELFDKISDD 183

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G     +  +LF+  +   L+     G  A ++L  S L N  +    +  R  LL+N  
Sbjct: 184 G----GEIEVLFIERIVQLLKP----GAVAGVILPLSILSNNTSSYIGA--REVLLKNFD 233

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK--------VQLINATDLWTSIRNEG 438
           I++IV+L +  F  T   T +  L       ++ K        +   N +D W   +   
Sbjct: 234 IKSIVSLGSKTFGATGTNTVILFLKKHNEPPKKYKMIEDSINAIFENNFSDDWIDRKIYL 293

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
              R I  D    I + ++ ++   + + +D     Y               + +   ++
Sbjct: 294 DYLRHIEVD--ENIYNEFIMKKIN-YKKFVDNYFKMY-----------VIAFENSSNVKI 339

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
                ++  S   Q+  L+  K   + +Y     + F    I+ N+   +      +   
Sbjct: 340 NEKNAFKNQSEKEQNKILN--KKFYEYVYEIEKDKLFFFGMIRENKTIIVTAPVENTKQK 397

Query: 559 AFINAF-GRKDPRADPVTDVNGEWIPDTNLTEYENV 593
            F+      +        +  G  + D +  + +  
Sbjct: 398 EFLGYDWSNRKGNEGIQINKMGGMLFDEDNRDDKKY 433


>gi|219883431|ref|YP_002478591.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
 gi|219867577|gb|ACL47913.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
          Length = 668

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 106/337 (31%), Gaps = 73/337 (21%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-------KE 201
            +   V+  + +  +R       EG   ++TP  V     A+                 E
Sbjct: 302 DIAADVLGRLLDVFLR--AKFKPEGMGVYLTPAPVKQAMLAIAFHDIKTETPELLTARGE 359

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPIL------VPHGQE 246
                    DPTCG+ GF + AM ++          +  S  +   +          G +
Sbjct: 360 DGKPAFRFCDPTCGSYGFGSVAMGYLERALMDVLGKETSSDIRRDKLFRDMCEYSFVGAD 419

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KW 305
              E   +    M +           +K  +   +   +      +    +NPPFGK K 
Sbjct: 420 NSQEMVTLARVNMALLG------APKAKIFRTSDSRISEQLKPCSYDLICTNPPFGKLKG 473

Query: 306 EKDKDAVEKEHKNGELGRFGPG----------------------LPKISDGSMLFLMHLA 343
               DAV +  ++    R   G                          S G  L ++ + 
Sbjct: 474 PAQNDAVLEYFQSDLKERKKKGTFDYEPSVDGLALGGKPDNKGIWKPASSGIDLAILFID 533

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL------------IEAIV 391
             L+L    GGR  IVL    L      SG+  +R +++                ++A++
Sbjct: 534 RCLQLLKP-GGRLLIVLPDGVL----CNSGDRYVREYIMGQKDAVTGQFHGGKAIVKAVI 588

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLIN 426
           +LP+D F    T   T +  L  RK      K   ++
Sbjct: 589 SLPSDTFKLSGTGAKTSILYLQKRKANPETPK-HFLD 624


>gi|308062736|gb|ADO04624.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Cuz20]
          Length = 679

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEEIKNAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFGLEYMQK---------------------GALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A V +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N + S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKAGLNAEVSK 612


>gi|319956396|ref|YP_004167659.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
 gi|319418800|gb|ADV45910.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
          Length = 676

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 124/344 (36%), Gaps = 72/344 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                ++  +    G    +  +  +TP  + +L   L     D+           ++D 
Sbjct: 336 DFTGKLFNEMYGWLGFSQDKLNDVVLTPSYIANLLVKLARVNKDSY----------VWDF 385

Query: 213 TCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             G+ G L  AMN +            +              G E+    + + +  M++
Sbjct: 386 ATGSAGLLVAAMNEMINDARNTIASPEELAHKEAKIKAEQLLGLEVLSNIYMLAILNMIL 445

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D S NI    +L+ D     ++ Y  +N  F           +    N   
Sbjct: 446 MG-------DGSSNILNEDSLTFDG----KYGYGKTNERFPA---------DAFILNPPY 485

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-SEIRRW 380
              G G+  +        +++ NK        G AAI++       G AGSG+  EI + 
Sbjct: 486 SAEGNGMVFVEKA-----LNMMNK--------GYAAIII------QGSAGSGKAKEINKR 526

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+   + A + +P+DLF   +++ TY+++    +   +  +V+ I+ ++   +  N  +
Sbjct: 527 ILKKHTLIASIKMPSDLFIGKSSVQTYIYVFRVNEAHHKDERVKFIDFSNDGYTRSNRKR 586

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
            +  I D  R +           ++  ++D   FG  ++ +L  
Sbjct: 587 AKNNIKDTDRAK----------ERYQELVDLVRFGKSKLNILTE 620


>gi|308064231|gb|ADO06118.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Sat464]
          Length = 679

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKDAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFGLEYMQK---------------------GALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASIKMPTDLFMPLAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N + S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAEVSK 612


>gi|327398989|ref|YP_004339858.1| N-6 DNA methylase [Hippea maritima DSM 10411]
 gi|327181618|gb|AEA33799.1| N-6 DNA methylase [Hippea maritima DSM 10411]
          Length = 714

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 149/425 (35%), Gaps = 61/425 (14%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNF 140
              T    N  N  +  I  F    + +FED               L     +  + +  
Sbjct: 296 FYITNKEANYSNLNDEKIEPFLKRMQKLFEDAQSTYYTILKEQKINLRNNAHVKILVETV 355

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGS-EVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
              +    +      +++Y+ +  RF S    E    F+TP  ++     ++        
Sbjct: 356 K--QFQDFSFVKSHKTDLYQLIFYRFASAFSKEQKGQFITPLPLIDFLVEIV-------- 405

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
             +P    T+ DPT G   FL+ +        S+ K+      +G + + +   +    M
Sbjct: 406 --NPRNGETVIDPTAGVADFLSVSY-----VNSNSKLDDNN-IYGVDNDEQMVMLAQLNM 457

Query: 260 LIRR--------------------LESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSN 298
           L+                      ++++P   +     +G+    +D     +F   L+N
Sbjct: 458 LLNGDGNAKLYYIPDKGSITHKISIKNEPVELIPDLHSKGNWDNWRDDTKLLKFDVVLTN 517

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG+  + +    E++        +   + +  +   L L+ L N   +     GR  I
Sbjct: 518 PPFGEDRKWEPKTTEEKKLAELYELWH--IARAGNWIDLGLVFLENAYRILKE-NGRLGI 574

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS+S     R      + R+WL++   I A+  LP ++F  T + T L +      +E 
Sbjct: 575 VLSNSIASIDR----WEKARKWLIDKMRIVALFDLPANVFADTGVNTTLIVAYKPNPKEL 630

Query: 419 RG------KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           +       +V + +   +   ++ + + +      +  +  + +   ++ +   +LD   
Sbjct: 631 KRLKEQNYEVFVKDIQKVGYEVKTKKRVKYFEPIYKIDK--ETFEVVQDEEGRPVLDEEF 688

Query: 473 FGYRR 477
               +
Sbjct: 689 TQTIK 693


>gi|303236690|ref|ZP_07323271.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
 gi|302483194|gb|EFL46208.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
          Length = 757

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 108/396 (27%), Gaps = 102/396 (25%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N   +  +  +  K  F +       A++E     ++       I  +  T  D V    
Sbjct: 238 NAIPFYQNLFEKTKQQFANDHLFDDNAKIEIRENSFEQIVKELEIY-NLSTTSDDVKGIA 296

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E  + +           F TPR VV    ++L           P     + DP CG+GG
Sbjct: 297 FEKFLGK---TFRGELGQFFTPRTVVDFMVSVL----------DPQEGELVCDPCCGSGG 343

Query: 219 FLTDAMNHVADCGSHHKIPPILV------------------------------------- 241
           FL     +V +                                                 
Sbjct: 344 FLIKTFEYVREKIEKEIEQQKETIKAKYYGDDYDKLPDKKKQKIEAEVAQTFSYLNEELN 403

Query: 242 ---------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                           +G +  P         M++                    L+ + 
Sbjct: 404 INNEKGRLRSLSFDCIYGTDANPRMARTAKMNMIM------HGDGHGGVHHHDGLLNVNG 457

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG------RFGPGLPK---------- 330
               RF   L+NPPFG + EKD    E +    +        R+G    K          
Sbjct: 458 IFENRFDIILTNPPFGARVEKDLKISEADRFTDKAKISSYVERYGEAYNKALRQVNDNIN 517

Query: 331 -------ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                    D S+  ++ +   L L    GGR  IVL    L          + R ++  
Sbjct: 518 KSLLSLYKIDSSLTEVLFIERCLNLLKP-GGRMGIVLPEGVL----NNPNLQKARDFVEG 572

Query: 384 NDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEE 417
              I  IV++P D+F  +   +   L        EE
Sbjct: 573 KAKILLIVSIPQDVFIASGATVKPSLLFFKKFTEEE 608


>gi|317182677|dbj|BAJ60461.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57]
          Length = 679

 Score = 91.4 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    L+K   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLKKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKDAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFGLEYMQK---------------------GALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALRSNVEI----LKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|297380673|gb|ADI35560.1| Restriction enzyme BgcI subunit alpha [Helicobacter pylori v225d]
          Length = 679

 Score = 91.4 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKDAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG    +                      G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFGLEYMQK---------------------GALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASIKMPTDLFMPLAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|170718764|ref|YP_001783948.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826893|gb|ACA32264.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 1110

 Score = 91.4 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 115/395 (29%), Gaps = 37/395 (9%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV---AGYSFYNTSE---------- 85
             L +++   E           A   +  DL+  ++     G   +   E          
Sbjct: 276 LFLAKIKDESENPNELKVYWKGAAQDNYFDLQDRLQALYKKGMDEFLGEEITHVTKEEIE 335

Query: 86  --YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
             + L       T+  +              F   D  +     +   +L ++ +    I
Sbjct: 336 AAFILFKNKKDETKKTILDKFTEIKYYTNNDFAFLDVHNKKLFFQNGAILKEVVQMLQDI 395

Query: 144 ELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            L  D    ++ + +++E  + +    V +    F TP  +V    + L   D     ++
Sbjct: 396 RLKTDNGGENQFLGDLFEGFLDQ---GVKQSEGQFFTPLPIVRFLVSSLPLADLISGSDA 452

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAG 258
           P     + D  CG G FL +  + +       K       +    G E E     V    
Sbjct: 453 PP---KMIDYACGAGHFLNEYASQIRPLVQAFKQADTAPYYQAIVGIEKEYRLSKVAKVS 509

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +   +                  K       F   ++NPP+  K   D  + ++    
Sbjct: 510 AFMYGQDGIQIVYGDGLTAHND---KVKVENGAFSVLVANPPYSVKGFLDTLSDDECKSF 566

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                        S            +        G AAI+L SS L N   G+   + R
Sbjct: 567 SLYKHVDKTDTFNS-----IETFFIERTAQLLQQNGVAAIILPSSVLSN---GNIYIKAR 618

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
             LL++  I AI    +  F +T   T    L  +
Sbjct: 619 EILLQHFDIVAIAEFGSGTFGKTGTNTVTLFLRRK 653


>gi|225619348|ref|YP_002720574.1| type II restriction-modification enzyme [Brachyspira hyodysenteriae
           WA1]
 gi|225214167|gb|ACN82901.1| type II restriction-modification enzyme [Brachyspira hyodysenteriae
           WA1]
          Length = 793

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 89/599 (14%), Positives = 184/599 (30%), Gaps = 93/599 (15%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
               +    + ++++     G   D + F    G +F +  E       +   R  L+  
Sbjct: 233 FSSLVNIILAKIQDESEKKKGEKYDFQIFSYKDGNTFESDEELF--NRINELYRRALKQR 290

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           +    +N     + F        L K        + FS ++         ++ + +E +I
Sbjct: 291 LNINDENKLK--KSFVVDENKFSLNKLKYTVSEIERFSFVDGKNSFTGKDILGDFFEGII 348

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           R       +    F T  ++V      L +D        +   I  + DP+ G+G FL +
Sbjct: 349 R---EGFKQTKGQFFTHINIVKFMLWGLQIDKLAIDRINNDLEIPYMIDPSAGSGTFLIE 405

Query: 223 AMNHVADC-------------------------GSHHKIPPILVPHGQELEPETHAVCVA 257
            M  + +                                      +G E           
Sbjct: 406 YMKFITENIKRRFFDELDKSRDVEDKFAQWFQPDHRENKWAKDFIYGIETNFNLGTATKV 465

Query: 258 GMLIRRLES------DPRRDLSKNIQQG----------STLSKDLFTGKRFHYCLSNPPF 301
            M++    S      D     +   ++            ++  D     +F   L+NPPF
Sbjct: 466 NMILHGDGSSNIFVKDGLLPFNFYSKEQSPNYLKQYDKDSIYNDKNVNGQFDCILTNPPF 525

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                     ++ + KN     F  G  K S+           +        GR A VL 
Sbjct: 526 SV-------TLDNDTKNNLKDGFLFGDKKNSEN------LFIERWYQLLKNNGRFAAVLP 572

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
            S             IR ++ +   I+A+++LP   F   T+  T +     +  EE   
Sbjct: 573 ESVFDTTEN----KYIRIFIYKYFKIKAVISLPQLTFEPFTSTKTSILFAQKKTKEELEQ 628

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
                   ++W    +E  K +   ++    I+D+Y++ ++         +     ++  
Sbjct: 629 W------NEVWKKYSDEWSKLKTRAEN----IIDVYINGKSEA-------KLTSINKLSE 671

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV---- 536
                + + L K  +   +  ++  +L+  ++    +I K        +G+  S      
Sbjct: 672 EERKDILYRLLKNYIEEYDKSLSILELTKKYEYELKEICKYDNDTKDIFGYVNSHWVFGE 731

Query: 537 -----KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
                  SI   EA+ +  K +K       N   R + + + + D N +      L + 
Sbjct: 732 LSKGLNYSILMAEAENIGYKRTKRGEKIMPNELYRMNNKGEIIVDDNKKETILDYLRDI 790


>gi|256027310|ref|ZP_05441144.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. D11]
          Length = 834

 Score = 91.4 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 108/320 (33%), Gaps = 34/320 (10%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
              ++N ++I E+ D +S   + E   +     K    I    + +P  +   +YE L  
Sbjct: 302 RENTENNESIKEEIDKNSNKKKNESTLMKIH--KAIEEIN-STNDLPIDLFGEVYECLAS 358

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   +      +F T R ++     +     D         I    DP CGTGGFLT++ 
Sbjct: 359 K---KTKSMLGEFFTRRHIIKAIVRMFFSSKDIKDIIKYKKIIV--DPACGTGGFLTESF 413

Query: 225 NHVADCGSHHKIPPILVPH--------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            ++ +     K                G ++   +       M++           +   
Sbjct: 414 KYIKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMILTGDGFSDIDRYNTLQ 473

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                  ++    K   Y L+N P+G+      +    E                ++ + 
Sbjct: 474 ANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFI-------------KNNKNK 520

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              ++   K+      GGRA+I+L    L      +     R +LL    IE I++LP  
Sbjct: 521 RLELNFVLKIIEMLKEGGRASIILPEGLLEAPTLSN----FRDYLLRQCKIETIISLPKF 576

Query: 397 LFF-RTNIATYLWILSNRKT 415
            F   T   TY+  L  R+ 
Sbjct: 577 AFAPYTKWKTYVIFLEKREK 596


>gi|254462365|ref|ZP_05075781.1| type I site-specific deoxyribonuclease [Rhodobacterales bacterium
           HTCC2083]
 gi|206678954|gb|EDZ43441.1| type I site-specific deoxyribonuclease [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 697

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 121/451 (26%), Gaps = 119/451 (26%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
           T+ +++  L S  + N L++      D+      D  F        K     +I +    
Sbjct: 180 TNLFTVDVLKSQLSENPLDTLFQQTKDHYST---DKIFDEDERINLKPATGEEIVRKLEK 236

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
             L      + V    +E  + R           F TPR +V     +L           
Sbjct: 237 YNLS--DTSEDVKGVAFERFLGR---TFRGEIGQFFTPRTIVEFMVHML----------D 281

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC-------------------------------- 230
           P     + DP  G+GGFL      V +                                 
Sbjct: 282 PQEGEIVCDPASGSGGFLIRVFEIVRESILADADKQYNRFKEEIEADKSLAEEERAKRLK 341

Query: 231 ---------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
                          GS          +G +            M++             +
Sbjct: 342 AKYEDIRSNLDQSVEGSRLWKLSNRCIYGTDANDRMARTSKMNMIM-----HGDGHGGVH 396

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE------------HKNGELGR 323
              G      +F G RF   L+NPPFG   E     +  E             + GEL R
Sbjct: 397 HHDGFLNVNGIFEG-RFDIILTNPPFGANVEPSDKILPSEIEVSPAAERRYLAEYGELYR 455

Query: 324 FGPGLPK-------------------ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                 K                        +LF+    + L+     GGR  IVL    
Sbjct: 456 ESQDRVKAHVNKPIASMFKLPATEKSKIKTELLFIERCLDLLK----PGGRMGIVLPEGI 511

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE----- 417
                     + +R +  +   + A+V+LP + F     ++   L  L    +EE     
Sbjct: 512 F----NNPSLTRVREFTEDRAFLLAVVSLPAETFVSSGASVKCSLLFLKKFTSEEEEKFA 567

Query: 418 --RRGKVQLINATDLWTSIRNEGKKRRIIND 446
             R+     ++    +       + +  I D
Sbjct: 568 GIRKASFSEVDEKYFFEIDEETKRLKDEIED 598


>gi|254415486|ref|ZP_05029246.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177667|gb|EDX72671.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 670

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 41/249 (16%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TPR +V     L          +      ++ D  CG+GGFL D      +  + 
Sbjct: 114 GGRYPTPRHIVKFMQRLA---------QLEPNNHSVADLACGSGGFLLD-----REITNP 159

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   G ++ PE   +  A   +        R ++ N  Q      + FT K F 
Sbjct: 160 SSSEVTI---GIDISPEWKRLAWANTRLHHF---TPRLINGNALQ--VCGSEEFTKKTFD 211

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L NPPFG+K   D+   E           G  +   S+ ++  L              
Sbjct: 212 RILINPPFGEKI--DEKLAE--------NTLGYKVSSRSETALTALAL------QKLAPA 255

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSN 412
           G+AAI++ S  LF     + E ++RR L+ +  +EA+++LP D L   + + T+L ++S 
Sbjct: 256 GKAAILVPSGLLF--SNNTSERKLRRQLIFDYKLEAVISLPKDALQPYSPLQTHLLLVSK 313

Query: 413 RKTEERRGK 421
                +  K
Sbjct: 314 PDNFAQPSK 322


>gi|257785025|ref|YP_003180242.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
 gi|257473532|gb|ACV51651.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
          Length = 796

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/396 (14%), Positives = 105/396 (26%), Gaps = 104/396 (26%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIY 159
           +SY+       K  F+D         ++         +    +   +     D V    +
Sbjct: 246 QSYMQRLFSTTKEEFKDDHLFEDSDEIK--IRNNSFIQILGKLENFNLSDTQDDVKGIAF 303

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +    +        F TPR +V   T ++           P     + DPTCG+GGF
Sbjct: 304 EQFLG---TTFRGELGQFFTPRTIVDFMTEII----------DPQEGEIICDPTCGSGGF 350

Query: 220 LTDAMNHVADC------------------------------------------------- 230
           L  A  +V +                                                  
Sbjct: 351 LIKAFEYVREKIEADIREQKEKLRSEFESDDFESKPEDEQIRVTVLIDKMQAVLNAELDT 410

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               S  +       +G +  P         M++                    L+ +  
Sbjct: 411 SATNSRMQQLSRNCIYGTDANPRMARTSKMNMIM------HGDGHGGVHHHDGLLNVNGI 464

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPG---------------- 327
             +RF   L+NPPFG+  ++ +   + +    E      R   G                
Sbjct: 465 FEERFDVILTNPPFGQNVDRSQTITDADRFTDEEMKKKYRNKYGEAYDEALKQVDDHIGK 524

Query: 328 ----LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               L  +   S L  +    +       GGR  +VL    L         + +R +   
Sbjct: 525 PLLSLYDLGSTSTLTEVLFMERCLRLLKKGGRMGMVLPEGVL----NNKNLAAVREYFEG 580

Query: 384 NDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEE 417
              +  I ++P D+F      +   L  +     EE
Sbjct: 581 KAKLILICSIPQDVFIAAGATVKPSLVFMRKFTAEE 616


>gi|163785235|ref|ZP_02179907.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879497|gb|EDP73329.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 162

 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 + E +IR+  +E DLIEA++ LP +LF+ T     + +L+  K  + + ++ LI
Sbjct: 5   SGAEGSNRERDIRKKFVEQDLIEAVILLPENLFYNTTAPGVIIVLNKNK--KHKEEILLI 62

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPL 484
           NA++ +   R +     I+      +I ++Y + +   KFS+++           +  P 
Sbjct: 63  NASEKYEKGRPK----NILTG--IDEIAEVYHNWKEVEKFSKIITKEEAQKNDYNLS-PS 115

Query: 485 RMSFILDKTGLARLEADITWRK 506
           R   I ++  +  L+  +   K
Sbjct: 116 RYITIAEEEEIIPLDDAVVLVK 137


>gi|217031816|ref|ZP_03437319.1| hypothetical protein HPB128_199g24 [Helicobacter pylori B128]
 gi|298735558|ref|YP_003728079.1| hypothetical protein HPB8_58 [Helicobacter pylori B8]
 gi|216946468|gb|EEC25070.1| hypothetical protein HPB128_199g24 [Helicobacter pylori B128]
 gi|298354743|emb|CBI65615.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 679

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 128/406 (31%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKCMKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +         SK ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRDDGSSLIIKGNTFE-----TSKKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E       +FG             L H+          G   AI++ 
Sbjct: 484 S-----------YEENGMPFIKFG-------------LEHM--------QKGALGAIIIQ 511

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
            S   +G+A     EI    L+   + A V +PTDLF     + T ++I    +  +   
Sbjct: 512 DSA-GSGQALKSNVEI----LKKHSLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 567 PVKFIDFRNDGFKSTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|317181155|dbj|BAJ58941.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32]
          Length = 679

 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 121/406 (29%), Gaps = 72/406 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 260 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKNSSITKQIFT 319

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 320 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 376

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILV 241
                          + D   G+ GFL  +M             +        K      
Sbjct: 377 --------GVNAKSFVMDLATGSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKEAKTTQ 428

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL  E  ++    M++R   S      +          K ++   + +  L NPPF
Sbjct: 429 LLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPF 483

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             +                                        KL L     G    ++ 
Sbjct: 484 SYEENGMP---------------------------------FIKLGLEYMQKGTLGAIII 510

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRG 420
                +G+A     EI    L+   + A + +PTDLF     + T ++I    +  +   
Sbjct: 511 QDSAGSGQALKSNVEI----LKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEK 566

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            V+ I+  +        G         +  +I+ IY +  N K S+
Sbjct: 567 PVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|326441402|ref|ZP_08216136.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score = 90.6 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           D + + + G +L  D F G      L++PPF ++    ++            R+  GLP 
Sbjct: 254 DAAVSARSGDSLRADAFPGAEADAVLTHPPFNERHWGHEELAYD-------PRWEYGLPA 306

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            ++  + ++ H   +L      GG A +++  +             +R  LL    + A+
Sbjct: 307 RTESELAWVQHALARLRP----GGTAVVLMPPAAASRRSG----RRVRAGLLRRGALRAV 358

Query: 391 VALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430
           VALP        I  +LW+L   +        V  ++  +L
Sbjct: 359 VALPAGAAPPYGIPLHLWVLRRPEPGRTPAPDVLFVDTAEL 399


>gi|294813056|ref|ZP_06771699.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325655|gb|EFG07298.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 795

 Score = 90.6 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           D + + + G +L  D F G      L++PPF ++    ++            R+  GLP 
Sbjct: 319 DAAVSARSGDSLRADAFPGAEADAVLTHPPFNERHWGHEELAYD-------PRWEYGLPA 371

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            ++  + ++ H   +L      GG A +++  +             +R  LL    + A+
Sbjct: 372 RTESELAWVQHALARLRP----GGTAVVLMPPAAASRRSG----RRVRAGLLRRGALRAV 423

Query: 391 VALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430
           VALP        I  +LW+L   +        V  ++  +L
Sbjct: 424 VALPAGAAPPYGIPLHLWVLRRPEPGRTPAPDVLFVDTAEL 464


>gi|289765284|ref|ZP_06524662.1| type I restriction-modification system [Fusobacterium sp. D11]
 gi|289716839|gb|EFD80851.1| type I restriction-modification system [Fusobacterium sp. D11]
          Length = 601

 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 34/320 (10%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
              ++N ++I E+ D +S   + E   +     K    I    + +P  +   +YE L  
Sbjct: 69  RENTENNESIKEEIDKNSNKKKNESTLMKIH--KAIEEIN-STNDLPIDLFGEVYECLAS 125

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   +      +F T R ++     +     D         I    DP CGTGGFLT++ 
Sbjct: 126 K---KTKSMLGEFFTRRHIIKAIVRMFFSSKDIKDIIKYKKIIV--DPACGTGGFLTESF 180

Query: 225 NHVADCGSHHKIPPILVPH--------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            ++ +     K                G ++   +       M++           +   
Sbjct: 181 KYIKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMILTGDGFSDIDRYNTLQ 240

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                  ++    K   Y L+N P+G+      +    E              K     +
Sbjct: 241 ANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFIKN---------NKNKRLEL 291

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++ +   L+     GGRA+I+L    L      +     R +LL    IE I++LP  
Sbjct: 292 NFVLKIIEMLK----EGGRASIILPEGLLEAPTLSN----FRDYLLRQCKIETIISLPKF 343

Query: 397 LFF-RTNIATYLWILSNRKT 415
            F   T   TY+  L  R+ 
Sbjct: 344 AFAPYTKWKTYVIFLEKREK 363


>gi|218439051|ref|YP_002377380.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218171779|gb|ACK70512.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 711

 Score = 90.2 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 130/361 (36%), Gaps = 61/361 (16%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +E   ++      + S  ++  +G T T N +  ++                 S  + ++
Sbjct: 27  IEYLARLLLEKVLDISIDTMVLIGRTPTNNKVMGFLTDHPPQKI-------LPSEPSSID 79

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL---IRR-------------FGSEVSE 172
              +      + S +  HP  +P+  + +I E+L   I +             F     +
Sbjct: 80  IPHIDTTNIVSMSTLPRHPQDIPNLNLQSIQENLDNAINQAENIPNLYNHHILFRLSTRQ 139

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               + TPR +      L                 +L D  CG+GGFL +    V +   
Sbjct: 140 SGGRYPTPRHITKFIYNLA----------QVKPDHSLADFACGSGGFLVERELTVDNYHK 189

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G ++ PE   +    + +R+L    R   + +++  + L         F
Sbjct: 190 TW---------GIDISPEWIRLAYTNIALRKLPPLLRSGNALDVETFNKLKFKQKEYTIF 240

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L NPPFG          EK      +G+ G  +   S+ ++  L             
Sbjct: 241 DRILMNPPFG----------EKIDTKLAVGKLGKTVGSRSETALTTLA------IQQLAE 284

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILS 411
            G AAI++ S  LF+      E E+R+ L++   ++A++ LP D L   +++ +++ ++ 
Sbjct: 285 DGIAAILVPSGLLFSNS--KAEKELRQTLIDEYHLKAVLTLPKDALQPYSSLQSHILLIH 342

Query: 412 N 412
            
Sbjct: 343 K 343


>gi|224371956|ref|YP_002606122.1| HsdM3 [Desulfobacterium autotrophicum HRM2]
 gi|223694675|gb|ACN17958.1| HsdM3 [Desulfobacterium autotrophicum HRM2]
          Length = 672

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 118/395 (29%), Gaps = 97/395 (24%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD---------PDDAL 198
             V   V+  +++  +R        G   ++TP  V      +                 
Sbjct: 293 KDVSGDVLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLTMAFHDIVQDAETVGQLTT 351

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----------KIPPILVPHGQEL 247
              +   +    DPTCG+ GF + A++H+                           G + 
Sbjct: 352 RDANNRPVFRFCDPTCGSYGFGSVALSHLKAALDDIPMADSARDALFNDMMEYSFVGADS 411

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG----- 302
            P    +    M ++        + +K     ++L+             +NPPFG     
Sbjct: 412 APRMVMLARVNMALQG------ANKAKIFYTDNSLTTPSLQPNSVDLICTNPPFGTPKFG 465

Query: 303 -------KKWEKDKDAVEKEHKNG----------------------------ELGRFGPG 327
                  + ++KD D +    ++                               G + P 
Sbjct: 466 KGKATQKQHYQKDMDLILDNFRSDLINVSTTKADKMECRPTTGGLALGSKPNNKGEWKPV 525

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE---- 383
                D ++LF+      L+     GGR  IVL    L      S +  +R +++     
Sbjct: 526 KGGSIDPAVLFIDRCLQLLKP----GGRLLIVLPDGVL----CNSSDRYVREYMMGTKDA 577

Query: 384 -------NDLIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLI 425
                    +I+A+V+LP D F    T   T +  L  RK           E +  V + 
Sbjct: 578 DGQFVGGKAIIKAVVSLPADTFKLSGTGAKTSVLYLQKRKASPDHPEQFLPEPQTDVFMA 637

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            A  L   ++N  +       +   +I+  Y   E
Sbjct: 638 VAETLGYVVKNNIEDYDSGVPNDLDKIVGAYRRAE 672


>gi|326777761|ref|ZP_08237026.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658094|gb|EGE42940.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 552

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 93/271 (34%), Gaps = 49/271 (18%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+ RF         D +T   +V   +                    + DP CG G  
Sbjct: 129 EQLVERFRDSSRRVGSDQVTSLRLVKAVSHFAGPV---------PAGSVVLDPACGIGTL 179

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                   LV  GQ+++P    +  A   +              I+ G
Sbjct: 180 LLSV-----------GPTEGLVRRGQDIDPAAAGLAGARAELAG-------QQDTVIETG 221

Query: 280 STLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            +L  D +   R    L +PP  G  W +++  ++         R+  G P  ++G + +
Sbjct: 222 DSLRHDHWPDLRADLVLCDPPTAGPDWGREELLLD--------SRWELGTPSKAEGDLAW 273

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H           GGR   V+ +S  +          IR  ++   ++  +VALP  + 
Sbjct: 274 LQHCYAH----TAPGGRVVAVMPASVAYRKAG----RRIRAEMVRRGILTEVVALPPGMV 325

Query: 399 FRTNIATYLWILSNRKTEERRG---KVQLIN 426
                  +LWIL  R+  +  G    V++++
Sbjct: 326 ASHAQPVHLWIL--RRPADASGGSESVRMVD 354


>gi|3511126|gb|AAC33717.1| HaeIV restriction/modification system [Haemophilus aegyptius ATCC
           11116]
          Length = 953

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 106/336 (31%), Gaps = 20/336 (5%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           + L       T+  +  Y       +   F   D  +     + A +L +I +    I+L
Sbjct: 338 FHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEIVQMLQDIKL 397

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +    + + +++E  + +    V +    F TP  +V    + L        K +P  
Sbjct: 398 KSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQVLQNKNAP-- 452

Query: 206 IRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + D  CG G FLT+  + +         +        +G E E     V      + 
Sbjct: 453 --KVIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSKVAKVSAFMY 510

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               D    +  +    +           F   ++NPP+  K        E + K     
Sbjct: 511 G--QDEMNIIYADALAQNQEQGKALQDGSFSLLVANPPYSVKGFLSTIFDEDKAKFTLYE 568

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S            K +   +  G A IVL SS L N   G+   + R  LL
Sbjct: 569 NIDNEETFNS-----IETFFIEKAKQLLHAEGIAVIVLPSSILTN---GNIYIKCREILL 620

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++  + AI    +  F +T   T    L  ++    
Sbjct: 621 QHFDLVAIAEFGSGTFSKTGTNTATLFLRRKQATPN 656


>gi|57168922|ref|ZP_00368052.1| type I restriction modification enzyme [Campylobacter coli RM2228]
 gi|57019758|gb|EAL56444.1| type I restriction modification enzyme [Campylobacter coli RM2228]
          Length = 1343

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 87/536 (16%), Positives = 177/536 (33%), Gaps = 42/536 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKNSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENGKF-SRM 467
           ++   +   + + +   I       NE   +  +N   D R+   ++Y +  NG   S++
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNESFYQNYLNTYCDFRKFDKELYSNFLNGNLDSKL 713

Query: 468 LDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +   F      +R+    + L+ S I  ++   +   D  +   +   +   L      
Sbjct: 714 AELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLS 773

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           + Q      + S +KE  K    +    K  +               R +P  +  
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNETK 829


>gi|319775884|ref|YP_004138372.1| HaeIV restriction/modification system [Haemophilus influenzae
           F3047]
 gi|317450475|emb|CBY86692.1| HaeIV restriction/modification system [Haemophilus influenzae
           F3047]
          Length = 1062

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 107/336 (31%), Gaps = 20/336 (5%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           + L       T+  +  Y       +   F   D  +     + A +L +I +    I+L
Sbjct: 338 FHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEIVQMLQDIKL 397

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +    + + +++E  + +    V +    F TP  +V    + L        K +P  
Sbjct: 398 KSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQVLQNKNAP-- 452

Query: 206 IRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + D  CG G FLT+  + +         +        +G E E     V      + 
Sbjct: 453 --KVIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSKVAKVSAFMY 510

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               D    +  +    +           F   ++NPP+  K      + E + K     
Sbjct: 511 G--QDEMNIIYADALAQNQEQGKALQDGSFSLLVANPPYSVKGFLSTISDEDKAKFTLYE 568

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S            K +   +  G A IVL SS L N   G+   + R  LL
Sbjct: 569 NIDNEETFNS-----IETFFIEKAKQLLHAEGIAVIVLPSSILTN---GNIYIKCREILL 620

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++  + AI    +  F +T   T    L  ++    
Sbjct: 621 QHFDLVAIAEFGSGTFSKTGTNTATLFLRRKQATPN 656


>gi|329123732|ref|ZP_08252292.1| type II restriction-modification enzyme [Haemophilus aegyptius ATCC
           11116]
 gi|327469931|gb|EGF15396.1| type II restriction-modification enzyme [Haemophilus aegyptius ATCC
           11116]
          Length = 911

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 107/336 (31%), Gaps = 20/336 (5%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           + L       T+  +  Y       +   F   D  +     + A +L +I +    I+L
Sbjct: 338 FHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEIVQMLQDIKL 397

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +    + + +++E  + +    V +    F TP  +V    + L        K +P  
Sbjct: 398 KSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQVLQNKNAP-- 452

Query: 206 IRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + D  CG G FLT+  + +         +        +G E E     V      + 
Sbjct: 453 --KVIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSKVAKVSAFMY 510

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               D    +  +    +           F   ++NPP+  K      + E + K     
Sbjct: 511 G--QDEMNIIYADALAQNQEQGKALQDGSFSLLVANPPYSVKGFLSTISDEDKAKFTLYE 568

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S            K +   +  G A IVL SS L N   G+   + R  LL
Sbjct: 569 NIDNEETFNS-----IETFFIEKAKQLLHAEGIAVIVLPSSILTN---GNIYIKCREILL 620

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++  + AI    +  F +T   T    L  ++    
Sbjct: 621 QHFDLVAIAEFGSGTFSKTGTNTATLFLRRKQATPN 656


>gi|225568452|ref|ZP_03777477.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM
           15053]
 gi|225162680|gb|EEG75299.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM
           15053]
          Length = 605

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 100/306 (32%), Gaps = 41/306 (13%)

Query: 166 FGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F   V +       TP  +      +      ++          + DP CG+G FL  AM
Sbjct: 268 FNKYVGKSDKNQAFTPDHITDFMAKITGVNKHSV----------VLDPCCGSGSFLVRAM 317

Query: 225 NHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               D     +  +       +G E +   + +    MLI         D + NI+QGS 
Sbjct: 318 TQALDDCATAAEQETIKRNQIYGIEFDENVYGLATTNMLIH-------SDGNSNIRQGSC 370

Query: 282 LS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               D     + +  L NPP+  +          EH      +     P       L+ +
Sbjct: 371 FKLSDWIKEAKPNVILMNPPYNGQRIH-----LPEHYVKTWTKNKKEDPSKG----LYFV 421

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-SEIRRWLLENDLIEAIVALPTDLFF 399
                     N   + A++L    +      SGE + ++  +L+ + ++A+  LP ++F+
Sbjct: 422 KYIADTLNSINQQAKLAVLLP---VACAIGTSGEIARLKSEILKENTLDAVFTLPNEIFY 478

Query: 400 -RTNIATYLWILS-NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
              + +    +     K ++        +    +       KK+ +   +Q   +     
Sbjct: 479 PGASASACCMVFKIGTKHKDMTNP----DTYFGYCKEDGFKKKKNLGRVEQVDTVTGKSR 534

Query: 458 SRENGK 463
             E  K
Sbjct: 535 WVEIEK 540


>gi|282866313|ref|ZP_06275359.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282558899|gb|EFB64455.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 717

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           RT+ DP  GTG  L               +      + QE +    A+    + +    +
Sbjct: 215 RTVLDPAAGTGALL-------------RAVGGPAALYAQEADAGLAALTALRLALHSENA 261

Query: 267 DPRRDLSK------NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 S        ++ G TL  D F        L +PPF ++    ++          
Sbjct: 262 SGTPSSSGAARGTITVRTGDTLRADAFPRLAADAVLCHPPFNERNWGHEELAYD------ 315

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R+  G P  ++  + ++ H  ++L      GG A +++  +             +R  
Sbjct: 316 -PRWEYGFPARTESELAWVQHALSRLR----EGGTAVLLMPPAAASRRSG----RRVRAD 366

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           LL    + A++ALP        I  +LW+L    T  R     L+
Sbjct: 367 LLRRGALRAVIALPAGAAPPYGIPLHLWVLRKPGTGRRPAPELLV 411


>gi|298375963|ref|ZP_06985919.1| N-6 DNA methylase [Bacteroides sp. 3_1_19]
 gi|298267000|gb|EFI08657.1| N-6 DNA methylase [Bacteroides sp. 3_1_19]
          Length = 837

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 113/382 (29%), Gaps = 105/382 (27%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           F++  KA   D  F S      +      I +  S +EL+     D +    +E  + + 
Sbjct: 219 FNEVKKAYSTDGLFDSEDKIRIRRESFLLILEELSSVELY--DTSDDIKGIAFELFLGK- 275

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                     F TPR +V+    +L          +      + DP CG+GGFL  A  H
Sbjct: 276 --TFRGELGQFFTPRTIVNYMVEVL----------NVKEGDKVCDPCCGSGGFLIKAFEH 323

Query: 227 VA---------------------DCGSHHKIPPIL------------------VPHGQEL 247
           V                      D    +KI  +L                     G + 
Sbjct: 324 VQNQIDQDIHKQITILMDNQSLSDTEKQYKINTLLRECDKTKEGSRYHKLCHDYFFGVDA 383

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
                      M++                    ++        F   L NPPFG   EK
Sbjct: 384 NARMARTSKMNMIMHG------DGHVGVYLHDGLINVGGVYDNNFDVILINPPFGAHVEK 437

Query: 308 D------KDAVEKEH---------------------------KNGELGRFGPGLPKISD- 333
           D          ++E                            K+ ++G+    L +I++ 
Sbjct: 438 DMRITSSDIPTDRERALCEELFGSEYISKVYTPIKEYAQEIGKDKKIGKRILELYQINNN 497

Query: 334 -GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LF+    N L+     G RA IVL    L           +R+++     I  I +
Sbjct: 498 STEILFIERCINLLK----PGKRAGIVLPEGVL----DNPALDRVRKFIESRAKILNITS 549

Query: 393 LPTDLFFRTN--IATYLWILSN 412
           +P D+F  +   I   L  +  
Sbjct: 550 IPADVFLSSGANIKPSLVFIEK 571


>gi|271963120|ref|YP_003337316.1| type I restriction-modification system methyltransferase
           subunit-like protein [Streptosporangium roseum DSM
           43021]
 gi|270506295|gb|ACZ84573.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Streptosporangium roseum DSM
           43021]
          Length = 636

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 55/271 (20%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L  R+    S          DV  L + L   PD    K       T+ DP CG G 
Sbjct: 154 FEFLCERYVEAHSRQLSVTRD--DVAALMSRL-TGPDRGRGKG------TVLDPACGVGT 204

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A   +                GQE+      +    +L+R          +  +  
Sbjct: 205 LLLHADASL----------------GQEINETNALLTAVRVLLRG--------ATGRVVA 240

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L +D   G+     + +PPF ++    ++            R+  GLP   +  + +
Sbjct: 241 GDSLREDGLAGELADAVVCDPPFNERAWGYEELTGD-------PRWEYGLPPRGESELAW 293

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H    +      GG  AI++ ++             IR  LL    + A+V L     
Sbjct: 294 VQHCLAHVRP----GGLVAILMPAAAASRRPG----KRIRGNLLRTGALRAVVMLGPG-- 343

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATD 429
                   LWIL          ++ +++AT+
Sbjct: 344 -----GPDLWILRRPDGGRPPSQLLMVDATE 369


>gi|300934054|ref|ZP_07149310.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 211

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 66/220 (30%), Gaps = 19/220 (8%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                A +   +W  A++L  + K     +   +L    L   E   E  R  V  K  A
Sbjct: 2   KATDLAKVRATLWSAADELRANSKLTPVQYRDPVLGLVFLAYAENRFETVRGEVEAKSSA 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFED 117
              + +        A    Y   E  LS L       +     +  I +  +       +
Sbjct: 62  RNPATVAD----YKAKSVLYVPDESRLSHLVGLPEGADIGKATDEAIKAIEE------AN 111

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +    + R  +      + +        P  +       IYE  +  F ++  +G  ++
Sbjct: 112 PELKDVLPRGYQKLERSTLIELLRLFAPLPTQLAGDAFGFIYEDFLSNFAAQEGKGGGEY 171

Query: 178 MTPRDVVHLATALLLDPDDALFK---ESPGMIRTLYDPTC 214
            TP  +V L   +L      +F+         R  YD   
Sbjct: 172 FTPYSIVRLIVEILQPFRGRVFETFMSQRIQTRANYDLAA 211


>gi|319896580|ref|YP_004134773.1| haeiv restriction/modification system [Haemophilus influenzae
           F3031]
 gi|317432082|emb|CBY80432.1| HaeIV restriction/modification system [Haemophilus influenzae
           F3031]
          Length = 1062

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 107/336 (31%), Gaps = 20/336 (5%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           + L       T+  +  Y       +   F   D  +     + A +L +I +    I+L
Sbjct: 338 FHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEIVQMLQDIKL 397

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +    + + +++E  + +    V +    F TP  +V    + L        K +P  
Sbjct: 398 KSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQVLQNKNAP-- 452

Query: 206 IRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + D  CG G FLT+  + +         +        +G E E     V      + 
Sbjct: 453 --KVIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSKVAKVSAFMY 510

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               D    +  +    +           F   ++NPP+  K      + E + K     
Sbjct: 511 G--QDEMNIIYADALAQNQEQGKALQDGSFSLLVANPPYSVKGFLSTISDEDKAKFTLYE 568

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S            K +   +  G A IVL SS L N   G+   + R  LL
Sbjct: 569 NIDNEETFNS-----IETFFIEKAKQLLHAEGIAVIVLPSSILTN---GNIYIKCREILL 620

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++  + AI    +  F +T   T    L  ++    
Sbjct: 621 QHFDLVAIAEFGSGTFSKTGTNTATLFLRRKQATPN 656


>gi|217033897|ref|ZP_03439321.1| hypothetical protein HP9810_870g29 [Helicobacter pylori 98-10]
 gi|216943660|gb|EEC23105.1| hypothetical protein HP9810_870g29 [Helicobacter pylori 98-10]
          Length = 339

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 100/325 (30%), Gaps = 66/325 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  +Y   + ++     +     +TP  V  + + LL                 + D   
Sbjct: 1   MGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL----------GVNAKSFVMDLAT 49

Query: 215 GTGGFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           G+ GFL  +M             +        K        G EL  E  ++    M++R
Sbjct: 50  GSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILR 109

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              S      +          K ++   + +  L NPPF             E       
Sbjct: 110 GDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPFS-----------YEENGMPFI 153

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +FG    +                      G   AI++  S   +G+A     EI    L
Sbjct: 154 KFGLEYMQK---------------------GALGAIIIQDSA-GSGQALKSNVEI----L 187

Query: 383 ENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +   + A + +PTDLF     + T ++I    +  +    V+ I+  +        G   
Sbjct: 188 KKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNE 247

Query: 442 RIINDDQRRQILDIYVSRENGKFSR 466
                 +  +I+ IY +  N K S+
Sbjct: 248 TSNPTKRYEEIIKIYKAGLNAKVSK 272


>gi|325848783|ref|ZP_08170293.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480427|gb|EGC83489.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 703

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 133/418 (31%), Gaps = 74/418 (17%)

Query: 38  FTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
             L + L                +  +E+Y     S  D +   K               
Sbjct: 199 LFLFKYLSDIGVLSGDSSFFYIANMYKEEYKKIDPSINDAKVLGKYLDGPRETMKTLFPE 258

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147
               T+  N    ++     N     ++ D  F   +   E          + S      
Sbjct: 259 GEDGTSIINGQVFHVKKDEYNQYISLDNTDKIFKEVVLEFENYEKENGKFIHIST----- 313

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                   S ++E  ++   S+       F TP  +V+    ++                
Sbjct: 314 -----DFKSKLFETFMKH--SDEKSNMGQFFTPLKIVNEMIEMV----------DIYEGM 356

Query: 208 TLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQ-----ELEPETHAVCVAGM 259
           ++ DP CG G F+ +A+             K+   +   G      E +  T  +  A M
Sbjct: 357 SICDPACGVGKFILEAIEDKISEYFTYKKKKLEKRIEIIGYDKMMSERDDLTIILAKANM 416

Query: 260 L------------IRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCLSNPPFGK 303
           L            ++ +++  +  L+ +     T+   L  G+    ++   L+NPP+ +
Sbjct: 417 LIYFSELFKKNNSLQDVKTISQSLLNDSYYLHQTMLGTLGVGELEENKYDLILANPPYYQ 476

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                K  +E     G     G G+        LFL  +   L+     GG A +VL   
Sbjct: 477 S----KVMMEAAKDTGYYDLNGAGVES------LFLEWILKSLKP----GGTANVVLPDG 522

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              N       S+++ ++L N  IEAI++LP   FF T   TY+  +      E+   
Sbjct: 523 IFSNYAN----SKLKEYMLNNFFIEAIISLPVGAFFNTPKKTYILTVRKATEREKEDN 576


>gi|297521619|ref|ZP_06940005.1| DNA methylase M [Escherichia coli OP50]
          Length = 197

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 21/169 (12%)

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR- 413
           RAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +   
Sbjct: 1   RAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 57

Query: 414 --KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGKF 464
                + +     +   DL T++ + G KR    D+  +    +Y         R  G++
Sbjct: 58  VANPHQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRSEGEW 116

Query: 465 S------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-DITWRK 506
           S       + D          +       F  +     + ++ DI+W K
Sbjct: 117 SFNAEETEVADSEENKNTDQHLATSRWRKFTREWIRTTKSDSLDISWLK 165


>gi|284926281|gb|ADC28633.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 1364

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 86/536 (16%), Positives = 178/536 (33%), Gaps = 42/536 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINMETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENGKF-SRM 467
           ++   +   + + +   I       NE   +  ++   D R+   ++Y +  NG   S++
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKL 713

Query: 468 LDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +   F      +R+    + L+ S I  ++   +   D  +   +   +   L      
Sbjct: 714 AELEAFKDYRNAFRQTSDYKRLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLS 773

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           + Q      + S +KE  K    +    K  +     +         R +P  +  
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELYNPYLSPLFERDNPQNETK 829


>gi|322376403|ref|ZP_08050896.1| type II restriction modification enzyme methyltransferase
           [Streptococcus sp. M334]
 gi|321282210|gb|EFX59217.1| type II restriction modification enzyme methyltransferase
           [Streptococcus sp. M334]
          Length = 675

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 124/406 (30%), Gaps = 77/406 (18%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F  I+     +   +M  +Y   + ++     +     +TP  V  +   +L    ++
Sbjct: 324 NIFKSIDGFGGHI--DIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQILGITSES 380

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQ 245
                      + D   G+ GFL  AM  + D                          G 
Sbjct: 381 ----------KVMDLATGSAGFLISAMELMIDHANASFGKGTSRANEEIANLKKDNLLGI 430

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E + +    M++R   S      S   +      + LF   + +  L NPPF  + 
Sbjct: 431 ELNAEMYTLATTNMILRGDGSSRIEKGSAFNR-----PESLFMDFKANRVLLNPPFSYEE 485

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                                         + F+ +  +K+E     GG  AI++  S  
Sbjct: 486 NG----------------------------LPFIAYGLDKMEC----GGLGAIIIQDSAG 513

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
                 +      + +L+   + A + +P DLF     + T ++I    +  +    V+ 
Sbjct: 514 SGKAIKTA-----QAILKKHTLLASIKMPVDLFIPMAGVQTSIYIFKAHEAHDYDQTVKF 568

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR---------MLDYRTFGY 475
           I+  +        G         + + ++ IY + +  + S+         + D+ T   
Sbjct: 569 IDFRNDGFKRAKRGISEVDNPIQRYQDVIKIYKAGKRAEVSKELWDLDAIFIEDFITDKG 628

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
                 +   +          +  AD    ++  L +S   D  K 
Sbjct: 629 NDWNFEQHQNIDTKPTLDDFKKTVADYLAWEVEQLLKSKGEDSSKK 674


>gi|315619743|gb|EFV00263.1| N-6 DNA Methylase family protein [Escherichia coli 3431]
          Length = 768

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 141/433 (32%), Gaps = 79/433 (18%)

Query: 129 KAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++ L     K    + E +   +       ++  + R  G    +  +  +TP  V  L 
Sbjct: 400 ESQLKRVFVKVVDDLGEYYKIGLTTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLL 459

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPPILVPH--- 243
             L     D+           ++D   G+ G L  AMN +  D   +   P  L      
Sbjct: 460 ARLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDARENIHSPNELQLKEAQ 509

Query: 244 -------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--HY 294
                  G E+    + + +  M++   +         ++           TG++F    
Sbjct: 510 IKAEQLLGLEVLSSIYMLAILNMILMG-DGSSNILNKDSLADFDGKYGFGKTGEKFPADA 568

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+  K                               M+F+    + +       G
Sbjct: 569 FILNPPYSAKGNG----------------------------MIFVQKALSMM-----DKG 595

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
            AA+++ SS           +E  + +L+ + + A + +P DLF   +++ TY+++   +
Sbjct: 596 YAAVIIQSSA-----GTGKATEYNKKILKENTLLASIKMPADLFIGKSSVQTYIYVFQVK 650

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +  V+ I+ ++   +  N  K R  + D  R +           ++  ++D   F
Sbjct: 651 IPHNAKQAVKFIDFSNDGYARSNRKKARNNLVDADRAK----------ERYQEVVDLVHF 700

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           G   + +             G    ++   W +  P+     L+  K  +     +  ++
Sbjct: 701 GKGCLNIFTEDEYF-----EGTIDPDSGEDWNQTRPVDARPTLEDFKKTVGDYLAWEVSQ 755

Query: 534 SFVKESIKSNEAK 546
              K+   +   K
Sbjct: 756 LLKKQGENNFAGK 768


>gi|293363450|ref|ZP_06610207.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
 gi|292552970|gb|EFF41723.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
          Length = 108

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  +  E  +   +F TP++V  L   L L   +   K     + T+YDP CG+G  L  
Sbjct: 1   MAMYAGEAGKSGGEFFTPQEVSELLARLTLIDFNHPNKNDKIKVSTVYDPCCGSGSLLLK 60

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
               +               +GQE+   T+ +    M +  +        +
Sbjct: 61  FAKILGKENVTD------SFNGQEINHTTYNLARINMFLHDINFHKFHIYN 105


>gi|86151110|ref|ZP_01069326.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842280|gb|EAQ59526.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 1279

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/536 (15%), Positives = 176/536 (32%), Gaps = 42/536 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L  S L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPGSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENGKF-SRM 467
           ++   +   + + +   I       NE   +  ++   D R+   ++Y +  NG   S++
Sbjct: 654 KQENHLISQDYSLIKERIETENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKL 713

Query: 468 LDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +   F      +R+    + L+ S I  ++   +   D  +   +   +   L      
Sbjct: 714 AELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLS 773

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           + Q      + S +KE  K    +    K  +               R +P  +  
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNETK 829


>gi|88606674|dbj|BAE79804.1| HP1472-M of type II restriction and modification system
           [Helicobacter pylori]
          Length = 679

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 104/337 (30%), Gaps = 66/337 (19%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I    +T    +M  +Y   + ++     +     +TP  V  + + LL           
Sbjct: 329 INESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL----------G 377

Query: 203 PGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPE 250
                 + D   G+ GFL  +M             +        K        G EL  E
Sbjct: 378 VNAKSFVMDLATGSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAE 437

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
             ++    M++R   S      +          K ++   + +  L NPPF         
Sbjct: 438 MFSLATTNMILRGDGSSLIIKGNTFETN-----KKIYEDFKPNILLLNPPFI-------- 484

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               E       +FG    +                      G   AI++  S   +G+A
Sbjct: 485 ---YEENGMPFIKFGLEYMQK---------------------GALGAIIIQDSA-GSGQA 519

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGKVQLINATD 429
                EI    L+   + A + +PTDLF     + T ++I    +  +    V+ I+  +
Sbjct: 520 LKSNVEI----LKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRN 575

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
                   G         +  +I+ IY +  N K S+
Sbjct: 576 DGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|304389844|ref|ZP_07371803.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327020|gb|EFL94259.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 283

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 106/294 (36%), Gaps = 44/294 (14%)

Query: 220 LTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           +  AM+ +   AD     K       HG EL+    AV  A M++R       +D + N+
Sbjct: 1   MISAMHRMLSMADTDVQRKSIKKKQLHGFELQSNMFAVAAANMILR-------KDGNSNL 53

Query: 277 QQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           +    L K+      K     L NPP+ +  + D +  E                     
Sbjct: 54  ECCDFLRKNTAQVQLKGATVGLMNPPYSQGTKADTEQHE--------------------- 92

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+ HL + L +    G RAA+++  S +        E + +  +L+   +E ++   
Sbjct: 93  -LSFIEHLLDSLTV----GARAAVIVPQSSM--TGKSKAEKQFKNSILDKHTLEGVITCN 145

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQIL 453
           ++ F+   +   + I +  +  ++R   + I+  D    +R            D+R+ +L
Sbjct: 146 SETFYGVGVNPVIAIFTANEKHDKRKVCKFIDFRDDGYEVRAHVGLLEGDSAKDKRQHLL 205

Query: 454 DIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           D++  R     KF  +      G   +            DK     +   +T+ 
Sbjct: 206 DVWFGRVEAPSKFC-VESTIEPGDEWLHSFYYFNDEIPTDKDFEKVIGDYLTFE 258


>gi|170079642|ref|YP_001736275.1| Type I restriction modification system, N-6 DNA methylase
           [Synechococcus sp. PCC 7002]
 gi|169887311|gb|ACB01020.1| Type I restriction modification system, N-6 DNA Methylase
           [Synechococcus sp. PCC 7002]
          Length = 1179

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 130/419 (31%), Gaps = 76/419 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           +  L      V E+      + +  E              E+  +    T  +N ++   
Sbjct: 203 DEVLANAGVDVFEEVFKLIFTKLYDEWLSGQGSNRNKRILEFRNTGQTETALKNKIQDLF 262

Query: 105 ASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
               +  + +F ED   + T + L       +  K F+            V+   +E+L+
Sbjct: 263 DRAKEKWEGVFSEDSKITLTPSHLSVCVRSLENVKLFNS--------NLDVIDEAFEYLV 314

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +           + TPR V+ +   +L          +P     + D   G+ GF    
Sbjct: 315 NQ---SSKGEKGQYFTPRYVIDMCVKML----------NPQEDEYMIDTAAGSSGFPVHT 361

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPE------------------------THAVCVAG- 258
           + HV       +          E +P                         T  +     
Sbjct: 362 IFHVWKQILEDEGIEASHLFTIEEKPHRCTEYVEKRVFAIDFDEKSVRVARTLNLIAGDG 421

Query: 259 ----MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------------FHYCLSNPPFG 302
               M +  L+ D   +++K      T +      K+            F   ++NPPF 
Sbjct: 422 QTNVMRLNTLDYDGWDEITKEESWNDTYNDGFKRLKKLRKNSNSYKEFEFDVLMANPPFA 481

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              ++ +   +        G++   + +     +LF+    + L+     GGR AIVL  
Sbjct: 482 GDIKEGRIIHKYALSKKPNGKWQTKVGR----DILFIERNLDFLKP----GGRMAIVLPQ 533

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRG 420
                    S + +IR ++ E   I A+V L  + F   T   T + ++     + R G
Sbjct: 534 GRF----NNSSDKQIREFIAERCRILAVVGLHGNTFKPHTGTKTSVLLVQKWNDDPRAG 588


>gi|297190750|ref|ZP_06908148.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150608|gb|EFH30686.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 742

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 110/332 (33%), Gaps = 55/332 (16%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            +  ++TP  +  L   LL          S      + DP CG+G  L  A  H A    
Sbjct: 174 ASGTYLTPEPLSDLMARLL---------PSSPPPSVVLDPACGSGSLLAAAARHGAKG-- 222

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     +GQ+  P         + +     D        ++ G +L  D F     
Sbjct: 223 ---------LYGQDSVPVQARRAAVRLRL-----DQAGAGEVGVRIGDSLRADAFPDLTA 268

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              LSNPP+G +    ++            R+  GLP  ++  + ++ H    L      
Sbjct: 269 DAVLSNPPYGVRDWGHEELAYD-------ARWAFGLPARAESELAWVQHALAHL----PP 317

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG A ++L  +             +R  L+ +  + A+ ALP       +I  ++W+L  
Sbjct: 318 GGHAVLLLPPATAARPSG----RRVRGELIRSGALRAVAALPAGAAAPLHIGLHIWVLQR 373

Query: 413 -RKTEERRGKVQLINA--TDLWTSIRNEGKKRRIINDDQRRQIL-------DIYVSRENG 462
            ++    R  V  ++   +   TS  +  + RR       +++        D + +R   
Sbjct: 374 PQQGAVDRTSVLFVDTASSREETSPPDAPRPRRKREALDWQEVSGKVLRHWDAFRARPES 433

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                        R + V+  L     +  + 
Sbjct: 434 -----FTDEPGVARAVPVVELLDELVDVTPSR 460


>gi|291515458|emb|CBK64668.1| Type I restriction-modification system methyltransferase subunit
           [Alistipes shahii WAL 8301]
          Length = 837

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 113/388 (29%), Gaps = 106/388 (27%)

Query: 102 SYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            YI    +  K  +  D  F S      +      I +  S +EL+     D +    +E
Sbjct: 213 DYIQHLFNEVKRTYSTDGLFDSEDKIRIRRESFLLILEELSSVELY--DTSDDIKGIAFE 270

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             + +           F TPR +V+    +L          +      + DP CG+GGFL
Sbjct: 271 LFLGK---TFRGELGQFFTPRTIVNYMVEVL----------NVKEGDKVCDPCCGSGGFL 317

Query: 221 TDAMNHVA---------------------DCGSHHKIPPILV------------------ 241
             A  HV                      D    +KI  +L                   
Sbjct: 318 IKAFEHVQNQIDQDIHKQITLLMDNLNLSDTEKQYKINTLLSECDKTKEGSRYHKLCHDY 377

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G +            M++                    ++        F   L NPPF
Sbjct: 378 FFGVDANVRMARTSKMNMIMHG------DGHVGVYLHDGLINVGGVYDNNFDVILINPPF 431

Query: 302 GKKWEKD------KDAVEKEH---------------------------KNGELGRFGPGL 328
           G   EKD          ++E                            K+ ++G+    L
Sbjct: 432 GAHVEKDMRITSSDIPTDRERALYEELFGSEYISKVYTPIKEYAQEIGKDKKIGKRILEL 491

Query: 329 PKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +I++    +LF+    N L+     G RA +VL    L           +R+++     
Sbjct: 492 YQINNNSTEILFIERCINLLK----PGKRAGVVLPEGVL----DNPALDRVRKFIESRVK 543

Query: 387 IEAIVALPTDLFFRTN--IATYLWILSN 412
           I  I ++P D+F  +   I   L  +  
Sbjct: 544 ILNITSIPADVFLSSGANIKPSLVFIEK 571


>gi|331088477|ref|ZP_08337391.1| hypothetical protein HMPREF1025_00974 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407817|gb|EGG87308.1| hypothetical protein HMPREF1025_00974 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1239

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 122/394 (30%), Gaps = 36/394 (9%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E  +  ++  +       +  E F     Y+     +Y+     +          I 
Sbjct: 301 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLRIL 360

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            F  N    F+D    +    L+   +L ++ + F    +       +++ +++E L+ +
Sbjct: 361 KFYTNNDFAFKDV--HNEQLFLQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLLSK 417

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAM 224
                 +    F TP  +       L  P + + K   G     + D  CG G FLT+  
Sbjct: 418 ---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTEGF 472

Query: 225 N----HVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                 V       ++          G E +     V    + +                
Sbjct: 473 EAVSACVKANDGLRELDRSFAENNIFGIEKDYRLARVSKISLFMHGAGEGNIIFGDGLEN 532

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                 K       F   ++NPP+     K    +    KN             S+   L
Sbjct: 533 YPDKNIKP----NTFDILVANPPYSVSAFKPHLKL----KNNSFSILDTISNNGSEIETL 584

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI--RRWLLENDLIEAIVALPT 395
           F+  ++  L+        AA++L SS L        ES I  R  +L+N  I AIV +  
Sbjct: 585 FVERISQLLKP----NAVAAVILPSSIL----NKENESFICARESILKNFKIRAIVLMGN 636

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL--INA 427
             F  T   T +  L       ++  +    I+A
Sbjct: 637 KTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDA 670


>gi|153815281|ref|ZP_01967949.1| hypothetical protein RUMTOR_01515 [Ruminococcus torques ATCC 27756]
 gi|145847343|gb|EDK24261.1| hypothetical protein RUMTOR_01515 [Ruminococcus torques ATCC 27756]
          Length = 1255

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 124/394 (31%), Gaps = 36/394 (9%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E  +  ++  +       +  E F     Y+     +Y+     +          I 
Sbjct: 317 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLRIL 376

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            F  N    F+D    +    L+   +L ++ + F    +       +++ +++E L+ +
Sbjct: 377 KFYTNNDFAFKDV--HNEQLFLQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLLSK 433

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAM 224
                 +    F TP  +       L  P + + K   G     + D  CG G FLT+  
Sbjct: 434 ---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTEGF 488

Query: 225 NHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             V+ C   +     L          G E +     V    + +                
Sbjct: 489 EAVSACVKANDSLRELDRSFAENNIFGIEKDYRLARVSKISLFMHGAGEGNIIFGDGLEN 548

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                 K       F   ++NPP+     K    +    KN             S+   L
Sbjct: 549 YPDKNIKP----NTFDILVANPPYSVSAFKPHLKL----KNNSFSILDTISNNGSEIETL 600

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI--RRWLLENDLIEAIVALPT 395
           F+  ++  L+        AA++L SS L        ES I  R  +L+N  I AIV +  
Sbjct: 601 FVERISQLLKP----NAVAAVILPSSIL----NKENESFICARESILKNFKIRAIVLMGN 652

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL--INA 427
             F  T   T +  L       ++  +    I+A
Sbjct: 653 KTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDA 686


>gi|208435340|ref|YP_002267006.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori G27]
 gi|208433269|gb|ACI28140.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori G27]
          Length = 679

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 105/337 (31%), Gaps = 66/337 (19%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I    +T    +M  +Y   + ++     +     +TP  V  + + LL           
Sbjct: 329 INESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL----------G 377

Query: 203 PGMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPE 250
                 + D   G+ GFL  +M             +        K        G EL  E
Sbjct: 378 VNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKNAKTTQLLGVELNAE 437

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
             ++    M++R   S      +         SK ++   + +  L N PF         
Sbjct: 438 MFSLATTNMILRGDGSSLIIKGNTFE-----TSKKIYEDFKPNILLLNSPFS-------- 484

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               E       +FG    +                      GG  AI++  S   +G+A
Sbjct: 485 ---YEENGMPFIKFGLERMQK---------------------GGLGAIIIQDSA-GSGQA 519

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGKVQLINATD 429
                EI    L+   + A + +PTDLF     + T ++I    +  +    V+ I+  +
Sbjct: 520 LKSNVEI----LKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRN 575

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
                   G         +  +I+ IY +  N K S+
Sbjct: 576 DGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSK 612


>gi|317501643|ref|ZP_07959834.1| hypothetical protein HMPREF1026_01778 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896894|gb|EFV18974.1| hypothetical protein HMPREF1026_01778 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1255

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 124/394 (31%), Gaps = 36/394 (9%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E  +  ++  +       +  E F     Y+     +Y+     +          I 
Sbjct: 317 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLRIL 376

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            F  N    F+D    +    L+   +L ++ + F    +       +++ +++E L+ +
Sbjct: 377 KFYTNNDFAFKDV--HNEQLFLQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLLSK 433

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAM 224
                 +    F TP  +       L  P + + K   G     + D  CG G FLT+  
Sbjct: 434 ---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTEGF 488

Query: 225 NHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             V+ C   +     L          G E +     V    + +                
Sbjct: 489 EAVSACVKANDSLRELDRSFAENNIFGIEKDYRLARVSKISLFMHGAGEGNIIFGDGLEN 548

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                 K       F   ++NPP+     K    +    KN             S+   L
Sbjct: 549 YPDKNIKP----NTFDILVANPPYSVSAFKPHLKL----KNNSFSILDTISNNGSEIETL 600

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI--RRWLLENDLIEAIVALPT 395
           F+  ++  L+        AA++L SS L        ES I  R  +L+N  I AIV +  
Sbjct: 601 FVERISQLLKP----NAVAAVILPSSIL----NKENESFICARESILKNFKIRAIVLMGN 652

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL--INA 427
             F  T   T +  L       ++  +    I+A
Sbjct: 653 KTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDA 686


>gi|254362802|ref|ZP_04978883.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153094431|gb|EDN75279.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 667

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 118/361 (32%), Gaps = 72/361 (19%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +T + L++ I S  D AK  +E     S    L  + L      +   ++L    +   V
Sbjct: 252 DTESELKAKIQSLFDRAKNKWEGVFAESAKINLSPSHLAI-CVSSLEEVKLFNSNL--DV 308

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   +E+LI +           + TPR V+ +   +L           P    T+ D   
Sbjct: 309 VDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------DPKPEETVIDTAA 355

Query: 215 GTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCV 256
           G+ GF   ++ HV                   +                + + +   V  
Sbjct: 356 GSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPEQTDYVKEKVFAIDFDEKAVRVAR 415

Query: 257 -AGML----------IRRLESDPRRDLSKNIQQGSTLSKDLFT------------GKRFH 293
              ++          +  L+ +   D +K  +      +                  +F 
Sbjct: 416 TLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWNDVYGEGWKKLRKLRKTKNENRDFQFD 475

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNG 352
             ++NPPF    ++ +     E     LG+   G  +   G  +LF+    + L+     
Sbjct: 476 VLMANPPFAGDIKETRILARYE-----LGKNSKGKQQSKVGRDILFIERNLDFLK----D 526

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILS 411
           GGR AIVL           S +  IR ++ E   I A+V L  ++F   T   T +  + 
Sbjct: 527 GGRMAIVLPQGRF----NNSSDKYIRDFIAERCRILAVVGLHGNVFKPHTGTKTSVLFVQ 582

Query: 412 N 412
            
Sbjct: 583 K 583


>gi|257064716|ref|YP_003144388.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792369|gb|ACV23039.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 650

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 134/410 (32%), Gaps = 56/410 (13%)

Query: 85  EYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           +        T  R+ +   +      S+N +             +  +A       +  +
Sbjct: 212 QQRWGQFTPTQIRSAIGEVLEDLLDGSNNKQTKIRLLKRDVLEDQKVRALTQEDWIEVLT 271

Query: 142 GIELHPDTVPDRVMS---NIYEHLIRRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDA 197
            I ++     D   S   +I       F   V +       TP  +      L       
Sbjct: 272 DILMNIYRYIDADSSEGQDILNLFFITFNKYVGKADKNQAFTPDHITDFMAQLT------ 325

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCG---------SHHKIPPILVPHGQEL 247
                      + D  CG+G FL  AM   +AD                       G E 
Sbjct: 326 ----EVTWKDVVLDECCGSGSFLVQAMVKELADARLGCTEAEFRERADEIKQHHIFGIEN 381

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWE 306
           E + + +    MLI         D + N++ GS   K  F    +    L NPP+  K  
Sbjct: 382 EEKAYGLSTTNMLIHG-------DGNSNVEFGSCFDKRQFIADAKPTVILMNPPYNAKPR 434

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               + +++    E  R G   P      ++F+ +L++  +     G R A++L  +   
Sbjct: 435 TIPASYKRDWTASE--RNGKSDPTKG---LVFVKYLSDIAKAEDWDGVRLAVLLPMAAAI 489

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE------ERR 419
               G+  S ++  LL ++ +EA+ +LP ++F+   ++     + +  ++         +
Sbjct: 490 --GTGTRLSSVKEMLLVDNTLEAVFSLPAEIFYPGASVQACCMLFTLNRSHYEADGCTPK 547

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDD---QRRQI----LDIYVSRENG 462
            +       D     R    +    + D   + ++I    LD+Y ++   
Sbjct: 548 KQTFFGYYRDDGFVKRKGLGRVEQFDADGHSEWKKILKKWLDLYRNKTIE 597


>gi|218562667|ref|YP_002344446.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112360373|emb|CAL35169.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315927941|gb|EFV07263.1| type I restriction modification DNA specificity domain protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 1339

 Score = 88.7 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 86/536 (16%), Positives = 177/536 (33%), Gaps = 42/536 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENGKF-SRM 467
           ++   +   + + +   I       NE   +  ++   D R+   ++Y +  NG   S++
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKL 713

Query: 468 LDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +   F      +R+    + L+ S I  ++   +   D  +   +   +   L      
Sbjct: 714 AELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLS 773

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           + Q      + S +KE  K    +    K  +               R +P  +  
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNETK 829


>gi|201067988|ref|ZP_03217840.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004432|gb|EDZ04944.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 140

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 6/135 (4%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S+++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNNLGFFNYSQFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGL 132
           F F + +  LE++ +
Sbjct: 122 FKFKNQLDTLEESNI 136


>gi|148927590|ref|ZP_01811061.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147887066|gb|EDK72563.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 330

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S+  + F+ H+ ++L++     G+AA+++  + LF G AG     IR+ LL+   I  
Sbjct: 157 TTSNKQLNFVQHICSQLKV----DGKAAVIVPDNVLFEGGAGE---TIRKKLLQTTEIHT 209

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LPT +F+   +   +    NR    +  + + +   D+ T+     K+++ + +   
Sbjct: 210 ILRLPTGIFYANGVKANVIFFDNR-PASKEVQTKDVWVYDMRTNQHFTLKEKK-LANADL 267

Query: 450 RQILDIY-----VSRENGKFSRMLDYRTFGYRRIK 479
              +  Y       R   +  +   Y     R   
Sbjct: 268 ADFIKCYNPDNRHQRSETERFKKFTYDEVVTRDKT 302


>gi|325577622|ref|ZP_08147897.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160367|gb|EGC72493.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 615

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 118/353 (33%), Gaps = 44/353 (12%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMT 179
            S   R  K      I +      L      + +  ++       F   V +       T
Sbjct: 245 DSQDIRDLKIDEFKNILRTIETKILPYINDKNTMGQDLLNLFFTTFNKYVGKSDKNQAFT 304

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKI 236
           P  +VH    ++    +++          + DP CG+G FL  A+    D     S  + 
Sbjct: 305 PDHIVHFMCKVVGVNRNSV----------VLDPCCGSGAFLVRALTEAMDDCNTESEREK 354

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYC 295
                 +G E E     +    MLI         D + NI+QG+   +    + K  +  
Sbjct: 355 IKSSQIYGIEYEETAFGLATTNMLIHG-------DGNSNIKQGNCFLELKELSTKGINVV 407

Query: 296 LSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           L NPP+  ++   D + VE   +  +                    H   K+      G 
Sbjct: 408 LMNPPYNAQRKHCDPEYVESWSEKIK-------EDPTKG------FHFVYKVASYIRTGK 454

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSN 412
            A ++     +    A S     ++ +L+   ++A+ + P+D+F    + +   +     
Sbjct: 455 LAVLLPMQCAI---GASSDIQTYKKKMLDEHTLDAVFSFPSDIFHPGASAVTCCMIFELG 511

Query: 413 RKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQI--LDIYVSRENG 462
            K +  +         D  +   +N G+  +     QRR+   LD+Y  R+  
Sbjct: 512 TKHKNSKKDTFFGYFKDDGFEKRKNLGRMEKENKAWQRRESKWLDLYFKRKEE 564


>gi|224024623|ref|ZP_03642989.1| hypothetical protein BACCOPRO_01350 [Bacteroides coprophilus DSM
           18228]
 gi|224017845|gb|EEF75857.1| hypothetical protein BACCOPRO_01350 [Bacteroides coprophilus DSM
           18228]
          Length = 682

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/433 (14%), Positives = 134/433 (30%), Gaps = 79/433 (18%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
              E+   +  I ++EK     K    K    + ++    +       ++  +    G  
Sbjct: 295 RTLENTLTTENINKVEKGESQLKRVFTKIIDDLGIYYKIGLTTDFTGKLFNEMYGWLGFS 354

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-- 227
             +  +  +TP  V  L   L     D+           ++D   G+ G L  AMN +  
Sbjct: 355 QDKLNDVVLTPAYVAKLLVKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLI 404

Query: 228 ---------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQ 277
                     +              G EL P  + + +  M++     S+   + S    
Sbjct: 405 DAKNNIKSPEELAKKELEIKSKQLLGIELLPSVYMLAILNMILMGDGSSNILNEDSLKDF 464

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G+    D          + NPP+                       G G+  +      
Sbjct: 465 DGNYGYSDKQDKFPADAFVLNPPYSA--------------------NGNGMNFVEKA--- 501

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                     L     G AAI++  S           +E  + +L+ + + A + +P DL
Sbjct: 502 ----------LGMMNRGYAAIIIQGSA-----GTGKATEYNKRILKRNTLLASIKMPIDL 546

Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F   +N+ TY+++    +  ++   V+ I+ ++   +  N  K    + D    +     
Sbjct: 547 FIGKSNVQTYIYVFRVNEAHKKDEIVKFIDFSNDGYTRTNRKKASCNLRDTDHAK----- 601

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
                 ++  +++   FG  ++       ++           E+   W + +P+     L
Sbjct: 602 -----ERYEEVVNLVRFGKSKL-----HYLTDKEYYEDTIDPESGKDWNQTAPIDTKPTL 651

Query: 517 DILKPMMQQIYPY 529
              K  +     +
Sbjct: 652 QDFKKTVSDYLAW 664


>gi|302554826|ref|ZP_07307168.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302472444|gb|EFL35537.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 556

 Score = 88.3 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 90/271 (33%), Gaps = 45/271 (16%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L  RF         D +T   VV              F     +  T++DP CG G  L 
Sbjct: 136 LTDRFMDSARRAGSDQVTSERVVRAVCH---------FAPELPVGATVFDPACGIGVLLL 186

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              +                  GQE++ ++            L ++       ++  G +
Sbjct: 187 SVAS-----------ESGARCRGQEMDTDSARFAQ-------LRAELLGRSEVSVVAGDS 228

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L  D +   R    + +PP G      +  +          R+  G P  ++G + +L H
Sbjct: 229 LRADAWPDLRADLIVCDPPAGVTEWGREQLLLD-------SRWELGTPSKAEGELAWLQH 281

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
                      GG+  +V+ +S  +          IR  L+   ++  +VALP       
Sbjct: 282 AYAH----TAPGGQVLMVMPASVAYRKAG----RRIRSELVRRGIVRQVVALPPGTATSH 333

Query: 402 NIATYLWILSNRKTEERRG---KVQLINATD 429
           ++  +LW L   +          V++++ TD
Sbjct: 334 SLPVHLWCLRRPENTSGTDTHHTVRMVDLTD 364


>gi|315453693|ref|YP_004073963.1| Type II restriction-modification enzyme [Helicobacter felis ATCC
           49179]
 gi|315132745|emb|CBY83373.1| Type II restriction-modification enzyme [Helicobacter felis ATCC
           49179]
          Length = 1627

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 181/644 (28%), Gaps = 83/644 (12%)

Query: 19  AEDLW----GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           A  L     G+++++     IL    L ++   L+       E+ L F       +S +K
Sbjct: 275 ATILRHHSIGNYENS---FYILVDLFLCKVMDELQNEGKDEEEQSLDFYYKGPAADSPLK 331

Query: 75  VAGYSF----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                           +     ++         +  + Y   F  +  A+F+   + +  
Sbjct: 332 YCDRLLDLYAKGVEELFKKKVVNVKKEEIAKLFDTAKRYKGKFKKDLDALFDQQKYFNIK 391

Query: 125 ARLEK----------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                             +     +         +  ++ + +++E  + R    + +  
Sbjct: 392 KFNFIEIENEEEFQLNFKILVQVADLIKKFYICKSENNQFLGDLFEGFLNR---HIHQTE 448

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  + +     L                 + D  CG G FLT+ M    D     
Sbjct: 449 GRFFTPTPITNFIIHSLPPLTSNP---------KVLDFACGAGHFLTEFMARHKDA---- 495

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G E   +   V     +    +S         +          F  + F Y
Sbjct: 496 ------KVYGIEKNKDLSKVAKLACIFHNPKSPSLIIFQDALDHIHHTHSQEFEMESFDY 549

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPP+  K      +                  K  + +         +       GG
Sbjct: 550 ILSNPPYSVK---GFLSTLDSSVIKSYELHHSVEEKSYESNNAIECFFIERAWHFLKEGG 606

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             A++L  S L   + G    + R  LLE+  I  IV L +  F  T   T +      K
Sbjct: 607 VFALILPVSVL---QKGGIYEKTRTLLLEHFKILCIVELNSRTFGSTGTQTIILCAQKLK 663

Query: 415 TE-----ERRGKVQL--------------INATDLWTSIRNEGKKRRIIN-------DDQ 448
                  E   +V                +NA   +     E  K  +         +  
Sbjct: 664 KYSADLIEALQEVGFENADLKKDFAQNALLNAYCAFRGYPQEDFKVFLKEQSLSLALEKS 723

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            ++  D + ++E   F + +  ++      +   P        +     L+++     L 
Sbjct: 724 FKEYFDDFNAKEPKVFKKAIPTKSQQNAWFEASSPQDKRAYKAELERY-LKSETYQESLK 782

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              +   L  +  +  +      +    +  I  +  +     ++K+ IV F+  +    
Sbjct: 783 AWQREQVLAQIHALELEKMLLFASVQEEEVLILKSPPEKKGNASNKAKIVEFL-GYDWSK 841

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVP 612
            + D           D +     N+   + IQ       +P  P
Sbjct: 842 RKGDEGIKYTSTQTEDPDNQALSNIQSAKHIQTPLYNPSNPDDP 885


>gi|197294500|ref|YP_001799041.1| Restriction enzyme alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853827|emb|CAM11772.1| Restriction enzyme alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 587

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 111/346 (32%), Gaps = 63/346 (18%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++    L+Y + +    I     +    VM   Y   I+    +  +     +TP  + 
Sbjct: 244 NKIPNNNLVYFLTELKEKIMPFIHSDQWDVMGTFYREFIKYVTED--KQTGLVLTPPHIT 301

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---V 241
                L       +          + DP CGTGGFL  AM ++     + K   ++    
Sbjct: 302 DFFCELADIQSSDI----------VLDPCCGTGGFLIAAMKYMCQKAKNEKQIEVIKTKQ 351

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNP 299
             G E   +        M++         D   NI  G       D F   +      NP
Sbjct: 352 LLGIEKRKDMWLHASVNMMMHG-------DGHTNIFYGDCFKFKIDNFKHNQPTVVFLNP 404

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+               +  E  RF                 +   LEL    G   AIV
Sbjct: 405 PYN--------------EPSEQLRF-----------------IQKALELTTPKGQVIAIV 433

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
            +S+   +    + + EI    L N  + A  + P +LF     + T + I +     + 
Sbjct: 434 QASATGQSTAVNNAKKEI----LNNHTLLASFSCPKELFHGIAGVITNILIFAAHVPHDS 489

Query: 419 RGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +    L    D  +   +N+  ++       + + +DIY +++  K
Sbjct: 490 KKNTFLGWFKDDGFIKQKNKRIEKNWKL--IKDKWIDIYRNKKEVK 533


>gi|170718170|ref|YP_001785196.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826299|gb|ACA31670.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 513

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 96/307 (31%), Gaps = 35/307 (11%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIE----LHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
            DF  +   L K        KN + ++    L P  +       I    ++   S     
Sbjct: 136 IDFYGS--HLPKPLTPDFKIKNDALLDILKVLSPIRITYSKRDIIQSFYMKFAKSLYKWD 193

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  +      ++          +      ++DP CG+  FL  A          
Sbjct: 194 LAQFFTPTPITDFIIDVM----------NLKFGEHVFDPACGSADFLVAAFQTARKFNHG 243

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           H         G +       V +  M++         D   NI++  +L       K+++
Sbjct: 244 HAD----YIWGNDNSDNAVQVAILNMVLNG-------DGKTNIKKIDSLETINDDYKQYN 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM----HLANKLELP 349
             L NPPFG K  + +  V K    G           +   S+L                
Sbjct: 293 LILCNPPFGSKILERRTEVLKNFDLGFQWILEKNTFILDKNSLLSQQESGLLFVELCVRK 352

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYL 407
               GR AI+L +  L  G         R WLL +  I  I ALP   F  +   ++  +
Sbjct: 353 AKKEGRIAIILPNGYL--GNHSEKFLIFREWLLRHVKIAGICALPRFSFKSSGADVSASI 410

Query: 408 WILSNRK 414
             L  RK
Sbjct: 411 LFLEKRK 417


>gi|268324774|emb|CBH38362.1| hypothetical protein BSM_18390 [uncultured archaeon]
          Length = 186

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 56/170 (32%), Gaps = 17/170 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +       +WK A+ L  +    ++  V+L    L+ +  + +     ++E+     
Sbjct: 3   NNSAHLGFEQKLWKAADKLRSNMDAAEYKHVVLGSIFLKYISDSFDERHEQLQEQV---- 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR--------NNLESYIASFSDNAKAIF 115
               D E   + +  + +   E +       N +        ++    I   + + K + 
Sbjct: 59  SEGADPEDRNEYSMENIFWVPEKARWCYLQKNAKQPEIGKIIDDAMELIEKENPSLKGVL 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164
                  T+ +      L ++      I L   ++    ++  +YE+  +
Sbjct: 119 PKDYARPTLDK----RRLGELIDLIGTIGLGDYESKSKNILGRVYEYFFK 164


>gi|325840368|ref|ZP_08167015.1| N-6 DNA Methylase [Turicibacter sp. HGF1]
 gi|325490353|gb|EGC92680.1| N-6 DNA Methylase [Turicibacter sp. HGF1]
          Length = 615

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 120/376 (31%), Gaps = 64/376 (17%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +N L+S + S  D  K   ++      +  L K             +  +       +M
Sbjct: 253 IQNELKSTLLSLQDAQKEGIKEKYPKGALLELTKNVDNL--------LYDYHKHGELDIM 304

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S  +   +  + +         +TP  +  L   L     ++           + D   G
Sbjct: 305 SIFFTVFLS-YSTSGGSDLGIVLTPAHITKLFCDLAAINLES----------KVLDICAG 353

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TGGFLT A   +     + ++   +      +G E +   + +    M I        +D
Sbjct: 354 TGGFLTSAWKTIKLSDKYTEMQKEVFRQNNLYGVEKDKSIYTIIALNMFIN-------KD 406

Query: 272 LSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
              +I +G   S K   +    +    NPP+      +   VE                 
Sbjct: 407 GKSHIFKGDCFSLKKEISDFECNVGFINPPYSDSIYSELSFVE----------------- 449

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                      + + L     G    AI+  ++     +  S    +++ +L    + A 
Sbjct: 450 ----------LMLDSLLPESIG---IAILPVNAISSRTKKHSDILSVKQSILSKHTLVAS 496

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449
           + +P  LF+     T + +   +      G        D +  I+  + +  R+  D+Q 
Sbjct: 497 IQMPPLLFYPKGTETVVLVF--KTGAAHTGDTWFAKFDDGYELIKHQKTRTPRLDADEQY 554

Query: 450 RQILDIYVSRENGKFS 465
           RQ+LD Y  +    FS
Sbjct: 555 RQLLDAYCKKSETDFS 570


>gi|88596084|ref|ZP_01099321.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|88190925|gb|EAQ94897.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 84-25]
          Length = 1365

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 85/536 (15%), Positives = 175/536 (32%), Gaps = 42/536 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKNSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENGKF-SRM 467
           ++   +   + + +   I       NE   +  ++   D R+   ++Y +  NG   S +
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNL 713

Query: 468 LDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +   F      +R+    + L+ S    ++   +   D  +   +   +   L      
Sbjct: 714 AELEAFKDYRNAFRQTSDYKKLKESKFYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLS 773

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           + Q      + S +KE  K    +    K  +               R +P  +  
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNETK 829


>gi|283956448|ref|ZP_06373928.1| LOW QUALITY PROTEIN: hypothetical protein C1336_000250331
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792168|gb|EFC30957.1| LOW QUALITY PROTEIN: hypothetical protein C1336_000250331
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 1080

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 155/502 (30%), Gaps = 30/502 (5%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGY 475
           ++   +   + + +   I  E  K               +   +   +S  L+    F  
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNL 713

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             ++  +  R +F        +L+    +++            L              S 
Sbjct: 714 AELEAFKDYRNAFRQTS-DYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSL 772

Query: 536 VKESIKSNEAKTLKVKASKSFI 557
                         +K  K F+
Sbjct: 773 SLNQEVLIIKSPSDIKEQKKFL 794


>gi|157415312|ref|YP_001482568.1| hypothetical protein C8J_0992 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386276|gb|ABV52591.1| hypothetical protein C8J_0992 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315932187|gb|EFV11130.1| type I restriction modification DNA specificity domain protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 1190

 Score = 87.5 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 155/502 (30%), Gaps = 30/502 (5%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 220 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 279

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 280 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 335

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 336 F---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 392

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 393 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 452

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 453 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 507

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 508 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 564

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGY 475
           ++   +   + + +   I  E  K               +   +   +S  L+    F  
Sbjct: 565 KQENHLISQDYSLIKERIEAENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNL 624

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             ++  +  R +F        +L+    +++            L              S 
Sbjct: 625 AELEAFKDYRNAFRQTS-DYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSL 683

Query: 536 VKESIKSNEAKTLKVKASKSFI 557
                         +K  K F+
Sbjct: 684 SLNQEVLIIKSPSDIKEQKKFL 705


>gi|240047665|ref|YP_002961053.1| hypothetical protein MCJ_005510 [Mycoplasma conjunctivae HRC/581]
 gi|239985237|emb|CAT05250.1| HYPOTHETICAL Restriction enzyme BgcI subunit alpha [Mycoplasma
           conjunctivae]
          Length = 777

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 155/476 (32%), Gaps = 65/476 (13%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-ARLEKAGLLYKICKN---FSGIELHP 147
            S +  N ++  I +  ++ +   E  + +S++   ++   L Y+  +    F   E+ P
Sbjct: 197 KSKDILNLIKDIIKNKINDDQNAKEKLEVTSSVLDDMQLVNLKYENLQRIIYFIEKEIIP 256

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSE-----GAEDFMTPRDVVHLATALLLDPDDALFKES 202
                       E L+  F +  ++           TP  +     +L+   +++     
Sbjct: 257 FIDEKSNYG---EDLLNLFFTTFNKYVQKDDKNQAFTPSHITDFMASLVQINENS----- 308

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGM 259
                 + DPTCG+G FL  AM+ +       K+   +      G E E    ++    M
Sbjct: 309 -----RVLDPTCGSGSFLVQAMSQMIKNIDDPKLKQKIKREQIFGIESEYIAFSLASTNM 363

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           LI           S   +      ++    K  +  L NPPF  K       V++     
Sbjct: 364 LIHDDGLSNIVLDSCFER------REWIESKNINAVLMNPPFNGKNMPSDFTVKENTGMD 417

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                       S   + F+  +AN ++     G   A +L  +          E +  +
Sbjct: 418 ------------STKGLAFVEFVANSVKTK---GALLATILPLATAIGRDQIIKEYK--K 460

Query: 380 WLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L    ++A+ ++P DLF    + +  + +    K   +R           +       
Sbjct: 461 KMLAKHTLKAVFSMPNDLFHPGASASVCIMLFELNKPHIKRNATFF-----GYYKDDGFI 515

Query: 439 KKRRIINDDQRRQI------LDIY-VSRENGKFSRMLDY----RTFGYRRIKVLRPLRMS 487
           KK+ +   +++         L+ Y  S+E  +FS + +            ++       +
Sbjct: 516 KKKNLGRVEKKDWNLTKQLWLETYLQSKEIPEFSVLENVDHNDEWLAEAYMETDYNQLQA 575

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           +   KT    L   +    L  +  +  +     +  + + Y       +     N
Sbjct: 576 WDFSKTIRDYLSFKLKNGILEKISDNKIIQDNLKLNVKEWKYFQISDLFEVKKAKN 631


>gi|193069590|ref|ZP_03050543.1| type IIS restriction enzyme M protein [Escherichia coli E110019]
 gi|192957137|gb|EDV87587.1| type IIS restriction enzyme M protein [Escherichia coli E110019]
          Length = 653

 Score = 87.1 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 141/433 (32%), Gaps = 79/433 (18%)

Query: 129 KAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++ L     K    + E +   +       ++  + R  G    +  +  +TP  V  L 
Sbjct: 285 ESQLKRVFVKVVDDLGEYYKIGLTTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLL 344

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPPILVPH--- 243
             L     D+           ++D   G+ G L  AMN +  D   +   P  L      
Sbjct: 345 ARLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDARENIHSPNELQLKEAQ 394

Query: 244 -------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--HY 294
                  G E+    + + +  M++   +         ++           TG++F    
Sbjct: 395 IKAEQLLGLEVLSSIYMLAILNMILMG-DGSSNILNKDSLADFDGKYGFGKTGEKFPADA 453

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+  K                               M+F+    + +       G
Sbjct: 454 FILNPPYSAKGNG----------------------------MIFVQKALSMM-----DKG 480

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
            AA+++ SS           +E  + +L+ + + A + +P DLF   +++ TY+++   +
Sbjct: 481 YAAVIIQSSA-----GTGKATEYNKKILKENTLLASIKMPADLFIGKSSVQTYIYVFQVK 535

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +  V+ I+ ++   +  N  K R  + D  R +           ++  ++D   F
Sbjct: 536 IPHNAKQAVKFIDFSNDGYARSNRKKARNNLVDADRAK----------ERYQEVVDLVHF 585

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           G   + +             G    ++   W +  P+     L+  K  +     +  ++
Sbjct: 586 GKGCLNIFTEDEYF-----EGTIDPDSGEDWNQTRPVDARPTLEDFKKTVGDYLAWEVSQ 640

Query: 534 SFVKESIKSNEAK 546
              K+   +   K
Sbjct: 641 LLKKQGENNFAGK 653


>gi|307704623|ref|ZP_07641525.1| restriction enzyme BgcI alpha subunit [Streptococcus mitis SK597]
 gi|307621825|gb|EFO00860.1| restriction enzyme BgcI alpha subunit [Streptococcus mitis SK597]
          Length = 680

 Score = 87.1 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 117/391 (29%), Gaps = 75/391 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +M  +Y   + ++     +     +TP  V  +   +L    ++           + D 
Sbjct: 342 DIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQILGITSES----------KVMDL 390

Query: 213 TCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQELEPETHAVCVAGML 260
             G+ GFL  AM  + D                          G EL  E + +    M+
Sbjct: 391 ATGSVGFLISAMELMIDHANISFGKGTSRANDEIAKLKKDNLLGIELNAEMYTLATTNMI 450

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +R   S      S   +      + LF   + +  L NPPF              ++   
Sbjct: 451 LRGDGSSRIEKGSAFNR-----PESLFMDFKANRVLLNPPFS-------------YEENG 492

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L     GL K+                     GG  AI++  S        +      + 
Sbjct: 493 LPFIAYGLDKM-------------------ERGGLGAIIIQDSAGSGKAIKTA-----QA 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+   +   + +P DLF     + T ++I    +  +    V+ I+  +        G 
Sbjct: 529 ILKKHTLLTSIKMPVDLFIPMAGVQTSIYIFKAHEAHDYDQTVKFIDFRNDGFKRAKRGI 588

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSR---------MLDYRTFGYRRIKVLRPLRMSFIL 490
                   + + ++ IY + +  + S+         + D+ T         +   +    
Sbjct: 589 SEVDNPIQRYQDVIKIYKAGKRAEVSKELWDLDAIFIEDFITDKGNDWNFEQHQIIDTKP 648

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKP 521
                 +  AD    ++  L +S   D  K 
Sbjct: 649 TLDDFKKTVADYLAWEVEQLLKSKGEDSSKK 679


>gi|307747955|gb|ADN91225.1| Type I restriction modification enzyme [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 1279

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 155/502 (30%), Gaps = 30/502 (5%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVK---GFLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGY 475
           ++   +   + + +   I  E  K               +   +   +S  L+    F  
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNL 713

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             ++  +  R +F        +L+    +++            L              S 
Sbjct: 714 AELEAFKDYRNAFRQTS-DYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSL 772

Query: 536 VKESIKSNEAKTLKVKASKSFI 557
                         +K  K F+
Sbjct: 773 SLNQEVLIIKSPSDIKEQKKFL 794


>gi|57237937|ref|YP_179185.1| type II restriction-modification enzyme [Campylobacter jejuni
           RM1221]
 gi|57166741|gb|AAW35520.1| type II restriction-modification enzyme [Campylobacter jejuni
           RM1221]
 gi|315058494|gb|ADT72823.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M / Type I restriction-modification system,
           specificity subunit S [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 1343

 Score = 87.1 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 73/501 (14%), Positives = 150/501 (29%), Gaps = 28/501 (5%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKNSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           ++   +   + + +   I  E  K               +   +   +S  L+       
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNL 713

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
                     +     +   +L+    +++            L              S  
Sbjct: 714 AELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLS 773

Query: 537 KESIKSNEAKTLKVKASKSFI 557
                        +K  K F+
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFL 794


>gi|325677597|ref|ZP_08157254.1| hypothetical protein CUS_4322 [Ruminococcus albus 8]
 gi|324110707|gb|EGC04866.1| hypothetical protein CUS_4322 [Ruminococcus albus 8]
          Length = 113

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++  NFIW  A  L G ++   +  VI+P  ++RR ECALE T+ AV E+Y         
Sbjct: 18  STEVNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYK--KNPAYP 75

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYI 104
            ++  +V+GY F+NTSEY+L+ L     +   N  +YI
Sbjct: 76  AKAMCRVSGYQFFNTSEYTLAELVNDPDHLAANFRNYI 113


>gi|298241943|ref|ZP_06965750.1| restriction modification system DNA specificity domain protein
           [Ktedonobacter racemifer DSM 44963]
 gi|297554997|gb|EFH88861.1| restriction modification system DNA specificity domain protein
           [Ktedonobacter racemifer DSM 44963]
          Length = 790

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 79/524 (15%), Positives = 155/524 (29%), Gaps = 62/524 (11%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
              +  S L +   + N    IA     A    +                L  I K    
Sbjct: 197 PRRFRASNLSNHQIKAN----IAQLYKEAFINLDGKPIEEK-PWFFSPHALSNIVKILEP 251

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
             L P  V D +  +++    + F   +      F TP  +      L            
Sbjct: 252 YALLP--VTDSIRGHLF---WQMFAEFMRMNETGFTTPVPLADFLVRLT----------Q 296

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVA----------DCGSHHKIPPILVPHGQELEPETH 252
               + + DP CGTG  L  A+  +                 +  P  V  G E+E E  
Sbjct: 297 LREGQRIIDPACGTGLLLIVALEIIKAQVATNHLSSQDNPSLQKKPQYVIAGIEIEAEVA 356

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    +++  +      + +   +    L         +   L +PP G   + +    
Sbjct: 357 ELAATNLVLNGISPSAVINANALDKHN--LRYSGVQLSTYDTVLLHPPMGLAPKNENILS 414

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           + E           G  K     MLF+    + L      GG    ++  S L +    S
Sbjct: 415 QYEII---------GNNKRPTLEMLFIELAIDLLRP----GGLLVSLVPDSFLSSPSYQS 461

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK-TEERRGKVQLINATD 429
                R WLL+  L  AI++LP +       +  T + +L  +   +  + +V + +   
Sbjct: 462 A----RSWLLQRTLPRAIISLPPETLMPIGHSGKTTVLLLEKKNIQQNHQDRVLIADVQS 517

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
           +  +   +     ++ D    +  + Y  R + + S                     S  
Sbjct: 518 VGYNRFGQPTGENVLPD--LLESFETYCKRGDIENS--FSNEKIRVW--TTSTNDLSSKR 571

Query: 490 LDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           LD         D+ +  K          +I+  +  + + Y    +     I++   + L
Sbjct: 572 LDIGQFDPTSTDLVYTLKHGQYPFVKLNEIVNIIGGRNFKYVEYAANTAIVIQAGAVRDL 631

Query: 549 KVKASKS---FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
            +    +    +  F NA        D +    G ++    + +
Sbjct: 632 TLDLLNAPSISVKDFDNAKNAHVEFGDILVTTTGAYLGRACVFD 675


>gi|194246656|ref|YP_002004295.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|193807013|emb|CAP18449.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
          Length = 702

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 123/384 (32%), Gaps = 61/384 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L + N  +    Y+       K++  D         LE+         +        +
Sbjct: 133 NVLLNQNINDEKIKYLHEQMCLIKSLLGDNGLEIIKDVLEELKTNIYHLLD------SKN 186

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++ N YE  + ++    +      +TPR +  L T L+                 
Sbjct: 187 KYSYDIIGNFYEVFL-KYAGVTNVKNGIVLTPRHITELFTKLI----------DISSTDV 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRR 263
           + DP CGTGGFL   MN + D   +     I         G + +P  + + ++ ML R 
Sbjct: 236 VLDPCCGTGGFLIAGMNSIIDKLDNKNEKEINKIKQNQIIGFDKDPTMYTLSISNMLFRG 295

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                  +L    ++     K+    K+      NPP+  K     +  +KE +  E   
Sbjct: 296 DGKSQIYNLDFFSEEVDKKIKEGT--KKPTIGFINPPYAGK-STPINPTKKEIEFLE--- 349

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                                  +L     GR  ++   S   N         IR  +L+
Sbjct: 350 -----------------------KLLKLVDGRVVMIAPLSTYINDNP------IRNRILK 380

Query: 384 NDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW-TSIRNEGKKR 441
              +E I+ +P  +F    +  T + I         + +V   N  D      +N+G+  
Sbjct: 381 KHTLEKIIQMPKKIFEPNASTHTAISIFKTNIPHNNK-EVDFYNLEDDGLVLFKNKGRVD 439

Query: 442 RIINDDQRRQ-ILDIYVSRENGKF 464
           R        +  L+ + S+    +
Sbjct: 440 RFHKWGDIEKDFLNKFHSKYYDGY 463


>gi|57242351|ref|ZP_00370290.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017031|gb|EAL53813.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 818

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 129/394 (32%), Gaps = 46/394 (11%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L      T     +  +   G N   +  VK     +  +SE ++      +    L   
Sbjct: 163 LRSQFVGTTLLYIKNEVKKRGVNHINDELVKKLKDFWKISSEDAI----RASIERTLSDL 218

Query: 104 IASFSDNAKAI--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +   ++ AK I   +    +   I +L+    +  +    + I  + DT  +     +  
Sbjct: 219 LDGSNNKAKKIELLQKNVLNDQKIKKLKSNDWIEILTTILTDIYKYIDTESEEGQDILNL 278

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             I               TP  +      ++               + + D TCG+G FL
Sbjct: 279 FFIAFNKYTGKADKNQAFTPDHITDFMCRVV----------GVDRTKRVLDITCGSGSFL 328

Query: 221 TDAM----------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
             AM              +     +       +G E+E + + +    MLI         
Sbjct: 329 VQAMVKELSDCKRGKTEKEAKELMEKVKKENIYGIEVEEKAYGLATTNMLIHG------- 381

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           D + NI+ GS   K  F         L NPP+  K     +  + +   G   + G   P
Sbjct: 382 DGNSNIEFGSCFEKKEFIKAANPDIILMNPPYNAKPISIPEYYKNKWSKG--AKEGKEDP 439

Query: 330 KISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 + +L  +  ++      +       + A++L  S     ++      I+  +LE
Sbjct: 440 TKGLVFIQYLSDIIKEINEEREAKNEARKEVKLAVLLPMSAAIGSKSDI--KNIKEAMLE 497

Query: 384 NDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE 416
           N+ +EA+  LP ++F+   +++    + +  K  
Sbjct: 498 NNTLEAVFTLPAEVFYPGASVSACCMVFTLGKPH 531


>gi|25028882|ref|NP_738936.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|259507944|ref|ZP_05750844.1| type I restriction-modification system methylase [Corynebacterium
           efficiens YS-314]
 gi|23494169|dbj|BAC19136.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|259164439|gb|EEW48993.1| type I restriction-modification system methylase [Corynebacterium
           efficiens YS-314]
          Length = 598

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 136/390 (34%), Gaps = 51/390 (13%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP CG GG L    N              L   G +++     +      +  +   
Sbjct: 138 TVFDPACGIGGTLLRLYN----------KQQNLALIGNDIDGVAVTIAQLHAYLAGI--- 184

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                        +L+ ++    R    ++ PP G + ++D        +   L R G  
Sbjct: 185 -----PATFTHSDSLTSEIHGELRSQTIITEPPMGMRPDRDV-------QQNVLARAGFD 232

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                    LFL    + L      GG A ++ S++  F G +     +IR+ L+   L+
Sbjct: 233 AAGALTSDELFLYMALSNL----TPGGYAYVLTSTAAGFRGAS----QQIRQELVARGLV 284

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI-NATDLWTSIRNEGKKRRIIND 446
           EA++ LP+ L   + I T LW+L     +       LI +A+ +               D
Sbjct: 285 EAVIQLPSRLLPYSGIPTLLWVLHRPVGDPETS--LLIADASTVSDPQ-----------D 331

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           +  + + D+   RE    +R L           ++ P  +   L++  + R +       
Sbjct: 332 EIAQWLTDLRAGREIAIPARRLSLAELITNDGSIVPPALLRAELEEDEV-REDLKKAMSA 390

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK---VKASKSFIVAFINA 563
           LS   +      L   + +  P   + + +K+ I +N    ++   ++   +     I A
Sbjct: 391 LSSSVKKLRDLDLDEQIVERVPSSRSFTNLKQLIDTNAITRIRKPFLEGRDNAPKDGIEA 450

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
           F     +++           D  + + + V
Sbjct: 451 FMLSPAKSNRQPKKVKATEADLWIQDGDIV 480


>gi|194324119|ref|ZP_03057893.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|194321566|gb|EDX19050.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 169

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 14/156 (8%)

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ L+E +L++ IV LP  LF  T I   LW +   +  +    +  I+A +       
Sbjct: 2   IRKALVEANLVDCIVNLPAKLFLNTQIPASLWFIKRGRKTK---DILFIDARN---KGHL 55

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-------VLRPLRMSFI 489
             ++ +  +DD   +I   Y + +    S + D ++  Y  IK             ++++
Sbjct: 56  INRRTKEFSDDDITEIAQTYHNWKLSCHSEL-DSKSHKYEDIKGFCKSASYEEVAELNYV 114

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           L       LE        +    S    + + M Q+
Sbjct: 115 LTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQE 150


>gi|292630956|gb|AAF77188.2|AF264911_4 restriction and modification enzyme CjeI [Campylobacter jejuni]
          Length = 1273

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 86/536 (16%), Positives = 177/536 (33%), Gaps = 42/536 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +    +  ++       +G
Sbjct: 425 F---IMYSLPLQEMLSKNSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K          +        F   +   ++ S+        +     N   +A
Sbjct: 542 ANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQILNDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L +  F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGSQTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENGKF-SRM 467
           ++   +   + + +   I       NE   +  ++   D R+   ++Y +  NG   S +
Sbjct: 654 KQENHLISQDYSLIKERIEAENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNL 713

Query: 468 LDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +   F      +R+    + L+ S I  ++   +   D  +   +   +   L      
Sbjct: 714 AELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLS 773

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           + Q      + S +KE  K    +    K  +               R +P  +  
Sbjct: 774 LNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNETK 829


>gi|238854548|ref|ZP_04644885.1| putative N-6 DNA methylase [Lactobacillus jensenii 269-3]
 gi|282932366|ref|ZP_06337799.1| putative N-6 DNA methylase [Lactobacillus jensenii 208-1]
 gi|238832841|gb|EEQ25141.1| putative N-6 DNA methylase [Lactobacillus jensenii 269-3]
 gi|281303523|gb|EFA95692.1| putative N-6 DNA methylase [Lactobacillus jensenii 208-1]
          Length = 569

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 121/368 (32%), Gaps = 55/368 (14%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-VMSNIYE 160
             I    + AK  + D         L+   L     K  + ++ +     +R V+S  +E
Sbjct: 226 ETIKQLYNEAKNRWNDVFTKDDEITLDDDVL----IKVVAQLQHYSLMNSNRNVISEAFE 281

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            +I             F TP +V  L   +           +P    T++DP  GT GFL
Sbjct: 282 SIISY---ATKGSQGQFFTPENVARLMVEIA----------NPTESTTVFDPASGTAGFL 328

Query: 221 TDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR-LESDP 268
           T +M HV +     K+                  G E +     +  A M +     +  
Sbjct: 329 TTSMFHVWNQIQQTKMRDDAKKDKEQQYATNNLFGIEKDSFLAKISKAFMAVLGDGRAGI 388

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             + S   +     ++     K+F+  L+NPPFG    KD     +  +N E G      
Sbjct: 389 FVEDSLKEKNWKIATQAKIKDKKFNIILTNPPFG----KDIKLSTETKENFEFG------ 438

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              +   + F+      L      GG   ++L  +     +A     ++R  L   + I 
Sbjct: 439 ---NKIELAFIEMSLRYL----EKGGILGVILPETVFHAPKA----RQVREKLFYKNNIT 487

Query: 389 AIVALPTDLF-FRTNIATYLWILSNRKTEER---RGKVQLINATDLWTSIRNEGKKRRII 444
            I+ LP D F    N  T +  L   + ++      K+  I       +           
Sbjct: 488 HIIDLPHDTFRPYNNAKTDIIFLRKGERQQEFVTGIKIDEIGHDHTGKAKYKFDPHTFSF 547

Query: 445 NDDQRRQI 452
            D+   +I
Sbjct: 548 TDEIADKI 555


>gi|310828498|ref|YP_003960855.1| hypothetical protein ELI_2923 [Eubacterium limosum KIST612]
 gi|308740232|gb|ADO37892.1| hypothetical protein ELI_2923 [Eubacterium limosum KIST612]
          Length = 600

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 96/310 (30%), Gaps = 66/310 (21%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           D     + D   ++T  +              S      +   + VM   +    R    
Sbjct: 214 DILLEEYSDIKMNTTDNQQAIND-FIDWVVEISECVNSNEWRGEDVMGIFFNEFNRY--- 269

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHV 227
           +    A    TP  +      +L             M   + D TCG+GGFL  AM N +
Sbjct: 270 KKKSEAGQVFTPEHITDFMYKIL----------EVNMNDCILDATCGSGGFLVKAMANMI 319

Query: 228 ADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + G               +G E + E +A+  A MLI        +D   N++Q    +
Sbjct: 320 RESGGMKTKKASEIKSKQLYGIEFDREIYALACANMLIH-------KDGKTNLEQMDART 372

Query: 284 K---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +   +    K     L NPP+  K                                  + 
Sbjct: 373 EAACEWMQSKPITKVLMNPPYENK-------------------------------YGCMT 401

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            + N L+  P    + A +L    L             + +L+N  +  ++ LP DLFF 
Sbjct: 402 IVENVLDSVPTHT-QCAFILPDKKLEKASKAQM-----KRILKNHRLRKVIKLPEDLFFG 455

Query: 401 TNIATYLWIL 410
             I T +++ 
Sbjct: 456 VGITTSIFVF 465


>gi|222444446|ref|ZP_03606961.1| hypothetical protein METSMIALI_00057 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434011|gb|EEE41176.1| hypothetical protein METSMIALI_00057 [Methanobrevibacter smithii
           DSM 2375]
          Length = 456

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 76/520 (14%), Positives = 154/520 (29%), Gaps = 88/520 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW---GDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M E       + N I  +A  +    G  + +     I      + L   +      +  
Sbjct: 1   MQENNHKQIEITNSI-NSANRMLVASGFHERSGAMTQIACLLGYKYLSNNISNNSEDIGY 59

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           +           E  +   G          L  LG      N  S  A  SD    +F+ 
Sbjct: 60  EL----NEEFRYEKLLINKGEVI------ELLKLGIEQITQNNNSIQA--SDVFFDLFDM 107

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            DF+    + E         +                +  I   +I+   ++        
Sbjct: 108 IDFNR-FNKNEFWLTFIDAVEKICS-------ETTATIGEIMIFMIKYLSNDKRRDFIFM 159

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           +T   +  L                   +  +YDP    G  L    N +          
Sbjct: 160 LTEDSIKLLMAN-------------QKDVTNIYDPFADDGTLLAQIGNVI---------- 196

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            +   +GQ    E   +    +L   +             + + + + +    +F   ++
Sbjct: 197 NVENYYGQHPNREKCIMAKMTLLTNDINYKNI------FIKCNDIIEPIPWNVKFDLGVT 250

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
             PFG K  +          +   G F     ++S+ S L        +       G   
Sbjct: 251 ISPFGIKGGR------FNEMDVRFGNF--AHKRLSEISYLL------DMFYNLEDDGTIR 296

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I++  + L          +I ++L++N+ I  I+ LP  LF    + T L I++  KT +
Sbjct: 297 IIVPDAVLRLSSN----KKIFQYLVDNEFISTIIGLPGGLFGANGVLTALLIIN--KTPK 350

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----GKFSRMLDYRTF 473
            +G    I   +L         K+R  + +     + I  ++E        + + D +  
Sbjct: 351 NKG----IFYLNLRNVKNRSLGKKRATSIEDIDNYIKILSNKEELELTSNTATIEDIKEN 406

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y        L ++  +D   L  ++ + T   +  + + 
Sbjct: 407 DYN-------LAINRYVDSEKLEEIDIEQTIANIKAIKEE 439


>gi|322372143|ref|ZP_08046684.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253]
 gi|320548152|gb|EFW89825.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253]
          Length = 920

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 109/328 (33%), Gaps = 44/328 (13%)

Query: 141 SGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             IE  P   V   +   +YE LI     +       F TP ++  L +           
Sbjct: 266 DSIEREPLSEVDIDIAGWVYERLIP---DDERTRLGQFYTPDEIGRLLSR---------- 312

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    + DP  GTG     A + + + G+     P+      +++  +  +    +
Sbjct: 313 WAIRSPDDRVLDPASGTGSLTVHAYDRLDELGTRSHWDPLERLTAVDVDGFSLRLLALNL 372

Query: 260 LIRRLE--SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             R     ++      +          D  T  RF   ++NPP+ ++   +  A ++EH 
Sbjct: 373 ASRGGHDPANGPFAADRFAYHRDFFDLDPDTVGRFDATVANPPYVRQ---ECLAADREHF 429

Query: 318 NGELGRFGPGLP-------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              L  FGPG         K  DG      +           G R A V+ +  +     
Sbjct: 430 REHLADFGPGSDGIYADGEKEIDGRSDLYCYFLTHATGFLREGARLAWVVPTKWMVADYG 489

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL--SNRKTEERRGKVQLINAT 428
            S    ++R+L ++  +EA+V     LF    + T L +L  ++ +   R  +   +   
Sbjct: 490 PS----LQRFLYDHYTVEAVVGFRNRLFDDALVDTVLLLLERTDDEAVRRATETNFV--- 542

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIY 456
                        R+ +DD    I   Y
Sbjct: 543 ---------RINERMDSDDILDVIDRTY 561


>gi|332800245|ref|YP_004461744.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
 gi|332697980|gb|AEE92437.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
          Length = 627

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/487 (14%), Positives = 148/487 (30%), Gaps = 110/487 (22%)

Query: 39  TL-LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
                 +E   +     +RE +         + +       + ++  EY    L + N  
Sbjct: 177 IFRYEYVEEYKDAAVQEIREAFKEIKDHPDYVATLDNGEKANIFSQDEY--IKLENPNIY 234

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +   +           E                             +   +   V+  
Sbjct: 235 IAVLKALQDLGPIKIDGVER--------------------------PANLMDLTGDVLGR 268

Query: 158 IYEHLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPGMIR-----TL 209
           +++ L+R +F ++       ++TPR V   A  ++L     D   K             +
Sbjct: 269 VFDVLLRGKFENKGG--MGIYLTPRQVTEAAAEMVLHDLTKDGAAKLIERDSEGIPTLRI 326

Query: 210 YDPTCGTGGFLTDAMNHVA---------DCGSHHKIPPILVPH---GQELEPETHAVCVA 257
            D  CG+ GFL   +             D   + ++   +  H   G +  P        
Sbjct: 327 GDLCCGSAGFLIKMLQKTERYLLNKLTGDKKQYEELFEEIKEHSFIGADNSPGMVLKARI 386

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-----GKKWEKDKDAV 312
            M +               Q  ++L         F   L+NPPF      K  +K +  V
Sbjct: 387 NMALHG------APKCPIFQTRNSLMNTRLEPGTFDAILTNPPFSKTGVSKTIKKGRTTV 440

Query: 313 EKE-------------HKNGELGRFGPGLPKISDGS-----------MLFLMHLANKLEL 348
           E                ++G+      GL   S                 ++ +   L+L
Sbjct: 441 ENPEGVEIIKYYSSDIDEDGQNRMNPYGLSLGSKPDSRGKWKEVNSVDPAVLFIDRNLQL 500

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL------------IEAIVALPTD 396
              GG    IV+    L    + SG+  +R +++                ++A+++LP +
Sbjct: 501 LKPGGLLM-IVVPDGIL----SNSGDKYVREYIMGKKNPVTGEFEGGKAILKAVISLPQE 555

Query: 397 LFF--RTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR--Q 451
            F        T L  L  ++   E++G V +  A ++  +++   + +  + DD     +
Sbjct: 556 TFALSGAGAKTSLLYLKKKEHPGEKQGPVFMAVADEVGFTVKQNVEVQ--LGDDHNDLLK 613

Query: 452 ILDIYVS 458
           I++ Y  
Sbjct: 614 IVEAYKK 620


>gi|329936983|ref|ZP_08286612.1| N-methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329303590|gb|EGG47475.1| N-methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 569

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 91/298 (30%), Gaps = 55/298 (18%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D     +   + E ++RR  +   +      +PR+VV      L D       +    
Sbjct: 115 SEDGGEGGIPDGLSEEVVRRVRALAGD-----TSPREVVTGLVERLTDSVRRAGSDQITS 169

Query: 206 IRTL----------------YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            R +                +DP CG G  L                      +GQE + 
Sbjct: 170 PRVVRAVSHYAGEVASDAALFDPACGIGTLLLAV-----------GPQRGPRRYGQENDA 218

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +         +                 G +L +D     +    + +PP G      +
Sbjct: 219 HSARFARLRAQLTGRGGVEIV-------TGDSLREDRLPELKADLVVCDPPVGISDWGRE 271

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           + +          R+  G P  ++G + +L H           GGR  +V+S+S  +   
Sbjct: 272 ELLLD-------SRWELGTPSRAEGELAWLQHAYAH----TAPGGRVLMVMSASVAYRKA 320

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
                  IR  L+   ++  + ALP        +  +LW L       +    V++++
Sbjct: 321 G----RRIRAELVRRGVLTQVTALPPGTAVSHALPVHLWHLRRPLSPGDAVTSVRMVD 374


>gi|254674214|emb|CBA09998.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis alpha275]
          Length = 215

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +L    L+ +                 +GG  I+L +           T +  +   
Sbjct: 21  KNYVLTLLFLKYVSDK------------HKYGGGMIELHAD---------TTFDDIVKLK 59

Query: 92  GSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELH 146
            + +  + L   IA  ++  + K + +  DF+         E    L ++   F  + L 
Sbjct: 60  NTADIGDRLNKIIAQIAEANDLKGVIDVADFNDEDKLGKGKEMIDRLSRLVGIFEKLNLS 119

Query: 147 PDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            +    D ++ + YE+L+R F +E  +    F TP +V  +   ++    D 
Sbjct: 120 SNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISADC 171


>gi|125973660|ref|YP_001037570.1| N-6 DNA methylase [Clostridium thermocellum ATCC 27405]
 gi|125713885|gb|ABN52377.1| N-6 DNA methylase [Clostridium thermocellum ATCC 27405]
          Length = 628

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 86/527 (16%), Positives = 165/527 (31%), Gaps = 93/527 (17%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKH-TDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           E       L   I+   + +        +F K+I        LE            K   
Sbjct: 117 ELQEKFDGLHEMIYGMKDHVNNSNDVIDEFSKLI-------FLETFRLYHPEYRLTKGNV 169

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            G    ++  +  V  +      E   +     +  + +         N  +  E     
Sbjct: 170 TGKLFNEIYRYEYVEKHKDKAVQEIREAFKEIKDHADYVAILDNGEKANIFSADEYIKLE 229

Query: 122 ST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-RFGSEVSEGAEDF 177
           +    IA L+    L  I  +          +   V+  +++ L+R +F ++       +
Sbjct: 230 NPNIYIAVLKALQDLGTIIIDGVERPATLRDLTGDVLGRVFDVLLRGKFENKGG--MGIY 287

Query: 178 MTPRDVVHLATALLL-----DPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHVA- 228
           +TPR V   A  ++L     D    L  + P        + D  CG+GGFL   +  +  
Sbjct: 288 LTPRQVTEAAAEMVLHDLTKDGAAKLIAKDPKTGIPTLRIGDLCCGSGGFLIKMLQKIEH 347

Query: 229 --------DCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                   D   + ++   +  H   G +  P         M +               Q
Sbjct: 348 YLLNKLTGDKKQYEELFEQMKEHCFIGADNAPGMVLKARINMALHG------APKCPIFQ 401

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPF-----GKKWEKDKDAVEK------------EHKNGE 320
             ++L         F   L+NPPF      K  +K K  VE             +     
Sbjct: 402 TRNSLMNTRLKPGTFDAILTNPPFSKTGISKTIKKGKTTVENPEGAEIIKYYSSDIDEDG 461

Query: 321 LGRFGP------------GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             R  P            G  K  +     ++ +   L+L   GG    IV+    L   
Sbjct: 462 QNRMSPYGLSLGSKPDSRGKWKEVNSVDPAVLFIDRNLQLLKPGGLLM-IVVPDGIL--- 517

Query: 369 RAGSGESEIRRWLLENDL------------IEAIVALPTDLFF--RTNIATYLWILSNRK 414
            + SG+  +R +++                ++A+++LP   F        T L  L  ++
Sbjct: 518 -SNSGDKYVREYIMGKKNPVTGEFEGGKAILKAVISLPQVTFALSGAGAKTSLLYLKKKE 576

Query: 415 -TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR--QILDIYVS 458
              E++G V +  A ++  +++   + +  + DD     +I++ Y  
Sbjct: 577 HPGEKQGPVFMAVADEVGFTVKQNVEVQ--LGDDHNDLLKIVEAYKK 621


>gi|256374368|ref|YP_003098028.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255918671|gb|ACU34182.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 712

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 90/263 (34%), Gaps = 53/263 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              A     P  +      L+           P    T++DP CG G  L     H+A  
Sbjct: 203 GRDAGHRTPP--LARCLVELV----------DPRPGETVHDPCCGDGRLLVAVAGHLA-- 248

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               + P      G+  +  +  VC A + IR + +D R               D F  +
Sbjct: 249 ---PESPGAGALSGRAADEVSSRVCAALLGIRGMSADLRAHG------------DGFRCE 293

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   +++PP        +     E      G             + ++ H   +L    
Sbjct: 294 LFDVVVAHPPVTLAPPGGEGPPLGEPSARGAG-------------LAWVQHALREL---- 336

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+++      +G+AG  +  +RR L+E  ++E +VALP       +    +W+L
Sbjct: 337 APGGRAALLVP-GSTASGQAGR-DVAVRRALVEAGVVECVVALP-----GRSSRAVVWVL 389

Query: 411 SNRKTEERRGKVQLINATDLWTS 433
                     +V  ++A      
Sbjct: 390 RAPGAGPVDPEVLFVDAAGGGEP 412


>gi|304411252|ref|ZP_07392867.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|304350445|gb|EFM14848.1| N-6 DNA methylase [Shewanella baltica OS183]
          Length = 680

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/421 (14%), Positives = 129/421 (30%), Gaps = 74/421 (17%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIR 164
           +D      E+   +  I ++       K    K    + ++    +       ++  +  
Sbjct: 289 NDLIVRTLENTLTTENINKVADGESQLKRVFTKIVDDLGIYYKIGLTTDFTGKLFNEMYG 348

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             G    +  +  +TP  +  L   L     D+           ++D   G+ G L  AM
Sbjct: 349 WLGFSQDKLNDVVLTPSYIATLLAKLARVNKDSY----------VWDFATGSAGLLVAAM 398

Query: 225 NHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           N +            +              G E+    + + +  M++         D S
Sbjct: 399 NEMLNDAKNTIASPEELVKKEVQIKAEQLLGLEMLSSVYMLAILNMILMG-------DGS 451

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI    +LS D     ++ +  ++ PF           +    N      G G+  +  
Sbjct: 452 SNILNEDSLSFDG----KYGFGKTDEPFPA---------DAFILNPPYSAPGNGMNFVEK 498

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
                         L     G AAI++ +S            EI + +L+   + A + +
Sbjct: 499 A-------------LGMMSRGYAAIIIQNSA-----GAGKAKEINQRILKKHTLSASIKM 540

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P D+F   +++ TY+++    +   +   V+ I+ ++      +  K    + D  R + 
Sbjct: 541 PIDIFIGKSSVQTYIYVFKVNEAHHKDDLVKFIDFSNDGYIRTSRKKSNNNLKDIDRAK- 599

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRP-LRMSFILDKTGLARLEADITWRKLSPLH 511
                     ++  ++    FG  ++ +          +D    A     I       L 
Sbjct: 600 ---------KRYEELVSLIRFGKSKLNIFSESQYYENTIDPNNGADWNQSIQIDTKPTLE 650

Query: 512 Q 512
            
Sbjct: 651 D 651


>gi|67922392|ref|ZP_00515903.1| similar to Type I restriction-modification system methyltransferase
           subunit [Crocosphaera watsonii WH 8501]
 gi|67855736|gb|EAM50984.1| similar to Type I restriction-modification system methyltransferase
           subunit [Crocosphaera watsonii WH 8501]
          Length = 349

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 131/375 (34%), Gaps = 70/375 (18%)

Query: 96  TRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKN---FSGIELHPD--- 148
              ++ES    F   A+ +F       S I  ++ +  L  + +     S I    D   
Sbjct: 6   ILKDIESAFRQFGYEAEDVFNAIAYIYSNIFSIKASEKLSGVLEKGKLISDIVFQDDCLK 65

Query: 149 ---------TVPDRVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                          ++  Y++ + +RF     +    F TP  +      +L    +A+
Sbjct: 66  KTINSYVKKDKDGENLTIFYQYFLAKRFRDISGK----FFTPHPIAMQMVKMLPVKANAV 121

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                     + DPTCG G FL        +   H          G +++     +    
Sbjct: 122 ----------IIDPTCGGGTFLKTVREQWKNIPCH--------LIGNDVDQMLICLTELV 163

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           + I +   +    L+ NI Q ++  +  F   +  Y L+NPPF          V+    N
Sbjct: 164 LKINKNHQENTSLLTSNIYQPNSQIQSFFG--QIDYILANPPFSL-------PVDIFTSN 214

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             L   G       +   L +      L+     GGR   +L  S + N      E +  
Sbjct: 215 SRLFESGY-----RNSDALLIDLSFKLLKP----GGRLVCLLPHSIISN-----KEYQNL 260

Query: 379 RWLLENDL-IEAIVALPTDLFFRTNIATY---LWILSNRKTE--ERRGKVQLINATDLWT 432
           R ++E D  + A++ LP  +F  T   T    + +L  +K E  +R  K    N + L  
Sbjct: 261 REIVEKDWYLTAVIILPEGIFKSTASTTTRADIIVLDKKKNEQVDRNRKTIFANISSL-- 318

Query: 433 SIRNEGKKRRIINDD 447
            I    +++++  +D
Sbjct: 319 DIPLNHRQKQVTTND 333


>gi|305431923|ref|ZP_07401090.1| type II restriction-modification enzyme [Campylobacter coli JV20]
 gi|304445007|gb|EFM37653.1| type II restriction-modification enzyme [Campylobacter coli JV20]
          Length = 737

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 82/506 (16%), Positives = 168/506 (33%), Gaps = 39/506 (7%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             +    L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F T
Sbjct: 1   MHNKELFLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFT 56

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      ++                 + D  CG G FL    N +    +  ++   
Sbjct: 57  PIQICEF---IMYSLPLQEMLSKSSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEH 113

Query: 240 LV-PHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGK 290
               +G E E     V    + M  +   +    D   + +  +T +      K      
Sbjct: 114 YKNIYGIEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESN 173

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPP+  K          +        F   +   ++ S+        +     
Sbjct: 174 SFDLLIANPPYSVK---GFLETLSDKSKNTYKLFNDDINIETNNSIECF--FCERANQIL 228

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N   +AAI+L SS L      S     R  L +N    AIV L    F  T   T +  L
Sbjct: 229 NDNAKAAIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFL 285

Query: 411 SNRKTEERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDIYVSRENG 462
             ++T ++   +   + + +   I       NE   +  ++   D R+   ++Y +  NG
Sbjct: 286 RKKETFKQENHLISQDYSLIKERIETENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNG 345

Query: 463 KF-SRMLDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
              S++ +   F      +R+    + L+ S I  ++   +   D  +   +   +   L
Sbjct: 346 NLDSKLAELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKL 405

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
                 + Q      + S +KE  K    +    K  +               R +P  +
Sbjct: 406 LYFSLSLNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNE 465

Query: 577 VNGE-WIPDTNLTEYENVPYLESIQD 601
                 I  + L   + +P    I  
Sbjct: 466 TKLNTLIYKSFLNTLDVIPQELQIYA 491


>gi|291531338|emb|CBK96923.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum 70/3]
          Length = 685

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 130/411 (31%), Gaps = 82/411 (19%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  +    G    +  +  +TP  V  L   L     D+           +
Sbjct: 337 ITTDFTGMLFNEMYNWLGFTQDKLNDVVLTPSYVARLLVKLARVDKDSY----------V 386

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAG 258
           +D   G+ G L  AMN + D        P                G E+ P+ + + +  
Sbjct: 387 WDFATGSAGLLVAAMNEMIDDAKEKISSPEEYQEKVAKIKATQLLGLEILPQIYMLAILN 446

Query: 259 MLIRRLESDPRRDL----SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           M++    S    +     + +   G + +K  F    F   + NPP+             
Sbjct: 447 MILMGDGSSNILNQDSLKNFDGNYGFSSTKKNFPATAF---VLNPPYSADGNG------- 496

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                                M+F+    + +E      G AAI++ +S           
Sbjct: 497 ---------------------MIFVEKALSMME-----NGYAAIIIQNSA-----GSGKA 525

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            +  + +L++  + A + +P DLF   +++ T +++    +    +  V+ I+ ++   +
Sbjct: 526 VKYNKEILKHSTLLASIKMPIDLFVGKSSVQTNIYVFKVGEPHHAKNTVKFIDFSNDGYT 585

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
             N  K    + D    +           ++  + D   FG   + +             
Sbjct: 586 RTNRKKASVNLRDTDHAK----------ERYQEIADIVRFGKSELNIFTEKEY-----YE 630

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           G    E    W + +P+     L+  K  +     +  +     +S + NE
Sbjct: 631 GKIDPENGADWNQSAPIDTIPTLEDFKKTVSDYLAWEVSTLLKGKSSEDNE 681


>gi|227892026|ref|ZP_04009831.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
 gi|227866136|gb|EEJ73557.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
          Length = 753

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 123/391 (31%), Gaps = 51/391 (13%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--- 145
           S   S      +   + S  +N    F   D  S I  LE     YK     S I     
Sbjct: 213 SMYMSDELLKAINIQLKSRVNNLSKKFSWIDQFSFIKNLELNLSEYKDI--LSEIHQKIY 270

Query: 146 --HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
               +     V+   Y+  + R G   ++     +TP  +  L   L     D +     
Sbjct: 271 IPFQNEEKQDVLGRAYKIFLSRSGKIDNKNI--ILTPDHIKSLMVKLARLNLDDV----- 323

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP----PILVPHGQELEPETHAVCVAGM 259
                + D   GTGGFL +AM  + +     +            G EL+    A+  + M
Sbjct: 324 -----VLDTCTGTGGFLMEAMEKLNNLAKDDENELEKIREHKLIGFELDSTLFALSCSNM 378

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            +         D   N+    +L K   T K+  +         KW K +    K   N 
Sbjct: 379 FLHG-------DGRSNMLYRDSLLK---TNKKQKFINQKDADLYKWIKKQKPT-KCIINP 427

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              +  P          L                G+  I++ S  L   + G   + + +
Sbjct: 428 PYEKNKPIKFAQQAIDYL-------------EPNGKLIIIMPSPTLTKNQIGKESTSLTK 474

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDLW---TSIR 435
            LL++  ++ ++ +P  +F          I    K   E+  +V   N  +        +
Sbjct: 475 KLLKSARLDYVIKMPLQIFSEQGRTVNTSIFGFTKTPHEKDDEVLFYNLKEDGLISVQHK 534

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
               K    ND + + +  +  S+E  + S+
Sbjct: 535 GRIDKYNKWNDYENQILSAVKNSKEIDRISK 565


>gi|71897760|ref|ZP_00679986.1| Helix-turn-helix motif:Type I restriction-modification system, M
           subunit [Xylella fastidiosa Ann-1]
 gi|71732315|gb|EAO34369.1| Helix-turn-helix motif:Type I restriction-modification system, M
           subunit [Xylella fastidiosa Ann-1]
          Length = 404

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 61/209 (29%), Gaps = 32/209 (15%)

Query: 36  LPFTLLRRLECALEPTRSAVREKY------LAFGGSNIDLESFVKVAGYSFYNTS-EYSL 88
           L    L+RL    +   + + E+Y      L    S+  L  F       +   S   S 
Sbjct: 198 LTLLFLKRLSDVFDDEITRLAEEYGDCATALEIAESDHSLLRFYLPPQARWAVISGRKSF 257

Query: 89  STLGSTNTRNNLESYIASF-----------SDNAKAIFEDFDF--SSTIARLEKAGLLYK 135
           +     + R      I              +     + +  DF       R      L  
Sbjct: 258 NWPLDEDDRPTAPRDIGEHLTKDSRAVVKQNPTLSGVIDIVDFAVERNSERDINPAKLRG 317

Query: 136 ICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           + + FS     L    V    +   Y +L+R+F     + A +F TP     L   +L  
Sbjct: 318 VVETFSDPRYRLGLAHVQPDFLGRAYAYLLRKFTEGSGQSAGEFFTPTKAGFLMAHIL-- 375

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTD 222
                    P      +D  C +GG L  
Sbjct: 376 --------RPKSGDACHDYACDSGGLLIK 396


>gi|325268989|ref|ZP_08135610.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella multiformis DSM 16608]
 gi|324988610|gb|EGC20572.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella multiformis DSM 16608]
          Length = 176

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 20/173 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE       LAN IW   E +   +  ++   VILPFTLLRRL+C LE     + E   
Sbjct: 1   MTE-----QELANVIWDIKEVIRNYYDDSEVEDVILPFTLLRRLDCVLEDKYDVILEALD 55

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFE 116
                     LES ++  G +F+N S  SL  L +      +  ++YI  F+ N K I  
Sbjct: 56  GTPAEMRKYKLESLMRQNGLTFFNLSGLSLRKLLNSPDQIGDAFKTYIEGFTPNVKDILA 115

Query: 117 DF----------DFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNI 158
           +F          D S   ARLE+   L+ +   F    +LHP  V + ++ N 
Sbjct: 116 NFVHEDGDSGIVDLSKIYARLERGNKLFAVVMQFVEKADLHPSKVSNAMVRNF 168


>gi|270668326|ref|ZP_06222521.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270316699|gb|EFA28484.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 149

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 108 SDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLI 163
             + K +F DFD +S        +K   L  + K  + ++    +     +  + YE+LI
Sbjct: 36  EQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDAYEYLI 95

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G  L  A
Sbjct: 96  SNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGSLLLQA 147

Query: 224 MN 225
             
Sbjct: 148 KK 149


>gi|315453300|ref|YP_004073570.1| putative N-6 DNA methylase [Helicobacter felis ATCC 49179]
 gi|315132352|emb|CBY82980.1| putative N-6 DNA methylase [Helicobacter felis ATCC 49179]
          Length = 810

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 140/446 (31%), Gaps = 58/446 (13%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG 131
             K+    F    +          +   +   I     + +  ++D   +   A      
Sbjct: 198 LCKIYDERFTAHDQMVRFRASIDESDEEVSGRINGLFADIQQKYDDV-LNKQDAITFDGK 256

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
            L  +      I +         + + +E  I      +      F TP++VV L   ++
Sbjct: 257 TLKLVVGKLQNICIT--ETDRDSVGDAFEVFIGY---SLKGSQGQFFTPKNVVRLMVEIV 311

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------- 241
                     +P    T+ DP CG+ GFL +++ ++           I            
Sbjct: 312 ----------APDKKHTIIDPACGSCGFLVESLKYLWHTLDETIENEISRAEEKMALAIK 361

Query: 242 -PHGQELEPETHAVCVAGMLIR--RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
              G E +     V  A M I           D  +  +    L+K     + F    SN
Sbjct: 362 NIRGIEKDSFLTKVGKAYMTILGDGKGGIFCEDSLELPKNWGELTKSQIKLENFDISFSN 421

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFGK                +L ++   L K   + S LFL      L+     GGR A
Sbjct: 422 PPFGKDIRVTG--------KDKLAQYALNLNKKEGNVSTLFLERNLQLLK----KGGRLA 469

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTE 416
           I+L  +           +   R  L    IE ++ +P + F    N    + IL     +
Sbjct: 470 IILPETYFHAPS-----TRYVREFLYKHNIEWLIDIPHNTFRPHNNAKCIILILQKDAKQ 524

Query: 417 ERRGKVQLIN-ATDLWTSIRNEGKK----RRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +R      I+ A   +    + GK        + DD    I ++    +  K++  ++  
Sbjct: 525 QR-----FIHMAVAEFAGHDHNGKVIYNADGSVKDDTLTIIDEVKGRVDEKKYTFEVEAH 579

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLAR 497
                 I + R    S  L+   +A 
Sbjct: 580 RVIESDILIPRYFWKSKELEIADIAH 605


>gi|304387519|ref|ZP_07369708.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338406|gb|EFM04527.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 215

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 27/172 (15%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +L    L+ +                 +GG  I+L +           T +  +   
Sbjct: 21  KNYVLTLLFLKYVSDK------------HKYGGGMIELHA---------GTTFDDIVKLK 59

Query: 92  GSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELH 146
            + +  + L   IA  ++  + K + +  DF+         E    L ++   F  + L 
Sbjct: 60  NTADIGDRLNKIIAQIAEANDLKGVIDVTDFNDEDKLGKGKEMIDRLSRLVGIFKKLNLS 119

Query: 147 PDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            +    D ++ + YE+L+R F +E  +    F TP +V  +   ++    D 
Sbjct: 120 SNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISADC 171


>gi|315638462|ref|ZP_07893639.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21]
 gi|315481453|gb|EFU72080.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21]
          Length = 641

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 129/394 (32%), Gaps = 46/394 (11%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L      T     +  +   G N   +  VK     +  +SE ++      +    L   
Sbjct: 163 LRSQFVGTTLLYIKNEVKKRGVNHINDELVKTLKDFWKISSEDAI----RASIERTLSDL 218

Query: 104 IASFSDNAKAI--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +   ++ AK I   +    +   I +L+    +  +    + I  + DT  +     +  
Sbjct: 219 LDGSNNKAKKIELLQKNVLNDQKIKKLKSNDWIEILTTILTDIYKYIDTESEEGQDILNL 278

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             I               TP  +      ++               + + D TCG+G FL
Sbjct: 279 FFIAFNKYTGKADKNQAFTPDHITDFMCRVV----------GVDRTKRVLDITCGSGSFL 328

Query: 221 TDAM----------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
             AM              +     +       +G E+E + + +    MLI         
Sbjct: 329 VQAMVKELSDCKRGKTEKEAKELMEKVKKDNIYGIEVEEKAYGLATTNMLIHG------- 381

Query: 271 DLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           D + NI+ GS   K  F         L NPP+  K     +  + +   G   + G   P
Sbjct: 382 DGNSNIEFGSCFEKKEFIKAANPDIILMNPPYNAKPISIPEYYKNKWSKG--AKEGKEDP 439

Query: 330 KISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 + +L  +  ++      +       + A++L  S     ++      I+  +LE
Sbjct: 440 TKGLVFIQYLSDIIKEINEEREAKNEVRKEVKLAVLLPMSAAIGSKSDI--KNIKEAMLE 497

Query: 384 NDLIEAIVALPTDLFF-RTNIATYLWILSNRKTE 416
           N+ +EA+  LP ++F+   +++    + +  K  
Sbjct: 498 NNTLEAVFTLPAEVFYPGASVSACCMVFTLGKPH 531


>gi|315634181|ref|ZP_07889470.1| type I site-specific deoxyribonuclease [Aggregatibacter segnis ATCC
           33393]
 gi|315477431|gb|EFU68174.1| type I site-specific deoxyribonuclease [Aggregatibacter segnis ATCC
           33393]
          Length = 673

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 124/418 (29%), Gaps = 95/418 (22%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              E     +  K      S  + + ++           E+  +       +N ++S   
Sbjct: 216 DVFEEVFKLIFTKLYDEMQSGRNEKRYL-----------EFRNNGNTEIELKNKIQSLFK 264

Query: 106 SFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             ++  + +F  D     T + L       +  K F+            V+   +E+LI 
Sbjct: 265 KANEKWEGVFSKDAKIQLTPSHLSVCVSSLQDVKLFNS--------NLDVVDEAFEYLIS 316

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +           + TPR ++ +   +L          +P    ++ D   G+ GF    +
Sbjct: 317 K---SSKGEKGQYFTPRYIIDMCVKML----------NPTKDESIIDTASGSCGFPVHTI 363

Query: 225 NHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--- 263
            HV                   +                + + +   V     LI     
Sbjct: 364 FHVWEQILKEEGLHKSHLFTSKEKPIECTDYVTTKVFAIDFDEKAVRVARTLNLIAGDGQ 423

Query: 264 ---LESDPRRDLSKNIQQGSTL-------------------------SKDLFTGKRFHYC 295
              L  +       + + G+T                          S +     +F   
Sbjct: 424 TNVLHLNTLDWERWDEKTGNTKKEIVGDTEWLDTYGEGWKKIRQLRVSNESNRDFKFDIL 483

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF    ++ +   + E      G+    + +     +LF+    + L+     GGR
Sbjct: 484 MANPPFAGDIKESRILAKYELGKKPNGKTQTKVGR----DILFIERNLDFLK----DGGR 535

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
            AIVL           S +  IR ++ E   I A+V L  ++F   T   T +  +  
Sbjct: 536 MAIVLPQGRF----NNSSDKAIREFIAERCRILAVVGLHGNVFKPHTGTKTSVLFVQK 589


>gi|194246429|ref|YP_002004068.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|194246857|ref|YP_002004498.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|193806786|emb|CAP18213.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|193807216|emb|CAP18659.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
          Length = 785

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 115/390 (29%), Gaps = 93/390 (23%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-E 101
           RL   +      + E           + +       +   TS +       TN  NNL  
Sbjct: 217 RLIDDIVKFCKQILEDKQISKDKIQTIVTEYSKYKNNKQLTSPFIKDKKTKTNIPNNLLR 276

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + I   +DN      D  F                                 ++   Y  
Sbjct: 277 NLIDDVNDNILPYIRDNKF--------------------------------DILGKFYTQ 304

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I+   +   +     +TP  +      L+          +      ++DP CGTGGFL 
Sbjct: 305 FIKY--AGGDKKTGLVLTPIHITEFFCDLI----------NIQPNDIVFDPCCGTGGFLV 352

Query: 222 DAMNHVADCGSHHKIPP----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            AM  +     + K       +    G E+ P+  +   + M++R        D   NI 
Sbjct: 353 SAMKAMVQNVKYEKNKQAEIKLNQLIGIEIRPDMFSHVCSNMMMRG-------DGKSNIF 405

Query: 278 QGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            G+    +L      K+ +    NPP+     +++                         
Sbjct: 406 HGNCFDDELIKIVKKKKPNISFLNPPYSNGNAEEQ------------------------- 440

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
               L  + N L     GG   AI   S+ L           I+  L +   ++A++++P
Sbjct: 441 ----LEFIENSLNCLTKGGECVAICQMSTALNTKGLT-----IKERLFQKHTLKAVLSMP 491

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQL 424
            DLF+   +AT + I       +       
Sbjct: 492 EDLFYPVGVATVILIWEAHIPHDSNINTFF 521


>gi|332686988|ref|YP_004456762.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
 gi|332370997|dbj|BAK21953.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
          Length = 139

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 24/138 (17%)

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------K 290
           ++   GQE +   + +    +++  +E +       NI    +L  D   G        +
Sbjct: 9   MVKYFGQEKDATPYRLVRMNLMMHGIEYNDI-----NINHADSLESDWPDGVVDGKDNPR 63

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPP+   W        KE ++    R   G+   +     FL+H    L    
Sbjct: 64  MFSAVMANPPYSAHWNN------KEREDDPRWR-EYGIAPKTKADYAFLLHCLYHL---- 112

Query: 351 NGGGRAAIVLSSSPLFNG 368
              GR AI+L    LF G
Sbjct: 113 EDRGRMAIILPHGVLFRG 130


>gi|313896499|ref|ZP_07830050.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974923|gb|EFR40387.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 798

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 109/396 (27%), Gaps = 104/396 (26%)

Query: 96  TRNNLESYIASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            R   ++Y+ +  D  K  F ED  F        +     +I +      L      D V
Sbjct: 240 ARGIDQAYMQNLFDTTKIEFKEDHLFEDNDEIKIRENSFVQILEKLENYNLS--DTQDDV 297

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
               +E  +    +        F TPR +V   T +L           P     + DPTC
Sbjct: 298 KGIAFEQFLG---TTFRGELGQFFTPRTIVDFMTEIL----------DPQEGEVICDPTC 344

Query: 215 GTGGFLTDAMNHVADCGS------------------------------HHKIPPILVPHG 244
           G+GGFL  A  +V +                                   KI  +     
Sbjct: 345 GSGGFLIKAFEYVREKIEADVRLQKEKLRASLEGNDFDSKLEEEQIEISDKIDAMQTALN 404

Query: 245 QELE----------------------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
            EL+                      P         M++                    L
Sbjct: 405 TELDTSIKESRMYQLSRNCIYGTDANPRMARTSKMNMIM------HGDGHGGVHHHDGLL 458

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------------- 327
           + +    +RF   L+NPPFG+  ++++   E +    E  +                   
Sbjct: 459 NVNGIFEERFDVILTNPPFGQNVDRNQLISEADRFTDEEMKRKYKQKYGKSYDEALKQVD 518

Query: 328 ---------LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                    L  + + S L  +    +       GGR  +VL    L         + +R
Sbjct: 519 DHIGASLLSLYDLGNTSTLTEVLFMERCLRLLKKGGRMGMVLPEGVL----NNKNLATVR 574

Query: 379 RWLLENDLIEAIVALPTDLFFRTN--IATYLWILSN 412
            +      +  I ++P D+F      +   L  +  
Sbjct: 575 EYFEGRAKLILICSIPQDVFIAAGATVKPSLVFMRK 610


>gi|322691181|ref|YP_004220751.1| hypothetical protein BLLJ_0992 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456037|dbj|BAJ66659.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 600

 Score = 84.4 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 96/310 (30%), Gaps = 66/310 (21%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           D     + D   ++T  +              S      +   + VM   +    R    
Sbjct: 214 DILLEEYSDIKMNTTDNQKAIND-FIDWVVEISECVNSNEWRGEDVMGIFFNEFNRY--- 269

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHV 227
           +    +    TP  +      +L    D            + D TCG+GGFL  AM N +
Sbjct: 270 KKKSESGQIFTPEHITDFIYKILEVNMD----------DCVLDATCGSGGFLVKAMANMI 319

Query: 228 ADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + G               +G E + E +A+  A MLI        +D   N++Q  T +
Sbjct: 320 REAGGMETKKAGEIKSKQLYGIEFDREIYALACANMLIH-------KDGKTNLEQMDTRT 372

Query: 284 ---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               +    K     L NPP+  K                                  + 
Sbjct: 373 DAANEWMQSKPITKVLMNPPYENK-------------------------------YGCMT 401

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            + N ++  P    + A +L    L             + +L+N  +  ++ LP DLFF 
Sbjct: 402 IVENVMDSVPAHT-QCAFILPDKKLEKASKAQM-----KRILKNHRLRKVIKLPEDLFFG 455

Query: 401 TNIATYLWIL 410
             + T +++ 
Sbjct: 456 VGVTTSIFVF 465


>gi|269126149|ref|YP_003299519.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268311107|gb|ACY97481.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 691

 Score = 84.4 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 94/276 (34%), Gaps = 48/276 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E L  R+ S        +  P  VV L + L           +   + T+ DP CG+
Sbjct: 166 EVFEFLRERYLSRHRRRV--YEAPPQVVTLVSEL-----------ADSRVHTVLDPACGS 212

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G FL   +          +  P     GQE +     +    + +R             I
Sbjct: 213 GAFLLGMLE---------RPDPPRRLLGQEADEAVARLTAVRLALR--------TPGARI 255

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           + G  L  D F        ++ PPF  +    ++            R+  G P  S   +
Sbjct: 256 RLGDGLRADRFPDAAADLVVTCPPFNDRNWGHEELATD-------PRWRYGPPPRSCSEL 308

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            +  H   +       GG   +++  +           +E    LL    + AI+ALP  
Sbjct: 309 AWAQHALARCRP----GGLVVLLMLPAAALRRAGRRIRAE----LLRRGALRAIIALPPQ 360

Query: 397 LFFRTNIATYLWIL-SNRKTEERRGKVQLINATDLW 431
                 +A ++W+L   R  +   G+V +++ + + 
Sbjct: 361 --AVPGMACHVWVLRRPRPGDRPPGQVLMVDVSGIG 394


>gi|238898226|ref|YP_002923907.1| putative S of type II restriction endonuclease, N6_Mtase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465985|gb|ACQ67759.1| putative S of type II restriction endonuclease, N6_Mtase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 679

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 139/447 (31%), Gaps = 87/447 (19%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I ++       K    K    + ++    +       ++  +    G    +  + 
Sbjct: 300 MTDNINKVINGESQLKRIFTKIVDDLGIYYKIGLATDFTGKLFNEMYSWLGFTQDKLNDV 359

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  V  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 360 VLTPSYVATLLVKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKNSIT 409

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----KNIQQGST 281
                 S           G EL    + + +  M++    S    + +     + + G  
Sbjct: 410 SPEALRSKEIRIKAEQLLGLELLSSVYMLAILNMILMGDGSSNILNKNSLTDFDGKYGFG 469

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            +   F    F   + NPP+  +                               M+F+  
Sbjct: 470 QTDKHFPANAF---VLNPPYSAQGNG----------------------------MVFVEK 498

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-SEIRRWLLENDLIEAIVALPTDLFFR 400
             + +       G AAI++       G AGSG+  EI + +L+   + A + +P DLF  
Sbjct: 499 ALSMM-----NSGYAAIII------QGSAGSGKAKEINQKILKKHTLIASIKMPIDLFIG 547

Query: 401 -TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +++ TY+++    +   R   V+ I+ ++   +  N  K    + D    +        
Sbjct: 548 KSSVQTYIYVFKVGEAHHRDEMVKFIDFSNDGYTRTNRKKASNNLKDTDHAK-------- 599

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              ++  ++D    G  ++ +L                 E+   W +L P+     L   
Sbjct: 600 --ERYQEVIDLVRLGKNKLNILTESEYF-----ENTINPESGADWNQLIPVDTKPTLADF 652

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAK 546
           K  +     +  +    K+       K
Sbjct: 653 KKTVADYLAWEVSNLLKKQGGDDGLGK 679


>gi|157737950|ref|YP_001490634.1| Type I restriction-modification system, M subunit, putative
           [Arcobacter butzleri RM4018]
 gi|157699804|gb|ABV67964.1| Type I restriction-modification system, M subunit, putative
           [Arcobacter butzleri RM4018]
          Length = 771

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 108/416 (25%), Gaps = 124/416 (29%)

Query: 102 SYIASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +Y+    D  K  F +D  F        K     +I +      L      + V    +E
Sbjct: 267 TYLEEKFDGVKNAFKDDGIFEENEKIKIKENSFLEIVQELEIYNLT--ATSEDVKGIAFE 324

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             + R           F TPR +V+    LL          +P     + DP  G+GGFL
Sbjct: 325 TFLGR---TFRGELGQFFTPRVIVNFMVDLL----------NPQANELICDPCAGSGGFL 371

Query: 221 TDAMNHVAD----------------------------------------------CGSHH 234
             A   V +                                                   
Sbjct: 372 IKAFESVKETIDNKYIEIKKKKYNELFPKDIELTEKEQDKKTKLYDSYLAEINKEQEKEI 431

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G +  P    V    M++           +        L+ +     RF  
Sbjct: 432 EQLSKRAIFGTDANPRMARVSKMNMIMHG------DGHNGIHHNDGLLNVNGIFHNRFDV 485

Query: 295 CLSNPPFGKKWEKDKDAVEKE-------------HKNGELGRFGPGLPKISDG------- 334
            L+NPPFG    ++   VE++              K GE   +  G  +  +        
Sbjct: 486 ILTNPPFGTTLSQNSPIVEEDSKYRNDQLIETYIKKYGEELYYKAGFTETFNYANIEHRL 545

Query: 335 --------SMLFLMH----------------------LANKLELPPNGGGRAAIVLSSSP 364
                    M  + H                         +       GGR  IVL    
Sbjct: 546 KAKELYLEKMNQVTHNFGKPIRGLFEVGKSAGQTEVLFIERCLDLLRDGGRMGIVLPEGV 605

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418
           L      S     R +      I  IV+LP ++F  +   + T L  L     +E+
Sbjct: 606 L----NSSNLQNAREYFESRAKILLIVSLPQEIFISSGATVKTSLVFLKKFTADEK 657


>gi|71893975|ref|YP_279421.1| hypothetical protein MHJ_0627 [Mycoplasma hyopneumoniae J]
 gi|71852102|gb|AAZ44710.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 787

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 83/526 (15%), Positives = 165/526 (31%), Gaps = 93/526 (17%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG----I 143
           L ++ + +     +S   +   +     +++ ++ST   ++   L   I +  S     I
Sbjct: 188 LDSIKNASIDQIPDSDNNTNLKSKLQNLQNYLYNSTFKTVDIFELN-NIVELISNVYNLI 246

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +         + N +  + R++ S  ++   +  TP  +  L   L+         +  
Sbjct: 247 NISHKNYKGHDIMNAFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLI---------QVD 297

Query: 204 GMIRTLYDPTCGTGGFLTDAM-----------------NHVADCGSHH--KIPPILVPHG 244
            M   + DPTCG+G FLT+AM                     +  S+   K        G
Sbjct: 298 AMNDVVLDPTCGSGTFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQACKDIKNNKLIG 357

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL      +    ML+         D S NI Q     +      ++   L NPPF +K
Sbjct: 358 IELNEFNATLAGINMLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQK 410

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                                             L  +   LE     G  AAIV   S 
Sbjct: 411 ES-------------------------------ELKFVYVTLENLKEKGKIAAIV-PKSS 438

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL------------- 410
           L      + E   R +++    +  I++LP D+F     + T + +L             
Sbjct: 439 LNGRVKANVEYLKRIFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIKKIQK 496

Query: 411 ---SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                ++ EE    + LI+ +D      NE + +      + +++  I   + +   +  
Sbjct: 497 LASKKKEIEEHTQNIFLIDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQALE 556

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            + R       +     R   I +      ++ +   + LS +     L        +  
Sbjct: 557 RNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYKNI 616

Query: 528 PYGWA--ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
            + +   +  +    K  + +++  K    F         +KD   
Sbjct: 617 KFKFFAIDKILDFISKGKQRQSIDRKLENKFEKGIPIIIAKKDNNG 662


>gi|315653963|ref|ZP_07906879.1| restriction enzyme alpha subunit [Lactobacillus iners ATCC 55195]
 gi|315488659|gb|EFU78305.1| restriction enzyme alpha subunit [Lactobacillus iners ATCC 55195]
          Length = 624

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 112/360 (31%), Gaps = 51/360 (14%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE----- 175
           S  +   + A L Y   +       +         +   + L+  F +  ++        
Sbjct: 243 SKVLDDQDIASLTYDELQKILEFINNNIIPFINDSNTAGQDLLNLFFTTFNKYIGKSDKN 302

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGS 232
              TP  +       +                 + DP  G+G FL  AM    D      
Sbjct: 303 QAFTPDHICDFMCKAV----------GVNKNSRILDPCSGSGAFLVRAMTDAMDDCDTEE 352

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291
             +        G E E     +    MLI         D + N+ Q S   + +    K 
Sbjct: 353 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 405

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-MHLANKLELPP 350
            +  L NPP+       +   + E+             K S+        H    +    
Sbjct: 406 INIVLMNPPYNA----TRKFCDPEYVKS---------WKSSNKEDPSKGFHFVEYVARHI 452

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLW 408
               + A++L         +     + ++ +L+N  +EA+ +LP ++F+   + IA  + 
Sbjct: 453 PANSKIAVLLPMQAAIGTSSEV--KKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMI 510

Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQ------RRQILDIYVSREN 461
              ++K      +       D  +   +  G+  +  +D        + + LD+Y +++ 
Sbjct: 511 FDLSQKHARSNTETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKE 570


>gi|301598198|ref|ZP_07243206.1| putative restriction-modification protein [Acinetobacter baumannii
           AB059]
          Length = 217

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 33/199 (16%)

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G+E+      +    M++         D    I Q  TL   + +   +   ++N PF 
Sbjct: 2   FGREITSN-AKLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFS 51

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +K         K  KN              DG  + ++H           GGR A+V+  
Sbjct: 52  QKTSYSHLYENKLAKN--------------DGDGVCVLHCFK----ATKKGGRMALVVPE 93

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGK 421
             LF     +  + +R++L EN  ++A+V+LP ++F     + T +   +N         
Sbjct: 94  GFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSD 149

Query: 422 VQLINATDLWTSIRNEGKK 440
           V   N T+   S+ +  +K
Sbjct: 150 VFYYNVTNDGLSLDSFRRK 168


>gi|166363242|ref|YP_001655515.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166085615|dbj|BAG00323.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 352

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 86/221 (38%), Gaps = 20/221 (9%)

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
             AG  E ++R+ L+E   ++ ++A+ ++ F+  ++   LW L+  K  E + K+ +I+A
Sbjct: 6   SSAGRDEGKVRQKLIETGTVDIMIAIRSNFFYTRSVPCELWFLNRGKPAELQDKILMIDA 65

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILD-IYVSRENGK--------FSRMLDYRTFGYRRI 478
            +++  +    +     + +Q + IL  +++ R   K        + + +D    G   I
Sbjct: 66  RNIYRKV---NRTINDFSPEQLQNILSIVWLYRSESKRFIDLVVGYCQSIDREYQG--SI 120

Query: 479 KVLRPLRMSFILDKTGLARL-----EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            +L+            L +      E D TW +L    + F  DI K        Y   +
Sbjct: 121 ALLQNYCEHLDKLTEALEKFYNLIDEKDGTWLELRTASELFKDDIDKYAGFAPISYNADD 180

Query: 534 -SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
              + E+++         +             GR   RA+ 
Sbjct: 181 LETLHEAVRCYHEYGEFSRDLGKQADLVNKLLGRAIERAEK 221


>gi|290956158|ref|YP_003487340.1| N-methyltransferase [Streptomyces scabiei 87.22]
 gi|260645684|emb|CBG68775.1| putative N-methyltransferase [Streptomyces scabiei 87.22]
          Length = 539

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 99/288 (34%), Gaps = 45/288 (15%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALF 199
             + L  D +     + + + L  RF   V     +   +PR VV              F
Sbjct: 100 DAVRLARDLIGSGSTAEVVDALAERFTDSVRRAGSDQVTSPR-VVRAV---------RRF 149

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                   TL+DP CG G  L                    + +GQE +  +        
Sbjct: 150 AGEVAGDATLFDPACGIGTLLLAV-----------GPDRGPLRYGQESDARSACFAQ--- 195

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
               L +D    +  +I  G +L  DL+   +    + +PP G      ++ +       
Sbjct: 196 ----LRADLTGRVGVDIGTGDSLRGDLWADVKADLVVCDPPVGDTDWGREELLLD----- 246

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              R+  G P  ++G + +L H         + GGR  +V+ +S  +          IR 
Sbjct: 247 --SRWEFGTPSRAEGELAWLQHAYAH----TSPGGRVLMVMPASVAYRKAG----RRIRA 296

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLIN 426
            L+   ++  + ALP        +  +LW L   +T  +    V++++
Sbjct: 297 ELVRRGILTQVTALPPGTASSHALPVHLWHLRRPRTLGDAVTSVRMVD 344


>gi|296268835|ref|YP_003651467.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296091622|gb|ADG87574.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 675

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 78/235 (33%), Gaps = 50/235 (21%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L  RF    S        P DV  L   L                 ++ DP CG GG
Sbjct: 158 FEFLCERFIEVHSRRLG-LTRP-DVAGLMIRLAA-----------ADAESVLDPACGMGG 204

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A             P +L   GQ++      +    +L+R  ++            
Sbjct: 205 LLLAA-----------GAPRLL---GQDVNHTVAQLAAVRLLLRGRDARIVA-------- 242

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  L  D F G++    + +PPF ++     + V          R+  G+P   +  + +
Sbjct: 243 GDALRGDGFPGEQVDAVVCDPPFNERAWGHAELVGD-------PRWAYGVPPRGESELAW 295

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           + H    +      GG  AI++ S+           S     LL    + A++ L
Sbjct: 296 VQHCLAHVRP----GGLVAILMPSAAAARRSGRRIRS----GLLRAGALRAVITL 342


>gi|315639332|ref|ZP_07894494.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480658|gb|EFU71300.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 463

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 56/261 (21%)

Query: 209 LYDPTCGTGGFLTDAMN--------HVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           + DPTCG+G FLT+AM          + +     K        G E       +    M+
Sbjct: 13  ILDPTCGSGTFLTNAMANMFNEIDPKLENLHETQKNIKQNRLIGIETNEFNATLAGINMM 72

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +    +    +     +  S  +        ++  L NPPF +                 
Sbjct: 73  LHGDGASQIYNADCFERLPSLQNM-------YNRVLMNPPFAQ----------------- 108

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-- 378
                      SD  + F+      +       G  A ++  S +    +G+ E+ +R  
Sbjct: 109 -----------SDIELKFVYETLYYMR----DDGFLATIVPKSCV----SGTIEANVRYL 149

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNE 437
             + +   ++A+++LPT+LF+     T + +L   KT  +  K  LIN   D +  +   
Sbjct: 150 SKIFKIANLKAVISLPTNLFYPVGANTCIIVL--HKTNIKDNKTILINCLNDGFEVVNKA 207

Query: 438 GKKRRIINDDQRRQILDIYVS 458
              +    D  + +IL  Y+ 
Sbjct: 208 RICKNDEWDIIKNEILKAYLK 228


>gi|322514821|ref|ZP_08067840.1| type I site-specific deoxyribonuclease [Actinobacillus ureae ATCC
           25976]
 gi|322119203|gb|EFX91344.1| type I site-specific deoxyribonuclease [Actinobacillus ureae ATCC
           25976]
          Length = 741

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 93/346 (26%), Gaps = 102/346 (29%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +     D V    +E  +    +        F TPR VV   T +L           P  
Sbjct: 257 NLSKTSDDVKGVAFEKFLG---TTFRGELGQFFTPRSVVEFMTEIL----------DPQE 303

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------------------- 242
              + DP  G+GGFL +A  ++ +                                    
Sbjct: 304 GERVCDPCSGSGGFLINAFEYMRESIRQDLEEEKESIKNRYFDEAYEQADEQQKANIEAK 363

Query: 243 -----------------------------HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
                                        +G +  P    V    M++            
Sbjct: 364 VDGLFSELNSELDLDNPNSRLYQLSHNCIYGTDANPRMARVSKMNMIM------HGDGHG 417

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE------------HKNGEL 321
                   L+ +    +RF   L+NPPFG +  KD    +++             K    
Sbjct: 418 GVHHNDGLLNINGIFEERFDVILTNPPFGSRVAKDLKLTQEDSLIDKPHYKNWKAKYENY 477

Query: 322 GRFG-------------PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            R G                 ++S  S L  +    +       GGR  IVL    L NG
Sbjct: 478 ERIGNERKLEIEENKVIVDKFEVSKFSTLTEVMFIERCLKLLRKGGRMGIVLPKGVLNNG 537

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSN 412
                  ++R +      I  I ++P D+F  +   +   +  L  
Sbjct: 538 DL----QKVRHYFESKAKIILITSIPQDVFVASGATVKPSIVFLKR 579


>gi|72080953|ref|YP_288011.1| hypothetical protein MHP7448_0626 [Mycoplasma hyopneumoniae 7448]
 gi|71914077|gb|AAZ53988.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
          Length = 787

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 83/526 (15%), Positives = 164/526 (31%), Gaps = 93/526 (17%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG----I 143
           L ++ + +     +S   +   +     +++ ++ST   ++   L   I +  S     I
Sbjct: 188 LDSIKNASIDQIPDSDNNTNLKSKLQNLQNYLYNSTFKTVDIFELN-NIVELISNVYNLI 246

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +         + N +  + R++ S  ++   +  TP  +  L   L+         +  
Sbjct: 247 NISHKNYKGHDIMNAFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLI---------QVD 297

Query: 204 GMIRTLYDPTCGTGGFLTDAM-----------------NHVADCGSHH--KIPPILVPHG 244
            M   + DPTCG+G FLT+AM                     +  S+   K        G
Sbjct: 298 AMNDVVLDPTCGSGTFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQACKDIKSNKLIG 357

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL      +    ML+         D S NI Q     +      ++   L NPPF +K
Sbjct: 358 IELNEFNATLAGINMLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQK 410

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                                             L  +   LE     G  AAIV  SS 
Sbjct: 411 ES-------------------------------ELKFVYVTLENLKEKGKIAAIVPKSSL 439

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL------------- 410
               +A     E  + +     +  I++LP D+F     + T + +L             
Sbjct: 440 NGRVKAN---VEYLKKIFMMAKVSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIKKIQK 496

Query: 411 ---SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                ++ EE    + LI+ +D      NE + +      + +++  I   + +   +  
Sbjct: 497 LASKKKEIEEHTQNIFLIDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQALK 556

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            + R       +     R   I +      ++ +   + LS +     L        +  
Sbjct: 557 RNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYKNI 616

Query: 528 PYGWA--ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
            + +   +  +    K  + +++  K    F         +KD   
Sbjct: 617 KFKFFAVDKILDFISKGKQRQSIDRKLENKFEKGIPIIIAKKDNNG 662


>gi|168210993|ref|ZP_02636618.1| type IIS restriction enzyme M protein [Clostridium perfringens B
           str. ATCC 3626]
 gi|170710963|gb|EDT23145.1| type IIS restriction enzyme M protein [Clostridium perfringens B
           str. ATCC 3626]
          Length = 683

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 134/426 (31%), Gaps = 79/426 (18%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I ++       K    K    + ++    +       ++  +    G    +  + 
Sbjct: 303 LTDNINKVTNGESQLKRVFSKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFTQDKLNDV 362

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  V  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 363 VLTPSYVATLLVKLARVNMDSY----------VWDFATGSAGLLVAAMNEMLIDAKEKIK 412

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSK 284
              +    +         G E+    + + +  M++     S+     S N   G+    
Sbjct: 413 SPEELEQKNIKIKAEQLLGLEVLSSIYMLAILNMILMGDGSSNILNRDSLNDFNGNYGFG 472

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                      + NPP+                                  M+F+    +
Sbjct: 473 KTEKKFPATAFILNPPYSADGNG----------------------------MVFVEKALS 504

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
            +     G G A+I++ +S    G   + E   R  +L+ + + A + +P DLF   +++
Sbjct: 505 MM-----GKGYASIIIQNSA---GSGKAIEYNKR--ILKKNTLLASIKMPIDLFVGKSSV 554

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T +++    +  ++   V+ I+ ++   +  N  K    + D  R +           +
Sbjct: 555 QTNIYVFRVAEPHQKDDIVKFIDFSNDGYTRTNRKKASNNLKDTDRAK----------ER 604

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +  ++D   +G  ++ +             G    E    W + +P+ +   ++  K  +
Sbjct: 605 YKEVVDLVRYGKSKLNIFTEQEY-----YEGTIDPENGADWNQSAPIDKKPKIEDFKKTV 659

Query: 524 QQIYPY 529
                +
Sbjct: 660 SDYLAW 665


>gi|91205673|ref|YP_538028.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91069217|gb|ABE04939.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 540

 Score = 83.7 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 145/429 (33%), Gaps = 44/429 (10%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQEL 247
           ++   + + ++       + DP CG G FL + +    D        KI P +   G + 
Sbjct: 3   VVRAIEMIIQDEIREEAVICDPACGVGKFLLEPIKSKIDRFYKIKDGKIIPKITIRGFDK 62

Query: 248 -----EPETHAVCVAGMLI-----------RRLESDPRRDLSKNIQQGSTLSKDLFT-GK 290
                E +T  +  A MLI              E     + +  ++  S L         
Sbjct: 63  GFGNNEQKTIILAKANMLIYFSEVIKNYPNHTKEFADLFNSTFTLKTDSILGTLKDPVEN 122

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   L+NPP+      +    E+  KN +L ++        +G  LF+  +   L+   
Sbjct: 123 TYDLILTNPPYVTDGSSNFK--EEIQKNNDLKKYYKINAMGVEG--LFMEWIIRALKP-- 176

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+A I++             +  +R +L +   I+ I++LP + FF T   TY+  +
Sbjct: 177 --NGKAFIIVPDGIFNR----QNDRNLRAFLCQECFIDGIISLPENTFFTTKQKTYILCI 230

Query: 411 SNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           + +  KT+ +   V     +++  S   +  +  I  +D    I  +Y   +  K  +  
Sbjct: 231 TKKNNKTDIQSDPVFTYLVSEIGES--RDVYRFDIEQNDLIEAIT-LYNFFKGNK--KAF 285

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           +      R   V      S I         + +     +   +++  +      +  +  
Sbjct: 286 ENINTDPRCKIVPIEKFESEIYWSIDRWWSKEEKITLGIEKENKTLSVLEFSSYLSCMAD 345

Query: 529 YGWAESFVKESIK-SNEAKTLKVKASK----SFIVAFINAFGRKDPRADPVTDVNGEWIP 583
                S   + IK  N  +T KVK         I     +F   +    PV     E  P
Sbjct: 346 TLENFSLGLKKIKIVNNNQTKKVKIGNIFDFPAIKGITKSFIESNKGNIPVYGGKKEQEP 405

Query: 584 DTNLTEYEN 592
              + +   
Sbjct: 406 IGYIKDNIK 414


>gi|312874784|ref|ZP_07734803.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|311089529|gb|EFQ47954.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
          Length = 624

 Score = 83.7 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 112/360 (31%), Gaps = 51/360 (14%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE----- 175
           S  +   + A L Y   +       +         +   + L+  F +  ++        
Sbjct: 243 SKVLDDQDIASLTYDELQKILEFINNNIIPFINDSNTAGQDLLNLFFTTFNKYIGKSDKN 302

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGS 232
              TP  +       +                 + DP  G+G FL  AM    D      
Sbjct: 303 QAFTPDHICDFMCKAV----------GVNKNSRILDPCSGSGAFLVRAMTDAMDDCDTEE 352

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291
             +        G E E     +    MLI         D + N+ Q S   + +    K 
Sbjct: 353 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 405

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-MHLANKLELPP 350
            +  L NPP+       +   + E+             K S+        H    +    
Sbjct: 406 INIVLMNPPYNA----TRKFCDPEYVKS---------WKSSNKEDPSKGFHFVEYVARHI 452

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLW 408
               + A++L         +     + ++ +L+N  +EA+ +LP ++F+   + IA  + 
Sbjct: 453 PANSKIAVLLPMQAAIGTSSEV--KKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMI 510

Query: 409 ILSNRKTEERRGKVQL-INATDLWTSIRNEGKKRRIINDDQ------RRQILDIYVSREN 461
              ++K      +        D +   +  G+  +  +D        + + LD+Y +++ 
Sbjct: 511 FDLSQKHARSNTETFFGYFKEDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKE 570


>gi|325677722|ref|ZP_08157372.1| hypothetical protein CUS_4267 [Ruminococcus albus 8]
 gi|324110583|gb|EGC04749.1| hypothetical protein CUS_4267 [Ruminococcus albus 8]
          Length = 114

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++   FIW  A  L G ++   +  VI+P  ++RR ECALE T+ AV E+Y         
Sbjct: 18  STEVGFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYKK--NPAYP 75

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIA 105
            ++  +V+ Y F+NTSEY+L+ L     +   N  +YI 
Sbjct: 76  AKAMCRVSRYQFFNTSEYTLAELVNDPDHLAANFRNYIE 114


>gi|309808437|ref|ZP_07702336.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168265|gb|EFO70384.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 329

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 46/302 (15%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---C 230
                TP  +       +                 + DP  G+G FL  AM    D    
Sbjct: 6   KNQAFTPDHICDFMCKAV----------GVNKNSRILDPCSGSGAFLVRAMTDAMDDCDT 55

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG 289
               +        G E E     +    MLI         D + N+ Q S   + +    
Sbjct: 56  EEEREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKD 108

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-MHLANKLEL 348
           K  +  L NPP+       +   + E+             K S+        H    +  
Sbjct: 109 KNINIVLMNPPYNA----TRKFCDPEYVKS---------WKSSNKEDPSKGFHFVEYVAR 155

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATY 406
                 + A++L         +     + ++ +L+N  +EA+ +LP ++F+   + IA  
Sbjct: 156 HIPANSKIAVLLPMQAAIGTSSEV--KKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACC 213

Query: 407 LWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQ------RRQILDIYVSR 459
           +    ++K      +       D  +   +  G+  +  +D        + + LD+Y ++
Sbjct: 214 MIFDLSQKHARSNTETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNK 273

Query: 460 EN 461
           + 
Sbjct: 274 KE 275


>gi|241758670|ref|ZP_04756784.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114]
 gi|241321181|gb|EER57377.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114]
          Length = 692

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/391 (14%), Positives = 121/391 (30%), Gaps = 78/391 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                ++  +    G    +  +  +TP  V  L   L     D+           ++D 
Sbjct: 348 DFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLAKLARVNKDSY----------VWDF 397

Query: 213 TCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             G+ G L  AMN +            +              G EL    + + +  M++
Sbjct: 398 ATGSAGLLVAAMNEMLIDAKNSISSPEELRKKEAQIKAGQLLGLELLSNVYMLAILNMIL 457

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              +         ++           T  +F     + NPP+                  
Sbjct: 458 MG-DGSSNILNKDSLTDFDGKYGFGKTDHKFPADAFILNPPYSASGNG------------ 504

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           M F+    + +E      G AAI++ +S            EI R
Sbjct: 505 ----------------MNFVERALSMME-----KGYAAIIIQNSA-----GSGKAREINR 538

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+N+ + A + +P DLF   +++ T +++    +  E+   V+ I+ +D   +  N  
Sbjct: 539 RILQNNTLFASIKMPLDLFIGKSSVQTNIYVFKVGEPHEKDETVKFIDFSDDGYTRTNRK 598

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           K    + D    +          G++  ++    FG +++ +             G    
Sbjct: 599 KASNNLKDTGNAR----------GRYEELVQLVRFGKKKLNIFSEKEY-----YEGTIDP 643

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
           +    W + +P+     LD  K  +     +
Sbjct: 644 KNGADWNQTAPIDTKPTLDDFKKTVSDYLAW 674


>gi|159027015|emb|CAO86735.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 678

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/441 (13%), Positives = 133/441 (30%), Gaps = 77/441 (17%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I ++E      K    K    + ++    +       ++  +    G    +  + 
Sbjct: 298 LTENINKVENGESQLKRVFSKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDV 357

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  +  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 358 VLTPSYIATLLVKLARVNKDSY----------VWDFAAGSAGLLVAAMNEMLVDAKNNIT 407

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              +              G EL    + + +  M++                 GS+   +
Sbjct: 408 SPQELTQKEIKIRTEQLLGLELLSSVYMLAILNMILMG--------------DGSSNILN 453

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             + K F     N  FG+   K     +    N      G G+  +              
Sbjct: 454 KDSIKDFD---GNYGFGQTNSKF--PADAFVLNPPYSANGNGMNFVEKA----------- 497

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
             L     G AAI++ +S            E  + +LE   + A + +P DLF   +++ 
Sbjct: 498 --LGMMNKGYAAIIIQNSAGSGRA-----KEYNKKILEKHTLLASIKMPIDLFIGKSSVQ 550

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T +++    +   +   V+ I+ ++   +  N  K    + D    +           ++
Sbjct: 551 TNIYVFKVNEKHHKDEIVKFIDFSNDGYTRTNRKKSSNNLKDTDCAK----------ERY 600

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +++   FG  ++ +             G    +    W + +P+     L   K  + 
Sbjct: 601 EELVNLVRFGKSKLNIFTEKEY-----YEGTIDPKNGSDWNQTAPIDTKPTLQDFKKTVS 655

Query: 525 QIYPYGWAESFVKESIKSNEA 545
               +  +    ++S +    
Sbjct: 656 DYLAWEVSNILRQQSTEEERL 676


>gi|310287718|ref|YP_003938976.1| N-6 DNA methylase [Bifidobacterium bifidum S17]
 gi|309251654|gb|ADO53402.1| putative N-6 DNA methylase [Bifidobacterium bifidum S17]
          Length = 843

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 140/410 (34%), Gaps = 57/410 (13%)

Query: 21  DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80
           DL       D            R +  L+   + +         +N  +           
Sbjct: 179 DLLNHIVANDSKS--------TRADDRLDNMCNMLL--LKMDSDTNGKMAQ--DPKEPLD 226

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           +      + T    NT  N E Y+A +      +FED    +     E    +    +  
Sbjct: 227 FQVCPTPVETAKRINT--NFERYMAKYPF----LFEDTSTKTIKFDDETIHAIVYWLQGI 280

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +       +     +S  ++       + V +G   + TP+ ++  A  L+         
Sbjct: 281 N-----LKSAAPETLSTAFQVFRS---ANVKQGEGQYFTPQRIIESAVKLM--------- 323

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILVPHGQELEPETHAVC 255
                   + DP CGTGGFL +  + +      +     +       +G +L+     + 
Sbjct: 324 -EIDYHDKVIDPACGTGGFLFETYSTLLKRASGEQRDEIRTWAHRNLYGVDLDSINVKLA 382

Query: 256 VAGMLIRR------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KD 308
            A M+  R      +  D  R+         T      T   +   L+NPPFG++ + + 
Sbjct: 383 RALMIGARDGSTNIVLGDSLREQKWQDFPMLTPVLGRETDGSYDVVLTNPPFGERLKIRA 442

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            DA + ++   +    G    K SD  + L  M  A +L     GGGR  IVL  +  F+
Sbjct: 443 TDAKQAKYSICQHTSGGYPSDKYSDTELGLVFMERAYRLLA---GGGRLGIVLPETYFFS 499

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTE 416
               S     R+W+  +  + A++ +P + F       T  +++  + T+
Sbjct: 500 ----SSYQWFRKWVSRHFDVLAVMNIPMEAFQGFCRAKTNFYVMRKKSTK 545


>gi|67459769|ref|YP_247393.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005302|gb|AAY62228.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
          Length = 159

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 10/165 (6%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
              +++  +          ++    +S       +F    +N PF +   K      K  
Sbjct: 1   MNTVLQGYDGHSEIQQIDTLRNPYYISSKTSQQLKFDIIATNMPFSQTITKKTIKNGKTI 60

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
               +          ++G    ++H    L+      GR A+V+    LF     S    
Sbjct: 61  TENHIAPLYYNGIAKNNGDAACVLHCLQNLK----ESGRMALVVPEGFLFRKDTSS---- 112

Query: 377 IRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN-RKTEERR 419
           +R++LL    ++ +++LP   F   T + T +   ++  K ++++
Sbjct: 113 VRQFLLSKAKLQLVISLPQSTFLPYTGVKTSILYFTDAHKPDKQK 157


>gi|312601569|gb|ADQ90824.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168]
          Length = 785

 Score = 83.3 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 85/526 (16%), Positives = 164/526 (31%), Gaps = 93/526 (17%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG----I 143
           L ++ + +     +S   +   +     +++ ++ST   ++   L   I +  S     I
Sbjct: 186 LDSIKNASIDQIPDSDNNTNLKSKLQNLQNYLYNSTFKTVDIFELN-NIVELISNVYNLI 244

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +         + N +  + R++ S  ++   +  TP  +  L   L+         +  
Sbjct: 245 NISHKNYKGHDIMNAFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLI---------QVD 295

Query: 204 GMIRTLYDPTCGTGGFLTDAM-NHVADCGSHH------------------KIPPILVPHG 244
            M   + DPTCG+G FLT+AM N   D  S                    K        G
Sbjct: 296 AMNDVVLDPTCGSGTFLTNAMANMFQDVHSFFKSKKLSKEKEEQYSNQACKDIKNNKLIG 355

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL      +    ML+         D S NI Q     +      ++   L NPPF +K
Sbjct: 356 IELNEFNATLAGINMLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQK 408

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                                             L  +   LE     G  AAIV  SS 
Sbjct: 409 ES-------------------------------ELKFVYVTLENLKEKGKIAAIVPKSSL 437

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL------------- 410
               +A     E  + +     +  I++LP D+F     + T + +L             
Sbjct: 438 NGRVKAN---VEYLKKIFMMAKVSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIKKIQK 494

Query: 411 ---SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                ++ EE    + LI+ +D      NE + +      + +++  I   + +   +  
Sbjct: 495 LASKKKEIEEHTQNIFLIDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQALK 554

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            + R       +     R   I +      ++ +   + LS +     L        +  
Sbjct: 555 RNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYKNI 614

Query: 528 PYGWA--ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
            + +   +  +    K  + +++  K    F         +KD   
Sbjct: 615 KFKFFAVDKILDFISKGKQRQSIDRKLENKFEKGIPIIIAKKDNNG 660


>gi|330937292|gb|EGH41303.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 199

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EK 58
           ++      +W  A  L G     ++   +L    L+ +    +     ++        E 
Sbjct: 2   TSEEFKKTLWDTANKLRGSVSAAEYKYPVLGLVFLKYVSDLYDTQAGVIQDRLADPSSEL 61

Query: 59  YLAFGGSNIDLESFVKVAG------YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           Y+       +  +              F+  +E    TL  +    N     A   D A 
Sbjct: 62  YIEDAELRAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANF----AQLLDKAM 117

Query: 113 AIFEDFDFS------STIARLE-KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIR 164
            + E  + S         +RLE + G L ++ +  + ++  P       V   +YE+ + 
Sbjct: 118 GLIESENLSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLG 177

Query: 165 RFGSEVSEGAEDFMTPRDV 183
           +        A+    PR V
Sbjct: 178 QCALNEG-PAQASSIPRKV 195


>gi|251772061|gb|EES52631.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 784

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 77/490 (15%), Positives = 146/490 (29%), Gaps = 118/490 (24%)

Query: 16  WKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
           W   + +  D   ++      +IL        +  L      V E+      +       
Sbjct: 184 WTIDDLIRHDKLVSERKSLKDLILEME-----DEVLANAGVDVFEELFKLIFT-----KL 233

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
                              G T T   L++ I    + AK  +E   FS           
Sbjct: 234 YDEMEGGRDRKRHLVFKNYGDTETE--LKTKIQKLFNQAKTRWEGV-FSDGANIELTPSH 290

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L     +  G++L    +   V+   +E+LI +           + TPR ++ +   +L 
Sbjct: 291 LAVCVASLEGVKLFNSNLE--VVDEAFEYLINK---SSKGEKGQYFTPRYIIDMCVKML- 344

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP--- 249
                    +P    TL DP  G+ GF   A+ HV +     +          E +P   
Sbjct: 345 ---------NPQKHETLIDPAAGSCGFPVHAIFHVWESILQEECLDKSHLFTIEKKPVQC 395

Query: 250 ------ETHAV----------CVAGML--------IRRLESDPRRDLSKNIQQGSTL--- 282
                 +  A+              ++        +     D  R   K +++       
Sbjct: 396 EDYVHEKVFAIDFDEKAVRVGRTLNLIAGDGQTNVLHLNTLDYERWNEKTVEEAWLDVYG 455

Query: 283 -----------SKDLFTGKRFHYCLSNPPFGKKWE-------------------KDKDAV 312
                      +K+     +F   ++NPPF    +                   K+ D  
Sbjct: 456 EGWKRLRKLRAAKNENRDFQFDIVMANPPFAGDIKETRILAKYDLASTVSLDKVKNVDPT 515

Query: 313 EKEHKN--GELGRFGPG-------LPKISDGSML------------FLMHLANKLELPPN 351
           +K   +       F          + K++DG+               ++ +   L+    
Sbjct: 516 DKNIVDAPDRTPTFPEALNASPTVIYKMADGTYRKIKVKHQHKVGRDILFIERNLQFIKP 575

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GGR AIVL           +G+  +R ++ E+  I A+V L  ++F   T   T +  +
Sbjct: 576 -GGRMAIVLPQGRF----NNAGDKPLREYIAEHCRILAVVGLHGNVFKPHTGTKTSVLFV 630

Query: 411 SNRKTEERRG 420
                +  +G
Sbjct: 631 QRWNDDPTKG 640


>gi|34557965|ref|NP_907780.1| DNA methylase-type I restriction-modification system [Wolinella
           succinogenes DSM 1740]
 gi|34483683|emb|CAE10680.1| DNA METHYLASE-TYPE I RESTRICTION-MODIFICATION SYSTEM [Wolinella
           succinogenes]
          Length = 1073

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 140/449 (31%), Gaps = 102/449 (22%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
               SL N I    +++  +     F + +     ++  +      + +   ++  +G S
Sbjct: 131 TQRRSLKNIILDMEDEVLANAGVDVFEE-VFKLVFIKLFDELQNTRKLSTHLEFRNYGES 189

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + +L    KV     +  ++     +               F+D+ K          T +
Sbjct: 190 DSEL----KVKIEEIFAKAKKQWGGI---------------FNDDEKIRL-------TPS 223

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L       +  K F+    + D + D      +E+L+ +           + TPR V+ 
Sbjct: 224 HLSVCVSSLQDVKLFNS---NLDVIDD-----AFEYLVNK---TSKGEKGQYFTPRYVID 272

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-----NHVADCG--------S 232
           +   +L          +P    T+ D   G+ GF    +         D G        +
Sbjct: 273 MCVKML----------NPQEEETMIDTASGSCGFPIHTVFEVWRKIYKDLGIEESHLFTA 322

Query: 233 HHKIPPIL-----VPHGQELEPETHAVCVAGMLIRR-----------LESDPRRDLSKNI 276
             K    L        G + + ++  V     +I             L+     + +K+ 
Sbjct: 323 EKKHERALEYVREKVFGIDFDDKSVRVSRMLNIIAGDGHTNVLNLNSLDFSRWEETTKDE 382

Query: 277 QQGSTLSKDLFTGKR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                        K+            F   ++NPPF    ++ +   + E      G+F
Sbjct: 383 SWQDIYFDGWRRLKKLRSDKNSDKAYEFDIVMANPPFAGDIKESRILHQYELGKNASGKF 442

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              + +     +LF+      L+     GGR A+VL           S +  IR ++   
Sbjct: 443 QTKVGR----DILFIERNLEMLK----SGGRMAVVLPQGRF----NNSSDKYIRDFIASK 490

Query: 385 DLIEAIVALPTDLF-FRTNIATYLWILSN 412
             I A+V L  ++F   T   T +  +  
Sbjct: 491 CRILAVVGLHGNVFKPHTGTKTSVLFVQK 519


>gi|303237597|ref|ZP_07324159.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
 gi|302482230|gb|EFL45263.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
          Length = 681

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 132/413 (31%), Gaps = 85/413 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                ++  +    G    +  +  +TP  V  L   L     D+           ++D 
Sbjct: 337 DFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVATLLVKLARVNKDSY----------VWDF 386

Query: 213 TCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             G+ G L  AMN +            +              G EL P  + + +  M++
Sbjct: 387 ATGSAGLLVAAMNEMLVDAKNNIDSPNELAKKEARIKAEQLLGIELLPSVYMLAILNMIL 446

Query: 262 RRLESDPRRDLS----KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               S    +       + + G    K+ F    F   + NPP+                
Sbjct: 447 MGDGSSNILNKDSLKDFDGKYGYGKPKEQFPADAF---VLNPPYSSLGNG---------- 493

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                             M F+    + ++      G AAI++ SS    G   + E   
Sbjct: 494 ------------------MNFVEKALSMMQR-----GYAAIIIQSSA---GSGRATEYNK 527

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R  +L+ + + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   +  N
Sbjct: 528 R--ILKRNTLLASIKMPIDLFIGKSSVQTNIYVFRINEAHKKDDVVKFIDFSNDGYTRTN 585

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
             K    + D    +           ++  +++   FG  ++ +L            G  
Sbjct: 586 RKKASVNLKDTDHAK----------ERYEEIVNLVRFGKSKLNILTEKEY-----YEGTI 630

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
              +   W + +P+     L   K   + +  Y   E       K+NE  +L 
Sbjct: 631 DPNSGADWNQTAPIDTKPTLADFK---KTVSDYLAWEVSNLLKQKANEEDSLG 680


>gi|220918152|ref|YP_002493456.1| protein of unknown function DUF450 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956006|gb|ACL66390.1| protein of unknown function DUF450 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 950

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 104/346 (30%), Gaps = 96/346 (27%)

Query: 150 VPDRVMSNIYEHLIRR-------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           +P  V+ + YE  + +                 V +    F TP  VV     ++     
Sbjct: 316 MPLDVLGHAYEQFLGKHLRLTPTRRVRIEEKPLVRKAGGVFYTPDVVVAFIIRVVFAGAL 375

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------------------------ 232
                S  +   + DP CG+G FLT A + +    S                        
Sbjct: 376 DGRTTSRPL--RILDPACGSGSFLTSAFDALLRNRSGAPGAAPSRTAGIEDTSSSPLGVS 433

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQ 277
             K       +G +++P    V    +L+R ++ +                  DLS NI+
Sbjct: 434 EKKRLLTTHLYGVDIDPHAVEVAKLSLLLRVVDGESGASLKAAYDSSNEKALPDLSPNIK 493

Query: 278 QGS----------------------------TLSKDLFTGK--RFHYCLSNPPFGKKWEK 307
            G+                            T   D+F G+   F   ++NPP+      
Sbjct: 494 CGNSLVASDYFGLRLTASAEETCSVNAFDWQTAFPDVFQGEDPGFDVIVANPPYVSLQSG 553

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                  E+       F          + LF M +   L L     G   +++ ++ L N
Sbjct: 554 FLAPALLEYLQSHYESFDG-------IADLFAMFVERALGLLSEH-GVCGMIVPTTLLMN 605

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                    +R+ LL+   +  ++ L   +F    + T + +    
Sbjct: 606 RS----FQRLRKLLLKKATLTHVIDLGDGVFRDAVVPTCIIVFRKG 647


>gi|182419440|ref|ZP_02950692.1| N-6 DNA methylase [Clostridium butyricum 5521]
 gi|237666688|ref|ZP_04526673.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376771|gb|EDT74343.1| N-6 DNA methylase [Clostridium butyricum 5521]
 gi|237657887|gb|EEP55442.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 642

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 110/361 (30%), Gaps = 52/361 (14%)

Query: 88  LSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
            S +     R  +ES + +    S+N     E    +    +  K        K    I 
Sbjct: 200 WSMMDEKQIRAAIESTLTNLLDGSENKTKKVELLQKNVLNDQKVKKLNTSNWIKILDTIL 259

Query: 145 LHPDTVPDRVMS---NIYEHLIRRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFK 200
           +      D   S   +I       F     +       TP  +      L          
Sbjct: 260 MDIYKYIDADSSEGQDILNLFFIAFNKYTGKADKNQAFTPDHITDFMCRLT--------- 310

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAM----------NHVADCGSHHKIPPILVPHGQELEPE 250
                 + + D TCG+G FL  AM              +     KI      +G E+E +
Sbjct: 311 -EVDRTKVVLDATCGSGSFLVQAMVKELADCRRGKTEDETKKLQKIVKEEHIYGIEVEEK 369

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            + +    MLI    +   +  S    +      +          L NPP+  K      
Sbjct: 370 AYGLATTNMLIHGDGNSNIKFKSCFDCEDFIKQANP------DVILMNPPYNAKPIG--- 420

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP----------PNGGGRAAIVL 360
            + K++K     +   G    + G  L  +H  + +             P    + A++L
Sbjct: 421 -IPKKYKTNWTAKAKDGKEDPTKG--LVFIHFLSDVIQKMNEEREQNNQPKKTVKLAVLL 477

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERR 419
             S      +   + +I   +LEN+ +EA+  LP ++F+   +      + +  +   + 
Sbjct: 478 PVSAAIGTSSIITDEKI--AMLENNTLEAVFTLPNEIFYPGASACACCMLFTLGQPHIKA 535

Query: 420 G 420
            
Sbjct: 536 D 536


>gi|146291265|ref|YP_001181689.1| site-specific DNA-methyltransferase, type I modification
           [Shewanella putrefaciens CN-32]
 gi|145562955|gb|ABP73890.1| site-specific DNA-methyltransferase, type I modification
           [Shewanella putrefaciens CN-32]
          Length = 234

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 70/240 (29%), Gaps = 46/240 (19%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M +        L + +W  A+ L        +   +L    ++ +  A +  +  ++   
Sbjct: 1   MNQQEQQFLKELESKLWTAADKLRSTLDAAQYKYAVLGLIFVKYVSDAFKLRQEEIKADL 60

Query: 57  ---------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
                          E+ LA   +    +         F+  +E     L     R    
Sbjct: 61  ANPDHEYYLDPADFSEEELAAEIAVELEQRDFYTEKNVFWLPTESRWQFLQDNGPRVIGG 120

Query: 102 SYIA------------SFSDNAKAIFEDFD------FSSTIARLE-KAGLLYKICKNFSG 142
           + +                DNA    E  +       + + + L+     L ++    + 
Sbjct: 121 ADLEIDGKVKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSALKIDQAKLNELINLIAT 180

Query: 143 IEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           I   H       ++ ++YE+++ +F     +    F        + ++L    +  L K 
Sbjct: 181 IPFDHKSLNSKDILGHVYEYMLGQFALAEGKKGGQFY-------IMSSLFFTNESHLKKP 233


>gi|182624917|ref|ZP_02952696.1| type IIS restriction enzyme M protein [Clostridium perfringens D
           str. JGS1721]
 gi|177909923|gb|EDT72333.1| type IIS restriction enzyme M protein [Clostridium perfringens D
           str. JGS1721]
          Length = 683

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 134/426 (31%), Gaps = 79/426 (18%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I ++       K    K    + ++    +       ++  +    G    +  + 
Sbjct: 303 LTDNINKVTNGESQLKRVFSKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFTQDKLNDV 362

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  V  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 363 VLTPSYVATLLVKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKEKIK 412

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSK 284
              +    +         G E+    + + +  M++     S+     S N   G+    
Sbjct: 413 SPEELEQKNLKIKAEQLLGLEVLSSIYMLAILNMILMGDGSSNILNRDSLNDFNGNYGFG 472

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                      + NPP+                                  M+F+    +
Sbjct: 473 KTDEKFPATAFILNPPYSADGNG----------------------------MVFVEKALS 504

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
            +E      G A+I++ +S    G   + E   R  +L+N+ + A + +P DLF   +++
Sbjct: 505 MME-----KGYASIIIQNSA---GSGKAIEYNKR--ILKNNTLLASIKMPIDLFIGKSSV 554

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T +++    +  ++   V+ I+ ++   +  N  K    + D  R +           +
Sbjct: 555 QTNIYVFRVAEPHQKDEIVKFIDFSNDGYTRTNRKKASNNLRDTDRAK----------ER 604

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +  ++D   +G  ++ +             G    E    W + +P+     L+  K  +
Sbjct: 605 YQEVVDLVRYGKSKLNIFTEKEY-----YEGTIDPENGADWNQSAPIDTKPKLEDFKKTV 659

Query: 524 QQIYPY 529
                +
Sbjct: 660 SDYLAW 665


>gi|227485430|ref|ZP_03915746.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236560|gb|EEI86575.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 642

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 130/427 (30%), Gaps = 59/427 (13%)

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIARLEKAGLL 133
           V    F    + ++  L    + N     I S  +  + + +  D     I  L+K  L 
Sbjct: 182 VKQRGFITIDDKAVEELRDYWSYNKPSGIIGSIKETLENLLDGSDNKAKKIELLQKNVLN 241

Query: 134 YKICKNFS-------------GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            +  K                 I  + D   D     +    I        +      TP
Sbjct: 242 NQKVKALDIKDWVGILSYILENIYAYIDEDSDEGQDILNLFFIAFNKYTGKDDKNQAFTP 301

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGSHHKIPPI 239
             +      +                + ++D  CG+G FL  AM   +ADC         
Sbjct: 302 DHITEFMCRIT----------EVDRYKRVFDGACGSGSFLVQAMVKELADCDKARITDAE 351

Query: 240 LVP----------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G E+E     +    MLI    +   +  S         S++ F  
Sbjct: 352 KQILKENIKKNNIYGVEIEETAFGLSTTNMLIHGDGNSNIKLASLFD------SEEFFIE 405

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
                 L NPP+  K        +   K  ++   G   P        F+     K+ + 
Sbjct: 406 ANPDIVLMNPPYNAKPRTIPGKYKIGWKPNQI--NGKEDPSKGFSFAEFISDCVKKININ 463

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEI----RRWLLENDLIEAIVALPTDLFF-RTNIA 404
               G+A   +  + L    A  G + I    +  +LE++ +EA+  LP ++F+   +++
Sbjct: 464 RVNDGKAKKEVKLAILLPVSAAIGSNNILKSAKEKMLEDNTLEAVFTLPNEVFYPGASVS 523

Query: 405 TYLWILSNRKTEERRG----KVQLINATDLWTSIRNEGKKRRIINDDQR---RQI----L 453
               + +  +          +       D     R    +    + +     ++I    L
Sbjct: 524 ACCMVFTLGRPHISADGSIRETFFGYYKDDGFIKRKNLGRVEQFSKEDESLWKKIEEKWL 583

Query: 454 DIYVSRE 460
           D+Y +++
Sbjct: 584 DLYRNKK 590


>gi|317473783|ref|ZP_07933064.1| type I restriction modification DNA specificity domain-containing
           protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316910040|gb|EFV31713.1| type I restriction modification DNA specificity domain-containing
           protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1249

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 106/562 (18%), Positives = 185/562 (32%), Gaps = 77/562 (13%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
            L    S   +K+L    S+ + E F K       +T +Y L  +       N E  I  
Sbjct: 286 RLTDLYSKGMKKFLDRTVSDFNNEDFDKRCANLNEDTKQYLLREVNKLRLEKNNEFAIKE 345

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
             DNA   FE           E A ++ ++ +   G  +  +      +S+ +E L+   
Sbjct: 346 VYDNA--SFE-----------ENAKVVKEVVELIQGYRIRYNKRQQY-LSDFFELLL--- 388

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---LYDPTCGTGGFLTDA 223
            + + + A  + TP  +       L        K S         + D   G+G F+T+ 
Sbjct: 389 TTGLKQEAGQYFTPVPIAQFIIKSLPLDSIMAEKLSRKDGEILPYMIDYAAGSGHFITEF 448

Query: 224 M-------------NHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           M              ++ +   H       H        +G E +     V   G  +  
Sbjct: 449 MHEIQDIINACDTSKYIEETRKHLINWQNCHFDWATNYVYGIEKDYRLVKVGKVGCYLHG 508

Query: 264 ------LESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVE 313
                 + SD   +   N +    L K +  G++    F   LSNPP+     +      
Sbjct: 509 DGLANVILSDGLANFCNNKEYKGKLRKQVNDGQKDNQQFDIVLSNPPYSVSSFRQTTRDY 568

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              ++ EL         ++D S         + +     GG A ++L SS L N    + 
Sbjct: 569 YTEQDFEL------YNSLTDNSSEIECLFIERTKQLLKDGGIAGVILPSSILSNSGIYTK 622

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             EI   +L+   I +I  L ++ F  TN  T +  L  R           ++       
Sbjct: 623 AREI---ILQYFDIVSIAELGSNTFMATNTNTVVLFLRRRDNYFAANTKSAVDTY----- 674

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
                   R +ND     I +   S+        LDY  +    I +L+ L    +    
Sbjct: 675 -------FRTLNDVTINGI-ETPASKYVAHVWEGLDYTDY----ITLLQKLPNDKVKAHE 722

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
             A  +  I+ +  + L+++      + ++  I  Y      VK   K  E + L  + S
Sbjct: 723 IYAEYKKKISAKNDAKLYEAILNIEAEKLLYFILAYSQKVVIVKSGEKDVEKRFLGYEFS 782

Query: 554 KSFIVAFINAFGRKDPRADPVT 575
                  I+A  +K    D  T
Sbjct: 783 NRRGNEGIHAI-QKGKNIDECT 803


>gi|294669729|ref|ZP_06734795.1| hypothetical protein NEIELOOT_01629 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308295|gb|EFE49538.1| hypothetical protein NEIELOOT_01629 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 316

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 106/336 (31%), Gaps = 64/336 (19%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I +++      K    K    + ++    +       ++  +    G    +  + 
Sbjct: 11  LTDNINKVKDGESQLKRVFGKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDV 70

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            +TP  V  L   L     D+           ++D   G+ G L  AMN + +   +   
Sbjct: 71  VLTPAYVATLLAKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLNDAKNSIT 120

Query: 237 PPIL-----------VPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSK 284
            P                G EL    + + +  M++     ++     S     G     
Sbjct: 121 SPEELRRKEVQIKAEQLLGLELLSSIYMLAILNMILMGDGSANILNKDSLADFNGKYGFG 180

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D          + NPP+  K                    G G+  +             
Sbjct: 181 DTDKNFPADAFILNPPYSAK--------------------GNGMVFVEKA---------- 210

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
              L     G AA+++ +S        +      R +L+N+ + A + +P DLF   +++
Sbjct: 211 ---LGMMNKGYAAVIIQNSAGSGKARDNN-----REILKNNTLLASIKMPIDLFIGKSSV 262

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            T +++    +  + +  V+ I+ ++   +  N  K
Sbjct: 263 QTNIYVFKVGEPHDAKSPVRFIDFSNDGYTRTNRKK 298


>gi|331703624|ref|YP_004400311.1| hypothetical protein MLC_6050 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802179|emb|CBW54333.1| Conserved hypothetical protein, putative TYPEII DNA modification
           enzyme (Methyltransferase) [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 676

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/457 (14%), Positives = 140/457 (30%), Gaps = 82/457 (17%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGI-----ELHPDTVPDRVMSNIYEHL 162
           D A  I      +    RL K        K  FS I     E +   +       ++  +
Sbjct: 283 DKADMIVRKMKNTLLKERLNKPKNGETQLKRVFSKIVDCLGEYYQIGLNTDFTGKLFNEM 342

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
               G    +  +  +TP  V  L   L              M   ++D   G+ G L  
Sbjct: 343 YSWLGYTDDKWNDVVLTPSYVGTLLVKLA----------KVNMNSFVWDFATGSAGLLVA 392

Query: 223 AMNHVADCGSHHKIPPILVPH-----------GQELEPETHAVCVAGMLIRR-LESDPRR 270
           AMN + +        P  +             G E+  + + + +  M++     S+   
Sbjct: 393 AMNEMINDAKRKLKSPSAIEEKILHIKANQLLGIEILEDIYMLAILNMILMGDGSSNILC 452

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             S     G+      +        + NPP+ K+                          
Sbjct: 453 KDSLTEFNGNYEFDKSYEKFPADAFVLNPPYSKQGNG----------------------- 489

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                   ++ +     +  +G G   I  S+            +E  + +LE + + A 
Sbjct: 490 --------MVFVERAFSMMTHGYGSIIIQSSAG-------NGKATEYNKKILERNTLLAS 534

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + +P D+F   +++ T++++    +      KV+ I+ ++      N  K +  + D   
Sbjct: 535 IKMPADIFGGKSSVQTHIYVFKIGEPHNNDNKVKFIDFSNDGYKRTNRKKAKINLLD--- 591

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                  + R N +++ ++D   +G  ++ +             G   +     W + +P
Sbjct: 592 -------IDRANQRYNEIVDLVLYGEEKLNIFTKNEY-----YEGYIDVLNGNDWNQSAP 639

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
           + +   LD  K  +     +  +          N  K
Sbjct: 640 VDKRPTLDDFKENISSFLAWEVSNILKSRKENENVKK 676


>gi|256962630|ref|ZP_05566801.1| RM-CspCI [Enterococcus faecalis HIP11704]
 gi|256953126|gb|EEU69758.1| RM-CspCI [Enterococcus faecalis HIP11704]
          Length = 608

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 128/407 (31%), Gaps = 58/407 (14%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS-------TIARLEKAGL 132
           F  T   +L    + +  N   S I S          D D +            ++   +
Sbjct: 179 FVGTCLLALKYDLAFDYPNVTTSQIRSGIQEILENLLDKDLNKASKLVILKDNVIDSQDV 238

Query: 133 LYKICKNFSGI------ELHPDTVPDRVMSN-IYEHLIRRFGSEVSEG-AEDFMTPRDVV 184
                + F  I      ++ P       M   +       F   V +       TP  +V
Sbjct: 239 RDLKIEEFQKILYEIKDKIIPYINDKSTMGQDLLNLFFTTFNKYVGKADKNQAFTPDHIV 298

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILV 241
           H    ++    +++          + DPTCG+G FL  AM       D     +      
Sbjct: 299 HFMCKVVGINRNSV----------VLDPTCGSGAFLVRAMTEAMADCDTDEERERIKKEK 348

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLFTGKRFHYCLSNP 299
             G E E + + +    MLI         D + NI +GS      D+    + +  L NP
Sbjct: 349 IFGIEFEEKAYGLATTNMLIHG-------DGNSNILKGSCFDLLDDITDNNKINRILMNP 401

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+  + +       K  K+        G   + +              +     G+ A++
Sbjct: 402 PYNAQRKHCNPEYVKTWKSNTKQDPSKGFHFVYET-------------VKKVKEGKLAVL 448

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN--RKTE 416
           L         +       ++ +LE   ++A+ +LP D+F    + +    + +   R   
Sbjct: 449 LPMQCAIGNSSEV--KYFKKKMLEEHSLDAVFSLPIDMFHPGASASACCMVFNLGIRHGS 506

Query: 417 ERRGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQILDIYVSRE 460
               +       D     R      +++  +  +   Q L++Y +RE
Sbjct: 507 APLKETFFGYFKDDGFEKRKNIGRMERKNGLWQNIEEQWLNLYFNRE 553


>gi|281422289|ref|ZP_06253288.1| putative type I restriction modification DNA specificity domain
           protein [Prevotella copri DSM 18205]
 gi|281403610|gb|EFB34290.1| putative type I restriction modification DNA specificity domain
           protein [Prevotella copri DSM 18205]
          Length = 1297

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 110/338 (32%), Gaps = 28/338 (8%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +         T+  ++ Y  +    +   F      +     + A +L K+ K    I L
Sbjct: 343 FRRFKNDPDATKKTIKEYFRALKFFSDNDFSFISVHNEKLFRQNAVVLRKMVKMLQDIRL 402

Query: 146 HPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESP 203
             D T  ++ + +++E  + R    + +    F TP  +V    + L L+      ++ P
Sbjct: 403 KTDGTKQNQFLGDLFEGFLNR---GIKQSEGQFFTPMPIVRFIVSSLPLEHIIRDNEDIP 459

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-----GQELEPETHAVCVAG 258
             I    D  CG G FLT+    + +    ++    L  +     G E E     V    
Sbjct: 460 WAI----DYACGAGHFLTEYAVRIKEFVEKYRKDIPLEEYYARITGIEKEYRLSKVSKVS 515

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +   +          ++             ++   ++NPP+      D    E+    
Sbjct: 516 AFMYGQDDINIVYADALVKHPDVH------DGKYEVLVANPPYAVSGFLDTLTDEQ---- 565

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                        +D + +       +       GG A I+L  S L      +   EI 
Sbjct: 566 -RKHYSLYNANVNTDKNNVIEAFFIERAAQLMKTGGVAGIILPVSMLNRNGMHAHAREI- 623

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             +L+N  I A+    +  F +T   T    L  ++T 
Sbjct: 624 --ILKNFDIVALAEFGSGTFGQTGTNTVTMFLRRKETN 659


>gi|32266933|ref|NP_860965.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
 gi|32262985|gb|AAP78031.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
          Length = 1164

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 91/565 (16%), Positives = 172/565 (30%), Gaps = 84/565 (14%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +E+  K    +   +    L      +     ES    F        + F+F       E
Sbjct: 344 IETLFKKKVVNVQKSEIDYLFESAKRHKGKFKESIEKIFDKQKYFNIKKFNFIEVENEEE 403

Query: 129 KAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                  + +  + I+     ++  ++ + +++E  + R    V +    F TP  + + 
Sbjct: 404 FFINFKVLVQITNLIQDFYISESENNQFLGDLFEGFLNR---AVHQTEGRFFTPTPITNF 460

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
               L          +      + D  CG G FLT+ + H  +             +G E
Sbjct: 461 IINSL---------PTLSNNAKILDFACGAGHFLTEFIAHNKNA----------KLYGIE 501

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
              +   V     +    +S  +      +       KD F  + F   LSNPP+  K  
Sbjct: 502 KNKDLSKVAKTACIFHNPKSKSQIIFQDALDFIKENYKDEFENESFDLILSNPPYSVKGF 561

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                   +              K  D +         + +     GG  A+VL  S L 
Sbjct: 562 LSNL----DKALNTFSLSQSIDSKSYDKNNAIECFFVERAKQFLKEGGIFALVLPVSIL- 616

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
             + G    + R  LL +     +V L +  F  T   T +      K  +         
Sbjct: 617 --QKGGIYEKTRELLLAHFKFLCLVELNSRTFGSTGTQTIILFAKRVKKYDE-------- 666

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQ-ILDIYVSR------------------ENGKFSRM 467
             DL + +++       ++DD   +  L  Y                     EN K S +
Sbjct: 667 --DLISRLKDSNFSDEALSDDFNDKNFLQDYCDFMGYDYGSFSKFMREAVLGENLKGSNV 724

Query: 468 L-----DYRTFG-----------------YRRIKVLRPLRMSFILDKTGLARLEADITWR 505
                 DY +                   + +  +      S    K     L++D   +
Sbjct: 725 FKEYFADYESSKPKIFKKQKFNESDKKALFEKSSLFEKDLDSKTYKKQYSEFLKSDEYKK 784

Query: 506 KLSPLH-QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
             + LH Q+F   I     +++  + + +      +KS   K  + K++K+ IV F+  +
Sbjct: 785 AEANLHFQNFLNQIKALECEKMLYFAYIKDEKVLILKSPSDKNKEGKSNKANIVKFL-GY 843

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTE 589
              + + D           D+ L E
Sbjct: 844 DWSNRKGDEGIKYITNKPLDSELKE 868


>gi|315932183|gb|EFV11126.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 687

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 119/357 (33%), Gaps = 71/357 (19%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L+  I    D AK  +E    +    +L  + L      +   ++L    +   V+ + 
Sbjct: 250 ELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSV-CVSSLQNVKLFNSNLE--VIDDA 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   +L          +P    ++ D   G+ G
Sbjct: 307 FEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDESMIDTASGSCG 353

Query: 219 FLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GM 259
           F      +V                   +  S  +        G + + ++  V     +
Sbjct: 354 FPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDEKSVRVSKMLNL 413

Query: 260 L----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCL 296
           +          +  ++ D   +  K+ +    +  + F   +             F   +
Sbjct: 414 IAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKNQNRDFNFDVLM 473

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +     E    E G+    + +     +LF+    + L+     GGR 
Sbjct: 474 ANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDMLKP----GGRM 525

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL           S +  IR ++ +   I A+V L  ++F   T   T +  L  
Sbjct: 526 AIVLPQGRF----NNSSDKYIREFIAQKARILAVVGLHGNVFKPHTGTKTSVLFLQK 578


>gi|283954609|ref|ZP_06372127.1| hypothetical protein C414_000240012 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793801|gb|EFC32552.1| hypothetical protein C414_000240012 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 687

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 119/357 (33%), Gaps = 71/357 (19%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L+  I    D AK  +E    +    +L  + L      +   ++L    +   V+ + 
Sbjct: 250 ELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSV-CVSSLQNVKLFNSNLE--VIDDA 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   +L          +P    ++ D   G+ G
Sbjct: 307 FEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDESMIDTASGSCG 353

Query: 219 FLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GM 259
           F      +V                   +  S  +        G + + ++  V     +
Sbjct: 354 FPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDEKSVRVSKMLNL 413

Query: 260 L----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCL 296
           +          +  ++ D   +  K+ +    +  + F   +             F   +
Sbjct: 414 IAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKNQNRDFNFDVLM 473

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +     E    E G+    + +     +LF+    + L+     GGR 
Sbjct: 474 ANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDMLKP----GGRM 525

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL           S +  IR ++ +   I A+V L  ++F   T   T +  L  
Sbjct: 526 AIVLPQGRF----NNSSDKYIREFIAQKARILAVVGLHGNVFKPHTGTKTSVLFLQK 578


>gi|157415308|ref|YP_001482564.1| hypothetical protein C8J_0988 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386272|gb|ABV52587.1| hypothetical protein C8J_0988 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747951|gb|ADN91221.1| Type I Restriction Enzyme [Campylobacter jejuni subsp. jejuni M1]
          Length = 687

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 119/357 (33%), Gaps = 71/357 (19%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L+  I    D AK  +E    +    +L  + L      +   ++L    +   V+ + 
Sbjct: 250 ELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSV-CVSSLQNVKLFNSNLE--VIDDA 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   +L          +P    ++ D   G+ G
Sbjct: 307 FEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDESMIDTASGSCG 353

Query: 219 FLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GM 259
           F      +V                   +  S  +        G + + ++  V     +
Sbjct: 354 FPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDEKSVRVSKMLNL 413

Query: 260 L----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCL 296
           +          +  ++ D   +  K+ +    +  + F   +             F   +
Sbjct: 414 IAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKNQNRDFNFDVLM 473

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +     E    E G+    + +     +LF+    + L+     GGR 
Sbjct: 474 ANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDMLKP----GGRM 525

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL           S +  IR ++ +   I A+V L  ++F   T   T +  L  
Sbjct: 526 AIVLPQGRF----NNSSDKYIREFIAQKARILAVVGLHGNVFKPHTGTKTSVLFLQK 578


>gi|312874697|ref|ZP_07734718.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|311089774|gb|EFQ48197.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
          Length = 675

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 117/364 (32%), Gaps = 66/364 (18%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           ++  K +FE  D    I        +YK  K    + L    +       I   L     
Sbjct: 290 NNYLKPVFEKRDLWKPINGESVIKSVYKQVKE-DILPLLESNIRLDFTGKILNSLNDWVS 348

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +  +  +TPR V +L   +     D+           ++D   G+ GFL  AM+ +
Sbjct: 349 IDNDKKNDVVLTPRFVTNLMARITRTNKDSF----------VWDTCMGSSGFLVSAMDLM 398

Query: 228 ADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            D   +            K        G E+    + + V  M++    S        + 
Sbjct: 399 IDDAKNTIKDNTVLDSKIKNIKQNQLLGIEILGNIYILAVLNMILMGDGSSQIICGDSHK 458

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +    +    F    F   L NPP+                       G GL  + +   
Sbjct: 459 EAPDFIKTHNFPANVF---LLNPPYSAP--------------------GKGLNFVDEA-- 493

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLENDLIEAIVALPT 395
                  +K++               + L    AGSG+ ++  + +LE + + A + +P 
Sbjct: 494 ------LSKMQTGY-----------GAVLIQENAGSGQGDVYAKRILEKNTLLASIHMPN 536

Query: 396 DLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           DLF   +++ T +++       E    V  I+ ++     +N     + +N       L+
Sbjct: 537 DLFNGKSSVQTAIYLFQVNCPHEVDDMVTFIDFSEDGYVRQNRKHSTQKVNLRNVDHALE 596

Query: 455 IYVS 458
            Y  
Sbjct: 597 RYNE 600


>gi|167945633|ref|ZP_02532707.1| type I restriction-modification system, M subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 91

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       GR A++ S S L+ G +   + +IR+ L+E++L++A+V LP  L   T+I 
Sbjct: 1   MLASLNQDHGRMAVITSLSVLYRGGS---DGDIRQRLIEHNLLDAVVVLPDRLLPNTSIP 57

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             + I    K ++    V  I+A++ +   R + 
Sbjct: 58  IAVLIFRMDKPDD---SVLFIDASNDYQFTRGQN 88


>gi|297587713|ref|ZP_06946357.1| type I restriction-modification system [Finegoldia magna ATCC
           53516]
 gi|297574402|gb|EFH93122.1| type I restriction-modification system [Finegoldia magna ATCC
           53516]
          Length = 154

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 108 SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLI 163
            D+ K +FED D +S        EK   L  I      I     +        + YE+LI
Sbjct: 22  EDDIKGLFEDIDTTSNKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYLI 81

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG    + 
Sbjct: 82  SNYASNAGKSGGEFFTPQTVSKLLAKLVMDGKTSINK--------VYDPTCGERVIIV 131


>gi|86150507|ref|ZP_01068732.1| dna methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85839102|gb|EAQ56366.1| dna methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. jejuni CF93-6]
          Length = 687

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 119/357 (33%), Gaps = 71/357 (19%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L+  I    D AK  +E    +    +L  + L      +   ++L    +   V+ + 
Sbjct: 250 ELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSV-CVSSLQNVKLFNSNLE--VIDDA 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   +L          +P    ++ D   G+ G
Sbjct: 307 FEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDESMIDTASGSCG 353

Query: 219 FLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GM 259
           F      +V                   +  S  +        G + + ++  V     +
Sbjct: 354 FPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDEKSVRVSKMLNL 413

Query: 260 L----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCL 296
           +          +  ++ D   +  K+ +    +  + F   +             F   +
Sbjct: 414 IAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATRNQNRDFNFDILM 473

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +     E    E G+    + +     +LF+    + L+     GGR 
Sbjct: 474 ANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDMLKP----GGRM 525

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL           S +  IR ++ +   I A+V L  ++F   T   T +  L  
Sbjct: 526 AIVLPQGRF----NNSSDKYIREFIAQKARILAVVGLHGNVFKPHTGTKTSVLFLQK 578


>gi|301646759|ref|ZP_07246616.1| conserved domain protein [Escherichia coli MS 146-1]
 gi|301075058|gb|EFK89864.1| conserved domain protein [Escherichia coli MS 146-1]
          Length = 110

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVR 56
           MT      A L   IW+ A D+ G     DF + +L     R +        E    ++ 
Sbjct: 3   MT-SIQQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIC 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
              L       D++         F   S+   +     NT + L + + 
Sbjct: 62  YAKLDDSVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLN 110


>gi|14520377|ref|NP_125852.1| site specific DNA-methyltransferase [Pyrococcus abyssi GE5]
 gi|5457592|emb|CAB49083.1| Site specific DNA-methyltransferase [Pyrococcus abyssi GE5]
          Length = 464

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/516 (14%), Positives = 156/516 (30%), Gaps = 100/516 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  V        +   +        +     DP CG G FL     ++ + G   
Sbjct: 17  GQFFTPPKVAKFIVEFAIAHLEN------RVTNLACDPACGNGVFL----KYLKEKG--- 63

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G +++P         +    + +D                 DL     +  
Sbjct: 64  -----FKIYGFDIDPTVKDRAPKEIKDSIIITDGLL--------------DLPHEGEYDV 104

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  K+ +  D          L +F  G  + S       +    K       GG
Sbjct: 105 VVGNPPFSAKYGRITD-------KKILSKFELGRERKS---QAIEILFLEKFFRCAREGG 154

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              ++L         + +    +R ++L N  I AIVALP ++F  T   T +     +K
Sbjct: 155 IIGVILPFGIF----SNTNLKYVRDFILRNSQILAIVALPRNVFTGTTARTAILF--AKK 208

Query: 415 TEERRGKVQLINA--------TDLWTSIRNEGKKRRIINDD-------------QRRQIL 453
               +G+V + N         + +    ++      I+  +             Q  +++
Sbjct: 209 GGPHKGEVLMANVPSIHHLTISKVKVMGKSVKLVDSILYPEFYLQDHLKLENSVQLGELV 268

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           +    +      R        +   KV+ PL + F  DK  +            + + + 
Sbjct: 269 ETRSGQTEYGEKRKFSKSGIPFISAKVVTPLGIDFTKDKKFIQPNSEMDKKSAHAHVGEI 328

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
            ++ +    + +       E        S        K +  ++  ++ A   K      
Sbjct: 329 VFVRVGVGTIGRTAVITSKEEEGIVDDWSYILTVKSDKVNPYYLAFYLQAPTIK---KQI 385

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGY 633
           +    G         E + +P L   +D+  +       +AY + + + ++ K       
Sbjct: 386 LRYARGVGTITIPQRELKKIPVLIPPKDFLKK-----CEEAYKEMVKLRKEGK------- 433

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
                           +++    L  +E +I  +++
Sbjct: 434 ----------------IREAKMILNSIEKEIEEMIK 453


>gi|322513587|ref|ZP_08066687.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976]
 gi|322120658|gb|EFX92552.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976]
          Length = 802

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 119/348 (34%), Gaps = 35/348 (10%)

Query: 105 ASFSDNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPD-----RVMSNI 158
            S + NA  +   F+F  S     +    L  +    + I+ +  T  D       +S  
Sbjct: 239 KSKNKNADTVLGAFNFIRSNKTFEDDKTGLLNLLSVINSIKDNVYTFLDKYKYIDTLSQF 298

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y   +R   +   +G    +TP  +  L   +     D +          + D   GTGG
Sbjct: 299 YIEFLRY--ANTDKGLGIVLTPLHIAQLFAKMAGVNKDTV----------VLDNAAGTGG 346

Query: 219 FLTDAM-NHVADCGSHHK---IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           FL  AM   + D G   K          +G E E    A+ V+ M+I    SD R ++  
Sbjct: 347 FLVAAMGEMILDAGDDEKKILDIKKNQIYGIEYEDSILALLVSNMIIH---SDGRSNIYW 403

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                    K L           +        K ++    E+K        P      D 
Sbjct: 404 GNSFDIIPDKLLKYKDYNKNKKEDEIIQS--LKYENINLDENKIDVGLLNPPFKMATDDT 461

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
                  + + L     GG   A++   + + N  +G      ++ LL N  +EA+V+LP
Sbjct: 462 E--EFEFIFSNLNAIKKGGTVIALI--PTSVINDTSGVNYIN-KKKLLRNHTLEAVVSLP 516

Query: 395 TDLFFR--TNIATYLWILSNRKTEERRGKVQL-INATDLWTSIRNEGK 439
            DLF    T+I T   +++      +  +        D +   +N G+
Sbjct: 517 EDLFANSKTSIVTVGIVITAHIPHPKLKETWFGYWRDDKFVKTKNLGR 564


>gi|296242623|ref|YP_003650110.1| N-6 DNA methylase [Thermosphaera aggregans DSM 11486]
 gi|296095207|gb|ADG91158.1| N-6 DNA methylase [Thermosphaera aggregans DSM 11486]
          Length = 1095

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 103/323 (31%), Gaps = 58/323 (17%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            + +E H       V+  IYE LI     E       F TPR +  L     +       
Sbjct: 335 INYLEEHRIEKLGDVVGFIYEDLIP---GEERHQLGQFYTPRPIAELIVKWCV------- 384

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------------SHHKIPPILVPHGQEL 247
                    + DP CG+G FL +A   +A+                     +   HG +L
Sbjct: 385 ---RSPDDRVLDPGCGSGTFLVEAYKRLAELKLKKPWSEIKHVPGDVHRQILRQLHGVDL 441

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----------------K 290
                 +    + ++ + +             + +                        K
Sbjct: 442 NEFPAHLTAMNLAMKNVRAPSPEMYVFVRDYFTIMPGHQVLTPYKVRTVEGEKPVEVVFK 501

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSML-----FLMHLAN 344
            F   + NPP+    +  ++  E   +  G++ R       ++ G++      +++H A 
Sbjct: 502 DFDAVVGNPPYTPWNQIPEETREIILELYGKVLRNYNLRKFVTGGALPGIFVPWIVHSAK 561

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L      GGR  +++S S L             ++L +N  + AI+ L   +F    I 
Sbjct: 562 FLR----EGGRLGMIISDSWLGTQYGVG----FVKYLADNFKVVAIIDLAERVFKAPLIG 613

Query: 405 TYLWILSN--RKTEERRGKVQLI 425
           T + +L     K E     +  +
Sbjct: 614 TCIILLEKTSNKNERDDNSIVFV 636


>gi|42779915|ref|NP_977162.1| type I restriction-modification system, M subunit, putative
           [Bacillus cereus ATCC 10987]
 gi|42735833|gb|AAS39770.1| type I restriction-modification system, M subunit, putative
           [Bacillus cereus ATCC 10987]
          Length = 613

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 91/217 (41%), Gaps = 27/217 (12%)

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKK 304
           +T ++ V  M+  +L +      +  I+QG  L K  F       ++F   +S P  G  
Sbjct: 175 DTMSLDVFDMM--QLGAYAYEISNIVIKQGDVLKKPTFILEEGNLQQFDCVISIPAMGS- 231

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       ++ E GRF  G     D ++ ++ H     +      GRA I+     
Sbjct: 232 ------ISPNVGEHDEFGRFLFGRSSKRDATLDYVSHALASTKT----NGRAVILTLGGS 281

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF    G  E ++R  + ++  +E ++   + +   T +A Y   L+  ++ +    +++
Sbjct: 282 LFR---GGVEEKVRTAIAKSRQVEGVIKFASSILLNTAVAPYALFLNRNQSLDVSPSIRM 338

Query: 425 INATD-LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           ++A++ +    R +     ++ ++   +IL +Y S E
Sbjct: 339 VDASEIIGVQGRAK-----VLENEHIERILSLYRSSE 370


>gi|260592072|ref|ZP_05857530.1| type IIS restriction enzyme M protein [Prevotella veroralis F0319]
 gi|260535950|gb|EEX18567.1| type IIS restriction enzyme M protein [Prevotella veroralis F0319]
          Length = 683

 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 123/389 (31%), Gaps = 74/389 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                ++  +    G    +  +  +TP  V  L   L     D+           ++D 
Sbjct: 339 DFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVATLLVKLARVNKDSY----------VWDF 388

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLI 261
             G+ G L  AMN +     ++   P                G EL P  + + +  M++
Sbjct: 389 ATGSAGLLVAAMNEMLIDAKNNIDSPNELAIKEAHIKAEQLLGIELLPSVYMLAILNMIL 448

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                            GS+   +  + K F        +G    K++   +    N   
Sbjct: 449 MG--------------DGSSNILNKDSLKDFDG-----KYGYGRPKEQFPADAFVLNPPY 489

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
              G G+  +                L     G AAI++ +S    G   + E   R  +
Sbjct: 490 SSLGNGMNFVEKA-------------LSMMQKGYAAIIIQNSA---GSGRATEYNKR--I 531

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+ + + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   +  N  K 
Sbjct: 532 LKRNTLLASIKMPIDLFIGKSSVQTNIYVFRVNEAHKKDDVVKFIDFSNDGYTRTNRKKA 591

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              + D    +           ++  + +   FG  ++  L            G     +
Sbjct: 592 SVNLRDTDHAK----------ERYEEVFNLVRFGKSKLNFLTEKEY-----YEGTIDPNS 636

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              W + +P+     L   K  +     +
Sbjct: 637 GADWNQTAPIDTKPTLADFKKTVSDYLAW 665


>gi|283954614|ref|ZP_06372132.1| LOW QUALITY PROTEIN: hypothetical protein C414_000240125
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793806|gb|EFC32557.1| LOW QUALITY PROTEIN: hypothetical protein C414_000240125
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 1035

 Score = 81.0 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 134/384 (34%), Gaps = 28/384 (7%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L +   +  +++YI      +   F   +  +   
Sbjct: 309 EAMKEFLGEKITFVSNEDIEKDFKQLKTKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 368

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 369 FLKNALVLKEIVELFTNYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 424

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
               ++                 + D  CG G FL    N +       ++       +G
Sbjct: 425 F---IVYSLPLQTMLSENSKALKVIDYACGAGHFLNTYANELKRYLKKEELKEYYKNIYG 481

Query: 245 QELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCL 296
            E E     V    + M  +   +    D   + +  +T +      K       F   +
Sbjct: 482 IEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTSNLEGEKAKPQIESNSFDLLI 541

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K     + +  + KN           + ++    F    AN++        +A
Sbjct: 542 ANPPYSVK--GFLETLSNKSKNTYKLFNDDINIETNNAIECFFCERANQIL---KDNAKA 596

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+L SS L      S     R  L +N    AIV L +  F  T   T +  L  ++T 
Sbjct: 597 AIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGSCTFGATGTNTIILFLRKKETF 653

Query: 417 ERRGKVQLINATDLWTSIRNEGKK 440
           ++       + + +   I +E  K
Sbjct: 654 KQENNFISQDYSLILERIESENLK 677


>gi|159901785|ref|YP_001548030.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894824|gb|ABX07902.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 623

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 131/433 (30%), Gaps = 71/433 (16%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
               I+     +   +     E   R   F  + +     + TPR +V     +      
Sbjct: 55  KVDEIKTRLSALSTLLEGGAAELFDRYILFRLDQTHLGGRYPTPRHLVKFMRTIA----- 109

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                      +L D  CG+GG L          G         + +G E+ P+   +  
Sbjct: 110 -----HVTANDSLLDLACGSGGML---------AGRAQSAEHPTLTNGLEISPQWARLAW 155

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           A   +  L+ D   +++  +     +S         +  L NPPFG +   +  +   E 
Sbjct: 156 ANCALHGLK-DFTIEIADALTYPQAIS--------VNRILMNPPFGTQVSTEGLSGRSET 206

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +                     +      L       GR  ++  +  LF    G  E E
Sbjct: 207 R--------------------LIEQAIKWL----ADNGRLCVLAPAGILF---GGGREKE 239

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA-TDLWTSI 434
           +R+ L  N  I AI+ALP D F   + + TYL +++    +        I A  D +   
Sbjct: 240 LRKNLCTNQQINAIIALPKDTFQPFSTLQTYLLLITKSVPQAG---TWFIRAERDGYMRG 296

Query: 435 RNEGKKRRIINDDQ---RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           R     ++  +         IL    +          D +   YR++ +     +     
Sbjct: 297 RGRDLTKQPTDASDFPLIESILGWDNTWNLTD-----DQQLLSYRQLTIDEERVLIIGAP 351

Query: 492 KTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
              +  ++E      K   L         K  +  +      +   ++       K  K 
Sbjct: 352 AGSIFTQVERYSQGSKHIFLINVGLDAQRKSYIVDLNDPIPIKLMTQQREDIITEKFSKS 411

Query: 551 KASKSFIVAFINA 563
           K  K  +V  +N 
Sbjct: 412 KEEKPKLVTLLNG 424


>gi|119513482|ref|ZP_01632506.1| putative type I restriction-modification system,
          methyltransferase subunit [Nodularia spumigena CCY9414]
 gi|119461862|gb|EAW42875.1| putative type I restriction-modification system,
          methyltransferase subunit [Nodularia spumigena CCY9414]
          Length = 108

 Score = 81.0 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 8  AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
             + +FIW  A+D L   +    +  VILP  +LRRL+C LE T++ V E+        
Sbjct: 6  QNKIVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLESTKADVLEEVRFQREEA 65

Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +D     + +GY FYN SE++L  L
Sbjct: 66 KFEVLDPSGLQEASGYVFYNVSEWTLKKL 94


>gi|57505847|ref|ZP_00371772.1| type IIS restriction enzyme [Campylobacter upsaliensis RM3195]
 gi|57015877|gb|EAL52666.1| type IIS restriction enzyme [Campylobacter upsaliensis RM3195]
          Length = 1096

 Score = 80.6 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 108/328 (32%), Gaps = 71/328 (21%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           + L        +   ++  + +      +E  +  +TPR VV +  +L     D+     
Sbjct: 331 LPLVKKLQTADIAGRLFNSITKWLEVPDNEKNDVVLTPRYVVDMMVSLTGVNKDSF---- 386

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETH 252
                 ++D   G+G FL  AMN +     + + P  +             G E   + +
Sbjct: 387 ------VWDYATGSGAFLISAMNAMIKDAQNLQSPKEIEAKIAHIKAYQLLGIEKRSDIY 440

Query: 253 AVCVAGMLIRR------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            + +  M++        L  D  +D + + +QG    +           L NPP+    +
Sbjct: 441 LLGILNMILLDDGSANLLHKDSLKDFNGSYEQGDKKGQ----SFPADVFLLNPPYSASGK 496

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                                         +F+     K+       GRA +++  +   
Sbjct: 497 G----------------------------FIFVERALRKM-----SKGRACVIIQENAGS 523

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI 425
                         +L++  + A + +P+DLF   +++ T +++    K    +  V+ I
Sbjct: 524 GNGLPYT-----ADILKHSTLLASIKMPSDLFAGKSSVQTAIYVFEVGKAHNVKQMVKFI 578

Query: 426 NATDLW--TSIRNEGKKRRIINDDQRRQ 451
           + +      + R + K    + D    +
Sbjct: 579 DFSSDGYTRAARKKAKASTNLKDTDNAK 606


>gi|305431928|ref|ZP_07401095.1| DNA methylase-type I restriction-modification system [Campylobacter
           coli JV20]
 gi|304445012|gb|EFM37658.1| DNA methylase-type I restriction-modification system [Campylobacter
           coli JV20]
          Length = 687

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 118/357 (33%), Gaps = 71/357 (19%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L+  I    D AK  +E    +    +L  + L      +   ++L    +   V+ + 
Sbjct: 250 ELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSV-CVSSLQNVKLFNSNLE--VIDDA 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   +L          +P    ++ D   G+ G
Sbjct: 307 FEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDESMIDTASGSCG 353

Query: 219 FLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GM 259
           F      +V                   +  S  +        G + + ++  V     +
Sbjct: 354 FPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDEKSVRVSKMLNL 413

Query: 260 L----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCL 296
           +          +  ++ D   +  K+ +    +  + F   +             F   +
Sbjct: 414 IAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATKNQNRDFNFDILM 473

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +     E    E G+    + +     +LF+    + L      GGR 
Sbjct: 474 ANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDMLRP----GGRM 525

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL           S +  IR ++ +   I A+V L  ++F   T   T +  L  
Sbjct: 526 AIVLPQGRF----NNSSDKYIREFIAQKARILAVVGLHGNVFKPHTGTKTSVLFLQK 578


>gi|270685245|ref|ZP_06222844.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270316187|gb|EFA28160.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 112

 Score = 80.6 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 20/129 (15%)

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M +  +  D       +I  G+TL +  F   K F   +SNPP+  KW    D      +
Sbjct: 1   MFLHNINYDK-----FDIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPTLINDE 55

Query: 318 NGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                RF P   L   S     F++H  + L    +  GRAAIV      + G A   E 
Sbjct: 56  -----RFAPAGVLAPKSKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQ 103

Query: 376 EIRRWLLEN 384
           +IR++L++N
Sbjct: 104 KIRQYLVDN 112


>gi|296126598|ref|YP_003633850.1| restriction modification system DNA specificity domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296018414|gb|ADG71651.1| restriction modification system DNA specificity domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 1134

 Score = 80.2 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 125/431 (29%), Gaps = 79/431 (18%)

Query: 62  FGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDF 118
              +  + E            Y      L+ L  +  ++ L   I     D+ K   E  
Sbjct: 271 DEDNTKENEELCFQWREATDNYEIFIDRLNQLFQSGMKDYLNKIIFYIKLDDIKQKNEKE 330

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV------------------PDRVMSNIYE 160
              S +  +      +     F   +   +T                     + + + +E
Sbjct: 331 LRESLMQAMIYKNQEFSFVDIFDERDFKRNTSIVKEVVELLQGYQFRYTEKHQFLGDFFE 390

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +L+    +   +    F TPR +         +     + +   +   I  + D  CG+G
Sbjct: 391 NLL---NTGFKQEVGQFFTPRILTRFIVQSIPIKKIIKEKILSGNKDFIPKVIDFACGSG 447

Query: 218 GFLTDAMNHVA------------------------DCGSHHKIPPILVPHGQELEPETHA 253
            FLT+ M+ +                         +      I      +G E +     
Sbjct: 448 HFLTEVMDIIQKSLLEIGKENLDILKTVRTILERYNDDPDQFIWAEKNIYGIENDYRLVK 507

Query: 254 VCVAGMLIRR------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
                           L++      + +  +G+ L       +RF   +SNPP+     K
Sbjct: 508 TTKLSCFFNGDGEAQILQTSGIYPFNHDDYRGTLLDTINKENERFDIVVSNPPYSVSGFK 567

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                   +              I+D S    +    +++      G AAI+L  S L  
Sbjct: 568 AIMDRSSNNAFDLY-------KDITDSSKEIEVIFIERMKQLLKPNGYAAIILPVSIL-- 618

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER--------- 418
            +      + R  + EN  ++ IV L ++ F  T   T +  L  R+   R         
Sbjct: 619 -QNDGLYEKARTIIFENFYLKGIVKLGSNAFQATGTNTVVLFLQKREKPIRLENKESYIN 677

Query: 419 ---RGKVQLIN 426
                K+ +I+
Sbjct: 678 MCKDKKILIID 688


>gi|229195089|ref|ZP_04321864.1| Type I restriction-modification system, M subunit [Bacillus cereus
           m1293]
 gi|228588318|gb|EEK46361.1| Type I restriction-modification system, M subunit [Bacillus cereus
           m1293]
          Length = 616

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 92/218 (42%), Gaps = 27/218 (12%)

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKK 304
           +T ++ V  M+  +L +      +  I+QG  L K  F       ++F   +S P  G  
Sbjct: 178 DTMSLDVFDMM--QLGAYAYEISNIVIKQGEVLKKPTFILEEGNLQQFDCVISIPAMGS- 234

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       ++ E GRF  G     D ++ ++ H     +      GRA I+     
Sbjct: 235 ------ISPNVGEHDEFGRFLFGRSSKRDATLDYVSHALASTKA----NGRAVILTLGGS 284

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF    G  E ++R  + ++  +E ++   + +   T +A Y   L+  ++ +    +++
Sbjct: 285 LFR---GGVEEKVRTAIAKSRQVEGVIKFASSILLNTAVAPYALFLNRNQSLDVSPSIRM 341

Query: 425 INATD-LWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           ++A++ +    R +     ++ ++   +IL +Y S EN
Sbjct: 342 VDASEIIGVQGRAK-----VLENEHIERILSLYQSGEN 374


>gi|303327178|ref|ZP_07357620.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863166|gb|EFL86098.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 737

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 113/377 (29%), Gaps = 66/377 (17%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                   N+    E     ++ + +   +  +     ++      +  + +   GI + 
Sbjct: 198 FHKNGRPENSIEVFERINKLYTQSYQRYIDSSEGDEINSKEFPEERVKSVVQALQGISIT 257

Query: 147 PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL--DPDDALFKESP 203
                   ++   +E ++R   S   +    + T  ++V      +      + ++K+S 
Sbjct: 258 KGAARHGDIIGAFFEEILR---SGFKQDRGMYFTHDNLVRFMVEAVGLSTLTEVVWKKSN 314

Query: 204 GMIRTL---YDPTCGTGGFLTDAMNHVADC-----------------------GSHHKIP 237
                +    DP CG+G FL  AMN + +                               
Sbjct: 315 HPDNRIPYIIDPACGSGTFLLHAMNTITNTIKKSEEKLVIDHDSEQFYRARLSNEQPNYW 374

Query: 238 PILVPHGQELEPETHAVCVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
                +G + +          M++                         +     +R   
Sbjct: 375 AENFIYGFDPKFIMAITAKVNMVLHGDGSAHIYKEDAFKSFSLYNDVRLRPCSDSQRSVP 434

Query: 292 -----------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                      F   +SNPPFG         +  E +      F       S+G  LF+ 
Sbjct: 435 RANYSQDVCETFDVVISNPPFGI-------TLPIESQRTLAKTFLLSNSTPSEG--LFIE 485

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L+      GR A+VL  S L          ++RR++     I++IV+LP ++F  
Sbjct: 486 RCFQLLKQK----GRLALVLPESLL----NAKEMVDVRRFIFRFFNIKSIVSLPRNIFID 537

Query: 401 TNIATYLWILSNRKTEE 417
           T   T L     +  EE
Sbjct: 538 TPTLTSLLFAQKKTAEE 554


>gi|332885870|gb|EGK06116.1| hypothetical protein HMPREF9456_02380 [Dysgonomonas mossii DSM
           22836]
          Length = 1005

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 102/682 (14%), Positives = 204/682 (29%), Gaps = 133/682 (19%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           G+       ++++   L++ LE   +   +        +   N D  +   V        
Sbjct: 191 GNENAALVKRILMMLILIKYLEERKDEDGNGALNPNEFYKAYNPDDPTLEGVLENV---- 246

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFS-STIARLEKAGLLYKICKNFS 141
            +  ++ L   +++ +    I    DN  +   E  D +              +  +   
Sbjct: 247 -DTFVNVLKELSSKEHFNGQIFLLDDNELSALKEKVDLTLFQHFVKGDVSFFTEGNQGIG 305

Query: 142 GIELH----PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            + L      + +P  ++S+IYE  +        +      TP  +V       +   D 
Sbjct: 306 QMSLWRLYQFNYLPIELISHIYEDFLAD--ENGQKKKGVVYTPPYLVQFLIDQCMPLKD- 362

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------ADCGSHHKIPPILVPH 243
                P     + DP CG+G FL  A   +               +     K        
Sbjct: 363 -----PKQNFKILDPACGSGIFLVGAFKRMIQWWRVQNNWKKPKKENIQELKDLLQKNIF 417

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------------R 291
           G +LE E   +    + +  L+S   R++ +N+     +  +L+ G              
Sbjct: 418 GCDLEDEAVTLSYFSLGLALLDSLSPREIWRNVHFDDLIGYNLYQGDFFKTLHEGKIKSD 477

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           FH  + NPPF  ++    + V+K+ K     R        +  ++LFL      L +   
Sbjct: 478 FHLIIGNPPFNSEFTDWANLVDKKEKENNTERPD---IPDNQIALLFLEQSIKLLRV--- 531

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNI---AT 405
            GG   ++L S P+          + R++L E   I+      +L   LF  ++      
Sbjct: 532 -GGNCCLILPSGPVLYNTNTH---DFRKYLFEQYYIKGFFDFTSLRAKLFIGSSSSAKPA 587

Query: 406 YLWILS--------------NRKTEERRGKVQL-INATDL------------------WT 432
            + + +               R+T+    K+   I+  D+                  + 
Sbjct: 588 VVTVFAERADHKERSCVHSIFRRTKASGEKIDFEIDHYDIHKVSYKSAINLPSVWQANFM 647

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                 +    I D   + +      R      ++ +          + R   +S    K
Sbjct: 648 GGGRLHQLLNKITDVNIQTVGKYLNERVENNNWKVAEGWIEAPNSKNIRRVKHLSSKDRK 707

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK----------- 541
           T     E    +  L   +++ W+     +    +     +S    +IK           
Sbjct: 708 TEDEIQE----FVALEAKYKAGWITGYNYVETDGFTENGLKSIKTCNIKYFYRSTKTNKE 763

Query: 542 -----------SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN-GEWIPDTNL-- 587
                      S   +++ V  S  ++      FG   P +D       G ++ D N   
Sbjct: 764 VFQPPHLLIKESVTGRSIPVIYSDQYLTFKDKIFGVHSPESDIADLQKLGNYLKDENCVS 823

Query: 588 ----------TEYENVPYLESI 599
                     T  E VP    I
Sbjct: 824 LMWLLSGQVLTSREGVPLKGDI 845


>gi|207110324|ref|ZP_03244486.1| type I restriction enzyme M protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 113

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF  H  N L    +  G+ AI++ +  +        E++I R L++  L+  ++ +P+ 
Sbjct: 12  LFFQHCLNML----SHKGKGAIIVPTGFISAKS--GVENKIVRHLVDERLVYGVICMPSQ 65

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +F  T     +       +E+   +V LI+A+ L      
Sbjct: 66  VFANTGTNVSIIFFQKTPSED---EVVLIDASKLGEEYTE 102


>gi|32476969|ref|NP_869963.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
 gi|32447517|emb|CAD79106.1| probable Type I restriction enzyme EcoEI M protein-Escherichia coli
           [Rhodopirellula baltica SH 1]
          Length = 351

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 47/174 (27%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE L+    S        F TPR ++ L + L+          +P +   + DP
Sbjct: 193 DIQGDVYEMLLNEISSAG--KNGQFRTPRHIIKLISELV----------NPQLGHRVCDP 240

Query: 213 TCGTGGFLTDAMNHV----------------------------ADCGSHHKIPPILVPHG 244
            CGT GFL DA  ++                                 + K       +G
Sbjct: 241 ACGTAGFLLDAYQYIITQLARKKAKKNQEFEPDEDGFIRTSVSGQLDQNKKDILEQSLYG 300

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            + +     + +  +++  ++       + ++    TLSK       +   ++ 
Sbjct: 301 FDFDSTMVRLALMNLMMHGID-------NPHVDYQDTLSKSFSEEAEYDIVMAQ 347


>gi|296395125|ref|YP_003660009.1| N-6 DNA methylase [Segniliparus rotundus DSM 44985]
 gi|296182272|gb|ADG99178.1| N-6 DNA methylase [Segniliparus rotundus DSM 44985]
          Length = 819

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 117/424 (27%), Gaps = 106/424 (25%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           FDF+  +           + +      L      D +    +E  + R           F
Sbjct: 266 FDFTDVLD--ISDATFRALVQRLQRFNLS--KTGDDIKGIAFERFLGR---TFRGELGQF 318

Query: 178 MTPRDVVHLATA--------LLLDPD-----------DALFKESPGMIRTLYDPTCGTGG 218
            TPR VV             L+ DP            D +       I    +    T  
Sbjct: 319 FTPRPVVDFMIEALDPQEGELICDPAAGSGGFLIRAFDHVRSSIASDIERQKNDAYATIT 378

Query: 219 F---LTDAMNHVADCGSH-----HKIPPILV--------------------PHGQELEPE 250
                +     +            K+   L                      +G + EP 
Sbjct: 379 AEYAQSSTEEQLEQRDRQIDAAFAKLNEELSPTDSTGAPARTRVGLLSWDCIYGTDKEPR 438

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK------- 303
                   M++   +          +         +F G RFH  ++NPPFG        
Sbjct: 439 AARTAKMNMIMHG-DGHGGIHWHDGLVN----INGIFPG-RFHVVVTNPPFGASVTSAQR 492

Query: 304 -------------------------KWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSML 337
                                     W+   DAV        L +F  G  K S     L
Sbjct: 493 IGATTESDVPNDPAYARRQFKRYGDDWKISHDAVVNARGTPILDQFEIGRGKNSRQTETL 552

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    N L+     GGR AIVL +  L           +RRW+     +  +VALP + 
Sbjct: 553 FVERCLNLLKP----GGRLAIVLPNGNLNAMSLDW----LRRWVEGKAFLRGVVALPPET 604

Query: 398 --FFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             F + +++  +  L      +    +   ++A    T   +  +   + +    +Q++ 
Sbjct: 605 FKFSKASVSASIVFLDKFTDVDAAAWQAAWMDAEKSTTPQFDAQRSATVQS--HEQQVVT 662

Query: 455 IYVS 458
            +  
Sbjct: 663 AFGD 666


>gi|153951579|ref|YP_001397840.1| DNA methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939025|gb|ABS43766.1| dna methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 687

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 117/357 (32%), Gaps = 71/357 (19%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L+  I    D AK  +E    +    +L  + L      +   ++L    +   V+ + 
Sbjct: 250 ELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSV-CVSSLQNVKLFNSNLE--VIDDA 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   +L          +P    ++ D   G+ G
Sbjct: 307 FEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDESMIDTASGSCG 353

Query: 219 FLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GM 259
           F      +V                   +     +        G + + ++  V     +
Sbjct: 354 FPIHTCFYVWRSIYKERSIEASHLFTAQEKIPECQDYVKEKVFGIDFDEKSVRVSKMLNL 413

Query: 260 L----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCL 296
           +          +  ++ D   +  K+ +    +  + F   +             F   +
Sbjct: 414 IAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATKNQNRDFNFDILM 473

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    ++ +     E    E G+    + +     +LF+    + L      GGR 
Sbjct: 474 ANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDMLRP----GGRM 525

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           AIVL           S +  IR ++ +   I A+V L  ++F   T   T +  L  
Sbjct: 526 AIVLPQGRF----NNSSDKYIREFIAQKARILAVVGLHGNVFKPHTGTKTSVLFLQK 578


>gi|218247760|ref|YP_002373131.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218168238|gb|ACK66975.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 692

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 87/273 (31%), Gaps = 58/273 (21%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS----------------EGAEDFMTPRDV 183
            S +  HP  + +  +  I E+L        +                +    + TPR +
Sbjct: 90  ISTLPRHPKDIRNLNLELIQENLKNAINEVENIPNLFNHYILFRLSTRQSGGRYPTPRHI 149

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
                 L                 +L D  CG+GGFL +             I       
Sbjct: 150 TQFIFNLA----------QIEPHHSLADFACGSGGFLVE---------RELTIDNYSKTW 190

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G ++ PE   +    + +++         + N+        D +  +     L NPPFG 
Sbjct: 191 GIDISPEWIRLAYTNIALKKFPPQLGSGNAINVAN-----SDDWKDRVCDRILMNPPFG- 244

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                      E  + +L     G    S            KL       G A I++ S 
Sbjct: 245 -----------EKIDSKLATENLGKNVGSRSETALTTLAIQKL----AEDGIAGILVPSG 289

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            LF+      E E+R+ L+++  ++A++ LP D
Sbjct: 290 LLFSNS--KAERELRQTLIDDYHLKAVITLPKD 320


>gi|315638642|ref|ZP_07893816.1| type I restriction/modification enzyme [Campylobacter upsaliensis
           JV21]
 gi|315481266|gb|EFU71896.1| type I restriction/modification enzyme [Campylobacter upsaliensis
           JV21]
          Length = 1191

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/532 (13%), Positives = 161/532 (30%), Gaps = 54/532 (10%)

Query: 34  VILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
            IL    L + ++    P       K L +  +   ++  + +      +     +    
Sbjct: 293 YILVDLFLCKIVDERANPNNLQFYYKGLMYDSAFDYVDRLLNLHEIGIKDLFGKRVVNFK 352

Query: 93  STNTRNNLESYI---ASFSDNAKAIFEDFDFSS-------TIARLEKAGLLYKICKNFSG 142
                   + +         +   +F+   +          +   E+  L +KI    + 
Sbjct: 353 KGEIDKIFDKHERRKNGLKADLDKLFDKQKYFGMKKFSFIEVENEEEFQLNFKILTKITN 412

Query: 143 I--ELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           +  + +     + + + +++E  + +   +       F TP  + +     L    D + 
Sbjct: 413 LIQDFYISQSENNQFLGDLFEGFLNKSIHQT---EGRFFTPTPITNFIIHSLPHLQDDI- 468

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    + D  CG G FLT+ + H ++             +G E   +   V     
Sbjct: 469 --------KVLDFACGAGHFLTEFITHKSEA----------KLYGIEKNKDLSKVAKTAC 510

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW--EKDKDAVEKEHK 317
           L+   +           +   +  KD F  + F   LSNPP+  K      +++V K   
Sbjct: 511 LLHNAKEAQVIFQDALDEIKESDKKD-FENESFDLILSNPPYSVKGFLSTLEESVLKNFT 569

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                                      K +          +VL  S L   + G    + 
Sbjct: 570 LSSAVENHYKNN-------AIECFFIEKAKQFLKPNALLVLVLPVSIL---QKGGIYEKT 619

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L EN  I +IV + +  F  T   T +      K  E+    +LIN   L  +  ++
Sbjct: 620 REVLFENFQILSIVEMSSRTFGSTGTQTIILF---AKRMEKPYATELINI--LKENAFDD 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
              +R     +++ I+  Y       ++   D+ +       +         L      +
Sbjct: 675 EILQREYGSSEKKDIIYKYCDFMAYDYADFKDFMSGLPLSENLKNNEIFKEYLSDFSTTK 734

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            +     +      ++ +   LK   + I          ++  +S + K L+
Sbjct: 735 PKKFKKQKLKDFEKKALFDTYLKQKQEAIKDTKAYNKAYRDFKESKDYKELE 786


>gi|240949148|ref|ZP_04753495.1| putative type II DNA modification enzyme (methyltransferase)
           [Actinobacillus minor NM305]
 gi|240296451|gb|EER47087.1| putative type II DNA modification enzyme (methyltransferase)
           [Actinobacillus minor NM305]
          Length = 680

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 135/440 (30%), Gaps = 87/440 (19%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I + +      K    K    + ++    +       ++  +    G    +  + 
Sbjct: 300 LTDNINKPQNGESQLKRVFTKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFTQDKLNDV 359

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  V  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 360 VLTPSYVATLLVKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLKDAKEAIH 409

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----KNIQQGST 281
              +              G EL    + + +  M++    S    + +     + + G  
Sbjct: 410 SPEELRQKEAHIKAKQLLGLELLSSVYMLAILNMIMMGDGSSNIINKNSLTDFDGKYGFG 469

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            + D F    F   + NPP+                                  M F+  
Sbjct: 470 NTDDKFPADAF---VLNPPYSAVGNG----------------------------MNFVET 498

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
             N +       G AAI++ +S            EI + +L+   + A + +P DLF   
Sbjct: 499 ALNMM-----NKGYAAIIIQNSA-----GSGKAKEINQRILQKHTLIASIKMPIDLFIGK 548

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +++ T +++    +       V+ I+ ++   +  N  K    + D    +         
Sbjct: 549 SSVQTNIYVFKVGEKHHADEMVKFIDFSNDGYTRTNRRKASNNLKDTDNAR--------- 599

Query: 461 NGKFSRMLDYRTFGYRRIKVL-RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             ++  +++   FG  ++++          +D    A       W + +P+     LD  
Sbjct: 600 -ERYDEVVNLVRFGKSKLRLFSEKEYFENTIDPKNGA------DWNQTAPIDTKPTLDDF 652

Query: 520 KPMMQQIYPYGWAESFVKES 539
           K  +     +  A    K++
Sbjct: 653 KKTVSDYLAWEVANILKKQA 672


>gi|294787234|ref|ZP_06752487.1| putative restriction enzyme alpha subunit [Parascardovia
           denticolens F0305]
 gi|315227217|ref|ZP_07869004.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294484590|gb|EFG32225.1| putative restriction enzyme alpha subunit [Parascardovia
           denticolens F0305]
 gi|315119667|gb|EFT82800.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 622

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 80/269 (29%), Gaps = 36/269 (13%)

Query: 162 LIRRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
               F   V +       TP  +       +                 + DP CG+G FL
Sbjct: 286 FFTTFNKYVGKSDKNQAFTPDHICDFMCKAI----------GVSKNSRVLDPCCGSGAFL 335

Query: 221 TDAM---NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             AM       D     +       +G E E   + +    MLI    +      S   +
Sbjct: 336 VRAMVDAMDDCDTEEEREKVKREQIYGIEYEDGAYGLSSTNMLIHSDGNSNIIQDSMFNK 395

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                S D+ T       L NPP+               K      +     K       
Sbjct: 396 AKWIESNDINT------VLMNPPYNAT------------KKFCDPAYVKQWGKTKKEDPS 437

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
             +H    +    N   + A++L               + ++ +L N  ++A+ +LP ++
Sbjct: 438 KGIHFVEYIAKHVNPTAKMAVLLPMQAAIGTSNEI--KDFKKKMLANYTLDAVFSLPNEM 495

Query: 398 FF--RTNIATYLWILSNRKTEERRGKVQL 424
           F+   + +A  +    ++K E+   +   
Sbjct: 496 FYPGASAVACCMIFDLSQKHEKANRETFF 524


>gi|261415108|ref|YP_003248791.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371564|gb|ACX74309.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325786|gb|ADL24987.1| putative type IIG restriction endonuclease and DNA modification
           methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 894

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 138/454 (30%), Gaps = 67/454 (14%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +       +F++ D         K   +Y I        L  D         ++  L  
Sbjct: 281 EAIMHELSNVFKNEDLYKPKNGESKLRKVYVIVHKDILPYLTSDLPNIDFTGRLFNVLND 340

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                     +  +TPR V  L   L              M   ++D   G+ GFL  AM
Sbjct: 341 WVDVPDGAENDVVLTPRYVTELMAKLT----------EVNMNSYVWDYATGSAGFLISAM 390

Query: 225 N-HVADCGSHHKIPPILVPH----------GQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           +  +AD  +  K P  L             G E  PE + + V  M++         D S
Sbjct: 391 HLMIADAKNKIKSPEELRKTIAKIKAEKLLGIEKLPEIYILAVLNMILMG-------DGS 443

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI  G +   D    +             K +  +        N      G GL  +  
Sbjct: 444 SNIINGDSTQFDGKYKQG------------KMKDKEFPANVFLLNPPYSAPGKGLNFVEK 491

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
                     +K++      G+AA+++  +       G       + +L  + + A + +
Sbjct: 492 A--------LSKMK-----SGKAAVLIQENAGSTQGDGYT-----KKILNKNTLIASIHM 533

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRIINDDQRR 450
            TDLF   +++ T +++       +    V+ I+ ++       R +  +   + D    
Sbjct: 534 STDLFIGKSSVQTAIYVFDVGIPHDTEKLVKFIDFSNDGYARQNRKKSSQSVNLKDADNA 593

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +       R     + ++  +    + +   +   +   +   G     +      + P 
Sbjct: 594 K------ERYAELVNLVVRGKGKDDKNLNYYKDCYVEDYITSEGNDWTYSQHKKIDIKPT 647

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
              F   I + M  QI      E     + KS E
Sbjct: 648 ENDFKKIIKEYMAWQISNLIRNEDIYPWTNKSPE 681


>gi|315453673|ref|YP_004073943.1| adenine-specific DNA-methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132725|emb|CBY83353.1| Type IIS restriction enzyme M protein (Mod),Site-specific
           DNA-methyltransferase (Adenine-specific) [Helicobacter
           felis ATCC 49179]
          Length = 687

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 96/323 (29%), Gaps = 76/323 (23%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   ++  L +      ++  +  +TPR+VV L   L     D+           ++D 
Sbjct: 336 DIAGRLFNTLTKWLNVPDNKKNDVVLTPREVVDLMVELAQVNKDSF----------VWDY 385

Query: 213 TCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             G+G FL  +MN +                           G E   E + + +  ML+
Sbjct: 386 AAGSGAFLISSMNKMLKDCEEKITEPRARADKINKIKNEQMLGIEKNTEIYLMGILNMLL 445

Query: 262 RR------LESDPRRDLSK----NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                   L  D   D       N +QG    +           L NPP+  K +     
Sbjct: 446 LGDGSTNFLHRDSLEDFEAKKPINYEQGDLKGEPFNAN----VFLLNPPYSAKGKG---- 497

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                                         +  +  L     GRA +++  +        
Sbjct: 498 -----------------------------FIFVERALERMEKGRAVVIIQENAGSGNGWP 528

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
                    +LE+  + A + +P DLF   +++ T +++            V+ I+ +  
Sbjct: 529 YTAQ-----ILEHSTLVASIKMPLDLFVGKSSVQTAIYVFEVGTPHSEDKLVKFIDFSHD 583

Query: 431 W--TSIRNEGKKRRIINDDQRRQ 451
               + R + +    + D    +
Sbjct: 584 GYTRAARKKARASTNLRDTDHAK 606


>gi|86741365|ref|YP_481765.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86568227|gb|ABD12036.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 746

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 44/263 (16%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                + +++ L  R+    S    +   PR V  L   L                 T+ 
Sbjct: 182 DRHGHAELFDALRARYREVCSRQVAEP--PRAVGELMVTL-------AGLRGRSGAATVL 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG GG                +        GQ++ P    V   G+L+R  ++    
Sbjct: 233 DPACGIGG-----------LLEAARAAGAGRLLGQDVNPTMARVSAVGLLLRGGDARIVA 281

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                   G +L    F G+R    L  PPFG++     + +           +  G+P 
Sbjct: 282 --------GDSLLAGTFAGERADAVLCAPPFGQRSWGYDELLGAPW-------WRHGVPP 326

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             +  + ++ +           G +  +++ ++           +     LL    + A+
Sbjct: 327 RGEPELAWVQYCLAH----ARDGAQVLVIMPAAAASRRAGRRIRAN----LLRAGELRAV 378

Query: 391 VALPTDLFFRTNIATYLWILSNR 413
           + LP  LF     A  LW+L   
Sbjct: 379 LGLPPGLF-PAGSAPDLWVLRRG 400


>gi|323439091|gb|EGA96821.1| hypothetical protein SAO11_2090 [Staphylococcus aureus O11]
          Length = 491

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 99/314 (31%), Gaps = 58/314 (18%)

Query: 76  AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
            G   YN  +  L          N         ++   I  D   +   ++L    L Y 
Sbjct: 232 DGDKIYNAVQMYLKQNADIRPAKN-----GEILESFMFIKNDLKLNRIHSQLNMTPLKYF 286

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
             K  +    +       ++ + Y   + ++G          +TPR + +L   L+    
Sbjct: 287 SVKLKNKFVHN----DMDILGSFYGEFV-KYGGNDGNALGIVLTPRHITNLMCELI---- 337

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETH 252
                 S      + DP CG+GGFL  AMN +   AD     K       HG EL     
Sbjct: 338 ------SINHTDFVLDPCCGSGGFLVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLF 391

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDA 311
                 M++R        D   N+++      D  +   + +  L NPP+ +   K+   
Sbjct: 392 TTATTNMILRG-------DGKSNLRRDDVFHVDKEYYKDKINKILLNPPYSQAKTKNLSH 444

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           +                          +  +   LE    GG  AAI+  S+ +      
Sbjct: 445 LS------------------------EISFIKESLEYMKTGGKLAAIIPQSTMI---GKT 477

Query: 372 SGESEIRRWLLEND 385
             +   +R +LE  
Sbjct: 478 KNDKNYKREILEKH 491


>gi|329123455|ref|ZP_08252019.1| type IIS restriction enzyme M protein [Haemophilus aegyptius ATCC
           11116]
 gi|327471037|gb|EGF16492.1| type IIS restriction enzyme M protein [Haemophilus aegyptius ATCC
           11116]
          Length = 686

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 138/436 (31%), Gaps = 84/436 (19%)

Query: 129 KAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++ L     K    + ++    +       ++  +    G    +  +  +TP  V  L 
Sbjct: 317 ESQLKRVFIKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDVVLTPSYVATLL 376

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------ADCGSH 233
             L     D+           ++D   G+ G L  AMN +                  +H
Sbjct: 377 AKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKNSITSRDELRQKEAH 426

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF- 292
            K   +L   G E+    + + +  M++    S    + +      S      F  K F 
Sbjct: 427 IKAHQLL---GVEILSSVYMLAILNMILMGDGSSNVLNKNSL----SDFEGKGFEDKAFP 479

Query: 293 -HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               + NPP+ K+                    G G+  +        +++ NK      
Sbjct: 480 ADAFILNPPYSKE--------------------GNGMIFVEKA-----LNMMNK------ 508

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
             G AA+++  S            EI + +L+   + A + +P D+F   +++ T +++ 
Sbjct: 509 --GYAAVIIQDSA-----GTGKAKEINQRILQKHSLIASIKMPADIFIGKSSVQTAIYVF 561

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              +  E +  V+ I+ T+      +  K +   N        + Y          ++D 
Sbjct: 562 KVGEKHEEKQLVKFIDFTNDGYKRSSRKKAKASTNLRNVDHATERYQE--------LVDL 613

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             FG   +         +I DK  ++   A   W   +   +      L    + +  Y 
Sbjct: 614 VKFGKGELNHFTE--NEYIEDKISVSGDNAGCDW-NFTQHKKIDTKPTLADFKKTVADYL 670

Query: 531 WAESFVKESIKSNEAK 546
             E       +S + K
Sbjct: 671 AWEVSQLLKKESEQGK 686


>gi|54020633|ref|YP_116154.1| hypothetical protein mhp646 [Mycoplasma hyopneumoniae 232]
 gi|53987806|gb|AAV28007.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 529

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/446 (16%), Positives = 136/446 (30%), Gaps = 88/446 (19%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R++ S  ++   +  TP  +  L   L+         +   M   + DPTCG+G FLT+A
Sbjct: 9   RKWNSADAKEKGEVFTPDHIAQLMYDLI---------QVDAMNDVVLDPTCGSGTFLTNA 59

Query: 224 M-----------------NHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           M                     +  S+   K        G E       +    ML+   
Sbjct: 60  MANMFQDVYSFFKNKKLSKEKEEQYSNQVCKDIKSNKLIGIEFNEFNATLAGINMLLHG- 118

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 D S NI Q     +      ++   L NPPF +K                    
Sbjct: 119 ------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------------ 154

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                         L  +   LE     G  AAIV  SS     +A     E  + +   
Sbjct: 155 -------------ELKFVYVTLENLKEKGKIAAIVPKSSLNGRVKAN---VEYLKKIFMM 198

Query: 385 DLIEAIVALPTDLFF-RTNIATYLWIL----------------SNRKTEERRGKVQLINA 427
             +  I++LP D+F     + T + +L                 N++ EE    + LI+ 
Sbjct: 199 AKVSHIISLPRDVFQPNAGVNTSIIVLEKYSQEKIKKIQKLASKNKEIEEHTQNIFLIDF 258

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           +D      NE + +      + +++  I   + +   +   + R       +     R  
Sbjct: 259 SDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQALKRNLRFDEELSFERFNTNRTF 318

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA--ESFVKESIKSNEA 545
            I +      ++ +   + LS +     L        +   + +   +  +    K  + 
Sbjct: 319 NIKESVFKKYMKENFASKVLSGIENQVILKKKNLSKYKNIKFKFFAIDKILDFISKGKQK 378

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRA 571
           +++  K    F         +KD   
Sbjct: 379 QSIDRKLENKFEKGIPIIIAKKDNNG 404


>gi|332358995|gb|EGJ36816.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus sanguinis SK49]
          Length = 693

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 131/412 (31%), Gaps = 68/412 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV---KVAGYSFYNTSEYSLSTLGST 94
             L + L            E  ++         ++V    + G        +     G++
Sbjct: 196 LFLFKYLSDIGVLNGENSFEYIVSLYEMEGYSTAYVLGKYLEGARKTMVKLFPKGMDGTS 255

Query: 95  NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                +   I     N     ++ D  F S I   EK    Y    N S           
Sbjct: 256 IINGKVFH-IERDEQNEFVSVDNTDTVFKSVILEFEKYDKKYGKFLNISK---------- 304

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
              S ++E  ++   S+       F TP  +V    +++                T+ DP
Sbjct: 305 DFKSKLFETFMKN--SDDKSDMGQFFTPLKIVDEMVSMV----------DISEGMTICDP 352

Query: 213 TCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLI--- 261
            CG G FL +A+    +     S  K+   +   G      E +  T  +  A  LI   
Sbjct: 353 ACGVGKFLLEAVEKRIEDSYSYSKGKLTSKIRFFGYDKMMSEKDDITIILAKANTLIYFS 412

Query: 262 ---------RRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                    + +++  +  L+ +     ++  + +     R+   L+NPP+ +  E    
Sbjct: 413 ELFQQNNSFKDVQTIAKILLNDSFYLHKSMLGTLENLEENRYDLILANPPYYQSKEMSDL 472

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           A             G G+        LFL  +   ++     GG A IVL      N   
Sbjct: 473 A----KATDIYKYGGSGV------EALFLEWIMRSVK----HGGVANIVLPDGIFSNHAN 518

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
              +      L E   I+A+++LP + FF T   TY+  +  +   E    +
Sbjct: 519 KKLKE----KLKELFFIDALISLPVNAFFNTPKKTYILTIRKKTENEIENNI 566


>gi|294783025|ref|ZP_06748349.1| type IIS restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479903|gb|EFG27680.1| type IIS restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
          Length = 682

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 63/443 (14%), Positives = 137/443 (30%), Gaps = 79/443 (17%)

Query: 120 FSSTIARLEKAGLLYKIC--KNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            S  I +        K    K    + ++    +       ++  +    G    +  + 
Sbjct: 302 LSDNINKPVNGESQLKRIFSKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFTQDKLNDV 361

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHK 235
            +TP  V +    L     D+           ++D   G+ G L  AMN +  D     K
Sbjct: 362 VLTPSYVANFLVKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKDKIK 411

Query: 236 IPPIL----------VPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSK 284
            P  L             G E+    + + +  M++     S+     S     G+    
Sbjct: 412 SPQELEQKTLKIKAEQLLGLEVLSNIYMLAILNMILMGDGSSNILNKDSLRDFNGNYAFG 471

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +          + NPP+  +                               M+F+    +
Sbjct: 472 EENKKFPATAFVLNPPYSAEGNG----------------------------MIFVEKALS 503

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
            +E      G AAI++  S            E  + +LE + + A + +P DLF   +++
Sbjct: 504 LME-----KGYAAIIIQHSA-----GSGKAKEYNKKILEKNTLLASIKMPLDLFIGKSSV 553

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            TY+++    +  ++   V+ I+ ++   +  +  K    + D  R +           +
Sbjct: 554 QTYIYVFRIGEVHQKDEIVKFIDFSNDGYTRSDRKKASNNLKDTDRAK----------ER 603

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +  M+D   FG  ++ +             G    E    W + +P+     ++  K  +
Sbjct: 604 YQEMVDLVRFGKSKLNIFTEKEY-----YEGYIDPENGSDWNQSTPVDTKPTIEDFKKTV 658

Query: 524 QQIYPYGWAESFVKESIKSNEAK 546
                +  +        ++   K
Sbjct: 659 ADYLAWEVSNLLKNTERENESLK 681


>gi|288870250|ref|ZP_06409683.1| putative type II restriction-modification enzyme [Clostridium
           hathewayi DSM 13479]
 gi|288867882|gb|EFD00181.1| putative type II restriction-modification enzyme [Clostridium
           hathewayi DSM 13479]
          Length = 889

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 105/320 (32%), Gaps = 50/320 (15%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            A ++ +I +     +   +      + N +E L+    + + + A  F TP  +     
Sbjct: 9   NAKIVREIVELLQAYKFRYEQ-KHEFLGNFFELLL---NTSMKQEAGQFFTPVPITRFII 64

Query: 189 A---LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------------- 229
           +   L       +      ++ T+ D  CG+G FLT+ M  +                  
Sbjct: 65  SSLPLKEFVQGKINSRERNVLPTVMDYACGSGHFLTEYMEQLQHVLDEKLDISHAAPDIR 124

Query: 230 ------CGSHHKIPPILVPHGQELEPETHAVCV----------AGMLIRRLESDPRRDLS 273
                  G+          +G +L+                  A ++     ++  +   
Sbjct: 125 KQVSAWQGAVKFAWAKDSVYGIDLDNRLVKTTKVSAFFNGDGEANIIWANGLANFEKAEE 184

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                  T   D     +F   +SNPP+        +A +   + GE           + 
Sbjct: 185 YRGLLRQTQHYDRKNNGQFDILISNPPYSV------EAFKSTLQYGEETFELYDNITDNS 238

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +  L     +++     GG A ++L SS L NG   S   EI   + +   ++AIV L
Sbjct: 239 SEIECL--FVERMKQLLKVGGWAGVILPSSILSNGGIYSKAREI---IFKYFRVKAIVEL 293

Query: 394 PTDLFFRTNIATYLWILSNR 413
            +  F +T   T +  L  R
Sbjct: 294 GSGTFMKTGTNTVVLFLERR 313


>gi|303235246|ref|ZP_07321864.1| conserved domain protein [Finegoldia magna BVS033A4]
 gi|302493560|gb|EFL53348.1| conserved domain protein [Finegoldia magna BVS033A4]
          Length = 154

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 108 SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLI 163
            D+ K +FED D +S+       EK   L  I      I     +        + YE+LI
Sbjct: 22  EDDIKGLFEDVDTTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYLI 81

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG    + 
Sbjct: 82  FNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPTCGERVIIV 131


>gi|189462166|ref|ZP_03010951.1| hypothetical protein BACCOP_02848 [Bacteroides coprocola DSM 17136]
 gi|189431139|gb|EDV00124.1| hypothetical protein BACCOP_02848 [Bacteroides coprocola DSM 17136]
          Length = 712

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 140/490 (28%), Gaps = 118/490 (24%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVREK--YL 60
              + + +  WK ++ +  D    +      +IL        +  L      V E+   L
Sbjct: 166 QKLSDIISERWKISDLIKKDKLVNERKSLKDLILEME-----DEVLAGAGVDVFEEVFKL 220

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFD 119
            F     ++ES  K          E+       T  +  L++      +  + +F ED  
Sbjct: 221 IFTKLYDEMESGRKPDRNL-----EFRNYGDTETELKEKLQTLFDQAKEKWQGVFTEDAK 275

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              T + L       +  K F+            V+   +E+LI +           + T
Sbjct: 276 ILLTPSHLSVCVASLQDVKLFNS--------NLDVVDEAFEYLINK---SSKGEKGQYFT 324

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR V+ +   +L          +P     + D   G+ GF    + HV       K    
Sbjct: 325 PRYVIDMCVKML----------NPKADEKMIDTAAGSCGFPVHTIFHVWQKILEAKGLKR 374

Query: 240 LVPH------------------GQELEPETHAVCV-AGML----------IRRLESDPRR 270
                                   + + +   V     ++          +  L+ +   
Sbjct: 375 SHLFTLEEKPAECSDYVQNNVFAIDFDEKAVRVARTLNLIAGDGQTNVMHLNTLDYERWD 434

Query: 271 DLSKNIQQGSTLSKDLFTGKR------------FHYCLSNPPFGKKWEKDK--------- 309
           +  K+     T S+     K+            F   ++NPPF    ++ +         
Sbjct: 435 ETVKDENWSDTYSEGWKKLKKMRAEKNSNRDFTFDIVMANPPFAGDVKESRILAKYDLSR 494

Query: 310 -DAVEKEHKNGELGRFGPGLPKISDG---------SMLFLMHLANKLELPPNG------- 352
             ++EK            G P   +           M        KL+   N        
Sbjct: 495 SVSLEKLKNVPSGATITQGEPTFPEALANSGETVYQMADGTFRKTKLKQASNMSRDVLFV 554

Query: 353 ---------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
                    GGR AIVL           S +  +R ++ +   I A++ L  ++F   T 
Sbjct: 555 ERNIDFLKSGGRMAIVLPQGRF----NNSSDKVLREYIADRCRILAVIGLHGNVFKPHTG 610

Query: 403 IATYLWILSN 412
             T +  +  
Sbjct: 611 TKTSVLFVQK 620


>gi|222481388|ref|YP_002567624.1| N-6 DNA methylase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454764|gb|ACM59027.1| N-6 DNA methylase [Halorubrum lacusprofundi ATCC 49239]
          Length = 694

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 147/426 (34%), Gaps = 64/426 (15%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEK 129
           F K+   S   + +        ++ + +LE Y +   D  + +AI+E  +  S I     
Sbjct: 229 FYKILESSPTYSKDIDPLVPRPSHVQEDLEEYFSHLVDEVDFEAIYEHDNIYSEIPLDAV 288

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            G L          +L        V+  IYE +I    ++      ++ TP  +  L T 
Sbjct: 289 EGKLRAFILELDDYDLS--QFNSDVIGRIYEGVIP---ADRRRAMGEYYTPPAICDLITR 343

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQE 246
           L +   D           T+ DP CG+GGFL  A + + D            +    G E
Sbjct: 344 LTVQSSD----------DTVLDPACGSGGFLVSAYHRLHDKLPEPAGGHEHILSHLSGVE 393

Query: 247 LEPETHAVCVAGMLIRRLES-------------DPRRDLSKNIQQ----GSTLSKDLFTG 289
           +      +    + I+ L +             D ++      ++    G T +++    
Sbjct: 394 INRFPAHLTAINLAIQDLSAYTEWVDVEIKDFFDVKKYQKLGGREMAGAGGTETEEGLGD 453

Query: 290 KR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +R  +   + NPP+ ++   D     + H + +           S        +      
Sbjct: 454 QRGGYDAVVGNPPYIRQENIDDKDKVRNHLSSDE---IDAEDMSSYSD--IYAYFITHGT 508

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G     + S   L       GE +++++LL+N  I AI+     +F    + + +
Sbjct: 509 EFLADGVDFGFITSDRWL---DTQYGE-DVQQFLLDNYEIRAIIKFDRQVFDDALVDSSV 564

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            IL  +  +  R            +++    + ++ ++ D    I++     E  + +++
Sbjct: 565 VILRRQSDKSERD-----------SNVAKFLRLKQELSIDDIAAIVE-----EEAEPNKL 608

Query: 468 LDYRTF 473
           +    +
Sbjct: 609 VTNDDY 614


>gi|282164224|ref|YP_003356609.1| hypothetical protein MCP_1554 [Methanocella paludicola SANAE]
 gi|282156538|dbj|BAI61626.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 589

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 28/262 (10%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           S  A    TP  V        +DP  A       +   ++D +CGTG FL  A+  +   
Sbjct: 37  SRDAGVVYTPLPVARYICRQAIDPYLATGNSIENI--RVFDSSCGTGIFLQAALEELYRL 94

Query: 231 GSHH---------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +           K        G +++  +   A     ML+    S+  + +  N+   
Sbjct: 95  RAEKSDLSEYELKKQIIEKCLFGMDIDQYSADAAFLRLNMLL---PSNGEKQIKVNVACD 151

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           + L         F   + NPP+ +      D      +  +  R    L    +G++   
Sbjct: 152 NALFATGVG--TFDVIVGNPPYMRIKSMSGDLKTSLPEKVKASR----LYNYQEGNLNLY 205

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDL 397
                +        GR  +++ SS L    +     ++R+ + +   +E +V +P  + +
Sbjct: 206 KLFIERNLGFLKESGRMGLIIPSSFLNEATS----EKLRKHIFDTCSLEEVVEIPERSRI 261

Query: 398 FFRTNIATYLWILSNRKTEERR 419
           F   N AT + +L   K    R
Sbjct: 262 FPGVNQATAIIVLKKSKASHGR 283


>gi|332367332|gb|EGJ45067.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus sanguinis SK1059]
          Length = 693

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 132/412 (32%), Gaps = 68/412 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV---KVAGYSFYNTSEYSLSTLGST 94
             L + L            E  ++         ++V    + G        +     G++
Sbjct: 196 LFLFKYLSDIGVLNGENSFEYIVSLYEKEGYSTAYVLGKYLEGARETMVKLFPKGMDGTS 255

Query: 95  NTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                +   I     N     ++ D  F S I   EK    Y    N S           
Sbjct: 256 IINGKVFH-IERDEQNEFVSVDNTDTVFKSVILEFEKYDKKYGKFLNISK---------- 304

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
              S ++E  ++   S+       F TP  +V    +++                T+ DP
Sbjct: 305 DFKSKLFETFMKN--SDDKSDMGQFFTPLKIVDEMVSMV----------DISEGMTICDP 352

Query: 213 TCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQ-----ELEPETHAVCVAGMLI--- 261
            CG G FL +A+    +     S  K+   +   G      E +  T  +  A  LI   
Sbjct: 353 ACGVGKFLLEAVEKRIEDSYSYSKGKLTSKIRFFGYDKMMSEKDDITIILAKANTLIYFS 412

Query: 262 ---------RRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                    + +++  +  L+ +     ++  + +     R+   L+NPP+ +  E  + 
Sbjct: 413 ELFQQNNSFKDVQAIAKTLLNDSFYLHKSMLGTLENLEENRYDLILANPPYYQSKEMSEL 472

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           A             G G+        LFL  +   ++     GG A IVL      N   
Sbjct: 473 A----KATDIYKYGGSGV------EALFLEWIMRSVK----HGGVANIVLPDGIFSNHAN 518

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
              +      L E   I+A+++LP + FF T   TY+  +  +   E    +
Sbjct: 519 KKLKE----KLKELFFIDALISLPVNAFFNTPKKTYILTIRKKTENEIENNI 566


>gi|156308544|ref|XP_001617681.1| hypothetical protein NEMVEDRAFT_v1g225887 [Nematostella vectensis]
 gi|156195235|gb|EDO25581.1| predicted protein [Nematostella vectensis]
          Length = 336

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 97/314 (30%), Gaps = 78/314 (24%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA-----------------------DCGSHHKIPP 238
           +P     + D  CG+GGFL   + HV                        +     +   
Sbjct: 6   NPNEKTRVLDXACGSGGFLVMVLEHVRKQIAKELYPDLEDVLLAEKFNTYEVNERVRQYA 65

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-------- 290
               +G + +P+        M++          ++           +L   K        
Sbjct: 66  ETNIYGFDFDPDLKKAARMNMVMAGDGHANIFHVNSLDYPDWEDPNELNKIKASIKQSLE 125

Query: 291 ---------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG- 334
                          +F    +NPPFG K + +K+  +K             L K SD  
Sbjct: 126 RMADIDNNYTDDARGKFDMIFTNPPFGAKVKVEKEIADK-----------YDLSKYSDAP 174

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LF+      L+     GG+ AIVL    L N         +R W+LEN  I A V L 
Sbjct: 175 EVLFIEACYKLLK----PGGKMAIVLPDGILGNPNTLP----VREWILENFKILASVDLA 226

Query: 395 TDLFFRT-NIATYLWILSNRKTEERRG--------KVQLINATDLWTSIRNEGKKRRIIN 445
            + F     +   L  L  +   +R          +V +  A  L    R      R   
Sbjct: 227 VEAFLPQVGVQASLLFLQKKTDNDRNIARETDEDYEVFMAIAEKLGKDRRGNPIYVR--- 283

Query: 446 DDQRRQILDIYVSR 459
           D+   +IL    +R
Sbjct: 284 DEDGAEILFTVDNR 297


>gi|312126614|ref|YP_003991488.1| N-6 DNA methylase [Caldicellulosiruptor hydrothermalis 108]
 gi|311776633|gb|ADQ06119.1| N-6 DNA methylase [Caldicellulosiruptor hydrothermalis 108]
          Length = 911

 Score = 78.3 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 153/471 (32%), Gaps = 83/471 (17%)

Query: 131 GLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             L+   +    I L  +  +  + V+   +E +++   +E  +    + T +++V    
Sbjct: 319 EKLFYAVEKLQEISLTENVHSKEEDVLGLFFESILQ---NEFKQSKGQYFTHKNIVRFLI 375

Query: 189 ALLLDPDDALFK--ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----- 241
             L     A++K  ++      + DP  G+G FL +AM  +      +K    L      
Sbjct: 376 YALELDKLAIYKLNQTYPHFPYIIDPAAGSGTFLIEAMKIITKEVLKNKDKLKLTRALEE 435

Query: 242 ------------------PHGQELEPETHAVCVAGMLIRRLESD---------------- 267
                              +G E            M++    +                 
Sbjct: 436 KIKDLEDPNRKHHWAEDYIYGIEPNTRLGLAAKLNMILHGDGNMNIFIEDGLMPFKINGK 495

Query: 268 -------PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                    +D+    +   T         RF   +SNPPF  K E          ++  
Sbjct: 496 AFYTRKWKGKDVGLLAESEETNIYPKPINGRFDVVMSNPPFSIKIEA--------MRSYR 547

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             R         +   LF+      L       GR  +VL  S             IR +
Sbjct: 548 HIRDTFVFYDKKNSENLFVERWFQLL----APKGRLGVVLPESVFDTKEN----LYIRNF 599

Query: 381 LLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEE-RRGKVQLINATDLWTSIRNEG 438
           L +   I+AI++LP + F   T+    L I   +  EE +  + +     + +  +RN  
Sbjct: 600 LYKYFKIKAIISLPKEAFEPYTSTKVSLLIAERKTDEEVKAWEDKWREYANEYNKLRNSK 659

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-----FSRMLDY---RTFGYRRIKVLRPLRMSFIL 490
             +  I +D   +ILD +    +       +S++L +          I+   P +     
Sbjct: 660 LIKFFIEND---KILDSFRKLLDNHNIEIDYSKVLVHDLLDDNLKNEIEAKIPQKNKNKF 716

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            K  +  +E+     KL  L      +ILK  ++Q YP        KE ++
Sbjct: 717 -KDLVEEIESFKNKYKLDELDTEENKEILKRFLKQFYPQEQEFKSFKELLE 766


>gi|149176155|ref|ZP_01854771.1| type I restriction-modification system, M subunit, putative
           [Planctomyces maris DSM 8797]
 gi|148845022|gb|EDL59369.1| type I restriction-modification system, M subunit, putative
           [Planctomyces maris DSM 8797]
          Length = 104

 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 15/117 (12%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K +  ++KEH+ +G  GRFGPGLP++SDGS+LFL    +K+    +GG
Sbjct: 1   MLSNPPFGVEWKKIQKEIKKEHEQDGFNGRFGPGLPRVSDGSLLFL---ISKMRPAKDGG 57

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            R  IVL+ SPLF G AGSGESEIRR+ L   +IE          F+T I     + 
Sbjct: 58  SRFGIVLNGSPLFTGNAGSGESEIRRYPLR--IIET---------FKTVICCCRLLF 103


>gi|153955553|ref|YP_001396318.1| Type I methyltransferase subunit-related protein [Clostridium
           kluyveri DSM 555]
 gi|219855947|ref|YP_002473069.1| hypothetical protein CKR_2604 [Clostridium kluyveri NBRC 12016]
 gi|146348411|gb|EDK34947.1| Type I methyltransferase subunit-related protein [Clostridium
           kluyveri DSM 555]
 gi|219569671|dbj|BAH07655.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 611

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 122/392 (31%), Gaps = 61/392 (15%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D     T   +  A  +  + +    I    +     V+ + ++ ++R   SE+ +  
Sbjct: 129 FNDEKLKKTPDIVFNANKVKYVVEALQEISFTSNKY--DVLGDFFQKIVR---SELKQTK 183

Query: 175 EDFMTPRDVVHLATALLLDPDDAL----FKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
             ++T  ++V      +   + A+     KE    +  + DP+CG+G +    M  +   
Sbjct: 184 GQYLTHHNIVDFIVKAIDVENLAIDLINGKEGRPRLPYIIDPSCGSGTYQIQCMKEITRS 243

Query: 231 --------------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR- 263
                                                 +G E+ P+        M+    
Sbjct: 244 ILSDMDKREKIQIADDIDDFLSVNFPKHKQNAWAKDYIYGIEIYPDLAMATKVNMVGHGD 303

Query: 264 -----------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                      ++     +      + ++     +  ++F   +SNPPF      D++  
Sbjct: 304 GSANILPNDGLIDFADYPNGKLLNVKKTSNVYPKYVNEQFDIVVSNPPFS--ITVDRETA 361

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++  K    G       K  +  ++        +        GR  +VL  S        
Sbjct: 362 KQFPKLYIQGEKIQKSLKKENKKIIDTENLFIERWYQLLRPKGRLGVVLPESVFDLSSN- 420

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG-KVQLINATD 429
               EIR ++ +   ++A+V+LP   F   T   T L     +  +E             
Sbjct: 421 ---KEIRLFIFKYFWVKAVVSLPYLAFAPYTMTKTSLLFAQKKTEKEVEDWNDNWDWYNK 477

Query: 430 LWTSIRNEGKKRRIIND-----DQRRQILDIY 456
            +  I+N+  K +   +     D   +IL  Y
Sbjct: 478 EFIKIKNQLDKLKKKKETSSLHDNFVEILKKY 509


>gi|93007190|ref|YP_581627.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92394868|gb|ABE76143.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 600

 Score = 77.9 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 106/285 (37%), Gaps = 35/285 (12%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F + +S  P G    K        H +  +  +   +          ++HL  +    
Sbjct: 222 KTFDHGVSFSPMGVMVPK--------HISDNIDSYDRFIIPTKKVESANILHLIKQCR-- 271

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G   + +    L++      E ++R++L++  +++A+++LP+ ++  T + T L +
Sbjct: 272 ----GTVVVSVPEGFLYSTM----EKDLRQYLVDQGMLKAVISLPSGIWTGTAVKTSLLL 323

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML- 468
           +   +       V+ I+ T        +  K R+++      IL+   S +    +  + 
Sbjct: 324 I---EPNGNNQSVRFIDVT--GEEFIEKTTK-RLLSLSNIDIILEYLASDKELDCATSVS 377

Query: 469 -------DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK-LSPLHQSFWLDILK 520
                  DY     R +   +  R++ IL ++    L+  + + + LS         +L+
Sbjct: 378 SSLIQKNDYDLSVGRYLLDPKEKRVNKILSESTTVTLDRIVRFERGLSVKPDEGDYTVLE 437

Query: 521 PMMQQIYPYGWAESFVKESI--KSNEAKTLKVKASKSFIVAFINA 563
               ++   G      KE+   +S  AK        + I+  +  
Sbjct: 438 VGASELNDIGDISVPTKEANISESERAKNQTGFLQPNDIIFILKG 482


>gi|291558112|emb|CBL35229.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 667

 Score = 77.5 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 59/434 (13%), Positives = 137/434 (31%), Gaps = 79/434 (18%)

Query: 129 KAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++ L     K    + ++    +       ++  +    G    +  +  +TP  V    
Sbjct: 299 ESQLKRVFVKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFTQDQLNDVVLTPSYVATFL 358

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPPILVPH--- 243
             L     D+           ++D   G+ G L  AMN +  D  +  K P  L      
Sbjct: 359 CRLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKNTIKSPEQLAIKSAN 408

Query: 244 -------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+    + + V  M++    S    +       G+   +           +
Sbjct: 409 IKANQLLGLEILSNVYMLAVLNMIMMGDGSSNILNKDSLNFDGNYGFEKTDEKFPADAFI 468

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  +                               M+F+    + +       G A
Sbjct: 469 LNPPYSAEGNG----------------------------MIFVEKALSMM-----SKGYA 495

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415
           AI++ +S      +        + +L++  + A + +P DLF   +++ T +++    + 
Sbjct: 496 AIIIQNSAGSGKASSYN-----KNILKHSTLLASIKMPIDLFIGKSSVQTNVYVFRVGEA 550

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            ++   V+ I+ ++   +  +  K  + + D  R +           ++  ++D   FG 
Sbjct: 551 HQKDDVVKFIDFSNDGYTRSDRKKASKNLFDTDRAK----------ERYQEVVDLVRFGK 600

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            ++ +             G         W + +P+        L+   + +  Y   E  
Sbjct: 601 AKLNIFTEKEY-----YEGHIDPANGADWNQTAPID---TKPTLEDFKKTVSDYLAWEVS 652

Query: 536 VKESIKSNEAKTLK 549
                + NE ++L 
Sbjct: 653 TLLKNQDNEDESLG 666


>gi|126654680|ref|ZP_01726214.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
 gi|126623415|gb|EAZ94119.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
          Length = 883

 Score = 77.5 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 111/340 (32%), Gaps = 63/340 (18%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +     + K     +  + FS +E         ++ + +E + R       +    F TP
Sbjct: 307 NRNKFPVNKLVYTVQQLETFSFLEGRSSLDGKDILGDFFESITR---DGFKQTKGQFFTP 363

Query: 181 RDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
             +V+ L  AL +D        +   +  + DP+ G+G FL +AM  +     + +   I
Sbjct: 364 TPIVNFLLYALQIDNLAIEKLNNDKELPFIIDPSAGSGTFLVEAMKIITKELKYKQHGQI 423

Query: 240 LV-------------------------PHGQELEPETHAVCVAGMLIRRLES------DP 268
                                       +  EL  +        M++    S      D 
Sbjct: 424 KSSRGVKDRFEELFMPDRKENKWAREYLYACELNFDLGTASKVNMILHGDGSTNIFVQDG 483

Query: 269 RRDLSKNIQQ----------GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                  I++             L  D     +F   ++NPPF          ++++ + 
Sbjct: 484 LLPFRYYIKETKPNYLETVSSDILYNDKEVNAKFDVVITNPPFSVD-------LDRQTQR 536

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                F  G  K S+   LF+      L+     GGR  ++L  S             IR
Sbjct: 537 EVKNIFLFGDRKNSEN--LFIERYYQLLK----EGGRLGVILPESVFDTTEN----KYIR 586

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
            +L +   I+A+++LP  +F   T+  T L     +   E
Sbjct: 587 LFLFKYFQIKAVISLPKIVFEPFTSTKTSLLFAQKKTKLE 626


>gi|67920388|ref|ZP_00513908.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
 gi|67857872|gb|EAM53111.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
          Length = 201

 Score = 77.5 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 20/187 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+  LE  +    +K    G    +     +  G  +        S       R
Sbjct: 35  LLFIKRLDD-LELAKE---KKAKRLGKPVQNPTFLPEKQGARWSYFKNLDDSEEMLYMVR 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +    +I      A            +  +    LL  +      I +           +
Sbjct: 91  DVAFPFIKELGGKAGETAYTRHMKDAVFLISNPALLSNVVAQIEKIPMD----DRDTKGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  S        F TPR ++ L   L+           P  +  + DP CGT 
Sbjct: 147 LYEYMLSKIASAG--QNGQFRTPRHIIKLMVELM----------QPSPLEIVCDPACGTA 194

Query: 218 GFLTDAM 224
           GFL    
Sbjct: 195 GFLVAVA 201


>gi|72080630|ref|YP_287688.1| putative type II DNA modification enzyme: methyltransferase
           [Mycoplasma hyopneumoniae 7448]
 gi|71913754|gb|AAZ53665.1| putative type II DNA modification enzyme: methyltransferase
           [Mycoplasma hyopneumoniae 7448]
          Length = 669

 Score = 77.5 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 130/417 (31%), Gaps = 81/417 (19%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              + +       ++  +    G    +  +  +TP  V  L   L     ++       
Sbjct: 321 FFKNGLEIDFAGKLFNEMYSWLGFSEDKKNDVVLTPPYVAKLLAKLARVNQNSY------ 374

Query: 205 MIRTLYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHA 253
               ++D   G+ G L  AMN +            +  +           G E+ P+ H 
Sbjct: 375 ----VWDFATGSAGLLVAAMNEMIADAEAKSKSAKELEAKKIKIKTEQLLGIEILPKIHM 430

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + +  M++     D   +L          +K+ F    F   + NPP+            
Sbjct: 431 LAILNMILMG---DGSSNLLHKDSLKDFDNKEKFPANAF---VLNPPYSAPGNG------ 478

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                                 M F+    + ++      G  AI++ SS          
Sbjct: 479 ----------------------MNFVEKALSMMK-----NGYGAIIIQSSA-----GSGK 506

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWT 432
             +    +L+N+ + A + +P DLF   +++ T++++    ++  + G V+ I+ ++   
Sbjct: 507 AKDFNTEILKNNTLLASIKMPIDLFLGKSSVQTHIYVFQVGQSHNKEGLVKFIDFSNDGY 566

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
              N  K    + D                ++  ++D    G +++ +     +      
Sbjct: 567 KRTNRKKAAINLVD----------NGDAIARYQEVVDLVHIGKQKLNL-----LDTNCYF 611

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
             +   ++   W K   +     +   K  + +   +   E      I S + +  K
Sbjct: 612 EDVIDPKSGTDWNKTKQVDLKPTITDFKKSIGEYLAWEVTEIIRNTKIGSEKEEITK 668


>gi|256855107|ref|ZP_05560468.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8]
 gi|256709620|gb|EEU24667.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8]
          Length = 682

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 135/408 (33%), Gaps = 84/408 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                ++  +    G    +  +  +TP  V  L   L     D+           ++D 
Sbjct: 338 DFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVDKDSY----------VWDF 387

Query: 213 TCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             G+ G L  AMN +            +              G E+    + + V  M++
Sbjct: 388 ATGSAGLLVSAMNEMLNDAKAKITSPDELYKKEAEIKANQLLGLEILSSVYMLAVLNMIM 447

Query: 262 RRLESDPRRD----LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               S    +       N + G   +++ F    F   + NPP+  +             
Sbjct: 448 MGDGSSNIINEDSLTQFNGKYGYGKTEEKFPATAF---VLNPPYSAEGNG---------- 494

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE-SE 376
                             M+F+    + +       G A++++       G AGSG+ SE
Sbjct: 495 ------------------MVFVKRALSMM-----DKGYASVII------QGSAGSGKASE 525

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           I + +L+++ + A + +P DLF   +++ TY+++    +  E    VQ I+ T+   +  
Sbjct: 526 INKEILKSNRLLASIKMPIDLFVGKSSVQTYIYVFRVGEAHENDYTVQFIDFTNDGYTRS 585

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           N  K    + D    +           K+  ++D   +G  ++       +S      G 
Sbjct: 586 NRKKSSNNLRDTDHAK----------EKYQEVVDLVKYGKSKL-----QYLSESEYYEGH 630

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
             +     W + +P+     L+  K  +     +  +     ++ +  
Sbjct: 631 IDVAKGDDWNQSAPIDLKPTLNDFKKTIGDYLAWEVSNLLRNQTAEDE 678


>gi|319897061|ref|YP_004135256.1| type i restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
 gi|317432565|emb|CBY80925.1| putative type I restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
          Length = 686

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 66/436 (15%), Positives = 138/436 (31%), Gaps = 84/436 (19%)

Query: 129 KAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++ L     K    + ++    +       ++  +    G    +  +  +TP  V  L 
Sbjct: 317 ESQLKRVFIKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDVVLTPSYVATLL 376

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------ADCGSH 233
             L     D+           ++D   G+ G L  AMN +                  +H
Sbjct: 377 AKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKNTITSPDELRQKEAH 426

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF- 292
            K   +L   G E+    + + +  M++    S    + +      S      F  K F 
Sbjct: 427 IKAHQLL---GVEILSSVYMLAILNMILMGDGSSNVLNKNSL----SDFEGKGFEDKAFP 479

Query: 293 -HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               + NPP+ K+                    G G+  +        +++ NK      
Sbjct: 480 ADAFILNPPYSKE--------------------GNGMIFVEKA-----LNMVNK------ 508

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
             G AA+++  S            EI + +L+   + A + +P D+F   +++ T +++ 
Sbjct: 509 --GYAAVIIQDSA-----GTGKAKEINQRILQKHSLIASIKMPADIFIGKSSVQTAIYVF 561

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              +  E +  V+ I+ T+      +  K +   N        + Y          +++ 
Sbjct: 562 KVGEKHEEKQLVKFIDFTNDGYKRSSRKKAKASTNLRNVDHATERYQE--------LVNL 613

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             FG   +         +I DK  ++   A   W   +   +      L    + +  Y 
Sbjct: 614 VKFGKGELNHFTE--NEYIEDKISVSGDNAGCDW-NFTQHKKIDTKPTLDDFQKTVADYL 670

Query: 531 WAESFVKESIKSNEAK 546
             E       +S + K
Sbjct: 671 AWEVSQLLKKESEQGK 686


>gi|169830730|ref|YP_001716712.1| hypothetical protein Daud_0539 [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637574|gb|ACA59080.1| hypothetical protein Daud_0539 [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 148

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          M  F    A    FIW  A+ L G ++   +  V+LP T+LRRL+C LEPT+  V EK  
Sbjct: 6  MNNFGEKVA----FIWSVADLLRGPYRPNQYKDVLLPMTVLRRLDCVLEPTKDQVLEKIK 61

Query: 61 AFGGS 65
              S
Sbjct: 62 TLQES 66


>gi|332202746|gb|EGJ16815.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 179

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 15/177 (8%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F     ++T + I
Sbjct: 5   KPGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAILI 62

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGK 463
            +        G    +   D+     +   KR+ I+D+    I++ +        R+   
Sbjct: 63  FTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQRTD 118

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            S  +           +          +K        +I  +K++ L +     + +
Sbjct: 119 QSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEP--TEIILKKINDLEKEIQAGLAE 173


>gi|301301104|ref|ZP_07207262.1| N-6 DNA Methylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851300|gb|EFK79026.1| N-6 DNA Methylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 694

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 101/315 (32%), Gaps = 67/315 (21%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I L    +       I   L      E  +  +  +TPR V  L   L            
Sbjct: 348 IPLLESDLQLDFTGKILNSLNDWVSIENDKQNDVVLTPRYVTKLMVKLT----------R 397

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPH-------GQELEPET 251
             M   ++D   G+GGFL  AM+ +     +     K     + H       G EL    
Sbjct: 398 TDMNSYVWDTAMGSGGFLVSAMDEMFKDAKEKIQDKKKLEEKLEHIKKEQLLGVELLGNI 457

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
           + + V  M++         D +  ++ G +           +  L NPP+          
Sbjct: 458 YILAVLNMILMG-------DGASKMENGDSHKIYDNLEFPANVFLLNPPYSAD------- 503

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                        G G   +++                    G  AI++  +        
Sbjct: 504 -------------GKGFNFVAEA-------------FSKMQKGYGAILIQENAGSGAGLP 537

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
                  + +L+++ + A + +P DLF   +++ T +++    K  + +  V  I+ ++ 
Sbjct: 538 YT-----KKILDHNTLVASIHMPNDLFNGKSSVQTAIYVFKVNKPHDVKKAVTFIDFSED 592

Query: 431 WTSIRNEGKKRRIIN 445
             S +N  K  + +N
Sbjct: 593 GYSRQNRKKASQEVN 607


>gi|282851931|ref|ZP_06261291.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
 gi|282556940|gb|EFB62542.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
          Length = 693

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 120/406 (29%), Gaps = 82/406 (20%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF-SSTIARLEKAG 131
           ++  G +       + +     N    +   I SF +  KA  E     +S ++ +    
Sbjct: 265 LQTEGVTQLKPENLTSNDDEDDNDGQIIIRKIKSFLNKRKASQEKMKMITSLLSPIFTKR 324

Query: 132 LLYKICKNFSGI------------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           LL+K     S I             L    +       I   L      E  +  +  +T
Sbjct: 325 LLWKNINGQSLIKSLYTDVYKDILPLLESDLQLDFTGKILNSLNDWVSIENDKQNDVVLT 384

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR +  L   L     D+           ++D   G+GGFL  AM+ +            
Sbjct: 385 PRYITQLMVKLTHTDKDSY----------VWDTAMGSGGFLVSAMDIMIKDAKDKIQDSE 434

Query: 235 ------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          G EL    + + V  M++         D S N++   + +     
Sbjct: 435 KLKEKINQIKKHQLLGIELLGNIYILAVLNMILMG-------DGSSNMRNDDSHNVYKRL 487

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               +  L NPP+  +                    G G   + +               
Sbjct: 488 KFPANVFLLNPPYSAE--------------------GKGFNFVKEA-------------F 514

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
                G  A+++  +               + +LEN+ + A + +P DLF    ++ T +
Sbjct: 515 SQMHSGYGAVLIQENAGSGNGLPYT-----KEILENNTLVASIHMPNDLFNGKASVQTAI 569

Query: 408 WILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRIINDDQRRQ 451
           ++         +  V  I+ +D       R +  +   + D    +
Sbjct: 570 YVFKVNDPHNEKKAVTFIDFSDDGYTRQNRKKSSQAVNLRDTDNAK 615


>gi|291527610|emb|CBK93196.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 941

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 95/309 (30%), Gaps = 56/309 (18%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            ++LHP      +M   Y   + ++ S  ++     +TP+ +  L   +          E
Sbjct: 333 KMKLHPKI---DIMGTFYTVFL-KYASGDAKDKGIVLTPKHITELFCDIAEHYLGKKLNE 388

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHK-IPPILVPHGQELEPE 250
                  + D   GTG FL  A+  +           D     K         G E EPE
Sbjct: 389 KT----KVLDICTGTGAFLISALARMDSNIDALTISEDEKKERKAYVRSNCLIGVEREPE 444

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH-------------YCLS 297
             ++  A M             S  ++    +++++ T ++                 + 
Sbjct: 445 MFSLAYANMRFHGDGRSNLYACSSLLKHNGIVNENIKTKEKITLKEELESLEEKPIVGMV 504

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+           EK  K+GE                  L  + + LE    GG    
Sbjct: 505 NPPYALLNS------EKNDKSGE-----------KQTGQSELDFVYSLLEYLKEGGIGIV 547

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSNRKT 415
           I+  S       +      +R+ +LE   + A + +P  LF      + T + +      
Sbjct: 548 IIPMSCAFSKTDS-----LMRKEILEKHTLLATMTMPARLFQDSDVGVNTCIMVFRAHIP 602

Query: 416 EERRGKVQL 424
            +   +   
Sbjct: 603 HKDSSQSVF 611


>gi|327390240|gb|EGE88583.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
          Length = 179

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F     ++T + I
Sbjct: 5   KPGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAILI 62

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGK 463
            +        G    +   D+     +   KR+ I+D+    I++ +        R+   
Sbjct: 63  FTK----TGNGGTDKVWFYDMKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQRTD 118

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            S  +           +          +K      E  +             L  L+ ++
Sbjct: 119 QSFFVPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLAELEKLL 178

Query: 524 Q 524
           +
Sbjct: 179 K 179


>gi|121534426|ref|ZP_01666249.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
 gi|121306919|gb|EAX47838.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
          Length = 664

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 49/298 (16%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            + ++  IYE       +        + TP  ++    +  ++               + 
Sbjct: 93  KEFLLGEIYER-----TAMGRRAQGRYYTPAKIIDFIMSWTVEECAVTL----NPYVRVL 143

Query: 211 DPTCGTGGFLTDAMNHVADC----------------GSHHKIPPILVPH---GQELEPET 251
           DP CG G FL  A + +                    S   I   ++ +   G +++   
Sbjct: 144 DPACGCGNFLVKAYDVLRQKFWDARPILQTRYPEIDWSDDGIHRHIIRYNLWGADIDGTA 203

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---------LFTGKRFHYCLSNPPFG 302
             +    +L++R E+   RDL  NI+Q  +L +           F    + Y + NPP+ 
Sbjct: 204 AKIAALSLLLKRPEAS--RDLIPNIRQCDSLRRPDENSGSSDKTFWAAAYDYVVGNPPYL 261

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
               +   A++  + K            KIS  + LF+      L+     GGR   ++ 
Sbjct: 262 SFGLRGGQALDPGYGKYLRQAFVACAEYKISYYA-LFMQRGIELLK----PGGRLGFIVP 316

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            S L     G   S++RR+LL+   ++AIV +   +F +  +   +  +  ++ + R+
Sbjct: 317 DSFLL----GRYFSKLRRYLLDYTAVKAIVHIAAPVFRQAALGFSVIGIFEKELDGRK 370


>gi|161528118|ref|YP_001581944.1| restriction modification system DNA specificity subunit
           [Nitrosopumilus maritimus SCM1]
 gi|160339419|gb|ABX12506.1| restriction modification system DNA specificity domain
           [Nitrosopumilus maritimus SCM1]
          Length = 730

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 113/372 (30%), Gaps = 62/372 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           LE  +   +        D DF           L+ KI        L    + +  +    
Sbjct: 201 LEELLHQINSKENNFIFDLDFK------LPHDLISKIVFKLQKYSLTKSQLKNMPLGF-- 252

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
                     +S+    ++TP  +    + L                  + D  CG+G F
Sbjct: 253 ------SQGILSKSTGAYLTPDAISEFMSHL----------FKINSKMKVLDLACGSGAF 296

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE--SDPRRDLSKNIQ 277
           L +A    A               G +   +   +      +  ++  S    D    ++
Sbjct: 297 LVNAGKFGA------------SVVGVDANRQIANIAKINCYLNGIKNASVICADSLGPLE 344

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             + +S        F   L++PPFG +  KD         +G   RF   L       +L
Sbjct: 345 NLAKMSSGNIQTNSFDLVLTHPPFGLRLTKDYANFSMLTISG--NRFMESLFIERSWELL 402

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                          GG+  I+L         +     +IR ++  N  +  I++LP   
Sbjct: 403 -------------KEGGKLIIILPEGI----TSNKSTRKIREFITTNFKVLGIISLPDYA 445

Query: 398 FF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           FF  ++I T + +L     +       +  A   +       K+  +  +    +IL+ +
Sbjct: 446 FFPYSSIKTTILVLEKLGPKIISNSYMIFTA---YAKNLGYDKQGILAKESDFSKILEDF 502

Query: 457 VSR-ENGKFSRM 467
               +  K S+ 
Sbjct: 503 NKFLQTNKGSKF 514


>gi|307942694|ref|ZP_07658040.1| putative type I restriction-modification system methyltransferase
           subunit [Roseibium sp. TrichSKD4]
 gi|307774099|gb|EFO33314.1| putative type I restriction-modification system methyltransferase
           subunit [Roseibium sp. TrichSKD4]
          Length = 999

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 128/420 (30%), Gaps = 62/420 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
              R L       R+ + E  ++F  +    +S  K          E +   L  T   +
Sbjct: 178 LFTRFLAD-----RNLLPEHMMSFEYAGDLFDSREKA---------EATSRWLDETFNGD 223

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L      F+  ++ ++  F   S   +     L       +  ++     +P  V+S  
Sbjct: 224 LLPLSDGLFNSLSEQVY--FVLGSVSRKAPDDQLFLGWEAKWDNLDF--AHIPVGVLSQA 279

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE  +R   SE  +    + TPR +  L          AL  E+  +   + DP  G G 
Sbjct: 280 YELYLRSHASERQKKQGGYYTPRPIADLMVR---ASIRALQHENKCVDAKILDPAAGAGV 336

Query: 219 FLTDAMNHV--ADCGSHHKIPPILVPH--------GQELEPETHAVCVAGMLIRRLESDP 268
           FL  A   +         K P              G +++         G+ +  +E DP
Sbjct: 337 FLLTAFRELVAEKWRFDGKRPNTKTLRTILYNQITGLDIDEAALRFAALGLYLMSIELDP 396

Query: 269 RRDLSKNIQQGSTLSKDLF-----------------------TGKRFHYCLSNPPFGKKW 305
                  ++  +     L                           ++   + NPP+    
Sbjct: 397 TPKPVDKLRFKNLRGNVLHRLVADGDTEGAQLGSLGPLVGEEHNAKYDIVIGNPPWASGT 456

Query: 306 E-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +  D + V+   K     R       +    +L L  +   ++      G+ +  L +  
Sbjct: 457 KLPDWNLVQNNVKQIAEKRGIKNSKPLLPNEVLDLPFVWRAMDWAKPD-GQISFALHARM 515

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA---LP-TDLFFRTNIATYLWILSNRKTEERRG 420
           LF    G  E+  R  + E   I +IV    L  T ++   +    L    NR      G
Sbjct: 516 LFQQGDGMAEA--RASIFEALDITSIVNGVELRQTKVWPEISAPFCLLFARNRMPSASAG 573


>gi|196229254|ref|ZP_03128119.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196226486|gb|EDY20991.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 683

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 114/399 (28%), Gaps = 102/399 (25%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD------PDDALFKESPGMI 206
             +   ++  +R        G   ++TP  V      +         P+     +    +
Sbjct: 296 DALGRAFDVFLRGNFDSKG-GLGIYLTPAPVKQSMLDIAFHDILAETPELLAAYKGDKPV 354

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVC 255
               DP CGT GF   A+  +    +   +  +               G +  P    + 
Sbjct: 355 FRYCDPACGTYGFGVVAVGRLQRALAELNLDDVKRKKLFEDHLTYSFCGADSAPVMVTLA 414

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG------------K 303
              M +           ++     ++L+ D      F    +NPPFG            +
Sbjct: 415 RVNMALLG------APKARIFYVQNSLTTDQLEPGTFDLICTNPPFGTPKFKKGQHEARE 468

Query: 304 KWEKDKDAVEKEHKNG------------------------ELGRFGP-------GLPKIS 332
           ++E +   + K  +                          E+ R+ P       G     
Sbjct: 469 RYETEMGEILKRFRTDLEPDGDKTAYTFVAGMGWFPIGKKEVYRYTPTVAGKAMGASPDK 528

Query: 333 DGSMLFL--------MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            G    +        +   ++       GGR  I+L    L      SGE  +R +++  
Sbjct: 529 KGRWTPISPTSIDPAVLFIDRCLELLKPGGRLIIILPDGVL----CNSGERYVREYIMGK 584

Query: 385 DL------------IEAIVALPTDLF--FRTNIATYLWILSNRK---------TEERRGK 421
                         ++A+V+LP+D F    T   T    L  R           +E +  
Sbjct: 585 KDPVTGEFHGGKAIVKAVVSLPSDTFKLSGTGAKTSYLYLQKRHARPNDPEHFADEPQKD 644

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           V +  A  L   ++N  +       +    I   Y+  E
Sbjct: 645 VFMGVADHLGYEVKNNVEDYSKGVPNDLAGITGSYIRGE 683


>gi|256848825|ref|ZP_05554259.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-1A-US]
 gi|256714364|gb|EEU29351.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-1A-US]
          Length = 688

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 114/371 (30%), Gaps = 69/371 (18%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N R    S I       + IF                 +Y    N   + L    +    
Sbjct: 296 NARKAENSQINMIMALLQPIFTKQALWQPKNGESLIHKIYVQVYN-DILPLLESNLHLDF 354

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              I   L      +     +  +TPR + ++   L     D+           ++D   
Sbjct: 355 TGKILNSLNDWVSIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAM 404

Query: 215 GTGGFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G+ GFL  AM+ +     +            +        G E+    + + V  M++  
Sbjct: 405 GSAGFLVSAMDIMVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG 464

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S    + + +    +            +  L NPP+  + +                 
Sbjct: 465 DGSSNMVNGNSHELYKNYTQFPA------NVFLLNPPYSAEGKG---------------- 502

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                        +F+    +++       G AAI++  +               + +L+
Sbjct: 503 ------------FIFVQEALSQM-----TKGYAAIIIQENAGSGNGLPYT-----KNILK 540

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT-DLWTSI-RNEGKK 440
           N+ + A + +PTDLF    ++ T +++    +  E    V  ++ + D +T + R +  +
Sbjct: 541 NNTLVASIHMPTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQ 600

Query: 441 RRIINDDQRRQ 451
           +  + D    +
Sbjct: 601 KVNLRDTDHAK 611


>gi|34540358|ref|NP_904837.1| type I restriction-modification system, M subunit [Porphyromonas
           gingivalis W83]
 gi|34396670|gb|AAQ65736.1| type I restriction-modification system, M subunit, putative
           [Porphyromonas gingivalis W83]
          Length = 648

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/488 (14%), Positives = 138/488 (28%), Gaps = 114/488 (23%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              + + +  W  A+ +  D   ++      +IL        +  L      V E+    
Sbjct: 102 QKLSDILSERWTIADLIEKDKLISERKSLKDLILEME-----DEVLAGAGVDVFEEVFKL 156

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFDFS 121
             + +  E     +G +     E+       T  +  +++      D  + +F  D    
Sbjct: 157 IFTKLFDEM---ESGRNNERNLEFRNYGDTETELKERIQNLFDKARDKWEGVFSPDAKIQ 213

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            T + L       +  K F+            V+   +E+LI +           + TPR
Sbjct: 214 LTPSHLSVCVASLQDVKLFNS--------NLDVVDEAFEYLINK---SSKGEKGQYFTPR 262

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V+ +   +L          +P     + D   G+ GF    + HV +     K      
Sbjct: 263 YVIDMCVKML----------NPTANEKMIDTASGSCGFPVHTIFHVWENILKEKGLERSH 312

Query: 242 PH------------------GQELEPETHAVCVAGMLIRR-----LESDPRRDLSKNIQQ 278
                                 + + +   V     LI       +      D  +  Q 
Sbjct: 313 LFTLEQKPAECTDYVNDNVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEQN 372

Query: 279 GSTLSK------------------DLFTGKRFHYCLSNPPFGKKWEKDK----------D 310
             +                     D +    F   ++NPPF  + ++ +           
Sbjct: 373 LDSEDWQDTYFEGWKKLKKLRTRKDSYRDFTFDIVMANPPFAGEVKESRILAKYDMSRSM 432

Query: 311 AVEKEHKNGELGRFGPGLPKISDG---------SMLFLMHLANKLELPPNG--------- 352
           ++EK     +      G P  S+           M    +   KL+   N          
Sbjct: 433 SLEKVKIAPKGATIVEGEPTFSEALANTGETIYQMSDGTYRKTKLKQAGNMSRDILFVER 492

Query: 353 -------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIA 404
                  GGR AIVL           S +  +R ++ +   I A+V L  ++F   T   
Sbjct: 493 NLDFLKPGGRMAIVLPQGRF----NNSSDKALREYIADRCRILAVVGLHGNVFKPHTGTK 548

Query: 405 TYLWILSN 412
           T +  +  
Sbjct: 549 TSVLFVQK 556


>gi|332639087|ref|ZP_08417950.1| hypothetical protein WcibK1_10375 [Weissella cibaria KACC 11862]
          Length = 154

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 12/146 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T     + + +W+ A+ L G    + +  V+L    L+ +  +      ++     
Sbjct: 1   MAKKTAEL-KIEDALWQAADQLRGSMDASQYRNVVLGLIFLKYVSDSFNEKYESLINSDY 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
                + D+      A   F+   E     + S         T +     I   +D  K 
Sbjct: 60  PEDAEDRDM----YTAENIFWLPKEARWDVIASAAKTPEIGETIDKAMEAIERENDQIKG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKN 139
           +      S  + +     ++ +  ++
Sbjct: 116 VLPKNYASPDLDKGADVKIMDRFFRH 141


>gi|262046554|ref|ZP_06019515.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-3A-US]
 gi|260573003|gb|EEX29562.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-3A-US]
          Length = 688

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 114/371 (30%), Gaps = 69/371 (18%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N R    S I       + IF                 +Y    N   + L    +    
Sbjct: 296 NARKAENSKINMIMALLQPIFTKQALWQPKNGESLIHKIYVQVYN-DILPLLESNLHLDF 354

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              I   L      +     +  +TPR + ++   L     D+           ++D   
Sbjct: 355 TGKILNSLNDWVSIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAM 404

Query: 215 GTGGFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G+ GFL  AM+ +     +            +        G E+    + + V  M++  
Sbjct: 405 GSAGFLVSAMDIMVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG 464

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S    + + +    +            +  L NPP+  + +                 
Sbjct: 465 DGSSNMVNGNSHELYKNYTQFPA------NVFLLNPPYSAEGKG---------------- 502

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                        +F+    +++       G AAI++  +               + +L+
Sbjct: 503 ------------FIFVQEALSQM-----TKGYAAIIIQENAGSGNGLPYT-----KNILK 540

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT-DLWTSI-RNEGKK 440
           N+ + A + +PTDLF    ++ T +++    +  E    V  ++ + D +T + R +  +
Sbjct: 541 NNTLVASIHMPTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQ 600

Query: 441 RRIINDDQRRQ 451
           +  + D    +
Sbjct: 601 KVNLRDTDHAK 611


>gi|256843430|ref|ZP_05548918.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus 125-2-CHN]
 gi|293379931|ref|ZP_06626038.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|256614850|gb|EEU20051.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus 125-2-CHN]
 gi|290923507|gb|EFE00403.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
          Length = 688

 Score = 75.6 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 114/371 (30%), Gaps = 69/371 (18%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N R    S I       + IF                 +Y    N   + L    +    
Sbjct: 296 NARKAENSKINMIMALLQPIFTKQALWQPKNGESLIHKIYVQVYN-DILPLLESNLHLDF 354

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              I   L      +     +  +TPR + ++   L     D+           ++D   
Sbjct: 355 TGKILNSLNDWVSIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAM 404

Query: 215 GTGGFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G+ GFL  AM+ +     +            +        G E+    + + V  M++  
Sbjct: 405 GSAGFLVSAMDIMVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG 464

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S    + + +    +            +  L NPP+  + +                 
Sbjct: 465 DGSSNMVNGNSHELYKNYTQFPA------NVFLLNPPYSAEGKG---------------- 502

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                        +F+    +++       G AAI++  +               + +L+
Sbjct: 503 ------------FIFVQEALSQM-----TKGYAAIIIQENAGSGNGLPYT-----KNILK 540

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT-DLWTSI-RNEGKK 440
           N+ + A + +PTDLF    ++ T +++    +  E    V  ++ + D +T + R +  +
Sbjct: 541 NNTLVASIHMPTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQ 600

Query: 441 RRIINDDQRRQ 451
           +  + D    +
Sbjct: 601 KVNLRDTDHAK 611


>gi|330899953|gb|EGH31372.1| Type I restriction-modification system methylation subunit
          [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 71

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
          +   L   ++K A+ L G    ++F + I     L+R     E     V  + +  G S 
Sbjct: 4  TLQQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFEERYEEVVAQEIRAGKSQ 63

Query: 67 IDL 69
           + 
Sbjct: 64 AEA 66


>gi|148265621|ref|YP_001232327.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146399121|gb|ABQ27754.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 738

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 121/400 (30%), Gaps = 103/400 (25%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +T   L++ I    D A+  +E   F            L     +  G++L    +   V
Sbjct: 248 DTETELKAKIQELFDKARGKWEGV-FPDGAKIDLTPSHLAVCVSSLEGVKLFNSNL--DV 304

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   +E+LI +           + TPR V+ +   +L          +P    ++ D   
Sbjct: 305 VDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------NPQEHESIIDTAA 351

Query: 215 GTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQEL------EPETHAVCV 256
           G+ GF    + HV            +D  +  +  P    + Q+       + +   V  
Sbjct: 352 GSCGFPVHTIFHVWHQIRRDLGLPISDHFTTEQRTPRETDYVQDKVFAIDFDEKAVRVGR 411

Query: 257 -AGML--------IRRLESDPRRDLSKNIQQGSTL--------------SKDLFTGKRFH 293
              ++        +     D  R   K   Q  T               +K+      F 
Sbjct: 412 TLNLIAGDGQTNVLHLNTLDYERWDEKTKDQNWTDIYSEGWKKLRKQRAAKEQDRDFSFD 471

Query: 294 YCLSNPPFGKKWEKDK----------------DAVEKEHKNGEL---------------- 321
             ++NPPF    ++ +                  V++  KN E                 
Sbjct: 472 ILMANPPFAGDIKETRILAKYELARTVSLDKISKVDENDKNIEDATQRVPTFPECLRASF 531

Query: 322 --------GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                   G F     K  +     ++ +   L      GGR AIVL           S 
Sbjct: 532 DTIYKMADGSFRKVKIKDQNNVGRDILFIERNLSFIKP-GGRMAIVLPQGRF----NNSS 586

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
           +  IR +L ++  I A+V L  ++F   T   T +  +  
Sbjct: 587 DKYIREYLADHCRILAVVGLHGNVFKPHTGTKTSVIFVQK 626


>gi|255325531|ref|ZP_05366633.1| type I restriction enzyme EcoprrI M protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297469|gb|EET76784.1| type I restriction enzyme EcoprrI M protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 151

 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 23/147 (15%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------E 49
           M+  T  A   SL   +   A DL G     DF   +L     R L   L         +
Sbjct: 1   MSPSTKKAQRDSLHKTLDSIANDLRGKVDGWDFKAYVLGTLFYRYLCDHLVHIINTEQHD 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------- 98
              S      L+   +  + E++ ++ GY    +  +S    G+ +  +           
Sbjct: 61  AGDSEFDYSELSDEVAEFERENYTQMVGYYILPSQLFSTFVQGAADNVDLNIELDKALRA 120

Query: 99  -NLESYIASFSDNAKAIFEDFDFSSTI 124
               S  A  +D+ K +F+DFD +S  
Sbjct: 121 VEASSADAESADDFKGLFQDFDVNSNK 147


>gi|288561747|ref|YP_003429153.1| type II DNA modification (methyltransferase subunit) [Bacillus
           pseudofirmus OF4]
 gi|288548379|gb|ADC52261.1| type II DNA modification (methyltransferase subunit) [Bacillus
           pseudofirmus OF4]
          Length = 645

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 120/368 (32%), Gaps = 61/368 (16%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRR 165
            +    I     F  T   L+   +L  I K      I     +    +M + Y   + R
Sbjct: 240 EEKLNIILNQITFLETQLDLKNNNILRDILKELRDEVIPYFDTSSNYDIMGSFYSEFL-R 298

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +    +      +TP  +  L T L+                 ++DP  G+G FL   MN
Sbjct: 299 YAGISNVKNGIVLTPAHITQLFTELVPI----------RPSDVIFDPAAGSGAFLIAGMN 348

Query: 226 HV---------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKN 275
            +         AD  S           G EL    + + ++ ML     +S      S +
Sbjct: 349 ALIKKIENSNLADKQSKILNVKQKQLIGFELNSTMYTLSISNMLFRHDGKSQLYNLDSFS 408

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            +   TL +    G +      NPP+G K  K  D   KE                    
Sbjct: 409 EEAKQTLRRLAQDGIKPTIGFVNPPYGGKETKS-DPTPKE-------------------- 447

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
                   + L+L  +      I+++    +     +     R  +L    ++ ++ +P 
Sbjct: 448 -------ISFLKLLLDSVSDYVIMIAPLSTYFKDETT-----RNGILAQHTLKYVINMPA 495

Query: 396 DLFF-RTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQIL 453
           DLF       T + +    + +  + +  +++   D +   +N+G+        + +Q  
Sbjct: 496 DLFQPNAATITAISVFHVGQPQGDQ-ETIMVDLVDDGFVLSKNKGRTDIFNRWPEIKQ-- 552

Query: 454 DIYVSREN 461
           D++   EN
Sbjct: 553 DLFNKLEN 560


>gi|294789766|ref|ZP_06754996.1| type IIS restriction enzyme M protein [Simonsiella muelleri ATCC
           29453]
 gi|294482272|gb|EFG29969.1| type IIS restriction enzyme M protein [Simonsiella muelleri ATCC
           29453]
          Length = 312

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 115/351 (32%), Gaps = 63/351 (17%)

Query: 209 LYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVA 257
           ++D   G+GG L   MN +            +              G E+ PE + + V 
Sbjct: 10  VWDFATGSGGLLVAGMNLMLQDAKTSINSPDELRQKENQIKAEQILGIEVLPEIYMLAVL 69

Query: 258 GMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
            M++     S+  ++ S     G                L NPP+  +            
Sbjct: 70  NMILMGDGSSNILQENSLTNFNGKYGYGKENQNFPADVFLLNPPYSAQ------------ 117

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                   G G+  +        +++ +K        G A+I++  S            E
Sbjct: 118 --------GNGMIFVEKA-----LNMMHK--------GYASIIIQDSA-----GSGKAKE 151

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
             + +L+   + A + +P DLF   +++ T +++    +  E +  V+ I+  +      
Sbjct: 152 FNQRILQKHTLLASIKMPNDLFIGKSSVQTAIYVFKIGEPHEAKFPVKFIDFQNDGYKRS 211

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           N  K +   N                 ++  ++D   FG   +K+    +  ++ D   L
Sbjct: 212 NRKKAKASSNLQNIDH--------AEERYEELVDLVKFGSGSLKLF--GQNEYVEDTIAL 261

Query: 496 A--RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
              +  AD  + +   +     L   K  +     +  A+   KE  KS +
Sbjct: 262 EGDKFGADWNFAQHKKIDAKPTLADFKKTVSDYLAWEVAQLLAKEDDKSGK 312


>gi|224418935|ref|ZP_03656941.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 266

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++F        L ILS ++ +    KV  I+A   +       +           +I 
Sbjct: 1   PRNIFPHQVEEFSLLILSKQENK----KVFFIDAQKFYLKEGKYNRLTN------IDRIY 50

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQ 512
           D Y+S+++   SR++DYR       K     +   I D   L   LE     +++     
Sbjct: 51  DEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKD 110

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              +D     ++    YG++E F++ S KS++ +  K++     I+  +           
Sbjct: 111 EVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS------- 163

Query: 573 PVTDVNGEWIPDTNL 587
           P   + GE I D  +
Sbjct: 164 PKLAIIGERIGDKRV 178


>gi|108563890|ref|YP_628206.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837663|gb|ABF85532.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 136

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 21/145 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +W  A+ L G    +++   +L    L+ +                A   + 
Sbjct: 4   KKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARNDAK 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            + +S ++V    FY   E  L+  G     + L   IA  +D    + + +  DF+   
Sbjct: 51  NNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIADRNELEGVIDSVDFNDNT 107

Query: 125 A---RLEKAGLLYKICKNFSGIELH 146
                      L  + K F+ + L 
Sbjct: 108 KLGEGKAMIDTLSNLVKIFADLSLG 132


>gi|309809675|ref|ZP_07703531.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308170035|gb|EFO72072.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 172

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 12/131 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59
           T+       L   IW  A++L G     DF   +L     R +   L    +    +   
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTNYINHGEIEAGN 63

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
                  ++   +    E  V+  G+ F   SE  ++    +N         A  ++  +
Sbjct: 64  TDFDFAQMSDEEAEEAREGLVEEKGF-FILPSELFVNIKKKSNEDMEWAK--AHLNEKLE 120

Query: 113 AIFEDFDFSST 123
           ++F   + SS 
Sbjct: 121 SVFRHIEESSQ 131


>gi|134301999|ref|YP_001121967.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049776|gb|ABO46847.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 423

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 77/287 (26%), Gaps = 81/287 (28%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-------------------------- 237
                + DP  G+GGFL  A   V D      I                           
Sbjct: 8   KQNELICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKY 67

Query: 238 ------------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                                   G +  P    V    M++   +       +  +   
Sbjct: 68  EQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG-DGHNGIHHNDGLLNV 126

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN--------------------- 318
           + + ++      F   L+NPPFG    KD   V +E K                      
Sbjct: 127 NGIFRNC-----FDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEEL 181

Query: 319 ----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                  G+    L K  + S    +    +       GGR  IVL    L      S  
Sbjct: 182 KQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLKAGGRMGIVLPEGVL----NSSNL 237

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERR 419
            + R +      I  IV+LP DLF  +   + T L  L     EE+ 
Sbjct: 238 QKAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQE 284


>gi|210135639|ref|YP_002302078.1| type IIS R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133607|gb|ACJ08598.1| type IIS R-M system methyltransferase [Helicobacter pylori P12]
          Length = 678

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 119/346 (34%), Gaps = 66/346 (19%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++  A   ++ L     +    +  +    +       ++  + R       E  +  +T
Sbjct: 308 NNNKAINGESRLKRCFSEIVDSLGFYYKIGLSTDFTGKLFNEMYRWLPFTEDESNDVVLT 367

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----K 235
           P  V  L   L     D+           ++D   G+ G L  +MN + +         K
Sbjct: 368 PPYVATLLARLSKVNKDSF----------VWDFATGSAGLLVASMNLMIEDAKKRITSPK 417

Query: 236 IPPILVPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                + H       G E++P+ H + V  M++    S    +          ++   F 
Sbjct: 418 ELEEKIIHIKAEQLLGIEVKPDIHILAVLNMILMGDGSSQILNQDSLSGFDGKVNNKEFK 477

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   + NPP+                                  M+F+     K++ 
Sbjct: 478 ANAF---VLNPPYSASGNG----------------------------MVFVEQALAKMQ- 505

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
                G A++++ SS    G   + E  +R  +LE   + A + +P+DLF   +++ T++
Sbjct: 506 ----SGYASVIIQSS---TGSGNAKEYNVR--ILEKHTLLASIKMPSDLFIGKSSVRTHI 556

Query: 408 WILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRIINDDQRRQ 451
           ++    +  + + +V+ IN ++     + R + K    + D    +
Sbjct: 557 YVFRVNEKHDAKQRVKFINFSNDGYARANRKKAKASHNLKDTHNAK 602


>gi|268589806|ref|ZP_06124027.1| type I site-specific deoxyribonuclease, HsdR family [Providencia
          rettgeri DSM 1131]
 gi|291314794|gb|EFE55247.1| type I site-specific deoxyribonuclease, HsdR family [Providencia
          rettgeri DSM 1131]
          Length = 272

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          MT        L   IW  A D+ G     DF + +L     R +        +   E   
Sbjct: 1  MTSL-QQRVELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGDESVN 59

Query: 61 AFGGSNIDL------ESFVKVAGYSFYNTSEY 86
              S+ D       E  +K  GY  Y T ++
Sbjct: 60 YAAMSDDDENIKFAKEDAIKTKGYFLYPTRDW 91


>gi|254415121|ref|ZP_05028883.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177927|gb|EDX72929.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 664

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 123/418 (29%), Gaps = 73/418 (17%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           V E    F G +     FV   G       + ++       T N     +    +NA+ I
Sbjct: 16  VCEDKELFQGEDRVAHRFVSDGGMK---QWQETIKRYWIFATGNPYSPLLDMAYNNAQNI 72

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +  F     +    +      I   +     +   V   ++  +Y   + R   +  +  
Sbjct: 73  YAHFFTGRELFNWYQLNEQQLIMTLYQLSRFNFAGVDSDIVGTVYNTYVSR---KEKKEK 129

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TP ++V+     +     A      G  + L DP CG+G FL  A   +     ++
Sbjct: 130 GQYYTPPEIVNYILDEVGYVSGAGI---IGKNKRLIDPACGSGSFLVAAAKRLVSAYKNN 186

Query: 235 KIPPI----------LVPHGQELEPETHAVCVAGMLIRRLE------------------- 265
                              G +L P    +    +LI+ L+                   
Sbjct: 187 TDQIDDPVTVLERVQANLFGFDLNPFACYLAEVNLLIQVLDLVKLAYKKQQHQPIKRFHI 246

Query: 266 ------------------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
                             +    + S  + Q  + S +      F + ++NPP+G K   
Sbjct: 247 YNVDALARPAGTYRFALFNTLIAEESDQVDQIKSRSPNTSYANGFAFVVANPPYGAKLSD 306

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                 K     +      G P          +             G    +  ++ L  
Sbjct: 307 ----AYKNTLRADYADVFYGKPDT-------YIFFLKLGTELLAKNGSFGFITPNTYLMG 355

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS--NRKTEERRGKVQ 423
             + +    +RR LL    I  IV LP  ++   N+   L  L+  + +   R  KVQ
Sbjct: 356 INSAA----LRRELLNVGGIYQIVDLPQGIWADANVDCVLLFLNEEDDEKSRRNQKVQ 409


>gi|159030700|emb|CAO88373.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 81

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +     +FIW  A+ +   FK   +  VILPFT+LRR +C LEPT+  V   Y  +   
Sbjct: 2  NNFGEKVSFIWSIADLIRDTFKRGKYQDVILPFTVLRRFDCVLEPTKEEVLAAYNHYKDK 61

Query: 66 NIDLES-FVKVAGYSFYNT 83
            +L+    K +G++FYN 
Sbjct: 62 LDNLDPLLCKKSGFAFYNP 80


>gi|303258165|ref|ZP_07344173.1| type IIS restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
 gi|302859184|gb|EFL82267.1| type IIS restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
          Length = 686

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 116/389 (29%), Gaps = 74/389 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                ++  +    G    +  +  +TP  V  L   L                  ++D 
Sbjct: 342 DFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVAKLLVKLA----------RVDRNSYVWDF 391

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLI 261
             G+ G L  AMN +     +H   P                G E+ P  + + +  M++
Sbjct: 392 ATGSAGLLVAAMNEMLIDAKNHITSPDELARKEATIRAEQLLGLEVLPSIYMLAILNMIL 451

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D S NI    +L        ++ +      F                N   
Sbjct: 452 MG-------DGSSNILNKDSLHD---FDGKYGFGKITEKFPAS---------AFVLNPPY 492

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
              G G+  +                L     G AAI++  S            +  R +
Sbjct: 493 SAAGNGMIFVEKA-------------LGMMNKGYAAIIIQGS-----SGNGKAVDYNRRI 534

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+   + A + +P DLF   +N+ TY+++    +  +    V+ I+ ++   +  N  K 
Sbjct: 535 LKKHTLLASIKMPIDLFIGKSNVQTYVYVFRVNEPHQADDTVKFIDFSNDGYTRTNRKKA 594

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              + D    +           ++  ++    FG  ++K L            G    ++
Sbjct: 595 SVNLKDTDHAK----------ERYDEVVQLVRFGKDKLKYLTEKEY-----YEGKIDPKS 639

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              W + +P+     L   K  +     +
Sbjct: 640 GADWNQSAPVDTQPKLKDFKKTISDYLAW 668


>gi|198283262|ref|YP_002219583.1| type I restriction-modification system methylation subunit
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667778|ref|YP_002425844.1| hypothetical protein AFE_1415 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198247783|gb|ACH83376.1| type I restriction-modification system methylation subunit
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519991|gb|ACK80577.1| conserved domain protein [Acidithiobacillus ferrooxidans ATCC
          23270]
          Length = 88

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
          +   L   I+K A  L G    ++F + I     L+R     E  R+ V +  +  G + 
Sbjct: 4  TLPQLERHIFKAAGILRGKIDASEFKEYIFGMLFLKRCSDVFEQRRAEVIQLEIDAGKTP 63

Query: 67 IDLESFVKVAGY 78
           + E+  +   +
Sbjct: 64 AEAEASAENKRW 75


>gi|258452701|ref|ZP_05700700.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282924136|ref|ZP_06331811.1| type I restriction-modification system [Staphylococcus aureus
           A9765]
 gi|257859676|gb|EEV82525.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282592931|gb|EFB97933.1| type I restriction-modification system [Staphylococcus aureus
           A9765]
          Length = 197

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSFYNTSEYS---LSTLGSTNTRNNLESYIASFS 108
            + +  +  D E         +   GY       +S              +L + I    
Sbjct: 124 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRKVE 183

Query: 109 DNAKAIFEDFDF 120
            +      + DF
Sbjct: 184 TSTLGEESENDF 195


>gi|162448117|ref|YP_001621249.1| site-specific DNA-methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161986224|gb|ABX81873.1| site-specific DNA-methyltransferase [Acholeplasma laidlawii PG-8A]
          Length = 559

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 35/251 (13%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             +L+D   G GGFL   +N   +     +   +   +G E+    HA+    + I    
Sbjct: 114 GDSLFDLGSGLGGFLIGTLNLAQE-----RSIELSALYGVEINYNQHALSKMVLEI--FT 166

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D       N     T   +L   K F Y    PP G K   +        KN  L    
Sbjct: 167 FDSSVKSKINYANILTDKYELTYNKGFVY----PPLGMKLMGNDLNYISIFKNIVLSTR- 221

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                    + +  + +   L        RA  +++   LF+    + + + R  +L++ 
Sbjct: 222 ---------NSVEWIFIDKLLSNLKGEDARAVALVTGRTLFS----AVDRDYRNEILKSG 268

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++E I+ LP  +   T+I  +L I S          V+L +A+     + +  +K     
Sbjct: 269 MLEGIIELPQGIVDNTSIKLFLLIFSKNNK-----NVRLFDAS-----MFSSKRKFNGPI 318

Query: 446 DDQRRQILDIY 456
               +QI+D Y
Sbjct: 319 KVDVKQIIDFY 329


>gi|289449477|ref|YP_003475503.1| hypothetical protein HMPREF0868_1226 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184024|gb|ADC90449.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 230

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 21/219 (9%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPTRSAV 55
           M +   +  +L   + ++   + L        F     ++L    LR +    E    A+
Sbjct: 1   MAKKKTADKALNIDSILFNCRDYLRAARNSGSFFEKKDMMLTLVFLRFIGEKYEDGIEAL 60

Query: 56  REKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLGSTNT------RNNLESY 103
           R+  +  G    D             A  ++    E   ST+ +T         +   S 
Sbjct: 61  RKTLIEHGLDPDDENIRAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSR 120

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           + +     K  F    F++          +       S      +     ++  +YE+ +
Sbjct: 121 LEAEDPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGEEK---DLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKE 201
           + F    ++   +F TP   VV L  A++   +  L+++
Sbjct: 178 KEFAVNATKEEGEFYTPHHDVVKLIAAMIEPFEGTLYEK 216


>gi|119509079|ref|ZP_01628230.1| type II restriction enzyme, methylase subunit [Nodularia spumigena
           CCY9414]
 gi|119466245|gb|EAW47131.1| type II restriction enzyme, methylase subunit [Nodularia spumigena
           CCY9414]
          Length = 1018

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 77/518 (14%), Positives = 147/518 (28%), Gaps = 125/518 (24%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         +    L F     +L      A Y  YN+  +           +
Sbjct: 236 IFLRICEDREIEIYEQLL-NLLKFQNIYQELGRLFINADYR-YNSGLFYFQQEKGREQPD 293

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +    +           ED+   + I +L      Y+              +P  ++  +
Sbjct: 294 DFTLNL---------TIEDYPLRAIIKKLYPPESPYEF-----------SVIPVEILGQV 333

Query: 159 YEHLIRRFGSEVS-------------EGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +  +  +             +    + TP  +V       +       K     
Sbjct: 334 YEQFLGKIITLSASRQAVVEDKPEVRKAGGVYYTPSYIVDYIVKETIGKFLEGKKPEKVQ 393

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------------------- 240
             ++ DP CG+G FL  A   + D      +  +                          
Sbjct: 394 EMSIIDPACGSGSFLIVAYQFLLDWYLQQYLQNLKKYKNKIYQVTGNSWRLTSTERKRIL 453

Query: 241 --VPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLS 283
               +G +++ +        +L++ LE +                  DL  NIQ G++L 
Sbjct: 454 LAHIYGIDIDQQAVETTKLSLLLKVLEGESVETITKQLEFLKERALPDLDNNIQCGNSLI 513

Query: 284 K-----------------------DLFTG-------KRFHYCLSNPPFGKKWEKDKDAVE 313
                                   D  TG         F   + NPP+ +          
Sbjct: 514 DGEFYQNNQLDLLDEDTSERINIFDWETGFSAIMKRGGFDIVIGNPPYIRI------QAL 567

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           KE    E+  +         G+    +    K        GR   +L         A  G
Sbjct: 568 KEWAALEVEFYQEKYVSAKKGNYDIYVIFVEKGLNLLTKDGRLGFILPHKFF---NAQYG 624

Query: 374 ESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEE---RRGKVQLINATD 429
           E  IR ++ EN  +  I+      +F      T L  LS +K +    ++    +   +D
Sbjct: 625 EL-IRGFIAENKSLNQIIHFGDKQVFTDATTYTCLLFLSKQKNKSFEFKKIHSLIDWRSD 683

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
              +I  +      I+ ++     +  + R++  FS++
Sbjct: 684 ENKNIVRQIFPMSYISHEEW----NFVMGRDDKWFSKI 717


>gi|34541136|ref|NP_905615.1| type I restriction-modification system, M subunit [Porphyromonas
           gingivalis W83]
 gi|34397452|gb|AAQ66514.1| type I restriction-modification system, M subunit, putative
           [Porphyromonas gingivalis W83]
          Length = 1002

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 64/427 (14%), Positives = 121/427 (28%), Gaps = 57/427 (13%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             +  LE       + +  +      S  D+   V      F    ++    +      +
Sbjct: 193 LFILYLEDKGAAKEAGLYREIRKDAESYFDILDDVDATYKLFAKLQDHFNGNVFPI-IED 251

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                     +  K  F D D S      E   +               D +   ++S +
Sbjct: 252 EQSKVKKEHLEKIKKCFIDGDISGQPKLFENWRI------------FKFDFIQIELLSEV 299

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+ +     +  +    F TP  +V L        D    K        + DP CG+G 
Sbjct: 300 YENFLGEL--DTKKEKGQFYTPYTLVELILN-----DKLPIKNETNYNVKILDPACGSGI 352

Query: 219 FLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGMLIRRLESD 267
           FL ++   +     +     ++              G E++P    V    + +  +E  
Sbjct: 353 FLVESYKRLIRRWKNKNPEKVITFKELNDILVKNIFGIEIDPLAIKVTAFSLYLALVEHL 412

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             + L  +         D               + +    + +  + E  N  +G    G
Sbjct: 413 NPKKLWIDKTNKFPYLIDNPNDISIKEKKGKNLWCRDTIGEVNPDDFEKVNLVIGNPPFG 472

Query: 328 LPKISD-----------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             K+S            G  + L  L   +E  P+  G  A++ ++  L N +       
Sbjct: 473 TKKLSKSIMDYCVKYNFGKEMVLPFLHKSIEFCPD--GEIALIFNTKVLTNTK--KTYQN 528

Query: 377 IRRWLLENDLIEAIVAL------PTD----LFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            R WLL  + +E +  L      P +    LF        +      KT  +        
Sbjct: 529 FRHWLLNENYVEKLYNLSIFRKSPRNFGGQLFTSAIGPICIIYF-QAKTPPKASNTIEYW 587

Query: 427 ATDLWTS 433
           A   +  
Sbjct: 588 APKTYVK 594


>gi|15646081|ref|NP_208263.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori
           26695]
 gi|2314649|gb|AAD08512.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori
           26695]
          Length = 679

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 107/316 (33%), Gaps = 65/316 (20%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP  V  L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTKDQLNDVVLTPPYVATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAG 258
           +D   G+ G L  +MN + +        P                G E+  + H + V  
Sbjct: 388 WDFATGSAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILSDIHTLAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    +          ++ + F    F   + NPP+                 
Sbjct: 448 MILMGDGSSQILNQDGLSGFDGKVNNEAFKANAF---VLNPPYSASGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALEKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW--TSIR 435
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++     + R
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANR 586

Query: 436 NEGKKRRIINDDQRRQ 451
            + K    + D    +
Sbjct: 587 KKAKASHNLKDTHNAK 602


>gi|90962803|ref|YP_536718.1| Type II restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|90821997|gb|ABE00635.1| Type II restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|300215417|gb|ADJ79830.1| Type II restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 694

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 97/323 (30%), Gaps = 69/323 (21%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I L    +       I   L      E  +  +  +TPR V  L   L            
Sbjct: 348 IPLLESDLQLDFTGKILNSLNDWVSIENDKQNDVVLTPRYVTKLMVKLT----------R 397

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPH-------GQELEPET 251
             M   ++D   G+GGFL  AM+ +     +     K     + H       G EL    
Sbjct: 398 TDMNSYVWDTAMGSGGFLVSAMDEMFKDAKEKIQDKKKLEEKIEHIKKEQLLGVELLGNI 457

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
           + + V  M++         D +  ++ G +           +  L NPP+          
Sbjct: 458 YILAVLNMILMG-------DGASKMKNGDSHKIYDDLEFPANVFLLNPPYSAD------- 503

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                        G G   +++                    G  AI++  +        
Sbjct: 504 -------------GKGFNFVAEA-------------FSKMQKGYGAILIQENAGSGTGLP 537

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
                  + +L+ + + A + +P DLF   +++ T +++    +    +  V  I+ +  
Sbjct: 538 YT-----KKILDYNTLVASIHMPNDLFNGKSSVQTAIYVFKVNEPHNVKKAVTFIDFSKD 592

Query: 431 W--TSIRNEGKKRRIINDDQRRQ 451
                 R +  +   + D    +
Sbjct: 593 GYSRQNRKKSSQEVNLRDTDNAK 615


>gi|169823771|ref|YP_001691382.1| putative type I restriction-modification system methylation subunit
           [Finegoldia magna ATCC 29328]
 gi|167830576|dbj|BAG07492.1| putative type I restriction-modification system methylation subunit
           [Finegoldia magna ATCC 29328]
          Length = 570

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 91/242 (37%), Gaps = 31/242 (12%)

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +Q    + DL T + ++   S PP G  +      V  ++      +        +    
Sbjct: 187 RQEDYFNTDLSTLE-YNKVFSMPPMGMLYRDFDKRVNDKNLIELYKKNDFN----TKNEW 241

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
             ++ + +  +       +A  ++ S  LF  R    + +IR++L++N  IE+++ L   
Sbjct: 242 TDILKIISNTKFE-----KAIFIVHSGILFKER----DEKIRKYLIDNGYIESVIELAPR 292

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF    I+T + ++S         KV++++A++++       K    I  D    I D Y
Sbjct: 293 LFTGIGISTNILLISKNNK-----KVKMVDASEIYH----SDKMVNKITKDDVEVIFDAY 343

Query: 457 VSRENGKFSRMLDYRTFGYRRIK------VLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            +      S+ +    F                + +   +    + +++      K S L
Sbjct: 344 KN--ESTISKEVSPEEFEDNNYSFIPRRYTNEEIDLKNYVYLKDITKIKRGYANLKKSDL 401

Query: 511 HQ 512
           ++
Sbjct: 402 YK 403


>gi|291545710|emb|CBL18818.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 198

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 14/144 (9%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNI 158
           +  +I +  ++  + +  +     I +L    LL K+  +   I +L  +     V  ++
Sbjct: 65  VFPFIKNLHNDKNSAYSKY-MDDAIFKLPTPLLLSKVVDSLDEIYKLMNEIQTADVRGDV 123

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+L+ +           F TPR ++ +   ++           P     + DP+CGT G
Sbjct: 124 YEYLLSKIAQSGRN--GQFRTPRHIIRMMVEMM----------DPSSDEIICDPSCGTSG 171

Query: 219 FLTDAMNHVADCGSHHKIPPILVP 242
           FL  A  ++ +             
Sbjct: 172 FLVAAGEYLKEKRKEEIFYDKQKK 195


>gi|332974668|gb|EGK11585.1| type II restriction modification enzyme methyltransferase [Kingella
           kingae ATCC 23330]
          Length = 244

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 45/222 (20%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E + +    M++R   S      S   +      + LF+  +    L NPPF  + 
Sbjct: 2   ELNAEMYTLAATNMILRGDGSSRIEKGSAFNR-----PESLFSEFQADRLLLNPPFSYEE 56

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                                         M F+ +  +K++      G  AI++  S  
Sbjct: 57  NG----------------------------MPFIKYGLSKMQ----KDGLGAIIIQDSAG 84

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
                 S      + +L++  + A + +PTDLF     + T ++I       +    V+ 
Sbjct: 85  SGKAVMSN-----QEILKSHTLLASIKMPTDLFQPMAGVQTSIYIFKAGTPHDVEQPVKF 139

Query: 425 INATDLWTSIRNEGKKRRIINDDQR-RQILDIYVSRENGKFS 465
           I+ ++     R E   R + N +QR   I+ IY + +N K S
Sbjct: 140 IDFSNDGYK-RTERGLRELDNPEQRYADIVKIYKAGKNAKVS 180


>gi|300813794|ref|ZP_07094101.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300512084|gb|EFK39277.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 86

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          M E   +       IW  A  LWG     ++ KVI+    LR +  A E   + +  +  
Sbjct: 1  MAEKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISSAFERKYNELVAEGE 60

Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           F       E   +  G + +   E +L +L 
Sbjct: 61 GFE------EDRDEYLGENIFFVPENTLQSLA 86


>gi|325919125|ref|ZP_08181184.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
 gi|325550434|gb|EGD21229.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
          Length = 273

 Score = 73.3 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 44/232 (18%)

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G E +P   A+  + M++R    D + +L +       ++K      +
Sbjct: 9   QERNRIKSKGLIGIEQQPNMFALAASNMILRG---DGKANLYQGSCFDDAIAK-AVKKHK 64

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L NPPF +                                +  L  +   L     
Sbjct: 65  ADVGLLNPPFAQ----------------------------GTADLHELRFIQQMLYALEE 96

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           GG   AIV     +         + +R+ L+    +EA++++PT+LF+       + + +
Sbjct: 97  GGTGVAIVPMGCAI-------APNLLRQELMAEHTLEAVMSMPTELFYPVGAVCCIMVWT 149

Query: 412 NRKTEER-RGKVQL-INATDLWTSIRNEGKKRRIINDDQ--RRQILDIYVSR 459
             K   + +          D +   +++G+      +    R   +D+Y +R
Sbjct: 150 AHKPHAQSKRDTWFGYWKQDGFIKTKHKGRIDPE-GEWHLLRDHWIDMYRNR 200


>gi|315196848|gb|EFU27192.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 136

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           +TE      A L   +W  A DL G+   ++F   IL     R L    E   +      
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 57  ----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFS 108
               ++  A      DL++ +      F    +   + +    T++    +L + I    
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRKVE 122

Query: 109 DNAKAIFEDFDF 120
            +      + DF
Sbjct: 123 TSTLGEESENDF 134


>gi|325289835|ref|YP_004266016.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965236|gb|ADY56015.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 701

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 100/320 (31%), Gaps = 50/320 (15%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P+     ++  +Y  +  R     +     + TP  +V     L+      + +E P   
Sbjct: 186 PNERGKDLLGLVYMTISHRAARISN---GTYYTPGSIVE---KLVPKGLHLVEREFP--- 236

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHGQELEPETHAVCVAG 258
             + DP CG+G FL      +        +PP             G +++     +C   
Sbjct: 237 -RILDPCCGSGNFLLTVFLALKSNLVQKGLPPGEAEKLLLEECIFGFDIDSTAVWLCRVN 295

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +L+   ++D            + +        +F   + NPP+G  +  ++    ++   
Sbjct: 296 LLLL-CDTDFVPGNWHIQCDNALMGHSKKISGKFDLIIGNPPWGSDFSGNELTEYRKR-- 352

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                        +  S               N  G  A +L  S L           +R
Sbjct: 353 ----------YATARASFDSFSIFIEYALKTLNERGIVAYILPESIL----KVRTHLPVR 398

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ--------------L 424
           + LL+   IE+I  L  + F R        +    +  +   ++Q               
Sbjct: 399 KILLDETHIESIEKL-GNQFSRVFAPAISLLARKTEIHDSGHQIQIENIDEKRIISQKRF 457

Query: 425 INATDLWTSIRNEGKKRRII 444
            +   L+ +I +  ++ RI+
Sbjct: 458 ADHHLLFFNIWSSEREHRIL 477


>gi|297208852|ref|ZP_06925260.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886510|gb|EFH25435.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 153

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 64  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 123

Query: 59  YLAFGGSNIDLE 70
            + +  +  D E
Sbjct: 124 DITYQEAWADEE 135


>gi|226946192|ref|YP_002801265.1| DNA methylase [Azotobacter vinelandii DJ]
 gi|226721119|gb|ACO80290.1| DNA methylase [Azotobacter vinelandii DJ]
          Length = 212

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            ++D +EK        R      + +D  M  +MHL           GRAA+VL    LF
Sbjct: 1   MEEDGIEKNFLAKHQTR------ETADLFMALIMHLLRH------DTGRAAVVLPDGFLF 48

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
                  ++ ++R LLE   +  IV LP  +F   T+IAT +         +
Sbjct: 49  ---GEGVKTTLKRELLEEFNLHTIVRLPKGVFAPYTSIATNILFFEKGGPTQ 97


>gi|258452977|ref|ZP_05700970.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5948]
 gi|257859187|gb|EEV82042.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5948]
 gi|315198094|gb|EFU28426.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 136

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSFYNTSEYS---LSTLGSTNTRNNLESYIASFS 108
            + +  +  D E         +   GY       +S              +L + I    
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHLATAIRKVE 122

Query: 109 DNAKAIFEDFDF 120
            +      + DF
Sbjct: 123 TSTLGEESENDF 134


>gi|320143299|gb|EFW35083.1| hypothetical protein HMPREF9529_01245 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 135

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           +TE      A L   +W  A DL G+   ++F   IL     R L    E   +      
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 57  ----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFS 108
               ++  A      DL++ +      F    +   + +    T++    +L + I    
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRKVE 122

Query: 109 DNAKAIFEDFDF 120
            +      + DF
Sbjct: 123 TSTLGEESENDF 134


>gi|13357657|ref|NP_077931.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170761898|ref|YP_001752183.1| hypothetical protein UPA3_0103 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11357067|pir||G82933 type I restriction enzyme M protein, truncated homolog UU100
           [imported] - Ureaplasma urealyticum
 gi|6899055|gb|AAF30506.1|AE002110_4 type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827475|gb|ACA32737.1| conserved domain protein [Ureaplasma parvum serovar 3 str. ATCC
           27815]
          Length = 187

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 24/164 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
           +      +L   IWK A++L G     DF + +L     R +   L    +    K    
Sbjct: 4   KKEIERNNLHATIWKIADELRGAIDGWDFKQYVLGILFYRYISENLTKYINDNEHKIGDH 63

Query: 59  ---YLAFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
              Y      ++D E     +K  G+    +  ++ + + +     NL   + +      
Sbjct: 64  DFNYETCNDDDVDEEMKITLIKEKGFYIKPSFLFA-NIVKNAEKNENLNETLETVFNNIE 122

Query: 108 --------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                     N K +F D D +++           ++ +    I
Sbjct: 123 GSSSGYDSEKNLKGLFNDIDVNNSRLGSTTQERNKRLARILIRI 166


>gi|317014886|gb|ADU82322.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori Gambia94/24]
          Length = 678

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 109/316 (34%), Gaps = 65/316 (20%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP  V  L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAG 258
           +D   G+ G L  +MN + +        P                G E+ P+ H + V  
Sbjct: 388 WDFATGSAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    +          ++   F    F   + NPP+ ++              
Sbjct: 448 MILMGDGSSQILNQDSLSGFDGKVNDKEFKANAF---VLNPPYSERGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALEKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW--TSIR 435
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++     + R
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANR 586

Query: 436 NEGKKRRIINDDQRRQ 451
            + K    + D    +
Sbjct: 587 KKAKASHNLKDTHNAK 602


>gi|170717580|ref|YP_001784665.1| type I restriction-modification system methyltransferase
          subunit-like protein [Haemophilus somnus 2336]
 gi|168825709|gb|ACA31080.1| Type I restriction-modification system methyltransferase
          subunit-like protein [Haemophilus somnus 2336]
          Length = 122

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
          M       + L   IW+ A ++ G     DF + +L     R +    E       E
Sbjct: 1  MIISIQQRSELHRQIWQIANEVRGAVDGWDFKQYVLGTLFYRFISEKFEKYNDCAFE 57


>gi|282928609|ref|ZP_06336207.1| LOW QUALITY PROTEIN: type I site-specific deoxyribonuclease subunit
           LldI hsdM [Staphylococcus aureus A9765]
 gi|282591920|gb|EFB96956.1| LOW QUALITY PROTEIN: type I site-specific deoxyribonuclease subunit
           LldI hsdM [Staphylococcus aureus A9765]
 gi|320142953|gb|EFW34747.1| hypothetical protein HMPREF9529_01597 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 135

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
           +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59  YLAFGGSNIDLE-------SFVKVAGYSFYNTSEYS---LSTLGSTNTRNNLESYIASFS 108
            + +  +  D E         +   GY       +S              +L + I    
Sbjct: 63  DITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHLATAIRKVE 122

Query: 109 DNAKAIFEDFDF 120
            +      + DF
Sbjct: 123 TSTLGEESENDF 134


>gi|255525761|ref|ZP_05392692.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|255510584|gb|EET86893.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 128

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  ++ + +W  A +L G    +++   IL F   R L    E          +  G
Sbjct: 1   MSNNLQTITSKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEKYLVGNNVIDVEKG 60

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD------NAKAIFED 117
            S  D      V         + SLS   +    +  ES I   +D      + + IF++
Sbjct: 61  ESINDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIPSDYQTIFDN 120

Query: 118 FDFSSTIA 125
           F+ +S I 
Sbjct: 121 FNKNSGIK 128


>gi|150026174|ref|YP_001297000.1| modification methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|150026184|ref|YP_001297010.1| modification methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772715|emb|CAL44198.1| Probable modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772725|emb|CAL44208.1| Probable modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 754

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 134/386 (34%), Gaps = 57/386 (14%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP----- 147
           +      +   +A   +N    +   D  S I  ++ + L YK     + IE +      
Sbjct: 218 NNAILEAITRQLADKINNLSKGYSWKDRFSFIKNVDYSLLEYKKI--ITKIEKNIFKPFQ 275

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +     ++   Y+  ++R G   ++     +TP  +  L   L              +  
Sbjct: 276 NDEKQDILGKAYKIFLKRAGKIDNKNI--ILTPDHMKSLMVELA----------RLNVND 323

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPILVPHGQELEPETHAVCVAGMLIRR 263
            + D   GTGGFL +AM  +    +++    K        G E++    A+  + M +  
Sbjct: 324 VVLDTCTGTGGFLMEAMEVLIKKANNNETLIKNIKENQLIGFEVDSVLFALACSNMFLHG 383

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                  D   N+   S+L  D          ++N        KDKD +   +       
Sbjct: 384 -------DGRTNLLFRSSLLDDKNEN-----IINN--------KDKDLLNYINSLKPTKC 423

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 + ++     +      L+      G+  I++ +  L   + G     I   +L+
Sbjct: 424 IINPPYETNN----SIKFTLQALKYL-EQNGKLVIIMPTPTLTQNQNG-----ITADILK 473

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLIN-ATDLWTSIRNEGKKR 441
              ++ ++ +P +LF          +    K    +  +V   N   D + SI+++G+  
Sbjct: 474 IAKLDFVIKMPYNLFAEQKRTVNTSVFGFTKTPHNQNDEVLFYNLEEDGFVSIQHKGRVD 533

Query: 442 RIINDDQRR-QILD-IYVSRENGKFS 465
           +    +  R  I+D I+ S+E    S
Sbjct: 534 KFNKWEDIRSNIVDSIFNSKEAKGIS 559


>gi|15612430|ref|NP_224083.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155977|gb|AAD06940.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 678

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 107/316 (33%), Gaps = 65/316 (20%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP  V  L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAG 258
           +D   G+ G L  +MN + +        P                G E+ P+ H + V  
Sbjct: 388 WDFATGSAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    +          ++   F    F   + NPP+                 
Sbjct: 448 MILMGDGSSQILNQDSLSGFDGKVNDKEFKANAF---VLNPPYSAPGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALEKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW--TSIR 435
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++     + R
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANR 586

Query: 436 NEGKKRRIINDDQRRQ 451
            + K    + D    +
Sbjct: 587 KKAKASHNLKDTHNAK 602


>gi|332686989|ref|YP_004456763.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
 gi|332370998|dbj|BAK21954.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
          Length = 208

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 19/191 (9%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFG 63
           +      +W       G    T +   I      + L       LE        + +   
Sbjct: 4   SNEQKTKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLEGVLRGETWEQVYAQ 63

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-----------NAK 112
            S   LE   K  GY       +          R N+     +F             + +
Sbjct: 64  DSARALEYMKKNLGYGIQPNDFFVDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFE 123

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            IF+   F S    +    +A ++  + +  S  E       D V S+IYE+L+ +F   
Sbjct: 124 GIFDGMRFDSADLGVNAQARAKVMISMIELLSSPEFDFSNGKDTV-SDIYEYLLAQFAMV 182

Query: 170 VSEGAEDFMTP 180
           ++     + TP
Sbjct: 183 LASDMGKYYTP 193


>gi|323440114|gb|EGA97829.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 125

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           +TE      A L   +W  A DL G+   ++F   IL     R L    E   +      
Sbjct: 3   ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 57  ----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
               ++  A      DL++ +      F    +   + +    T++    ++A+
Sbjct: 63  DITYQEAWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLAT 116


>gi|224456727|ref|ZP_03665200.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874474|ref|ZP_05247184.1| type I restriction system endonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254840473|gb|EET18909.1| type I restriction system endonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158819|gb|ADA78210.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 388

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 64/219 (29%), Gaps = 37/219 (16%)

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  +        G +  P    V    M++           +        L+ +  
Sbjct: 41  EKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------DGHNGIHHNDGLLNVNGI 94

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-------------------------GELG 322
              RF   L+NPPFG    KD   V +E K                             G
Sbjct: 95  FRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFG 154

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +    L K  + S+   +    +       GGR  IVL    L      S   + R +  
Sbjct: 155 KPIRSLYKTGEISVATEVLFVERCLDLLKAGGRMGIVLPEGVL----NSSNLQKAREYFE 210

Query: 383 ENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERR 419
               I  IV+LP DLF  +   + T L  L     EE+ 
Sbjct: 211 SRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQE 249


>gi|322383486|ref|ZP_08057262.1| type I restriction-modification system DNA methylase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152225|gb|EFX45055.1| type I restriction-modification system DNA methylase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 388

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 74/247 (29%), Gaps = 51/247 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 F TP  V      ++ +  +            + +P+ G+G FL          
Sbjct: 33  GFNGGAFFTPTHVARFMVGVIRNLYEGF-----PENMRVLEPSVGSGVFL---------- 77

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                +PP       E++  +  V             P  D+           +D     
Sbjct: 78  ---EHLPPDAEITALEIDETSARVTQL--------IYPHADVILGNAL-DHDRRDY---- 121

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+G+  E +K+ +    K G                  F+           
Sbjct: 122 -YDLVIGNPPYGETVETEKEYLTLSKKKGIY---------RGKSEAAFIELAIR----AA 167

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
             GG  A +L +   F G A     ++R+ + E     A + LP + F    T I T + 
Sbjct: 168 RPGGYIAFILPTGISFAGHA----KKVRKLMYETCWQVATIMLPGETFMHTGTTIPTQII 223

Query: 409 ILSNRKT 415
           IL     
Sbjct: 224 ILRKAPP 230


>gi|124005662|ref|ZP_01690501.1| type I restriction-modification system, M subunit, putative
           [Microscilla marina ATCC 23134]
 gi|123988730|gb|EAY28336.1| type I restriction-modification system, M subunit, putative
           [Microscilla marina ATCC 23134]
          Length = 1014

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 111/705 (15%), Positives = 202/705 (28%), Gaps = 109/705 (15%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLSTL 91
            ++L    +  LE   + T +A  +KY     S    +    V G Y  Y   E + +  
Sbjct: 188 DLLLRSLFILYLEDR-KATDAAFYQKYTGAQNSQTYFDVLNDVKGTYKLYAKLEDAFNGN 246

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S  T    +          +  F          R E         K F       D +P
Sbjct: 247 LSPITAEETKIVTIQHLQEIRKCF-------WSERREDGQ-----LKLFDWRIFSFDVIP 294

Query: 152 DRVMSNIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             ++SNIYE  + +   E S+     F TP  +       +L       K+         
Sbjct: 295 VLLLSNIYEDFLEKEEGEASKTKKGAFYTPPALAEFILNEVLPY---PTKDDTNYQVKTL 351

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGM 259
           DPTCG+G FL + +N + D          L              G E+E E   V    +
Sbjct: 352 DPTCGSGIFLVETLNRLLDRWQVAHPNQSLSFEVICQIVQDNIFGIEIEKEAIKVAAFSL 411

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKD--------------------LFTGKRFHYCLSNP 299
            +  L+    + L +  +    +                        F    F   + NP
Sbjct: 412 YLAMLDRLEPKTLWQTARFPYLIYDPDNDADKQGANLFRMSSLSTGAFENIDFDLVVGNP 471

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF +    ++           L ++      +     L  +H A  L       G+ A+V
Sbjct: 472 PFSRGGLSNE-------IKTYLKKYDFASEMV-----LAFLHRATTL----CPHGKIALV 515

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-----------PTDLFFRTNIATYLW 408
            ++ P+            R++L +   +E +                +LF        + 
Sbjct: 516 CAAKPILFNHL-KPYQNFRQFLFQETYVEKVYNFSVLRNVSKKQGGRNLFASATSPVSVV 574

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM- 467
             S  K  +   K  +  A    T+I+N       I+    + +      + N    ++ 
Sbjct: 575 FYSKNKPVKMPEK-LMYCAPK--TAIKNRMIDGIAIDSTDIKYLPREECQKPNTNIWKVA 631

Query: 468 -LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                       ++     +     K G       +       +      + L    +QI
Sbjct: 632 MWGSEQDFDLIQRLQSKQNLEDFFVKNGWNDRGDGLKTSNPKNIPNQLIKNDLHLPAKQI 691

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK-------DPRADPVTDVNG 579
             Y   ++F          +  K+ A ++  +        K       D  +   + + G
Sbjct: 692 RRYFTPKTFAVNIEDVKFHRLGKISAYQAPHIVIKKGLTNKEYCVSYVDYNSSFKSTIYG 751

Query: 580 EWIPDTNLTEYENVPYLESIQDYF-----------VREVSPHVPDAYIDKIFIDEKDKEI 628
               D+   +        S   YF             EV P       D  F   K+   
Sbjct: 752 IHHKDSGKLKILTAYLNSSFAKYFMFLTTASWGIEREEVKPDEAFQLPDLCFSLPKNTSK 811

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAE--LKGVEAQIATLLEEM 671
             +       + F Q    +K   I+ E  +  +E +I  L  ++
Sbjct: 812 AIL-------KAFDQIVEVKKANVINEEPQINALEKEIDELFWKV 849


>gi|301598299|ref|ZP_07243307.1| putative restriction-modification protein [Acinetobacter baumannii
           AB059]
          Length = 212

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T  +L     + ++ K    ++L   ++   +  + +E+ +++  +  +    ++ TPR 
Sbjct: 94  TNLQLTNPVAVKEMIKELDKLKLS--SIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRH 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHKI 236
           +      L+          +P     +YDP CGTGGFLT+A +H+ D        S    
Sbjct: 151 ITKTIVNLV----------NPKYGEKIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIK 200

Query: 237 PPILVPHGQEL 247
                  G+E+
Sbjct: 201 LKHNTIFGREI 211


>gi|300858886|ref|YP_003783869.1| hypothetical protein cpfrc_01469 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686340|gb|ADK29262.1| hypothetical protein cpfrc_01469 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206586|gb|ADL10928.1| Hypothetical protein CpC231_1461 [Corynebacterium
           pseudotuberculosis C231]
 gi|308276829|gb|ADO26728.1| Hypothetical protein CpI19_1468 [Corynebacterium pseudotuberculosis
           I19]
          Length = 72

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M   YE+L++RF  +  +   +F TPR VVHL T LL           P    T+YDPTC
Sbjct: 1   MGAAYEYLLKRFVDDAGQKVGEFFTPRSVVHLITRLL----------KPQENETVYDPTC 50

Query: 215 GTGGFLTDAMNHVADCGSHHKI 236
            TGG L + +  V   G   + 
Sbjct: 51  STGGMLFEPVAAVDANGGDTRT 72


>gi|332829740|gb|EGK02386.1| hypothetical protein HMPREF9455_01656 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 885

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 130/426 (30%), Gaps = 41/426 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E   + +    FI+    +L G   + +           R    A E +R     + +  
Sbjct: 155 ELINTISRYKRFIYS---ELNGRISNEEISNFFNAIIFTR----AFEDSREIDGSEQVLL 207

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFS 121
                +   F  +   SF       + +        +L S I     N    IF DF  S
Sbjct: 208 KSLWSEKIQFSDILSLSF---DNLDIKSYPDQIINKDLFSNINKLDKNTLNNIFTDFYKS 264

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG----SEVSEGAEDF 177
           +         ++ K     S I     ++ +   + I ++ +         EV++ +  +
Sbjct: 265 NRTPYKYDFSIISK--HALSRIYEKYVSILNIKETEIVQYNLFNNTPNPYEEVNKSSGSY 322

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +    +  +    + +          + +P  G+G FL   + ++ D  S  K  
Sbjct: 323 YTPQFIARFFSRYI----EKVNPNILNGDLKILEPAVGSGIFLRTLVENITDKRSIQKAF 378

Query: 238 PILVPHGQELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHYC 295
             L   G +            + L+  + +      + NI    +          +    
Sbjct: 379 SNLT--GIDKNSTACDAAKLSLTLLHLVITGELPKENLNIINQDSINYFTNNKNFKCDVV 436

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SNPPF                N +  +    L + S       +          N GG 
Sbjct: 437 ISNPPFISYGLMS---------NEDRNKVKSFLAEYSYNKYDLYLSFVKIGIDSLNEGGI 487

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSN 412
              VL ++ L    A      IR+ L     I  +V L +    +F    +   L I   
Sbjct: 488 GLFVLPNTFLVTDSA----KLIRKHLANECNILCLVDLSSVDYKIFEDAGVYPILLIFQK 543

Query: 413 RKTEER 418
           +K  E+
Sbjct: 544 KKKREK 549


>gi|317010154|gb|ADU80734.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori India7]
          Length = 678

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 109/316 (34%), Gaps = 65/316 (20%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP     L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYAATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGS---------HHKIPPILVPH--GQELEPETHAVCVAG 258
           +D   G+ G L  +MN + +              KI  I      G E+ P+ H + V  
Sbjct: 388 WDFATGSAGLLVASMNLMIEDAKKCITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    +          ++ + F    F   + NPP+                 
Sbjct: 448 MILMGDGSSQILNQDSLSGFDGKVNDEAFKANAF---VLNPPYSASGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALAKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW--TSIR 435
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++     + R
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANR 586

Query: 436 NEGKKRRIINDDQRRQ 451
            + K    + D    +
Sbjct: 587 KKAKASHNLKDTHNAK 602


>gi|185178790|ref|ZP_02964586.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024347|ref|ZP_02997019.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518700|ref|ZP_02557181.2| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|184209410|gb|EDU06453.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188018611|gb|EDU56651.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997714|gb|EDU66811.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
          Length = 179

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 22/163 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------ 56
           +      +L + IWK AE+L G     DF + +L     R +        +         
Sbjct: 4   KKEIERNNLHSTIWKIAEELRGAIDGWDFKQYVLGILFYRYISENFTKYINDGERESGDP 63

Query: 57  ----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
               E       +  +    +K  G+    +  ++     + N  N  E+    F     
Sbjct: 64  NFNFETLNDNVVNEENRTDLIKEKGFYIKPSFLFTNVVKNAENDENLNETLETIFKSIEE 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                    N K +F D D ++            ++ +    I
Sbjct: 124 SSIGYDSEKNLKGLFNDIDVNNNRLGSTTQERNKRLARILIRI 166


>gi|315124538|ref|YP_004066542.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018260|gb|ADT66353.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 960

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 143/460 (31%), Gaps = 35/460 (7%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
               + +    F TP  +       L   +             + D  CG G FL    N
Sbjct: 1   MQKGMKQDEGQFFTPIQICEFIMYSLPLHE---MLSKNSKALRVIDYACGAGHFLNTYAN 57

Query: 226 HVADCGSHHKIPPILV-PHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTL 282
            +    +  ++       +G E E     V    + M  +   +    D   + +  +T 
Sbjct: 58  ELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTN 117

Query: 283 S------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +      K       F   ++NPP+  K          +        F   +   ++ S+
Sbjct: 118 NLEGEKAKPQIESNSFDLLIANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSI 174

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                   +     N   +AAI+L SS L      S     R  L +N    AIV L   
Sbjct: 175 ECF--FCERANQILNDNAKAAIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQ 229

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK------RRIIND--DQ 448
            F  T   T +  L  ++T ++   +   + + +   I  E  K      +  ++   D 
Sbjct: 230 TFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENFYQNYLSAYCDF 289

Query: 449 RRQILDIYVSRENGKF-SRMLDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADI 502
           R+   ++Y +  NG   S++ +   F      +R+    + L+ S I  ++   +   D 
Sbjct: 290 RKFDKELYSNFLNGNLDSKLAELEAFKDYCNAFRQTSDYKRLKESKIYKESKDKQDLEDK 349

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
            +   +   +   L      + Q      + S +KE  K    +    K  +        
Sbjct: 350 AFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEP 409

Query: 563 AFGRKDPRADPVTDVNGE-WIPDTNLTEYENVPYLESIQD 601
                  R +P  +      I  + L   + +P    I  
Sbjct: 410 YLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYA 449


>gi|307327890|ref|ZP_07607072.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
 gi|306886408|gb|EFN17412.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
          Length = 1155

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 106/329 (32%), Gaps = 65/329 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL---LLDPDDALFKESPGMIRTLYDPT 213
           ++YE+ ++ +  E+ + +  + TP  +      L   +L       +       T+ DP 
Sbjct: 322 HLYENFLQEYDRELRKRSGTYYTPPRLAREMVRLTDAVLRTRLGCVEGFADEQVTIVDPA 381

Query: 214 CGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVA-------- 257
            GTG FL++ ++ VA+  S                   G E +   +AV           
Sbjct: 382 MGTGTFLSEIIDRVAEERSRRGEGFRGEAVEQLAGRLIGFERQMAAYAVAQMRITQTLRE 441

Query: 258 --------GMLIR--RLESDPRRDLSKNIQQGS-------TLSKDL-FTGKRFHYCLSNP 299
                    + +      +DP    +              T   D     ++    +SNP
Sbjct: 442 QVTDTQLGDLRLHLADTLADPYERATLFTFLPDGDPLVENTRKADWIKREQKVTVMISNP 501

Query: 300 PFGKKWEKDKDAVEKEHKNGEL----------GRFGPGLPKISD---GSMLFLMHLANKL 346
           P  ++ E +   VEK H+  +           GR G    K+ +       +      + 
Sbjct: 502 PDRERAEGEGGWVEKGHEGDDRAPLLDDFRLGGRNGVHENKLKNLYVYFWRWATFKVFEQ 561

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-IVAL-PTD-------- 396
               +  G  A + ++  L    +G G   +R++L E    E  I+ L P          
Sbjct: 562 HRSESDRGIVAFISTAGFL----SGPGFRGMRKYLRETCS-EGWIIDLSPEGIQPPMRTR 616

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLI 425
           LF        + +    + +     ++ +
Sbjct: 617 LFEGVQQPLAIAVFVRSRADTELAHIRYV 645


>gi|167769855|ref|ZP_02441908.1| hypothetical protein ANACOL_01189 [Anaerotruncus colihominis DSM
           17241]
 gi|167668216|gb|EDS12346.1| hypothetical protein ANACOL_01189 [Anaerotruncus colihominis DSM
           17241]
          Length = 604

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 89/310 (28%), Gaps = 65/310 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMIRT-- 208
            ++   +E ++R       +    + T  ++V      +         +K+S        
Sbjct: 268 DIIGAFFEEILR---VGFKQDKGMYFTHSNIVRFMVEAIGLESLTQDTWKKSTHPENRLP 324

Query: 209 -LYDPTCGTGGFLTDAMNHVADCGSHHKI-----------------------PPILVPHG 244
            + DP CG+G FL  AM  +       K+                             +G
Sbjct: 325 YVIDPACGSGTFLLHAMQTITRAIKSKKLDLVNDFESIQFYDARMSDAVPNYWAENFVYG 384

Query: 245 QELEPETHAVCVAGMLIRR-----------------LESDPRRDLSKNIQQGSTLSKDLF 287
            + +          M++                         R   + I+  ++ +    
Sbjct: 385 FDPQFIMAITAKVNMVLHGDGSAHIFKYDAFKPLTSYSDPKLRPAGERIRTIASKAYPHN 444

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F   LSNPPFG         +  E        F     + S+G          +  
Sbjct: 445 VCETFDVVLSNPPFGV-------TLSPEVTRDIKNTFSLSSSQPSEG------LFVERYF 491

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GGR  +VL  S             +R  L     I+A+VALP ++F  T   T L
Sbjct: 492 QLLKPGGRLGLVLPESIFNAVDLLP----VRILLYRFFKIKALVALPRNVFIDTPTLTSL 547

Query: 408 WILSNRKTEE 417
                +   E
Sbjct: 548 LFAQKKNKSE 557


>gi|297209069|ref|ZP_06925468.1| type I restriction-modification system [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|296886002|gb|EFH24936.1| type I restriction-modification system [Staphylococcus aureus
          subsp. aureus ATCC 51811]
          Length = 92

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 1  MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
          +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGE 62

Query: 59 YLAFGGSNIDLE 70
           + +  +  D E
Sbjct: 63 DITYQEAWADEE 74


>gi|91216828|ref|ZP_01253792.1| type II restriction-modification enzyme [Psychroflexus torquis ATCC
           700755]
 gi|91184989|gb|EAS71368.1| type II restriction-modification enzyme [Psychroflexus torquis ATCC
           700755]
          Length = 1020

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 136/449 (30%), Gaps = 70/449 (15%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           ++ RL            + Y+    +++  E F +            +    G T    N
Sbjct: 298 VIYRLSDL----HKRGMKDYMELDVADVSEEDFDR-------ELLRIASQIDGETQEIKN 346

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +   +  + +N  A  E  +  +     E    + K+ + F            + + + +
Sbjct: 347 MFKQLRLYKNNEFAFKEVINERTFYENAEIVKEVVKLLETFK----IKYEHKQKFLGDFF 402

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD---DALFKESPGMIRTLYDPTCGT 216
           E L+      + + +  F TP  +       +       + +  +    +  + D  CG+
Sbjct: 403 ERLL---NIGIKQESGQFFTPTPITTFICNSIPFEKVIENKINLKDNNFLPYVIDYACGS 459

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV--------------------PHGQELEPETHAVCV 256
           G FL DAM+ +       K                           +G E +        
Sbjct: 460 GHFLNDAMDRIDKILQSIKNEEFRTNTQRDNFYAWKRAYKWAKEFVYGIEKDYRLAKTTK 519

Query: 257 AGMLIRR------LESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDK 309
               +        L  D     +  +  G   ++        F   ++NPPF  +  +  
Sbjct: 520 VACFLNGDGEAKILYGDGLAPFNSKLYYGKLNNETGDKQNPVFDAIVANPPFSVESFRMV 579

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                E+  G    +     K  D   LF+   +  L+      G A I+L S+ L N  
Sbjct: 580 L----ENGKGTFDLYDQITDKSDDIECLFIERTSQLLK----ENGFAGIILPSTILLNR- 630

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINAT 428
                 + R+ LLEN  I  +    T  F      T    +  R K E  +  V L +  
Sbjct: 631 --GIHQKARKLLLENFKICGLCEFGTKAFTYAGQPTIALFIKKREKVEIDKINVLLSD-- 686

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYV 457
                     KK    + D  + I+  Y+
Sbjct: 687 --------FKKKETDFSFDGIKNIISQYI 707


>gi|302380041|ref|ZP_07268520.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312267|gb|EFK94269.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 154

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 108 SDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLI 163
            D+ K +FED D +S+       EK   L  I      I     +        + YE+L 
Sbjct: 22  EDDIKGLFEDVDTTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYLT 81

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             + S   +   +F T + V  L   L++D   ++ K        +YDPTCG    + 
Sbjct: 82  SNYASNAGKSGGEFFTLQTVSKLLAKLVMDGKTSINK--------VYDPTCGERVIIV 131


>gi|296277403|ref|ZP_06859910.1| type I restriction-modification system, M subunit [Staphylococcus
          aureus subsp. aureus MR1]
          Length = 110

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 1  MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREK 58
          +TE      A L   +W  A DL G+   ++F   IL     R L    E     A+  +
Sbjct: 3  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGE 62

Query: 59 YLAFGGSNIDLE-------SFVKVAGYSFYNTSEYS 87
           + +  +  D E         +   GY       +S
Sbjct: 63 DITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFS 98


>gi|316985076|gb|EFV64029.1| type I restriction enzyme, modification chain [Neisseria
           meningitidis H44/76]
          Length = 173

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 94  TNTRNNLESYIASFSD--NAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPD 148
            +  + L   IA  ++  + K + +  DF+         E    L ++   F  + L  +
Sbjct: 20  ADIGDRLNKIIAQIAEANDLKGVIDVTDFNDEDKLGKGKEMIDRLSRLVGIFKKLNLSSN 79

Query: 149 TV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
               D ++ + YE+L+R F +E  +    F TP +V  +   ++    D 
Sbjct: 80  QAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISADC 129


>gi|58616448|ref|YP_195577.1| Type I restriction enzyme (modification subunit) [Azoarcus sp.
           EbN1]
 gi|56315910|emb|CAI10553.1| Type I restriction enzyme (modification subunit) [Aromatoleum
           aromaticum EbN1]
          Length = 594

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 119/359 (33%), Gaps = 60/359 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            + E LI         G   F  P ++V L   L                  +Y P    
Sbjct: 104 FVDEVLIALGSGAGRSGIGMFTMPHELVQLLIGLA----------DIRPGEEVYTPFDDA 153

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKN 275
                 A    A   +                P  + +    +L ++ +  +  RD   +
Sbjct: 154 LQLSLAAAQAGASVFTEMPR----------YSPLPYLI---NLLTKQQIHVNAGRDPITH 200

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                    D    + F   +S PP G +       +E   ++   GRF     + +  S
Sbjct: 201 P-----SFVDGPRLRSFAKTVSFPPMGVR-----LPLETSDRDL-YGRFR---ERTTSSS 246

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +L   H+  + +       RA I+  +S LF   A   E  +R+ L+ +  +EA++ LP 
Sbjct: 247 VLAARHVLAQTQR------RAVILAPNSLLFGAGA---ERSLRQDLV-HGGLEAVIGLPP 296

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
              F T I+  + +++  +      +V  ++ +      + +GK R  +     R++L  
Sbjct: 297 ATLFGTAISLAVMVINLEQAATHV-EVLFVDGSADRFH-KRDGKGRTTLTG--WRELLQA 352

Query: 456 YVSRENGKFSRMLDYRTFGYRRIK--VLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
              R  G     +  +       +  V R  R         +  ++  +   ++ PL +
Sbjct: 353 VNQRRTGDHVTAVPSQVIEENDYQLMVSRYARSPM------IDAVDEALRRSEVVPLEE 405


>gi|317013241|gb|ADU83849.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori
           Lithuania75]
          Length = 678

 Score = 70.6 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 108/316 (34%), Gaps = 65/316 (20%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP  V  L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTQDQLNDVVLTPPYVATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGS---------HHKIPPILVPH--GQELEPETHAVCVAG 258
           +D   G+ G L  +MN + +              KI  I      G E   + + + V  
Sbjct: 388 WDFATGSAGLLVASMNLMIEDAKKCITSLEELEQKIVHIKAKQLLGIEKLQKIYILAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    +          ++ + F    F   + NPP+                 
Sbjct: 448 MILMGDGSSQILNQDSLSGFDGKVNDEEFKANAF---VLNPPYSASGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALAKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW--TSIR 435
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++     + R
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANR 586

Query: 436 NEGKKRRIINDDQRRQ 451
            + K    + D    +
Sbjct: 587 KKAKASHNLKDTHNAK 602


>gi|294786304|ref|ZP_06751558.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|294485137|gb|EFG32771.1| conserved hypothetical protein [Parascardovia denticolens F0305]
          Length = 562

 Score = 70.6 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 39/257 (15%)

Query: 190 LLLDPDDALFKESPGMIRTLY-DPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----PH 243
           ++     +     P +   +  DP CGTGGFL ++   +    S  +   I        +
Sbjct: 30  MVTGFSYSSCTSCPCIKDKVLLDPACGTGGFLFESYRTLLSNASDEQRDEIRTWAHHNLY 89

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-------GKRFHYCL 296
           G +L+P    +  A M+  + +      L  ++++       +F           +   L
Sbjct: 90  GVDLDPINVKLSRALMIGAK-DGSTNIVLGDSLREQKWGEFPMFPPVIGSEADGSYDVVL 148

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-----SMLFLMHLANKLELPPN 351
           +NPPFG+K +          +  +  R    + K ++G                +E    
Sbjct: 149 TNPPFGEKLKI---------RTTDAKRAKYTICKHTNGGANSEQYADTELGLVFMERAYR 199

Query: 352 ---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYL 407
               GGR  IVL  +  F+          R+W+ ++  +  ++ +P + F       T  
Sbjct: 200 LLAEGGRLGIVLPETYFFSTS----YRWFRQWVDQHFDVIGVMNVPMEAFQGFCRAKTNF 255

Query: 408 WILSNRKTEERRGKVQL 424
           ++++ + T   +GKV L
Sbjct: 256 YVMTKKTT---KGKVIL 269


>gi|225551105|ref|ZP_03772051.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225378920|gb|EEH01285.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
          Length = 179

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 22/163 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------ 56
           +      +L + IWK AE+L G     DF + +L     R +        +         
Sbjct: 4   KKEIERNNLHSTIWKIAEELRGAIDGWDFKQYVLGILFYRYISENFTKYINDGERESGDP 63

Query: 57  ----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----- 107
               E       +  +    +K  G+    +  ++     + N  N  E+    F     
Sbjct: 64  NFNFETLNDNVVNEENRTDLIKEKGFYIKPSFLFTNVVKNAENDENLNETLETIFKSIEE 123

Query: 108 -------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                    N K +F + D ++            ++ +    I
Sbjct: 124 SSIGYDSEKNLKGLFNNIDVNNNRLGSTTQERNKRLARILIRI 166


>gi|332982562|ref|YP_004464003.1| hypothetical protein Mahau_2005 [Mahella australiensis 50-1 BON]
 gi|332700240|gb|AEE97181.1| hypothetical protein Mahau_2005 [Mahella australiensis 50-1 BON]
          Length = 858

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 112/333 (33%), Gaps = 51/333 (15%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-SEGAEDFMTPRDVVHLATALLLDPD 195
            +  + I  H  +  D +  +I   + R   +   S+    F T   +V       L P 
Sbjct: 80  VQKLAHILSHAISEDDWLKDDIIAWIYRHCANSADSKSKTRFYTYDWIVKYIVDNTLTPY 139

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQE 246
                +S   I  L DP+CG G FL  A +   D        P+            +G +
Sbjct: 140 WRKIGKSVESI-KLLDPSCGGGSFLLYAFDRFYDMYVEEGCVPVGDIPRSILNKNIYGVD 198

Query: 247 LEPETHAVCVAGMLIR------RLESDPRRDLSKNIQQGS---TLSKDLFTGKRFHYCLS 297
           ++P    +    + ++       ++   +  +  +   GS       D   G+ +   + 
Sbjct: 199 IDPRAVRIARLNLYMKAKSMNADVDVPTKNIICSDHDMGSLVRHGIHDKVGGQLYDVVVG 258

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+               K  +  R           + L+   +   LEL     G   
Sbjct: 259 NPPY-----------LNNRKMTDNLRGNIAQWYSHSKTDLYAAFIERGLELLVP-EGYLG 306

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL---------- 407
            +   + L+  R       +R  LL+   I+ IV L  D+F   N++  +          
Sbjct: 307 YITPDTYLYIKR----FETLRSVLLDKLYIDKIVHLGNDVFANANVSVAVLIARNDAKNR 362

Query: 408 ---WILSNRKTEERRGKVQLINATDLWTSIRNE 437
              W    R+ ++++G +  I+  D +  IR +
Sbjct: 363 GVSWFYDLRRVKDKKGALYRID--DRYVYIREQ 393


>gi|17230181|ref|NP_486729.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
 gi|17131782|dbj|BAB74388.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
          Length = 145

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 55/163 (33%), Gaps = 30/163 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+ ++L G    + +   +L    ++ +          + E  +  GG  
Sbjct: 4   KKSELYSSLWKSCDELRGGMDASQYKDYVLVLLFVKYVSDKYAGVADVLIE--VPEGGGF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTI 124
            D+ +                    G  +  + +   I + ++  + K + +  DF++  
Sbjct: 62  QDIVALK------------------GQKDIGDGINKIITNLAEANDLKGVIDVADFNNA- 102

Query: 125 ARLEKAGLLYKICKNFSGI------ELHPDTVP-DRVMSNIYE 160
            +L K   +     N   I          +    D ++ + YE
Sbjct: 103 DKLGKGKEMQDRLSNLVAIFETPALNFSKNRADGDDILGDAYE 145


>gi|170025880|ref|YP_001722385.1| type I restriction-modification system, M subunit [Yersinia
          pseudotuberculosis YPIII]
 gi|169752414|gb|ACA69932.1| type I restriction-modification system, M subunit [Yersinia
          pseudotuberculosis YPIII]
          Length = 100

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
          +   LA  IW++A  +    +  ++   IL F   + L          +    E   A  
Sbjct: 2  NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61

Query: 64 GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
            + D   +V+     F        + + ST  
Sbjct: 62 EEDADTVKYVQDNLGYFIAYDNLFSTWVDSTAA 94


>gi|284053228|ref|ZP_06383438.1| type I restriction enzyme M protein [Arthrospira platensis str.
           Paraca]
          Length = 122

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +  G++      ++K A+ L G+ + +D+  V L    L+ +    E  +  + E+Y   
Sbjct: 33  KNNGASLGYEAELFKAADKLRGNMEPSDYKHVALGLIFLKHICDRFETRQRELAEEYPEG 92

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              + +       A   F+       S   +   +
Sbjct: 93  VEDSDEY-----TAENVFWVPQAARWSHPQANAKQ 122


>gi|325996727|gb|ADZ52132.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori 2018]
 gi|325998321|gb|ADZ50529.1| putative type II restrcition enzyme/ methyltransferase
           [Helicobacter pylori 2017]
          Length = 599

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 63/293 (21%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP     L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYAATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAG 258
           +D   G+ G L  +MN + +        P                G E+ P+ H + V  
Sbjct: 388 WDFATGSAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    + +        ++   F    F   + NPP+                 
Sbjct: 448 MILMGDGSSQILNQNSLSGFDGKVNDKEFKANAF---VLNPPYSASGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALAKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++L
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNL 579


>gi|296125965|ref|YP_003633217.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
 gi|296017781|gb|ADG71018.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
          Length = 676

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 56/287 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   +E+LI +   +       + TPR V+ +   +L          +P    ++ D 
Sbjct: 330 EVIDEAFEYLINK---DSKGEKGQYFTPRHVIDMCVKML----------NPHKNESMIDT 376

Query: 213 TCGTGGFLTDAM-NHVADCGSHHKIPPILVPH-----GQELEPETHAVCV-AGMLIRRLE 265
             G+ GF      N +       +       +     G + +     V     ++    E
Sbjct: 377 AAGSCGFPVHTWFNMIGHLFDGQEPNDDEKEYVENIFGLDFDERAVRVARTLNLIAGDGE 436

Query: 266 SDPRR------DLSKNIQQGSTLSKDLFTG-----------KRFHYC--LSNPPFGKKWE 306
           ++         D  +  ++  +  ++ F             K F +C  L+NPPF  + +
Sbjct: 437 TNVLHINTLDYDKKRWDEKRDSDYREAFNNLIKHSVNKEDYKLFDFCLLLANPPFAGEIK 496

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           + +   + E            + K    S+   +    +       GGR A+VL      
Sbjct: 497 EHRILAKYE------------IAKKGKKSIGRDILFIERNLDFVRDGGRLALVLPQGRF- 543

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
                + +  IR ++ E   I A+V L  + F   T   T +  L  
Sbjct: 544 ---NNATDEYIRDFISEKARILAVVGLHGNTFKPHTGTKTSVIFLQK 587


>gi|294783683|ref|ZP_06749007.1| hypothetical protein HMPREF0400_01677 [Fusobacterium sp. 1_1_41FAA]
 gi|294480561|gb|EFG28338.1| hypothetical protein HMPREF0400_01677 [Fusobacterium sp. 1_1_41FAA]
          Length = 627

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 105/283 (37%), Gaps = 24/283 (8%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++    L  P    ++ K+ +   +     +   F   + + +    LF +   N L+  
Sbjct: 233 EKLDKILLAPSLTFEYSKNDEEKYRNMIQNDFN-FQNEILEKTSLEWLFNLLTINHLK-- 289

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRA  V+  + L N +       +R++ +EN  IE+I+ LP ++   ++++  L +
Sbjct: 290 --DDGRALSVVKINTLSNPKN----KNVRKYFIENGYIESIILLPENILIGSSVSLALIV 343

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNE-----GKKRRIINDDQRRQILDIYVSRENGKF 464
            S         K++ ++A++ +T  R +        ++I+ ++  R I     S +N + 
Sbjct: 344 FSKGNK-----KIRFVDASNFYTKERRKKGDRLNPTKKILEENNIRDIFKFLNSDDNSEI 398

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-----L 519
           S       F      +     +  I +     +++  I  + +  + +   + +     L
Sbjct: 399 SISKGIEEFSENDYNLDVIENIEVIPEFENSKKIKELIDKKIIKDIIRGSQISLDELKDL 458

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           +   +  Y Y    +     I+    +    K  +      I 
Sbjct: 459 RSHEETPYIYLTLSNINDGFIEYENIEDYLKKIPEKQEKFCIK 501


>gi|298531139|ref|ZP_07018540.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509162|gb|EFI33067.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 489

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 136/449 (30%), Gaps = 62/449 (13%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +  R   REK       N  +  F    G S  +   ++L  L     +           
Sbjct: 59  QEKRREPREKESTAKLINKYMADFAAGPGPSDSDRELFNL-VLQHAPYQEADAEVWERII 117

Query: 109 D--NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIR 164
              N  ++ + FD S   AR +         K +S  +L   +  D        ++ +I 
Sbjct: 118 KFLNGYSLKDLFDASGQDARSD--YCRAFNLKGYSIEDLFDASGQDTRSDYCRAFQKIIA 175

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            +     + A     P D+    + +L   D             ++   CG G  L + +
Sbjct: 176 EY----GDPARVASLPVDLSLFMSRVLNIQDK----------DRVFFAGCGVGTALLNCV 221

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                        P    + Q+            + +   +       +  + +   + +
Sbjct: 222 A----------NEPANYVYAQDSIITNALSARVHLALFGCDHSKVPAKNL-LLEPDFIEE 270

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D    K+F   +S P  G    +    +    +    GRF   L  +     L L H+A+
Sbjct: 271 DK-NLKKFDCVISLPQMGSVSSR----IAARLRKDPFGRFPETL--VGRRFTLELAHMAH 323

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       GR AI+L +  L    +      IR  ++  + ++A++ +P          
Sbjct: 324 TLHAMKPSAGRGAILLPARFLSIESS----HLIRAHIVSVNYVDAVITIPRSYIPSLTFD 379

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-K 463
             + +L   K +E    V  ++ +               ++ D    IL     R++G K
Sbjct: 380 MAVLVLKMDKQDE---NVLFVDNSSF------------KLDPDYLMDILQ---KRQDGYK 421

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            S ++        +  +            
Sbjct: 422 GSMLVTTTKIHGNKYNLYPGRYRKDTRTS 450


>gi|147921508|ref|YP_684677.1| putative DNA methyltransferase [uncultured methanogenic archaeon
           RC-I]
 gi|110620073|emb|CAJ35351.1| putative DNA methyltransferase [uncultured methanogenic archaeon
           RC-I]
          Length = 723

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 87/299 (29%), Gaps = 51/299 (17%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLD--------------------------PDDA 197
           +R+ S  S       TP  V        +                           PD+A
Sbjct: 120 KRYRSVSSRDNGVVYTPAGVARFICRKTIGQWLLRQVNRQFGRSYVTQDEMIEACSPDEA 179

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ------------ 245
                      + D +CGTG FL  A   +    +           GQ            
Sbjct: 180 WKAREILNRARILDSSCGTGVFLQAAAEEMTRLKATFDPDRHESDIGQIFQHTLENNISG 239

Query: 246 -ELEPETHAVCVAGMLI----RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
            +++     +  A +++              L    +       +    +++   + NPP
Sbjct: 240 TDIDENALKIARARLMLSLRKAGHLKGKGIRLQIEKRNALLPGPEPPRTEQYDIIVGNPP 299

Query: 301 FGKKWEKDKDAVEKEHKNGELGR--FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           + +     +   +   +   L       GL ++ DG++        +        G   +
Sbjct: 300 YMRIKSMYRGETDGLQRKKTLASEIMKSGLYRLQDGNLNLYKLFIERNLSLLKADGSMGL 359

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWILSNRKT 415
           ++ S  L    +      +RR + +   +E IV +P  +  F   N AT + +L   + 
Sbjct: 360 IIPSPFLNEASSAG----LRRHIFDTCTVEEIVEIPEKVRAFGVVNQATAILVLHKGEP 414


>gi|310828858|ref|YP_003961215.1| putative DNA modification methyltransferase [Eubacterium limosum
           KIST612]
 gi|308740592|gb|ADO38252.1| putative DNA modification methyltransferase [Eubacterium limosum
           KIST612]
          Length = 672

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 82/270 (30%), Gaps = 29/270 (10%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +L  +GL+++  K F       +     V+  +YE  + R      +    F TP  + 
Sbjct: 80  GKLTLSGLIWEDVKRFIEDTDSFENKNASVIGELYEECLHR---SHKKSQGIFYTPDVLA 136

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------HKIPP 238
               +L +         S      + DP CG+G  L+ A +++            HK   
Sbjct: 137 EYMVSLCV---------SVVRKEKILDPACGSGSLLSAAYDYILKNTKDLEKETVHKRLL 187

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G + +P    V    + ++  +      +          +   F    F   + N
Sbjct: 188 QKSLCGVDKDPLAVLVTRITLALKGEKYCYPAGIMVGDCLDKASAD--FKDSAFDVVIGN 245

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+          ++ E+       +        D S  F       L+      GR   
Sbjct: 246 PPYVGH-----KEIDSEYMKHLKAFYSDVYQNKGDLSYCFFKRGYELLK----DKGRLLF 296

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           + S   +    A +    IR       LI+
Sbjct: 297 LTSRYFMEAYNAQALRKFIREHFTIKRLID 326


>gi|313892837|ref|ZP_07826417.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442620|gb|EFR61032.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 166

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 61/151 (40%), Gaps = 15/151 (9%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GG  A ++    LF   +      +R+ ++EN  + AI+++P+ +F     ++T + I
Sbjct: 2   KKGGTCACIVPDGVLF--GSSKAHVALRKEIIENHHLRAIISMPSGVFKPYAGVSTAIMI 59

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGK 463
            +      + G    +   D+     +   KR+ I D+    I+D +        R+  +
Sbjct: 60  FTK----TQAGGTNHVWFYDMKADGFSLDDKRQPIEDNDIADIIDRFEHIDSESKRKRTE 115

Query: 464 FSRMLDYRTF--GYRRIKVLRPLRMSFILDK 492
            S ++  +        + + +   + +I  +
Sbjct: 116 QSFLVPKQEIVDNGYDLSINKYKEIEYIPAE 146


>gi|20089374|ref|NP_615449.1| hypothetical protein MA0485 [Methanosarcina acetivorans C2A]
 gi|19914268|gb|AAM03929.1| hypothetical protein MA_0485 [Methanosarcina acetivorans C2A]
          Length = 125

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             H+   L      G +AA+ LS + LF G AG     IR+ LLE   +  I+ LPT +F
Sbjct: 12  FQHIHTLLWT----GKQAAVALSGNVLFEGGAGE---TIRKKLLEITDLHTILRLPTGIF 64

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +  ++ T L      K+  +    + +   D  T++ N   K+  +        ++ Y
Sbjct: 65  YANSVKTNLLFFE-AKSVAKEPWTKEVWIYDYHTNV-NHTLKKNPMKYSNLENFINCY 120


>gi|254416835|ref|ZP_05030584.1| hypothetical protein MC7420_1610 [Microcoleus chthonoplastes PCC
          7420]
 gi|196176381|gb|EDX71396.1| hypothetical protein MC7420_1610 [Microcoleus chthonoplastes PCC
          7420]
          Length = 78

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 2  TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
          +  T + A L     +W  A+ L G     ++  V+L    L+ +  A +     + ++
Sbjct: 15 SAKTSNGAKLCFEQTLWTAADKLRGLMDAVEYKHVVLGLIFLKYISDAFQERYQKLDKE 73


>gi|302348051|ref|YP_003815689.1| Site specific DNA-methyltransferase [Acidilobus saccharovorans
           345-15]
 gi|302328463|gb|ADL18658.1| Site specific DNA-methyltransferase [Acidilobus saccharovorans
           345-15]
          Length = 471

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 88/296 (29%), Gaps = 60/296 (20%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP +V +                         DP CG G FL+  +   
Sbjct: 10  SRKEKVYGQFFTPPEVANFIVDFASTFVQEKN--------RAVDPACGDGVFLSALLR-- 59

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                           G +++          M     +S         +        D  
Sbjct: 60  ---------SGFREVWGMDIDGSVLN----RMPEHVRKSAKVLIGDALVMNPLFPQDDAL 106

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   + NPPF  K+ + +D+  + ++ G   R           S    +    +  
Sbjct: 107 PANSFDLVVGNPPFSAKFGRVRDSRLELYELGRGRR-----------SQAIEVLFLERFI 155

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG   I+L      N         +RR++L    +  +V+LP  +F     T   
Sbjct: 156 TLARPGGVIGIILPDGIFIN----KNYEYVRRFIL-KYKVLGVVSLPRGIFRSSLSTTSK 210

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T +  L  RK      +V +  A DL                D+ ++++ +Y  R+
Sbjct: 211 TSVLFL--RKARGDNDEVFMYEARDL----------------DELQEVIRVYRERK 248


>gi|34763072|ref|ZP_00144045.1| Restriction enzyme BcgI alpha subunit [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887271|gb|EAA24369.1| Restriction enzyme BcgI alpha subunit [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 800

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 102/325 (31%), Gaps = 51/325 (15%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +M   Y   +  + S+  +     +TP  +  L   +          +       + D 
Sbjct: 302 DIMGTFYSLFLVYYASD--KKKGIVLTPNHITSLFCDIAEYFRGKPIDKET----IILDI 355

Query: 213 TCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
             G+GGFL  A+N++            +   +  K        G E  P    +  A M 
Sbjct: 356 CTGSGGFLIAALNYIDKSIDEDDTLTESQKQNEKKKARKNCLIGVEQAPSMFMLAYANMN 415

Query: 261 IRRLESDPRRDLSKNIQQ----GSTLSKDLFTGKRFHYCL---SNPPFGKKWEKDKDAVE 313
                S    +L+  +        T   +L     F   L          K EK+K   +
Sbjct: 416 FHGDGSSRLYNLNSLLSNVYDGEQTFGSELCKLYDFDGSLRKKITKDIEGKIEKNKKEED 475

Query: 314 KEHKNGELGRFGPGLPKISDG-----------SMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K+++N         L K +                    +  +L+    GG   AIV   
Sbjct: 476 KDYENRIRDLVIAELFKKNGADIGMINPPYGKDFNEYDFINAELKYLKEGGIGLAIV--- 532

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-----TNIATYLWILSNRKTE- 416
            P+ N  A   + +I   LLEN  + A + +P  LF        ++ T + +    +   
Sbjct: 533 -PVSNQGASKDKDKI--ALLENHSLLASILMPLQLFTNICNSGASVGTCILVFKAHQPHK 589

Query: 417 ---ERRGKVQLINATDLWTSIRNEG 438
              E  G+  L +  +    I  + 
Sbjct: 590 YFLEDGGRTFLADWREDGFKIIAKH 614


>gi|298531182|ref|ZP_07018583.1| hypothetical protein Dthio_PD0425 [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509205|gb|EFI33110.1| hypothetical protein Dthio_PD0425 [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 116

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 3  EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
             G+     N +W  A+ L G    +++  V+L    L+ +  + +   
Sbjct: 38 HNNGANLGFENQMWAAADKLRGHMDASEYKYVVLGLIFLKYISDSFQAKY 87


>gi|227893247|ref|ZP_04011052.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
 gi|227864930|gb|EEJ72351.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
          Length = 338

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 104/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E     +   +  S     L+ D +  +  + ++  L 
Sbjct: 30  SFTEALVETFD--NLEQGKIKVENGAPDHATVEKLSKKYQALNYDQISQKDKAQVFTFLT 87

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP  +  +   L+        K        + DPT GTG  L   
Sbjct: 88  LKAVNDDGLNANQMPTPPAISTVIAMLM-------HKLLKDEKMEVVDPTVGTGNLLFSI 140

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +  +                G + + E   +      +  ++ +     +          
Sbjct: 141 VAQLKALNH---SKDNYQLVGIDNDEEMLNLADVAAHLNDIDIELYCQDALMPWMCP--- 194

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         ++   KN E  R   G    S   +L +  + 
Sbjct: 195 -------NADAIVSDLPIGYY------PIDNNAKNFE-NRAKKGH---SLAHLLLIEQII 237

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 238 KNLKP----NGYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFRNKFN 289

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   + +  +V L
Sbjct: 290 QKSILVFQNHGDQAKASEVLL 310


>gi|254412611|ref|ZP_05026384.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196180346|gb|EDX75337.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 1053

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 87/293 (29%), Gaps = 53/293 (18%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D +P   +S+IYE  +R   +          TP  +V      +L  D  ++      
Sbjct: 324 SFDAIPLEFISSIYEEFVRENTT----DKGVHYTPGHIVDFILDGVLPWDSEVWDI---- 375

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAV 254
              + DP CG+G FL  A   +            +              G ++ P+   V
Sbjct: 376 --KILDPACGSGIFLVKAFQRLIHRWKKANGGAEITSNILKSLLERNLFGIDINPQAVRV 433

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQG----------STLSKD------LFTGKRFHYCLSN 298
               + +   +    R   + ++                +D           ++   + N
Sbjct: 434 ASFSLYLTMCDEIDPRHYWQEVRFPRLRDRQLICADFFREDREEFRTQLDADQYDLVVGN 493

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            P+GK        + K               + S G +  L     K       GG+ A+
Sbjct: 494 APWGKN---SMTPLAKSWAKD-------NQWETSYGDIGLL--FLPKAAALTKPGGQIAM 541

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLW 408
           +  +  L   + G+   + R  L     IE IV L      LF      T + 
Sbjct: 542 MQPALALIFNQVGTA-KKFREKLFSQFKIEEIVNLSALRFGLFKDAISPTCII 593


>gi|283956930|ref|ZP_06374403.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791656|gb|EFC30452.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 249

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 76/249 (30%), Gaps = 26/249 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
           + N I K  + L  D   +        I     L+ L+      +       + Y +   
Sbjct: 1   MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD----- 119
                  +         +       +         L  Y+ +F +N    F+  +     
Sbjct: 61  EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNN--DDFKSIEYKIGG 118

Query: 120 -FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F     R+     L ++      I  + +      +  +YE L++  GS+      +F 
Sbjct: 119 IFEFIDNRIANGHTLREVINIIDEISFNKED-EVFALGEVYEKLLKDMGSDGGNS-GEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR ++     ++           P     +YDP+CG+ GFL ++  H+           
Sbjct: 177 TPRPLIKAMVEVI----------DPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKA 226

Query: 239 ILVPHGQEL 247
            L     E 
Sbjct: 227 NLSVEELEF 235


>gi|317178177|dbj|BAJ55966.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16]
          Length = 676

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 120/349 (34%), Gaps = 64/349 (18%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            S   + + +  + + +  I    +    +    +  GI  +   +       ++  + R
Sbjct: 292 QSIISSLEPLLRNKNNNKAINGESRLKRCFSEIVDSLGIY-YKIGLSMDFTGKLFNEMYR 350

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                  +  +  +TP  V  L   L     D+           ++D   G+ G L  +M
Sbjct: 351 WLDFTKDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATGSAGLLVASM 400

Query: 225 NHVADCGS---------HHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           N + +              KI  I      G E+  + H + V  M++    S    +  
Sbjct: 401 NLMIEDAKRCITSPKELEQKIVHIKAKQLLGIEIRQDIHTLAVLNMILMGDGSSQILNQD 460

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                   ++ + F    F   + NPP+    +                           
Sbjct: 461 SLSGFDGKVNNEAFKANAF---VLNPPYSASGKG-------------------------- 491

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             M+F+     K++      G A++++ SS    G   + E  +R  +LE   + A + +
Sbjct: 492 --MVFVEQALEKMQ-----SGYASVIIQSS---TGSGKAKEYNVR--ILEKHTLLASIKM 539

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K +
Sbjct: 540 PLDLFIGKSSVHTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKKAK 588


>gi|308062175|gb|ADO04063.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Cuz20]
          Length = 121

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVREKYLA 61
              L N IWK A +L G     DF + +L     R +   +      E  +      Y  
Sbjct: 16  RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERKRDPSFDYAK 75

Query: 62  FGGSNID--LESFVKVAGYSFYNTSEYSLSTL 91
                 +   E  ++  G+    ++  +  +L
Sbjct: 76  LSDEEAESAKEGLIEEKGFFIPPSALAAFFSL 107


>gi|295087087|emb|CBK68610.1| Type I restriction-modification system methyltransferase subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 197

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 16/144 (11%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++ +  +L+      GRAA+++    LF       +  I+  LL++  +  I+ LP  +F
Sbjct: 1   MVLIMYRLKA----NGRAAVIVPDGFLFGVD--GAKLAIKTKLLKDFNLHTIIRLPGSIF 54

Query: 399 F-RTNIATYLWILSNRKTEERRG--KVQLINATDL-WTSIRNEGKKRRIINDDQRRQILD 454
              T+IAT +   +N + E+       +      L          K + +  +  + I +
Sbjct: 55  SPYTSIATNILFFNNERVEDAPDGYSTKETWFYRLDMPDGYKHFSKTKPMKLEHCQPIKE 114

Query: 455 IYVSREN------GKFSRMLDYRT 472
            +  R+        + SR    + 
Sbjct: 115 WWHDRKEIVSQDGNEKSRCFSVQD 138


>gi|304312533|ref|YP_003812131.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301798266|emb|CBL46488.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 674

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 102/330 (30%), Gaps = 66/330 (20%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-----------TDA 223
             + TP +V  +A  +L           P     + D + GTG FL             A
Sbjct: 319 GRYPTPLNVAEMAVEML----------DPQPGERIMDCSSGTGTFLAMTAAHIFKKKLAA 368

Query: 224 MNHVADCGSHHKIPPILVPH---------GQELEPETHAVCVAGMLIR-----RLESDPR 269
           M    D  ++ +I                G +++P         +L       R+     
Sbjct: 369 MGTTPDEATNEQIRQAQNETAAWAASNALGCDIDPFLAVASRMNLLFTTGNPGRVFRIDA 428

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           R        G   ++           L NP F  K     +++   +  G++     G  
Sbjct: 429 RTFPDGDLDGIEAARPAMPLASMDMILLNPWFSTKDVVADESILSRYDLGKVWNKEQGGD 488

Query: 330 KISDGSML-------FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
              +   +        ++ +   L+    G GR  I+L    L       G+  IR W+L
Sbjct: 489 GYVNSGAINTGGVPPEVLFIERALDWVKPGTGRIGILLPDGVL----GNPGDEYIRWWIL 544

Query: 383 ENDLIEAIVALPTDLF------FR-TNIATYLWILSNR------KTEERRGKVQL----- 424
            +  + A V LP + F      +  T     L +L  R       TE    KV +     
Sbjct: 545 RHCEVLASVDLPVEPFKVTVKEYGLTPALPSLLVLRRRSQEELINTEHPEYKVFMAVVDR 604

Query: 425 --INATDLWTSIRNEGKKRRIINDDQRRQI 452
             ++A       R    +  + +++   ++
Sbjct: 605 AGVDARGNLLFQRAPDGEELVFDEEVIERV 634


>gi|313884106|ref|ZP_07817872.1| hypothetical protein HMPREF9257_1056 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620553|gb|EFR31976.1| hypothetical protein HMPREF9257_1056 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 80

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RF 292
           K P  +  HGQEL   T+ +    +++  + ++  R  +       TL+KD  + +   F
Sbjct: 2   KYPNSVHYHGQELNTTTYNLAKMNLILHSVPTEYMRLSN-----ADTLNKDWPSDEPYTF 56

Query: 293 HYCLSNPPFGKKWEKDKDAVEK 314
              L NPP+  KW  D   ++ 
Sbjct: 57  DAVLMNPPYSAKWSADSTFLDD 78


>gi|283782441|ref|YP_003373196.1| type I restriction-modification system methyltransferase
           subunit-like protein [Pirellula staleyi DSM 6068]
 gi|283440894|gb|ADB19336.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Pirellula staleyi DSM 6068]
          Length = 531

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 99/282 (35%), Gaps = 26/282 (9%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                A    TP  +  L   + L             I  + DP CG G  L  A + + 
Sbjct: 9   RARHDAGVVYTPATLARLLAEVSLAALHQAGIPKDRTILQIVDPACGEGALLQAASDELK 68

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             GS       +   G +++P   A+  AG L+         D+   +Q    L +    
Sbjct: 69  RVGS---PAESVHFTGYDIDP--VAIHRAGSLV-----GNSSDVGAQLQVADALDRAAIA 118

Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            ++F   LSNPP+   +    + + EK        +   G         L+++ +   LE
Sbjct: 119 NQQFDLVLSNPPYVSIRRLTQQASREKIDAYKRDYQSACGCF------DLYVLFVERCLE 172

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATY 406
           L    GG   +++ S       A +     RR +LE  L+E ++ L    +F    +   
Sbjct: 173 LVKP-GGICGLLVPSRIAAMKYATA----CRRLVLEQTLVE-VIDLSKLMMFRGAKVYPC 226

Query: 407 LWILSNRK-TEERRGKVQLI-NATDLWTSIRNEGKKRRIIND 446
           + ++       E R +V  I +  DL   +     + R   +
Sbjct: 227 ILVIRRAPAPSEHRVRVTHIEDRADLSQRVLTLVPQSRFSTE 268


>gi|225352841|ref|ZP_03743864.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156330|gb|EEG69899.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 63

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            G   IVL    LF    G  E +IR+ L+EN  I+AI+ LP ++FF T I 
Sbjct: 5   DGIMTIVLPHGVLFR---GGEEGQIRKNLIENRHIQAIIGLPANIFFGTGIP 53


>gi|322513898|ref|ZP_08066976.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976]
 gi|322120267|gb|EFX92217.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976]
          Length = 595

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 93/306 (30%), Gaps = 69/306 (22%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + +   +          + S      +   + VM   +    R    +    +    TP 
Sbjct: 229 NVVENQDDINSFIDSVIDISHSVNSDNWNGEDVMGIFFNEFNRY---KKKSESGQVFTPE 285

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGS----HHKI 236
            +      L+                 + D TCG+GGFL  AM N + + G       + 
Sbjct: 286 HITSFMYDLI----------GVSHNDKVLDATCGSGGFLVKAMANMIKEVGGINTIEAEN 335

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFH 293
                  G E + E  A+  A MLI        +D   N++Q  T      +    K   
Sbjct: 336 IKKYQLFGIEFDREIFALACANMLIH-------KDGKTNLEQLDTRETQACEWIKSKPIT 388

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L N P+ +K                      G  K           +   +      G
Sbjct: 389 KVLMNTPYERK---------------------YGCKK-----------IVENVLENVPIG 416

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            + A +L    L   + G         LL+   +E+I+ LP  LF    + T +++    
Sbjct: 417 TKCAFILPDKKLEKDKMGG--------LLKKHTLESIIKLPESLF-DAGVTTSVFVFETG 467

Query: 414 KTEERR 419
           K ++ R
Sbjct: 468 KPQKER 473


>gi|315284447|ref|ZP_07872160.1| type I restriction-modification system, M subunit [Listeria marthii
           FSL S4-120]
 gi|313611908|gb|EFR86338.1| type I restriction-modification system, M subunit [Listeria marthii
           FSL S4-120]
          Length = 179

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 30/169 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSA----------- 54
           ++  +   +W  A +L G    + +   +L     + L    LE  +S            
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEKYKSMADKGQLSEAEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----------NNLESY 103
           V E          +L+  ++     F        + L                 NN E  
Sbjct: 63  VEEYAKDRAYHGENLDKMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 IA--SFSDNAKAIFED--FDFSSTIARL---EKAGLLYKICKNFSGIEL 145
           IA    SD+ + +F     D + T       E++  +  + + F  + +
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNM 171


>gi|282915750|ref|ZP_06323520.1| type I site-specific deoxyribonuclease methyltransferase subunit
          [Staphylococcus aureus subsp. aureus D139]
 gi|284023308|ref|ZP_06377706.1| type I restriction-modification system M subunit [Staphylococcus
          aureus subsp. aureus 132]
 gi|284023441|ref|ZP_06377839.1| type I restriction-modification system M subunit [Staphylococcus
          aureus subsp. aureus 132]
 gi|282320379|gb|EFB50719.1| type I site-specific deoxyribonuclease methyltransferase subunit
          [Staphylococcus aureus subsp. aureus D139]
          Length = 51

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 1  MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA 47
          +TE      A L   +W  A DL G+   ++F   IL     R L   
Sbjct: 3  ITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEK 50


>gi|320354541|ref|YP_004195880.1| hypothetical protein Despr_2450 [Desulfobulbus propionicus DSM
           2032]
 gi|320123043|gb|ADW18589.1| protein of unknown function DUF450 [Desulfobulbus propionicus DSM
           2032]
          Length = 713

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 120/408 (29%), Gaps = 103/408 (25%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +T   L++ I    D A A +E   F   +        L     +   ++L    +   V
Sbjct: 248 DTETELKAKIQDLFDKACAKWEGV-FPENVKIDLTPSHLAVCVSSLEKVKLFNSNLE--V 304

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   +E+LI +           + TPR V+ +   +L          +P    TL D   
Sbjct: 305 VDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------NPQAHETLIDTAA 351

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV----------C 255
           G+ GF    + +V +     +          + +P         +  A+           
Sbjct: 352 GSCGFPVHGIFYVWEQIMKEEGLAKSHLFTTDKKPARCEDYVRDKVFAIDFDEKAVRVGR 411

Query: 256 VAGML----------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------------FH 293
              ++          +  L+ +   + + +        +     ++            F 
Sbjct: 412 TLNLIAGDGQTNVLHLNTLDYERWDEKTSDETWIDIYGEGWKKLRKLRLDKTSNRDFGFD 471

Query: 294 YCLSNPPFGKKWE------------------------KDKDAVEKEHKNGEL-------- 321
             ++NPPF    +                        KDK+ V    +            
Sbjct: 472 VLMANPPFAGDIKETRILAKYDLARSVRLDKIGKVDPKDKNIVTAHDRAPSFTEALHASH 531

Query: 322 --------GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                   G +     K  +     ++ +   L      GGR A+VL           + 
Sbjct: 532 EVIYQMADGTYRKVKVKNQNKVGRDILFIERNLNFLKP-GGRMAVVLPQGRF----NNAS 586

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRG 420
           + ++R +L  +  I A+V L  ++F   T   T +  +     + + G
Sbjct: 587 DKDLREYLAAHCRILAVVGLHGNVFKPHTGTKTSVLFVQKWNDDSKAG 634


>gi|307638127|gb|ADN80577.1| type II S restriction enzyme M protein [Helicobacter pylori 908]
          Length = 599

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 100/293 (34%), Gaps = 63/293 (21%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +       ++  + R  G    +  +  +TP     L   L     D+           +
Sbjct: 338 LSTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYAATLLARLSKVNKDSF----------V 387

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAG 258
           +D   G  G L  +MN + +        P                G E+ P+ H + V  
Sbjct: 388 WDFATGNAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLN 447

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M++    S    + +        ++   F    F   + NPP+                 
Sbjct: 448 MILMGDGSSQILNQNSLSGFDGKVNDKEFKANAF---VLNPPYSASGNG----------- 493

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            M+F+     K++      G A++++ SS    G   + E  +R
Sbjct: 494 -----------------MVFVEQALAKMQ-----SGYASVIIQSSA---GSGKAKEYNVR 528

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
             +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++L
Sbjct: 529 --ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNL 579


>gi|229088737|ref|ZP_04220294.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44]
 gi|228694562|gb|EEL47981.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44]
          Length = 548

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 134/393 (34%), Gaps = 47/393 (11%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           LE   +    +  + Y      + DL    K      Y+        L S   R      
Sbjct: 40  LEVNYQEFEDSFNQYYSKVKELSGDLVKVDKEIALKNYSLEVVLFCLLCSIFKR--YLEV 97

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I +   + K I   +D +   A  E   +  +  +      +    +   ++S+IYE   
Sbjct: 98  IFNIKLDYKYIANRYDTNGFYAWFE---MKNRNVELIDNYIIQEGELGSELISSIYE--- 151

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           +   +E  +    F TP ++V+L        +  L K      +++ DP CG G FL + 
Sbjct: 152 KSLNAEEKKRLGQFYTPNNIVNLMID-----ETNLRKIDFNNTKSIIDPACGAGIFLVNI 206

Query: 224 MNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGM---LIR-------RLESDPRRD 271
           +  +        +  I+    HG ++ P    +    M   L+         +E   +  
Sbjct: 207 IKMMKKRNQGLSLAKIIYNSLHGNDINPFAIFLTKLNMSCELLNTMKVPEEVMEFLDKYA 266

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             KNI   +T+++D    +++ Y + NPP+ K  +K     E   +         G    
Sbjct: 267 DFKNIVLVNTITED--NDEKYDYIIGNPPYFKLSDKKFKNHEMYTEIMYGQPNIYG---- 320

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSS--SPLFNGRAGSGESEIRRWLLENDLIEA 389
                   + +   L+     G  + IV  S  S L+     +  S+ R   L N     
Sbjct: 321 --------LFIYWSLKHSKENGYISLIVPQSFKSGLYFLNLRNELSKYRIKSLINFKSRT 372

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
                  +F     A  +  + N+K  + + KV
Sbjct: 373 ------KIFKNVLQAVIIMTIKNQKKGKAKVKV 399


>gi|315924179|ref|ZP_07920405.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622581|gb|EFV02536.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 655

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 114/356 (32%), Gaps = 55/356 (15%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASF 107
            T+ A+++ Y     +  +LE+F ++              LS          L   +A +
Sbjct: 6   KTKQAIQKCYEDLQKNASNLEAFNRLLALMVARILGDRKILSIHDFRAHCPTLPQIMAGW 65

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             +  A  ED+  S+                    + L P+      + + Y+ LI +  
Sbjct: 66  KQDVLAAEEDWGASALQGLTRPLPNSGGRLLRDPSLCLAPE-----FLGDYYQWLIPK-- 118

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +    F TP D+  L  + L D             R + DP CG G  L+   +  
Sbjct: 119 -TERQTRGIFYTPSDLAELMASHLAD------------ARRVLDPACGAGSLLSAVYDFQ 165

Query: 228 ------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                       H+        G +++P    +    + ++  E        +NI  G  
Sbjct: 166 MARCMDESQRDRHRTLLKDDLWGMDMDPAAVWLTRCRLALKSNEYV----YPRNILTGDA 221

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSM 336
           L  D    KRF   + NPP+              H+     R      + S      G +
Sbjct: 222 LFSDKIATKRFDGVIVNPPYMG------------HRRMPFKRMAALRERYSAVYGDKGDL 269

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            +         L P G    A+ L+S      + G     +RR+L++   +E ++ 
Sbjct: 270 AYCFFALAHRVLKPKG---CAVFLTSRYFMEAQNGEP---LRRFLMQRMHVETLID 319


>gi|323463227|gb|ADX75380.1| putative DNA methyltransferase [Staphylococcus pseudintermedius
           ED99]
          Length = 586

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 112/319 (35%), Gaps = 35/319 (10%)

Query: 157 NIYEHLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             +E  +   F    ++      TP +VV+L     +  D   + +       + DP+ G
Sbjct: 50  EAFEKFMYFDFDKVDTKNFGITFTPTNVVNLLFDETIGEDFKKYSQK-----KVLDPSIG 104

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR-RDL 272
           TG F    +    +   +  +   +    +G +++ E    C   +++  L  D    DL
Sbjct: 105 TGNFFIKFLIKQKELDKNFSLVEFIENNLYGYDIKIENIFFCKLNLILLCLIFDEDVEDL 164

Query: 273 SKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             NI     + +  +      F   + NPP+ K+    ++  E   +N +          
Sbjct: 165 KFNIFHSDIILEYLNGTLETNFDLIIGNPPYVKQQNIKENYREILKRNFD---------- 214

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
               +               N  GR   ++ +  L    A      +R  L++++ IE I
Sbjct: 215 TIYSNYNLYYSFIELSTKLLNENGRIIFLVPNYILKIKSA----QYLRELLIKDNWIEKI 270

Query: 391 VALPTD-LFFRTNIATYLWILSNRKTEER------RGKVQLINATDLWTSIRNEGKKRRI 443
           +   T+ +F  + I TY  ILS +K  +       +   + I+  D      N      I
Sbjct: 271 IDFETNKIF--SGIDTYTMILSMKKNSDTTFFKIIQDPNKPIDEIDWKAKKINFNHLNSI 328

Query: 444 -INDDQRRQILDIYVSREN 461
            +  +   +++    ++ N
Sbjct: 329 DLVSEHEEKLIKAVTTKPN 347


>gi|282932147|ref|ZP_06337600.1| N-6 DNA methylase [Lactobacillus jensenii 208-1]
 gi|281303726|gb|EFA95875.1| N-6 DNA methylase [Lactobacillus jensenii 208-1]
          Length = 57

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
          M   +       + +W   ++L G    +++  V+L    L+ +  + E  R  + +
Sbjct: 1  MASKSNDL-KFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK 56


>gi|33151530|ref|NP_872883.1| type II DNA modification (methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|33147750|gb|AAP95272.1| possible type II DNA modification enzyme (methyltransferase)
           [Haemophilus ducreyi 35000HP]
          Length = 446

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 17/190 (8%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++ I +     L   I + F+  +    T    +M   YE  + RF    +      +TP
Sbjct: 261 NTNILKEILKELDENIIQLFN--DTFSTTSNYDIMGKFYEEFL-RFAGVSNVKKGIVLTP 317

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPI 239
           R +  L T L+    +            + D  CGTG FL   MN +    G   +    
Sbjct: 318 RHIATLFTKLIPFKKN----------DKILDLCCGTGAFLIAGMNKLLSLKGIDAQNVKS 367

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G E+ P  +   ++ ML R    D +  +             + +         NP
Sbjct: 368 NQLLGFEINPTMYICAISNMLFRG---DGKSKIYNMDSINDDKVNKIISESAPTIGFINP 424

Query: 300 PFGKKWEKDK 309
           P+  K  K+ 
Sbjct: 425 PYSGKENKED 434


>gi|315638302|ref|ZP_07893483.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           JV21]
 gi|315481649|gb|EFU72272.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           JV21]
          Length = 1040

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/463 (14%), Positives = 146/463 (31%), Gaps = 62/463 (13%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
                +   E   +  R  +  F   ++  +S +     SF    E++ +   + N  + 
Sbjct: 200 FFEFFKRTYESFLAIQRYGFDEFDFCDLIAQSVIYGLFVSFVENKEFAFNEDETQNFISY 259

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L     + S+       +FD    + ++ K         +   +    +   +++   +Y
Sbjct: 260 LPKNFKTLSELVYFSLPNFDLPEQVKQVLKNIQKTIALLDKPTMAKFLNLELEQIAIYLY 319

Query: 160 EHLIRRFGSEVS----EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPT 213
           E  I+ +         +    F TP+ VV +  + L +   + F ++    +++   D  
Sbjct: 320 EDFIKAYDELKGTQKRKEGGVFYTPKSVVKMIVSSLDELLKSKFNKTGFNDKSVKVLDFA 379

Query: 214 CGTGGFLTDAMNHVADC---------------GSHHKIPPILVPHGQELEPETHAVCVAG 258
            GTG FL      + +                    K   +   +G EL    + V    
Sbjct: 380 TGTGSFLAFVCEKILEQQHSLSQNESFKQATQNEAIKNKFLEDIYGFELSFVPYIVARLK 439

Query: 259 ML--IRRLESDPRRDLSKNIQQGSTLS-----------------------KDLFTGKRFH 293
           ++  +++   D   +    I   +TL                        +D+   K   
Sbjct: 440 LMQILKKKGYDKVNEADFQIYLNNTLDLSNQAHYELKIPLFYLDAEWKKARDVKHDKNLL 499

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L NPP+  K +     + +  K  +       +  + +  + F+     KL    +  
Sbjct: 500 VILGNPPYNAKSKNKGKEILELLKIYKENLNETNIQPLDNDYIKFIRFSQWKLLEQGSST 559

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT----------DLFFRTNI 403
           G    ++ +S L     G     +R  L ++     I+ L            ++F    I
Sbjct: 560 GLMGFIIPNSFL----DGRIHRNMRESLYKSFDEIYILNLHGSSEKDAKNDENVF-DIKI 614

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
              + +    K E  +G      A+     I    +K  +++D
Sbjct: 615 GVCISLFIKYKNEPSKGATIFY-ASTAQKGIFKRAEKYALLDD 656


>gi|269797183|ref|YP_003311083.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
 gi|269093812|gb|ACZ23803.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
          Length = 577

 Score = 67.9 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 24/198 (12%)

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G    KD+   + F   L+ P     W     A+E   +   L +      K++DG    
Sbjct: 194 GIIQPKDIVENQLFDRILTMPL----WRPSSKAMEYFPERTSLSKLDVPESKVADGEWHE 249

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++   + L    +  G+   ++++S L N  +     + R+ L+EN  IE+I+ LP  L 
Sbjct: 250 ILFNLSLL----DQNGKMVTLITNSTLANNLS----VKTRQALVENGYIESIIELPDRLL 301

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T I  Y  +LS          V+ ++A+  +         +R   D     +L+   +
Sbjct: 302 ENTGIELYAVVLSYGNKG-----VKFLDASQAYVE-------QRRRKDIDVATVLEDLAN 349

Query: 459 RENGKFSRMLDYRTFGYR 476
            E  KF  +      GY 
Sbjct: 350 PEICKFESIESIAREGYN 367


>gi|120553351|ref|YP_957702.1| restriction modification system DNA specificity subunit
           [Marinobacter aquaeolei VT8]
 gi|120323200|gb|ABM17515.1| restriction modification system DNA specificity domain
           [Marinobacter aquaeolei VT8]
          Length = 588

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 32/241 (13%)

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L +      R  + ++   LF+  + S    IR  L+ N+ ++A+V LP      T 
Sbjct: 253 LAVLRVARECTSRGVVCVAPGVLFSRASMS----IREELINNNWLDAVVGLPKGTLTNTA 308

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD--QRRQILDIYVSRE 460
           +   L ++      E+   +  + A++            R + ++     Q +      E
Sbjct: 309 VPPVLLVIDKH--REKDSPIAFVEASE------------RQLAEEIGDLAQAIRDRRDSE 354

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA--RLEADITWRKLSPLHQSFWLDI 518
           NG F+  LD +   Y  + + R         K GLA  +L        L  + +      
Sbjct: 355 NGTFASNLDIQKNDY-DLTISRY--------KPGLAAQKLRRLKNTVSLDGVAEIVRAQS 405

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           LK          + E+ V++  ++   +T  VK           A  ++    D +  + 
Sbjct: 406 LKDADDNPDAAIFLEASVRDINETGCLETP-VKEMHIDKKQLRRAQNQRIYPGDILLAIK 464

Query: 579 G 579
           G
Sbjct: 465 G 465


>gi|229491839|ref|ZP_04385660.1| type II restriction-modification system DNA adenine-specific
           methylase [Rhodococcus erythropolis SK121]
 gi|229321520|gb|EEN87320.1| type II restriction-modification system DNA adenine-specific
           methylase [Rhodococcus erythropolis SK121]
          Length = 589

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 48/259 (18%)

Query: 183 VVHLATALL---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           +  +  +LL   + P + +  +   +   + DP C  G  L    +   D          
Sbjct: 112 LAQVMVSLLPEWIAPHNPVASDDANVP-IVLDPACAGGTVLAAVADLFGDR--------- 161

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY----- 294
           +   GQ+++ E  A   A +L+R    D R D+            D F   RF       
Sbjct: 162 VALVGQDIDEE--AASEAALLLRGRPDDVRYDVQSG---------DSFLDNRFEKYLGEA 210

Query: 295 --CLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
              +  PP G+ +W  D+ A +         R+  G+P   +  + ++ H    L     
Sbjct: 211 AAVVCEPPLGQSRWPMDELATD--------PRWEFGIPSARESELAWVQHCYAHLRP--- 259

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GG A +++S          S    IR  L+   ++  ++ALP+ L    +   Y+W+L 
Sbjct: 260 -GGVAVVMVS----MRTCMQSSGQHIRAALVRAGVLRDVIALPSGLGSLPDTDLYVWVLQ 314

Query: 412 NRKTEERRGKVQLINATDL 430
                     V++ + + L
Sbjct: 315 KPIGHPEFAPVRMTDLSGL 333


>gi|229826486|ref|ZP_04452555.1| hypothetical protein GCWU000182_01859 [Abiotrophia defectiva ATCC
           49176]
 gi|229789356|gb|EEP25470.1| hypothetical protein GCWU000182_01859 [Abiotrophia defectiva ATCC
           49176]
          Length = 671

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 80/256 (31%), Gaps = 39/256 (15%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+  +Y   I    +   +    + TP  V       L+       K        + DP
Sbjct: 187 DVIGLLY---ISLKNTGERKSQGCYYTPSKVAKKICDNLIIFGKTENK-------KILDP 236

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CGTG F+    +                 +G +++  +  +      +R    D     
Sbjct: 237 CCGTGNFILQIPDCF----------DYKNVYGNDIDSLSVKLARINYALRYKVGDKELIY 286

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +            ++F Y L NPP+G K+  ++             RF        
Sbjct: 287 NHITELDYLYF---PKNRKFDYILGNPPWGYKYSHEEKIKLHC-------RFNCATSLSI 336

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +   +F+    N L++     G  + +L  + L         + IR+ +LE    + I  
Sbjct: 337 ESYDVFIEQALNNLKI----NGTLSFILPHAVL----NVKSHTPIRKLILEKCSFDYIEF 388

Query: 393 LPTDLFFRTNIATYLW 408
           L +  F      + + 
Sbjct: 389 L-SKTFDNVCCPSIIL 403


>gi|145642017|ref|ZP_01797589.1| putative type I restriction-modification system,
          methyltransferase subunit [Haemophilus influenzae
          R3021]
 gi|145273288|gb|EDK13162.1| putative type I restriction-modification system,
          methyltransferase subunit [Haemophilus influenzae
          22.4-21]
          Length = 90

 Score = 67.9 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 8  AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
             L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6  HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEEL 65

Query: 63 GGSNIDLESFVKVAGYSFYNTSE 85
            + +D     K+    F     
Sbjct: 66 AFTELDDLPLKKLPAMFFITPRN 88


>gi|159898715|ref|YP_001544962.1| superfamily II DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891754|gb|ABX04834.1| DNA or RNA helicase of superfamily II [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1021

 Score = 67.5 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 103/332 (31%), Gaps = 39/332 (11%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            N      + IA+  +   A      FS     L      YK  +N S   +   +    
Sbjct: 227 DNPDFVRRNAIAAELEKVIAALPKRAFSRDKF-LASLDYFYKAIEN-SARTISDYSEKST 284

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTL 209
            ++ +YE   + + +++++      TP  +V         LL D  D+   +       +
Sbjct: 285 FLNTVYEQFFQGYSTDIADTHGIVYTPAPIVRWMVTSVEQLLRDQFDSSLSDK---GVHV 341

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---------- 259
            DP  GTG F+ + +N + +    HK    L  H  EL    + +    +          
Sbjct: 342 LDPCVGTGTFMLEILNQLQNSTLEHKYRHEL--HCNELLLLPYYIAAQNIEHEFYDRTQN 399

Query: 260 --------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                       LE +  +  +      +               + NPP+    + + D 
Sbjct: 400 YAPFEGLCFADNLEMEANKRQASMFVPENAQRVQQQQDAPIFVIIGNPPYNVGQQNENDN 459

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPL 365
            +         R      K S  S+   ++           +   +  G  A V + S +
Sbjct: 460 NKNRKYPHIDARIRQTYAKSSKASLQTKLYDMYSRFFRWATDRLGDNDGVIAYVSNGSFV 519

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                      +R+ LL++     ++ L  ++
Sbjct: 520 EQIAFDG----MRKELLKDFTSIYVLDLGGNV 547


>gi|297585238|ref|YP_003701018.1| N-6 DNA methylase [Bacillus selenitireducens MLS10]
 gi|297143695|gb|ADI00453.1| N-6 DNA methylase [Bacillus selenitireducens MLS10]
          Length = 707

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 81/486 (16%), Positives = 164/486 (33%), Gaps = 72/486 (14%)

Query: 108 SDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S N +AI     DF+    +++ A   ++     + ++L      D  +  +Y  L    
Sbjct: 151 SSNLRAILNSIIDFN----KIDVAKEDFETLIKINELDLEFIRGED-FLGLLYMAL---S 202

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  + +  F TP  VV        D  D    + P     + DP CG+G FL      
Sbjct: 203 ASKDRKNSGSFYTPSKVVDYIIN--EDSIDYENIDQP----KILDPCCGSGNFLIKIFIS 256

Query: 227 VADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           +        I   +        + +G +++     +    +++  L       L+ NI+ 
Sbjct: 257 LEKEFMKKGIRREIYEKEIINEIIYGYDIDQTAVDLSKINLIL--LTKSQIYSLNPNIEC 314

Query: 279 GSTLSKDLFT------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +TL ++  +         F++ + NPP+G  +  D+     +            +   +
Sbjct: 315 KNTLIEEAPSLFFDSFNHSFNWIIGNPPWGYSFTNDEKKQLNQ------------IYGTN 362

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + S+                 G+ + VL  S L         S IR+ LLEN  ++ I  
Sbjct: 363 NQSIESFALFIRCGLDLLEENGQLSFVLPESLL----NIKIHSSIRQDLLENYNVKKIRK 418

Query: 393 LP---TDLFFRTNIATYLWILSNRKTEERRGKVQLI--NATDLWTSIR---NEGKKRRII 444
           L    +++F   +I   +     ++  E   +++++  + T +    R   NE     I 
Sbjct: 419 LDRAFSEVFTN-SITLTV----KKEIVENDNEIKIVTSDNTVILKQSRFLENESYVLNID 473

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGY----------RRIKVLRPLRMSFILDKTG 494
           +DD+   IL    S     +  +LD +   Y          + I   +      +L    
Sbjct: 474 SDDKHENILKKIKSNVETFY--LLDKQNAEYALGLVTGDNKKYISKEKNGDREVVLKGKD 531

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           + +         L  L   F     +   +      +     K     +  +TL + ++ 
Sbjct: 532 IYKYNFVPGRNYLEFLSNDFQQVAPERFYRAKEKLIYRFINKKLVFAYDNNQTLTLNSAN 591

Query: 555 SFIVAF 560
             I   
Sbjct: 592 ILIPKI 597


>gi|313142448|ref|ZP_07804641.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
 gi|313131479|gb|EFR49096.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 253

 Score = 67.5 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            ILS ++ +    KV  I+A   +       +           +I D Y+S+++   SR+
Sbjct: 2   LILSKQENK----KVFFIDAQKFYLKEGKYNRLTN------IDRIYDEYLSKQDSDISRL 51

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLAR-LEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +DYR       K     +   I D   L   LE     +++        +D     ++  
Sbjct: 52  VDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKDEVLMDCYNVGIKDF 111

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             YG++E F++ S KS++ +  K++     I+  +           P   + GE I D  
Sbjct: 112 EDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS-------PKLAIIGERIGDKR 164

Query: 587 L 587
           +
Sbjct: 165 V 165


>gi|85861003|ref|YP_463205.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB]
 gi|85724094|gb|ABC79037.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
          Length = 51

 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE 49
          MT    + + L +F++K A+ L G    ++F + I     L+RL    +
Sbjct: 1  MTTEKITLSQLESFLFKAADILRGKMDASEFKEFIFGMLFLKRLSDEFD 49


>gi|159898461|ref|YP_001544708.1| superfamily II DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891500|gb|ABX04580.1| DNA or RNA helicase of superfamily II [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1024

 Score = 67.5 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 108/389 (27%), Gaps = 71/389 (18%)

Query: 113 AIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             F   DF   + R   A        +NFS             ++ +YE+  + F  +V+
Sbjct: 253 RSFNRNDFLRELDRFYGAIESTAATIENFS--------HKQDFLNTVYENFFQGFSIKVA 304

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +      TP+ +V      + +     F  S       + DP  GTG FL   M+ +   
Sbjct: 305 DTHGIVYTPQPIVDFMVRSVEELLRREFNTSLGNAGVHVLDPFVGTGNFLLRVMHEIPRS 364

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K    L  H  E+    + +         +E       +   +       D F   
Sbjct: 365 KLRQKYAEEL--HCNEVMLLPYYIASMN-----IEHLYYELTNSYQEFNGICLVDTFELA 417

Query: 291 RFH-------------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGR-- 323
           +                             + NPP+  +   + D  +         R  
Sbjct: 418 QVGAGQQLGLFVPENTERVLKQQQQDIFVIIGNPPYNARQVNENDNNKNRKYEIIDQRVA 477

Query: 324 --FGPGLPKISDGSMLFLMHLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGES 375
             +     + +  ++              +        G  A+V ++S + +        
Sbjct: 478 MTYSRDSQQTNKNALND--PYVKSFRWAADRIIRNGDEGIVALVTNNSFIDDLSFDG--- 532

Query: 376 EIRRWLLENDLIEAIVALPTDL------------FFRTNIATYLWILSNRKTEERRGKVQ 423
            +R+ L ++     ++ L  ++             F   +   +  L  ++   +    +
Sbjct: 533 -MRKHLAQDFDAIYVLDLGGNVRKNPKLSGTTHNVFGIQVGVSIIFLIKKRGSTKASDAK 591

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQI 452
            I         + + K   +   +   +I
Sbjct: 592 -IWYARAGEMWKKQEKFNLLNQAETIDKI 619


>gi|217034514|ref|ZP_03439925.1| hypothetical protein HP9810_873g30 [Helicobacter pylori 98-10]
 gi|216943055|gb|EEC22534.1| hypothetical protein HP9810_873g30 [Helicobacter pylori 98-10]
          Length = 75

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 8  AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
             L N IWK A +L G     DF + IL     R +   +    +    +
Sbjct: 16 RNELHNTIWKIANELRGSVDGWDFKQYILGILFYRYISENMAYYINKQERE 66


>gi|126459362|ref|YP_001055640.1| N-6 DNA methylase [Pyrobaculum calidifontis JCM 11548]
 gi|126249083|gb|ABO08174.1| N-6 DNA methylase [Pyrobaculum calidifontis JCM 11548]
          Length = 504

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 131/380 (34%), Gaps = 31/380 (8%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N  N L +Y  S + + + IF           L     L +I +  + I+     +   V
Sbjct: 62  NIANELFNYAISKTGDFEEIFGVNTVDRLPFMLTSLPKLKEIVRYLNQIKWS--DISVDV 119

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  ++E LI     E         T   +V L    +         +  G    L DP C
Sbjct: 120 IGRVFEGLIY---EERRHLLGQHYTDTKIVDLILTGVF--------KKYGKPDKLLDPAC 168

Query: 215 GTGGFLTDAMNHVADCGSHH----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           G+G FL  A+N+     S      K+P      G +++     +    + I+ LE     
Sbjct: 169 GSGTFLVRALNYWKIFYSTELDKLKMPIYEYVEGVDIDRLASMLAKINLYIQALEKIKEG 228

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLP 329
                        K   +   + Y ++NPP+ K+ E      +K++K   L         
Sbjct: 229 YKYVPKICHDDFFKINLSSD-YAYVVANPPYTKQVEMALAFYDKQYKENLLNYVKDIENW 287

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                   + +    KL       GR   ++ +S L         + +++WL +N  +E 
Sbjct: 288 DERASIYAYFLVRGGKLL---RKNGRLGFIVENSWL----NAEYGAPLKKWLFKNFSVEY 340

Query: 390 IV-ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ +L    F    + T + I     T +    V+ +        +  +         + 
Sbjct: 341 VIESLVERWFEDAAVITNIII--AEMTAQSNYDVRFVFLKKSLRELIGDPPPANDFMANM 398

Query: 449 R--RQILDIYVSRENGKFSR 466
           +  ++I+++Y   +N   ++
Sbjct: 399 QYYKRIMELYYEFDNCTVAK 418


>gi|254192710|ref|ZP_04899146.1| N-6 DNA Methylase family [Burkholderia pseudomallei S13]
 gi|169649465|gb|EDS82158.1| N-6 DNA Methylase family [Burkholderia pseudomallei S13]
          Length = 872

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 110/378 (29%), Gaps = 59/378 (15%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF--EDFDFSSTIAR 126
           +E   +  G     +   +          +     +   + + +     E  D + +  R
Sbjct: 124 IEQHTQADGGRKPLSIPLAEFWALQDRIDDVFNGGVFQIAADKRQSISQERLDLAISFIR 183

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
              +            I+L    V    +S +YE  +R    +  +      TP  +V  
Sbjct: 184 SGASLEGGGQQAALFDIDLTALQVE--TLSAVYEEFLRNEAPDGVKKDGVVYTPSFLVDF 241

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------ 240
               L D      +        + DPT G+G FL  A   + +     +    L      
Sbjct: 242 VVNRLDDEMKLNTES------KVLDPTAGSGVFLVAAFRRIVERTLASRNLQSLPMEELR 295

Query: 241 -----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---------------- 279
                   G E      AV    + +  LE     +L   +  G                
Sbjct: 296 SILQNSIFGIEKSSSAAAVTAFSLYLNLLEYCSEDELLAAVHHGRRPRVFPALLDKNILV 355

Query: 280 --STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                S + F   RF   L NPP+    +  + A       G + R+        DG   
Sbjct: 356 RDFFSSTNHFPSIRFTAALGNPPWKPINDVSEYA-------GSIQRYAV------DGDEA 402

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--- 394
               +   L+     GG  A+V+ S    +  A +  +     L +   ++AIV L    
Sbjct: 403 AEQIVWQLLQSYLMPGGMLAMVMPSKSFASPSAKTFATS----LGQTFHVKAIVNLSHWR 458

Query: 395 TDLFFRTNIATYLWILSN 412
             LF        L  ++N
Sbjct: 459 RHLFANAVQPAALLFVAN 476


>gi|310831373|ref|YP_003970016.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386557|gb|ADO67417.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 817

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 114/362 (31%), Gaps = 28/362 (7%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK---AIFEDFDFSSTIARL 127
           ++++     +   ++  L      N   ++   I     N +    + +D DF +     
Sbjct: 107 NYLECLKIDYMIKNKKILIKSKDKNEGKSILEKIGDLLSNHRTTSRVVKDIDFIN----C 162

Query: 128 EKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +K  +L  + ++ +             ++   YE  +  +     +   +F T R ++ +
Sbjct: 163 KKTNILISLIEDINEFCTKYHIFEYSDIIGIAYEFWMNEYKGGSGKELGNFFTERKLMRM 222

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+    + +   +     T+ D  CGT GF       + D    +     +  +G E
Sbjct: 223 CFELI--DKEDIDNLNINKNSTIGDEFCGTFGFPLYFKQFLKDKYKINIKNKNI--YGVE 278

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG--KK 304
            E      C   ML     +    D   N+ +G +   ++         + N PFG   K
Sbjct: 279 FED---RACRMAML----NAMFSLDNIDNVTRGDSFITNVSP--HLDISVHNVPFGSRMK 329

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           ++  K+  E+   N         + K        L       +    G      ++    
Sbjct: 330 YKHVKEHYEEYQINHSDIPNFDEIIKSKANQDATLSSQMVIYKTNKIG----ICIIKDGQ 385

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
              G         R+   ++  ++ I+ +P+  F  T   T          +    +   
Sbjct: 386 EATGT-TKELLAYRKHFCDSVNLKKILKIPSGAFSSTGTKTLCLYFVKDGNKTENLQFLE 444

Query: 425 IN 426
           ++
Sbjct: 445 LD 446


>gi|15893273|ref|NP_360987.1| putative type I restriction enzyme M subunit [Rickettsia conorii
           str. Malish 7]
 gi|15620494|gb|AAL03888.1| type I restriction enzyme M subunit-like protein [Rickettsia
           conorii str. Malish 7]
          Length = 131

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            PF +   K      K      +          ++G    ++H    L+     GGR A+
Sbjct: 1   MPFSQTITKKTSKNGKTITENHITSLFNNGIAKNNGDAACVLHCLQNLK----EGGRMAL 56

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW-ILSNRKTE 416
           V+    LF     +    +R++LL    ++ +++LP   F   T + T +   +   K  
Sbjct: 57  VVPEGFLFRKDTAA----VRQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFIDVHKPN 112

Query: 417 ERR 419
            ++
Sbjct: 113 NQK 115


>gi|325282540|ref|YP_004255081.1| adenine specific DNA methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324314349|gb|ADY25464.1| adenine specific DNA methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 891

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 111/392 (28%), Gaps = 55/392 (14%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE 101
             L P R A+ E  L    +    E F +           +S   L          N   
Sbjct: 216 SELAPLRKALSE-ALDLNFTGEQGERFFRATLVQTLWYGLFSGWVLHTEKAPEQPFNWRM 274

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIY 159
           +         + +F      S    L    LL +       + L           +   Y
Sbjct: 275 AAWELHLPVMQGLFSQLANPSAQRSLNLTDLLDRTAATLERVNLGAFSSRFQGDAVQYFY 334

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPTCGT 216
           E  +  +  E+ +    + TP DVV      +   L  D  L          + DP  GT
Sbjct: 335 EPFLAAYDPELRKQFGVWYTPADVVEYMVERVDQSLREDLGLSLGLADPSVYVLDPATGT 394

Query: 217 GGFLTDAMNHVADC-----------GSHHKIPPILVPHGQELEPETHAVCVAGM------ 259
           G +LT A+  +                  K        G E+ P  + +    M      
Sbjct: 395 GSYLTAALGRIERTLRAQPDWDDASADELKKAATQRLFGFEIMPAPYVIAHMRMGQRLAR 454

Query: 260 -----------------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
                             +    S P R     +Q     ++ +   +     L NPP+ 
Sbjct: 455 SGAALEGQERAAIYLTNALTNWHSAPPRLDMPELQAEQDAAQHVKQNQPILVILGNPPYS 514

Query: 303 KKWEKDKDA---VEKEHKNGELGRFGPGLPKISDGSMLFLMHL-ANKLELPPNGGGRAAI 358
                 +D    +  E+K G +  +G    K  +   L++      + ++   G G    
Sbjct: 515 AFVGTSQDEEGGLIDEYKQGLVSEWG---IKKFNLDDLYVRFFRVAERKIGQTGRGIVCF 571

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           +   S L    +      +RR LL    + +I
Sbjct: 572 ISPYSYL----SDPSFVVMRRKLLGEFDLLSI 599


>gi|53802480|ref|YP_112803.1| hypothetical protein MCA0269 [Methylococcus capsulatus str. Bath]
 gi|53756241|gb|AAU90532.1| conserved domain protein [Methylococcus capsulatus str. Bath]
          Length = 149

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
          MTE       L N +   A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1  MTE--QEQKQLGNTLRGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGTDY 58

Query: 60 LAFGGSNI 67
                + 
Sbjct: 59 PKLAADDR 66


>gi|88706060|ref|ZP_01103768.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71]
 gi|88699774|gb|EAQ96885.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71]
          Length = 115

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           +  +LA  IW  A+ L GDF+ + +G+VILPF +LRRLEC LE ++  V  +     
Sbjct: 11 QNDNNLAADIWALADLLRGDFRQSQYGRVILPFAILRRLECVLEGSKVNVLAQVDENK 68


>gi|331000342|ref|ZP_08324023.1| hypothetical protein HMPREF9439_01665 [Parasutterella
           excrementihominis YIT 11859]
 gi|329572138|gb|EGG53803.1| hypothetical protein HMPREF9439_01665 [Parasutterella
           excrementihominis YIT 11859]
          Length = 156

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IWK A ++ G  +  ++   IL     + L       +        +     
Sbjct: 2   NKQELAAQIWKGANEMRGKIEAGNYKDFILGLLFYKFLSEN--EVKYLKDNLGASKEDLA 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            +      +    +Y   E   S++   +   N+ S  A+ S+      E+  FS+
Sbjct: 60  AEDVKTYLIDNLGYYIPEENLFSSMMGKDKGMNIGSLSAALSNFNLVTLENPLFSN 115


>gi|329913606|ref|ZP_08275980.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
 gi|327545303|gb|EGF30547.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
          Length = 221

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
             GGRAA+++    LF   +     E+RR ++E   ++A+++LP+ +F     ++T + +
Sbjct: 23  KPGGRAAVIVPDGVLF--GSSKAHKELRRMIVEEQKLDAVISLPSGVFKPYAGVSTAILL 80

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +        G  + +   D+     +   KR+ +  + 
Sbjct: 81  FTK----TNSGGTENVWFYDMKQDGWSLDDKRQPLLSEN 115


>gi|259501496|ref|ZP_05744398.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302191530|ref|ZP_07267784.1| putative modification methylase [Lactobacillus iners AB-1]
 gi|259167014|gb|EEW51509.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
          Length = 333

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 115/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +  +    L   S   +LF+  + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFDNCQ----LSGHSFAHILFIEQII 235

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            KL+      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 236 KKLKPS----GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|167465360|ref|ZP_02330449.1| putative methylase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 388

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 76/247 (30%), Gaps = 51/247 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 F TP  V      ++ +  +            + +P+ G+G FL          
Sbjct: 33  GFNGGAFFTPTHVARFMAGVIRNLYEGF-----PENMRVLEPSVGSGVFL---------- 77

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                +PP       EL+  +  V             PR D+           +D     
Sbjct: 78  ---EHLPPDAEITALELDETSARVTQL--------IYPRADVILGNAL-DHDRRDY---- 121

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+G       + VE E +   L +        S+ + + L           
Sbjct: 122 -YDLVIGNPPYG-------ETVETEKEYATLSKRKGIYRGKSEAAFIELA------IKAA 167

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
             GG  A +L     F   A     ++R+ + E     A + LP + F   RT I T + 
Sbjct: 168 RPGGYIAFILPMGISFASHA----KKVRKLMYETCWQVATIMLPGETFMHTRTTIPTQII 223

Query: 409 ILSNRKT 415
           IL     
Sbjct: 224 ILRKAPP 230


>gi|295093442|emb|CBK82533.1| Type I restriction-modification system methyltransferase subunit
           [Coprococcus sp. ART55/1]
          Length = 710

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 103/328 (31%), Gaps = 55/328 (16%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            + V+  +Y  +     +   + A  + TP  VV    + +     +   E     + L+
Sbjct: 184 GEDVLGLLYMSIRD---AGSRKAAGSYYTPTKVVRTLISDVTGDMGSRISEG---GKRLF 237

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL------ 264
           DP CGTG FL    + +               +  +++  +  +    + + RL      
Sbjct: 238 DPCCGTGNFLIQLPDDIELNN----------IYACDIDELSVQLARFNLALGRLSGRRHV 287

Query: 265 ----------ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDA 311
                     E   RRD     +  S    D   L     +   + NPP+G  ++++   
Sbjct: 288 NVDEAIRTIYEHIERRDFISEYRNDSECGGDDKKLLADPGYDIIIGNPPWGYTFDRETRT 347

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           + ++      GR         + S +F+      L       G  A VL  + L      
Sbjct: 348 LLRKAYRTAAGRGV-------ESSDVFVECALKLL----TDEGVLAFVLPEALL----DV 392

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDL 430
                IR  + E+  +  +  L  D F+     + +  L         +G V   +  + 
Sbjct: 393 HNHKTIREIIAESANVSRVSFL-GDAFYGVQCPSLVLQLEKSSDPGHSKGAVIERDGREF 451

Query: 431 WTSIRNEGKKRRI---INDDQRRQILDI 455
                           + DD+ R +  I
Sbjct: 452 VVGTDRPLGSENFMLRLTDDEYRLLCRI 479


>gi|149919925|ref|ZP_01908400.1| type II restriction-modification enzyme [Plesiocystis pacifica
           SIR-1]
 gi|149819198|gb|EDM78632.1| type II restriction-modification enzyme [Plesiocystis pacifica
           SIR-1]
          Length = 777

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 96/303 (31%), Gaps = 58/303 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  ++E  + R        A  F TP  +        L        +       + DP
Sbjct: 125 DTLGQLFEGGLVR---RARRDAGVFFTPASLADFVVQETLG-----RSQRDPGSLRVLDP 176

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G FL  A   V       K   +    G +   E  AV    + +   ++  R + 
Sbjct: 177 ACGGGAFLLAAHRAVRRATG--KEGALANFFGVDKNGEALAVARRALWLEHAKAQGRLEP 234

Query: 273 SK-----NIQQGSTLSK---------DLFTGK-------------RFHYCLSNPPFGKKW 305
           +      N++QG ++           D  TG+             RF   L NPPF    
Sbjct: 235 APAQLFTNLRQGDSVVDDPQVDPWAFDWSTGRRVGASAGASTWPARFDLILGNPPF---- 290

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 V  E        +         G+ LF+  +   LEL    GGR   V+S+  L
Sbjct: 291 ------VRHEQLGPFKAHWRERFSTYEGGADLFVYFIERGLELLAP-GGRLGFVVSNKWL 343

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVA---LPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             G A    + +R  L  +  +E +V     P  +F   +    +  +           V
Sbjct: 344 RGGYA----ARLRERLARDCTVELLVDHGHAP--VFAGADAFPCVLCVRKGPPAP-THAV 396

Query: 423 QLI 425
           Q+I
Sbjct: 397 QVI 399


>gi|254235709|ref|ZP_04929032.1| hypothetical protein PACG_01646 [Pseudomonas aeruginosa C3719]
 gi|126167640|gb|EAZ53151.1| hypothetical protein PACG_01646 [Pseudomonas aeruginosa C3719]
          Length = 603

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 93/264 (35%), Gaps = 35/264 (13%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAMNH 226
               +    F TP        +L     D L ++       +  DP CG   FL      
Sbjct: 114 EGYRKKLAMFFTP-------VSLTEGLLDDLAEQGTDFGSFSFMDPACGGAAFLAPIALR 166

Query: 227 VADCGSHHKIPPIL-------VPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQ 277
           +    +   +PPI          +G +L+     +      M +           + NI 
Sbjct: 167 MRKALATKGLPPIKLLKHVEKHLYGTDLDKSLCELSKHFLCMALHAEIQKTSYIPTFNIH 226

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             ++L++   +  R    + NPP+ K   ++ + +           +   +    +   L
Sbjct: 227 HANSLTELSASLGRVDVVVCNPPYRKMTAEELEPL--------RATYTDVIEAQPNLYCL 278

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPT 395
           F+      L      GGRAA+V  +S L    +G   S +R++L+ +  +E   +V+   
Sbjct: 279 FITLCVRLLR----NGGRAALVTPTSFL----SGQYFSRLRKFLMRHTDVEHIGMVSDRK 330

Query: 396 DLFFRTNIATYLWILSNRKTEERR 419
            +F      T + IL  R  E+R 
Sbjct: 331 GVFIDVEQETAMTILRRRAEEDRT 354


>gi|219668644|ref|YP_002459079.1| N-6 DNA methylase [Desulfitobacterium hafniense DCB-2]
 gi|219538904|gb|ACL20643.1| N-6 DNA methylase [Desulfitobacterium hafniense DCB-2]
          Length = 673

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 111/357 (31%), Gaps = 53/357 (14%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE---LHPDTVPDRVMSNIYEH----LI 163
            +     F   S       + L+  + +N S +E   LH  T     M  I E     L+
Sbjct: 135 PRHCLLSFYLQSKQLFGSYSMLIDDLLENVSDLEGQILHLKTALSLPMDYIEEQDLLGLL 194

Query: 164 RRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL--YDPTCGTGGF 219
                   E      + TP  VV           D++    P +   +   DP CGTG F
Sbjct: 195 YMSLQNAGERKSRGVYYTPLAVVK----------DSVDHLEPFLHEKIRLLDPCCGTGNF 244

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L     ++ +             +G ++ P + ++    M +   ++D    L KN    
Sbjct: 245 LMHVYKYIKNLDG---------IYGYDISPLSVSLTRINMAL-ISKTDNLEVLYKNFLCK 294

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L++   +   F   + NPP+G  ++ +     K                    ++   
Sbjct: 295 DPLAR--KSNLEFDVIIGNPPWGFNYDAEARQALK-----------KAYVSARKKTVESF 341

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                        GG  + VL  S L           +R +L+++  I+  +    D F 
Sbjct: 342 AVFTEYALKTAIDGGIVSFVLPQSLL----NVKIHQPLRDYLVDHAKIKR-IRYWDDAFD 396

Query: 400 RTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQI 452
                     L  +    E +G   + N+     +I  E         + DD+   I
Sbjct: 397 GVQCPAMALTLQKKHQGFEIKGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEISLI 453


>gi|167039870|ref|YP_001662855.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514]
 gi|300915312|ref|ZP_07132626.1| type I restriction-modification system M subunit
          [Thermoanaerobacter sp. X561]
 gi|166854110|gb|ABY92519.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514]
 gi|300888588|gb|EFK83736.1| type I restriction-modification system M subunit
          [Thermoanaerobacter sp. X561]
          Length = 69

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 5  TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            +  S+ NFIW  A+D L   +    +  VILP T++RRL+  LE T+ AV    + +
Sbjct: 3  NQTYNSIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEETKPAVLTTKMTY 61


>gi|315037968|ref|YP_004031536.1| Adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276101|gb|ADQ58741.1| Adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1112]
          Length = 333

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 104/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      K  +  S     +  D +  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLEQGKIKVENGAPDEKTVEELSKKYQAIDYDHISQKDKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP  +  +   L+        K        + DP  GTG  L   
Sbjct: 83  LKAVNDDGLDANQMPTPPAISTVVAMLM-------HKLLKDEKMEIVDPAVGTGNLLFSI 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +  ++ +     +          
Sbjct: 136 ISQLKALNH---SKDNYQLVGIDNDEEMLNLTDVAAHLNDIDIELYCQDALMPWMCP--- 189

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         +++  KN E           S   +L +  + 
Sbjct: 190 -------NADAIVSDLPIGYY------PIDENAKNFENH----AKKGHSFAHLLLIEQII 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+ +S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 KNLK----SDGYAFLVVPNSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFRNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N  +E +  +V L
Sbjct: 285 QKSILVFQNHGSEAKPSEVLL 305


>gi|46199730|ref|YP_005397.1| hypothetical protein TTC1428 [Thermus thermophilus HB27]
 gi|46197356|gb|AAS81770.1| hypothetical protein TT_C1428 [Thermus thermophilus HB27]
          Length = 508

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A+L +++W  A  + G      F   I P   L RL    E     + E+Y     +   
Sbjct: 6   ATLESWLWNAACAIRGPVGAPKFKDHIPPLAFLERLSDVFEEELYRLAEEYGNREVALSL 65

Query: 69  LESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   + V          Y    +  TN R   +      +D  +      +  S +   
Sbjct: 66  VEERKEGVIAQGRGLVRFYIPEEVRWTNIRKQDKGLSQYLTDAVRK-----NKHSKMVMP 120

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            +A L  ++ ++   +    +     +  N  +H +R+    V   A
Sbjct: 121 VEAELRKRVIEHLRELGFKVENGELALEGNSDKHFLRQLHDAVRRLA 167


>gi|293189377|ref|ZP_06608100.1| putative modification enzyme transmembrane protein [Actinomyces
           odontolyticus F0309]
 gi|292821840|gb|EFF80776.1| putative modification enzyme transmembrane protein [Actinomyces
           odontolyticus F0309]
          Length = 151

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 14/155 (9%)

Query: 30  DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
            +   +L    L   E   E  R+AV     +   +N+        A    Y   E  LS
Sbjct: 2   QYRDPVLGLVFLAYAEDRFESVRAAVDAGATSRNPANVAD----YRAKSVLYVPDESRLS 57

Query: 90  TLGS----TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
            L +     +     ++ I +  +       + +    + R  +      + +       
Sbjct: 58  YLVNLPEGKDVGKATDAAIKAIEET------NLELKDVLPRGSQKLERSTLIELLRLFAP 111

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            P  +       IYE  +  F ++  +G   + TP
Sbjct: 112 LPKQLEGDAFGFIYEDFLSNFAAQEGKGGGKYFTP 146


>gi|325913066|ref|ZP_08175437.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
 gi|325477622|gb|EGC80763.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
          Length = 333

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 112/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N     R  KV 
Sbjct: 288 PKSILVLQNHGQNMRLRKVL 307


>gi|311898038|dbj|BAJ30446.1| hypothetical protein KSE_46650 [Kitasatospora setae KM-6054]
          Length = 688

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 82/226 (36%), Gaps = 31/226 (13%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP CGTGG L  A              P     GQE +P    V +   L     +D 
Sbjct: 208 VLDPACGTGGVLLAA--------------PGTERLGQEGDPALAGVALL-RLALAAPADA 252

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPG 327
              L  +++ G  L  D F G+     L  PP+  + W  D+   +        GR  P 
Sbjct: 253 PGPLPLDVRPGDALRADAFPGRAADAVLCRPPYNERDWGHDQLQYDARWP----GRLVP- 307

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                +  + +++H           GG A ++L  +             +R  L+ +  +
Sbjct: 308 --PRGESELAWVLHCLAH----TRPGGTAVLLLPPTVASRRAG----RRVRAELVRSGAL 357

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            A+ ALP        +  ++W+L   +  +    V L++AT+    
Sbjct: 358 RAVAALPAGAAPPYGVPLHVWVLRGPEPGDEFRHVLLLDATEDGAD 403


>gi|332664158|ref|YP_004446946.1| hypothetical protein Halhy_2190 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332972|gb|AEE50073.1| hypothetical protein Halhy_2190 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 974

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 132/425 (31%), Gaps = 59/425 (13%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
             +I+   + + LE   +   + + E    F     D + F  +    + N     L+  
Sbjct: 191 KLLIIGVLV-KYLEDKEDKNGTNLLEISRDFYQQFPDCKQFTDILRNGYINAFLEELNIK 249

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            +    +              +      F + I   +          NF  IEL      
Sbjct: 250 FNGKVFDLKPEEKQELGKANLSYVAAV-FDADIEGHQYVLWKLYAF-NFLPIEL------ 301

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              +S IYE  +++             TP  +V+L     + P D   +        + D
Sbjct: 302 ---ISGIYEAFLKK-------EKGVVYTPPYLVNLLIDECM-PLDKAEEMFSTGTFKVLD 350

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV----------------PHGQELEPETHAVC 255
           P CG+G FL  A+  +    +                           G ++E     + 
Sbjct: 351 PACGSGIFLVAALKRMVQWQAILNYKATESIDYPNIETIKRIVRDNIFGVDIEEGATFIS 410

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSK-----------DLFTGKRFHYCLSNPPFGKK 304
           +  + I   +      +   ++      +           D    + F   + NPPF   
Sbjct: 411 IFSLCIAICDKLSPMQIWNELRFDDLGEENIVTDNFFGVFDQLKAQGFDLVIGNPPFNPP 470

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               K      + +     F      +  G  L L  L   +EL  +GG    I+ ++S 
Sbjct: 471 SGFSKLG----YFDLIQKNFSITPNLLISGGQLALFFLDKAVELRRSGGKICFILPANSW 526

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA---LPTDLFFRTNIAT-YLWILSNRKTEERRG 420
           L+N +A       R + +EN  +E I     L   LF  +        I ++ + +ER G
Sbjct: 527 LYNSKATP----YRTFFMENYRVEKIFDFTHLSDRLFHGSATPAVCATIATDLQPKERLG 582

Query: 421 KVQLI 425
           KV  I
Sbjct: 583 KVLHI 587


>gi|309808666|ref|ZP_07702558.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168140|gb|EFO70266.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 333

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 112/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N     R  KV 
Sbjct: 288 PKSILVLQNHGQNMRLRKVL 307


>gi|330904327|gb|EGH34899.1| hypothetical protein PSYJA_40355 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 67

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 19 AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
          A+ L G    ++F + I     L+R     E     V  + +  G S    E+FV     
Sbjct: 1  ADILRGKMDASEFKEYIFGMLFLKRCSDVFEERYEEVVAQEIRAGKS--QAEAFVSAENP 58

Query: 79 SFY 81
           +Y
Sbjct: 59 RWY 61


>gi|331669721|ref|ZP_08370567.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
 gi|331063389|gb|EGI35302.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
          Length = 203

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILS 411
           GGR+A ++    LF   +      +R+ L+E++ +EA++ LP+ +F     +AT + I +
Sbjct: 5   GGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFT 62

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
                   G+   +   DL     +   KR  I D+    +L
Sbjct: 63  KG------GQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLL 98


>gi|34581060|ref|ZP_00142540.1| hypothetical type I restriction enzyme M subunit [Rickettsia
           sibirica 246]
 gi|28262445|gb|EAA25949.1| hypothetical type I restriction enzyme M subunit [Rickettsia
           sibirica 246]
          Length = 131

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            PF +   K      K      +          ++G    ++H    L+     GGR A+
Sbjct: 1   MPFSQIITKKTSKNGKTITENHITSLFNNGIAKNNGDAACVLHCLQNLK----EGGRMAL 56

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW-ILSNRKTE 416
           V+    LF     +    +R++LL    ++ +++LP   F   T + T +   +   K  
Sbjct: 57  VVPEGFLFRKDTAA----VRQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFIDVHKPN 112

Query: 417 ERR 419
            ++
Sbjct: 113 NQK 115


>gi|315653343|ref|ZP_07906265.1| DNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|315489268|gb|EFU78908.1| DNA methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 333

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 114/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++   N  G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIK-NLNPSGYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|325956439|ref|YP_004291851.1| adenine-specific DNA methylase [Lactobacillus acidophilus 30SC]
 gi|325333004|gb|ADZ06912.1| Adenine-specific DNA methylase [Lactobacillus acidophilus 30SC]
 gi|327183256|gb|AEA31703.1| adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 333

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 103/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      K  +  S     +  D +  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLEQGKIKVENGAPDEKTVEELSKKYQAIDYDHISQKDKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP  +  +   L+        K        + DP  GTG  L   
Sbjct: 83  LKAVNDDGLDANQMPTPPAISTVVAMLM-------HKLLKDEEMEIVDPAVGTGNMLFSI 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +  ++ +     +          
Sbjct: 136 ISQLKALNH---SKDNYQLVGIDNDEEMLNLTDVAAHLNDIDIELYCQDALMPWMCP--- 189

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         +++  KN E           S   +L +  + 
Sbjct: 190 -------NADAIVSDLPIGYY------PIDENAKNFENH----AKKGHSFAHLLLIEQII 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 KNLK----SDGYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFRNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N  +E +  +V L
Sbjct: 285 QKSILVFQNHGSEAKPSEVLL 305


>gi|56707657|ref|YP_169553.1| hypothetical protein FTT_0522 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670128|ref|YP_666685.1| hypothetical protein FTF0522 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604149|emb|CAG45155.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320461|emb|CAL08538.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
          Length = 325

 Score = 65.2 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 60/196 (30%), Gaps = 37/196 (18%)

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
              V    M++           +        L+ +     RF   L+NPPFG    KD  
Sbjct: 1   MARVSKMNMIMHG------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNS 54

Query: 311 AVEKEHKN-------------------------GELGRFGPGLPKISDGSMLFLMHLANK 345
            V +E K                             G+    L K  + S+   +    +
Sbjct: 55  KVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISVATEVLFVER 114

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--I 403
                  GGR  IVL    L      S   + R +      I  IV+LP DLF  +   +
Sbjct: 115 CLDLLKAGGRMGIVLPEGVL----NSSNLQKAREYFESRAKILLIVSLPQDLFVSSGATV 170

Query: 404 ATYLWILSNRKTEERR 419
            T L  L     EE+ 
Sbjct: 171 KTSLVFLKKFTVEEQE 186


>gi|322378562|ref|ZP_08053005.1| type II restriction modification enzyme methyltransferase
           [Helicobacter suis HS1]
 gi|322380000|ref|ZP_08054267.1| type IIS restriction enzyme [Helicobacter suis HS5]
 gi|321147573|gb|EFX42206.1| type IIS restriction enzyme [Helicobacter suis HS5]
 gi|321149011|gb|EFX43468.1| type II restriction modification enzyme methyltransferase
           [Helicobacter suis HS1]
          Length = 677

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 129/416 (31%), Gaps = 75/416 (18%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A+  S + LE          ++  E+        N +N     I+      + +F     
Sbjct: 233 AYKTSPLKLEDLKNEQDKDSHDGHEFLKKIKAFLNAKNLPPEKISIVVHELQKVFIHSKL 292

Query: 121 SSTIARLEKAGLLY-------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
             T     K   +        +  +      L        +   ++  L +      +E 
Sbjct: 293 WQTNTYTRKNIAISPLKTIYGRFLEGV--FPLVKKLSQADIAGKLFNVLTKWLEVPDNEK 350

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ 227
            +  +TPR VV L   L     D+           ++D   G+G FL  +MN +      
Sbjct: 351 NDVVLTPRIVVDLMVNLAEVNQDSF----------VWDYATGSGAFLVSSMNKMIQDCTE 400

Query: 228 -----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP--RRDLSKNIQQGS 280
                 +              G E   + + + V  ML+    S     +D   + ++G 
Sbjct: 401 KILNQEEREKKIAHIRAYQLLGIEKRTDIYLLGVLNMLLLGDGSANLLHKDSLVDFKEGV 460

Query: 281 TLSKDLFTGKRFH--YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              +  + GK F+    L NPP+  K                    G G   +       
Sbjct: 461 KYEQGDYKGKLFNANVFLLNPPYSAK--------------------GKGFVFVDRA---- 496

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                    L     GRA +++  +               + +L+ + + A + +P DLF
Sbjct: 497 ---------LERMTSGRAVVIIQENAGSGNGLPYT-----KDILKKNTLLASIKMPLDLF 542

Query: 399 FR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS--IRNEGKKRRIINDDQRRQ 451
              +++ T +++    K   +   V+ IN ++       R + K    + D  R +
Sbjct: 543 VGKSSVQTAIYVFEVGKPHNKEHMVKFINFSNDGYMRAARKKAKASVNLRDVDRAK 598


>gi|62259857|gb|AAX77871.1| unknown protein [synthetic construct]
          Length = 360

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 61/197 (30%), Gaps = 37/197 (18%)

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           E   V    M++           +        L+ +     RF   L+NPPFG    KD 
Sbjct: 26  EMARVSKMNMIMHG------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDN 79

Query: 310 DAVEKEHKN-------------------------GELGRFGPGLPKISDGSMLFLMHLAN 344
             V +E K                             G+    L K  + S+   +    
Sbjct: 80  SKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISVATEVLFVE 139

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN-- 402
           +       GGR  IVL    L      S   + R +      I  IV+LP DLF  +   
Sbjct: 140 RCLDLLKAGGRMGIVLPEGVL----NSSNLQKAREYFESRAKILLIVSLPQDLFVSSGAT 195

Query: 403 IATYLWILSNRKTEERR 419
           + T L  L     EE+ 
Sbjct: 196 VKTSLVFLKKFTVEEQE 212


>gi|312875573|ref|ZP_07735574.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
 gi|311088827|gb|EFQ47270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
          Length = 417

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           EK   L  I    + I        D     + YE+LI  + S   +   +F TP+ V  L
Sbjct: 14  EKNKRLADILTGIAEINFGEFQKNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKL 73

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
              +++D   ++ K         YDP   TG 
Sbjct: 74  LARIVMDGKTSINKA--------YDPPYNTGN 97


>gi|312872395|ref|ZP_07732464.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311091977|gb|EFQ50352.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 333

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 114/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++   N  G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIK-NLNPSGYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|329919943|ref|ZP_08276845.1| hypothetical protein HMPREF9210_0652 [Lactobacillus iners SPIN
           1401G]
 gi|328936830|gb|EGG33266.1| hypothetical protein HMPREF9210_0652 [Lactobacillus iners SPIN
           1401G]
          Length = 333

 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 113/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|58337054|ref|YP_193639.1| modification methylase [Lactobacillus acidophilus NCFM]
 gi|227903618|ref|ZP_04021423.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus acidophilus ATCC 4796]
 gi|58254371|gb|AAV42608.1| putative modification methylase [Lactobacillus acidophilus NCFM]
 gi|227868505|gb|EEJ75926.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus acidophilus ATCC 4796]
          Length = 333

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 106/321 (33%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      K     S     L+ D++  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLEQGKIKVENGAPDEKTVAELSKKYQALNYDSISQKEKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DPT GTG  L   
Sbjct: 83  LKAINDDGREVNQMPTPPAISTVVAMLM-------HKLLSNKKMEIVDPTVGTGILLFSV 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +  ++ +     +          
Sbjct: 136 ISQLKALNH---SKDQYKLVGIDNDEEMLNLADVAAHLNDIDIELYCQDALMPWMCP--- 189

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         +++  KN E  R   G    S   +L +  + 
Sbjct: 190 -------NADAIVSDLPVGYY------PIDENAKNFE-NRAEKGH---SFAHLLLIEQII 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+     GG + +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 KNLKP----GGYSFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   + +  +V L
Sbjct: 285 QKSVLVFQNHGGDAKASEVLL 305


>gi|312871486|ref|ZP_07731580.1| N-6 DNA Methylase [Lactobacillus iners LEAF 3008A-a]
 gi|311093006|gb|EFQ51356.1| N-6 DNA Methylase [Lactobacillus iners LEAF 3008A-a]
          Length = 333

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 113/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|124008031|ref|ZP_01692730.1| hypothetical protein M23134_01573 [Microscilla marina ATCC 23134]
 gi|123986445|gb|EAY26251.1| hypothetical protein M23134_01573 [Microscilla marina ATCC 23134]
          Length = 431

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 11/192 (5%)

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI---RRWLLENDLIEAIVALPTDL 397
           H      LP     R + +++S+ +    +   E E+   R  LL++ ++ AIVALP++ 
Sbjct: 246 HSLVSELLPYIKQARMSALVTSAAILYKGSPRNEYEVANLRIELLKSGMLRAIVALPSNQ 305

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            F + I   + +     T +R  +V +INA      I     + + +  +   +I++   
Sbjct: 306 KFYSRIKMVMLVFD---TSQRFDEVVVINA----EHINQAKTRYKTLETEDIEKIVNTIE 358

Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R+  + FS++          + +     +     K  L  LE      +      +   
Sbjct: 359 QRKEVEFFSKVYKNEQLYDAHMGMNIAALVPAKATKEELKSLEELAQEEQTLKTRLAELR 418

Query: 517 DILKPMMQQIYP 528
             L   +  +  
Sbjct: 419 GTLDNNIGDLLD 430


>gi|309806208|ref|ZP_07700224.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|312874421|ref|ZP_07734451.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d]
 gi|308167427|gb|EFO69590.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|311090033|gb|EFQ48447.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d]
          Length = 333

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 114/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLPIDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++   N  G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIK-NLNPSGYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|309805400|ref|ZP_07699448.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165285|gb|EFO67520.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
          Length = 333

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 112/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    A    ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMILSGKDA----ADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|313667087|gb|ADR72986.1| M1.BsmFI [Geobacillus stearothermophilus]
          Length = 560

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 38/267 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +      TP+ V  L  +L ++             RT+ DP  G G FL       
Sbjct: 16  ENKKDMLGQVFTPQGVADLMVSLGMNTKP----------RTILDPCFGEGVFLESIQKRK 65

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G+H KI       G E++P  +            E   R+  +  +           
Sbjct: 66  EYVGNHTKII------GVEIDPVLY------------ERVQRKFPNFELYNMDFFDFQGV 107

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                   + NPP+ ++    +      +K+  + R       IS  S L++  L     
Sbjct: 108 ----VDCVIMNPPYIRQELLREKMPRFLNKSDIMARLPLLQYPISSRSNLYVYFLIKAWS 163

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           +    G   AI+ ++               +++LL+N  I+AI+    D+F   ++ + +
Sbjct: 164 ILSEKGSIIAIIPNTWMAAEYGNS-----FKKFLLQNFWIKAIIQFNKDVFPDADVESCI 218

Query: 408 WILSNRKTEERRGK-VQLINATDLWTS 433
             LS  K      K   LIN    ++ 
Sbjct: 219 LYLSKEKDAGLNMKNTYLINIQKPFSK 245


>gi|291522490|emb|CBK80783.1| Type I restriction-modification system methyltransferase subunit
           [Coprococcus catus GD/7]
          Length = 412

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 82/291 (28%), Gaps = 63/291 (21%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
             +    I+          +S  Y   +  + S         +TP  +      ++    
Sbjct: 97  FLQQLQKIKSQLKETNMDAISLFYHVFLS-YSSGGRNSLGIVLTPEHIADFMAKVI---- 151

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                 +     ++ D  CGTG  L +A +H    G         + +G E +   + + 
Sbjct: 152 ------NVQPGDSILDICCGTGA-LLNAASHYNGGG---------MLYGCERDEGVYDMA 195

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
                   +    R +  +         +           L NPP+  K   D D +E  
Sbjct: 196 S-------ISQGVRYENMRLFHSDCYKLRSSNPRLMADKGLLNPPYAMK---DHDELEFL 245

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            +  ++ R                              G AA ++ S   +         
Sbjct: 246 LEELKMIR----------------------------PHGLAAAIVPSKTAYVMSEP--YI 275

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIA--TYLWILSNRKTEERRGKVQL 424
             RR LLE   ++A+ ++P D+F        T + +       +   K   
Sbjct: 276 TRRRQLLEEHTLKAVFSMPDDIFNGNGATAVTCIMVFEAHVPHDPSEKTFF 326


>gi|309803934|ref|ZP_07698018.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d]
 gi|309809543|ref|ZP_07703401.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308164029|gb|EFO66292.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d]
 gi|308170215|gb|EFO72250.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 333

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 113/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N   + +  KV 
Sbjct: 288 PKSILVLQNHGQKMQLRKVL 307


>gi|166363559|ref|YP_001655832.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166085932|dbj|BAG00640.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 998

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 105/377 (27%), Gaps = 38/377 (10%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                R    E         I LE   ++          +      S   R N      +
Sbjct: 181 NFVTARDNFLEICRKSINPEISLEDVREMIIQHILTEDIFINIFNESQFHREN------N 234

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +   + + E F   +T          Y      +   ++      + +  IYE+  + +
Sbjct: 235 IARELQGVIETFFTGNTKRNTLGTIERYYAVIRRTAANIYNHHEKQKFLKAIYENFYKAY 294

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225
             + ++      TP ++V      +       F K        + DP  GTG F+T+ + 
Sbjct: 295 NPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFRKLLADPGVEILDPATGTGTFITELIE 354

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++      +K    +  H  E+    + +    +     +     +  ++I    TL   
Sbjct: 355 YLPKDKLRYKYKHEM--HCNEVAILPYYIANLNIEFTYKQKMGEYEEFEHICFVDTLDHA 412

Query: 286 LFTGKRFH---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            F  K+                         + NPP+    + + D  +         R 
Sbjct: 413 AFHLKQMDLFAMSVENTQRIQNQNDRNISVIIGNPPYNANQQNENDNNKNRKYPAIDKRI 472

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                + S      L  + ++            G  A + +SS +            R+ 
Sbjct: 473 KDTYIEESTAQKTKLYDMYSRFFRWATDRLGENGIIAFITNSSFIDARTFDG----FRKV 528

Query: 381 LLENDLIEAIVALPTDL 397
           +        I+ L  ++
Sbjct: 529 VENEFSEIYIIDLGGNV 545


>gi|312875124|ref|ZP_07735139.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|325911894|ref|ZP_08174298.1| N-6 DNA Methylase [Lactobacillus iners UPII 143-D]
 gi|311089330|gb|EFQ47759.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|325476400|gb|EGC79562.1| N-6 DNA Methylase [Lactobacillus iners UPII 143-D]
          Length = 333

 Score = 64.4 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 112/320 (35%), Gaps = 42/320 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           +F++     F+  +      ++E      KI +  +     L  + +   V S+++  L 
Sbjct: 28  TFTEALVETFD--NLEHKKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLT 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     +  +    TPR ++    ALL        K  P   + + DP  G+G  L   
Sbjct: 86  LKAADVDNFNSTQLPTPR-ILATIVALL------WSKIVPQTAKEVIDPAIGSGTLLFSL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +             V  G + +P    +      + +L  D  R  +          
Sbjct: 139 IDQLRFLNH---SKNSFVLTGIDNDPAMLDLADVSSYLNKLSVDLLRQDAL--------- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +   TGK+    +S+ P G         ++   KN +         ++S  S   ++ + 
Sbjct: 187 QPWLTGKK-DVAVSDVPVGYY------PLDNNAKNFD-------NCQLSGHSFAHILFIE 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G A +++    L    +G   ++   WL +   I A+V LP DLF     
Sbjct: 233 QIIKNLKPS-GYAFLIVPKMIL----SGKEAADFMTWLTKKVNILAVVDLPDDLFANMKY 287

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              + +L N     +  KV 
Sbjct: 288 PKSILVLQNHGQNMQLRKVL 307


>gi|281355399|ref|ZP_06241893.1| DNA binding domain protein, excisionase family [Victivallis
           vadensis ATCC BAA-548]
 gi|281318279|gb|EFB02299.1| DNA binding domain protein, excisionase family [Victivallis
           vadensis ATCC BAA-548]
          Length = 641

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 77/235 (32%), Gaps = 42/235 (17%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               +  +Y+ L R   +     A  F TP +VV   TA L   D            TL 
Sbjct: 176 GSDQLGFLYQALRR---TGSRVQAGSFYTPPEVVRSMTAGLTPHD----------GFTLL 222

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G FL  A     +              G +L+P    +      +  L + P  
Sbjct: 223 DPGCGSGQFLLGAAEAGWEFD---------QLFGIDLDPLALRLAA----LNLLLAFPAV 269

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           D   N++    L  D F  +RF   + NPP+G+              +GEL R       
Sbjct: 270 DALPNLKCADALLTDSFGRRRFDVVIGNPPWGR------------LADGELRRRLNRRYL 317

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                     +   +       GG    +L  + L   R     +EIR  LL   
Sbjct: 318 RKRNFSESFSYFLLRARALAVPGGTIRFLLPEAILNIRR----HAEIRSELLNEC 368


>gi|300726544|ref|ZP_07059989.1| N-6 DNA Methylase family protein [Prevotella bryantii B14]
 gi|299776175|gb|EFI72740.1| N-6 DNA Methylase family protein [Prevotella bryantii B14]
          Length = 360

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 88/269 (32%), Gaps = 63/269 (23%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F S  +  A  F  P +   LA+AL+               + +Y+P  G   F T 
Sbjct: 152 LSKFSS--NHSAGQFTQPVEFAELASALV-----------ESRGKDIYNPFSGLMSFATA 198

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +                 G E +P    + +    +  ++                 
Sbjct: 199 MKEYA-------------SFTGVERDPFIADISIFRTHLAGIQDKASCIPGDVRDW---- 241

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                +   +   +S PP G         V+ E++                         
Sbjct: 242 -----SKISYDIIVSTPPIGVPIS-----VKDENRPIR-----------------SECFC 274

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
               E   N  G     +  S LF+ R      EIR  L E + ++A+++LP +L    T
Sbjct: 275 LKNFESLTNDNGVLFTFVVPSVLFDSRRA---REIRHELTEKNYLDAVISLPANLMRPYT 331

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL 430
           +I+    +L  +K  ++   +++++A++ 
Sbjct: 332 SISLVAVLL--KKGRDKNAPIKMLDASEF 358


>gi|169350786|ref|ZP_02867724.1| hypothetical protein CLOSPI_01559 [Clostridium spiroforme DSM 1552]
 gi|169292649|gb|EDS74782.1| hypothetical protein CLOSPI_01559 [Clostridium spiroforme DSM 1552]
          Length = 167

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 22/144 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M E   S   L + +W  A+ L       ++   +L     + L  +             
Sbjct: 13  MAEAENS-KDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLINDEK 71

Query: 50  -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN--------- 99
             +     E+Y          E   ++     Y        T  +   RNN         
Sbjct: 72  PSSLKEALEEYREALKDESADELMEEIKSACHYVIEPDLTYTYFADAARNNSFNREYLQK 131

Query: 100 LESYIASFSDNAKAIFEDFDFSST 123
             + I   +     +F D D  S 
Sbjct: 132 AFNNIEQSNPLFADLFTDIDLYSN 155


>gi|309704635|emb|CBJ03985.1| putative type I restriction-modification subunit [Escherichia
          coli ETEC H10407]
          Length = 70

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL 48
          +   +A  IW++A  +    +  ++   IL F   + L   L
Sbjct: 2  NKQQIAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQL 43


>gi|38505785|ref|NP_942404.1| type I restriction-modification system M subunit [Synechocystis
          sp. PCC 6803]
 gi|38423809|dbj|BAD02018.1| type I restriction-modification system M subunit [Synechocystis
          sp. PCC 6803]
          Length = 59

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7  SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
          S  ++ NFIW  A+D L   +    +  VILP T++RRL+  LEP++  V 
Sbjct: 5  SHNNIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDAVLEPSKEKVL 55


>gi|86152172|ref|ZP_01070384.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840957|gb|EAQ58207.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 43

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           GYEI F+++FY Y P RKL++I+ EL+ +E ++  LL E+ 
Sbjct: 2   GYEILFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 42


>gi|146318348|ref|YP_001198060.1| HsdM [Streptococcus suis 05ZYH33]
 gi|146320543|ref|YP_001200254.1| HsdM [Streptococcus suis 98HAH33]
 gi|145689154|gb|ABP89660.1| putative HsdM [Streptococcus suis 05ZYH33]
 gi|145691349|gb|ABP91854.1| putative HsdM [Streptococcus suis 98HAH33]
 gi|319757928|gb|ADV69870.1| putative HsdM [Streptococcus suis JS14]
          Length = 328

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 32/231 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
           +  ++  +   F   + L          V  +Y   G  ++  E +          T+  
Sbjct: 39  EAGEYKLLTQSFL-YKFLNDKFLYEALIVDNRYDYQGLLDLSEEDYDWFLDDIGTKTAHL 97

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFE---------------DFDFSST-------I 124
               L  +  R   ++  A   +                      D              
Sbjct: 98  KPEQLIESLHRQQNQADFAEIFEQTLNQIAIDNNAIFSVHTDGGTDIRLFDQRLITDTIS 157

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              ++  +   I    + ++             S ++E++I+ +  +      ++ TP  
Sbjct: 158 DASKRNEVAASIINLLARVKFDQQIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPHS 217

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           V  +  A+L+  D             +YDP+ G+G  L +  + + D    
Sbjct: 218 VAKIIAAILVGNDQPSNV-------KIYDPSAGSGTLLMNLASQIGDESGQ 261


>gi|196234435|ref|ZP_03133261.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196221491|gb|EDY16035.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 730

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 95/263 (36%), Gaps = 35/263 (13%)

Query: 155 MSNIYEH-LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ +YE+ LI R   EV +      TP  +V      L        +E P   R +Y+P 
Sbjct: 265 LAYVYENTLISR---EVRKELGTHSTPAYLVDYIVGRL----SPWIEEIPSDQRYVYEPA 317

Query: 214 CGTGGFLTDAMNHV-------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           CG  GFL  A+  +            H +        G +++     +    + +  + +
Sbjct: 318 CGHAGFLVAAVRLLTSLLPTEQATPPHRRAYLRERIQGSDVDSFALEIARLSLTLTDIPN 377

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                L ++    S L +   +G R    L+NPPF K     +DA  ++ +  +      
Sbjct: 378 PNGWKLKQDDAFASDLLESAASGSR--ILLANPPFEKIEPARRDAYTRQFRAPQFV---- 431

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                       ++H A         GG   +V+  + L +  A +     RR L +   
Sbjct: 432 -------SQAAEILHRAIS---ALPSGGVFGVVVPQNLLHSSDATA----FRRMLTDKAE 477

Query: 387 IEAIVALPTDLFFRTNIATYLWI 409
            E I   P  +F   ++ + + I
Sbjct: 478 FEEICLFPDKMFNFADVESGILI 500


>gi|268322724|emb|CAX37459.1| Pseudogene of Type I restriction enzyme mprotein (C-terminal part)
           [Mycoplasma hominis ATCC 23114]
          Length = 125

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I+T + +L   K +     +  I+A+  +    N       +       I+D Y
Sbjct: 1   MFFGTSISTCIMVLKKSKID---NNILFIDASQEFLKATN----NNKLTSQNINNIIDYY 53

Query: 457 VSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
             R++  + S++            +     +        + 
Sbjct: 54  GQRKDISYISKLASVEEIKSNSYNLSVNSYVEKQDTSEKIE 94


>gi|254304353|ref|ZP_04971711.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324545|gb|EDK89795.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 718

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 114/355 (32%), Gaps = 41/355 (11%)

Query: 237 PPILVPHGQE--LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-------DLF 287
              +  +G E     +  ++  A +    ++ +     +  +   S           +  
Sbjct: 246 NSSVTIYGSEDYFVRDKLSILKASLFSNNIKFENTDKENGIVFNDSAEENISTLKYFENR 305

Query: 288 TGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             ++      N      + K+    V +E+++     F      + + S+ ++ H+   L
Sbjct: 306 ESQKVDKIFLNLSQILGYYKNNIKEVTEEYRSKLENNFKIPNEILKNTSLEWIFHIL--L 363

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G+   ++ ++ L+  +       IR++ +EN  IE+I+ LP ++         
Sbjct: 364 INQLKEKGKGISLVKTNILYEPKN----KNIRKYFVENGYIESIIYLPKNMLIDYPFPLA 419

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-----------------EGKKRRIINDDQR 449
           L + S         K++ I+A       +                  + +   II D   
Sbjct: 420 LIVFSKENK-----KIKFIDAYKFCKMEKFKIEFIDNYFKNPKISEIKEQNINIIIDTNV 474

Query: 450 RQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            +I+D+  +++N K  FS+ ++        + V     +   + K     ++     + +
Sbjct: 475 EKIIDLINNQKNIKESFSKKIEDIVEKDYNLVVTENFEILVDILKKFKNEIKFKDIIKNI 534

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
               Q            Q Y Y          I+    +    +  K+    FI 
Sbjct: 535 VRGSQKTISKFKSEEETQ-YIYLSLSDINDGLIEFKNIENYLKEVPKNQEKFFIK 588


>gi|325284295|ref|YP_004256835.1| helicase domain-containing protein [Deinococcus proteolyticus MRP]
 gi|324316359|gb|ADY27472.1| helicase domain protein [Deinococcus proteolyticus MRP]
          Length = 1719

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 107/325 (32%), Gaps = 66/325 (20%)

Query: 162 LIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           ++RR+       E  + + TP+ +  L   +L        K+ P     + DPTCG+G  
Sbjct: 105 ILRRYSGGGGIGESIDAYYTPQALAKLMWQMLEAGMKKPSKKRPYR-ARVLDPTCGSGAL 163

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H                 G E + +   +          +  P   +     + 
Sbjct: 164 LIGAPEHTE-------------LTGVEYDKDAALIAE--------KILPHAAIYAVPFER 202

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T    + +   F   + NPPFG +    +D  E E    E                   
Sbjct: 203 FTTRSSVPS---FDMAIMNPPFGNR-GNTRDLHEPEESRSER------------------ 240

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLF 398
            ++  +     + GG  A VL  +  +    G      RR LL   L +  ++A+PT  F
Sbjct: 241 -YIMRQTIRRVSHGGLIAAVLPLNLFY----GEQHQAFRRELLATTLPLH-LIAVPTGAF 294

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
                 I T + +L       RR  V +  A +  T             D  +RQ++  +
Sbjct: 295 KASGAGITTVIALL-------RRHDVGVAEAVEELTDEELTTLMVDYSQDMIQRQLIQKF 347

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVL 481
           +  E    S ++D    G R   + 
Sbjct: 348 IQGE----SVVMDNGKDGQREYALS 368


>gi|189036158|gb|ACD75429.1| AMDV3_7 [uncultured virus]
          Length = 416

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 24/215 (11%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++           +   +             +F   L+NPPFG K            
Sbjct: 1   MNMVLHGDGHGKIHQANGIDKTS------GIEEGKFDLVLTNPPFGNKDSG--------- 45

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K  E    G    K     +  ++ +   L+     GG  AI+L    L         + 
Sbjct: 46  KILEQFDLGAPQGKPIKEQLREILFIEKCLKFLKP-GGELAILLPDGIL----NNEHLTY 100

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI-NATDLWTSIR 435
           +R ++ +  +I+A+++LP   F  +   +   +L  +K  ++  +   I  A   +    
Sbjct: 101 VRDYIRKEAVIKAVISLPDRAFKASGANSKTSLLFLKKRLKKDEEQLPIFMAIAEFVGYE 160

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            + K+ + I  +   +IL  Y   ++   S++ + 
Sbjct: 161 TKTKEAKPIEHNDLPRILKTYREYKS---SKLFEN 192


>gi|114332400|ref|YP_748622.1| type I restriction-modification system [Nitrosomonas eutropha
          C91]
 gi|114309414|gb|ABI60657.1| type I restriction-modification system [Nitrosomonas eutropha
          C91]
          Length = 92

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 11 LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          +++ IW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV E+  
Sbjct: 15 ISDLIWNIADDRLRDMYVRGKYRDVILPFTVLRRLDAVLESTKQAVLERKK 65


>gi|225352860|ref|ZP_03743883.1| hypothetical protein BIFPSEUDO_04494 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225156309|gb|EEG69878.1| hypothetical protein BIFPSEUDO_04494 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 101

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 4/96 (4%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
          +   LA+ IW++A  +    +  ++   IL F   + L               +      
Sbjct: 2  NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKANDFTEDDLPQLT 61

Query: 64 GSNIDLESFVKVA-GYSFYNTSEYSLSTLGSTNTRN 98
            N D+   V+   GY     + +S         R+
Sbjct: 62 EDNPDIVEGVQDECGYFIAYDNLFSTWIKKGQRFRD 97


>gi|34762952|ref|ZP_00143931.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887375|gb|EAA24466.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 556

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 114/355 (32%), Gaps = 41/355 (11%)

Query: 237 PPILVPHGQE--LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-------DLF 287
              +  +G E     +  ++  A +    ++ +     +  +   S           +  
Sbjct: 84  NSSVTIYGSEDYFVRDKLSILKAALFSNNIKFENTDKENGIVFNDSAEENISTLKYFENR 143

Query: 288 TGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             ++      N      + K+    V +E+++     F      + + S+ ++ H+   L
Sbjct: 144 ESQKVDKIFLNLSQILGYYKNNIKEVTEEYRSKLENNFKIPNKILKNASLEWIFHIL--L 201

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G+   ++ ++ L+          IR++ +EN  IE+I+ LP ++         
Sbjct: 202 INQLKEKGKGISLVKTNILYKPEN----KNIRKYFVENGYIESIIYLPKNMLIDYPFPLA 257

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-----------------EGKKRRIINDDQR 449
           L + S +       K++ I+A       +                  + +   II D   
Sbjct: 258 LIVFSKKNK-----KIKFIDAYKFCKIEKFKIEFIDNYFKNPKISEIKEQNINIIIDTNV 312

Query: 450 RQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            +I+D+  +++N K  FS+ ++        + V     +   + K     ++     + +
Sbjct: 313 EKIIDLINNQKNIKESFSKKIEDIVEKDYNLVVTENFEILVDILKKFKNEIKFKDIIKNI 372

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
               Q            Q Y Y          I+    +    +  K+    FI 
Sbjct: 373 VRGSQKTISKFKSEEETQ-YIYLSLSDINDGLIEFKNIENYLKEVPKNQEKFFIK 426


>gi|291568061|dbj|BAI90333.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1023

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 34/281 (12%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR 207
           +     ++ +YE   + F  +V++      TP+ +V      + +       K       
Sbjct: 284 SEKQHFLNTVYERFFQGFSLKVADTHGIVYTPQSIVDFMVKSVDEILRTEFNKSLSDKGV 343

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DP  GTG F+   M  +      HK    L  H  E+    + +    +    L + 
Sbjct: 344 HILDPFVGTGNFIMRIMREIRKTALSHKYQQEL--HCNEVMLLPYYIASMNIEHEYLTAT 401

Query: 268 PRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPPFGKKWEKDKD 310
            +      I    T S       DLFT +                + NPP+   W+++++
Sbjct: 402 GQYQPFDGICLVDTFSVQESLQLDLFTPENTQRVKQQQSSPIFVVIGNPPYNA-WQQNEN 460

Query: 311 AVEKEHKNGELG----RFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLS 361
              K  K  + G    R      K S  ++   ++                 G  A V +
Sbjct: 461 DNNKNRKYSQRGGVDKRVAETYAKDSKATLKNSLYDPYVKAFRWAADRIEDEGIVAFVSN 520

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           +S +     G     +R+ L ++     ++ L  ++   T+
Sbjct: 521 NSFI----DGIAFDGMRQHLAQDFDAIYVLDLGGNIRKNTS 557


>gi|115523500|ref|YP_780411.1| superfamily II DNA/RNA helicase [Rhodopseudomonas palustris BisA53]
 gi|115517447|gb|ABJ05431.1| DNA or RNA helicase of superfamily II [Rhodopseudomonas palustris
           BisA53]
          Length = 1066

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/457 (12%), Positives = 121/457 (26%), Gaps = 79/457 (17%)

Query: 36  LPFTL---------LRRLECALEPTRSAVREKYLAF-GGSNIDLESFVKVAGYSFYNTSE 85
           L              R+     +     V     A    +  D   F K A     +  E
Sbjct: 171 LGLFFEYERPEIVDFRKAVVQFQKDLPEVLAALRAMIDTAQKDNGPFRKAASKFLKHAQE 230

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKN- 139
                + + + R  L  +I    +    +F++ DF       ++             K  
Sbjct: 231 TINPMVTADDVREMLIQHI-LTEEIFSKVFDEDDFHRQNNVAKELYTLENLFFTGAVKKN 289

Query: 140 --------FSGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                   ++ I  +   VP+       +  IYE   + +  + ++      TP ++V  
Sbjct: 290 TMRALDTYYNAIRKNAHEVPNHTEKQRFLKMIYEGFYKVYNKKAADRLGVVYTPNEIVRF 349

Query: 187 ATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
                         K        + DP  GTG F+ + + H                H  
Sbjct: 350 MVESADWLCQKHFGKNLIDRDVQILDPATGTGTFICELLEHFRGQKDKLAHKYKEELHAN 409

Query: 246 ELEPETHAVCVAGML--------------------------IRRLESDPRRDLSKNIQQG 279
           E+    + V    +                              + +  + DL   + + 
Sbjct: 410 EVAILPYYVANLNIEATYAAITGQYAEFPNLCFVDTLDNVGGLGIRAGHQHDLFGAMSEE 469

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +         ++    + NPP+    + + D  +         R      K+S       
Sbjct: 470 NVARIKRQNTRKISVVIGNPPYNANQQNENDNNKNRTYPRIDERIKDTYIKLSTAQKTKA 529

Query: 340 MHLANKL----ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP- 394
             +  +         +  G  A + + S +    + + +   R    E   +  +V L  
Sbjct: 530 YDMYTRFFRWASDRLHDDGILAFITNRSFI---DSRTMDGFRRAVTAEYSDVY-VVDLGG 585

Query: 395 ------------TDLF-FRTNIATYLWILSNRKTEER 418
                        ++F  +T +A    +    K  E+
Sbjct: 586 DVRANPKLSGTRNNVFGIQTGVAISFLVKRRLKKGEK 622


>gi|238852889|ref|ZP_04643292.1| putative restriction-modification enzyme [Lactobacillus gasseri
           202-4]
 gi|238834481|gb|EEQ26715.1| putative restriction-modification enzyme [Lactobacillus gasseri
           202-4]
          Length = 907

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 135/425 (31%), Gaps = 53/425 (12%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I        A F+  D       ++   +L ++    +  +L       + + + +E ++
Sbjct: 5   IEHLLSKVNADFQFKDVYDNQTYIDNLNILKELVDLIAPYKLKY-AKKQQFLGDFFESIL 63

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGF 219
               +   + A  F TP  + H   + L  P       S    R     + D  CG+G F
Sbjct: 64  S---NGFKQEAGQFFTPVPLAHFIVSSLPLPQRTKTIISDESSRQLLPRMIDFACGSGHF 120

Query: 220 LTDAMNHVADCGSHHKIPPILVP--------------------HGQELEPETHAVCVAGM 259
           +T+ M+ +        +  +                       +G +++           
Sbjct: 121 ITEYMDEMQKIIETTDLKQLSKKQQQNFKQFKDNPFAWSNHYVYGLDIDYRLVKTSKVSS 180

Query: 260 LIRRLESDPRRDLSK-------NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +        R  +        +  +           + F   ++NPP+     K +   
Sbjct: 181 FLNGDGDAIIRRANGLASFSTSDYSEALHSENHEKMNQVFDILIANPPYHVDEFKSELPN 240

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            +E        F  G    ++ S +  + +    +L     G   I+L S+ L       
Sbjct: 241 LEED-------FELGKLITNNSSEIEALFIERASQLLKTD-GLMGIILPSAILDTENNIY 292

Query: 373 GESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
            E+  R+ LL+   I AI+  P    F  T + T + I   R+ ++   K++      + 
Sbjct: 293 VEA--RKMLLKRFEIVAIMKNPNKATFSATKVET-VTIFGKRRNDDNVLKIE----KQIR 345

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++ N       +N   R   +  Y+    GK   + DY      + +    +  ++  +
Sbjct: 346 KALNNGPVNDITLN--HRENCISTYIDHVFGKEFTLQDYTNLLAGKYEGEDTIVDNYKKE 403

Query: 492 KTGLA 496
              L 
Sbjct: 404 YKRLK 408


>gi|55822815|ref|YP_141256.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738800|gb|AAV62441.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 125

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/126 (8%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I   + IL   +       +  ++A+  +  ++N    ++ +  +   +I +  + R
Sbjct: 2   NTGIPVCVLILKKNRANS---DILFVDASQGFEKMKN----QKQLRPEDIYKITETVIHR 54

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +   K+S +            +  P  +    ++  +   +      ++          +
Sbjct: 55  KAVDKYSHLATLEEVIENDYNLNIPRYVDTFEEEEPIDLADIQGQIDEVDAEIAKANQTL 114

Query: 519 LKPMMQ 524
                +
Sbjct: 115 ANHFKE 120


>gi|84502048|ref|ZP_01000206.1| hypothetical protein OB2597_18212 [Oceanicola batsensis HTCC2597]
 gi|84390043|gb|EAQ02677.1| hypothetical protein OB2597_18212 [Oceanicola batsensis HTCC2597]
          Length = 1035

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 111/386 (28%), Gaps = 80/386 (20%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-------FSSTIARLEKAGLLYKICK-- 138
           L  L +   R  L S I     +    F   D        ++    L    L     +  
Sbjct: 217 LHNLVADADRPGLRSLIDKLRSDFNGDFLGDDRHDPWQALTANGFALLNQFLRRTDMQTG 276

Query: 139 --NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             +F   +     +P  ++S +YE  +     E       + TPR++  LA       D 
Sbjct: 277 QGDFWNYDFS--YIPVELLSGLYEKFL---TPEEQAKEGAYYTPRNLAMLAV------DQ 325

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKIPPILVPHGQE 246
           A       +   ++D  CG+G  LT A   +              +           G +
Sbjct: 326 AFLASQDPLDEVIFDGACGSGILLTTAYRRLLALQEARLGRQLGFAERGDLLKRRIFGSD 385

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDL-------------------SKNIQQGSTLSK-DL 286
           +      V    + +  LE     D+                   +   +QG    +   
Sbjct: 386 INFMACRVTAFSLYLSLLEGLDPADILEAQESDGTKLPPLKGSNLAHGSEQGDFFREAHA 445

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---GELGRFGPGLPKISDGSMLFLMHLA 343
           F G+RF   +SNPP+ +     + + +   +      + R   G   +     L      
Sbjct: 446 FRGRRFSLIISNPPWAEPEGASRTSADDWAEQAGVPFVRRQIAGAYALRAADFLA----- 500

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGS-GESEIRRW----LLENDLIEAIVALPTDLF 398
                     GR  ++L    L    +    E+ +  +    L+    +         L 
Sbjct: 501 --------ESGRICLILPIGQLLGASSEDFVETLLNTYRPTRLINFGDL-------QGLL 545

Query: 399 FRTNIATYLWILSNRKTEERRGKVQL 424
           F T   T    L   ++ + R  V  
Sbjct: 546 FPTAENTCHVFLGEGRSADARNLVPF 571


>gi|150024141|ref|YP_001294967.1| type I endonuclease-methyltransferase fusion protein
           [Flavobacterium psychrophilum JIP02/86]
 gi|149770682|emb|CAL42146.1| Probable type I endonuclease-methyltransferase fusion protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1011

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 180/572 (31%), Gaps = 91/572 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L  LE      R A ++++  +G  ++  ES++ +      N        L      +
Sbjct: 196 LFLLYLED-----RGATKKEF--YGEFSLKAESYLDLLKQGEVNHVYSLFEKLAEDFNGS 248

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                    +   +   +                     K FS   L +   +   ++S 
Sbjct: 249 LFNIEENEINLVTREHLDLI-----RQCFTSGYTKSNQIKLFSYWRLFNFSIIRIELLSE 303

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+ +     +  +    F TP         L+L+    +            DP+CG+G
Sbjct: 304 IYENFLSELDKKAKKNTGTFYTPPS----LVELILNEKLPVRNNETDYNVKTLDPSCGSG 359

Query: 218 GFLTDAM---------NHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLES 266
            FL  +           H +     + +  IL     G EL+ ++  V    + +  L++
Sbjct: 360 IFLVQSFKRLVKRYENKHNSKLNDFNILIDILKSNIFGIELDGKSIKVAAFSLYLALLDN 419

Query: 267 -DPRRDLSKNIQQGSTLSKD------------------------LFTGKRFHYCLSNPPF 301
            DP+ D      +   L  D                        +   + F   + NPPF
Sbjct: 420 LDPKTDWWNGTIKFPYLINDSEDTTLKEQGNNLFKRDTISDLSEIKKLQNFDLIVGNPPF 479

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G K                L        K S    + L  L     L P   G+ A++ +
Sbjct: 480 GTK--------------KLLPTITAYCKKESFAQEMVLPFLHKATLLAP--KGKIALIFN 523

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIE-----AIVALPTDLF----FRTNIATYLWILSN 412
           +  L N   G      R+WL     +E     +I+      F    F + I     +   
Sbjct: 524 TKVLTN--TGGTYQNFRKWLFNETYVEKVYNFSILRKAKKNFGGQLFGSAIEPICVVFYQ 581

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM----- 467
           ++  E   K   I      T I+N+  +  +I+    + +  I   + N K  ++     
Sbjct: 582 KENFETLNKKDTITYYSPKTYIKNDVLEGIVIDSSDEKHLPRIECQKPNTKIWKIAMWGS 641

Query: 468 -LDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADITWRK--LSPLHQSFWLDILKP 521
             D+          L+          +  TGL    A+ T ++  ++P       +I + 
Sbjct: 642 YFDFELIKKHEGNTLKNYFNNNNKSWVKGTGLHIPSANYTNKENIITPEKIIDTTNISRY 701

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
           ++ +        +++K + +  +A  L VK  
Sbjct: 702 LVVKNNLKNNETNYLKINEQLVKAPFLIVKKG 733


>gi|293363456|ref|ZP_06610213.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552976|gb|EFF41729.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
          Length = 102

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 1  MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
          M        A +   IW  AE+L G     DF + +L     R +   +    + +  K
Sbjct: 1  MNNKKELEQAEIHKTIWAIAEELRGTVDGWDFKQYVLGLLFYRFISENISSYINKIENK 59


>gi|86739811|ref|YP_480211.1| putative DNA methyltransferase [Frankia sp. CcI3]
 gi|86566673|gb|ABD10482.1| putative DNA methyltransferase [Frankia sp. CcI3]
          Length = 1100

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 99/340 (29%), Gaps = 62/340 (18%)

Query: 140 FSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            S ++       +R    ++YE+ + R+ +++ + +  + TPR+VV     L  D     
Sbjct: 301 ISSVDWPAIRNGNRDAYLHLYENFLTRYDAQLRQQSGSYYTPREVVEHMVRLAEDVLRTR 360

Query: 199 FKESP---GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQE 246
             +          + DP  GTG FL   +  VA+  S      + +          +G E
Sbjct: 361 LGKDHGYADPDVRIVDPAMGTGTFLHAIIERVAETASEGGGEGMEIDAVAQLAERLYGFE 420

Query: 247 LEPETHAVCV------------------AGMLIRRLESDPRRDLSK----NIQQGSTLSK 284
           L+   +AV                      + +      P  D  K      +  ++  +
Sbjct: 421 LQIGPYAVAELRTSDLLRAEEIPAPREGLNLFLTDTLDSPFSDTQKALFGYRELAASRQR 480

Query: 285 -DLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            D   G       + NPP+  K +K     EK+                +      L ++
Sbjct: 481 ADQVKGNVPVTVVIGNPPYDDKAKKRGKWAEKKIPGENRTPLDAFRHPGNGRYEHVLKNM 540

Query: 343 ANKL----------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-IV 391
                             +  G    +  S        G G   +R +L      E  ++
Sbjct: 541 YIYFWRWATWKVFDAHEADQHGLVCFITPSGF----STGPGGRGLRDYLRRTCH-EGWVI 595

Query: 392 AL-PTD--------LFFRTNIATYLWILSNRKTEERRGKV 422
            L P          +F        ++I   R      G  
Sbjct: 596 NLSPEGQRADVATRVFPAVAQPLGIYIFVRRAGSSPDGST 635


>gi|42518836|ref|NP_964766.1| hypothetical protein LJ0911 [Lactobacillus johnsonii NCC 533]
 gi|41583122|gb|AAS08732.1| hypothetical protein LJ_0911 [Lactobacillus johnsonii NCC 533]
          Length = 333

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 102/333 (30%), Gaps = 42/333 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
            T   +  ++   SFS      F+  +  +   ++E      +     +    +L  D +
Sbjct: 12  QTAIEHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDYDNL 69

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +   I+  L  +  ++ +       TP  V  +   +         K  P   +T+ 
Sbjct: 70  PRALKVQIFTLLALKAITQDASDYNLMPTPSVVATIIALI-------WQKIVPTGKKTVV 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  GTG  L   +  +           ++    +E              +  L      
Sbjct: 123 DPAIGTGNLLYSVIRQLIQENHSQNNYNLIGIDNEES-------------LLDLADIGAH 169

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I      + D +  ++    LS+ P G     +     + H              
Sbjct: 170 LEDLKIDLYCQDALDPWMIEKADVVLSDLPVGYYPLDNNAQRYENH----------AKEG 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S    LF+  + N L+      G A +V+          G G +E   WL +   I+AI
Sbjct: 220 HSFAHTLFIEQIVNNLKR----DGFAFLVVPRLLF----TGKGSTEFMTWLAKKVNIQAI 271

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V LP ++F        + +  N        +V 
Sbjct: 272 VDLPDNMFLSQIQQKSILVFQNHGDHAVEREVL 304


>gi|224418075|ref|ZP_03656081.1| restriction modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|253827404|ref|ZP_04870289.1| restriction-modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313141612|ref|ZP_07803805.1| restriction modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|253510810|gb|EES89469.1| restriction-modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313130643|gb|EFR48260.1| restriction modification enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 1322

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/494 (13%), Positives = 144/494 (29%), Gaps = 46/494 (9%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
           + +  YS  +      +    T +RNN+E+            F   +  +     +   +
Sbjct: 326 INIIYYSKNDIDNAFSNRYKDTPSRNNIENIFNDLKYFQNGDFNFLEVHNKELFNKNFNI 385

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++      I+   D    + + + +E  I             + TP  +V+     L 
Sbjct: 386 LLQVVLMLEDIKFSEDN--SQFLGDFFESYIHDMPQHE----GQYFTPVPLVNFIIYSLP 439

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
              D+           + D  CG G FL++         S       +   G + +    
Sbjct: 440 VLKDS----------RVLDFACGAGHFLSE--------YSKINNTYEVQYKGIDKDQRLA 481

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +      +           + +I+    L   +      +  +SNPP+        D  
Sbjct: 482 KISAIASFMYG--------KTMDIKYDDALKHGIIENDSINTIISNPPYSV------DGF 527

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            +     E   +      IS  +         K        G  ++VL SS   N    +
Sbjct: 528 LRTLNKTEKESYTLFNKNISLDTDKIECFFIEKASQVLESYGLLSLVLPSSIFSNNDTIT 587

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            ++  R  LL +  I AI       FF+T     +      K  ++    Q   A   + 
Sbjct: 588 IQT--REILLRDFYIIAICEFGNQTFFKTGTQPIILFAIK-KLRDKNITTQETRAQYFYK 644

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR--IKVLRPLRMSFIL 490
            I  +         ++  ++L  Y +    K+ +M++   FG       +       +I 
Sbjct: 645 LIMEDKTDNPY--KEELDELLHSYANFMRYKY-KMIEKLFFGVLENIDSIHHNNFKEYIQ 701

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
               + + E +    K       +     + + + I      +         +E   +K 
Sbjct: 702 TYNDILKKEKEKYNSKTKKYKDKYPFTPSQTLQEFIKQKEAEKFLYFCYALDSEPLIIKA 761

Query: 551 KASKSFIVAFINAF 564
                    F+  +
Sbjct: 762 PKDNEKQKKFLGYY 775


>gi|329119725|ref|ZP_08248405.1| type II restriction enzyme [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464174|gb|EGF10479.1| type II restriction enzyme [Neisseria bacilliformis ATCC BAA-1200]
          Length = 503

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 89/256 (34%), Gaps = 29/256 (11%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           ++     +TP  +V    A+L   D   +     + R + +P+CG G FLT+ +      
Sbjct: 4   AKTLGQVLTPHHIV---CAIL---DACGYSGCAVLGRFVMEPSCGDGAFLTEIVRRYIAA 57

Query: 231 GSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               ++ P            G E++ +    C+A +     E+     +   I  G TL 
Sbjct: 58  AKEARMTPEQTAADLSKYIFGIEIDEDMWHKCLARLDKIVSETLGSVRVQWQIMHGDTLH 117

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F + + NPP+ +           E     + R        +D   +F     
Sbjct: 118 LYANYPQTFDWVIGNPPYVRVHN------LPEDTRRFIKRHFQFAVGTTDMYPVFFETAF 171

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTN 402
             L+      G+   +  +S L+N          R +L +   ++ +  L    +F   +
Sbjct: 172 AMLK----PDGKLGFITPNSFLYNTS----YRRFRAFLRQQGSLKTLCDLKAEKVFAGFS 223

Query: 403 IATYLWILSN-RKTEE 417
             T + I+   RK  E
Sbjct: 224 TYTAITIMDFARKNAE 239


>gi|270284038|ref|ZP_06193809.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
 gi|270277980|gb|EFA23834.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
          Length = 185

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 38/170 (22%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             R L DPTCGT GFL  AM+ +   AD  +  K       HG EL+    AV  A M++
Sbjct: 46  KDRVLLDPTCGTAGFLISAMHRMLTLADTDAQKKNIKKKQLHGFELQSNMFAVAAANMIL 105

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           R       +D + N++    L K+      K     L NPP+ +  + D +  E      
Sbjct: 106 R-------KDGNSNLECCDFLRKNPAQVQLKGATVGLMNPPYSQGTKADPEQYEISF--- 155

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                              + H+ + L +      RAA+++  S +    
Sbjct: 156 -------------------IEHMLDSLAIDA----RAAVIVPQSSMTGKS 182


>gi|165933915|ref|YP_001650704.1| type I restriction-modification system methylation subunit
           [Rickettsia rickettsii str. Iowa]
 gi|165909002|gb|ABY73298.1| type I restriction-modification system methylation subunit
           [Rickettsia rickettsii str. Iowa]
          Length = 152

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 9/153 (5%)

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            PF +   K      K      +          ++G    ++H    L+     GGR A+
Sbjct: 1   MPFSQAITKKTSKNGKIITENHITFLFNNGIAKNNGDAACVLHCLQNLK----EGGRMAL 56

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           V+    LF     +    + ++LL    ++ +++LP   F   T + T +   +      
Sbjct: 57  VVPEGFLFRKDTSA----VHQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFTMHINRI 112

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +  +  +        + N+ +K   IND  RR
Sbjct: 113 IKKNIGFMRLRISALRLDNKKRKIVGINDLNRR 145


>gi|308270913|emb|CBX27523.1| hypothetical protein N47_H23450 [uncultured Desulfobacterium sp.]
          Length = 1001

 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/428 (13%), Positives = 120/428 (28%), Gaps = 129/428 (30%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           YN+  +  +        +NL  ++           +D         L      Y+     
Sbjct: 276 YNSGLFHFTKEKDRENYDNLTPFLQ---------IDDKPLKDIFNNLYYPESPYEF---- 322

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLA 187
                    +   ++  +YE  + +                EV +    + TP  +V   
Sbjct: 323 -------SVLSADILGQVYEKFLGKVIRLTAGHQAKIEEKPEVRKAGGVYYTPGYIVDYI 375

Query: 188 TALLLDPDDALFKESPGMIRT---LYDPTCGTGGFLTDAMNHVADCGSHHKIPP------ 238
               +       K  P    +   + DP CG+G FL  A   + D      I        
Sbjct: 376 VKNTVGKLVEGKKPGPRGGVSHLKILDPACGSGSFLIGAYQFLLDWHRDEYINDGPENWS 435

Query: 239 --------------------------ILVPHGQELEPETHAVCVAGMLIRRLESDPRR-- 270
                                         +G +++ +   V    +L++ LE +  +  
Sbjct: 436 KGKTPRIYQSRKGEWRLTTEERKRILTNNIYGVDIDHQAVEVTKLSLLLKVLEGEDEQSI 495

Query: 271 -------------DLSKNIQQGSTLSKDLF------------------------------ 287
                        DLS NI+ G++L    F                              
Sbjct: 496 GKQMLMFQKRVLPDLSNNIKCGNSLIGPDFYEHQPMSLLGEGEIFRVNAFDWNAEFAEIM 555

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   + NPP+G +  + + +  +      + R                M+  ++  
Sbjct: 556 KDGGFDAVIGNPPWGAELSERELSYLRRTNKDIIVRMID-----------SFMYFIHQSS 604

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   ++L    L+         ++RR+++ N  I+ I+ +  D+F + +  + +
Sbjct: 605 QKVKTLGYFGMILPDVLLYQIDN----EKLRRYIINNFRIKNILNM-GDVFDKVSRPSSI 659

Query: 408 WILSNRKT 415
            I  N   
Sbjct: 660 LIFENSNP 667


>gi|295425499|ref|ZP_06818192.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064838|gb|EFG55753.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus amylolyticus DSM 11664]
          Length = 334

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 106/324 (32%), Gaps = 47/324 (14%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLI 163
           SF +     F+  +  +   ++E      +     S +  +L+ + +P R    I+ +L 
Sbjct: 25  SFGEALTETFD--NLENGKIKVEMGAPDTETVAQLSKMYAQLNYEQLPKRSKVLIFNYLT 82

Query: 164 RRFGSEVSEGAEDFMTPRD---VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            +  ++    +    TP     V+ L    LL  D  L          + DP  GTG  L
Sbjct: 83  LKAINDDGRNSNQMPTPPALATVIALLMQRLLPADQQLE---------VVDPALGTGSLL 133

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
              +N +        +  +      E   +   +      +  L+ D     +       
Sbjct: 134 YSVINQLKTENHSKNLYQLAGIDNDEQMLDFADIAAH---LNELKIDLYCQDAMMP---- 186

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                 +  +     +S+ P G         ++   ++ EL          S    LF+ 
Sbjct: 187 ------WMTEPADAIVSDLPIGYY------PLDNNAEHFEL----KNKKGHSYAHFLFVE 230

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            +   L+     GG A +++ +  L     G   ++   WL +   + AI+ LP D+F  
Sbjct: 231 QIVKNLKA----GGFAFLLVPTGML----QGKDRNQFMPWLTKKVFLNAIIDLPDDMFRN 282

Query: 401 TNIATYLWILSNRKTEERRGKVQL 424
                 + +  N     +   V L
Sbjct: 283 KFNQKSILVFQNHGDNAKAKDVLL 306


>gi|307067488|ref|YP_003876454.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|306409025|gb|ADM84452.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
          Length = 237

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 28/194 (14%)

Query: 64  GSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDF 118
           G   D E   +   G    +  EY  ST  +      +       I  F  N K   +D 
Sbjct: 47  GRESDAEFLGIPYEGVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDT 106

Query: 119 DFSS----TIARLEKAGLLYKICKNFS-------GIELHPDTVPDRVMSNIYEHLIRRFG 167
            FS      I ++ K   L K              ++   D      + +IYE+L+ +  
Sbjct: 107 AFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLS 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +        F TPR ++ +   L+           P +   + DP  G    +    N  
Sbjct: 167 TAG--KNGQFRTPRHIIDMMVELM----------QPTIKDIISDPAMGFRVIIVIEANSY 214

Query: 228 ADCGSHHKIPPILV 241
            +  S   +P    
Sbjct: 215 VNIRSSRLLPKFKT 228


>gi|237752124|ref|ZP_04582604.1| type II restriction-modification enzyme [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376366|gb|EEO26457.1| type II restriction-modification enzyme [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 894

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 121/397 (30%), Gaps = 50/397 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L ++   LE T             S  DL +   K+         +  ++ +   +  
Sbjct: 99  LFLCKITDELENTNDLQFSWRGNMQDSAFDLVDRLQKLYKTGMEKYLKQKITYVSKNDID 158

Query: 98  NNLESYIASFSD--------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
               + I + S              F + DF+     +    L YK  K    I L  + 
Sbjct: 159 KAFGASIKAISPRKAIYEIFTRLKYFSNGDFN--FIEVYNKELFYKNFKILLPIVLKLED 216

Query: 150 ------VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     ++ + +E  I        +    + TP  +V+     L    D+      
Sbjct: 217 TAFTKNADSNILGDYFESYIHDM----PQQEGQYFTPVPLVNFIIHSLPVLKDS------ 266

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + D +CG G FLT            +K        GQ+ +P          + + 
Sbjct: 267 ----KVLDFSCGAGHFLTQYAEI-------NKPYQKAKFLGQDKDP------RLAKIAKI 309

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            +       +K     +   +       F+  +SNPP+      +   V  +        
Sbjct: 310 AKIASFMHQTKMEILANDSLECGIEDSSFNVLISNPPYSVDGFLN---VLSDETRRSYEL 366

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F   L   S+ ++        K        G  ++VL ++ L N +        R  LL 
Sbjct: 367 FNDNLNIESNDTIQCF--FIEKASKALQSNGLLSLVLPNTILENDKGIPLNKPTREILLR 424

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWI-LSNRKTEERR 419
           +  I AI  L +  FF+TN +  +   L  +K    +
Sbjct: 425 DFYIIAICELGSATFFKTNTSPIVLFALRKQKNTRAQ 461


>gi|229543537|ref|ZP_04432597.1| N-6 DNA methylase [Bacillus coagulans 36D1]
 gi|229327957|gb|EEN93632.1| N-6 DNA methylase [Bacillus coagulans 36D1]
          Length = 333

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 98/296 (33%), Gaps = 48/296 (16%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS +I +           +N  G  +  +      +   Y+  I + G + +  A   MT
Sbjct: 40  FSGSIRQNGIGAHDENRLENLYGT-VRLEDFTREQIRKAYQLAILK-GMKANVQANHQMT 97

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +  L +  +    +           ++ DP  GTG  L   +N ++           
Sbjct: 98  PDSIGLLMSYFIGKFTEDTSA------FSILDPAVGTGNLLATILNQLSGKN-------- 143

Query: 240 LVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
           +  +G +++     +    A +L   +E   +  LS+                     + 
Sbjct: 144 ITAYGVDIDDVLIRLAYTGANLLHHEIELFTQDALSQLFI------------DPVDVVVC 191

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           + P G  +  D  A + + K  E              S    + +   L      GG   
Sbjct: 192 DLPVG-YYPNDAGAADYKLKADEGH------------SYAHHLFIEQSLRAA-RPGGFLF 237

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            ++ +       A     ++R++L E   I+AI+ LP  +F     A  ++++  +
Sbjct: 238 FLIPNGLFETKEAP----KLRQFLKEEADIQAILQLPMTIFKNEQAAKSIFVIRKK 289


>gi|329575570|gb|EGG57107.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 113

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
          A L   ++  A++L      +++   +L     + L   L  T   + ++ L    +   
Sbjct: 3  AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 69 LESFVK 74
               K
Sbjct: 63 QTELYK 68


>gi|157829188|ref|YP_001495430.1| hypothetical protein A1G_07415 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801669|gb|ABV76922.1| hypothetical protein A1G_07415 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 152

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 9/153 (5%)

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            PF +   K      K      +          ++G    ++H    L+     GGR A+
Sbjct: 1   MPFSQAITKKTSKNGKIITENHITSLFNNGIAKNNGDAACVLHCLQNLK----EGGRMAL 56

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           V+    LF     +    + ++LL    ++ +++LP   F   T + T +   +      
Sbjct: 57  VVPEGFLFRKDTSA----VHQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFTMHINRI 112

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            +  +  +        + N+ +K   IND  RR
Sbjct: 113 IKKNIGFMRLRISALRLDNKKRKIVGINDLNRR 145


>gi|312977660|ref|ZP_07789407.1| putative modification methylase [Lactobacillus crispatus CTV-05]
 gi|310895399|gb|EFQ44466.1| putative modification methylase [Lactobacillus crispatus CTV-05]
          Length = 333

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 103/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +  S   ++E      K     S     +  D +  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLESGKIKVENGAPDEKTVAELSQKYQAIDYDEISQKEKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DP  GTG  L   
Sbjct: 83  LKAVNDDGFDVNQMPTPPAIATVVAMLM-------HKLLKDQKMEIVDPAVGTGNLLFSI 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + +  ++      +  ++ +     +          
Sbjct: 136 ISQLKALNH---SKDNYQLVGIDNDEDMLSLTDVAAHLNNIDIELYHQDALMPWMCP--- 189

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         V++  KN E           S   +L +  + 
Sbjct: 190 -------NADAIVSDLPVGYY------PVDENAKNFE----NQAKKGHSFAHLLLIEQII 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 NNLKP----NGYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   E +  +V L
Sbjct: 285 PKSVLVFQNHGDEAKASEVLL 305


>gi|148657052|ref|YP_001277257.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148569162|gb|ABQ91307.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 926

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 92/298 (30%), Gaps = 33/298 (11%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++S +Y    + +G E  +    + TP  +       +        +  P   R + D 
Sbjct: 286 DMLSALYT---KAYGKEKRKKLGFYDTPLYLTRRILHNI------PVEFLPPKQRIVVDM 336

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG G FL   +  ++               G +++  T  +                + 
Sbjct: 337 TCGWGSFLIAGVERLSQLSDMRDQSLRDHIIGNDIDIFTAQLAG------LGLLLATSED 390

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           S +I                   + NPPF  + ++ +   +     G+  R         
Sbjct: 391 SWHIDHEDARQWSWIDMHTPGIIVGNPPFRGRRDQPESLEDLMPTKGKRTRV-------- 442

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  +L             GG  A+++  S L          ++RR LLE+  +  I  
Sbjct: 443 EAANAYLDLAIR----NVRTGGYIAMIMPQSFLVAEAGP----DVRRNLLESCDVTEIWE 494

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LP  +F    +   +     RK   +R  V  I   ++  S     KK  I       
Sbjct: 495 LPGRMFPDAKVQPIVLF--ARKESGKRKTVFPIRTRNVQKSTIEAFKKSGIFTASNIA 550


>gi|300870186|ref|YP_003785057.1| fused endonuclease-methyltransferase [Brachyspira pilosicoli
           95/1000]
 gi|300687885|gb|ADK30556.1| endonuclease-methyltransferase fusion protein type IIG, BpmI
           [Brachyspira pilosicoli 95/1000]
          Length = 906

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 86/634 (13%), Positives = 181/634 (28%), Gaps = 127/634 (20%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           ++I     LR     +   R+      LA        E   K  G++  N+   +L+ + 
Sbjct: 144 QIIDRIIFLR-----VAEDRNVENYGLLALANPKNKNEDDFKNYGFNGENSYYENLNYIF 198

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                          +       +D      I  L      Y+              +P 
Sbjct: 199 DRANEKYNSGLFDEDAIVRNLNIDDKTIKDIIDELYTPKNPYQF-----------SVIPV 247

Query: 153 RVMSNIYEHLIRRFGS-------------EVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++ N YE  + +  S             EV +    + TP  +V    A  +       
Sbjct: 248 EIIGNAYEQFLGKTISIDKNHKAVIELKPEVRKAGGVYYTPEYIVDYIVANTVGEAIKGK 307

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---------------- 243
                +   + DP CG+G FL  A  ++ +    + +      +                
Sbjct: 308 TPDEIVNIKILDPACGSGSFLLGAYKYLLNYHKEYFLKNKTKKYMGSRYEIIDESGNLAL 367

Query: 244 ------------GQELEPETHAVCVAGMLIRRLESDPRRD---------------LSKNI 276
                       G +++     V    +L++  E     +               L  NI
Sbjct: 368 WVRKQILINNIFGVDIDSNAVEVAKLSLLLKSFEDSFNVNEYGQGSLLNEKILPSLDNNI 427

Query: 277 QQGST----------------------------LSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           + G++                              +D+     F   + NPP+ +     
Sbjct: 428 KCGNSLIGNDFYESHLDLDDATLYKINCFDWNSKFRDIMKTGGFDVVIGNPPYVQ----- 482

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              +EKE K G             D   LF     + L++    GG   ++ S+  +   
Sbjct: 483 IQGMEKELKEGYKEANYKNYISTGDIYQLFFEKGLDVLKI----GGIVGMITSNKWMQAN 538

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                    R +   N  +  ++ L    F    + T + + S +  E +  +     A 
Sbjct: 539 YGAVT----RDYFYRNANVNGVIDLGGGRFKGATVDTSIILYSKKDDEIKINEPIEFKAV 594

Query: 429 DLWTSIRN----EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR----RIKV 480
             +  +      + K   I+ D  ++ ++    + EN  F+++  +++           +
Sbjct: 595 KFYDDLSELNNIQFKNDIIVADKDKQWLI--MNNIENSIFNKVRQFKSLKNWGVQINYGI 652

Query: 481 LRPLRMSFILDKTGLARL--EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                 +FI+D+     L  E + +   +  L +   +         +Y          +
Sbjct: 653 KTGFNEAFIIDEETKNNLINEDEKSSEIIRKLVRGRDIKRYTCNFCDLYLINTHNGVKNK 712

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           +I     K     A K  +  F     ++  + D
Sbjct: 713 NISPINIKDY--PAIKKHLDKFYKQLEKRQDKGD 744


>gi|67920386|ref|ZP_00513906.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67857870|gb|EAM53109.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 179

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEER 418
           +    LF   +      IR+ L+E+  ++ ++++P+ +F     ++T + I +       
Sbjct: 1   MPDGVLF--GSSKAHKTIRKTLVEDHKLDGVISMPSGVFKPYAGVSTAILIFTK----TG 54

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            G    +   D+     +   KR+ I  +    I+  +  RE
Sbjct: 55  VGGTDYVWFYDMEADGFSLDDKRQKIEKNDIPDIIKCWKERE 96


>gi|260588053|ref|ZP_05853966.1| putative adenine specific DNA methyltransferase [Blautia hansenii
           DSM 20583]
 gi|331082378|ref|ZP_08331504.1| hypothetical protein HMPREF0992_00428 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541580|gb|EEX22149.1| putative adenine specific DNA methyltransferase [Blautia hansenii
           DSM 20583]
 gi|330400864|gb|EGG80465.1| hypothetical protein HMPREF0992_00428 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 721

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 43/257 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           + ++  IY   I        +    + TP  VV           + + K        + D
Sbjct: 243 EDILGLIY---ISCKNIGNRKATGSYYTPTKVVK----------NLISKLDFQATPKILD 289

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CGTG FL    +H+          P     G +++  +  +    M ++     P   
Sbjct: 290 PCCGTGNFLLQLPDHI----------PFDSVFGNDIDTVSVKITRLNMALKY--DVPVSS 337

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + ++I   + L++  +T   F Y + NPP+G            E    E  +        
Sbjct: 338 ICEHITAFNYLTE--YTNTGFRYIIGNPPWG-----------FEFSVSEKNKLRKLFKAT 384

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S  ++        +     +  G  A +L  + L         + IR  +L+N  I+ I 
Sbjct: 385 SGKNIESYDIFIEQSLNHLSDNGHLAFILPEAIL----NVKAHTNIREIILKNCSIKNID 440

Query: 392 ALPTDLFFRTNIATYLW 408
            L  + F        L 
Sbjct: 441 FL-GNAFDGVQCPCILL 456


>gi|218891096|ref|YP_002439962.1| hypothetical protein PLES_23591 [Pseudomonas aeruginosa LESB58]
 gi|218771321|emb|CAW27086.1| hypothetical protein PLES_23591 [Pseudomonas aeruginosa LESB58]
          Length = 707

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 23/185 (12%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD---PDDALFKESPGM 205
            V   ++  +++  +R        G   ++TP  V      + +     D++  +     
Sbjct: 293 DVAGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIQQDNSAMERLTAG 351

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH------------HKIPPILVPHGQELEPETHA 253
                DPTCG+ GF + A++H+     H             +        G +  P    
Sbjct: 352 AFRFCDPTCGSFGFGSVALSHIESVVDHLGGMSDAQKKALKQTLRDTAFTGADAAPRMVM 411

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAV 312
           +    M ++          +K     ++L+   F    F    +NPPFG  K+  DK   
Sbjct: 412 LARVNMALQG------APKAKIFYTDNSLTTKAFKANSFDLICTNPPFGTPKFTSDKKGK 465

Query: 313 EKEHK 317
           E + +
Sbjct: 466 ESKER 470



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 32/167 (19%)

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K    G + P +    D ++LF+      L      GGR  IVL    L      SG+  
Sbjct: 550 KPDGKGNWKP-VGATIDPAVLFIDRCLQLLRP----GGRLLIVLPDGVL----CNSGDRY 600

Query: 377 IRRWLLENDL------------IEAIVALPTDLF--FRTNIATYLWILSNRKT------- 415
           +R +++                ++A+++LP D F    T   T +  L  R         
Sbjct: 601 VREYIMGKKDEITGQFVGGKAIVKAVLSLPADTFKLSGTGAKTSVLYLQKRHASNEHPEQ 660

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              E +G V +  A  L   ++N  +       +   +I+  Y   E
Sbjct: 661 FLPEPQGDVFMAVAETLGYVVKNNIEDYSAGVPNDLDKIVGAYKRGE 707


>gi|310831004|ref|YP_003969647.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386188|gb|ADO67048.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 913

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 102/318 (32%), Gaps = 27/318 (8%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGS 168
           N     +D DF +     +K  +L  + K+     E +       ++   YE  +  +  
Sbjct: 212 NTSKFIKDSDFIN----CKKNSILKDLIKDIQTFCEKYHIFEYSDIVGIAYEFWMNEYRG 267

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F T R ++ +   ++   D    K +     T+ D  CGT GF     + + 
Sbjct: 268 GGGKELGNFFTERRLMRMCFEMIDKKDIKRLKINNDS--TIGDEFCGTFGFPLYLKSFLK 325

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D          +  +G E E     + +   +          D  +N+ +G +   ++  
Sbjct: 326 DKFKIDIKNENI--YGVEFEDRASRMAILNAM-------FSLDNVENVVRGDSFITNISP 376

Query: 289 GKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                  + N PFG   K++  K   E+   N         + K        L       
Sbjct: 377 --HLDISVHNVPFGGRMKYKNIKRHYEEYKINHPDIPGFDEIIKSKANQDATLASQMVLY 434

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +    G      ++       G         R++L ++  I+ I+ +P+  F  T   T 
Sbjct: 435 KTNKMG----ICIIKDGQEATGT-TKELVAYRKFLCDSVNIKKILKIPSGAFSSTGTKT- 488

Query: 407 LWILSNRKTEERRGKVQL 424
                  K   +   +Q 
Sbjct: 489 -LCFYFVKDGNKTENIQF 505


>gi|313158825|gb|EFR58208.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 258

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 26/179 (14%)

Query: 107 FSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL--HPDTVPDRV----MSN 157
           F D    I + F F +      R +   +  +  + F  I L  +     DR       N
Sbjct: 30  FDDMLAYIVDLFSFDNPWEPHGRYKDPEIRKRFFELFQEIVLLMNKKICDDREWYDPFGN 89

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y+  I       +  A  F TP  +V L  ++     +   +E  G      DP CG+G
Sbjct: 90  LYQTQIASHARRAN--AGQFFTPEHIVDLMVSI-----NGEGRELTGKGLNFGDPACGSG 142

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            FL  A          H   P     G++++     + V   ++  +  +     S   
Sbjct: 143 RFLIAA----------HAKFPGNYCCGEDIDRTCALMTVCNFILHGVNGEVIWHDSLMP 191


>gi|39939105|ref|NP_950871.1| type I restriction-modification system methyltransferase subunit
           [Onion yellows phytoplasma OY-M]
 gi|39722214|dbj|BAD04704.1| type I restriction-modification system methyltransferase subunit
           [Onion yellows phytoplasma OY-M]
          Length = 122

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 38/153 (24%)

Query: 155 MSNIYEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           M  IY +LI  F S+     + + +F TP  V  L + ++        K     I  +YD
Sbjct: 1   MGEIYMYLIETFVSDNITKKQKSGEFFTPPSVSELLSQIIC------HKTKNKNITKIYD 54

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L   +NH+ +              GQ+ + +                     
Sbjct: 55  PFCGSGSLLLKIINHINNNKD---------FSGQKYKND------------------IPY 87

Query: 272 LSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFG 302
            +  I+ G TL         ++++  ++NPPFG
Sbjct: 88  YNLKIENGDTLLFPHQSHLEQKYNIIIANPPFG 120


>gi|268319769|ref|YP_003293425.1| hypothetical protein FI9785_1298 [Lactobacillus johnsonii FI9785]
 gi|262398144|emb|CAX67158.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 333

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 102/333 (30%), Gaps = 42/333 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
                +  ++   SFS      F+  +  +   ++E      +     +    +L  D +
Sbjct: 12  QAAIEHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDYDNL 69

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +   I+  L  +  ++ +       TP  V  +   +         K  P   +T+ 
Sbjct: 70  PRALKVQIFTLLALKAITQDARDYNLMPTPSVVATIIALI-------WQKIVPTGKKTVV 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  GTG  L   +  +           ++    +E              +  L      
Sbjct: 123 DPAIGTGNLLYSVIRQLIQENHSQNNYNLIGIDNEES-------------LLDLADIGAH 169

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I      + D +  ++    LS+ P G     +     + H              
Sbjct: 170 LEDLKIDLYCQDALDPWMIEKSDVVLSDLPVGYYPLDNNAQRYENH----------AKEG 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S    LF+  + N L+      G A +V+          G G +E   WL +   I+AI
Sbjct: 220 HSFAHTLFIEQIVNNLKR----DGFAFLVVPRLLF----TGKGSTEFMTWLAKKVNIQAI 271

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V LP ++F        + +  N   +    +V 
Sbjct: 272 VDLPDNMFSSQIQQKSILVFQNHGEKAVEREVL 304


>gi|164688287|ref|ZP_02212315.1| hypothetical protein CLOBAR_01932 [Clostridium bartlettii DSM
          16795]
 gi|164602700|gb|EDQ96165.1| hypothetical protein CLOBAR_01932 [Clostridium bartlettii DSM
          16795]
          Length = 80

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 19/55 (34%)

Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              +W +A+ L  +    ++  ++L    L+ +          + E+   F   
Sbjct: 6  FEEKLWASADKLRNNMDAAEYKHIVLGLIFLKYVSDTFMEKHKELMEEDEEFAED 60


>gi|59800800|ref|YP_207512.1| hypothetical protein NGO0356 [Neisseria gonorrhoeae FA 1090]
 gi|194098090|ref|YP_002001138.1| hypothetical protein NGK_0513 [Neisseria gonorrhoeae NCCP11945]
 gi|239998547|ref|ZP_04718471.1| hypothetical protein Ngon3_03584 [Neisseria gonorrhoeae 35/02]
 gi|240013672|ref|ZP_04720585.1| hypothetical protein NgonD_03320 [Neisseria gonorrhoeae DGI18]
 gi|240016111|ref|ZP_04722651.1| hypothetical protein NgonFA_02913 [Neisseria gonorrhoeae FA6140]
 gi|240112465|ref|ZP_04726955.1| hypothetical protein NgonM_02591 [Neisseria gonorrhoeae MS11]
 gi|240115205|ref|ZP_04729267.1| hypothetical protein NgonPID1_02968 [Neisseria gonorrhoeae PID18]
 gi|240117491|ref|ZP_04731553.1| hypothetical protein NgonPID_03376 [Neisseria gonorrhoeae PID1]
 gi|240123045|ref|ZP_04736001.1| hypothetical protein NgonP_03736 [Neisseria gonorrhoeae PID332]
 gi|240125298|ref|ZP_04738184.1| hypothetical protein NgonSK_03603 [Neisseria gonorrhoeae SK-92-679]
 gi|240127751|ref|ZP_04740412.1| hypothetical protein NgonS_03775 [Neisseria gonorrhoeae SK-93-1035]
 gi|260440977|ref|ZP_05794793.1| hypothetical protein NgonDG_07826 [Neisseria gonorrhoeae DGI2]
 gi|268594405|ref|ZP_06128572.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596402|ref|ZP_06130569.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598533|ref|ZP_06132700.1| N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268600885|ref|ZP_06135052.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|268603191|ref|ZP_06137358.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268681672|ref|ZP_06148534.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268683899|ref|ZP_06150761.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268686142|ref|ZP_06153004.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044305|ref|ZP_06570014.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399496|ref|ZP_06643649.1| hypothetical protein NGNG_01480 [Neisseria gonorrhoeae F62]
 gi|59717695|gb|AAW89100.1| hypothetical protein NGO0356 [Neisseria gonorrhoeae FA 1090]
 gi|193933380|gb|ACF29204.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268547794|gb|EEZ43212.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268550190|gb|EEZ45209.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582664|gb|EEZ47340.1| N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268585016|gb|EEZ49692.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|268587322|gb|EEZ51998.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268621956|gb|EEZ54356.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268624183|gb|EEZ56583.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268626426|gb|EEZ58826.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011199|gb|EFE03195.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610065|gb|EFF39187.1| hypothetical protein NGNG_01480 [Neisseria gonorrhoeae F62]
 gi|317163822|gb|ADV07363.1| hypothetical protein NGTW08_0391 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 274

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 36/169 (21%)

Query: 251 THAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEK 307
             A+  + M++R   +++  +           +         KR +    NPP+ +    
Sbjct: 1   MFALAASNMILRGDGKANLHQSSCFMTDFQDLIKNPKPETGLKRPNVGFLNPPYAQS--- 57

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                                   SD  +  L  +   L++   GG   AI+  S  +  
Sbjct: 58  -----------------------KSDAELHELYFVKEMLDMLAEGGTGIAIIPVSCVIAP 94

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +A S        +++   ++A++++P++LF+     T + +    K  
Sbjct: 95  SKAKS-------EIVKYHRLKAVMSMPSELFYPVGTVTCIVVFEAHKPH 136


>gi|290956126|ref|YP_003487308.1| hypothetical protein SCAB_16041 [Streptomyces scabiei 87.22]
 gi|260645652|emb|CBG68743.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1067

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 92/322 (28%), Gaps = 69/322 (21%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPT 213
           ++YEH +  +   + + +  + TP ++V     L  D       +  G       + DP 
Sbjct: 282 HLYEHFLTVYDPALRQQSGSYYTPHEIVEEMVRLTEDVLRVRLDQEAGFGSEEVKIIDPA 341

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQELEPETHAVC--VAGMLIR 262
            GTG FL   +  VA+       P +             G EL+    AV    A  L++
Sbjct: 342 MGTGTFLHTIIERVAEQAVADHGPAMARDAISRLATRLFGFELQMGPFAVAELRASDLLK 401

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK-----------------------RFHYCLSNP 299
           R  +    D   N     TL       +                            + NP
Sbjct: 402 RYHAALPGD-GLNFFVTDTLDNPFVEDEYLASTYGALSAFRRRANRVKRNIPVTAVVMNP 460

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL----------- 348
           P+  K E     VEK  +  E            +G      H+   + +           
Sbjct: 461 PYDDKAEGRGGWVEKRAQGQEPP-LLDAFRHQGNGRY---EHVLKNMHVYFWRWATWKVF 516

Query: 349 ---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---------PTD 396
              P +  G   ++  S     G  G G  +  R   +      I+ L         P  
Sbjct: 517 DAHPDDRHGVVCLITPSGW-ATGPGGRGMRDYLRRTCDEGW---IIDLTPEGQRSPVPNR 572

Query: 397 LFFRTNIATYLWILSNRKTEER 418
           +F        + I   R   +R
Sbjct: 573 VFPGVAQPLAIHIFVRRADTQR 594


>gi|330814761|ref|YP_004362936.1| type I restriction-modification system, M subunit, putative
           [Burkholderia gladioli BSR3]
 gi|327374753|gb|AEA66104.1| type I restriction-modification system, M subunit, putative
           [Burkholderia gladioli BSR3]
          Length = 1050

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 96/311 (30%), Gaps = 65/311 (20%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D +P   +S+IYE  +    ++       F TP  +V      +L             
Sbjct: 330 SFDVIPLEFISSIYETFVSDRAAD-----GVFYTPPYLVDFVLDRVLP------WSGHEW 378

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAV 254
              + DP CG+G FL  A   +            +              G + +P    V
Sbjct: 379 DLKILDPACGSGIFLVKAFQRLVHRWKQANPGQSIRAETLRNLLERNIFGVDKDPHAVRV 438

Query: 255 CVAGMLIRRLESDPRRDLS-----KNIQQGSTLSKDLFTGKR-----------FHYCLSN 298
               + +   +    R          +++   +  D F   +           +   + N
Sbjct: 439 ACFSLYLAMCDEVEPRHYWTQIVFPTMREQRLVCSDFFAEDKGGFHTISDAGSYDLVVGN 498

Query: 299 PPFGKKWEKDK---DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            P+G     +     A +  HK             +++  +  L  LA  + L    G  
Sbjct: 499 APWGDSLVTNAAIGWASDDRHK-----------WTVANKDIGGL-FLAKAMHLLARHGRI 546

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLF----FRT--NI-AT 405
           A I  ++S LFNG A +     R+ L     +E I  L      +F      T  +I   
Sbjct: 547 AMIQSANSLLFNGSAKA--LAFRQELFTTHRVEEIYNLSALRFKVFKRKSHTTKMSISPA 604

Query: 406 YLWILSNRKTE 416
            + I+S  K  
Sbjct: 605 CVVIMSGEKPT 615


>gi|222444445|ref|ZP_03606960.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434010|gb|EEE41175.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii
          DSM 2375]
          Length = 101

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 7  SAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
          + +  ANFIW  A+  L G +K  D+ KVILPFT+L+R +  L  ++ AV + Y      
Sbjct: 3  NFSEKANFIWSIADSILRGYYKRNDYQKVILPFTVLKRFDSVLPYSKDAVVQAYEENKND 62

Query: 66 N------IDLESFVKVAGYSFYNTSEYSLSTLGST 94
          +      +            FYN S Y    L   
Sbjct: 63 DGLELILMSESVDENGKKLGFYNYSPYDFKKLLED 97


>gi|163868224|ref|YP_001609432.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|163868234|ref|YP_001609442.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017879|emb|CAK01437.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017889|emb|CAK01447.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1657

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/447 (13%), Positives = 127/447 (28%), Gaps = 52/447 (11%)

Query: 45   ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              A     S  +E            E+   +A +       +     G+   +NN     
Sbjct: 763  SEAFHAFESFHKELKNNLNSEIKQEEALEMLAQHLVTRPV-FEALFDGNEFVQNN----- 816

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S   + I  + D ++     ++    Y   K  +     P    + ++  +YE    
Sbjct: 817  -AISQAMEKILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFT 874

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP +VV      + D   +   K       ++ DP  GTG F+T  
Sbjct: 875  KAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIR---------RLESDP 268
            +          +       H  E+    + +    +      L++          L    
Sbjct: 935  LQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTF 994

Query: 269  RRDLSKNIQQ----GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            R    KN+ Q     ++   +          L NPP+  K + + D  +         R 
Sbjct: 995  RMLEEKNLLQELFKENSEYLEHQKKLDIKVILGNPPYSTKQKNENDNAKNTPYPILDKRI 1054

Query: 325  GPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   S  + +  ++                 G    V ++  +     G     +R+
Sbjct: 1055 SETYAAHSKATNMQALYDSYIRAIRWASDRIGNAGVIGFVTNAGFI----TGHSMDSLRK 1110

Query: 380  WLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQL 424
             L+E      I  L  +              +F   +     + IL      ++ GK+  
Sbjct: 1111 CLVEEFSSLYIFHLRGNARTSGEQRKKESGGIFGSGSRAPIAISILVKNPNAQQHGKIYF 1170

Query: 425  INATDLWTSIRNEGKKRRIINDDQRRQ 451
             +  D            ++ + D   +
Sbjct: 1171 RDIGDYLNREEKLTIIEKLRSIDGITR 1197


>gi|89894238|ref|YP_517725.1| hypothetical protein DSY1492 [Desulfitobacterium hafniense Y51]
 gi|89333686|dbj|BAE83281.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 519

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 107/337 (31%), Gaps = 53/337 (15%)

Query: 131 GLLYKICKNFSGIE---LHPDTVPDRVMSNIYEH----LIRRFGSEVSEGA--EDFMTPR 181
            L+  + +N S +E   LH  T     M  I E     L+        E      + TP 
Sbjct: 1   MLIDDLLENVSDLEGQILHLKTALSLPMDYIEEQDLLGLLYMSLQNAGERKSRGVYYTPL 60

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTL--YDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
            VV           D++    P +   +   DP CGTG FL     ++ +          
Sbjct: 61  AVVK----------DSVDHLEPFLHEKIRLLDPCCGTGNFLMHVYKYIKNLDG------- 103

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G ++ P + ++    M +   ++D    L KN      L++   +   F   + NP
Sbjct: 104 --IYGYDISPLSVSLTRINMAL-ISKTDNLEVLYKNFLCKDPLAR--KSNLEFDVIIGNP 158

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+G  ++ +     K                    ++                GG  + V
Sbjct: 159 PWGFNYDAEARQALK-----------KAYVSARKKTVESFAVFTEYALKTAIDGGIVSFV 207

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEER 418
           L  S L           +R +L+++  I+  +    D F           L  +    E 
Sbjct: 208 LPQSLL----NVKIHQPLRDYLVDHAKIKR-IRYWDDAFDGVQCPAMALTLQKKHQGFEI 262

Query: 419 RGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQI 452
           +G   + N+     +I  E         + DD+   I
Sbjct: 263 KGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEISLI 299


>gi|307299102|ref|ZP_07578904.1| adenine specific DNA methyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915527|gb|EFN45912.1| adenine specific DNA methyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1028

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 60/402 (14%), Positives = 110/402 (27%), Gaps = 54/402 (13%)

Query: 40  LLR----RLECALEPTRSAVREK-YLAFGG---SNIDLESFVKVAGYSFYNTSEYSLSTL 91
            LR    R+E   E   S   E  Y AF     S++ +E F  +   +       + +  
Sbjct: 173 FLRDEIIRVELESENADSEDLEGFYEAFKDYLISDLTIEGFADLYSQTITYGLFAARTRA 232

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------KAGLLYKICKNFSGIEL 145
            +   R    +YI         +F+          +E       A L     +       
Sbjct: 233 TNGFNRQLAYTYIPKSIGILSDVFQYISMGKISRSMEWMVDDISAILATADVRGILDRFY 292

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFKES 202
           H     D ++ + YE  +  +     E    + TP  VV        ++L          
Sbjct: 293 HEGKGSDPII-HFYETFLAEYDPSTREKRGVYYTPEPVVSYIVRSLNIILKEKFGKADGF 351

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------KIPPILVPHGQELEPETH 252
                T+ DP  GT  FL  A     +  S            +   +   +  EL    +
Sbjct: 352 ASEGVTVLDPAAGTMTFLAQAAKLAVEEYSQKYGEGMVPGLIRDHILKDFYAFELMMAPY 411

Query: 253 AVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH----------------- 293
           A+    M   +  L      D    +   + L  +     ++                  
Sbjct: 412 AIGHMKMSFFLEELGYRMEDDERFKLYLTNALDMEEHGQAKYVGTTSLAQESELAGQVKK 471

Query: 294 -----YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN--KL 346
                  L NPP+        + + +E K        P   +         +      + 
Sbjct: 472 EEDILVILGNPPYSGHSSNKGNWISEEIKRYFFSDGKPLGERNPKWLQDDYVKFIRFAQW 531

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           ++     G   IV + S L N         + +   E  +++
Sbjct: 532 KIESAKKGIVGIVTNHSYLENATFRGMRKSLMKTFDEIFILD 573


>gi|119511095|ref|ZP_01630214.1| helicase domain protein [Nodularia spumigena CCY9414]
 gi|119464266|gb|EAW45184.1| helicase domain protein [Nodularia spumigena CCY9414]
          Length = 1004

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 104/363 (28%), Gaps = 34/363 (9%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKA 113
           + A      D+         S ++  E  +  + + +   N+ +      +N      + 
Sbjct: 182 FEAARNKFWDICKESINPEISLFDIREMMIQHILTEDIFLNIFNESQFHRENNVARELQG 241

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +   F   +           Y      +   ++      + +  +YE+  + +  + ++ 
Sbjct: 242 VISTFFTGNLKRNTLGTIDRYYAVIRRTAANIYNHQEKQKFLKALYENFYKAYNPKAADR 301

Query: 174 AEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                TP ++V      +         K        + DP  GTG F+T+ ++++     
Sbjct: 302 LGIVYTPNEIVRFMIESVDFLVHQNFGKLLADKDVEILDPATGTGTFITELIDYLPQHSL 361

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
            +K    +  H  E+    + +    +     +     +  +NI    TL    F GK+ 
Sbjct: 362 EYKYKHEI--HCNEVAILPYYIANLNIEYTYKQKMGVYEEFENICFVDTLDHTSFAGKQM 419

Query: 293 H---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                                   + NPP+  K E   D                   K 
Sbjct: 420 DLFAMSVENTARIKRQNDRSISVIIGNPPYNAKQENFNDNNANRTYAAIDKLIKESYVKY 479

Query: 332 SDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           S      +++                 G  A V +SS + +         + +   E  +
Sbjct: 480 SKAQNNIVLYDMYTRFIRWASDRLGKNGIIAFVSNSSFIDSITYDGFRKVVAKEFNEIYV 539

Query: 387 IEA 389
           I+ 
Sbjct: 540 IDT 542


>gi|329766471|ref|ZP_08258015.1| hypothetical protein Nlim_1825 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137070|gb|EGG41362.1| hypothetical protein Nlim_1825 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 733

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/455 (13%), Positives = 132/455 (29%), Gaps = 98/455 (21%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +++      ++   +W+  + L G    +++ +++L      +L    +          L
Sbjct: 129 ISKKQLPIENVQKRLWRIFDILRGHIDASEYLEIVL-TLFYVKLIDETKFDNQIFSNLGL 187

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                   L     V   +    S   L  L      N L +                  
Sbjct: 188 EKKSQIDQLSKLFTVDESNLDTFSLEKLEKLDPNELTNLLYA------------------ 229

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                            + FS  + +PD            + + +F  ++   +     P
Sbjct: 230 ----------------VREFSISQTNPDAWN---------YAVFKFQEQLGFKSNVNSLP 264

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V       +    +    +   +     D    +G  + D +N + D   H      L
Sbjct: 265 ESVTGFIYQYITTGGNTEDLKFRNIAFGFLD----SGKIIFDFLNFITD--DHDFSQKQL 318

Query: 241 VPHGQ------ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             + +      E       +    + + RL+     +            +D+   ++F  
Sbjct: 319 EEYAEQNLSIIEPNITKIKIVKLLLALSRLKVQSHIE----------HPEDIHFERKFDC 368

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++ PPF  K ++    VE+  +N                      H   K+      GG
Sbjct: 369 IVTQPPFNWKIQR-ATRVERNFEN----------------------HELIKMIELVRDGG 405

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
               +L  S LF+  A +     R  +  N  I  I+ LP+ +    +I   + +L  + 
Sbjct: 406 FLVAILPPSFLFSNDARNT----REIISNNCYIRGIIHLPS-ILQTISIRPVMLLLQKKY 460

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            ++   K        ++ S  +   KR    DD+ 
Sbjct: 461 ADDNPIKEN----YKVFMSDIDINLKRHERFDDRI 491


>gi|77164667|ref|YP_343192.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254434661|ref|ZP_05048169.1| hypothetical protein NOC27_1592 [Nitrosococcus oceani AFC27]
 gi|76882981|gb|ABA57662.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|207090994|gb|EDZ68265.1| hypothetical protein NOC27_1592 [Nitrosococcus oceani AFC27]
          Length = 129

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               + N  W   +   G      +   IL    ++ +       R   +E +  +G  +
Sbjct: 5   QQKDINNAAWAACDTFRGVVDPAQYKDYILVMLFVKYISDVW---RDHYQEYHRHYGDDD 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             +    K+A   F   S        +  T       + SF  +  +++E 
Sbjct: 62  ARIRR--KLARERFVLPSVEITENRQNEKTGKEATIVVDSFMADFYSLYER 110


>gi|157159784|ref|YP_001457102.1| DNA methylase family protein [Escherichia coli HS]
 gi|157065464|gb|ABV04719.1| putative DNA Methylase family [Escherichia coli HS]
          Length = 402

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPP 350
           F   + NPPF     +D    +      E+G      + K     ++F+  +   L+   
Sbjct: 102 FDVAVCNPPFTLPEWRD----DYFKIISEIGADKYISVSKYVPAEIIFISQVIRFLK--- 154

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG A I+L        +       +RR+LL    I  ++ LP ++F RT   T++ I 
Sbjct: 155 -KGGEAGIILPDGIFTARKFIG----LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 209

Query: 411 SNRKTEERRGKVQLI 425
           + +     + ++  I
Sbjct: 210 NKKIMPHHKIQLHCI 224


>gi|301019050|ref|ZP_07183262.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
 gi|299882408|gb|EFI90619.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
          Length = 402

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPP 350
           F   + NPPF     +D    +      E+G      + K     ++F+  +   L+   
Sbjct: 102 FDVAVCNPPFTLPEWRD----DYFKIISEIGADKYISVSKYVPAEIIFISQVIRFLK--- 154

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG A I+L        +       +RR+LL    I  ++ LP ++F RT   T++ I 
Sbjct: 155 -KGGEAGIILPDGIFTARKFIG----LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 209

Query: 411 SNRKTEERRGKVQLI 425
           + +     + ++  I
Sbjct: 210 NKKIMPHHKIQLHCI 224


>gi|323466883|gb|ADX70570.1| Possible site-specific DNA-methyltransferase (Adenine-specific)
           [Lactobacillus helveticus H10]
          Length = 350

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 102/321 (31%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      +     S     L  D +  +  + ++  L 
Sbjct: 42  SFTEALVETFD--NLEQGKIKVENGAPDEQTVAELSKKYQALDYDEISQKDKAQVFTFLT 99

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DPT GTG  L   
Sbjct: 100 LKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKIEIVDPTIGTGILLFSI 152

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +   + +     +      S   
Sbjct: 153 ISQLKALNH---SKDNYQLVGIDNDEEMLNLADVAAHLNDFDIELYCQDALMPWMCSNP- 208

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         V++  KN E  R   G    S   +L +  + 
Sbjct: 209 ---------DVVISDLPIGYY------PVDENAKNFE-NRAEKGH---SFAHLLLIEQII 249

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 250 KNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 301

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              +    N   + +  +V L
Sbjct: 302 QKSILFFQNHGEDAKASEVLL 322


>gi|322368519|ref|ZP_08043087.1| hypothetical protein ZOD2009_03522 [Haladaptatus paucihalophilus
           DX253]
 gi|320551803|gb|EFW93449.1| hypothetical protein ZOD2009_03522 [Haladaptatus paucihalophilus
           DX253]
          Length = 816

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 44/263 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEG------------AEDFMTPRDVVHLATALLL 192
           L  D++  R +   YE  +         G            A  + TP +VV  A +  L
Sbjct: 109 LAYDSLSFRRLGGAYERSLDYVPEMEDGGIRLTGDATRRVSAGAYYTPNEVVEYAVSRAL 168

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQEL 247
              +            + DP  G+G FLT A++ +A+          +        G ++
Sbjct: 169 HGREDA---------RVIDPAMGSGNFLTCAIDRLAESRDEQSERARQFVAENRIFGVDV 219

Query: 248 EPETHAVCVAGMLI-RRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +P    +  + +     +   D              +    F G  F   + NPP+ +  
Sbjct: 220 DPLAVELARSAVWFETGVWPDDTLVVGDALASNPEWMDVAGFDGDGFDAVVGNPPYVRSR 279

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 +  E K+    R+         GS    +    ++      GGR + ++ +   
Sbjct: 280 H-----LPAERKDDLRERYD-----TVTGSFDLYVPFVERM---AELGGRVSCIVPNK-- 324

Query: 366 FNGRAGSGESEIRRWLLENDLIE 388
               A  G     R L E+ L+E
Sbjct: 325 -WTTARYGRPLRNRLLDEHRLVE 346


>gi|21914203|gb|AAM81323.1|AF522187_1 BpmI endonuclease-methyltransferase fusion protein type IIG
           [Bacillus pumilus]
          Length = 1009

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 67/468 (14%), Positives = 124/468 (26%), Gaps = 101/468 (21%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            L+++E   E       +     G  +++      +    F    E        T     
Sbjct: 193 FLQQIENWREKLAKTAIKNNTELGEEDVNFIVQRLLNRIIFLRVCEDRTIEKYETIKSIK 252

Query: 100 LESYIASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIEL-----HPDTVPD 152
               +      +   F    FDF      LE       + + FS +           V  
Sbjct: 253 NYEELKDLFQKSDRKFNSGLFDFIDDTLLLEVEIDSNVLIEIFSDLYFPQSPYDFSVVDP 312

Query: 153 RVMSNIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++S IYE  + +                EV+       TP+ +V       L P     
Sbjct: 313 TILSQIYERFLGQEIIIESGGTFHITESPEVAASNGVVPTPKIIVEQIVKDTLTPLTEGK 372

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------------- 240
           K +      + D  CG+G FL  + + + +      I   +                   
Sbjct: 373 KFNELCNLKIADICCGSGTFLISSYDFLVEKVMEKIIEENIDDSDLVYETEEGLILTLKA 432

Query: 241 -------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---------- 283
                     G ++ P    V    +L++ LE +    ++  I +               
Sbjct: 433 KRNILENNLFGVDVNPYAVEVAEFSLLLKLLEGENEASVNNFIHEHEDKILPDLTSIIKC 492

Query: 284 -----------------------------------KDLFTGKRFHYCLSNPPFGK-KWEK 307
                                               D+     F   + NPP+ + +  K
Sbjct: 493 GNSLVDNKFFEFMPESLEDDEILFKANPFEWEEEFPDIMANGGFDAIIGNPPYVRIQNMK 552

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                E E+   +   +     +  D   LF+      L    N  G    ++       
Sbjct: 553 KYSPEEIEYYQSKDSEYTVAKKETVDKYFLFIERALILL----NPTGLLGYIIPHKFFIT 608

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRK 414
                G  E+R+++ E   I  I+    T +F      T + I+   K
Sbjct: 609 ----KGGKELRKFIAEKHQISKIINFGVTQVFPGRATYTAILIIQANK 652


>gi|323160769|gb|EFZ46704.1| type I restriction-modification system DNA methylase domain protein
           [Escherichia coli E128010]
          Length = 40

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           EKD E+G VGYEINFNR+FYQY P R+L  ID E K +
Sbjct: 3   EKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRETKSM 40


>gi|69244346|ref|ZP_00602814.1| type I restriction-modification system methylation subunit
          [Enterococcus faecium DO]
 gi|68196532|gb|EAN10959.1| type I restriction-modification system methylation subunit
          [Enterococcus faecium DO]
          Length = 134

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 21/57 (36%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
          A L   ++  A++L      +++   +L     + L   L      + ++ L    +
Sbjct: 3  AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDT 59


>gi|124004980|ref|ZP_01689823.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
 gi|123989658|gb|EAY29204.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
          Length = 503

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 33/259 (12%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           ++++          D+ TP  ++     +L D D    K    + + + DP CG G FL 
Sbjct: 1   MLKKSADIQGYI--DYSTPSFIIE---KILDDIDFGQQKVI--LGKKILDPACGAGRFLI 53

Query: 222 DAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +A   V        I   L   +G +++      C+  M    ++    +   K  +  S
Sbjct: 54  EAAKRVIAISPKEDIVNNLEQLYGWDIDGAAIEECIENM-NHLIKPLNIQVNWKIYELDS 112

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               +     RF + + NPP+ +    D+   +    +              +GS    M
Sbjct: 113 LHYIEHPEEVRFDFIVGNPPYIRIQHLDETQRKYIQTHYSF---------CKNGSTDIYM 163

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE------SEIRRWLLENDLIEAIVALP 394
                        G   ++  ++  +   A +          IR+ +     I       
Sbjct: 164 AFFELCHKLLTPTGVCGLITPNTYFYTQTAQAMRDAFAHLKNIRQ-ITNYGKI------- 215

Query: 395 TDLFFRTNIATYLWILSNR 413
             +F      + + I + +
Sbjct: 216 -QVFQNATTYSAITIFTKK 233


>gi|260558487|ref|ZP_05830683.1| type I restriction-modification system methylation subunit
          [Enterococcus faecium C68]
 gi|260075661|gb|EEW63967.1| type I restriction-modification system methylation subunit
          [Enterococcus faecium C68]
          Length = 134

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 21/57 (36%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
          A L   ++  A++L      +++   +L     + L   L      + ++ L    +
Sbjct: 3  AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDT 59


>gi|126700374|ref|YP_001089271.1| putative DNA modification methylase [Clostridium difficile 630]
 gi|115251811|emb|CAJ69646.1| putative N6 adenine-specific DNA methyltransferase, N12 class
           [Clostridium difficile]
          Length = 577

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 122/355 (34%), Gaps = 58/355 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +   +  + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P 
Sbjct: 1   MDDISQDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP- 56

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQ 245
               + D +CG G FL +  + + D                       H+       +G 
Sbjct: 57  ---RILDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGA 113

Query: 246 ELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +++ +  ++    +  +++ +D    D+  N+    +L K      +F Y + NPP+   
Sbjct: 114 DIDEKAISILKDSLTNKKVVNDLDESDIKINLFCCDSLKKKWRY--KFDYIVGNPPYIGH 171

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +K   +   +                  +        K+      GG  +++     
Sbjct: 172 KKLEKKYKKFLLEK-------YSEVYKDKADL--YFCFYKKIIDILKQGGIGSVITPRYF 222

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           L +        ++R ++  N  ++ IV  L  ++F    +++ +     +KT+E    V 
Sbjct: 223 LESLSG----KDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVF 278

Query: 424 LINATDLWT-------------SIRNEGKKRRIINDDQR--RQILDIYVSRENGK 463
            I   D+                  +    +R+++D+     +  + + ++   K
Sbjct: 279 KIKNEDICINKFETLEELLKSSKFEHFNINQRLLSDEWILVNKDDETFYNKIQEK 333


>gi|300949931|ref|ZP_07163890.1| N-6 DNA Methylase [Escherichia coli MS 116-1]
 gi|300450699|gb|EFK14319.1| N-6 DNA Methylase [Escherichia coli MS 116-1]
          Length = 372

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPP 350
           F   + NPPF     +D    +      E+G      + K     ++F+  +   L+   
Sbjct: 72  FDVAVCNPPFTLPEWRD----DYFKIISEIGADKYISVSKYVPAEIIFISQVIRFLK--- 124

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG A I+L        +       +RR+LL    I  ++ LP ++F RT   T++ I 
Sbjct: 125 -KGGEAGIILPDGIFTARKFIG----LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 179

Query: 411 SNRKTEERRGKVQLI 425
           + +     + ++  I
Sbjct: 180 NKKIMPHHKIQLHCI 194


>gi|307286626|ref|ZP_07566716.1| conserved domain protein [Enterococcus faecalis TX0109]
 gi|307288053|ref|ZP_07568071.1| conserved domain protein [Enterococcus faecalis TX0109]
 gi|306500967|gb|EFM70281.1| conserved domain protein [Enterococcus faecalis TX0109]
 gi|306502255|gb|EFM71537.1| conserved domain protein [Enterococcus faecalis TX0109]
          Length = 55

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
          A L   ++  A++L      +++   +L     + L   L      + ++ L 
Sbjct: 3  AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLE 55


>gi|255101928|ref|ZP_05330905.1| putative DNA modification methylase [Clostridium difficile
           QCD-63q42]
 gi|255307797|ref|ZP_05351968.1| putative DNA modification methylase [Clostridium difficile ATCC
           43255]
          Length = 577

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 106/302 (35%), Gaps = 43/302 (14%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +   +  + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P 
Sbjct: 1   MDDISQDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP- 56

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQ 245
               + D +CG G FL +  + + D                       H+       +G 
Sbjct: 57  ---RILDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGA 113

Query: 246 ELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +++ +  ++    +  +++ +D    D+  N+    +L K      +F Y + NPP+   
Sbjct: 114 DIDEKAISILKDSLTNKKVVNDLDESDIKINLFCCDSLKKKWRY--KFDYIVGNPPYIGH 171

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +K   +   +                  +        K+      GG  +++     
Sbjct: 172 KKLEKKYKKFLLEK-------YSEVYKDKADL--YFCFYKKIIDILKQGGIGSVITPRYF 222

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           L +        ++R ++  N  ++ IV  L  ++F    +++ +     +KT+E    V 
Sbjct: 223 LESLSG----KDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVF 278

Query: 424 LI 425
            I
Sbjct: 279 KI 280


>gi|57118040|gb|AAW34165.1| unknown [Campylobacter jejuni]
          Length = 556

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 132/416 (31%), Gaps = 82/416 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLN--------------DPTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 502

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
                  D++      ++ +       G   IK  +       LD     ++  +I
Sbjct: 503 -------DVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALEI 551


>gi|162958010|ref|YP_001621442.1| RemS [Serratia entomophila]
 gi|155382597|gb|ABU23792.1| RemS [Serratia entomophila]
          Length = 256

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D ++  I+  L        +     F TP +V  L  AL L       +  P +  +L +
Sbjct: 105 DDLLGGIFMEL-----EFGTSSMGQFFTPSEVSRLIAALTLGDHVKELEYRPFI--SLDE 157

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PT G+GG +  A  H+   G  +    +L     +++P    +C   + +  L +     
Sbjct: 158 PTSGSGGMVIAAAEHLLSKG--YNPQQVLYIRCTDIDPLAADMCFIQLALLGLPASVYTG 215

Query: 272 LSKNIQQGSTLSKDLF 287
            +  ++        ++
Sbjct: 216 NALTMKMSKVRHTPIY 231


>gi|110634699|ref|YP_674907.1| N-6 DNA methylase [Mesorhizobium sp. BNC1]
 gi|110285683|gb|ABG63742.1| N-6 DNA methylase [Chelativorans sp. BNC1]
          Length = 1038

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 101/380 (26%), Gaps = 76/380 (20%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT------ 149
            +  L        ++        D  +   ++    +       FSG ++          
Sbjct: 231 AKAALYCLFRQLGNDFNGDLFSDDLDAECRKITNKHIEILD-DFFSGTDMRHGQRAFWPY 289

Query: 150 ----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
               +P   +S IYEH ++       +    F TPR        ++L  D AL    P +
Sbjct: 290 DFGYIPIETISAIYEHFLKD----EDQRDGAFYTPR----FLAEVVL--DSALEDVGPLL 339

Query: 206 IRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETH 252
            +   DP CG+G    G                +                 G +  P   
Sbjct: 340 GKKFLDPACGSGIFLVGLFIRMAEEWKQANPKARYGRRARELMQVLRDSLFGVDKNPIAC 399

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQG--------------------------STLSKDL 286
            +    + +  L+     D+ +  ++G                              K  
Sbjct: 400 RIAAFSLYLAYLDQLTPSDIQQLQKKGRALPLLTWDHAAPSTDEASSRNIHRVDFFQKGA 459

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              +     L NPP+G     D           +          + D  +        K 
Sbjct: 460 PLPQDADLVLGNPPWG-SIAGDGTPAGIWCAESK--------KPLPDKQIAV--AFIWKA 508

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNI 403
               +  G+   +L    L N   G    E +R  +    +  ++ L      LF     
Sbjct: 509 AEHASQTGKVCFLLPHGVLVN--HGPVAVEFQRAWVRQHTLRRVLNLADLRHFLFRDAIH 566

Query: 404 ATYLWILSNRKTEERRGKVQ 423
              +   +  + + R G++Q
Sbjct: 567 PAIVVEYAQGEPDLRAGRIQ 586


>gi|308273431|emb|CBX30033.1| hypothetical protein N47_D28420 [uncultured Desulfobacterium sp.]
          Length = 1032

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 107/360 (29%), Gaps = 67/360 (18%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           +F   +     +P   +S +Y+  +         G   F TP  +V+         D+  
Sbjct: 279 DFKAYDF--QHIPIETLSMVYQQFLH--TEGKGRGQGAFYTPIHLVNFIL------DELD 328

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-----------GQEL 247
            K       T+ DP CG+G FL      + +  +       L P            G E+
Sbjct: 329 TKRPLQKGMTVLDPACGSGAFLVQCFRRLIEREAIKSPNKKLSPFTLRELLTDHIWGVEV 388

Query: 248 EPETHAVCVAGMLIRRLESDPRRDL---------------------SKNIQQGSTLSKDL 286
           + +   V    +++  L+     DL                     ++      +  +  
Sbjct: 389 DEDACGVTELSLILTLLDYVDPPDLEKPEYKKFQLPPLRDKNIFYCNQGFFDPESKWQSA 448

Query: 287 FTGKRFHYCLSNPPF---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              K + + + NPP+     +   + D    E       RF     +I++          
Sbjct: 449 KHRKGYDWIVGNPPWKKLNSEKMDNGDKYAIEWIRKNTQRFPVSSNQIAEAFAWEASQYL 508

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFR 400
           +         G   ++L +  LF         + R        +  +V    L   LF  
Sbjct: 509 SAY-------GLFGMLLPAGTLFKTNG----KKFREKFFSTLRVWCVVNFANLRHLLFQD 557

Query: 401 TNIATYLWILSN-RKTEERRGKVQLI--NATDLWTSIRNEGKKRRII-----NDDQRRQI 452
                  +  SN  +  E   ++      A +  T    E +K   +     N D+ ++I
Sbjct: 558 AVNPAAAFFYSNINEINEDLSQIITFAPFAVNQLTRFEAEKQKHNKLWTVLVNADEIKEI 617


>gi|258652906|ref|YP_003202062.1| type I restriction-modification system methyltransferase
           subunit-like protein [Nakamurella multipartita DSM
           44233]
 gi|258556131|gb|ACV79073.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Nakamurella multipartita DSM
           44233]
          Length = 257

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 16/140 (11%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           V   ++  +Y  L         +    F TP D+  L  A+            P     +
Sbjct: 124 VGGDLLGPVYSELRG---DRSRQRTGAFYTPPDLSALLAAMT----------GPRPGDRV 170

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           ++P CGTGG +  A+  + +       P        +L+P   A+    M    + +   
Sbjct: 171 FEPACGTGGMVLAAVRSMRERDLD---PNSCTWTLNDLDPVAVALASVNMAAHGVRTVHL 227

Query: 270 RDLSKNIQQGSTLSKDLFTG 289
           R      QQ +   +D  + 
Sbjct: 228 RCGDALAQQSAADGRDGLSD 247


>gi|161507252|ref|YP_001577206.1| putative modification methylase [Lactobacillus helveticus DPC 4571]
 gi|160348241|gb|ABX26915.1| putative modification methylase [Lactobacillus helveticus DPC 4571]
          Length = 333

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      +     S     L  D +  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLEQGKIKVENGAPDEQTVAELSKKYQALDYDEISQKDKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DPT GTG  L   
Sbjct: 83  LKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKIEIVDPTIGTGILLFSI 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +   + +     +      S   
Sbjct: 136 ISQLKALNH---SKDNYQLVGIDNDEEMLNLADVAAHLNDFDIELYCQDALMPWMCSNP- 191

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         V++  KN E  R   G    S   +L +  + 
Sbjct: 192 ---------DVVISDLPIGYY------PVDENAKNFE-NRAEKGH---SFAHLLLIEQIV 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 KNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   + +  +V L
Sbjct: 285 QKSILVFQNHGEDAKASEVLL 305


>gi|254976352|ref|ZP_05272824.1| putative DNA modification methylase [Clostridium difficile
           QCD-66c26]
 gi|255093737|ref|ZP_05323215.1| putative DNA modification methylase [Clostridium difficile CIP
           107932]
 gi|255315489|ref|ZP_05357072.1| putative DNA modification methylase [Clostridium difficile
           QCD-76w55]
 gi|255518152|ref|ZP_05385828.1| putative DNA modification methylase [Clostridium difficile
           QCD-97b34]
 gi|255651268|ref|ZP_05398170.1| putative DNA modification methylase [Clostridium difficile
           QCD-37x79]
 gi|260684332|ref|YP_003215617.1| putative DNA modification methylase [Clostridium difficile CD196]
 gi|260687991|ref|YP_003219125.1| putative DNA modification methylase [Clostridium difficile R20291]
 gi|260210495|emb|CBA64984.1| putative DNA modification methylase [Clostridium difficile CD196]
 gi|260214008|emb|CBE06133.1| putative DNA modification methylase [Clostridium difficile R20291]
          Length = 577

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 122/355 (34%), Gaps = 58/355 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +   +  + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P 
Sbjct: 1   MDDISQDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP- 56

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQ 245
               + D +CG G FL +  + + D                       H+       +G 
Sbjct: 57  ---RILDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGA 113

Query: 246 ELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +++ +  ++    +  +++ +D    D+  N+    +L K      +F Y + NPP+   
Sbjct: 114 DIDEKAISILKDSLTNKKVVNDLDESDIKINLFCCDSLKKKWRY--KFDYIVGNPPYIGH 171

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +K   +   +                  +        K+      GG  +++     
Sbjct: 172 KKLEKKYKKFLLEK-------YSEVYKDKADL--YFCFYKKIIDILKQGGVGSVITPRYF 222

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           L +        ++R ++  N  ++ IV  L  ++F    +++ +     +KT+E    V 
Sbjct: 223 LESLSG----KDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVF 278

Query: 424 LINATDLWT-------------SIRNEGKKRRIINDDQR--RQILDIYVSRENGK 463
            I   D+                  +    +R+++D+     +  + + ++   K
Sbjct: 279 KIKNEDICINKFETLEELLKSSKFEHFNINQRLLSDEWILVNKDDETFYNKIQEK 333


>gi|296270474|ref|YP_003653106.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296093261|gb|ADG89213.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 689

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 99/326 (30%), Gaps = 68/326 (20%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+     A           + DP    G  L   +  +++           V  G E
Sbjct: 188 LARLIAGLSGAREHAEEFGTVRVADPAARAGDLLVAVLGQLSE-------DSFPVFTGAE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +P    +    +++  +                 +             ++  P+     
Sbjct: 241 PDPFLARIARRRLVVHGI-----------PPHDIDIRCPGDPPLPADVLVTRLPYV---- 285

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                +E+  +   L         ++ G    ++             G A +++   P +
Sbjct: 286 ----PLEERPQENPLATVKELTDGLAPGQTTVVL-------------GPADVLVDGLPPY 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLI 425
              A       R  LL +  +EA++ LP  L  FR    T LW+L   +    +G+V L 
Sbjct: 329 RPAA-----RTRNELLASGRVEAVIHLPGGLVPFRPGYQTALWVLRREEPSPWQGRVLLA 383

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQIL-DIYVSRENG----KFSR------MLDYRTFG 474
           + +D            R + DD    ++ D+   R +G      SR       +   T  
Sbjct: 384 DVSD------------RALTDDVVETLIWDVVTWRRDGYQPNDHSRAIAVQVAVSSLTSS 431

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEA 500
             R+   RP  +  +  K  +AR+  
Sbjct: 432 RVRLTARRPPAIREVAAKETIARVYD 457


>gi|282882760|ref|ZP_06291367.1| modification methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297421|gb|EFA89910.1| modification methyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 74/221 (33%), Gaps = 56/221 (25%)

Query: 207 RTLYDPTCGTGGFLTDAM-NHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLI 261
             + D   G+G FL  AM N + + G       +       +G E + E  A+  A MLI
Sbjct: 1   MKILDHCAGSGAFLVKAMANMIKEVGGVNTKEAEDIKQNKLYGIEFDREIFALACANMLI 60

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                   +D   N++Q  T  K+       K     L NPP+ +K              
Sbjct: 61  H-------KDGKTNLEQFDTREKEACKWIKSKNITKVLMNPPYERK-------------- 99

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                   G  K           +   +      G + A +L    L        E +  
Sbjct: 100 -------YGCKK-----------IVTNVLDNVPAGIKCAFILPDKKL--------EKDRM 133

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
             LL+   ++ I+ LP  LF    + T +++    K ++ +
Sbjct: 134 HSLLKKHTLDMIIKLPEKLF-DAGVTTSVFVFETGKPQKDK 173


>gi|329667616|gb|AEB93564.1| adenine-specific DNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 333

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 102/333 (30%), Gaps = 42/333 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
            T   +  ++   SFS      F+  +  +   ++E      +     +    +L  + +
Sbjct: 12  QTAIEHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDYENL 69

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +   I+  L  +  ++ +       TP  V  +   +         K  P   +T+ 
Sbjct: 70  PRALKVQIFTLLALKAITQDASDYNLMPTPSVVATIIALI-------WQKIVPTGKKTVV 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  GTG  L   +  +           ++    +E              +  L      
Sbjct: 123 DPAIGTGNLLYSVIRQLIQENHSQNNYNLIGIDNEES-------------LLDLADIGAH 169

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I      + D +  ++    LS+ P G     +     + H              
Sbjct: 170 LEDLKIDLYCQDALDPWMIEKADIVLSDLPVGYYPLDNNAQRFENH----------AKEG 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S    LF+  + N L+      G A +V+          G G +E   WL +   I+AI
Sbjct: 220 HSFAHTLFIEQIVNNLKR----DGFAFLVVPRLLF----TGKGSTEFMTWLAKKVNIQAI 271

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V LP ++F        + +  N        +V 
Sbjct: 272 VDLPDNMFSSQIQQKSILVFQNHGDHAVEREVL 304


>gi|119490856|ref|ZP_01623139.1| type I restriction-modification system, M subunit, putative
           [Lyngbya sp. PCC 8106]
 gi|119453674|gb|EAW34833.1| type I restriction-modification system, M subunit, putative
           [Lyngbya sp. PCC 8106]
          Length = 1045

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 93/301 (30%), Gaps = 71/301 (23%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           H D +P   +S+IYE  + +       G     TP  +V      +L        +S   
Sbjct: 328 HFDVIPLEFISSIYEEFVSK-----KSGTGVHYTPEHIVDFVLDGVLP------WDSQEW 376

Query: 206 IRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPH-------GQELEPETHAVC 255
              + DP CG+G FL  A   +    +      I P  + +       G +++ +   V 
Sbjct: 377 DIKILDPACGSGIFLVKAFQRLIYRWEQAHPRTIQPSDLKYLLENNLFGVDVDAQAVRVA 436

Query: 256 VAGMLIRRLESDPRRDLSKNI------QQGSTLSKDLFTGK-----------RFHYCLSN 298
              + +  L+    +   +N       ++   ++ D F              ++   + N
Sbjct: 437 SFSLYLTMLDKVEPQYYWENEFRFPRLRERQLVAADFFKEDKEGFRSVQDAAKYDLVVGN 496

Query: 299 PPFG--------KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            P+G        K W  D   +         G  GP     +                  
Sbjct: 497 APWGRNTVTPAAKSWAGDVWTI-------TYGNIGPLFLPKAAA--------------LT 535

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYL 407
             GG+ A++  +  L   + G+   E R  L     IE IV L      LF        +
Sbjct: 536 KPGGQVAMMQPALALIFNQVGTA-QEFRARLFSEFKIEEIVNLSALRFGLFKDAISPACI 594

Query: 408 W 408
            
Sbjct: 595 I 595


>gi|260102551|ref|ZP_05752788.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083645|gb|EEW67765.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 340

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      +     S     L  D +  +  + ++  L 
Sbjct: 32  SFTEALVETFD--NLEQGKIKVENGAPDEQTVAELSKKYQALDYDEISQKDKAQVFTFLT 89

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DPT GTG  L   
Sbjct: 90  LKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKIEIVDPTIGTGILLFSI 142

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +   + +     +      S   
Sbjct: 143 ISQLKALNH---SKDNYQLVGIDNDEEMLNLADVAAHLNDFDIELYCQDALIPWMCSNP- 198

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         V++  KN E  R   G    S   +L +  + 
Sbjct: 199 ---------DVVISDLPIGYY------PVDENAKNFE-NRAEKGH---SFAHLLLIEQII 239

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 240 KNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 291

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   + +  +V L
Sbjct: 292 QKSILVFQNHGEDAKASEVLL 312


>gi|328461769|gb|EGF34005.1| putative modification methylase [Lactobacillus helveticus MTCC
           5463]
          Length = 333

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +      ++E      +     S     L  D +  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLEQGKIKVENGAPDEQTVAELSKKYQALDYDEISQKDKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DPT GTG  L   
Sbjct: 83  LKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKIEIVDPTIGTGILLFSI 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + E   +      +   + +     +      S   
Sbjct: 136 ISQLKALNH---SKDNYQLVGIDNDEEMLNLADVAAHLNDFDIELYCQDALIPWMCSNP- 191

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         V++  KN E  R   G    S   +L +  + 
Sbjct: 192 ---------DVVISDLPIGYY------PVDENAKNFE-NRAEKGH---SFAHLLLIEQII 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 KNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   + +  +V L
Sbjct: 285 QKSILVFQNHGEDAKASEVLL 305


>gi|268324537|emb|CBH38125.1| probable DNA methylase [uncultured archaeon]
          Length = 1016

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 123/476 (25%), Gaps = 112/476 (23%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRN 98
            L+ +E   E     +  +        ++      +    F    E   +   G   T+ 
Sbjct: 199 FLKEIESWRELLAKNIALRNPNVSIYELNYAVQKIIDRIIFLRICEDRGIEPYGQLQTKA 258

Query: 99  NLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELH-------PD 148
                     ++ +     +D   F     R+  A  +           L+         
Sbjct: 259 EAGDVYMHLLNHFRLAESKYDSGIFDFETDRITPALTIDDKVLKMIIQSLYYPKSPYEFS 318

Query: 149 TVPDRVMSNIYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPD 195
            +   ++ N+YE  + +                EV +    + TP+ +V       +   
Sbjct: 319 VLGVEILGNVYEQFLGKVIRLTAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVENTVGKL 378

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------------ 243
            A           + DP CG+G FL  A  ++        +      H            
Sbjct: 379 IAGKTPEEIAHIKILDPACGSGSFLIGAYTYLLRYHLDWYVNNKPKKHKEAVFQVKADEW 438

Query: 244 ----------------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNI----------- 276
                           G +++ +   V    +L++ LE + R  + + +           
Sbjct: 439 YLTTAEKKRILLDNIFGVDIDSQAVEVTKMSLLLKVLEHESRESIDQQMKLGLEGVLPNL 498

Query: 277 -------------------QQGSTLSK---------DLFTGKR----------FHYCLSN 298
                              QQGS  ++         D    ++          F   + N
Sbjct: 499 GDNIKCGNSLIGPEYYESEQQGSLFNEEEMRRVNVFDWEDERKGFGKILKKGGFDAVIGN 558

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+ +          KE  + E+  +       S G+    +    +     N  GR   
Sbjct: 559 PPYVRI------QTMKEWASTEVEFYKKHHASASKGNYDIYVVFVERALKLLNVRGRMGY 612

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNR 413
           +L                +R  +     ++ IV      +F      T L  L   
Sbjct: 613 ILPHKFFQAKYG----QPLRELIARGKHLDKIVHFGDQQVFAGATTYTCLLFLEKG 664


>gi|255535170|ref|YP_003095541.1| adenine specific DNA methyltransferase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341366|gb|ACU07479.1| adenine specific DNA methyltransferase [Flavobacteriaceae bacterium
           3519-10]
          Length = 1063

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/441 (14%), Positives = 126/441 (28%), Gaps = 96/441 (21%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRV 154
             NL      F          FD    +  + +  +   +  +   I       T  +  
Sbjct: 239 AANLIPKSNPFLRKLFQDIAGFDLDDRLVWIVEELVQIFLATDVEKIMKNFGKATKMEDP 298

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT------ 208
           + + YE  + ++   + +    + TP+ +V+     + D     F    G+  T      
Sbjct: 299 IIHFYETFLAQYDKNLRKVRGVWYTPQPIVNFIVRAVDDILKDEFNLQQGLADTSKTKIK 358

Query: 209 -------------------------LYDPTCGTGGFLTDAMNHVADC--------GSHHK 235
                                    + DP  GTG FL + + H+             + K
Sbjct: 359 VDSQIPDARSATGFRLVEKEVHRVQILDPATGTGTFLAETVKHIHSKFKGMEGMWSKYVK 418

Query: 236 IPPILVPHGQELEPETHAVC--VAGMLIRRL---------------------ESDPRRDL 272
              I   +G EL   ++A+      ML++                         D     
Sbjct: 419 NDLIPRLNGFELLMASYAMAHLKMDMLLKETGYKSDDEQRFRIFLTNSLEEAHPDSGTLF 478

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           S  +   ST +  +         + NPP+  +       +    ++ +    G    K  
Sbjct: 479 SSWLSDESTQANKIKKETPVMVVMGNPPYSGESANKGKWIMDLMEDYKKEPGGKEKLKER 538

Query: 333 DGSML---FLMHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
           +   +   ++  +   +  +  NG G  A +     L           +R  LL+  D I
Sbjct: 539 NPKWINDDYVKFIRFAQYFINKNGTGILAFINPHGFL----DNPTFRGMRWNLLKEFDKI 594

Query: 388 EAIVALPTDL---------------F-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              + L  +L               F     ++  L++ +  K E   G+V        +
Sbjct: 595 YT-IDLHGNLKKKEISPDGSIDQNVFDIMQGVSVNLFVKTGNKKENELGQVL------HY 647

Query: 432 TSIRNEGKKRRIINDDQRRQI 452
                   K + +N++    I
Sbjct: 648 DLFGKRDFKYQFLNENNISTI 668


>gi|126659143|ref|ZP_01730282.1| type I restriction-modification system, M subunit, putative
           [Cyanothece sp. CCY0110]
 gi|126619550|gb|EAZ90280.1| type I restriction-modification system, M subunit, putative
           [Cyanothece sp. CCY0110]
          Length = 1033

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 92/301 (30%), Gaps = 60/301 (19%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D +P   +S++YE  + +      EG     TP  +V      +L  DD  +      
Sbjct: 320 SFDVIPLEFISSVYEEFVSK-----KEGQGVHYTPEFIVDFILDGVLPWDDEEWD----- 369

Query: 206 IRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPILV------PHGQELEPETHAVC 255
              + DP CG+G FL  A            + +    IL         G +++ E   V 
Sbjct: 370 -LKILDPACGSGIFLVKAYQRLIYRWEKAHNKNITSDILKSLLENNFLGVDIDREAIRVA 428

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGK-----------RFHYCLSN 298
                +  L++   R+  +N  +  TL        D F               +   L N
Sbjct: 429 SFSFYLMMLDNIDPRNYWENEVKFPTLRNKKLIAADFFAEDIEGFRTEEDSGTYDLVLGN 488

Query: 299 PPFGK----KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            P+GK    K  K+       +     G   P                 +K        G
Sbjct: 489 APWGKNSITKKAKEWTKKYNWNDCISYGNIAP--------------FFLSKAVKLTKDNG 534

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILS 411
             +++  +  L   + G    ++R  L     +  IV L      LF      T +  L 
Sbjct: 535 YISMMQPAGTLIFNQ-GDKNQQLRFKLFSETKVSEIVDLSALRFGLFKNAISPTCIITLE 593

Query: 412 N 412
           N
Sbjct: 594 N 594


>gi|227877256|ref|ZP_03995329.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256842819|ref|ZP_05548307.1| adenine-specific DNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256848883|ref|ZP_05554317.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262045785|ref|ZP_06018749.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|293380462|ref|ZP_06626529.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|295692607|ref|YP_003601217.1| adenine-specific DNA methylase [Lactobacillus crispatus ST1]
 gi|227863112|gb|EEJ70558.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256614239|gb|EEU19440.1| adenine-specific DNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256714422|gb|EEU29409.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260573744|gb|EEX30300.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|290922969|gb|EFD99904.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|295030713|emb|CBL50192.1| Adenine-specific DNA methylase [Lactobacillus crispatus ST1]
          Length = 333

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 103/321 (32%), Gaps = 42/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           SF++     F+  +  S   ++E      K     S     +  D +  +  + ++  L 
Sbjct: 25  SFTEALVETFD--NLESGKIKVENGAPDEKTVAELSQKYQAIDYDEISQKEKAQVFTFLT 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++         TP  +  +   L+        K        + DP  GTG  L   
Sbjct: 83  LKAVNDDGFDVNQMPTPPAIATVVAMLM-------HKLLKDQKMEIVDPAVGTGNLLFSI 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++ +                G + + +  ++      +  ++ +     +          
Sbjct: 136 ISQLKALNH---SKDNYQLVGIDNDEDMLSLTDVAAHLNNIDIELYHQDALMPWMCP--- 189

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       +S+ P G         V++  KN E           S   +L +  + 
Sbjct: 190 -------NADAIVSDLPVGYY------PVDENAKNFE----NQAKKGHSFAHLLLIEQII 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G A +V+  S L    +G   ++   WL +   ++AIV LP D+F     
Sbjct: 233 NNLKP----NGYAFLVVPKSIL----SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFN 284

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +  N   E +  +V L
Sbjct: 285 QKSVLVFQNHGDEAKASEVLL 305


>gi|77917738|ref|YP_355553.1| putative DNA methylase [Pelobacter carbinolicus DSM 2380]
 gi|77543821|gb|ABA87383.1| putative DNA methylase [Pelobacter carbinolicus DSM 2380]
          Length = 1022

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 99/300 (33%), Gaps = 58/300 (19%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P  ++S IYE  +    S+  +    + TPR +  L        D AL      +   +
Sbjct: 282 IPVELISGIYESFL----SDEKKEVGAYYTPRHLASLVV------DQALAHSKNILSERI 331

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGM 259
           YD  CG+G  LT A   +       +  P+              G ++      V    +
Sbjct: 332 YDGACGSGILLTTAYRRLLAYAEALRGHPLSFEERCQLLVEHIFGSDISEPACRVTAFSL 391

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFT---------------------GKRFHYCLSN 298
            +  LE     D+ +  +       DL T                      K F   LSN
Sbjct: 392 YLSLLERLQPADIEELRENSDVKLPDLNTHNLRSGKEKGNFFSDQNTFAASKSFTIFLSN 451

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+ +  + +    +   K+   G   P   + ++        +   L+     G    I
Sbjct: 452 PPWVEPKKNETLPSDLWAKSK--GVNIP-RRQTANA------FMLRALDSVSPSGKICLI 502

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKT 415
           +    P+ +  A +  + I +WL  +  +E ++    L   LF        + + S RK 
Sbjct: 503 L----PVSSFGAPTSNTFIAKWL-SHYRLETLINFGDLRKILFSTAKQPCVVAVFSPRKK 557


>gi|9622223|gb|AAF89680.1| adenine-specific methyltransferase [Bacillus sp. LU11]
          Length = 568

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 90/270 (33%), Gaps = 44/270 (16%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +      TP+ V +L  +  L+             RT+ +P  G G FL       
Sbjct: 16  ENKKDMLGQVFTPQGVANLMVSFGLNTKP----------RTILEPCFGEGVFLESIQKRK 65

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +  KI       G E++P  +    +    + +  ++    + +            
Sbjct: 66  EYVANDTKII------GVEIDPVLYERVRSKFPNLELYNMDFFDFKGV------------ 107

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                      + NPP+ ++    +      +K+  + R       IS  S L++  +  
Sbjct: 108 -------VDCVIMNPPYIRQELLREKMPRFLNKSDIITRLPLLQYPISSRSNLYVYFIIK 160

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
              +    G   AI+ ++               +++LL+N  I+AI+    D+F   ++ 
Sbjct: 161 AWSILSEKGSIIAIIPNTWMAAEYGNS-----FKKFLLQNFWIKAIIQFNKDVFPDADVE 215

Query: 405 TYLWILSNRKTEE-RRGKVQLINATDLWTS 433
           + +  LS  K  E       LIN    ++ 
Sbjct: 216 SCILYLSKEKDSEFNMRNTYLINIQKPFSK 245


>gi|167768842|ref|ZP_02440895.1| hypothetical protein ANACOL_00159 [Anaerotruncus colihominis DSM
           17241]
 gi|167669014|gb|EDS13144.1| hypothetical protein ANACOL_00159 [Anaerotruncus colihominis DSM
           17241]
          Length = 287

 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 11/196 (5%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           E+   +          YS   +       +  S    F    +   E    + +     K
Sbjct: 11  EAQKNIIRCMDILIGRYSRWEVWQDFIIMSAISIANLFDGPHREAREKEYMTRSGKYSAK 70

Query: 130 AGLLYKIC--KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              ++     +  + +E +PD      +  ++  L        +E A  F TP  V    
Sbjct: 71  EMAVFAQMLAEVVADLEHNPDQ---DFLGELFMAL-----DLGNEWAGQFFTPYSVCRAM 122

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            A +   +D   K       ++ DP CG G  L    N     G+       ++   Q++
Sbjct: 123 AA-VSYGEDLKAKIETHGWASVNDPACGAGALLVAFANECRRPGNDVNYQTSVLFVAQDI 181

Query: 248 EPETHAVCVAGMLIRR 263
           +     +C   + +  
Sbjct: 182 DFLAGCMCYIQLSLMG 197


>gi|309776103|ref|ZP_07671094.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916054|gb|EFP61803.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 248

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 18/203 (8%)

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                L   +        +  E   S +     R N+ S + +  D A+    D    S+
Sbjct: 6   DYEKKLVDLIGNPSNGRLSDREAYASFIAYAAQRLNVASLLKT--DKARIKELDRTIQSS 63

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
               E+  L++ I      ++     +   ++  I E L     S  S  +  F+TP  V
Sbjct: 64  GITKERFELIFDIL-----VDALEANMDQDLLGRICERL-----SMTSFRSGQFLTPYPV 113

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
                 +       L       I+T+ DP CGTG  L  A N + + G         + +
Sbjct: 114 SKFMAEI---NISKLDTSKQKDIQTIADPCCGTGVMLIAAANVIREKG---IPLRNYMMY 167

Query: 244 GQELEPETHAVCVAGMLIRRLES 266
            Q+++      C   + ++ +  
Sbjct: 168 AQDIDKTMALSCYVQLALQGVPG 190


>gi|290474498|ref|YP_003467378.1| hypothetical protein XBJ1_1462 [Xenorhabdus bovienii SS-2004]
 gi|289173811|emb|CBJ80593.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 228

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 22/206 (10%)

Query: 72  FVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
           F + A Y   Y       +   +     +  S             E +    TI + E+A
Sbjct: 15  FKQTARYHTRYQVFRDFCNCAMAAIHNKHCFS----------EELEQYYLK-TINKYERA 63

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +  +I + FS + L     P   + +++  L         +  + F TP  V  +   +
Sbjct: 64  DVD-RIVQLFSHVVLGLAQEPGDFLGSVFMRL-----ELGDKDLQQFFTPWSVARMMAQM 117

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            L     L +  P +  TL +P CG G     A   + + G  H     L  +  +++P 
Sbjct: 118 QLQDAAGLLQTQPFV--TLCEPCCGAGCITLAAAEVLRELG--HDPLCSLWVYAIDIDPL 173

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNI 276
              +    + +  + +      + + 
Sbjct: 174 AAVMAYIQLSLTGIPAAVTIGNALHD 199


>gi|218132263|ref|ZP_03461067.1| hypothetical protein BACPEC_00120 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992778|gb|EEC58779.1| hypothetical protein BACPEC_00120 [Bacteroides pectinophilus ATCC
           43243]
          Length = 418

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 25/181 (13%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAI--FEDF---DFSSTIARLEKAGLLYKICKNFSGI 143
           + L  ++ +++  +YI       +    F D     F S    +E+  L  K        
Sbjct: 243 NVLKESDIKSSRINYIKQVFSTLQENTKFADIPLGHFKSITWYIEQLELKIKPM------ 296

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +         +   Y   I ++      G    +TP+ +      L           + 
Sbjct: 297 -MDYADSTVDALGVFYHEFI-KYSGGDGSGLGIVLTPQHLTEFMCELA----------NV 344

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLI 261
                + D  CG+G FL  AM+H+    +  ++  I     +G E +   + + +A M+I
Sbjct: 345 NKNSRVVDICCGSGSFLVTAMSHMFKDANPDEVENIRKNGLYGVEFDDGLYTLAIANMII 404

Query: 262 R 262
           R
Sbjct: 405 R 405


>gi|284054608|ref|ZP_06384818.1| superfamily II DNA/RNA helicase [Arthrospira platensis str. Paraca]
          Length = 516

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 25/210 (11%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR 207
           +     ++ +YE   + F  +V++      TP+ +V      + +       K       
Sbjct: 284 SEKQHFLNTVYERFFQGFSLKVADTHGIVYTPQSIVDFMVKSVDEILRTEFNKSLSDKGV 343

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DP  GTG F+   M  +      HK    L  H  E+    + +    +    L + 
Sbjct: 344 HILDPFVGTGNFIMRIMREIRKTALSHKYQQEL--HCNEVMLLPYYIASMNIEHEYLTAT 401

Query: 268 PRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPPFGKKWEKDKD 310
            +      I    T S       DLFT +                + NPP+   W+++++
Sbjct: 402 GQYQPFDGICLVDTFSVQESLQLDLFTPENTQRVKQQQSSPIFVVIGNPPYNA-WQQNEN 460

Query: 311 AVEKEHKNGELG----RFGPGLPKISDGSM 336
              K  K  + G    R      K S  ++
Sbjct: 461 DNNKNRKYSQRGGVDKRVAETYAKDSKATL 490


>gi|158523151|ref|YP_001531021.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511977|gb|ABW68944.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 746

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 118/384 (30%), Gaps = 67/384 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L++ LE         V      FG  +   +SF +V          + L+ L      
Sbjct: 1   MVLIKYLEDR------NVFPSESWFGKFHKGAKSFFEVLKSGDPEKVYWLLNFLERKFNG 54

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +             K I  +F        +++   L+K              +P  ++S+
Sbjct: 55  DVFALENIGQQKLTKGILSNFADLVEARTIKRQRYLWKQ--------FSFKHLPVEIISH 106

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y+  ++        G     TP        +LLL  D AL          + DP CG+G
Sbjct: 107 LYQRFVQ-------GGHGAVYTPP----FLASLLL--DQALPYSKLTGTERILDPACGSG 153

Query: 218 GFLTDAMNHVADCGSHHKIPP-----------ILVPHGQELEPETHAVCVAGMLIRRLES 266
            FL  A   + +                        +G EL+P    + V  + +   ++
Sbjct: 154 IFLVGAFKRLVNVWRSRNSWRRPSVTSLKKILKQSIYGIELDPNAIDLSVFSLCLAICDA 213

Query: 267 DPRRDLSKNIQQGSTLSKDLFT------------------GKRFHYCLSNPPFGKKWEKD 308
              + + ++++       +LF                      F   + NPPF  K    
Sbjct: 214 LQPKVIWQDLKFDPLYKSNLFKADFFQVLLNSHQKVPTLFDNDFDVIIGNPPFESKLSDS 273

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              V    +  +  R   G       + LF     N L+     GGR  ++  +  L+N 
Sbjct: 274 GKEVNYIAQQNDNSR---GSLPDKQVAYLFFEQAFNVLK----PGGRVCLIQPAQFLYNN 326

Query: 369 RAGSGESEIRRWLLENDLIEAIVA 392
                 + I++       I+ I+ 
Sbjct: 327 NTFVFRAAIQK----KYKIDTILD 346


>gi|258616829|ref|ZP_05714599.1| Type I restriction-modification system methylation subunit
          [Enterococcus faecium DO]
          Length = 79

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 21/57 (36%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
          A L   ++  A++L      +++   +L     + L   L      + ++ L    +
Sbjct: 3  AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDT 59


>gi|300858888|ref|YP_003783871.1| hypothetical protein cpfrc_01471 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686342|gb|ADK29264.1| hypothetical protein cpfrc_01471 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206588|gb|ADL10930.1| Hypothetical protein CpC231_1463 [Corynebacterium
          pseudotuberculosis C231]
 gi|308276831|gb|ADO26730.1| Hypothetical protein CpI19_1470 [Corynebacterium
          pseudotuberculosis I19]
          Length = 62

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          + A L + +W+ A  L G     D+   + P    + +    E   +       
Sbjct: 4  AQAKLESKLWEAANSLRGAMDAADYKNYVFPVFFWKWISDNWELGHTKFLADVE 57


>gi|60680772|ref|YP_210916.1| hypothetical protein BF1252 [Bacteroides fragilis NCTC 9343]
 gi|60492206|emb|CAH06971.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 1016

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/440 (14%), Positives = 122/440 (27%), Gaps = 65/440 (14%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K A  L G                +R L             KY       I L    K  
Sbjct: 167 KIANALIGKV------------IFVRYLIDRKVKLCFEGISKYWTNEEFCILLNDPKKTK 214

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
            +  Y             N+       +    D      +   +S+    L+   L    
Sbjct: 215 DFFDYL-----------ENSETGFNGDLFPLRDEEYIQIQPIHYSTIRRLLKGEDLDEMQ 263

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              F   +     +P   +SN+YE  I +   +  E    + TP  +V     +L +  +
Sbjct: 264 PSLFEFYDFSI--IPIEFISNVYELFIGK---DNQEKEGAYYTPLFLVDY---ILKETIE 315

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------------SHHKIPPILVPH 243
                  G    + DP CG+G FL + +  + +               +  K        
Sbjct: 316 NKLNTQDGYECKVLDPACGSGIFLVETLRKIIEKYIASGVDVKSTEFKNEIKEITKRNIF 375

Query: 244 GQELEPETHAVCVAGMLIRRLES--------------DPRRDLSKNIQQGSTLSKDLFTG 289
           G + +     V +  + +  L+                       +     T    LF  
Sbjct: 376 GIDKDLNAVQVAIFSIYLTLLDYLDPPAIAEFKFPCLINENFFESDFFNEETEFNILFKD 435

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F + + NPP+      D  +   +++               + + +    +    +  
Sbjct: 436 IKFDFIVGNPPWKGGGIGDLGSKYLKNRKKREKELSKKFDIAINNNEIAEGFVFRVSDFC 495

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTN---- 402
            +    A I+ SSS    G      S  R++ LE   I+ +  L     ++F ++N    
Sbjct: 496 SDKTQVALIIRSSSLYNLGYNKKHNSPFRQYWLEEFFIDRVFELAPVRHEVFEKSNDPAI 555

Query: 403 IATYLWILSNRKTEERRGKV 422
               +      K       +
Sbjct: 556 APAAILFYRYAKGVNTNNNI 575


>gi|303241443|ref|ZP_07327946.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302591052|gb|EFL60797.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 2215

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/390 (12%), Positives = 105/390 (26%), Gaps = 67/390 (17%)

Query: 43  RLECALEP--TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
            L+  LE       ++    +        E       Y+  + ++ +       N   N 
Sbjct: 550 FLDKPLEEQGNYDNLKNDNNSLEAEENQEEILSTDEKYNEDSPNKINFQYSERYNLYPNG 609

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC------KNFSGIELHPDTVPDRV 154
                  +  A  + +  +  + +A  ++  +L +          FS      +     +
Sbjct: 610 AKTKYKNNIEAIKMLKRIESENRLADHDEQIVLARYVGWGGLANAFSDTVTGWENEYQEL 669

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              + E   + +    +     + T  D++      +     A  K      R + DP  
Sbjct: 670 KHLLDE---KEYEDARNSTITAYYTEPDLIKHMYNAIRQFGFAGGKN-----RKILDPAM 721

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTG F +   + + D             +G E++  T  +               +   K
Sbjct: 722 GTGNFFSVLPDGLKDTA----------IYGVEIDSITGRIAK-------------QLYQK 758

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                       +    F   L N PF      DK                    + ++ 
Sbjct: 759 GEISVQGYETTNYEDNSFDIILGNIPFNNIKLYDK--------------------RYAEE 798

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             L   +   K       GG    + S   +        ++++R ++ E   +   + LP
Sbjct: 799 DFLIHDYFIAKSLDLLKPGGIIGFITSKGTM-----DKKDTKVREYIAERADLIGAIRLP 853

Query: 395 TDLF---FRTNIATYLWILSNRKTEERRGK 421
            + F     T +   +       +     K
Sbjct: 854 NNAFKALAGTEVTADILFFQKYSSPRNLDK 883


>gi|323669706|emb|CBJ94829.1| putative membrane protein [Salmonella bongori]
          Length = 647

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            E +   + S        S   +   +     +        +R +   +   + +   G+
Sbjct: 437 PEVNRWQVFSDFVHMAACSLYNAIHRDEAFEADYMQRVGRYSREDANNMSRLLAEVIEGL 496

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E      P   +  I+ +L        +     + TP +V +  + ++L    ++     
Sbjct: 497 EF----CPTDFLGQIFMNL-----ELGNTRHGQYFTPYNVCYTMSRMILSDRLSVLTSGE 547

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T+ DP CG GG +      + + G +      ++ +  +++P    +C   + +  
Sbjct: 548 RDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYCVDIDPVAAMMCYIQLSLMG 605

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           + +      S  +                   ++ P F      ++   E+ H+
Sbjct: 606 IPAIVATGNSLTVA--------------IKREMATPMFVLGHWHNRWQAERTHQ 645


>gi|29347999|ref|NP_811502.1| type I restriction enzyme, M subunit [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339901|gb|AAO77696.1| type I restriction enzyme, M subunit [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 256

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 24/189 (12%)

Query: 89  STLGSTNTRNNLESYI-ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           + L   N  N+  +YI   FS  A    +++ +   +  ++   +L    +  +   +  
Sbjct: 24  NGLDPVNVFNDFLTYIIHGFSPGAPP-LQNWKYKR-LQNMKFMEMLTGWVQLMAS-RIKD 80

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           DT       ++Y  L+ +   +       F TP  +  L              E     +
Sbjct: 81  DTSWYDPFGDLYMALVSKSAQQS---QGQFFTPVHICDLMV-------LCTQTEEKMTGQ 130

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DPTCG+G  L            +H   P     G+++      + V  MLI     +
Sbjct: 131 RMGDPTCGSGRLLLA----------YHARNPENYLIGEDINRTCCLMTVCNMLIHGCVGE 180

Query: 268 PRRDLSKNI 276
                S N 
Sbjct: 181 VICHDSLNP 189


>gi|88810721|ref|ZP_01125978.1| type I restriction enzyme, modification chain [Nitrococcus
          mobilis Nb-231]
 gi|88792351|gb|EAR23461.1| type I restriction enzyme, modification chain [Nitrococcus
          mobilis Nb-231]
          Length = 151

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 19/47 (40%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
            + L + +W++ ++L G    + +   +L    ++ +    +    
Sbjct: 4  KKSQLYSSLWQSCDELRGGMATSQYKDYVLTLLFMKYISDKRDSLIE 50



 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               + D ++ + YE+L+R F +E  +    F TP +   
Sbjct: 65  GDKEIGDDLLGDAYEYLMRHFATESDKSKGQFYTPAEASR 104


>gi|160882500|ref|ZP_02063503.1| hypothetical protein BACOVA_00451 [Bacteroides ovatus ATCC 8483]
 gi|156112081|gb|EDO13826.1| hypothetical protein BACOVA_00451 [Bacteroides ovatus ATCC 8483]
          Length = 272

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 68/243 (27%), Gaps = 44/243 (18%)

Query: 89  STLGSTNTRNNLESYI-ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI---E 144
           + L   N  N+  +YI   FS  A          S   + ++     ++   +  +    
Sbjct: 24  NGLDPVNVFNDFLTYIIHGFSPGAPP------LQSWKYKRQQNMKFMQMLTGWVRLMASR 77

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +  DT       ++Y  L+ +   +       F TP  +  L              E   
Sbjct: 78  IKDDTSWYDPFGDLYMALVSKSAQQS---QGQFFTPVHICDLMV-------LCTQTEEKK 127

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             + + DPTCG+G  L            +H   P     G+++      + V  MLI   
Sbjct: 128 TGQRMGDPTCGSGRLLLA----------YHARNPGNYLIGEDINRTCCLMTVCNMLIHGC 177

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +     S N             G        NP     W           K    GR 
Sbjct: 178 VGEVICHDSLN------------PGNFVDGWKVNPMLA--WTGIPTVKRMNMKEYRAGRN 223

Query: 325 GPG 327
            P 
Sbjct: 224 LPA 226


>gi|288559582|ref|YP_003423068.1| type II restriction enzyme, methylase subunit [Methanobrevibacter
           ruminantium M1]
 gi|288542292|gb|ADC46176.1| type II restriction enzyme, methylase subunit [Methanobrevibacter
           ruminantium M1]
          Length = 1054

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 81/510 (15%), Positives = 160/510 (31%), Gaps = 105/510 (20%)

Query: 110 NAKAIFED-FDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRF 166
           N K  FED ++  + +  + K  L          S  +   +   + ++ +I+E+ I   
Sbjct: 333 NLKEDFEDKYEDIAKLIGVYKDTLNPIFINLLIISTYDFDSELDVN-ILGHIFENSISDI 391

Query: 167 GSEVS------EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY---------- 210
               +      +    + TP  +        + P  ++  ++  +   LY          
Sbjct: 392 EELKNDNQEQRKKDGVYYTPEYITDYICRNTIIPYLSISGKASTVHELLYEYESSNSLDV 451

Query: 211 -----------DPTCGTGGFLTDAMNHVADCGS---------------------HHKIPP 238
                      DP CG+G  L  +++ + +                          K   
Sbjct: 452 LDSKLTNIKVLDPACGSGSMLNKSVDILFEIHEALHASKYAGDSSLDRFFDSLEKRKEII 511

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRL------ESDPRRDLSKNIQQGSTLSKD------- 285
               +G +L  E+  +    + ++        E      L K+I+ G +L  D       
Sbjct: 512 SNNIYGVDLNEESVEITKLSLFLKLATTVGLKEGFQLPSLDKHIKCGDSLVDDESIAGNK 571

Query: 286 ----------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                     +F    F   + NPP+    E D+   +    N E       L       
Sbjct: 572 AFNWYESFSEVFESGGFDIIVGNPPYVDIKEMDEKTAKYIFDNYETSFNRINLYST---- 627

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
                    K        G  + ++ +S LFN    S  S+IR  +L N  I  IV    
Sbjct: 628 ------FVEKSYYLLKNEGIFSFIMPNSILFN----STYSKIRELILNNTSILNIVRTSD 677

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD---QRRQI 452
           D+F    +   + I      E  + K+ +    D    I            +   +   I
Sbjct: 678 DVFKDAKVEPIILIFKKGYDEGNKTKILI--KKDDMDEIPINNYSEHFFTQERWFENNSI 735

Query: 453 LDIYVS--------RENGKFSRMLDYRTFGYRRIKVLRPLRMS--FILDKTGLARLEADI 502
           ++I+          + +G   R++DY  F        +   MS   I ++   ++++ D 
Sbjct: 736 INIFSDDFTFDLLKKIDGNNERLIDYCDFSLGLTPYDKYKGMSEDIIKNRKFHSKIKLDD 795

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           T+++L         ++ K   ++   YG  
Sbjct: 796 TFKELLDGSDITRYNV-KWGEKEYIKYGDW 824


>gi|67920716|ref|ZP_00514235.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67856833|gb|EAM52073.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 119

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
             ++ I+  LL    +  IV LP  +F   T+I T L   +  ++ +       I   + 
Sbjct: 8   GVKTRIKEKLLSECNLHTIVRLPNGVFNPYTSIKTNLLFFTKGESTKN------IWFHEH 61

Query: 431 -WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
            +        K + I  ++       + +RE  +F+  +           +
Sbjct: 62  PYPPGYKSYSKTKPIKIEEFAAEKAWWNNREENEFAWCVSIEEIKANGYNL 112


>gi|227889675|ref|ZP_04007480.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus johnsonii ATCC 33200]
 gi|227849818|gb|EEJ59904.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus johnsonii ATCC 33200]
          Length = 333

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 101/333 (30%), Gaps = 42/333 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
            T   +  ++   SFS      F+  +  +   ++E      +     +    +L  D +
Sbjct: 12  QTAIEHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDYDNL 69

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +   I+  L  +  ++ +       TP  V  +   +         K  P   + + 
Sbjct: 70  PRALKVQIFTLLALKAITQDARDYNLMPTPSVVATIIALI-------WQKIVPTGKKIVV 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  GTG  L   +  +           ++    +E              +  L      
Sbjct: 123 DPAIGTGNLLYSVVRQLIQENHSQNNYNLIGIDNEES-------------LLDLADIGAH 169

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I      + D +  ++    LS+ P G     +     + H              
Sbjct: 170 LEDLKIDLYCQDALDPWMIEKADVVLSDLPVGYYPLDNNAQRYENH----------AKEG 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S    LF+  + N L+      G A +V+          G G +E   WL +   I++I
Sbjct: 220 HSFAHTLFIEQIVNNLKR----DGFAFLVVPRLLF----TGKGSTEFMTWLAKKVNIQSI 271

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V LP ++F        + +  N        +V 
Sbjct: 272 VDLPDNMFSSQIQQKSILVFQNHGDHAVEREVL 304


>gi|153870743|ref|ZP_02000078.1| helicase domain protein [Beggiatoa sp. PS]
 gi|152072790|gb|EDN69921.1| helicase domain protein [Beggiatoa sp. PS]
          Length = 815

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 97/306 (31%), Gaps = 42/306 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR 207
           +     ++ IYE   + F  +V++      TP+ +V      + +       K       
Sbjct: 70  SYKQHFLNTIYERFFQGFSIKVADTHGIVYTPQPIVDFMVRSVEEILQREFGKSLVDKGV 129

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLES 266
            + DP  GTG F+T  +  +   G            H  E+    + +    +  + LE 
Sbjct: 130 HILDPFVGTGNFITRIIQEIRTHGKMKLDYKYRHELHCNEIMLLPYYLACMNIEHQYLEL 189

Query: 267 DPRRDLSKNIQQGSTL------SKDLFTGK-----------RFHYCLSNPPFGKKWEKDK 309
             R    + I    T        K+LF  +            F   + NPP+   W+ ++
Sbjct: 190 MGRYRPYEGICLADTFELAENKQKELFVPENTERVKQQQKSEFFVIIGNPPYNA-WQANE 248

Query: 310 DAVEKEHKNGELGRFGPGLP----KISDGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363
           +   K      +  +         K ++ + L    +       +     G  A V ++ 
Sbjct: 249 NDNNKNRLYKTVDNWVRDTYAKDSKATNKNALSDPYVKAIKWASMRIKNEGMVAFVTNNG 308

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL------------FFRTNIATYLWILS 411
            L           +R+ L ++     I+ L  ++             F   +   + +L 
Sbjct: 309 FL----DNIAFEGMRKHLAQDFSKIYILDLGGNVRKNPKLSGTTHNVFGIQVGVSINLLV 364

Query: 412 NRKTEE 417
            +K+ E
Sbjct: 365 KKKSTE 370


>gi|33152056|ref|NP_873409.1| type I restriction enzyme M subunit [Haemophilus ducreyi 35000HP]
 gi|33148278|gb|AAP95798.1| possible type I restriction enzyme M subunit [Haemophilus ducreyi
           35000HP]
          Length = 252

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 30/204 (14%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           S     EK  L        + +E          +  ++  L              + TP 
Sbjct: 58  SHYTAKEKQQLSQLFVIIINALE----QKTYDFLGTVFMAL-----DLSDGYKGQYFTPP 108

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +     A+ L    ++ ++       L +PTCG+G  +  + NH+     H      L 
Sbjct: 109 HIAQAMAAMTLMDCHSIIEKRGF--MKLQEPTCGSGVMIIGSYNHLRQ--EHFNPQQQLW 164

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-------------- 287
              Q+L+  T  +C   M +  +  +     +   +    L                   
Sbjct: 165 VRAQDLDFTTAMMCYIQMTLLHIPGEVIIGNTLTDEVCYHLYTPAHILGNGTMRLNNMTE 224

Query: 288 ---TGKRFHYCLSNPPFGKKWEKD 308
                +     ++NPPF   WE +
Sbjct: 225 SEVEAQHNTDTVNNPPFEIDWETE 248


>gi|164688713|ref|ZP_02212741.1| hypothetical protein CLOBAR_02360 [Clostridium bartlettii DSM
           16795]
 gi|164602189|gb|EDQ95654.1| hypothetical protein CLOBAR_02360 [Clostridium bartlettii DSM
           16795]
          Length = 658

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 113/339 (33%), Gaps = 66/339 (19%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+   +   +  +    + TP  VV       +   D +    P     + D +CG G 
Sbjct: 11  YEN---KLDIKTRKERGIYYTPYVVVKYILDNTIGKHDIVQNPYP----KILDMSCGCGN 63

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQE-----------LEPETHAVCVAGMLIRRLESD 267
           FL  A   +     +  I  +   +GQ+           ++     V      +  LE++
Sbjct: 64  FLIQAYTMLYKK-FYDNIDKLNQRYGQDFICKEDIGLHIIKNCIFGVDTDNDALMILENE 122

Query: 268 PRRDLSKNIQQ-----------------------------GSTLSKDL---FTGKRFHYC 295
            ++ L K +++                             G +L  DL   F   +F Y 
Sbjct: 123 LKKILKKELRETYKHKPLIRDDDLDEILDEEYLDKLNIFCGDSLKNDLSEVFGVDKFDYI 182

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPP+       +  ++  +K      F        D    F   + + L       G+
Sbjct: 183 IGNPPY-----VGQKYLDNNYKKFLYKEFEEVYKNKGDLYFCFYKKILDLLRQ----DGK 233

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRK 414
           + I+     + +         +R +L+ N  IE I+  L  +LF    +A+ + I  ++ 
Sbjct: 234 SGIITPRYFMQSPSG----KYLRSYLVNNSQIEKIIDFLGANLFTGLGVASCIVIFGHKI 289

Query: 415 TEERRGKVQ-LINATDLWTSIRNEGKKRRIINDDQRRQI 452
             + +     L    +   +I+        IN +  ++I
Sbjct: 290 ETDNKNNCLELYKIKNENINIKKIANLEDYINKENFKKI 328


>gi|153870433|ref|ZP_01999836.1| adenine specific DNA methyltransferase [Beggiatoa sp. PS]
 gi|152073099|gb|EDN70162.1| adenine specific DNA methyltransferase [Beggiatoa sp. PS]
          Length = 1026

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/382 (13%), Positives = 113/382 (29%), Gaps = 38/382 (9%)

Query: 43  RLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           R++    +   +   ++       N+   +  ++          +          + N+ 
Sbjct: 180 RVDDKKFQKAFNGFADQCRQAINPNLANAALEEMLIQHLLTERIFRRIFNHPDFAKRNV- 238

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             IA   +N         F+      ++    YK  ++ +   +   +     ++ +YE 
Sbjct: 239 --IAREIENVIDKLTAKSFNRDAF-FDELKYFYKALEDVAAT-IDEYSYKQYFLNTVYER 294

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFL 220
             + F  +V++      TP+ +V      + +  D    K        + DP  GTG F+
Sbjct: 295 FFQGFSVQVADTHGIVYTPQSIVDFMVKSVNEILDQEFGKSLASKGVHILDPFVGTGNFI 354

Query: 221 TDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAG-----------------ML 260
              M  +A        HK    L  H  E+    + +                     + 
Sbjct: 355 VRIMREIATQSRMALRHKYKNEL--HCNEVMLLPYYIASMNIEHEFLDLMGNYQPYEGIC 412

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +           S+     +T          F   + NPP+      + D  +  +    
Sbjct: 413 LADTFELAEGIQSEMFAPENTKRVKKQQKTDFFVIIGNPPYNAGQINENDNNKNRNYPVI 472

Query: 321 LGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            GR      K S  ++L  +                  G  A V ++S L +        
Sbjct: 473 DGRVRETYSKDSKATLLRKLFDPYVKAIRWASDRIGDEGIVAFVSNNSFLDDLSFDG--- 529

Query: 376 EIRRWLLENDLIEAIVALPTDL 397
            +R+ L ++     I+ L  ++
Sbjct: 530 -MRKHLEQDFSKIYILDLKGNV 550


>gi|284053541|ref|ZP_06383751.1| type I restriction-modification system, M subunit, putative
           [Arthrospira platensis str. Paraca]
 gi|291569814|dbj|BAI92086.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1053

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 87/295 (29%), Gaps = 57/295 (19%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D +P   +S+IYE  + +   + +       TP  +V      +L  D   +      
Sbjct: 330 SFDAIPLEFISSIYEEFVDK--GKKNADKGVHYTPGHLVDFILDGVLPWDSDEWD----- 382

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAV 254
              + DP CG+G FL  A   +            +              G ++ P+   V
Sbjct: 383 -LKILDPACGSGIFLVKAFQRLIYRWKKAYPVEEITAPILQQILAGNLFGVDVNPQAVRV 441

Query: 255 CVAGMLIRRLES----------------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + +   +                 D R   +   Q+     + +    ++   + N
Sbjct: 442 ASFSLYLTMCDEIDPRYYWEQVRFPRLRDKRLISADFFQENVEGFRTVHDAGQYDLVIGN 501

Query: 299 PPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            P+G+       +  A + E      G  GP     S               L   G   
Sbjct: 502 APWGRNTVTRFANSWARDNEWPI-TYGNIGPLFLPKSAA-------------LAKAGQPI 547

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYL 407
           A +  +   +FN  + + E   R  L     ++ IV L      LF      T +
Sbjct: 548 AMMQPAGGLIFNQISTAQE--FRHKLFCEYKVDEIVNLSALRFGLFKDAISPTCI 600


>gi|300361343|ref|ZP_07057520.1| DNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353962|gb|EFJ69833.1| DNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 333

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 103/333 (30%), Gaps = 42/333 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
            T   +  ++   SFS      F+  +  +   ++E      +     +    +L  D +
Sbjct: 12  QTAIEHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRKLDYDNL 69

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +   I+  L  +  ++ +       TP  +  +   +         +  P   +T+ 
Sbjct: 70  PRTLKVQIFTLLTLKAITQDASDYNLMPTPSVIATVIALI-------WQRIVPTGKKTVV 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  GTG  L   +  +           ++    +E              +  L      
Sbjct: 123 DPAIGTGNLLYSVIRQLIQENHSQNNYKLIGIDNEE-------------ALLDLADIGAH 169

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I      + D +  ++    +S+ P G     +     + H              
Sbjct: 170 LEDLKIDLYCQDALDPWMIEKADIVVSDVPVGYYPLDNNAERFENH----------AKEG 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S    LF+  + N L+      G A +V+          G G +E   WL +   I+AI
Sbjct: 220 HSFAHTLFIEQIVNNLKR----DGFAFLVVPRLLF----TGKGSTEFMTWLAKKVNIQAI 271

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V LP D+F        + +  N      + +V 
Sbjct: 272 VDLPDDMFSSQIQQKSILVFQNHGEHALKREVL 304


>gi|298345337|ref|YP_003718024.1| putative type I site-specific deoxyribonuclease [Mobiluncus
           curtisii ATCC 43063]
 gi|315655756|ref|ZP_07908654.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|298235398|gb|ADI66530.1| possible type I site-specific deoxyribonuclease [Mobiluncus
           curtisii ATCC 43063]
 gi|315489820|gb|EFU79447.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 179

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A ++ +  LF   + + E  +RR L+EN  +E I+ +P+ +F   + ++T + + +    
Sbjct: 4   ACIVPNGVLFRSNSKAYEQ-LRRELVENQKLETIIYMPSGVFKPYSGVSTAILVFTKTDA 62

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS--------RENGKF--- 464
                 V L N          + K+      D    IL  + +        R    F   
Sbjct: 63  GG-TDDVWLYNM--EGDGYTLDDKRDPDEKHDDIPDILSRWHNLGAERDRARTEKSFLVS 119

Query: 465 -SRMLDY-RTFGYRRIKVLRPLRMSFILDKTGLARL 498
            S +++    F + +       R+ +   +  L  L
Sbjct: 120 KSEIVENGYDFSFNKYTETVYERVEYPPTEEILDDL 155


>gi|254489560|ref|ZP_05102762.1| restriction methylase [Roseobacter sp. GAI101]
 gi|214041730|gb|EEB82371.1| restriction methylase [Roseobacter sp. GAI101]
          Length = 575

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 32/237 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y  L+ +    ++     F +P  +  +  AL  D                 +P
Sbjct: 108 YEVGMLYTSLLPKSAKSLN---GIFYSPPAISGMLLALANDAKAD------WTRHLFLEP 158

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-----PHGQELEPETHAVCVAGMLIRRLESD 267
           +CG G  LT     + D         IL        G E++P    +    +    L   
Sbjct: 159 SCGGGVILTAIAERMIDAIKRQPSSEILAHLSKNLVGYEIDPFGAWLAQVSIDFLALPFC 218

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D    +    T +  +   ++F + + NPPFG+         +++ ++ E   FG  
Sbjct: 219 TDEDSRFPVIVRCTDTLAVNDNEQFDFVIGNPPFGR-----TKLTDEQRRHFERSTFGHA 273

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                +   LF       + L    GG    V  +S L    +G   S++R  L E+
Sbjct: 274 -----NLYALFWDQALRLVRL----GGTIVFVTPTSFL----SGRYSSKLRNLLSEH 317


>gi|294783677|ref|ZP_06749001.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480555|gb|EFG28332.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 746

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 72/174 (41%), Gaps = 12/174 (6%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L  +     +E      G+A  ++ S  L++        +IR + ++ + IEAI+ LP  
Sbjct: 375 LEWLFYIKMIEEQLKDEGKALSLVESEILYDYNNNE---KIREYFIKKEYIEAIILLPER 431

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + F  N +  L + S         K++ ++A++   + + + KK  I+ D    +I+++ 
Sbjct: 432 IMFDINASLALIVFSKGNK-----KIRFVDASNFGKAKKIKEKKITILRDSDVDEIINLL 486

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            +  N K +   + + F          L +   +D + +   +  I    L  L
Sbjct: 487 NNDTNSKVAISKEIKDFSENYYN----LGVDINIDPSSIDPSKKTIRGIPLKKL 536


>gi|87303435|ref|ZP_01086223.1| type I restriction-modification system specificity subunit
          [Synechococcus sp. WH 5701]
 gi|87282083|gb|EAQ74045.1| type I restriction-modification system specificity subunit
          [Synechococcus sp. WH 5701]
          Length = 92

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
              +W  A+ L  +    ++  V+L    L+ +  + E  R+ ++
Sbjct: 46 FEAKLWLTADKLRNNMDAAEYKHVVLGLIFLKYIAGSFEEHRAKLQ 91


>gi|172036013|ref|YP_001802514.1| putative N-6 DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171697467|gb|ACB50448.1| putative N-6 DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 604

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/438 (13%), Positives = 125/438 (28%), Gaps = 66/438 (15%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            + +   + +   F   S       +   Y      +   ++      + +  IYE+  +
Sbjct: 156 NNIARELQGVINTFFTGSVRRNTLSSIERYYGVIRRTAASIYNHHEKQKFLKAIYENFYK 215

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDA 223
            +  + ++      TP ++V      +       F K        + DP  GTG F+T+ 
Sbjct: 216 AYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFGKLLCDSGVEILDPATGTGTFVTEL 275

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           + ++      +K    +  H  E++   + +    +     +     +   NI    TL 
Sbjct: 276 IEYLPKDKLKYKYQNEI--HCNEVQILPYYIANLNIEYTYQQKMNEYEEFNNICFVDTLD 333

Query: 284 KDLFTGKRFH---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              FTGK+                         + NPP+  K E            G   
Sbjct: 334 HTSFTGKQLDLFALTIENTERIKNQNDRQISVIIGNPPYNAKQENFNQNNANRFYEGIDK 393

Query: 323 RFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           R      K        +++              +  G  A V ++S +           I
Sbjct: 394 RIKETYIKQGTAQNQIVIYDMYTRFIRWASDRLSKNGIIAFVSNNSFIDALAYDGFRKII 453

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            +   E                       +WI++ +      G+             R  
Sbjct: 454 SQEFNE-----------------------IWIINTKGNARTSGE-------------RRR 477

Query: 438 GKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            +   I +D  R  I   ++ R EN +  ++       Y++ +  +       ++     
Sbjct: 478 KEAGNIFSDQIRVGIAVYFLVRNENAEGFKVFYNAIEDYKKAEDKKEYLRIHKINTLNFP 537

Query: 497 RLEADITWRKLSPLHQSF 514
            ++ D     L+    +F
Sbjct: 538 HIKPDKRHNWLNQSDNNF 555


>gi|325478319|gb|EGC81435.1| N-6 DNA Methylase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 284

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 33/244 (13%)

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLF 287
           D     +        G E E     +    MLI         D + N+ Q S   + +  
Sbjct: 9   DTEEEREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWI 61

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-MHLANKL 346
             K  +  L NPP+            ++  N E  +      K S         H    +
Sbjct: 62  KDKNVNIVLMNPPYNAT---------RKFCNPEYVK----SWKSSKKEDPSKGFHFVEYI 108

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIA 404
                   + A++L         +     + ++ +L+N  ++A+ +L  ++F+   + IA
Sbjct: 109 ARHIPANSKIAVLLPMQAAIGNSSEV--KKYKKKMLDNYTLDAVFSLTNEMFYPGASAIA 166

Query: 405 TYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQ------RRQILDIYV 457
             +    ++K E    +       D  +   +  G+  +  +D        + + LD+Y 
Sbjct: 167 CCMIFDLSQKHERSDRETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWVSTKDEWLDLYK 226

Query: 458 SREN 461
           +++ 
Sbjct: 227 NKKE 230


>gi|262373837|ref|ZP_06067115.1| predicted protein [Acinetobacter junii SH205]
 gi|262311590|gb|EEY92676.1| predicted protein [Acinetobacter junii SH205]
          Length = 996

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 139/469 (29%), Gaps = 85/469 (18%)

Query: 8   AASLANFIWK----NAEDLWGDFKHTDFGKV-ILPF----TLLRRLECALEPTRSAVREK 58
            + L N++++     A +L  +          IL         R L       +  V   
Sbjct: 130 QSWLENYLFRLLQTTARNLRENISANKLTDNQILSLVGRALFTRFLIDR----KIIVDSD 185

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                     L +       S  + S+       + N            S++    F   
Sbjct: 186 VGNISNKTSKLNNLFN----SVSSISDTFAWLDKTFNGNLLPLGDFYYNSEDYNEFFSQI 241

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
              S     E   +L         ++        VP  ++S +YEH    + +E +    
Sbjct: 242 GDESEHICFELQDILLATINRQMSLDWGRIQFQHVPADMLSQVYEHFAHAYQNEFARKTS 301

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-------- 227
              TP  +  +      D  +   K S      + DP+ G G FL  A   +        
Sbjct: 302 IHYTPSHIAKILVDSAFDGLEIEDKSS----AQILDPSAGAGVFLVLAFKRLVLEKWKIT 357

Query: 228 ADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPR---------------- 269
            +  + ++I  IL     G ++  E+       + +  LE DP+                
Sbjct: 358 GERPTRNQIRGILNHQLVGLDINSESLKFAALSLYLTALELDPKPTPLSELKFDGLNTKT 417

Query: 270 -RDLSKNIQQGSTLSK-----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             ++S       TL        +   +RF   + NPP+ K+  + +   EK ++  E   
Sbjct: 418 LINVSFGEDLQETLGSLSERLPVELNERFDIVVGNPPWTKQ--RGRGVGEKFNELIERIA 475

Query: 324 FGPGLPKISDGSML-----FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
              G+               +  +   +E     G  A  + +   LFN           
Sbjct: 476 ISRGIDSKVASQFNVGCDPDIPFIWRAIEWCKPNGMIAYALHAQHTLFNYGNS------- 528

Query: 379 RWLLENDLIEAIVALPTDLFFRTNI------------ATYLWILSNRKT 415
            ++L + L++  + L T +F  + +                 I  N+K 
Sbjct: 529 -FILRSALLDC-IEL-TGIFNGSALRQEKAIWENNDAPFCFLIAKNKKP 574


>gi|225028436|ref|ZP_03717628.1| hypothetical protein EUBHAL_02710 [Eubacterium hallii DSM 3353]
 gi|224954234|gb|EEG35443.1| hypothetical protein EUBHAL_02710 [Eubacterium hallii DSM 3353]
          Length = 457

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 62/167 (37%), Gaps = 23/167 (13%)

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           + G   FL+   + L+      G  A V   + L+       E++IR++L+E  + ++ I
Sbjct: 281 TKGEFPFLLTAISCLK----ENGFLAAVFPGAMLYR---EGREAQIRKYLVEELNCLDTI 333

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP  +F     A  +      +  +    +   + +++             ++ +Q  
Sbjct: 334 MLLPDSIFHSIGQAEAILFFQMNRERK---DILFFDCSEI-----------ESLDKEQID 379

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            I  ++  R+        ++          +  P  ++ ++ +T + 
Sbjct: 380 TIDQLWSERKTIPGLCACVERDEIEKNEYNLNLPRYITKVVKETAID 426


>gi|300779500|ref|ZP_07089358.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300505010|gb|EFK36150.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1776

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/484 (14%), Positives = 139/484 (28%), Gaps = 85/484 (17%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL      +    N Y   I +         + F TP ++     A + D   ++     
Sbjct: 75  ELFSHIKDNSESENSYREYISK---IRGSILDAFYTPTEITQSIAAAITDTGISIS---- 127

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               ++ +P+ G G F+                         E +  T  +      +  
Sbjct: 128 ----SILEPSAGVGAFI-----------EPFTGIDGRRICAYEQDLLTGKILKN---LYG 169

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             +D R D  +N+ +  T          +   + N PFG          +  +  G+   
Sbjct: 170 SNADIRIDSFENMHEEDT---------GYDLIIGNIPFGT-----TSIFDLSYSRGKDQA 215

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                  + +   L       K       GG  A + S   L +         IR  L+ 
Sbjct: 216 RKFAAQSVHNYFFL-------KATDKLREGGLLAFITSQGVLNSQSNFP----IREALMN 264

Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE-------------RRGKVQL---- 424
                + + LP +LF    T++ T L +L                        +      
Sbjct: 265 EHRFVSALRLPNNLFEESGTSVGTDLIVLQKSSGPRSLSGRALDFMGTSENCNLLFNNPN 324

Query: 425 -INATDLWTSIRNEGKKRRI-INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            I AT  +      GK   I ++D    +I +    + +  F R  D + F   ++    
Sbjct: 325 HIIATRSFQDTDKYGKPITIHLHDGGTERIAEDLYRKLSEDFQRYFDLKMFNEHKVT--- 381

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
                  +D   L++   +I  + +           L     Q+      +   +   K+
Sbjct: 382 ------AIDTKVLSKPADNIPEKNIIHNSGDKRAIQLDLFSDQVLGEMSVKKTKRRGRKT 435

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDP-----RADPVTDVNGEWIPDTNLTEYENVPYLE 597
           +++   K K    F    I    +KD        +       +   +++    E++    
Sbjct: 436 SQSNVTKFKQLSFFDSGEIGTVDQKDKLDTELNHNEKKANIQKHSSNSSKKRVESLSLFH 495

Query: 598 SIQD 601
            I D
Sbjct: 496 EIDD 499


>gi|262372344|ref|ZP_06065623.1| predicted protein [Acinetobacter junii SH205]
 gi|262312369|gb|EEY93454.1| predicted protein [Acinetobacter junii SH205]
          Length = 142

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAV 254
            P     + DP CGT GFL  A  ++              +   +    G EL P T  +
Sbjct: 5   QPKPSEVIQDPACGTAGFLIAADAYIRQHHDLYALTEQETQFYTLDAFVGVELVPNTRRL 64

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
                L+  +  +        I+ G++L        +    L+   +
Sbjct: 65  AQMNCLLHDIGGEQGA-----IKLGNSLGPVGQALAKADVQLATLNW 106


>gi|325959874|ref|YP_004291340.1| type ii site-specific deoxyribonuclease [Methanobacterium sp.
           AL-21]
 gi|325331306|gb|ADZ10368.1| Type II site-specific deoxyribonuclease [Methanobacterium sp.
           AL-21]
          Length = 1021

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/472 (14%), Positives = 130/472 (27%), Gaps = 118/472 (25%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           ++I     LR  E         +R   L       +L    K A    YN+  +      
Sbjct: 231 QIIDRIIFLRMGEDRGAEKYGQLR-NLLDKPEIYQELCELWKEADQK-YNSGLFHFKDEK 288

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             N+  ++ +             +D  F   I  L      Y+              +  
Sbjct: 289 GQNSLPDILT--------PHLKIKDGVFKQIIKNLYYPDSPYEF-----------SVLSP 329

Query: 153 RVMSNIYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++ N+YE  + +                EV +    + TP+ +V       +       
Sbjct: 330 EILGNVYEQFLGKVIRLTQGHRAKIEEKPEVKKAGGVYYTPQYIVEYIVKNTVGKLCEGK 389

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV------------------ 241
                    + DP CG+G FL  A N++ +    + I                       
Sbjct: 390 TPQKVSELRILDPACGSGSFLLGAYNYLLNWHHEYYINLKNKNRLKDQIYKGKNNEWHLT 449

Query: 242 -----------PHGQELEPETHAVCVAGMLIRRLESDPR---------------RDLSKN 275
                       +G +++ +   V    +L++ LE + +                +L  N
Sbjct: 450 VKEKKRILLNNIYGVDIDHQAVEVTKLSLLLKVLEGENKDVIEAQQKLFKERALPNLEDN 509

Query: 276 IQQGST-----------------------------LSKDLFTGKRFHYCLSNPPFGKKWE 306
           I+ G++                                D+F    F   + NPP+ +   
Sbjct: 510 IKCGNSLIGPEIYDDSKFDLKQEDIKRINPFDWKNEFSDVFNNGGFDTVIGNPPYIRIQA 569

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                  KE    E+  +       S G+    +    K     N  G  + +L      
Sbjct: 570 M------KEWAPIEVEFYKEKYYSASKGNYDIYVVFVEKGLELLNEKGLMSYILPHKFF- 622

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEE 417
                    ++R  + + + +  +V      +F      T L  LS  K ++
Sbjct: 623 ---NAKYGQQLRLIISDGENLNKVVHFGDQQVFENATTYTCLLFLSKSKQKK 671


>gi|163868211|ref|YP_001609419.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017866|emb|CAK01424.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1647

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 125/452 (27%), Gaps = 55/452 (12%)

Query: 44   LECALEPTRSAVREKYLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
            L       R A    +     +  D    E  +++ G        +     G+   +NN 
Sbjct: 764  LSDEKGKARCAFEAFHKELKSNLNDSITQEEALEMLGQHLVTRPVFEALFEGNEFVQNN- 822

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                 S S   + I  + D +       +    Y   K  +     P    + ++  +YE
Sbjct: 823  -----SISQAMERILAELDKTDIKQESLELQGFYNSVKFRASGITEPQARQNLII-KLYE 876

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGF 219
                +   + ++      TP +VV      + D   +   K       ++ DP  GTG F
Sbjct: 877  DFFSKAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTF 936

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--------------LIR-RL 264
            +T  +          +       H  E+    + +    +                   L
Sbjct: 937  ITRLLQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSIMKGEYIPFKHIGL 996

Query: 265  ESDPRRDLSKNIQQ----GSTLSKDLFTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKN 318
                R    KN+ Q     ++   +            NPP  FG++ E D +        
Sbjct: 997  TDTFRMLEEKNLLQKLFKENSEYLEHQKKLNIQVIFGNPPYSFGQRSENDNNPNTSYPIL 1056

Query: 319  GELGRFGPGLPKIS----DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             E  R    L        +      +          +  G    V ++S +     GS  
Sbjct: 1057 DERIREKYILKSTKIINRNKLYDSYIRAIRWASDRIDNAGVIGFVTNASFI----NGSSM 1112

Query: 375  SEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERR 419
              +R+ L+E      I  L  +              +F   +     + IL      ++ 
Sbjct: 1113 DGLRKCLVEEFSSLYIFHLRGNQRTSGEISRKEGGKIFGEGSRAPIAISILVKNPNAQQH 1172

Query: 420  GKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            GK+   +  D            +  + D   +
Sbjct: 1173 GKIYFRDIGDYLNREEKLTIIEKFRSIDGITR 1204


>gi|312870427|ref|ZP_07730548.1| conserved domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094044|gb|EFQ52367.1| conserved domain protein [Lactobacillus oris PB013-T2-3]
          Length = 334

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 102/300 (34%), Gaps = 42/300 (14%)

Query: 128 EKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           E      K  +    +  E+H        +  + +    +   + +  A   MTP  +  
Sbjct: 46  EDGVPDKKTVEQLEKLYQEMHLKDASAETIRQVLQLSFLKVIRKDAIQANHQMTPDTIGF 105

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   L+   +     + P    T++DP  GTG  LT  +N +    +       +  +G 
Sbjct: 106 LMAFLI---EKISKLDRPS---TIFDPAVGTGNLLTTIINQLQQASAE-----PIHGYGI 154

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +P    V  A + ++ L+ D     + N                    +++ P G   
Sbjct: 155 DNDPAMLEVASASVALQGLDVDLFHQDAIN----------ALDIPECDLAVADLPIGYY- 203

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 +++  KN +  R   G          ++ HL  +  +     G   + L  S L
Sbjct: 204 -----PLDQNTKNYK-TRAQKGHS--------YVHHLLIEQAMNYLRPGGFGVFLVPSNL 249

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL 424
           F  +         +W+     ++ ++ LP +LF   N    + +L     + ++  KV L
Sbjct: 250 FQTKEA---QPFIQWMHSVGYLQGLINLPAELFANQNAQKAILLLQRHGGKSKQAVKVLL 306


>gi|304390893|ref|ZP_07372845.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325776|gb|EFL93022.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 179

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKT 415
           A ++ +  LF   + + E  +RR L+EN  +EAI+ +P+ +F   + ++T + + +    
Sbjct: 4   ACIVPNGVLFRSNSKAYEQ-LRRELVENQKLEAIIYMPSGVFKPYSGVSTAILVFTKTDA 62

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS--------RENGKF--- 464
                 V L N          + K+      D    IL  + +        R    F   
Sbjct: 63  GG-TDDVWLYNM--EGDGYTLDDKRDPDEKHDDIPDILSRWRNLGAERDRARTEKSFLVS 119

Query: 465 -SRMLDY-RTFGYRRIKVLRPLRMSFILDKTGLARL 498
            S +++    F + +       R+ +   +  L  L
Sbjct: 120 KSEIVENGYDFSFNKYTETVYERVEYPPTEEILDDL 155


>gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
          Length = 561

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 93/327 (28%), Gaps = 70/327 (21%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
             +     F+ + L  +     ++  +Y+  +      V      + T R V        
Sbjct: 99  RTHNFVHKFAQVVLPEEF---DLLGTVYQSFL---TEGVKNSTGSYYTERSVAQ------ 146

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
               + L         +  DP CG+G FL  A                L   G + +P  
Sbjct: 147 ----ELLDSLEAKPGASFLDPCCGSGTFLILAQEM------------GLKICGMDSDPIA 190

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +  A +++   +  P   +         +++     +RF +  +NPP+  K +     
Sbjct: 191 VMIAKANLILSGAKEYPDVRVI------DFVNRWKSERRRFDFAATNPPWSSKTKNVYAD 244

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           V                           M   + L+     GG+ A ++  S L      
Sbjct: 245 VSSFF----------------------FMKTLSLLK----SGGKLAFLMPISML----NI 274

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-----RGKVQLIN 426
           +     R  L  +  +  I    T  F          +    K  ER      G+++ I 
Sbjct: 275 ASHRLFREHLFSDCRLLEIRKFDTK-FSGVQTDFVSILAEKAKPAERFRMNESGEIREIP 333

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQIL 453
            +    + +           +   +IL
Sbjct: 334 LSIFQLTEQKTIFSATEPEVEIICKIL 360


>gi|222778489|ref|YP_002576126.1| DNA methylase/helicase [Campylobacter lari RM2100]
 gi|222539774|gb|ACM64874.1| DNA methylase/helicase [Campylobacter lari RM2100]
          Length = 1934

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 137/462 (29%), Gaps = 75/462 (16%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSG-------IELHPDTVPDR 153
           Y+ S  D  +   +    S TI +  +     +      FSG        +         
Sbjct: 198 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDFQNKEWEKE 257

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               I       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 258 FKELINTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDNHTKEIFEPS 313

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                +L 
Sbjct: 314 AGIGSFLSYAKNY----------SDKYRFTCIELDTMSSNILK--------------NLY 349

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 350 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKIIDPN--------------NPTLNKTSV 395

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 396 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNYIAEQATFLGAVRL 445

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           P + F     T + T +      K          IN + L      E    R    ++R 
Sbjct: 446 PNNAFKKRANTEVTTDIIFFKKGKD-------LNINNSWL---ESVEYYDNRFAEAEKRG 495

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-SP 509
              D++      ++ +       G   IK  +  +    LD     +   +   + L   
Sbjct: 496 MHTDVFNDFRINEYFKKNPQNILGKMDIKSSQYGKDLVCLDDGRNLKEALENFVKSLPKD 555

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
           +++     I     +        +++     K  +    K K
Sbjct: 556 IYKYQETKIKLSYYRIDKESPEYQNYSNALNKLKDGNYFKYK 597


>gi|212715992|ref|ZP_03324120.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661359|gb|EEB21934.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 73

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           N IW  A+ +    +  D+ K+ILPF +LRR ECALEPTR  V  +  A    + D   
Sbjct: 11 VNDIWSIADYVRDVIRPADYNKLILPFAVLRRFECALEPTRDKVLARKKAAMWDDADTGE 70

Query: 72 FVK 74
           ++
Sbjct: 71 VLE 73


>gi|325849557|ref|ZP_08170795.1| hypothetical protein HMPREF9246_0101 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480038|gb|EGC83115.1| hypothetical protein HMPREF9246_0101 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 152

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 3/136 (2%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-- 119
             G +   +    +A   F+   E     + S  T   +   I     + +      +  
Sbjct: 2   EDGEDYAEDRDEYLAKNIFFVPKEARWEYVASNATIPEIGQLIDQTMISIEEENPKLNGI 61

Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                AR E       ++   F  ++L        ++   +E+ I +F S     A +F 
Sbjct: 62  LPKNYARPELDKRRPGEVVVLFDNLKLKDHGSSKDILGRAHEYAIAKFASLEGRNAGEFY 121

Query: 179 TPRDVVHLATALLLDP 194
           TP  +V     +L   
Sbjct: 122 TPTSIVRTIVEILEPF 137


>gi|327412865|emb|CAX67872.1| putative membrane protein [Salmonella bongori]
          Length = 647

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 61/181 (33%), Gaps = 11/181 (6%)

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            E +   + S        S   +   +     +        +R +   +   + +   G+
Sbjct: 437 PEVNRWQVFSDFVHMAACSLYNAIHRDEAFEADYMQRVGRYSREDANNMSRLLAEVIEGL 496

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E      P   +  I+ +L        +     + TP +V +  + ++L    ++     
Sbjct: 497 EF----CPTDFLGQIFMNL-----ELGNTRHGQYFTPYNVCYTMSRMILSDRLSVLTSGE 547

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T+ DP CG GG +      + + G +      ++ +  +++P    +C   + +  
Sbjct: 548 RDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYCVDIDPVAAMMCYIQLSLMG 605

Query: 264 L 264
           +
Sbjct: 606 I 606


>gi|300813099|ref|ZP_07093477.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495940|gb|EFK31084.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 332

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 98/321 (30%), Gaps = 43/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           S +D     F+  +  S   R+E      K           L            +Y  L+
Sbjct: 25  SLADALVETFD--NLESGKIRVEMGAPDQKTVAELKERYAALDYKNWSKAQKEQVYGLLV 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP     L   +L    D L    P   + L DP  G+G  L   
Sbjct: 83  LKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSV 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A               G + + E   +      +  L++D          Q +   
Sbjct: 136 DQQLAAQNH---SEDRFDLVGLDNDEEMLNLADVAAHLAGLKADF-------YCQDALTG 185

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +         +S+ P G        A +   KN +L        +  +G     +   
Sbjct: 186 WPVKP----DVVVSDLPIG------FYANDDNAKNFDL--------RTKEGHAYAHVLFV 227

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            ++       G A +++  + L     G+  ++   WL     ++AIV LP+ LF     
Sbjct: 228 EQIVKNLAEDGFAFLLVPQNML----TGTVGADFMPWLASKVYLQAIVQLPSSLFQSKIS 283

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + I  N    +   +V L
Sbjct: 284 QKSILIFQNHGQSKPPKEVLL 304


>gi|289192475|ref|YP_003458416.1| N-6 DNA methylase [Methanocaldococcus sp. FS406-22]
 gi|288938925|gb|ADC69680.1| N-6 DNA methylase [Methanocaldococcus sp. FS406-22]
          Length = 999

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 75/516 (14%), Positives = 153/516 (29%), Gaps = 56/516 (10%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFS 108
               A+ E +     S++  E F      +  Y       +  G           I    
Sbjct: 182 EEIKALYEAFKEHLISDMKKEEFADAYAQTIVYGLFMARFNIEGELTKEKVAFKGIPKSL 241

Query: 109 DNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRR 165
                IF+    D    +  +    +      +   IE     V  +    + YE  +  
Sbjct: 242 RVIHEIFKHIASDLPDYLDWIVDEIITILNNIDIRKIEDSFKIVGKEDAFLHFYEDFLAS 301

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +  E+ +    + TP  VV      + +   D   K        + DP  GTG FL   +
Sbjct: 302 YNPELRKSKGVYYTPLPVVEFIVNSVDEILKDRFGKRLHDENVRILDPATGTGTFLATVL 361

Query: 225 NHVADCGSHH------KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNI 276
             V     H       K   +   +G E+    + V      ML+       R +   N+
Sbjct: 362 ERVHKNVKHTLFHVYLKERLLKNIYGFEILISPYLVAHLKLSMLLHNWHITLRGEERFNV 421

Query: 277 QQGST----------------LSKDLFTGKRFHY------CLSNPPFGKKWEKDKDAVEK 314
              +                 L K+     +          + NPP+  +    +  + +
Sbjct: 422 YLTNALDLMRSPKQSGLFERILDKEREEADKVKKEVNIFAVIGNPPYEVR--ASEGWIHE 479

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
             K+  LG       K       ++  +   + ++  NG G    + ++S L     G  
Sbjct: 480 LMKDYLLGLGVEKEKKKGALQDEYVKFIRFAQWKIEQNGKGIVGFITNNSYL----DGLV 535

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
              +R+ L+E      I+ L  ++                + +E    +Q      ++  
Sbjct: 536 HRRMRQCLMEVFDEIYILNLHGNV-------------RRGEKDENVFDIQQGVCIGIFVK 582

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           +R    K           + D  +++   K+   L+  T      K L+P    +     
Sbjct: 583 LREGKHKAEDCKVYYYSIVHDAGLTKREDKYE-FLENNTIKTVEWKELKPKEPYYFFVPK 641

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
            L+  +    + KL+ + + +   I+      +  +
Sbjct: 642 DLSLEDEYNKFLKLTDIFKIYGSGIVSGKDDALIQF 677


>gi|296135119|ref|YP_003642361.1| superfamily II DNA/RNA helicase [Thiomonas intermedia K12]
 gi|295795241|gb|ADG30031.1| superfamily II DNA/RNA helicase [Thiomonas intermedia K12]
          Length = 1041

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/399 (12%), Positives = 105/399 (26%), Gaps = 52/399 (13%)

Query: 41  LRRLECALEPTRSAVREKYLAFGG-SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            RR     +    AV +              +F   A     +  E     LG  + R  
Sbjct: 150 FRRAVEQFKADLPAVLDALRHMIDVEERGNPAFRAAAARFLTHAQEAINPALGEADVREM 209

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIA-------------------RLEKAGLLYKICKNF 140
           L  +I    +    +F+D DF                        +  K    Y      
Sbjct: 210 LVQHI-LTEEIFAKVFDDADFHRQNNVARELYALEAAFFTGALKRQTLKGLEPYYAAIRA 268

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +  ++         +  IYE+  + + ++ ++      TP ++V           +  F 
Sbjct: 269 AAAQIGSHGEKQTFLKAIYENFYKVYNTKAADRLGVVYTPGEIVRFMIDGADWLCEQHFG 328

Query: 201 ES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
            +       + DP  GTG F+ + + H     +  K       H  E+    + V    +
Sbjct: 329 RNLIDQGVDILDPATGTGTFICELLEHFRGQPAKLKHKYQHELHANEVAILPYYVANLNI 388

Query: 260 L--------------------------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                                      +         DL  ++ + +         +R  
Sbjct: 389 EATYAAISGEYAEFPSLCFVDTLDNVGLHTAAKGATADLFGSVSEENVARIKRQNARRIS 448

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELP 349
             + N P+    + + D  +         R        S      L  +  +        
Sbjct: 449 VIIGNTPYNANQQSENDNNKNREYPAIDARIKQTYIAQSTAQKTKLYDMYARFFRWASDR 508

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            N  G  A V + S + +         + +   E  +++
Sbjct: 509 LNENGVLAFVTNRSFIDSRTFDGFRKTVAQEFAEIYVVD 547


>gi|312887841|ref|ZP_07747428.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
 gi|311299660|gb|EFQ76742.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
          Length = 163

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           ++   +  I+ LPT +F+   + T +       +E   G  + +   D+ ++  + GK+ 
Sbjct: 1   MDKCNLHTILRLPTGIFYAAGVKTNVLFFERGTSE--TGNTKKVWFYDMRSNTHSFGKRT 58

Query: 442 RIINDD------------QRRQILDIYVSRENGKFSRML-DYRTFGYRRIKVLRPLRMSF 488
                                 + + Y    N +   ++ D R   + R ++      + 
Sbjct: 59  PFTRVAFDGFVHAYTGGIHIDDVFNTYDGNVNNEQRAIIQDSRWSCFTRKEIE---NKND 115

Query: 489 ILDKTGLARLEADITWRKLSPLH 511
           ILD   +   +  I  +  +P+ 
Sbjct: 116 ILDLGLIQEKDYSIENQDNNPIE 138


>gi|209524848|ref|ZP_03273394.1| DNA or RNA helicase of superfamily II [Arthrospira maxima CS-328]
 gi|209494727|gb|EDZ95036.1| DNA or RNA helicase of superfamily II [Arthrospira maxima CS-328]
          Length = 1026

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIR 207
           +     ++ +YE   + F   V++      TP+ +V      + +     FK+S      
Sbjct: 284 SEKQHFLNTVYERFFQGFAVNVADTHGIVYTPQSIVDFMVRSVDEILRTEFKKSLSDKGV 343

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
            + DP  GTG F+   M  +      HK    L  H  E+    + +    +
Sbjct: 344 HILDPFVGTGNFIMRIMREIRKTALSHKYQQEL--HCNEVMLLPYYIASMNI 393


>gi|150024355|ref|YP_001295181.1| type II endonuclease-methyltransferasefusion protein
           [Flavobacterium psychrophilum JIP02/86]
 gi|149770896|emb|CAL42361.1| Probable type II endonuclease-methyltransferasefusion protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1003

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 71/495 (14%), Positives = 148/495 (29%), Gaps = 104/495 (21%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED------------ 176
              +L+K  +N S  +     V   ++ +I+E+ +       ++   +            
Sbjct: 329 DDAVLFKHTENLSNYDF-ASEVDVNILGHIFENSLNELDEIKAQLEGESIDKTKTKRKKD 387

Query: 177 --FMTPRDVVHLATALLLDPDDALFKESPGMIR--------------------------- 207
             F TP+ +        +       K    ++                            
Sbjct: 388 GVFYTPKYITKYIVENTIGKLCEEKKTELQLVDEDYTTDKKRQKKTLQALIDKVETYRSW 447

Query: 208 ----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP------------------HGQ 245
               T+ DP CG+G FL  A++ +     +       +                    G 
Sbjct: 448 LLQLTICDPACGSGAFLNQALDFLIAQHQYIDELKAKLFGDTFVLSDVENSILENNLFGV 507

Query: 246 ELEPETHAVCVAGMLIRRLESDPR-RDLSKNIQQGSTLSKDL-----------------F 287
           +L  E+  +    + +R  + + +  DLS NIQ G++L  D+                 F
Sbjct: 508 DLNEESVEIAKLSLWLRTAQPNRKLNDLSSNIQCGNSLIDDVAVAGDKAFNWQTAFEKVF 567

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   + NPP+      + + +  ++      +F     KI             K  
Sbjct: 568 AKGGFDVIIGNPPYVLCQPSNTNEITLDY----YKKFEVASYKID-----LFHLFFEKSI 618

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+   +  ++ L          ++R ++L N  IE IV     +FF  ++    
Sbjct: 619 TLLKEKGKLGFITPNTYL----TNKYIQKLRNYILNNTSIETIVNYEDSVFFDASVDVAT 674

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN--GKFS 465
            IL   K      ++     ++    +    KK+    +       + +  ++    KF+
Sbjct: 675 IILKKEKVLNESIQIF---NSNFGKIVELGSKKQVDWQNANE----NTFNIKKEFQLKFN 727

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             L +   G     +    R S I +  G       I   +++    S        + + 
Sbjct: 728 NCLKFEDIGNSYFGIQAYDRKSSISNIKGNDNFLPLIDGAEINRYELSTPNKYFNFISEN 787

Query: 526 IYPYGWAESFVKESI 540
           I   G    + +  I
Sbjct: 788 IKSGGDFSIYERLRI 802


>gi|296283364|ref|ZP_06861362.1| type I restriction-modification system, M subunit, putative
           [Citromicrobium bathyomarinum JL354]
          Length = 1044

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 95/302 (31%), Gaps = 58/302 (19%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +P   +S+IYE  +    +E +     F TP  +V      +L        +      
Sbjct: 331 DVIPLEFISSIYETFV----TERASRDGIFYTPPHLVDFVLDRVLP------WQGEEWDL 380

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCV 256
            + DP+CG+G FL  A   +            +              G +++P    V  
Sbjct: 381 KILDPSCGSGIFLVKAFQRLVHRWKIGNPGQPVRAELLRRLLERNIFGVDIDPHAVRVAC 440

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLS-----KDLFTGKR-----------FHYCLSNPP 300
             + +   +    R     +             D F   +           F   + N P
Sbjct: 441 FSLYLAMCDEIEPRHYWTQVSFPPMRDIRLIRSDFFAETQCGFSCETDTATFDLIIGNAP 500

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +G     D  A  +   +   G        + +  +  L  +A  +EL  + G  A I  
Sbjct: 501 WGDGVITD--AAREWAADERRG------WPVPNNDIGGL-FVAKAMELITDAGHVALIQS 551

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF----------RTNIATYLWIL 410
           +++ LFN    + E   RR LL    +EAI  L    F            +     + +L
Sbjct: 552 ANTLLFNIANTAIE--FRRKLLLTWRVEAIYNLSALRFSVFKRKTHTTKTSAAPVCIVVL 609

Query: 411 SN 412
           + 
Sbjct: 610 AK 611


>gi|282878650|ref|ZP_06287419.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
 gi|281299195|gb|EFA91595.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
          Length = 1020

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/396 (14%), Positives = 125/396 (31%), Gaps = 77/396 (19%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + + +   ++S IYE+ +             F TP ++V L  +      D L      
Sbjct: 309 FNFEIIQIELLSEIYENFLGEL----KHERGQFYTPYNLVELILS------DKLPISKSN 358

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHA 253
               + DP CG+G FL ++   +     +      +             +G E++     
Sbjct: 359 YNVKILDPACGSGIFLVESYKRLIKRWKNANNTNKISFEKLKNLLLDNIYGIEIDETAIK 418

Query: 254 VCVAGMLIRRL-----------------------ESDPRRDLSKNIQQGSTLSK-DLFTG 289
           V    + +  +                       E    ++  +N+ +  T+ + D    
Sbjct: 419 VAAFSLYLALIDELDPKTLWIETNYQLPYLIFDSEDTNIKNQGRNLWRKDTIGEVDTHLF 478

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    + NPPFG K   +     KE+ +                    ++   +K  + 
Sbjct: 479 PKVDLIIGNPPFGTK---NLPQTIKEYCSKYKFSNEY------------VLPFIHK-SVE 522

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL----------PTDLFF 399
               G  A++ +S  L N +        R+WL   + +E +  L             LF 
Sbjct: 523 FCPTGEIALIFNSKVLTNTQKP--YQNFRKWLFNANYVEKVYNLSILRKTPKHFGGQLFA 580

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                  + +       E   +     A   +  I++      +I++   +++  I    
Sbjct: 581 SAVGPVSI-VYFQHIAPETISETIEYWAPKTY--IKSSIIDGVVIDNSDIKELPRIECQN 637

Query: 460 ENGKFSRMLDY-RTFGYRRIKVLRPLRMSFILDKTG 494
            N K  ++  +     +R +K L+   +    DKT 
Sbjct: 638 PNSKIWKVALWGNFNNFRLLKKLQKTTLKDYFDKTD 673


>gi|160932540|ref|ZP_02079930.1| hypothetical protein CLOLEP_01378 [Clostridium leptum DSM 753]
 gi|156868499|gb|EDO61871.1| hypothetical protein CLOLEP_01378 [Clostridium leptum DSM 753]
          Length = 289

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 10/214 (4%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
           T+ Y    +          S         +   E           ++   ++      + 
Sbjct: 71  TNRYRAWDVWRDFVTMFACSLSNPLDKEHRDKREALYLEIIKKYNKQEQEVFPELAAQTV 130

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           + L  D   D  + +I+  L     +  +E      TP  V  L   + +  D+ + K  
Sbjct: 131 LALEEDPEQD-FLGSIFMSL-----NLGNEHNGQIFTPYHVCKLMAEVTM--DNTVQKVE 182

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGML 260
                ++ DP CG G  L  A++        ++      L+   Q+++     +C   + 
Sbjct: 183 QDGYISINDPCCGAGATLIAAIHAARKQLEKTNLNYQNHLLVVAQDIDETVALMCYIQLS 242

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +  +    +   S          K+ +     +Y
Sbjct: 243 LLGVAGYVKVGNSLTEPMTDNDDKENYWFTPMYY 276


>gi|322412357|gb|EFY03265.1| helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 1998

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 120/432 (27%), Gaps = 88/432 (20%)

Query: 20  EDLWGDFKHTDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVA 76
            +L       DF  VI   P   LR LE   +       E+       + +L+ F     
Sbjct: 483 NNLIRIELQNDFTDVIEQNPVLFLRTLEDITQALHVPSVEEKEEVEEPSQELDLFSFMDM 542

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLEKAG 131
                  S+  + T  S+N R   +    S  +    + E     DF F   +       
Sbjct: 543 EEQNEPVSQ--VITSLSSNKREAKQEEALSEDELEPEVTETPPTTDFHFPEDLTDFYPKT 600

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTP-----RDV 183
              K+  N + I L      +   +   E  L+ ++        E F    P     R+ 
Sbjct: 601 TRDKVETNVAAIRLVKSLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREA 660

Query: 184 VHLATA-------------------LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +                        LL+       ++       + DP+ GTG F     
Sbjct: 661 LKTLVTEKEYSDMKQSSLTAYYTDPLLIREMWNKLEQDGFTGGKILDPSMGTGNFFAAMP 720

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           NH+ +             +G EL+  T  +         L  +   ++            
Sbjct: 721 NHLRENSE---------LYGVELDTITGTIAK------HLHPNSHIEVKG-------FET 758

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F    F   LSN PF      D              R+        D   +   +   
Sbjct: 759 VAFNENSFDLVLSNVPFANIRIAD-------------SRY--------DKPYMIHDYFVK 797

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K     + GG+ AI+ S+  +           I + + E       V LP   F     T
Sbjct: 798 KSHDLVHDGGQVAIISSTGTMDKRTEN-----ILQDIRETTDFLGGVRLPDTAFKAIAGT 852

Query: 402 NIATYLWILSNR 413
           N+ T +      
Sbjct: 853 NVTTDMLFFQKH 864


>gi|169347027|ref|ZP_02865969.1| putative restriction enzyme alpha subunit [Clostridium perfringens
           C str. JGS1495]
 gi|169296710|gb|EDS78839.1| putative restriction enzyme alpha subunit [Clostridium perfringens
           C str. JGS1495]
          Length = 292

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 56/219 (25%)

Query: 209 LYDPTCGTGGFLTDAM-NHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           + D TCG+G FL  AM N + + G       +        G E + E  A+  A MLI  
Sbjct: 1   MIDATCGSGAFLVKAMSNMIQEVGGLNAKEAEDIKQNKLFGIEFDREIFALACANMLIH- 59

Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 +D   N++Q  T  +        K     L NPPF +K                
Sbjct: 60  ------KDGKTNLEQLDTREEQACKWIKSKNISKVLMNPPFERK---------------- 97

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                 G  K           +   +      G + A +L    L        E +  + 
Sbjct: 98  -----YGCKK-----------IVENVLNNVPNGIKCAFILPDKKL--------EKDKMQN 133

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LL+   +  I+ LP  LF    I T +++    K +  +
Sbjct: 134 LLKKHTLNMIIKLPEKLF-DAGITTSIFVFETGKPQGDK 171


>gi|166364659|ref|YP_001656932.1| N-6 DNA methylase [Microcystis aeruginosa NIES-843]
 gi|166087032|dbj|BAG01740.1| N-6 DNA methylase [Microcystis aeruginosa NIES-843]
          Length = 429

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 99/271 (36%), Gaps = 45/271 (16%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  V  L           + K++P    T+ DP  G G F  +A+   +  
Sbjct: 18  RKDYGQFFTPVCVARLMVQ-------WVLKDNP---ETVLDPAFGLGVFYDEAIKTPSGN 67

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H          G E++           L R  +S   R ++ +  +  T        +
Sbjct: 68  QVH--------FIGYEIDRNIF-----EFLNRNGDSPYLRVINSDYLEAET--------E 106

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   + NPP+  +++K     +   K  E  + G  L   S+ S LFL+    +L++  
Sbjct: 107 KFDGIICNPPY-MRFQKFLKRHDILPKIEE--KIGKKLIGYSNISSLFLVKSLRELKI-- 161

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYLW 408
              G  A ++       G       EI++ LLEN L++ I+      ++F        + 
Sbjct: 162 --NGNLAYIMPFEFFNTGYG----KEIKKSLLENHLLKQIIIFDNEKEIFPEATTTVCVL 215

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L     ++   K+  I  +D    I +  K
Sbjct: 216 -LCKNDGKKETIKILQIKKSDEIDKISDISK 245


>gi|153955312|ref|YP_001396077.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219855732|ref|YP_002472854.1| hypothetical protein CKR_2389 [Clostridium kluyveri NBRC 12016]
 gi|146348170|gb|EDK34706.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569456|dbj|BAH07440.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 562

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/462 (12%), Positives = 136/462 (29%), Gaps = 94/462 (20%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  V+  +YE   +       +    F TP    +     +++   +         
Sbjct: 2   EKRYDSTVLGEVYE---KSMNKSERKERGSFYTP----YFIVEYIVENTLSNLDVKLNPF 54

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILV----------------- 241
             + DP+CG+G FL  A + +    + +        K    ++                 
Sbjct: 55  VKVLDPSCGSGYFLLKAYDILMRKFNENLESIRCKFKDERYIIETKNGLKNIYGLEYWQY 114

Query: 242 -----------PHGQELEPETHAVCVAGMLIR-RLESDPRRD---------LSKNIQQGS 280
                       +G +L+ +   +    ++ +  +  + + +           K  ++  
Sbjct: 115 SNLSYHILKECIYGADLDEKAVELAKINLIGKSGINFNFKNNIICCNSLIRWEKEHKEHE 174

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                 F  +++ Y L NPP+     K K  +E   K      +       +    L+  
Sbjct: 175 FSHIGEFWEQKYDYILGNPPWVSLSRKHKKDIEDNLKEYYSKNYEGNTYLPN----LYEY 230

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            +   +E+    GGR   ++         +     + R+ LLE   I             
Sbjct: 231 FIKRSMEILKV-GGRFGFIIPD----RLASNLQYKDFRKKLLEKYNI------------- 272

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                 + ++   K  E      +I A + +       +  +I  +  ++ I ++    E
Sbjct: 273 ------INVVFEIKFPEINTDTMIIIAENKY------SRHNKIKVNVYKKSIYNV----E 316

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             ++++ L+   F Y      + L +   +DK  L   +   T+       +      L 
Sbjct: 317 QNEYTKNLNCEFFYYHS---SKSLHIKNSIDKNSLVLGDICKTFTGFIGYKEKITPFRLN 373

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
               +I      + F   +    +     +K   S I     
Sbjct: 374 KNQVEILKGENIKKFQVLNNYYYDFIPCNIKGGTSDIKKLTT 415


>gi|218297123|ref|ZP_03497794.1| N-6 DNA methylase [Thermus aquaticus Y51MC23]
 gi|218242537|gb|EED09075.1| N-6 DNA methylase [Thermus aquaticus Y51MC23]
          Length = 1214

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 98/317 (30%), Gaps = 56/317 (17%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +  +     V   ++ ++Y H       E       + TP +VV      +       
Sbjct: 486 KLAHYDFR--DVDQDIIGHLYAH---YATEEHRHHTGMYYTPPEVVDYILDRV------G 534

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPH----------GQE 246
           F+       TL DP CG+G FL  A   V +       KIP   +P           G +
Sbjct: 535 FRGKEVATATLLDPACGSGTFLVRAARRVLEAFRDKGGKIPEENLPFALKAVAESLVGLD 594

Query: 247 LEPETHAVCVAGMLIRRLE--------SDPRRDLSKNIQQGST----------LSKDLFT 288
           + P    +    +LI+ ++                  +    T          L  DL+ 
Sbjct: 595 VNPFACYLAEINLLIQVIDLLEGIKHLGQDVGLDRFRVYNTDTLVARFPSAAFLDGDLWP 654

Query: 289 GKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            ++       F + + NPP+ +             KN    R G          +   + 
Sbjct: 655 EEKVKLTPEAFDFVVGNPPYVRADAPGMKEYRDAVKNQLPLREGVEGVLQKKWDL--YVP 712

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFR 400
                      GG+  +++S S      + S    IR  LL++ L+E +  L    LF  
Sbjct: 713 FVALALEWAKPGGKVGLLVSVSI----ESASFAEAIRNRLLQHTLLE-VAHLNGKALFPD 767

Query: 401 TNIATYLWILSNRKTEE 417
             +   + ++      E
Sbjct: 768 AVVDNTILVVQKASPPE 784


>gi|104773773|ref|YP_618753.1| hypothetical protein Ldb0685 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422854|emb|CAI97514.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 332

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 98/321 (30%), Gaps = 43/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           S +D     F+  +  S   R+E      K           L            +Y  L+
Sbjct: 25  SLADALVETFD--NLESGEIRVEMGAPDQKTVAELEERYAALDYKNWSKAQKEQVYGLLV 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP     L   +L    D L    P   + L DP  G+G  L   
Sbjct: 83  LKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSV 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A               G + + E   +      +  L++D          Q +   
Sbjct: 136 DQQLAAQNH---SEDRFDLVGLDNDEEMLNLADVAAHLAGLKADF-------YCQDALTG 185

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +         +S+ P G        A +   KN +L        +  +G     +   
Sbjct: 186 WPVKP----DVVVSDLPIG------FYANDDNAKNFDL--------RTKEGHAYAHVLFV 227

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            ++       G A ++L  + L     G+  ++   WL     ++AIV LP+ LF     
Sbjct: 228 EQIVKNLAEDGFAFLLLPQNML----TGTVGADFMPWLASKVYLQAIVQLPSSLFQSKIS 283

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + I  N    +   +V L
Sbjct: 284 QKSILIFQNHGQSKPPKEVLL 304


>gi|308229538|gb|ADO24185.1| M.AseI [Aquaspirillum serpens]
          Length = 552

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 29/252 (11%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +E   K+ G S      +  +      ++  +        D   +  E  +  +  ++ +
Sbjct: 25  IEESAKILGVSSATIRNWVKTGYLEIISKGKISRNSVENFDKKISGVEKLNQRANKSKKD 84

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
                Y   +    I+L  + +    M ++YE  +             + TP  +V+   
Sbjct: 85  NHNHEYLAAEFLRKIDLGIEKIDS--MGDLYESGLS---DSYRNKEGIYYTPSYIVN--- 136

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
                 D    K       T  DP CG+G FL  A+       +           G + +
Sbjct: 137 ------DLLSLKNQLTGDETFCDPCCGSGNFLVRALEIGFKPEN---------IFGFDTD 181

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-K 307
                +       RR+        +                  + Y  +NPP+GKK E  
Sbjct: 182 HVAVEIAK-----RRILEKTGYKSNNIKCYDFLHLSVSEKAGSYDYIFTNPPWGKKIEQA 236

Query: 308 DKDAVEKEHKNG 319
           +K ++ K  K G
Sbjct: 237 EKKSISKILKGG 248


>gi|300724413|ref|YP_003713733.1| hypothetical protein XNC1_3596 [Xenorhabdus nematophila ATCC 19061]
 gi|297630950|emb|CBJ91627.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 228

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 22/206 (10%)

Query: 72  FVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
           F + A Y + Y       +   +     +  S             E +    TI + ++A
Sbjct: 15  FKQTARYQTRYQVFRDFCNCAMAAIHNKHCFS----------EELEQYYLK-TINKYKRA 63

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +  +I + FS + L     P+  + +++  L         +  + F TP  V  +   +
Sbjct: 64  DVD-RIVQLFSHVVLGLAQEPNDFLGSVFMRL-----ELGDKDLQQFFTPWSVARMMAQM 117

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            L     L +  P +  TL +P  G G     A + + + G  H     L  +  +++P 
Sbjct: 118 QLHDAAGLLQTQPFV--TLCEPCVGAGCITLAAADVLRELG--HDPLCSLWVYAIDIDPL 173

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNI 276
              +      +  + +      + + 
Sbjct: 174 AAVMAYIQFSLTGIPAAVTIGNALHD 199


>gi|308178806|ref|YP_003918212.1| site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
 gi|307746269|emb|CBT77241.1| putative site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
          Length = 1091

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 97/327 (29%), Gaps = 60/327 (18%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           H       V  ++YEH +  +  E  + +  F TP +VV   T L  +          G+
Sbjct: 305 HISQGRQDVYLHLYEHFLSAYNPERRKQSGSFYTPVEVVDSMTRLTDEALKKYLNTPEGL 364

Query: 206 IR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVPHGQELEPETHAV 254
                 + DP  GTG +    +  VAD  S +    +           +G EL+    +V
Sbjct: 365 SADTVAVIDPAMGTGTYPLSVLRQVADNSSKYGQGAVSDAVTSAAQRLYGIELQSGPFSV 424

Query: 255 CVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------------------- 291
               +   IR        D   N+    TL        R                     
Sbjct: 425 AELRLTQAIRDYGGSL-PDGGLNLYVADTLEDPKSGSSRQLSYTLQLIAEQRQRANKMKV 483

Query: 292 ---FHYCLSNPPFGKK------WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                 C+ NPP+  K      W +  D         +    G G  +    ++      
Sbjct: 484 ETPIQVCIGNPPYKDKSEGLGGWIELGDPNRPNTPLDDFRLPGNGKFEYVLKNLYVYFWR 543

Query: 343 ANKLEL----PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL----- 393
               ++    P +  G    + ++  L     G G   +R+W+ EN     I+ L     
Sbjct: 544 WAMWKVFESTPASHHGVVCFITATGYL----NGPGFRGMRQWIRENTSRGWIINLTPEGK 599

Query: 394 --PTDLF-FRTNIATYLWILSNRKTEE 417
             P +   F       + +    +  +
Sbjct: 600 QPPANTAVFNIETPVSIALFIRDQAND 626


>gi|237718472|ref|ZP_04548953.1| hypothetical protein BSCG_04899 [Bacteroides sp. 2_2_4]
 gi|229452179|gb|EEO57970.1| hypothetical protein BSCG_04899 [Bacteroides sp. 2_2_4]
          Length = 970

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 83/256 (32%), Gaps = 46/256 (17%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S  +     F TP  +V+   + L +   +             DP+ GTG F++     
Sbjct: 95  ASVKASTFTAFYTPPTIVNAIASSLGEHGVSPG--------RFLDPSSGTGNFVSA---F 143

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              C S     P +V +  E +  T  +      + RL  + + ++    +         
Sbjct: 144 RPQCHSASGNIPEIVAY--EKDLLTGRI------LARLHPEAQVNIKGFEELPP------ 189

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                F    SN PFG     D    +    NG   RF                +   K 
Sbjct: 190 HRNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRFALNSLHN---------YFFAKG 235

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNI 403
                 GG  A + S   + +  A      +R++L+    + + V LP +LF     T +
Sbjct: 236 LDAVREGGVLAFITSQGVMNSAMAYP----VRQYLMNRSRLLSAVRLPNNLFTDYAGTEV 291

Query: 404 ATYLWILSNRKTEERR 419
            + L IL      +R 
Sbjct: 292 GSDLIILQKDTLSQRE 307


>gi|284097505|ref|ZP_06385589.1| helicase domain protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830985|gb|EFC35011.1| helicase domain protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 268

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 25/227 (11%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +         + ++  K A   FY T + +++   S N    +           + +
Sbjct: 4   LAAEMKQIIEERYEADTDFKTAFNGFYETCKAAINPNLSQNAVEEMLVQHVLTERIFRTV 63

Query: 115 FEDFDFS---------------------STIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+  DFS                     S  A L      Y   +N +    H  +    
Sbjct: 64  FDHSDFSRRNIIASEIEKVIDILTRNDISRDAFLSPLDPFYNAIEN-AARNCHDFSQKQH 122

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212
           +++  YE   + F  +V++      TP+ +V      +       F  S       + DP
Sbjct: 123 LLNTFYEQFFQGFSEDVADTHGIVYTPQPIVDFMVNSVSHILKTEFGRSLSDEGVHIIDP 182

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
             GTG F+   M+ ++     HK    L  H  E+    + +    +
Sbjct: 183 FVGTGNFIVRLMHEISGAALQHKYQHEL--HCNEVMLLPYYIASLNI 227


>gi|163868201|ref|YP_001609409.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017856|emb|CAK01414.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1662

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/414 (12%), Positives = 117/414 (28%), Gaps = 51/414 (12%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++          +     G+   +NN      + S   +
Sbjct: 770  DAFHKELKNNLNSEIKQEEAIEMLAQHLVTRPVFEALFEGNEFVQNN------AISQAME 823

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             I  + D ++     ++    Y   K  +     P    + ++  +YE    +   + ++
Sbjct: 824  KILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFTKAFKKTTD 882

Query: 173  GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + D       K       ++ DP  GTG F+T  +       
Sbjct: 883  RLGIVYTPVEVVDFIIHSIDDVLRKEFGKSLGSRGVSILDPFTGTGTFITRLLQSDLIKP 942

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL-----------------ESDPRRDL 272
               +       H  E+    + +    +      L                 ++   ++L
Sbjct: 943  EDMEYKFRHDIHANEIVLLAYYIAAINIEATYHGLMKGDYIPFKHIGLADTFQTLKEKNL 1002

Query: 273  SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
               + + ++   +L           NPP+    + + D  +         R        S
Sbjct: 1003 IDGMLKENSEYLELQKKLNIEVIFGNPPYSIGQKSENDNAKNTPYPILDKRISETYAAQS 1062

Query: 333  DGSML-----FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              S++       +             G    V ++  +     G     +R+ L+E    
Sbjct: 1063 KASLIRGLYDSYIRAIRWASDRIKDRGVIGFVTNAGFI----TGHSMDSLRKCLVEEFSS 1118

Query: 388  EAIVAL--------------PTDLF-FRTNIATYLWILSNRKTEERRGKVQLIN 426
              I  L                 +F   +     + IL      ++ GK+   +
Sbjct: 1119 LYIFHLRGNARISGEPRKKEGDGIFGEGSRAPIAISILVKNPESQQHGKIYFRD 1172


>gi|218246498|ref|YP_002371869.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|218166976|gb|ACK65713.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 8801]
          Length = 1005

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 110/387 (28%), Gaps = 43/387 (11%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            + +   + + + F   +T          Y      +   ++      + + ++YE+  +
Sbjct: 233 NNIARELQGVIDTFFTGTTKRNTLGTIERYYAVIRRTAASIYNHQEKQKFLKSVYENFYK 292

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDA 223
            +  + ++      TP ++V      +       F K        + DP  GTG F+T+ 
Sbjct: 293 AYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFGKLLCDPGVEILDPATGTGTFITEL 352

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           + ++      +K    +  H  E+    + +    +     +     +   +I    TL 
Sbjct: 353 IEYLPKDKLKYKYQNEI--HCNEVAILPYYIANLNIEYTYKQKMGEYEEFDHICFVDTLD 410

Query: 284 KDLFTGKRFH---------------------YCLSNPPFGKKWEKDKD-----AVEKEHK 317
              FTGK+                         + NPP+  K E            +  K
Sbjct: 411 NTSFTGKQLDLFAMTVENTQRIKDQNDRQISVIIGNPPYNAKQENFNQNNANRKYTEIDK 470

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             +      G  +  +                 N  G  A + +SS L           I
Sbjct: 471 LIKDTYIKQGTAQNKNVVYDMYTRFIRWASDRLNKDGIIAFITNSSFLDALAFDGFRKSI 530

Query: 378 RRWLLENDLIEA-----IVALPTDLF-------FRTNIATYLWILSNRKTEERRGKVQLI 425
           +        I+       ++    +F       F T   T + IL   K  +  G     
Sbjct: 531 KDEFSYAYFIDCGGNVRAISGKDGIFICEKHTIFGTAAMTGIAILFLVKDSQATGNKIF- 589

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQI 452
              + +        K   +  +   +I
Sbjct: 590 -YANPFHVHELRENKLSYLQQNSISKI 615


>gi|206895091|ref|YP_002247705.1| HsdM, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206737708|gb|ACI16786.1| HsdM, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 203

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 29/211 (13%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +         L + +W  A     D  K T++ +    F  L+  +      R   RE
Sbjct: 1   MAQNNNKVDFHRLGSELWDIANIFRDDTLKTTEYLEEFSYFLFLKLFDE-----REKQRE 55

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           +     G+    +         F   +E  L++ G T   ++ E  I  +  N  +   +
Sbjct: 56  ELARLDGTKFVPD---LPNHLRFSTWAEKILASDGKTVKTDDGEFTIVDYVRNIFSELAE 112

Query: 118 FD-------------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                          F + I R+  +  + ++ K    +EL  +     VM   YE +++
Sbjct: 113 VKDHDGRDLSLFRRLFKNHIWRIRYSPTIKELIKRLKDLELEQNF---DVMGRAYEFVVQ 169

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + G +  +    + TPR ++H    L    +
Sbjct: 170 KLGEQ--KQYGQYFTPRHIIHFMVELADPGN 198


>gi|325125435|gb|ADY84765.1| Putative modification methylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 332

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 98/321 (30%), Gaps = 43/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           S +D     F+  +  S   R+E      K           L            +Y  L+
Sbjct: 25  SLADALVETFD--NLESGEIRVEMGAPDQKTVAELEERYAALDYKNWSKAQKEQVYGLLV 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP     L   +L    D L    P   + L DP  G+G  L   
Sbjct: 83  LKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSV 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A               G + + E   +      +  L++D          Q +   
Sbjct: 136 DQQLAAQNH---SEDRFDLVGLDNDEEMLNLADVAAHLAGLKADF-------YCQDALTG 185

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +         +S+ P G        A +   KN +L        +  +G     +   
Sbjct: 186 WPVKP----DVVVSDLPIG------FYANDDNAKNFDL--------RTKEGHAYAHVLFV 227

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            ++       G A +++  + L     G+  ++   WL     ++AIV LP+ LF     
Sbjct: 228 EQIVKNLAEDGFAFLLVPQNML----TGTVGADFMPWLASKVYLQAIVQLPSSLFQSKIS 283

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + I  N    +   +V L
Sbjct: 284 QKSILIFQNHGQSKPPKEVLL 304


>gi|256760965|ref|ZP_05501545.1| endonuclease and methylase LlaGI [Enterococcus faecalis T3]
 gi|256682216|gb|EEU21911.1| endonuclease and methylase LlaGI [Enterococcus faecalis T3]
          Length = 1576

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 73/474 (15%), Positives = 146/474 (30%), Gaps = 87/474 (18%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA-LFKESPGMIRTLYDPTCG 215
             +Y+          +E      TP +VV      + D  +A L K        + DP  G
Sbjct: 842  TLYDKFFSTAFKSTTERLGIVFTPIEVVDFIVKSVDDVLNAHLGKTLSSENVHIMDPFTG 901

Query: 216  TGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPE-----THAVCVAG-------MLI 261
            TG F+   ++++ +       K   ++  + QEL        ++ +           +  
Sbjct: 902  TGTFIVRTLSYLKEQLISGKIKKEDVIRKYSQELHANEIVLLSYYIAAINIESTFDEITG 961

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWE 306
            + L   P   +       ST   D    + F                  + NPP+  + E
Sbjct: 962  KDLGYTPFEGIVLTDTFESTEVPDTLDDEYFGSNDERLKRQQEVPITAIIGNPPYSARQE 1021

Query: 307  KDKDAVEKE-----HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             + D  +        +            +  +     L              G  A + +
Sbjct: 1022 SENDDNKNISYTNLDEQIREDYAQYTNVRNKNTLYDSLFRAFKWSTNRLKDKGVIAYITN 1081

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---------------PTDLF-FRTNIAT 405
            SS + +         IR+ L E      ++ L                 ++F   T ++ 
Sbjct: 1082 SSFIDSQTTSG----IRKDLFEQFNYIYVLNLRGAVRGKSGIDATKEGGNIFDILTGVSI 1137

Query: 406  YLWILSNRKTEE--------------------RRGKVQLI-------NATDLWTSIRNEG 438
             ++I     T E                     +G +Q I       +A + W + R+E 
Sbjct: 1138 NIFIKDGSNTHEVYYYDIGESLSKNQKLEFLANKGSIQSIDWVKTDPDANNDWINHRDED 1197

Query: 439  KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
                +  D +      +++S+  G  S   D   +G+ +  V+    +      + + RL
Sbjct: 1198 YLNFLPLDSELE---GLFLSKSLG-VSTNRDIWVYGFNKKSVIDNTEIMVENFNSEIKRL 1253

Query: 499  EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552
            + D T  KL+ ++Q          ++ I+  G   S  K  ++ N  +    K 
Sbjct: 1254 K-DYTGDKLTQINQEKDYISWSSGLKSIFKRGNEISLDKSKMRLNLYRPFTKKW 1306


>gi|39936439|ref|NP_948715.1| DNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650294|emb|CAE28817.1| possible DNA methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 1091

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 99/349 (28%), Gaps = 92/349 (26%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG----MIRTLYDP 212
             YE  +  + + + +    + TP +VV     L  +         P        T+ DP
Sbjct: 301 YFYEDFLEVYDNTLRKKTGSYYTPPEVVAAMVRLADEALRGELFGRPKGFASPDVTVADP 360

Query: 213 TCGTGGFLTDAMNHVADCGSHHK---------IPPILVPHGQELEPETHAVCV------- 256
             GTG FL   +  +A+     +                 G EL+    AV         
Sbjct: 361 AVGTGTFLLGVLRKIAETVKDDEGAGAVRGAIEAAAKRLFGFELQFGPFAVAQLRLIAEM 420

Query: 257 ----------------AGMLIRRLESDPRRD----------LSKNIQQGSTLSKDLFTGK 290
                             + I     +P  +          ++K+ ++ + + KD    K
Sbjct: 421 QALVATKTNPLPDIPELNLFITDTLGNPFVEEESLGQVYEPIAKSRREANAVKKD----K 476

Query: 291 RFHYCLSNPPFGKK------WEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                + NPP+ +K      W +     D V    +      +G G       ++     
Sbjct: 477 PITVVIGNPPYKEKAKGRGGWIESGSGGDLVAPMDRWKPPKEWGVGTHAKHLKNLYVYFW 536

Query: 342 LANKLELPPNGG------------GRAAIVLSSSPLFNGRAGSGESEIRRWLLEND---- 385
                ++  +G             G    +  +  L     G G  ++R  L E+     
Sbjct: 537 RWATWKVFGSGNYAATGFPDKDQEGIVCFITVAGFL----NGPGFEKMRADLRESCSDIW 592

Query: 386 LIEAIVALPTD--------LFFRTNIATYLWILSNR--KTEERRGKVQL 424
           +++     P          +F        + + + +  K      +V+ 
Sbjct: 593 VVDCS---PDGHQPEVSTRIFQGVQQPVSIVLAARKLGKAASEPARVKF 638


>gi|297529054|ref|YP_003670329.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
 gi|297252306|gb|ADI25752.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
          Length = 329

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 91/273 (33%), Gaps = 49/273 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRD------VVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           E + + F   V +G    + P        V      L+ +           +   + DP 
Sbjct: 71  EEIRKAFQLAVLKGMRKHVQPHHQMTPDAVSLFLAYLVREF------TRSHLALKILDPA 124

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GT   LT  +N +               +G +++     +           ++ ++   
Sbjct: 125 VGTANLLTAVLNGLR--------GKQAASYGSDVDDLLVKLAYVN-------ANLQKHPV 169

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +   Q S   + LF  +     + + P G  +  D D   +     + GR          
Sbjct: 170 QLFNQDSL--RPLFV-EPVDVVVCDLPVG--YYPDDDNAARFALKAKEGR---------- 214

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            S    + +   L      GG    ++ ++   + +AG    ++  +L E  +++ ++ L
Sbjct: 215 -SYAHHLFIEQSLRYTKE-GGYLFFLIPNTLFSSPQAG----QLNEFLKEAAIVQGVLQL 268

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGK-VQLI 425
           P  +F     A  + IL  +    ++ K V L+
Sbjct: 269 PLSMFKNDQAAKSVLILQKKGPNVKKPKHVLLV 301


>gi|326335113|ref|ZP_08201310.1| N-6 DNA methylase superfamily protein [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692643|gb|EGD34585.1| N-6 DNA methylase superfamily protein [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 966

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 117/375 (31%), Gaps = 58/375 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
            L++ LE  ++   + +          +      ++  G      S+      G+     
Sbjct: 206 ILIKYLEERMDNNGNKLLSDKYFQPYGSTSFNEVLRQKGKFADLLSDLDKHFNGNVFKWK 265

Query: 99  NLESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICK-NFSG-IELHPDTVPDRV 154
             E                 D S  + +   +K  L  +  +  F+         +P  +
Sbjct: 266 EEEQE----------ELRRLDLSIVAQLLNTDKKDLSSQQLEFGFTNWRYFEFSFIPVEL 315

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE  +        +    F TP  +  L     L   +  +++       + DP C
Sbjct: 316 ISRLYEEFLGE----QKKEKGLFYTPSHLAKLLVDECLPLKN--YEDFDIANYKILDPAC 369

Query: 215 GTGGFLTDAMNHVADCGS--HHKIPPILV--------PHGQELEPE-------THAVCVA 257
           G+G FL      +       H+   P +          +G + E +       + ++ + 
Sbjct: 370 GSGIFLVVVFKRLVQIWKLQHNMATPTITDLKKLLKNIYGVDKEQQAIYLTSFSLSLALC 429

Query: 258 G-----MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                  ++  L  D    +  N+      +      K+F   + NPPF +         
Sbjct: 430 NELNPITILNELRFD--NLIGSNLIHSDFFACKEIENKKFDLVIGNPPFVRG-------- 479

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            K  K  E+ +      KI  G +  L  L         GG    I+ SS  L+N  +  
Sbjct: 480 -KLDKKQEIWKINDKKIKIPQGQIA-LGFLTQSFNYLKEGGLLCLIIKSSGLLYNSTSN- 536

Query: 373 GESEIRRWLLENDLI 387
              + ++ L EN  I
Sbjct: 537 ---DFKKMLFENYNI 548


>gi|255316512|ref|ZP_05358095.1| restriction modification system DNA specificity subunit
           [Clostridium difficile QCD-76w55]
          Length = 282

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 84/278 (30%), Gaps = 57/278 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP  V++              + +      + +P+CG G F+   ++   +      
Sbjct: 50  QFFTPEVVINYML--------DSLEATGFKGGKILEPSCGNGKFVNALISKFENVE---- 97

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                     EL  E H +                  + N   G  L        +F   
Sbjct: 98  ------ITSVELNNELHYLNK------------ICYPNVNTINGDCLEYLKEFEGKFDLV 139

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPPFGK  ++D     K                               L+     GG 
Sbjct: 140 IGNPPFGKSCKRDGFEFGKSSLESYF-----------------FELSLRALK----EGGS 178

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWILSNR 413
             +VL  S L    +      +R++ ++N  I   ++LPT    F+ T++ T +  L  +
Sbjct: 179 LIMVLPDSIL----SSKKYFNLRKFTVDNFRIIQSISLPTTTFYFYGTSVKTSILHLKKK 234

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
               +   + +     +    +    +  +I+     +
Sbjct: 235 DCNNKDYSIFMGIVDKIGWDSKGNKNENELISAYHEFK 272


>gi|184155025|ref|YP_001843365.1| hypothetical protein LAF_0549 [Lactobacillus fermentum IFO 3956]
 gi|183226369|dbj|BAG26885.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 289

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDLS--QADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTDQ-----PIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      ++ L                   +DL    +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQLQDL---------PVQLYHQDAIRDL-DVPQVDLVVADLPVGYY-- 155

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                ++   K     R   G          ++ HL  +  +     G   + L    LF
Sbjct: 156 ----PLDDNTKRYR-TRAKEGHS--------YVHHLLIEQAMNYLMPGGFGVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G  E   W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETAGLVE---WIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|324016950|gb|EGB86169.1| N-6 DNA Methylase [Escherichia coli MS 117-3]
          Length = 715

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL---DPDDALFKESPGM 205
            V   ++  +++  +R        G   ++TP  V      + +   D DD +       
Sbjct: 299 DVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANG 357

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHA 253
                DPTCG+ GF + A++ +                   +        G +  P    
Sbjct: 358 DFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVM 417

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +    M ++          ++     ++L+ +      F    +NPPFG
Sbjct: 418 LARVNMALQG------APKAQIFYTDNSLTTNALKPNSFDLICTNPPFG 460



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 32/164 (19%)

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K    G + P +    D ++LF+      L+     GGR  IVL    L      SG+  
Sbjct: 558 KPDSKGNWQP-VGATIDPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRY 608

Query: 377 IRRWLLE------------NDLIEAIVALPTDLF--FRTNIATYLWILSNRKT------- 415
           +R +++               +++A+++LP+D F    T   T +  L  R         
Sbjct: 609 VREYIMGRKDEKTGEFVGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQ 668

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
              E +  V +  A  L   ++N  +       +   +I+  Y 
Sbjct: 669 FLPEPQTDVFMAVAETLGYVVKNNIEDYNAGVANDLDKIVSAYK 712


>gi|116513779|ref|YP_812685.1| adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093094|gb|ABJ58247.1| Adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 332

 Score = 57.5 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 97/321 (30%), Gaps = 43/321 (13%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLI 163
           S  D     F+  +  S   R+E      K           L            +Y  L+
Sbjct: 25  SLVDALVETFD--NLESGEIRVEMGAPDQKTVAELEERYAALDYKNWSKAQKEQVYGLLV 82

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++    A    TP     L   +L    D L    P   + L DP  G+G  L   
Sbjct: 83  LKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSV 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A               G + + E   +      +  L++D          Q +   
Sbjct: 136 DQQLAAQNH---SEDRFDLVGLDNDEEMLNLADVAAHLAGLKADF-------YCQDALTG 185

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +         +S+ P G        A +   KN +L        +  +G     +   
Sbjct: 186 WPVKP----DVVVSDLPIG------FYANDDNAKNFDL--------RTKEGHAYAHVLFV 227

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            ++       G A +++  + L     G+  ++   WL     ++AIV LP+ LF     
Sbjct: 228 EQIVKNLAEDGFAFLLVPQNML----TGTVGADFMPWLASKVYLQAIVQLPSSLFQSKIS 283

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + I  N    +   +V L
Sbjct: 284 QKSILIFQNHGQSKPPKEVLL 304


>gi|1709162|sp|P50190|MTM1_MICAM RecName: Full=Modification methylase MamI; Short=M.MamI; AltName:
           Full=Adenine-specific methyltransferase MamI
 gi|984668|emb|CAA55646.1| methyltransferase [Microbacterium ammoniaphilum]
          Length = 362

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 13/202 (6%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL +  +L       + I L   T     +   ++  +         G   ++TP  V  
Sbjct: 144 RLAEPTVLQSALALVNEI-LGGGTRVADPLGTAFDAFLSGRYDHSG-GLGTYLTPSSVAR 201

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   ++LD   +           + DP CGTG FL  A +   +   +  +  +L     
Sbjct: 202 MMAEVVLDLLSSDALADVRAP-IIADPFCGTGRFLVAAFDAAEERHENVDLAGLLDGGLV 260

Query: 246 ELEPETHAVCVA--GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPF 301
             +  T A+  +   +L+            +      +++       R      L+NPPF
Sbjct: 261 GADQSTTAIAKSGLNLLLYG------AQQPEVYAVADSMTDPGLDRLRGTLAAVLTNPPF 314

Query: 302 GKKWEKDKDAVEKEHKNGELGR 323
           G     D   +++  +     R
Sbjct: 315 GGGKYDDALGIDRTRELFPSVR 336


>gi|300905269|ref|ZP_07123041.1| N-6 DNA Methylase [Escherichia coli MS 84-1]
 gi|301305093|ref|ZP_07211193.1| N-6 DNA Methylase [Escherichia coli MS 124-1]
 gi|300402853|gb|EFJ86391.1| N-6 DNA Methylase [Escherichia coli MS 84-1]
 gi|300839598|gb|EFK67358.1| N-6 DNA Methylase [Escherichia coli MS 124-1]
 gi|315255852|gb|EFU35820.1| N-6 DNA Methylase [Escherichia coli MS 85-1]
          Length = 715

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL---DPDDALFKESPGM 205
            V   ++  +++  +R        G   ++TP  V      + +   D DD +       
Sbjct: 299 DVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANG 357

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHA 253
                DPTCG+ GF + A++ +                   +        G +  P    
Sbjct: 358 DFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVM 417

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +    M ++          ++     ++L+ +      F    +NPPFG
Sbjct: 418 LARVNMALQG------APKAQIFYTDNSLTTNALKPNSFDLICTNPPFG 460



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 32/167 (19%)

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K    G + P +    D ++LF+      L+     GGR  IVL    L      SG+  
Sbjct: 558 KPDSKGNWQP-VGATIDPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRY 608

Query: 377 IRRWLLENDL------------IEAIVALPTDLF--FRTNIATYLWILSNRKT------- 415
           +R +++                ++A+++LP+D F    T   T +  L  R         
Sbjct: 609 VREYIMGKKDEKTGEFVGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQ 668

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              E +  V +  A  L   ++N  +       +   +I+ +Y   E
Sbjct: 669 FLPEPQTDVFMAVAETLGYVVKNNIEDYNAGVANDLDKIVSVYKRGE 715


>gi|210630625|ref|ZP_03296528.1| hypothetical protein COLSTE_00413 [Collinsella stercoris DSM 13279]
 gi|210160400|gb|EEA91371.1| hypothetical protein COLSTE_00413 [Collinsella stercoris DSM 13279]
          Length = 532

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 34/272 (12%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             S+    F+TP+ V       ++   D         +  + DP CG G  +   +  +A
Sbjct: 26  NRSKAIGQFLTPKQVYDAMIGDIMQNFDL----RQDSVINVIDPFCGDGRLIAAFLTVLA 81

Query: 229 DCGSHHKIPPILVPHGQE--LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              +H K   +      E  +   T  +C A        +D   ++  N Q       D 
Sbjct: 82  TANNHPKEVVVTAWDIDEAIINAATETICEAA-------TDAPFEVVVNTQVMDAFDCDQ 134

Query: 287 FTGKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKI------------S 332
                F  C++NPP+   K  + +  A + E++  +      G                 
Sbjct: 135 ALYGSFDICVTNPPWSSTKSLKANAFATKDEYEAYQTLTNAYGRLLTERYPEVKGGKSFG 194

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G++                 G   IV+ SS   +  +    + +RR +L++  + ++  
Sbjct: 195 AGALNLSRFGLALALRLVKESGICGIVMPSSLAADTSS----AVLRRSMLDHFSLRSLHY 250

Query: 393 LPT--DLFFRTNIATYLWILSNRKTEERRGKV 422
            P    LF   + A    +L   +  ++ G+V
Sbjct: 251 YPAELKLFAGADQAAIYLVLDANRN-DKPGRV 281


>gi|307312925|ref|ZP_07592553.1| N-6 DNA methylase [Escherichia coli W]
 gi|306907093|gb|EFN37600.1| N-6 DNA methylase [Escherichia coli W]
 gi|315063606|gb|ADT77933.1| putative type I restriction-modification system methyltransferase
           subunit [Escherichia coli W]
 gi|320200586|gb|EFW75172.1| N-6 DNA methylase [Escherichia coli EC4100B]
 gi|323380313|gb|ADX52581.1| N-6 DNA methylase [Escherichia coli KO11]
          Length = 715

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL---DPDDALFKESPGM 205
            V   ++  +++  +R        G   ++TP  V      + +   D DD +       
Sbjct: 299 DVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANG 357

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHA 253
                DPTCG+ GF + A++ +                   +        G +  P    
Sbjct: 358 DFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVM 417

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +    M ++          ++     ++L+ +      F    +NPPFG
Sbjct: 418 LARVNMALQG------APKAQIFYTDNSLTTNALKPNSFDLICTNPPFG 460



 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 32/167 (19%)

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K    G + P +    D ++LF+      L+     GGR  IVL    L      SG+  
Sbjct: 558 KPDSKGNWQP-VGATIDPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRY 608

Query: 377 IRRWLLENDL------------IEAIVALPTDLF--FRTNIATYLWILSNRKT------- 415
           +R +++                ++A+++LP+D F    T   T +  L  R         
Sbjct: 609 VREYIMGKKDEKTGEFVGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQ 668

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              E +  V +  A  L   ++N  +       +   +I+  Y   E
Sbjct: 669 FLPEPQTDVFMAVAETLGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 715


>gi|261418201|ref|YP_003251883.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|319767839|ref|YP_004133340.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
 gi|261374658|gb|ACX77401.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|317112705|gb|ADU95197.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
          Length = 329

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 91/273 (33%), Gaps = 49/273 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRD------VVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           E + + F   V +G    + P        V      L+ +           +   + DP 
Sbjct: 71  EEIRKAFQLAVLKGMRKHVQPHHQMTPDAVSLFLAYLVREF------TRSHLALKILDPA 124

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GT   LT  +N +               +G +++     +           ++ ++   
Sbjct: 125 VGTANLLTAVLNGLR--------GKQAASYGSDVDDLLVKLAYVN-------ANLQKHPV 169

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +   Q S   + LF  +     + + P G  +  D D   +     + GR          
Sbjct: 170 QLFNQDSL--RPLFV-EPVDVVVCDLPVG--YYPDDDNAARFALKAKEGR---------- 214

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            S    + +   L      GG    ++ ++   + +AG    ++  +L E  +++ ++ L
Sbjct: 215 -SYAHHLFIEQSLRYTKE-GGYLFFLIPNTLFSSPQAG----QLNEFLKEAAIVQGVLQL 268

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGK-VQLI 425
           P  +F     A  + IL  +    ++ K V L+
Sbjct: 269 PLSMFKNDQAAKSVLILQKKGPNVKKPKHVLLV 301


>gi|163867444|ref|YP_001608643.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017090|emb|CAK00648.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1654

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 60/440 (13%), Positives = 124/440 (28%), Gaps = 52/440 (11%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++ G        +     G+   +NN      + S   +
Sbjct: 770  DAFHKELKNNLNSEIKQEEALEMLGQHLVTRPVFEALFDGNEFVQNN------AISQAME 823

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             I  + D ++     ++    Y   K  +     P    + ++  +YE    +   + ++
Sbjct: 824  KILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFTKAFKKTTD 882

Query: 173  GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + D   +   K       ++ DP  GTG F+T  +       
Sbjct: 883  RLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSNLIKP 942

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM------LIR---------RLESDPRRDLSKNI 276
               +       H  E+    + +    +      L++          L    R    KN+
Sbjct: 943  EDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTFRMLEEKNL 1002

Query: 277  QQ----GSTLSKDLFTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             Q     ++   +            NPP  FG+K   D +            R       
Sbjct: 1003 LQELFKENSEYLEHQKKLDIKVIFGNPPYSFGQKSANDNNPNTSYFILDNRIRKKYISNS 1062

Query: 331  IS----DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                  +      +             G    V ++  +    +G     +R+ L+E   
Sbjct: 1063 TKIINRNKLYDSYIRAICWASDRIKERGVIGFVTNAGFI----SGHAMDGLRKCLVEEFS 1118

Query: 387  IEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
               I  L  +              +F   +     + IL      ++ GK+   +  D  
Sbjct: 1119 SLYIFHLRGNQRTSGELSRKEGGKIFGEGSRAPIAISILVKNPNAQQHGKIYFRDIGDYL 1178

Query: 432  TSIRNEGKKRRIINDDQRRQ 451
                      +  + D   +
Sbjct: 1179 NREEKLTIIEKFRSIDGITR 1198


>gi|319644564|ref|ZP_07998917.1| N-6 DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317384052|gb|EFV65038.1| N-6 DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 678

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 82/257 (31%), Gaps = 55/257 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV      LL P+               DP+ GTG      +  V +       
Sbjct: 22  FYTPEPVVTAMQEALLIPEIRP--------ERFLDPSAGTG-MFISTLKDVPE------- 65

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 H  E +  T  +  +               SK   +G    +  + G  F    
Sbjct: 66  -----IHCFEKDRLTGRILSS-----------LYPESKVNIEGFQSIQPYYNGY-FDVVS 108

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELPPNGGGR 355
           SN PFG     D+D             F      +   S+  +  +   K       GG 
Sbjct: 109 SNIPFGNTRIYDRD-------------FDRSDDPVRKSSLAAVHNYFFFKGMDTLREGGI 155

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN- 412
            A + +S  + + +       +R WL+ +  + + + LP +LF    T + + L +L   
Sbjct: 156 LAYITTSGVMDSPQNRP----VRDWLVNHANLVSTIRLPDNLFTDAGTEVGSDLIVLQKN 211

Query: 413 -RKTEERRGKVQLINAT 428
            RK+E    +   I   
Sbjct: 212 TRKSELTEKERNFIETR 228


>gi|15612337|ref|NP_223990.1| hypothetical protein jhp1272 [Helicobacter pylori J99]
 gi|4155873|gb|AAD06844.1| putative [Helicobacter pylori J99]
          Length = 1164

 Score = 57.5 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 82/244 (33%), Gaps = 26/244 (10%)

Query: 42  RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRN 98
           R L+ AL   +    V   +  F     +  SF   +       T    L+ L     + 
Sbjct: 173 RYLKDALIAYQKDDQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKI 232

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHP---DTVPD-R 153
           +L +  +S   N   I E  DF   +  +++   LL +I    + +++ P   D   D  
Sbjct: 233 DLNNVRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILILINHVDMGPIIKDLNDDKD 292

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GM 205
              + YE  +  +  ++ E    + TP  VV      L       FK++P          
Sbjct: 293 PYLHFYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDNK 352

Query: 206 IRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPIL-VPHGQELEPETHAVC 255
              L D   GTG FL +A     +              K   +L   +G E     +A+ 
Sbjct: 353 NIKLLDFATGTGTFLLEAFRKALEVRKTSDGGASTKEDKYQNLLKQFYGFEYLIAPYAIA 412

Query: 256 VAGM 259
              +
Sbjct: 413 HLNL 416


>gi|308064129|gb|ADO06016.1| adenine specific DNA methyltransferase [Helicobacter pylori Sat464]
          Length = 1203

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NQNIKLLDFATGTGTFLLEAFRKALEMMKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|331017717|gb|EGH97773.1| Type I restriction enzyme (modification subunit) [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 571

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 22/188 (11%)

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +++       RF       + G +  + H+  +        GR  +++  S LF   A  
Sbjct: 219 KEDLDRDSYQRFD---HASAKGPLAAVFHILAQ------TEGRVILLVPDSLLFKPGA-- 267

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  +R +LL    +EA+V+LPT        A  + IL+     E   +V  +       
Sbjct: 268 -ERSLREYLLTRQRVEAVVSLPTGAAQGLKGACSILILNTVLASE---QVLFV------- 316

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            + NE          + RQ+  +   R  G+FS ++           +     ++  +  
Sbjct: 317 KVTNELLTNADTRTLKFRQVGALIRDRGEGRFSSLVKVNDLLTDDFNMEAARHVTGRVTI 376

Query: 493 TGLARLEA 500
               + E 
Sbjct: 377 HRQVQTEF 384


>gi|218550410|ref|YP_002384201.1| type I restriction-modification system methyltransferase subunit
           [Escherichia fergusonii ATCC 35469]
 gi|218357951|emb|CAQ90595.1| putative type I restriction-modification system methyltransferase
           subunit [Escherichia fergusonii ATCC 35469]
          Length = 715

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 22/169 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL---DPDDALFKESPGM 205
            V   ++  +++  +R        G   ++TP  V      + +   D DD +       
Sbjct: 299 DVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANG 357

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHA 253
                DPTCG+ GF + A++ +                   +        G +  P    
Sbjct: 358 DFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVM 417

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +    M ++          ++     ++L+ +      F    +NPPFG
Sbjct: 418 LARVNMALQG------APKAQIFYTDNSLTTNALKPNSFDLICTNPPFG 460



 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 32/167 (19%)

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K    G + P +    D ++LF+      L+     GGR  IVL    L      SG+  
Sbjct: 558 KPDSKGNWQP-VGATIDPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRY 608

Query: 377 IRRWLLENDL------------IEAIVALPTDLF--FRTNIATYLWILSNRKTEER---- 418
           +R +++                ++A+++LP+D F    T   T +  L  R    +    
Sbjct: 609 VREYIMGKKDEKTGEFVGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPKQPEQ 668

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                +  V +  A  L   ++N  +       +   +I+  Y   E
Sbjct: 669 FLPEPQTDVFMAVAETLGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 715


>gi|227529725|ref|ZP_03959774.1| DNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227350391|gb|EEJ40682.1| DNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 311

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 101/327 (30%), Gaps = 47/327 (14%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNI 158
            SY+ +  +NA+ I +D        R+E      +  +    I  +L    V    +  +
Sbjct: 9   CSYLDAMLENAENIIDD-----NTVRVEDGVPDKETQEKLEKIYQQLDLKNVKAEAIRQL 63

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            +    +   + +  A   MTP  +  L   L+              + T++DP  GT  
Sbjct: 64  IQLSFLKVIRKDAIQANHQMTPDTIGLLMAFLI------EKVTQNTKLETIFDPAVGTAN 117

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT  +N +            +   G + +    +V    + ++    D     +     
Sbjct: 118 LLTTVINQL-----DKDEHDNIKGFGIDNDDSMLSVASVNVALQYANVDLFHQDAVG--- 169

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                       +    +S+ P G     D              R   G          +
Sbjct: 170 -------ALDIPQCDLAVSDLPIGYYPLDDNT-------KDYQTRAKKGHS--------Y 207

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + HL  +  +     G   + L  S LF  +   G     +W+     ++  V LP++LF
Sbjct: 208 IHHLLIEQSMNYLKPGSFGVFLVPSSLFQTKETEGFV---KWIHSVAYLQGFVNLPSELF 264

Query: 399 FRTNIATYLWILSNRKTE-ERRGKVQL 424
                   + +L       ++  KV L
Sbjct: 265 ANPAAQKSILLLQRHGGNGKQAAKVLL 291


>gi|256810317|ref|YP_003127686.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793517|gb|ACV24186.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 1012

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 67/239 (28%), Gaps = 13/239 (5%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFS 108
               A+ E +     S++  E F      +  Y       +  G           I    
Sbjct: 182 EEIKALYEAFKEHLISDMKKEEFADAYAQTIVYGLFMARFNIEGDLTKEKVAFKGIPKSL 241

Query: 109 DNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRR 165
                IF+    D    +  +    +      +   IE     +  +    + YE  +  
Sbjct: 242 GVIHKIFKHIASDLPDYLDWIVDEIITILNNIDIKKIEESFKISGKEDAFLHFYEDFLAS 301

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +  E+ +    + TP  VV      + +   D   K        + DP  GTG FL   +
Sbjct: 302 YNPELRKSKGVYYTPLPVVEFIVNSVDEILRDRFGKRLHDENVRILDPATGTGTFLAVVL 361

Query: 225 NHVADCGSHHKIPPILV------PHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKN 275
             V     H      L        +G E+    + V      ML+       R +   N
Sbjct: 362 KRVHKNVKHTLFQAYLKERLLKNIYGFEILISPYLVAHLKLSMLLHNWHITLRGEERFN 420


>gi|305663147|ref|YP_003859435.1| N-6 DNA methylase [Ignisphaera aggregans DSM 17230]
 gi|304377716|gb|ADM27555.1| N-6 DNA methylase [Ignisphaera aggregans DSM 17230]
          Length = 701

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 92/313 (29%), Gaps = 39/313 (12%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S  I        +++     +    + D V +  +   +E LI    +        F TP
Sbjct: 99  SDEILEDSIRDEIFRRVTTIAKRYSYADAV-NDELGKAFEELIP---NAERRKLGQFFTP 154

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  L    +    +            + DP  GTG F+   M           I    
Sbjct: 155 IPIADLMVEYIRRNVERG---------RIVDPAVGTGRFILRLML-------KSGISKDY 198

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G ++ P    +    +      SD +R                   K     + NPP
Sbjct: 199 RITGIDVSPLMILLTATNI---SYVSDLKRLELIVGDMFDLDD----AIKESDAIICNPP 251

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           + +  E     +E ++K     +              F  +    L      GG  + + 
Sbjct: 252 YSRHHE-----LEPDYKRKLQEKVKAASDVTLSRYSSFFAYALLYLSSLLKKGGYVSYIC 306

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIATYLWILSNRKTEE- 417
                    +      ++R++ E++L+E ++    D  +F     A  +  L      + 
Sbjct: 307 PLEIFEANYSDV----VKRYVAEHNLLERVIVFDEDSFIFPYAENAATVIFLHKDSPTKV 362

Query: 418 RRGKVQLINATDL 430
              +V+ I A+ L
Sbjct: 363 YFVRVKTIEASSL 375


>gi|329940588|ref|ZP_08289869.1| Adenine specific DNA methyltransferase [Streptomyces
           griseoaurantiacus M045]
 gi|329300649|gb|EGG44546.1| Adenine specific DNA methyltransferase [Streptomyces
           griseoaurantiacus M045]
          Length = 1125

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 98/346 (28%), Gaps = 72/346 (20%)

Query: 137 CKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
               S ++  +  D   D  + ++YE  +  +  E+      + T  +VV        + 
Sbjct: 303 IDVLSAVDPEMFKDETGDAYL-HLYEGFLGAYDPELRRRTGTYYTAGEVVRFMVGFTDEV 361

Query: 195 DDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------P 242
                 +  G      T+ DP  GTG FL + ++HVA   S      +            
Sbjct: 362 LRDRLGQEDGYGSEDVTVVDPAMGTGTFLINIIDHVAKSLSLKYGSTLKSGLLRELSGRL 421

Query: 243 HGQELEPETHAVCVAGMLIRR----------------LESDPRRDLSKNIQQGSTLS--- 283
            G E +   +AV    + +                  L +D   D +     G       
Sbjct: 422 VGLEKQTGPYAVA--ELRVHHAFRSHDADITRRPPRLLVADTLDDPAVEHHLGFMYEAIA 479

Query: 284 ------KDLFTGKRFHYCLSNPPFGK--------KWEKDKD-----AVEKEHKNGELGRF 324
                   +   ++    + NPP+ +        +W  + +      +       + GR 
Sbjct: 480 RHRRMANKIKADEKVMVVIGNPPYLRGARQSGVGRWITEGNPNGQGPILARFHPEDNGRV 539

Query: 325 GPGLPKISDGSMLF----LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           G  L  +      +    +         P    G  A++ +S  L +  +      +R  
Sbjct: 540 GYALDNLYVYFWAWSTWKVFDQLTASGAPKAPSGIVALITNSGYLDSEGSAGMRHYLREA 599

Query: 381 LLENDLIEAIVAL-PTD--------LFFRTNIATYLWILSNRKTEE 417
             +      ++ L P          +F        + +       +
Sbjct: 600 -ADEGW---VIGLSPEGAYSDTRTRVFQDVKREICIAVFVRHGAPD 641


>gi|332827221|gb|EGJ99995.1| hypothetical protein HMPREF9455_03689 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1937

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 59/280 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ V+    AL L  +++  K          +P+ GTG F++     V D       
Sbjct: 105 FYTPKPVID---ALTLALNNSGIKPQ-----RFLEPSAGTGAFISSFKETVPDAE----- 151

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E +  T      G ++  L  + +  +    +       +    + +    
Sbjct: 152 -----VTGFEKDLLT------GKILSHLHPEDKIRIEGYEKM------EGRYSQHYDVIA 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E            +P +S  +     +   K  +    GG  
Sbjct: 195 SNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFFTKSVMAAREGGLI 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IR  L+ +  + + + LP +LF     T + + L IL  +
Sbjct: 243 AFITSQGVLNSEQN----KPIREHLMNSCNVVSAIRLPNNLFTEEAGTEVGSDLIILQRK 298

Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
                  +R+     I +  L     N      +  D  R
Sbjct: 299 NDNILPTQRQQD--FIESRKL----SNGISVNNLFKDFDR 332


>gi|294792084|ref|ZP_06757232.1| type I restriction-modification system, M subunit [Veillonella
          sp. 6_1_27]
 gi|294457314|gb|EFG25676.1| type I restriction-modification system, M subunit [Veillonella
          sp. 6_1_27]
          Length = 162

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-- 66
          A L   ++  A+ L G      +   +L     + L   L    S V + Y +    +  
Sbjct: 3  AELNQKLFSAADSLCGKMSADQYKDYLLGLIFYKYLSDKLLE--STVVKAYKSLDDIDTH 60

Query: 67 --IDLESFVKVAGYSF 80
                + +K+    F
Sbjct: 61 VIDKDSNLLKIKREYF 76


>gi|261820019|ref|YP_003258125.1| hypothetical protein Pecwa_0697 [Pectobacterium wasabiae WPP163]
 gi|261604032|gb|ACX86518.1| domain of unknown function DUF1738 [Pectobacterium wasabiae WPP163]
          Length = 653

 Score = 57.1 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 62/196 (31%), Gaps = 18/196 (9%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +  F ++A Y    T  +S     S    +N   ++    D+     + +  +       
Sbjct: 431 IRQFQEIAPYENRWTV-FSDFIHMSAAALHNRCHFVQEIEDDYMRRIKRYKTADQ----- 484

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
                 +    F+ +    +      + +++  L         +    + TP  + ++  
Sbjct: 485 -----RRFPVLFNTLVDGMEFSAADFLGSVFMEL-----ELGDQRRGQYFTPYSIAYMMA 534

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            + L               T+ DP CG GG +      + + G + +   + V    +++
Sbjct: 535 KMQLSDGLPALTSGERDFITISDPACGAGGLVVAMAQAMLEAGFNPQKQMVAVC--VDID 592

Query: 249 PETHAVCVAGMLIRRL 264
           P    +    + +  +
Sbjct: 593 PVAAMMAYVQLALCGI 608


>gi|332885095|gb|EGK05347.1| hypothetical protein HMPREF9456_02846 [Dysgonomonas mossii DSM
           22836]
          Length = 1937

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 59/280 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ V+    AL L  +++  K          +P+ GTG F++     V D       
Sbjct: 105 FYTPKPVID---ALTLALNNSGIKPQ-----RFLEPSAGTGAFISSFKETVPDAE----- 151

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E +  T      G ++  L  + +  +    +       +    + +    
Sbjct: 152 -----VTGFEKDLLT------GKILSHLHPEDKIRIEGYEKM------EGRYSQHYDVIA 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E            +P +S  +     +   K  +    GG  
Sbjct: 195 SNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFFTKSVMAAREGGLI 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IR  L+ +  + + + LP +LF     T + + L IL  +
Sbjct: 243 AFITSQGVLNSEQN----KPIREHLMNSCNVVSAIRLPNNLFTEEAGTEVGSDLIILQRK 298

Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
                  +R+     I +  L     N      +  D  R
Sbjct: 299 NDNILPTQRQQD--FIESRKL----SNGISVNNLFKDFDR 332


>gi|325684438|gb|EGD26603.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 332

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 97/320 (30%), Gaps = 43/320 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIR 164
            +D     F+  +  S   R+E      K           L            +Y  L+ 
Sbjct: 26  LADALVETFD--NLESGEIRVEMGAPDQKTVAELEERYAALDYKNWSKAQKEQVYGLLVL 83

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +  ++    A    TP     L   +L    D L    P   + L DP  G+G  L    
Sbjct: 84  KAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSVD 136

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +A               G + + E   +      +  L++D          Q +    
Sbjct: 137 QQLAAQNH---SEDRFDLVGLDNDEEMLNLADVAAHLAGLKADF-------YCQDALTGW 186

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +         +S+ P G        A +   KN +L        +  +G     +    
Sbjct: 187 PVKP----DVVVSDLPIG------FYANDDNAKNFDL--------RTKEGHAYAHVLFVE 228

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           ++       G A +++  + L     G+  ++   WL     ++AIV LP+ LF      
Sbjct: 229 QIVKNLAEDGFAFLLVPQNML----TGTVGADFMPWLASKVYLQAIVQLPSSLFQSKISQ 284

Query: 405 TYLWILSNRKTEERRGKVQL 424
             + I  N    +   +V L
Sbjct: 285 KSILIFQNHGQSKPPKEVLL 304


>gi|51209446|ref|YP_063409.1| cpp14 [Campylobacter coli]
 gi|39979654|gb|AAR29498.1| cpp14 [Campylobacter coli]
          Length = 1932

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 133/421 (31%), Gaps = 82/421 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLN--------------DPTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 502

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  D++      ++ +       G   IK  +       LD     ++  +   + 
Sbjct: 503 -------DVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKT 555

Query: 507 L 507
           L
Sbjct: 556 L 556


>gi|51209527|ref|YP_063459.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121999261|ref|YP_001004014.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|39979705|gb|AAR29548.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87248838|gb|EAQ71802.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 133/421 (31%), Gaps = 82/421 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLN--------------DPTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 502

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  D++      ++ +       G   IK  +       LD     ++  +   + 
Sbjct: 503 -------DVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKT 555

Query: 507 L 507
           L
Sbjct: 556 L 556


>gi|56421321|ref|YP_148639.1| hypothetical protein GK2786 [Geobacillus kaustophilus HTA426]
 gi|56381163|dbj|BAD77071.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 329

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 92/273 (33%), Gaps = 49/273 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRD------VVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           E + + F   V +G    + P        V      L+ +           +   + DP 
Sbjct: 71  EEIRKAFQLAVLKGMRKHVQPHHQMTPDAVSLFLAYLVREF------TRSHLALKILDPA 124

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GT   LT  +N +    ++         +G +++     +           ++ ++   
Sbjct: 125 VGTANLLTAVLNGLRGKQANS--------YGSDVDDLLVKLAYVN-------ANLQKHPV 169

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +   Q S   + LF  +     + + P G  +  D D   +     + GR          
Sbjct: 170 QLFNQDSL--RPLFV-EPVDVVVCDLPVG--YYPDDDNAARFSLKAKEGR---------- 214

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            S    + +   L      GG    ++ +    + +AG    ++  +L E  +++ ++ L
Sbjct: 215 -SYAHHLFIEQSLRYTKE-GGYLFFLIPNMLFSSPQAG----QLNEFLKEAAIVQGVLQL 268

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGK-VQLI 425
           P  +F     A  + IL  +    ++ K V L+
Sbjct: 269 PLSMFKNDQAAKSVLILQKKGPNVKKPKHVLLV 301


>gi|299783015|gb|ADJ41013.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 289

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDLS--QADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTDQ-----PIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      ++ L                   +DL    +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQLQDL---------PVQLYHQDAIRDL-DVPQVDLVVADLPVGYY-- 155

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                ++   K     R   G          ++ HL  +  +     G   + L    LF
Sbjct: 156 ----PLDDNTKRYR-TRAKEGHS--------YVHHLLIEQAMNYLLPGGFGVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G  E   W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETAGLVE---WIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|116629899|ref|YP_815071.1| adenine-specific DNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853656|ref|ZP_04644024.1| adenine-specific DNA methylase [Lactobacillus gasseri 202-4]
 gi|282851515|ref|ZP_06260880.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
 gi|311110466|ref|ZP_07711863.1| putative modification methylase [Lactobacillus gasseri MV-22]
 gi|116095481|gb|ABJ60633.1| Adenine-specific DNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238833694|gb|EEQ25963.1| adenine-specific DNA methylase [Lactobacillus gasseri 202-4]
 gi|282557483|gb|EFB63080.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
 gi|311065620|gb|EFQ45960.1| putative modification methylase [Lactobacillus gasseri MV-22]
          Length = 333

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 104/333 (31%), Gaps = 42/333 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
                +  ++   SFS      F+  +  +   ++E      +     +    +L  D +
Sbjct: 12  QKAIEHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDYDNL 69

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           P  +   I+  L  +  ++ +       TP  V+    AL+     +  K+      T+ 
Sbjct: 70  PRALKVQIFTLLTLKAVTQDASDYNLMPTP-SVIATIIALIWQRIVSKGKK------TVV 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  GTG  L   +  +           ++    +E              +  L      
Sbjct: 123 DPAIGTGNLLYSVIRQLIQENHSQNNYKLIGIDNEE-------------ALLDLADIGAH 169

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I      + D +  ++    +S+ P G     +     + H              
Sbjct: 170 LEDLKIDLYCQDALDPWMIEKADIVVSDVPVGYYPLDNNAERFENH----------AKEG 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S    LF+  + N L+      G A +V+          G G +E   WL +   I+AI
Sbjct: 220 HSFAHTLFIEQIVNNLKR----DGFAFLVVPRLLF----TGKGSTEFMTWLAKKVNIQAI 271

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           V LP D+F        + +  N      + +V 
Sbjct: 272 VDLPDDMFSSQIQQKSILVFQNHGEHAVKREVL 304


>gi|260663422|ref|ZP_05864313.1| adenine-specific DNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552274|gb|EEX25326.1| adenine-specific DNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 289

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDLS--QADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTDQ-----PIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      ++ L                   +DL    +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQLQDL---------PVQLYHQDAIRDL-DVPQVDRVVADLPVGYY-- 155

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                ++   K     R   G          ++ HL  +  +     G   + L    LF
Sbjct: 156 ----PLDDNTKRYR-TRAKEGHS--------YVHHLLIEQAMNYLLPGGFGVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G  E   W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETAGLVE---WIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|315123583|ref|YP_004065588.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018838|gb|ADT66930.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 1935

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 133/421 (31%), Gaps = 82/421 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 201 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 260

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   + G  + +++P+
Sbjct: 261 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 316

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 317 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 352

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +                 L K S 
Sbjct: 353 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDT--------------TLNKTSV 398

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 399 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNYIAEQATFLGAVRL 448

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 449 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 501

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  D++      ++ +       G   IK  +       LD     ++  +   + 
Sbjct: 502 -------DVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKT 554

Query: 507 L 507
           L
Sbjct: 555 L 555


>gi|169830944|ref|YP_001716926.1| hypothetical protein Daud_0772 [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637788|gb|ACA59294.1| hypothetical protein Daud_0772 [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 44

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRR 43
          M  F    A    FIW  A+ L G ++   +  V+LP T+LRR
Sbjct: 1  MNNFGEKVA----FIWSVADLLRGPYRPNQYKDVLLPMTVLRR 39


>gi|297561667|ref|YP_003680641.1| DNA methyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846115|gb|ADH68135.1| putative DNA methyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1121

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 93/356 (26%), Gaps = 71/356 (19%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S  +  +     L ++ +    + L          +++YE  + R+   + + +  + TP
Sbjct: 300 SRDVRTITVLPTLVRVLEAVDWLRLTRGRPRAH--ADLYETFLTRYDPALRKSSGSYYTP 357

Query: 181 RDVVHLATAL---LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234
             V    T     +L     L         T  DP  G+G FL+ AM+            
Sbjct: 358 APVADFLTEFTDSVLRKRMDLPLGFADRSVTTVDPAMGSGTFLSSAMDRARRNLEEEFGP 417

Query: 235 -------KIPPILVPHGQELEPETHAVCVAGMLIR-------RLESDPRRDLSKNIQQGS 280
                  K        G E    T A  V+ + +          E               
Sbjct: 418 VHTRTCLKDLYRDRLAGFER--STAAFAVSELRLHQQLSEQYGAEVPEEHRRFLCNTLDD 475

Query: 281 TLSKDLFTGKRFH-------------------YCLSNPPF--------GKKW-----EKD 308
                   G+R+                      + NPP+           W        
Sbjct: 476 PNHHYQSFGRRYDDLVHFRDQANQVKNSTPVMVVIGNPPYIESAKQRDPAPWLERRRSPA 535

Query: 309 KDAVEKEHKNGELGRFGPG--LPKISDGSMLFL-MHLANKLELPPNGGGRAAIVLSSSPL 365
            D V       E    G G    K+S  S+ F         +  P         +S+S  
Sbjct: 536 GDPVTSRPSMDEFRELGQGGLDYKLSAVSLYFWRWATWKAFDAHPEQPSGVVAFVSTSAY 595

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVAL-------PTD--LFFRTNIATYLWILSN 412
             G A +G     R   +      IV L       P +  +F        + I + 
Sbjct: 596 LTGDAFAGMRRYLRSTADEGW---IVDLSPEGHRPPANTRVFGGVQQPVCIGIFAR 648


>gi|255284442|ref|ZP_05348997.1| type I restriction-modification system, M subunit [Bryantella
           formatexigens DSM 14469]
 gi|255265027|gb|EET58232.1| type I restriction-modification system, M subunit [Bryantella
           formatexigens DSM 14469]
          Length = 114

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           T+       L   IW  A++L G     DF   +L         C   P +
Sbjct: 63  TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMF----SCEYRPYK 109


>gi|108563726|ref|YP_628042.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107837499|gb|ABF85368.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 1201

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL     +   S++   +  +    +  E F      +   T    L+ L     
Sbjct: 174 RYLKDALIAYQQDDQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 231

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +E+   LL +I  + + +++     D   D
Sbjct: 232 KINLDNVRSSIPKNFAVIREMADFLKKLDEIEEIQWLLNEILSSINHVDMDSILKDLNDD 291

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 292 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 351

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL  A     +              K   +L   +G E     +A
Sbjct: 352 NENIKLLDFATGTGTFLLKAFRKALEMRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 411

Query: 254 VCVAGM 259
           +    +
Sbjct: 412 IAHLNL 417


>gi|332308696|ref|YP_004436546.1| N-6 DNA methylase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176025|gb|AEE25278.1| N-6 DNA methylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 4626

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 79/284 (27%), Gaps = 58/284 (20%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             +    +     F TP  VV               +        +YDP+ G G F     
Sbjct: 3089 EYSEIKASALTAFYTPVPVVQ--------GVWKSLEHMGFEGGRVYDPSMGLGNFF---G 3137

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   ++ K+       G EL+  T  +                  S  I + +   K
Sbjct: 3138 LMPERLAANSKLA------GGELDTITAGIAK-------------FLQSDVIVKNTGFEK 3178

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             L     F    SN PF                    G F    P  +  ++    +   
Sbjct: 3179 SLLPADYFDVMTSNIPF--------------------GNFKIHDPAYNKHNLNIHNYFIA 3218

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A + ++  + +        + R    ++  + + + LP D+F     T
Sbjct: 3219 KSLDTIKPGGVVAYITTTYTMDSQS-----KKARELFYKSSDLVSAIRLPNDVFKKHAGT 3273

Query: 402  NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            N+   L I   R   E  G    I+A     S+  +        
Sbjct: 3274 NVNADLLIFRKRHDHEPAGDESWIDAFHYNKSMYPKLHYNNYFR 3317


>gi|68164395|ref|YP_247529.1| hypothetical protein pTet_01 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|60617801|gb|AAX31282.1| pTet01 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 131/421 (31%), Gaps = 82/421 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K                L    P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQK--------------KILEFKYPTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 502

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  D++      ++ +    +       K  +       LD     ++  +   + 
Sbjct: 503 -------DVFNDFRINEYFKNNPTKYLRKNEYKSSQYGYSLECLDDGRDLKIALENFTKT 555

Query: 507 L 507
           L
Sbjct: 556 L 556


>gi|308062637|gb|ADO04525.1| adenine specific DNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 1197

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRENKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|312863499|ref|ZP_07723737.1| N-6 DNA Methylase [Streptococcus vestibularis F0396]
 gi|311101035|gb|EFQ59240.1| N-6 DNA Methylase [Streptococcus vestibularis F0396]
          Length = 1331

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/435 (16%), Positives = 119/435 (27%), Gaps = 94/435 (21%)

Query: 20  EDLWGDFKHTDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF----- 72
            +L       DF  VI   P   LR LE   +       E+       + +L+ F     
Sbjct: 482 NNLIRIELQNDFTDVIEQNPVLFLRTLEDITQALHVPSVEEKEEVEEPSQELDLFSFMDM 541

Query: 73  ----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
                 V+  +   TS    +      + + LE  +            DF F   +    
Sbjct: 542 EESQEAVSQVTTSLTSNKREAKQEEALSEDELEPEVTETPPAT-----DFHFPEDLTDFY 596

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTPR---- 181
                 K+  N + + L      +   +   E  L+ ++        E F    P+    
Sbjct: 597 PKTTRDKVETNVAAVRLVKSLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKE 656

Query: 182 --DVVHLATA------------------LLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             ++  L T                   LL+       +        + DP+ GTG F  
Sbjct: 657 REELKTLVTEKEYSDMKQSSLTAYYTDPLLIREMWNKLERDGFTGGRVLDPSMGTGNFFA 716

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               H+ +             +G EL+  T A+         L  +   ++         
Sbjct: 717 AMPKHLRENSE---------LYGIELDTITGAIAK------HLHPNSHIEVKG------- 754

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                F    F   LSN PF      D              R+        D   +   +
Sbjct: 755 FETIAFNDNSFDLVLSNVPFANIRIAD-------------SRY--------DKPYMIHDY 793

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398
              K     + GG+ A++ S+  +           I + + E       V LP   F   
Sbjct: 794 FVKKSLDLVHDGGQVAMISSTGTMDKRTEN-----ILQDIRETADFLGGVRLPDSAFNAI 848

Query: 399 FRTNIATYLWILSNR 413
             TN+ T +      
Sbjct: 849 AGTNVTTDMLFFQKH 863


>gi|126697506|gb|ABO26710.1| TspGWI restriction endonuclease [Thermus sp. GW]
          Length = 1097

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPT 213
             YE  +  +  E+ +    + TP  VV     L+ D       +  G+     T+ DP 
Sbjct: 296 YFYEDFLEAYDPELRKDMGVYYTPVPVVRAMVQLVDDLLRTKMGKPLGLAEEGVTVIDPA 355

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
            GTG FL   ++           P +   +  E+    +A+ V 
Sbjct: 356 VGTGTFLLAVLDQALTNAEGRFGPGMRSHYATEVAHRLYALEVM 399


>gi|317481285|ref|ZP_07940356.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36]
 gi|316902618|gb|EFV24501.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36]
          Length = 1905

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 81/265 (30%), Gaps = 53/265 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L                 + +P+ G G F+   +++  D       
Sbjct: 105 FYTPPEITDAIADVLHGHGIRP--------DRVLEPSAGVGAFVDAVLDYKPDAD----- 151

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                    E +  T  +      ++ L  D +  +     QG    +  FT   F   +
Sbjct: 152 -----IMAFEKDLMTGRI------LKHLHPDQKVRV-----QGFEKIEKPFTDY-FDLVI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E               I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTGSHDPARRSAAKTIHNYFFL-------KSLDTVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++++     +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPSNAP----IREYMMKHANPVGVARLPNNLFTDNAGTEVGSDLIILQKN 298

Query: 414 KTEERRGKVQLINATDLWTSIRNEG 438
             ++R     L +  +++       
Sbjct: 299 SGKKRE----LYDYEEMFIQTGKTP 319


>gi|332975178|gb|EGK12078.1| hypothetical protein HMPREF0476_0077 [Kingella kingae ATCC 23330]
          Length = 505

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 100/272 (36%), Gaps = 43/272 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M   +E  + +     S+     +TP  +V+    +L   D   +     + R + +P C
Sbjct: 1   MQAAFESKMNK-----SKQLGQVITPAWIVN---EIL---DACHYAGCSILRRYVLEPAC 49

Query: 215 GTGGFLTDAMNHV-----ADCGSHHKIPPILVPH--GQELEPETHAVC--VAGMLIRRLE 265
           G G FL++ ++       A+  S+ +I   L  +  G EL+P  +A C      ++++  
Sbjct: 50  GNGAFLSEMVSRYIAAAKAEQQSNEQIAAELAQYIVGVELDPVAYADCITRLNHIVQQEL 109

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             P      + Q      +D      F + + NPP+ +    D+       +  +  RF 
Sbjct: 110 GLPNIAWRIHNQNTLDFYRDYVG--YFDWVVGNPPYIRLHRLDEA---MRARLKQQFRFT 164

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G    +D  + F       L    N  G+   +  +S L N          R++L +  
Sbjct: 165 HG---TTDMYLAFFEMAFAML----NPKGKLGFITPNSFLHNTS----YQAFRQFLQQQG 213

Query: 386 LIEAIVAL----PTDLFFRTNIATYLWILSNR 413
            +   +AL       LF   +  T + I   +
Sbjct: 214 YL---IALYDFKSNKLFEGFSTYTAISIFDKQ 242


>gi|116333801|ref|YP_795328.1| adenine-specific DNA methylase [Lactobacillus brevis ATCC 367]
 gi|116099148|gb|ABJ64297.1| Adenine-specific DNA methylase [Lactobacillus brevis ATCC 367]
          Length = 340

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 39/240 (16%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A   +TP  + ++   L+         E      T+ D T GTG  LT  +  + D   
Sbjct: 95  QANHQLTPDTIAYIMGYLV------ARLEKNKQHLTVLDLTVGTGNLLTAVLAQLKDV-- 146

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
              I   +  +G + +    A+      ++RL  +     +                   
Sbjct: 147 ---IAGEIAAYGVDNDDTMLAIAQTSSDLQRLPVELIHQDALEQLLVPAS---------- 193

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +++ P G     D  A  + H                     F+ HL  +  +    
Sbjct: 194 DLIVADLPIGYYPIDDNAANFQTHATEGHS---------------FVHHLLLEQAVNQLT 238

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G   + L  + LF   A  G   + +WL  N  ++ ++ LP++LF   N    +  L  
Sbjct: 239 PGGIGVFLVPTQLFQTEAAKG---LLKWLPNNVYLQGLLNLPSELFANANAQKAILFLQK 295


>gi|291541334|emb|CBL14445.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2753

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 106/373 (28%), Gaps = 82/373 (21%)

Query: 52   RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            RS + ++           +S V  A    Y  +E +L   G+    +N  + I    +  
Sbjct: 1137 RSLLEQEQPELPPEEKAEKSAVPSALRHNYRITEDTLGVGGAKEKFHNNMAAINLLHE-- 1194

Query: 112  KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEHLI-RRFG 167
                   +  + +A  E+   L K    + G+ +  D            +Y  L    + 
Sbjct: 1195 ------LELENRLATPEEQETLSKYV-GWGGLSMAFDENNAAWANEFQELYASLSPEEYR 1247

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            + +      F TP  V+      L                ++ +P+CGTG F        
Sbjct: 1248 AAMESTLTAFYTPPVVIKGMYEAL--------DRLGFSEGSILEPSCGTGNFF------- 1292

Query: 228  ADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQGSTL 282
               G           HG E++  T  +       A + ++  E                 
Sbjct: 1293 ---GLLPDSMAGSKLHGVEIDELTGRIAGQLYQKANIAVQGFE----------------- 1332

Query: 283  SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             +       F   + N PFG                     F     + +    L   + 
Sbjct: 1333 -ETKLPDDHFDVVIGNVPFGD--------------------FKVNDSRYNAQKFLIHDYF 1371

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399
              K       GG  A + S   +          E+R+++ +   +   + LP + F    
Sbjct: 1372 FAKALDKVRTGGVVAFITSKGTMDKASP-----EVRKYIAQRAELLGAIRLPDNTFRANA 1426

Query: 400  RTNIATYLWILSN 412
             T + + +  L  
Sbjct: 1427 GTEVTSDILFLQK 1439


>gi|290474589|ref|YP_003467469.1| hypothetical protein XBJ1_1563 [Xenorhabdus bovienii SS-2004]
 gi|289173902|emb|CBJ80689.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 228

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 22/206 (10%)

Query: 72  FVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
           F + A Y   Y       +   +     +  S             E +    TI + E+A
Sbjct: 15  FKQTARYHTRYQVFRDFCNCAMAAIHNKHCFS----------EELEQYYLK-TINKYERA 63

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +  +I + FS + L     P   + +++  L         +  + F TP  V  +   +
Sbjct: 64  DVD-RIVQLFSHVVLGLVQEPGDFLGSVFMQL-----ELGDKDLQQFFTPWSVARMMAQM 117

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            L     L +  P +  TL +P  G G     A + + + G  H     L  +  +++P 
Sbjct: 118 QLQDAAGLLQTQPFV--TLCEPCVGAGCITLAAADVLRELG--HDPLCSLWVYAIDIDPL 173

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNI 276
              +      +  + +      + + 
Sbjct: 174 AAVMAYIQFSLTGIPAAITIGNALHD 199


>gi|227326889|ref|ZP_03830913.1| putative type I restriction-modification system methyltransferase
           subunit [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 717

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 22/169 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL---DPDDALFKESPGM 205
            V   ++  +++  +R        G   ++TP  V      + +   D DD +       
Sbjct: 301 DVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANG 359

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHA 253
                DPTCG+ GF + A++ +                   +        G +  P    
Sbjct: 360 DFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRNYAFTGADAAPRMVM 419

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +    M ++          ++     ++L+        F    +NPPFG
Sbjct: 420 LARVNMALQG------APKAQIFYTDNSLTTKALQPNSFDLICTNPPFG 462



 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 32/167 (19%)

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K    G + P +    D ++LF+      L+     GGR  IVL    L      SG+  
Sbjct: 560 KPDSKGNWQP-VGATIDPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRY 610

Query: 377 IRRWLLENDL------------IEAIVALPTDLF--FRTNIATYLWILSNRKT------- 415
           +R +++                ++A+++LP+D F    T   T +  L  R         
Sbjct: 611 VREYIMGKKDEKTGEFVGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQ 670

Query: 416 --EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              E +  V +  A  L   ++N  +       +   +I+  Y   E
Sbjct: 671 FLPEPQTDVFMAVAETLGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 717


>gi|289449358|ref|YP_003474758.1| hypothetical protein HMPREF0868_0420 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289183905|gb|ADC90330.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 100

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 144 ELHPDTVPDRV---MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +++   V +       + YE+L+  + S   +   +F TP DV  L T +          
Sbjct: 3   DMNLGDVKNHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRI--------GT 54

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
                I  +YDP C     +    N   +  S   +P    
Sbjct: 55  VGKTEINKVYDPACWFRVIIVIEANSYVNTRSSRFLPKFKT 95


>gi|227514565|ref|ZP_03944614.1| DNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227087122|gb|EEI22434.1| DNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 289

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 101/299 (33%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDLS--QADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+   +     + P     + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI---EQVTKIDHPY---RILDPVVGTANLLTTVMNHLQSVTDQ-----PIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      ++ L                   +DL    +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQLQDL---------PVQLYHQDAIRDL-DVPQVDLVVADLPVGYY-- 155

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                ++   K     R   G          ++ HL  +  +     G   + L    LF
Sbjct: 156 ----PLDDNTKRYR-TRAKEGHS--------YVHHLLIEQAMNYLLPGGFGVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G  E   W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETTGLVE---WIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|317011755|gb|ADU85502.1| putative adenine specific DNA methyltransferase protein 1
           [Helicobacter pylori SouthAfrica7]
          Length = 812

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 83/244 (34%), Gaps = 26/244 (10%)

Query: 42  RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRN 98
           + L+ AL   +    V   +  F     +  SF   +       T    L+ L     + 
Sbjct: 174 KYLKDALVAYQKNEQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKI 233

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIE----LHPDTVPDR 153
           NL++  +S   N   I E  DF   +  +++   LL +I    + ++    L        
Sbjct: 234 NLDNVRSSIPKNFAVIREMADFLKNLDGIKEIQWLLDEILSLINHVDMDAILKDLNEDKD 293

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT----- 208
              + YE  +  +  ++ E    + TP  VV      L       FK++P  +++     
Sbjct: 294 PYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNE 353

Query: 209 ---LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHAVC 255
              L D   GTG FL +A     +              K   +L   +G E     +A+ 
Sbjct: 354 NIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAIA 413

Query: 256 VAGM 259
              +
Sbjct: 414 HLNL 417


>gi|307822216|ref|ZP_07652448.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum
           SV96]
 gi|307736782|gb|EFO07627.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum
           SV96]
          Length = 101

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T L+  P     K+      T+YDP C + G LTD+ + +            +  +G+E
Sbjct: 1   MTLLVFIP----IKDPLHNPLTIYDPACSSSGMLTDSKDEIKAKAG-------VYLYGKE 49

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           + PET+ +C + M I+  + +     S ++       +DL   + F   + +
Sbjct: 50  INPETYGICKSDMRIKGNDPENILFGSCSMLLRYLSCRDL--DRDFSVGIDH 99


>gi|12837533|gb|AAK08957.1|AF306668_2 restriction endonuclease BseMII [Geobacillus stearothermophilus]
          Length = 922

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 121/349 (34%), Gaps = 36/349 (10%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +L  ++V   ++  I +  I R      + A  F TP+ +  L  AL +           
Sbjct: 306 DLKLESVGQDLIQEILQSTIYR---THRKLAGQFTTPKKLADLLVALTIKNKRG------ 356

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE--PETHAVCVAG-ML 260
                +YDP CGTG     A +   + G  +K          +     +   + +     
Sbjct: 357 ----NVYDPCCGTGTIARAAFDLKVESGISYKEALQTTWASDKFSFPLQMATLALTNPKN 412

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKK--WEKDKDA 311
           I  + +  ++D+S    +      +   G        +    +SN PF ++   +K   +
Sbjct: 413 IGEVINIFKKDISDLKAKEDIKLSNPVDGSEIIKQLPQMSSIVSNLPFVRQEVIKKLNPS 472

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           + K   N      G G    +   +   +     L       GR  I++S+S L    + 
Sbjct: 473 IIKNINNKIKKALGKGYQLKAKSDLYAYLPFV--LWDLLKDDGRLGIIISNSWL----ST 526

Query: 372 SGESEIRRWLLENDLIEAIVALPTDL-FFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
               E ++ L +   IEAIV       F   ++ T + IL+    +    + + I+   L
Sbjct: 527 EWGVEFKKALRKFFHIEAIVTSGKGKWFNNADVVTNILILNKINPKADSLEGKEISFVTL 586

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
              I N+    + +       I     +++  K+  +  Y     ++I 
Sbjct: 587 TEDIINKEYNDKNL----INNIARSIRTKKKDKYLNIETYSLEQIKKID 631


>gi|253578942|ref|ZP_04856213.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849885|gb|EES77844.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 274

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 15/233 (6%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +  + E            +S    + L +        +   S S +     E  + 
Sbjct: 3   EEKITGTEKEFLDVFRQLCISRSSWQVWADLMAAMACTLANAVDKSLSRHTAREKEYAEC 62

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  +EK    + I      +E +PD      +  +Y  L        +     F TP
Sbjct: 63  IKRLGGVEKPAKCFAIV--VEALERNPDQ---DFLGRLYMSL-----ELGNHWKGQFFTP 112

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            DV      L +   D + K       ++ DP CG G  L  A N     G +++   + 
Sbjct: 113 YDVCRCMAELTIH--DNMQKLQNKEWVSVNDPACGAGATLIAAANTFRRKGFNYQTQVLF 170

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRF 292
           V    +++  T  +C   + +           +  N   G+TL  +    + F
Sbjct: 171 V--ANDIDRVTAQMCFIQLSLLGCPGYVAVANTLSNPVAGNTLMPEERPEQEF 221


>gi|313896529|ref|ZP_07830080.1| type I restriction modification DNA specificity domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974953|gb|EFR40417.1| type I restriction modification DNA specificity domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 452

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 87/208 (41%), Gaps = 29/208 (13%)

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +  R     + Q +++ +  F  ++F   +S P  G++           ++  +L RF  
Sbjct: 82  EILRAYPHTVVQKTSIYEYEFLREKFDLIMSVPTMGRR-----------NRVDDLNRFM- 129

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                 D  M+ L +L   L    +  G+ AIV+ +   F G   +    +R ++ E   
Sbjct: 130 ----CRDYEMVALENLLLHL----SSAGKLAIVMPAKITFGGGRIAN---LRNFIQEMYC 178

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKR 441
           +E I  LP  +F  T + T+L+++S  KTE+   K    +      +     +++     
Sbjct: 179 LEEIAELPDGIFVGTGVKTHLFVISAGKTEDVTIKRYGFDQGKNRVSRELVLLKDSFVVS 238

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLD 469
             ++ +Q    +D   +R++  + R ++
Sbjct: 239 SELS-EQGDWNVDKLFARQDEDWQRFME 265


>gi|319643753|ref|ZP_07998368.1| hypothetical protein HMPREF9011_03970 [Bacteroides sp. 3_1_40A]
 gi|317384641|gb|EFV65605.1| hypothetical protein HMPREF9011_03970 [Bacteroides sp. 3_1_40A]
          Length = 235

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 106 SFSDNAKAIFEDF-----------DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-- 152
           +FS   +  F DF             +    R+EK    Y+  + F  +        +  
Sbjct: 8   AFSRGYEEAFRDFLDVCLYYLSVGMLAEDYRRVEKRYKPYE-MELFVQMFYRVSEYSEGF 66

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+ +++   +    +        F TP  V  L   +                +++ D
Sbjct: 67  CDVLGDMFMECVSHGNN------GQFFTPIHVADLMACM--------GGNRLKPKQSVCD 112

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L  A+   A+     +    L  +G +++     + V  +++  +  +    
Sbjct: 113 SCCGSGRMLLSAVKKCAEENDGGR----LFCYGSDIDLICVKMTVVNLMMNSVPGEVAWM 168

Query: 272 LSKNIQQGSTLSKDL 286
            +  +Q   +   DL
Sbjct: 169 NTLTMQHWRSYHIDL 183


>gi|25140452|gb|AAN71747.1| SfeI DNA methyltransferase [Enterococcus faecalis]
          Length = 646

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 103/345 (29%), Gaps = 41/345 (11%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           E+    L   +T+  L   I ++    K   E     S    L    L Y      + IE
Sbjct: 12  EFIKKILDKYSTKEILSEIIRNYFTEKKIPIE-----SLKNSLINELLGYSNLDIRNYIE 66

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            +        + NI E L         +      TP  V        L        +S  
Sbjct: 67  ENELHFS---LKNIEEFLYASLSENSKKENGIVYTPSLVSDFIVEETL--------KSVN 115

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPE-THAVCVAGMLI 261
              ++ D +CG G FL  A+ +         +   +     G ++ PE  +   +   L 
Sbjct: 116 KKSSIGDFSCGCGEFLLSALKYAKHIIPSLSLIDFVENNLFGVDILPEHVYWTKIIISLF 175

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT--------GKRFHYCLSNPPFGKKWEKDKDAVE 313
                + + ++  NI  G +  K++           +   + + NPP+ K          
Sbjct: 176 LIENGEDKNNIHFNIVVGDSTDKNILEKFNSEELKNRGIDFIIGNPPYVK---------I 226

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           +E  + +             GS               +  G+   ++ +  L    A   
Sbjct: 227 QELSSNQKKYLQQHYMSCKSGSYNLFYAFIELSLNILSENGKIGYIVPNHLLKMKSAFG- 285

Query: 374 ESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEE 417
              +R  L+++  I  ++    + LF      + +  L   +   
Sbjct: 286 ---LRALLVDSRSIYKVIDFKDNQLFSNAQTYSAILFLDKSEKSH 327


>gi|327403687|ref|YP_004344525.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319195|gb|AEA43687.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 866

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 90/317 (28%), Gaps = 32/317 (10%)

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
                      +    L +      +        + ++    +              +E 
Sbjct: 210 NQNMLNNYKLNIFENNLNAAYLHSFAMQWANDDIVKQNNLLLEAA---------TGSFES 260

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            KD  +     G          K S+ S  F+  +            +A +++       
Sbjct: 261 FKDDNQPTRAVGIFTPPWGVFNKDSEWSSNFVFIMNELEGREKILLNKAVLIVPEGA--- 317

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA---TYLWILSNRKTEERRGKVQL 424
             +G  +   R++L E + I+++V LP   F    IA     + +    K  E   +V  
Sbjct: 318 NYSGGKDLNARKYLTERNYIDSVVTLP---FSSPGIAIKSISIIVFDFNKKSE---EVLF 371

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRP 483
            +    +  + N   ++         QI+ +   ++N  + S+ ++Y+   Y        
Sbjct: 372 AD----FNQMENFDIEQNW------NQIVTVINDKQNLHQVSKKVNYQELQYSEYSWAPT 421

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
             +            EA +    L  + + F +D  K        Y       +  I   
Sbjct: 422 RYIFDAQSLPLKENHEAVLLDSLLLQIKKGFNIDRKKLYEGGEIKYLKTSDLSQNDIYLQ 481

Query: 544 EAKTLKVKASKSFIVAF 560
             + +    +  F    
Sbjct: 482 LNENILGIDADEFEKPI 498


>gi|325269958|ref|ZP_08136567.1| DNA methylase [Prevotella multiformis DSM 16608]
 gi|324987681|gb|EGC19655.1| DNA methylase [Prevotella multiformis DSM 16608]
          Length = 1954

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 80/265 (30%), Gaps = 53/265 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++       L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIAEALHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++  L  D +  +     QG    +  FT   F   +
Sbjct: 147 KPDADIMAFEKDLMT------GKILGHLHPDQKVRV-----QGFEKIEKPFTDY-FDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTGSQDPARRSAPKAIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ N  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPSNAP----IREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298

Query: 414 KTEERRGKVQLINATDLWTSIRNEG 438
             ++R     L +  +L+       
Sbjct: 299 SGKKRE----LYDYEELFVQTEKTP 319


>gi|315059225|gb|ADT73553.1| cpp14 [Campylobacter jejuni subsp. jejuni S3]
          Length = 1932

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 133/421 (31%), Gaps = 82/421 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   + G  + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +                 L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDT--------------TLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNYIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 502

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  D++      ++ +       G   IK  +       LD     ++  +   + 
Sbjct: 503 -------DVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKT 555

Query: 507 L 507
           L
Sbjct: 556 L 556


>gi|261838916|gb|ACX98681.1| hypothetical protein HPKB_0048 [Helicobacter pylori 52]
          Length = 1168

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   +    L+ L     
Sbjct: 173 RYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLIYS--LFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKRLDGIKEIQWLLNEILSSINHVDMDSILKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|57505091|ref|ZP_00371038.1| helicase, Snf2 family [Campylobacter coli RM2228]
 gi|57019134|gb|EAL55847.1| helicase, Snf2 family [Campylobacter coli RM2228]
          Length = 1854

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 133/421 (31%), Gaps = 82/421 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +     +      FSG    P      ++     
Sbjct: 124 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 183

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   + G  + +++P+
Sbjct: 184 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 239

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + ++  + L 
Sbjct: 240 AGIGSFLSYAKNY----------SDKYHFTCVELDT--------------ISANILKHLH 275

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +                 L K S 
Sbjct: 276 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDT--------------TLNKTSV 321

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L +  +      IR ++ E       V L
Sbjct: 322 HNY-FIGNAIKNLK----EDGIAAFVVSSYFLDSKNST-----IRNYIAEQATFLGAVRL 371

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K          I+     +  +   R +  ++R ++ 
Sbjct: 372 PNNAFKKRANTEVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP 424

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
                  D++      ++ +       G   IK  +       LD     ++  +   + 
Sbjct: 425 -------DVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKT 477

Query: 507 L 507
           L
Sbjct: 478 L 478


>gi|323486037|ref|ZP_08091368.1| hypothetical protein HMPREF9474_03119 [Clostridium symbiosum
           WAL-14163]
 gi|323400604|gb|EGA92971.1| hypothetical protein HMPREF9474_03119 [Clostridium symbiosum
           WAL-14163]
          Length = 277

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y  L     +  +     F TP  V  + + +  +  D+  ++   +  ++ DP
Sbjct: 92  DFLGEMYMQL-----NLGNHWKGQFFTPYCVCKMMSEITCEDVDSHIEKQGYL--SICDP 144

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            CG G  L  A N +  C   H     +V   Q+++  T  +C   + +  
Sbjct: 145 ACGAGATLIAAANTMKKC--KHNFQNHVVFVAQDIDRITGMMCYIQLSLLG 193


>gi|317013141|gb|ADU83749.1| putative adenine specific DNA methyltransferase [Helicobacter
           pylori Lithuania75]
          Length = 839

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 26/244 (10%)

Query: 42  RRLECALEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRN 98
           + L+ AL   +  V+    +  F     +  SF   +       T    ++ L     + 
Sbjct: 173 KYLKDALIKYQEKVQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFIAKLNHPFEKI 232

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD-R 153
           NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++     D   D  
Sbjct: 233 NLDNVRSSIPENFAVIREMADFLKKLDAIKEIQWLLNEILNSINHVDMDSIIKDLNDDKD 292

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT----- 208
              + YE  +  +  ++ E    + TP  VV      L       FK++P  +++     
Sbjct: 293 PYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSTLDNE 352

Query: 209 ---LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHAVC 255
              L D   GTG FL +A     +              K   +L   +G E     +A+ 
Sbjct: 353 NIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIA 412

Query: 256 VAGM 259
              +
Sbjct: 413 HLNL 416


>gi|313123381|ref|YP_004033640.1| adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279944|gb|ADQ60663.1| Adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 332

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 97/320 (30%), Gaps = 43/320 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIR 164
            +D     F+  +  S   R+E      K           L            +Y  L+ 
Sbjct: 26  LADALVETFD--NLESGEIRVEMGAPDQKTVAELEERYAALDYKNWSKAQKEQVYGLLVL 83

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +  ++    A    TP     L   +L    D L    P   + L DP  G+G  L    
Sbjct: 84  KAVNDDGWDANQMPTPP----LLATVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSVD 136

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +A               G + + E   +      +  L++D          Q +    
Sbjct: 137 QQLAAQNH---SEDRFDLVGLDNDEEMLNLADVAAHLAGLKADF-------YCQDALTGW 186

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +         +S+ P G        A +   KN +L        +  +G     +    
Sbjct: 187 PVKP----DVVVSDLPIG------FYANDDNAKNFDL--------RTKEGHAYAHVLFVE 228

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           ++       G A +++  + L     G+  ++   WL     ++AIV LP+ LF      
Sbjct: 229 QIVKNLAEDGFAFLLVPQNML----TGTVGADFMPWLASKVYLQAIVQLPSSLFQSKISQ 284

Query: 405 TYLWILSNRKTEERRGKVQL 424
             + I  N    +   +V L
Sbjct: 285 KSILIFQNHGQSKPPKEVLL 304


>gi|302874984|ref|YP_003843617.1| N-6 DNA methylase [Clostridium cellulovorans 743B]
 gi|307690399|ref|ZP_07632845.1| N-6 DNA methylase [Clostridium cellulovorans 743B]
 gi|302577841|gb|ADL51853.1| N-6 DNA methylase [Clostridium cellulovorans 743B]
          Length = 577

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 97/306 (31%), Gaps = 35/306 (11%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++ I  L K  +  K    F  + L    +   + S I E   + F  +         T
Sbjct: 4   FTNDIEELYKIIISKKDID-FKNLALTNFVLKFEISSKISEFFYKNF-HDRKTVKGVVYT 61

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P ++ +      +  ++ +          + D  CGTG  L    NH+ +      I  I
Sbjct: 62  PINISNYMINNTITKEEIIS----NPYLKICDLACGTGNILIPLYNHLLNI-FEENINEI 116

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS------KNIQQGSTLSKDLFTGKR-- 291
              +  E+      +    +    ++S   + L+        +   +  ++D  T  +  
Sbjct: 117 NCKNSMEITDIKAHILKNNLFGYDIDSFALKLLTIDLFKEHGVIFRNLYNEDFLTCDKDD 176

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   + NPP+          + KE+      +F        D S  F     N L     
Sbjct: 177 YDVFIGNPPYIGH-----KDINKEYSKALKLKFKSIYSDKGDISYCFFQEALNHL----E 227

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL----PTDLFFRTNIATYL 407
             G+   + S   L +         +RR L  N  I  IV      P   F   N+   +
Sbjct: 228 DSGKLTFITSRYFLESPSGSI----LRRMLKVNFDILKIVDFYGIRP---FSNANVDPVI 280

Query: 408 WILSNR 413
             LS  
Sbjct: 281 IFLSKE 286


>gi|108763675|ref|YP_633998.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622]
 gi|108467555|gb|ABF92740.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622]
          Length = 553

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 88/251 (35%), Gaps = 32/251 (12%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+ +F S   +    F TP  +     AL L               T+ DP+CG G F
Sbjct: 45  EKLVLQFPSLDRKAVGAFFTPAPLAERTLALALQHVGGGPL-------TVVDPSCGAGAF 97

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT A           ++ P +   G EL+PE   +C A +    + +             
Sbjct: 98  LTAA----------SRLRPGVRLCGLELDPEVARLCQARVPEATVRAGDALRDGLEPLLA 147

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA-VEKEHKNGELGRFGPGLPKISDGSMLF 338
           +T              + NPP+       KD       +        PG     D +  F
Sbjct: 148 TTPPDHQ------ELWVGNPPYNGTSSVLKDPGTYARLRALLPLALMPGTSLRDDFAF-F 200

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+  A++L   P   G  A ++ +S L         + +R+ LLE   +  +V L    F
Sbjct: 201 LLVAAHRLATRP---GALAFIIPASFL----DAFMYAPLRQSLLETLSLREVVDLGPGAF 253

Query: 399 FRTNIATYLWI 409
             T + T + +
Sbjct: 254 AGTQVRTCITV 264


>gi|109946823|ref|YP_664051.1| putative adenine specific DNA methyltransferase fragment 1
           [Helicobacter acinonychis str. Sheeba]
 gi|109714044|emb|CAJ99052.1| putative adenine specific DNA methyltransferase fragment 1
           [Helicobacter acinonychis str. Sheeba]
          Length = 864

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 26/245 (10%)

Query: 42  RRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRN 98
           + L+ AL   +    V   +  F     +  SF   +       T    L+ L     + 
Sbjct: 170 KYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKI 229

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPD----TVPDR 153
           NL++  +S   N   I E  DF   +  +++   LL +I    + +++       +    
Sbjct: 230 NLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKD 289

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT----- 208
              + YE  +  +  E+ E    + TP  VV      L       FK++P  +++     
Sbjct: 290 PYLHFYETFLSAYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNE 349

Query: 209 ---LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHAVC 255
              L D   GTG FL +A     +              K   +L   +G E     +A+ 
Sbjct: 350 NIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAIA 409

Query: 256 VAGML 260
              + 
Sbjct: 410 HLNLY 414


>gi|332672840|gb|AEE69657.1| probable adenine specific DNA methyltransferase [Helicobacter
           pylori 83]
          Length = 843

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|237712978|ref|ZP_04543459.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237717780|ref|ZP_04548261.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|256842587|ref|ZP_05548088.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262409571|ref|ZP_06086112.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446953|gb|EEO52744.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229452879|gb|EEO58670.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|256735724|gb|EEU49057.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262352585|gb|EEZ01684.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 241

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 106 SFSDNAKAIFEDF-----------DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-- 152
           +FS   +  F DF             +    R+EK    Y+  + F  +        +  
Sbjct: 14  AFSRGYEEAFRDFLDVCLYYLSVGMLAEDYRRVEKRYKPYE-MELFVQMFYRVSEYSEGF 72

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+ +++   +    +        F TP  V  L   +         +      +++ D
Sbjct: 73  CDVLGDMFMECVSHGNN------GQFFTPIHVADLMACM--------GENRLKPKQSVCD 118

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L  A+   A+     +    L  +G +++     + V  +++  +  +    
Sbjct: 119 SCCGSGRMLLSAVKKCAEENDGGR----LFCYGSDIDLICVKMTVVNLMMNSVPGEVAWM 174

Query: 272 LSKNIQQGSTLSKDL 286
            +  +Q   +   DL
Sbjct: 175 NTLTMQHWRSYHIDL 189


>gi|295115656|emb|CBL36503.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SM4/1]
          Length = 300

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 71/257 (27%), Gaps = 14/257 (5%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
              T+    +       S   ++   K        T  +    +       +  S     
Sbjct: 35  FGETKKKDEKTPEVITKSEPKIDWEDKFLKSFQKLTYRHRAWDVWRDYVLLHACSISNVL 94

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
                   E           ++   ++     ++ + L  +   D  +  ++  L     
Sbjct: 95  DKENYGQREKRYLKIIHQYSKEEQAIFPELAAYTTMALDQNQEQD-FLGKMFMRL----- 148

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              +  A  F TP  V  L   ++    D L K       ++ DP CG G  L   ++ +
Sbjct: 149 DLGNRSAGQFFTPYHVCELMAEVVAT--DVLEKIEQYGYISINDPCCGAGATLIAGVHVI 206

Query: 228 ADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR--RDLSKNIQQGST 281
                H   P     H     Q+++     +C   + +  L    +    ++  +    +
Sbjct: 207 RKQLEHCDPPRNYQNHILVVAQDVDEIVGLMCYIQISLLGLAGFIKIGNSITDPMSTDDS 266

Query: 282 LSKDLFTGKRFHYCLSN 298
                +T   F    S 
Sbjct: 267 SENYWYTPMYFSDVWST 283


>gi|209527886|ref|ZP_03276375.1| hypothetical protein AmaxDRAFT_5201 [Arthrospira maxima CS-328]
 gi|209491689|gb|EDZ92055.1| hypothetical protein AmaxDRAFT_5201 [Arthrospira maxima CS-328]
          Length = 1054

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 83/298 (27%), Gaps = 55/298 (18%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D +P   +S+IYE  + +   + +       TP  +V      +L  D   +      
Sbjct: 330 SFDAIPLEFISSIYEEFVDK--GKKNADKGVHYTPGHIVDFILDGVLPWDSGEWN----- 382

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAV 254
              + DP CG+G FL  A   +            +              G ++  +   V
Sbjct: 383 -LKILDPACGSGIFLVKAFQRLIYRWKKSYPNEEITAPILQQILTDNLVGVDINSQAVRV 441

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSK-----DLFTGK-----------RFHYCLSN 298
               + +   +    R   + ++      K     D F              ++   + N
Sbjct: 442 ASFSLYLTMCDEIDPRYYWEQVRFPRLRDKRLISADFFQENVEGFRTVADAGQYDLVIGN 501

Query: 299 PPFGKKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            P+GK       K   +        G  GP     S                    G   
Sbjct: 502 APWGKNTVTQFAKSWAKTNKWPIPYGNIGPLFLPKSAA--------------LAKAGQPI 547

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILS 411
           A++  +  L   +  +     R  L     ++ IV L      LF      T +  +S
Sbjct: 548 AMLQPALALIFNQISTA-KRFREKLFYEYKVDEIVNLSALRFGLFKDAISPTCIVTIS 604


>gi|189460986|ref|ZP_03009771.1| hypothetical protein BACCOP_01633 [Bacteroides coprocola DSM 17136]
 gi|198277732|ref|ZP_03210263.1| hypothetical protein BACPLE_03955 [Bacteroides plebeius DSM 17135]
 gi|265768072|ref|ZP_06095454.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|189432325|gb|EDV01310.1| hypothetical protein BACCOP_01633 [Bacteroides coprocola DSM 17136]
 gi|198269429|gb|EDY93699.1| hypothetical protein BACPLE_03955 [Bacteroides plebeius DSM 17135]
 gi|263252323|gb|EEZ23859.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 241

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 106 SFSDNAKAIFEDF-----------DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-- 152
           +FS   +  F DF             +    R+EK    Y+  + F  +        +  
Sbjct: 14  AFSRGYEEAFRDFLDVCLYYLSVGMLAEDYRRVEKRYKPYE-MELFVQMFYRVSEYSEGF 72

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+ +++   +    +        F TP  V  L   +                +++ D
Sbjct: 73  CDVLGDMFMECVSHGNN------GQFFTPIHVADLMACM--------GGNRLKPKQSVCD 118

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L  A+   A+     +    L  +G +++     + V  +++  +  +    
Sbjct: 119 SCCGSGRMLLSAVKKCAEENDGGR----LFCYGSDIDLICVKMTVVNLMMNSVPGEVAWM 174

Query: 272 LSKNIQQGSTLSKDL 286
            +  +Q   +   DL
Sbjct: 175 NTLTMQHWRSYHIDL 189


>gi|330990456|ref|ZP_08314415.1| putative helicase [Gluconacetobacter sp. SXCC-1]
 gi|329762493|gb|EGG78978.1| putative helicase [Gluconacetobacter sp. SXCC-1]
          Length = 1347

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/435 (11%), Positives = 119/435 (27%), Gaps = 66/435 (15%)

Query: 69   LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
             +  +++          +     G +   +N        S   + + +  D  S     +
Sbjct: 647  EDEVIEMLAQHLITRPVFEALFAGHSFIGDNPM------SRAMQTVLDALDKHSLHKETD 700

Query: 129  KAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +    Y    +  SGI+         V+  +Y+   ++    + +      TP +VV   
Sbjct: 701  RLEAFYASVRERASGIDTSYGRQK--VIKELYDGFFQKAFPRLKDRLGIVYTPIEVVDFI 758

Query: 188  TALLLDPDDALFKESP-GMIRTLYDPTCGTGGF---LTDAMNHVADCGSHHKIPPILVPH 243
               + D  ++ F ++       + DP  GTG F   L  +     +   H         H
Sbjct: 759  IRSINDVLESEFGQTLGSKGVHIMDPFTGTGTFITRLLQSGLITKEQMLHKYRQE---LH 815

Query: 244  GQELEPETHAVCVAGM-----LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH----- 293
              E+    + +    +      +     +P   +            DL +          
Sbjct: 816  ANEIVLLAYYIASINIEATFSDLMDGNYEPFEGICLTDTFRLNEPHDLVSSTLEDNNRRI 875

Query: 294  ---------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFL 339
                       + NPP+    E   D  +         R      + S  +         
Sbjct: 876  RKQKKLDIRVIMGNPPYSVGQESGNDNNQNVAYPTLDARIAETYAERSTATNKRALYDSY 935

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTD-- 396
            +             G    V ++  L    A      +R+ L E    I  +  L  +  
Sbjct: 936  IRAIRWSSDRIGDCGVIGFVTNAGFLDANTANG----LRQCLAEEFSSIH-VFHLRGNQR 990

Query: 397  ------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-- 441
                        +F   +     + ++      +++G++   +  D  T  +   + +  
Sbjct: 991  TSGETSRKEGGKIFDAGSRAPIAISLMVKNPNAKKQGRILFYDIGDYLTREQKLKRIQEL 1050

Query: 442  ---RIINDDQRRQIL 453
                 +  +   QI+
Sbjct: 1051 ASVNSLTGEGLWQII 1065


>gi|295086872|emb|CBK68395.1| Helicase conserved C-terminal domain./SNF2 family N-terminal
           domain./N-6 DNA Methylase. [Bacteroides xylanisolvens
           XB1A]
          Length = 1947

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 81/265 (30%), Gaps = 53/265 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++  L  D +  +     QG    +  FT   F   +
Sbjct: 147 KPDADIMAFEKDLMT------GKILGYLHPDQKVRV-----QGFEKIEKPFTDY-FDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTGSQDPARRSAPKAIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ N  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPSNAP----IREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298

Query: 414 KTEERRGKVQLINATDLWTSIRNEG 438
             ++R     L +  +L+       
Sbjct: 299 SGKKRE----LYDYEELFVQTEKTP 319


>gi|240948005|ref|ZP_04752423.1| N-6 DNA methylase [Actinobacillus minor NM305]
 gi|240297675|gb|EER48149.1| N-6 DNA methylase [Actinobacillus minor NM305]
          Length = 581

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 20/229 (8%)

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F K +  +   ++    + +  RF      + +     + HL             A +++
Sbjct: 206 FSKGFLAEPWGMKVNINDQDNQRFSVKSNNLQNY---LIQHLF------QQVNDFAIVIM 256

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             + L +      E  +R+WLLE   ++A+++LP+ L   T   + L I       E   
Sbjct: 257 PINGLHSSVQS--EELMRQWLLEQGYLKAVISLPSGLSISTMTNSALLIFDFSTKYETVN 314

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR--I 478
            + L +    +   RN   K   +      +++DI  S    K S+ +D ++       +
Sbjct: 315 FISLKD--SEFVEKRNRETKLTQL-----DKLIDIIDSNLAHKSSKKVDVKSILNNSYIL 367

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
              R +  +   D   + +         L  +++   +  LK    +++
Sbjct: 368 NPERYVLDNSTQDALNILQEYETKKLGDLVDIYRPIPVSKLKSDGSEMF 416


>gi|208778901|ref|ZP_03246247.1| adenine specific DNA methyltransferase [Francisella novicida FTG]
 gi|208744701|gb|EDZ90999.1| adenine specific DNA methyltransferase [Francisella novicida FTG]
          Length = 1078

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 82/601 (13%), Positives = 176/601 (29%), Gaps = 120/601 (19%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +     +     A    +  L++F +         S   L  L       N++  I    
Sbjct: 210 DIYAQTLAYGMFAARYHDEVLDTFSRQEAAEKIPKSNPFLRRLFDYVAGTNIDDRIKHTV 269

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           DN   +F   D    +++  ++        +F                  YE  +  + S
Sbjct: 270 DNLADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDS 311

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------------- 208
           ++ +    + TP+ VV      + +   + F  S G+  T                    
Sbjct: 312 KLRKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRSKSGY 371

Query: 209 -----------LYDPTCGTGGFLTDAMNHVADCG---------SHHKIPPILVPHGQELE 248
                      + DP  GTG FL +A+  + +            + +   I   +G EL 
Sbjct: 372 KQIEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELL 431

Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNI----------QQGSTLS------------- 283
             ++A+      ML+      P+   S+                T +             
Sbjct: 432 MASYAMAHLKLDMLLTDTGYKPKSSQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEA 491

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL- 342
             +         + NPP+        + + K  ++ +         +    +  ++  + 
Sbjct: 492 NQIKKDTPVMVVMGNPPYSGISSNTGEWITKLIEDYKYVDGVHFNERKHWLNDDYVKFMR 551

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
             +  +  NG G  A +     L           +R  LL+  D I   + L  +     
Sbjct: 552 YGQYYIEKNGSGVLAFINPHGFL----DNPTFRGMRYSLLKTYDKIYT-IDLHGN----- 601

Query: 402 NIATYLWILSNRKTE----ERRGKVQLI-NATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
                    S +K       +   V  I     +   ++   KK   + +       D+Y
Sbjct: 602 ---------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAEVYH---YDLY 649

Query: 457 VSRENGKFSRMLDY--RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
             R N K+  ++     + G+++++ L+P       D +     E   +   L P + + 
Sbjct: 650 GKR-NNKYEFLIQNSLSSIGFKKVEYLKPYYFFIPKDDSQRTNYEKGFSVVSLFPENVTG 708

Query: 515 WLDILKPM-----MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
            + +          QQ+          +++  + + K    K    +I+   N     D 
Sbjct: 709 IVTMGDSFAIAESKQQLQDKLEDFLQTEKTEDNLKQKYKLGKNYAKWILENKNNISLDDN 768

Query: 570 R 570
           +
Sbjct: 769 K 769


>gi|24213603|ref|NP_711084.1| methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658571|ref|YP_002657.1| site-specific modification DNA-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|24194397|gb|AAN48102.1| methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601815|gb|AAS71294.1| site-specific modification DNA-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 543

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 31/260 (11%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +  +  ++    F TP  V H     +L  +     E    ++ + DP  G G F   
Sbjct: 1   MSQEVNRKNKFLGQFFTPERVAHFLVDWVLGAERITSSEG---LKRILDPAIGNGVFFES 57

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
            +N + D  +           G +L+ E  +   A +  R  +S       ++       
Sbjct: 58  VLNRLPDLNAEW--------VGFDLDIECLSSSRAVLENRISDSSILSFYDRDFLL---- 105

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  ++F   L NPP+ K  +K+      +   G+  R  PG         L++  L
Sbjct: 106 ---QEENQKFDVILCNPPYRKINDKNYSKELIQQFEGKSDRKLPGTAN------LYVFFL 156

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFR 400
              L L  + GGRAA ++      +G        I+  L E+ L+ ++        LF  
Sbjct: 157 LKCLNLI-HVGGRAAFLVPQDFFNSGYG----VFIKSVLQESGLLHSLFLFSPQDILFDE 211

Query: 401 TNIATYLWILSNRKTEERRG 420
              ++ + +  N + E++ G
Sbjct: 212 AITSSCILLFENSEREKKSG 231


>gi|88858543|ref|ZP_01133185.1| probable site specific DNA-methyltransferase [Pseudoalteromonas
           tunicata D2]
 gi|88820160|gb|EAR29973.1| probable site specific DNA-methyltransferase [Pseudoalteromonas
           tunicata D2]
          Length = 490

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 70/247 (28%), Gaps = 45/247 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 + TP     L  A                   ++DP  G    LT  +      
Sbjct: 16  RRATGYYATP-----LLVAEYFYQRCVAINPE---GHMVFDPCVGQEELLTPFIAANTKQ 67

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K+    V                   +R L       L  +     T         
Sbjct: 68  AERFKLQSTDV-------------------LRHLSVYQSHFLQGDFLL--TPKAQQTKAS 106

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
              + ++NPP+      + D +++   + +      G+  +              +    
Sbjct: 107 ECDFIVANPPYNC---HEVDYIKQHKADLKHKFKDVGVHNM-------YSMFLAAMIDKA 156

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
             G   A +  SS L         S++R+ +L + +I  ++  PTDLF     N+ T + 
Sbjct: 157 ADGCVIATICDSSFL----TAKVHSKLRKKILSSCIIHDLILCPTDLFLDQGANVRTCIL 212

Query: 409 ILSNRKT 415
           +L   + 
Sbjct: 213 VLQKGRN 219


>gi|225869333|ref|YP_002745281.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702609|emb|CAX00640.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2281

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 109/432 (25%), Gaps = 86/432 (19%)

Query: 20  EDLWGDFKHTDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV-A 76
            DL       DF  VI   P   LR LE   +       E+       + +L+ F  +  
Sbjct: 483 NDLIRVELQNDFTDVIEQNPVLFLRTLEGITQALHVPSVEEKEKVEEPHQELDLFFFMDM 542

Query: 77  GYSFYNTSEYSLST---LGSTNTRNNLESYIASFSDNAKAIFE--DFDFSSTIARLEKAG 131
                  S+ + S             L                  DF F   +       
Sbjct: 543 EEQKEPVSQITASVSSNKREAKQEEALSEDELELEPEVTETLPVTDFYFPEVLTDFYPKT 602

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTP-----RDV 183
              K+  N + + L      +   +   E  L+ ++        E F    P     R+ 
Sbjct: 603 TRDKVETNVAAVRLVKSLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREA 662

Query: 184 VHLAT-----------ALLLDPDDALFKESPG--------MIRTLYDPTCGTGGFLTDAM 224
           +               +L     D                    + DP+ GTG F     
Sbjct: 663 LKTLVTDKEYSDMKQSSLTAYYTDPHLIRQMWEKLERDGFTGGKILDPSMGTGNFFAAMP 722

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            H+ +             +G EL+  T A+         L  +   ++            
Sbjct: 723 KHLRENSE---------LYGVELDTITGAIAK------HLHPNSHIEVKG-------FET 760

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F    F   LSN PF      D                        D   +   +   
Sbjct: 761 IAFNDNSFDLVLSNVPFANIRIADSHY---------------------DKPYMIHDYFVK 799

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K     + GG+ AI+ S+  +           I + + E       V LP   F     T
Sbjct: 800 KSLDLVHDGGQVAIISSTGTMDKRT-----ENILQNIRETTDFLGGVRLPDSAFKAIAGT 854

Query: 402 NIATYLWILSNR 413
           ++ T +      
Sbjct: 855 SVTTDMLFFQKH 866


>gi|317179844|dbj|BAJ57630.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32]
          Length = 1112

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|256838486|ref|ZP_05543996.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739405|gb|EEU52729.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1944

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 80/265 (30%), Gaps = 53/265 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++  L  D +  +     QG    +  FT   F   +
Sbjct: 147 KPDADIMAFEKDLMT------GKILGHLHPDQKIRV-----QGFEKIEKPFTDY-FDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E               I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTGSHDMARRSAAKTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ N  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPSNAP----IREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298

Query: 414 KTEERRGKVQLINATDLWTSIRNEG 438
             ++R     L +  +L+       
Sbjct: 299 SGKKR----VLYDYEELFVQTEKTP 319


>gi|332885017|gb|EGK05270.1| hypothetical protein HMPREF9456_02940 [Dysgonomonas mossii DSM
           22836]
          Length = 1797

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 96/295 (32%), Gaps = 58/295 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV              F ++   I TL DP+ G GGF +            +  
Sbjct: 107 FYTPPLVVQALA--------DTFSDNDVQINTLLDPSAGMGGFSSAFSFRYLKADIINFE 158

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++  +  D +  +    +   +   +      F    
Sbjct: 159 KDLLT----------------GKILSHINPDDKV-IVDGFETIESRYNNH-----FDVVT 196

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG+    D + ++ +  + +  R                 +   K       GG  
Sbjct: 197 SNIPFGEMSVFDAEFMKTDKLHRDSTR-------------AIHNYFFLKGVETLREGGLM 243

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           +R+WL+ N  + + + LP +LF     T + + L +L   
Sbjct: 244 AFITSQGVL----NSPNNQAVRQWLMNNTNLVSAIRLPNNLFVENAGTEVGSDLIVLQKN 299

Query: 414 --KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
             K E  R + + +   +L + I          + +  ++I+     R+   + +
Sbjct: 300 TLKQELTRQEKKFLTTYELSSGITINS------SFENLQRIVHTKGFRDTDPYGK 348


>gi|320450645|ref|YP_004202741.1| N-6 DNA methylase family [Thermus scotoductus SA-01]
 gi|320150815|gb|ADW22193.1| N-6 DNA methylase family [Thermus scotoductus SA-01]
          Length = 1093

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 99/305 (32%), Gaps = 42/305 (13%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIA-SFSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNF 140
              +       T+    L    +   S      FE+  FS  +    E    L ++    
Sbjct: 307 PERWREFVQFLTDKATALVKVASLDLSQAYAEPFEEETFSWILETNGEMDLALQRLILRV 366

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +  +     + + V+ +IY++ +     +  +   +F TP++VV L         +    
Sbjct: 367 NAYDFS--GLSEEVLGDIYQNFLP---PDKRKRLGEFYTPKEVVDLILR------ETALA 415

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-----VPHGQELEPETHAVC 255
               +   + DP CG+G FL   ++H  +      +            G +L P    V 
Sbjct: 416 HGESLYPEVLDPACGSGSFLVRYLHHRMEDAKARGVHLDSEALSRSIWGFDLNPFAAYVS 475

Query: 256 VAGML---IRRLESDPR-RDLSKNIQQGSTLS---------KDLFTGKRFHYCLSNPPFG 302
           +  +L   +R  +  P     + N     +           ++    K + Y + NPP+ 
Sbjct: 476 MFQLLWGFLRLKKGKPEVHVYNLNSLLDDSDIAFLVKRSPGEEARDEKEWDYVVGNPPYI 535

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN----KLELPPNGGGRAAI 358
           +          ++      G+ G       D  +LFL           +     GG+  +
Sbjct: 536 RAERAKYGQAIRDLYREVWGQNG-------DTGLLFLWRAMRGSGATAKPWVKKGGKLGM 588

Query: 359 VLSSS 363
           V+S  
Sbjct: 589 VVSGG 593


>gi|308183463|ref|YP_003927590.1| adenine specific DNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308065648|gb|ADO07540.1| adenine specific DNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 1154

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL     E   S++ + +  +    +  E F     ++   T    L+ L     
Sbjct: 174 KYLKDALIQYHEEQQVSSIFKNFKEYLYEELSFEDF--SDAFAQTLTYSLFLAKLNHPFE 231

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + +  +  +S   N   I E  DF   +  +++   LL +I    + +++     D   D
Sbjct: 232 KIDFNNVRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILSLINHVDMDSIIKDLNDD 291

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 292 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTRFKDAPLGLKSALD 351

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 352 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 411

Query: 254 VCVAGM 259
           +    +
Sbjct: 412 IAHLNL 417


>gi|266621005|ref|ZP_06113940.1| putative type I restriction modification system related protein
           [Clostridium hathewayi DSM 13479]
 gi|288867321|gb|EFC99619.1| putative type I restriction modification system related protein
           [Clostridium hathewayi DSM 13479]
          Length = 300

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 74/257 (28%), Gaps = 14/257 (5%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
              T+    +       S   ++   K        T       +       +  S     
Sbjct: 35  FGETKKKGEKPPEVTTKSEPKIDWEDKFLKSFQKLTYRRRAWDVWRDYILLHACSISNVL 94

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             +     E           ++   ++     ++ + L  +   D  +  ++  L     
Sbjct: 95  DKDNYDQREKLYLKIIHQYSKEEQAIFPELAAYTTMALDRNQEQD-FLGKMFMRL----- 148

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              +  A  F TP  V  L   ++    +AL K       ++ DP CG G  L   ++ +
Sbjct: 149 DLGNRSAGQFFTPYHVCELMAEVVAT--NALEKIEQYGYISINDPCCGAGATLIAGVHVI 206

Query: 228 ADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR--RDLSKNIQQGST 281
                H + P     H     Q+++     +C   + +  L    +    ++  I    +
Sbjct: 207 RKQLEHCEPPRNYQNHILVVAQDVDEIVGLMCYIQISLLGLAGFIKIGNSITDPISTDDS 266

Query: 282 LSKDLFTGKRFHYCLSN 298
             K  +T   F    S 
Sbjct: 267 SEKYWYTPMYFSDVWST 283


>gi|254455208|ref|ZP_05068642.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198263492|gb|EDY87765.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 274

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           K  + + +  D+ P  ++  +Y  L        ++ A  F TP ++  L   L       
Sbjct: 76  KLMAHLVMALDSEPRDILGPLYMEL-----EIANKDAGQFFTPPELSELMANLTFGDMLG 130

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                P +  T  +P CG GG +   +  +   G  
Sbjct: 131 RLDSQPFI--TAGEPACGGGGMILALVKVMTRAGHD 164


>gi|327413038|emb|CAX68066.1| conserved hypothetical protein [Salmonella enterica subsp. VII]
          Length = 644

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
           +S     +  +  N      +F  +       +   ST      + LL ++ +       
Sbjct: 442 FSDFVHMAACSLYNAIHRDETFEADYMQRVARY---STEDAHNMSRLLAEVIEGL----- 493

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +  P   +  I+ +L        +     + TP +V +  + + L    ++       
Sbjct: 494 --EFCPTDFLGQIFMNL-----ELGNTRHGQYFTPYNVCYTMSRMTLSDRLSVLTSGERD 546

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             T+ DP CG GG +      + + G +      ++ +  +++P    +C   + +  +
Sbjct: 547 FITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYCVDIDPVAAMMCYIQLSLMGI 603


>gi|82492150|gb|ABB77947.1| methyltransferase [Environmental halophage 1 AAJ-2005]
          Length = 571

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 111/411 (27%), Gaps = 94/411 (22%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
           R +  L    +   EK  A        +S ++         ++  L+T  +  T      
Sbjct: 104 RFDAVLTELETGTGEKRWAGQELETQYQSVIEKCREQPGEVTDRELATGLAAATSGTHTD 163

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            + +F   A    + F+   T   +  +          +  ++   TV +      +   
Sbjct: 164 ILGAFYQLAGQTSDQFNQYFTPPNVATSVAAIGRITA-AEFDVPEPTVENVTGQASFRTF 222

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
                   ++G  + + P+D                 +        ++DP CG+G  L  
Sbjct: 223 --------TDGGAEPVVPQD----------------SESDDESPEVVFDPACGSGRLLAA 258

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--- 279
           A           +    +V  G E+E  T  +    M +        R  S  ++     
Sbjct: 259 AA----------RTSDTVVGLGWEVERTTARMAAVTMALTGTPGWIVRGDSPTMEANTVW 308

Query: 280 ------STLSKDLFTG----------------------------------------KRFH 293
                  T  ++L                                           +   
Sbjct: 309 RVTPDADTPLQELSPDDPVFPTETLPAGADRPTVPALGESGASAAECIEEITHVIERGVD 368

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML------FLMHLANKLE 347
             ++NPPF      D DA + + +     R       + +          +   +     
Sbjct: 369 LTIANPPFDTTDVSDVDAGDGDRETCSPSRLDVTHRSMDNPDSALRSSQRYEWMMLEHSL 428

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                 G    ++  S L    +   + + R W+L++  + A + LP   F
Sbjct: 429 NVTRPSGAVCCIVPESLL----SNPSQKDARAWMLDSTYLAASIELPEATF 475


>gi|189468324|ref|ZP_03017109.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM
           17393]
 gi|189436588|gb|EDV05573.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM
           17393]
          Length = 1908

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S  +     F TP  +V+   + L +   +             DP+ GTG F++   +  
Sbjct: 96  SVKASTFTAFYTPPAIVNAIASSLGEHGVSPG--------RFLDPSSGTGNFVSAFRSQC 147

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                +    P +V +  E +  T  +      + RL  + + ++    +          
Sbjct: 148 HSASGN---TPEIVAY--EKDLLTGRI------LARLHPEAQVNIKGFEELPP------H 190

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    SN PFG     D    +    NG   RF                +   K  
Sbjct: 191 RNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRFALNSLHN---------YFFAKGL 236

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG  A + S   + +  A      +R++L+    + + V LP +LF     T + 
Sbjct: 237 DAVREGGVLAFITSQGVMNSAMAYP----VRQYLMNRSRLLSAVRLPNNLFTDYAGTEVG 292

Query: 405 TYLWILSNRKTEERR 419
           + L IL      +R 
Sbjct: 293 SDLIILQKDTLSQRE 307


>gi|29347736|ref|NP_811239.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339637|gb|AAO77433.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1908

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S  +     F TP  +V+   + L +   +             DP+ GTG F++   +  
Sbjct: 96  SVKASTFTAFYTPPAIVNAIASSLGEHGVSPG--------RFLDPSSGTGNFVSAFRSQC 147

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                +    P +V +  E +  T  +      + RL  + + ++    +          
Sbjct: 148 HSASGN---TPEIVAY--EKDLLTGRI------LARLHPEAQVNIKGFEELPP------H 190

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    SN PFG     D    +    NG   RF                +   K  
Sbjct: 191 RNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRFALNSLHN---------YFFAKGL 236

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG  A + S   + +  A      +R++L+    + + V LP +LF     T + 
Sbjct: 237 DAVREGGVLAFITSQGVMNSAMAYP----VRQYLMNRSRLLSAVRLPNNLFTDYAGTEVG 292

Query: 405 TYLWILSNRKTEERR 419
           + L IL      +R 
Sbjct: 293 SDLIILQKDTLSQRE 307


>gi|301513523|ref|ZP_07238760.1| putative restriction-modification protein [Acinetobacter baumannii
           AB058]
          Length = 128

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
               GGR A+V+    LF     +  + +R++L EN  ++A+V+LP ++F     + T +
Sbjct: 3   ATKKGGRMALVVPEGFLFK----AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNI 58

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
              +N         V   N T+   S+ +  +K
Sbjct: 59  LYFTNCHNGRTNSDVFYYNVTNDGLSLDSFRRK 91


>gi|255692111|ref|ZP_05415786.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
 gi|260622210|gb|EEX45081.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
          Length = 1908

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 83/255 (32%), Gaps = 46/255 (18%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S  +     F TP  +V+   + L +   +             DP+ GTG F++      
Sbjct: 96  SVKASTFTAFYTPPAIVNAIASSLGEHGVSPG--------RFLDPSSGTGNFVSA---FR 144

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
             C S     P +V +  E +  T  +      + RL  + + ++    +          
Sbjct: 145 PQCHSASGNTPEIVAY--EKDLLTGRI------LARLHPEAQVNIKGFEELPP------H 190

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    SN PFG     D    +    NG   RF                +   K  
Sbjct: 191 RNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRFALNSLHN---------YFFAKGL 236

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG  A + S   + +  A      +R++L+    + + V LP +LF     T + 
Sbjct: 237 DAVREGGVLAFITSQGVMNSAMAYP----VRQYLMNRSRLLSAVRLPNNLFTDYAGTEVG 292

Query: 405 TYLWILSNRKTEERR 419
           + L IL      +R 
Sbjct: 293 SDLIILQKDTLSQRE 307


>gi|317181337|dbj|BAJ59121.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57]
          Length = 832

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|238854822|ref|ZP_04645152.1| adenine-specific DNA methylase [Lactobacillus jensenii 269-3]
 gi|260664110|ref|ZP_05864963.1| adenine-specific DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282933900|ref|ZP_06339248.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
 gi|238832612|gb|EEQ24919.1| adenine-specific DNA methylase [Lactobacillus jensenii 269-3]
 gi|260561996|gb|EEX27965.1| adenine-specific DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281301989|gb|EFA94243.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
          Length = 332

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 98/308 (31%), Gaps = 40/308 (12%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +  +   ++E      +     S    EL+ D +P      ++  L  +   E       
Sbjct: 36  NLENGKIKVEMGAPDKEAVALLSKKYQELNYDKLPSTQKYLVFTLLTLKAMKEDGRNYSQ 95

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP  V+    A++ D      K       ++ DP  GTG  L   ++ +      H  
Sbjct: 96  MPTP-PVLATVVAMVWD------KLITKTELSVVDPAIGTGSLLYTVIDQLVQS---HHS 145

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G + +     +   G  +   + D     S           + +  ++    +
Sbjct: 146 QNQYRLAGIDNDESMLDLADVGAHLNNYKIDLYCQDSL----------ENWLIEKPDVIV 195

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           S+ P G         ++K  KN           +  +G  L    L  +        G A
Sbjct: 196 SDLPVGYY------PIDKNAKN--------FATQAKEGHSLAHELLVEQTIKNLAPAGYA 241

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +++ +S L     G   +E   WL +   ++A+V LP DLF        L +  N    
Sbjct: 242 FLLVPNSLL----GGKLGAEFMPWLAKKVYLQAVVQLPNDLFQNPLNQKSLLVFQNHGEN 297

Query: 417 ERRGKVQL 424
            +   V L
Sbjct: 298 AQSRDVLL 305


>gi|188528143|ref|YP_001910830.1| hypothetical protein HPSH_07010 [Helicobacter pylori Shi470]
 gi|188144383|gb|ACD48800.1| hypothetical protein HPSH_07010 [Helicobacter pylori Shi470]
          Length = 1078

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRENKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|116688241|ref|YP_833864.1| N-6 DNA methylase [Burkholderia cenocepacia HI2424]
 gi|116646330|gb|ABK06971.1| N-6 DNA methylase [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 76/256 (29%), Gaps = 42/256 (16%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAED----FMTPRDVVHLATALLLDPDDALFKESPGMI 206
              ++  IY  L   +     E        F TP  +      LL   DD         +
Sbjct: 72  KKDLLEAIY-WLSSAYAQLAGEERRKQLAMFFTPPSLTK---RLL---DDLSASGVDFSV 124

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAG- 258
           R   DP CG   FL      + D           +         G + +    A+C    
Sbjct: 125 RKFCDPACGGAAFLAPIAMRMRDALRERGTSATQILDHVQRHLLGFDKD---AALCEMSK 181

Query: 259 ----MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               M++              I QG +L +           + NPPF K    +     +
Sbjct: 182 HFLLMVLHDEVVATGARPKFQIHQGDSLIRAQSLLGALDVVVCNPPFRKMPSAEVAHYLE 241

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                    F   +    +   LF+      L      GG  A+V  +S L    +G   
Sbjct: 242 H--------FADIIEAQPNLYALFMALCVKLL----APGGTCALVTPTSFL----SGQYF 285

Query: 375 SEIRRWLLENDLIEAI 390
           S++R +LL    + +I
Sbjct: 286 SKLRTFLLTQANVLSI 301


>gi|290580595|ref|YP_003484987.1| restriction-modification system LlaBIII [Streptococcus mutans NN2025]
 gi|254997494|dbj|BAH88095.1| restriction-modification system LlaBIII [Streptococcus mutans NN2025]
          Length = 1564

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 68/474 (14%), Positives = 132/474 (27%), Gaps = 76/474 (16%)

Query: 40   LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
              + L         ++ EK      S   +   +  A +  Y       S +        
Sbjct: 734  FDKFLSSLQHNINESIDEKQAIEMLSQHLITLPIFDALFEDY-------SFIKHNPVSQA 786

Query: 100  LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +E  I  FS   +  FE           E   L      N             +++  +Y
Sbjct: 787  MEKIIEEFS---QYGFEKEQ-RELQPFYESVRLRASGIDN--------AQAKQKIIVTLY 834

Query: 160  EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
            +   +      +E      TP +VV      + +       K        + DP  GTG 
Sbjct: 835  DKFFQTGFKSTTERLGIVFTPVEVVDFIVRSVDVVLRKHFGKTLASENVHILDPFTGTGT 894

Query: 219  FLTDAMNHVADCGSHHKI--PPILVPHGQELEPE-----THAVCVAGM------LIRRLE 265
            F+T  ++++ +     +I    IL  + QEL        ++ +    +      +     
Sbjct: 895  FITRTLHYLKELMDKGEITYADILRNYTQELHANEIVLLSYYIAAINIEAVFDEINGDEG 954

Query: 266  SDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWEKDKD 310
              P + +       ST S+D      F                  + NPP+  K   + D
Sbjct: 955  YQPFKGIVLTDTFESTESEDTLDDSFFETNDKRLKRQQEKTITVIMGNPPYSAKQNNEDD 1014

Query: 311  AVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLANKLELPPNGGGRAAIVLS---- 361
               +               + S     +G +   +             G  A + +    
Sbjct: 1015 NTNRNEYLKLDSNIRRKWIETSSATNKNGLLDSYIRALRWSIDRLEKDGVVAFITNSSFI 1074

Query: 362  SSPLFNGRAGSGESE------------IRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
                 +G   S E E            IRR       +E       ++F   T +A  + 
Sbjct: 1075 DGVAMDGLRASLEEEIDYIYLVDLKGQIRRRSKAQAKVEG-----GNIFDIMTGVAITIL 1129

Query: 409  ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            +     +   +GK++  N  D  T      +   + +        +I  +++  
Sbjct: 1130 V-KKGDSNLTKGKIKYFNIGDFLTKKEKLTRLSNLTSIQSIHNFTEITPNQKKD 1182


>gi|319408697|emb|CBI82352.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 1661

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/467 (12%), Positives = 136/467 (29%), Gaps = 71/467 (15%)

Query: 43   RLECALEPTRSAVREKYLAFG-------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
            RL   L    + VR+ +  F           I  +  +++          + +   G   
Sbjct: 745  RLTGILAEPDTEVRQAFDKFLTELRNDLNDAITEDDAIEMLAQHVITRPVFEVLFEGYQF 804

Query: 96   TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             R+N        S   + + +  + ++     +     Y   K  +     P      ++
Sbjct: 805  IRDN------PVSRAMQRMLDVLNEANLEKESKDLEKFYDSVKTRASGITDPQAKQSLIL 858

Query: 156  SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTC 214
              +Y+   R       E      TP +VV      + +     F ++       + DP  
Sbjct: 859  -ELYDKFFRYAFPRTVEKLGIVYTPVEVVDFIINSVNEVLQTEFGQTLGSPDVHIVDPFT 917

Query: 215  GTGGFLT----------DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG------ 258
            GTG F+T          + M H      H     +L  +   +  ET    + G      
Sbjct: 918  GTGTFITRLLQSGLIKQEEMEHKFRHEIHANEIVLLAYYIAAINIETTYHGIMGGDYVPF 977

Query: 259  ----------MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                      +   + E +  +DL  ++ + ++  +           + NPP+    + +
Sbjct: 978  KKICLTDTFQLYEHKHEQEQGKDLFSDLMKDNSTRRSHQQNLNIRVIVGNPPYSVGQKSE 1037

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSS 363
             D  +    +    R        S G+++  ++                 G    + ++ 
Sbjct: 1038 NDNAKNISYSKLDRRIHETYIAQSKGNLIRSLYDSYIRAIRWASDRIKDCGVIGFITNAG 1097

Query: 364  PLFNGRAGSGES----------------EIRRWLLENDLIEAIVALPTDLFFR---TNIA 404
             +                          +IR+ +L             ++F     T IA
Sbjct: 1098 FINTRSMDGLRKCLNEEFSNIYVLNLRGDIRKNMLSKGR----AQEGQNVFGSGSMTGIA 1153

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
              + I       ++RGK+   +  +  T      + +R+ +    ++
Sbjct: 1154 ISILI--KNPAAQQRGKIYYYDIGNNLTRKEKLSELQRLGSVGGIKR 1198


>gi|119486016|ref|ZP_01620078.1| hypothetical protein L8106_05830 [Lyngbya sp. PCC 8106]
 gi|119456791|gb|EAW37919.1| hypothetical protein L8106_05830 [Lyngbya sp. PCC 8106]
          Length = 759

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 68/217 (31%), Gaps = 25/217 (11%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KES 202
            +       + +  +YE+  + +  + ++      TP ++V L            F K  
Sbjct: 8   NIANHHEKQKFLKAVYENFYKAYNPKAADRLGIVYTPNEIVRLMIESADYLVHKHFGKLL 67

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + DP  GTG ++T+ + ++      HK    +  H  E+    + +    +   
Sbjct: 68  SDPGVEILDPCTGTGTYVTELIEYLPADKLEHKYKHEI--HCNEVAILPYYIANLNIEFT 125

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------------YCLSNPPF 301
             +   + +  +NI    TL    F GK+ +                       + NPP+
Sbjct: 126 YQQKMGKYEEFQNICLVDTLDHCGFAGKQLNLFAMSVQNTARIKEQNSRTISVIIGNPPY 185

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              W+ D        +  ++ R           +   
Sbjct: 186 NA-WQADFRQDNPNRQYKDVDRRIKATYIKKGTAQNQ 221


>gi|260576736|ref|ZP_05844722.1| N-6 DNA methylase [Rhodobacter sp. SW2]
 gi|259021103|gb|EEW24413.1| N-6 DNA methylase [Rhodobacter sp. SW2]
          Length = 1032

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 88/287 (30%), Gaps = 45/287 (15%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P  ++S +Y+  +          +  + TP          ++     +  ++       
Sbjct: 299 IPIELVSAVYDRFLGE-REAERRASGAYYTP----MFLADTVVSQAWEMLPDATRTTGNF 353

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCVAGM 259
            DP CG+G FL  +   + +          L            HG +L      V V  +
Sbjct: 354 LDPACGSGVFLVRSFQRLCEHWRAKHNTQTLSWKTLLSLLSQIHGWDLNGGAVRVAVFSL 413

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL-------------FTGKRFHYCLSNPPFGKKWE 306
            +  LE    RD+ K I +G  L +                 G R+   + NPP+  +  
Sbjct: 414 YVALLEEVSPRDIRKLITRGKLLPELWGKTLVCRDFFEVPPDGARYEVIIGNPPWTSRRG 473

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPL 365
             + +V          +         + +  F     + L      GG  A +L     L
Sbjct: 474 PARSSV-------RWSKNAGHPMPGGEDAWAFSWKALSHL----ADGGLIAFLLPAMGFL 522

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWI 409
            N    + E+  R        +  ++    L   LF + +    L I
Sbjct: 523 HNHAQKTVEA--RDAFFRKSRVRRVINFADLRFQLFEKAHRPAALII 567


>gi|301163032|emb|CBW22580.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 1911

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 53/278 (19%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LH     +R    + E       S  +     F TP  +V+   + L +   +       
Sbjct: 80  LHDGAADEREYKRLVE-------SVKASTFTAFYTPPAIVNAIASSLGEHGVSPG----- 127

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 DP+ GTG F++           +    P +V +  E +  T  +      + RL
Sbjct: 128 ---RFLDPSSGTGNFVSAFQPQFHSAAGNG---PEIVAY--EKDLLTGRI------LARL 173

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             + + ++    +              F    SN PFG     D    +    NG   RF
Sbjct: 174 HPEAQVNIKGFEELPP------HRNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRF 222

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                           +   K       GG  A + S   + +  A      +R++L+  
Sbjct: 223 ALNSLHN---------YFFAKGLDAVREGGILAFITSQGVMNSAMAYP----VRQYLMNQ 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERR 419
             + + V LP +LF     T + + L IL      +R 
Sbjct: 270 SRLLSAVRLPNNLFTDYAGTEVGSDLVILQKDTLSQRE 307


>gi|303256816|ref|ZP_07342830.1| helicase domain protein [Burkholderiales bacterium 1_1_47]
 gi|302860307|gb|EFL83384.1| helicase domain protein [Burkholderiales bacterium 1_1_47]
          Length = 1579

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 109/372 (29%), Gaps = 51/372 (13%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCG 215
             +++   +    E+ +      TP  VV      + D                + DP  G
Sbjct: 806  ELFDKFFKFAFPEMRDKLGIIYTPVPVVDFINHSVADILQKEFGTTIASPNVHILDPFTG 865

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPR 269
            TG FLT  M                  H  E+ P T+ +    +      L+   E +P 
Sbjct: 866  TGTFLTRLMQSGLIPADKLSEKFKNDIHAHEILPLTYYIASINLEATYYDLVSNQEYEPN 925

Query: 270  RDLSKNIQQGSTLSKDLF--------------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              +          +K LF                      + NPP+    E+  D  E E
Sbjct: 926  PVMIWTDTFADHDAKTLFSTSLAENNARLAKTEELDIRVIVGNPPYSVGQERQADNNENE 985

Query: 316  HKNGELGRF-----GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              +    R      G     + +      +             G    V ++  + +  A
Sbjct: 986  RYDKLDSRISKTYAGRTDVTLKNSLYDSYIRAYRWASDRIKDKGVIGFVTNAGWIESNSA 1045

Query: 371  GSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKT 415
                  +R+ + E      I  L  +              +F   +     + +L     
Sbjct: 1046 DG----MRKCMSEEFNSIYIYHLKGNQRTSGERSRKEGGKVFGEGSRAPVAIVLLVKNPD 1101

Query: 416  EERRGKVQL--INATDLWTSIRNEGKKRRIINDDQRRQIL----DIYVSRENGKFSRMLD 469
            ++ +GK+    ++         N+  K + I++ Q ++I       ++++ +  F+  + 
Sbjct: 1102 DKEKGKIYFHAVDDYLTREEKLNQLVKAKSISNIQWQRIYPDKHGDWLNQRDDSFAHFIK 1161

Query: 470  YRTFGYRRIKVL 481
                 +++ K  
Sbjct: 1162 IDATKFKKQKTE 1173


>gi|315586042|gb|ADU40423.1| probable adenine specific DNA methyltransferase [Helicobacter
           pylori 35A]
          Length = 842

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 172 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 229

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 230 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSIIKDLNDD 289

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 290 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 349

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 350 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 409

Query: 254 VCVAGM 259
           +    +
Sbjct: 410 IAHLNL 415


>gi|254500027|ref|ZP_05112180.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222441494|gb|EEE48171.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 1702

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 65/260 (25%), Gaps = 58/260 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  +V               +        + +P  GTG F     
Sbjct: 160 DYASLARCTQYAHFTPEFIVRAM--------WKGLERLGWRGGRVLEPGIGTGLFPALMP 211

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              G EL+P T  +                     I +G     
Sbjct: 212 EAFRET---------SFVTGVELDPVTSRIARL------------LQPVSRIVEGDFART 250

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL     F   + NPPF  +  +   A                             +   
Sbjct: 251 DLPA--HFDLVIGNPPFSDRTVRSDRAYRSMGLRLHD-------------------YFIA 289

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           +       G  AA V SS  +    A +     R  +  +  + A + LP   F     T
Sbjct: 290 RSIDLLKPGALAAFVTSSGTMDKADATA-----REHIARSADLIAAIRLPEGSFRQDAGT 344

Query: 402 NIATYLWILSNRKTEERRGK 421
           ++   +     RK  E  G+
Sbjct: 345 DVVVDILFFRKRKPGEPEGE 364


>gi|332829925|gb|EGK02553.1| hypothetical protein HMPREF9455_00803 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1888

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 142/451 (31%), Gaps = 68/451 (15%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ ++                 S    +   +P+ G G F+      V D       
Sbjct: 105 FYTPKPIIDALA--------LALNNSGIKPQRFLEPSAGAGAFIASFKETVPDAE----- 151

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E +  T      G ++  L  + +  +    +       +    + +    
Sbjct: 152 -----VTGFEKDLLT------GKILSHLHPEDKIRIEGYEKM------EGRYAQHYDVIA 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E            +P +S  +     +   K  +    GG  
Sbjct: 195 SNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFFTKSVMAAREGGLI 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IR +L+    + + + LP +LF     T + + L IL  +
Sbjct: 243 AFITSQGVLNSEQN----KPIREYLMNTCQVVSAIRLPNNLFTEEAGTEVGSDLIILQRK 298

Query: 414 K----TEERRGKVQLINATDL--WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                  +R+     I +  L    S+ N  K    +     +   D Y  +   +F+  
Sbjct: 299 NANILPTQRQQD--FIESRKLSNGISVNNLFKDFDRVIQTDVKVGTDPYG-KPAMEFTHT 355

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLDILKPMMQQI 526
                      ++L       +  +  L+        + + +P+ +    D+++   +  
Sbjct: 356 GGTEAIAATLYRMLNEDFSKHLDLEHYLSHAPQKQEQQPIVAPIQEISVSDMVELSSKSA 415

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA-FGRKDPRADPV---TDVNGEWI 582
           Y     +  +         +    + S+  I   + +   +   +A  V    +     I
Sbjct: 416 YEPIEEDLVLFHPFAEARNRKAWTELSEQEIKEVMESRINQPKEQAKNVPTTAEKKDTII 475

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
            D     + N+   E I+    +EVSP  PD
Sbjct: 476 KDEASGLFVNINTGEVIE---QKEVSP--PD 501


>gi|325298274|ref|YP_004258191.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
 gi|324317827|gb|ADY35718.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
          Length = 234

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 29/190 (15%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDR 153
            + L   I  FS  A          S   + ++      + + +  +    L  D     
Sbjct: 33  NDFLTFVIHGFSPGAPP------LKSWKYKRQQNAAFMGMVREWVRLMQSRLKEDDSWYD 86

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              +IY        +   +    F TP  +  L TA                 + + DPT
Sbjct: 87  PFGDIYMAF---SSAGSKQAQGQFFTPAPICELMTA-------CAGTGEHQPGQRMGDPT 136

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L     HV + G +          G+++      + V  ML+     +     S
Sbjct: 137 CGSGRLLLAW--HVRNLGGY--------LVGEDINRTCCLMTVCNMLVHGGVGEVIWHDS 186

Query: 274 KNIQQGSTLS 283
              ++ +   
Sbjct: 187 LQPEKFNDGW 196


>gi|315930741|gb|EFV09751.1| type I restriction modification DNA specificity domain protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 782

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 101/309 (32%), Gaps = 22/309 (7%)

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           K       F   ++NPP+  K          +        F   +   ++ S+       
Sbjct: 32  KPQIESNSFDLLIANPPYSVKG---FLETLSDKSKNTYKLFNDDINIETNNSIECF--FC 86

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            +     N   +AAI+L SS L      S     R  L +N    AIV L    F  T  
Sbjct: 87  ERANQILNDNAKAAIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGT 143

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR------NEGKKRRIIND--DQRRQILDI 455
            T +  L  ++T ++   +   + + +   I       NE   +  ++   D R+   ++
Sbjct: 144 NTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESFYQNYLSAYCDFRKFDKEL 203

Query: 456 YVSRENGKF-SRMLDYRTF-----GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           Y +  NG   S++ +   F      +R+    + L+ S I  ++   +   D  +   + 
Sbjct: 204 YSNFLNGNLDSKLTELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQ 263

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
             +   L      + Q      + S +KE  K    +    K  +               
Sbjct: 264 AIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFE 323

Query: 570 RADPVTDVN 578
           R +P  +  
Sbjct: 324 RGNPQNETK 332


>gi|170022327|ref|YP_001718832.1| N4/N6-methyltransferase family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169748861|gb|ACA66379.1| N4/N6-methyltransferase family protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 255

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 57/216 (26%), Gaps = 48/216 (22%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---------------- 56
           N  WK  + L  D    ++  +I    L + +  A E ++  +                 
Sbjct: 14  NKFWKTTDKLRADIDIANYNNLIFGLILPKNISNAFEISQKELTTLFCEIKNPDEICAIS 73

Query: 57  -EKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLGSTNT-------------- 96
            E Y         ++  + V  +      F+           +                 
Sbjct: 74  HEDYEPNEDDTQAIQEELIVEDHYIEKNIFWMPKAARWDIRKNKAIPQIGTALWVNTATE 133

Query: 97  -----------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                       N+    I   +   K+ F          ++    +      NF+  E 
Sbjct: 134 QGVKLRSASWLGNSPLDEIEKTNTKLKSSFNHISQYRVGNKVLTTLINAVSDINFNNPE- 192

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + +     +   +YE+ + +F  +  +      TP+
Sbjct: 193 YNNLKSKGIYGYVYEYFLNQFAFDEEKQGGQCYTPK 228


>gi|319744479|gb|EFV96836.1| SNF2 family protein [Streptococcus agalactiae ATCC 13813]
          Length = 1998

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 72/432 (16%), Positives = 120/432 (27%), Gaps = 88/432 (20%)

Query: 20  EDLWGDFKHTDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVA 76
            +L       DF  VI   P   LR LE   +       E+       + +L+ F     
Sbjct: 483 NNLIRIELQNDFTDVIEQNPVLFLRTLEDITQALHVPSVEEKEEVEEPSQELDLFSFMDM 542

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLEKAG 131
                  S+  + T  S+N R   +    S  +    + E     DF F   +       
Sbjct: 543 EEQNEPVSQ--VITSLSSNKREAKQEEALSEDELEPEVTETPPATDFHFPEDLTDFYPKT 600

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTPR------D 182
              K+  N + + L      +   +   E  L+ ++        E F    P+      +
Sbjct: 601 TRDKVETNVAAVRLVKSLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREE 660

Query: 183 VVHLATA------------------LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +  L T                   LL+       +        + DP+ GTG F     
Sbjct: 661 LKTLVTEKEYSDMKQSSLTAYYTDPLLIREMWNKLERDGFTGGKILDPSMGTGNFFAAMP 720

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            H+ +             +G EL+  T  +         L  +   ++            
Sbjct: 721 KHLRENSE---------LYGVELDTITGVIAK------HLHPNSHIEVKG-------FET 758

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F    F   LSN PF      D              R+        D   +   +   
Sbjct: 759 IAFNDNSFDLVLSNVPFANIRIAD-------------NRY--------DKPYMIHDYFVK 797

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K     + GG+ AI+ S+  +           I + + E       V LP   F     T
Sbjct: 798 KSLDLVHDGGQVAIISSTGTMDKRTEN-----ILQDIRETTDFLGGVRLPDTAFKIIAGT 852

Query: 402 NIATYLWILSNR 413
           N+ T +      
Sbjct: 853 NVTTDMLFFQKH 864


>gi|255008728|ref|ZP_05280854.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146464|ref|ZP_07808657.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135231|gb|EFR52591.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1911

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 53/278 (19%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LH     +R    + E       S  +     F TP  +V+   + L +   +       
Sbjct: 80  LHDGAADEREYKRLVE-------SVKASTFTAFYTPPAIVNAIASSLGEHGVSPG----- 127

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 DP+ GTG F++           +    P +V +  E +  T  +      + RL
Sbjct: 128 ---RFLDPSSGTGNFVSAFQPQFHSAAGNG---PEIVAY--EKDLLTGRI------LARL 173

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             + + ++    +              F    SN PFG     D    +    NG   RF
Sbjct: 174 HPEAQVNIKGFEELPP------HRNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRF 222

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                           +   K       GG  A + S   + +  A      +R++L+  
Sbjct: 223 ALNSLHN---------YFFAKGLDAVREGGILAFITSQGVMNSAMAYP----VRQYLMNQ 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERR 419
             + + V LP +LF     T + + L IL      +R 
Sbjct: 270 SRLLSAVRLPNNLFTDYAGTEVGSDLVILQKDTLSQRE 307


>gi|57865887|ref|YP_190007.1| hypothetical protein SERP2464 [Staphylococcus epidermidis RP62A]
 gi|57636545|gb|AAW53333.1| conserved domain protein [Staphylococcus epidermidis RP62A]
          Length = 48

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 6/43 (13%), Positives = 15/43 (34%)

Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
              +W+  + L G+    ++  + L    L+ +    E    
Sbjct: 6  FEEKLWQADDKLRGNMDADEYKNIALGLIFLKYISDCFEEKYE 48


>gi|217034431|ref|ZP_03439844.1| hypothetical protein HP9810_11g13 [Helicobacter pylori 98-10]
 gi|216943101|gb|EEC22575.1| hypothetical protein HP9810_11g13 [Helicobacter pylori 98-10]
          Length = 839

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 88/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ +    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRKSKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|166364661|ref|YP_001656934.1| hypothetical protein MAE_19200 [Microcystis aeruginosa NIES-843]
 gi|166087034|dbj|BAG01742.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 1099

 Score = 54.8 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/423 (15%), Positives = 130/423 (30%), Gaps = 79/423 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             +R LE          +E + A   +N   ++ +          +E     +   + ++
Sbjct: 201 IFIRYLEDR----GILTQEYFEAIAQNNATWKALLNAPDDQLNMETEAKQHYIKILSDKS 256

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP----------- 147
              +     S +      D   S              + + F   ++ P           
Sbjct: 257 FTYALFNRLSQDFNG---DMFPSDEQEAESVEQRHLSLLQEFLQGDIDPQKKLFFWAYKF 313

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +P  ++S+IYE       +  +       TP  +V    + +L  D            
Sbjct: 314 DIIPISLISSIYEEFYHE-SNTENIDNGTHYTPSSLVEFVLSKVLTSDCLTTHP------ 366

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCV 256
            + DP CG+G FL +A   +     +      L              G E+  E   +  
Sbjct: 367 RILDPCCGSGIFLVEAFRRIVRHRVYQNQRQRLSWQELREILKNQIAGIEINSEAIRITA 426

Query: 257 AGMLIRRLESDPRRDL------------------------------SKNIQQGSTLSKDL 286
             + +  L      D+                                N  Q  + S+D+
Sbjct: 427 FSLYLALLNYQEPPDILLQIKRGEKLPFLIYQANGLSEDNHFNNLVCDNAFQEFSNSEDV 486

Query: 287 FTGKRF-----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              + F        + NPP+G    KDK   +  +   +  +         + S  F+  
Sbjct: 487 ILSRNFSSQCADVVVGNPPWGSPKTKDKKGTKDLNIALQWCQERDYPVGDKERSQAFIWR 546

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFF 399
           + + L+      G +A+V+S+   F     S E   R+  L + L++ +V      D+FF
Sbjct: 547 VFDFLK----DNGWSALVVSTGIFFKTHDKSKE--FRQKWLNSVLLKEVVNFAHVRDIFF 600

Query: 400 RTN 402
           ++ 
Sbjct: 601 KSG 603


>gi|307244222|ref|ZP_07526337.1| conserved domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492372|gb|EFM64410.1| conserved domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 67

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
              I +        V+  IYE+LI +F +   + A +F TP +V  L + ++ +      
Sbjct: 2   IKDIPMDGKQ-DYDVLGFIYEYLISQFAANAGKKAGEFYTPHEVSVLMSEIVAEHLKGKK 60

Query: 200 KESPGMI 206
           +     +
Sbjct: 61  EIKIYEM 67


>gi|57241972|ref|ZP_00369912.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           RM3195]
 gi|57017164|gb|EAL53945.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           RM3195]
          Length = 1034

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 101/320 (31%), Gaps = 24/320 (7%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGY--------SFYNTSEYSLSTLGSTNTRNN 99
                   ++ + +     +  E F  +           S+    +Y L  +   N  + 
Sbjct: 196 FNNFFQRTKDTFKSIEKIELKDEEFCDILAQAVVYGIFVSYIENDDYDLEKIPIENFISF 255

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           L S   + S+        F     I    +         +   +    +   + +   +Y
Sbjct: 256 LPSTFRTLSEFVYFSVPSFSLPQDIKYTLENIKKTLALIDKVELCNILNQDLESISIYLY 315

Query: 160 EHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--LYDPT 213
           E  ++ F     ++  +    F TP+ VV +  + L +   + F ++    ++  + D  
Sbjct: 316 EDFLKAFDELRATQKRKEGGVFYTPKSVVKMIVSSLDELLKSKFNKTGFNDKSVKVLDFA 375

Query: 214 CGTGGFLTDAMNHVADCGSH------HKIPPILVPHGQELEPETHAVCVAGM--LIRRLE 265
            GTG FL      +    S        K   +   +G EL    + V    +  ++R+  
Sbjct: 376 TGTGSFLAAVFEKIISKESEVFKNETIKNKFLKDIYGFELSFVPYIVARLKLGQILRKSG 435

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +    I   +TL  DL     F   +      ++W+K KD    ++    LG   
Sbjct: 436 FKDFSEADFQIYLNNTL--DLEKNANFDMFMPLVNLNQEWQKAKDVKHDKNLLVILGNPP 493

Query: 326 PGLPKISDGSMLFLMHLANK 345
                 + G  +  +    K
Sbjct: 494 YNAKSKNKGKEILELLKIYK 513


>gi|400288|sp|Q03055|MTV1_VIBS3 RecName: Full=Modification methylase VspI; Short=M.VspI; AltName:
           Full=Adenine-specific methyltransferase VspI
 gi|48457|emb|CAA48625.1| methylase [Vibrio sp.]
          Length = 408

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 28/195 (14%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +    +  K    +   +      +  + V    +S+IYE  +             F 
Sbjct: 65  KLNQRANKSLKDQHDHSGLEEMIHNIIRSNEVHPEGLSDIYEESLS---ESYKNKEGVFY 121

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+++         D  D L K+   +  T  DP CGTG FL +A+          +   
Sbjct: 122 TPKEIA-------ADFFDYLPKDCSEL--TFCDPCCGTGNFLIEAVK---------RGFK 163

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +G +++     +  + +       +       NI++   LS      +++    +N
Sbjct: 164 PCNIYGYDIDEVALEISRSRL------KELCGVAESNIEKRDFLSASYQIEQKYDVIFTN 217

Query: 299 PPFGKK-WEKDKDAV 312
           PP+GKK  +KDKD++
Sbjct: 218 PPWGKKLPKKDKDSL 232


>gi|328952619|ref|YP_004369953.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452943|gb|AEB08772.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1174

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 94/256 (36%), Gaps = 22/256 (8%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKA 130
           F +    S  +  +  L  + ++     L + +  + + +  A+FE+ D    +    +A
Sbjct: 243 FYQSLRRSARHLPKLELDRVDTSQVLPTLRAAFTQALAIDYHAVFEE-DVPDRLQWPSQA 301

Query: 131 GL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            L L K+  +F+  +     +P  V+ N++E LI     E   G   + T  ++     A
Sbjct: 302 SLELAKLIGDFNTRDF--AHLPQDVVGNVFERLIP---PEERHGLGQYFTSENLCDFIAA 356

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
             +               T+ DP+CGTG FL  A + +   G H     +    G ++ P
Sbjct: 357 FCI----------RSPHDTVLDPSCGTGTFLIRAYDRLRWLGRHDHTKLLSQIWGVDIGP 406

Query: 250 ETHAVCVAGMLIRRL--ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
               +    +  +R+    +  R + ++  + +      F   +    L NP   ++   
Sbjct: 407 FPAELATINLFRQRISEHGNFPRIICQDFFRITPGECFPFPPPKMD--LDNPQTIEEPFP 464

Query: 308 DKDAVEKEHKNGELGR 323
             +A+          R
Sbjct: 465 QFEAIIGNFPYVSADR 480


>gi|85713748|ref|ZP_01044738.1| putative methylase [Nitrobacter sp. Nb-311A]
 gi|85699652|gb|EAQ37519.1| putative methylase [Nitrobacter sp. Nb-311A]
          Length = 507

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 91/272 (33%), Gaps = 35/272 (12%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +Y  ++    ++V      + TP  V      L ++    L          + DP  
Sbjct: 40  IGTLYTLMLP---TKVRRSQATYFTPPGVADAVVELAIEAGFDL------AGDDVLDPAA 90

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G   FL+     +A  G           +G E++     +    ++  RL +   RD+  
Sbjct: 91  GGAAFLSTIAGRMAAVGLAAN-EVAFRLNGIEIDAGLATLSR-HLIADRLGAALPRDVVI 148

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
               G  L   +     +   ++NPP+G+       +++  H  GE  R       I+  
Sbjct: 149 I---GDALRVQIPAS--YGLVIANPPYGRM------SIDDVH--GEAWRRVAHTGHINKY 195

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI--VA 392
           ++      A         GG  A+V+ SS     RAG     +R+++     +  I  +A
Sbjct: 196 AL-----FAELCFRNAKPGGVVALVIPSSF----RAGPLYGRMRKFIRSQGEVLTIGSIA 246

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
               +F        + I    K       V+ 
Sbjct: 247 DRDGIFLDVAQDISVLIARKGKPHRAEAMVRF 278


>gi|330825340|ref|YP_004388643.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|329310712|gb|AEB85127.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 995

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 43/280 (15%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L    +P  V+S +YEH   R+    ++      TPR +      L++D       +   
Sbjct: 284 LRFQHIPVDVLSQVYEHFAHRYMPAKAKKTSIHYTPRAI----AELVVDGVFGATAQEKR 339

Query: 205 MIRTLYDPTCGTGGFLTDAMNH-VADCGSHHKIPP---------ILVPHGQELEPETHAV 254
              T+ DP  G G FL  +    VA+   H    P              G ++ P +  V
Sbjct: 340 HEVTVLDPAVGAGVFLVLSFRRLVAETWMHTGSRPKRGTIRAILTKQLCGLDINPISIKV 399

Query: 255 C-----------------VAGMLIRRLESDPRRDLSKNIQQGS------TLSKDLFTGKR 291
                             ++ +   RL     R + +    G+      +LS  L +   
Sbjct: 400 AALSLYLAALELDPEPQPLSDLRFERLFDKTLRCVDEKYLNGAKDAELGSLSMQLRSMGP 459

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPP+ +   + K  +++     +  +   G   +       L  +    +    
Sbjct: 460 YDIVLANPPWTRLPGRLKKDLDRTAYAAD-EKAPQGAKSLVPNQWPDLAFMWRSTQWCKP 518

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            GG   +++ +  LF+          RR       +  I+
Sbjct: 519 -GGVIGLLVHARLLFSSETAQA----RRHWFSMTRVTGIL 553


>gi|317476133|ref|ZP_07935385.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907771|gb|EFV29473.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1658

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 104/336 (30%), Gaps = 62/336 (18%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N   +L + + + +   K   +D   +     +      +   K+   I     TV + V
Sbjct: 4   NKLKSLVANVEAIATAMKIRIDDRQATDQEKEVLSRYSGFGGIKDVLSIG-TEHTVSNDV 62

Query: 155 MSNI------------YEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             +I            Y+  +R+    S  S     F TP          +     A F 
Sbjct: 63  AEHIHRLQDLIEAYPYYDDAMRQAVIDSIKSSVLTAFYTP----KFLIDAVARQIHATFM 118

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           ++   +RT  +P+ G GGFL  AM             P    +  E +      C+ G++
Sbjct: 119 DNGLQMRTFLEPSAGIGGFLPVAM-------------PDTRGYAFEKD------CLTGLI 159

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  L        +       T++        F    SN PFG              +  +
Sbjct: 160 LSLLHDKTTTVTAGFE----TIADQHLEHGSFDVIASNIPFG------------NFRVFD 203

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              +  G         +        +EL  N GG  A V             G   +R +
Sbjct: 204 AEMWKKGGMYEQSAKTIHNYFFVKAMELL-NEGGLLAFVAPRGI----ADTPGNKFVREY 258

Query: 381 LLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           L+ +  +   + LP  LF +T+   + + L I    
Sbjct: 259 LVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQKH 294


>gi|258648838|ref|ZP_05736307.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260850951|gb|EEX70820.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2321

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 131/426 (30%), Gaps = 75/426 (17%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVSAISDALVSTNLQVRRCLDPSAGMGAF---AETFARQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGKGNIFVHNEPFEAIGELEDKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  +            GG  A + S   L + R 
Sbjct: 207 VYDREYNRGKDTLKRESTRTIHNYFFVKGLDCIK-------EGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINA 427
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  + ++E          
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTSKE---------- 305

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--------DYRTFGYRRIK 479
                           I++D  +Q ++     +    S +         D++   +R + 
Sbjct: 306 ----------------ISEDIEQQFVETVSVPKEEGSSVVFKQNSLFVGDWKDISHRTVA 349

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG-WAESFVKE 538
             R +            R    I       L     L++ + + +++Y  G        +
Sbjct: 350 TERIMGTDPYGRPAWEYRFTGGIE-EMAESLRTQLSLEMGQRIDRKLYETGIPMTKEEWQ 408

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA-DPVTDVNGEWIPDTNLTEYENVPYLE 597
              +   + L V          +      D  A + + D   + +P    TE E +    
Sbjct: 409 VRVNEILQKLGVTVQAEGKPQMLGTKEEDDTGAHNLMPDSIRKQLPKLYSTEKELIGDKV 468

Query: 598 SIQDYF 603
           +   YF
Sbjct: 469 AYARYF 474


>gi|170289995|ref|YP_001736811.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174075|gb|ACB07128.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 651

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 87/277 (31%), Gaps = 43/277 (15%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            +  D +     L +A  +    K+F                   E + R    E  +  
Sbjct: 49  VDKLDLNEIKLLLSEAERIKLSVKDFQ------------------EKVQRMIPRERRKRF 90

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + T R V  L   L  D  D+           + DP  G+G  LT A++ +       
Sbjct: 91  AAYYTIRQVAELMVKLARDLHDSESL-------IIADPFLGSGITLTAAIDKI------- 136

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
               IL   G EL P    +  A +L        RR+    I   S          +   
Sbjct: 137 GPERILKVWGIELLPLPALIAYASLL---QSMKGRREAIDVIVGDSFREVPSRDLPKADI 193

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF +   K  +   +E     +   G G     + S+  L       +     GG
Sbjct: 194 ILTNPPFTR--WKYLERDYRESLLSLMRELGYGKYMRGESSLQVLSMFLC--DRALRRGG 249

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               VL +S  +       +S +R    E   + AIV
Sbjct: 250 LLVSVLPASTFYTIYGRGYKSFLR----EEYCLHAIV 282


>gi|296127792|ref|YP_003635044.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
 gi|296019608|gb|ADG72845.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
          Length = 405

 Score = 54.8 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 94/280 (33%), Gaps = 49/280 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++    E  +    + TP+ +  L    L+   D            + DP CG+G F+  
Sbjct: 13  LKNTDIEKRKRLGQYFTPKSIRELLLKKLISISDKKDNV------KILDPACGSGEFILS 66

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +  +             +G E++    ++              +   + +I+   TL
Sbjct: 67  FKEYFNNPH----------LYGFEIDESLVSISK------------KLINNADIKCIDTL 104

Query: 283 SKDLFTGKRFHYCLSNPP-FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             D+    ++ Y + NPP F  K +K+      +  +G +  F                 
Sbjct: 105 KIDIEKSIKYDYVIGNPPYFEFKPDKETKKKYSDIISGRVNIF---------------SI 149

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400
                      GG  A V+  S       G+  S++R +++ N  +E + +   +D F+ 
Sbjct: 150 FIKLGLELLEDGGYLAYVVPPSM----NNGAFFSKLREYIINNSSVEYLHIVEGSDNFYM 205

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            N    L IL    + + +  +   N   ++T  +     
Sbjct: 206 ANQKVMLLILKKTNSHKNKKYIFSKNGITIFTEDKTFLNN 245


>gi|154149046|ref|YP_001405769.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
 gi|153805055|gb|ABS52062.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
          Length = 2117

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 77/529 (14%), Positives = 154/529 (29%), Gaps = 53/529 (10%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           K+     + T  +  +     + RN+     +++ +      ++        R  K    
Sbjct: 319 KIQQDGSFQTRRFRENNNNQRDIRNSTLKLTSTYKNEDFIYQDEILIKGKKDRFYKNYEA 378

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEH--LIRRFGSEVSEGAEDFMTPRDVVH---LAT 188
            K+ K  + I+ +     +   +   E   +I +F              ++      L  
Sbjct: 379 IKLTKELTKIK-NVAISNNNFFTITKEEQTIISQFTGWGGVSESFDENNQNFKQENTLLK 437

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----H 243
            LL + +    K       T+ +        +      + + G +       V       
Sbjct: 438 NLLTEEEYKEAK------ETITNAYFTPQILVNTIHKALNEMGINSDNNKKRVLEPSAGS 491

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPP 300
           G  L+P         +    L SD    L  N +  +   +D    +   +F   + NPP
Sbjct: 492 GAFLKPNP-NFEYLTIEKNHLSSDMLSLLFPNQKHYAMGYEDDLANQNITKFDAIIGNPP 550

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG+    DK+   KE                S        H+           G  A V+
Sbjct: 551 FGEIAIIDKNRALKEDIPRMSLHNFFAAKSAS--------HMLK-------DDGIMAFVI 595

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           S+  L +    +     RR++         V LP + F  T+ +T +      K      
Sbjct: 596 STKFLDSKTDTT-----RRYIDNYATFLGAVRLPENTFDSTHSSTDIVFFKKGKDLNLN- 649

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
                   + W ++ N     +IIN+   +   +I  + E    S   +        + +
Sbjct: 650 --------NNWLNVENFKDTNQIINNYFIQNPNNILGNLEIKIRSHGEELVCTKNSNLNL 701

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLS-PLHQSFWLDILKPMMQQIYPYGWAESFVK-- 537
              L          + +   + T       L +    +  K + Q  Y     E ++K  
Sbjct: 702 ENELNRFVETLPKNIYKFHKNETKINDEIYLDEIIDANYYKDLKQNNYFIFNNEIYIKKG 761

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
           E   +N     K +   +      N    +D   + +     +   D N
Sbjct: 762 EINNANGILATKPELKPAQQERVKNFINLRDAHKELIELEKTDISDDNN 810


>gi|227500925|ref|ZP_03930974.1| site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
 gi|227216944|gb|EEI82333.1| site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
          Length = 231

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++      I+   D        +IYE +++   S     + +F T
Sbjct: 114 FEDANNYMKDGVLLRQVINIIDEIDFS-DYEESHAFGDIYESILKELQSAG--SSGEFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR V      ++           P +   + D  CG    +    N   +  S   +P  
Sbjct: 171 PRAVTDFMAMMI----------KPQIGEKMADFACGFRVIIVIEANSYVNTRSSRLLPKF 220

Query: 240 LV 241
             
Sbjct: 221 KT 222


>gi|225407951|ref|ZP_03761140.1| hypothetical protein CLOSTASPAR_05172 [Clostridium asparagiforme DSM
            15981]
 gi|225042522|gb|EEG52768.1| hypothetical protein CLOSTASPAR_05172 [Clostridium asparagiforme DSM
            15981]
          Length = 2122

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 77/289 (26%), Gaps = 72/289 (24%)

Query: 147  PDTVPDRVMSNIYEH-----LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            PD       +   E+     L+    + S  +       T   V      ++        
Sbjct: 822  PDAFDQDKEAWAAEYAELKDLLTPEEYASARASTLNAHYTSPTVARAIYEVV-------- 873

Query: 200  KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC---- 255
                     + +P+CG G F           G   +       +G EL+  +  +     
Sbjct: 874  GNLGFHSGNILEPSCGVGNFF----------GLLPEGMAASKLYGVELDSISGRIAGQLY 923

Query: 256  -VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
              A + +R  E                  K  F    F   + N PFG     D      
Sbjct: 924  PKASIAVRGFE------------------KTNFPDGFFDVAIGNVPFGGYKVVD------ 959

Query: 315  EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                    R+      I D       +   K       GG  A + S+     G     +
Sbjct: 960  -------SRYDKHNFFIHD-------YFLAKAIDKVRPGGVLAFITSNGV-SGGTMDKKD 1004

Query: 375  SEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRG 420
               R +L E   +   + LP + F     T++ T +  L       + G
Sbjct: 1005 RRAREYLAERCDLLGAIRLPNNAFAANAGTDMTTDILFLQKLDAPRQLG 1053


>gi|167760883|ref|ZP_02433010.1| hypothetical protein CLOSCI_03271 [Clostridium scindens ATCC 35704]
 gi|167661486|gb|EDS05616.1| hypothetical protein CLOSCI_03271 [Clostridium scindens ATCC 35704]
          Length = 2488

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 64/240 (26%), Gaps = 59/240 (24%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP  V+      L                T+ +P+CGTG F           G     
Sbjct: 1280 FYTPPVVIKAMYEAL--------DHMGFSGGTILEPSCGTGNFF----------GLIPDR 1321

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  HG E++  T  +               +   K         +       F   +
Sbjct: 1322 MAGSTLHGVEIDSLTGRIAK-------------QLYQKASIAIEGFEQTKLPDDHFDVIV 1368

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG                     F     + +    L   +   K       GG  
Sbjct: 1369 GNVPFGD--------------------FKVNDSRYNAQKFLIHDYFFVKALDKVRSGGVV 1408

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + S   +          E+R+++ +   +   + LP + F     T + + +  L  R
Sbjct: 1409 AFITSKGTMDKTSP-----EVRKYIAQRAELLGAIRLPDNTFRANAGTEVTSDILFLQKR 1463


>gi|37525126|ref|NP_928470.1| hypothetical protein plu1158 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784552|emb|CAE13452.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 657

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 12/220 (5%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           +   +P+   V E  LA      +      +  ++     E                 Y 
Sbjct: 403 DEDNDPSDDNVVELPLAATYREPNPHKQAFIRLFNQIAPHENRWQVFCDFVHMAACSLYN 462

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           A   ++    FE            +           S + +  +      +  ++  L  
Sbjct: 463 ALLQND---EFEADYMQRVKRYSREDAFRLSRL--LSEVIMGLEYEAGDFLGAVFMAL-- 515

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                 ++    + TP  V H+   + L    A          T+ DP CG GG +    
Sbjct: 516 ---ELGNDQVGQYFTPFPVSHMMARMKLAEGLARLGSGEHEYITVSDPDCGAGGMIIAMY 572

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             + + G +      ++    +++P    +    + +  +
Sbjct: 573 QTMLEAGFN--PQQQMLAFCVDIDPVAAMMTYIQLSLLGV 610


>gi|56550614|ref|YP_161680.1| hypothetical protein RMe0058 [Cupriavidus metallidurans CH34]
 gi|94152650|ref|YP_582052.1| hypothetical protein Rmet_6243 [Cupriavidus metallidurans CH34]
 gi|56410320|emb|CAI30202.1| hypothetical protein RMe0058 [Cupriavidus metallidurans CH34]
 gi|93359016|gb|ABF13102.1| putative Type I restriction-modification system methyltransferase
           subunit [Cupriavidus metallidurans CH34]
          Length = 297

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  L        ++ A  F TP  V  L   +  +  D           TL +P
Sbjct: 106 DVLGQTYMML-----ELGNDKAGQFFTPYPVSRLMARM--NIGDGAPFVQRDGFVTLSEP 158

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG GG +    + + D G  H     +     +++P    +    + +  + +      
Sbjct: 159 ACGAGGMVIACADALHDAG--HNYQQTMHATCIDIDPRCVHMTYVQLALLHIPAIVIHGN 216

Query: 273 SKNIQQGSTLSKDLF 287
           + +++  ST      
Sbjct: 217 ALSVEAWSTWFTPAH 231


>gi|310831505|ref|YP_003970148.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386689|gb|ADO67549.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 977

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 73/212 (34%), Gaps = 15/212 (7%)

Query: 112 KAIFEDFDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           + IF +   ++ + ++            L+ ++    + +      +  ++   IYE+ +
Sbjct: 166 ENIFSEIYENNKVNKMLVCEIPESATPYLIKELVFKVNNLIKKEQDMDFQLAGKIYEYFV 225

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            R  S +SE    F   R +       +  P      +  G + T+ DP  G+GGF    
Sbjct: 226 GRDQSAISELGAYFTD-RHITDYIYENIHSP----ILDDKGNVETMVDPFGGSGGFTLGY 280

Query: 224 MNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           ++++ +   +      +   +  ++  +     +  M     E      L          
Sbjct: 281 ISYLKNKYQNINWTTDLSKIYHFDMNLDVVKYAMLEMYCLTGEFPQSEHLRTINSFKD-D 339

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            K+     +F    +NPP+G       +  EK
Sbjct: 340 FKNQKGNMKFKNIFTNPPYGGDKITKSETTEK 371



 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 23/214 (10%)

Query: 224 MNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279
            +   +   + K   I    P+G +   ++       ++ +  E   ++       +   
Sbjct: 337 KDDFKNQKGNMKFKNIFTNPPYGGDKITKSETTEKMELIKKHCEDFLKKKYKLKNMKQIS 396

Query: 280 ---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP----GLPKIS 332
              +  SKD     ++          KK E +   V   + +     +         K  
Sbjct: 397 NIKNIDSKDKAKLDQYDTIYKKLNEIKK-ENEAKTVSLLNSSPRFQLYAKQNKIDSSKCK 455

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D   +  + + + L      GG A  VL     F     S    +R+  +EN  +E +V+
Sbjct: 456 DKEAVSFLMMMDLL----EEGGTAVGVLKEGIFF----DSKYKYLRQHCVENFKVEKVVS 507

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           +    F  T+  T +   SN     +  +++  +
Sbjct: 508 IDASQFENTSTKTSIIKFSN---TGKTDQIEFYD 538


>gi|295697974|ref|YP_003602631.1| hypothetical protein ECL_A136 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060086|gb|ADF64823.1| hypothetical protein ECL_A136 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 263

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y           ++    + +P  +  L   LL+       K       TL +P
Sbjct: 111 DFLGALYME-----QELGADEMGQYFSPSCISRLMAGLLMPGAQETIKREGW--MTLDEP 163

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            CG+ G +      +A+ G  +     L     +++P    +    + +  +
Sbjct: 164 ACGSAGMVIAFAYWMAEAG--YNPSEQLYATCTDIDPMVADMAFIQLALLGI 213


>gi|309378599|emb|CBX22777.1| putative DNA adenine methyltransferase subunit of Type I
           restriction/modification system [Neisseria lactamica
           Y92-1009]
          Length = 138

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/95 (11%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           +  +        + +V LI+A+ L    ++   ++ +++  + ++I + + +++    FS
Sbjct: 5   ILFIDK----ANKDEVVLIDASGLGEKTKDGKNQKTVLSRAEEQKICNTFTNKQAVEDFS 60

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            ++ Y     +   +         +D   ++  E 
Sbjct: 61  VVVGYDEIKAKNYSLSAGQHFEVKIDYVDISAEEF 95


>gi|291066989|gb|ADD74105.1| type I restriction-modification system methyltransferase subunit
           [Rickettsia felis]
          Length = 224

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 31/165 (18%)

Query: 219 FLTDAMNHVADCGS-----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            L  +  H+ D  S     + +       +G E+  + + +    M++           +
Sbjct: 1   MLITSYKHIYDNLSLRTPENIQRLKKQTVYGGEI-TKMYRIAKMNMILAGDGHSNIVRQN 59

Query: 274 KNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 +    D+             ++   +SN PFG+K + +   +            
Sbjct: 60  SYGTPDTIKQIDVIKDGFVTKENIKIKYDVVISNMPFGRKMKTEHAGL------------ 107

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             G        +  ++H  N L    N   R  +++    LF+ R
Sbjct: 108 -YGFN-TRSAEITGVLHCLNSL--NNNENARLGLIVPEGILFDKR 148


>gi|89070229|ref|ZP_01157553.1| hypothetical protein OG2516_07168 [Oceanicola granulosus HTCC2516]
 gi|89044149|gb|EAR50307.1| hypothetical protein OG2516_07168 [Oceanicola granulosus HTCC2516]
          Length = 1024

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 80/276 (28%), Gaps = 32/276 (11%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +    + +    Y      +  E+         +  IYE   + +  + ++      TP 
Sbjct: 251 TAKREMLRGLRPYYQAIETAAAEITDHAEKQTFLKVIYEGFYQSYNPDAADRLGVVYTPN 310

Query: 182 DVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPPI 239
           ++V           +  F +        + DP  GTG F+ + + H+  +  +  +    
Sbjct: 311 EIVRFMVRATDWLCERHFGKRLADQGVEILDPATGTGTFVCELIEHMRGEPRAVLERKYR 370

Query: 240 LVPHGQELEPETHAVCVAGM------------------LIRRLESDPRRDLSKNIQQ--- 278
              H  E+    + V    +                   +  L++     + +  Q    
Sbjct: 371 EELHANEVAILPYYVANLNIEATYAGITGQIAEYPNLCFVDTLDNVGGLGIRRGQQMSFL 430

Query: 279 -----GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                 +T        ++    + NPP+    + + D  +         R      K+S 
Sbjct: 431 GQFTDENTERVQAQNRRKISVVIGNPPYNANQQNENDNNKNREYPRIDERVRNTFVKLST 490

Query: 334 GSMLFLMHLANKL----ELPPNGGGRAAIVLSSSPL 365
                +  + ++            G  A V +SS +
Sbjct: 491 AQKTKVYDMYSRFYRWAFDRIADEGIVAFVTNSSFI 526


>gi|332523009|ref|ZP_08399261.1| type III restriction enzyme, res subunit [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314273|gb|EGJ27258.1| type III restriction enzyme, res subunit [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 1982

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 118/432 (27%), Gaps = 88/432 (20%)

Query: 20  EDLWGDFKHTDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVA 76
            +L       DF  VI   P   LR LE   +       E+      +  +L+ F     
Sbjct: 483 NNLIRIELQNDFTDVIEQNPVLFLRTLEDITQALHVPSVEEKEEVEETQQELDLFSFMDM 542

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLEKAG 131
                  S+ + S   S+N R   +    S  +    + E     DF F   +       
Sbjct: 543 EEQNEPVSQVTASV--SSNKREAKQEEALSEDELEPEVTETPPTTDFHFPEDLTDFYPKT 600

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTP-----RDV 183
              K+  N + I L      +   +   E  L+ ++        E F    P     R+ 
Sbjct: 601 TRDKVEMNVAAIRLVKRLEAEHRQATPSEQELLAKYVGWGGLANEVFDEYNPKFSKEREA 660

Query: 184 VHLAT-----------ALLLDPDDALFKESPG--------MIRTLYDPTCGTGGFLTDAM 224
           +               +L     D                    + DP+ GTG F     
Sbjct: 661 LKTLVTDKEYSDMKQSSLTAYYTDPTLIRQMWEKLERDGFTGGKILDPSMGTGNFFAAMP 720

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            H+ +             +G EL+  T A+         L  +   ++            
Sbjct: 721 KHLRENSE---------LYGVELDTITGAIAK------HLHPNSHIEVKG-------FET 758

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F    F   LSN PF      D              R+        D   +   +   
Sbjct: 759 VAFNDNSFDLVLSNVPFANIRIAD-------------SRY--------DKPYMIHDYFVK 797

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K     + GG+ AI+ S+  +           I + + E       V LP   F     T
Sbjct: 798 KSLDLVHDGGQVAIISSTGTMDKRTEN-----ILQDIRETTDFLGGVRLPDSAFKAIAGT 852

Query: 402 NIATYLWILSNR 413
           N+ T +      
Sbjct: 853 NVTTDMLFFQKH 864


>gi|259502899|ref|ZP_05745801.1| adenine-specific methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169150|gb|EEW53645.1| adenine-specific methyltransferase [Lactobacillus antri DSM 16041]
          Length = 338

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 40/253 (15%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A   MTP  +  L   L+    + + K +     T++DP  GTG  LT  +N +    +
Sbjct: 97  QANHQMTPDTIGFLMAFLI----EKISKLNRPS--TIFDPAVGTGNLLTTVINQLQKASA 150

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +G + +P    V  A + ++ L  D     + N                 
Sbjct: 151 E-----PIHGYGIDNDPAMLEVASASVALQGLNVDLFYQDAIN----------ALDIPEC 195

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +++ P G         +++  KN    R   G          ++ HL  +  L    
Sbjct: 196 DLAVADLPIGYY------PLDQNTKNYR-TRAQEGHS--------YVHHLLIEQALNYLR 240

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G   + L  S LF  +         +W+     ++ ++ LP +LF   N    + +L  
Sbjct: 241 PGGFGVFLVPSNLFQTKEA---QPFIQWMHSVSYLQGLINLPAELFANQNAQKAILLLQR 297

Query: 413 RKTEERR-GKVQL 424
              + ++  KV L
Sbjct: 298 HGGDSKQAAKVLL 310


>gi|331746792|ref|YP_004422829.1| hypothetical protein TERMP_02214 [Thermococcus barophilus MP]
 gi|315185003|gb|ADT85187.1| hypothetical protein TERMP_02214 [Thermococcus barophilus MP]
          Length = 1199

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 99/317 (31%), Gaps = 63/317 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTLGST 94
              ++ LE         ++  +  +  S++     +++++   +  +NT E         
Sbjct: 300 LIFVKFLEDKGLVPGGLLKRTFEEWRNSSVPVSYYKAYLEPLFFGVFNTPEEERDRKVIE 359

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL------HPD 148
           + R+        F +N +        +     +    ++ +I K     +       + +
Sbjct: 360 HFRDIPYLNGGLFRENLR--------NEKQYDIPDDNVMEEIIKFLERYDFTLGSKSNEE 411

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-------------- 194
           ++   ++ ++YE LI    ++  +G   + TP +V        ++P              
Sbjct: 412 SLDPDILGHVYEKLINLLTNKGQKGLGAYYTPEEVTRTIVKSTVEPVVIKKLKEVLKKWG 471

Query: 195 -----------DDALFKESPGMIR--------------TLYDPTCGTGGFLTDAMNHVAD 229
                      D+ L ++ P                   + DP  G+G FL   +  + +
Sbjct: 472 WQEQLLNFSTLDEVLNEDRPITRDGRVLKDFLDEINKMKILDPAVGSGHFLISVLKELLE 531

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    +    G+E       + +    +  ++ D        ++    L +DL   
Sbjct: 532 IKK-----RVHSLIGEEFNTYKLKLEIILNNLYGVDIDETAVEVAKLRLWLALIEDLDVD 586

Query: 290 --KRFHYCLSNPPFGKK 304
             +R    L N  +  +
Sbjct: 587 AVRRGDVILPNIEYNVR 603



 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 77/259 (29%), Gaps = 24/259 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+G      +  +       E   +               +    + +    
Sbjct: 749 FDIIIGNPPYGNILSNIEKDIIDTRYREEEATYSVD----------SFLAFMRRSQELLK 798

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GG    ++ +S       G   ++ R+  L+   ++  + LP D+F    +   + +L 
Sbjct: 799 DGGYLGFIIPASF----GTGVNYTKARKHFLQTMELKVFLYLPFDVFEGAYVDNSIIVLK 854

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDY 470
           N +      +V +        +     +   ++   +  +I  I Y    N    R+   
Sbjct: 855 NEEP-SMDNEVLI-------YAFPKRSRLEELLTVWENPKIEKIRYSLLLNDPLCRIFPG 906

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
               Y  +  +  L      D   L  L        L+  ++   + + K  +  +    
Sbjct: 907 GNVIYEILDHISSLSQRGNYDVYPLGDLTNSTIGI-LASKYKFSLVKLSKWHLPYLEGNV 965

Query: 531 WAESFVKESIKSNEAKTLK 549
           +      +  K  +    K
Sbjct: 966 YRYITNLKQTKFVDFSQHK 984


>gi|67921034|ref|ZP_00514553.1| adenine specific DNA methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67857151|gb|EAM52391.1| adenine specific DNA methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 682

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 75/514 (14%), Positives = 141/514 (27%), Gaps = 89/514 (17%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
            L  L  T    ++ S I    D         D SS +    +         +F      
Sbjct: 183 FLQGLFRTVIETDIISKIDWAIDKLVEFLAKVDMSSILENFGRETRQEDPVVHF------ 236

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                       YE  +  + + + +    + TP  VV      + D  D  F    G+ 
Sbjct: 237 ------------YETFLGAYEASLRKSRGVYYTPEPVVSFIVQAVNDLLDKEFDLDDGLG 284

Query: 207 R---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----------ILVPHGQELEPETHA 253
               T+ DP  GTG FL + +  +      + +            +   +G EL    + 
Sbjct: 285 SRKVTILDPATGTGTFLYEVIKQIRRNFEKYGVNRWNELLRDKKVLERLYGFELLMTPYT 344

Query: 254 VC-------------------VAGMLI-RRLESDPRRDLSKNIQQGSTLSKDL---FTGK 290
           +                       + +   LE   ++      +  S  +       T  
Sbjct: 345 IAHLKLALLLENLGYRFQDKERLNIYLTNALEEGVKKSEVLFGKYISEEANKAAAVKTEI 404

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL----ANKL 346
             +  L NPP+    E   + +E   ++    +      K  +   L   ++      + 
Sbjct: 405 PIYVVLGNPPYSGHSENKNNWIESLVRD--YYKIDGVDLKEKNTKWLQDDYVKFIRFGQW 462

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           ++  N  G  A V +   L           +R+ LL+      I+ L  +          
Sbjct: 463 KIDKNSQGILAFVTNHGYL----DNPTFRGMRQNLLQTFTKIYILDLHGN---------- 508

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENG 462
               S +K     G      A      I+        I ++    +  +Y S        
Sbjct: 509 ----SKKKEVSPDGS-----ADKNVFDIQQGVSIGIFIKEENNTDLATVYHSDLWGSRES 559

Query: 463 KFS--RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           K+   + L   T  + +I+   P  +    D   L           + P++    +    
Sbjct: 560 KYELLQQLSLDTVEWEKIEPSSPFYLFIPQDTDLLEEYNQGWKITDIMPINSVGIVTARD 619

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
            +  Q       +        S E    K K  K
Sbjct: 620 YLTIQWTAEEVEKIINDFVSLSEENAREKYKLGK 653


>gi|298737016|ref|YP_003729546.1| hypothetical protein HPB8_1525 [Helicobacter pylori B8]
 gi|298356210|emb|CBI67082.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 803

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRSAVR-----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL   +  V+       +  +    +  E F      +   T    L+ L     
Sbjct: 178 KYLKNALIKYQEKVQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 235

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 236 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 295

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 296 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 355

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 356 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEEKYQNLLKQFYGFEYLIAPYA 415

Query: 254 VCVAGM 259
           +    +
Sbjct: 416 IAHLNL 421


>gi|269958154|ref|YP_003327942.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306835|gb|ACZ32384.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 252

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 137 CKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            +  +G+ELH   D     ++  +Y  L      +    A  F TP D+  L  A+ +  
Sbjct: 100 FEVLAGVELHASFDEAGGDLLGPVYMSLRGLSSQQA---AGAFYTPPDLSVLIGAMTM-- 154

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                   P     + +P CG GG +   +  +   G+    P        +L+P   A+
Sbjct: 155 --------PREGAHVMEPCCGAGGMVLGVVKAMRQAGAD---PDTCTWVLNDLDPVAVAL 203

Query: 255 CVAGMLIRRL 264
               +    L
Sbjct: 204 AGVNLAAHGL 213


>gi|224024415|ref|ZP_03642781.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM
           18228]
 gi|224017637|gb|EEF75649.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM
           18228]
          Length = 1913

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 72/246 (29%), Gaps = 49/246 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L  D +  +    +              F   +
Sbjct: 147 KPDADIMAFEKDLMT------GKILKHLHPDQKVRIQGYEKIEKPFMNH------FDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E  N            I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTNSHDMARRSASKTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHANLVGVARLPNNLFTENAGTEVGSDLIILQKN 298

Query: 414 KTEERR 419
             +  +
Sbjct: 299 SGKNGK 304


>gi|319757742|gb|ADV69684.1| hypothetical protein SSUJS14_0589 [Streptococcus suis JS14]
          Length = 1982

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 63/224 (28%), Gaps = 51/224 (22%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIAD-------- 783

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+        D   +   +   K     + GG+ AI+ S+  +           
Sbjct: 784 -----NRY--------DKPYMIHDYFVKKSLDLVHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           I + + E       V LP   F     T++ T +        +E
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKHLNKE 869


>gi|330507139|ref|YP_004383567.1| type IIS restriction enzyme Eco57I (endonuclease Eco57I)
           [Methanosaeta concilii GP-6]
 gi|328927947|gb|AEB67749.1| type IIS restriction enzyme Eco57I (Endonuclease Eco57I)
           [Methanosaeta concilii GP-6]
          Length = 906

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 24/160 (15%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG--- 167
            +   +D      I RL      Y+              +P  ++  +YE  + +     
Sbjct: 297 LRLNIDDKPLKDIIRRLYYPDSPYEF-----------SVLPAEILGQVYEQFLGKVIRLT 345

Query: 168 ----------SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
                      EV +      TP  +V       L P       S     ++ DP CG+G
Sbjct: 346 DGHRAVVEDKPEVKKAGGVKYTPAYIVDYIVKNTLWPTLEEKTPSDATKISVLDPACGSG 405

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
            FL  A  H+ D      +  ++      L P +  +   
Sbjct: 406 SFLIVAYQHLLDWHREWYVQNLVPLLESGLRPSSIQIRHM 445


>gi|118497108|ref|YP_898158.1| hypothetical protein FTN_0509 [Francisella tularensis subsp.
           novicida U112]
 gi|194323405|ref|ZP_03057182.1| adenine specific DNA methyltransferase [Francisella tularensis
           subsp. novicida FTE]
 gi|118423014|gb|ABK89404.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194322260|gb|EDX19741.1| adenine specific DNA methyltransferase [Francisella tularensis
           subsp. novicida FTE]
          Length = 1130

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 77/589 (13%), Positives = 169/589 (28%), Gaps = 115/589 (19%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +     +     A    +  L++F +         S   L  L       N++  I    
Sbjct: 210 DIYAQTLAYGMFAARYHDEVLDTFSRQEAAEKIPKSNPFLRRLFDYVAGTNIDDRIKHTV 269

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           DN   +F   D    +++  ++        +F                  YE  +  + S
Sbjct: 270 DNLADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDS 311

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------------- 208
           ++ +    + TP+ VV      + +   + F  S G+  T                    
Sbjct: 312 KLRKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRSKSGY 371

Query: 209 -----------LYDPTCGTGGFLTDAMNHVADCG---------SHHKIPPILVPHGQELE 248
                      + DP  GTG FL +A+  + +            + +   I   +G EL 
Sbjct: 372 KQIEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELL 431

Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNI----------QQGSTLS------------- 283
             ++A+      ML+      P+   S+                T +             
Sbjct: 432 MASYAMAHLKLDMLLTDTGYKPKSSQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEA 491

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL- 342
             +         + NPP+        + +    ++ +         +    +  ++  + 
Sbjct: 492 NQIKKDTPVMVVMGNPPYSGISSNTGEWITSLIEDYKYVDGVHFNERKHWLNDDYVKFMR 551

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
             +  +  NG G  A +     L           +R  LL+  D I   + L  +     
Sbjct: 552 YGQYYIEKNGSGVLAFINPHGFL----DNPTFRGMRYSLLKTYDKIYT-IDLHGN----- 601

Query: 402 NIATYLWILSNRKTE----ERRGKVQLI-NATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
                    S +K       +   V  I     +   ++   KK   + +       D+Y
Sbjct: 602 ---------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAEVYH---YDLY 649

Query: 457 VSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R +  +F       + G+++++  +P       D +  A  E   +   L P + +  
Sbjct: 650 GKRNDKYEFLSQNSLSSIGFKKVEYSKPYYFFIPKDDSQRASYEKGFSVVSLFPENVTGI 709

Query: 516 LDILKP--MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           + +     + +             +  K+ +    K K  K++    + 
Sbjct: 710 VTMGDSFAIAETKQQLKDRLEDFLQIEKTEDNLKQKYKLGKNYAKWILE 758


>gi|107024431|ref|YP_622758.1| N-6 DNA methylase [Burkholderia cenocepacia AU 1054]
 gi|105894620|gb|ABF77785.1| N-6 DNA methylase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 76/256 (29%), Gaps = 42/256 (16%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAED----FMTPRDVVHLATALLLDPDDALFKESPGMI 206
              ++  IY  L   +     E        F TP  +      LL   DD         +
Sbjct: 72  KKDLLEAIY-WLSSAYAQLAGEERRKQLAMFFTPPSLTK---RLL---DDLSASGVDFSV 124

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAG- 258
           R   DP CG   FL      + D           +         G + +    A+C    
Sbjct: 125 RKFCDPACGGAAFLAPIAMRMRDALRERGTSATQILDHVQRHLLGFDKD---AALCEMSK 181

Query: 259 ----MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               M++              I QG +L +           + NPPF K    +     +
Sbjct: 182 HFLLMVLHDEVVATGARPKFQIHQGDSLIRAQSLLGALDVVVCNPPFRKMPSAEVAHYLE 241

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                    F   +    +   LF+      L      GG  A+V  +S L    +G   
Sbjct: 242 H--------FADIIEAQPNLYALFMALCVKLL----APGGACALVTPTSFL----SGQYF 285

Query: 375 SEIRRWLLENDLIEAI 390
           S++R +LL    + +I
Sbjct: 286 SKLRTFLLTQANVLSI 301


>gi|218263717|ref|ZP_03477737.1| hypothetical protein PRABACTJOHN_03427 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222543|gb|EEC95193.1| hypothetical protein PRABACTJOHN_03427 [Parabacteroides johnsonii
           DSM 18315]
          Length = 841

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 72/246 (29%), Gaps = 49/246 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++       L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITCTIAEALHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++  L  D +  +     QG    +  FT   F   +
Sbjct: 147 KPDADIMAFEKDLMT------GKILGHLHPDQKVRV-----QGFEKIEKPFTDY-FDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +                    +   K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTGSQDP-------ARRSAQKAIHNYFFLKSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++    +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPSNAP----IREYMMSQANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298

Query: 414 KTEERR 419
             ++R 
Sbjct: 299 SGKKRE 304


>gi|50119547|ref|YP_048714.1| hypothetical protein ECA0597 [Pectobacterium atrosepticum SCRI1043]
 gi|49610073|emb|CAG73513.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 653

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 61/196 (31%), Gaps = 18/196 (9%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +  F ++A Y    T  +S     S    +N   ++    D+     + +       + +
Sbjct: 431 IRQFQEIAPYENRWTV-FSDFIHMSAAALHNRCHFVQEIEDDYLRRIKRYK------KAD 483

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +            G+E          + +++  L         +    + TP  V ++  
Sbjct: 484 QNRFPLLFNTLVEGMEFSAS----DFLGSVFMEL-----ELGDQRRGQYFTPYSVGYMMA 534

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L L               T+ DP CG GG +      + + G +      ++    +++
Sbjct: 535 KLQLADGLPALTSGERDFITVSDPACGAGGLIVAMAQAMLEAGFN--PQKQMMAVCVDID 592

Query: 249 PETHAVCVAGMLIRRL 264
           P    +    + +  +
Sbjct: 593 PVAAMMAYVQLALCGI 608


>gi|317014747|gb|ADU82183.1| adenine specific DNA methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 808

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 25/239 (10%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           +    +   S++ + +  +    +  E F     ++   T    ++ L     + NL++ 
Sbjct: 189 VSSIKDEQVSSIFKNFKEYLYEELSFEDF--SDAFAQTLTYSLFIAKLNHPFEKINLDNV 246

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPD-RVMSNI 158
            +S   N   I E  DF   +  +++       +  +  +     +  D   D     + 
Sbjct: 247 RSSIPKNFAVIREMADFLKKLDTIQEIQWLLNEILSLINHVDVGSIIKDLNDDKDPYLHF 306

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--------LY 210
           YE  +  +  ++ E    + TP  VV      L       FK++P  +++        L 
Sbjct: 307 YETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKLL 366

Query: 211 DPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHAVCVAGM 259
           D   GTG FL +A     +              K   +L   +G E     +A+    +
Sbjct: 367 DFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 425


>gi|23428558|gb|AAL23675.1| TaqII restriction endonuclease [Thermus aquaticus]
          Length = 1105

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 80/281 (28%), Gaps = 61/281 (21%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDPT 213
             YE  ++ +  ++ +    + TP  VV     L+   L     L +       T+ DP 
Sbjct: 295 YFYEDFLQAYDPDLRKDMGVYYTPVPVVRAMVRLVDEALKEGFGLAEGLAHEKVTVLDPA 354

Query: 214 CGTGGFLTDAMN---------HVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIR 262
            GTG FL   +          +       +        HG EL    +AV    +   I+
Sbjct: 355 MGTGTFLLATLERALANMASLYGRGYRGQYAKEVASRLHGIELMVGPYAVAQLRLSQAIQ 414

Query: 263 RLESDPRRDLSKNIQQGSTLSKD-----------------------LFTGKRFHYCLSNP 299
             E     +   N+    TL                          L   K     L NP
Sbjct: 415 G-EGGSLPEEGLNLYLADTLEAPEAPPLEQVFFYERLAEERKRAAELKRDKPILVVLGNP 473

Query: 300 PFGKKWEKDKDAVEKEHKNGELGR--------FGPGLPKISDGSMLFLMHLANKL----- 346
           P+ +   + ++  E+E K G + R            L    +  +   +     L     
Sbjct: 474 PYDRVEGESQE--ERERKGGWVLRGPREPYPLMEDFLRPAREADLGIHLKNLYNLYVYFW 531

Query: 347 --------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   E  P  GG    +  SS L           +RR
Sbjct: 532 RFALWKVFEQDPERGGVLCFITPSSYLQGPAFAGMREHVRR 572


>gi|146318616|ref|YP_001198328.1| SNF2 family protein [Streptococcus suis 05ZYH33]
 gi|145689422|gb|ABP89928.1| SNF2 family protein [Streptococcus suis 05ZYH33]
          Length = 2274

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 118/423 (27%), Gaps = 86/423 (20%)

Query: 29  TDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTS 84
            DF  +I   P   +R  E   +       EK      ++ +L   SF++          
Sbjct: 491 NDFSDIIEQNPVLYMRTWEEVRQALHQLKAEKQTELEEADQELNLFSFLEEEPVQSIGLL 550

Query: 85  EYSLSTLGSTNTR----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           E   S  G  +T     +N            +    DF F   +          K+  N 
Sbjct: 551 EPDGSEKGHNDTELEESDNQIPEEEVVETIPEIPVTDFYFPEDMTDFYPKTARDKVETNI 610

Query: 141 SGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTPR------DVVHLATAL- 190
           + I L  +   +   +++ E  L+ ++        + F    P+      ++  L T   
Sbjct: 611 AAIRLVKNLEVEHRNASLSEQELLAKYVGWGGLANDFFDDYNPKFSMEREELKSLVTDKE 670

Query: 191 -----------------LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                            L+       +        + DP+ GTG F      H+ +    
Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMWDKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE- 729

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G EL+  T A+         L  +   ++              F    F 
Sbjct: 730 --------LYGVELDTITGAIAK------HLHPNSHIEIKG-------FETVAFNDNSFD 768

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PF      D              R+        D   +   +   K     + G
Sbjct: 769 LVISNVPFANIRIAD-------------NRY--------DKPYMIHDYFVKKSLDLVHDG 807

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410
           G+ AI+ S+  +           I + + E       V LP   F     TN+ T +   
Sbjct: 808 GQVAIISSTGTMDKRT-----ENILQDIRETTEFLGGVRLPDSTFKAIAGTNVTTDMLFF 862

Query: 411 SNR 413
              
Sbjct: 863 QKH 865


>gi|189461123|ref|ZP_03009908.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136]
 gi|189432213|gb|EDV01198.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136]
          Length = 1658

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 105/331 (31%), Gaps = 62/331 (18%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI- 158
           L + + + +   K   +D   +     +      +   K+   I     TV D V   I 
Sbjct: 9   LVANVEAIATAMKVRIDDRQATDEEKEVLSRYSGFGGIKDVLNIG-TEHTVSDDVAEPIR 67

Query: 159 -----------YEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                      Y+  +R+    S  S     F TP          +     A FK++   
Sbjct: 68  KLQDLIGAYPYYDDAMRQAVINSIKSSVLTAFYTP----KFLVDAVTRQIHATFKDNCLQ 123

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           + T  +P+ G GGFL  +M             P    +  E +      C+ G+++  L 
Sbjct: 124 MSTFLEPSAGIGGFLPVSM-------------PGTRSYAFEKD------CLTGLIL-SLL 163

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D    ++   +   T++      + F    SN PFG              +  +   + 
Sbjct: 164 YDEATTVTAGFE---TIADQHLEHESFDVIASNIPFG------------NFRVFDAEMWK 208

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G         +        +EL  N GG  A V             G   +R +L+ + 
Sbjct: 209 KGGMYEQSAKTIHNYFFVKAMELL-NEGGLLAFVAPRGI----ADTPGNKFVREYLVNHA 263

Query: 386 LIEAIVALPTDLFFRTN---IATYLWILSNR 413
            +   + LP  LF +T+   + + L I    
Sbjct: 264 DLITALRLPDTLFMQTSGIEVGSDLLIFQKH 294


>gi|319941355|ref|ZP_08015684.1| DNA helicase restriction enzyme Type III R subunit [Sutterella
            wadsworthensis 3_1_45B]
 gi|319805116|gb|EFW01943.1| DNA helicase restriction enzyme Type III R subunit [Sutterella
            wadsworthensis 3_1_45B]
          Length = 1661

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 57/435 (13%), Positives = 127/435 (29%), Gaps = 57/435 (13%)

Query: 41   LRRLECAL-EPTRSAVREKYLAFG--------GSNIDLESFVKVAGYSFYNTSEYSLSTL 91
            ++ +   L +PT++  RE + +F          S  D E    +  +        +L T+
Sbjct: 764  IKHINDVLKDPTKTKSREAFESFKKELKATLNDSLTDDEIVEMLGQHVVTQPILDALFTI 823

Query: 92   GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS-GIELHPDTV 150
             ++   +   S     +    ++ +  D  S     +     Y+  +N +  I+   D  
Sbjct: 824  QTSEGTSYEFSKQNPIAIAMTSMMDSLDKESMRLATKSLEDFYRSVRNRTRTIKTSADRQ 883

Query: 151  PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTL 209
               ++  ++E   +    +  E      TP ++V      + D                +
Sbjct: 884  --LLIKELFEKFFKAAFPKQQEKLGIVYTPIEIVDFINQSVADLLKKEFNCSIADDGIHI 941

Query: 210  YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESD 267
             DP  GTG F+   M                  H  E+ P  + V    +  +   L  +
Sbjct: 942  LDPFSGTGTFIARLMQSGLIPTDRLPNKFEHELHANEIVPLAYYVASMNIEGVFHELCPN 1001

Query: 268  PRRDLSKNIQQGSTLSKDLFTG------------------KRFHYCLSNPPFGKKWEKDK 309
                 ++ +    T + +  +                   +     + NPP+    +   
Sbjct: 1002 EVYQPNRVMIWTDTFANNRQSSIFSTTLGENNARLVELNRQDIRVIIGNPPYSVGQDNAN 1061

Query: 310  DAVEKEHKNGELGRFGPGLPKIS---DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSP 364
            D  + EH +    R        +   + + L+  ++             G    V ++  
Sbjct: 1062 DDNQNEHYDELDDRIAKTYAAKTEAVNKNSLYDSYIRAYRWASDRIGNKGIIGFVTNAGW 1121

Query: 365  LFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWI 409
            + +  A      +R+ L E      +  L  +              +F   +     +  
Sbjct: 1122 IDSNSADG----MRKCLTEEFSSIYVYHLKGNQRTSGERSRQEGGKVFGEGSRAPVAIVF 1177

Query: 410  LSNRKTEERRGKVQL 424
            L        RGK+  
Sbjct: 1178 LVKNPASTERGKIFF 1192


>gi|296131126|ref|YP_003638376.1| putative type II DNA modification enzyme [Cellulomonas flavigena
           DSM 20109]
 gi|296022941|gb|ADG76177.1| putative type II DNA modification enzyme [Cellulomonas flavigena
           DSM 20109]
          Length = 1322

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 38/242 (15%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIF 115
           +Y +                   +      L  LG  +      L      F D+   +F
Sbjct: 324 EYFSTTRLRRLALRRRGTRHGDLWQAQRLVLRRLGQDDGCPELALPGLGGIFDDDGTELF 383

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR----------- 164
            D +  +         L     K      +    +    + +IYE L+            
Sbjct: 384 TDAELPNDALLSAVRHLSTVRPKGQPLRTVDYKNLGAEELGSIYESLLELVPRYQRTEQT 443

Query: 165 ----RFGSEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPG---MIRTLYDPTCG 215
                      +    + TP  ++ L     L P  D+A  K  P    +  ++ DP CG
Sbjct: 444 FSLENLAGNDRKTTGSYYTPSSLIDLVLDETLTPLLDEAERKPDPEAALLAMSVCDPACG 503

Query: 216 TGGFLTDAMNHVADCGSHHKIPPI----------------LVPHGQELEPETHAVCVAGM 259
           +G FL  A   +A+  +  +   I                   +G +L P    +    +
Sbjct: 504 SGHFLVAAARRIAERLAIVRSGEIDPTPTHLQDALYDVVGSCIYGVDLNPLAAELAKVSL 563

Query: 260 LI 261
            +
Sbjct: 564 WL 565


>gi|20385053|gb|AAM21167.1|AF254788_2 BssSI DNA modification methyltransferase [Geobacillus
           stearothermophilus]
          Length = 1127

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 77/256 (30%), Gaps = 36/256 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E  +      TP+ + +  T   +   +   K S   +  + D +CG G FLT    + 
Sbjct: 105 DEERKKMGAVFTPKWLANYVTKRAIYYWNENNKSS---LERVGDLSCGPGIFLTQLQKYT 161

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-------SDPRRDLSKNIQQGS 280
                          +G +  PE   +     L+   E       +D   +L+   Q   
Sbjct: 162 GQNTK---------IYGVDSNPEYVFLAS---LLSGSEERVFLECADTLINLAPEEQCDL 209

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                    K +   + NPP+     K   ++   H     G +  G         L + 
Sbjct: 210 FSQMYQTPSKDYDIIVGNPPYVS--SKTISSIYSNHIKELYGDYIEGNY------DLSVP 261

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFF 399
            + +  +   N G  A IV S              +I   L  N  I  I+      +F 
Sbjct: 262 FIVHTYKALKNNGIGALIVSSKFMHSRYG-----KKICELLARNTKILEIIDFGDGQVFK 316

Query: 400 RTNIATYLWILSNRKT 415
                  + I S +K 
Sbjct: 317 GKTTYVCVIIFSKQKP 332


>gi|315225841|ref|ZP_07867629.1| N-6 DNA methylase superfamily protein [Parascardovia denticolens
           DSM 10105]
 gi|315119973|gb|EFT83105.1| N-6 DNA methylase superfamily protein [Parascardovia denticolens
           DSM 10105]
          Length = 502

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 33/212 (15%)

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     +       +G +L+P    +  A M+  + +      L  ++++       +F 
Sbjct: 15  EQRDEIRTWAHHNLYGVDLDPINVKLSRALMIGAK-DGSTNIVLGDSLREQKWGEFPMFP 73

Query: 289 -------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-----SM 336
                     +   L+NPPFG+K +          +  +  R    + K ++G       
Sbjct: 74  PVIGSEADGSYDVVLTNPPFGEKLKI---------RTTDAKRAKYTICKHTNGGANSEQY 124

Query: 337 LFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
                    +E        GGR  IVL  +  F+          R+W+ ++  +  ++ +
Sbjct: 125 ADTELGLVFMERAYRLLAEGGRLGIVLPETYFFSTS----YRWFRQWVDQHFDVIGVMNV 180

Query: 394 PTDLFFRT-NIATYLWILSNRKTEERRGKVQL 424
           P + F       T  ++++ + T   +GKV L
Sbjct: 181 PMEAFQGFCRAKTNFYVMTKKTT---KGKVIL 209


>gi|253751738|ref|YP_003024879.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
 gi|251816027|emb|CAZ51647.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
          Length = 2274

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 118/423 (27%), Gaps = 86/423 (20%)

Query: 29  TDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTS 84
            DF  +I   P   +R  E   +       EK      ++ +L   SF++          
Sbjct: 491 NDFSDIIEQNPVLYMRTWEEVRQALHQLKAEKQTELEEADQELNLFSFLEEEPVQSIGLL 550

Query: 85  EYSLSTLGSTNTR----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           E   S  G  +T     +N            +    DF F   +          K+  N 
Sbjct: 551 EPDGSEKGHNDTELEESDNQIPEEEVVETIPEIPVTDFYFPEDMTDFYPKTARDKVETNI 610

Query: 141 SGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTPR------DVVHLATAL- 190
           + I L  +   +   +++ E  L+ ++        + F    P+      ++  L T   
Sbjct: 611 AAIRLVKNLEVEHRNASLSEQELLAKYVGWGGLANDFFDDYNPKFSMEREELKSLVTDKE 670

Query: 191 -----------------LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                            L+       +        + DP+ GTG F      H+ +    
Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMWDKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE- 729

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G EL+  T A+         L  +   ++              F    F 
Sbjct: 730 --------LYGVELDTITGAIAK------HLHPNSHIEIKG-------FETVAFNDNSFD 768

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PF      D              R+        D   +   +   K     + G
Sbjct: 769 LVISNVPFANIRIAD-------------NRY--------DKPYMIHDYFVKKSLDLVHDG 807

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410
           G+ AI+ S+  +           I + + E       V LP   F     TN+ T +   
Sbjct: 808 GQVAIISSTGTMDKRT-----ENILQDIRETTEFLGGVRLPDSTFKAIAGTNVTTDMLFF 862

Query: 411 SNR 413
              
Sbjct: 863 QKH 865


>gi|307269754|ref|ZP_07551084.1| type III restriction enzyme, res subunit [Enterococcus faecalis
            TX4248]
 gi|306513864|gb|EFM82466.1| type III restriction enzyme, res subunit [Enterococcus faecalis
            TX4248]
          Length = 1567

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 119/396 (30%), Gaps = 56/396 (14%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
            R LE   E      +           D  S   +    F  + +++++          + 
Sbjct: 702  RYLEDWSEDVAKIAQRHIEQITIMISDKNSQTAIEFDKFLKSLQHNINESIDEKQAIEML 761

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------- 152
            +     +   +A+F ++ F +     E    + +    F G     D + +         
Sbjct: 762  AQHLITAPIFEALFGEYSFVNNNPVSEAMDKIVEELSRFGGFNKEQDELKEFYDSVKLRA 821

Query: 153  ----------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KE 201
                      R++  +Y+    +   E ++      TP +VV      + D     F K 
Sbjct: 822  EGIDNAEAKQRIIITLYDKFFSKGFKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKA 881

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPE-----THAV 254
                   + DP  GTG F+   ++++ D        +  I   + QEL        ++ +
Sbjct: 882  IEDEGVHILDPFTGTGTFIVRTLHYLKDKLAKGEITLADITRKYTQELHANEIVLLSYYI 941

Query: 255  CVAGM-----LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF---------------HY 294
                +      +   E  P   +       ST  +D      F                 
Sbjct: 942  AAINIESTFAEMNHQEYKPFEGIVLTDTFESTEQEDTLDDTFFRTNDERLKRQQEVPVKV 1001

Query: 295  CLSNPPFGKKWEKDKDA---VEKEHKNGELGRFGPGLPKISDGSMLFLMHL--ANKLELP 349
             + NPP+  K + +         E  +  L  F       ++ + LF  ++         
Sbjct: 1002 IMGNPPYSAKQKNEDGNQIRTAYEKLDSSLQTFWVKTSTATNKNNLFDSYIRAMRWSSNR 1061

Query: 350  PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             +  G    + ++S +     G+    +R+ LLE  
Sbjct: 1062 ISDNGVIGFITNNSFI----DGNAMDGMRKSLLEEF 1093


>gi|294776307|ref|ZP_06741790.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|294449847|gb|EFG18364.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 1907

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 79/265 (29%), Gaps = 53/265 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L                 + +P+ G G F+   +            
Sbjct: 105 FYTPPEITDAIADVLHGRGIRP--------DRVLEPSAGVGAFVDAVL----------GY 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T  +      ++ L  D +  +     QG    +  FTG  F   +
Sbjct: 147 KPDADIMAFEKDLMTGRI------LKHLHPDQKVRV-----QGFEKIEKPFTGY-FDLVI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E               I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFTGSHDPARRSAAKTIHNYFFL-------KSLDTVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +     +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPSNAP----IREYMMRHANPVGVARLPNNLFTDNAGTEVGSDLIILQKN 298

Query: 414 KTEERRGKVQLINATDLWTSIRNEG 438
             ++R     L +  +++       
Sbjct: 299 SGKKRE----LYDYEEMFIQTGKTP 319


>gi|163816394|ref|ZP_02207760.1| hypothetical protein COPEUT_02583 [Coprococcus eutactus ATCC 27759]
 gi|158448391|gb|EDP25386.1| hypothetical protein COPEUT_02583 [Coprococcus eutactus ATCC 27759]
          Length = 735

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 131/417 (31%), Gaps = 45/417 (10%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
             LE     + + +  +  +   +         + +    +       +     L   I+
Sbjct: 10  SVLENLYYVINKNFGFYKRNFGHIYYLSVKDDETKFIDKMFGKVENKLSAQDKMLNYSIS 69

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           +       + E  +         +   +     N   IE+      ++ +  I   L+  
Sbjct: 70  AIYTATAVLIELLNRKGIEYNENQIEKICVGFSNMKNIEISFADKTEKELDEILFGLLTD 129

Query: 166 FGS-EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
               E  + +    TP +++     ++       + E   + +T+ DP CGTG F+   +
Sbjct: 130 GIDLESRKKSGSERTPDEIIKYMLDII------GYNEIVSISKTIVDPACGTGTFIKQII 183

Query: 225 NHVAD--------CGSHHKIPPILVPHGQELEPE----THAVCVAGMLIRRLESDPRRDL 272
           +   D             K+    +    + +P     T  V ++ ++ + L  + +  L
Sbjct: 184 DRFIDGLYVNQVTNTYKEKLLERKLIRAYDTKPSNVFVTKIVIISSLVKKNLICEIKDVL 243

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
               +        L  G    Y + NPP+          +  ++   E   F       +
Sbjct: 244 DMIRKLPVYCQDFLCVGDNSDYIIGNPPY----------IRLQNMPVEYRDFIKNNFVSA 293

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G          K +   N  GR  ++ S+  L           IR +L +   +  +V 
Sbjct: 294 TGRFDIFTCFLEKSDKLLNKNGRMCLITSNKYLTANYGVG----IRAYLSQAGHVRKLVD 349

Query: 393 LPTDLFFRTNIATYLWILSNR------------KTEERRGKVQLINATDLWTSIRNE 437
           L    FF   +   + +  N             KT E+ G+   +NA +L+  + NE
Sbjct: 350 LYDTKFFGAAVLPAIIMCENSKSDNCEVDYIGIKTAEQDGQRVCLNANELFEYVENE 406


>gi|328953087|ref|YP_004370421.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328453411|gb|AEB09240.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1231

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 98/309 (31%), Gaps = 41/309 (13%)

Query: 140 FSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            + I +     +   V+ +++E LI     E       F T  +VV L  +  +   D  
Sbjct: 320 INEIHDFDFSLLDYDVIGSVFERLI---APEERHKFGQFYTRPEVVDLINSFCIRRGD-- 374

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVA 257
                     + DP CG G FL  A     +     K   +L    G ++      +   
Sbjct: 375 --------EKVMDPACGGGTFLVRAYVRKRELAPARKHGQLLDDLFGVDISHFATHLSTI 426

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--------------------HYCLS 297
            +  R L               +  + + F                            + 
Sbjct: 427 NLATRDLIDADNYPQIARSDFFNLKTHNPFVTLPVKLKVKGLGKLQHRHAEIPPLDAVVG 486

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGR 355
           NPP+ ++ E  +   +K  + G    +   + + +   +     +H              
Sbjct: 487 NPPYIRQEEIPRAKDKKTPEPGTKEFYQVLVEQEAGAELSGRSDIHCYFWPHAATFLKED 546

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV-ALPTDLFFRTNIATYLWILSNRK 414
             + L +S  +         +++RWLL++  I A+  +L    F    +AT + IL  + 
Sbjct: 547 GWLCLLTSSQWLDVEYGF--KLQRWLLDHFAIAAVFESLVEPWFVGARVATAVTILRRQP 604

Query: 415 TEE-RRGKV 422
            ++ RR  V
Sbjct: 605 DDDARRDNV 613


>gi|325996631|gb|ADZ52036.1| Adenine specific DNA methyltransferase [Helicobacter pylori 2018]
          Length = 1061

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 29/247 (11%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN------TSEYSLSTLGSTN 95
           + L+ AL   +   ++  ++    N     + +++   F +      T    ++ L    
Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFIAKLNHPF 236

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVP 151
            + +L +  +S   N   I E  DF   +  +++   LL +I    + +++     D   
Sbjct: 237 EKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLND 296

Query: 152 D-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-- 208
           D     + YE  +  +  ++ E    + TP  VV      L    +  FK++P  +++  
Sbjct: 297 DKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSAL 356

Query: 209 ------LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETH 252
                 L D   GTG FL +A     +              K   +L   +G E     +
Sbjct: 357 DNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPY 416

Query: 253 AVCVAGM 259
           A+    +
Sbjct: 417 AIAHLNL 423


>gi|317474809|ref|ZP_07934083.1| hypothetical protein HMPREF1016_01062 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909490|gb|EFV31170.1| hypothetical protein HMPREF1016_01062 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 784

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 135/393 (34%), Gaps = 46/393 (11%)

Query: 35  ILPFTL--LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           I+PF L   R+L  AL    S            ++  +  V +  +     ++  ++++ 
Sbjct: 120 IIPFILHIYRKLRNALREAISGGDALKAFLYLISMIEDENVDLKYWGLPRGTKDVVNSIN 179

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           +      +    A  +++      D     T  RL      ++     + + L  +  P+
Sbjct: 180 NYLWEELVTELRAGLNNDKLIPNVDLILRHTAGRL------FEEANYIAQMPLQYELFPN 233

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++   Y            +    + TP  +            D           T++DP
Sbjct: 234 DIIKYDY----------NPKLVGAYFTPSYISRTIVEESFSNFDINSTHI-----TIFDP 278

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G FL +A+  +   G   +I  I    G ++     A+ +A  ++   + +    L
Sbjct: 279 ACGAGEFLVEALRQLKYKGYKGQIEVI----GWDIAQT--ALDMANYVLTFEKREWCTQL 332

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           + ++ + ++L  +        +   NPP+    + D++  E   +     +  P      
Sbjct: 333 TVSLYKRNSLQTEWPNNL--DFIFMNPPYISWEQMDEETRELACRILGGNKGRP------ 384

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
             ++  + +     +L  +  G    ++ SS L +       +  ++ L    L+  I  
Sbjct: 385 --NLAAVFYYLAAHKL--SHKGTLGCLMPSSMLNSISHMEIRNATKKTL--KPLL--IGR 436

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           L   +F    +   + I S    + R+ ++  I
Sbjct: 437 LGNYVFENAFVDACVIIASKSD-DSRQTQILWI 468


>gi|325998221|gb|ADZ50429.1| Adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 1060

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 29/247 (11%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN------TSEYSLSTLGSTN 95
           + L+ AL   +   ++  ++    N     + +++   F +      T    ++ L    
Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFIAKLNHPF 236

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVP 151
            + +L +  +S   N   I E  DF   +  +++   LL +I    + +++     D   
Sbjct: 237 EKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLND 296

Query: 152 D-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-- 208
           D     + YE  +  +  ++ E    + TP  VV      L    +  FK++P  +++  
Sbjct: 297 DKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSAL 356

Query: 209 ------LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETH 252
                 L D   GTG FL +A     +              K   +L   +G E     +
Sbjct: 357 DNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPY 416

Query: 253 AVCVAGM 259
           A+    +
Sbjct: 417 AIAHLNL 423


>gi|163816134|ref|ZP_02207502.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759]
 gi|158448554|gb|EDP25549.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759]
          Length = 684

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 51/326 (15%)

Query: 104 IASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKN-FSGIELHPD-----TVPDRVMS 156
           I   ++  +   +   D       L+      K  +   S  +   D        + V+ 
Sbjct: 127 IPETNEILREYIDGRLDVGVWSILLDDIIQDKKEIETWISEHDDMLDISYKFQKGEDVLG 186

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +Y   +      V + A  + TP ++V          D +         + + DP CGT
Sbjct: 187 LLY---MSVRDIGVRKAAGSYFTPTEIVRNMI-----MDISQDLGGGLKGKKVLDPCCGT 238

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL--------ESDP 268
           G FL      V           I   H  + +  +  +    + + RL        E D 
Sbjct: 239 GNFLIQFSEDV----------DICNIHAFDTDMLSVQLARFNLALTRLAGRENVKAEGDI 288

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           R        +      +        +   + NPP+G K++       +E+     GR   
Sbjct: 289 RTICENVECRDFLAKSEDRISNTVNYDVIIGNPPWGYKFDSAAQKALRENYKTAAGRGAE 348

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                 + ++  L              G  A VL  + L      +     R+ +     
Sbjct: 349 SYDIFVERALGLL-----------GDDGMLAFVLPEAVLDVRNHSAA----RQIIANTTN 393

Query: 387 IEAIVALPTDLFFRTNIATYLWILSN 412
           +  +  L  ++F           L  
Sbjct: 394 VRRVRFL-DNVFHGVQCPAVAMHLKK 418


>gi|206603352|gb|EDZ39832.1| DNA methyltransferase/helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1067

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 89/592 (15%), Positives = 166/592 (28%), Gaps = 122/592 (20%)

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +  D     + A Y    T+ + L  L S     +L+  IA   D+   +    D  S 
Sbjct: 224 NAPSDGHFTRQQAAYDLPKTNPF-LRKLFSHMAGPDLDDRIAWIVDDLAELLNKSDMPSI 282

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +    K         +F                  YE  +  +  ++ E    + TP  V
Sbjct: 283 LKDFGKGEGKEDPVVHF------------------YETFLSHYDPKMRELRGVYYTPEPV 324

Query: 184 VHLATALL--------------LDPDDALFKESPGMIRT----LYDPTCGTGGFLTDAMN 225
           V      +               D      +E    I T    + DP  GTG FL + + 
Sbjct: 325 VSYIVRSVDRILKETFKLKDGLADNTKTDIREGKQKIETHRVHVLDPATGTGTFLYEVIR 384

Query: 226 HVADCGSHHK--------IPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKN 275
            +++    +K           +   HG EL    +A+     G+ ++RL  D R +    
Sbjct: 385 QISESFKGNKGLWPGYVSDHLLPRIHGFELLMAPYAIAHLKLGLELKRLGYDFRSEERLG 444

Query: 276 IQQGSTLSKDLF----------------------TGKRFHYCLSNPPFGKKWE------- 306
           +   +T+                                   L NPP+            
Sbjct: 445 VYLTNTMEDPHPFSGAPLFMRWLAEETNIADKVKRKHPIMVVLGNPPYSGHSANTGEWIA 504

Query: 307 ---KDKDAVEKEHKNGELGRFGPGLPKISDGSML---FLMHL-ANKLELPPNGGGRAAIV 359
              + +D++ +E   G             +   L   ++  +   +  +   G G  A V
Sbjct: 505 GLLRGRDSLGREKITGSYFDVDGEPLGEKNPKWLNDDYVKFIRFAQWRIERTGYGILAFV 564

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            +   L           +R+ L+++      + L  +              S +K +   
Sbjct: 565 TNHGYL----DNPTFRGMRKSLMDSFDDLYFLDLHGN--------------SKKKEKTPE 606

Query: 420 GK----VQLIN---ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           GK    V  I    A  ++   +    K++    D R    D++  RE  K+  +     
Sbjct: 607 GKADKNVFDIQQGVAIGIFVKRQIRTGKKK----DPRLLHADLWGERE-AKYQWLASNDL 661

Query: 473 FGYRRIKVL--RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                  V    P       D++     E       + P++    +     +     P  
Sbjct: 662 ESTPWKTVSPNAPSYQFVPQDESLRKEYEKGWKITDIMPINSVGIVTARDELTIWNTPEA 721

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
             E+      +S E    K            +A   K   A      +G+  
Sbjct: 722 VWETVSDFVSRSPEDAREKYDLGP-------DARDWKVELAQKDLKKSGQSK 766


>gi|167010571|ref|ZP_02275502.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. holarctica
           FSC200]
          Length = 103

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEER 418
           +    LF  +  +    +++ LLEN  +  IV+LP  +F   + + T +         +R
Sbjct: 1   MPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFF------DR 52

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            G    I   +   +   +  K + +  +   + L+I+ S +
Sbjct: 53  EGSTTDIFYYE--VNPPYKLTKNKPVQFEHFAEFLEIWQSHK 92


>gi|240080252|ref|ZP_04724795.1| hypothetical protein NgonF_02937 [Neisseria gonorrhoeae FA19]
 gi|240120741|ref|ZP_04733703.1| hypothetical protein NgonPI_02993 [Neisseria gonorrhoeae PID24-1]
 gi|254493268|ref|ZP_05106439.1| restriction enzyme alpha subunit [Neisseria gonorrhoeae 1291]
 gi|226512308|gb|EEH61653.1| restriction enzyme alpha subunit [Neisseria gonorrhoeae 1291]
          Length = 249

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             P     SD  +  L  +   L++   GG   AI+  S  +   +A S        +++
Sbjct: 26  NPPYAQSKSDAELHELYFVKEMLDMLAEGGTGIAIIPVSCVIAPSKAKS-------EIVK 78

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
              ++A++++P++LF+     T + +    K  
Sbjct: 79  YHRLKAVMSMPSELFYPVGTVTCIVVFEAHKPH 111


>gi|317176853|dbj|BAJ54642.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16]
          Length = 833

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIVKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLNAYDPKLRESKGVYYTPDSVVKFIIDALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     + 
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEVRKISDGGISTKEDKYQNLLKQFYGFEYLIAPYT 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|15645966|ref|NP_208146.1| putative adenine specific DNA methyltransferase [Helicobacter
           pylori 26695]
 gi|2314522|gb|AAD08396.1| putative adenine specific DNA methyltransferase [Helicobacter
           pylori 26695]
          Length = 835

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL   +      ++   +  +    +  E F      +   T    L+ L   + 
Sbjct: 176 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPSE 233

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +    N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 234 KINLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 293

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 294 KDPYLHFYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 353

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 354 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 413

Query: 254 VCVAGM 259
           +    +
Sbjct: 414 IAHLNL 419


>gi|119493868|ref|ZP_01624433.1| hypothetical protein L8106_09086 [Lyngbya sp. PCC 8106]
 gi|119452380|gb|EAW33571.1| hypothetical protein L8106_09086 [Lyngbya sp. PCC 8106]
          Length = 425

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 86/310 (27%), Gaps = 45/310 (14%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR 207
           +     ++ IYE   + F  +V++      TP+ +V+     + D       K       
Sbjct: 118 SKKQDFLNTIYEKFFQGFSVKVADTHGIVYTPQPIVNFMVKSVEDILQREFGKSLVDKGV 177

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLES 266
            + DP  GTG FL   M  + +              H  E+    + +    +     E 
Sbjct: 178 HILDPFVGTGNFLIRVMREIVEIQKSALPYKYEQELHCNEVMLLPYYIAAMNIEHEYFEQ 237

Query: 267 DPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPPFGKKWEKDK 309
                  + I    T         DLF+ +                L NPP+      + 
Sbjct: 238 TGEYKSFEGICLVDTFEDQAVQQLDLFSPENMKRVQKQRNSNLFVILGNPPYNVGQLNEN 297

Query: 310 DAVEKEHKNGEL---------GRFGPGLPKISDGSMLF-LMHLANKLELPPNGGGRAAIV 359
           D  +      +            +       +  ++    +          +  G  A V
Sbjct: 298 DNNKNRKYTNKDKTGIDDIVSATYAKASKATNKNALSDPYVKAIRWASDRISDEGIIAFV 357

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL------------FFRTNIATYL 407
            ++S +           +R+ L +      +  L  ++             F   +   +
Sbjct: 358 TNNSFIDQIAFDG----MRQQLEKEFDQIYVFDLGGNVRKNPKLSGTTHNVFGIQVGVSV 413

Query: 408 WILSNRKTEE 417
            I   +K EE
Sbjct: 414 NIFVKKKNEE 423


>gi|218132264|ref|ZP_03461068.1| hypothetical protein BACPEC_00121 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992779|gb|EEC58780.1| hypothetical protein BACPEC_00121 [Bacteroides pectinophilus ATCC
           43243]
          Length = 139

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  S   ++ L  + + L++   GG    +V  S  +     G+   E+R  LL+   ++
Sbjct: 32  PPYSQKDVVELEFVEHLLDILTIGGIGVVVVPMSCAI-----GTKFKEVRERLLKKHTLK 86

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           A+ ++P ++F+ T     + +           +   
Sbjct: 87  AVFSMPDEIFYPTATNVCVMVWEAHNPHNEMVETFF 122


>gi|91204873|ref|YP_537228.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91068417|gb|ABE04139.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 190

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                +       G+  +V+             +  +R+ +L+N  I+AI++LP   FF 
Sbjct: 6   LFMEWIVKALKPNGKVFVVVPDGIFNR----QNDKNLRQLILDNCFIDAIISLPLKTFFT 61

Query: 401 TNIATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           T   TY+  ++ +    + +   V     +++     +    R  I  D  ++ ++++ +
Sbjct: 62  TPKKTYILAITKKHNISQIQTDPVFTYLCSEIGE---SRDIYRFDIEQDDLKEAVNLFNA 118

Query: 459 RENGK 463
            +  K
Sbjct: 119 FKGSK 123


>gi|313664975|ref|YP_004046846.1| hypothetical protein MSB_A0087 [Mycoplasma leachii PG50]
 gi|312949593|gb|ADR24189.1| hypothetical protein MSB_A0087 [Mycoplasma leachii PG50]
          Length = 142

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA 47
          +   L + IW++A  L  + +  ++   IL   L + L   
Sbjct: 6  TKQKLGSIIWESANKLRKNLEAHEYKDYILGMLLYKFLCEK 46


>gi|332884848|gb|EGK05103.1| hypothetical protein HMPREF9456_03016 [Dysgonomonas mossii DSM
           22836]
          Length = 1864

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 76/468 (16%), Positives = 133/468 (28%), Gaps = 90/468 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ V+               K+         +P+ GTG F++       +     K+
Sbjct: 105 FYTPKPVIDALA--------DALKDRGITPTRFLEPSAGTGAFISS----FKEIAPEAKV 152

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                    E +  T  +     L      D  R       +G            F    
Sbjct: 153 TSF------EKDLLTGKI-----LSHLYPEDKVRIEGYEKMEGRYSQH-------FDVIA 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG       D +   H+          +P +   +     +   K  +    GG  
Sbjct: 195 SNIPFGDV--SVFDPLLSNHE----------IPAVKQSTQAIHNYFFVKSVMSAREGGII 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IR +L++   + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVLNSEQN----KPIREYLMDTCDVVSAIRLPNNLFSDHAGTEVGSDLIVLQRN 298

Query: 414 KTE--ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                  + +   I +  L     N      +  D                 F+R++  R
Sbjct: 299 NKNILPSQRQQNFIESRKL----SNGISINNLFRD-----------------FNRVIQTR 337

Query: 472 TFGYRRIKVLRPLRMSFILDKT-GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                +I      + + +     G+  +  D+         Q   L   +   Q+     
Sbjct: 338 ----SKIDTDPYGKPAIVFTHEGGIDGIAKDLRQMLKEDFSQHLDLQRYQSHAQESLAQL 393

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
            +   V E+IK   A  +K + SK         F   DP       +  E  P+      
Sbjct: 394 QSRIEVTEAIKP--AIEIKPEQSKQQQTYSGTLFDMDDP------AIKKEPTPEAKPKSV 445

Query: 591 ENVPYLESIQDY-FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              P +     + F +E    V            K K       E  F
Sbjct: 446 TEQPLITLYDLFGFTQEERSQVN----KPKKRGRKSKSQASKAKEPPF 489


>gi|322411801|gb|EFY02709.1| SNF2 family protein [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 1826

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 496 KEYSDMKQSSLTAYYTDPHLIRQM--------WEKLERDGFTGGKILDPSMGTGNFFAAM 547

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T A+         L  +   ++           
Sbjct: 548 PKHLRENSE---------LYGVELDTITGAIAK------HLHPNSHIEVKG-------FE 585

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   LSN PF      D              R+        D   +   +  
Sbjct: 586 TVAFNDNSFDLVLSNVPFANMRIAD-------------SRY--------DKPYMIHDYFV 624

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+ S+  +           I + + E       V LP   F     
Sbjct: 625 KKSLDLVHDGGQVAIISSTGTMDKRTEN-----ILQDIRETTDFLGGVRLPDTAFKAIAG 679

Query: 401 TNIATYLWILSNR 413
           TN+ T +      
Sbjct: 680 TNVTTDMLFFQKH 692


>gi|300723990|ref|YP_003713304.1| hypothetical protein XNC1_3132 [Xenorhabdus nematophila ATCC 19061]
 gi|297630521|emb|CBJ91186.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 153

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L     P   + +++  L        ++  + F TP  V  +   + L     L +  P 
Sbjct: 2   LGLAQEPGDFLGSVFMRL-----ELDNKDLQQFFTPWSVARMMAEMQLHDAAGLLQTQPF 56

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +  TL +P CG G     A + + + G  H     L  +  +++P    +    + +  +
Sbjct: 57  V--TLCEPCCGAGCITLAAADVLRELG--HDPLCSLWVYAIDIDPLATVMAYIQLSLSGI 112

Query: 265 ESDPRRDLSKNI 276
            +      + + 
Sbjct: 113 PAAVTIGNALHD 124


>gi|76802196|ref|YP_327204.1| restriction/modification enzyme [Natronomonas pharaonis DSM 2160]
 gi|76558061|emb|CAI49647.1| probable restriction/modification enzyme [Natronomonas pharaonis
           DSM 2160]
          Length = 1258

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ +      +   ++ ++Y+   + F  E  +   +F TP+ VV           D + 
Sbjct: 384 FNVLRFDFGDIQGDLLGDLYQ---KYFDPETRKALGEFYTPQPVVDYIM-------DGVG 433

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            E       L DP CG+G FL +A+    +    ++  P    H Q+L
Sbjct: 434 YERGVSNERLIDPACGSGTFLVEAVERYIEDVEQYEDDPDWKEHLQDL 481


>gi|127418|sp|P22772|MTB3_BACAR RecName: Full=Modification methylase BanIII; Short=M.BanIII;
           AltName: Full=Adenine-specific methyltransferase BanIII
          Length = 580

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 97/279 (34%), Gaps = 27/279 (9%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            I E LI++      +      TP D+  +    L++            IR L DP+CG 
Sbjct: 4   TIEEMLIKQ------KETGAHYTPTDLGDIIAKRLINELKKSGISGTKKIRGL-DPSCGD 56

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQE-LEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           G  L  ++N +A   +   I  I +   +E ++     +   G+   +L +    D+   
Sbjct: 57  GELLL-SLNRIAKFNNIDNIELIGIDEDKEAIKEADFRLNEMGINDAKLTAGDFLDMVDL 115

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
               S    DL   +     ++NPP+ +      D  +K  K   L            G 
Sbjct: 116 EGNLSLFDDDLSKIEPVDLIIANPPYVRTQVLGADRAQKLAKLFNL-----------KGR 164

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP- 394
           +         + L    GG   ++ S+  L N    S    IR++L EN  I  I+ L  
Sbjct: 165 VDLYHAFLVAMTLQLKPGGLIGVITSNKYLANSSGES----IRQFLAENYDIIEIMDLGD 220

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           T LF    +         +K  +   +    N   ++  
Sbjct: 221 TKLFSAAVLQA--IFFGRKKVNKGIRQTAPANFYKIYEE 257


>gi|210616747|ref|ZP_03291211.1| hypothetical protein CLONEX_03432 [Clostridium nexile DSM 1787]
 gi|210149669|gb|EEA80678.1| hypothetical protein CLONEX_03432 [Clostridium nexile DSM 1787]
          Length = 269

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 74/254 (29%), Gaps = 34/254 (13%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
             +     +        I  +  N +  F    F+  ++ +E+                 
Sbjct: 44  CWNHEQKDSREQEYLRIIQKYQRNEQEKFSKM-FAMVVSGMERNP--------------- 87

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++  IY  L              F TP  +  L   + ++  + +        
Sbjct: 88  ----EKDLLGEIYMQL-----RISDNQKGQFFTPYPISKLMAEITIEEKEDISAP----- 133

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             L +P CG+G  +  A N + + G  ++     +   Q+++     +C   M +     
Sbjct: 134 FLLNEPACGSGVNVIAAANTMKERGIDYQRNAYFI--AQDIDSLVAKMCYIQMSLMGCPG 191

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +          +  +T   + + +      K  ++D   +EKE  + E      
Sbjct: 192 VVIIGDTLVGNIED--MEKWYTPFHYIFGVGVLYRHKMKQRDIQVLEKEKISSEEDVPVY 249

Query: 327 GLPKISDGSMLFLM 340
                 +  + +L 
Sbjct: 250 VQHTYENEELEWLF 263


>gi|308185103|ref|YP_003929236.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308061023|gb|ADO02919.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 844

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 87/244 (35%), Gaps = 26/244 (10%)

Query: 42  RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRN 98
           + L+ AL   +  + V   +  F     +  SF   +       T    ++ L     + 
Sbjct: 173 KYLKDALITYQKDTHVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFIAKLNHPFEKI 232

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD-R 153
           +L++  +S S N   I E  DF   +  +++   LL +I    + +++     D   D  
Sbjct: 233 DLDNVRSSISKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLNDDKD 292

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT----- 208
              + YE  +  +  ++ E    + TP  VV      L       FK++P  +++     
Sbjct: 293 PYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTRFKDAPLGLKSALDNE 352

Query: 209 ---LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHAVC 255
              L D   GTG FL +A     +              K   +L   +G E     +A+ 
Sbjct: 353 NIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIA 412

Query: 256 VAGM 259
              +
Sbjct: 413 HLNL 416


>gi|153938955|ref|YP_001392368.1| modification methylase family protein [Clostridium botulinum F str.
           Langeland]
 gi|152934851|gb|ABS40349.1| modification methylase family protein [Clostridium botulinum F str.
           Langeland]
 gi|295320359|gb|ADG00737.1| modification methylase family protein [Clostridium botulinum F str.
           230613]
          Length = 577

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/503 (13%), Positives = 151/503 (30%), Gaps = 94/503 (18%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y  LI+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYELIK-----GKKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------KIPPI 239
           +          + DP+CG G  L     ++ +    +                  K    
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G +++     + +  +               N ++   L +D+     F   + NP
Sbjct: 137 NNLYGFDIDTIAIKILMMDLF-----YLTGYYNKNNFKKKDFLIEDINNN--FDIYIGNP 189

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+         +V+KE+     G++G       D S  F ++  N      N   +   +
Sbjct: 190 PYVGH-----KSVDKEYSMLLKGKYGYVYKDKGDISYCFFINALNY----SNINSKITFI 240

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNR 413
            S   + +    +    +R++L EN  I  I+      F+         I   +  +   
Sbjct: 241 TSRYFMESKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291

Query: 414 KTEE-------RRGKV---QLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSR 459
            + +       R  KV      N  D +        + +    ++ DD  R I++   ++
Sbjct: 292 ISNKVEIIKPCRYEKVKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDGSRDIINKIENK 351

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            N     +            ++     +FI+D+  +          K   L +S     +
Sbjct: 352 TNKTLGEICT------SYQGIITGCDKAFIVDEKTI----------KKENLERSIIKPWI 395

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           K          + +SF+  S      K          I+  I  +  K            
Sbjct: 396 KSSYINREKINFRDSFIIYSDLIENVKKY------PNIIRHIEKYKDKLENRRECKKKVR 449

Query: 580 EWIPDTNLTEYENVPYLESIQDY 602
           +W       +++     + I  Y
Sbjct: 450 KWYELQWGRKFDIFEDKKIIFPY 472


>gi|237723835|ref|ZP_04554316.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437850|gb|EEO47927.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 241

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 63/192 (32%), Gaps = 27/192 (14%)

Query: 106 SFSDNAKAIFEDF-----------DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +FS   +  F DF             +    R+EK    Y+  + F  +  +  +     
Sbjct: 14  AFSRGYEEAFRDFLDVCLYYLSVGMLAEDYRRVEKRYKPYE-MELFVQM-FYKVSEYSEG 71

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++   +     S  +     F TP  V  L   +           S    + + D  C
Sbjct: 72  FCDVLGDMFMECVSHGNN--GQFFTPIHVAGLMACM--------GGNSLKPKQLVCDSCC 121

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A+   A+     +    L  +G +++     + V  +++  +  +     + 
Sbjct: 122 GSGRMLLSAVKKCAEENDGGR----LFCYGSDIDLICVKMTVVNLMMNSVPGEVAWMNTL 177

Query: 275 NIQQGSTLSKDL 286
            +Q   +   DL
Sbjct: 178 TMQHWRSYHIDL 189


>gi|330824404|ref|YP_004387707.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|329309776|gb|AEB84191.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 987

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 102/309 (33%), Gaps = 53/309 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMI 206
           D +P  ++S+IYE           +  E          L   +L+LD             
Sbjct: 275 DVIPVELISSIYEQFAHAEPQTGGKRTEALRNGVHYTRLSVVSLVLDEVMDGLSGR---- 330

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAG 258
            ++ D TCG+G FL +A+  +    S  + P             +G ++      V    
Sbjct: 331 ESVLDLTCGSGVFLVEALRRLVHLRSQGQPPTRELIRSTLYGQVYGVDISEAAIRVAAFS 390

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---------------------KRFHYCLS 297
           + +  LE DP     ++++    + + L  G                     K+F   + 
Sbjct: 391 LYLAALELDPDPQPPQSLKFQPLIGRTLLVGDARTVERDGDGKAVLATPTGLKQFDLIVG 450

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  + +   +A               G+P    G  L  +  A +        G   
Sbjct: 451 NPPWSFRGQTGTEA--------RRKTRVAGVPAQPRGEGLDFVLRAAEFSHEKTRFGIIL 502

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD----LFFRTNIATYLWILSNR 413
             +     F  R+G+G +  +  +     I  +V L ++    LF    +   +   +  
Sbjct: 503 SAMP----FFSRSGTGMAAAQHVMRAVAPI-TLVNL-SNLCSWLFATAAMPAVVLF-ARH 555

Query: 414 KTEERRGKV 422
           + ++R  +V
Sbjct: 556 RPKQRTDQV 564


>gi|293397480|ref|ZP_06641732.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291420059|gb|EFE93336.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 265

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           TI R EKA    ++ + +S + +  D      + +++  L        S+    F TP  
Sbjct: 99  TIQRYEKADAQ-RMAELYSWLVIGLDHDMGDFLGSLFMEL-----ELGSDNIGQFFTPFH 152

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +  L   L+     A  +  P +  TL +PTCG GG +      +   G  +     L  
Sbjct: 153 LSELMAGLVAGDRLAALESEPYI--TLSEPTCGAGGMVIAFAKIMLARG--YNPQTQLRA 208

Query: 243 HGQELEPETHAVCVAGMLIRRL 264
              +++P    +C   + +  +
Sbjct: 209 DCVDIDPVAARMCYIQLSLLGI 230


>gi|300779250|ref|ZP_07089108.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504760|gb|EFK35900.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
          Length = 1702

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 140/453 (30%), Gaps = 72/453 (15%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFK 200
            I LHP+      + NI         ++   G  +++ T   +V     L+ D      +
Sbjct: 289 KITLHPNVEISDDVKNICNQYKSGGTAKEGRGILDEYYTDSKIVEAIRNLIKD------Q 342

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                  +  +P+ GTG FL    +          +   +     E+   T  +      
Sbjct: 343 FKNQKEISALEPSVGTGSFLYAIKD----------LSVKINVTAFEINDTTAKIAKIFHP 392

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
              +          N +   T + D    +++   + NPP+G+     K   E+      
Sbjct: 393 EADINLRSFETEFINEKGQKTDANDY--NEKYDLVIGNPPYGEHRGLYKGLGEE------ 444

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                   PKIS     F     + L+L     G  A+VL S  L            R+ 
Sbjct: 445 --------PKISKYEDYFFKRSLDSLKL----NGVLAMVLPSGWLN-----------RQK 481

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            LEN  I     LP+  F  T I T + IL     +         + +D +         
Sbjct: 482 KLENVEIMKAYRLPSGAFAGTQIETDIIILKKSSVKITE------DISDYFEK-----NP 530

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
             I+ +          + +++ +F RM  Y   G     +    R+    +   +  L  
Sbjct: 531 ENILGE----------IRKKSNRFGRMEQY-VHGNLDNALHILHRLQNKNETERIGNLFE 579

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           D       P +++   D  K  +      G A + V + I    +   ++K     IV  
Sbjct: 580 DFIPENTEPENKNTVND--KTEIDNETESGVALNDVTDKITEVLSSLKEIKFKSPAIVKE 637

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
           I  + +   + +                + E +
Sbjct: 638 IEKYSKLKEQIEKDAQSFNSKELKEVFDKSEKI 670


>gi|223938587|ref|ZP_03630478.1| N-6 DNA methylase [bacterium Ellin514]
 gi|223892706|gb|EEF59176.1| N-6 DNA methylase [bacterium Ellin514]
          Length = 540

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 59/260 (22%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +  ++      TP+ +  L    ++                + DP  G GG L +     
Sbjct: 36  NGETKSFGQVATPQAIAELMARWVMSKKP----------EAVLDPAAGLGGLLHEC---- 81

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  +    +   G E + +T              S P            T +    
Sbjct: 82  ------RRFDQQVSLIGVERDQQTLNQAK--------NSAPSGTKLIFADYLMTKTG--- 124

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +F   ++NPP+ K    D    E   ++ E   FG  L ++++   LFL+ +   L 
Sbjct: 125 ---QFPGIIANPPYVKAHRLDYS--EDVWRSFEQC-FGTRLDRLTNLYALFLLKIWEDLA 178

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--------DLFF 399
                 GRAA++L +  L    A  GE EI++ L+E      ++  P         +LF 
Sbjct: 179 PQ----GRAAVLLPAEFL---NANFGE-EIKQHLIE------VIRPPGIIVFEPGLNLFP 224

Query: 400 RTNIATYLWILSNRKTEERR 419
                + +  L  + ++  R
Sbjct: 225 DALTTSAIVFLEKKHSKTSR 244


>gi|168217355|ref|ZP_02642980.1| N-6 DNA methylase [Clostridium perfringens NCTC 8239]
 gi|182380622|gb|EDT78101.1| N-6 DNA methylase [Clostridium perfringens NCTC 8239]
          Length = 494

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP+ V       ++D          G  +TL+DP CG                
Sbjct: 23  REIGYYATPQFVARYIGKRIID--------INGKGKTLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++ R +  K        S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + + +  K+ +      GL  +            + +     
Sbjct: 109 YDYYIANPPYNC---HEVNFIRENKKSLKNYFNEVGLHNM-------YSMFMSAIIDKAK 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSFF----TAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  + +
Sbjct: 215 LRKGKEYQEK 224


>gi|270265410|ref|ZP_06193670.1| hypothetical protein SOD_n00300 [Serratia odorifera 4Rx13]
 gi|270040665|gb|EFA13769.1| hypothetical protein SOD_n00300 [Serratia odorifera 4Rx13]
          Length = 279

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 19/214 (8%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
            +  V ++         +     +V     +    +S     S     N      +    
Sbjct: 49  KKEQVNKQENRSTNPRKEFMDTFRVTARYHHRYEVFSDFVKLSACALENAFMKSEAIEAE 108

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
             A         TI R EKA    ++ +  + + +  +      + ++Y  L        
Sbjct: 109 YMA---------TINRYEKAD-AERMAQLLAWLVMGLEQGMCDFLGSLYMEL-----ELG 153

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           S     F TP  +  L   L++   D L +       TL +PTCG GG +      + + 
Sbjct: 154 SANIGQFFTPFTMSELMAQLVIG--DRLAELETSSYITLSEPTCGGGGMVIAFAKQMLER 211

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           G  +     L     +++P    +C   + +  +
Sbjct: 212 G--YNPQTQLRADCVDIDPVAARMCYIQLSLLGI 243


>gi|256960119|ref|ZP_05564290.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis Merz96]
 gi|293388650|ref|ZP_06633144.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|312906911|ref|ZP_07765908.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|256950615|gb|EEU67247.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis Merz96]
 gi|291081967|gb|EFE18930.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|310627165|gb|EFQ10448.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|315032550|gb|EFT44482.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|323480178|gb|ADX79617.1| hypothetical protein EF62_1372 [Enterococcus faecalis 62]
          Length = 252

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E      +I          K  + F+ +    +     ++  +Y  L        ++ A 
Sbjct: 48  EREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGELYMAL-----EIANKDAG 102

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  L   +  +  D   K    ++   YDP  G G  L    N + + G  + 
Sbjct: 103 QFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGGVTLIALANIMREKG--YN 158

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
               L     +++    ++      +  +++   R  + + +
Sbjct: 159 YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNALSNE 200


>gi|28867279|ref|NP_789898.1| helicase domain-containing protein [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28850513|gb|AAO53593.1| helicase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 1636

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 92/335 (27%), Gaps = 53/335 (15%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCG 215
             +Y+   R    +++E      TP +VV      +       F ++       + DP  G
Sbjct: 866  ELYDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVNHLLQQEFGQTLGSKGVHIIDPFTG 925

Query: 216  TGGF---LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESD--- 267
            TG F   L  +     +   H     I   H  EL    + +    +         D   
Sbjct: 926  TGTFITRLIQSGLIKPEELPHKYKHEI---HANELVLLAYYIAAINIEAAYHGEVIDGYT 982

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFH--------------YCLSNPPF--GKKWEKDKDA 311
            P   +            DL                       + NPP+  G+K E D +A
Sbjct: 983  PFEGICLTDTFQMYEKDDLVDALLVDNSARRKRQKNLDIRVIVGNPPYSEGQKSENDNNA 1042

Query: 312  VEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 K     R          +S G     +             G    V ++  L   
Sbjct: 1043 NLGYPKLDSQIRSTYARQSAATLSKGLYNSYIRAIRWASDRLGESGIVGFVTNAGFLEAR 1102

Query: 369  RAGSGESEIRRWLLENDLIEAIVAL----------------PTDLF-FRTNIATYLWILS 411
             A      +R+ L E      I  L                   +F   +  A  ++ L 
Sbjct: 1103 FADG----MRKCLAEEFSNIYIFHLRGLRGKHTSGERAKQEGGQIFGMGSGTAICIFFLV 1158

Query: 412  NRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
                 ERRG +   ++ + +     +  K + + D
Sbjct: 1159 KNTDSERRGNIYF-HSIEEYLDRDQKLAKLKELQD 1192


>gi|257080660|ref|ZP_05575021.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis E1Sol]
 gi|256988690|gb|EEU75992.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis E1Sol]
          Length = 251

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 11/184 (5%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             T+ +  S    F        E    S      E+    +   K F+ +    +     
Sbjct: 27  DFTKMSACSISNVFDKVHFEEREKLYLSIQEKYTEEEQEKFH--KLFALLVEALEETTTD 84

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +Y  L        ++ A  F TP +V  L   +    +D   K    ++   Y+P 
Sbjct: 85  ILGELYMTL-----EIANKDAGQFFTPYNVARLMAEMNFSENDEQLKNGKPVV--FYEPC 137

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G  L    N + + G +++   ++   G +++    ++      +  +++   R  +
Sbjct: 138 IGGGVTLIALANVMREKGYNYQ-RNLIALCG-DIDGNVLSMAYVQCSLLGIDAIFERKNA 195

Query: 274 KNIQ 277
            + +
Sbjct: 196 LSNE 199


>gi|296161826|ref|ZP_06844628.1| N-6 DNA methylase [Burkholderia sp. Ch1-1]
 gi|295887990|gb|EFG67806.1| N-6 DNA methylase [Burkholderia sp. Ch1-1]
          Length = 72

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 16/35 (45%)

Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL 44
           +   +W  A+ L  +    ++ +++L    L+ +
Sbjct: 5  DMKKTLWATADKLRANMGAAEYKRIVLGLIFLKYI 39


>gi|293383874|ref|ZP_06629780.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|312978834|ref|ZP_07790560.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|291078791|gb|EFE16155.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|311288271|gb|EFQ66827.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
          Length = 251

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E      +I          K  + F+ +    +     ++  +Y  L        ++ A 
Sbjct: 47  EREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGELYMAL-----EIANKDAG 101

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  L   +  +  D   K    ++   YDP  G G  L    N + + G  + 
Sbjct: 102 QFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGGVTLIALANIMREKG--YN 157

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
               L     +++    ++      +  +++   R  + + +
Sbjct: 158 YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNALSNE 199


>gi|293369262|ref|ZP_06615851.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292635646|gb|EFF54149.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 308

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFSGSKDPARHSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|227544177|ref|ZP_03974226.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300908172|ref|ZP_07125638.1| adenine-specific methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185849|gb|EEI65920.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300894599|gb|EFK87955.1| adenine-specific methyltransferase [Lactobacillus reuteri SD2112]
          Length = 277

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 101/282 (35%), Gaps = 40/282 (14%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL+   V   ++  I +    +   + +  A   MTP  +  +   L+            
Sbjct: 7   ELNLQNVKPEIIRQIIQLSFLKVIRKDAIQANHQMTPDTIGLIMAFLI------EKVTKI 60

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I+T++DP  GT   LT  MN +   G        +V +G + + +   V      ++ 
Sbjct: 61  KEIKTVFDPAVGTANLLTTVMNQLKVNGD-----KDIVGYGIDNDEDMLGVASVNTELQH 115

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L         K   Q +  + D+    +    +S+ P G         +++  KN +  R
Sbjct: 116 LN-------VKLYHQDAVTALDI---SQCDLAISDLPIGYY------PLDENAKNYQ-TR 158

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G          ++ HL  +  +     G   + L  S LF  +         +W+  
Sbjct: 159 AKEGHS--------YVHHLLIEQSMNYLKPGAFGVFLVPSSLFQTKESQSFV---KWIQS 207

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL 424
              ++ ++ LP +LF   N    + +L  +  + ++  KV L
Sbjct: 208 VAYLQGLINLPAELFANPNAQKSILLLQRQGGDSKQAVKVLL 249


>gi|196048388|ref|ZP_03115564.1| SNF2 family protein [Bacillus cereus 03BB108]
 gi|196020821|gb|EDX59552.1| SNF2 family protein [Bacillus cereus 03BB108]
          Length = 2366

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 53/216 (24%), Gaps = 51/216 (23%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + DP  GTG F +     +    S          +G E++P T  +      + +
Sbjct: 622 FKGGKVLDPAMGTGNFFSAMPEELKKNAS---------LYGVEIDPLTGNIAKH---LHQ 669

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                     K            F    F   + N PF     KD               
Sbjct: 670 TSEIQVTGFEKTD----------FQKGSFDVIVGNIPFDNFRLKDNSL------------ 707

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                            +   K        G  A + S+  +        +   R  + +
Sbjct: 708 ---------KKDYQIHDYFIKKSLDLVREDGIVAFISSAGTM-----DKRDYSFREEISK 753

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
              +   V LP + F     T + T +     +  E
Sbjct: 754 EAELLGAVRLPNNAFKKIAGTEVTTDILFFQKKSKE 789


>gi|157826495|ref|YP_001495559.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|157801799|gb|ABV78522.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 183

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              +       G+A +V+             +  +R+ +L+N  I+AI++LP   FF T 
Sbjct: 1   MEWIVKALKPNGKAFVVVPDGIFNR----QNDKNLRQLILDNCFIDAIISLPLKTFFTTP 56

Query: 403 IATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             TY+  ++ +    + +   V     +++     +    R  I  D  ++ ++++ + +
Sbjct: 57  KKTYILAITKKHNISQIQTDPVFTYLCSEIGE---SRDIYRFDIEQDDLKEAVNLFNAFK 113

Query: 461 NGK 463
             K
Sbjct: 114 GSK 116


>gi|223932202|ref|ZP_03624206.1| SNF2-related protein [Streptococcus suis 89/1591]
 gi|223899183|gb|EEF65540.1| SNF2-related protein [Streptococcus suis 89/1591]
          Length = 2274

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 61/224 (27%), Gaps = 51/224 (22%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIADN------- 784

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R             +   +   K     + GG+ AI+ S+  +           
Sbjct: 785 ---RYDRP-----------YMIHDYFIKKSLDLVHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           I + + E       V LP   F     T++ T +        +E
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKHLNKE 869


>gi|212705068|ref|ZP_03313196.1| hypothetical protein DESPIG_03137 [Desulfovibrio piger ATCC 29098]
 gi|212671503|gb|EEB31986.1| hypothetical protein DESPIG_03137 [Desulfovibrio piger ATCC 29098]
          Length = 199

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR- 207
           T  +  +  +YE          +     + TP  V  L   +            P   R 
Sbjct: 22  TTNEETLGPLYEEY------AANHYTGQYFTPSSVARLMAKIT-------HTAPPETGRF 68

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            + DP CG G  L  A           +     +  GQ+++     +    ++   L+ 
Sbjct: 69  KVLDPACGAGACLIAAAKE-----QTFEQNGRAIFVGQDIDLNCARMTALNLMFFNLDG 122


>gi|292656402|ref|YP_003536299.1| N-6 adenine-specific DNA methylase domain-containing protein
           [Haloferax volcanii DS2]
 gi|291371511|gb|ADE03738.1| N-6 adenine-specific DNA methylase domain protein [Haloferax
           volcanii DS2]
          Length = 853

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 81/254 (31%), Gaps = 51/254 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP+ +  + T                   ++ D   G+G  L  A  ++   G    
Sbjct: 125 HGYTPQAIAEILT----------GWAITSENDSVLDFATGSGTLLKQAATYLDKEGR--- 171

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKDLFTG 289
                   G E+ P    +  +   +R +++      D     +    +    ++   + 
Sbjct: 172 ------LTGVEIHPFIAKLVKSR--VRGIDNAEIFNEDFFDWRTPEQLELGEETQGEHSS 223

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +++   + NPP       ++     E   G            +             L+  
Sbjct: 224 EKYDAVVGNPPITGFLPPEQREKISEWTQGRRPSLAAAFVAKA----------VTHLK-- 271

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR A VL    L +G        +   L E+  I  IV LP  +F   + +  L +
Sbjct: 272 --DGGRGAFVLPKKALKDG--------LLEQLTESCSIHRIVELPLGVFADAH-SVELVV 320

Query: 410 LSNRKTEERRGKVQ 423
           L+  K EER  +V+
Sbjct: 321 LTMVK-EERDPQVK 333


>gi|258649030|ref|ZP_05736499.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260850656|gb|EEX70525.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2114

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 128/426 (30%), Gaps = 75/426 (17%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFARQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +                +      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGEGNIFVQNEPFEAIGELEDKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  ++           GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHNYFFVKGLNCIK-------EGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINA 427
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E          
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE---------- 305

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--------DYRTFGYRRIK 479
                           I++   +Q ++     +    S +         D++   +R I 
Sbjct: 306 ----------------ISEGIEQQFVETVSVAKEEGSSVVFKHNSLFVGDWKDISHRTIA 349

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG-WAESFVKE 538
             R +            R    I       L     L++ + + +++Y  G        +
Sbjct: 350 TERIMGTDPYGRPAWEYRFTGGIE-EMAESLRTQLSLEMGQRIDRKLYETGIPMTKEEWQ 408

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA-DPVTDVNGEWIPDTNLTEYENVPYLE 597
              +   + L V          +      D  A + + D   + +P    TE E +    
Sbjct: 409 VRVNEMLQKLGVTVQAEGKPQMLEIKEEDDTDAHNLMPDSIRKQLPKLYSTEKELIGDKV 468

Query: 598 SIQDYF 603
           +   YF
Sbjct: 469 AYARYF 474


>gi|300777361|ref|ZP_07087219.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300502871|gb|EFK34011.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1815

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 90/281 (32%), Gaps = 57/281 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V+   ++ L        +++   I    +P+ G G F   + +           
Sbjct: 105 FYTPPKVIDAISSAL--------RDNGLHIDKFLEPSAGIGSF-IQSFSENQKASVTAYE 155

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L   G+ L+     +    + I   E  P R+ +                  +    
Sbjct: 156 KDLLT--GKILKQLYPEI---NIRINGFEEIPEREQN-----------------TYDVIA 193

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +  +              I +   L    +          GG  
Sbjct: 194 SNIPFG-----DTSVFDLSYSRSRNSAKEQAARSIHNYFFLKGADMLR-------EGGLL 241

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IRR L++++ + ++V LP +LF     T + + L IL   
Sbjct: 242 AYITSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKN 297

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKR--RIINDDQRRQI 452
             +E      L +  DL+   +          +  D  R I
Sbjct: 298 TAKEN-----LTDREDLFCQSKPSEYNMPGNALFQDSTRII 333


>gi|307638029|gb|ADN80479.1| Adenine specific DNA methyltransferase [Helicobacter pylori 908]
          Length = 833

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 29/247 (11%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN------TSEYSLSTLGSTN 95
           + L+ AL   +   ++  ++    N     + +++   F +      T    ++ L    
Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFIAKLNHPF 236

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVP 151
            + +L +  +S   N   I E  DF   +  +++   LL +I    + +++     D   
Sbjct: 237 EKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLND 296

Query: 152 D-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-- 208
           D     + YE  +  +  ++ E    + TP  VV      L    +  FK++P  +++  
Sbjct: 297 DKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSAL 356

Query: 209 ------LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETH 252
                 L D   GTG FL +A     +              K   +L   +G E     +
Sbjct: 357 DNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPY 416

Query: 253 AVCVAGM 259
           A+    +
Sbjct: 417 AIAHLNL 423


>gi|253699431|ref|YP_003020620.1| hypothetical protein GM21_0788 [Geobacter sp. M21]
 gi|251774281|gb|ACT16862.1| hypothetical protein GM21_0788 [Geobacter sp. M21]
          Length = 93

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
          +  +  N++W  A  + G          I P  ++RR+        + + E +L    + 
Sbjct: 10 NITTQVNWLWDAACSIRGAVGALKQKDYIQPLIVIRRISDV-GGEIAHLAEDFLDEEAAQ 68

Query: 67 IDLESFVKVAGYSFY--NTSEYSLS 89
             E+  K+  +        E+  +
Sbjct: 69 GIAEADRKLIRFWVPCLLPYEWRAA 93


>gi|315171663|gb|EFU15680.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
          Length = 251

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E      +I          K  + F+ +    +     ++  +Y  L        ++ A 
Sbjct: 47  EREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGELYMAL-----EIANKDAG 101

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  L   +  +  D   K    ++   YDP  G G  L    N + + G  + 
Sbjct: 102 QFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGGVTLIALANIMREKG--YN 157

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
               L     +++    ++      +  +++   R  + + +
Sbjct: 158 YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNALSNE 199


>gi|271968783|ref|YP_003342979.1| hypothetical protein Sros_7557 [Streptosporangium roseum DSM 43021]
 gi|270511958|gb|ACZ90236.1| hypothetical protein Sros_7557 [Streptosporangium roseum DSM 43021]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            G  A ++  +  L +   G+ E+++R  LL + ++EA+V LP  +  +R      LW+L
Sbjct: 329 PGCTALVLGPADALVDALPGTEEAQLRSGLLRSGVVEAVVNLPGGVTPYRPGYRCALWVL 388

Query: 411 SNRKTEERRGKVQLINATD--LWTSIRNEGKKRRII--NDDQRRQILDIYVSRENGKFSR 466
           +    +  RG V L + +D  L   +R    +  ++   +  RR+         + ++ R
Sbjct: 389 TRDPVDAARGYVLLADISDESLSEQVRTRLAEDVLLWRAEGHRRE------DGHDPRYGR 442

Query: 467 MLDYRT 472
           ++  + 
Sbjct: 443 IVSVKR 448


>gi|10954534|ref|NP_044172.1| hypothetical protein MJECS02 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496196|sp|Q60301|Y3402_METJA RecName: Full=Uncharacterized adenine-specific methylase MJECS02
 gi|1522636|gb|AAC37060.1| hypothetical protein MJ_ECS02 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 1181

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 94/319 (29%), Gaps = 62/319 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ LE      R  +R  Y  +  SN+ +  +       FY     +       N R
Sbjct: 297 LIFIKFLEDKGIVPRDLLRRTYEDYKKSNVLINYYDAYLKPLFYEV-LNTPEDERKENIR 355

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF--------------SGI 143
            N   Y          +F   +  + ++   K   +     NF                +
Sbjct: 356 TN--PYYKDIPYLNGGLFRSNNVPNELSFTIKDNEIIGEVINFLERYKFTLSTSEGSEEV 413

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP--------- 194
           EL+PD     ++  +YE LI     +  +G   + TP ++        ++P         
Sbjct: 414 ELNPD-----ILGYVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNTIEPIVVERFKEI 468

Query: 195 -------------------DDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNH 226
                              +D+   E+  ++R          + DP  G+G FL  A+  
Sbjct: 469 IKNWKINDINFSTLDEILNEDSKIAENKHILRAFLDELDKIRILDPAVGSGHFLISALKE 528

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +            L+    ++  E   + +  +    ++          +      + D+
Sbjct: 529 LLQIKKRIYY---LLREEMDIYKEKLGIILNNLYGVDIDDIAVEIAKLRLWLALIENLDV 585

Query: 287 FTGKRFHYCLSNPPFGKKW 305
              KR    L N  +  + 
Sbjct: 586 EALKRGEVLLPNIEYNVRC 604



 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 35/280 (12%)

Query: 288  TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              + F   + NPP+G      +  + K     E   F              +  + +  +
Sbjct: 754  KEEGFDVIIGNPPYGNLLSPTEKEIMKRRDTPEFDIF--------------VTFIVHSSK 799

Query: 348  LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
            L  N  G    ++ SS       G   S +R+ L     ++ ++ LP D+F    +   +
Sbjct: 800  LLKN-EGYLGFIIPSSF----GTGVRYSNLRKELFTKMCLKKLIYLPFDVFSGAYVDNCI 854

Query: 408  WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
             IL  +  +           ++    I    KK + I+ + +  +   Y    N    R+
Sbjct: 855  IILHKKPPK-----------SEDLVLIYAFPKKTKKISFEFKNDLFIEYSKILNDPKCRI 903

Query: 468  LDYRTFGY---RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   Y    +IK      ++++ D T          ++        ++L  L+  + 
Sbjct: 904  FPKSPEIYIILDKIKQNCRESLTYLEDLTESTIGILASKYKFSDKKENEYYLPYLEGNVY 963

Query: 525  QIYPYGWAESFVKESIKSNEAKTLKVKAS--KSFIVAFIN 562
            +       +++V  S   N  K + +  S  K FI   +N
Sbjct: 964  RYETKLKLKNYVDFSKHKNNEKLINLFMSPEKIFIRRIVN 1003


>gi|189467033|ref|ZP_03015818.1| hypothetical protein BACINT_03415 [Bacteroides intestinalis DSM
           17393]
 gi|189435297|gb|EDV04282.1| hypothetical protein BACINT_03415 [Bacteroides intestinalis DSM
           17393]
          Length = 1053

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 83/261 (31%), Gaps = 52/261 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++V                E   +   L DP+ G G F++               
Sbjct: 105 FYTPPEIVSAIA--------GTLHEQGIIPDRLLDPSAGQGVFISAFGADAPGAEVMAFD 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++  L  +      K   +G    +  F G  F    
Sbjct: 157 KDLLT----------------GKILSHLYPE-----HKVRAEGFERIEKPFMG-TFDVVA 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E+              I +   L       K       GG  
Sbjct: 195 SNIPFG-----DMAVFDPEYTGVPDNARRTAAKSIHNYFFL-------KGLDAAREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L    +   E  +RR +++N  I ++V LP +LF     T + + L IL   
Sbjct: 243 AFITSEGVL---NSPKNEL-VRRHIVKNANIVSVVRLPNNLFTDHAGTEVGSDLVILQKD 298

Query: 414 KTEERRGKVQ---LINATDLW 431
            T+ R    Q    I ATD+ 
Sbjct: 299 TTKNRELSEQEKWFIRATDIG 319


>gi|291037371|ref|ZP_06568335.1| DNA helicase restriction enzyme Type III R subunit [Gluconacetobacter
            xylinus NBRC 3288]
          Length = 1737

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/420 (12%), Positives = 117/420 (27%), Gaps = 61/420 (14%)

Query: 69   LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
             +  +++          +     G +   +N        S   + + +  D  S     +
Sbjct: 782  EDEVIEMLAQHLITRPVFEALFSGHSFIGDNPM------SRAMQTVLDALDRHSLHKETD 835

Query: 129  KAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +    Y    +  SGI+         V+  +Y+   ++    + +      TP +VV   
Sbjct: 836  RLEAFYTSVRERASGIDTSYGRQK--VIKELYDGFFQKAFPRLKDRLGIVYTPIEVVDFI 893

Query: 188  TALLLDPDDALFKESP-GMIRTLYDPTCGTGGF---LTDAMNHVADCGSHHKIPPILVPH 243
               + D  +  F ++       + DP  GTG F   L  +     +   H         H
Sbjct: 894  IRSINDVLENEFGQTLGSKGVHIMDPFTGTGTFITRLLQSGLITKEQMLHKYRQE---LH 950

Query: 244  GQELEPETHAVCVAGM------LIRR----LESDPRRDLSKNIQQGSTLSKDLFTG---- 289
              E+    + +    +      L+       E     D  +  +    +S  L       
Sbjct: 951  ANEIVLLAYYIASINIEASFSDLMDGTYEPFEGICLTDTFRLNEPHDLVSSTLEDNNRRI 1010

Query: 290  ---KRFH--YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFL 339
               K+      + NPP+    E   D  +         R      + S  +         
Sbjct: 1011 RKQKKLDIRVIMGNPPYSVGQESGNDNNQNVTYPTLDTRIAKTYAERSSATNKRALYDSY 1070

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTD-- 396
            +             G    V ++  L    A      +R+ L E    I  +  L  +  
Sbjct: 1071 IRAIRWSSDRIGDCGVIGFVTNAGFLDANTANG----LRQCLAEEFSSIH-VFHLRGNQR 1125

Query: 397  ------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
                        +F   +     + ++      + +G++   +  D  T  +   + + +
Sbjct: 1126 TSGETSRKEGGKIFDAGSRAPIAISLMVKNPNAKEQGRILFHDIGDYLTREQKLKRIQEL 1185


>gi|256964526|ref|ZP_05568697.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
 gi|256955022|gb|EEU71654.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
          Length = 252

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E      +I          K  + F+ +    +     ++  +Y  L        ++ A 
Sbjct: 48  EREKLYKSIQEKYTEEEQEKFHELFALLVEALEENSTDILGELYMAL-----EIANKDAG 102

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  L   +  +  D   K    ++   YDP  G G  L    N + + G  + 
Sbjct: 103 QFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGGVTLIALANIMREKG--YN 158

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
               L     +++    ++      +  +++   R  + + +
Sbjct: 159 YQRSLKALCGDIDGNVLSMAYVQCSLLGIDAIFERKNALSNE 200


>gi|255656742|ref|ZP_05402151.1| putative DNA modification methylase [Clostridium difficile
           QCD-23m63]
          Length = 577

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 58/355 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +   +  + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P 
Sbjct: 1   MDDISQDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP- 56

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------------------HGQ 245
               + D +CG G FL +  + + D    +                           +G 
Sbjct: 57  ---RILDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHSHILNYCIYGA 113

Query: 246 ELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +++ +  ++    ++ +++ +D    D+  N+    +L K      +F Y + NPP+   
Sbjct: 114 DIDEKAISILKDSLINKKVVNDLDESDIKINLFCCDSLKKKWRY--KFDYIVGNPPYIGH 171

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +K   +   +                  +        K+      GG  +++     
Sbjct: 172 KKLEKKYKKFLLEK-------YSEVYKDKADL--YFCFYKKIIDILKQGGIGSVITPRYF 222

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           L +        ++R ++  N  ++ IV  L  ++F    +++ +     +KT++    V 
Sbjct: 223 LESLSG----KDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKKTYIDVF 278

Query: 424 LINATDLWT-------------SIRNEGKKRRIINDDQR--RQILDIYVSRENGK 463
            I   D+                  +    +R+++D+     +  + + ++   K
Sbjct: 279 KIKNEDICINKFETLEELLKSSKFEHFNINQRLLSDEWILVNKEDETFYNKIQEK 333


>gi|313667119|gb|ADR73009.1| M.BsgI [Lysinibacillus sphaericus]
          Length = 569

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 108/368 (29%), Gaps = 68/368 (18%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
            E   S           +    +++++        TS+     +       N    I   
Sbjct: 11  FEVNFSNAFSHEEIGKNAFNKYKNYIENIKPRNIYTSKLD---IIERYKLENFLINITLS 67

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR 165
               K      D  S I  + +        +   F  I++  +    + + +  E     
Sbjct: 68  YLELKYRISRLDIISNIKEIIEYYPFQMHSEYYGFIDIDVKENKDFKKWLKDSLEDF--- 124

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F         ++ TP  ++ L          +           + DP CG+G F+ + + 
Sbjct: 125 FKEVDQREYGEYYTPEKLIRL----------SFQNLEMDTNNKVVDPACGSGFFILEYLE 174

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVA---------------------GMLIRRL 264
            + +             +G ++ P +  +                         +++   
Sbjct: 175 ELQNRKLLDIDTIKNNIYGFDIFPFSIIMSKLLIGEFFVKSKKSFSGKEFYFENIILHNT 234

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            S  +   + N            T   F   + NPPF +        +E + KNG     
Sbjct: 235 VSSLQCKNNDNRI----------TNLEFDLIIGNPPFFR--------IEPDDKNGICDCV 276

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G    +    +F+      L+      G++ + L  S L    +G    ++R+ ++E 
Sbjct: 277 SYGH---NYIQSIFVHWAIQHLKT----NGKSVLFLPQSML----SGFYYQKLRQEIMEK 325

Query: 385 DLIEAIVA 392
             +E I++
Sbjct: 326 CRLELIIS 333


>gi|94267948|ref|ZP_01291043.1| hypothetical protein MldDRAFT_2387 [delta proteobacterium MLMS-1]
 gi|93451793|gb|EAT02548.1| hypothetical protein MldDRAFT_2387 [delta proteobacterium MLMS-1]
          Length = 204

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRR 263
             L DP CGTGGFL  A +H+ +     +    L      G ++  E   +C   + +  
Sbjct: 116 NKLSDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHG 175

Query: 264 LES 266
           L +
Sbjct: 176 LGN 178


>gi|329849646|ref|ZP_08264492.1| endonuclease and methylase LlaGI [Asticcacaulis biprosthecum C19]
 gi|328841557|gb|EGF91127.1| endonuclease and methylase LlaGI [Asticcacaulis biprosthecum C19]
          Length = 1015

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 88/324 (27%), Gaps = 51/324 (15%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +  ++   +     +  +YE+  + +  + ++      TP ++V              F 
Sbjct: 269 NAAQITSHSEKQTFLKVVYENFYKVYNPKAADRLGVVYTPNEIVRFMIEGTDWLTKKHFD 328

Query: 201 ES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           +        + DP  GTG F+ + + H                H  E+    + V    +
Sbjct: 329 KHLIDRDVQILDPATGTGTFICELIEHFRGQPEKLAHKYKEELHANEVAILPYYVANLNI 388

Query: 260 --------------------------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                                         + S  + DL   I   +         +   
Sbjct: 389 EATYAAISGQFSEFPSLCFVDTLDNVAGLGIYSGFQHDLFGAIADENVARIKRQNQRSIS 448

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELP 349
             + NPP+    + + D  +         R      + S      L  +  +        
Sbjct: 449 VIIGNPPYNANQQNENDNNKNRTYARIDERIKETYIRQSTAQKTKLYDMYARFFRWASDR 508

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-------------D 396
            N  G   ++ + S + +          R+ + E      +V L               +
Sbjct: 509 LNRDGVLCMITNRSFIDSRTFDG----FRKVVAEEFNEIYVVDLGGDVRANPKLSGTKHN 564

Query: 397 LFFRTNIATYLWILSNRKTEERRG 420
           +F    I T + I    K  +++G
Sbjct: 565 VF---GIQTGVAISFFVKRHKQKG 585


>gi|282851934|ref|ZP_06261294.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282556943|gb|EFB62545.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 480

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 23/133 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +++  D+    +M ++Y   + ++           +TP  +  L    +          +
Sbjct: 331 LQIDADSGSLDIMGSMYSEFL-KYALGDGGSLGKVLTPPYITDLMAKAI----------N 379

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQELEPE 250
             M   + D   G+G FL  +M  + D                 +        G E + +
Sbjct: 380 VSMNDRVMDLATGSGAFLVSSMKLMIDDANDTYGINSELANKKIRQIKKSQLLGVEYDAK 439

Query: 251 THAVCVAGMLIRR 263
            + +  + M++R 
Sbjct: 440 MYTLAASNMILRG 452


>gi|296452429|ref|ZP_06894130.1| modification methylase bstVI [Clostridium difficile NAP08]
 gi|296877778|ref|ZP_06901804.1| modification methylase bstVI [Clostridium difficile NAP07]
 gi|296258759|gb|EFH05653.1| modification methylase bstVI [Clostridium difficile NAP08]
 gi|296431229|gb|EFH17050.1| modification methylase bstVI [Clostridium difficile NAP07]
          Length = 577

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 58/355 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +   +  + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P 
Sbjct: 1   MDDISQDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP- 56

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------------------HGQ 245
               + D +CG G FL +  + + D    +                           +G 
Sbjct: 57  ---RILDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHSHILNYCIYGA 113

Query: 246 ELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +++ +  ++    ++ +++ +D    D+  N+    +L K      +F Y + NPP+   
Sbjct: 114 DIDEKAISILKDSLINKKVVNDLDESDIKINLFCCDSLKKKWRY--KFDYIVGNPPYIGH 171

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +K   +   +                  +        K+      GG  +++     
Sbjct: 172 KKLEKKYKKFLLEK-------YSEVYKDKADL--YFCFYKKIIDILKQGGIGSVITPRYF 222

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           L +        ++R ++  N  ++ IV  L  ++F    +++ +     +KT++    V 
Sbjct: 223 LESLSG----KDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKKTYIDVF 278

Query: 424 LINATDLWT-------------SIRNEGKKRRIINDDQR--RQILDIYVSRENGK 463
            I   D+                  +    +R+++D+     +  + + ++   K
Sbjct: 279 KIKNEDICINKFEILEELLKSSKFEHFNINQRLLSDEWILVNKEDETFYNKIQEK 333


>gi|229048167|ref|ZP_04193736.1| N-6 DNA methylase [Bacillus cereus AH676]
 gi|228723154|gb|EEL74530.1| N-6 DNA methylase [Bacillus cereus AH676]
          Length = 1037

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 90/718 (12%), Positives = 199/718 (27%), Gaps = 153/718 (21%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
           T +R  E       + ++  Y     S +    F++              + +   NT+N
Sbjct: 255 TFIRFCEANNLLKANTLKSFYEEGKNSKLSSWEFLETL-----------FNYIDKGNTKN 303

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           ++  Y              F   + +  +      +++ + F       D +   ++ +I
Sbjct: 304 DINRYNGGL----------FKEDTVLNNIVIPDKDFEVIEKFFDYNF-KDELTIDILGHI 352

Query: 159 YEHLIRRFGSEVS---------EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-- 207
           +E  I    +            +    F TP  +        +D      K         
Sbjct: 353 FEQSISDIEALKGIKKEEIGSRKANGVFYTPEYITSYIVKDAIDDWIENEKVRLDFNSLT 412

Query: 208 --------------------------------TLYDPTCGTGGFLTDAMNHVADCGSHHK 235
                                            + D  CG+G FL     ++       +
Sbjct: 413 DWKNAKSKSAESRSINRHIEKLKELKDALNNIKILDAACGSGAFLIKVFEYLVQKHKEIQ 472

Query: 236 IPP--------------------------ILVPHGQELEPETHAVCVAGMLIRRLESD-P 268
                                            +G +L  E+  +    + ++   +  P
Sbjct: 473 KEIADLNALRTGGIENNLALDLDMDREILKNNIYGIDLNKESVEITKLSLWLQTANNKKP 532

Query: 269 RRDLSKNIQQGSTLSKD-----------------LFTGKRFHYCLSNPPFGKKWEKDKDA 311
              L  NI  G+++  D                 +     F   + NPP+      D D 
Sbjct: 533 LTTLDDNIIVGNSIVNDEEIAPARVINWEKEFTSVQEKGGFDIIVGNPPYVPIDFLDSDT 592

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            E          F      I        +   +K     N  G  ++++  + L     G
Sbjct: 593 SE---------YFQEEYQDILKNKWDISVIFMHKCVSFLNSSGVLSMIVPRTWL----TG 639

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           +  ++ R        +  I++LP D+F   N+ T ++I +      +  K    N     
Sbjct: 640 ANYTKFREVFSSELNLNKIISLPKDVFPDANVDTCIFIGTKDNPGNKIEK----NYLAYK 695

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFIL 490
             I+ +     +I+DD     +D        K F+ +  Y+ +   ++ +      + + 
Sbjct: 696 YDIKAKISVLNVIDDDMDSIPIDFIKQHHMNKIFTDINSYKLYNKIQVLLKDESNYTQLG 755

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
             T   +   +  +   +     + +  LK      Y      S      +     +  V
Sbjct: 756 SITDSTQGPVESKFEYSTRPITKYHIPYLKDGQGYRYRLNVESSNYINLSEKQTLISYYV 815

Query: 551 KASKSFIVAFI---NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
           K  + +    +   +         D VT         T+   +        I   F  ++
Sbjct: 816 KQPRLYCRRIVNRQDRLMVSYCENDLVTKKELNPFIVTDNRFHIKY-----IYALFNSKL 870

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
             ++   YI+   +  KD                Y+    ++L+++  ++   + QI 
Sbjct: 871 LSYI---YINFSTLALKDD---------------YRQTTLKELRELPIKIINSDKQIQ 910


>gi|27228570|ref|NP_758620.1| hypothetical protein pCAR1_p079 [Pseudomonas resinovorans]
 gi|219856992|ref|YP_002474024.1| hypothetical protein pCAR12_p079 [Pseudomonas sp. CA10]
 gi|26106158|dbj|BAC41598.1| hypothetical protein [Pseudomonas resinovorans]
 gi|219688920|dbj|BAH10011.1| hypothetical protein [Pseudomonas putida]
          Length = 279

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 54/163 (33%), Gaps = 8/163 (4%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +  +   +++  +  + + +  +  PD V+  ++  L        +     F TP  V  
Sbjct: 72  KKYEPSEVHRFPQMLAELTMAMEYGPDDVLGQVFGEL-----ELGNSSRGQFFTPYPVCK 126

Query: 186 LATALLL-DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           L  + L  D  D   +       T+ +P  G G  +      + D G ++     L    
Sbjct: 127 LMASQLFGDGADLRKRLDERGFITVNEPASGAGAMVIAIAEALGDKGFNY--QRCLHVTA 184

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           Q+++     +    + +  + +      +  +++         
Sbjct: 185 QDVDSRAVHMTYLQLSLLHIPAILILGNTLALEERELWYTPAH 227


>gi|94992648|ref|YP_600747.1| superfamily II DNA/RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546156|gb|ABF36203.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 2416

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 74/265 (27%), Gaps = 60/265 (22%)

Query: 153  RVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                 +YE+L    + + +      F TP  V+     +L                 + +
Sbjct: 1183 DEFIELYENLSPEEYRAAMESTLTAFYTPPVVIKAMYEVL--------DRLGYEKGNMLE 1234

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            P+CGTG F           G   +       +G EL+  T  +              ++ 
Sbjct: 1235 PSCGTGNFF----------GLIPEKMAGSKLYGVELDDLTGRIAK---------QLYQKA 1275

Query: 272  LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                     T   D      F   L N PFG                     F     + 
Sbjct: 1276 TIAVQGFEDTKLPDDH----FDVVLGNVPFGD--------------------FRVNDSRY 1311

Query: 332  SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 L   +   K       GG   ++ S   +          E+R+++ +   +   +
Sbjct: 1312 EQQKFLIHDYFFAKALDKVKAGGVVMLLTSKGTMDKASP-----EVRKYIAQRAELLGAI 1366

Query: 392  ALPTDLF---FRTNIATYLWILSNR 413
             LP + F     T + + + IL  R
Sbjct: 1367 RLPDNTFKANAGTEVTSDILILKKR 1391


>gi|323485199|ref|ZP_08090550.1| type I restriction-modification system methyltransferase subunit
           [Clostridium symbiosum WAL-14163]
 gi|323401518|gb|EGA93865.1| type I restriction-modification system methyltransferase subunit
           [Clostridium symbiosum WAL-14163]
          Length = 300

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 71/257 (27%), Gaps = 14/257 (5%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
              T+    +       +   ++   K        T  +    +       +  S     
Sbjct: 35  FGETKKKEVKSPEPVMKAESKIDWEDKFLKSFQQLTYRHRAWDVWRDYILLHACSISNVL 94

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
                   E           ++   ++     ++ + L  +   D  +  ++  L     
Sbjct: 95  DKENYDQREKRYLKIIHQYSKEEQAIFPELAAYTTMALDQNQEQD-FLGKMFMRL----- 148

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +  +     F TP  V  L   ++     AL K       ++ DP CG G  L   ++ +
Sbjct: 149 NLGNRSTGQFFTPYHVCELMAEVVATY--ALEKIEKYGYISINDPCCGAGATLIAGVHVI 206

Query: 228 ADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR--RDLSKNIQQGST 281
                H   P     H     Q+++     +C   + +  L    +    ++  +    +
Sbjct: 207 RKQLEHCDTPRNYQNHILVVAQDVDEIVGLMCYIQISLLGLAGFIKIGNSITDPMSTDDS 266

Query: 282 LSKDLFTGKRFHYCLSN 298
                +T   F    S 
Sbjct: 267 SENYWYTPMYFSDVWST 283


>gi|237751872|ref|ZP_04582352.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376705|gb|EEO26796.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 1935

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 126/417 (30%), Gaps = 74/417 (17%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +          TI +  +     +      FSG    P      ++     
Sbjct: 200 YLGSLKDRFQKNIHAIKLLKTIEQENRYATKQEQEILNRFSGWGGIPQAFDHQNKEWEKE 259

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       + +      + F TP+ V+      +    + L   +    + +++P+
Sbjct: 260 FKELISTLDYTEYENAKLSTLDAFYTPKIVIDT----IYQGLNHLGFNNDKHTKEIFEPS 315

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+               + S+  + L 
Sbjct: 316 AGIGSFLSYAKNY----------SNNYHFTCIELDS--------------ISSNILKSLH 351

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +       +      G  +  + +
Sbjct: 352 PNQTIYNKAFEHHLFDKPYDAFIGNPPFGQKKVLDPNDTTLNKSSVHNYFIGNAIKNLKE 411

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
                               G AA V+SS  L +         IR ++ E       V L
Sbjct: 412 -------------------DGIAAFVVSSYFLDSKNNT-----IRDYIAEQATFLGAVRL 447

Query: 394 PTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           P + F     T + T +      K      K      +  +   R +  ++R +N     
Sbjct: 448 PNNAFKKRANTEVTTDIIFFKKGKDLNIDNKWLE---SVEYYEDRFDEAEKRGLNH---- 500

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              +I+      ++ +       G   IK  +       LD     ++  +   + L
Sbjct: 501 ---NIFSYFRINEYFKNNPQNILGKMDIKSSQYGHDLECLDDGRDLKIALENFVKTL 554


>gi|265753906|ref|ZP_06089261.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235620|gb|EEZ21144.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1032

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          +     A FK++   + T  +P+ G GGFL  +M            
Sbjct: 99  FYTP----KFLVDAVTRQIHATFKDNCLQMSTFLEPSAGIGGFLPVSM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P    +  E +      C+ G+++  L  D    ++   +   T++      + F    
Sbjct: 143 -PGTRSYAFEKD------CLTGLIL-SLLYDEATTVTAGFE---TIADQHLEHESFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAEMWKKGGMYEQSAKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V             G   +R +L+ +  +   + LP  LF +T+   + + L I    
Sbjct: 239 AFVAPRGI----ADTPGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQKH 294


>gi|169342263|ref|ZP_02863343.1| N-6 DNA methylase [Clostridium perfringens C str. JGS1495]
 gi|169299644|gb|EDS81702.1| N-6 DNA methylase [Clostridium perfringens C str. JGS1495]
          Length = 494

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 75/250 (30%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG                
Sbjct: 23  REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++ R +  K        S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + +++  K  +      GL  +            + +     
Sbjct: 109 YDYYIANPPYNC---HEVNFIKENKKRLKNYFNEVGLHNM-------YSMFMSAIIDKAK 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSFF----TAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  + +
Sbjct: 215 LRKGKEYQEK 224


>gi|80159697|ref|YP_398441.1| putative type I site-specific deoxyribonuclease, M subunit
           [Clostridium phage c-st]
 gi|78675287|dbj|BAE47709.1| putative type I site-specific deoxyribonuclease, M subunit
           [Clostridium phage c-st]
          Length = 560

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 87/305 (28%), Gaps = 59/305 (19%)

Query: 119 DFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                   LE      +I KN   GIE   +           E++++++     +    F
Sbjct: 4   KTKGNKGVLESVHYSLEIIKNIKEGIEFSQEHK---------ENILKQYVGLS-KDNNSF 53

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V +    LL                 + D + G G      +          ++ 
Sbjct: 54  FTPIPVCNFICNLL----------DIKENMKVADLSAGIGNMCIPLIKEYG------QLK 97

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +  EL+            +   ++       K      TL+ D+     +   + 
Sbjct: 98  DNITFYMYELDE--------NNSLAGAKAWEDYKQVKYHGNCDTLNHDIPENY-YDCIIG 148

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF        +    + K  +                  +    +K        G  A
Sbjct: 149 NPPFVGSIPYMCEWNNNKGKIKKNQ---------------IVDAFIDKSFKVCKENGYVA 193

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-----TNIATYLWILSN 412
           +VL     F    G+G  ++R +L E   +   + L  D F       T + T L I   
Sbjct: 194 LVLPKGFCFK---GNGTGKLREYLKERYSLLFCMELDQDTFANAGITGTGVGTVLCIFQK 250

Query: 413 RKTEE 417
            K  +
Sbjct: 251 CKQTK 255


>gi|325104318|ref|YP_004273972.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
 gi|324973166|gb|ADY52150.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
          Length = 1812

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 50/245 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V+   ++ L        +++   I    +P+ G G F   + +           
Sbjct: 105 FYTPPKVIDAISSAL--------RDNGLHIDKFLEPSAGIGSF-IQSFSENQKASVTAYE 155

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L   G+ L+     +    + I   E  P R+ +                  +    
Sbjct: 156 KDLLT--GKILKQLYPEI---NIRINGFEEIPEREQN-----------------TYDVIA 193

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +  +              I +   L    +          GG  
Sbjct: 194 SNIPFG-----DTSVFDLSYSRSRNSAKEQAARSIHNYFFLKGADMLR-------EGGLL 241

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IRR L++++ + ++V LP +LF     T + + L IL   
Sbjct: 242 AYITSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKN 297

Query: 414 KTEER 418
             +E 
Sbjct: 298 TAKEN 302


>gi|29376809|ref|NP_815963.1| hypothetical protein EF2307 [Enterococcus faecalis V583]
 gi|29344274|gb|AAO82033.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 3173

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 51/209 (24%)

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            T+ +P+ G G F           G   +       +G EL+  T  +             
Sbjct: 1649 TVLEPSMGIGNFF----------GMLPEKLAAAKLYGVELDDLTGRIAR----------- 1687

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   K         +       F   + N PFG     DK                  
Sbjct: 1688 --QLYQKADITVDGFERTDHPDDFFDLAVGNVPFGSYQVHDK------------------ 1727

Query: 328  LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              +    +++   +   K       GG  A + +   +    + +     R  L +   +
Sbjct: 1728 --RYDRQNLMIHDYFITKTLDKVRPGGIVAFITTKGTMDKKNSKA-----REALAQKADL 1780

Query: 388  EAIVALPTDLF---FRTNIATYLWILSNR 413
               V LP++ F     T + T +     R
Sbjct: 1781 LGAVRLPSNAFKANAGTEVTTDILFFQKR 1809


>gi|319945759|ref|ZP_08020010.1| adenine-specific methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319748119|gb|EFW00362.1| adenine-specific methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 321

 Score = 52.5 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 44/259 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +++L+ +        A    TP  +  L   L+     +   +       + +   GTG 
Sbjct: 74  FQYLLMKAAQTEPLQANHQFTPDGIGFLLVFLVDQLASSDQVD-------VLEMGSGTGN 126

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                MN              L   G E++     +  +                 N  Q
Sbjct: 127 LAQTLMN---------NCQRSLDYLGLEIDDLLIDLAAS--------MAEVMKADVNFAQ 169

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G               +    R+    P+    +   
Sbjct: 170 GDAIRPQVLKES--DVIISDLPVG-----------YYPDDAIASRYQVASPQGH--TYAH 214

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            + +   L+     GG A  +  +  L + ++      +++W+ ++  + A+V LP +LF
Sbjct: 215 HLLIEQSLKYLKP-GGIAIFLAPNDLLTSEQSPL----LKKWMQDHAQVLAMVTLPENLF 269

Query: 399 FRTNIATYLWILSNRKTEE 417
              N+A  +++L  ++  E
Sbjct: 270 RSANLAKTIFVLRKQEEAE 288


>gi|168207928|ref|ZP_02633933.1| N-6 DNA methylase [Clostridium perfringens E str. JGS1987]
 gi|170660774|gb|EDT13457.1| N-6 DNA methylase [Clostridium perfringens E str. JGS1987]
          Length = 494

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 75/250 (30%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG                
Sbjct: 23  REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++ R +  K        S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + +++  K  +      GL  +            + +     
Sbjct: 109 YDYYIANPPYNC---HEVNFIKENKKRLKNYFNEVGLHNM-------YSMFMSAIIDKAK 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSFF----TAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  + +
Sbjct: 215 LRKGKEYQEK 224


>gi|118442884|ref|YP_877876.1| type IIS restriction enzyme R and M protein [Clostridium novyi NT]
 gi|118133340|gb|ABK60384.1| type IIS restriction enzyme R and M protein, putative [Clostridium
           novyi NT]
          Length = 590

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 37/264 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TP+++       +L  +D +          + DP+CG G  L      + +    +
Sbjct: 60  GVVYTPKEISAYMLENVLSKEDVV----KNPYIKILDPSCGCGDILIVCYEKLKEIYIEN 115

Query: 235 --KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------- 285
              I  +   +  E +   H +    +    ++    + L+ ++ Q S    D       
Sbjct: 116 LKSINEVNNINLNEEDIPKH-IIKNNLFGFDIDEVALKILAIDLFQISGYFCDENLRCMD 174

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   +F   L NPP+          V+KE+       F        D S  F    
Sbjct: 175 FLLNKCDCKFDIILGNPPYVGH-----KCVDKEYSKKLKSSFKEVYKDKGDISYCFFQQA 229

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL----PTDLF 398
            N L       G+ + + S    +   + SGE E+R+ L +   +  IV      P   F
Sbjct: 230 INNL----IKEGKLSFITSR---YFMESPSGE-ELRKVLKDVCSLYTIVDFYGIRP---F 278

Query: 399 FRTNIATYLWILSNRKTEERRGKV 422
               +   +  L N++  +   KV
Sbjct: 279 KNAGVDPVIIFLINKQDAKEEIKV 302


>gi|113477986|ref|YP_724047.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Trichodesmium erythraeum IMS101]
 gi|110169034|gb|ABG53574.1| Type I restriction-modification system methyltransferase
           subunit-like [Trichodesmium erythraeum IMS101]
          Length = 416

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 96/299 (32%), Gaps = 56/299 (18%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           ++ ++  +      TP +++    +  L       K +P     + DP CG+G FL  A 
Sbjct: 13  QYSAQQRKLLGVHYTPDNLIDYIVSHTLFSYLDKNKFTPLDKIKILDPACGSGLFLLKAF 72

Query: 225 N----HVADCGSHHKIPPILV-----PHGQELEPET------HAVCVAGM---------- 259
           +             K   I        +G ++E              A +          
Sbjct: 73  DLLCSLWQKQFGQLKPQDIRHILENNLYGVDIENNAVHEAKKQLKNKANLLGVKEVNIPI 132

Query: 260 -----LIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                L+          L  N +  +       +F    F   + NPP+     + ++  
Sbjct: 133 FQGDALLHSFTDYQINLLFSNPKIFNWQENFPKVFAEGGFDCIIGNPPY----IRIQNLQ 188

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            KE +N  + R+        D + LF+      L+      G+ + ++S+  L    A  
Sbjct: 189 PKERRNHYIERYQTARGHF-DIAGLFIELGHYLLKPQ----GQLSYIISNKLLTTQGA-- 241

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
               +R ++ ++  +  I+ L     F   I   + IL  +           I A+D +
Sbjct: 242 --KALRTYIFKHYSLIEIIDLGDTKLFEAAILPTILILEKQ-----------IPASDYF 287


>gi|256962633|ref|ZP_05566804.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
 gi|256953129|gb|EEU69761.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
          Length = 252

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E      +I          K  + F+ +    +     ++  +Y  L        ++ A 
Sbjct: 48  EREKLYKSIQEKYTEEEQEKFHELFALLVEALEETTTDILGELYMAL-----EIANKDAG 102

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  L   +  +  D   K    +I   YDP  G G  L    N + + G  + 
Sbjct: 103 QFFTPYNVARLMAEMNFNEKDEQLKNGQPVI--FYDPCIGGGVTLIALANIMREKG--YN 158

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
               L     +++    ++      +  +++   R  + + +
Sbjct: 159 YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNALSNE 200


>gi|330814767|ref|YP_004362942.1| hypothetical protein bgla_4p3670 [Burkholderia gladioli BSR3]
 gi|327374759|gb|AEA66110.1| hypothetical protein bgla_4p3670 [Burkholderia gladioli BSR3]
          Length = 223

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 19/134 (14%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSG---------IELHPDTVPDRVMSNIYEHL 162
           +  F  FD                  + FS          ++L        V+ ++Y  L
Sbjct: 2   RFNFSQFDAREARYLEVIKPYQADELRAFSEMLANLMLAFLDLSKMGEFADVLGSLYMRL 61

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATAL-LLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
                   S  A  F TP  V  +   + + D  D   +E      T+ DP CG GG + 
Sbjct: 62  -----ELGSSRAGQFFTPYHVSRMMGQIQVGDGTDMRARE----FVTVSDPACGAGGMII 112

Query: 222 DAMNHVADCGSHHK 235
              +     G  H+
Sbjct: 113 AFADAARSVGLDHR 126


>gi|331698571|ref|YP_004334810.1| N-6 DNA methylase [Pseudonocardia dioxanivorans CB1190]
 gi|326953260|gb|AEA26957.1| N-6 DNA methylase [Pseudonocardia dioxanivorans CB1190]
          Length = 585

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 76/282 (26%), Gaps = 64/282 (22%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +EL      +   +  +E L  R+    S       TP DVV     L           +
Sbjct: 118 VELAERVADEHGHAGAFELLHARYLETDSRRLR--PTPPDVVAAMLELA----------A 165

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           P     L DP CGTGG L  A                    G +L P+   +        
Sbjct: 166 PEPGELLLDPACGTGGLLVAA--------------RADRLRGVDLAPDRALIAA------ 205

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                              L             + +PP G              +    G
Sbjct: 206 --ARLRLARREAASVCADALLPPDPADL-ADVVVCDPPVG-------------DRRDLDG 249

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +  G+P  S+  + +              GGR  + + ++     R     +     LL
Sbjct: 250 PWPYGVPPRSEPELAWAQRCV----QRVRPGGRVVVRMPAAAASRRRGRRVRAA----LL 301

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
            +  + A+V               LW+L   +  +RR    L
Sbjct: 302 HDGALRAVV--------GAGHDADLWVLRRPRAGDRRPTTIL 335


>gi|253990773|ref|YP_003042129.1| hypothetical protein PAU_03299 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639104|emb|CAR67716.1| Hypothetical protein PA-RVA20-21-0105 [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782223|emb|CAQ85387.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 616

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 12/222 (5%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
           R +   +P+   V E  LA      +      +  ++     E                 
Sbjct: 360 REDEDNDPSDDNVVELPLAATYREPNPHKQAFIRLFNQIAPHENRWQVFCDFVHMAACSL 419

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           Y A   ++    FE            +           S + +  +      +  I+  L
Sbjct: 420 YNALLQND---EFEADYMQRVKRYSREDAFRLSRL--LSEVIMGLEYEVGDFLGAIFMAL 474

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
                   ++    + TP  V H+   + L    A          T+ DP CG GG +  
Sbjct: 475 -----ELGNDQTGQYFTPFPVNHMMARMKLAEGLARLGSGEHEYITVSDPDCGAGGMIIA 529

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               + + G +      ++    +++P    +    + +  +
Sbjct: 530 MYQTMLEAGFN--PQQQMLAFCVDIDPVAAMMTYIQLSLLGV 569


>gi|212705064|ref|ZP_03313192.1| hypothetical protein DESPIG_03133 [Desulfovibrio piger ATCC 29098]
 gi|212671508|gb|EEB31991.1| hypothetical protein DESPIG_03133 [Desulfovibrio piger ATCC 29098]
          Length = 199

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR- 207
           T  +  +  +YE          +     + TP  V  L   +            P   R 
Sbjct: 22  TTNEETLGPLYEEY------AANHYTGQYFTPSSVARLMARIT-------HTAPPETGRF 68

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            + DP CG G  L  A           +     +  GQ+++     +    ++   L+ 
Sbjct: 69  KVLDPACGAGACLIAAAKE-----QTFEQNGRALFVGQDIDLNCARMTALNLMFFNLDG 122


>gi|168187409|ref|ZP_02622044.1| DNA modification methyltransferase [Clostridium botulinum C str.
           Eklund]
 gi|169294713|gb|EDS76846.1| DNA modification methyltransferase [Clostridium botulinum C str.
           Eklund]
          Length = 590

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 76/263 (28%), Gaps = 35/263 (13%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------ 228
               TP+++       ++  +  +          + DP+CG G  L      +       
Sbjct: 60  GVVYTPKEIAAYMLENVVTKEHIISNPYI----KILDPSCGCGDILIVCYEKLKKIYIKN 115

Query: 229 -----DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                +  +       +  H  E       +    + I  ++         N        
Sbjct: 116 LQYINEVNNTKLKEEDIPKHIIENNLYGFDIDEVAIKILAIDLFQVSGYFCNKNLKCMDF 175

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +F   L NPP+          V+KE+       F        D S  F     
Sbjct: 176 LLDKCDSKFDIILGNPPYVGH-----KCVDKEYSKKLKSSFKEIYKDKGDISYCFFQQAI 230

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL----PTDLFF 399
           N L        R   +   +  +   + SGE E+R+ L +   +  IV      P   F 
Sbjct: 231 NNL-------IREGKLSFITSRYFMESPSGE-ELRKVLKDVCSLYTIVDFYGIRP---FK 279

Query: 400 RTNIATYLWILSNRKTEERRGKV 422
            T +   +  L N++  +   KV
Sbjct: 280 NTGVDPVIIFLINKQDAKEEIKV 302


>gi|213865304|ref|ZP_03387423.1| hypothetical protein SentesT_36419 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 371

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 117 DFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D DF +   R            + +  S + +  +  P   +  IY           +  
Sbjct: 187 DPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIY-----MISGLGNFH 241

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TP  V +    + L               T+ DP  G G  +      + + G +
Sbjct: 242 NAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN 301

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 +V +  +++P    +C   + +  +
Sbjct: 302 --PQKQMVAYCVDIDPVASMMCYIQLSLMGI 330


>gi|213649083|ref|ZP_03379136.1| hypothetical protein SentesTy_18458 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 359

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 117 DFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D DF +   R            + +  S + +  +  P   +  IY           +  
Sbjct: 175 DPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIY-----MISGLGNFH 229

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TP  V +    + L               T+ DP  G G  +      + + G +
Sbjct: 230 NAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN 289

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 +V +  +++P    +C   + +  +
Sbjct: 290 --PQKQMVAYCVDIDPVASMMCYIQLSLMGI 318


>gi|213620682|ref|ZP_03373465.1| hypothetical protein SentesTyp_25602 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 469

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 117 DFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D DF +   R            + +  S + +  +  P   +  IY           +  
Sbjct: 285 DPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIY-----MISGLGNFH 339

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TP  V +    + L               T+ DP  G G  +      + + G +
Sbjct: 340 NAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN 399

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 +V +  +++P    +C   + +  +
Sbjct: 400 --PQKQMVAYCVDIDPVASMMCYIQLSLMGI 428


>gi|16763059|ref|NP_458676.1| hypothetical protein STY4592 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144542|ref|NP_807884.1| hypothetical protein t4286 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213427259|ref|ZP_03360009.1| hypothetical protein SentesTyphi_17642 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|224586142|ref|YP_002639941.1| hypothetical protein SPC_4447 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|25512608|pir||AE1033 hypothetical protein STY4592 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505366|emb|CAD09366.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140180|gb|AAO71744.1| hypothetical protein t4286 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|224470670|gb|ACN48500.1| hypothetical protein SPC_4447 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 649

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 117 DFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D DF +   R            + +  S + +  +  P   +  IY           +  
Sbjct: 465 DPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIY-----MISGLGNFH 519

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TP  V +    + L               T+ DP  G G  +      + + G +
Sbjct: 520 NAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN 579

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 +V +  +++P    +C   + +  +
Sbjct: 580 --PQKQMVAYCVDIDPVASMMCYIQLSLMGI 608


>gi|265755241|ref|ZP_06090011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234383|gb|EEZ19973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1946

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 79/258 (30%), Gaps = 52/258 (20%)

Query: 160 EHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           E+  +R+   + +     F TP ++       L +               + +P+ G G 
Sbjct: 89  EY--KRYADAMKQSVLTAFYTPPEITGTIAEALHEHGIRP--------DRVLEPSAGVGA 138

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           F+   +             P       E +  T      G ++  L  D +  +     Q
Sbjct: 139 FVDAVLE----------NKPDADIMAFEKDLMT------GKILGHLHPDQKVRV-----Q 177

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G    +  FT   F   +SN PFG     D    + E    +          I +   L 
Sbjct: 178 GFEKIEKPFTDY-FDLAISNIPFG-----DVAVFDPEFTGSQDPARRSAPKAIHNYFFL- 230

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                 K       GG  A + S   L           IR +++ N  +  +  LP +LF
Sbjct: 231 ------KSLDAVREGGIVAFITSQGVLDAPSNAP----IREYMMRNANLVGVARLPNNLF 280

Query: 399 ---FRTNIATYLWILSNR 413
                T + + L IL   
Sbjct: 281 TDNAGTEVGSDLIILQKN 298


>gi|172039720|ref|YP_001799434.1| hypothetical protein cur_0040 [Corynebacterium urealyticum DSM
           7109]
 gi|171851024|emb|CAQ04000.1| hypothetical protein cu0040 [Corynebacterium urealyticum DSM 7109]
          Length = 156

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M+++ E L+ R  SE  + A  F  PRD   L   +LL   D          RT+Y P  
Sbjct: 1   MAHLSEDLMYRSSSENWQVAVGFDIPRDTSRLMVDVLLSC-DGHGFYGQVPARTVYSPAA 59

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-----EPETHAVCVAGML 260
           GTGG L  A   + D      +      + +EL     +   H + +   L
Sbjct: 60  GTGGILLVAKRAMEDLNPKIGV----SVYSRELMAWPRQIRPHRLLLMAFL 106


>gi|332884167|gb|EGK04435.1| hypothetical protein HMPREF9456_00762 [Dysgonomonas mossii DSM
           22836]
          Length = 1864

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 81/257 (31%), Gaps = 52/257 (20%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F S  +     F TP +VV               K++   +    DP+ G G F    
Sbjct: 92  QYFNSIKNSVLTAFYTPPEVVQTIA--------GTLKDAGIEVNRFLDPSAGMGEF---- 139

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                                 E +  T      G L+  L+ + +  +    +   +  
Sbjct: 140 --------PKAFSNDDTEKFCFEKDLLT------GKLLSHLQPEDKVKIE-GFETIESRY 184

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      F    SN PFG     D   ++++  + +  R                 +  
Sbjct: 185 NNY-----FDVVSSNIPFGDMSVFDASFMKQDALHRDSTR-------------AIHNYFF 226

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + S   + +         +R+WL+EN  + + + LP +LF     
Sbjct: 227 VKGVESLREGGIMAFITSQGVMNSPNNEP----VRKWLMENTNLVSAIRLPNNLFTDYAG 282

Query: 401 TNIATYLWILSNRKTEE 417
           T + + L +L     +E
Sbjct: 283 TEVGSDLILLQKNTAKE 299


>gi|262195378|ref|YP_003266587.1| restriction endonuclease [Haliangium ochraceum DSM 14365]
 gi|262078725|gb|ACY14694.1| restriction endonuclease [Haliangium ochraceum DSM 14365]
          Length = 629

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 66/254 (25%), Gaps = 34/254 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFK---ESPGMIRTLYDPTCGTGGFLTDAMNHV 227
                 F TP  +V    A  L    A  +           + DP  G G FL  A   +
Sbjct: 72  RRARGAFFTPLPLVDFVVAQTLGARLARGELRWRGDIPALRVLDPCAGDGRFLRRAHAAL 131

Query: 228 ADCGSHHKIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                     P           G E +P   A+       RRL            +   +
Sbjct: 132 LAWTRRQGRAPDPDALARACLLGVERDPGFAALA------RRLSGAEIHCWEALGESPDS 185

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            +        F   + NPP+ +     D D    +   G            S G      
Sbjct: 186 FAG------SFDLVVGNPPYMRSIHLADSDPALWQALAGRYA-------ATSHGEWDLYA 232

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFF 399
                       GG+  +V+ S  L    A      +R  L E   + AIV      +F 
Sbjct: 233 AFLEHSLRWLAPGGQVGLVVPSRWLTAAFARP----LRALLGEGRAVRAIVDFGAQQIFR 288

Query: 400 RTNIATYLWILSNR 413
                  +  LS  
Sbjct: 289 GATTYASVAFLSRE 302


>gi|295397611|ref|ZP_06807687.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
 gi|294974149|gb|EFG49900.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
          Length = 128

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K       V  I+A++ +T  +N    +  + +    +I + Y+ RE+  K++ +  Y  
Sbjct: 2   KKNRDSRDVLFIDASNEFTKAKN----QNKLEEKHLDKIYETYLKREDVEKYAHVATYEE 57

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
                  +  P  +    +   +  +      ++     +    ++L
Sbjct: 58  IEENDFNLNIPRYVDTFEEAEPIDVVALKDEMKQTDQEIEDVSKELL 104


>gi|210610421|ref|ZP_03288401.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
 gi|210152498|gb|EEA83504.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
          Length = 2510

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 83/585 (14%), Positives = 170/585 (29%), Gaps = 106/585 (18%)

Query: 40   LLRR---LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
            + +R   +E +++  R   RE+ +A G      E+   V+  +      +  + L     
Sbjct: 805  VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAVQKKHNFHYN-LWEMEK 863

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRV 154
                  Y   ++ +A    +  +  + +A  E+   L K       S      +    + 
Sbjct: 864  GGAKTRY--QWNMDAIRTLKQIESENRLATPEEQKTLSKFVGWGGLSRAFDENNESWSKE 921

Query: 155  MSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               + E L    + +  +     F T  ++            ++   +       + +P+
Sbjct: 922  YKELKEMLSDEEYAAARATVNNAFYTSPEIAMCM--------NSALVQFGFRGGNVLEPS 973

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDP 268
             G G F           GS          +G EL+  +  +       A + I   E   
Sbjct: 974  MGIGNFF----------GSMPAPMQRSKLYGVELDSISGRIAKQLYQNANISITGFE--- 1020

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                       +T   D F    F   + N PF                 G+   F P  
Sbjct: 1021 -----------NTTYPDNF----FDVVVGNVPF-----------------GDYKVFDP-- 1046

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             K +  +     +   K       GG  A++ +   L           IR++L E   + 
Sbjct: 1047 -KYNKYNFRIHDYFLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAELV 1100

Query: 389  AIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWT--SIRNEGKKRRI 443
              V LP   F     T +   +  L  R   ER+     I+    W    +   G     
Sbjct: 1101 GAVRLPNTAFKDNAGTEVTADILFLQKR---ERK-----IDIEPDWVHLGVTENGIAVNS 1152

Query: 444  INDDQRRQIL-----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
               +    +L     D  +  ++ +++  ++          + +            +  +
Sbjct: 1153 YFAEHPEMMLGSMEYDTRIYGQDSRYTVCVNNDENFNMYETLNK-----------AIGNI 1201

Query: 499  EADIT-WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
            +A +T + +++   +     I      + Y Y + E  +     S   K    + ++  I
Sbjct: 1202 KAQMTDFERVADEAEQTEEVIPADPDVRNYTYTFFEGKLYYRENSEMVKKEVSQTAEERI 1261

Query: 558  VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
             +            D   D   E           NV Y   ++ Y
Sbjct: 1262 RSLDEIRQITRELIDIQMDGCSEEELSDKQRLL-NVKYDAFVKQY 1305


>gi|218134673|ref|ZP_03463477.1| hypothetical protein BACPEC_02576 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990058|gb|EEC56069.1| hypothetical protein BACPEC_02576 [Bacteroides pectinophilus ATCC
           43243]
          Length = 359

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 69/240 (28%), Gaps = 64/240 (26%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +    ++   +       + +P+ G G F           GS          +G EL+  
Sbjct: 45  IAMCINSALVQFGFKGGNVLEPSMGIGNFF----------GSMPAPMQQSKLYGVELDSI 94

Query: 251 THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 95  SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVMGNVPF---- 132

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                        G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 133 -------------GDYKIFDP---KYNKYNFRIHDYFLAKALDQARPGGMVAVITTKGTL 176

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV 422
                      IR++L E   +   + LP   F     T +   +  L  R   ER+  +
Sbjct: 177 DKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGTEVTADILFLQKR---ERKIDI 228


>gi|49420971|gb|AAT65827.1| M.EsaWC3I [uncultured bacterium]
          Length = 422

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 45/254 (17%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           ++I +  SE  E      TP ++V     L                  + +P C    FL
Sbjct: 19  YMILQNASE--ESLGAVYTPPELVAFMVHLAHP---------TQPRCRVLEPACADAPFL 67

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                     GSHH+        G E++P    +  A            R  +    +  
Sbjct: 68  AAFAERY---GSHHE------FVGVEIDP--ARLARA----------RERLPTMTFVEAD 106

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFL 339
            L       + F   + NPP+G   +     +    +   L R      +        F+
Sbjct: 107 FLL--WVPNETFDVIIGNPPYGIIGDASHYPIHVLRERKALYRQRSLTWRGKYNIYGAFI 164

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H A  L       G+   V+ +S L           +R +L     + ++  L   +F 
Sbjct: 165 EHAARLL----APEGKLVFVVPASWLVLDD----FVRLREYLATQGRL-SVYYL-GKVFP 214

Query: 400 RTNIATYLWILSNR 413
           + N++  + +L   
Sbjct: 215 KRNVSVVVLVLEKG 228


>gi|240147472|ref|ZP_04746073.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257200328|gb|EEU98612.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 568

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 69/240 (28%), Gaps = 64/240 (26%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +    ++   +       + +P+ G G F           GS          +G EL+  
Sbjct: 349 IATCINSALVQFGFKGGNVLEPSMGIGNFF----------GSMPAPMQQSRLYGVELDSI 398

Query: 251 THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 399 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVMGNVPF---- 436

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                        G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 437 -------------GDYKIFDP---KYNKYNFRIHDYFLAKALDQARPGGMVAVITTKGTL 480

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV 422
                      IR++L E   +   + LP   F     T +   +  L  R   ER+  +
Sbjct: 481 DKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGTEVTADILFLQKR---ERKIDI 532


>gi|153011948|ref|YP_001373160.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
 gi|151563836|gb|ABS17331.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1702

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 50/231 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F                        G EL+P T  +         
Sbjct: 189 WRGGRVLEPGIGTGLFPALMPEAFR---------ASSYVTGIELDPVTARIVRL------ 233

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     DL  G  +   + NPPF  +  +     ++ +++  L  
Sbjct: 234 ------LQPKARIVNGDFARTDL--GVIYDLAIGNPPFSDRTVRS----DRNYRSLGLRL 281

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + +             + L+     G  AA V S   +      +     R  + +
Sbjct: 282 HDYFIARS-----------IDLLKP----GALAAFVTSHGTMDKADTTA-----REHIAK 321

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           +  + A + LP   F     T++   +     RK  E  G V  ++  ++ 
Sbjct: 322 SANLVAAIRLPEGAFRADAGTDVVVDILFFRKRKAGEPEGDVTWLDVDEIR 372


>gi|323519972|gb|ADX94351.1| hypothetical protein ABTW07_2p058 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 258

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICK 138
            Y      +    +    +    Y   F+ N +    +  +      RL+   L Y +  
Sbjct: 31  IYEIFHDFVFCSAAALRNSIGHRYQNLFNQNIENEYLQRINRYDVSGRLKIKNLFYLLVD 90

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                       P  V+ +IY  L        ++    + TP +V +L   +++      
Sbjct: 91  LCEA-----KGEPYDVLGSIYMEL-----EIGNDHIGQYFTPSEVSNLCAQVVITDLKKQ 140

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
            +E   +  ++ DP CG G  L   +    +  S  ++   L     +++     +C
Sbjct: 141 LEEEGVI--SISDPACGAGSTLLSTVKLCLE--SKIQVQDHLYIEAADIDRNVALMC 193


>gi|330937284|gb|EGH41297.1| Type I restriction enzyme (modification subunit) [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 346

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 15/118 (12%)

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +++       RF       + G +  + H+  +        GR  +++  S LF   A  
Sbjct: 219 KEDLDRDSYQRFD---HASAKGPLAAVFHILAQ------TEGRVILLVPDSLLFKPGA-- 267

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            E  +R +LL    +EA+V+LPT        A  + IL+     E   +V  +  T+ 
Sbjct: 268 -ERSLREYLLTRQRVEAVVSLPTGAAQGLKGACSILILNTVLASE---QVLFVKVTNE 321


>gi|282933140|ref|ZP_06338527.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
 gi|281302644|gb|EFA94859.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
          Length = 332

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 93/308 (30%), Gaps = 40/308 (12%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +  +   ++E      +     S    EL+ D +P      ++  L  +   E       
Sbjct: 36  NLENGKIKVEMGAPDKETVALLSKKYQELNYDKLPSTQKYMVFTLLTLKAMKEDGRNYSQ 95

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP  V+    A++ D      K        + DP  GTG  L   ++ +      H  
Sbjct: 96  MPTP-PVLATVVAMVWD------KLITKTELAVVDPAIGTGSLLYTVIDQLVQS---HHS 145

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G + +     +          +        K         ++    K     +
Sbjct: 146 QNKYRLAGIDNDESMLDLA---------DVGAHLSNYKIDLYCQDALENWLIEKP-DVIV 195

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           S+ P G         +++  KN           +  +G  L    L  +        G A
Sbjct: 196 SDLPVGYY------PIDENAKN--------FATQAKEGHSLAHELLVEQTIKNLAPAGYA 241

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +++ +S L     G   +E   WL +   ++A+V LP DLF        L +  N    
Sbjct: 242 FLLVPNSLL----GGKLGAEFMPWLAKKVYLQAVVQLPNDLFQNPLNQKSLLVFQNHGEG 297

Query: 417 ERRGKVQL 424
            +   V L
Sbjct: 298 AQSRDVLL 305


>gi|210610627|ref|ZP_03288527.1| hypothetical protein CLONEX_00717 [Clostridium nexile DSM 1787]
 gi|210152349|gb|EEA83355.1| hypothetical protein CLONEX_00717 [Clostridium nexile DSM 1787]
          Length = 2022

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 73/253 (28%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              +    S     F TP  V+     +L +   +           + +P+CG G F+   
Sbjct: 1041 GEYREARSSTLNAFYTPPTVIKAMYQILENMGLSTGN--------VLEPSCGVGNFM--- 1089

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G   +    +  +G EL+P +  +               +   KN  +     
Sbjct: 1090 -------GLVPESMQNIQMYGVELDPISGKIA-------------GQLYQKNRIEVKGFE 1129

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  +    F   + N PFG     D+                    K    S++   +  
Sbjct: 1130 RTEYPESFFDCVIGNVPFGNYQVSDR--------------------KYDKYSLMIHDYFI 1169

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A++       +        ++R    E   +   + LP + F     
Sbjct: 1170 VKSLDLIRPGGVVAVIT-----SSRTMDKESEKVRLQFAEKADLLGAIRLPENAFRKNAG 1224

Query: 401  TNIATYLWILSNR 413
            T++ + +     R
Sbjct: 1225 TDVVSDILFFQKR 1237


>gi|290243013|ref|YP_003494683.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945518|gb|ADC73216.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 1722

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 84/256 (32%), Gaps = 56/256 (21%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  +   + + TP  +V L          +           + +PT G+G F+    
Sbjct: 81  EYASMRASVLDAYFTPESLVRLM--------WSGLARLGFAGGRVLEPTVGSGAFI---- 128

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            HV D    H     +   G E++  +  +  A      +   P   +S           
Sbjct: 129 EHVPDALRDH-----ITVTGIEIDAVSARLAKALYPGHYIVEKPFEAVSL---------- 173

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                + F   + NPP+  +   D+ A                  K   GS+     +A 
Sbjct: 174 ---QDEAFDAAIGNPPYDARTVFDRTA------------------KKLKGSIHTFT-MAK 211

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            ++    GG  A +V       +  A  G  + R WLL++  + A   LP ++F      
Sbjct: 212 AMKKVRAGGVGAFVV-------SRYALDGFDDARDWLLDHTRLLAAYRLPVEVFKDAGAE 264

Query: 405 TYLWILSNRKTEERRG 420
               ++  ++ +E  G
Sbjct: 265 VITDVVFLQRVDEANG 280


>gi|225378233|ref|ZP_03755454.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
 gi|225209896|gb|EEG92250.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
          Length = 2481

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 113/389 (29%), Gaps = 80/389 (20%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            +    ++   +       + +P+ G G F           GS          +G EL+  
Sbjct: 954  IATCINSALVQFGFKGGNVLEPSMGIGNFF----------GSMPAPMQQSRLYGVELDSI 1003

Query: 251  THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 1004 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVMGNVPF---- 1041

Query: 306  EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                         G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 1042 -------------GDYKIFDP---KYNKYNFRIHDYFLAKALDQARPGGMVAVITTKGTL 1085

Query: 366  FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV 422
                       IR++L E   +   + LP   F     T +   +  L  R   ER+   
Sbjct: 1086 DKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGTEVTADILFLQKR---ERK--- 1134

Query: 423  QLINATDLWT--SIRNEGKKRRIINDDQRRQILDI--YVSR---ENGKFSRMLDYRTFG- 474
              I+    W    +  +G        +    +L    Y +R   ++ K++  ++      
Sbjct: 1135 --IDIEPDWVHLGVTGDGIAVNSYFAEHPEMMLGTMQYDTRMFGQDSKYTVCVNNDENFN 1192

Query: 475  -YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
             Y  + +      + + D   LA  E      ++ P               ++Y    +E
Sbjct: 1193 LYEALNMAISNIKAQMTDFERLAENEEQT--EEVIPADPDVRNYTYTFFEGKLYYRENSE 1250

Query: 534  SFVKESIKSNEAKTLKVKASKSFIVAFIN 562
               ++   + E +   +   +      I+
Sbjct: 1251 MVRQKVSPTAEGRIKSLDEIRQITRELID 1279


>gi|220908573|ref|YP_002483884.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219865184|gb|ACL45523.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 7425]
          Length = 1125

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 6/134 (4%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE---LHPDTVPDRVMSNIYEHLIRR 165
              KA+FE     + + RL+   +L    +  + ++           + +   YE  +  
Sbjct: 281 PMIKALFEKVATPTHVRRLDLEEVLNWTGEALNRVDRESFFSKFDEGQAVQYFYEPFLEA 340

Query: 166 FGSEVSEGAEDFMTPRDVVHLATAL---LLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           F   + +    + TP +VV    A    +L  +  +          + DP CGTG FL +
Sbjct: 341 FDPALRKEFGVWYTPPEVVQYMVARVDKVLREELQIEDGLADPNVYILDPCCGTGAFLVE 400

Query: 223 AMNHVADCGSHHKI 236
            +  +        I
Sbjct: 401 VLKRIETNLQDKGI 414


>gi|261209214|ref|ZP_05923606.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566131|ref|ZP_06446566.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|294614183|ref|ZP_06694103.1| adenine-specific methyltransferase [Enterococcus faecium E1636]
 gi|260076760|gb|EEW64495.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162076|gb|EFD09941.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291592959|gb|EFF24548.1| adenine-specific methyltransferase [Enterococcus faecium E1636]
          Length = 335

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 135/384 (35%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E    +  + +  + 
Sbjct: 10  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELNK 69

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+    R +S +   L+ +        A   +TP  +  L   L+          +
Sbjct: 70  LSFEPEEW--RRLSQL---LLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 119

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 120 KKAPVKILDIAAGMGNLLLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----- 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q     +DL       + +S+ P G  +  + +  ++   + E G
Sbjct: 169 --TSDLTQANVQYFHQD--GLQDLLID-PVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 221

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 222 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 265

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 266 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAQQVKEVLLV---------------- 309

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 310 KLASLKEPEKVTEFFNEFKNWKSS 333


>gi|219856139|ref|YP_002473261.1| hypothetical protein CKR_2796 [Clostridium kluyveri NBRC 12016]
 gi|219569863|dbj|BAH07847.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 599

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 110/309 (35%), Gaps = 41/309 (13%)

Query: 160 EHLIRRFGSEV--SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           E+  +++   V  ++ A    T R++ +     L++  D ++         + DP CG G
Sbjct: 53  EYFSQKYYELVSINKRAGIVYTQRELSYFMIKNLIEEKDVIY----NPFVKIVDPACGCG 108

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKN 275
             L+    ++      +      V +         +H VC   +    ++    + L+ +
Sbjct: 109 NILSVCFFYLRHIFIKNIEVINNVNNINLKLENINSHIVC-NNLFGFDIDEIALKILNID 167

Query: 276 -------IQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                   Q+ + + KD       K+F   + NPP+      +K   E       L R  
Sbjct: 168 LFSISGEFQKENFVLKDFLIDAIEKKFDIFIGNPPYIGHKSIEKKYSET------LKRVY 221

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K  D S ++       L+      G+AA +      +   A SG  ++R +L  N 
Sbjct: 222 KNIYK--DKSDVYYCFFEKSLK-SLEKAGKAAFITPR---YFCEACSG-KQLREFLSTNT 274

Query: 386 LIEAIVAL----PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            I  IV      P   F    +   +    N+K    + ++   + ++     RN+    
Sbjct: 275 TIYKIVDFYGIRP---FKGVGVDPIIIFFRNKKGLNNKIEIIKPDKSE--KKGRNKFYDS 329

Query: 442 RIINDDQRR 450
             +N D+ R
Sbjct: 330 LFLNKDKIR 338


>gi|332361300|gb|EGJ39104.1| SNF2 family protein [Streptococcus sanguinis SK1056]
          Length = 2273

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 106/411 (25%), Gaps = 82/411 (19%)

Query: 37  PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           P   LR LE   +       E+       +++L+ F  +             ++L S   
Sbjct: 501 PVLFLRTLEDITQALHVPSVEEKEEVEEPSLELDLFSFMDMEESQEPVSQVTTSLSSNKK 560

Query: 97  RNNLESYI--ASFSDNAKAIFE--DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
               E  +                DF F   +          K+  N + I L      +
Sbjct: 561 EAKQEEALSEDELEPEVTETLPVTDFHFPEDLTDFYPKTTRDKVEMNVAAIRLVKRLESE 620

Query: 153 RVMSNIYE-HLIRRFGSEVSEGAEDF--MTP-----RDVVHLAT-----------ALLLD 193
              +   E  L+ ++        E F    P     R+ +               +L   
Sbjct: 621 YRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREALKTLVTDKEYTDMKQSSLTAY 680

Query: 194 PDDALFKESPG--------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
             D                    + DP+ GTG F      H+ +             +G 
Sbjct: 681 YTDPHLIRQMWEKLERDGFTGGKILDPSMGTGNFFAAMPKHLRENSE---------LYGV 731

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL+  T  +         L  +   ++              F    F   LSN PF    
Sbjct: 732 ELDTITGVIAK------YLHPNSHIEVKG-------FETIAFNDNSFDLILSNVPFANIR 778

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             D              R+        D   +   +   K     + GG+ AI+ S+  +
Sbjct: 779 IVD-------------SRY--------DKPYMIHDYFVKKSLDLVHDGGQVAIISSTGTM 817

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                      I + + E       V LP   F     TN+ T +      
Sbjct: 818 DKRT-----ENILQDIRETTDFLGGVRLPDSAFKAIAGTNVTTDMLFFQKH 863


>gi|325568565|ref|ZP_08144858.1| superfamily II DNA/RNA helicase [Enterococcus casseliflavus ATCC
            12755]
 gi|325157603|gb|EGC69759.1| superfamily II DNA/RNA helicase [Enterococcus casseliflavus ATCC
            12755]
          Length = 1561

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 118/396 (29%), Gaps = 54/396 (13%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
            R LE   E      +           D  S   +    F  + +++++          + 
Sbjct: 711  RYLEDWSEDVAKIAQRHIEQITIMISDKNSQTAIEFDKFLKSLQHNINESIDEKQAIEML 770

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------- 152
            +     +   +A+F ++ F +     E    + +    F G     D + +         
Sbjct: 771  AQHLITAPIFEALFGEYSFVNNNPVSEAMDKIVEELSRFGGFNKEQDELKEFYDSVKLRA 830

Query: 153  ----------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KE 201
                      R++  +Y+    +   E ++      TP +VV      + D     F K 
Sbjct: 831  EGIDNAEAKQRIIITLYDKFFSKGFKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKA 890

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAV 254
                   + DP  GTG F+   ++++ D  ++ KI             H  E+   ++ +
Sbjct: 891  IEDEGVHILDPFTGTGTFIVRTLHYLKDKLANGKITLADITRKYTQELHANEIVLLSYYI 950

Query: 255  CVAGM-----LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------Y 294
                +      +   E  P   +       ST  +D      F                 
Sbjct: 951  AAINIESTFAEMNHEEYKPFEGIVLTDTFESTEQEDTLDDSFFGTNDERLKRQQKVPITV 1010

Query: 295  CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH--LANKLELPPNG 352
             + NPP+        D  +         R      K S  ++L  ++           + 
Sbjct: 1011 IIGNPPYSVGQSNANDNNQNVSHPKLNSRIAETYVKNSKANLLRNLYDDFVKGFRWASDR 1070

Query: 353  GGRAAIV--LSSSPLFNGRAGSGESEIRRWLLENDL 386
             G+  ++  +++    + +  SG   +R+ L +   
Sbjct: 1071 IGKTGVIGFVTNGSFIDSQTMSG---MRKCLHDEFN 1103


>gi|309389439|gb|ADO77319.1| hypothetical protein Hprae_1180 [Halanaerobium praevalens DSM
          2228]
          Length = 51

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL 44
              +WK+++ L  +    ++  V+L    L+ +
Sbjct: 8  FEEDLWKSSDKLRNNMDPAEYKHVVLGLIFLKYI 41


>gi|256851410|ref|ZP_05556799.1| adenine-specific DNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260660831|ref|ZP_05861746.1| adenine-specific DNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|297206223|ref|ZP_06923618.1| possible DNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256616472|gb|EEU21660.1| adenine-specific DNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548553|gb|EEX24528.1| adenine-specific DNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|297149349|gb|EFH29647.1| possible DNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 332

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 93/308 (30%), Gaps = 40/308 (12%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           +  +   ++E      +     S    EL+ D +P      ++  L  +   E       
Sbjct: 36  NLENGKIKVEMGAPDKETVALLSKKYQELNYDKLPSTQKYMVFTLLTLKAMKEDGRNYSQ 95

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP  V+    A++ D      K        + DP  GTG  L   ++ +      H  
Sbjct: 96  MPTP-PVLATVVAMVWD------KLITKTELAVVDPAIGTGSLLYTVIDQLVQS---HHS 145

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G + +     +          +        K         ++    K     +
Sbjct: 146 QNKYRLAGIDNDESMLDLA---------DVGAHLSNYKIDLYCQDALENWLIEKP-DVIV 195

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           S+ P G         +++  KN           +  +G  L    L  +        G A
Sbjct: 196 SDLPVGYY------PIDENAKN--------FATQAKEGHSLAHELLVEQTIKNLAPAGYA 241

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +++ +S L     G   +E   WL +   ++A+V LP DLF        L +  N    
Sbjct: 242 FLLVPNSLL----GGKLGAEFMPWLAKKVYLQAVVQLPNDLFQNPLNQKSLLVFQNHGEG 297

Query: 417 ERRGKVQL 424
            +   V L
Sbjct: 298 AQSRDVLL 305


>gi|300777243|ref|ZP_07087101.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300502753|gb|EFK33893.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1809

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 77/245 (31%), Gaps = 51/245 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V+ + + ++ D        +   I    +P+ G G F+     +     ++ K 
Sbjct: 105 FYTPPQVIDVISQVMCD--------NNLHIDKFLEPSAGIGSFVQSFAGNETKVTAYEKD 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   Q     T  +          E    ++ +                  +    
Sbjct: 157 VLTGKILKQLYPESTVRIS-------GFEEISEKEQNS-----------------YDVVA 192

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +  +   +          I +   L    +          GG  
Sbjct: 193 SNIPFG-----DTSVFDLSYSRSKDSAKVQAARSIHNYFFLKGNDMLR-------DGGLQ 240

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L + +       IRR LLEN+ + +++ LP +LF     T + + L IL   
Sbjct: 241 AFITSQGILNSAKNEP----IRRALLENNDLVSVIRLPNNLFTDYAGTEVGSDLIILQKN 296

Query: 414 KTEER 418
             ++ 
Sbjct: 297 TAKQN 301


>gi|255016390|ref|ZP_05288516.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|319644400|ref|ZP_07998854.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A]
 gi|317384120|gb|EFV65095.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A]
          Length = 1943

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 52/253 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  D       
Sbjct: 105 FYTPKEITDTLADVLADYSVRPA--------RILEPSAGVGVFVDSMLRHSPDADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +       +       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDKKTRTCGFEK------IEKPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQNAIHNYFFLKGLDTVRDGGIM 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN- 412
           A + S   L      S ++ +R  L +   + + V LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFKQANLVSAVRLPNNLFTDNAGTEVGSDLIVLQKH 297

Query: 413 -RKTEERRGKVQL 424
             K E  + +  +
Sbjct: 298 LNKKEMSQDERLM 310


>gi|119513547|ref|ZP_01632565.1| adenine specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119461796|gb|EAW42815.1| adenine specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 835

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP------ 147
           T  R     YI+      K +F+    + +++++ K+  +  + +  + +++        
Sbjct: 231 TFNRTTASIYISDRIPFLKGLFDIVIATDSVSKIHKS--IENLVELLNTVDMTNILETFG 288

Query: 148 -DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKE 201
            +T  +  + + YE  +  + +++ +    + TP  VV+         L+ +    L   
Sbjct: 289 QETRTEDPVIHFYETFLAAYEAKLRKSRGVYYTPEPVVNFIVRAVNDILVNEEIFDLQHG 348

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPET 251
                 T+ DP  GTG FL   +  + D  S + I                 G EL    
Sbjct: 349 LGNRKVTILDPATGTGTFLYAVIKQIRDNVSKYGIDKWNTFLRDAKLINRLFGFELLMTP 408

Query: 252 HAVC 255
           + + 
Sbjct: 409 YTIA 412


>gi|110798617|ref|YP_697278.1| N-6 DNA methylase [Clostridium perfringens ATCC 13124]
 gi|110673264|gb|ABG82251.1| N-6 DNA methylase [Clostridium perfringens ATCC 13124]
          Length = 494

 Score = 52.1 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG                
Sbjct: 23  REIGYYSTPPFVARYIGKRIID--------INGKGETLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++ R +  K        S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + +++  +  +      GL  +            + +     
Sbjct: 109 YDYYIANPPYNC---HEVNFIKENKERLKNYFNEVGLHNM-------YSMFMSAIIDKAK 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSFF----TAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  + +
Sbjct: 215 LRKGKEYQEK 224


>gi|257888134|ref|ZP_05667787.1| adenine-specific methyltransferase [Enterococcus faecium 1,141,733]
 gi|257896975|ref|ZP_05676628.1| adenine-specific methyltransferase [Enterococcus faecium Com12]
 gi|257824188|gb|EEV51120.1| adenine-specific methyltransferase [Enterococcus faecium 1,141,733]
 gi|257833540|gb|EEV59961.1| adenine-specific methyltransferase [Enterococcus faecium Com12]
          Length = 339

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 134/384 (34%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E    +  + +    
Sbjct: 14  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKK 73

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+    R +S +   L+ +        A   +TP  +  L   L+          +
Sbjct: 74  LSFEPEEW--RRLSQL---LLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 123

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 124 KKEPVKILDIAAGMGNLLLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----- 172

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q     +DL       + +S+ P G  +  + +  ++   + E G
Sbjct: 173 --TSDLTQANVQYFHQD--GLQDLLID-PVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 225

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 226 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 269

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 270 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAKQVKEVLLV---------------- 313

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 314 KLASLKEPEKVTEFFNEFKNWKSS 337


>gi|256960869|ref|ZP_05565040.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256951365|gb|EEU67997.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 2586

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 51/209 (24%)

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            T+ +P+ G G F           G   +       +G EL+  T  +             
Sbjct: 1062 TVLEPSMGIGNFF----------GMLPEKLAAAKLYGVELDDLTGRIAR----------- 1100

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +   K         +       F   + N PFG     DK                  
Sbjct: 1101 --QLYQKADITVDGFERTDHPDDFFDLAVGNVPFGSYQVHDK------------------ 1140

Query: 328  LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              +    +++   +   K       GG  A + +   +    + +     R  L +   +
Sbjct: 1141 --RYDRQNLMIHDYFITKTLDKVRPGGIVAFITTKGTMDKKNSKA-----REALAQKADL 1193

Query: 388  EAIVALPTDLF---FRTNIATYLWILSNR 413
               V LP++ F     T + T +     R
Sbjct: 1194 LGAVRLPSNAFKANAGTEVTTDILFFQKR 1222


>gi|41584550|gb|AAS09913.1| BsmBI M1-M2 methyltransferase fusion protein [Geobacillus
           stearothermophilus]
          Length = 1068

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 90/273 (32%), Gaps = 39/273 (14%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            S+    F TP  +      L L       K+ P  ++++ DP CG G  L  A+     
Sbjct: 119 ASKAYGYFFTPISLGTRMVKLAL-------KDKPKNLKSIVDPACGIGSLLALAL----- 166

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  P I    G EL+  T  +    +  + + L   P+  +         L+ +  
Sbjct: 167 ----IYNPEIENVVGIELDSFTANISHKLLVRISKDLGITPKIKIINQNFLDYVLNYEEE 222

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             ++F   + NPP+G+          KE K+G          K+ + ++L    L  K  
Sbjct: 223 HKEKFDLLIMNPPYGRVRFLKNSLTNKETKSGLTEGISELEKKLREETILNAADLRKKFA 282

Query: 348 LPPNGGGRA-----------AIVLSSSPLFNGRAGSGES-----EIRRWLLENDLIEAIV 391
               G G              IV  +  +      S        E+R++L+EN  I  I 
Sbjct: 283 SVGLGKGTPEYSKVFLAISTKIVKQNGYVIAITPSSWLGDESGRELRKYLVENHGISCIW 342

Query: 392 AL--PTDLFFRTNIATYLWILSNRKTEERRGKV 422
                  LF   N  T +      K      K+
Sbjct: 343 NFKESAKLFSGVNQPTTVV---KIKVNSNESKI 372


>gi|282877469|ref|ZP_06286290.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
 gi|281300410|gb|EFA92758.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
          Length = 622

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 105/309 (33%), Gaps = 31/309 (10%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            E       +   +++   +     F  I  +++ + V    +  ++E +I        E
Sbjct: 35  VEHNTLIRNLLITDESIEEFNALNKFQNILFDVYGEEVSIEKLIELFEFVIS---PAEKE 91

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                 TP  +    T  +L      F+ +      + D +CG GGF    ++++    +
Sbjct: 92  VNGAVYTPIGIRQYITKGVLHN----FEVARWSELQIADISCGCGGFFISLVDYIRSQIN 147

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFT--- 288
                      G ++E  +       + +  +   +  ++ + N+ + ++L+ D  T   
Sbjct: 148 IEYSELYRNFFGVDIEQYSIDRTKILLSLYAIQNGEDIQEFNFNLYRANSLAFDWNTIGV 207

Query: 289 ---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   + NPP+     K  D+ +K   N  + R        S  + L++      
Sbjct: 208 FRQNNGFDIVIGNPPYVGS-SKIADSSKKLLDNWIVTR--------SGKADLYIPFFQIA 258

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404
           +E     G    I +++   +    G      R ++ EN     ++      +F   +  
Sbjct: 259 IECINPNGIVGYITVNN--FYRSLNGRA---FRTYMSENRYDLKMIDFGAEQVFKGRSTY 313

Query: 405 TYLWILSNR 413
           T +  ++  
Sbjct: 314 TCICFITRN 322


>gi|300869710|ref|YP_003784581.1| modification methylase BsuBI [Brachyspira pilosicoli 95/1000]
 gi|300687409|gb|ADK30080.1| modification methylase, BsuBI [Brachyspira pilosicoli 95/1000]
          Length = 406

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 88/251 (35%), Gaps = 51/251 (20%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++    E  +    + TP+ +  L    L++  +            + DP CG+G FL  
Sbjct: 14  LKNTNIEKRKKLGQYFTPKSIRDLLLKELINISEKKDNV------KILDPACGSGEFLLS 67

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +  +             HG +++    ++              +   + +I+   TL
Sbjct: 68  CREYFKNAH----------MHGFDIDESLVSISK------------KLINNADIKCLDTL 105

Query: 283 SKDLFTGKRFHYCLSNPP-FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             D     ++ Y + NPP F  K +K++ +  K+  NG +  F                 
Sbjct: 106 KFDTDKSIKYDYIIGNPPYFEFKLDKEQKSRFKDIINGRVNIF---------------SL 150

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA--IVALPTDLFF 399
                    N  G  A V+  S       G+  S++R +++ N  IE   IV   +D F+
Sbjct: 151 FIKIGLELLNDDGYLAYVVPPSM----NNGAFFSKLREYIINNSSIEYLHIVD-GSDNFY 205

Query: 400 RTNIATYLWIL 410
             N    L IL
Sbjct: 206 MANQKVMLLIL 216


>gi|138896326|ref|YP_001126779.1| adenine-specific methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267839|gb|ABO68034.1| Adenine-specific methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 110/331 (33%), Gaps = 62/331 (18%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            +Y+ + ++  + +F        ++ L    L  +        EL  D   +       E
Sbjct: 3   CTYLEAVAETGENLFHGDVLQDEVSELNAKRLKKQY------RELMLDRFQN-------E 49

Query: 161 HLIRRFGSEVSEGAEDFMTPRD------VVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            + + F   V +G    + P        V      L+           P +  T+ DP  
Sbjct: 50  EIRKAFQLAVLKGMRQHIQPHHQMTPDAVSLFLAYLVRRF------TRPHLALTILDPAV 103

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GT   LT  +N +            +  +G +++     +           ++ ++   +
Sbjct: 104 GTANLLTAVLNGL--------SGKQVKSYGVDVDDLLVKLAYVN-------ANLQKHSLQ 148

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
              Q S   + LF  +     + + P G  +  D D   +     E G+           
Sbjct: 149 LFNQDSL--RPLFV-EPADVIVCDLPVG--YYPDDDNASRFALKAEEGQ----------- 192

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           S    + +   L      GG    ++ ++   + +A     ++ ++L E  +++ ++ LP
Sbjct: 193 SYAHHLLIEQSLRY-TKDGGYLFFLIPNTLFSSPQA----EQLNQFLKETAIVQGVLQLP 247

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGK-VQL 424
             +F     A  ++IL  +    +  K V L
Sbjct: 248 LSMFKHEQAAKSVFILQKKGPMAKPPKNVLL 278


>gi|322509984|gb|ADX05437.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
          Length = 258

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICK 138
            Y      +    +    +    Y   F+ N +    +  +      RL+   L Y +  
Sbjct: 31  IYEIFHDFVFCSAAALRNSIGHRYQNLFNHNIENEYLQRINRYDVSGRLKIKKLFYLLVD 90

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                       P  V+ +IY  L        ++    + TP +V +L   +++      
Sbjct: 91  LCEA-----KGEPYDVLGSIYMEL-----EIGNDHIGQYFTPSEVSNLCAQVVMTDLKKQ 140

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
            +E   +  ++ DP CG G  L   +    +  S  ++   L     +++     +C
Sbjct: 141 LEEEGVI--SISDPACGAGSTLLSTVKLCLE--SKIQVQDHLYIEAADIDRNVALMC 193


>gi|319902461|ref|YP_004162189.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
 gi|319417492|gb|ADV44603.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
          Length = 610

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 93/283 (32%), Gaps = 32/283 (11%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFG----SEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           ++ + D VP   + +I E +I  F                TP+ +       ++      
Sbjct: 41  VDYYSDDVPMVDIKSI-EDVINVFELAIPKAEKTKNGAVYTPKYIRDYILERVVATQKKT 99

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            ++S  +     D +CG G FL    N++           +   +G ++   +   C   
Sbjct: 100 LQDSLAI-----DISCGCGAFLLSLANYLHIHCGQSYHEALQHLYGVDVSELSVKRCKIL 154

Query: 259 MLIRRL-ESDPRRDLSKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKWEKDKDA 311
           + +  L   +   D   ++ QG++L  D            F   + NPP+ +    D   
Sbjct: 155 LSLAALQNGETLADEDFHVSQGNSLDFDFKAMPGVAENGGFDIVVGNPPYVRAKHID--- 211

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              E     L R+       +D  + FL    + L       G    +  +S   +  A 
Sbjct: 212 ---EESKALLSRWQVARCGNADLYLPFLEIAYSIL----CEDGVLGYITLNSFFKSMNA- 263

Query: 372 SGESEIRRWLLENDLIEAIVALPTDL-FFRTNIATYLWILSNR 413
                +R +   ++    I+     L F +T   T + ++   
Sbjct: 264 ---RLLRSYFRNSNTAIEIIDFGHQLVFGKTLAYTCIVLIDKH 303


>gi|261369092|ref|ZP_05981975.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
 gi|282568780|gb|EFB74315.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
          Length = 2744

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 59/250 (23%)

Query: 167  GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +  S     + +P ++V            +  +        + +P+ G G F       
Sbjct: 981  AARASTLTSYYTSP-EIVRAM--------YSTLERFGLQGGNILEPSMGVGAFF------ 1025

Query: 227  VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                             G EL+P T  +               +   K   Q     K  
Sbjct: 1026 ---ANRPASFDESANLFGVELDPVTGRIAK-------------QLYPKANIQICGYEKAT 1069

Query: 287  FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                 F   + N PFG+    D              R+          + L   + A K 
Sbjct: 1070 LPDSYFDVVIGNVPFGQYKVND----------PAFNRY----------NFLIHDYFAAKS 1109

Query: 347  ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNI 403
                  GG  AI+ +S  +          ++R++L     +   V LP   F     T +
Sbjct: 1110 IDKLRVGGIQAIITTSGTM-----DKQTEDVRKYLAARCELIGAVRLPNTAFKALAGTEV 1164

Query: 404  ATYLWILSNR 413
               +  L  R
Sbjct: 1165 TADILFLQKR 1174


>gi|170756850|ref|YP_001782725.1| modification methylase family protein [Clostridium botulinum B1
           str. Okra]
 gi|169122062|gb|ACA45898.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 577

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 67/503 (13%), Positives = 150/503 (29%), Gaps = 94/503 (18%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y   I+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYEFIK-----GIKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------KIPPI 239
           +          + DP+CG G  L     ++ +    +                  K    
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G +++     + +  +               N ++   L +D+     F   + NP
Sbjct: 137 NNLYGFDIDTIAIKILMMDLF-----YLTGYYNKNNFKKKDFLIEDINNN--FDIYIGNP 189

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+         +V+KE+     G++G       D S  F ++  N      N   +   +
Sbjct: 190 PYVGH-----KSVDKEYSMLLKGKYGYVYKDKGDISYCFFINALNY----SNINSKITFI 240

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNR 413
            S   + +    +    +R++L EN  I  I+      F+         I   +  +   
Sbjct: 241 TSRYFMESKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291

Query: 414 KTEE-------RRGKV---QLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSR 459
            + +       R  KV      N  D +        + +    ++ DD  R I++   ++
Sbjct: 292 ISNKVEIIKPCRYEKVKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDGSRDIINKIENK 351

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            N     +            ++     +FI+D+  +          K   L +S     +
Sbjct: 352 TNKTLGEICT------SYQGIITGCDKAFIVDEKTI----------KKENLERSIIKPWI 395

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           K          + +SF+  S      K          I+  I  +  K            
Sbjct: 396 KSSYINREKINFRDSFIIYSDLIENVKKY------PNIIRHIEKYKDKLENRRECKKKVR 449

Query: 580 EWIPDTNLTEYENVPYLESIQDY 602
           +W       +++     + I  Y
Sbjct: 450 KWYELQWGRKFDIFEDKKIIFPY 472


>gi|293571357|ref|ZP_06682388.1| adenine-specific methyltransferase [Enterococcus faecium E980]
 gi|291608573|gb|EFF37864.1| adenine-specific methyltransferase [Enterococcus faecium E980]
          Length = 335

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 133/384 (34%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E A  +  + +    
Sbjct: 10  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETAQRITALYEELKK 69

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+         + + L+ +        A   +TP  +  L   L+          +
Sbjct: 70  LSFEPEEW-----RRLSQLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 119

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 120 KKEPVKILDIAAGMGNLLLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----- 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q     +DL       + +S+ P G  +  + +  ++   + E G
Sbjct: 169 --TSDLTQANVQYFHQD--GLQDLLID-PVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 221

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 222 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 265

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 266 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAKQVKEVLLV---------------- 309

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 310 KLASLKEPEKVTEFFNEFKNWKSS 333


>gi|311109965|ref|YP_003982816.1| hypothetical protein AXYL_06819 [Achromobacter xylosoxidans A8]
 gi|310764654|gb|ADP20101.1| hypothetical protein AXYL_06819 [Achromobacter xylosoxidans A8]
          Length = 283

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD-ALFKESPGMIRTLYD 211
             + ++Y  L        + G   F TP +V  L   +L    D A      G   TL D
Sbjct: 92  DFLGSLYMGL-----DLGNAGTGQFFTPYEVSLLMAKMLHGQRDLAELVRERGGFITLND 146

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G G  L  A     D G        L   G +++     +    + +  + +   + 
Sbjct: 147 PCIGGGAMLIAAAEQFRDQG--LPSHRTLHVTGVDIDRTAVQMSYIQLSLLNVPAILLQG 204

Query: 272 LSKNIQ 277
            S + +
Sbjct: 205 NSLSPE 210


>gi|257899565|ref|ZP_05679218.1| adenine-specific methyltransferase [Enterococcus faecium Com15]
 gi|257837477|gb|EEV62551.1| adenine-specific methyltransferase [Enterococcus faecium Com15]
          Length = 339

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/384 (14%), Positives = 135/384 (35%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E A  +  + +    
Sbjct: 14  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPAKETAQRITALYEELKK 73

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+    R +S +   L+ +        A   +TP  +  L   L+          +
Sbjct: 74  LSFEPEEW--RRLSQL---LLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 123

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 124 KKEPVKILDIAAGMGNLLLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----- 172

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q     +DL       + +S+ P G  +  + +  ++   + E G
Sbjct: 173 --TSDLTQANVQYFHQD--GLQDLLID-PVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 225

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 226 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 269

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 270 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAKQVKEVLLV---------------- 313

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 314 KLASLKEPEKVTEFFNEFKNWKSS 337


>gi|260575999|ref|ZP_05843993.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
 gi|259021698|gb|EEW25000.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
          Length = 1629

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/428 (13%), Positives = 119/428 (27%), Gaps = 45/428 (10%)

Query: 43   RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNLE 101
            RL   L+   +  R  + AF G   D  +     G +    +++ ++  +  T    +  
Sbjct: 749  RLTALLKDPDTEARRAFDAFLGELRDDLNDTISEGDAIEMLAQHIITRPVFETLFEGHKF 808

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            +     S   + + +  + ++           Y   K  S     P      ++  +Y+ 
Sbjct: 809  TAENPVSRAMQRVLDVLNEANLDKESRDLEKFYASVKLRSQGITDPQAKQKLIV-ELYDK 867

Query: 162  LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFL 220
              RR     +E      TP ++V      + +   + F ++       + DP  GTG F+
Sbjct: 868  FFRRAFPRTTEKLGIVYTPVEIVDFIIHSVNEVLQSEFGQTLGSPGVHIIDPFTGTGTFI 927

Query: 221  TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESD----------- 267
            T  +          +       H  E+    + +    +  +   L+             
Sbjct: 928  TRLLQSGLIAPEEMEHKFRHEIHANEIVLLAYYIAAINIEAVYHGLQGGEYVPFEGICLT 987

Query: 268  ------PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                     DL  +    ++  +           + NPP+      D D        G  
Sbjct: 988  DTFQMYESDDLISHYMPDNSERRKRQKATDIRVIIGNPPYSAGQGSDNDEAANVRYTGLD 1047

Query: 322  GRFG--PGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             R           +   L+  ++             G  A V ++  +    A      +
Sbjct: 1048 NRIQQTYAARSTGNPRSLYDSYIRAIRWASDRIGSEGVLAYVTNAGWVEGKAADG----L 1103

Query: 378  RRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKV 422
            R  L E      I  L  +              +F   +     + +    +    RG +
Sbjct: 1104 RACLAEEFTDLYIFHLRGNQRTSGEQSRREGGKIFGSGSRAPIAISVFVKSEKRAERGNI 1163

Query: 423  QLINATDL 430
               +  D 
Sbjct: 1164 YFHDIGDY 1171


>gi|268680121|ref|YP_003304552.1| hypothetical protein Sdel_1501 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618152|gb|ACZ12517.1| protein of unknown function DUF450 [Sulfurospirillum deleyianum DSM
           6946]
          Length = 974

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/446 (11%), Positives = 127/446 (28%), Gaps = 102/446 (22%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             +   E       + ++E    F           +   Y  Y+  ++    + + N + 
Sbjct: 233 IFILFAEDRALLRHNTIKEIREEFANQ--------RFTDYKLYDIFKFYFDGINTGNAKL 284

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N+  Y           F   +F  ++        L    +  S  +   D   + ++ +I
Sbjct: 285 NIPKYNGGL-------FATDEFLDSLK--IDDVCLDANAQKLSNYDFVSDISVN-ILGHI 334

Query: 159 YEHLIRRFGS--------------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +E  +                      +    F TP  +        L       KE+  
Sbjct: 335 FEQSLSDLEELNASINDLAFDKKNSKRKKDGVFYTPEYITRYIVENTLGKLCEEQKEALH 394

Query: 205 -------------------------------MIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                                          +   + DP CG+G FL  A+ ++      
Sbjct: 395 VKSVEAPKNSKKPTKEEALTKENLERYKEWLLHVKILDPACGSGAFLNQALEYLIKEHKE 454

Query: 234 HKIPPILV-----------------PHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKN 275
            +    ++                  +G ++  +   +    + +R   +     +LS  
Sbjct: 455 LQEKLAIMGDITAYYEIEASILENNLYGVDINEDAVEIARLSLWLRTAQKGRALANLSDK 514

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+  ++L +  F    F   + NPP+ +     ++A++   K   + +F       S   
Sbjct: 515 IKCANSLLEMPFEENSFDVVIGNPPYVR-----QEAIDNIIKEQYMQKFQ--NVATSTAD 567

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR----RWLLENDLIEAIV 391
           +   ++            G    +  +  +      +    ++    + L+    +    
Sbjct: 568 L--YVYFYELSINLLKENGILGFITPNKWMERKYGVNLRKYLKPYAIQKLVNFGEL---- 621

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEE 417
               ++F   +    + IL N+K++ 
Sbjct: 622 ----NIFEDASTEPAIIILENKKSDN 643


>gi|77406070|ref|ZP_00783145.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|77175303|gb|EAO78097.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1355

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIADN------- 784

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R             +   +   K     + GG+ AI+ S+  +           
Sbjct: 785 ---RYDRP-----------YMIHDYFVKKSLDLLHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T++ T +      
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 865


>gi|317182420|dbj|BAJ60204.1| Type II modification enzyme [Helicobacter pylori F57]
          Length = 597

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V + ++E+L+ +   E         TP+ +            + L          + DP
Sbjct: 66  DVFNALFENLLDQ---ERKTKFGMIFTPKYIADFICNETFAKFEDLNNI------KVIDP 116

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESD-PRR 270
            CG G FL  A+  +           I     G +++ +     +  + I  L  +    
Sbjct: 117 CCGCGIFLISAIEQIKSKTKKSIKQIIKNQIFGLDIDNDNVKKVILLLKIMGLVYNENIE 176

Query: 271 DLSKNIQQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           D   NI+   +L  D        F   + NPP+       K                   
Sbjct: 177 DCDINIRHCDSLITDWKLAFDIDFDCIIGNPPYINPHSLSKKQT---------AFLKQNF 227

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              S G                   G  + ++ ++      A      I  +L E
Sbjct: 228 QTTSSGVFNIFYAFIELGMKFIKPNGFLSYIVPNNFFTISAAKPLRDFIEPYLCE 282


>gi|296100883|ref|YP_003611029.1| hypothetical protein ECL_00514 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055342|gb|ADF60080.1| hypothetical protein ECL_00514 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 228

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + R EK  +  ++ +  + +    D  P   +  ++  L         +    F TP ++
Sbjct: 57  VGRYEKTDIS-RMAQLLAHVTNGLDETPGDFLGRVFMQL-----ELGDKYRGQFFTPWNI 110

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             +   + L   +  F++ P +  TL +P CG G         + + G  +     L   
Sbjct: 111 GLMMARMQLGNVEDNFRDKPFI--TLSEPACGAGCMALAFAFVLREAG--YSPHRYLWVS 166

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            Q+++P    +    + +  +  +     S N ++   L     
Sbjct: 167 AQDIDPLAAGMAYIQLSLSGVPGEVVIGNSLNDERRRILHTPAH 210


>gi|260222775|emb|CBA32671.1| hypothetical protein Csp_D33310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 396

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 85/260 (32%), Gaps = 43/260 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R   S   +    F+TP  + +L  +LL           P    ++ +   G G  L  
Sbjct: 1   MRNRYSSAKQELGQFLTPAPIANLLASLL-----------PPGGESILELGAGAGALLEA 49

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + +           +       L+ E  A  +A +LI    + P+       +     
Sbjct: 50  VSSRMPHLDVTAVEKDVA------LKRELRARGLASLLIGGDATSPKTIRRLAERAP--- 100

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                    F Y + NPP+     +       E           GL     G  L    L
Sbjct: 101 ---------FDYIVGNPPYAMGVSRKASIKLLE---------QYGLYNAQRGVRLDTYFL 142

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           A  + +    G  A I+    PLF+  + +     R+ LL+      IV LP D F    
Sbjct: 143 AQSISMMATTGAGAFILPM--PLFSDGSYA---TFRQALLQRFSNITIVELPIDTFGNAE 197

Query: 403 IATYLWILSNRKTEERRGKV 422
           ++T +   S  +   +R KV
Sbjct: 198 VSTAICSFSGLEGRRKRVKV 217


>gi|153955772|ref|YP_001396537.1| DNA modification methyltransferase [Clostridium kluyveri DSM 555]
 gi|146348630|gb|EDK35166.1| Predicted DNA modification methyltransferase [Clostridium kluyveri
           DSM 555]
          Length = 587

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 110/309 (35%), Gaps = 41/309 (13%)

Query: 160 EHLIRRFGSEV--SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           E+  +++   V  ++ A    T R++ +     L++  D ++         + DP CG G
Sbjct: 41  EYFSQKYYELVSINKRAGIVYTQRELSYFMIKNLIEEKDVIY----NPFVKIVDPACGCG 96

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKN 275
             L+    ++      +      V +         +H VC   +    ++    + L+ +
Sbjct: 97  NILSVCFFYLRHIFIKNIEVINNVNNINLKLENINSHIVC-NNLFGFDIDEIALKILNID 155

Query: 276 -------IQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                   Q+ + + KD       K+F   + NPP+      +K   E       L R  
Sbjct: 156 LFSISGEFQKENFVLKDFLIDAIEKKFDIFIGNPPYIGHKSIEKKYSET------LKRVY 209

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K  D S ++       L+      G+AA +      +   A SG  ++R +L  N 
Sbjct: 210 KNIYK--DKSDVYYCFFEKSLK-SLEKAGKAAFITPR---YFCEACSG-KQLREFLSTNT 262

Query: 386 LIEAIVAL----PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            I  IV      P   F    +   +    N+K    + ++   + ++     RN+    
Sbjct: 263 TIYKIVDFYGIRP---FKGVGVDPIIIFFRNKKGLNNKIEIIKPDKSE--KKGRNKFYDS 317

Query: 442 RIINDDQRR 450
             +N D+ R
Sbjct: 318 LFLNKDKIR 326


>gi|298383504|ref|ZP_06993065.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298263108|gb|EFI05971.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1076

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 89/298 (29%), Gaps = 62/298 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H          
Sbjct: 105 FYTPKEITDTLADVLADYSVRPT--------RMLEPSAGVGVFVDSVLRH---------- 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++R L  D +       +       +      F   +
Sbjct: 147 SPGADVMAFEKDLLT------GTILRHLYPDKKTRTCGFEK------IERPFNNYFDLAM 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      K+G  GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----EKSGSFGRR--------SAQKAIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND-----DQRRQILDIYVSRENGKFSR 466
            +++   +       D       +   +  + D         +I+      +   + +
Sbjct: 298 LSKKEMSQ-------DERLMTVIQTDTKTDLTDNAYFIHHPERIVHTTAKLDTDPYGK 348


>gi|255690417|ref|ZP_05414092.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
 gi|260624100|gb|EEX46971.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
          Length = 1926

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFSGSKDPARHSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|160890942|ref|ZP_02071945.1| hypothetical protein BACUNI_03387 [Bacteroides uniformis ATCC 8492]
 gi|156859941|gb|EDO53372.1| hypothetical protein BACUNI_03387 [Bacteroides uniformis ATCC 8492]
          Length = 1926

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFSGSKDPARHSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|329927481|ref|ZP_08281705.1| conserved domain protein [Paenibacillus sp. HGF5]
 gi|328938445|gb|EGG34832.1| conserved domain protein [Paenibacillus sp. HGF5]
          Length = 335

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K F   L+NPPF  +    +     +      G  G    ++    MLF   L     
Sbjct: 43  KNKLFDLVLANPPFEVEKLPLEIKTIIQKLFPNHGLNGNVFNRLESTMMLFNSLLVK--- 99

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  A V+  S L        +  +RR+  +   ++ I+ LP D F   NI T L
Sbjct: 100 ----PDGTLASVVPISLL----NAENQVSLRRYFADTYHLDKIIYLPDDAFGAENIRTAL 151

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L    +++       I+    + + +     R+ I D    Q+ DI  ++ +   S +
Sbjct: 152 VLLKKSASKKHTTVYLAIDGNQNYITKKVGSISRKKILD-GLWQLTDISSTKISNDISII 210

Query: 468 LDY 470
            + 
Sbjct: 211 RNN 213


>gi|253755095|ref|YP_003028235.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
 gi|251817559|emb|CAZ55306.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
          Length = 2281

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 60/220 (27%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 701 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 751

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L      ++              F    F   +SN PF      D        
Sbjct: 752 ------HLHPTSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIAD-------- 790

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+        +   +   +   K     + GG+ AI+ S+  +           
Sbjct: 791 -----NRY--------NKPYMIHDYFVKKSLDLVHDGGQVAIISSTGTMDKRT-----EN 832

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T++ T +      
Sbjct: 833 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 872


>gi|193214047|ref|YP_001995246.1| Eco57I restriction endonuclease [Chloroherpeton thalassium ATCC
           35110]
 gi|193087524|gb|ACF12799.1| Eco57I restriction endonuclease [Chloroherpeton thalassium ATCC
           35110]
          Length = 401

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 66/244 (27%), Gaps = 42/244 (17%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  +      TP +V+    +L         K        + +P CG   FL        
Sbjct: 2   KTKKALGAVSTPPEVIRFMLSLFSPTKTDSLK--------VLEPACGDAPFL-------- 45

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 K        G E + ET                P    + + +Q   L  D   
Sbjct: 46  -QAFQEKFGDKHALFGVEYDAETLR--------------PPALPNFHFEQTDFLLWD--D 88

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L NPP+G   ++    +          R          G          +   
Sbjct: 89  ERKFDLILGNPPYGIIGDRSHYPIYTFKDMKAAYRQRSETWH---GKYNIYGAFIEQAVK 145

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G    V+ S+ +           +R++L E+  +  +  L   +F    +   + 
Sbjct: 146 RLGDAGELIFVVPSTWMLLQD----FKLLRKFLAESGELH-VYYL-GRIFPGVQVTAVVI 199

Query: 409 ILSN 412
            L  
Sbjct: 200 HLKK 203


>gi|23099647|ref|NP_693113.1| hypothetical protein OB2192 [Oceanobacillus iheyensis HTE831]
 gi|22777877|dbj|BAC14148.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 332

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 108/329 (32%), Gaps = 48/329 (14%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           E   + L  T T N  ++   +F D+     E   F   +         +K+ +  S I+
Sbjct: 7   ELIFNWLDKT-TENVQQAKNETFLDSLVLTLEML-FEKDVPENFDDIAKHKLNQLLSEIK 64

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +      +         L      + S   +  MTP  V  L  + L +   +  KE   
Sbjct: 65  VSDFQHEEIRKGISLAILKGM---KGSTQQQHLMTPDTVS-LIVSYLANKLLSSQKEV-- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               L+DP  GTG  LT  MN +            +  +  E++P    + V    ++  
Sbjct: 119 ---ALFDPASGTGNLLTAVMNQL---------DKDVAAYAAEVDPTLIGLAVLNANLQEK 166

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E +     S             F  +     +S+ P G  +  D  A + E K+ E   +
Sbjct: 167 EVEFFHQDSLRP----------FLMEPVDIVISDLPVG-YYPDDVSASDYELKSDEGHSY 215

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                       LF+      ++     G     V+      + ++     ++  +L ++
Sbjct: 216 SHH---------LFIEQSLTYMK----EGAYFVGVVPEFLFDSDQSD----KLHAFLQKH 258

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             I  ++ LP   F     A  + IL  +
Sbjct: 259 AHIVGVIRLPESAFKSKQQAKSILILQKK 287


>gi|289810867|ref|ZP_06541496.1| hypothetical protein Salmonellaentericaenterica_43567 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 155

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 28/158 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+          +     YL  G    DL+S +      FY      L  LG     
Sbjct: 12  LLFLKM------CKETGQEADYLPEGYRWDDLKSRIDQEQLQFY---RKMLVHLGED--- 59

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVM 155
                         K       F +    + +   + ++  N   ++ +  T        
Sbjct: 60  --------------KKKLVQAVFHNVCTTITEPKQITELVSNMDSLDWYSGTRGKSRDDF 105

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            ++YE L+++  +E   GA  + TPR ++     LL  
Sbjct: 106 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKP 143


>gi|18138464|ref|NP_542568.1| putative methyltransferase-endonuclease [Halorubrum phage HF2]
 gi|32453891|ref|NP_861654.1| putative methyltransferase-endonuclease [Halovirus HF1]
 gi|18000405|gb|AAL54988.1| putative methyltransferase-endonuclease [Halorubrum phage HF2]
 gi|32346459|gb|AAO61365.1| putative methyltransferase-endonuclease [Halovirus HF1]
          Length = 1288

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           FS ++   + +   ++ ++Y+H    F  E  +   +F TP+ V+           D + 
Sbjct: 377 FSVLKFDFEEIEGDLLGDLYQH---YFDPETRKALGEFYTPQPVIDYIM-------DGVD 426

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                    L DP+CG+G FL +A+N   +    +   P    H  +L    H V +
Sbjct: 427 YNVGVSGERLIDPSCGSGTFLVEAVNRYIEDVKRYNDDPDWEEHLTDLCTTPHIVGL 483


>gi|255027628|ref|ZP_05299614.1| type II restriction enzyme, methylase subunit [Listeria
           monocytogenes FSL J2-003]
          Length = 378

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 28/175 (16%)

Query: 104 IASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIEL-----HPDTVPDRVMS 156
           +     NA   F    FDF   I  LE       I + F+ +           V   ++S
Sbjct: 59  LKILFKNADKKFNSGLFDFLEDILSLEVQIDSNVIIEIFNELYFPQSPYDFSVVDSTILS 118

Query: 157 NIYEHLIRR-------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            IYEH + R                EVS  +    TP+ +V       L P  A      
Sbjct: 119 QIYEHFLSRRIIINEDRTFSLIEAPEVSASSGVVSTPKIIVEQIVHETLTPLVADKSFDE 178

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                + D  CG+G FL  A + + +             + +EL+ +++ V    
Sbjct: 179 LNQLKIADICCGSGTFLISAYDFIIEKKMER--------YIKELKNDSNLVYRMN 225


>gi|196249948|ref|ZP_03148643.1| N-6 DNA methylase [Geobacillus sp. G11MC16]
 gi|196210462|gb|EDY05226.1| N-6 DNA methylase [Geobacillus sp. G11MC16]
          Length = 329

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 110/331 (33%), Gaps = 62/331 (18%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            +Y+ + ++  + +F        ++ L    L  +        EL  D   +       E
Sbjct: 25  CTYLEAVAETGENLFHGDVLQDEVSELNAKRLKKQY------RELMLDRFQN-------E 71

Query: 161 HLIRRFGSEVSEGAEDFMTPRD------VVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            + + F   V +G    + P        V      L+           P +  T+ DP  
Sbjct: 72  EIRKAFQLAVLKGMRQHIQPHHQMTPDAVSLFLAYLVRRF------TRPHLALTILDPAV 125

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GT   LT  +N +            +  +G +++     +           ++ ++   +
Sbjct: 126 GTANLLTAVLNGL--------SGKQVKSYGVDVDDLLVKLAYVN-------ANLQKHSLQ 170

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
              Q S   + LF  +     + + P G  +  D D   +     E G+           
Sbjct: 171 LFNQDSL--RPLFV-EPADVIVCDLPVG--YYPDDDNASRFALKAEEGQ----------- 214

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           S    + +   L      GG    ++ ++   + +A     ++ ++L E  +++ ++ LP
Sbjct: 215 SYAHHLLIEQSLRY-TKDGGYLFFLIPNTLFSSPQA----EQLNQFLKETAIVQGVLQLP 269

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGK-VQL 424
             +F     A  ++IL  +    +  K V L
Sbjct: 270 LSMFKHEQAAKSVFILQKKGPMAKPPKNVLL 300


>gi|299144396|ref|ZP_07037476.1| type I restriction-modification system, M subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518881|gb|EFI42620.1| type I restriction-modification system, M subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 56

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +        ++   YE+ I +F +       +F TP  +V    A+L   ++ 
Sbjct: 1   MDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVRTIVAILKSFNNC 53


>gi|228476638|ref|ZP_04061318.1| type I restriction enzyme EcoprrI M protein [Streptococcus
           salivarius SK126]
 gi|228251736|gb|EEK10810.1| type I restriction enzyme EcoprrI M protein [Streptococcus
           salivarius SK126]
          Length = 80

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +  +  D       NI  G+TL    F   + F   +SNPP+  KW    D      +  
Sbjct: 1   MHNINYDK-----FNIVLGNTLLNPHFGDDKPFDAIVSNPPYSVKWIGSDDPTLINDE-- 53

Query: 320 ELGRFGPG--LPKISDGSMLFLMHLANKL 346
              RF P   L   S     F++H  N L
Sbjct: 54  ---RFAPAGVLAPKSKADFAFVLHALNYL 79


>gi|94265472|ref|ZP_01289222.1| hypothetical protein MldDRAFT_4858 [delta proteobacterium MLMS-1]
 gi|93454014|gb|EAT04355.1| hypothetical protein MldDRAFT_4858 [delta proteobacterium MLMS-1]
          Length = 204

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELEPETHAVCVAGMLIRR 263
             L DP  GTGGFL  A +H+ +     +    L      G ++  E   +C   + +  
Sbjct: 116 NKLSDPAYGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHG 175

Query: 264 LES 266
           L +
Sbjct: 176 LGN 178


>gi|254297091|ref|ZP_04964544.1| putative type II DNA modification enzyme [Burkholderia pseudomallei
           406e]
 gi|157806923|gb|EDO84093.1| putative type II DNA modification enzyme [Burkholderia pseudomallei
           406e]
          Length = 1631

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 79/296 (26%), Gaps = 56/296 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST---- 90
           +  F  L  +E            + +        L    + A           L      
Sbjct: 295 VYRFIFLLTIEERGLLHPEQADPEAVRLYQDGYSLRRLRERARRRRAWDRHADLWQGIKP 354

Query: 91  ----LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSG 142
               L S      L +    F+ +     +  +  ++                     + 
Sbjct: 355 VFTGLASGQPLLALPALGGLFAADQCPDLDGAELGNSTLLTAVHKLAWMHEDNSLTRINW 414

Query: 143 IELHPDTVPDRVMSNIYEHLIR------------RFGS------EVSEGAEDFMTPRDVV 184
            ++ P+      + ++YE L+             RF +         + +  + TP  +V
Sbjct: 415 RDMGPEE-----LGSVYESLLELVPQVAQDGRVFRFANAEQSQGNARKTSGSYYTPDPLV 469

Query: 185 HLATALLLDPD------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
                  L+P        A   ++  +  T+ DP CG+G FL  A   +A+  +  +   
Sbjct: 470 QELLDSALEPVIHQRIAGATDPQAALLSITICDPACGSGHFLLAAARRLANHLAQSRAQG 529

Query: 239 ILV---------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                              +G +L P    +    + +  +  +       +  Q 
Sbjct: 530 TPSGSDYRHALRDVISHCIYGVDLNPLALELARMSLWLEAMTPEKPLGFLDHHLQC 585


>gi|168209831|ref|ZP_02635456.1| N-6 DNA methylase [Clostridium perfringens B str. ATCC 3626]
 gi|168214951|ref|ZP_02640576.1| N-6 DNA methylase [Clostridium perfringens CPE str. F4969]
 gi|170712110|gb|EDT24292.1| N-6 DNA methylase [Clostridium perfringens B str. ATCC 3626]
 gi|170713626|gb|EDT25808.1| N-6 DNA methylase [Clostridium perfringens CPE str. F4969]
          Length = 494

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 76/250 (30%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G  +TL+DP CG                
Sbjct: 23  REIGYYSTPPFVARYIGKRIID--------INGKGKTLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++ R +  K        S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + +++  +  +      GL  +            + +     
Sbjct: 109 YDYYIANPPYNC---HEVNFIKENKERLKNYFNEVGLHNM-------YSMFMSAIIDKAK 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSFF----TAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  ++ 
Sbjct: 215 LRKGKEYQKE 224


>gi|330904441|gb|EGH35013.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 61

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           GG L  A   + + G   +        GQE      ++    ML+  + +   ++
Sbjct: 1   GGMLIAAKEFIDEHGEDGRKAN---LFGQEFNGTVWSIAKMNMLLHGISTADLQN 52


>gi|317010034|gb|ADU80614.1| hypothetical protein HPIN_07115 [Helicobacter pylori India7]
          Length = 797

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 30/246 (12%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++   + A+    +  E F      +   T    L+ L     
Sbjct: 173 RYLKEALIQNQEKTQVSSIFNNFKAYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPD 152
           + NL++  +    N   I E  DF   +  +++       +     +   + +  D   D
Sbjct: 231 KINLDNVRSFIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMVSILKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQELEPETHA 253
                L D   GTG FL +A     +              K   +L   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM 259
           +    +
Sbjct: 411 IAHLNL 416


>gi|58039940|ref|YP_191904.1| putative type II DNA modification enzyme [Gluconobacter oxydans
           621H]
 gi|58002354|gb|AAW61248.1| Putative type II DNA modification enzyme [Gluconobacter oxydans
           621H]
          Length = 1610

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 79/296 (26%), Gaps = 50/296 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87
           +     L   E            +          L +    A         +        
Sbjct: 281 VYRLIFLMVAEDRNLLHPETASLEARKLYAEGYSLAALRAQAIRRAAWDRHHDRYEGIKI 340

Query: 88  -LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     R  L +    FS +     E     +         L +   K    + ++
Sbjct: 341 VFRALAHGEERLGLPALGGLFSADRLPHLETARLRNRAFMDAIYQLGWLSGKT-GKVPVN 399

Query: 147 PDTVPDRVMSNIYEHLIR------------RFGSEVSEGAED-------FMTPRDVVHLA 187
              +    + ++YE L+              F SE +E   +       + TP  +V L 
Sbjct: 400 WQAMQTEELGSVYESLLELQPQLGDDGKTLAFASETAEKRGNQRKATGSYYTPDSLVQLL 459

Query: 188 TALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
               LDP     +          +  T+ DP CG+G FL  A   +A   + H+   +  
Sbjct: 460 LDTTLDPVLDRAETQTANPAGALLNLTVIDPACGSGHFLLAAARRIATRVARHRADGLPS 519

Query: 242 ---------------PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                           +G +  P    +    + I  LE   P       I+ G +
Sbjct: 520 MADYRHALREVASRCLYGVDRNPMAVELSKVALWIEALEPGRPLAFFDAQIRCGDS 575


>gi|258648634|ref|ZP_05736103.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260851424|gb|EEX71293.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 1946

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  D       
Sbjct: 105 FYTPKEITDTLADMLADYSVRPA--------RMLEPSAGVGVFVDSVLRHSPDADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +       +       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDKKTRTCGFEK------IEKPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      K+G  GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----EKSGSFGRR--------SAQKAIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQADLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|227552639|ref|ZP_03982688.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecium TX1330]
 gi|293378669|ref|ZP_06624828.1| N-6 DNA Methylase [Enterococcus faecium PC4.1]
 gi|227178265|gb|EEI59237.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecium TX1330]
 gi|292642709|gb|EFF60860.1| N-6 DNA Methylase [Enterococcus faecium PC4.1]
          Length = 335

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 132/384 (34%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E    +  + +    
Sbjct: 10  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKK 69

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+         + + L+ +        A   +TP  +  L   L+          +
Sbjct: 70  LSFEPEEW-----RRLSQLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 119

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 120 KKEPVKILDIAAGMGNLLLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----- 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q     +DL       + +S+ P G  +  + +  ++   + E G
Sbjct: 169 --TSDLTQANVQYFHQD--GLQDLLID-PVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 221

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 222 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 265

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 266 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAKQVKEVLLV---------------- 309

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 310 KLASLKEPEKVTEFFNEFKNWKSS 333


>gi|331088991|ref|ZP_08337898.1| hypothetical protein HMPREF1025_01481 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330406443|gb|EGG85956.1| hypothetical protein HMPREF1025_01481 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 2416

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 73/265 (27%), Gaps = 60/265 (22%)

Query: 153  RVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                 +YE+L    + + +      F TP  V+             +          + +
Sbjct: 1183 DEFIELYENLSPEEYRAAMESTLTAFYTPPVVIKAM--------YGVLDRLGYEKGNMLE 1234

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            P+CGTG F           G   +       +G EL+  T  +              ++ 
Sbjct: 1235 PSCGTGNFF----------GLIPEKMAGSKLYGVELDDLTGRIAK---------QLYQKA 1275

Query: 272  LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                     T   D      F   L N PFG                     F     + 
Sbjct: 1276 TIAVQGFEDTKLPDDH----FDVVLGNVPFGD--------------------FRVNDSRY 1311

Query: 332  SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 L   +   K       GG   ++ S   +          E+R+++ +   +   +
Sbjct: 1312 EQQKFLIHDYFFAKALDKVKAGGVVMLLTSKGTMDKASP-----EVRKYIAQRAELLGAI 1366

Query: 392  ALPTDLF---FRTNIATYLWILSNR 413
             LP + F     T + + + IL  R
Sbjct: 1367 RLPDNTFKANAGTEVTSDILILKKR 1391


>gi|302668857|ref|YP_003832682.1| hypothetical protein bpr_II162 [Butyrivibrio proteoclasticus B316]
 gi|302397197|gb|ADL36100.1| hypothetical protein bpr_II162 [Butyrivibrio proteoclasticus B316]
          Length = 244

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 13/174 (7%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L+ D   D  + ++Y  L     S          TP  V  +   +  D  +   K+   
Sbjct: 79  LNEDPNQD-FLGDMYMKL-----SMGERAWGQIFTPYHVCEMMAQMTFDSPEKDIKDHGY 132

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +  T  DP  G G  L  +   + D G   K   I V  GQ+++     +    +    +
Sbjct: 133 V--TTLDPAVGGGAMLIASAQALRDAGYDPKTQMIAV--GQDVDITAVYMAFVQLA---I 185

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              P   +  +          LF      Y  +   F K W + + A  +E ++
Sbjct: 186 IGCPAVVVHGDSLAEPYTGNPLFVDDNSSYWYTPMLFTKAWFERRKAFIEELRD 239


>gi|157419748|gb|ABV55437.1| SNF2-related helicase [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 2278

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 698 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 748

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 749 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIADN------- 788

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R             +   +   K     + GG+ AI+ S+  +           
Sbjct: 789 ---RYDRP-----------YMIHDYFVKKSLDLLHDGGQVAIISSTGTMDKRT-----EN 829

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T++ T +      
Sbjct: 830 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 869


>gi|210613247|ref|ZP_03289630.1| hypothetical protein CLONEX_01837 [Clostridium nexile DSM 1787]
 gi|210151246|gb|EEA82254.1| hypothetical protein CLONEX_01837 [Clostridium nexile DSM 1787]
          Length = 2401

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 72/253 (28%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +     F T   V+     +L +               + +P+CG G F+   
Sbjct: 1167 EEYSAARASTLNAFYTSPTVIRSMYEVLENMGLKQGN--------ILEPSCGVGNFMGLI 1218

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +               +   KN        
Sbjct: 1219 PESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFE 1255

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  +    F   + N PFG     D+   ++ H                    +   +  
Sbjct: 1256 ETSYPDSFFDCVIGNVPFGAYQVSDR-RYDRHH-------------------FMIHDYFI 1295

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
             K       GG  A+V SS  +           +R+++     +   + LP + F     
Sbjct: 1296 AKSLDLVRPGGVVAVVTSSGTMDKQNP-----AVRQYIANRAELLGAIRLPNNAFQRNAN 1350

Query: 401  TNIATYLWILSNR 413
            T++ + +     R
Sbjct: 1351 TSVVSDILFFQKR 1363


>gi|227539388|ref|ZP_03969437.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240701|gb|EEI90716.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1748

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 60/250 (24%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V+   ++ L        +++   I    +P+ G G F+                
Sbjct: 105 FYTPPKVIDAISSAL--------RDNGLHIDKFLEPSAGIGSFIQSFSE----------- 145

Query: 237 PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                    E +  T  +       + + I   E  P R+ +                  
Sbjct: 146 NQTASVTAYEKDLLTGKILKQLYPDSNIRINGFEEIPEREQNS----------------- 188

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +    SN PFG     D    +  +              I +   L    +         
Sbjct: 189 YDIIASNIPFG-----DTSVFDLSYSRSRNSAKEQAARSIHNYFFLKGADMLR------- 236

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
            GG  A + S   L + +       IRR L++++ + ++V LP +LF     T + + L 
Sbjct: 237 EGGLLAYITSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLI 292

Query: 409 ILSNRKTEER 418
           IL     ++ 
Sbjct: 293 ILQKNTAKKN 302


>gi|312114179|ref|YP_004011775.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219308|gb|ADP70676.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 253

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 38/201 (18%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           +   K+AG  F+   +  L    +   R           D    +   +       +   
Sbjct: 14  QELRKIAGERFFRVFDDWLELALAAYARE---------EDRYMEVIRRYG-PREAGKEHP 63

Query: 130 AGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVH 185
           A            +E+H D         +  IYE          SE A   + +P  +  
Sbjct: 64  ADHFAHALGAI-QLEMHKDNQTGTLRDHLGEIYE------AEGGSERAMSQYFSPMPLCR 116

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   +L+D       +S     ++ DP CG+G  L   +           + P     G 
Sbjct: 117 MMAFMLID-------DSTPERASIADPACGSGRMLMACIP----------LRPQGYFFGV 159

Query: 246 ELEPETHAVCVAGMLIRRLES 266
           +L+     +    +L R ++S
Sbjct: 160 DLDRTCAKMAALNLLWRNVDS 180


>gi|323127133|gb|ADX24430.1| SNF2 family protein [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 2274

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIADN------- 784

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R             +   +   K     + GG+ AI+ S+  +           
Sbjct: 785 ---RYDRP-----------YMIHDYFVKKSLDLLHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T++ T +      
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 865


>gi|301063312|ref|ZP_07203857.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300442609|gb|EFK06829.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 1020

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 83/270 (30%), Gaps = 41/270 (15%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLI---RRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +F         +P   +S IYE  +      G+   + A  + TP  +V+     L    
Sbjct: 273 HFDFQAYDFSYIPIETLSIIYEQFLHSSEEDGTTKGKKAGAYYTPLPLVNFVLNELETRY 332

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPP-------ILVPHGQE 246
             +            DP+CG+G FL      +       +  I P       +    G +
Sbjct: 333 PLV------EGMRTLDPSCGSGAFLVQCYRALVEKRLAKNGSILPTELSELLVRHIFGVD 386

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-------STLSKDLFT----------G 289
            + +   V    +L+  L+     DL  N +         +    D F            
Sbjct: 387 RDGDACRVAEMSLLLTLLDYTDPPDLENNPRFKLPVLRGSNIFEADFFDPSSKWVARSNN 446

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             FH+ + NPP+ +   K+++  +      E          +    +        K    
Sbjct: 447 LSFHWLVGNPPWREFNSKNQEDRDVR----EWATQHADSCPVGGNQIAE--AFVWKSLPL 500

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            N    A IVL +  LF   + +   +  R
Sbjct: 501 LNESAVAGIVLPAMTLFKFESANFRKQFFR 530


>gi|22537429|ref|NP_688280.1| SNF2 family protein [Streptococcus agalactiae 2603V/R]
 gi|22534305|gb|AAN00153.1|AE014250_16 SNF2 family protein [Streptococcus agalactiae 2603V/R]
          Length = 2274

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIADN------- 784

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R             +   +   K     + GG+ AI+ S+  +           
Sbjct: 785 ---RYDRP-----------YMIHDYFVKKSLDLLHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T++ T +      
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 865


>gi|76797967|ref|ZP_00780227.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
 gi|76586691|gb|EAO63189.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
          Length = 2271

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F      H+ +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIADN------- 784

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R             +   +   K     + GG+ AI+ S+  +           
Sbjct: 785 ---RYDRP-----------YMIHDYFVKKSLDLLHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T++ T +      
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 865


>gi|262065948|ref|ZP_06025560.1| type II restriction enzyme, methylase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380354|gb|EFE87872.1| type II restriction enzyme, methylase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 1011

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 76/552 (13%), Positives = 160/552 (28%), Gaps = 120/552 (21%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           S ++  +   + +   N + N+  +      N             +  L     +++  K
Sbjct: 289 SIFDIFKVFCNWINLGNPKENIAHFNGGLFKN----------DDVLNSLNIDDKVFEELK 338

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGS--------------EVSEGAEDFMTPRDVV 184
             S  +   D   + ++ +I+E  I                      +    F TP+ + 
Sbjct: 339 KISDYDFDSDLNVN-ILGHIFEQSISDIEELKKSISGEEFDQKKSKRKKDGIFYTPQYIT 397

Query: 185 HLATAL--------------------------LLDPDDALFKESPGMIRTLY-------- 210
                                           + D     + ++       +        
Sbjct: 398 KYIVENSIKNWLDDKRKELGEDDLPKLNEKDYIFDIAKKNYTKNYRKHIEFWQQYREAVR 457

Query: 211 -----DPTCGTGGFLTDAMNHVADCGSH----------------HKIPPILV--PHGQEL 247
                DP CG+G FL  A   + +   +                 +   IL     G +L
Sbjct: 458 NIKVIDPACGSGAFLITAFEFLLNYNKYLDDKIFDLVGTSDLFSDRTKEILQNNIFGVDL 517

Query: 248 EPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKD-----------------LFTG 289
             E+  +    + ++  + +     L  NI+ G++L  D                 +F  
Sbjct: 518 NKESVEITKLSLWLKTADKNKTLASLENNIKCGNSLIDDPEIAGDLAFNWEKEFPEVFAN 577

Query: 290 KRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             F   + NPP+   +     + + K + N E          +S   +        K  +
Sbjct: 578 GGFDIVVGNPPYVLCQPSNTNEKILKFYNNFE----------VSSYKIDLYHLFFEKGII 627

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G  + +  ++ L N        ++R ++L N  I+ I+     +F   N+     
Sbjct: 628 LSKNNGYISFITPNTYLVNKYN----LKLREFILRNTQIKEIINYKNIVFEDANVDVSTI 683

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           IL   K  +   K+ L  ++     I  E ++   + DD   +I ++        FS  +
Sbjct: 684 ILKKSKYTDENVKILL--SSKNENKIVLEKQQNDWLKDD--EKIFNLRKEFPIN-FSNCI 738

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             +        +    + S I  K    +    I    +     S +      +   I  
Sbjct: 739 SLKEIAKTYFGIQAFDKKSSISQKKENEKYLPMIDGANVFRYQFSKYNQYFNFIDDNIKS 798

Query: 529 YGWAESFVKESI 540
            G  + + KE I
Sbjct: 799 GGDYKVYEKERI 810


>gi|18311571|ref|NP_563505.1| site specific DNA-methyltransferase [Clostridium perfringens str.
           13]
 gi|18146255|dbj|BAB82295.1| probable site specific DNA-methyltransferase [Clostridium
           perfringens str. 13]
          Length = 494

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 74/250 (29%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG                
Sbjct: 23  REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++   +  K        S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYICEFKKGNFINYYCSQKNTKTWG 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + +++  +  +      GL  +            + +     
Sbjct: 109 YDYYIANPPYNC---HEVNFIKENKERLKNYFNEVGLHNM-------YSMFMSAIIDKAK 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSFF----TAKNHKRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  + +
Sbjct: 215 LRKGKEYQEK 224


>gi|227500575|ref|ZP_03930624.1| possible helicase [Anaerococcus tetradius ATCC 35098]
 gi|227217316|gb|EEI82653.1| possible helicase [Anaerococcus tetradius ATCC 35098]
          Length = 1511

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/404 (14%), Positives = 119/404 (29%), Gaps = 82/404 (20%)

Query: 31  FGKVILPFTLLRRL--------ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
           + +  LPF+ L+ +           L   R    +K L       +    ++    +   
Sbjct: 447 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNELIRTDRENIEG 506

Query: 83  TSEYSLSTLGSTNTRNNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
            SE SL      N   NL        +  A  + +  +  +  AR ++  +L K      
Sbjct: 507 ISEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 566

Query: 142 GIELHPDTVPDRVM---SNIYEHL-IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             ++  +    + +   + + E+L    +          F TP+ V+             
Sbjct: 567 LSDVFDEEKEGQWLEARNFLKENLTGEEYNRARGSTLTAFYTPKVVIDAIYE-------- 618

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV- 256
                      + +P+ GTG F+ +    + +             +G EL+  +  +   
Sbjct: 619 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAKE 668

Query: 257 ----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
               A + I+  E                  +  F+   F   + N PFG+         
Sbjct: 669 LYPNANIQIKGFE------------------ETNFSNNLFDVAIGNIPFGE--------- 701

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                      F     +    + L   +   K       GG  A + SS  +       
Sbjct: 702 -----------FKVADREYERNNFLIHDYFFAKTLDKVRDGGIIAFITSSGTMDKKS--- 747

Query: 373 GESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
              ++RR++ E       + LP   F     T + + +  L  R
Sbjct: 748 --EDVRRYISERAEFLGAIRLPNRTFKGVAGTEVTSDIIFLKKR 789


>gi|225352840|ref|ZP_03743863.1| hypothetical protein BIFPSEUDO_04473 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156329|gb|EEG69898.1| hypothetical protein BIFPSEUDO_04473 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 286

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSR 466
            +L  ++ ++R   V +++A+  +        K   +     ++I+D+   +R   KFSR
Sbjct: 1   MVLRKKRDDDR---VLIVDASKHFIK----DGKNNKLQASDIKRIVDVVSNNRTVPKFSR 53

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKT 493
           ++           +  P  +    D  
Sbjct: 54  LVSIDEIRANDYNLNIPRYVDSSEDAE 80


>gi|313623593|gb|EFR93765.1| adenine-specific methyltransferase [Listeria innocua FSL J1-023]
          Length = 220

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 71/224 (31%), Gaps = 34/224 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP CGT   LT  MN +       K    +   G +++    ++ + G  ++R +  
Sbjct: 5   SILDPACGTANLLTTVMNQL-----ELKGDVEVHASGVDVDDLLISLALVGADLQRQKMT 59

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                                       +S+ P G          ++  K  EL R    
Sbjct: 60  LLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFELCR---- 99

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S    LF+       +     GG    ++  +          +  I++    N  I
Sbjct: 100 EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK----NGHI 151

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
           E I+ LP  LF        + IL     + +  K V L N + L
Sbjct: 152 EGIIKLPETLFKSEQARKSILILRKADVDVKPPKEVLLANLSSL 195


>gi|254884184|ref|ZP_05256894.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|255013702|ref|ZP_05285828.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|254836977|gb|EET17286.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1659

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +   + G    +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTTGFEEIG----EQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|225619645|ref|YP_002720902.1| Modification methylase [Brachyspira hyodysenteriae WA1]
 gi|225214464|gb|ACN83198.1| Modification methylase [Brachyspira hyodysenteriae WA1]
          Length = 406

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 49/280 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++    E  +    + TP+ +  L    L+   +            + DP CG+G FL  
Sbjct: 13  LKNTDIEKRKKLGQYFTPKSIRDLLLKELVYISEKKDNV------KILDPACGSGEFLLS 66

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +            I   +G +++    ++              +   + +I+   +L
Sbjct: 67  CNEYFK----------IPKLYGFDIDESLVSISK------------KLIKNADIKCLDSL 104

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D     ++ Y + NPP+ +   K    ++K+H +   GR            +      
Sbjct: 105 KLDTKKSIKYDYVIGNPPYFE--FKPDKELKKKHNDIISGR------------VNIFSIF 150

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA--IVALPTDLFFR 400
                     GG  A V+  S       G+  S++R +++    +E   IV   +D F+ 
Sbjct: 151 IKLGLELLEDGGYLAYVVPPSM----NNGAFFSKLREYIMNISSVEYLHIVD-GSDNFYM 205

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            N    L IL    + + +  +   N   ++T  +    K
Sbjct: 206 ANQKVMLLILKKTNSHKNKKYIFSKNDITIFTEDKAFLNK 245


>gi|224026703|ref|ZP_03645069.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
           18228]
 gi|224019939|gb|EEF77937.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
           18228]
          Length = 1659

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|319788873|ref|YP_004090188.1| N-6 DNA methylase [Ruminococcus albus 7]
 gi|315450740|gb|ADU24302.1| N-6 DNA methylase [Ruminococcus albus 7]
          Length = 2936

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 71/242 (29%), Gaps = 58/242 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP +V         D      ++       + +P+ G G F     + + D       
Sbjct: 1407 FYTPPEV--------TDGVFQALRQLGFEGGNILEPSMGVGNFFAKMPDDIRDSSK---- 1454

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +         L  + R  ++   +         F    F   +
Sbjct: 1455 -----LYGVELDSISGRIAQL------LNPEDRIQITGFEKT-------RFNNNSFDVVI 1496

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG     DK              +     KI D       + A K       GG  
Sbjct: 1497 GNVPFGDYRVSDKA-------------YDKLGLKIHD-------YFAVKSIDKVKPGGVV 1536

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            AIV S   +          + RR L E   +   V LP + F     T   T +     R
Sbjct: 1537 AIVTSKFTM-----DKINDKARRHLAERCDLLGAVRLPNNAFKKNAGTETTTDILFFQKR 1591

Query: 414  KT 415
            +T
Sbjct: 1592 ET 1593


>gi|284802098|ref|YP_003413963.1| N-6 DNA methylase [Listeria monocytogenes 08-5578]
 gi|284995240|ref|YP_003417008.1| N-6 DNA methylase [Listeria monocytogenes 08-5923]
 gi|284057660|gb|ADB68601.1| N-6 DNA methylase [Listeria monocytogenes 08-5578]
 gi|284060707|gb|ADB71646.1| N-6 DNA methylase [Listeria monocytogenes 08-5923]
          Length = 636

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 143/443 (32%), Gaps = 65/443 (14%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL---ESYIASFSDNAKAIF- 115
           LA   +    E+F K        +SE  +  L        +    +++          F 
Sbjct: 12  LAKDINAKIPEAFEKQYYRKMSYSSENKIIELDKELLHETISFEVAFVHVIMFIFNRCFN 71

Query: 116 -EDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYE------HLIRRF 166
            E+ ++S  + RL+  GL   Y + +NF+      +++  +  S+IYE        I + 
Sbjct: 72  TENTNYSILLERLDVDGLFSWYSMAENFATDNF--ESINVQEFSDIYELVNQHDTFIDK- 128

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              + +    F TP ++V          +      S      L DP CGTG FL + +  
Sbjct: 129 --NIKKKLGQFYTPTNIVQRMI-----FEIKTNLRSLTNTDLLIDPACGTGVFLIEIIKE 181

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +       ++   +                  M    +          NI          
Sbjct: 182 LKKIFQQSEVIEYV---------------KNNMFAYDVNPFAVIATKINIAYILLKEFPE 226

Query: 287 FTGKRFHYCL--SNPPFGKKWEKDKDAVEKE------------HKNGELGRFGPGLPKIS 332
              K   Y +  +N     +W+      +                N EL +   G  +I 
Sbjct: 227 EKEKILDYIVNDNNAFCNIRWKNTVVEPDNNIYTIILGNPPYFKLNKELIKNISGYDEIL 286

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G                   G  + ++  S     R+G     +R  + ++  I A++ 
Sbjct: 287 YGQPNIYSFFMYWGMKHLKKDGAMSFIVPQSI----RSGLYFKNLRSKM-KDLRIRALIH 341

Query: 393 LPT--DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + +  ++F R   A  +  L N+     + K+Q  +  +   +   +  + +++ D++  
Sbjct: 342 IDSRQNVFDRAEQAVLIICLENKPVANSKTKIQFYDG-NGTINSEFKVSRSKLMMDERNN 400

Query: 451 QILDIYVSRENGKFS---RMLDY 470
            I    +S++   +S   ++   
Sbjct: 401 HI--FVISKKIEMYSILDKIFTN 421


>gi|295100255|emb|CBK97800.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 297

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 9/133 (6%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
           L +   S S +     E      TI     A     + +  + + +  +  PD   + ++
Sbjct: 41  LTAIEISNSTDKVNAPERTKMYQTIVSKYSAKEREGMAEMLAEVIMGMEQNPDQDFLGSL 100

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y           ++ A  F TP DV      +  DP             ++ DP CG G 
Sbjct: 101 Y-----MMCELGNDHAGQFFTPYDVCRCMAEITFDPK---LHPDMEGFISVSDPACGAGA 152

Query: 219 FLTDAMNHVADCG 231
            L   +N      
Sbjct: 153 TLLAFLNVCKRRN 165


>gi|53714149|ref|YP_100141.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|52217014|dbj|BAD49607.1| putative DNA methylase [Bacteroides fragilis YCH46]
          Length = 1659

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|294644265|ref|ZP_06722033.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292640336|gb|EFF58586.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 875

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|293369550|ref|ZP_06616128.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635254|gb|EFF53768.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1659

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|282921316|ref|ZP_06329034.1| II DNA/RNA helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282315731|gb|EFB46115.1| II DNA/RNA helicase [Staphylococcus aureus subsp. aureus C427]
          Length = 1311

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 71/606 (11%), Positives = 176/606 (29%), Gaps = 93/606 (15%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
            R LE   +      +           D E+ +K     F  + + +L+   +      + 
Sbjct: 711  RYLEDWSKDVNEIAQRYIRWITDRINDKENPIKNEFSKFVYSLQINLNKSITIELAIEML 770

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-------------FSGIELHPD 148
            +         +A+F+   F +     +    + K  +              +  ++L   
Sbjct: 771  AQHLITKPVFEALFDQNSFVNNNPVSQSMEKVVKELQKAGFEKEQDRLKPFYESVKLRAS 830

Query: 149  TVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKES 202
             + +     ++++ +YE          S+      TP +VV      + +   +   K  
Sbjct: 831  GIDNAESKQKLITTLYEKFFSTGFKTTSKRLGIIFTPVEVVDFIIKSVDEILQNHFEKSL 890

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVC 255
                  + DP  GTG F+   ++++      +KI             H  E+   ++ + 
Sbjct: 891  SSKGVHILDPFTGTGTFVARVLSYLKSQMEQNKISMADIVHKYTKELHANEIILLSYYIA 950

Query: 256  VAGM------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--------------- 294
               +      +   LE  P   +       ST + + F    F                 
Sbjct: 951  AINIETTFNEIDTNLEYQPFEGIVLTDTFESTENDNTFDDIFFGINNKRLKQQKKLPITA 1010

Query: 295  CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH--LANKLELPPN- 351
             + NPP+ K      D    ++     G+      + +  ++   +       L    + 
Sbjct: 1011 IIGNPPYKKIKATANDFTAVQNYPMLDGKINETYARETSANLKNSLQDSYIRALRWSTDR 1070

Query: 352  --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---------------P 394
                G    + ++  + +         +R+ L ++     ++ L                
Sbjct: 1071 IGDTGIIGFITNNGYIDSASLNG----VRKVLEKDFNYIYVINLKGSLSGLSSEAIKREG 1126

Query: 395  TDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQI 452
             ++F  +T +A  + IL    +     K   I   +L    + +      I D D    I
Sbjct: 1127 KNIFDIKTGVA--IIILVKDGSNAHSIKYYDI-GNNLSKQEKLDILSNNSIKDLDFIDII 1183

Query: 453  LD---IYVSRENGKFSR----------MLDYRTFGYRRIKVLRPLRMSFILDKTGLARL- 498
             D    +++  +  + +          +   +  G+   +       S    +  + R+ 
Sbjct: 1184 PDENGDWINHRDKNYGKYLALGGEKDAVFQNKLVGFNTNRDFWSFNFSKKEVEKNIERMI 1243

Query: 499  ---EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                 +I         +    ++        +  G  + F+K    + +   + +  +K 
Sbjct: 1244 SNYNTEIEKSNDYDTQEEKLKNLNSNESYIKWSQGLKDKFIKSEKLNFKPNKIILTQAKP 1303

Query: 556  FIVAFI 561
            F     
Sbjct: 1304 FTKKIC 1309


>gi|300778009|ref|ZP_07087867.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300503519|gb|EFK34659.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1811

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 51/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V++  ++          ++S   I    +P+ G G F+           ++ K 
Sbjct: 105 FYTPPEVINAISS--------TLRDSGVNIDKFLEPSAGIGSFVQSFAESETKVTAYEKD 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
               +  G+ L+   H    + + +   E  P ++ +                  +    
Sbjct: 157 ----ILTGKILK---HLYPESNIRVSGFEEIPEKEQN-----------------TYDVIA 192

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +  +   +          I +   L    +          GG  
Sbjct: 193 SNIPFG-----DTSVFDLSYSRSKDPAKIQAARSIHNYFFLKGNDMLR-------EGGLQ 240

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IRR L+EN+ + + + LP +LF     T + + L IL   
Sbjct: 241 AFITSQGIL----NSPNNEPIRRALMENNNLVSAIRLPNNLFSDYAGTEVGSDLIILQKN 296

Query: 414 KTEE 417
             ++
Sbjct: 297 TAKQ 300


>gi|298483930|ref|ZP_07002101.1| DNA methylase [Bacteroides sp. D22]
 gi|298269990|gb|EFI11580.1| DNA methylase [Bacteroides sp. D22]
          Length = 1345

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|302670608|ref|YP_003830568.1| adenine-specific DNA methylase [Butyrivibrio proteoclasticus B316]
 gi|302395081|gb|ADL33986.1| adenine-specific DNA methylase [Butyrivibrio proteoclasticus B316]
          Length = 663

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 88/260 (33%), Gaps = 39/260 (15%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +  +  +Y   +   G +  +    + TP          L++   +    +    ++  
Sbjct: 176 SEDTLGMLY---LSLRGLQAKKSTGAYYTP----FFVVDELINEAFSSKATTDYASKSYI 228

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDP 268
           DP CGTG FL    +++          P+   HG +++     +C   + I         
Sbjct: 229 DPACGTGNFLLRLPDNI----------PLANIHGADIDKTAVILCRINIAIKYHITSWSE 278

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              L+ NI     L         ++  L NPP+G  + KD  A+ +   +   G   P  
Sbjct: 279 LEVLTNNIVCRDFLFSPA--NGYYNVTLGNPPWGYAFSKDSTALIRHTFSSFSGTGKPES 336

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                      + +   L+           +L  + L +         IR+++ +N  + 
Sbjct: 337 FS---------LFIEKSLKESDE----VTFLLPETILGS----DYHLGIRKFITDNANVV 379

Query: 389 AIVALPTDLFFRTNIATYLW 408
           +I  L  ++F +    + + 
Sbjct: 380 SISYL-GEVFDKVQCPSVIM 398


>gi|294806707|ref|ZP_06765537.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294446084|gb|EFG14721.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 920

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|108763664|ref|YP_630054.1| putative restriction/modification enzyme [Myxococcus xanthus DK 1622]
 gi|108467544|gb|ABF92729.1| putative restriction/modification enzyme [Myxococcus xanthus DK 1622]
          Length = 1656

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 87/312 (27%), Gaps = 40/312 (12%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCG 215
             +Y+   R    ++SE      TP ++V      +     A F ++       + DP  G
Sbjct: 869  ELYDKFFRNAFPKMSERLGIVYTPVEIVDFILKSVDHLLRAEFGQTLGSEGVHVIDPFTG 928

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL--------E 265
            TG F+T  +                  H  E+    + +    +      L        E
Sbjct: 929  TGTFITRLLQSGLIAEEDLPRKYAKEIHANEIALLAYYIAAINIEAAYHGLVGGMYVPFE 988

Query: 266  SDPRRDLSKNIQQGSTLSKDLFTG-------KRFH--YCLSNPPFGKKWEKDKDAVEKEH 316
                 D  +  ++   +S+ L          K+      + NPP+ +  E + D      
Sbjct: 989  GICLTDTFQLYEKDDLISRVLVDNSARRRRQKKLDIRVVVGNPPYSEGQESENDNNANLA 1048

Query: 317  KNGELGRFGPGLPKISDGSML---FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                  R        SD  +    +  ++          G R  +   +   F     + 
Sbjct: 1049 YPLLDARIAATYVARSDAKLAKNNYNSYIRAIRWASDRVGNRGIVGFVTGAGFVESNTT- 1107

Query: 374  ESEIRRWLLENDLIEAIVAL--------------PTDLF-FRTNIATYLWILSNRKTEER 418
               +RR L E      I  L                ++F   +     +  L      + 
Sbjct: 1108 -DGLRRSLKEEFSSIYIFHLRGNARSSGERRRMEGGNVFDMGSRAPVAISFLVKNPDAKE 1166

Query: 419  RGKVQLINATDL 430
             G +Q  +  D 
Sbjct: 1167 HGSIQFYDVGDY 1178


>gi|126640696|ref|YP_001083680.1| hypothetical protein A1S_0629 [Acinetobacter baumannii ATCC 17978]
          Length = 1459

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 122/368 (33%), Gaps = 61/368 (16%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG-- 142
           E  L  + + N      SY+       K  F        +     +        NF+   
Sbjct: 155 ELFLKKILNDNHD---RSYLNEIKPTIKQFF-----YEQLECCFNSLSNQFNVHNFNSFE 206

Query: 143 --IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             IE+H       ++  I E  +++F            TP  +  +   LL +P      
Sbjct: 207 KIIEIHNKQPVKPIIG-ISELQLQQFS-----------TPITISAICQKLLFNP------ 248

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           E+    +TL +PT G G  +           +H    P L   G E++          + 
Sbjct: 249 ETLDTGKTLLEPTIGNGSLV-----------AHFIKKPQLKIVGVEIDSNRVKNTQLFLD 297

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                S+ R       +      K L   + F + ++NPPFG    K        ++ G 
Sbjct: 298 ANIEHSNLRVIEGDYSK---IKLKQLNNNELFDFTIANPPFG----KIDKTTLTLNQAGS 350

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L R      +      L    L   L L  + G    I+ S S    G    G   +  +
Sbjct: 351 LERLNFSTQR------LDHKILLETLSLRKDKGRSVFIIGSDSFYEAGVVKGGSKNLLNY 404

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWI------LSNRKTEERRGKVQLI-NATDLWTS 433
           L +N  +EA V L   L+ +      + +      L N +T E   ++ +I N  DLW  
Sbjct: 405 LYDNYNVEAAVELDGSLYKKQGTRVNVRVLVIGDLLENNRTYEVPHELPIINNVQDLWRW 464

Query: 434 IRNEGKKR 441
             N  +KR
Sbjct: 465 SENVLQKR 472


>gi|331004614|ref|ZP_08328079.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330410483|gb|EGG89913.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2541

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 68/288 (23%)

Query: 156  SNIYEHL-IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              + E+L +  + +        F TP+ V+      L D               + +P+ 
Sbjct: 1671 GFLKENLSLSEYEAAKESTLTAFYTPKVVIDAIYHTLSDMGFESGN--------ILEPSM 1722

Query: 215  GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
            GTG F+          G+          +G EL+  +  +               +    
Sbjct: 1723 GTGRFI----------GNLPGSMQNSKFYGIELDSISGQIAK-------------KLYPH 1759

Query: 275  NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            +  Q     +  F+   F   + N PFG     D    ++E++                 
Sbjct: 1760 SNIQVKGFEETAFSNNLFDIAIGNVPFG-----DYRVSDREYE---------------KN 1799

Query: 335  SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + L   +   K        G  A + SS  +          +IRR++ E       + LP
Sbjct: 1800 NFLIHDYFFAKTLDKVRSKGIIAFITSSGTMDKRN-----EDIRRYISERAEFLGAIRLP 1854

Query: 395  TDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
             + F     T + + +  L        R ++  I+  + W  +  + K
Sbjct: 1855 NNTFKGEAGTEVTSDIIFLKK------RDRLLKID--EDWVKLDKDRK 1894


>gi|260438308|ref|ZP_05792124.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292809330|gb|EFF68535.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 2481

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 67/234 (28%), Gaps = 61/234 (26%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            +    ++   +       + +P+ G G F           GS          +G EL+  
Sbjct: 954  IAMCINSALVQFGFKGGNVLEPSMGIGNFF----------GSMPAPMQQSKLYGVELDSI 1003

Query: 251  THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 1004 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVMGNVPF---- 1041

Query: 306  EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                         G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 1042 -------------GDYKIFDP---KYNKYNFRIHDYFLAKALDQARPGGMVAVITTKGTL 1085

Query: 366  FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                       IR++L E   +   + LP   F     T +   +  L  R+ +
Sbjct: 1086 DKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGTEVTADILFLQKRERK 1134


>gi|317475388|ref|ZP_07934652.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908416|gb|EFV30106.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1937

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 77/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H          
Sbjct: 105 FYTPKEITDTIADVLADYSVRPT--------RMLEPSAGVGVFVDSVLRH---------- 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++R L  D +       +       +      F   +
Sbjct: 147 SPGADVMAFEKDLLT------GTILRHLYPDKKTRTCGFEK------IERPFNNYFDLAM 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      K+G  GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----EKSGSFGRR--------SAQKAIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  +
Sbjct: 243 AFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKK 297

Query: 414 KTEE 417
             ++
Sbjct: 298 LNKK 301


>gi|292557960|gb|ADE30961.1| putative helicase [Streptococcus suis GZ1]
          Length = 2554

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/484 (13%), Positives = 132/484 (27%), Gaps = 100/484 (20%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S        F TP +V      +L        ++       L +P+CG G F+   
Sbjct: 1041 EEYASARESTLTAFYTPPEVSTAIYKVL--------EQMGFQEGNLLEPSCGIGNFI--- 1089

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G   K       +G EL+  +  +              ++   K+        
Sbjct: 1090 -------GMLPKSMENAKVYGVELDTISAGIA-------------QQLYQKSSIAAQGFE 1129

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG                     F     +    + L   +  
Sbjct: 1130 EVNVPDSFFDGVIGNVPFGD--------------------FKVSDKRYDKYNFLIHDYFF 1169

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A+V S   +    +      +R+++ +   +   + LP D F     
Sbjct: 1170 AKSLDKLRPGGVMALVTSKGTMDKENSN-----VRKYIAQRAELLGAIRLPNDTFKGNAG 1224

Query: 401  TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--DQRRQIL----- 453
            T + + +  L  R         +LI+    W  +  +    R+ +        IL     
Sbjct: 1225 TEVVSDILFLQKRD--------RLIDIEPDWVHLDTDENGIRMNSYFVQHPEMILGEMKM 1276

Query: 454  --------DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
                        + EN   S +L          ++        + ++      +  +   
Sbjct: 1277 VSGRFGPEATCEAFENADLSELL-NEAVSNIHGEISEYEVADELEEEDNSIPADPTVRNF 1335

Query: 506  KLSPLHQSFWLDILKPMMQQIYPYGWAESF-----------VKESIKSNEAKTLKVKASK 554
              + L    +      M                            +++ +    ++K ++
Sbjct: 1336 SYTVLDDKIYFRENSRMSPVEVSATAENRIKGMIGIRDCVRNLIELQTEDYPDSEIKQAQ 1395

Query: 555  SFIVAFINAFGRK----DPRADPVTDVNGEWIPDTNLTE--YENVPYLESIQDYFVREVS 608
              +    ++F +K    + RA+     +       +  E   E+         +F R + 
Sbjct: 1396 KKLNTLYDSFTKKYGLINSRANTSAFSDDSSYALLSALEVINEDGELERKADMFFKRTIK 1455

Query: 609  PHVP 612
            PH P
Sbjct: 1456 PHKP 1459


>gi|332686987|ref|YP_004456761.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
 gi|332370996|dbj|BAK21952.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
          Length = 123

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIK 479
            +  ++A+  +  ++N    +  +  +   +I+D  V+R E  K+S +            
Sbjct: 4   DILFVDASKDFEKLKN----QNQLRPEDVEKIVDTVVNRKEIDKYSHIAILDEIKENDYN 59

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +  P  +    ++  +  +E      KL+   ++   + L  + +
Sbjct: 60  LNIPRYVDTFEEEEPIDLIELSEEMTKLNNEIKTTETNFLSLLDE 104


>gi|257880287|ref|ZP_05659940.1| adenine-specific methyltransferase [Enterococcus faecium 1,230,933]
 gi|257882141|ref|ZP_05661794.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,502]
 gi|257885332|ref|ZP_05664985.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,501]
 gi|257890944|ref|ZP_05670597.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,410]
 gi|257894200|ref|ZP_05673853.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,408]
 gi|257814515|gb|EEV43273.1| adenine-specific methyltransferase [Enterococcus faecium 1,230,933]
 gi|257817799|gb|EEV45127.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,502]
 gi|257821188|gb|EEV48318.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,501]
 gi|257827304|gb|EEV53930.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,410]
 gi|257830579|gb|EEV57186.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,408]
          Length = 339

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 131/384 (34%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E    +  + +    
Sbjct: 14  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKK 73

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+    R +S +   L+ +        A   +TP  +  L   L+          +
Sbjct: 74  LSFEPEEW--RRLSQL---LLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 123

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 124 KKAPVKILDIAAGMGNLLLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----- 172

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q               + +S+ P G  +  + +  ++   + E G
Sbjct: 173 --TSDLTQANVQYFHQDGLQE---LLIDPVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 225

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 226 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 269

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 270 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAQQVKEVLLV---------------- 313

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 314 KLASLKEPEKVTEFFNEFKNWKSS 337


>gi|212638328|ref|YP_002314848.1| adenine-specific DNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559808|gb|ACJ32863.1| Adenine-specific DNA methylase [Anoxybacillus flavithermus WK1]
          Length = 324

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 36/262 (13%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           EH+ +     + +G ++++ P   +      +                +L DP  GTG  
Sbjct: 67  EHIRKALQLAMLKGMKEYVQPHHQMTPDAVAVFIGYLVDEFTKTYFSLSLLDPAIGTGNL 126

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           +T  +N + +          +  +G + +     +           ++ ++   +   Q 
Sbjct: 127 MTAVLNQLTN--------KKVKSYGADADDLLLKLAYVN-------ANLQQHDIQLFHQD 171

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           S   K LF  ++    + + P G            + +N +  R    L   S  S    
Sbjct: 172 SL--KPLFI-EQVDVVVCDLPIG---------YYPDDENAKSFR----LHATSGHSYAHY 215

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           + +   +      GG   +V+ ++   +  +    + I+    E   I+ ++ LP  +F 
Sbjct: 216 LFIEQSIRYTKE-GGYVFLVIPNTLFTSDESKQLHALIK----EETFIQGLLQLPLSMFK 270

Query: 400 RTNIATYLWILSNRKTEERRGK 421
               A  ++IL  +    +  K
Sbjct: 271 NEKAAKSIFILQKKGAHAKPPK 292


>gi|193076416|gb|ABO11078.2| hypothetical protein A1S_0629 [Acinetobacter baumannii ATCC 17978]
          Length = 1516

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 122/368 (33%), Gaps = 61/368 (16%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG-- 142
           E  L  + + N      SY+       K  F        +     +        NF+   
Sbjct: 212 ELFLKKILNDNHD---RSYLNEIKPTIKQFF-----YEQLECCFNSLSNQFNVHNFNSFE 263

Query: 143 --IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             IE+H       ++  I E  +++F            TP  +  +   LL +P      
Sbjct: 264 KIIEIHNKQPVKPIIG-ISELQLQQFS-----------TPITISAICQKLLFNP------ 305

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           E+    +TL +PT G G  +           +H    P L   G E++          + 
Sbjct: 306 ETLDTGKTLLEPTIGNGSLV-----------AHFIKKPQLKIVGVEIDSNRVKNTQLFLD 354

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                S+ R       +      K L   + F + ++NPPFG    K        ++ G 
Sbjct: 355 ANIEHSNLRVIEGDYSK---IKLKQLNNNELFDFTIANPPFG----KIDKTTLTLNQAGS 407

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L R      +      L    L   L L  + G    I+ S S    G    G   +  +
Sbjct: 408 LERLNFSTQR------LDHKILLETLSLRKDKGRSVFIIGSDSFYEAGVVKGGSKNLLNY 461

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWI------LSNRKTEERRGKVQLI-NATDLWTS 433
           L +N  +EA V L   L+ +      + +      L N +T E   ++ +I N  DLW  
Sbjct: 462 LYDNYNVEAAVELDGSLYKKQGTRVNVRVLVIGDLLENNRTYEVPHELPIINNVQDLWRW 521

Query: 434 IRNEGKKR 441
             N  +KR
Sbjct: 522 SENVLQKR 529


>gi|126667783|ref|ZP_01738750.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17]
 gi|126627731|gb|EAZ98361.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17]
          Length = 2567

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 51/227 (22%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            ++ P           +  + +P+ GT  F +     +    +H            EL+P 
Sbjct: 895  IIQPMWEALDRFNIPLNRVLEPSAGTLQFKSFMPKELESKVTHTTAV--------ELDPI 946

Query: 251  THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDK 309
            T  +         +  D     S   +   T   D F    F   +SN PFG  K    +
Sbjct: 947  TARIAAM------IHPDATVISSGFEK---TTFPDGF----FDCVISNVPFGDYKIFDPQ 993

Query: 310  DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              + KE  +     F  GL K+                     GG  + + SS  L    
Sbjct: 994  HPLRKESIHNAF--FLKGLDKV-------------------RPGGVVSFLTSSYVL---- 1028

Query: 370  AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
              S ++++R+ +++   +   V LPT  F     T++ T +  L  +
Sbjct: 1029 -DSKDTDVRKEIMDRAHVVGAVRLPTGTFDKTTGTSVVTDILFLQKK 1074


>gi|167626553|ref|YP_001677053.1| hypothetical protein Fphi_0335 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596554|gb|ABZ86552.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 960

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/524 (12%), Positives = 150/524 (28%), Gaps = 113/524 (21%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N++  I    DN   +F   D    +++  ++        +F                  
Sbjct: 260 NIDDRIKHTVDNLADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------ 301

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------- 208
           YE  +  + S++ +    + TP+ VV      + +   + F  S G+  T          
Sbjct: 302 YEDFLSEYDSKLRKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQ 361

Query: 209 ---------------------LYDPTCGTGGFLTDAMNHVADCG---------SHHKIPP 238
                                + DP  GTG FL +A+  + +            + +   
Sbjct: 362 TTDKRAKSGYKQIEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHL 421

Query: 239 ILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNI----------QQGSTLS--- 283
           I   +G EL   ++A+      ML+      P+   S+                T +   
Sbjct: 422 IPRLNGFELLMASYAMAHLKLDMLLTDTGYKPKSTQSQRFHIYLTNSLEEHHPDTGTLFA 481

Query: 284 ----------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                       +         + NPP+        + +    ++ +         +   
Sbjct: 482 NWLSNEANEANQIKKDTPVMVVMGNPPYSGISSNTGEWITSLIEDYKYVDGVHFNERKHW 541

Query: 334 GSMLFLMHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
            +  ++  +   +  +  NG G  A +     L           +R  LL+  D I   +
Sbjct: 542 LNDDYVKFMRYGQYYIEKNGSGILAFINPHGFL----DNPTFRGMRYSLLKTYDKIYT-I 596

Query: 392 ALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLI-NATDLWTSIRNEGKKRRIIND 446
            L  +              S +K       +   V  I     +   ++   KK   + +
Sbjct: 597 DLHGN--------------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAE 642

Query: 447 DQRRQILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
                  D+Y  R +  +F       + G+++++  +P       D +  A  E   +  
Sbjct: 643 VYH---YDLYGKRNDKYEFLSQNSLSSIGFKKVEYSKPYYFFIPKDDSQRASYEKGFSVV 699

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            L P + +  +     ++  I      +              ++
Sbjct: 700 SLFPENVTGIVTARDKVVIDISKQKLLDRINNFCNNKYSDDDIR 743


>gi|307307924|ref|ZP_07587649.1| N-6 DNA methylase [Sinorhizobium meliloti BL225C]
 gi|306901540|gb|EFN32143.1| N-6 DNA methylase [Sinorhizobium meliloti BL225C]
          Length = 534

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 95/282 (33%), Gaps = 39/282 (13%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P    +  +  +Y  L+       ++ A  + TP  +      + +D    + +      
Sbjct: 58  PTHERNYWIGTLY-TLMMSPADRRAQAA--YFTPPYLADAVIDMAVDHGFDVARHD---- 110

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG--MLIRRL 264
             + DP  G   FL+   + +   G   K       +G E++     +      ++  +L
Sbjct: 111 --VLDPAAGGAAFLSLIADRMYRAGLPKKTV-TRRLNGIEIDE---RLARMSEFLIAEQL 164

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E    R++ K      ++  D+     +   ++NPP+G +   D+ + EK  K       
Sbjct: 165 EGFKDREIVKVR---DSIHVDV--DGSYDLVIANPPYG-RMRPDEVSHEKWSK------V 212

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G           L     K       GG  A+V+ SS     R G     +R ++   
Sbjct: 213 AYGNHINKYAIFTELCIRVAK------PGGLVALVIPSSF----RGGPLYDRMRSYIASQ 262

Query: 385 DLIEAI--VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
             I A+  V    D+F        + ++        + +V+ 
Sbjct: 263 GQILALGAVTNRDDVFADVAQDVSVLLMRKGIPHRTKQRVKF 304


>gi|294807413|ref|ZP_06766217.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445373|gb|EFG14036.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 523

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 82/258 (31%), Gaps = 57/258 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV      L  P                DP+ GTG      +  V +       
Sbjct: 26  FYTPEPVVTAMQESLQVPGIRPG--------RFLDPSAGTG-MFISGLKGVPE------- 69

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 H  E +  T  +  A     R+  D  + +                   F    
Sbjct: 70  -----VHCFEKDKLTGKILSALYPESRVAIDGFQSIQPYYNNY------------FDMVS 112

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGG 354
           SN PFG     D+D            R    + K S    L  +H    L+     + GG
Sbjct: 113 SNIPFGNTRVYDRD----------FDRSEDVVRKSS----LAAVHNYFFLKGMDTLHEGG 158

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
             A + +S  + + +       +R WL+ +  + + + LP +LF    T +++ L +L  
Sbjct: 159 ILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTEVSSDLIVLQK 214

Query: 413 --RKTEERRGKVQLINAT 428
             RK+E    +   I   
Sbjct: 215 NTRKSELTEKERNFIETR 232


>gi|167764559|ref|ZP_02436680.1| hypothetical protein BACSTE_02949 [Bacteroides stercoris ATCC
           43183]
 gi|301312135|ref|ZP_07218054.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
 gi|167697228|gb|EDS13807.1| hypothetical protein BACSTE_02949 [Bacteroides stercoris ATCC
           43183]
 gi|300829810|gb|EFK60461.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
          Length = 246

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 20/136 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L  R   +  +    F TP  +  L              +     + + DP
Sbjct: 85  DALGDLFMALSSR---KGQQAQGQFFTPVHICDLMV-------MCTETDGKKTGQRINDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G++           +++      + +  MLI     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLGNY--------LVAEDVNRTCCLMTICNMLIHGCVGEVIHHD 184

Query: 273 SKNIQQGSTLSKDLFT 288
           S   +          T
Sbjct: 185 SLCPENFMDGWMVNHT 200


>gi|291544388|emb|CBL17497.1| DNA methylase [Ruminococcus sp. 18P13]
          Length = 1068

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 72/253 (28%), Gaps = 59/253 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S        F TP  V++    ++        K+       + +P+CG G F+   
Sbjct: 345 EEYASARESTLTAFYTPPTVINAVYKVM--------KQLGFREGNILEPSCGIGHFI--- 393

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  G   +       +G EL+  +  +              ++   K+        
Sbjct: 394 -------GMLPEEMKESKIYGVELDTISAGIA-------------QQLYQKSSIAAQGFE 433

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +       F   + N PFG                     F     +      L   +  
Sbjct: 434 ETNLPDSFFDAVVGNVPFGD--------------------FKVPDKRYDKHKFLIHDYFF 473

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG   ++ S   +         S +R+++ +   +   + LP + F     
Sbjct: 474 AKSLDKLRPGGVMVLITSKGTM-----DKENSAVRKYIAQRADLLGAIRLPNNTFKGNAG 528

Query: 401 TNIATYLWILSNR 413
           T + + + IL  R
Sbjct: 529 TEVVSDILILQKR 541


>gi|261496171|ref|ZP_05992577.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308123|gb|EEY09420.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 506

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 57/270 (21%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +T + L++ I S  D AK  +E     S    L  + L      +   ++L    +   V
Sbjct: 252 DTESELKAKIQSLFDRAKNKWEGVFAESAKINLSPSHLAI-CVSSLEEVKLFNSNL--DV 308

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   +E+LI +           + TPR V+ +   +L           P    T+ D   
Sbjct: 309 VDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------DPKPEETVIDTAA 355

Query: 215 GTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEPETHAVCV 256
           G+ GF   ++ HV                   +                + + +   V  
Sbjct: 356 GSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPEQTDYVKEKVFAIDFDEKAVRVAR 415

Query: 257 -AGML----------IRRLESDPRRDLSKNIQQGSTLSKDLFT------------GKRFH 293
              ++          +  L+ +   D +K  +      +                  +F 
Sbjct: 416 TLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWNDVYGEGWKKLRKLRKTKNENRDFQFD 475

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             ++NPPF    ++ +     E      G+
Sbjct: 476 VLMANPPFAGDIKETRILARYELGKNSKGK 505


>gi|148241073|ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
 gi|146411449|gb|ABQ39902.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
          Length = 1748

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 58/221 (26%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F       + +              G EL+P T  +         
Sbjct: 237 WRGGRVLEPGIGTGLFPALMPEQLRET---------SHVTGVELDPVTARIARL------ 281

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     +L     F   + NPPF  +  +   A            
Sbjct: 282 ------LQPRARIVAGDFARTELPA--TFDLTVGNPPFSDRTVRSDRAYRSMGLRLHD-- 331

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                            +   +       G  AA V SS  +    A +     R  + +
Sbjct: 332 -----------------YFIARAIDLLEPGALAAFVTSSGTMDKADASA-----REHIAK 369

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +  + A + LP   F     T++   +     RK  +  G 
Sbjct: 370 SADLIAAIRLPEGSFRASAGTDVVVDILFFRKRKVGDAEGD 410


>gi|229814944|ref|ZP_04445282.1| hypothetical protein COLINT_01987 [Collinsella intestinalis DSM
           13280]
 gi|229809431|gb|EEP45195.1| hypothetical protein COLINT_01987 [Collinsella intestinalis DSM
           13280]
          Length = 851

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           L+R L  D     ++   + +    +  + + F   ++NPP+              + N 
Sbjct: 433 LMRNLSGDLFVSHTQTNIERAANCCETLS-RTFDVVVANPPYMGSG----------NFNP 481

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            + ++           + ++     +++      G A I  S+S +F   +       RR
Sbjct: 482 FMSKWSKENYSSEKSDLCYM--FIERIKNQRKHLGYAGIAASNSWMFLSSSEQS----RR 535

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
            +LE   I  +V L    F       + +IL+NR    RRG
Sbjct: 536 KVLEECNIITLVQLAQGGFKGIAAQVFAFILANRCDAPRRG 576


>gi|303233580|ref|ZP_07320238.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
 gi|302495324|gb|EFL55072.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
          Length = 3641

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 118/400 (29%), Gaps = 74/400 (18%)

Query: 31   FGKVILPFTLLRRL--------ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
            + +  LPF+ L+ +           L   R    +K L       +  + ++    +   
Sbjct: 1769 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNNLIRTDRENIEG 1828

Query: 83   TSEYSLSTLGSTNTRNNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
             SE SL      N   NL        +  A  + +  +  +  AR ++  +L K    + 
Sbjct: 1829 VSEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYI-GWG 1887

Query: 142  GIELHPDTVPD----RVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDD 196
            G+    D   +       + + E+L     +   E     F TP+ V+            
Sbjct: 1888 GLSDIFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE------- 1940

Query: 197  ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                        + +P+ GTG F+ +    + +             +G EL+  +  +  
Sbjct: 1941 -SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK 1989

Query: 257  AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                              +  Q     +  F+   F   + N PFG+             
Sbjct: 1990 -------------ELYPNSNIQIKGFEETNFSNNLFDVAIGNIPFGE------------- 2023

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                   F     +    + L   +   K       GG  A + SS  +          +
Sbjct: 2024 -------FKVADREYERNNFLIHDYFFAKTLDKVRDGGIIAFITSSGTMDKKS-----ED 2071

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            +RR++ E       + LP   F     T + + +  L  R
Sbjct: 2072 VRRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 2111


>gi|331005595|ref|ZP_08328966.1| hypothetical protein IMCC1989_2177 [gamma proteobacterium IMCC1989]
 gi|330420610|gb|EGG94905.1| hypothetical protein IMCC1989_2177 [gamma proteobacterium IMCC1989]
          Length = 270

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++C+  S + +  +  P  ++  +Y  L        S+    + TP  +  L   +L   
Sbjct: 65  RLCEMLSIVVMLLEPEPTDILGQLYMEL-----ELSSKENGQYFTPPYISGLMAEILHGE 119

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                 + P +  TL++P CG GG +   +  V      H     L     ++      +
Sbjct: 120 SLDQKLQQPFV--TLHEPACGAGGMVMSFVKVVIQ--KKHNPAEKLWVSAIDINRIAALM 175

Query: 255 C 255
            
Sbjct: 176 A 176


>gi|304385203|ref|ZP_07367548.1| adenine-specific methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|304328410|gb|EFL95631.1| adenine-specific methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 343

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 117/366 (31%), Gaps = 54/366 (14%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           ++  GS +D E   K+     Y   + S   L      + L+++I +  +      +  D
Sbjct: 3   ISEEGSQMDTEKIEKI-----YRVFKESTELLQKNLDVDFLDAFIETGDNLITGEIQVED 57

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                A ++K   +Y         + +        +    + ++ +        A    T
Sbjct: 58  GKPDQATVQKLKQVYA--------DFNWQEYETEELRKAIQLVMIQANRVERIQANHQFT 109

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      +L +        S   + +++DP  GTG  L+  +N+  D          
Sbjct: 110 PEAI-----GMLFNYIIENLPLSQDQV-SIFDPAVGTGNLLSTILNYFQDH------QVK 157

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G + +    A+     +   L+ D     S           D    K     +S+ 
Sbjct: 158 FNGTGIDNDDTMLAIASMSFIFEHLKVDLYHQDSI----------DNLLVKNADIVVSDL 207

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P G  +  D+  V  E ++ E   F                 L  +       GG    +
Sbjct: 208 PVG-YYPIDERTVGFETRSSEGHSF-------------VHHLLIEQSMKAVRPGGFGVYL 253

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEER 418
           + S+      A     ++  +  +   ++AI+ LP+ +F        + IL    +  ++
Sbjct: 254 VPSNLFQTEEA----KKLLAFFHDKIYLQAILNLPSKMFKDAKAQKSILILQKVGQNAKQ 309

Query: 419 RGKVQL 424
             +V L
Sbjct: 310 ADQVLL 315


>gi|255009084|ref|ZP_05281210.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146833|ref|ZP_07809026.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135600|gb|EFR52960.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1659

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKDF------ISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|159029754|emb|CAO87832.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 719

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 89/306 (29%), Gaps = 70/306 (22%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT---------------------ALLLDPD 195
           + YE  +  + S++ E    + TP  VV                          L +   
Sbjct: 305 HFYETFLAEYDSKMRESRGVYYTPEPVVSYMVRSVDYILKNKFQIPKGLTDAKKLTIKNP 364

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHGQEL 247
           +   +        + DP  GTG FL   ++H+ D     K                G EL
Sbjct: 365 NDSQETQEVHQVLILDPAVGTGTFLHSVIDHIYDSFRQQKGMWSSYVSKHLLPRLFGFEL 424

Query: 248 EPETHAVCVA--GMLIRRLESDPRRDLSKNIQQGSTLSK-------DLFTGKRFH----- 293
               + V     G+ ++ L  D   D    I   +TL +       D F  +        
Sbjct: 425 LMAPYTVAHMKLGLQLQELGYDFSADERLGIYLTNTLQEAFQIPPADGFLNRIRDEAESA 484

Query: 294 ----------YCLSNPPFGKKWEKDKDAVEKEHKNGEL-------GRFGPGLPKISDGSM 336
                       + NPP+        + +++  K  ++         F      + + + 
Sbjct: 485 QGVKQEHPVMVIIGNPPYSGHSVNTGEWIKELLKGKDIISGEKTASYFEVDEQPLGEKNP 544

Query: 337 LFL------MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            +L          ++  +   G G  A V +   L           +R+ LL+      I
Sbjct: 545 KWLNDDYVKFIRFSQWRIEKTGYGILAFVTNHGYL----DNPTFRGMRQSLLKTFDDIYI 600

Query: 391 VALPTD 396
           + L  +
Sbjct: 601 LDLHGN 606


>gi|240850389|ref|YP_002971783.1| helicase/methyltransferase [Bartonella grahamii as4aup]
 gi|240267512|gb|ACS51100.1| helicase/methyltransferase [Bartonella grahamii as4aup]
          Length = 1654

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 60/443 (13%), Positives = 125/443 (28%), Gaps = 57/443 (12%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++          +     G+   +NN      + S   +
Sbjct: 769  DAFHKELKNNLNSEIKQEEAIEMLAQHLVTRPVFEALFEGNEFVQNN------AISQAME 822

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             I  + D ++     ++    Y   K  +     P    + ++  +YE    +   + ++
Sbjct: 823  RILTELDKTNIEEESKELQEFYNSVKLRASGITSPLARQNLII-TLYESFFAKAFKKTTD 881

Query: 173  GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + D   +   K       ++ DP  GTG F+T  +       
Sbjct: 882  KLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSKLIKP 941

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM------LIR---------RLESDPRRDLSKNI 276
               +       H  E+    + +    +      L++          L    R    KN+
Sbjct: 942  EDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGNYIPFKHIGLADTFRMLEEKNL 1001

Query: 277  QQ----GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             Q     ++   +            NPP+    +   D  +         R        S
Sbjct: 1002 LQKLFKENSEYLEHQKNLNIEVIFGNPPYSVGQKSANDNAKNTPYPILDDRIRETYAAQS 1061

Query: 333  DGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES------------ 375
              S++  ++                 G    V  S  +      S               
Sbjct: 1062 KASLMRNLYDSYIRAIRWASDRIADAGVIGFVSGSGYIEKSTMDSLRKSLAKEFTGIYVL 1121

Query: 376  ----EIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWILSNRKTEERRGKVQLINAT 428
                +IR+ +L N           ++F     T IA  L+I     +     K+   +  
Sbjct: 1122 NLRGDIRKNMLSNGA----AQEGENVFGNGSMTGIAITLFI--KNPSVSEECKIYYHDIG 1175

Query: 429  DLWTSIRNEGKKRRIINDDQRRQ 451
            +  T  +   + +   + D   +
Sbjct: 1176 NNLTREKKLERLQYFGSIDGITR 1198


>gi|262040776|ref|ZP_06014005.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041861|gb|EEW42903.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 263

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y           ++    + +P  +  L   L +       K       TL +P
Sbjct: 111 DFLGALYME-----QELGADEMGQYFSPSSISRLMAGLFMPDAQETIKREGW--MTLDEP 163

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            CG+ G +      +AD G  +     L     +++P    +    + +  +
Sbjct: 164 ACGSAGMVIAFAYWMADAG--YNPSEQLYATCTDIDPMVADMAFIQLSLLGI 213


>gi|331091942|ref|ZP_08340774.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330402841|gb|EGG82408.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 2591

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 73/253 (28%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              +    S     F TP  V+     +L +   +           + +P+CG G F+   
Sbjct: 1041 SEYKEARSSTLNAFYTPPTVIKAMYQILENMGLSTGN--------VLEPSCGVGNFM--- 1089

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G   +    +  +G EL+P +  +               +   KN  +     
Sbjct: 1090 -------GLVPESMQNIQMYGVELDPISGKIA-------------GQLYQKNRIKVKGFE 1129

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K  +    F   + N PFG     D+                    K    S++   +  
Sbjct: 1130 KTEYPESFFDCVIGNVPFGNYQVSDR--------------------KYDKYSLMIHDYFI 1169

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A++       +        ++R    E   +   + LP + F     
Sbjct: 1170 VKSLDLIRPGGVVAVIT-----SSRTMDKESEKVRLQFAEKADLLGAIRLPENAFRKNAG 1224

Query: 401  TNIATYLWILSNR 413
            T++ + +     R
Sbjct: 1225 TDVVSDILFFQKR 1237


>gi|325299628|ref|YP_004259545.1| helicase domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324319181|gb|ADY37072.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1943

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 77/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H          
Sbjct: 105 FYTPKEITDTLADVLADYSVRPT--------RMLEPSAGVGVFVDSVLRH---------- 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++R L  D +       +       +      F   +
Sbjct: 147 SPGADVMAFEKDLLT------GTILRHLYPDKKTRTCGFEK------IERPFNNYFDLAM 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      K+G  GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----EKSGSFGRR--------SAQKAIHNYFFLKGLDAVRNGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|256840942|ref|ZP_05546450.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738214|gb|EEU51540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1943

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 77/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H          
Sbjct: 105 FYTPKEITDTLADVLADYSVRPT--------RMLEPSAGVGVFVDSVLRH---------- 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++R L  D +       +       +      F   +
Sbjct: 147 SPGADVMAFEKDLLT------GTILRHLYPDKKTRTCGFEK------IERPFNNYFDLAM 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      K+G  GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----EKSGSFGRR--------SAQKAIHNYFFLKGLDAVRNGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|154491462|ref|ZP_02031088.1| hypothetical protein PARMER_01071 [Parabacteroides merdae ATCC
           43184]
 gi|160890077|ref|ZP_02071080.1| hypothetical protein BACUNI_02517 [Bacteroides uniformis ATCC 8492]
 gi|154088476|gb|EDN87521.1| hypothetical protein PARMER_01071 [Parabacteroides merdae ATCC
           43184]
 gi|156860465|gb|EDO53896.1| hypothetical protein BACUNI_02517 [Bacteroides uniformis ATCC 8492]
          Length = 246

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 20/136 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L  R   +  +    F TP  +  L              +     + + DP
Sbjct: 85  DALGDLFMALSSR---KGQQAQGQFFTPVHICDLMV-------MCTETDGKKTGQRINDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G++           +++      + +  MLI     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLGNY--------LVAEDVNRTCCLMTICNMLIHGCVGEVIHHD 184

Query: 273 SKNIQQGSTLSKDLFT 288
           S   +          T
Sbjct: 185 SLCTENFMDGWMVNHT 200


>gi|110598200|ref|ZP_01386477.1| hypothetical protein CferDRAFT_0756 [Chlorobium ferrooxidans DSM
           13031]
 gi|110340214|gb|EAT58712.1| hypothetical protein CferDRAFT_0756 [Chlorobium ferrooxidans DSM
           13031]
          Length = 1304

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 100/374 (26%), Gaps = 61/374 (16%)

Query: 26  FKHTDFG----KVILPFTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
            K  DF     ++I     L  +E        T+    ++          +E   K+A  
Sbjct: 274 MKPADFYAEQLQLIYRILFLIVIEERNLVYAETKDEELQRQRKLYYDYYSIERLRKLAAK 333

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIAS------------FSDNAKAIFEDFDFSSTIAR 126
             Y          G   T    E                 FS  A         S+    
Sbjct: 334 LHYIDGRKHDLWQGLKATFRLFEDGFYGERLGIKPLGSGIFSAVALGQLPTLSLSNEALL 393

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE---------------VS 171
                L +   +    + ++   +      ++YE L+                       
Sbjct: 394 KVIRRLTFFENEQKQQVRVNYSDLDVEEFGSVYEGLLEYDAEFREINGITHFTFKEGKGR 453

Query: 172 EGAEDFMTPRDVVHLATA-----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +    TP ++V          ++ +   A   E   +   + D  CG+G  L  A   
Sbjct: 454 SESGAHYTPEELVKPLIKYSLDYVIEERLKAANPEQSLLSIRVCDVACGSGHILLSAARK 513

Query: 227 VA--------------DCGSHHKIPPILV--PHGQELEPETHAVCVAGMLI-RRLESDPR 269
           +A                   H +  ++    +G +  P    +C   + +      +P 
Sbjct: 514 IAIEVARVRTKEEQPSPTAMRHALRDVIRTCIYGVDKNPLAVNLCKVALWLEAHNPGEPL 573

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             L  +I+ G  +       + F   +++  F      DK       K  ++ R      
Sbjct: 574 NFLDHHIKCGDAIVGLAHQEELF-RGIADEAFKALPGDDKLIASALAKRNKIER----KQ 628

Query: 330 KISDGSMLFLMHLA 343
           + ++   L L  + 
Sbjct: 629 REAETGSLGLQLML 642


>gi|225868543|ref|YP_002744491.1| type II restriction enzyme and methylase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701819|emb|CAW99254.1| type II restriction enzyme and methylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 540

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 142/475 (29%), Gaps = 57/475 (12%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +    + TP+ +                         + +P+ G G F+  A    
Sbjct: 5   QDSKKNRGGYYTPQKLTDFIAK----------WAISTPSDKVLEPSAGDGRFVDSAYKVF 54

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +         IL     E   E+ A+ +     + + SD  +             + L 
Sbjct: 55  QNFDVAFNTDQILAI---EYN-ESEALKIDNNKAKVINSDFFKFF----------QEKLQ 100

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F+  L NPPF +    DK+   K   +     F P          L L        
Sbjct: 101 NKETFNVILGNPPFIRYQSIDKEISAKAFDSMIYYGFNPNKMTNLWAPFLLLSAEL---- 156

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +++ +  L    A    +EIR +LL+      +++   +LF        +
Sbjct: 157 --LTADGRLGMIIPAELLQVDYA----AEIRAYLLQKFSELTLISFNDNLFEGAQQEIVV 210

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +    K + +    + I    L      E         D     ++I   +    F  +
Sbjct: 211 LL---GKIKSKNTGFRFIELNSLSDLETLELNNEATFVKD-----IEISKEKWLKYF--L 260

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMM 523
                  ++       L++   + +  +  +     +    +++          ++  + 
Sbjct: 261 TPNEINNFKSAISNSKLKLFDDIAEVNVGVVTGQNNFFVVNKEIIDTFDLENDSLIDIVS 320

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
           +     G   +  +     NE K +K+   K  +      +       +  +        
Sbjct: 321 RAEQINGIELNNSRLKELYNENKKVKLFMPKKVLSNNERKYIDFGESKEYHSGYKTRI-- 378

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD---KEIGRVGYEI 635
                E+  VP   + + +F+R+V  + P   I+K      D   K   R  YEI
Sbjct: 379 ---RKEWYRVPVSWAPEAFFLRQVHEY-PKIVINKTNATNTDTLHKVRARKNYEI 429


>gi|153810239|ref|ZP_01962907.1| hypothetical protein RUMOBE_00620 [Ruminococcus obeum ATCC 29174]
 gi|149833418|gb|EDM88499.1| hypothetical protein RUMOBE_00620 [Ruminococcus obeum ATCC 29174]
          Length = 1247

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 59/258 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +     F T   V+     +L +               + +P+CG G F+   
Sbjct: 1039 EEYSAARASTLNAFYTSPTVIRSMYEVLENMGLKQGN--------ILEPSCGVGNFMGLI 1090

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +               +   KN        
Sbjct: 1091 PESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFE 1127

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  +    F   + N PFG     D+   ++ H                    +   +  
Sbjct: 1128 ETSYPDSFFDCVIGNVPFGAYQVSDR-RYDRHH-------------------FMIHDYFI 1167

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
             K       GG  A+V SS  +           +R+++     +   + LP + F     
Sbjct: 1168 AKSLDLVRPGGVVAVVTSSGTMDKQNP-----AVRQYIANRAELLGAIRLPNNAFQRNAN 1222

Query: 401  TNIATYLWILSNRKTEER 418
            T++ + +     R     
Sbjct: 1223 TSVVSDILFFQKRDRASH 1240


>gi|146320822|ref|YP_001200533.1| SNF2 family protein [Streptococcus suis 98HAH33]
 gi|145691628|gb|ABP92133.1| SNF2 family protein [Streptococcus suis 98HAH33]
          Length = 1456

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 121/423 (28%), Gaps = 86/423 (20%)

Query: 29  TDFGKVIL--PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTS 84
            DF  +I   P   +R  E   +       EK      ++ +L   SF++          
Sbjct: 491 NDFSDIIEQNPVLYMRTWEEVRQALHQLKAEKQTELEEADQELNLFSFLEEEPVQSIGLL 550

Query: 85  EYSLSTLGSTNTR----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           E   S  G  +T     +N            +    DF F   +          K+  N 
Sbjct: 551 EPDGSEKGHNDTELEESDNQIPEEEVVETIPEIPVTDFYFPEDMTDFYPKTARDKVETNI 610

Query: 141 SGIELHPDTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTPR------DVVHLATAL- 190
           + I L  +   +   +++ E  L+ ++        + F    P+      ++  L T   
Sbjct: 611 AAIRLVKNLEVEHRNASLSEQELLAKYVGWGGLANDFFDDYNPKFSMEREELKSLVTDKE 670

Query: 191 ---LLDPDDALFKESPGMIRTLYD--------------PTCGTGGFLTDAMNHVADCGSH 233
              +       +   P +I  ++D              P+ GTG F      H+ +    
Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMWDKLERDGFTGGKILHPSMGTGNFFAAMPKHLREKSE- 729

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G EL+  T A+         L  +   ++              F    F 
Sbjct: 730 --------LYGVELDTITGAIA------NHLHPNSHIEIKG-------FETVAFNDNSFD 768

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PF      D              R+        D   +   +   K     + G
Sbjct: 769 LVISNVPFANIRIAD-------------NRY--------DKPYMIHDYFVKKSLDLVHDG 807

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410
           G+ AI+ S+  +           I + + E       V LP   F     TN+ T +   
Sbjct: 808 GQVAIISSTGTMDKRT-----ENILQDIRETTEFLGGVRLPDSTFKAIAGTNVTTDMLFF 862

Query: 411 SNR 413
              
Sbjct: 863 QKH 865


>gi|296132848|ref|YP_003640095.1| putative RNA methylase [Thermincola sp. JR]
 gi|296031426|gb|ADG82194.1| putative RNA methylase [Thermincola potens JR]
          Length = 689

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 103/343 (30%), Gaps = 66/343 (19%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL----------------DPDDA 197
           ++  I+E  + +      +    + TP  VVH      L                D    
Sbjct: 109 ILGLIHECFLEK--KNQRKPTGIYYTPEPVVHYMVNRTLQAFFADLLNKIRKDRADYRIL 166

Query: 198 LFKESPGMIRTLYDPTCGTGGFLT----DAMNHVADCG---------------SHHKIPP 238
               +      + DP CG+G FL       +      G                +  +P 
Sbjct: 167 QEHLTKLKNHAVIDPACGSGAFLVYIFRQYLKFYQQLGEIFSSATPLSGEVRQGNVVVPE 226

Query: 239 ILVPH-------GQELEPETHAVCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKD 285
            L  H       G +++P+   +    +    +           + L   +Q  +TL   
Sbjct: 227 NLSSHIMDNHIRGIDVDPDAVRLTRLALYYYGINHCAGDFKGFLKSLEVAVQWSNTLEIS 286

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                ++   + NPP+                   L +    L   +      ++     
Sbjct: 287 PERRVKYDLVIGNPPYIANKSIPAG----------LKKNIKELFPTATSQFDSIVPFMEF 336

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIA 404
                  GG  + ++S+  +          E+RR +L+   ++ +V + +  +F   +I 
Sbjct: 337 GIKSLKPGGILSYIVSNKFMVADYG----IELRRLMLKETTLKKLVDVSSQKIFADASIY 392

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             + IL NR   +    V +I+   L    + E +    I  D
Sbjct: 393 PVILILENRAPGKNSV-VTIIDGIVLPGKNKIEEQNPNTIPQD 434


>gi|295099195|emb|CBK88284.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 3253

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 71/268 (26%), Gaps = 74/268 (27%)

Query: 159  YEHLI-----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            YE L        + +  +     F TP  V+                +       + +P+
Sbjct: 1718 YEELKSLLDSEEYAAARASSLTAFYTPPVVIR--------GIYKALAQMGFTQGNILEPS 1769

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDP 268
            CGTG FL          G           +G EL+  +  +       A + +   E+  
Sbjct: 1770 CGTGNFL----------GLLPTDLAGSKAYGVELDSISGRIAGQLYQNANISVNGFETV- 1818

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                                   F   + N PFG                     F    
Sbjct: 1819 -----------------QMPDSFFDVAVGNVPFGD--------------------FKVLD 1841

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             +      L   +   K       GG  A + S   L    +      +R++L +   + 
Sbjct: 1842 KRYDKHHWLIHDYFFGKTLDKVRLGGIVAFITSKGTLDKENSS-----VRKYLAQRADLI 1896

Query: 389  AIVALPTDLF---FRTNIATYLWILSNR 413
              + LP + F     T + + +  L  R
Sbjct: 1897 GAIRLPDNTFKRNAGTEVTSDIIFLQKR 1924


>gi|293556292|ref|ZP_06674877.1| adenine-specific methyltransferase [Enterococcus faecium E1039]
 gi|291601551|gb|EFF31818.1| adenine-specific methyltransferase [Enterococcus faecium E1039]
          Length = 335

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 134/384 (34%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E    +  + +    
Sbjct: 10  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKK 69

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+    R +S +   L+ +        A   +TP  +  L   L+          +
Sbjct: 70  LSFEPEEW--RRLSQL---LLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 119

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 120 KKAPVKILDIAAGMGNLLLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----- 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q     +DL       + +S+ P G  +  + +  ++   + E G
Sbjct: 169 --TSDLTQANVQYFHQD--GLQDLLID-PVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 221

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 222 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 265

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 266 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAQQVKEVLLV---------------- 309

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 310 KLASLKEPEKVTEFFNEFKNWKSS 333


>gi|207111303|ref|ZP_03245465.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 56

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKW 305
              T+ +C   M +  +          +I  G TL        + F   +SNPP+  KW
Sbjct: 1   NLTTYNLCRINMFLHDINYSK-----FHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKW 54


>gi|309750544|gb|ADO80528.1| conserved hypothetical protein p59_4 [Haemophilus influenzae R2866]
          Length = 253

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I    +      + +++  L         E    + TP  + HL  A+ L    +L 
Sbjct: 71  FNIIVEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMAAVTLSDCHSLI 125

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K+   +  TL +PTCG+G  + +A N++ +          +    ++L+     +C   M
Sbjct: 126 KKRGFL--TLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTAALMCYIQM 181

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +  +  +     +   +    L     
Sbjct: 182 TLLHIPGEVIIGNTLKDEVNYHLYTPAH 209


>gi|163867704|ref|YP_001608905.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017352|emb|CAK00910.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1451

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 84/335 (25%), Gaps = 44/335 (13%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCG 215
            +Y    R       E      TP +VV      + D   +   K       ++ DP  G
Sbjct: 666 ELYNEFFRYAFPRTVEKLGIVYTPIEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTG 725

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL--------- 264
           TG F+T  +          +       H  E+    + +    +      L         
Sbjct: 726 TGTFITRLLQSDLIKPEDMEYKYRYDIHANEIVLLAYYIAAINIEATYHGLMKGNYIPFK 785

Query: 265 --------ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                       ++DL + I + ++   +            NPP+    +   D  +   
Sbjct: 786 HIGLTDTFRMIEKQDLMEGILKENSEYLEHQKKLDIKVIFGNPPYSTGQKSANDNAKNTP 845

Query: 317 KNGELGRFGPGLPKISD-----GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                 R        S+           +             G    V ++  +      
Sbjct: 846 YPILDNRISETYAAQSESINMQALYDSYIRAIRWASDRIKDCGIIGFVTNAGFINACSLN 905

Query: 372 SGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTE 416
                +R+ L+E      I  L  +              +F   +     + IL      
Sbjct: 906 G----LRKCLVEEFSSLYIFHLRGNQRTSGELSRKEGGKIFGSGSRAPIAISILVKNPNA 961

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           ++ GK+   +  D            +  + D   +
Sbjct: 962 QQHGKIYFRDIGDYLNREEKLTIIEKFRSIDGITR 996


>gi|294155654|ref|YP_003560038.1| hypothetical protein MCRO_0406 [Mycoplasma crocodyli MP145]
 gi|291600460|gb|ADE19956.1| hypothetical protein MCRO_0406 [Mycoplasma crocodyli MP145]
          Length = 494

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 121/402 (30%), Gaps = 67/402 (16%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L +  + F     +     D  +  +Y  + ++     +      +TP     L 
Sbjct: 102 NDREKLQRFIEYFISDVYYSIKSDDLFLETLYMEIDKK---AEATDKGIVLTPIFAAELM 158

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGF-LTDAMNHVADCGSHHKIPPI------- 239
             L          E       + D   GTG F L      +++     +   I       
Sbjct: 159 VDLA---------EIDYKKDIVADLCSGTGLFSLLSYSKMLSNMNKDFENKKIGHGEYKT 209

Query: 240 ------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                       + +P+   +C+A  L++ L  +   +      Q ST   ++   K   
Sbjct: 210 YEERLYNSIIANDSDPKMITLCLANFLLKSLNHNLIYNQDVLKLQKSTFKIEINNEKITI 269

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + +  + NPP+    E     ++  +KN EL                             
Sbjct: 270 QPNKAILNPPY----EDTHKPLDILYKNIELVT------------------------KRG 301

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLW 408
           + G +  +++ S    N        ++   +L    +E ++ +  DLF  +       ++
Sbjct: 302 SIGNKIVVIIPSQKFGNN------KKVFSKILNISTLETVIKMQEDLFTDSGKSQPASIF 355

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKK--RRIINDDQRRQILDIYVSRENGKFSR 466
           + +  K       ++  N TD       +     +  I  D++ ++L     + N   S 
Sbjct: 356 VFNADKPHSNEDVIRYYNFTDTGFVYLKDSGLVDKNGIYKDKKNELLMKISGKWNRGKSN 415

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                   +  +                + + EADITW  ++
Sbjct: 416 NFIRTWNNFYEVNKDLEFGTKINPKLVDVKKEEADITWENIT 457


>gi|315222591|ref|ZP_07864480.1| type I restriction modification DNA specificity domain protein
           [Streptococcus anginosus F0211]
 gi|315188277|gb|EFU22003.1| type I restriction modification DNA specificity domain protein
           [Streptococcus anginosus F0211]
          Length = 537

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 28/200 (14%)

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +        ++ ++   D      +   + +  FT ++F   LS P FG + + D+ +
Sbjct: 149 FTLTTMDAFYYKVLNEMFDDNDMVDIKQINIYQYEFTSEKFDLILSVPVFGVRDKADESS 208

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                                +  M+   +LA  L+      G  +IVL +   F   AG
Sbjct: 209 ----------------EFICREYDMIAAENLALHLK----SEGILSIVLPAKITF---AG 245

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI----NA 427
               E+R +L     ++ I  LP+ +F  T + T+L I++  +T+E   K + +    NA
Sbjct: 246 GTVKELREFLQSMYCLKEISDLPSGIFDNTGVKTFLLIITTGRTDEVTIK-RFVFEDENA 304

Query: 428 TDLWTSIRNEGKKRRIINDD 447
                          ++ D+
Sbjct: 305 RKTGNKKLVVQDDTFVLEDE 324


>gi|260593522|ref|ZP_05858980.1| putative DNA methylase [Prevotella veroralis F0319]
 gi|260534510|gb|EEX17127.1| putative DNA methylase [Prevotella veroralis F0319]
          Length = 1514

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 40/242 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVSAISDTLTSVNVPIRRCLDPSAGMGAF---AETFARQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGKGNVFVRNEPFEAIGELEDKDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  +            GG  A + S   L + R 
Sbjct: 207 IYDREYSKGKDTLKRESTRAIHNYFFVKGLDCIK-------EGGILAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  Q +
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315

Query: 426 NA 427
            A
Sbjct: 316 EA 317


>gi|145631143|ref|ZP_01786917.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae R3021]
 gi|144983241|gb|EDJ90732.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae R3021]
          Length = 253

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I    +      + +++  L         E    + TP  + HL  A+ L    +L 
Sbjct: 71  FNIIVEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMAAVTLSDCHSLI 125

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K+   +  TL +PTCG+G  + +A N++ +          +    ++L+     +C   M
Sbjct: 126 KKRGFL--TLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTAALMCYIQM 181

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +  +  +     +   +    L     
Sbjct: 182 TLLHIPGEVIIGNTLKDEVNYHLYTPAH 209


>gi|299145511|ref|ZP_07038579.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298516002|gb|EFI39883.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 927

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L+ + V  +++ N+   L         + A  F TP  +  L T L +D  D +     
Sbjct: 311 NLNIEGVDIQILQNL---LQSSIAYAKRKVAGQFATPPQLADLLTRLTIDKKDGITL--- 364

Query: 204 GMIRTLYDPTCGTGGFLTDAM--NHVADCGSHHKIPPILVPHGQELEPETHAVCVAG--- 258
                  DP CGTG  +  A       + G    I  I          +   + ++    
Sbjct: 365 -------DPCCGTGTIIKQAYSLKEEYEIGQEQIIESIWASDKHSFPIQLSTLTLSNPGN 417

Query: 259 --MLIRRLESD---PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
              ++    SD        +   +  +  ++      +  Y +SN PF ++ E  K    
Sbjct: 418 IGKVLHIFRSDVIELHAGQTIVFKDPNNGNQVEKQLPKVDYIISNLPFIREKEIKKLNPN 477

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            +  N  +         +S  S     ++   L    +  G+  ++LS++ L     G+ 
Sbjct: 478 IKEINKLIKEQTKAKKTLSKKSD-IFAYIPFYLYDIISDNGKIGLILSNAWL-----GTD 531

Query: 374 ESEIRRWLLEN-DLIEAIVALPTDL-FFRTNIATYLWILSNRKTEE 417
             EI   L++    I+ +V       F    + T L I + R+  +
Sbjct: 532 YGEIFLELIQKYFNIDCVVISGKGRWFNNAKVVTTLLIATKREISD 577


>gi|296450810|ref|ZP_06892561.1| N-6 DNA methylase superfamily protein [Clostridium difficile NAP08]
 gi|296260371|gb|EFH07215.1| N-6 DNA methylase superfamily protein [Clostridium difficile NAP08]
          Length = 2006

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 67/255 (26%), Gaps = 59/255 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   ++     LL        +        + +P+ G G F    
Sbjct: 1025 EEYAAARESTLNAHYTQPVIIESMYQLL--------QNLGFEKGNILEPSMGVGNFF--- 1073

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G           +G EL+  +  +         L         K  ++     
Sbjct: 1074 -------GMLPDKLQQSRLYGVELDSISGRIAK-------LLYPNADIQIKGFEKTD--- 1116

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               +    F   + N PFG                     +     +      +   +  
Sbjct: 1117 ---YPNDFFDVAIGNVPFGS--------------------YKVNDRQYDKYHFMVHDYFL 1153

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG AA++ +   +          E+R++L E   +   + LP + F     
Sbjct: 1154 AKTIDQLRPGGVAALITTKGTMDKASP-----EVRKYLAERAELLGAIRLPNNAFKANAG 1208

Query: 401  TNIATYLWILSNRKT 415
            T ++  +     R++
Sbjct: 1209 TEVSADILFFQKRES 1223


>gi|37525131|ref|NP_928475.1| hypothetical protein plu1163 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784557|emb|CAE13457.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 240

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +  K     +  +    + +  +  P   +  ++  L     +  ++  + F TP  
Sbjct: 64  QIIKHYKPEDASRFSQLLEHVMMGLEFEPHDFLGGVFMQL-----NLGNKHLKQFFTPWP 118

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +  +   + L   +    + P    TLY+P CG G  +  A   +   G  +     +  
Sbjct: 119 ISLVMAKMQLSDVEQRLTKQPFF--TLYEPACGAGCMVIAAAEVLKMSG--YNPAQHMWV 174

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              +++    ++    + +  +  +     +   ++   +   + 
Sbjct: 175 SCVDIDVVAASMAYIQLSLLGIPGEVVIGDALTNERHRVMYTPVH 219


>gi|224024763|ref|ZP_03643129.1| hypothetical protein BACCOPRO_01491 [Bacteroides coprophilus DSM
           18228]
 gi|224017985|gb|EEF75997.1| hypothetical protein BACCOPRO_01491 [Bacteroides coprophilus DSM
           18228]
          Length = 1111

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 47/243 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ ++    A +       F  +   + +  +P+ G GGFL  AM            
Sbjct: 99  FYTPQFLIDAVAAQI----HGTFFANDLQMHSFLEPSAGIGGFLPVAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P    +  E +  T        L+  L  +    ++   +   T   +    ++F    
Sbjct: 143 -PGTHNYAFEKDTITG-------LVLSLLYEDATTITAGFETIDTQELEH---RKFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D D  +K       G +      I +   +  M L +        GG  
Sbjct: 192 SNIPFGNFRVFDADLWKK------GGIYEQATKTIHNYFFVKAMELLS-------EGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S          +G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFVTSRGV----ADTAGNRFVREYLVNHADLVSAIRLPDALFMQTSGIEVGSDLLIFQKH 294

Query: 414 KTE 416
             +
Sbjct: 295 TNK 297


>gi|332878423|ref|ZP_08446145.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683643|gb|EGJ56518.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 667

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 84/286 (29%), Gaps = 53/286 (18%)

Query: 136 ICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
             + FS  +ELH     +    +  E+  R   S  +     F TP+++     ++L D 
Sbjct: 66  DLELFSMTVELHKLIRDNS--GSAMEY-KRYMDSLKASVLTAFYTPKEITDTLVSVLKDY 122

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                K        + +P+ G G F++    H           P       E +  T  +
Sbjct: 123 GVTPSK--------VLEPSAGMGAFISSVKEH----------SPQADVMAFEKDLLTGRL 164

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                L      D  R       +             F   +SN PFG+    D      
Sbjct: 165 -----LSHLYPEDKIRVSGFEKIE-------KPFNGTFDLAISNVPFGEVAVFDPAFAMS 212

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           +             P           +   K       GG  A + S   +    +   E
Sbjct: 213 D------------SPTRKMAQKAVHNYFFLKGIDTVRDGGIVAFLTSQGVM---NSPRNE 257

Query: 375 SEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                 L E  L+ A + LP +LF     T + + L IL     +E
Sbjct: 258 PVRLEMLKEARLVSA-IRLPNNLFTENANTEVGSDLIILQKDTRKE 302


>gi|223932999|ref|ZP_03624993.1| SNF2-related protein [Streptococcus suis 89/1591]
 gi|223898316|gb|EEF64683.1| SNF2-related protein [Streptococcus suis 89/1591]
          Length = 1967

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 60/220 (27%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F       + +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKQLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVEFNDDSFDLVISNVPFANLRIAD-------- 783

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+        D   +   +   K     + GG+ AI+ S+  +           
Sbjct: 784 -----NRY--------DKPYMIHDYFLKKSLDLVHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + +       V LP   F     T++ T +      
Sbjct: 826 ILQDIRDTTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 865


>gi|313608580|gb|EFR84457.1| N-6 DNA methylase [Listeria monocytogenes FSL F2-208]
          Length = 227

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 10  QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 64

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 65  QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 108

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 109 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK-- 158

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL     + +  K V L N + L
Sbjct: 159 --NGHIEGIIKLPETLFKSEQARKSILILQKADVDVKPPKEVLLANLSSL 206


>gi|257125725|ref|YP_003163839.1| helicase [Leptotrichia buccalis C-1013-b]
 gi|257049664|gb|ACV38848.1| helicase domain protein [Leptotrichia buccalis C-1013-b]
          Length = 2131

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 76/236 (32%), Gaps = 51/236 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D      ++       + +P+CG G F+          G+          +G EL+
Sbjct: 634 KIVIDSIYKGIQQLGFEGGNILEPSCGVGNFI----------GNLPDELEKSKIYGVELD 683

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +               +   ++  Q     K  F+   F   + N PFG     D
Sbjct: 684 SVSGNIAK-------------KLYPESNIQVKGFEKTEFSNNSFDVVIGNVPFG-----D 725

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              +++E++                 + +   +   K       GG  A + SS      
Sbjct: 726 FKVMDREYE---------------KLNFMIHDYFIAKSLDKVKKGGIMAFITSSGTF--- 767

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
                +  +RR++ E   +   + LP D F     T + + +  L  R+   +  +
Sbjct: 768 --DKKDDSVRRYIGERAELLGAIRLPNDTFKGVAGTEVTSDIIFLKKRENTNKEEQ 821


>gi|332877261|ref|ZP_08445010.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684851|gb|EGJ57699.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 2040

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 51/264 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V       + D   A         + + DP+ GTG    +A++           
Sbjct: 98  FYTPPKVADAIVEAIWDTRIAP--------QRILDPSAGTG-VFVNAVDFH--------- 139

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +P T      G++++ L  + R  +     QG    +  + G  +   +
Sbjct: 140 DPYAEITCFEKDPAT------GLILKHLHPEKRVRI-----QGFERIEPKYAGY-YDVAV 187

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +             G   + +   +  + +          GG  
Sbjct: 188 SNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHNYFFMKSVDMVR-------EGGLV 235

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L   +       +R WL+      + + LP +LF     T + + L IL  +
Sbjct: 236 AFITSQGVLNAEQGRP----VREWLMNRCEPVSAIRLPNNLFTEHAGTEVGSDLVILQKK 291

Query: 414 KTEERRGKVQ--LINATDLWTSIR 435
                  + Q   I +  L   IR
Sbjct: 292 AATGELSERQRDFIESRKLSNGIR 315


>gi|291515140|emb|CBK64350.1| Helicase conserved C-terminal domain [Alistipes shahii WAL 8301]
          Length = 2040

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 51/264 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V       + D   A         + + DP+ GTG    +A++           
Sbjct: 98  FYTPPKVADAIVEAIWDTRIAP--------QRILDPSAGTG-VFVNAVDFH--------- 139

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +P T      G++++ L  + R  +     QG    +  + G  +   +
Sbjct: 140 DPYAEITCFEKDPAT------GLILKHLHPEKRVRV-----QGFERIEPKYAGY-YDVAV 187

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +             G   + +   +  + +          GG  
Sbjct: 188 SNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHNYFFMKSVDMVR-------EGGLV 235

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L   +       +R WL+      + + LP +LF     T + + L IL  +
Sbjct: 236 AFITSQGVLNAEQGRP----VREWLMNRCEPVSAIRLPNNLFTEHAGTEVGSDLVILQKK 291

Query: 414 KTEERRGKVQ--LINATDLWTSIR 435
                  + Q   I +  L   IR
Sbjct: 292 AATGELSERQRDFIESRKLSNGIR 315


>gi|189465725|ref|ZP_03014510.1| hypothetical protein BACINT_02086 [Bacteroides intestinalis DSM
           17393]
 gi|189433989|gb|EDV02974.1| hypothetical protein BACINT_02086 [Bacteroides intestinalis DSM
           17393]
          Length = 2040

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 86/264 (32%), Gaps = 51/264 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V       + D   A         + + DP+ GTG    +A++           
Sbjct: 98  FYTPPKVADAIVEAIWDTRIAP--------QRILDPSAGTG-VFVNAVDFH--------- 139

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +P T      G++++ L  + R  +     QG    +  + G  +   +
Sbjct: 140 DPYAEITCFEKDPAT------GLILKHLHPEKRVRI-----QGFERIEPKYAGY-YDVAV 187

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +             G   + +   +  + +          GG  
Sbjct: 188 SNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHNYFFMKSVDMVR-------EGGLV 235

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L   +       +R WL+      + + LP +LF     T + + L IL  +
Sbjct: 236 AFITSQGVLNAEQGRP----VREWLMNRCEPVSAIRLPNNLFTEHAGTEVGSDLVILQKK 291

Query: 414 KTEERRGKVQ--LINATDLWTSIR 435
                  + Q   I +  L   IR
Sbjct: 292 AATGELSERQRDFIESRKLSNGIR 315


>gi|298376863|ref|ZP_06986818.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298266741|gb|EFI08399.1| DNA methylase [Bacteroides sp. 3_1_19]
          Length = 1926

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + E    +          I +   L  +            GG  
Sbjct: 195 SNIPFG-----DVAVFDPEFSGSKDPARHSAARTIHNYFFLKNLDAVR-------EGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|15896771|ref|NP_350120.1| Type II restriction enzyme, methylase subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|15026629|gb|AAK81460.1|AE007850_1 Type II restriction enzyme, methylase subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|325510942|gb|ADZ22578.1| Type II restriction enzyme, methylase subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 993

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 142/476 (29%), Gaps = 121/476 (25%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E    PT   ++E  L       +++   + A    YN+  +    +      +
Sbjct: 238 IFLRICEDRRLPTYHKLKE-ILEEKEFIKEMDKLFREADKK-YNSRLFRDENILFDLNND 295

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            + + I                        K+   +   +               ++  I
Sbjct: 296 VIRNTIEEL------------------YYPKSPYAFNFIQ-------------PNILGEI 324

Query: 159 YEHLI-RRFGSEVSE----------GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           YE  +  +   +  +            +   TP ++V      +L+      K S  +  
Sbjct: 325 YELFLAEQLVIQDGQVVLQKKDKSLHRDVVTTPLEIVKYIVNRVLEECCRNKKPSEILKL 384

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV------------------------PH 243
            + D  CG+G FL +  + +    +   I   +                           
Sbjct: 385 RIADIACGSGIFLIEVYDWIIKYITEWYIKNDIKHLMSIGNGNYKLSFDEKKEILEKCIW 444

Query: 244 GQELEPETHAVCVAGMLIRRLESDPR----------RDLSKNIQQGST------------ 281
           G +++     V    ++++ LES+             DL  NI+ G++            
Sbjct: 445 GIDIDVHAVEVAKFNLILKLLESETEPSLRDKQKILPDLGNNIRYGNSLIDFGKISYSKL 504

Query: 282 -----------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                        +++  G+ F   L NPP+    +      +KE K  +          
Sbjct: 505 TQLDKNEIVPFDWENINNGELFDVILGNPPYVSTEDMINLLNKKEVKAYKSKYN------ 558

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S G          +        G    ++ +      +  SGES +R  L +N+ +E  
Sbjct: 559 TSKGQFDKYFIFVERAIEKVKANGIIGCIIPNKF---SKIKSGES-LREMLSKNEYVEEY 614

Query: 391 VALPT-DLF--FRTNIATYLWILSNRKTEERRGKVQLI---NATDLWTSIRNEGKK 440
           +   +  LF      I + + IL   +  E +     I   N +  ++++ ++  K
Sbjct: 615 IDFGSLQLFKYRNKTIYSSILILKKARQREFK----FIEVDNISKWFSNLESKKVK 666


>gi|170717936|ref|YP_001784986.1| type III restriction protein res subunit [Haemophilus somnus 2336]
 gi|168826065|gb|ACA31436.1| type III restriction protein res subunit [Haemophilus somnus 2336]
          Length = 1365

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/587 (11%), Positives = 148/587 (25%), Gaps = 89/587 (15%)

Query: 61   AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                +  D E    +A +        +L    +    N +   ++      +   E+   
Sbjct: 636  DLNNAISDDEVIEMLAQHLITKPVFDALFANDNFTEHNPMSKALSETITILQG--ENIAN 693

Query: 121  SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + T    E    + +   N    E     + D     +Y++   +   ++ +      TP
Sbjct: 694  AETKQLQEFYEGIQQRISNIKSPEGRQSIIKD-----LYDNFFAQAFKKLKDKLGIVYTP 748

Query: 181  RDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
              VV      + D   +            + DP  GTG F+T  +               
Sbjct: 749  IQVVDFIIRSVEDVLQNEFNASLADKGVQILDPFTGTGTFITR-LLQSGIIPPEKLPQKY 807

Query: 240  LVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLF---------- 287
               H  E+    + +    +  +   L +    + +           D F          
Sbjct: 808  NEIHANEIVLLAYYIAAINIESVYHSLLAKNNENPTAYQPFNGICLTDTFQMYEKEDLID 867

Query: 288  -------------TGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKI- 331
                                 + NPP+  G+    D +         E  R    L    
Sbjct: 868  QILVENSERRKRQKELDIQVIIGNPPYSVGQTSANDNNENTSYPLLEEKIRNTYALHSTA 927

Query: 332  --SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
               +      +             G    + ++  L    A      +R+ L +      
Sbjct: 928  TNKNALYDSYIKAIRWASDRIQDKGVIGFITNAGFLETNAANG----LRKCLHDEFSDLY 983

Query: 390  IVAL---------------PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            I  L                 ++F   T +A  + +      +E+ G +   +  D  + 
Sbjct: 984  IFHLRGAIRGKSGISAKKEGQNVFDIMTGVAISILV--KNPDKEKNGNIHFYDIGDFLSK 1041

Query: 434  IRNEGK------KRRIINDDQRRQIL-DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
                 K         I   +Q ++I+ D +    N +      Y   G +      P   
Sbjct: 1042 KEKLEKIAEFGSINGITKTEQWQEIIPDQFNDWLNQRDPNFDSYMVLGSKDKNNKEPTIF 1101

Query: 487  S--------------FILDKTGL-ARLEADITWRKLS------PLHQSFWLDILKPMMQQ 525
                           +   K  L   +   IT+              +  +D ++   + 
Sbjct: 1102 ENYSAGLQTNRDAWVYNFSKERLSENMNNSITFFNNEIDRLNIQRKTNLEIDPVQFADKD 1161

Query: 526  IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
                 W+ S   +  K  + +  K K  +     +       D   +
Sbjct: 1162 DSKISWSSSLYPKLSKGEKERFSKDKIRQGLYRPYTKNHIYFDKTFN 1208


>gi|319647043|ref|ZP_08001269.1| endonuclease and methylase LlaGI [Bacillus sp. BT1B_CT2]
 gi|317390867|gb|EFV71668.1| endonuclease and methylase LlaGI [Bacillus sp. BT1B_CT2]
          Length = 1570

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 24/261 (9%)

Query: 149  TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIR 207
                 ++  +Y+   +    E +E      TP +VV      + D     F K       
Sbjct: 845  KAKQDIIIQLYDKFFKIGFRETTERLGIVFTPVEVVDFIIHSVEDVLKKHFGKSISDEGV 904

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL- 264
             + DP  GTG F+   +                  H  E+   ++ +    +      + 
Sbjct: 905  HILDPFTGTGTFIVRLIQSGLISKEDLLRKYTQELHANEIILLSYYIAAINIEETFHSIM 964

Query: 265  --ESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWEK 307
              +  P   +       ST  +D F  + F                  + NPP+  +   
Sbjct: 965  KGDYTPFNGIVLTDTFESTEKEDSFEDELFGENNERLERQRKEPIFAIIGNPPYSARQRS 1024

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH--LANKLELPPNGGGRAAIVLSSSPL 365
            + D  E        GR      K S  + L  ++           +      +V   +  
Sbjct: 1025 ENDNNENVAYPILEGRIADTYAKYSKANALHTLYDSYIKAFRWSTDRLKNMGVVGFITAS 1084

Query: 366  FNGRAGSGESEIRRWLLENDL 386
                  S +  +R+ L E+  
Sbjct: 1085 SYIDKTSTDG-LRKCLHEDFN 1104


>gi|270290937|ref|ZP_06197160.1| site-specific DNA-methyltransferase (adenine-specific) [Pediococcus
           acidilactici 7_4]
 gi|270280333|gb|EFA26168.1| site-specific DNA-methyltransferase (adenine-specific) [Pediococcus
           acidilactici 7_4]
          Length = 343

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 117/366 (31%), Gaps = 54/366 (14%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           ++  GS +D E   K+     Y   + S   L      + L+++I +  +      +  D
Sbjct: 3   ISEEGSQMDTEKIEKI-----YRVFKESAELLQKNLDVDFLDAFIETGDNLITGEIQVED 57

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                A ++K   +Y         + +        +    + ++ +        A    T
Sbjct: 58  GKPDQATVQKLKQVYA--------DFNWQEYEPEELRKAIQLVMIQANRVERIQANHQFT 109

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      +L +        S   + +++DP  GTG  L+  +N+  D          
Sbjct: 110 PEAI-----GMLFNYIIENLPLSQDQV-SIFDPAVGTGNLLSTILNYFQDH------QVK 157

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G + +    A+     +   L+ D     S           D    K     +S+ 
Sbjct: 158 FNGTGIDNDDTMLAIASMSFIFEHLKVDLYHQDSI----------DNLLVKNADIVVSDL 207

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P G  +  D+  V  E ++ E   F                 L  +       GG    +
Sbjct: 208 PVG-YYPIDERTVGFETRSSEGHSF-------------VHHLLIEQSMKAVRPGGFGVYL 253

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEER 418
           + S+      A     ++  +  +   ++AI+ LP+ +F        + IL    +  ++
Sbjct: 254 VPSNLFQTEEA----KKLLAFFHDKIYLQAILNLPSKMFKDAKAQKSILILQKVGQNAKQ 309

Query: 419 RGKVQL 424
             +V L
Sbjct: 310 ADQVLL 315


>gi|189459533|ref|ZP_03008318.1| hypothetical protein BACCOP_00157 [Bacteroides coprocola DSM 17136]
 gi|198275035|ref|ZP_03207567.1| hypothetical protein BACPLE_01194 [Bacteroides plebeius DSM 17135]
 gi|189433785|gb|EDV02770.1| hypothetical protein BACCOP_00157 [Bacteroides coprocola DSM 17136]
 gi|198272482|gb|EDY96751.1| hypothetical protein BACPLE_01194 [Bacteroides plebeius DSM 17135]
          Length = 2040

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 51/264 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V       + D        +  + + + DP+ GTG F++    H          
Sbjct: 98  FYTPPKVADAIVEAIWD--------TRIVPKRILDPSAGTGVFVSAVDFHA--------- 140

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +P T      G++++ L  + R  +     QG    +  + G  +   +
Sbjct: 141 -PYAEITCFEKDPAT------GLILKHLHPEKRVRV-----QGFERIEPKYAGY-YDVAV 187

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +             G   + +   +  + +          GG  
Sbjct: 188 SNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHNYFFMKSVDMVR-------EGGLV 235

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L   +       +R WL+      + + LP +LF     T + + L IL  +
Sbjct: 236 AFITSQGVLNAEQGRP----VREWLMNRCEPVSAIRLPNNLFTEHAGTEVGSDLVILQKK 291

Query: 414 KTEERRGKVQ--LINATDLWTSIR 435
                  + Q   I +  L   IR
Sbjct: 292 AATGELSERQRDFIESRKLSNGIR 315


>gi|325914675|ref|ZP_08177016.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539177|gb|EGD10832.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 1048

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 78/250 (31%), Gaps = 47/250 (18%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +    +   E    + TP DV  L   +L+   D++ + +   + ++ D + G G  +  
Sbjct: 31  LGGLAAARRECLAQYFTPDDVAALMWRILIPEMDSIRQRTGCKV-SVIDNSIGKGSLI-- 87

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                A    H         HG+ LE    A+  A      +E D       +++     
Sbjct: 88  ---QFARADQHK--VAGFDIHGESLEALGKALEAA-----GVEHDLLCADMTDVR----- 132

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  KR+   L+NPPF    +        ++     GRFGP    +S          
Sbjct: 133 ------PKRYDIALANPPFSVHLQSVH---MMDYACTSYGRFGPNTSAMSHP-------- 175

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FR 400
                          +VL  +   +      ES  R          A+V LP   F    
Sbjct: 176 --YALAQALEAAEIGVVLLPTTYAHHAWNQHESSAR--------FHALVDLPARTFIDQG 225

Query: 401 TNIATYLWIL 410
           T I   L + 
Sbjct: 226 TAIEVSLIVF 235


>gi|260428543|ref|ZP_05782522.1| N-6 DNA Methylase family protein [Citreicella sp. SE45]
 gi|260423035|gb|EEX16286.1| N-6 DNA Methylase family protein [Citreicella sp. SE45]
          Length = 575

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +  PPFG   + D       H   +      GL +   G +L         +     
Sbjct: 179 DVEVMLPPFGVTGKDD-------HTIPQRTLASLGLERGKIGRLLSETLAIA--DATEMT 229

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILS 411
            GR  +  +   +F       E+  R  LL +D +EAI+ +P+  +F  T I T L  LS
Sbjct: 230 RGRVILSTTPGSMFRMV--GSETVARENLLRSDRLEAIMGVPSGMMFTNTAIPTLLVTLS 287

Query: 412 NRKTEERRGKVQLIN 426
              T  +R  V+ ++
Sbjct: 288 --PTAGKRNTVRFVD 300


>gi|330822331|ref|YP_004362552.1| hypothetical protein bgla_1p1280 [Burkholderia gladioli BSR3]
 gi|327374168|gb|AEA65522.1| hypothetical protein bgla_1p1280 [Burkholderia gladioli BSR3]
          Length = 293

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            + ++L        V+ ++Y  L        S  A  F TP  V  +   + +     + 
Sbjct: 109 LAFLDLSKMGEFADVLGSLYMRL-----ELGSSRAGQFFTPYHVSRMMGQIQVGDGTDIR 163

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
                   T+ DP CG GG +    +     G  H+
Sbjct: 164 ARE---FVTVSDPACGAGGMIIAFADAARSVGLDHR 196


>gi|294807402|ref|ZP_06766207.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445393|gb|EFG14055.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1926

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + +    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPDFSGSKDPARLSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|150004142|ref|YP_001298886.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
 gi|149932566|gb|ABR39264.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
          Length = 255

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 19/162 (11%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S+        F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKSGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MV-LCTD------SGETATGKRICDPTCGSGRLLLAY--HVRHLGNY--------LVAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +      + V  ML+     +     S   +          T
Sbjct: 159 VNRTCCLMTVCNMLVHGCIGEVIHHDSLFPENFMDGWMVNHT 200


>gi|301309531|ref|ZP_07215473.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300832620|gb|EFK63248.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1926

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + +    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPDFSGSKDPARLSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|254884231|ref|ZP_05256941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837024|gb|EET17333.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1658

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 98/335 (29%), Gaps = 57/335 (17%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  ++      + D     F  +   + T  +P+ G GGFL      V D  +H   
Sbjct: 99  FYTPTFLIQAVAEQIKD----TFTANDLKMGTFLEPSAGIGGFL-----PVGDMATHRTA 149

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
               +  G              +++  L  D +  +        T+        RF    
Sbjct: 150 FEKDLLTG--------------LVLSALHPDTQVFIEGFE----TIDSQETEHNRFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG                     F       +  S     +   K     N GG  
Sbjct: 192 SNIPFG-------------DFRVFDNTFSKKGGIYAQASKTIHNYFFLKAVEKLNEGGIL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S           G   +R +L+    +   + LP  LF +T+   + + L I    
Sbjct: 239 AFVTSRGI----ADTQGNQFVRDYLVHRCNLITALRLPDSLFMQTSGIEVGSDLLIFQKS 294

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--SRMLDYR 471
                  KV L +   L+     E             +   ++   +   F  SR+   +
Sbjct: 295 -----GRKVTLTDREKLFIETTREIVPGSDQYTGHTNK---LFTLPKTALFTESRIQTNQ 346

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              Y R    +          + + + + +  +RK
Sbjct: 347 YGEYVRKYRWQGEEADLQQTLSSMLKADFERFFRK 381


>gi|145639576|ref|ZP_01795180.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae PittII]
 gi|145271367|gb|EDK11280.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae PittII]
          Length = 253

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L         E    + TP  + HL  A+ L    +L K+   +  TL +P
Sbjct: 84  DFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMAAVTLSDCHSLIKKRGFL--TLQEP 136

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  + +A N++ +          +    ++L+     +C   M +  +  +     
Sbjct: 137 TCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTAALMCYIQMTLLHIPGEVIIGN 194

Query: 273 SKNIQQGSTLSKDLF 287
           +   +    L     
Sbjct: 195 TLKDEVNYHLYTPAH 209


>gi|332877324|ref|ZP_08445072.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684707|gb|EGJ57556.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1926

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + +    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPDFSGSKDPARLSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|69244404|ref|ZP_00602820.1| conserved domain protein [Enterococcus faecium DO]
 gi|258614769|ref|ZP_05712539.1| adenine-specific methyltransferase [Enterococcus faecium DO]
 gi|260562412|ref|ZP_05832926.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293560724|ref|ZP_06677203.1| adenine-specific methyltransferase [Enterococcus faecium E1162]
 gi|293566159|ref|ZP_06678562.1| adenine-specific methyltransferase [Enterococcus faecium E1071]
 gi|294618784|ref|ZP_06698311.1| adenine-specific methyltransferase [Enterococcus faecium E1679]
 gi|294622220|ref|ZP_06701280.1| adenine-specific methyltransferase [Enterococcus faecium U0317]
 gi|314938555|ref|ZP_07845839.1| conserved domain protein [Enterococcus faecium TX0133a04]
 gi|314940900|ref|ZP_07847806.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|314948079|ref|ZP_07851481.1| conserved domain protein [Enterococcus faecium TX0082]
 gi|314952037|ref|ZP_07855060.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|314991918|ref|ZP_07857373.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|314995176|ref|ZP_07860290.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|68196345|gb|EAN10773.1| conserved domain protein [Enterococcus faecium DO]
 gi|260073336|gb|EEW61677.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291590085|gb|EFF21877.1| adenine-specific methyltransferase [Enterococcus faecium E1071]
 gi|291594972|gb|EFF26322.1| adenine-specific methyltransferase [Enterococcus faecium E1679]
 gi|291598262|gb|EFF29355.1| adenine-specific methyltransferase [Enterococcus faecium U0317]
 gi|291605315|gb|EFF34770.1| adenine-specific methyltransferase [Enterococcus faecium E1162]
 gi|313590585|gb|EFR69430.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|313593502|gb|EFR72347.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|313595827|gb|EFR74672.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|313600258|gb|EFR79101.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|313642112|gb|EFS06692.1| conserved domain protein [Enterococcus faecium TX0133a04]
 gi|313645495|gb|EFS10075.1| conserved domain protein [Enterococcus faecium TX0082]
          Length = 335

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 131/384 (34%), Gaps = 64/384 (16%)

Query: 86  YSLSTLGSTNTRNNL-ESYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG 142
           ++ +       +N L  S++ ++ +NA+ + +D+       +   E    +  + +    
Sbjct: 10  FNQNLEAIQLLQNALGTSFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKK 69

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +   P+    R +S +   L+ +        A   +TP  +  L   L+          +
Sbjct: 70  LSFEPEEW--RRLSQL---LLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTN 119

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + D   G G  L   + ++++ G   +        G +++    AV  +     
Sbjct: 120 KKAPVKILDIAAGMGNLLLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----- 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              SD  +   +   Q               + +S+ P G  +  + +  ++   + E G
Sbjct: 169 --TSDLTQANVQYFHQDGLQE---LLIDPVDFAISDLPIG--YYPNDEKAKEFLTSTEEG 221

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                       S    + L   ++      G    ++ S  L   ++     EI++W  
Sbjct: 222 H-----------SYAHHLLLEQSMKYVKPD-GFGLFLMPSGFLETDQS----EEIKKWFK 265

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKR 441
           E   ++ ++ LP +LF        + IL  +  + ++ K V L+                
Sbjct: 266 EEGYLQGMIQLPDELFRNKQSQKSILILQKKGPQAQQVKEVLLV---------------- 309

Query: 442 RIINDDQRRQILDIYVSRENGKFS 465
           ++ +  +  ++ + +   +N K S
Sbjct: 310 KLASLKEPEKVTEFFNEFKNWKSS 333


>gi|294645516|ref|ZP_06723215.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
 gi|292639142|gb|EFF57461.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
          Length = 1453

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP ++      +L +               + +P+ G G F+   +            
Sbjct: 105 FYTPPEITGTIADVLHEHGIRP--------DRVLEPSAGVGAFVDAVLE----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G +++ L    +  +    +              F   +
Sbjct: 147 RPDADIMAFEKDLMT------GKILKHLHPGQKVRVQGFEKIEKPFMNH------FDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    + +    +          I +   L       K       GG  
Sbjct: 195 SNIPFG-----DVAVFDPDFSGSKDPARLSAARTIHNYFFL-------KSLDAVREGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L           IR +++ +  +  +  LP +LF     T + + L IL   
Sbjct: 243 AFITSQGVLDAPTNAP----IREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQKN 298


>gi|329963600|ref|ZP_08301078.1| helicase protein [Bacteroides fluxus YIT 12057]
 gi|328528505|gb|EGF55478.1| helicase protein [Bacteroides fluxus YIT 12057]
          Length = 2040

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 49/240 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V       + D   A         + + DP+ GTG    +A++           
Sbjct: 98  FYTPPKVADAIVEAIWDTRIAP--------QRILDPSAGTG-VFVNAVDFH--------- 139

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +P T      G++++ L  + R  +     QG    +  + G  +   +
Sbjct: 140 DPYAEITCFEKDPAT------GLILKHLHPEKRVRI-----QGFERIEPKYAGY-YDVAV 187

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    +             G   + +   +  + +          GG  
Sbjct: 188 SNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHNYFFMKSVDMVR-------EGGLV 235

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L   +       +R WL+      + + LP +LF     T + + L IL  +
Sbjct: 236 AFITSQGVLNAEQGRP----VREWLMNRCEPVSAIRLPNNLFTEHAGTEVGSDLVILQKK 291


>gi|307564603|ref|ZP_07627140.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
 gi|307346688|gb|EFN91988.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
          Length = 1534

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 128/424 (30%), Gaps = 74/424 (17%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGVF---AETFARQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      ++    ++    SN PFG     D+ 
Sbjct: 159 TARISQA---LH----PHGKGNVFVRNEPFEAIGEIEDKDKYDLITSNIPFGDFMVYDR- 210

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                    E  R    L + S  +     +   K       GG  A + S   L + R 
Sbjct: 211 ---------EYTRGKDTLKRES--TRAIHNYFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINA 427
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E          
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE---------- 305

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--------DYRTFGYRRIK 479
                           I++   +Q ++     +    S +         D++   +R I 
Sbjct: 306 ----------------ISEGIEQQFVETLSVPKEEGSSVVFKHNSLFAGDWKDIAHRIIA 349

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
             R +            R +  I       +     L++ +   +++Y  G   +  +  
Sbjct: 350 TERTMGTDPYGKPAWEYRFDGSIGDM-AESIRTQLSLEVEQRFDRKLYETGIPMTEEERQ 408

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            K  E +  K+  +              +   + + D   + +P    TE E +    + 
Sbjct: 409 -KEAEKQLHKLGITVDLPKEDPKTDKEAENAYNLMPDSIRKQLPKLYSTEKELIGDKIAY 467

Query: 600 QDYF 603
             YF
Sbjct: 468 ARYF 471


>gi|52550522|gb|AAU84371.1| BpmI endonuclease-methyltransferase fusion protein type IIG
           [uncultured archaeon GZfos9D8]
          Length = 957

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 102/344 (29%), Gaps = 84/344 (24%)

Query: 153 RVMSNIYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++ N+YE  + +                EV +    + TP+ +V       +       
Sbjct: 322 EILGNVYEQFLGKVIRLTAGHQAKVETKPEVKKAGGVYYTPQYIVDYIVKNTVGKLVEGK 381

Query: 200 KESPG--MIRTLYDPTCGTGGFLTDAMNHVADCG-------------------------- 231
           +++P       + DP CG+G FL  A  ++                              
Sbjct: 382 EKTPEEIAGIKILDPACGSGSFLIGAYTYLLRYHLDWYTSNEPKKHKEAVFQVRENEWYL 441

Query: 232 --SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSK 274
             +  K   +    G +++P+   V    +L++ LE++ R                +L  
Sbjct: 442 TTAEKKRILLNNIFGVDIDPQAVEVTKLSLLLKVLENESRESIDQQVKLGLEGVLPNLEG 501

Query: 275 NIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFG 325
           NI+ G++L    F G       F            W+ D     K  K+G      G   
Sbjct: 502 NIRCGNSLIGPDFYGAGQQETLFDEVEMRRVNVFDWDDDVKGFGKIMKHGGFDCVIGNPP 561

Query: 326 PGLPKIS------DGSMLFLMH-------LANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            G    S      +G      +          K            ++  ++ L N     
Sbjct: 562 YGALITSAEIKYLNGKFNLQQYSLDTYLLFVEKALTLLEDYTLLGMIFPNTWLLNLTMD- 620

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
              +IR ++     +E IV     +F +  + T + I      +
Sbjct: 621 ---KIRNYIFHETQVEEIVHYRHPVFPKATVDTEIVIFRKGSPK 661


>gi|237719896|ref|ZP_04550377.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450448|gb|EEO56239.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1023

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|94502002|ref|ZP_01308509.1| hypothetical protein RED65_02033 [Oceanobacter sp. RED65]
 gi|94425878|gb|EAT10879.1| hypothetical protein RED65_02033 [Oceanobacter sp. RED65]
          Length = 246

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              +  +Y  L        S     F TP DV  +    +     +L +E P +  TL +
Sbjct: 81  SDFLGAVYMEL-----DIGSSHIGQFFTPYDVSRMMAKAIYADSFSLLEEKPFL--TLCE 133

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G G  +    + +   G + +    L     +++P    +    + +  + ++    
Sbjct: 134 PCVGAGSMVIAIADEMLSNGFNPQNQ--LWVSCVDIDPLAARMAFIQLSLLGIPAEVIVG 191

Query: 272 LSKNIQQGSTLSKDLF 287
            +  ++        + 
Sbjct: 192 NTLTMKVTEVFRTPMH 207


>gi|1171043|sp|P43423|MTC1_BACST RecName: Full=Modification methylase BseCI; Short=M.BseCI; AltName:
           Full=Adenine-specific methyltransferase BseCI
 gi|619639|emb|CAA56041.1| methyltransferase [Geobacillus stearothermophilus]
          Length = 579

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 34/254 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +  +    +LD     FK     +  + DP CG G  L  A+N VA   
Sbjct: 14  KATGAHFTPDKLAEVIAKRILDY----FKGEKNRVIRVLDPACGDGELLL-AINKVAQS- 67

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----GSTLSKDL 286
               +   L   G + + +  A+ +A   + R      R ++K+  +      +    ++
Sbjct: 68  ----MNIQLELIGVDFDID--AINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNI 121

Query: 287 FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              +     ++NPP+   +    + A +   K    GR                      
Sbjct: 122 EELEPVDIIIANPPYVRTQILGAEKAQKLREKFNLKGRVD------------LYQAFLVA 169

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +       G   ++ S+  L     GS     R++L+ N  I  I+ L    FF   +  
Sbjct: 170 MTQQLKSNGIIGVITSNRYLTTKGGGST----RKFLVSNFNILEIMDLGDSKFFEAAVLP 225

Query: 406 YLWILSNRKTEERR 419
            ++    +  E ++
Sbjct: 226 AIFFGEKKNKEYQK 239


>gi|148381041|ref|YP_001255582.1| modification methylase family protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|148290525|emb|CAL84653.1| putative DNA modification methyltransferase [Clostridium botulinum
           A str. ATCC 3502]
          Length = 581

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/534 (14%), Positives = 160/534 (29%), Gaps = 89/534 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           + S + +F DN + IF      + +     +   Y+   NF   +L      +  +   Y
Sbjct: 1   MVSNMNAFKDNIEKIF------NILISPINSIYKYEAINNF-KYKLSIGKNENISLKY-Y 52

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +  +      +      TP+++ +      ++ +D +          + DP+CG G  
Sbjct: 53  EFIKGK------KETGVIYTPQEISNYMIENTINKEDVIN----NPFIKILDPSCGCGNI 102

Query: 220 LTDAMNHVAD---------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           L     ++ +            ++            L+   +   +  + I+ L  D   
Sbjct: 103 LIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILIIDLFY 162

Query: 271 DLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 +        L       F   + NPP+         +V+KE+      R+G   
Sbjct: 163 LTGYYNKNNFKKKDFLIEDINNNFDIYIGNPPYVGH-----KSVDKEYSMLLKERYGYIY 217

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
               D S  F ++  N      N   +   + S   + +    +    +R++L EN  I 
Sbjct: 218 KDKGDISYCFFINALNY----SNINSKITFITSRYFMESKSGHN----LRKYLKENCNIY 269

Query: 389 AIVALPTDLFFR------TNIATYLWILSNRKTEE-------RRGKV---QLINATDLWT 432
            I+      F+         I   +  +      +       R  KV      N  D + 
Sbjct: 270 KILD-----FYGIRPFKAVGIDPAIIFIDRNIGNKVEIIKPCRYEKVKMGLFFNNEDKYE 324

Query: 433 SIRNEGKKRR----IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
                  + +    ++ DD  R I++   ++ N     +            ++     +F
Sbjct: 325 KFYVHMSELKQDGWVLIDDGSRDIINKIENKTNKTLGEICT------SYQGIITGCDKAF 378

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           I+D+  +          K   L +S     +K          + +SF+  S      K  
Sbjct: 379 IVDEKTI----------KKENLERSIIKPWIKSSYINREKINFRDSFIIYSDLIENVKKY 428

Query: 549 KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
                   I+  I  +  K            +W       +++     + I  Y
Sbjct: 429 ------PNIIRHIEKYKDKLENRRECKKKVRKWYELQWGRKFDIFEDKKIIFPY 476


>gi|187928678|ref|YP_001899165.1| hypothetical protein Rpic_1595 [Ralstonia pickettii 12J]
 gi|241114233|ref|YP_002973708.1| hypothetical protein Rpic12D_5237 [Ralstonia pickettii 12D]
 gi|187725568|gb|ACD26733.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 gi|240868806|gb|ACS66464.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 310

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ + Y  L        ++ A  F TP  V  +  A+ ++  D    E   +  T+ +P
Sbjct: 113 DVLGHTYMLL-----ELGNDRAGQFFTPYSVSSMMAAMQVNDHDPDVAEHGFI--TVMEP 165

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG GG +      +   G  H     +     +++P    +    + +  + +      
Sbjct: 166 TCGAGGMVIAMAEAMHQAG--HNYQTAMHATCIDIDPRCVHMTYVQLALLHIPAVVILGN 223

Query: 273 SKNIQQGSTLSKDLF 287
           S  +++         
Sbjct: 224 SLMLEEREVWYTPAH 238


>gi|328952480|ref|YP_004369814.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452804|gb|AEB08633.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1094

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 84/294 (28%), Gaps = 45/294 (15%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +    ++    + + YE  +  +  E  +    + TP  VV       +D         P
Sbjct: 288 DFGRGSIEKDPVVHFYETFLAAYDPEKRKVRGVYYTPEPVVSYIVR-AIDHVLKEGFSRP 346

Query: 204 G----MIRTLYDPTCGTGGFL----------TDAMNHVADCGSHHKIPPILVPHGQELEP 249
                    + DP CGTG FL            A        ++     +    G EL  
Sbjct: 347 WGLADPNTLILDPACGTGTFLHSVIALMYDTLCAQGQAGGWRAYVSDSLLPRVFGFELLM 406

Query: 250 ETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT------------------- 288
             +AV     G+ ++    D        +   +TL + L                     
Sbjct: 407 APYAVAHVKLGLALQERGYDFPMGRRLGVYLTNTLEEALKKSQVLPLAGFITEESNTAAA 466

Query: 289 ---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               +     L NPP+  +     D +    K+ +     P   K         +     
Sbjct: 467 IKQDEPIEVILGNPPYSVQSANKGDWIRSLIKDYKKVDGLPLDEKNPKSLQDDYVKFLRW 526

Query: 346 --LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
               L   G G  A++ +   L      +    +R+  L++     +V L  +L
Sbjct: 527 GQWRLDRTGQGVLAMITNHGYL----DNATFRGMRQAFLKSFNEIYLVNLHGNL 576


>gi|319641273|ref|ZP_07995972.1| DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317387146|gb|EFV68026.1| DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 1661

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 85/243 (34%), Gaps = 47/243 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ ++    A +       F  +   +++  +P+ G GGFL  AM            
Sbjct: 99  FYTPQFLIDAVAAQI----HKTFSANGLQMQSFLEPSVGIGGFLPVAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P    +  E +  T      G+++  L  D     +       T+       ++F    
Sbjct: 143 -PGTRSYAFEKDTIT------GLVLSLLHEDATTVTAGFE----TIGTQELEHRKFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D D  +K       G +      I +   +  M L +        GG  
Sbjct: 192 SNIPFGNFRVFDADLWKK------GGIYEQATKTIHNYFFVKAMELLS-------EGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S          +G   +R +L+ +  + + V LP  LF +T+   + + L I    
Sbjct: 239 AFVTSRGV----ADTAGNKFVREYLVNHADLISAVRLPDALFMQTSGIEVGSDLLIFQKH 294

Query: 414 KTE 416
             +
Sbjct: 295 TNK 297


>gi|294011835|ref|YP_003545295.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium japonicum UT26S]
 gi|292675165|dbj|BAI96683.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium japonicum UT26S]
          Length = 267

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 8/160 (5%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDAL 198
           F+ + +  ++ P  V+  I+  L        +     F TP  V  +      +D  +  
Sbjct: 74  FAEVTMALESEPGDVLGAIFGEL-----ELHNAARGQFFTPYSVCRMMAEATGIDSQEMR 128

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
              +     T  +P CG G  +      +   G+       L     +++     +C   
Sbjct: 129 DIIACEGFVTAMEPACGAGAMVIALAETMR--GADINYQRHLHVTAVDIDRRAVHMCYIQ 186

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           + +  + +      S +++              +   L+N
Sbjct: 187 LSLLHVPAVVIVGDSLSLKMQDYWYTPAHILGGWTQKLAN 226


>gi|148543794|ref|YP_001271164.1| adenine-specific DNA methylase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|184153197|ref|YP_001841538.1| putative modification methylase [Lactobacillus reuteri JCM 1112]
 gi|227363226|ref|ZP_03847358.1| DNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682166|ref|ZP_08161684.1| adenine-specific methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530828|gb|ABQ82827.1| Adenine-specific DNA methylase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|183224541|dbj|BAG25058.1| putative modification methylase [Lactobacillus reuteri JCM 1112]
 gi|227071682|gb|EEI09973.1| DNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978810|gb|EGC15759.1| adenine-specific methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 277

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 102/282 (36%), Gaps = 40/282 (14%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL+   V   ++  I +    +   + +  A   MTP  +  +   L+            
Sbjct: 7   ELNLQNVKPEIIRQIIQLSFLKVIRKDAIQANHQMTPDTIGLIMAFLI------EKVTKI 60

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I+T++DP  GT   LT  MN +   G        +V +G + + +   V         
Sbjct: 61  KEIKTVFDPAVGTANLLTTVMNQLKVNGD-----KDIVGYGIDNDEDMLEVAS------- 108

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           + ++ +    K   Q +  + D+    +    +S+ P G         +++  KN +  R
Sbjct: 109 VSTELQHLNVKLYHQDAVTALDIP---QCDLAISDLPIGYY------PLDENAKNYQ-TR 158

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G          ++ HL  +  +     G   + L  S LF  +         +W+  
Sbjct: 159 AKEGHS--------YVHHLLIEQSMNYLKPGAFGVFLVPSSLFQTKESQSFV---KWIQS 207

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GKVQL 424
              ++ ++ LP +LF   N    + +L  +  + ++  KV L
Sbjct: 208 VAYLQGLINLPAELFANPNAQKSILLLQRQGGDSKQAAKVLL 249


>gi|288937410|ref|YP_003441469.1| N-6 DNA methylase [Klebsiella variicola At-22]
 gi|288892119|gb|ADC60437.1| N-6 DNA methylase [Klebsiella variicola At-22]
          Length = 554

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 73/237 (30%), Gaps = 27/237 (11%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +      +    + TP ++  +     L                + +P+ G  GFL  
Sbjct: 1   MNKHSRTQKKTLGAYYTPLNLSKVLCEWAL----------RKPNDYILEPSFGGCGFLEA 50

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           ++  +   G            G +++P          L  ++ +          +    +
Sbjct: 51  SIERLKALGCKD---TESQLFGVDIDP-----AAFHFLSEKIGNYKNIKNQFLYKDFLEV 102

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-FLMH 341
             + F    F   L NPP+       +       +  +   F       +      FL+H
Sbjct: 103 MPNNFKTSGFDVVLGNPPYVSMHNMPEKLKINCFELLKKSYFSDDTIGKNASLWAFFLLH 162

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             + L+     GGR+A VL SS L    A +    I     ++  +  +V L    F
Sbjct: 163 SLSFLK----KGGRSAWVLPSSLLHADYANA----ILNIFSQHFHLVKVVKLHERFF 211


>gi|81428910|ref|YP_395910.1| putative adenine-specific DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|15212469|gb|AAK92004.1|AF400065_2 putative modification methylase LaaG [Lactobacillus sakei]
 gi|78610552|emb|CAI55603.1| Putative adenine-specific DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 336

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 39/244 (15%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           MTP  + +L   L      A        I+T+ DP  GTG  L   MNH+ +   +    
Sbjct: 100 MTPDAIGYLVAYL------AEVFGGADQIKTVLDPVIGTGNLLATVMNHIQNLTGNK--- 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G + +     +      ++ L++      +      +               ++
Sbjct: 151 --LQGFGVDNDDSLLELAGISSELQGLDTTLFHQDAIEPLMVN----------PVDIAVA 198

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           + P G     ++ A                    S  S    + +   +    + GG   
Sbjct: 199 DLPIGFYPIDERAA-------------DFETHAASGHSYAHHLLIEQTMHYVKD-GGFGF 244

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            ++ +  L    A     ++ +W+ ++  ++ +++LP +LF        + +L  +    
Sbjct: 245 FLVPNVILETDEA----KQLVKWITKHVYLQGLLSLPVNLFKTKEGQKAILVLQKQGAGA 300

Query: 418 RRGK 421
           ++ K
Sbjct: 301 QQAK 304


>gi|170760713|ref|YP_001788411.1| modification methylase family protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169407702|gb|ACA56113.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 577

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 114/355 (32%), Gaps = 58/355 (16%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y  LI+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYELIK-----GKKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCV 256
           +          + DP+CG G  L     ++ +    + K          E +  +  +  
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 257 AGMLIRRLESDPRRD-------LSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWE 306
             +    +++   +        L+    + +   KD         F   + NPP+     
Sbjct: 137 NNLYGFDIDTIAIKILTIDLFCLTGYYNENNFKKKDFLMEDINNNFDIYIGNPPYVGH-- 194

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +V+KE+      ++G       D S  F ++  N      N   +   + S   + 
Sbjct: 195 ---KSVDKEYSVLLKEKYGYIYKDKGDISYCFFINALNY----SNINSKITFITSRYFME 247

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTEE--- 417
           +    +    +R++L EN  I  I+      F+         I   +  +    + E   
Sbjct: 248 SKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRNISNEVEI 298

Query: 418 ----RRGKV---QLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSREN 461
               R  KV      N  D +        + +    ++ DD  R I++   ++ N
Sbjct: 299 IKPCRYEKVKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDGSRDIINKIENKTN 353


>gi|297526451|ref|YP_003668475.1| N-6 DNA methylase [Staphylothermus hellenicus DSM 12710]
 gi|297255367|gb|ADI31576.1| N-6 DNA methylase [Staphylothermus hellenicus DSM 12710]
          Length = 384

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 30/219 (13%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM--HLANKL 346
            K+F   + NPPF K   K+     K++    +        K+     + +    +   +
Sbjct: 89  EKKFDLIIGNPPFTKYNIKESYFYPKKYFQSPIHPRKYLPRKLLKKEKIRIENAFILKSI 148

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---- 402
           +   +       VL +S    G+      E ++ + EN   + I+     ++        
Sbjct: 149 KHLKDKNSTIGFVLPASFFIEGKN----LETKKVIAENF--KTII-----VYQNEGKMVD 197

Query: 403 --IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             I     I +N K  E   K+ LI   +    ++    K +++ D+   +    Y  R+
Sbjct: 198 EPIPCVFAIFTNIKEFE--NKILLIYENNEKKVVKEVLDKEKLLTDEIIPK---TYFYRK 252

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           N       D +        + +P+R      K  ++   
Sbjct: 253 NN------DLKGIPLSEFLLDKPVRYKKSFTKYNVSAAN 285


>gi|256840308|ref|ZP_05545816.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737580|gb|EEU50906.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1035

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDTVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYDYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|68248686|ref|YP_247798.1| type I restriction enzyme M subunit [Haemophilus influenzae
           86-028NP]
 gi|68056885|gb|AAX87138.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae 86-028NP]
 gi|301168729|emb|CBW28320.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae 10810]
          Length = 253

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I    +      + +++  L         +    + TP  + HL  A+ L    +L 
Sbjct: 71  FNIIVEALEHKTYDFLGSVFMSL-----DLGDQYKAQYFTPSHIAHLMAAVTLSDCHSLI 125

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K+   +  TL +PTCG+G  + +A N++ +          +    ++L+     +C   M
Sbjct: 126 KKRGFL--TLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTAALMCYIQM 181

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +  +  +     +   +    L     
Sbjct: 182 TLLHIPGEVIIGNTLKDEVNYHLYTPAH 209


>gi|223986310|ref|ZP_03636321.1| hypothetical protein HOLDEFILI_03631 [Holdemania filiformis DSM
           12042]
 gi|223961718|gb|EEF66219.1| hypothetical protein HOLDEFILI_03631 [Holdemania filiformis DSM
           12042]
          Length = 105

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMS 156
           +     I   +   K +      +  + +     +L  +   F + I +        ++ 
Sbjct: 18  DEAMEAIEKENTTLKGVLPKNYGTPDLDK----TVLGDVVDLFTNKIHMDGTDHDMDLLG 73

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             YE+ I  F ++  +    F TP  +V L 
Sbjct: 74  RTYEYCIAEFAAKEGKDGGGFYTPSSIVKLL 104


>gi|218261238|ref|ZP_03476114.1| hypothetical protein PRABACTJOHN_01778 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224168|gb|EEC96818.1| hypothetical protein PRABACTJOHN_01778 [Parabacteroides johnsonii
           DSM 18315]
          Length = 852

 Score = 49.8 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|306833660|ref|ZP_07466787.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
 gi|304424430|gb|EFM27569.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
          Length = 2274

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 51/220 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              +        + DP+ GTG F       + +             +G EL+  T A+  
Sbjct: 694 DKLERDGFTGGKILDPSMGTGNFFAAMPKQLREKSE---------LYGVELDTITGAIAK 744

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  +   ++              F    F   +SN PF      D        
Sbjct: 745 ------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPFANIRIAD-------- 783

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 R+        D   +   +   K     + GG+ AI+ S+  +           
Sbjct: 784 -----NRY--------DKPYMIHDYFVKKSLDLVHDGGQVAIISSTGTMDKRT-----EN 825

Query: 377 IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           I + + E       V LP   F     T + T +      
Sbjct: 826 ILQDIRETTEFLGGVRLPDSAFKAIAGTTVTTDMLFFQKH 865


>gi|295110781|emb|CBL24734.1| DNA methylase [Ruminococcus obeum A2-162]
          Length = 2686

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 70/253 (27%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +     F T   VV      L +               + +P+CG G F+   
Sbjct: 1138 EEYSAARASTLNAFYTSPTVVKAMYEALGNMGLKQGN--------ILEPSCGVGNFM--- 1186

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G   +       +G EL+P +  +               +   KN        
Sbjct: 1187 -------GLLPESMSAANMYGVELDPVSGQIAK-------------QLYQKNRIAVQGFE 1226

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  +    F   + N PFG     D+             R+            +   +  
Sbjct: 1227 ETSYPDSFFDCVIGNVPFGAYQVSDRK----------YDRYH----------FMIHDYFI 1266

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
             K       GG  A+V SS  +          E+R++      +   + LP + F     
Sbjct: 1267 AKSLDMVRPGGVVAVVTSSGTMDKQNP-----EVRQYFANRADLLGAIRLPNNAFQRNAN 1321

Query: 401  TNIATYLWILSNR 413
            T++   +     R
Sbjct: 1322 TSVVADILFFQKR 1334


>gi|291541463|emb|CBL14573.1| DNA methylase [Ruminococcus bromii L2-63]
          Length = 2058

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 67/270 (24%), Gaps = 77/270 (28%)

Query: 160  EHLIRRFGSEVSEGAED--------FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            E     + S   E            F TP  V+                        + +
Sbjct: 1065 EEFKELYASLSPEEYRAAMESTLTAFYTPPVVIKAM--------YDALDRLGFSQGNILE 1116

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLES 266
            P+CGTG F           G   +       HG E++  T  +       A + I   E 
Sbjct: 1117 PSCGTGNFF----------GLLPESMQNSKLHGVEIDSLTGRIAKQLYQKANIAIEGFE- 1165

Query: 267  DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                             K       F   L N PF                         
Sbjct: 1166 -----------------KTNLPDNHFDVVLGNVPF------------------------- 1183

Query: 327  GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            G  +++D        L +            A  +       G       E+R+++ +   
Sbjct: 1184 GEIRVNDSRYNAQKFLIHDYFFAKALDKVRAGSVVMFITSKGTMDKASPEVRKYIAQRAE 1243

Query: 387  IEAIVALPTDLF---FRTNIATYLWILSNR 413
            +   + LP + F     T + + + IL  R
Sbjct: 1244 LLGAIRLPDNTFKANAGTEVTSDILILQKR 1273


>gi|254166687|ref|ZP_04873541.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|289596069|ref|YP_003482765.1| N-6 DNA methylase [Aciduliprofundum boonei T469]
 gi|197624297|gb|EDY36858.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|289533856|gb|ADD08203.1| N-6 DNA methylase [Aciduliprofundum boonei T469]
          Length = 967

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 112/365 (30%), Gaps = 68/365 (18%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            + Y+    F  ++  P+       + I+   I     E+       + P+++  +  A 
Sbjct: 246 EINYRPIYKFDILDTIPEHYIKDTFTLIWNLKIENIRFELPGRLFHELMPKEIKKMLAAF 305

Query: 191 LLDPDDALFKES---PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----VPH 243
              P  A              ++DP CG+G  LT A     +  +  + P  L      +
Sbjct: 306 YTRPIAAEILSCVTINNAEEVVFDPACGSGTILTAAYRRKRELWNKQEDPHKLFCEEQIY 365

Query: 244 GQEL-----EPETHAVC---------VAGMLIRR-----LESDPRRDLSKNIQQGSTLSK 284
           G ++        T  +             +         L    +  LSK  + G  +S 
Sbjct: 366 GTDIMPFAVNLTTANLASLNPKITIEKMNIARADSLKLELNVPIKNGLSKLERYGIPISS 425

Query: 285 DLFTG-----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           ++ +                  L NPPF K     K  ++ E     +G           
Sbjct: 426 NIKSKNMQGDEYDMVLDLMDVVLMNPPFTKIERGVKKYIKIERFKSRVG----------- 474

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +    H     ++     G    V+  + L    +     ++R+ + E  L   ++  
Sbjct: 475 GEIGLWGHFIALADMILKPNGMFGGVIPINILRGRES----EKVRKIVFEEWLPLYVIK- 529

Query: 394 PTDLFFRTNIAT----YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            + + +  + ++     L I    K++    KV+ +             K    ++    
Sbjct: 530 -STMNYGFSESSEYRDILIIAKKTKSKPINHKVKFV----------LIKKDLNSLSFKDV 578

Query: 450 RQILD 454
           ++I D
Sbjct: 579 KRICD 583


>gi|308274109|emb|CBX30708.1| Type IIS restriction enzyme Eco57I [uncultured Desulfobacterium
           sp.]
          Length = 995

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/447 (15%), Positives = 130/447 (29%), Gaps = 91/447 (20%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
            L    E  ++   E Y      +    + +  +    Y      L      N  +    
Sbjct: 195 FLSQINEWRKALGAEIYKHEPKIDEQQLNDIVQS----YINRIIFLRVCEDRNLEDYQTL 250

Query: 103 YIASFSDNAKAIFEDFDFSST--IARLEKAGLLYKICKNFSGIEL-------------HP 147
              + S++ KA+ + F+ +     + L    L  KI +N S +                 
Sbjct: 251 LKFANSNDFKALIKKFEQADKRYNSGLFNQLLKDKIVENISSVFWTIIKQLYYPESPYSF 310

Query: 148 DTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
                 V+ +IYE  +                  +   +   TP  ++       +    
Sbjct: 311 SVFSSDVLGSIYEIFLSEKLTVQSVSVILVKKPENVDRDIITTPTFIISDILRNTVLKKC 370

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------- 241
               +   +     D +CG+G FL +    + D    H +                    
Sbjct: 371 EGKSDKEILKLKFADISCGSGAFLLELFQLLNDILIDHYLKNDKTKLIQTNINTFKLPFE 430

Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRR----------DLSKNIQQGSTL 282
                     +G + +         G+L++ LE +             DLS+NI  G++L
Sbjct: 431 IKRQLLLNCIYGVDKDYNAVEAAKFGLLLKLLEGEDVNSTNKTKPVLPDLSQNIFFGNSL 490

Query: 283 SKDL---------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                              F+  RF   + NPP+ K    +        +          
Sbjct: 491 LNPKQVTNKKDQVIINPFDFSKLRFDVIVGNPPYMKS---EDMKNITPLELPLYKTNFDS 547

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K  D   LFL    N L    +  G    ++ S     G       ++R  L + + +
Sbjct: 548 AYKQFDKYFLFLEQGINLL----DDDGILGYIVPSKFTKVGAG----KKLRELLADKEYL 599

Query: 388 EAIVALPTD-LFFRTNIATYLWILSNR 413
            +IV+   + +F      T L IL+ +
Sbjct: 600 HSIVSFGANQVFTDKTTYTCLLILNKK 626


>gi|281423758|ref|ZP_06254671.1| putative DNA methylase [Prevotella oris F0302]
 gi|281402160|gb|EFB32991.1| putative DNA methylase [Prevotella oris F0302]
          Length = 1556

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 52/253 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  D       
Sbjct: 105 FYTPKEITDTLADMLADYSVRPA--------RMLEPSAGVGVFVDSVLRHSPDADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDHK------MRTCGFEKIEKPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQNAIHNYFFLKGLDTVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN- 412
           A + S   L      S ++ +R  L     + + V LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVLQKH 297

Query: 413 -RKTEERRGKVQL 424
             K E  + +  +
Sbjct: 298 LNKKEMSQDERLM 310


>gi|298482759|ref|ZP_07000943.1| DNA methylase [Bacteroides sp. D22]
 gi|298271222|gb|EFI12799.1| DNA methylase [Bacteroides sp. D22]
          Length = 1346

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 104/333 (31%), Gaps = 53/333 (15%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F  +   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSGNGLTMRSFLEPSAGIGGFLPVAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       V+G+++  L  +     +       T+ +  F   +F    
Sbjct: 143 -SGTYDYAIEKD------LVSGLILSLLHENTITRTTGFE----TIDRQDFEHTKFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    E   K G   +           +     +   K     N GG  
Sbjct: 192 SNIPFGNFRVFDA---ELWKKGGMYEQ----------ATKTIHNYFFVKAVELLNEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S           G   +R +L+ +  + + V LP  LF +T+   + + L I    
Sbjct: 239 AFVTSRGI----ADTPGNKFVREYLVNHADLISAVRLPDMLFMQTSGIEVGSDLLIFQK- 293

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                  K  L     L+  +  E         +   +I            SR++  +  
Sbjct: 294 ----HTQKAVLSQREQLFLQVSREKADTTGTMTEHANKIF-TLPKTTLATGSRIVQNQYG 348

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
            Y R    +    +       L +L+    +RK
Sbjct: 349 KYVRKYQWQGDENAMSQYLAALLKLDFGRYFRK 381


>gi|281420196|ref|ZP_06251195.1| hypothetical protein PREVCOP_04065 [Prevotella copri DSM 18205]
 gi|281405691|gb|EFB36371.1| hypothetical protein PREVCOP_04065 [Prevotella copri DSM 18205]
          Length = 1066

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 84/294 (28%), Gaps = 41/294 (13%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           + +S  +++       +     S I L    +       +YE  +  +  +       + 
Sbjct: 294 ELNSPFSKIGIWYDNTRRM--LSCIRLSEHQITTPNFHELYESFLAAYDGKTRNDFGAWY 351

Query: 179 TPRDVVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           TP  +   A   +  + P     +        + DP CGTG F+   +N +        +
Sbjct: 352 TPMPLAEYAAKFVDAILPSVLPGENVRDKAIKVVDPCCGTGTFIEAVLNKMP-------L 404

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+ P  +A+    + +  +  +    +        +  K      R    +
Sbjct: 405 LEGSKIIGFEILPVPYALANYRISMLDVTDNTDIVVVLTNTLSDSTFKQTHIEGRASDVV 464

Query: 297 S-----------------------NPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKIS 332
           S                       NPP     +  ++  +  +  N    +   G     
Sbjct: 465 STFFLNEQRKAKKLSEPPLTIIIGNPPCSDSVDINNEGKIIAKLMNDFRPKVRKGRSNKQ 524

Query: 333 D--GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
               + +         +   +     A+VL S+              R++L+E+
Sbjct: 525 KQLANEMTKFLRWCLFKAEKSRPSIFALVLPSTF----AQNESFVNARKYLVEH 574


>gi|225155242|ref|ZP_03723736.1| helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224803997|gb|EEG22226.1| helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 1642

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 65/213 (30%), Gaps = 50/213 (23%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + +P CG G F       +                G E++P T  +          +  
Sbjct: 139 RVLEPACGLGHFFGLMPETMRSRSE---------LTGIEIDPLTARLAS--------QLY 181

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           PR D+     + ++L  +      F   +SN PFG                     + P 
Sbjct: 182 PRADIRATAFEEASLRTN-----SFDVAISNVPFGD--------------------YAPF 216

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            PK++ G      +           GG    + S   +   ++G     +R  L E   +
Sbjct: 217 DPKLNKGKYRIHDYFFIAALERVRPGGFVVFITSRGTMDKRQSG-----LRELLAEGADL 271

Query: 388 EAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              + LP D F     T + T +  L  R   E
Sbjct: 272 VGAIRLPNDAFKQNANTEVTTDIVFLRKRAPGE 304


>gi|60681789|ref|YP_211933.1| putative type I restriction modification system-like protein
           [Bacteroides fragilis NCTC 9343]
 gi|60493223|emb|CAH08005.1| putative type I restriction modification system related protein
           [Bacteroides fragilis NCTC 9343]
          Length = 248

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 138 KNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           + F+ + +  D  P      + ++  +       +     F TP  V  L   L+  P  
Sbjct: 63  QAFAALVMQMDRQPLVDPFGDYFQEFL------SNAQNGQFFTPFGVCELMNQLITAPK- 115

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +  +     R + DP CG+G  L  A           +    L   G ++      + +
Sbjct: 116 -VSDQPKQGDRRVLDPACGSGRLLLSAA----------QKDRALTFVGIDISYTCCLMTI 164

Query: 257 AGMLIRRLESDPRRDLSKNIQQGS 280
             + +  L  +     +   Q   
Sbjct: 165 INLCLNSLNGEVLHMNALTDQYWH 188


>gi|332665172|ref|YP_004447960.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333986|gb|AEE51087.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 621

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 106/334 (31%), Gaps = 34/334 (10%)

Query: 97  RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            N + +Y+ S+S +     + I   F +S  +       L   I +       +      
Sbjct: 2   NNAIFTYLKSYSTDPFKVDRLIISAFLYSLDLQNTGNQFLQQYIIQKEDDDNQNLKEFLS 61

Query: 153 RVMSNIYEHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
             +    E LIR F      E         TP+++         +  D L          
Sbjct: 62  IHLFTEIEELIRVFEFVISPEDKILTGAIYTPKNIRDYIFEQCFEHTDDLNNV------K 115

Query: 209 LYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           + DP CG GGFL  A   + D  G  ++   +   +G +++          + +  L   
Sbjct: 116 ICDPACGCGGFLYTAAKTIHDQTGKSYQTIFVDNIYGLDVQMYAINRSKLLLTLLGLTEG 175

Query: 268 PRRDLSKNIQQGSTLSKDL----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
              D   N+  G+ L+          + F   + NPP+     ++ D   KE        
Sbjct: 176 ENADFEFNLDLGNALNFKWAGHYPNFQGFDIVVGNPPY--VCSRNIDDESKELIFD---- 229

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +        D  + F       L       G    +  ++   +         +R++  +
Sbjct: 230 WKVSESGHPDLYIPFFQIGIENLRPQ----GVLGFITMNTFFKSVNG----RALRQYFED 281

Query: 384 NDLIEAIVALPTD-LFFRTNIATYLWILSNRKTE 416
             L   I+    + +F   +  T + I+   +++
Sbjct: 282 QALALKILDFGGNQVFQNKSTYTCICIIRKCESQ 315


>gi|291535497|emb|CBL08609.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2587

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 70/270 (25%), Gaps = 77/270 (28%)

Query: 160  EHLIRRFGSEVSEGAED--------FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            E     + S   E            F TP  V+                        + +
Sbjct: 1065 EEFKELYASLSPEEYRAAMESTLTAFYTPPVVIKAM--------YDALDRLGFSQGNILE 1116

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLES 266
            P+CGTG F           G   +       HG E++  T  +       A + I   E 
Sbjct: 1117 PSCGTGNFF----------GLLPESMQNSKLHGVEIDSLTGRLAKQLYPKANIAIEGFE- 1165

Query: 267  DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                             K       F   L N PFG+    D                  
Sbjct: 1166 -----------------KTNLPDDHFDVVLGNVPFGEIRVNDS----------------- 1191

Query: 327  GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
               + +    L   +   K       GG    + S   +          E+R+++ +   
Sbjct: 1192 ---RYNAQKFLIHDYFFAKALDKVRAGGVVMFITSKGTMDKASP-----EVRKYIAQRAE 1243

Query: 387  IEAIVALPTDLF---FRTNIATYLWILSNR 413
            +   + LP + F     T + + + IL  R
Sbjct: 1244 LLGAIRLPDNTFKANAGTEVTSDILILQKR 1273


>gi|237718319|ref|ZP_04548800.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452503|gb|EEO58294.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1056

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|302345456|ref|YP_003813809.1| hypothetical protein HMPREF0659_A5726 [Prevotella melaninogenica
           ATCC 25845]
 gi|302150035|gb|ADK96297.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 50

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 625 DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           D+   ++G E  F + FY Y+P R L  I A++K 
Sbjct: 2   DRSKDKIGCEFPFTKLFYVYRPMRDLDAILADIKR 36


>gi|224543141|ref|ZP_03683680.1| hypothetical protein CATMIT_02341 [Catenibacterium mitsuokai DSM
            15897]
 gi|224523928|gb|EEF93033.1| hypothetical protein CATMIT_02341 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1463

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 64/245 (26%), Gaps = 69/245 (28%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP  V+      L                 + +P+CGTG F           G     
Sbjct: 1184 FYTPPVVIKAMYEAL--------DRLGFSEGNILEPSCGTGNFF----------GLLPDS 1225

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  HG E++  T  +       A + I   E                  K       
Sbjct: 1226 MAKSKLHGVEIDSLTGRIAKQLYQKANIAIEGFE------------------KTKLPDDH 1267

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   L N PFG                     F     + +    L       K      
Sbjct: 1268 FDVVLGNVPFGD--------------------FKVNDSRYNAQKFLIHDFFFAKALDKVR 1307

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG    + S   +          E+R+++ +   +   + LP + F     T + + + 
Sbjct: 1308 AGGVVMFITSKGTMDKASP-----EVRKYIAQRAELLGAIRLPDNTFRANAGTEVTSDIL 1362

Query: 409  ILSNR 413
            IL  R
Sbjct: 1363 ILQKR 1367


>gi|325833145|ref|ZP_08165693.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
 gi|325485701|gb|EGC88168.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
          Length = 1860

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 76/253 (30%), Gaps = 58/253 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R +          F TP +V       L+         +     ++ DP  GTG F   A
Sbjct: 114 REYAKARESTLTAFYTPPEVAKAIWDYLVM--------AGFAAGSVLDPAAGTGRF---A 162

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               A+     K+  +      EL+P +  +           + P   +     + +TL+
Sbjct: 163 DAMPAELAGRAKLTMV------ELDPVSALIAK--------HAHPGMAVQCKGYEATTLA 208

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D      F   ++N PFG+                   R   G        ML   +  
Sbjct: 209 DD-----SFDVAVTNVPFGQ--------------FSVYDRRHAGEG------MLVHDYFF 243

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
            K       GG  A + +S  L    + +     RR L     +     LP   F     
Sbjct: 244 AKALDHVRPGGLVAFITASGTLDKKTSAA-----RRELATRAELVCAARLPDSTFQASAG 298

Query: 401 TNIATYLWILSNR 413
           T + + + +L  R
Sbjct: 299 TTVTSDVVVLKKR 311


>gi|270692011|ref|ZP_06222905.1| type I restriction-modification system DNA methylase [Haemophilus
           influenzae HK1212]
 gi|270316087|gb|EFA28100.1| type I restriction-modification system DNA methylase [Haemophilus
           influenzae HK1212]
          Length = 193

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT-WRKLSPLHQSFWLDILKPM- 522
           S++ D + FGY ++ + RP R S       +A L  D   +  +  L++ +   +     
Sbjct: 25  SQIFDNQDFGYYKVTIERPDRRSAQFTVENIASLRFDKALFEPMQYLYRQYGGQVYNAGF 84

Query: 523 --MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
               +     W E+        N+AK L VK  +     F  A    +   +   D   +
Sbjct: 85  LTQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQTASKLLEHFGEQQFDDFNQ 144

Query: 581 WIPDTNLT-EYENVPY 595
           +        + E +P 
Sbjct: 145 FKQAVECRLKTEKIPL 160


>gi|328948587|ref|YP_004365924.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328448911|gb|AEB14627.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2901

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 109/384 (28%), Gaps = 64/384 (16%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
                 LE  +              +D E+   V   +F        S++     R N+ 
Sbjct: 583 YYASTILEHRKGTGLSMQGDVPAWTLDAETMDYVHDITFMWV--DRHSSVQQKEERENVR 640

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S + S         +D     T + L K     +        E+  D   D+ +   YE 
Sbjct: 641 SNLQS---------QDISAPRTKSDLRKLREQCREILKKPDSEITED---DKKILAQYEG 688

Query: 162 L--IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
              +       SE    F TP +++     L+               +T+ +P+ G G  
Sbjct: 689 GGGLNEDERTNSEVLNAFYTPDNLIEKVWELVDAYAPDA--------KTVLEPSAGVG-- 738

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQ 278
                             P       EL+  +  +     ++    +        + +  
Sbjct: 739 ------------KFANNRPDNKFTMHELDETSARI---NKILHPEADVIQGAFQKQFLDD 783

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G    K  +   +    + NPP+GK  +K K   E    +     F              
Sbjct: 784 GERFLKIGYEQSKHDVVIGNPPYGKYNDKYKGLGEGREFDRYEEYF-------------- 829

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +A  L+   +     A V+ S  L            ++ +     I     LP   F
Sbjct: 830 ---IARGLDALKDEKSVLAFVVPSGFLSTADDRQ-----KKVIASKGEILDAYRLPEGTF 881

Query: 399 FRTNIATYLWILSNRKTEERRGKV 422
             T + T + I+  ++  + R  +
Sbjct: 882 STTEVGTDILIMRKKENLDDRENI 905


>gi|308271231|emb|CBX27840.1| hypothetical protein N47_C18980 [uncultured Desulfobacterium sp.]
          Length = 252

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 89/268 (33%), Gaps = 45/268 (16%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  V  L    +L+ +            T+ DP  G G F  + +      
Sbjct: 15  RKDYGQFFTPSSVARLMVQWVLNDNPT----------TVLDPAFGLGIFYDEVLK----- 59

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K    L   G E++             +++      +L+K+  + +          
Sbjct: 60  ---TKPSQQLQFIGYEID-------------KKIIGYLNSELNKSNLKINNCDYLEANAG 103

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+ +     K          ++G+   G   IS   +L  ++         
Sbjct: 104 SFDGIICNPPYMRFQNFLKRHSVLPKIEKQIGKRLVGYSNISSVFLLKALNEL------- 156

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYLW 408
           N  G  A ++       G       E++R LL+N L++ I+      ++F        + 
Sbjct: 157 NDNGNLAFIMPFEFFNTGYG----KEVKRSLLKNHLLKQIIIFSNEKEIFPDATTTVCVL 212

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN 436
            L  +  +E   K+  I A D  + + N
Sbjct: 213 -LCKKDGKEDDIKITQIKAEDEISQLSN 239


>gi|240145259|ref|ZP_04743860.1| superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82]
 gi|257202613|gb|EEV00898.1| superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82]
          Length = 1278

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 70/270 (25%), Gaps = 77/270 (28%)

Query: 160 EHLIRRFGSEVSEGAED--------FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           E     + S   E            F TP  V+                        + +
Sbjct: 453 EEFKELYASLSPEEYRAAMESTLTAFYTPPVVIKAM--------YDALDRLGFSQGNILE 504

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLES 266
           P+CGTG F           G   +       HG E++  T  +       A + I   E 
Sbjct: 505 PSCGTGNFF----------GLLPESMQNSKLHGVEIDSLTGRIAKQLYQKANIAIEGFE- 553

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                            K       F   L N PFG+    D                  
Sbjct: 554 -----------------KTNLPDDHFDVVLGNVPFGEIRVNDS----------------- 579

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + +    L   +   K       GG    + S   +          E+R+++ +   
Sbjct: 580 ---RYNAQKFLIHDYFFAKALDKVRAGGVVMFITSKGTMDKASP-----EVRKYIAQRAE 631

Query: 387 IEAIVALPTDLF---FRTNIATYLWILSNR 413
           +   + LP + F     T + + + IL  R
Sbjct: 632 LLGAIRLPDNTFKANAGTEVTSDILILQKR 661


>gi|169835034|ref|YP_001715745.1| hypothetical protein CLK_A0118 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409141|gb|ACA57551.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 972

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 88/547 (16%), Positives = 173/547 (31%), Gaps = 74/547 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGS 93
           IL    +R L          +   Y  F G   +  E+ +K+A       S +S      
Sbjct: 182 ILRLIFIRFLIDR------GIDIGYDGFNGDIKESQEALLKLANNKRKLYSFFSYLKNKF 235

Query: 94  TNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                 LE   Y  + +D    + +   F S    +E   L +    +F+ I +      
Sbjct: 236 NGNLFELEDEVYDEALNDEVFELLKC--FLSGKQEMESGQLSFLPLYDFNIIPI------ 287

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++SNIYE L+     +  +    F TP  +           +      +      + D
Sbjct: 288 -ELISNIYEVLLGEKAQDDDKA---FYTPEYLADYIVK-----ESLGTFLTKNSQCKVLD 338

Query: 212 PTCGTGGFLTDAMNHVA----DCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLI 261
           P+CG+G FL +++  +     D   + K    L        +G +  PE   V +  + +
Sbjct: 339 PSCGSGIFLVESLQLIISKNVDANGYIKDNDKLCQLIESNIYGVDSNPEAIDVTIFSLYL 398

Query: 262 RRLESDPRRDLS----KNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDK 309
              +    + L      N++  +    D F  +        +F + L NPP+G   E   
Sbjct: 399 TLFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNPPWGSVKEGLH 458

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                E+K  +         +IS            K++   N      +++ S   +N +
Sbjct: 459 SQYCDENKIPQY------RQEISRS-------FIAKVKEYSNEDTICCLIVPSKLFYNQK 505

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTD---LFFRTNIATYLWILSNRKTEERRGKVQLIN 426
             + E   R+ LL    I  IV L +    +F + +    + +  N        K+  + 
Sbjct: 506 KPAIE--FRKLLLLKCKILQIVELSSVRSLIFKKADAPAAILMFKNSTENCLSHKMLHL- 562

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
              L  ++  +      I     + I    + R +  +   +         I ++  L+ 
Sbjct: 563 --SLKPNMFFKIYHVIAIEKTDIKNIQQDILYRYDWAWKTCV---YGNSWDIDIITMLKR 617

Query: 487 SF--ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
            F  I D     +L+        +  + +        +        +  S         +
Sbjct: 618 KFPKIKDVINENKLKTGAGITDTNGKYDAKDYIGKNMIESTAIDTLYFNSSNSSIFNKRK 677

Query: 545 AKTLKVK 551
              L  K
Sbjct: 678 IYRLGKK 684


>gi|253578091|ref|ZP_04855363.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850409|gb|EES78367.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39BFAA]
          Length = 2587

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 70/270 (25%), Gaps = 77/270 (28%)

Query: 160  EHLIRRFGSEVSEGAED--------FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            E     + S   E            F TP  V+                        + +
Sbjct: 1065 EEFKELYASLSPEEYRAAMESTLTAFYTPPVVIKAM--------YDALDRLGFSQGNILE 1116

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLES 266
            P+CGTG F           G   +       HG E++  T  +       A + I   E 
Sbjct: 1117 PSCGTGNFF----------GLLPESMQNSKLHGVEIDSLTGRIAKQLYQKANIAIEGFE- 1165

Query: 267  DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                             K       F   L N PFG+    D                  
Sbjct: 1166 -----------------KTNLPDDHFDVVLGNVPFGEIRVNDS----------------- 1191

Query: 327  GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
               + +    L   +   K       GG    + S   +          E+R+++ +   
Sbjct: 1192 ---RYNAQKFLIHDYFFAKALDKVRAGGVVMFITSKGTMDKASP-----EVRKYIAQRAE 1243

Query: 387  IEAIVALPTDLF---FRTNIATYLWILSNR 413
            +   + LP + F     T + + + IL  R
Sbjct: 1244 LLGAIRLPDNTFKANAGTEVTSDILILQKR 1273


>gi|237726538|ref|ZP_04557019.1| DNA methylase BmhA [Bacteroides sp. D4]
 gi|229435064|gb|EEO45141.1| DNA methylase BmhA [Bacteroides dorei 5_1_36/D4]
          Length = 1062

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|83649641|ref|YP_438076.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83637684|gb|ABC33651.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 1000

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 39  TLLRRLECAL---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GST 94
              R L       E    ++ +K  +        ++         +    ++   L    
Sbjct: 189 LFFRFLVDRNIVKETDLPSISQKAESLSELFSTPQAMEDT---CLWLDKTFNGDLLSLED 245

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N    +  +I    +       +    +   +L+   L +   K           VP  V
Sbjct: 246 NGYQRIFRHIDDNIEKVCWSLSNIQHHAANGQLQ---LDWGWIK--------FQHVPVDV 294

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE    +F  +++       TPR +      ++++   +  K +      + DP+ 
Sbjct: 295 LSQVYEDFAHQFVPDLARKTSVHFTPRQI----AEVVIEGAFSAVKSALPHEARVLDPSA 350

Query: 215 GTGGFLTDAMNH-VADCGSHHKIPPILVPHGQ 245
           G G FL  A+   VA+   H  + P      Q
Sbjct: 351 GAGVFLVLALRRLVAEHWLHTGVRPTRQVIRQ 382


>gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
            13032]
 gi|41223062|emb|CAF19007.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1646

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 102/374 (27%), Gaps = 52/374 (13%)

Query: 43   RLECALEPTRSAVREKYLAF--------GGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
            R++  L+     ++E++  F          S  D E+   ++ +        +L    S 
Sbjct: 739  RIKALLDNASPTIKEEFERFVEGLRGNLNESISDDEAISMLSQHLITAPVFDALFAESSF 798

Query: 95   NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
              +N +   +   +D         + +S   +LEK     +        E+        V
Sbjct: 799  AKQNPVSQVMQRMAD----ALNSAELNSETEKLEKFYDSVR----IRAAEVSSAAGKQAV 850

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPT 213
            + ++YE   ++   + SE      TP ++V        D     F          + DP 
Sbjct: 851  IKDLYERFFKKAFKKQSEALGIVYTPVEIVDFILRAADDVSKKHFGRGLSDKDVHVLDPF 910

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----------LIR 262
             GTG F+   +                  H  E+    + V    +            +R
Sbjct: 911  TGTGTFMVRLLQSGLIKPEDLARKYANELHATEIMLLAYYVAAVNIETTYFGLEGERALR 970

Query: 263  RLESDPRRDLSKNIQQGSTLSKDLFTGK-------------------RFHYCLSNPPF-- 301
              E  P  +    I  G T        K                        + NPP+  
Sbjct: 971  NGEDAPVYEPFDGIVLGDTFQMYEDDDKLDLDVFTANNDRMERQRLTPVQVIVGNPPYSV 1030

Query: 302  GKKWEKDKDAVEKE---HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            G+    D +A  K     +  E            +      +          +  G  A 
Sbjct: 1031 GQSSANDNNANLKYPTLDRRIEDSYAKYSTATNKNSLYDSYLRAFRWATDRIHTQGVVAF 1090

Query: 359  VLSSSPLFNGRAGS 372
            V ++  +    A  
Sbjct: 1091 VSNNGWVDGNTADG 1104


>gi|163869203|ref|YP_001610455.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161018902|emb|CAK02460.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1652

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/444 (12%), Positives = 117/444 (26%), Gaps = 58/444 (13%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
                 +        I     +++          + +   G   TR N        S   +
Sbjct: 758  DRFLAELRDDLNDTITEADAIEMLAQHIITRPVFQVLFEGYQFTREN------PVSRAMQ 811

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             + +  D ++     +     Y   K  +     P      ++  +Y+   R       E
Sbjct: 812  RMLDVLDEANLDKESKDLEKFYASVKLRASGITDPKAKQRLIV-ELYDKFFRYAFPRTVE 870

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + D     F ++       + DP  GTG F+T  +       
Sbjct: 871  KLGIVYTPVEVVDFILNSVNDILKNEFGQTLGSSGVHIMDPFTGTGTFITRLLQSGLIKP 930

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLES------------------DPRRD 271
               K       H  E+    + +    +      L                    +  +D
Sbjct: 931  EEMKHKFCHEIHANEIVLLAYYIAAINIETTYHGLMGGGYVPFEGICLTDTFQLYEQDKD 990

Query: 272  LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            L  ++   ++  +           + NPP+  G+K E D        K     R      
Sbjct: 991  LISDLLMANSTRRSRQKELDIRVIVGNPPYSSGQKSENDNAQNIDYPKLDRRIRETYAAQ 1050

Query: 330  KIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---------- 376
              +   +G     +             G    V ++  +          E          
Sbjct: 1051 SKASNVNGLYDSYIRAMRWATDRIKSSGVIGFVTNAGFINGYSMNGLRKELNEEFSGIYI 1110

Query: 377  ------IRRWLLENDLIEAIVALPTDLFFR---TNIATYLWILSNRKTEERRGKVQLINA 427
                  IR+ ++             ++F     T IA  L++           K+   + 
Sbjct: 1111 LNLRGDIRKNMMSKGR----AREGQNVFGSGSMTGIAVTLFV--KNPNVFEPCKIYYYDI 1164

Query: 428  TDLWTSIRNEGKKRRIINDDQRRQ 451
             D  T+     + +R+ + D  ++
Sbjct: 1165 GDNLTTKEKLSELQRLGSVDGIKR 1188


>gi|291540174|emb|CBL13285.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2510

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 68/234 (29%), Gaps = 61/234 (26%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            +    ++   +       + +P+ G G F           GS  +       +G EL+  
Sbjct: 951  IAMCINSALVQFGFRGGNVLEPSMGIGNFF----------GSMPETVHEAKLYGVELDSI 1000

Query: 251  THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 1001 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVVGNVPF---- 1038

Query: 306  EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                         G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 1039 -------------GDYKVFDP---KYNKYNFRIHDYFLAKALDQVRPGGMVAVITTKGTL 1082

Query: 366  FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                       IR++L E   +   V LP   F     T +   +  L  R+ +
Sbjct: 1083 DKANPT-----IRKYLAERAELVGAVRLPNTAFKDNAGTEVTADILFLQKRERK 1131


>gi|193214780|ref|YP_001995979.1| BseRI endonuclease, putative [Chloroherpeton thalassium ATCC 35110]
 gi|193088257|gb|ACF13532.1| BseRI endonuclease, putative [Chloroherpeton thalassium ATCC 35110]
          Length = 1067

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 108/309 (34%), Gaps = 21/309 (6%)

Query: 45  ECALEPTRSAVREKYLAFGG-SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                      R   LA+G   + D   F+     +F     +++ +       N L++ 
Sbjct: 213 SDVQTAYNEWRRFLSLAYGNFRDSDDIFFIHTYLSAFAKLLAFTVISPQKLPDTNALQTV 272

Query: 104 IAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIY 159
           +    F ++    F + DF   IA       L  + ++ +    +     V + ++  +Y
Sbjct: 273 LNGKAFHEHNILRFVEDDFFHWIATDTHFSALKSMFRDITEKLADYDFSDVREDILKGVY 332

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + LI     E      ++ TP  +  L    L   +D+           + DP CG+G F
Sbjct: 333 QELID---IETRHALGEYYTPDWLCELVLEDLPIREDS----------KILDPACGSGSF 379

Query: 220 LTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRD--LSKNI 276
           L  A+  + +   H     +     G ++ P +  +    +L+   +S  +    ++ N+
Sbjct: 380 LRAAVQRLRNQFPHLSADQLTAQVQGIDVHPLSVQIAKTTLLVSLGKSIRKAGKPVALNV 439

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              +TL     T + F          +K++  KD  EK        RF   L   + G  
Sbjct: 440 FLANTLLLPEGTTELFGQNYHVMVDSRKYKLMKDVFEKHSLFDSAVRFSDDLALRTQGQA 499

Query: 337 LFLMHLANK 345
                + +K
Sbjct: 500 ELRHEIFSK 508


>gi|330814500|ref|YP_004362675.1| hypothetical protein bgla_4p0490 [Burkholderia gladioli BSR3]
 gi|327374492|gb|AEA65843.1| hypothetical protein bgla_4p0490 [Burkholderia gladioli BSR3]
          Length = 332

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 17/119 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y           ++ A  F TP  +  L   LL+   D            + +P
Sbjct: 114 DVLGETY-----MMMGIGNDRAGQFFTPYTISRLMAGLLIG--DGSAAIERDGFMRMQEP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE----PETHA-VCVAG---MLIRR 263
            CG GG +    + +   G ++     L     +++      T+  + +     M++  
Sbjct: 167 ACGAGGMVIATADALLSVGQNY--QQTLHATCIDIDARCVHMTYLQLSLMHIPAMIVHG 223


>gi|159186358|ref|NP_355767.2| hypothetical protein Atu4892 [Agrobacterium tumefaciens str. C58]
 gi|159141492|gb|AAK88552.2| hypothetical protein Atu4892 [Agrobacterium tumefaciens str. C58]
          Length = 697

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 88/305 (28%), Gaps = 62/305 (20%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPPI--------LVPHGQE 246
            L  +       + DP  G G FL  A   +  A   S    P              G +
Sbjct: 8   GLNAQGISAAARILDPAAGAGVFLLAAFRELVAARWRSEGHRPDTAALREILYKQVRGFD 67

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------------------- 287
           +       C  G+ +  +E DP       +         L                    
Sbjct: 68  INEAALRFCALGLYLLSIELDPNPKPVDKLHFDDLRGVVLHRPVDTTDVDRPEAKQLGSL 127

Query: 288 -------TGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGL--PKISDGSML 337
                     ++   + NPP+      +D + +  E       R G G+  P + +  +L
Sbjct: 128 GSLIGEEHDGQYDLVIGNPPWASATGLEDWNLLLTEVHKIARSRLGDGITAPPLPNA-VL 186

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA---LP 394
            L  +   +         A I+ +    F  + G G    R+ LLE   + +I+    L 
Sbjct: 187 DLPFVWRAMRWAKPD---AQIIFALHARFLFQQGDGMPLARQSLLEAMDVTSIINGSELR 243

Query: 395 -TDLFFRTNIATYLWILSNRKTEERRG---------------KVQLINATDLWTSIRNEG 438
            T ++   +    L    NR      G                V  ++AT+ +     + 
Sbjct: 244 QTKVWPSISAPFCLLFAVNRPAHTASGFRMLTPRYEKGFNNAGVMRVDATNAYVVRPQDL 303

Query: 439 KKRRI 443
           ++R  
Sbjct: 304 RERPE 308


>gi|163756402|ref|ZP_02163516.1| hypothetical protein KAOT1_02099 [Kordia algicida OT-1]
 gi|161323754|gb|EDP95089.1| hypothetical protein KAOT1_02099 [Kordia algicida OT-1]
          Length = 880

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 44/231 (19%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F  +        + P  +  +    L   +D           +++DPT GTG  L  A
Sbjct: 618 RSFVDDKQRFEHSHILPLPIAMMIARYLQMNEDT----------SIFDPTAGTGNLLVGA 667

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V       K+                             S    D SK  +   T  
Sbjct: 668 NKRVTHANEISKLKRQ--------------------------SLKSLDFSKITKYDPTSP 701

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 K F   + NPPF K  +   + ++   ++ +   F     ++ +        + 
Sbjct: 702 YPKEMHKSFDVVVCNPPFMKSTKTKNEKLDIIEQHFDNAYFMADDFQVRE-------LIM 754

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLENDLIEAIVAL 393
               L     G+A IVL+S   F+ +           WL ++  +  I+ L
Sbjct: 755 ALALLNMKDNGKAVIVLNSHIEFDEQGRIKHKRTFLNWLYKHYHVRDIINL 805


>gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21325842|dbj|BAC00463.1| Restriction enzymes type I helicase subunits and related helicases
            [Corynebacterium glutamicum ATCC 13032]
          Length = 1643

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 102/374 (27%), Gaps = 52/374 (13%)

Query: 43   RLECALEPTRSAVREKYLAF--------GGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
            R++  L+     ++E++  F          S  D E+   ++ +        +L    S 
Sbjct: 736  RIKALLDNASPTIKEEFERFVEGLRGNLNESISDDEAISMLSQHLITAPVFDALFAESSF 795

Query: 95   NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
              +N +   +   +D         + +S   +LEK     +        E+        V
Sbjct: 796  AKQNPVSQVMQRMAD----ALNSAELNSETEKLEKFYDSVR----IRAAEVSSAAGKQAV 847

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPT 213
            + ++YE   ++   + SE      TP ++V        D     F          + DP 
Sbjct: 848  IKDLYERFFKKAFKKQSEALGIVYTPVEIVDFILRAADDVSKKHFGRGLSDKDVHVLDPF 907

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----------LIR 262
             GTG F+   +                  H  E+    + V    +            +R
Sbjct: 908  TGTGTFMVRLLQSGLIKPEDLARKYANELHATEIMLLAYYVAAVNIETTYFGLEGERALR 967

Query: 263  RLESDPRRDLSKNIQQGSTLSKDLFTGK-------------------RFHYCLSNPPF-- 301
              E  P  +    I  G T        K                        + NPP+  
Sbjct: 968  NGEDAPVYEPFDGIVLGDTFQMYEDDDKLDLDVFTANNDRMERQRLTPVQVIVGNPPYSV 1027

Query: 302  GKKWEKDKDAVEKE---HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            G+    D +A  K     +  E            +      +          +  G  A 
Sbjct: 1028 GQSSANDNNANLKYPTLDRRIEDSYAKYSTATNKNSLYDSYLRAFRWATDRIHTQGVVAF 1087

Query: 359  VLSSSPLFNGRAGS 372
            V ++  +    A  
Sbjct: 1088 VSNNGWVDGNTADG 1101


>gi|194468360|ref|ZP_03074346.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
 gi|194453213|gb|EDX42111.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
          Length = 277

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 102/282 (36%), Gaps = 40/282 (14%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL+   V   ++  I +    +   + +  A   MTP  +  +   L+            
Sbjct: 7   ELNLQNVKPEIIRQIIQLSFLKVIRKDAIQANHQMTPDTIGLIMAFLI------EKVTKI 60

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I+T++DP  GT   LT  MN +   G        +V +G + + +   V         
Sbjct: 61  KEIKTIFDPAVGTANLLTTVMNQLKVNGD-----KDIVGYGIDNDEDMLEVAS------- 108

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           + ++ +    K   Q +  + D+    +    +S+ P G         +++  KN +  R
Sbjct: 109 VSTELQHLNVKLYHQDAVTALDIP---QCDLAISDLPIGYY------PLDENAKNYQ-TR 158

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              G          ++ HL  +  +     G   + L  S LF  +         +W+  
Sbjct: 159 AKEGHS--------YVHHLLIEQSMNYLKPGAFGVFLVPSSLFQTKESQSFV---KWIQS 207

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL 424
              ++ ++ LP +LF   N    + +L  +  + ++  KV L
Sbjct: 208 VAYLQGLINLPAELFANPNAQKSILLLQRQGGDSKQAVKVLL 249


>gi|293371761|ref|ZP_06618171.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633213|gb|EFF51784.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1944

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 52/253 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  D       
Sbjct: 105 FYTPKEITDTLADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPDADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----ERSDSFGRR--------SAQKAIHNYFFLKGLDTVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN- 412
           A + S   L      S +  +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKISVRNELFRQASLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 413 -RKTEERRGKVQL 424
             KTE  + +  +
Sbjct: 298 LNKTEMSQDERLM 310


>gi|153931712|ref|YP_001385412.1| modification methylase family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934578|ref|YP_001388819.1| modification methylase family protein [Clostridium botulinum A str.
           Hall]
 gi|152927756|gb|ABS33256.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930492|gb|ABS35991.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 577

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/496 (13%), Positives = 144/496 (29%), Gaps = 80/496 (16%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y   I+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYEFIK-----GKKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQELE 248
           +          + DP+CG G  L     ++ +            ++            L+
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWE 306
              +   +  + I+ L  D         +        L       F   + NPP+     
Sbjct: 137 NNLYGFDIDTIAIKILIIDLFYLTGYYNKNNFKKKDFLIEDINNNFDIYIGNPPYVGH-- 194

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +V+KE+      R+G       D S  F ++  N      N   +   + S   + 
Sbjct: 195 ---KSVDKEYSMLLKERYGYIYKDKGDISYCFFINALNY----SNINSKITFITSRYFME 247

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTEE--- 417
           +    +    +R++L EN  I  I+      F+         I   +  +      +   
Sbjct: 248 SKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRNIGNKVEI 298

Query: 418 ----RRGKV---QLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSRENGKFSR 466
               R  KV      N  D +        + +    ++ DD  R I++   ++ N     
Sbjct: 299 IKPCRYEKVKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDGSRDIINKIENKTNKTLGE 358

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +            ++     +FI+D+  +          K   L +S     +K      
Sbjct: 359 ICT------SYQGIITGCDKAFIVDEKTI----------KKENLERSIIKPWIKSSYINR 402

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
               + +SF+  S      K          I+  I  +  K            +W     
Sbjct: 403 EKINFRDSFIIYSDLIENVKKY------PNIIRHIEKYKDKLENRRECKKKVRKWYELQW 456

Query: 587 LTEYENVPYLESIQDY 602
             +++     + I  Y
Sbjct: 457 GRKFDIFEDKKIIFPY 472


>gi|282881655|ref|ZP_06290318.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1]
 gi|281304414|gb|EFA96511.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1]
          Length = 1932

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 78/253 (30%), Gaps = 52/253 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  D       
Sbjct: 105 FYTPKEITDTLADMLADYSVRPA--------RMLEPSAGVGVFVDSVLRHSPDADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDHK------MRTCGFEKIEKPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQNAIHNYFFLKGLDTVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN- 412
           A + S   L      S ++ +R  L     + + V LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVLQKH 297

Query: 413 -RKTEERRGKVQL 424
             K E  + +  +
Sbjct: 298 LNKKEMSQDERLM 310


>gi|325855448|ref|ZP_08171838.1| hypothetical protein HMPREF9303_0859 [Prevotella denticola CRIS
           18C-A]
 gi|325483825|gb|EGC86781.1| hypothetical protein HMPREF9303_0859 [Prevotella denticola CRIS
           18C-A]
          Length = 1491

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFAKQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGKGNIFVRNEPFEAIGELENKDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  +            GG  A + S   L    +
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHNYFFVKGLDCIK-------EGGILAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E  IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PRNEV-IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE 305


>gi|291536748|emb|CBL09860.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2550

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 73/261 (27%), Gaps = 69/261 (26%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +     F T  ++            ++   +       + +P+ G G F    
Sbjct: 972  EEYSAARATVNNAFYTSPEIAMCM--------NSALVQFGFRGGNVLEPSMGIGNFF--- 1020

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   GS          +G EL+  +  +       A + I   E             
Sbjct: 1021 -------GSMPAPMQRSKLYGVELDSISGRIAKQLYQNANISITGFE------------- 1060

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             +T   D F    F   + N PF                 G+   F P   K +  +   
Sbjct: 1061 -NTTYPDNF----FDVVVGNVPF-----------------GDYKVFDP---KYNKYNFRI 1095

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A++ +   L           IR++L E   +   + LP   F
Sbjct: 1096 HDYFLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAIRLPNTAF 1150

Query: 399  ---FRTNIATYLWILSNRKTE 416
                 T +   +  L  R+ +
Sbjct: 1151 KDNAGTEVTADILFLQKRERK 1171


>gi|162448589|ref|YP_001610956.1| DNA modification methyltransferase [Sorangium cellulosum 'So ce
           56']
 gi|161159171|emb|CAN90476.1| probable DNA modification methyltransferase [Sorangium cellulosum
           'So ce 56']
          Length = 576

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 79/232 (34%), Gaps = 29/232 (12%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             E     +T   VV+L   L     D           +L +P CG G FL  A   +  
Sbjct: 28  SGEAHGVVLTKPHVVNLILDLAGYTADRDL-----ASLSLLEPACGHGAFLVPAAERLIQ 82

Query: 230 CGSHHK-----IPPILVPHGQELEP-ETHAVCVAGMLIR-RL-ESDPRRDLSKNIQQGST 281
               H      I P +  +  E +  +   + VAG L R  L  +D  R     I  G  
Sbjct: 83  SARRHDRDLLDIEPAIRSYDVERDHVDRARLAVAGALARLGLPHADATRLSEAWIAHGDF 142

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L      G+RF   + NPP+ +      + +  E +     R+     +    + L++  
Sbjct: 143 LLTSQ--GRRFDAVVGNPPYVR-----IEQLSPELQEEYRHRYRSLYDR----ADLYVAF 191

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           +   LEL   GG  + I      L    A      +RR L     +   V L
Sbjct: 192 IERGLELLAPGGVLSFICADRWTLNRYGAP-----LRRLLSRWFRVRCYVDL 238


>gi|116326651|ref|YP_796570.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
            SK11]
 gi|116109019|gb|ABJ74139.1| DNA or RNA helicase of superfamily II [Lactococcus lactis subsp.
            cremoris SK11]
          Length = 1560

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 77/272 (28%), Gaps = 39/272 (14%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCG 215
             +Y+   +      +E      TP +VV      + D     F ++       + DP  G
Sbjct: 838  TLYDKFFKTAFKSTTERLGIVFTPIEVVDFIIHSVDDVLKKHFGKALASKDVHILDPFTG 897

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM-----LIRR 263
            TG F+   +N++ +     K              H  E+   ++ +    +      I  
Sbjct: 898  TGTFIVQTLNYLKEQMDAGKTSLAEITRKFTQELHANEIVLLSYYIAAINIEATFDEING 957

Query: 264  -------LESDPRRDLSKNIQQGSTLSKDLF----------TGKRFHYCLSNPPFGKKWE 306
                    E     D  ++ +   TL  D F                  + NPP+ K   
Sbjct: 958  EEKGYVPFEGIVLTDTFESAETEDTLDDDYFGTNDARLKRQQEVPITAIIGNPPYSKGQS 1017

Query: 307  KDKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLS 361
             D D  +                K S  S         +          NG G  A V +
Sbjct: 1018 NDNDNNKNLEYPELFKSVANTYVKHSKTSSVLGMYDSYVLSIRWASNRLNGKGVVAFVSN 1077

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             S + +  A      +R+ L E      I  L
Sbjct: 1078 GSYIDSQSADG----LRKSLYEEFNYLYIFNL 1105


>gi|239828042|ref|YP_002950666.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239808335|gb|ACS25400.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 329

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 85/260 (32%), Gaps = 48/260 (18%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRD------VVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           E + + F   V +G +++  P        V    + L+             +  T+ DP 
Sbjct: 71  EEIRKAFQLAVLKGMKEYTQPHHQMTPDAVSLFISYLVNQF------TRQHLALTILDPA 124

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GT   LT  +NH+    +          +G +++     +         L+    +  +
Sbjct: 125 VGTANLLTTVLNHLKGKQTKS--------YGVDVDDVLIKLAYVN---ANLQKHAIQLFN 173

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           ++  Q           +     + + P G    K+              RF     +   
Sbjct: 174 QDGLQP-------LFVELADVVVCDLPVGYYPHKEN-----------ASRFALKAEEGHS 215

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +         +       GG    ++ ++   + +A    +++  ++ E+ +I+ ++ L
Sbjct: 216 YA---HHLFIEQSLYYTKEGGYLFFLIPNTLFSSDQA----AKLHEFIKEHAVIQGLLQL 268

Query: 394 PTDLFFRTNIATYLWILSNR 413
           P  +F     A  ++IL  +
Sbjct: 269 PLSMFKTEQAAKSIFILQKK 288


>gi|298377202|ref|ZP_06987156.1| type I restriction enzyme, M subunit [Bacteroides sp. 3_1_19]
 gi|298266186|gb|EFI07845.1| type I restriction enzyme, M subunit [Bacteroides sp. 3_1_19]
          Length = 255

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 57/189 (30%), Gaps = 24/189 (12%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S++       F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKIGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MV-LCTD------SGETATGKRICDPTCGSGRLLLAY--HVRHLGNY--------LVAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           +      + V  ML+     +     S   +          T  +     +  P  ++  
Sbjct: 159 VNRTCCLMTVCNMLVHGCIGEVIHHDSLFPENFMDGWMVNHTLTQ-----TGIPTIRRMS 213

Query: 307 KDKDAVEKE 315
           K++    + 
Sbjct: 214 KEEYRTSRN 222


>gi|294850453|ref|ZP_06791183.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294850682|ref|ZP_06791404.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294822480|gb|EFG38927.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294822656|gb|EFG39095.1| conserved hypothetical protein [Staphylococcus aureus A9754]
          Length = 115

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +   +N    +  ++D Q  +I+D Y  +E   K+S     + 
Sbjct: 1   KCRQQDDNVLFIDASNDFEKGKN----QNHLSDAQVERIIDTYKRKETIDKYSYSATLQE 56

Query: 473 FGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILK 520
                  +  P  +    ++  +     + +     ++++ + Q     + +
Sbjct: 57  IADNDYNLNIPRYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 108


>gi|170717953|ref|YP_001785001.1| type I restriction enzyme M subunit [Haemophilus somnus 2336]
 gi|168826082|gb|ACA31453.1| putative type I restriction enzyme M subunit [Haemophilus somnus
           2336]
          Length = 265

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 17/186 (9%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIARLEKAGLLYKICK 138
            Y  SE     +  +     L +Y      N +  F       S     + A LL     
Sbjct: 18  HYRRSEVFYDFITLSALDMYLVTYRDQAEPNLRERFAHAKARYSDSEFTQLAELLAVTVN 77

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +             + +++ +L     +        + TP  +  L   + L   D +
Sbjct: 78  ALT-------QKRYDFLGSVFMNL-----NLGDGYRGQYFTPSHIADLMAKVTLQDCDRI 125

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
             +   +  TL +PTCG+G  +   +N + D  + +     L  H Q+++     +C   
Sbjct: 126 ISQQGFV--TLSEPTCGSGVMVIGCVNAMFD--AKYNPQQQLWVHCQDVDFTAAMMCYIQ 181

Query: 259 MLIRRL 264
           + +  +
Sbjct: 182 LSLLHI 187


>gi|301311336|ref|ZP_07217263.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
 gi|300830422|gb|EFK61065.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
          Length = 255

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 19/162 (11%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S++       F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKIGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MV-LCTD------SGETATGKRICDPTCGSGRLLLAY--HVRHLGNY--------LVAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +      + V  ML+     +     S   +          T
Sbjct: 159 VNRTCCLMTVCNMLVHGCIGEVIHHDSLFPENFMDGWMVNHT 200


>gi|256956669|ref|ZP_05560840.1| predicted protein [Enterococcus faecalis DS5]
 gi|300860462|ref|ZP_07106549.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|256947165|gb|EEU63797.1| predicted protein [Enterococcus faecalis DS5]
 gi|300849501|gb|EFK77251.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|315035632|gb|EFT47564.1| hypothetical protein HMPREF9501_01554 [Enterococcus faecalis
           TX0027]
          Length = 494

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 97/293 (33%), Gaps = 33/293 (11%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-TDAMNHVADC 230
           +    F T + + +   +LL        K       TL +P  G G  L      +  + 
Sbjct: 9   KENGIFYTDKKLANKMVSLL--------KIDYKSEFTLIEPAVGEGHILSLIVKKYFIEN 60

Query: 231 GSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              +K            G ++  E  AVCV+ +     E   R+      +  +   K+L
Sbjct: 61  KDKNKDEQAEFLENNIAGFDIRDEAIAVCVSKLNDLSEEYIQRKIEWNIQKFDALNRKEL 120

Query: 287 FTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 + Y +SNPP+  +   D+  +    +  E           S  +     +    
Sbjct: 121 IEKFGTYDYVISNPPYVSRHNMDERTITALREKSEF---------CSKFNFDLYYYFFEI 171

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNIA 404
                N  G+   +  +S +   +A SGE  +R +L++N L+E I+    ++ F      
Sbjct: 172 GFDLWNRSGKIVYITPNSYI---KARSGEVMMR-YLIDNSLVETIIDYKDEMKFEGATTY 227

Query: 405 TYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKRRIINDDQRRQI 452
           T + + S      R    + IN       DL             + + Q   I
Sbjct: 228 TAISVFSTGNKVLRVKNNKGINLVKVTYRDLMEKYNYMIYSHDFLTEFQEEFI 280


>gi|265763566|ref|ZP_06092134.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256174|gb|EEZ27520.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1038

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          ++    A F E+   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +       ++GM++  L  +     +       T+ +  F    F    
Sbjct: 143 -SGTYGYAIEKD------LISGMILSLLHENTLTRTAAFE----TIGEQGFEHTTFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDAELWKKGGMYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I    
Sbjct: 239 AFITSRGI----ADTPGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQKH 294


>gi|298370200|ref|ZP_06981516.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281660|gb|EFI23149.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1493

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 90/328 (27%), Gaps = 50/328 (15%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCG 215
             +Y+   R     ++E      TP +VV      + D     FK S       + DP  G
Sbjct: 891  ELYDKFFRNAFPRMTERLGIVYTPVEVVDFIIKSVEDVLQHEFKSSLQDKGVHILDPFTG 950

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRR-----LESDP 268
            TG F+T  +                  H  E+    + +    +           ++ + 
Sbjct: 951  TGTFITRLLQSGIIPRDRLPEKYKNEIHANEIVLLAYYIATINIESAYHGILAGNIDGNV 1010

Query: 269  RRDLSKNIQQG--------STLSKDLFTGKRFH--------------YCLSNPPFGKKWE 306
              D+     +G             D+                       + NPP+    E
Sbjct: 1011 SDDVPYVPFEGICLTDTFQMYEKGDMLDEMLVDNSARRKRQKALDIRVIIGNPPYSAGQE 1070

Query: 307  KDKD---AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
               D    +E  H +  + R        +             +    +  G+  ++   +
Sbjct: 1071 SANDNNANIEYPHLDARI-RQTYAEHSTATLKNALYDSYIRAIRWASDRIGQQGVIGFVT 1129

Query: 364  PLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLW 408
                  A + +  +R+ L E      I  L  +              +F   +     + 
Sbjct: 1130 NAGWVEANTADG-LRKCLAEEFSSLYIFHLRGNQRTSGERSRKEGGKIFGSGSRAPIAIS 1188

Query: 409  ILSNRKTEERRGKVQLINATDLWTSIRN 436
            IL      E+RG++   +  D  T  + 
Sbjct: 1189 ILVKNPQAEKRGQIYFHDIGDYLTREQK 1216


>gi|78189163|ref|YP_379501.1| adenine specific DNA methyltransferase [Chlorobium chlorochromatii
           CaD3]
 gi|78171362|gb|ABB28458.1| adenine specific DNA methyltransferase [Chlorobium chlorochromatii
           CaD3]
          Length = 1059

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/509 (12%), Positives = 143/509 (28%), Gaps = 102/509 (20%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRV 154
              L      F          +D    +  +  A        + + +  +    T  +  
Sbjct: 245 AAELIPKTNPFLRKLFQYIAGYDLDDRLVWIVDALADIFKATDVNSLLKDFRNATQQNDP 304

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT------ 208
           + + YE  +  +   + +    + TP  VV+     + D     F    G+  T      
Sbjct: 305 IIHFYETFLAEYDPTLRKSRGVWYTPEPVVNFIVRAVDDILKTEFDLRDGLTDTSKITVE 364

Query: 209 -------------------------LYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVP 242
                                    + DP  GTG FL + + H+         +    V 
Sbjct: 365 IDKATTDKNFKSKHIKQKQEVHKVQILDPAVGTGTFLAEIIKHIHKQFEGQEGMWNNYVS 424

Query: 243 H-------GQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----- 288
           H       G E+   ++A+      +L+         D    +   ++L +         
Sbjct: 425 HHLIPRLNGFEILMASYAMAHLKLDLLLAETGYTSTTDQRFRVFLTNSLEEHHPETGTLF 484

Query: 289 ----------------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                                  L NPP+          +E+  ++ +    G G  +  
Sbjct: 485 ASWLSQEANEANYIKRDTPVMVVLGNPPYSGHSANKSKWIEELLRDYKQEPNG-GKLQEK 543

Query: 333 DGSML---FLMHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           +   L   ++  +   +  +  NG G    + + S L           +R  LL     +
Sbjct: 544 NPKWLNDDYVKFIRYGQYFVEKNGEGILGFINNHSFL----DNPTFRGMRWHLLSTF--D 597

Query: 389 AI--VALPT---------------DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           AI  + L                 ++F  +  ++  L++ + +K +    +V   +    
Sbjct: 598 AIYLIDLHGNAKKKEACPDGSSDKNVFDIQQGVSINLFVKTGKKKKGALAEVFHYDVYGD 657

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY-------RTFGYRRIKVLR 482
                +   K+ +   D  +  +           FS +  Y         F    + ++ 
Sbjct: 658 RPFKYDFLSKKSLSTVDFTKLTVAAPNYLFVPKDFSVLASYNQGFAINELFSLNSVGIVT 717

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLH 511
             R  F++D + LA  +    +  L    
Sbjct: 718 -ARDRFVIDSSKLALTQRIKNFFSLDKDE 745


>gi|256544790|ref|ZP_05472162.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399679|gb|EEU13284.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 3649

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 129/426 (30%), Gaps = 82/426 (19%)

Query: 31   FGKVILPFTLLRRL--------ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
            + +  LPF+ L+ +           L   R    +K L       +  + ++    +   
Sbjct: 1773 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNNLIRNDRENIEG 1832

Query: 83   TSEYSLSTLGSTNTRNNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
             SE SL      N   NL        +  A  + +  +  +  AR ++  +L K    + 
Sbjct: 1833 VSEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYI-GWG 1891

Query: 142  GIELHPDTVPD----RVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDD 196
            G+    D   +       + + E+L     +   E     F TP+ V+            
Sbjct: 1892 GLSDVFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE------- 1944

Query: 197  ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                        + +P+ GTG F+ +    + +             +G EL+  +  +  
Sbjct: 1945 -SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK 1993

Query: 257  AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                              +  Q     +  F+   F   + N PFG+    D+       
Sbjct: 1994 -------------ELYPNSNIQIKGFEETNFSNNLFDVAIGNIPFGEFKIADR------- 2033

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
               E  R           + L   +   K       GG  A + SS  +          +
Sbjct: 2034 ---EYERN----------NFLIHDYFFAKTLDKVRDGGIIAFITSSGTMDKKS-----ED 2075

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            +RR++ E       + LP   F     T + + +  L        R ++  I+  + W  
Sbjct: 2076 VRRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKK------RNRLLKID--EDWIK 2127

Query: 434  IRNEGK 439
            +  + K
Sbjct: 2128 LDKDAK 2133


>gi|237745126|ref|ZP_04575607.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432355|gb|EEO42567.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 2042

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/422 (13%), Positives = 117/422 (27%), Gaps = 79/422 (18%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D       E       + +P+C  G F+          G+  K       +G EL+
Sbjct: 540 KVVIDNIYTKLIEFGFKEGRILEPSCAVGNFI----------GNLPKELASSQVYGIELD 589

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +               +   ++  Q     +  F+   F   + N PF       
Sbjct: 590 SISGNIAK-------------QLYPQSEIQVKGFEETNFSNNFFDIAIGNVPF------- 629

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                        G F     +    + L   +   K       GG  A + SS  L   
Sbjct: 630 -------------GNFKILDREYDRYNFLIHDYFFAKTIDKVKSGGIIAFITSSGTL--- 673

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425
                ++ IR++L E   +   V LP  +F     T + + +  L        R K+Q +
Sbjct: 674 --DKKDNSIRKYLGERCELLGAVRLPNSVFKGVAGTEVTSDILFLRK------RDKIQEL 725

Query: 426 NATDLWT--SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           N    +     +N  K  +   D+    I ++                  G   I +   
Sbjct: 726 NNEIWYEIAEDKNGLKYNKYFVDNPEMIIGEM--------------KEVNGPFGITLTCS 771

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           L  +   ++   A       +       +   + +    ++             +     
Sbjct: 772 LEDTNFEERLKSALENIKGEFTATLEKEEPKTITLSDENIKNFSYVARNNKIYFKENNKL 831

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
             +    K  +        +   ++     V  +  E I D  L + E         D+F
Sbjct: 832 VLQEFSQKDIRKIEKYIELSQSLRN-----VIQIQKEDITDERLIK-EQEKLNNIYDDFF 885

Query: 604 VR 605
            R
Sbjct: 886 NR 887


>gi|116254493|ref|YP_770329.1| putative restriction modification methylase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115259141|emb|CAK10253.1| putative restriction modification methylase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 565

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 92/282 (32%), Gaps = 37/282 (13%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P    D  +++IY  L+ R   +  +    + TP  +V      L      L ++     
Sbjct: 99  PHAWSDHAIASIYAVLMPR---DRRKQLGAYFTPPHLVDHLVWRLQACGMDLGRD----- 150

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------LVPHGQELEPETHAVC---V 256
             L DP  G   FL      +           +       +   G E+EPE   +    +
Sbjct: 151 -RLRDPAAGGAAFLVPLARLMISEWRSAGATDLEILTRLPIRLLGSEIEPELAIIANALL 209

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             ML++    D  +     + Q      +  T     + + NPPF +    D        
Sbjct: 210 HRMLVKEFGIDAEKAAGIGLVQTDDSLAEGRTNGDVDHEIGNPPFLRLSRLDHAQARPRF 269

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +   GR             L+ M +   LE  P  GG    +L +S L     G   S 
Sbjct: 270 ADISSGRLN-----------LYAMFVRRALEAVPV-GGLVGYILPASFL----GGPEFSL 313

Query: 377 IRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTE 416
            RR +L+   + AI  V   +D+F          IL  R+  
Sbjct: 314 FRRRVLQLAEVLAIDMVEKRSDVFLDAIQDACFLILRRRRAP 355


>gi|325859541|ref|ZP_08172679.1| hypothetical protein HMPREF9303_0400 [Prevotella denticola CRIS
           18C-A]
 gi|325482944|gb|EGC85939.1| hypothetical protein HMPREF9303_0400 [Prevotella denticola CRIS
           18C-A]
          Length = 1509

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVSAISDALASTNLQVRRCLDPSMGMGAF---AEIFARQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGKSNVFVRNEPFEAIGELENKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G             + +     +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGRD-------ILKRESTRAIHNYFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 260 EA----IRRYLMQNSHLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE 305


>gi|227524365|ref|ZP_03954414.1| adenine-specific methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088596|gb|EEI23908.1| adenine-specific methyltransferase [Lactobacillus hilgardii ATCC
           8290]
          Length = 356

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 45/324 (13%)

Query: 131 GLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            L  +  K  S I  +   D      +    +  I +        A   +TP        
Sbjct: 70  DLTDENAKKVSRIYSKFDRDKYDSETLRKAIQMAILKAIRVDRIQANYQITP----DTIA 125

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++      +F     +  ++ DP  GTG  LT   N +        I       G E +
Sbjct: 126 NIVGYIISGIFNGQKRL--SMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIEND 178

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                +      I+ + ++   + +        +             +S+ P G      
Sbjct: 179 DAMFELAAGSFDIQHIHAELFHEDAIQNVLAPVV----------DIAVSDLPVGYYPI-- 226

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 E+  G   R   G          ++ HL  +  +     G     L  S +F  
Sbjct: 227 -----DENTKGFNTRSNDGHS--------YVHHLLIEFAMDHVKKGGYGFFLVPSQIFKT 273

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                  ++ +W+  N  ++A++ LPT+LF        + IL N     ++    ++   
Sbjct: 274 SEA---KQLLKWMQGNVYLQALLNLPTELFQNKASQKAIMILQNSGGNAKQASPIML--- 327

Query: 429 DLWTSIRNEGKKRRIIND-DQRRQ 451
             + S +++   +R + + D  ++
Sbjct: 328 GEFPSFKDQPAFQRFLTEIDDWQK 351


>gi|172039696|ref|YP_001799410.1| putative methylase [Corynebacterium urealyticum DSM 7109]
 gi|171851000|emb|CAQ03976.1| putative methylase [Corynebacterium urealyticum DSM 7109]
          Length = 607

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 96/359 (26%), Gaps = 73/359 (20%)

Query: 84  SEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFED--FDFSSTIARLEKAGLLYKICKN 139
             + L+   + N  + L S     +  +N +    D    F      +    L  +   +
Sbjct: 60  YRFVLNHTNADNLGSQLNSLFEVLNTPENHRRRVPDHFAKFPYVNGSIFADSLPLEFFDH 119

Query: 140 ------FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH----LATA 189
                       H   +   V  ++++  + +         E + + ++++     L   
Sbjct: 120 DMREALLDACRFHWSRISPAVFGSMFQ--LVKSKEARRADGEHYTSEKNILKTLEPLFLD 177

Query: 190 LLLDPDDALFKESPGMIRT------------LYDPTCGTGGFLTDAMNHVADCG------ 231
            L D    L +                      DP CG G FL  A   +          
Sbjct: 178 ELRDEAKRLIQAKSTPGEKPREFRGSLADMVFCDPACGCGNFLVVAYRELRKIETAVIVA 237

Query: 232 --------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR-------- 269
                         S  +   I   +G EL      +    M +   +++          
Sbjct: 238 IREREGEAGMSLDVSWEQKLSIGQFYGFELNWGPAKIAETAMFLVDHQANLELADAIGAA 297

Query: 270 -----RDLSKNIQQGSTLSKDLFTGKRF----HYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 +++ +I   + L+ D            +   NPPF  ++ K K+          
Sbjct: 298 PDRLPIEITAHIVHDNALALDWSEELPATKGQTFIFGNPPFIGQYSKTKEQTADM----- 352

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             R   G         L   H    L +  +  G  A V  +S        +    I+R
Sbjct: 353 --RRAWGADYDGYLDYLTAWHAMT-LRVLSDRAGEFAFVTPNSITQGQPVPALFRPIQR 408


>gi|327405008|ref|YP_004345846.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327320516|gb|AEA45008.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 608

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 95/297 (31%), Gaps = 34/297 (11%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R++K    +K+ + FS I           +   +E +I     +    +    TP  +  
Sbjct: 45  RIKKNSPDFKLVEEFSRI---HTLRSIEDLIEAFEFVIS---PQEKIVSGAVYTPESIRD 98

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHG 244
                       L   +      L DP CG  GFL  A  ++    G  +K        G
Sbjct: 99  YII------TSTLSNTNDLTGVNLCDPACGCAGFLYTAAKYLKQQTGRTYKQIYRDNIFG 152

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPP 300
            +++  +       + +  L      D   N+  G+ LS +        + FH    NPP
Sbjct: 153 LDIQEYSIERSKILLSLAALLEGEDVDFDFNLFTGNALSFNWNEEITGFEGFHVIAGNPP 212

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +      D      +     L  +   +        L++      +     GG    I +
Sbjct: 213 YVCSRNID------DESKDLLQNWQ--VCSTGHPD-LYIPFFELGMTYLRPGGILGYITM 263

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTE 416
           +S   F    G     +R +L + D    I+      +F   +  T +  + NR ++
Sbjct: 264 NS--FFKSINGRA---VREYLAQFDN--TIIDFGGYQVFNSKSTYTCICFIQNRASD 313


>gi|238925906|ref|YP_002939424.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
 gi|238877583|gb|ACR77290.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
          Length = 2560

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 61/232 (26%)

Query: 190  LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            +++D    + +        + +P+ G G F           G   +       +G EL+ 
Sbjct: 1042 IVIDSMYQVLENLGFTKGNILEPSMGVGNFF----------GMLPENLNQSKLYGVELDS 1091

Query: 250  ETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
             +  +       A + I+  E                  K  +    F   + N PFG  
Sbjct: 1092 ISGRIAKLLYPDANIQIKGFE------------------KTDYPNDFFDVTIGNVPFGAY 1133

Query: 305  WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               D+          +  RF          + +   +   K       GG AA++ +   
Sbjct: 1134 KVNDR----------QYDRF----------NFMIHDYFLAKTIDQLRPGGVAALITTKGT 1173

Query: 365  LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            +          E+R++L E   +   + LP   F     T ++  +     R
Sbjct: 1174 MDKASP-----EVRKYLAERADLLGAIRLPNTAFKANAGTEVSADILFFQKR 1220


>gi|308271470|emb|CBX28078.1| hypothetical protein N47_G34020 [uncultured Desulfobacterium sp.]
          Length = 537

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 89/268 (33%), Gaps = 45/268 (16%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  V  L    +L+ +            T+ DP  G G F  + +      
Sbjct: 15  RKDYGQFFTPSSVARLMVQWVLNDNPT----------TVLDPAFGLGIFYDEVLK----- 59

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K    L   G E++             +++      +L+K+  + +          
Sbjct: 60  ---TKPSQQLQFIGYEID-------------KKIIGYLNSELNKSNLKINNCDYLEANAG 103

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+ +     K          ++G+   G   IS   +L  ++         
Sbjct: 104 SFDGIICNPPYMRFQNFLKRHSVLPKIEKQIGKRLVGYSNISSVFLLKALNEL------- 156

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYLW 408
           N  G  A ++       G       E++R LL+N L++ I+      ++F        + 
Sbjct: 157 NDNGNLAFIMPFEFFNTGYG----KEVKRSLLKNHLLKQIIIFSNEKEIFPDATTTVCVL 212

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN 436
            L  +  +E   K+  I A D  + + N
Sbjct: 213 -LCKKDGKEDDIKITQIKAEDEISQLSN 239


>gi|237707974|ref|ZP_04538455.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457960|gb|EEO63681.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1227

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|106534258|gb|ABF82190.1| putative methylase [Borrelia hermsii DAH]
          Length = 753

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 31/201 (15%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-----DFSSTIARLEKAGLLYKICKNF 140
           + L+ L +T+        I  F  N  A+ +D      + +S+        +L ++    
Sbjct: 229 FFLAKLNNTSNSRIDFDNIKKFIPNNFALIQDILKLIDNIASSREYDSIRWVLEELIDIV 288

Query: 141 SGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + I+ +               D          YE  + ++   + +    + TP  VV+ 
Sbjct: 289 NNIDSNTIFEQFSFTQNVKSSDNNVKDPYLYFYEDFLAKYDKSLRKNKGVYYTPHSVVNF 348

Query: 187 AT----ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------ADCGSHH 234
                  +L          +     T+ D   GTG FL + +  +             + 
Sbjct: 349 IVSSLNKILKYNFGLENGFANREEVTVLDFATGTGTFLLEVIKCILKEIPKQTGKQKDYI 408

Query: 235 KIPPILVPHGQELEPETHAVC 255
               +   +G E     +AV 
Sbjct: 409 NDHILKNIYGFEYLMAPYAVA 429


>gi|291526662|emb|CBK92248.1| DNA methylase [Eubacterium rectale M104/1]
          Length = 2550

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 121/428 (28%), Gaps = 89/428 (20%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            +    ++   +       + +P+ G G F           GS          +G E++  
Sbjct: 991  IAMCINSALVQFGFRGGNVLEPSMGIGNFF----------GSMPAPMQRSKLYGVEIDSI 1040

Query: 251  THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 1041 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVVGNVPF---- 1078

Query: 306  EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                         G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 1079 -------------GDYKVFDP---KYNKYNFRIHDYFLAKALDQVRPGGMVAVITTKGTL 1122

Query: 366  FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV 422
                       IR++L E   +   V LP   F     T +   +  L  R   ER+   
Sbjct: 1123 DKANPT-----IRKYLAERAELVGAVRLPNTAFKDNAGTEVTADILFLQKR---ERK--- 1171

Query: 423  QLINATDLWT--SIRNEGKKRRIINDDQRRQIL-----DIYVSRENGKFSRMLDYRTFGY 475
              I+    W    +   G        +    +L     D  +  ++ +++  ++      
Sbjct: 1172 --IDIEPDWVHLGVTENGIAVNSYFAEHPEMMLGSMEYDTRIYGQDSRYTVCVNNDENFN 1229

Query: 476  RRIKVLRPLRMSFILDKTGLARLEADIT-WRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                + +            +  ++A +T + +++   +     I      + Y Y + E 
Sbjct: 1230 MYETLNK-----------AIGNIKAQMTDFERVADEAEQTEEVIPADPDVRNYTYTFFEG 1278

Query: 535  FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594
             +     S   K    + ++  I +            D   D   E           NV 
Sbjct: 1279 KLYYRENSEMVKKEVSQTAEERIRSLDEIRQITRELIDIQMDGCSEEELSDKQRLL-NVK 1337

Query: 595  YLESIQDY 602
            Y   ++ Y
Sbjct: 1338 YDAFVKQY 1345


>gi|265763823|ref|ZP_06092391.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256431|gb|EEZ27777.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 248

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 138 KNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           + F+ + +  D  P      + ++  +       +     F TP  V  L   L+  P  
Sbjct: 63  QAFAALVMQMDRQPLVDPFGDYFQEFL------SNAQNGQFFTPFGVCELMNQLITAPK- 115

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +  +     R + DP CG+G  L  A           +    L   G ++      + +
Sbjct: 116 -VNDQPKQGDRRVLDPACGSGRLLLSAA----------QKDRALTFVGIDISYTCCLMTI 164

Query: 257 AGMLIRRLESDPRRDLSKNIQQGS 280
             + +  L  +     +   Q   
Sbjct: 165 INLCLNSLNGEVLHMNALTDQCWH 188


>gi|254885063|ref|ZP_05257773.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837856|gb|EET18165.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1665

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          +       FK++   +R+  +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVQAVTKQIHTTFKDNGLQMRSFLEPSAGIGGFLPVAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +P      V+G+++  L  +     +       T+ +  F   +F    
Sbjct: 143 -SDTCGYAIEKDP------VSGLILSLLNDNTITRTAGFE----TIDEQGFKHTKFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    E   K G   +           +     +   K     N GG  
Sbjct: 192 SNIPFGNFRVFDA---ELWKKGGIYEQ----------ATKTIHNYFFVKAMELLNEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S               +R +L+ +  + + + LP  LF +T+   + + L +    
Sbjct: 239 AFVTSRGVADTPSN----KFVRDYLVSHADLISAIRLPDMLFMQTSGIEVGSDLLVFQKH 294


>gi|225620242|ref|YP_002721499.1| hypothetical protein BHWA1_01316 [Brachyspira hyodysenteriae WA1]
 gi|225215061|gb|ACN83795.1| hypothetical protein BHWA1_01316 [Brachyspira hyodysenteriae WA1]
          Length = 438

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 9/180 (5%)

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELG 322
           L+ D       N        K++F G  F   + NPP+   K+    D V+    +    
Sbjct: 2   LDFDEETQYKINCFDWEDEFKNIFKGGGFDVVIGNPPYVFIKYVDWADDVKGYFSSNYDI 61

Query: 323 RFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                  K +  G +        +        G  + ++ +  L            R+++
Sbjct: 62  TNKDNKSKSNQSGKINLYTLFIFRAIKLLKENGVFSFIVPNGLLRTTTYDMA----RKFI 117

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L+N  I+ I  L   +F      T   I    K+       ++I+A  L     NE K  
Sbjct: 118 LDNYHIDFIADLKDGVFKGVTAPT--IIFKFSKSCSN-DDTKIIDANCLVDGFVNESKYH 174


>gi|222080160|ref|YP_002540023.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738805|gb|ACM39584.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 470

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 60/221 (27%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F         D              G EL+P T  +         
Sbjct: 187 WRGGRILEPGIGTGLFPALMPEAYRDN---------SFVTGIELDPVTARIARL------ 231

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I        DL     +   + NPPF  +      +V  +    +LG 
Sbjct: 232 ------LQPRARIINADFARTDLAPI--YDLAIGNPPFSDR------SVRSDRSYRKLG- 276

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                       +    +   +       G  AA V SS  +    A +     R  +  
Sbjct: 277 ------------LRLHDYFIARSIDLLRPGALAAFVTSSGTMDKADATA-----REHIAR 319

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +  + A + LP   F     T++   +     RK  +  G 
Sbjct: 320 SADLSAAIRLPEGSFRRDAGTDVVVDILFFRKRKVGQAEGD 360


>gi|317153587|ref|YP_004121635.1| hypothetical protein Daes_1879 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943838|gb|ADU62889.1| hypothetical protein Daes_1879 [Desulfovibrio aespoeensis Aspo-2]
          Length = 1036

 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 93/351 (26%), Gaps = 96/351 (27%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVS------------EGAEDFMTPRDVVHLATALLLDPDDA 197
           V  +V+  IYE  +                    E      TP  +     A  L P  A
Sbjct: 338 VETKVLGEIYEQFLGEVIIVAGSTIEIESKPEVRESGGVVPTPSFIADTIVARTLGPLLA 397

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------------------------- 231
                  +  T+ D  CG+G FL  A +++                              
Sbjct: 398 GKSPEELLHFTVADICCGSGIFLLSAYDYLLGHYLDWYVAGGPGKHAGRTIYQVGKNLWR 457

Query: 232 ---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST------- 281
                 +   +    G +++P    +    +L++ +E +    L + +++          
Sbjct: 458 LTFDEKRRILLAHMRGVDIDPNAVEIAQFSLLLKLIEDESEAALEEYVRRMKHAALPALD 517

Query: 282 -------------------------------------LSKDLFTGKRFHYCLSNPPFGK- 303
                                                   D      F   + NPP+ + 
Sbjct: 518 DYIRCGNSLVSTAEWEAACGPLPAMLHDAINPFGWEEEFADEMADGGFDVVVGNPPYIRI 577

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +      A E E  +     +        D   LF+      ++      GR  +++ + 
Sbjct: 578 QNMVAYSAQEVEFYHTTNAPYSTAQQDNFDKYALFIERALGLIK----DNGRLGVIVPNK 633

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA--TYLWILSN 412
            +           +R  L  + ++E IV   +   F   I   T + ++  
Sbjct: 634 FMTIRSG----RALRGLLTRSPILEYIVHFGSKQVFGQGITNYTCILVMDR 680


>gi|229892402|gb|ACQ89838.1| helicase [Enterococcus faecalis]
          Length = 2727

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 65/245 (26%), Gaps = 69/245 (28%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP  V+      L                 + +P+CGTG F           G     
Sbjct: 1232 FYTPPVVIKAMYEAL--------DRLGFSEGNILEPSCGTGNFF----------GLLPDS 1273

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  HG E++  T  +       A + I   E                  K       
Sbjct: 1274 MANSKLHGVEIDSLTGRIAKQLYQKANIAIEGFE------------------KTKLPDDH 1315

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   L N PFG     D     +  +  +                      A  L+    
Sbjct: 1316 FDVVLGNVPFGDFRVNDSRYNAQNFRIHDF-------------------FFAKALDKVRA 1356

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
            GG    I         G       E+R+++ +   +   + LP + F     T + + + 
Sbjct: 1357 GGVVMFIT------SKGTMDKASPEVRKYIAQRAELLGAIRLPDNTFRANAGTEVTSDIL 1410

Query: 409  ILSNR 413
            IL  R
Sbjct: 1411 ILQKR 1415


>gi|313667110|gb|ADR73003.1| RM.BspCNI [Bacillus sp. 1310(2010)]
          Length = 918

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 107/307 (34%), Gaps = 40/307 (13%)

Query: 133 LYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHLATA 189
             K+  NF+   + L  ++  DR++    E L+    +      A  F TP+++  + T+
Sbjct: 299 TLKVLTNFNDYIMNLDFNSYSDRLL----EELLNIVVTRSKRKVAGQFSTPKELAMILTS 354

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE--- 246
           L +    +           + DP CGTG  +  A +     G         +  G +   
Sbjct: 355 LTMTDKSS----------RISDPCCGTGTIVKAAYDLKLVSGIDSSDAIDQIWAGDKFRY 404

Query: 247 -LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ------GSTLSKDLFTGKRFHYCLSNP 299
            L+    A+     L +++        + N           +          F   +SN 
Sbjct: 405 PLQFAMLALSSPENLGKQINIYKDDVFNLNASHKVELHSPISKETYEVDLGEFDTVVSNL 464

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF ++    +        N E  RF   L +  +G      ++A K++      G A ++
Sbjct: 465 PFVQQETLAEL-------NPEAIRFIEELNEAFNGRSDLYAYIALKIDEILPEKGTAGLI 517

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNIATYLWILSNRKTEER 418
           +S+S L          E+++       I+ I+       F   ++ T + +L    T   
Sbjct: 518 VSNSWLGTEFGERFFDELKKR----YHIKYILTSGKGRWFQNADVVTNIIVLEKGNTSPD 573

Query: 419 RGKVQLI 425
           + KV  I
Sbjct: 574 K-KVNFI 579


>gi|317011733|gb|ADU85480.1| hypothetical protein HPSA_07665 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 125/415 (30%), Gaps = 80/415 (19%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 957  EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1008

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1009 -------AHAPSDKNYRFIGTELDP--------------ISANISQFLYPNQVIQNTALE 1047

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G    K   + +KE  N  +  +  G                 
Sbjct: 1048 NHHFYQEYDAFVGNPPYGN--HKIYSSNDKELSNESVHNYFLGK-------------AIK 1092

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +          + R ++++N      + LP  +F  T   
Sbjct: 1093 ELK----DDGIGAFVVSSWFM-----DGKNPKTREYIVQNATFLGAIRLPNSVFKATGTE 1143

Query: 405  TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                +                K     GK+  I++ D  T    +  +        + +I
Sbjct: 1144 VSSDIVFFKKGVDEAIHQSFTKAMPYYGKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1201

Query: 453  LDIYVS---RENGKFSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLE 499
            ++   S    +  K  R    +D   FGY           + R    +  L++  L    
Sbjct: 1202 VNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYF 1261

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             +     L  L         +   +QIY Y       K    S        K  K
Sbjct: 1262 INHPENILGHLSLEKTRYSFEINGEQIYKYELQALENKSLDLSQALSQAIEKLPK 1316


>gi|307822928|ref|ZP_07653158.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
 gi|307735703|gb|EFO06550.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
          Length = 985

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 55/249 (22%)

Query: 208 TLYDPTCGTGGFLTDAMN----HVADCGS------------HHKIPPILV--PHGQELEP 249
            + DP+CG+G FL  A +    +  +                +    IL    +G ++  
Sbjct: 375 KVIDPSCGSGAFLVAAFDVFAPYYRELAQALRRLYPDTLEAFNGDRAILTHNLYGVDINA 434

Query: 250 ETHAVCVAGMLI------RRLES---------------DPRRDLSKNIQQGSTLSKDLFT 288
               +    + +       +L+S               D +   S      +T  K++  
Sbjct: 435 GAIEIAKLSLWLKTAKPGHKLDSLDGHLLCGNSLRFQPDSKSRWSSEHFGWNTTFKNILA 494

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   L NPP+          V  E                SD + L+       L L
Sbjct: 495 KGGFDVVLGNPPY----------VRMEVLKPFKPYLSANYAVASDRADLYAYFYEIGLRL 544

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYL 407
              GG    I  S+      + GSGE  +RR+LL+N  ++ +V      +F        +
Sbjct: 545 LKPGGCLGYISSSTFF----KTGSGEP-LRRYLLDNARLQTVVDFGDLQVFEGVTTYPAI 599

Query: 408 WILSNRKTE 416
             L   K E
Sbjct: 600 VCLEKGKAE 608


>gi|255034967|ref|YP_003085588.1| N-6 DNA methylase [Dyadobacter fermentans DSM 18053]
 gi|254947723|gb|ACT92423.1| N-6 DNA methylase [Dyadobacter fermentans DSM 18053]
          Length = 493

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH-VADCGSH 233
               TP  +V     +L       F E+    + + DP CG G FL       + +    
Sbjct: 15  GQVYTPFHIVD---KILGH---CGFYEADLSEKRMLDPACGNGRFLVPMAEFIIRNTPPD 68

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                +   HG +++ +    C     +  L +    ++  N+++   L K   +  +F 
Sbjct: 69  RVAERLQQLHGWDVDRKALQQCREN--LDALVAPLGLEIDWNLRKCDAL-KQWRSKDKFD 125

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             + NPP+ +     +   +   K+      G      +D  + F       L       
Sbjct: 126 LIIGNPPYIRIQHLPETQRKYIQKHYSFCSTG-----STDAFIAFFQLATRLL----APD 176

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           G   ++  +S L +   G     +R++  ++  +
Sbjct: 177 GLCGMITPNSFLVSESGGP----LRKYFYKHQNL 206


>gi|218132346|ref|ZP_03461150.1| hypothetical protein BACPEC_00205 [Bacteroides pectinophilus ATCC
            43243]
 gi|217992684|gb|EEC58686.1| hypothetical protein BACPEC_00205 [Bacteroides pectinophilus ATCC
            43243]
          Length = 2178

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 67/234 (28%), Gaps = 61/234 (26%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            +    ++   +       + +P+ G G F           GS          +G EL+  
Sbjct: 987  IAMCINSALVQFGFRGGNVLEPSMGIGNFF----------GSMPAPMQRSKLYGVELDSI 1036

Query: 251  THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 1037 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVVGNVPF---- 1074

Query: 306  EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                         G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 1075 -------------GDYKVFDP---KYNKYNFRIHDYFLAKALDQVRPGGMVAVITTKGTL 1118

Query: 366  FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                       IR++L E   +   + LP   F     T +   +  L  R+ +
Sbjct: 1119 DKANPT-----IRKYLAERAELVGAIRLPNTAFKDNAGTEVTADILFLQKRERK 1167


>gi|282859062|ref|ZP_06268194.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
 gi|282588142|gb|EFB93315.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
          Length = 1553

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|260170369|ref|ZP_05756781.1| N-6 DNA methylase [Bacteroides sp. D2]
 gi|315918728|ref|ZP_07914968.1| restriction endonuclease BseMII [Bacteroides sp. D2]
 gi|313692603|gb|EFS29438.1| restriction endonuclease BseMII [Bacteroides sp. D2]
          Length = 926

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 102/313 (32%), Gaps = 30/313 (9%)

Query: 119 DFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMS-NIYEHLIRRFGSEVSEG-AE 175
           +F +         L+     K    + L    +    +   I ++L++          A 
Sbjct: 280 NFGNIFGDNIANELISDNVWKQLVQLNLFISNIKIESVDIQILQNLLQSSIDYAKRKVAG 339

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--NHVADCGSH 233
            F TP  +  L T + ++  + +            DP CGTG  +  A       + G  
Sbjct: 340 QFATPPQLADLLTRITINNKNGITL----------DPCCGTGTIIKQAYSLKEEYEIGQD 389

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-- 291
             I  I          +   + ++         +  R    ++  G T  ++   G +  
Sbjct: 390 QIIESIWASDKYSFPIQLSTLSLSNPNNMGKTLNIFRSDVIDLHMGQTAFEEHNNGNQVE 449

Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                  Y +SN PF ++ E  K        N  +         +S  S     ++   L
Sbjct: 450 KKLPYVDYVVSNLPFIREKEIKKLNPNIGKINELIKEQTKAKNTLSKKSD-IFAYIPFYL 508

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL-FFRTNIA 404
               +  GR  ++LS++ L     G+   EI   L++    I+ +V       F    + 
Sbjct: 509 YNIISNNGRIGLILSNAWL-----GTDYGEIFLKLIQKYFNIDRVVVSGNGRWFNNAKVV 563

Query: 405 TYLWILSNRKTEE 417
           T L I + R+  +
Sbjct: 564 TTLLIATKREISD 576


>gi|168181781|ref|ZP_02616445.1| modification methylase family protein [Clostridium botulinum Bf]
 gi|237796546|ref|YP_002864098.1| modification methylase family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182675026|gb|EDT86987.1| modification methylase family protein [Clostridium botulinum Bf]
 gi|229262264|gb|ACQ53297.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 577

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 109/355 (30%), Gaps = 58/355 (16%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y   I+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYEFIK-----GKKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQELE 248
           +          + DP+CG G  L     ++ +            ++            L+
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWE 306
              +   +  + I+ L  D         +        L       F   + NPP+     
Sbjct: 137 NNLYGFDIDTIAIKILIIDLFYLTGYYNKNNFKKKDFLIEDINNNFDIYIGNPPYVGH-- 194

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +V+KE+      R+G       D S  F ++  N      N   +   + S   + 
Sbjct: 195 ---KSVDKEYSMLLKERYGYIYKDKGDISYCFFINALNY----SNINSKITFITSRYFME 247

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTEE--- 417
           +    +    +R++L EN  I  I+      F+         I   +  +    + +   
Sbjct: 248 SKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRNISNKVEI 298

Query: 418 ----RRGKV---QLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSREN 461
               R  KV      N  D +        + +    ++ DD  R I++   ++ N
Sbjct: 299 IKPCRYEKVKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDVSRDIINKIENKTN 353


>gi|21655249|gb|AAM49818.1| putative methylase [Borrelia hermsii]
          Length = 1048

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 31/201 (15%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-----DFSSTIARLEKAGLLYKICKNF 140
           + L+ L +T+        I  F  N  A+ +D      + +S+        +L ++    
Sbjct: 229 FFLAKLNNTSNSRIDFDNIKKFIPNNFALIQDILKLIDNIASSREYDSIRWVLEELIDIV 288

Query: 141 SGIELH--------------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + I+ +               D          YE  + ++   + +    + TP  VV+ 
Sbjct: 289 NNIDSNTIFEQFSFTQNVKSSDNNVKDPYLYFYEDFLAKYDKSLRKNKGVYYTPHSVVNF 348

Query: 187 AT----ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------ADCGSHH 234
                  +L          +     T+ D   GTG FL + +  +             + 
Sbjct: 349 IVSSLNKILKYNFGLENGFANREEVTVLDFATGTGTFLLEVIKCILKEIPKQTGKQKDYI 408

Query: 235 KIPPILVPHGQELEPETHAVC 255
               +   +G E     +AV 
Sbjct: 409 NDHILKNIYGFEYLMAPYAVA 429


>gi|87310600|ref|ZP_01092729.1| adenine specific DNA methyltransferase [Blastopirellula marina DSM
           3645]
 gi|87286821|gb|EAQ78726.1| adenine specific DNA methyltransferase [Blastopirellula marina DSM
           3645]
          Length = 744

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 115/405 (28%), Gaps = 66/405 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP------------DDALFKESPGMI 206
           +E  + +    +      + TP  V       +               DD+  K +   +
Sbjct: 14  FESRLAKSDDSLRRRHGVYYTPPVVAAAMIQAVDHGLKSQLGLPLGLADDSRRKGTDVPL 73

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCV 256
            ++ DP CG G FL  A+  +          P               G EL PE  A   
Sbjct: 74  VSILDPACGDGVFLEAAVRQIYQNYRSAGNEPSWPSAVHCTVLPRLFGCELFPEAAADAK 133

Query: 257 AGML--IRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKK---WEKDKD 310
             ++  +              I+ G  L++      + F   + NPP+        +   
Sbjct: 134 QRLIETLAETGVTDVTAEEIQIRIGDALAESTWSADEHFSVIVGNPPYSAAAALHGEWIK 193

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSML----FLMHL-ANKLELPPNGGGRAAIVLSSSPL 365
           ++     +     +      + +  +     ++      +  L  +G G  A + +   L
Sbjct: 194 SLMTGSGDPSRNYYQVAGEPLREKKLWLHDDYVQFFRLAQRHLDRSGVGILAFLTNHGYL 253

Query: 366 FNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQ 423
                      +R  LL   D I  +V L  +            +    K+E E   +  
Sbjct: 254 ----DNPTFRGMRWELLRGFDQIH-LVDLHGN------------VKKREKSETEPADENL 296

Query: 424 L-IN---ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--DYRTFGYRR 477
             I    A  L+T      +   +          D++ +R   K +R+            
Sbjct: 297 FAIEQGVAIGLFTKTSASSELATVRRG-------DLWGTRPT-KLARLAGEPLEEIAADE 348

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +    P       D+T     E  +   +L   + S  +     +
Sbjct: 349 LTPSAPYYFFMARDQTRTREYERGLPILELFAKYASAVVTARDKI 393


>gi|240948759|ref|ZP_04753131.1| hypothetical protein AM305_07728 [Actinobacillus minor NM305]
 gi|240296975|gb|EER47553.1| hypothetical protein AM305_07728 [Actinobacillus minor NM305]
          Length = 217

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 13/182 (7%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N     +D  FS      +     +        + L  +  P  V+   Y  L       
Sbjct: 34  NPFQDRDDRYFSIKSRYTDDEMYQFHQMGQIL-LNL-LEQKPQDVLGQCYMKL-----QI 86

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            ++      TP     +   +L+ P +   K       TL +PTCG+G  +      +  
Sbjct: 87  ANKQRGQCFTPISTGQVMANMLIAPSEINEKGY----FTLNEPTCGSGALIISFCETLKS 142

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G  +     L+   Q+++ ++  +C   + +  + +  +           T    L+  
Sbjct: 143 QG--YNPQQQLLVIAQDIDLKSVQMCYVQLSLLGISAIIQHANPIANNVIDTYYTPLYLL 200

Query: 290 KR 291
           +R
Sbjct: 201 QR 202


>gi|166365940|ref|YP_001658213.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166088313|dbj|BAG03021.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 1065

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 85/295 (28%), Gaps = 59/295 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT---------------------ALLLDPD 195
           + YE  +  + S++ E    + TP  VV                          + +   
Sbjct: 299 HFYETFLAEYDSKMRESRGVYYTPEPVVSYMVRSVDYILKNKFQIPKGLADAKKITIKNP 358

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHGQEL 247
           +   +        + DP  GTG FL   ++H+ D     K                G EL
Sbjct: 359 NNSQETQEVHQVLILDPAVGTGTFLHSVIDHIYDSFRQQKGMWSSYVSKHLLPRLFGFEL 418

Query: 248 EPETHAVCVA--GMLIRRLESDPRRDLSKNIQQGSTLSK-------DLFTGKRFH----- 293
               + V     G+ ++ L  D   D    I   +TL +       D F  +        
Sbjct: 419 LMAPYTVAHMKLGLQLQELGYDFSADERLGIYLTNTLQEAFQIPPADGFLNRIRDEAAAA 478

Query: 294 ----------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                       L NPP+  +       +    K+       P   +   G +   +   
Sbjct: 479 KDVKQEMPVMVILGNPPYSYQSMNTDPWIVNLVKDYYQLDGKPLGERNPKGLLDDYVKFI 538

Query: 344 N--KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              +  +   G G  A++ +   L           +R+ L++      ++ L  +
Sbjct: 539 RFAQYRVAETGYGVVALITNHGYL----DNPTFRGMRQNLMQTFDEIYVLDLHGN 589


>gi|290959568|ref|YP_003490750.1| hypothetical protein SCAB_51701 [Streptomyces scabiei 87.22]
 gi|260649094|emb|CBG72208.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1198

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 20/158 (12%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKES 202
           +    +   R ++++Y HL      +  + +    TP  VV L   L L+P  +A    +
Sbjct: 162 DFEDASRDTRFLADLYGHL----SDQDRKSSGQVSTPDFVVELIHDLTLEPALEAHGSTA 217

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------IPPILVPHGQELEPETHA 253
                 + DP CG+GGFL DA   +    S  +            +   HG +++P   +
Sbjct: 218 GPAGFRMIDPACGSGGFLLDAYARLCRRWSDARPDMSPWQRAARALASVHGCDIDPCAVS 277

Query: 254 VCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKD 285
           +    +L+  ++       D   D+   +  G  L  D
Sbjct: 278 ISRFRLLMAAMDVARARRLDDVPDIPLLVATGDALLHD 315


>gi|157826362|ref|YP_001494082.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia akari str. Hartford]
 gi|157800320|gb|ABV75574.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia akari str. Hartford]
          Length = 130

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 16/95 (16%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TPR+++     L+           P    T+YD  CG GG LT+ +N++ +  
Sbjct: 11  NNFGGYSTPRNIIKTIITLI----------DPKFGETVYDHFCGAGGVLTEVVNYIKENN 60

Query: 232 -----SHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                   +       +G+EL   T  +     ++
Sbjct: 61  IINTEEDLEKLMFNTLYGRELTKTT-RIAKMNTVL 94


>gi|47093444|ref|ZP_00231208.1| conserved domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47018172|gb|EAL08941.1| conserved domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 321

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 104 QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 158

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 159 QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 202

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 203 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK-- 252

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL     + +  K V L N + L
Sbjct: 253 --NGHIEGIIKLPETLFKSEQARKSILILQKADVDVKPPKEVLLANLSSL 300


>gi|330996127|ref|ZP_08320019.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329573839|gb|EGG55424.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 864

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVGSVLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKAIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQADLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|328541568|ref|YP_004301678.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
 gi|326415710|gb|ADZ72772.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
          Length = 1713

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F         D              G EL+P T  +         
Sbjct: 200 WRGGRVLEPGIGTGLFPALMPEEYRDS---------SYVTGVELDPVTARIVKL------ 244

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I +G     DL     +   + NPPF  +  +     ++++++  L  
Sbjct: 245 ------LQPKARIIEGDFARTDLSPI--YDLAIGNPPFSDRIVRS----DRQYRSLGLRL 292

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + +             + L+     G  AA V SS  L    + +     R  + +
Sbjct: 293 HDYFIARS-----------IDLLKP----GAFAAFVTSSGTLDKADSTA-----REHIAK 332

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +  + A + LP   F     T++   +     RK  E  G 
Sbjct: 333 SADLIAAIRLPEGSFRRDAGTDVVVDILFFRKRKAGEAEGD 373


>gi|315282518|ref|ZP_07870911.1| adenine-specific methyltransferase [Listeria marthii FSL S4-120]
 gi|313613835|gb|EFR87586.1| adenine-specific methyltransferase [Listeria marthii FSL S4-120]
          Length = 335

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 103/351 (29%), Gaps = 48/351 (13%)

Query: 83  TSEYSLSTLGSTNTRNNL--ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           T E       +     N    SY+ +  +  + +F+           EK   L    +++
Sbjct: 9   TQELFQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQKEEXXSEKQLKLQ---ESY 65

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             IEL   +  +         L      +        MTP  +  +   LL         
Sbjct: 66  DSIELENFSNEEIRKGLQLALLKGM---KHGIQVNHQMTPDSIGFIVAYLL------EKV 116

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                  ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  
Sbjct: 117 IQKKKNVSILDPACGTANLLTTVINQL-----ELKGNVEVHASGVDVDDLLISLALVGAD 171

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++R +                              +S+ P G          ++  K  E
Sbjct: 172 LQRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFE 215

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L R        S    LF+       +     GG    ++  +          +  I++ 
Sbjct: 216 LCR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK- 266

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
              N  IE I+ LP  LF        + IL       +  K V L N + L
Sbjct: 267 ---NGHIEGIIKLPETLFKTEQARKSILILQKADVNVKPPKEVLLANLSSL 314


>gi|225026192|ref|ZP_03715384.1| hypothetical protein EUBHAL_00433 [Eubacterium hallii DSM 3353]
 gi|224956443|gb|EEG37652.1| hypothetical protein EUBHAL_00433 [Eubacterium hallii DSM 3353]
          Length = 2231

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 74/259 (28%), Gaps = 59/259 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +       T   V+     +L        +        + +P+ G G F    
Sbjct: 1024 EEYAAARASTLNAHYTQPIVIESMYQVL--------ENLGFTKGNILEPSMGVGNFF--- 1072

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G   +       +G EL+  +  +         L  D    +    +      
Sbjct: 1073 -------GMLPENLNQSKLYGVELDSISGRIAKL------LYPDASILIKGFEKTD---- 1115

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               +    F   + N PFG     D+          +  R+          + +   +  
Sbjct: 1116 ---YPNDFFDVAIGNVPFGAYKVNDR----------QYDRY----------NFMIHDYFL 1152

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG AA++ +   +          E+R++L E   +   + LP   F     
Sbjct: 1153 AKTIDQLRPGGVAALITTKGTMDKASP-----EVRKYLAERADLLGAIRLPNTAFKANAG 1207

Query: 401  TNIATYLWILSNRKTEERR 419
            T ++T +     R++  + 
Sbjct: 1208 TEVSTDILFFQKRESFTKE 1226


>gi|148550647|ref|YP_001260086.1| hypothetical protein Swit_5209 [Sphingomonas wittichii RW1]
 gi|148503066|gb|ABQ71319.1| conserved hypothetical protein [Sphingomonas wittichii RW1]
          Length = 267

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL-LLDPDDAL 198
           F  I +  +  P  V+ +I+  L        ++    F TP  V  +   + L D  DAL
Sbjct: 74  FGEITMALEEAPGDVLGSIFTAL-----EIHNKNRGQFFTPYPVCQMMAQVTLGDAKDAL 128

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
                    +  +P CG G  +      +   G +++
Sbjct: 129 ALIDDKGFVSAMEPACGAGAMVIALAEAMRAAGINYQ 165


>gi|73669701|ref|YP_305716.1| type II restriction enzyme, methylase subunit [Methanosarcina
           barkeri str. Fusaro]
 gi|72396863|gb|AAZ71136.1| type II restriction enzyme, methylase subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 836

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 18/152 (11%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI-----ELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           FDF      L+       +   F  +           V  R++  IYE  + +    V++
Sbjct: 101 FDFIDDEFSLKFVINDEILVNIFKELYYPNSPYSFSVVDARILGEIYEMFLAKEAHIVNK 160

Query: 173 GA-------------EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +                 TP+ +V       + P              + D +CG+G F
Sbjct: 161 SSIEIVEKPEVIESRGIVPTPKYIVDAIIERTVKPKCEGKNPIELSQLKIADISCGSGSF 220

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           L     ++ +      I   +  H  EL   T
Sbjct: 221 LLATYEYLLNYYLEWYIQDGVEKHTNELFEHT 252



 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 15/177 (8%)

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           N    +   KD+     F   + NPP+     + ++ V+   K  E  +        ++ 
Sbjct: 349 NPFDWNNEFKDVIEKGGFDVIIGNPPY----VRIQNIVKYSPKEVEYYKSKYSPFVTANK 404

Query: 335 SMLF-LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +        + +   N  G    ++     F  ++G    E+RR +  N  +  IV  
Sbjct: 405 DNIDKYYLFIERAKYLLNSEGILGYIVPHKF-FKIKSG---QELRRLISSNKNLSEIVHF 460

Query: 394 P-TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRIIND 446
               +F      T + +L +++ +E   KV  ++  D W + +N   E  K   IN+
Sbjct: 461 GVEQVFGTKTTYTCILVLQSKELDEF--KVNFVSNIDDWRNGKNVQIEKYKSNYINE 515


>gi|302387900|ref|YP_003823722.1| helicase domain protein [Clostridium saccharolyticum WM1]
 gi|302198528|gb|ADL06099.1| helicase domain protein [Clostridium saccharolyticum WM1]
          Length = 2632

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 62/229 (27%), Gaps = 51/229 (22%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            ++       +        + DP  GTG F +   + +               +G E++P 
Sbjct: 958  IVSHIYKGLERMGFRGGNILDPALGTGNFFSVLPDSME----------SSKLYGCEIDPI 1007

Query: 251  THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
               +                       Q     K  F    F   + N PF      D  
Sbjct: 1008 PGQIAK-------------HLYPNADIQVMGFEKTAFPDHFFDMMVGNVPFNSIKVDD-- 1052

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                              P+ +  +     +   K       GG  A+V S   +    +
Sbjct: 1053 ------------------PRYNKHNFHIHDYFIAKSLDKVRPGGMMALVTSKFTMDKANS 1094

Query: 371  GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                  +RR++     +   V LP + F     T   T + +L  R+ E
Sbjct: 1095 S-----MRRYIAGKAELIGAVRLPNNAFKQVAGTEATTDILLLKKRERE 1138


>gi|116329163|ref|YP_798883.1| methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116121907|gb|ABJ79950.1| Methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 545

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 115/351 (32%), Gaps = 51/351 (14%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             ++    F TP  V       +L  +    +E    ++ + DP  G G F    ++ + 
Sbjct: 9   NKNKFLGQFFTPERVAGFLVDWILGAERITSQEG---LKRILDPAIGNGIFFESVLDKLP 65

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +  +           G +L+ +  +   + +  R  ++       ++             
Sbjct: 66  NLDAEW--------VGFDLDAQCLSASRSALENRISKASILSFYDRDFLL-------QKE 110

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L NPP+ K  +K+      +   G+  R  PG         L++  L   L L
Sbjct: 111 NQKFDAILCNPPYRKISDKNYSRELIQQFEGKSERKLPGTAN------LYVFFLLKCLNL 164

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIATY 406
             N GGRAA ++      +G        I+  L E+ L+ ++        LF     ++ 
Sbjct: 165 I-NVGGRAAFLVPQDFFNSGYG----VFIKSALQESGLLHSLFLFSPQDSLFDEAITSSC 219

Query: 407 LWILSNRKTEERRG-------KVQLINATDLWTSIRNEGKKRRIINDDQRRQ---IL--- 453
           + +L N + E++ G            + + L  S     +   I   D   +   I    
Sbjct: 220 ILLLENSEKEKKSGFYWTRLKPGFFSDTSKLPLSSVESIQTNWISFPDPEEKWSPIFHRL 279

Query: 454 --DIYV-----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
               Y        E  KF+  +    FG     +       F+  K  +  
Sbjct: 280 EKKTYTGEKKADFERKKFNHFVPLTEFGKFTRGIATGDNNFFLFTKEMVEA 330


>gi|46907813|ref|YP_014202.1| hypothetical protein LMOf2365_1604 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|217964270|ref|YP_002349948.1| N-6 DNA methylase [Listeria monocytogenes HCC23]
 gi|226224183|ref|YP_002758290.1| site specific DNA-methyltransferase [Listeria monocytogenes
           Clip81459]
 gi|254824359|ref|ZP_05229360.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852205|ref|ZP_05241553.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931522|ref|ZP_05264881.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|290894449|ref|ZP_06557408.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|300765992|ref|ZP_07075963.1| hypothetical protein LMHG_11690 [Listeria monocytogenes FSL N1-017]
 gi|46881082|gb|AAT04379.1| conserved domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217333540|gb|ACK39334.1| N-6 DNA methylase [Listeria monocytogenes HCC23]
 gi|225876645|emb|CAS05354.1| Putative site specific DNA-methyltransferase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605511|gb|EEW18119.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|290555987|gb|EFD89542.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293583076|gb|EFF95108.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593593|gb|EFG01354.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513310|gb|EFK40386.1| hypothetical protein LMHG_11690 [Listeria monocytogenes FSL N1-017]
 gi|307571163|emb|CAR84342.1| adenine-specific methyltransferase [Listeria monocytogenes L99]
 gi|328465080|gb|EGF36354.1| site specific DNA-methyltransferase [Listeria monocytogenes 1816]
 gi|332312024|gb|EGJ25119.1| N-6 DNA methylase domain protein [Listeria monocytogenes str. Scott
           A]
          Length = 332

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 115 QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 169

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 170 QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 213

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 214 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK-- 263

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL     + +  K V L N + L
Sbjct: 264 --NGHIEGIIKLPETLFKSEQARKSILILQKADVDVKPPKEVLLANLSSL 311


>gi|315608534|ref|ZP_07883519.1| DNA methylase [Prevotella buccae ATCC 33574]
 gi|315249782|gb|EFU29786.1| DNA methylase [Prevotella buccae ATCC 33574]
          Length = 1592

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 38/216 (17%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            +R   DP+ G G F   A       G         V    E +  T  +  A   +   
Sbjct: 125 QVRRCLDPSMGMGAF---AETFAKQAG---------VVDAMEKDLLTARISQA---LH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +       +      +L    ++    SN PFG     D    ++E+  G+    
Sbjct: 168 --PYGKGNIFVRNEPFEAIGELEDKDKYDLVTSNIPFG-----DFMVYDREYSKGKDTLK 220

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                 I +   +  +            GG  A + S   L + R  +    IRR+L++N
Sbjct: 221 RESTRAIHNYFFVKGLDCIK-------EGGLLAFITSQGVLDSPRNEA----IRRYLMQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
             + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 270 SRLISALRLPSGMFSDNAGTDVGSGLIVLQKQTGKE 305


>gi|187940164|gb|ACD39294.1| hypothetical protein PACL_0506 [Pseudomonas aeruginosa]
          Length = 1490

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 67/280 (23%), Gaps = 51/280 (18%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
             R A  E Y      +  L+   +      +         L    +R  L +    F+ 
Sbjct: 331 AARRAYAEGYALARLRDFCLKRRARTRHDDQWQAIRIVFRGLAQGESRLALPALGGLFAP 390

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI--- 163
                 +     +         L + +     G  L P    +     + ++YE L+   
Sbjct: 391 EQCPHLDIASLDNAHLLAALQHLRWAVVTQGKGSSLTPVDYRNMGPEELGSVYESLLELV 450

Query: 164 ------------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                                     +    + TP  +V       L+P       +   
Sbjct: 451 PSIDLPARTFGFVGRTEEGSTAGNARKLTGSYYTPDSLVQALIKSALEPVIEQRLAANPA 510

Query: 206 IR-------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------------- 241
                     + DP CG+G FL  A   +A+  +  +                       
Sbjct: 511 NPTAALLAIRVIDPACGSGHFLLAAARRLAEKLAQLRSLEGGQEGAIQPQDYRHALREVV 570

Query: 242 ---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +G +  P    +    + +   E         +  Q
Sbjct: 571 THCIYGVDRNPMAIELARMALWLEGFEEGRPLGFLDHHLQ 610


>gi|307296716|ref|ZP_07576535.1| restriction methylase [Sphingobium chlorophenolicum L-1]
 gi|306877845|gb|EFN09070.1| restriction methylase [Sphingobium chlorophenolicum L-1]
          Length = 615

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             ++++Y  L+     +       F TP  +      L  +               + DP
Sbjct: 125 HFLTSLYTTLLP---GKERSALGAFYTPPALTQRLLDLATEGGVD------WSTARVLDP 175

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-----PHGQELEPETHAVCVAGM--LIRRLE 265
             G G FL +A   +       +   IL        G EL+P    +  A +  L+  L 
Sbjct: 176 ASGGGAFLLEAAARMRRALEGSEPAFILAQLGTRLTGFELDPHAAGLSQAALEVLLADLC 235

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           +   R     ++   TL  +    + +   + NPP+G+
Sbjct: 236 AASGRAAPTFVKVCDTL--EATPAELYDLVVGNPPYGR 271


>gi|300854032|ref|YP_003779016.1| putative methyltransferase [Clostridium ljungdahlii DSM 13528]
 gi|300434147|gb|ADK13914.1| predicted methyltransferase [Clostridium ljungdahlii DSM 13528]
          Length = 557

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 67/285 (23%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +YE  + +   E  +    F TP  +V      ++   D   K++P +   + DP+
Sbjct: 9   ILGEMYERSMEK---EERKRKGSFYTPHYIVDYIVKNIMSNLD--LKKNPFI--KVLDPS 61

Query: 214 CGTGGFLTDAMNHVADC-----------------------------GSHHKIPPILVP-- 242
           CG+G FL      + +                              G H+     L    
Sbjct: 62  CGSGYFLVRVYEILMEKFSQNLETIRNTFNDKTYTIETEDGLKSIDGFHYWQQENLSFHI 121

Query: 243 -----HGQELEPETHAVCVAGML-IRRLESDPRRDLSKN--------------IQQGSTL 282
                +G +++     +    +  +  +  +   ++                  ++ +  
Sbjct: 122 LKKCIYGADIDSIAVELTKINLSKVSGININMEDNIICCNSLIKWNQIDNVEKYKESNIQ 181

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           S   F   ++ Y L NPP+     K+K  +E          +       +    L+   +
Sbjct: 182 SVVKFWNTKYDYVLGNPPWVSLSRKNKMNIEDGLLKYYSENYNGNTYLPN----LYEYFI 237

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              +E+    GGR   V+              SE+R+ LLEN  I
Sbjct: 238 KRSMEILKP-GGRFGFVVPD----RLSRNLQYSELRKSLLENYNI 277


>gi|271969041|ref|YP_003343237.1| type II DNA modification enzyme [Streptosporangium roseum DSM
           43021]
 gi|270512216|gb|ACZ90494.1| putative type II DNA modification enzyme [Streptosporangium roseum
           DSM 43021]
          Length = 1358

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 38/224 (16%)

Query: 144 ELHPDTVPDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLAT 188
           ++    +    + ++YE L+               +       +    + TP  ++    
Sbjct: 423 DVDFQHLGAEELGSVYESLLELVPHPDLAVPTFELKTVAGNDRKTTGSYYTPSSLIESLL 482

Query: 189 ALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCGSH----------- 233
              LDP      +S         T+ DP CG+G FL  A   +A   +            
Sbjct: 483 DTALDPVIDEHAKSGVADDLLKITVCDPACGSGHFLVAAARRIAKRYAAMVTGEAEPVPS 542

Query: 234 --HKIPPILV---PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLF 287
              K    +V    +G +++P    +    + +  LE   P   L  +I+ G++L     
Sbjct: 543 AVQKAMHKVVGTCIYGVDIQPLAAELAKFSLWMESLEPGKPLAFLDAHIKVGNSLL--GT 600

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           T +     + +  F      D+  V    K+    R   G+   
Sbjct: 601 TPRLLDDGIPDEAFKAIEGDDRKIVASLKKDNARQRRNQGMLFT 644


>gi|315652660|ref|ZP_07905637.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485104|gb|EFU75509.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 2509

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 88/287 (30%), Gaps = 68/287 (23%)

Query: 157  NIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             + E+L+   + +        F TP+ V+      L D               + +P+ G
Sbjct: 1553 FLKENLLPSEYEAAKESTLTAFYTPKVVIDAIYHTLSDMGFESGN--------ILEPSMG 1604

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            TG F+          G+          +G EL+  +  +               +    +
Sbjct: 1605 TGRFI----------GNLPLSMQNSKFYGIELDSISGQIAK-------------KLYPNS 1641

Query: 276  IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              Q     K  F+   F   + N PFG+    D++                        +
Sbjct: 1642 NIQVKGFEKTAFSNNLFDIAVGNVPFGEYRVSDREYE--------------------KNN 1681

Query: 336  MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             L   +   K       GG  A + SS  +          +IRR++ E       + LP 
Sbjct: 1682 FLIHDYFFAKTLDKVRNGGIIAFITSSGTMDKRN-----EDIRRYISERAEFLGAIRLPN 1736

Query: 396  DLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            ++F     T + + +  L        R ++  I+  + W  +  + K
Sbjct: 1737 NIFKDEAGTEVTSDIIFLKK------RDRLLKID--EDWVKLDKDRK 1775


>gi|296126920|ref|YP_003634172.1| hypothetical protein Bmur_1892 [Brachyspira murdochii DSM 12563]
 gi|296018736|gb|ADG71973.1| protein of unknown function DUF450 [Brachyspira murdochii DSM
           12563]
          Length = 1058

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 20/164 (12%)

Query: 94  TNTRNNLESYIASFSDNAKAIFED--FDFSSTI--ARLEKAGLLYKICKNFSGIELHP-- 147
            N   N  S +      A   +    FDF+       +E    + K   N     L P  
Sbjct: 307 DNKNENFYSNLLGIFKRADGKYNSGLFDFAKDTISGNIEIDNKVIKEIINELYYPLSPYE 366

Query: 148 -DTVPDRVMSNIYEHLIRRFGSEVS-------------EGAEDFMTPRDVVHLATALLLD 193
              +   +M N YE  + +  +                +    + TP  +V       + 
Sbjct: 367 FSVISVEIMGNAYEQFLGKTITIGRNHSAKIELKPEVRKAGGVYYTPEYIVDYIVENTVG 426

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
                 K        + DP CG+G FL  A  ++ +    +   
Sbjct: 427 EAIRGKKPEEIANIKILDPACGSGSFLLGAYKYLLNYHIEYYNK 470


>gi|167762748|ref|ZP_02434875.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC
           43183]
 gi|167699088|gb|EDS15667.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC
           43183]
          Length = 1938

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|294807381|ref|ZP_06766187.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445401|gb|EFG14062.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1938

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|294647085|ref|ZP_06724693.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
 gi|292637571|gb|EFF55981.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
          Length = 1464

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|282877664|ref|ZP_06286479.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
 gi|281300236|gb|EFA92590.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
          Length = 1433

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|53711433|ref|YP_097425.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|154490868|ref|ZP_02030809.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC
           43184]
 gi|189461180|ref|ZP_03009965.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136]
 gi|189464476|ref|ZP_03013261.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM
           17393]
 gi|198277329|ref|ZP_03209860.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135]
 gi|218131441|ref|ZP_03460245.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697]
 gi|237713347|ref|ZP_04543828.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|255012137|ref|ZP_05284263.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|262406723|ref|ZP_06083272.1| BmhA [Bacteroides sp. 2_1_22]
 gi|298377030|ref|ZP_06986984.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298483550|ref|ZP_07001726.1| DNA methylase [Bacteroides sp. D22]
 gi|313149979|ref|ZP_07812172.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|329960031|ref|ZP_08298527.1| helicase protein [Bacteroides fluxus YIT 12057]
 gi|46242803|gb|AAS83508.1| BmhA [Bacteroides fragilis]
 gi|52214298|dbj|BAD46891.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|154088616|gb|EDN87660.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC
           43184]
 gi|189432094|gb|EDV01079.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136]
 gi|189438266|gb|EDV07251.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM
           17393]
 gi|198269827|gb|EDY94097.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135]
 gi|217986373|gb|EEC52710.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697]
 gi|229446586|gb|EEO52377.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355426|gb|EEZ04517.1| BmhA [Bacteroides sp. 2_1_22]
 gi|298266014|gb|EFI07673.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298270307|gb|EFI11892.1| DNA methylase [Bacteroides sp. D22]
 gi|313138746|gb|EFR56106.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313158596|gb|EFR57990.1| helicase C-terminal domain protein [Alistipes sp. HGB5]
 gi|328533165|gb|EGF59934.1| helicase protein [Bacteroides fluxus YIT 12057]
          Length = 1938

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|294776631|ref|ZP_06742100.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|294449546|gb|EFG18077.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 1937

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|163868266|ref|YP_001609475.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017922|emb|CAK01480.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1653

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 109/401 (27%), Gaps = 55/401 (13%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++          +     G+   +NN    I+   D   
Sbjct: 770  DAFHKELKNNVNSEIKKEEAIEMLAQHLVTRPVFEALFDGNEFVQNN---AISQAMDKIL 826

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               +  +       L+K          F    +        ++  +YE    +   + ++
Sbjct: 827  TELDKTNIEEKTKDLDKFYKSVT----FCTAGITETHAKQNLIIKLYESFFAKAFKKTTD 882

Query: 173  GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP  VV      + D   +   K       ++ DP  GTG F+T  +       
Sbjct: 883  KLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSNLIKP 942

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM------LIRR----LESDPRRDLSKNIQQGST 281
               +       H  E+    + +    +      L++      +     D  + +++ + 
Sbjct: 943  EDMEYKFRHDIHANEIVLLAYYIAAINIETTYHSLMKGEYIPFKHIGLTDTFRMLEEKNL 1002

Query: 282  LSKDLFTGKRF---------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            L +       +              NPP+    + + D  +         R        S
Sbjct: 1003 LQELFKENSEYLEYQKKLDIKVIFGNPPYSVGQKNENDNAKNTPYPILDNRIRETYAAQS 1062

Query: 333  D-----GSMLFLMHLANKLELPPNGGGRAAIVLSSSPL------FNGRAGSGE------- 374
                        +          +  G    V  S  +         ++ + E       
Sbjct: 1063 KVTNIRALYDSYIRAIRWASDRIDNAGVIGFVSGSGYIDKPTMDSLRKSLAKEFTSIYVL 1122

Query: 375  ---SEIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWI 409
                +IR+ ++  +          ++F     T IA  L+I
Sbjct: 1123 NLRGDIRKNMMNKNN----AQEGENVFGNGSMTGIAVTLFI 1159


>gi|301308515|ref|ZP_07214469.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
 gi|300833985|gb|EFK64601.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
          Length = 252

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S+        F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKSGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MV-LCTD------SGETAAGKRICDPTCGSGRLLLAY--HVRHLGNY--------LIAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +      + V  ML+     +     S   +          T  R
Sbjct: 159 VSRTCCLMTVCNMLVHGCIGEVIHHDSLCPENFMDGWMVNHTLTR 203


>gi|270295247|ref|ZP_06201448.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274494|gb|EFA20355.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1937

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 76/244 (31%), Gaps = 50/244 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHSPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L  D +      ++       +      F   +
Sbjct: 157 KDLLT----------------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D +      ++   GR                 +   K       GG  
Sbjct: 195 SNIPFGDIAVFDAEF----QRSDSFGRR--------SAQKTIHNYFFLKGLDAVRDGGIV 242

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L   
Sbjct: 243 AFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQKN 297

Query: 414 KTEE 417
            +++
Sbjct: 298 LSKK 301


>gi|302346800|ref|YP_003815098.1| hypothetical protein HMPREF0659_A7061 [Prevotella melaninogenica
           ATCC 25845]
 gi|302150613|gb|ADK96874.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 1537

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVSAISDALASTNLQVRRCLDPSMGIGAF---AEAFAKQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      +L    ++    SN PFG     +  
Sbjct: 159 TARISQA---LH----PYGKGNIFVQSEPFEAIGELEDKDKYDLITSNIPFG-----EFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  +            GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRASTRAIHNYFFVKGLDCIK-------EGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE 305


>gi|227510222|ref|ZP_03940271.1| DNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227189874|gb|EEI69941.1| DNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 356

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 99/326 (30%), Gaps = 41/326 (12%)

Query: 131 GLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            L  +  K  S I  E   D      +    +  I +        A   +TP        
Sbjct: 70  DLTDENAKKVSRIYSEFDRDKYDSETLRKAIQMAILKAIRVDRIQANYQITP----DTIA 125

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++      +F     +  ++ DP  GTG  LT   N +        I       G E +
Sbjct: 126 NIVGYIISGIFNGQKQL--SMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIEND 178

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                +      I+ + ++   + +        +             +S+ P G      
Sbjct: 179 DAMFELAAGSFDIQHIHAELFHEDAIQNVLAPVV----------DIAVSDLPVGYYPI-- 226

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 E+  G   R   G          ++ HL  +  +     G     L  S +F  
Sbjct: 227 -----DENTKGFNTRSNDGHS--------YVHHLLIEFAMDHVKKGGYGFFLVPSQIFKT 273

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                  ++ +W+  N  ++ ++ LPT+LF        + IL N     ++    ++   
Sbjct: 274 SEA---KQLLKWMQGNVYLQGLLNLPTELFQNKASQKAIMILQNSGGNAKQASPIMLGEF 330

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILD 454
             +       K    I+D Q++ +L 
Sbjct: 331 PSFKDQPAFQKFLTEIDDWQKKDLLQ 356


>gi|294775987|ref|ZP_06741483.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450125|gb|EFG18629.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 246

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 17/120 (14%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  +    F TP  +  L              +     + + DPTCG+G  L     HV 
Sbjct: 98  KGQQAQGQFFTPVHICDLMV-------MCTETDGKKTGQRINDPTCGSGRLLLAY--HVR 148

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G++           +++      + +  MLI     +     S   +          T
Sbjct: 149 HLGNY--------LVAEDVNRTCCLMTICNMLIHGCVGEVIHHDSLCTENFMDGWMVNHT 200


>gi|169834613|ref|YP_001693403.1| hypothetical protein CLD_A0164 [Clostridium botulinum B1 str. Okra]
 gi|169123161|gb|ACA46996.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 972

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 88/547 (16%), Positives = 173/547 (31%), Gaps = 74/547 (13%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGS 93
           IL    +R L          +   Y  F G   +  E+ +K+A       S +S      
Sbjct: 182 ILRLIFIRFLIDR------GIDIGYDGFNGDIKESQEALLKLANNKRKLYSFFSYLKNKF 235

Query: 94  TNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                 LE   Y  + +D    + +   F S    +E   L +    +F+ I +      
Sbjct: 236 NGNLFELEDEVYDEALNDEVFELLKC--FLSGNQEMESGQLSFLPLYDFNIIPI------ 287

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++SNIYE L+     +  +    F TP  +           +      +      + D
Sbjct: 288 -ELISNIYEVLLGEKAQDDDKA---FYTPEYLADYIVK-----ESLGTFLTKDSQCKVLD 338

Query: 212 PTCGTGGFLTDAMNHVA----DCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLI 261
           P+CG+G FL +++  +     D   + K    L        +G +  PE   V +  + +
Sbjct: 339 PSCGSGIFLVESLQLIISKNVDDNGYIKDNDKLCQLIESNIYGVDSNPEAIDVTIFSLYL 398

Query: 262 RRLESDPRRDLS----KNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDK 309
              +    + L      N++  +    D F  +        +F + L NPP+G   E   
Sbjct: 399 TLFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNPPWGSVKEGLH 458

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                E+K  +         +IS            K++   N      +++ S   +N +
Sbjct: 459 SQYCDENKIPQY------RQEISRS-------FIAKVKEYSNEDTICCLIVPSKLFYNQK 505

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTD---LFFRTNIATYLWILSNRKTEERRGKVQLIN 426
             + E   R+ LL    I  IV L +    +F + +    + +  N        K+  + 
Sbjct: 506 KPAIE--FRKLLLLKCKILQIVELSSVRSLIFKKADAPAAILMFKNSTENCLSHKMLHL- 562

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
              L  ++  +      I     + I    + R +  +   +         I ++  L+ 
Sbjct: 563 --SLKPNMFFKIYHVIAIEKTDIKNIQQDILYRYDWAWKTCV---YGNSWDIDIITMLKR 617

Query: 487 SF--ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
            F  I D     +L+        +  + +        +        +  S         +
Sbjct: 618 KFPKIEDVINKNKLKTGAGITDTNGKYDAKDYIGKNMIESTAIDTLYFNSSNSSIFNKRK 677

Query: 545 AKTLKVK 551
              L  K
Sbjct: 678 IYRLGKK 684


>gi|254831983|ref|ZP_05236638.1| hypothetical protein Lmon1_11540 [Listeria monocytogenes 10403S]
          Length = 332

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 115 QKKKNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 169

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 170 QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 213

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 214 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAIFGTSDFAKVDKFIKK-- 263

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL       +  K V L N + L
Sbjct: 264 --NGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311


>gi|52001476|sp|P25239|T257_ECOLX RecName: Full=Type IIS restriction enzyme Eco57I; AltName:
           Full=Endonuclease Eco57I; Includes: RecName:
           Full=Adenine-specific methyltransferase activity
           Eco57IA; Short=M.Eco57IA
 gi|45157173|emb|CAA43434.3| endonuclease [Escherichia coli]
          Length = 998

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 117/447 (26%), Gaps = 85/447 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+++        +   +         ++      +    F    E        T    
Sbjct: 198 LFLKQINDWRLLLANEFLQIKNELPEEKLNDLVQNYINSIVFLRVCEDRDLEEYETLYHF 257

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEK--------AGLLYKICKN--FSGIELHPD 148
             +    S     K+   D  ++S +  LE            ++ I +   F        
Sbjct: 258 AQDKDFQSLVKKLKS--SDKKYNSGLFSLEYIDELLSNANSCIWSIIEQLYFPQSTYSFS 315

Query: 149 TVPDRVMSNIYEHLIR---RFGSEVSEGAED---------FMTPRDVVHLATALLLDPDD 196
                ++ NIYE  +    R     +   +            TP  +V       +    
Sbjct: 316 VFSSDILGNIYEIFLSEKVRIDELGNVKIQPKEEHIDRDVVTTPTHIVKEIIRNTVVEYC 375

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------- 241
               +   +     D  CG+G F+ +A   + D    + I                    
Sbjct: 376 KGKSDIEILNSKFADIACGSGAFIIEAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFE 435

Query: 242 ---------PHGQELEPETHAVCVAG-----------------------MLIRRLESDPR 269
                     +G + +      C  G                       +    L  +  
Sbjct: 436 VKREILCKCIYGIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSL 495

Query: 270 RDLSKNIQQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            D    ++Q    S + F  T  +F   + NPP+      ++       +     R    
Sbjct: 496 IDSGDKVKQEDIFSINPFDLTNYQFDVIVGNPPYMATEHMNQLT---PKELDIYKRKYKS 552

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K  D   LF+      L+      G    +L S  +          ++R++L EN  +
Sbjct: 553 AYKQFDKYFLFIERSIQILKEY----GYLGYILPSRFIKVDAG----KKLRKFLSENKYL 604

Query: 388 EAIVALPT-DLFFRTNIATYLWILSNR 413
             +++  +  +F      T L  L+  
Sbjct: 605 SKLISFGSHQVFKNKTTYTCLLFLNKE 631


>gi|301161275|emb|CBW20813.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 1828

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 87/283 (30%), Gaps = 72/283 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               S  +     F TP  VV            A  +E+  + + + DP+ G G F   +
Sbjct: 93  SYMQSLKNSVMTAFYTPAPVVREIA--------ASLREAGIVPKRILDPSAGMGEF-IRS 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + +A  G            G E +  T         +        +   +  ++  T  
Sbjct: 144 FDTIAAEGH--------TTFGFEKDILT---GQMLSALH----PKDKIRIRGFEEIETKL 188

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-----GSMLF 338
                   F    SN PF                 G++  F P   K ++       M  
Sbjct: 189 N-----GSFDVVSSNIPF-----------------GDVAVFDPVFSKTAESARKVARMSL 226

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +   K       GG  A + S   +    A S E  IR WL+ N  + + V LP +LF
Sbjct: 227 HNYFFVKGVDMLREGGVLAFITSQGVM---NAPSNEP-IREWLMNNSRLVSAVRLPNNLF 282

Query: 399 ---FRTNIATYLWILSNR--------------KTEERRGKVQL 424
                T + + L +L  +              K+E+R   V  
Sbjct: 283 SENAGTEVGSDLIVLQKQSDKTSLTEEEQRFIKSEKRPSGVLF 325


>gi|291086945|ref|ZP_06571733.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291076446|gb|EFE13810.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 2527

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/391 (14%), Positives = 119/391 (30%), Gaps = 78/391 (19%)

Query: 40   LLRR---LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
            + +R   +E +++  R   RE+ +A G      E+   V+  +      +  + L     
Sbjct: 822  VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAAQKKYNFHYN-LWEMEK 880

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRV 154
                  Y   ++ +A    +  +  + +A  E+  +L K       S      +   ++ 
Sbjct: 881  GGAKTRY--QWNMDAIRTLKQIESENRLATPEEQKVLSKFVGWGGLSQAFDEENAGWNKQ 938

Query: 155  MSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
             + + E L    + +  +     F T  ++            ++   +       + +P+
Sbjct: 939  YAELKELLSDEEYSAARATVNNAFYTSPEIA--------MCINSALVQFGFRGGNVLEPS 990

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDP 268
             G G F           GS          +G EL+  +  +       A + I   E   
Sbjct: 991  MGIGNFF----------GSMPAPMQRSKLYGVELDSISGRIAKQLYQNANISITGFE--- 1037

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                       +T   D F    F   + N PF                 G+   F P  
Sbjct: 1038 -----------NTTYPDNF----FDVVVGNVPF-----------------GDYKVFDP-- 1063

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             K +  +     +   K       GG  A++ +   L           IR+++ E   + 
Sbjct: 1064 -KYNKYNFRIHDYFLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYMAERAELV 1117

Query: 389  AIVALPTDLF---FRTNIATYLWILSNRKTE 416
              + LP   F     T +   +  L  R+ +
Sbjct: 1118 GAIRLPNTAFKDNAGTEVTADILFLQKRERK 1148


>gi|254414560|ref|ZP_05028326.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196178790|gb|EDX73788.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 1047

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/392 (13%), Positives = 99/392 (25%), Gaps = 65/392 (16%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                  T S            N   E F +    ++   +   L  L +T    +  S 
Sbjct: 205 FADMYAQTISYGLFAARVGHAQNPGSEGFTRRTAGTYIPATNPFLKRLFNTIVETDAVSQ 264

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I    D+   +    D SS +    +         +F                  YE  +
Sbjct: 265 IDWAIDDLVQLLAQVDMSSILENFGQRTRQDDPVVHF------------------YETFL 306

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATA------------LLLDPDDALFKESPGMIRTLYD 211
             +   + +    + TP  VV                  L   D+    ++      + D
Sbjct: 307 AAYNKALRKSRGVYYTPEPVVSFIVRSVDAILKERFNLPLGLADNTKDPKTQKPRVQILD 366

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVC--VAGM 259
           P  GTG FL + +  +        +                 G EL    +A+     G+
Sbjct: 367 PATGTGTFLYEVIKQIYRNLEDIGMANQWDSYVEENLLNRLFGFELLMAPYAIAHLKLGL 426

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFT---------------------GKRFHYCLSN 298
            ++ L    +      I   +TL + L                              L N
Sbjct: 427 ALQELGYQFKGKQRLGIYLTNTLDEALKKSEILFGQFVAQEANEASTVKQDTPVMVVLGN 486

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN--KLELPPNGGGRA 356
           PP+  +       +    ++           K   G     +      +  +   G G  
Sbjct: 487 PPYSYESLNTGKWISGLVRDYYKVDNKDLREKNPKGLQDDYVKFIRFAQWRIETTGYGIL 546

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           A + +   L N         + +   E  +++
Sbjct: 547 AFITNHGYLKNSTFRGMRQNLMQTFDEIYILD 578


>gi|319951791|ref|YP_004163058.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237]
 gi|319420451|gb|ADV47560.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237]
          Length = 1066

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/493 (12%), Positives = 131/493 (26%), Gaps = 116/493 (23%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  +   E  L    +++R     +       + +  +          +     G    +
Sbjct: 235 FLFIFFAEDRLLLPPNSIRSIVNQWTDLRDKYDEYFPLYDRFKKY---FGYMNTGHKGMQ 291

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +++ +Y          + +    +          LLYK     S  +     V   V+ +
Sbjct: 292 HDIFAYNGGLF-TPDEVLDKIKIND--------DLLYKHTVKLSNYDF-ESEVSVNVLGH 341

Query: 158 IYEHLIRRFGSEVS--------------EGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           I+EH +       +              +    F TP+ +        +       K   
Sbjct: 342 IFEHSLTEIEEIQNELEGIPHDGGKTKRKKEGVFYTPKYITKYIVDKTVGMLCEEKKFEL 401

Query: 204 GMIR--------------------------------TLYDPTCGTGGFLTDAMNHVADCG 231
            +                                  T+ DP CG+G FL  A+  +    
Sbjct: 402 DIQESEYEKERKGRQKSTLKKLTKKLEDYRKWLLQLTICDPACGSGAFLNQALEFLITEH 461

Query: 232 SHHKIPPILVP------------------HGQELEPETHAVCVAGMLIRRLE-SDPRRDL 272
            +       +                   +G ++  E   +    + +   E       L
Sbjct: 462 QYIDELQAKLFGDALVLSDIENVILENNIYGVDINEEAIEIAKLALWLHTAEKGRKLTSL 521

Query: 273 SKNIQQGSTLSKD-----------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           + NI+ G++L  D                 +F    F   + NPP+ +            
Sbjct: 522 NNNIKCGNSLIDDPNVAGHKAFNWQQEFPEVFARGGFDVVIGNPPYVQ-----------H 570

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            K  E   F     K+  G+    ++   K             +  ++  F       E 
Sbjct: 571 RKIFEFSNFFKSAYKVYTGTSDLSVYFFEKAFNILKKNSVLGYI--NTNKFFNTEYGKEL 628

Query: 376 EIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGKVQL----INATDL 430
              R  L    I  I+    + +F    +++ + I +  +       ++     INA   
Sbjct: 629 ---RDFLTKHNIHNIINFEQSAIFKDALVSSVILIATKEEPNNETNYIEFHKESINAEKF 685

Query: 431 WTSIRNEGKKRRI 443
              + N  +  ++
Sbjct: 686 QRELENRNRTIKL 698


>gi|189913148|ref|YP_001965036.1| Helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|189913483|ref|YP_001964711.1| Putative protein with DEAD/DEAH box helicase and with type III
            restriction enzyme motif [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Paris)']
 gi|167777824|gb|ABZ96123.1| Helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781551|gb|ABZ99847.1| Putative protein with DEAD/DEAH box helicase and with type III
            restriction enzyme motif [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Paris)']
          Length = 1647

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/434 (14%), Positives = 116/434 (26%), Gaps = 52/434 (11%)

Query: 48   LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
            +E       E       S  D E    +A +        +L        +N +   +   
Sbjct: 770  IEAFHDFAEELRDDLNDSITDEEVVEMLAQHLITKPVFDALFQNEEFTKQNAVSKAM--- 826

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             DN   I ++         L++     K+    SGI         +++  +Y+       
Sbjct: 827  -DNILGILQEHHLEKERDTLQRFYESVKM--RASGI--TNAEGRQKIILELYDKFFSNAF 881

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             ++SE      TP + V      + D        +       + DP  GTG FLT  M  
Sbjct: 882  PKLSERLGIVYTPVEAVDFILHSVADVLQSEFGLQFGDDSVQVLDPFTGTGTFLTRLMQS 941

Query: 227  VADCGSHHKIPPILVPHGQELEPETHAVCVAG------------------MLIRR-LESD 267
                            H  E+    + +                      ML+    +  
Sbjct: 942  GLLTKEELIRKYKNGLHANEIVLLAYYIASINIESTYHTVTGEPYTPFGGMLLTDTFQLF 1001

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             + D+  +    ++  +     +     + NPP+        D  +     G   R    
Sbjct: 1002 EKDDMISHFLPDNSERRMKQKSQNVQVIVCNPPYSAGQTSANDNNQNVKYPGLDSRIEAT 1061

Query: 328  LPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
              K S  S+   ++                 G    + ++S +           +R+ L 
Sbjct: 1062 YAKHSKASLQKNLYDSYIRAIRWASDRIGDSGVMGFITNASFIEANAMDG----LRKCLQ 1117

Query: 383  ENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINA 427
            E      I  L  +              LF   +     + I       +  GK+ L + 
Sbjct: 1118 EEFSTLYIFHLRGNQRTSGELSRKEGGKLFGSGSRAPIAITIFVKNPKAKESGKIFLHDI 1177

Query: 428  TDLWTSIRNEGKKR 441
             D  T  +   K  
Sbjct: 1178 GDYLTREQKLEKLN 1191


>gi|52081439|ref|YP_080230.1| putative RNA methylase YtxK [Bacillus licheniformis ATCC 14580]
 gi|52786814|ref|YP_092643.1| YtxK [Bacillus licheniformis ATCC 14580]
 gi|319647347|ref|ZP_08001569.1| YtxK protein [Bacillus sp. BT1B_CT2]
 gi|52004650|gb|AAU24592.1| putative RNA methylase YtxK [Bacillus licheniformis ATCC 14580]
 gi|52349316|gb|AAU41950.1| YtxK [Bacillus licheniformis ATCC 14580]
 gi|317390694|gb|EFV71499.1| YtxK protein [Bacillus sp. BT1B_CT2]
          Length = 328

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 40/222 (18%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGM 259
                 TL+DP  GTG  L   +N +A+              G E++     +    A +
Sbjct: 113 ERKKGLTLFDPAVGTGNLLLAVLNQLAEEAGKA--------FGSEIDDVLIKLAYVQANL 164

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             + +E   +  L     +                 + + P G  +  D+ A   E K  
Sbjct: 165 QEKEIELFNQDSLQPIFMEH------------ADAVICDLPVG-YYPDDESARAFELKAD 211

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E   F                    +       GG    ++ +    +G++     ++R 
Sbjct: 212 EGHSF-------------SHHLFIEQSLTYTKPGGYLFFMIPNHLFESGQS----EKLRT 254

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +L  N  I A++ LP  +F     A  + +L     + +  K
Sbjct: 255 FLKNNAHINAVLQLPLSIFKDEAHAKSILVLQKHGEQAKAPK 296


>gi|256649300|dbj|BAI15241.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-32]
          Length = 1362

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 94/328 (28%), Gaps = 46/328 (14%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYD 211
            +V+  +Y+   +    ++ E      TP +VV      + D  +  F ++       + D
Sbjct: 745  KVIKELYDGFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMD 804

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR-- 263
            P  GTG F+T  +          +       H  E+    + +    +      L+    
Sbjct: 805  PFTGTGTFITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAY 864

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLF---TGKRFH--YCLSNPPFGKKWEKDKDAV 312
                    +D  R    +   GSTL  +       K+      + NPP+    E   D  
Sbjct: 865  EPFEGICLTDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNN 924

Query: 313  EKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +         R      + S  +         +             G    V ++  L  
Sbjct: 925  QNVSYPALDERIAKTYAERSTATNKRALYDSYIRAIRWASDRIGNCGVLGFVTNAGFLDA 984

Query: 368  GRAGSGESEIRRWLLEND-LIEAIVALPTD--------------LF-FRTNIATYLWILS 411
              A      +R+ L E    I  +  L  +              +F   +     + I+ 
Sbjct: 985  NTANG----LRQCLAEEFSSIH-VFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMV 1039

Query: 412  NRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +G++   +  D  T  +    
Sbjct: 1040 KNPDAKEQGRILFHDIGDYLTREQKLKH 1067


>gi|226322845|ref|ZP_03798363.1| hypothetical protein COPCOM_00617 [Coprococcus comes ATCC 27758]
 gi|225208826|gb|EEG91180.1| hypothetical protein COPCOM_00617 [Coprococcus comes ATCC 27758]
          Length = 1023

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 75/260 (28%), Gaps = 69/260 (26%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +       T   V+     +L        +    +   + +P+ G G F    
Sbjct: 174 EEYAAARASTLNAHYTQPIVIESMYQVL--------ENLGFIKGNILEPSMGVGNFF--- 222

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                  G   +       +G EL+  +  +       A + I+  E             
Sbjct: 223 -------GMLPENLNQSKLYGVELDSISGRIGKLLYPDANIQIKGFE------------- 262

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                K  +    F   + N PFG     D+          +  R+          + + 
Sbjct: 263 -----KTDYPNDFFDVAIGNVPFGAYKVNDR----------QYDRY----------NFMI 297

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +   K       GG AA++ +   +          E+R++L E   +   + LP   F
Sbjct: 298 HDYFLAKTIDQLRPGGVAALITTKGTMDKASP-----EVRKYLAERADLLGAIRLPNTAF 352

Query: 399 ---FRTNIATYLWILSNRKT 415
                T ++  +     R++
Sbjct: 353 KANAGTEVSADILFFQKRES 372


>gi|254487192|ref|ZP_05100397.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101]
 gi|214044061|gb|EEB84699.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101]
          Length = 553

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 82/245 (33%), Gaps = 39/245 (15%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F S   +    F T + +  L  A                  T+ +P+ G  GFL  
Sbjct: 1   MRTFDSRRKKDLGAFYTHQGLTDLICA----------WSVQTPETTVLEPSFGGCGFLRS 50

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + +A  GS      I   +G +++        A +L+  +   P      +       
Sbjct: 51  TRDRLAKIGS---TSSISQIYGCDIDT------RAFLLLSDVFEQPVDLERYHEGDFLDQ 101

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  K F   + NPP+     +  D   +E    +L   G  L + +        + 
Sbjct: 102 RFPSSWPKTFDAVVGNPPYLP--YRKIDVSRRERVLDQLKDLGLTLDRRAS----LWAYF 155

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI--------------RRWLLENDLIE 388
                   + GGRAA VL SS L+   + +  S I              R++LLE    +
Sbjct: 156 VALSIPFTSTGGRAAWVLPSSFLYANFSAALRSFITENFEEVRAFELKERQFLLEGTEEK 215

Query: 389 AIVAL 393
            +V L
Sbjct: 216 TVVLL 220


>gi|120536967|ref|YP_957025.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326801|gb|ABM21110.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 2570

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 69/228 (30%), Gaps = 53/228 (23%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            L+ P           +  + +P+CG G F                 P +    G EL+  
Sbjct: 918  LIGPMWEALDRMGLPLNRVLEPSCGIGNF--------KAFMPESVAPKVKSFTGIELDRY 969

Query: 251  THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            T  +  A         D R   S   +         F    F   +SN PF         
Sbjct: 970  TARLAQAA------HPDARILQSGFERT-------SFPDSFFDTVISNIPF--------- 1007

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNG 368
                    G+ G F P  P+         +H A  L+       GG  A + S+  L   
Sbjct: 1008 --------GDYGMFDPEHPERRTT-----IHNAFFLKGLDKVRPGGVVAFITSAYVL--- 1051

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                 ++ +R+ +++   +     LP   F     T + T +  L  +
Sbjct: 1052 --DGKDTAVRKEIMDRAHVMGTYRLPAGTFEKTTGTEVVTDVIFLQKK 1097


>gi|120435726|ref|YP_861412.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117577876|emb|CAL66345.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 991

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 100/311 (32%), Gaps = 32/311 (10%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
            K+I+   +++ LE           E+  + G S+ + + F K      +       S +
Sbjct: 193 KKIIIQAIMIKYLE-----------ERKDSDGNSSFNQKYFRKYGNCKEFVDVLSRGSFV 241

Query: 92  GS-TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPD 148
               + +++L   +  +    K +    D S  +  L+              +       
Sbjct: 242 ALLDDLQHDLNGNLFDWKPQEKELIPSLDLSGLVEALKAYKTPEDSHNEILELIRYYEFS 301

Query: 149 TVPDRVMSNIYEHLIRR-----FGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKES 202
            +P  ++S IYE  +       F  +  +     F TP  +  L    ++      FK+ 
Sbjct: 302 YIPVELISRIYEEFLAGGDDALFSQKEKKQKDGIFYTPSHLAQLLVDEIMPLHQ--FKDI 359

Query: 203 PGMIRTLYDPTCGTGGFLTDAMN---HVADCGSHHKIPPILV-------PHGQELEPETH 252
                 + DP CG+G FL  A           +  K P I          +G + E E  
Sbjct: 360 DIKGFKILDPACGSGIFLVLAFKRLVQWWRLQNDLKKPDIQTLKDILDCIYGIDKEFEAT 419

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    + +   +    + +   ++        +     F   L + P G    K + + 
Sbjct: 420 KLAAFSLCLALCDELSPKQIINELKFSDLTDNQILHSDFFIEHLLSLPGGDNDLKKQQSN 479

Query: 313 EKEHKNGELGR 323
            K+ K  +  R
Sbjct: 480 FKKLKGIKFSR 490


>gi|218128937|ref|ZP_03457741.1| hypothetical protein BACEGG_00509 [Bacteroides eggerthii DSM 20697]
 gi|217988900|gb|EEC55217.1| hypothetical protein BACEGG_00509 [Bacteroides eggerthii DSM 20697]
          Length = 252

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 19/162 (11%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S+        F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKSGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
                   + A+        + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MVLCTDSGETAI-------GKRICDPTCGSGRLLLAY--HVRHLGNY--------LVAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +      + V  ML+     +     S   +          T
Sbjct: 159 VSRTCCLMTVCNMLVHGCIGEVIHHDSLCPENFMDGWMVNHT 200


>gi|309704637|emb|CBJ03987.1| putative type II restriction enzyme [Escherichia coli ETEC H10407]
          Length = 1004

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/447 (13%), Positives = 118/447 (26%), Gaps = 85/447 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+++        +   +         ++      +    F    E        T    
Sbjct: 198 LFLKQINDWRLLLANEFLQIKNELPEEKLNDLVQNYINSIVFLRVCEDRDLEEYETLYHF 257

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEK--------AGLLYKICKN--FSGIELHPD 148
             +    S     K+   D  ++S +  LE            ++ I +   F        
Sbjct: 258 AQDKDFQSLVKKLKS--SDKKYNSGLFSLEYIDELLSNANSCIWSIIEQLYFPQSTYSFS 315

Query: 149 TVPDRVMSNIYEHLIRR------FGSEVSEGAEDF------MTPRDVVHLATALLLDPDD 196
                ++ NIYE  +         G+   +  E+        TP  +V       +    
Sbjct: 316 VFSSDILGNIYEIFLSEKVRVDELGNVKIQPKEEHIDRDVVTTPTHIVKEIIRNTVVEYC 375

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------- 241
               +   +     D  CG+G F+ +A   + D    + I                    
Sbjct: 376 KGKSDIEILNSKFADIACGSGAFIIEAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFE 435

Query: 242 ---------PHGQELEPETHAVCVAG-----------------------MLIRRLESDPR 269
                     +G + +      C  G                       +    L  +  
Sbjct: 436 VKREILCKCIYGIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSL 495

Query: 270 RDLSKNIQQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            D    ++Q    S + F  T  +F   + NPP+      ++       +     R    
Sbjct: 496 IDSGDKVKQEDIFSINPFDLTNYQFDVIVGNPPYMATEHMNQLT---PKELDIYKRKYKS 552

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K  D   LF+      L+      G    +L S  +          ++R+ L EN  +
Sbjct: 553 AYKQFDKYFLFIERSIQILK----DHGYLGYILPSRFIKVDAG----KKLRKLLSENKYL 604

Query: 388 EAIVALPT-DLFFRTNIATYLWILSNR 413
             +++  +  +F      T L  L+  
Sbjct: 605 SKLISFGSHQVFKNKTTYTCLLFLNKE 631


>gi|237727382|ref|ZP_04557863.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|255008834|ref|ZP_05280960.1| type I restriction enzyme, M subunit [Bacteroides fragilis 3_1_12]
 gi|313146578|ref|ZP_07808771.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|229434238|gb|EEO44315.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|313135345|gb|EFR52705.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 239

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 21/111 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                +Y   +        +    F TP  +  L                    + + DP
Sbjct: 85  DAFGELY---MAYCSKPGQQANGQFFTPSHICELMV--------MCAAGKKETGQRMGDP 133

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           TCG+G  L     H           P     G+++      + V  ML+  
Sbjct: 134 TCGSGRLLLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHG 174


>gi|303237812|ref|ZP_07324370.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302482037|gb|EFL45074.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 2068

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 65/430 (15%), Positives = 134/430 (31%), Gaps = 86/430 (20%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK------IPPILVPHG 244
           ++             IR   DP+ G G F            +  K      I   + P+G
Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAFTETFAKRAGMVDAMEKDLLTARISQSIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R              Q+      +L   +++    SN PFG  
Sbjct: 171 Q-----------GNIIVR--------------QEPFEAIGELEDKEKYDLITSNIPFG-- 203

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D    ++E+  G+            + +     +   K       GG  A + S   
Sbjct: 204 ---DFMVYDREYSKGKD-------ILKRESTRAIHNYFFVKGLDCIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           L + R  +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    
Sbjct: 254 LDSPRNEA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE---- 305

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--------DYRTF 473
                                 I++   +Q ++     +    S +         D++  
Sbjct: 306 ----------------------ISEGIEQQFVETLSVPKEEGSSVVFKHNSLFAGDWKDI 343

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            +R I   R +            R +  I       +     L++ +   +++Y  G   
Sbjct: 344 AHRIIATERTMGTDPYGKPAWEYRFDGSIDDM-AKSIRTQLSLEVEQRFDRKLYETGIPM 402

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
           +  +   K  E +  K+  + +            D   + + D   + +P    TE E +
Sbjct: 403 TEEERQ-KEAEKQLRKLGITVNLPKEDPKVHKEADNAYNLMPDSIRKRLPKLYSTEKELI 461

Query: 594 PYLESIQDYF 603
               +   YF
Sbjct: 462 GDKVAYARYF 471


>gi|167647764|ref|YP_001685427.1| helicase-like protein [Caulobacter sp. K31]
 gi|167350194|gb|ABZ72929.1| helicase-like protein [Caulobacter sp. K31]
          Length = 1176

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 101/332 (30%), Gaps = 71/332 (21%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           T+ R+++     ++   F  I+          ++  YE  +  F  ++ E    + TP +
Sbjct: 310 TLNRVDRPLFRSRMT--FPTID---GETSIAAITYFYEPFLEAFDPKLREDLGVWYTPPE 364

Query: 183 VVHLATALLLDPDDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           +V      +          + G+      + DP CGTG +L +    +A+          
Sbjct: 365 IVRYQVRRVHHLLKTELGRARGLADPDVIVLDPCCGTGAYLLEVARCIAEELISEGDADT 424

Query: 240 LVPH----------GQELEPETHAVCVAGML------------IRRLESDPRRDLSKNIQ 277
           +             G E+     A+    +              RRL       LS    
Sbjct: 425 VGLELTSAFQHRVIGFEILTAPFAIAQLQLYLLLEQLGAKPDPTRRLAVFLTNALSGWKN 484

Query: 278 QGSTLSKDLFTGKRFH------------YCLSNPPFGK-------------KWEKDKDAV 312
            G            F               + NPP+ +                K  + V
Sbjct: 485 HGDVKLNFPEMRDEFDASQQVKRDARIIVVIGNPPYDRFTGAAQAEEAELVAHYKGVELV 544

Query: 313 EKEHKNG--ELGRFGPGLPKISDGSMLFLMHLANK----------LELPPNGGGRAAIVL 360
           E++ K+G  +L RFG  L K    S+L+      K          L L     G AA   
Sbjct: 545 EQKTKDGSVKLDRFGQPLMKQRGSSLLYEEFGVRKQLLDDLYVRFLRLAEERIGIAADYG 604

Query: 361 SSSPLFNGR--AGSGESEIRRWLLENDLIEAI 390
             S + N     G     +RR LL +    A+
Sbjct: 605 VVSFISNSSYLTGRSHPLMRRSLLSSF--HAV 634


>gi|237704018|ref|ZP_04534499.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|20068986|gb|AAM09640.1|AF458982_3 m6 adenine DNA methyltransferase [Escherichia coli]
 gi|226901930|gb|EEH88189.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|281181426|dbj|BAI57756.1| methyltransferase [Escherichia coli SE15]
 gi|315286889|gb|EFU46306.1| type II restriction m6 adenine DNA methyltransferase,
           Alw26I/Eco31I/Esp3I family [Escherichia coli MS 110-3]
          Length = 546

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 33/271 (12%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +        +    + T   +  L    LL   ++  K+S      + DP  G G  +T 
Sbjct: 18  LDETTKFTKKATGKYYTDPKIALLMIEKLLPLINSCDKKSYN----VADPFSGDGRLITL 73

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHA-VCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +           +   +     E    T+A   ++ + +         +++  I+    
Sbjct: 74  LIKQW-MINGFPDVEWNVYLFDIENTGLTYAKNALSELKLAG------ANINITIKNSDV 126

Query: 282 LSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHK----------NGELGRFGPGLP 329
             +       F   ++NPP+   K   ++ D  E   K          +  L R  P   
Sbjct: 127 FYEFKKYVDYFDCVITNPPWENIKPDSRELDFFEPSMKSMYIDSLREFDDYLSRVLPYSQ 186

Query: 330 KISD--GSMLFLMHLANKLELPP-NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                 G    L  +  +L L   N  G  AIV+ +S   + ++      +R     +  
Sbjct: 187 PKRKFAGWGTNLSRVGAELSLEICNKNGLVAIVMPASFFADEQS----YILREKFFNSGR 242

Query: 387 IEAIVALP--TDLFFRTNIATYLWILSNRKT 415
           I+ I   P    LF   ++++  +I +  ++
Sbjct: 243 IDCINYYPAEAKLFGGADVSSCSFIFNKGES 273


>gi|261884258|ref|ZP_06008297.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 39

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + ++ ++YE+LI  F S   +   +F TP +V  L
Sbjct: 5   NDIIGDVYEYLIAHFASNAGKKGGEFYTPSEVSTL 39


>gi|256655344|dbj|BAI21271.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-12]
          Length = 1352

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 94/328 (28%), Gaps = 46/328 (14%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYD 211
            +V+  +Y+   +    ++ E      TP +VV      + D  +  F ++       + D
Sbjct: 745  KVIKELYDGFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMD 804

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR-- 263
            P  GTG F+T  +          +       H  E+    + +    +      L+    
Sbjct: 805  PFTGTGTFITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAY 864

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAV 312
                    +D  R    +   GSTL  +    ++         + NPP+    E   D  
Sbjct: 865  EPFEGICLTDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNN 924

Query: 313  EKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +         R      + S  +         +             G    V ++  L  
Sbjct: 925  QNVSYPALDERIAKTYAERSTATNKRALYDSYIRAIRWASDRIGNCGVLGFVTNAGFLDA 984

Query: 368  GRAGSGESEIRRWLLEND-LIEAIVALPTD--------------LF-FRTNIATYLWILS 411
              A      +R+ L E    I  +  L  +              +F   +     + I+ 
Sbjct: 985  NTANG----LRQCLAEEFSSIH-VFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMV 1039

Query: 412  NRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +G++   +  D  T  +    
Sbjct: 1040 KNPDAKEQGRILFHDIGDYLTREQKLKH 1067


>gi|16800685|ref|NP_470953.1| hypothetical protein lin1617 [Listeria innocua Clip11262]
 gi|16414104|emb|CAC96848.1| lin1617 [Listeria innocua Clip11262]
          Length = 332

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +   G        +   G +++    ++ + G  +
Sbjct: 115 QKKKNVSILDPACGTANLLTTVINQLGLKGD-----VDVHASGVDVDDLLISLALVGADL 169

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 170 QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 213

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 214 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK-- 263

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL     + +  K V L N + L
Sbjct: 264 --NGHIEGIIKLPETLFKSEQARKSILILQKADVDVKPPKEVLLANLSSL 311


>gi|227513150|ref|ZP_03943199.1| adenine-specific methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227083725|gb|EEI19037.1| adenine-specific methyltransferase [Lactobacillus buchneri ATCC
           11577]
          Length = 356

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 101/324 (31%), Gaps = 45/324 (13%)

Query: 131 GLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            L  +  K  S I  +   D      +    +  I +        A   +TP        
Sbjct: 70  DLTDENAKKVSRIYSKFDRDKYDSETLRKAIQMAILKAIRVDRIQANYQITP----DTIA 125

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++      +F     +  ++ DP  GTG  LT   N +        I       G E +
Sbjct: 126 NIVGYIISGIFNGQKRL--SMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIEND 178

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                +      I+ + ++   + +        +             +S+ P G      
Sbjct: 179 DAMFELAAGSFDIQHIHAELFHEDAIQNVLAPVV----------DIAVSDLPVGYYPI-- 226

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 E+  G   R   G          ++ HL  +  +     G     L  S +F  
Sbjct: 227 -----DENTKGFNTRSNDGHS--------YVHHLLIEFAMDHVKKGGYGFFLVPSQIFKT 273

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                  ++ +W+  N  ++ ++ LPT+LF        + IL N     ++    ++   
Sbjct: 274 SEA---KQLLKWMQGNVYLQGLLNLPTELFQNKASQKAIMILQNSGGNAKQASPIML--- 327

Query: 429 DLWTSIRNEGKKRRIIND-DQRRQ 451
             + S +++   +R + + D  ++
Sbjct: 328 GEFPSFKDQPAFQRFLTEIDDWQK 351


>gi|269926870|ref|YP_003323493.1| hypothetical protein Tter_1765 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790530|gb|ACZ42671.1| conserved hypothetical protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1098

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 103/347 (29%), Gaps = 47/347 (13%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT---RNNLESYIASFSDNAKAIFEDFD-- 119
            ++  E F  +   +      ++   +G T T   R      +   +   +  F+     
Sbjct: 216 PDLQPEDFADMYAQTIAY-GLFTARIMGDTATTFNRYMAAHMLPRTNPFLRQFFDAITGP 274

Query: 120 -FSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             SS +  +  A        + + I  +    T  +  + + YE  +  +  +V E    
Sbjct: 275 GLSSAVDWIVDAIADLLSVADMAAIMRDFGRATRQEDPVVHFYETFLAEYDPKVREMRGV 334

Query: 177 FMTPRDVVHLATALLLDPDDALFKESP---GMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           + TP  VV      +       F +          + DP  GTG FL DA+  V +    
Sbjct: 335 YYTPEPVVSYIVRSVDRLLQEHFGQEHGLADPNTIVLDPATGTGTFLYDAILRVHESLLS 394

Query: 234 HKIPPILVPH----------GQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGST 281
             +  +   +          G EL    +AV    +  L+R    +        +   +T
Sbjct: 395 RGLGGLWQGYVAERLIPRIFGFELLMAPYAVAHLKLSWLLRETGYNLDGSERIGVYLTNT 454

Query: 282 LSK---------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           L++                     ++   K     L NPP+        + +    ++  
Sbjct: 455 LAEAVQASPLPFAEYISQEANAAAEIKRDKPIMVVLGNPPYSGHSANRGEWIGNLLRDYY 514

Query: 321 LGRFGPGLPKISDGSMLFLMHLAN--KLELPPNGGGRAAIVLSSSPL 365
                P   +         +      +  +   G G  A + + S L
Sbjct: 515 QVDGKPLGERNPKWLQDDYVKFIRFGQWRINRTGQGILAYISNHSYL 561


>gi|16803622|ref|NP_465107.1| hypothetical protein lmo1582 [Listeria monocytogenes EGD-e]
 gi|224501478|ref|ZP_03669785.1| hypothetical protein LmonFR_03007 [Listeria monocytogenes FSL
           R2-561]
 gi|254828183|ref|ZP_05232870.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898251|ref|ZP_05258175.1| hypothetical protein LmonJ_00510 [Listeria monocytogenes J0161]
 gi|254912256|ref|ZP_05262268.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936583|ref|ZP_05268280.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255027153|ref|ZP_05299139.1| hypothetical protein LmonocytFSL_13938 [Listeria monocytogenes FSL
           J2-003]
 gi|255029398|ref|ZP_05301349.1| hypothetical protein LmonL_10333 [Listeria monocytogenes LO28]
 gi|284801973|ref|YP_003413838.1| hypothetical protein LM5578_1728 [Listeria monocytogenes 08-5578]
 gi|284995115|ref|YP_003416883.1| hypothetical protein LM5923_1680 [Listeria monocytogenes 08-5923]
 gi|16411011|emb|CAC99660.1| lmo1582 [Listeria monocytogenes EGD-e]
 gi|258600570|gb|EEW13895.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609179|gb|EEW21787.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057535|gb|ADB68476.1| hypothetical protein LM5578_1728 [Listeria monocytogenes 08-5578]
 gi|284060582|gb|ADB71521.1| hypothetical protein LM5923_1680 [Listeria monocytogenes 08-5923]
 gi|293590233|gb|EFF98567.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 332

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 115 QKKKNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 169

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 170 QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 213

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 214 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK-- 263

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL       +  K V L N + L
Sbjct: 264 --NGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311


>gi|255067377|ref|ZP_05319232.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
 gi|255048347|gb|EET43811.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
          Length = 262

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 159 YEHLIRRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           YE  +     ++    E    + TP  V  +   L+    D   K       +L +P CG
Sbjct: 88  YEDFLGELYMDLGASNERNGQYFTPMAVSRVMAKLV--GIDTAEKLEKQRFVSLLEPCCG 145

Query: 216 TGGFLTDAMNHVADCGS 232
           +G  L     H+AD G 
Sbjct: 146 SGANLLAFAEHIADSGK 162


>gi|47096795|ref|ZP_00234377.1| conserved domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47014828|gb|EAL05779.1| conserved domain protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 321

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 104 QKKKNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 158

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 159 QRQKMTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 202

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 203 CR----EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK-- 252

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL       +  K V L N + L
Sbjct: 253 --NGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 300


>gi|145223790|ref|YP_001134468.1| DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145216276|gb|ABP45680.1| DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 1189

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/430 (13%), Positives = 119/430 (27%), Gaps = 80/430 (18%)

Query: 35  ILPFTLLRRLEC-ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           +L     R  E  AL   R          GG++ D  +    A  +++            
Sbjct: 76  VLLTVFARYCEDNALLSPR--------WIGGADADHRAQALDARRAYFQQHPEHTDREWL 127

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPD 152
           +    +   + A+        F      +      +A L +   ++  G  L+    V  
Sbjct: 128 SQIIGHFGKFTATAG--LVDRFSPLHLVAPSGDAARALLEFWWQQDGDGQPLYGFAGVDT 185

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           R + + Y+ L         +      TP  V        ++P      + P    T+ DP
Sbjct: 186 RFLGDAYQDL----SEHAKKTYALLQTPEFVEEFILDQTMEP---ALADRPLQGFTVIDP 238

Query: 213 TCGTGGFLTDAMNHVADCGSHHK---------IPPILVPHGQELEPETHAVCVAGMLIRR 263
           TCG+G FL  A   +                    +   +G ++ P   A+    +L+  
Sbjct: 239 TCGSGHFLLGAFARLHQRWQREAPALGARELVAKALDGIYGVDINPFAVAIARFRLLVAA 298

Query: 264 LESDPRRDLSKNIQQ-------------------------GSTLSKDLFTG--------- 289
           L +     + +NI                           G  +  D             
Sbjct: 299 LHAAGDSSIEQNIGYTPHLAAGDSLLWGANQQLLPEDLLAGPAIRADATEDADALRSILQ 358

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +     + NPP+    +   +A  ++  +    ++   +P       + L+         
Sbjct: 359 REHDVVVGNPPYITPKDAALNATYRKLYSTTHRQYALTVP------FMELLFRLAHGSAG 412

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IEAIVALPTDLFFRTNIAT 405
               G    + S+S L               L+E  L    +  ++             T
Sbjct: 413 TRPAGWIGQITSNSFLKREFGS--------KLIEEFLPTVDLREVIDTSGAYIPGHGTPT 464

Query: 406 YLWILSNRKT 415
            + +   ++ 
Sbjct: 465 VIIVGRKQRP 474


>gi|300956331|ref|ZP_07168629.1| conserved domain protein [Escherichia coli MS 175-1]
 gi|300316843|gb|EFJ66627.1| conserved domain protein [Escherichia coli MS 175-1]
          Length = 109

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR- 476
             KV  I+A+  + + +N    +  ++++   +I+  Y + +N  K++ +   +      
Sbjct: 2   DDKVLFIDASREFKAGKN----QNQLSEENIEKIVKTYRNGDNVEKYAYLASLKEIQDND 57

Query: 477 -RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
             + + R +      D+  L  + A+    K  
Sbjct: 58  YNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAE 90


>gi|265751740|ref|ZP_06087533.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236532|gb|EEZ22002.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1938

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 54/254 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H          
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RILEPSAGVGVFVDSVLRH---------- 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G ++R L  D +      ++       +      F   +
Sbjct: 147 SPGADVMAFEKDLLT------GTILRHLYPDQK------MRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SN PFG     D    + E  ++   GR                 +   K       GG 
Sbjct: 195 SNIPFG-----DIAVFDPEFQRSDSFGRR--------SAQNAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
            A + S   L      S ++ +R  +     + + + LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL-----NSTKTSVRDEMFRQAHLVSAIRLPNNLFTDNAGTEVGSDLIILQK 296

Query: 413 --RKTEERRGKVQL 424
             +KTE  + +  +
Sbjct: 297 DLKKTEMSQDERLM 310


>gi|225027237|ref|ZP_03716429.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
 gi|224955437|gb|EEG36646.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
          Length = 2685

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 50/211 (23%)

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
             + +P+CGTG F           G   +       +G EL+  +  +             
Sbjct: 1218 RILEPSCGTGNFF----------GLLPESMNKSTLYGVELDQMSAKIA-------GYLYP 1260

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +   ++        +    F   + N PFG          +    +    R G  
Sbjct: 1261 EVNIENTGFERTD------YPDGYFDIAVGNVPFG----------DYRVNDPVYNRHG-- 1302

Query: 328  LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                     L   +   K       GG AA + +   +         +++R++L +   +
Sbjct: 1303 --------FLIHDYFFAKTLDKLRPGGVAAFITTKGTM-----DKENTKVRQYLFKRAEL 1349

Query: 388  EAIVALPTDLFFRTNIATY--LWILSNRKTE 416
               V LP   F          +  L  R+ E
Sbjct: 1350 LGAVRLPNTAFKNAGTKVTSDILFLQKREKE 1380


>gi|212695220|ref|ZP_03303348.1| hypothetical protein BACDOR_04758 [Bacteroides dorei DSM 17855]
 gi|212662130|gb|EEB22704.1| hypothetical protein BACDOR_04758 [Bacteroides dorei DSM 17855]
          Length = 252

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S+        F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKSGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MV-LCTD------SGETATGKRICDPTCGSGRLLLAY--HVRHLGNY--------LVAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +      + V  ML+     +     S   +          T  R
Sbjct: 159 VSRTCCLMTVCNMLVHGCIGEVIHHDSLCPENFMDGWMVNHTLTR 203


>gi|291525613|emb|CBK91200.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2510

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 67/234 (28%), Gaps = 61/234 (26%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            +    ++   +       + +P+ G G F           GS          +G EL+  
Sbjct: 951  IAMCINSALVQFGFRGGNVLEPSMGIGNFF----------GSMPAPMQRSKLYGVELDSI 1000

Query: 251  THAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
            +  +       A + I   E              +T   D F    F   + N PF    
Sbjct: 1001 SGRIAKQLYQNANISITGFE--------------NTTYPDNF----FDVVVGNVPF---- 1038

Query: 306  EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                         G+   F P   K +  +     +   K       GG  A++ +   L
Sbjct: 1039 -------------GDYKVFDP---KYNKYNFRIHDYFLAKALDQVRPGGMVAVITTKGTL 1082

Query: 366  FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                       IR++L E   +   V LP   F     T +   +  L  R+ +
Sbjct: 1083 DKANPT-----IRKYLAERAELVGAVRLPNTAFKDNAGTEVTADILFLQKRERK 1131


>gi|256637084|dbj|BAI03053.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-03]
          Length = 1630

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 94/328 (28%), Gaps = 46/328 (14%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYD 211
            +V+  +Y+   +    ++ E      TP +VV      + D  +  F ++       + D
Sbjct: 745  KVIKELYDGFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMD 804

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR-- 263
            P  GTG F+T  +          +       H  E+    + +    +      L+    
Sbjct: 805  PFTGTGTFITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAY 864

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAV 312
                    +D  R    +   GSTL  +    ++         + NPP+    E   D  
Sbjct: 865  EPFEGICLTDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNN 924

Query: 313  EKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +         R      + S  +         +             G    V ++  L  
Sbjct: 925  QNVSYPALDERIAKTYAERSTATNKRALYDSYIRAIRWASDRIGNCGVLGFVTNAGFLDA 984

Query: 368  GRAGSGESEIRRWLLEND-LIEAIVALPTD--------------LF-FRTNIATYLWILS 411
              A      +R+ L E    I  +  L  +              +F   +     + I+ 
Sbjct: 985  NTANG----LRQCLAEEFSSIH-VFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMV 1039

Query: 412  NRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +G++   +  D  T  +    
Sbjct: 1040 KNPDAKEQGRILFHDIGDYLTREQKLKH 1067


>gi|258542946|ref|YP_003188379.1| DNA helicase restriction enzyme type III R subunit [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256634024|dbj|BAH99999.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256640136|dbj|BAI06098.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-07]
 gi|256646248|dbj|BAI12196.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-26]
 gi|256652287|dbj|BAI18221.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-01-42C]
          Length = 1635

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 94/328 (28%), Gaps = 46/328 (14%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYD 211
            +V+  +Y+   +    ++ E      TP +VV      + D  +  F ++       + D
Sbjct: 745  KVIKELYDGFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMD 804

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR-- 263
            P  GTG F+T  +          +       H  E+    + +    +      L+    
Sbjct: 805  PFTGTGTFITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAY 864

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAV 312
                    +D  R    +   GSTL  +    ++         + NPP+    E   D  
Sbjct: 865  EPFEGICLTDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNN 924

Query: 313  EKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +         R      + S  +         +             G    V ++  L  
Sbjct: 925  QNVSYPALDERIAKTYAERSTATNKRALYDSYIRAIRWASDRIGNCGVLGFVTNAGFLDA 984

Query: 368  GRAGSGESEIRRWLLEND-LIEAIVALPTD--------------LF-FRTNIATYLWILS 411
              A      +R+ L E    I  +  L  +              +F   +     + I+ 
Sbjct: 985  NTANG----LRQCLAEEFSSIH-VFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMV 1039

Query: 412  NRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +G++   +  D  T  +    
Sbjct: 1040 KNPDAKEQGRILFHDIGDYLTREQKLKH 1067


>gi|25011394|ref|NP_735789.1| hypothetical protein gbs1352 [Streptococcus agalactiae NEM316]
 gi|24412932|emb|CAD47011.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 2066

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 65/227 (28%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL+    +  ++       + DP+ GTG F      H+ +              G EL+ 
Sbjct: 478 LLIRQMWSKLEQDGFSGGKILDPSMGTGNFFAAMPAHLREKSE---------LCGVELDT 528

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+        +L S+   ++              F    F   +SN PF      D 
Sbjct: 529 ITGAIAK------QLHSNVHIEVKG-------FETVAFNDNSFDLVISNVPFANIRIADN 575

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                                  D   +   +   K     + GG+ AI+ S+  +    
Sbjct: 576 QY---------------------DKPYMIHDYFVKKSLDLVHDGGQVAIISSTGTMDKRT 614

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                  I + + E       V LP   F     T++ T +      
Sbjct: 615 -----ENILQDIRETTDFLGGVRLPDTAFKAIAGTSVTTDMLFFQKH 656


>gi|313206729|ref|YP_004045906.1| hypothetical protein Riean_1242 [Riemerella anatipestifer DSM
           15868]
 gi|312446045|gb|ADQ82400.1| hypothetical protein Riean_1242 [Riemerella anatipestifer DSM
           15868]
 gi|315023800|gb|EFT36802.1| hypothetical protein RAYM_00255 [Riemerella anatipestifer RA-YM]
          Length = 1014

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 72/488 (14%), Positives = 143/488 (29%), Gaps = 78/488 (15%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K A  L G                +R L            ++   F     + +      
Sbjct: 168 KVANSLLGRV------------IFIRYLIDRNVELNKYHIKEKEDFYQILSNHKET---- 211

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
            Y F+   +   +           +  I                SS +   +        
Sbjct: 212 -YQFFQQVKDDFNGNLFPLKYKINDIEINENEKVNAGHLSII--SSLLKGDKIHSDSNIE 268

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              F   +     +P   +SN+YE  I     +    +  + TP  +V       +    
Sbjct: 269 LSLFEIYDFSI--IPIEFVSNVYEKFIG---VDKQADSGAYYTPLFLVDYIQKETV--SK 321

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------------KIPPIL 240
                       + DP CG+G FL + +  +    +                  K+  +L
Sbjct: 322 YFLDNPNEYNCKVLDPACGSGIFLVETLRQIISQYTKQHPVNVDNEVEYNQYKDKLKSLL 381

Query: 241 V--PHGQELEPETHAVCVAGMLIRRLESDPRRDLS----KNIQQGSTLSKDLFT------ 288
                G + +    +V +  + I  L+S   + +       ++  +    D F       
Sbjct: 382 QNNIFGIDKDENAISVAIFSLYITLLDSLKPKSIVGFKFPLLENTNFFVADFFDTNNTYN 441

Query: 289 ----GKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  F + L NPP+  K   K+K   EK  +N +         +  + +  FL+   
Sbjct: 442 TELKKHHFQFILGNPPWKTKGHPKEKQLFEKYIENRKKQENSSLEIENREIAEAFLV--- 498

Query: 344 NKLELPPNGGGRAAIVLSSSPLFN-GRAGSGESEIRRWLLENDLIEAIVALPT---DLFF 399
               +       + ++++S  L+   R    +   R++ L + L+  +V L +    +F 
Sbjct: 499 ---RVSDFNFYESGLIITSKVLYKISRKKEKKGVFRKYFLNHFLVRQVVELSSVRHQIFN 555

Query: 400 RTN----IATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            +N        +         E  R   V+ I    L  +I  E  K  +I     + I 
Sbjct: 556 NSNDSAVAPATILFYKKENDIEKLRENIVKHI---SLKPNIFFEAFKLMVIEKYDIKDIA 612

Query: 454 DIYVSREN 461
             +   E+
Sbjct: 613 QKFFIDED 620


>gi|256643193|dbj|BAI09148.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-22]
          Length = 1625

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 94/328 (28%), Gaps = 46/328 (14%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYD 211
            +V+  +Y+   +    ++ E      TP +VV      + D  +  F ++       + D
Sbjct: 745  KVIKELYDGFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMD 804

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR-- 263
            P  GTG F+T  +          +       H  E+    + +    +      L+    
Sbjct: 805  PFTGTGTFITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAY 864

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAV 312
                    +D  R    +   GSTL  +    ++         + NPP+    E   D  
Sbjct: 865  EPFEGICLTDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNN 924

Query: 313  EKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +         R      + S  +         +             G    V ++  L  
Sbjct: 925  QNVSYPALDERIAKTYAERSTATNKRALYDSYIRAIRWASDRIGNCGVLGFVTNAGFLDA 984

Query: 368  GRAGSGESEIRRWLLEND-LIEAIVALPTD--------------LF-FRTNIATYLWILS 411
              A      +R+ L E    I  +  L  +              +F   +     + I+ 
Sbjct: 985  NTANG----LRQCLAEEFSSIH-VFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMV 1039

Query: 412  NRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +G++   +  D  T  +    
Sbjct: 1040 KNPDAKEQGRILFHDIGDYLTREQKLKH 1067


>gi|282601441|ref|ZP_05981716.2| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
           15176]
 gi|282569100|gb|EFB74635.1| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
           15176]
          Length = 2002

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 69/257 (26%), Gaps = 62/257 (24%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L  R  +  +     + TP +V+H     L        +        + +P+ G G F
Sbjct: 481 EYLAARSSTLTA-----YFTPPEVIHAMYRAL--------ERMGVRGGNILEPSMGIGAF 527

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                                  +G E++  T  +               +   K   Q 
Sbjct: 528 F--------AHKPSSFDLNSAKLYGVEIDELTGRIAR-------------QLYQKARIQI 566

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +   K       F   + N PFG  +     A +K H                       
Sbjct: 567 TGFEKADLPDSFFDCAVGNVPFG-DFSVSDRAYDKLHFRIHD------------------ 607

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K       GG  A++ +S  L           +R+++     +   V LP   F 
Sbjct: 608 -YFLAKTIDKVRTGGIIAMITTSGTLDKKSDT-----VRKYIAARCDLIGAVRLPNTTFK 661

Query: 399 --FRTNIATYLWILSNR 413
               T     +  L  R
Sbjct: 662 QNAGTEAVADILFLQKR 678


>gi|261879728|ref|ZP_06006155.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333601|gb|EFA44387.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1497

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +             E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGVGAFTETFAKQAGMVDA------------MEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEEKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|253567590|ref|ZP_04845001.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841663|gb|EES69743.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1000

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 118/401 (29%), Gaps = 85/401 (21%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V      +L          SP     + D  CG G F     NH+ +  +  
Sbjct: 71  GQFFTPHEVCRDIVDML----------SPASSEMILDMCCGMGNFF----NHLPNHHNT- 115

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G +++ +  AV                 L  +        +  +  +RF  
Sbjct: 116 --------YGFDIDGKAVAVAR--------------YLYPDAHIEKCDIRQYYPEQRFDI 153

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  K++                              L   +   K     N  G
Sbjct: 154 IIGNPPFNLKFDYR----------------------------LSQEYYMEKAYDVLNPAG 185

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI---ATYLWILS 411
              +++ SS +   ++   E      +         V L  + F  T +    T + +  
Sbjct: 186 ILMVIVPSSFM---QSEFWEKTRITGINSRFSFIGQVKLNPNAFASTGVHNFNTKVMVFL 242

Query: 412 NRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            +      +     + I+ ++L   IR     +  I  D  R+      +R + +   + 
Sbjct: 243 RKSLHIEMQAYNAEEFISMSELKERIREARLMKHKIRFDLMRE-----TNRIDKEELEVF 297

Query: 469 DYRTFGY-RRIKVLRPLR-----MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +Y+   Y   +K    L         ++ K    +   + T  +++   ++         
Sbjct: 298 EYKLAKYMYELKAHTKLNKHIDKAEALVTKFRNQKPPENATREQVNQWEKNKLTTTKVLG 357

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
           + + Y         KE      +   K+K     ++  ++ 
Sbjct: 358 IIRRYITSQNTVPRKEVALVKTSYGFKLKQYAPRLLDKVSH 398


>gi|150003238|ref|YP_001297982.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
 gi|149931662|gb|ABR38360.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
          Length = 252

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 19/162 (11%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S+        F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKSGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG+G  L     HV   G++           ++
Sbjct: 116 MV-LCTD------SGETATGKRICDPTCGSGRLLLAY--HVRHLGNY--------LVAED 158

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +      + V  ML+     +     S   +          T
Sbjct: 159 VSRTCCLMTVCNMLVHGCIGEVIHHDSLCPENFMDGWMVNHT 200


>gi|163868188|ref|YP_001609396.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017843|emb|CAK01401.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1652

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 107/401 (26%), Gaps = 55/401 (13%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++          +     G+   +NN    I+   D   
Sbjct: 770  DAFHKELKNNVNSEIKKEEAIEMLAQHLVTRPVFEALFDGNEFVQNN---AISQAMDKIL 826

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               +  +       L+K          F    +        ++  +YE    +   + ++
Sbjct: 827  TELDKTNIEEKTKDLDKFYKSVT----FCTAGITETHAKQNLIIKLYESFFAKAFKKTTD 882

Query: 173  GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP  VV      + D   +   K       ++ DP  GTG F+T  +       
Sbjct: 883  KLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSDLIKP 942

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM------LIR---------RLESDPRRDLSKNI 276
               +       H  E+    + +    +      L++          L    R    KN+
Sbjct: 943  EDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTFRMLEEKNL 1002

Query: 277  QQ----GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             Q     ++   +L           NPP+    + + D  +         R G      S
Sbjct: 1003 LQELFKENSEYLELQKNLNIKVIFGNPPYSVGQKNENDNAKNTPYPILNKRIGETYAAQS 1062

Query: 333  DGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES------------ 375
              +    ++                 G    V  S  +                      
Sbjct: 1063 RATSTQKLYDSYIRAIRWASDRIENAGVIGFVSGSGYIEKSTMAGLRKSLAKEFTSIYVL 1122

Query: 376  ----EIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWI 409
                +IR+ +L N           ++F     T IA  L+I
Sbjct: 1123 NLRGDIRKNMLSNGT----AQEGENIFCNGSMTGIAVTLFI 1159


>gi|282878612|ref|ZP_06287388.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281299283|gb|EFA91676.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 1588

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +        +    E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEDKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T+I + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDIGSDLIVLQKQSGKE 305


>gi|170016625|ref|YP_001727544.1| adenine-specific DNA methylase [Leuconostoc citreum KM20]
 gi|169803482|gb|ACA82100.1| Adenine-specific DNA methylase [Leuconostoc citreum KM20]
          Length = 336

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 110/357 (30%), Gaps = 53/357 (14%)

Query: 98  NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAGLLYKICKNFSGI--ELHPDT 149
           +NL +    FS +    F         D +     ++       I +    +   L  D 
Sbjct: 11  DNLTAITTDFSKDVDMNFTGALVEILEDINDGSVHVDANKPNSVIVEQIQTLTQSLRQDK 70

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +    +  + + +  +   E    A   +TP  + +L +  LL         +     TL
Sbjct: 71  LSADDLRKLLQLVTLKVHREDKVPANSQITPDGIGYLLSDFLL------QTAALKTGDTL 124

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D   GTG  L    N + D G        +   G + +    A+  A      ++    
Sbjct: 125 IDFNVGTGNLLNTVNNLLVDNG------ITVARIGIDNDSRQLALASA------VDGLIN 172

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              +   +      +D    K     +++ P G                           
Sbjct: 173 DRTTSFYEADVVQLEDTPKAK---VVIADLPVGYYPMAAPS---------------YYAT 214

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           ++++G  +    L  K        G A +++ +  L    +     ++   L     I+A
Sbjct: 215 QLANGQSMVHQLLIEKSLDFLTPDGWAYLLVPADVLSGTDS----KKLLGMLTAKAQIKA 270

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
            + LP + F   + A  + ++   K  E  G + +      +  +++    ++ + D
Sbjct: 271 FLQLPNNFFQNQSAAKAILVIRK-KQAENTGDILM----GQYPPLKDVDNLKKFLQD 322


>gi|91774090|ref|YP_566782.1| hypothetical protein Mbur_2163 [Methanococcoides burtonii DSM 6242]
 gi|91713105|gb|ABE53032.1| Protein with adenine-specific DNA methyltransferase domains
           [Methanococcoides burtonii DSM 6242]
          Length = 1104

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E         +  +  + ++ D  +              ++F    F   + NPP+   W
Sbjct: 570 EFNRLLDGKLLKELQNKGIDIDEDKLKELKPFHWVMQFSNVFEKGGFDVVIGNPPYVNAW 629

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           E ++ +        +L         +     L++  +   LE+    G  + I+ +    
Sbjct: 630 EMEEGSKLIRTILPKLFN---DKCPLKSHWDLYIPFIIQALEINSKQGYFSYILPNPICR 686

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGKVQL 424
                     E+R+++LEN  I+ I+     ++F   +  + + I+ N K  ++   +  
Sbjct: 687 EKYG-----IEVRKYILENTNIKNILTSGVRNVFEGVSRQSIVLIIKNSKP-KKVDNIIS 740

Query: 425 INATDL 430
           IN  D 
Sbjct: 741 INYIDE 746


>gi|330978042|gb|EGH77945.1| N-6 DNA methylase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 142

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           PT +F+   +   +    N   ++ R   + +   DL T+ ++   K R +  D  +  +
Sbjct: 1   PTGIFYAQGVKANVVFFDNA-PKDGRVHTKGVWFYDLRTN-KHFTLKTRTLKPDDLQDFV 58

Query: 454 DIY-----VSRENGKFSRMLDYRTFGYRR 477
             Y       R   +  +   Y     R 
Sbjct: 59  TCYNPENRNERTATERFKFFSYEDLMARD 87


>gi|260061984|ref|YP_003195064.1| type II restriction enzyme, methylase subunit [Robiginitalea
           biformata HTCC2501]
 gi|88783546|gb|EAR14717.1| type II restriction enzyme, methylase subunit [Robiginitalea
           biformata HTCC2501]
          Length = 1006

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 117/372 (31%), Gaps = 100/372 (26%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--------------EGA 174
              LLY+  +N S  +     V   ++ +I+EH +    +  +              +  
Sbjct: 314 DDNLLYEHTRNLSNYDF-ESEVSVNILGHIFEHSLTEIENIQAEIEGAEIDKSKTKRKKD 372

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIR--------------------------- 207
             F TP+ +        +       K    +                             
Sbjct: 373 GVFYTPKYITKYIVENTVGKLCEEKKAELDITDEAYQPAKQRSRKRLQKLQDYRDWLLQL 432

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--------------------GQEL 247
           T+ DP CG+G FL  A+  +     H  I  +   +                    G ++
Sbjct: 433 TICDPACGSGAFLNQALEFL--IAEHRYIDELSAKYNKDALILSDVENTILENNLFGVDI 490

Query: 248 EPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKD-----------------LFTG 289
             E+  +    + +R   +      LS NI+ G++L  D                 +F  
Sbjct: 491 NEESVEIAKLSLWLRTAQKGRKLTSLSDNIKCGNSLIDDPKVAGDKAFNWQEEFPEVFEK 550

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   + NPP+G K         +E     +G         S+   LF+    NKL  P
Sbjct: 551 GGFDVVIGNPPYGAKLNTSAINYFREVYKTVIG--------HSEAYYLFIDITINKLLQP 602

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLW 408
               G    ++ ++ L N  A     E+RR +L    + +++      +F   ++ T + 
Sbjct: 603 DALLG---FIIPNAWLSNKYA----KELRRLVLFETRMLSLINFNRQIIFEDASVETSIV 655

Query: 409 ILSN--RKTEER 418
           I      K ++R
Sbjct: 656 ITKKVNPKPDDR 667


>gi|126179107|ref|YP_001047072.1| hypothetical protein Memar_1159 [Methanoculleus marisnigri JR1]
 gi|125861901|gb|ABN57090.1| protein of unknown function DUF450 [Methanoculleus marisnigri JR1]
          Length = 1036

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 36/207 (17%)

Query: 39  TLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             LR  E   +E       ++  A       L+   + A   + +   +     G     
Sbjct: 239 IFLRICEDRGIEEY--GQLKRIAAGKDVYEQLKLLFRYADDRYNSGLFHFSGEAGRGEEP 296

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +NL   +A          +D      I+ L      Y+               P  ++  
Sbjct: 297 DNLTLSLA---------IDDKVLKQIISHLYYPDSPYEF-----------SVFPADILGQ 336

Query: 158 IYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +YE  + +                EV +    F TP  +V       +            
Sbjct: 337 VYEQFLGKVIRLTAGHQAKVEEKPEVKKAGGVFYTPTYIVEYIVKQTVGNLVEGKDPKAV 396

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG 231
               + DP CG+G FL  A  ++ D  
Sbjct: 397 AGLHVLDPACGSGSFLLGAYQYLLDWH 423


>gi|323693253|ref|ZP_08107471.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
 gi|323502736|gb|EGB18580.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
          Length = 2971

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 61/208 (29%), Gaps = 51/208 (24%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            + DP  G G F           G   +       +G EL+  T  +          +  P
Sbjct: 1427 VLDPAAGIGNFY----------GCLPEGMKESRLYGAELDGLTGRIAK--------QLYP 1468

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              D+     + ++   D      F   + N PFG+    D+                   
Sbjct: 1469 HADIKITGFENTSYPNDF-----FDVAVGNVPFGQYKVSDR------------------- 1504

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             K    + L   +   K       GG  A V S   +          E+R++L +   + 
Sbjct: 1505 -KYDKHNFLIHDYFFAKTLDKVRPGGIVAFVTSKGTM-----DKKNPEVRKYLAQRAELL 1558

Query: 389  AIVALPTDLF---FRTNIATYLWILSNR 413
              V LP   F     T + + +  L  R
Sbjct: 1559 GAVRLPNTAFKENAGTEVTSDILFLKKR 1586


>gi|255973332|ref|ZP_05423918.1| SNF2 family protein [Enterococcus faecalis T1]
 gi|255964350|gb|EET96826.1| SNF2 family protein [Enterococcus faecalis T1]
          Length = 2266

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F     + + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPSEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                      +   +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHD---------------------YFIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A       R+ L     +   V LP   F     T + T +      
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKH 910


>gi|283781193|ref|YP_003371948.1| type II DNA modification enzyme [Pirellula staleyi DSM 6068]
 gi|283439646|gb|ADB18088.1| putative type II DNA modification enzyme [Pirellula staleyi DSM
           6068]
          Length = 1629

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 40/173 (23%)

Query: 149 TVPDRVMSNIYEHLIR---RFGSEVS------------EGAEDFMTPRDVVHLATALLLD 193
           ++    + ++YE L+    +  ++              +    + TP  +++      LD
Sbjct: 476 SLGSDELGSVYESLLELHPKIDTDEGPFTLGTASGNERKTTGSYYTPTSLINCLLDSALD 535

Query: 194 PDDALFKESPGMIR--------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----- 240
           P      + P             + DP CG+G FL  A   +A   +  +          
Sbjct: 536 PVVHAAIDVPDRAEAERKLLNLKVCDPACGSGHFLIAAAERMAMHLARLRTGDDEPNTLD 595

Query: 241 -----------VPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                        +G ++ P    +C   + +  +E   P   L  +IQ G++
Sbjct: 596 VQHAKRDIIGRCIYGVDINPMAVELCKVALWMEAMEPGKPFSYLEHHIQCGNS 648


>gi|332798525|ref|YP_004460024.1| type I restriction-modification system, M subunit
          [Tepidanaerobacter sp. Re1]
 gi|332696260|gb|AEE90717.1| type I restriction-modification system, M subunit
          [Tepidanaerobacter sp. Re1]
          Length = 127

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 4  FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               + L + +W++ ++L G    + +   +L    ++ +         ++    +  G
Sbjct: 11 NGNKKSDLYSKLWQSCDELRGGMDASQYKDCVLVRLFVKYVTDKYYGKPDSLL--VVPDG 68

Query: 64 GSNIDLESF 72
          GS  D+   
Sbjct: 69 GSFHDMVKL 77


>gi|218296494|ref|ZP_03497222.1| hypothetical protein TaqDRAFT_3792 [Thermus aquaticus Y51MC23]
 gi|218243036|gb|EED09568.1| hypothetical protein TaqDRAFT_3792 [Thermus aquaticus Y51MC23]
          Length = 1053

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 39/240 (16%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           R  E   EP ++  R   L        LE    +      N  E +    G   T    E
Sbjct: 145 RFREGLSEPEKAEKRVLLLNKFVFAQTLEDHALIPFRFLRNKYEEARRLWGPKGTAKVAE 204

Query: 102 SYIASFSDNAKAIFEDFDFSSTI--------ARLEKAGLLYKICKNFSG---------IE 144
           +++    +   A ++   F  +           LE   L  +    F           + 
Sbjct: 205 AFLRGVDEWFYAFYDTELFQDSFLEHLEQDPKNLEDFLLAMEEILGFGAWQATFGQGLLH 264

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP---------- 194
            +   + + V    YE  +    ++  +    + TP  +  L   + ++           
Sbjct: 265 YNYRAIDEDVFGKAYETFL----AQGRKEGGIYYTPSSLTALMAKMAVEETLWPRARELD 320

Query: 195 --------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
                   D+A  +          DP  G+G FL   +  V +  ++ +         QE
Sbjct: 321 RALGEERYDEAEARARDLTQVAFLDPAAGSGSFLVKILREVVEVYAYLEERTRWALELQE 380


>gi|169829575|ref|YP_001699733.1| hypothetical protein Bsph_4142 [Lysinibacillus sphaericus C3-41]
 gi|168994063|gb|ACA41603.1| Hypothetical ytxK protein [Lysinibacillus sphaericus C3-41]
          Length = 309

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 45/235 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP  GTG  L   MN +            +   G E++     +  A        +D
Sbjct: 103 SIMDPAVGTGNLLLTVMNLL---------DGKVEATGVEVDELLIRLAAA-------TAD 146

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +Q +               + + P G  +  ++ A+E E  + E       
Sbjct: 147 LTEQPISLYRQDALQD---LLANPVDAVVCDLPVG-YYPNEEIALEYELCSSEGM----- 197

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                  S    + +   +     GG      L+ S LF+        ++ +++ ++  I
Sbjct: 198 -------SYAHHLFMEQSMNYTKEGGYL--FFLAPSHLFDSEQS---KQLHKYIQKHAWI 245

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDLWTSIRNEGKKR 441
           +AI+ LP  +F   ++   + IL  + K  +   +V L         + N   K+
Sbjct: 246 QAIIQLPDSMFANKSLEKSIVILQKQSKECQSPKEVLL-------AKVPNMQNKQ 293


>gi|146344269|ref|YP_001202125.1| hypothetical protein pQBR0379 [Pseudomonas fluorescens SBW25]
 gi|146188081|emb|CAM96411.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 268

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 7/147 (4%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D     ++  +Y  L        +     F TP  +  + + L +D +    +       
Sbjct: 81  DLQAGDLLGELYMRL-----GVSNADMGQFFTPPSISTVLSKLAMDTEHIQAQVKRRGFV 135

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TL +P  G+G  +    N + + G +++          +L+     +    + +  + + 
Sbjct: 136 TLSEPASGSGAMVIGFANSMLELGINYQQHLHATL--IDLDIRAVHMAFIQLSLLHIPAV 193

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  + + S           F Y
Sbjct: 194 VVHGNTLTLAEYSHWHTPSHAMNLFDY 220


>gi|89885781|ref|YP_515979.1| helicase-like [Rhodoferax ferrireducens T118]
 gi|89347779|gb|ABD71981.1| helicase-like [Rhodoferax ferrireducens T118]
          Length = 1726

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 67/283 (23%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S          TP  V+        D    + ++       + +P  G G  L    
Sbjct: 175 EFESAKESTLNAHFTPIPVI--------DQLWTILRQIGFTGGRIIEPAGGIGFML---- 222

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                      I         E++  +         ++ L       L    ++ +    
Sbjct: 223 -----GAMPSDIAQRSSVTAVEIDDLSAR------FLKVLYGSHANVLHMGFEKTNL--- 268

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                + F   + N PFG     D                   L + +        +   
Sbjct: 269 ---PEQYFDLVIGNVPFGNYSVGD-------------------LRRKTYSDWAIHNYFVG 306

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           +       GG  A++  +S  F   +     ++R  +     +   + LP   F     T
Sbjct: 307 RSLDLVRPGGLVAVI--TSAYFMDNSN---DKVRDVIARKAKLLGAIRLPAGTFSEIANT 361

Query: 402 NIATYLWILSNRKT------EERRGKV---QLINATDLWTSIR 435
           ++   L IL  R +      EER   V    L++  +  T +R
Sbjct: 362 DVVADLVILQKRSSTETLTREERENWVETTLLLD--EDGTKMR 402


>gi|313126295|ref|YP_004036565.1| type i restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312292660|gb|ADQ67120.1| type I restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 1250

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 12/175 (6%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           ++   +      +    +   T G     +   +   S  ++      D +  S   R  
Sbjct: 310 IDDMQEQLVEGLFQDDIFIWWTDGYREQIDTQHASGPSRFEDVARGSGDVERVSETTRDR 369

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            +  + ++   F+ +      V   ++ ++Y+   R F  E  +   +F TP+ V+    
Sbjct: 370 FSRAVAEVF--FNVLRFDFQDVEGDLLGDLYQ---RYFDPETRKALGEFYTPQPVIDYIM 424

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
                  D +  E       L DP+CG+G FL +A+        + +  P    H
Sbjct: 425 -------DGVGYERGVSNERLIDPSCGSGTFLVEAVERYITDVENFEDNPDWEEH 472


>gi|217032436|ref|ZP_03437930.1| hypothetical protein HPB128_164g36 [Helicobacter pylori B128]
 gi|216945915|gb|EEC24533.1| hypothetical protein HPB128_164g36 [Helicobacter pylori B128]
          Length = 551

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 21/134 (15%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +L+ D  P       YE  +  +  ++ E    + TP  VV      L       FK++P
Sbjct: 28  DLNDDKDPYLHF---YETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAP 84

Query: 204 GMIRT--------LYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPIL-VPHGQ 245
             +++        L D   GTG FL +A     +              K   +L   +G 
Sbjct: 85  LGLKSALDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEEKYQNLLKQFYGF 144

Query: 246 ELEPETHAVCVAGM 259
           E     +A+    +
Sbjct: 145 EYLIAPYAIAHLNL 158


>gi|28378841|ref|NP_785733.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum WCFS1]
 gi|254557047|ref|YP_003063464.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum JDM1]
 gi|28271678|emb|CAD64584.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum WCFS1]
 gi|254045974|gb|ACT62767.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum JDM1]
          Length = 336

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 34/220 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ D   GTG  LT  +N +         P  +  +G + +    A+    M ++R   +
Sbjct: 123 SILDIAVGTGNLLTTVINQL-----QTDRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVE 177

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +           D     +    + + P G     D              R    
Sbjct: 178 LFHQDAI----------DPLVMPKTTVVIGDLPVGYYPLDD--------------RVQGF 213

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K ++G       +  +       GG    ++ ++   +  +      + +W+     +
Sbjct: 214 QTKATNGHSYIHHLMMEQAMAHLLPGGWGVFLVPTTIFQSQESQG----LLKWMSTAAYL 269

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
           + ++ LPT+LF        + +L    +   + GKV L +
Sbjct: 270 QGLLNLPTNLFLDEKSRKSIVVLQKHGQRAHQAGKVLLGD 309


>gi|227537745|ref|ZP_03967794.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242359|gb|EEI92374.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1810

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 52/245 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V+   +  L + D  + K          +P+ G G F   + +           
Sbjct: 105 FYTPPQVIDAISETLRESDVNIQK--------FLEPSAGIGSF-IQSFSENQQTKVTAYE 155

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L   G+ L+   H    + + +   E  P ++ +                  +    
Sbjct: 156 KDLLT--GKILK---HLYPESNIRVSGFEEIPEKEQNS-----------------YDVVA 193

Query: 297 SNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SN PFG     D   +  K+    +  R       +    ML               GG 
Sbjct: 194 SNIPFGDTSVFDLTFSRSKDPAKIQAARSIHNYFFLKGNDML-------------REGGL 240

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
              + S   L +         IRR L++++ + ++V LP +LF     T + + L IL  
Sbjct: 241 QVFITSQGILNSPNNEP----IRRALMKSNHLVSVVRLPNNLFTEYAGTEVGSDLIILQK 296

Query: 413 RKTEE 417
              ++
Sbjct: 297 NTAKQ 301


>gi|307244208|ref|ZP_07526323.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492358|gb|EFM64396.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 116

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 9/103 (8%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
           +    +  ++   IL F   + L                        +ID+  +V+    
Sbjct: 1   MRSKIEANEYKDYILGFIFYKYLSDQEIKFLKENDFDDADIKDLREDDIDILEYVQRNIG 60

Query: 79  SFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIF 115
            F +      + +        ++ R+ L ++        K   
Sbjct: 61  YFISYENLFSTWISKGRDFDVSDVRDALSAFNRLIYPTHKKFL 103


>gi|298383565|ref|ZP_06993126.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298263169|gb|EFI06032.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1657

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP         ++     A FK++   +R+  +P+ G GGFL  AM            
Sbjct: 91  FYTP----KFLIDVVAKQIHATFKDNELQMRSFLEPSAGIGGFLPVAM------------ 134

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +P      V+G+++  L  +     +       T+ +  F   +F    
Sbjct: 135 -SDTCGYAIEKDP------VSGLILSLLNDNTVTRTAGFE----TIDEQGFEHTKFDVIA 183

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    E   K G   +           +     +   K     N GG  
Sbjct: 184 SNIPFGNFRVFDA---ELWKKGGIYEQ----------ATKTIHNYFFVKALELLNEGGLL 230

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY--LWILSNR 413
           A V S               +R +L+ +  + + + +P  LF + + I     L I    
Sbjct: 231 AFVTSRGVADTPSN----KFVREYLVNHADLISAIRMPDTLFMYTSGIEVGSDLLIFQKH 286


>gi|253990769|ref|YP_003042125.1| putative phage integrase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639100|emb|CAR67712.1| Probable phage integrase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782219|emb|CAQ85383.1| Probable phage integrase [Photorhabdus asymbiotica]
          Length = 400

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 53/166 (31%), Gaps = 9/166 (5%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             I +  K   + +  +    + +  +  P   +  ++  L     +  ++  + F TP 
Sbjct: 54  RQIIKHYKPEDVSRFSQLLEHVMMGLEFEPHDFLGGVFMQL-----NLGNKHLKQFFTPW 108

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +      + L          P    TLY+P CG G  +  A   +   G  +     + 
Sbjct: 109 PISLAMAKMQLSDVGQRLTRQPFF--TLYEPACGAGCMVIAAAEVLKMSG--YNPAQHMW 164

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +++    ++    + +  +  +     +   ++   +   + 
Sbjct: 165 VSCVDIDVVAASMAYIQLSLLGIPGEVVIGDALTNERHRVMYTPVH 210


>gi|12837534|gb|AAK08958.1|AF306668_3 DNA methyltransferase BseMII [Geobacillus stearothermophilus]
          Length = 648

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 60/356 (16%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N    I    DN   +     +  T     +  + +   +  + ++         ++  +
Sbjct: 37  NNIKLINHTDDNQLILKALKLYERTFQYKPREIMQFPQAELINPLDY-------DLLGRV 89

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE  I + G+   + +  F +P +VV+     L   +    K+   +        CGTG 
Sbjct: 90  YEEHIHKNGT--RKKSGQFYSPIEVVNYMIDSLKLTEVKDIKKKKFIDI-----ACGTGI 142

Query: 219 FLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGML----------- 260
           FL    + +     +  +    +        +G ++   +  +    ++           
Sbjct: 143 FLLKITDTLISIYKNENLTTKDIVELVCNNIYGLDINSTSCLITKINLINLFIIRLGSDF 202

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFT-------------GKRFHYCLSNPPFGKKWEK 307
           +   +       + N  +  T   +                   F Y + NPP+ +    
Sbjct: 203 LNYTDQLKLNIFNTNSIENRTDLLNKEELEIVEIKNRIGKYKDGFDYIVGNPPYLEAKRM 262

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            K+   KE           G         L++  +A       +  G  +++L +     
Sbjct: 263 PKEL--KEILKSNYPEMIYG------AFDLYIGFIAQC-NRLVSDNGTVSLILPNKFTVA 313

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKV 422
             A      IR++L +   I  IV L   D+F + ++   + I     +  +  KV
Sbjct: 314 KYAIP----IRKYLNDKMTIIEIVDLSEMDIFHKADVYP-IIISYKNTSPTKEHKV 364


>gi|312128987|ref|YP_003996327.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132]
 gi|311905533|gb|ADQ15974.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132]
          Length = 1805

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 52/245 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  ++        D   A  +E+   I+   +P+ G G F+     +     + ++ 
Sbjct: 105 FYTPPQII--------DAVSATLRENGLDIQKFLEPSAGIGSFIQSFSENQKASTTAYEK 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +     ++L PE      + + +   E    ++ +                  +    
Sbjct: 157 DLLTGKVLKQLYPE------SNVRVSGFEEISEKEHNS-----------------YDVVA 193

Query: 297 SNPPFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SN PFG     D   +  KE    +  R       +    ML               GG 
Sbjct: 194 SNIPFGDTSVFDLSYSRSKETAKVQATRSIHNYFFLKGTDML-------------REGGL 240

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
            A + S   L + +       IRR L++++ + ++V LP +LF     T + + L IL  
Sbjct: 241 LAYITSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQK 296

Query: 413 RKTEE 417
              ++
Sbjct: 297 NTAKK 301


>gi|160886735|ref|ZP_02067738.1| hypothetical protein BACOVA_04747 [Bacteroides ovatus ATCC 8483]
 gi|156107146|gb|EDO08891.1| hypothetical protein BACOVA_04747 [Bacteroides ovatus ATCC 8483]
          Length = 1337

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP         ++     A FK++   +R+  +P+ G GGFL  AM            
Sbjct: 91  FYTP----KFLIDVVAKQIHATFKDNELQMRSFLEPSAGIGGFLPVAM------------ 134

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +P      V+G+++  L  +     +       T+ +  F   +F    
Sbjct: 135 -SDTCGYAIEKDP------VSGLILSLLNDNTVTRTAGFE----TIDEQGFEHTKFDVIA 183

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    E   K G   +           +     +   K     N GG  
Sbjct: 184 SNIPFGNFRVFDA---ELWKKGGIYEQ----------ATKTIHNYFFVKALELLNEGGLL 230

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY--LWILSNR 413
           A V S               +R +L+ +  + + + +P  LF + + I     L I    
Sbjct: 231 AFVTSRGVADTPSN----KFVREYLVNHADLISAIRMPDTLFMYTSGIEVGSDLLIFQKH 286


>gi|289764892|ref|ZP_06524270.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
 gi|289716447|gb|EFD80459.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
          Length = 1914

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 51/231 (22%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D               + +P+ G G F+          G+  +       +  EL+
Sbjct: 458 KVVIDNIYKGLDNLGFKEGKILEPSSGIGNFI----------GNIPEKMENSKFYSVELD 507

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +  A                +   Q        F    F   + N PFG      
Sbjct: 508 SLSGRIEKA-------------LYPQANIQIDGFENTDFRNNFFDVAVGNVPFGD----- 549

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                          F     +    + L   +   K       GG  A + S+  +   
Sbjct: 550 ---------------FKVNDKEYDRNNFLIHDYFFAKSIDKVRPGGVIAFITSNGTM--- 591

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                +  IRR++ E   +   V LP + F     T + + +  L  R+  
Sbjct: 592 --DKKDESIRRYIGERCELLGAVRLPNNTFKGVAGTEVTSDIIFLKKREER 640


>gi|150025618|ref|YP_001296444.1| endonuclease-methyltransferase fusion protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772159|emb|CAL43635.1| Probable endonuclease-methyltransferase fusion protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 995

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 116/392 (29%), Gaps = 82/392 (20%)

Query: 90  TLGSTNTRNNLESYIASFSDNAK----AIFEDFDFSSTIARLEKAGLLYKICKN--FSGI 143
           TL    T ++  + I  FS   K     +F+    +  I  L    + ++I K+  F   
Sbjct: 249 TLLQLATNDDFNALIDKFSKADKKYNSGLFDQLLSNEIIKNLSS--VFWEIIKHLYFPES 306

Query: 144 ELHPDTVPDRVMSNIYEHLI-RRFGSEVSE----------GAEDFMTPRDVVHLATALLL 192
                     ++ NIYE  +  +      +            +   TP  +++      +
Sbjct: 307 PYSFSVFSSDILGNIYEIFLSEKLSIVTGKIELIKKPENVDKDIVTTPTYIINDILRNTV 366

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
            P      +   ++    D +CG+G FL +    + D    + +   +    Q    +T+
Sbjct: 367 IPKCKDKTDKEILLLKFADISCGSGAFLLELFQLLNDIVIDYYLKNDVTKLIQ-TNIDTY 425

Query: 253 AV-------------------------------------------CVAGMLIRRLESDPR 269
            +                                                ++  L+S+  
Sbjct: 426 KLPFEIKKEILLNCVFGVDKDYNAVEASKFGLLLKLLEGEDVNSVNKNNPILPDLDSNIF 485

Query: 270 RDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              S         +K+L       F   +F   + NPP+ K    +        +     
Sbjct: 486 FGNSLINSSEIKENKNLEIINPYDFEDLKFDVIIGNPPYMKS---EDMKNITPIELPIYK 542

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  K  D   LF+      L    N  G    ++ S      + G+G   +R  L 
Sbjct: 543 DNFKSAYKQFDKYFLFIEQGLKLL----NDDGVLGYIVPSKF---SKVGAG-KNLRELLS 594

Query: 383 ENDLIEAIVALPTD-LFFRTNIATYLWILSNR 413
           +N  ++ +++   + +F      T L   S +
Sbjct: 595 KNGNLQTLISFGANQVFKDKTTYTCLLFTSKK 626


>gi|188527680|ref|YP_001910367.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
 gi|188143920|gb|ACD48337.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
          Length = 2803

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 123/413 (29%), Gaps = 76/413 (18%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 958  EFRRAYSSTRDAYYTP----KLVIDSIYQGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 1009

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1010 -------AHAPSDKNYRFMGTELDP--------------ISANISKFLYPNQVINNTALE 1048

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G    K   + +KE  N  +  +  G                 
Sbjct: 1049 NHQFYQEYDAFVGNPPYGS--HKIYSSNDKELSNESVHNYFLGK-------------AIK 1093

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +      S   ++R  + +N      + LP  +F  T   
Sbjct: 1094 ELK----DDGIGAFVVSSWFM-----DSKNPKMREHIAQNTTFLGAIRLPNSVFKATGAE 1144

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI----------INDDQRRQILD 454
                I+  +K  +         A   +  I +      +               + +I++
Sbjct: 1145 VSSDIVFFKKCVDEATNQSFTKAMPYYDKIIDSLDNDTLFALQNNRFDSFTPSDQLKIVN 1204

Query: 455  IYVS---RENGKFSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLEAD 501
               S    +  K  R    +D   FGYR          + +    +  L++  L      
Sbjct: 1205 AIASHFGFKQEKLQRWYEKIDTANFGYREQDYKIIKGFIDKVGENNINLNEQTLNEYFIH 1264

Query: 502  ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                 L  L         +   +QIY Y       K    S        K  K
Sbjct: 1265 HPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLDLSQALNQAIEKLPK 1317


>gi|161522621|ref|YP_001585550.1| hypothetical protein Bmul_5588 [Burkholderia multivorans ATCC
           17616]
 gi|189348517|ref|YP_001941713.1| hypothetical protein BMULJ_05916 [Burkholderia multivorans ATCC
           17616]
 gi|160346174|gb|ABX19258.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189338655|dbj|BAG47723.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 333

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 32/203 (15%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
             +SA R+          +L   +K  GY+   +  ++     +    +N       F  
Sbjct: 2   SRKSAERKLVREADPHQAELVKLIKQFGYAHQPSVVFADFVEMAAIALSNSVDK-PQFEP 60

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH------------PDTVP-----D 152
             K   E       IAR  K   L    + F+ + L             P  +P      
Sbjct: 61  REKRYVE-------IARKYKPEELQLFARMFAELTLSFEHRLGVEEGLAPGDLPCPGNLT 113

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  +        ++GA  F TP  V  L   + +   D            + +P
Sbjct: 114 DVLGETYMTM-----GIGNDGAGQFFTPYSVSRLMAGIAIG--DRSEAVERDGFMRMQEP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHK 235
            CG GG +    + +   G +++
Sbjct: 167 ACGAGGMVIATADALLSIGQNYQ 189


>gi|218264045|ref|ZP_03477962.1| hypothetical protein PRABACTJOHN_03652 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222335|gb|EEC94985.1| hypothetical protein PRABACTJOHN_03652 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1080

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 77/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ ++      +     A F+E+   +R+  +P+ G GGFL  AM            
Sbjct: 155 FYTPKFLIDTVARQI----HATFRENDLQMRSFLEPSAGIGGFLPVAM------------ 198

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P    +  E +  T      G+++  L  D     +       T++        F    
Sbjct: 199 -PETRSYAFEKDSIT------GLILALLNDDTTALTTGFE----TIADQQLEHTAFDVIA 247

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL    GG  
Sbjct: 248 SNIPFG------------NFRVFDAELWKKGGLYEQATKTIHNYFFVKAMELLTE-GGLL 294

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S               +R +L+ +  +   + LP  LF  T+   + + L I    
Sbjct: 295 AFVTSRGIADTPSN----KFVREYLVNHADLITALRLPDTLFMPTSGIEVGSDLLIFQKH 350


>gi|308181041|ref|YP_003925169.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046532|gb|ADN99075.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 316

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 34/220 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ D   GTG  LT  +N +         P  +  +G + +    A+    M ++R   +
Sbjct: 103 SILDIAVGTGNLLTTVINQL-----QTDRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVE 157

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +           D     +    + + P G     D              R    
Sbjct: 158 LFHQDAI----------DSLVMPKTTVVIGDLPVGYYPLDD--------------RVQGF 193

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K ++G       +  +       GG    ++ ++   +  +      + +W+     +
Sbjct: 194 QTKATNGHSYIHHLMMEQAMAHLLPGGWGVFLVPTTIFQSQESQG----LLKWMSTAAYL 249

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
           + ++ LPT+LF        + +L    +   + GKV L +
Sbjct: 250 QGLLNLPTNLFLDEKSRKSIVVLQKHGQRAHQAGKVLLGD 289


>gi|256026903|ref|ZP_05440737.1| helicase [Fusobacterium sp. D11]
          Length = 1923

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 51/231 (22%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D               + +P+ G G F+          G+  +       +  EL+
Sbjct: 467 KVVIDNIYKGLDNLGFKEGKILEPSSGIGNFI----------GNIPEKMENSKFYSVELD 516

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +  A                +   Q        F    F   + N PFG      
Sbjct: 517 SLSGRIEKA-------------LYPQANIQIDGFENTDFRNNFFDVAVGNVPFGD----- 558

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                          F     +    + L   +   K       GG  A + S+  +   
Sbjct: 559 ---------------FKVNDKEYDRNNFLIHDYFFAKSIDKVRPGGVIAFITSNGTM--- 600

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                +  IRR++ E   +   V LP + F     T + + +  L  R+  
Sbjct: 601 --DKKDESIRRYIGERCELLGAVRLPNNTFKGVAGTEVTSDIIFLKKREER 649


>gi|300768056|ref|ZP_07077962.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494405|gb|EFK29567.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 349

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 71/220 (32%), Gaps = 34/220 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ D   GTG  LT  +N +         P  +  +G + +    A+    M ++R   +
Sbjct: 136 SILDIAVGTGNLLTTVINQL-----QTDRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVE 190

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +           D     +    + + P G     D              R    
Sbjct: 191 LFHQDAI----------DSLVMPKTTVVIGDLPVGYYPLDD--------------RVQGF 226

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             K ++G       +  +       GG    ++ ++   +  +      + +W+     +
Sbjct: 227 QTKATNGHSYIHHLMMEQAMAHLLPGGWGVFLVPTTIFQSQESQG----LLKWMSTAAYL 282

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
           + ++ LPT+LF        + +L    +   + GKV L +
Sbjct: 283 QGLLNLPTNLFLDEKSRKSIVVLQKHGQRAHQAGKVLLGD 322


>gi|110347115|ref|YP_665933.1| methyltransferase type 11 [Mesorhizobium sp. BNC1]
 gi|110283226|gb|ABG61286.1| Methyltransferase type 11 [Chelativorans sp. BNC1]
          Length = 1516

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 67/231 (29%), Gaps = 50/231 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F       + D         +    G EL+P T  +         
Sbjct: 3   WRGGRVLEPGIGTGLFPALMPEGLRD---------VSHVTGIELDPVTARIARL------ 47

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     +L     F   + NPPF           ++  ++    R
Sbjct: 48  ------LQPQARIITGDFARTELPAS--FDLAIGNPPFS----------DRTVRSDRAYR 89

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                      S+    +   +       G  AA V SS  +      +     R  + +
Sbjct: 90  ---------SLSLRLHDYFIARSIDLLKPGAFAAFVTSSGTMDKADVCA-----REHIAK 135

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           +  + A + LP   F     TN+   +     RK  E  G+   ++  ++ 
Sbjct: 136 SADLIAAIRLPEGSFRADAGTNVVVDILFFRKRKAGEPEGEQSWLDTENVR 186


>gi|323126876|gb|ADX24173.1| hypothetical protein SDE12394_03250 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 541

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 32/271 (11%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD-AM 224
           +     +    + TP+ + +L          +L  ++   I  ++DP  G+G FL   A 
Sbjct: 9   YSDNDRKKNGIYFTPKKIANLM------GCYSLHIKNTIDIPNIFDPAIGSGIFLLTIAK 62

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
             V                G ++  E   +    +     E         N+ Q  +LS 
Sbjct: 63  ELVKSSNVDIIKIIENHLFGVDIVKENVILSKILLGTLSYELKRSLPKKFNLVQLDSLSL 122

Query: 284 -----KDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                K LF+ + F   +SNPP+  G++   D     K + N   G              
Sbjct: 123 TEKSVKSLFSIEHFDIVISNPPYVSGEQISDDTKIYFKHYPNTVYGNPD----------- 171

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L++      L+L     G  A +  +S  F  + G    ++R +L     +  ++   +D
Sbjct: 172 LYIPFFELGLKLLKPS-GIGAFITPNSY-FRSQNG---KKLRAYLRNKTEVIKLINFNSD 226

Query: 397 L-FFRTNIATYLWILSNRKTEERRGKVQLIN 426
           L F   +  + +     +  ++++ ++  ++
Sbjct: 227 LVFDDISHYSAINFFIKKSNDQQQNRMYFLD 257


>gi|147677974|ref|YP_001212189.1| hypothetical protein PTH_1639 [Pelotomaculum thermopropionicum SI]
 gi|146274071|dbj|BAF59820.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 221

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 49/226 (21%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             YE ++    + + +    F T R+++     +L           P     + DP CG+
Sbjct: 1   MAYETIVS---NTLKQERGQFFTHRNIIRFMVKML----------DPDEKDMVLDPACGS 47

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GGFL   ++HV    +             EL P+   +    +L  R+      + +K  
Sbjct: 48  GGFLVVVLDHVRRKIAR------------ELFPDEEGI----LLEDRVNDPRVVERAKYT 91

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG T     F    ++      P G +        +                  S  S+
Sbjct: 92  LQGKTY----FFKLPYNVG----PKGTRSAGTIATADHC-----------TTGTGSGKSL 132

Query: 337 LFLMHLANKLELPPNGGGRAA-IVLSSSPLFNGRAGSGESEIRRWL 381
            +L+ + + +    NG G  A +V   + L +G     E  I+ + 
Sbjct: 133 AYLVLIVDYVLRHGNGRGIQAMVVYPMNALADGWKRKKERNIKGYF 178


>gi|308229511|gb|ADO24166.1| RM.AcuI [Acinetobacter calcoaceticus]
          Length = 1000

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 94/636 (14%), Positives = 189/636 (29%), Gaps = 119/636 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+++       R  + E+   +  +  + E    V  Y         L      N   
Sbjct: 200 LFLKQIN----TWRLLLGEEIYKYQPTIQENELNDIVQSYLNRII---FLRVCEDRNLET 252

Query: 99  NLESYIASFSDNAKAIFEDFDFSST--IARLEKAGLLYKICKNFSGIEL----------- 145
                  + S++  A+ + F  +     + L    L  +I ++ S +             
Sbjct: 253 YQTLLNFASSNDFSALIDKFKQADRCYNSGLFDQLLTEQIIEDISSVFWVIIKQLYYPES 312

Query: 146 --HPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATALLL 192
                     ++ NIYE  +                  +   +   TP  +++      +
Sbjct: 313 PYSFSVFSSDILGNIYEIFLSEKLVINQSRVELVKKPENLDRDIVTTPTFIINDILRNTV 372

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------- 241
            P      +   +     D  CG+G FL +    + D    + +                
Sbjct: 373 LPKCYGKTDIEILQLKFADIACGSGAFLLELFQLLNDTLVDYYLSSDTSQLIPTGIGTYK 432

Query: 242 -------------PHGQELEPETHAVCVAGMLIRRLESDPRR----------DLSKNIQQ 278
                          G + +         G+L++ LE +  +          DL  NI  
Sbjct: 433 LSYEIKRKVLLSCIFGIDKDLNAVEAAKFGLLLKLLEGEDVQSIANIRPVLPDLLDNILF 492

Query: 279 GSTLSKDL--------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           G++L +                F+  +F   + NPP+ K    +        +     + 
Sbjct: 493 GNSLLEPEKVELDHQVEVNPLDFSDLKFDVIVGNPPYMKS---EDMKNITPLELPLYKKN 549

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K  D   LFL      L+      G    ++ S     G       ++R  L + 
Sbjct: 550 YVSAYKQFDKYFLFLERGLALLK----EEGILGYIVPSKFTKVGAG----KKLRELLTDK 601

Query: 385 DLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERR---------GKVQLINA------- 427
             +++IV+   + +F      T L IL      + +          KV+  +A       
Sbjct: 602 GYLDSIVSFGANQIFQDKTTYTCLLILRKTPHTDFKYAEVRNLIDWKVRKADAMEFSSQQ 661

Query: 428 -----TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
                +D W  I +E          Q +++ DI     +  F+ +       Y  +    
Sbjct: 662 LSTLQSDAWILIPSELISVYHQILAQSQKLEDIVG--IDNIFNGIQTSANDVYIFVPTHE 719

Query: 483 PLRMSFILDKTGLARLEADIT---WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
                + + K    ++E +IT   ++  S     +     KP  + IYPY   ES V+  
Sbjct: 720 DTENYYFIKKGQEYKIEKEITKPYFKTTSGEDNLYTYRTFKPNARVIYPYTQTESSVELI 779

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                 +   +       + F+ +  ++D +  P T
Sbjct: 780 PLDEIREIFPLAYKYLMSLKFVLSSPKRDIKPRPKT 815


>gi|288926365|ref|ZP_06420288.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
 gi|288336892|gb|EFC75255.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
          Length = 1096

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVSAISDALASTNLQIRRCLDPSMGMGAF---AETFAKQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      ++    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGKGNIFVQNEPFEAIGEIEDKDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  +            GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHNYFFVKGLDCIK-------EGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            +    IRR+L++N  + + + LP+ LF     T++ + L +L  +  +E
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSSLFSDNAGTDVGSDLIVLQKQTGKE 305


>gi|237741482|ref|ZP_04571963.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429130|gb|EEO39342.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 2036

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 80/269 (29%), Gaps = 59/269 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D       E       + +P+C  G F+          G+  K       +G EL+
Sbjct: 534 KVVIDNIYTKLIEFGFKEGRILEPSCAVGNFI----------GNLPKELDSSQVYGVELD 583

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +               +   ++  Q     +  F+   F   + N PF       
Sbjct: 584 NISGNIAK-------------QLYPQSEIQVKGFEETNFSNNFFDIAIGNVPF------- 623

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                        G F     +    + L   +   K       GG  A + SS  L   
Sbjct: 624 -------------GNFKILDREYDRYNFLIHDYFFAKTIDKVKSGGIIAFITSSGTL--- 667

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425
                +  +R++L E   +   V LP  +F       + + +  L        R K+Q +
Sbjct: 668 --DKKDKSVRKYLGERCELLGAVRLPNSVFKGVAGAEVTSDILFLKK------RDKIQEL 719

Query: 426 NATDLWT--SIRNEGKKRRIINDDQRRQI 452
           +    +     +N  K  +   D+    I
Sbjct: 720 DNETWYEIAEDKNGIKYNKYFVDNPEMII 748


>gi|15828552|ref|NP_325912.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089494|emb|CAC13254.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma
           pulmonis]
          Length = 127

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +WK  + + G+     +  +I+    L+ L    +       +++ +    
Sbjct: 8   TNLNEIKEKLWKACDQMRGNISSEQYMHIIIAIIFLKTLSDKKDYAYQQFSKEFESESDE 67

Query: 66  NI--------DLESFVKVAGYSFYNTSEYSLSTL 91
                     D   F+   G  F   SE S   +
Sbjct: 68  KRLKKWDIIKDDLEFLDKYGIKFLVPSEASWEEI 101


>gi|331701314|ref|YP_004398273.1| adenine-specific DNA methylase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128657|gb|AEB73210.1| adenine-specific DNA methylase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 336

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 87/277 (31%), Gaps = 41/277 (14%)

Query: 138 KNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           K  + I  + +PD           +  + +     +  A   +TP         ++    
Sbjct: 58  KKLTNIYADFNPDDFTAETFRKAIQMAVLKAIRVDTIQANYQLTP----DTIANVIGYII 113

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
             +F +   +  ++ DP  GT   LT   + +        I       G E +     + 
Sbjct: 114 AGIFHDRKEL--SILDPAMGTANLLTAIYHQLQTS-----IGVTPTISGIENDDAMFELA 166

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              + ++++ ++             T+   L         +S+ P G         ++  
Sbjct: 167 ADSVELQKIHAELF--------HEDTIQNVLAPV--VDAVVSDLPIGYY------PIDAN 210

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            K         G    S+    ++ HL  +  +     G     L  S LF     S   
Sbjct: 211 AK---------GFATHSETGHSYVHHLLIEFGMKHVLPGGFGFFLVPSQLF---QTSEAK 258

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           ++ +W+     ++ ++ LP +LF        + IL N
Sbjct: 259 QLLKWMQGKIYLQGLLNLPKELFANAAAQKAILILQN 295


>gi|303235670|ref|ZP_07322277.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
 gi|302484117|gb|EFL47105.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
          Length = 1452

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 75/245 (30%), Gaps = 52/245 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHNPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L         K  +       +      F   +
Sbjct: 157 KDLLT----------------GTILRHL------YPGKKTRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SN PFG     D    + E  ++   GR                 +   K       GG 
Sbjct: 195 SNIPFG-----DIAVFDPEFQRSDSFGRR--------SAQKAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSTKTSVRNELFSKADLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 RKTEE 417
             +++
Sbjct: 297 NLSKK 301


>gi|10957433|ref|NP_051667.1| hypothetical protein DR_B0137 [Deinococcus radiodurans R1]
 gi|6460862|gb|AAF12566.1|AE001826_35 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 609

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 45/177 (25%)

Query: 130 AGLLYKICKNFSGIELHPD-------TVPDRVMSNIYEHLIR---------RFG-----S 168
               Y   +  S I ++          +    + +IYE L+          RF       
Sbjct: 369 NDAFYGAVRALSEISVNGSLRPVNYAGLDSEELGSIYESLLELVPRIEPGPRFSLTVLPG 428

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPG------MIRTLYDPTCGTGGFL 220
              +    + TP  ++ L     LDP  +DA+  + P           + DP CG+G FL
Sbjct: 429 NERKSTGSYYTPGSLIDLLLDSALDPVIEDAVRDKLPEDAIAALKGLKVIDPACGSGHFL 488

Query: 221 TDAMNHVADCGSHHKIPPIL----------------VPHGQELEPETHAVCVAGMLI 261
             A   +    +  +    L                  +G ++ P    +    + +
Sbjct: 489 IAAARRIGARLAELEEETSLPSPRALRKATRTVIAHCIYGADINPMAIELAKVALWL 545


>gi|260497888|ref|ZP_05816007.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196554|gb|EEW94082.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 2036

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 80/269 (29%), Gaps = 59/269 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D       E       + +P+C  G F+          G+  K       +G EL+
Sbjct: 534 KVVIDNIYTKLIEFGFKEGRILEPSCAVGNFI----------GNLPKELDSSQVYGVELD 583

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +               +   ++  Q     +  F+   F   + N PF       
Sbjct: 584 NISGNIAK-------------QLYPQSEIQVKGFEETNFSNNFFDIAIGNVPF------- 623

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                        G F     +    + L   +   K       GG  A + SS  L   
Sbjct: 624 -------------GNFKILDREYDRYNFLIHDYFFAKTIDKVKSGGIIAFITSSGTL--- 667

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425
                +  +R++L E   +   V LP  +F       + + +  L        R K+Q +
Sbjct: 668 --DKKDKSVRKYLGERCELLGAVRLPNSVFKGVAGAEVTSDILFLKK------RDKIQEL 719

Query: 426 NATDLWT--SIRNEGKKRRIINDDQRRQI 452
           +    +     +N  K  +   D+    I
Sbjct: 720 DNETWYEIAEDKNGIKYNKYFVDNPEMII 748


>gi|319938318|ref|ZP_08012715.1| hypothetical protein HMPREF9488_03551 [Coprobacillus sp. 29_1]
 gi|319806611|gb|EFW03269.1| hypothetical protein HMPREF9488_03551 [Coprobacillus sp. 29_1]
          Length = 1397

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 73/279 (26%), Gaps = 62/279 (22%)

Query: 138  KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            + F   +         + + + E   + +          F TP  V+      L      
Sbjct: 865  QAFDEKDSSWSNEYSILKNLLDE---KEYSQARGSTLTAFYTPPVVIRSMYKAL------ 915

Query: 198  LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
              +        + +P+CG G F+          G           +G EL+  +  +   
Sbjct: 916  --ENMGLKTGNILEPSCGVGNFI----------GMLPDSLEDCKLYGVELDSISGRIAR- 962

Query: 258  GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                       ++          T   + F    F   + N PFG               
Sbjct: 963  --------QLYQKSTVAVQGYEDTNLPNSF----FDVSVGNVPFGD-------------- 996

Query: 318  NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                  F     K      L   +   K       GG  A + S   L           +
Sbjct: 997  ------FKVLDKKYDKHKFLIHDYFFAKTLDKVRPGGVIAFITSKGTLDKENPS-----V 1045

Query: 378  RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            R+++ +   +   + LP + F     T + + +  L  R
Sbjct: 1046 RKYIAQRADLLGAIRLPNNTFKANAGTEVTSDIIFLQKR 1084


>gi|319644055|ref|ZP_07998614.1| DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317384403|gb|EFV65371.1| DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 1665

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          +       FK++   +R   +P+ G GGFL  AM            
Sbjct: 99  FYTP----KFLVQAVTKQIHTTFKDNGLQMRLFLEPSAGIGGFLPVAM------------ 142

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +P      V+G+++  L  +     +       T+ +  F   +F    
Sbjct: 143 -SDTCGYAIEKDP------VSGLILSLLNDNTITRTAGFE----TIDEQGFKHTKFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG     D    E   K G   +           +     +   K     N GG  
Sbjct: 192 SNIPFGNFRVFDA---ELWKKGGIYEQ----------ATKTIHNYFFVKAMELLNEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S               +R +L+ +  + + + LP  LF +T+   + + L +    
Sbjct: 239 AFVTSRGVADTPSN----KFVRDYLVSHADLISAIRLPDMLFMQTSGIEVGSDLLVFQKH 294


>gi|195867898|ref|ZP_03079897.1| N-6 DNA Methylase family protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|195660475|gb|EDX53733.1| N-6 DNA Methylase family protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
          Length = 543

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/391 (13%), Positives = 128/391 (32%), Gaps = 61/391 (15%)

Query: 84  SEYSLSTLGSTNTRNNLESYI---ASFSDNAKAIFEDFDFSSTIARLEK-AGLLYKICKN 139
            E+ +  + + N +N     I         ++   ED+ +   I  LEK   L+ +    
Sbjct: 7   YEFQMEDIKTKNDKNIKSKIILSQNEIDKFSRYNIEDYQYDIEILGLEKTWNLICEYILL 66

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F     + + +       +YE  +        + +  + TP DV  +    L+  D    
Sbjct: 67  FGE---NENFLNINNFGEMYEIGLAIRDKHQKKTSGQYYTPDDVAKVMAKWLIKSD---- 119

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    + D  CGTG  +   ++ +    + + I      +  + +     +C   +
Sbjct: 120 ------GINVCDVGCGTGKLILTYLDLIGYENARNIIKKGN-LYLYDFDNIALKICKTSI 172

Query: 260 LIR-RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
            ++  ++     +          +     +       +SNPP+    E     +++E   
Sbjct: 173 ALKYGIDIMNNINDINCDFLNEKIILPQDS-----KVISNPPYSIIHE-----IKEEWDK 222

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            ++              +L    L +          ++ ++++    F+  +      +R
Sbjct: 223 TQV--------------LLETKELYSSFMEKIFLQSKSVVIITP---FSFISSKKFFSLR 265

Query: 379 RWLLENDLIEAIVA---LPTDLFFR--TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           + +        IV+   +P ++F+     I       ++  T   R  +     +  +  
Sbjct: 266 KLMCSTGNGF-IVSFDNVPGNIFYGRKHGI------FNSNTTNSVRASITFFQKSSNYYG 318

Query: 434 IRNEGKKRRIINDDQ---RRQILDIYVSREN 461
            R     R    + +     +IL+ Y+S++N
Sbjct: 319 FRLSPLIRFKQTERENLLNNEILESYISKKN 349


>gi|149370586|ref|ZP_01890275.1| type II restriction enzyme, methylase [unidentified eubacterium
           SCB49]
 gi|149356137|gb|EDM44694.1| type II restriction enzyme, methylase [unidentified eubacterium
           SCB49]
          Length = 1109

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 71/468 (15%), Positives = 133/468 (28%), Gaps = 120/468 (25%)

Query: 39  TLLRRLECALEPTRSAVREK-YLAFGGSNIDLESF--VKVAGYSFYNTSEYSLSTLGSTN 95
            + R L       R  +             D   F   +     F     +       T 
Sbjct: 260 LIDRYLFIFFAEDRGLLPANSTQQILDKWKDDVDFGDDRPLYTLFKQYFNFLDQGRAGTA 319

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            R  + +Y        K   +  D  S         LLYK     +  +     V   ++
Sbjct: 320 KRAEIYAYNGGLFKEDK-TLDSLDIDS--------DLLYKHTSKLAAYDF-ESQVDVNIL 369

Query: 156 SNIYEHLIRRFGSEVS--------------EGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +I+E+ +    S  +              +    F TP+ +        +       K 
Sbjct: 370 GHIFENSLNEIESVNAEIEGGDFDKQKSKRKKDGVFYTPKYITKYIVENTIGKLCDEKKT 429

Query: 202 SPGMIR--------------------------------TLYDPTCGTGGFLTDAMNHVAD 229
             G                                   T+ DP CG+G FL  A++ +  
Sbjct: 430 ELGFKEEEYFKGRKNRQKATITKLVNILDTYRDWLLQLTICDPACGSGAFLNQALDFLIK 489

Query: 230 CGSHHKIPPILV------------------PHGQELEPETHAVCVAGMLIRRLESDPR-R 270
             S+       V                   +G +L  E+  +    + +R  +   +  
Sbjct: 490 EHSYIDELKTKVLGGGLQFSDIENTILENNIYGVDLNEESVEIAKLSLWLRTAQPRRKLN 549

Query: 271 DLSKNIQQGST-------------LSKDLFT---------GKRFHYCLSNPPFGKKWEKD 308
           +L+ NI+ G++               ++ F          G  F   + NPP+ +    D
Sbjct: 550 NLNSNIKCGNSLIDSKTVAGDKAFNWEEQFPKVFDPSSGSGGGFDVVIGNPPYVRVQNLD 609

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            + V+   +N           K   G +   +    K+       G+A+ + SS  +   
Sbjct: 610 SNLVDYYFEN----------YKSPKGKLDLSILFFEKVFSLIKTEGKASFISSSQWMQTD 659

Query: 369 RAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNR 413
                   IR  L E  ++E I+   +LP  +F        ++ L+N 
Sbjct: 660 YG----ENIRNILSEKKILE-IINFGSLP--VFENVETYPAIFFLTNN 700


>gi|288958832|ref|YP_003449173.1| hypothetical protein AZL_019910 [Azospirillum sp. B510]
 gi|288911140|dbj|BAI72629.1| hypothetical protein AZL_019910 [Azospirillum sp. B510]
          Length = 1013

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                V   V+  +YE LI R   +   G  ++ TP     LA  ++    D   ++   
Sbjct: 284 FRLSEVESDVLKILYESLIDR---DERHGLGEYYTP---DWLAAKVVRHAVDRPLEQ--- 334

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
               + DP CG+G FL  A+ H         + P 
Sbjct: 335 ---RVMDPACGSGTFLFHAIRHFLAEAEEAGLEPD 366


>gi|126651362|ref|ZP_01723569.1| hypothetical protein BB14905_12370 [Bacillus sp. B14905]
 gi|126591891|gb|EAZ85974.1| hypothetical protein BB14905_12370 [Bacillus sp. B14905]
          Length = 309

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 38/218 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP  GTG  L   MN +            +   G E++     +  A        +D
Sbjct: 103 SIMDPAVGTGNLLLTVMNLL---------DGKVEATGVEVDELLIRLAAA-------TAD 146

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +Q +               + + P G  +  ++ A+E E    E       
Sbjct: 147 LTEQPISLYRQDALQD---LLANPVDAVVCDLPVG-YYPNEEIALEYELCAPEGM----- 197

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                  S    + +   +     GG      L+ S LF+        ++ +++ ++  I
Sbjct: 198 -------SYAHHLFIEQSMNYTKEGGYL--FFLAPSHLFDSEQS---KQLHKYIQKHAWI 245

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
           +AI+ LP  +F   ++   + IL  + K  +   +V L
Sbjct: 246 QAIIQLPDSMFANKSLEKSIVILQKQSKECKSPKEVLL 283


>gi|328676572|gb|AEB27442.1| Adenine specific DNA methyltransferase [Francisella cf. novicida
           Fx1]
          Length = 1030

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 59/415 (14%), Positives = 122/415 (29%), Gaps = 94/415 (22%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +     +     A    +  L++F +         S   L  L       N++  I    
Sbjct: 180 DIYAQTLAYGMFAARYHDEVLDTFSRQEAAEKIPKSNPFLRRLFDYVAGTNIDDRIKHTV 239

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           DN   +F   D    +++  ++        +F                  YE  +  + S
Sbjct: 240 DNLADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDS 281

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------------- 208
           ++ +    + TP+ VV      + +   + F  S G+  T                    
Sbjct: 282 KLRKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRAKSGY 341

Query: 209 -----------LYDPTCGTGGFLTDAMNHVADCG---------SHHKIPPILVPHGQELE 248
                      + DP  GTG FL +A+  + +            + +   I   +G EL 
Sbjct: 342 KQIEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELL 401

Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNI----------QQGSTLS------------- 283
             ++A+      ML+      P+   S+                T +             
Sbjct: 402 MASYAMAHLKLYMLLTDTGYKPKSTQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEA 461

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD--GSMLFLMH 341
             +         + NPP+        + ++   K+ +       +    D      +  H
Sbjct: 462 NQIKKDTPVMVVMGNPPYSVSSSNKGEWIQDLIKDYKKNLNERKINLDDDYIKFTRYGQH 521

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
             ++      G G  A + ++S +     G    ++R+ LLE+     I+ L  +
Sbjct: 522 YIDR-----TGEGVLAYISNNSFI----DGITHRQMRKSLLESFDKIYIIDLHGN 567


>gi|288961216|ref|YP_003451555.1| adenine specific DNA methyltransferase [Azospirillum sp. B510]
 gi|288913524|dbj|BAI75011.1| adenine specific DNA methyltransferase [Azospirillum sp. B510]
          Length = 1139

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 13/113 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL---LDPDDALFKESPGMIRTLYDP 212
              YE  +  F  E+ +    + TP +VV      +   L  +  +          + DP
Sbjct: 328 QYFYEPFLAAFDPELRKDLGVWYTPPEVVTYMVERVDRVLRGELGVKAGLADPRVHVLDP 387

Query: 213 TCGTGGFLTDAMNHVADCGSHH----------KIPPILVPHGQELEPETHAVC 255
            CGTG F+   ++ +    +            K        G E+ P    + 
Sbjct: 388 CCGTGSFVIAVLDKIRRNLAEGGAGALTALRLKEAATERVFGFEIMPAPFVIA 440


>gi|260912381|ref|ZP_05918929.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633504|gb|EEX51646.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 2081

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 130/412 (31%), Gaps = 75/412 (18%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            IR   DP+ G G F   A       G         V    E +  T  +  A   +   
Sbjct: 125 QIRRCLDPSMGMGAF---AEIFARQAG---------VVDAMEKDLLTARISQA---LH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +       +      +L    ++    SN PFG     D+          E  R 
Sbjct: 168 --PYGKGNIFVRNEPFEAIGELENKDKYDLITSNIPFGDFMVYDR----------EYSRG 215

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L + S  +     +   K       GG  A + S   L + R  +    IRR+L++N
Sbjct: 216 KDTLKRES--TRAIHNYFFVKGLDCIKEGGLLAFITSQGVLDSPRNEA----IRRYLMQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
             + + + LP+ +F     T++ + L IL  +  +E                        
Sbjct: 270 SRLISALRLPSGMFSDNAGTDVGSDLIILQKQTGKE------------------------ 305

Query: 442 RIINDDQRRQILDIYVSRENGKFSRML--------DYRTFGYRRIKVLRPLRMSFILDKT 493
             I++   +Q ++     +    S +         D++   +R I   R L         
Sbjct: 306 --ISEGIEQQFVETVSVPKEEGSSVVFKHNSLFVGDWKDISHRTIATERILGTDPYGRPA 363

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE-AKTLKVKA 552
              R    I       L     L++ + + +++Y  G   + V+   ++ +  + L +  
Sbjct: 364 WEYRFTGGIE-ELAESLRTQLSLEMGQRIDRKLYETGIPMTEVEREAEAEKLLRKLGITI 422

Query: 553 SKSFIVAFINAFGRKDPRA-DPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
           S+           +    A + + D   + +P    TE E +    +   YF
Sbjct: 423 SREEDTEKTKTEDKGINDAYNLMPDSIRKQLPKLYSTEKELIGDKVAYARYF 474


>gi|171920945|ref|ZP_02696009.2| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|171903181|gb|EDT49470.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
          Length = 1871

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 120/423 (28%), Gaps = 64/423 (15%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D   +   E       + +P+ G G F+          G+          +G EL+
Sbjct: 152 KIVIDGVYSTLSEMGFKNGNILEPSMGVGNFI----------GNLPDEMSKSKFYGVELD 201

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +                   ++  Q     +  F+   F   + N PFG+     
Sbjct: 202 SVSGRIAKL-------------LYPESDVQVKGFEETSFSNNFFDVAIGNVPFGE----- 243

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                          F     + +  + L   +   K       GG  A + SS  +   
Sbjct: 244 ---------------FKVNDREYNRNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM--- 285

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER--RGKVQ 423
                +  IR+++         + LP D F     T + + +  L N   +E        
Sbjct: 286 --DKKDESIRKYINARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKNLAEDENGLTYNKY 343

Query: 424 LINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            ++  +  L +     G+  + +  +        ++ +EN   S        G R  K  
Sbjct: 344 FVDHPEQVLGSMREVSGRFGKTLTCEPI-----AFLGQENNMESLKDRIEIAGERISKDA 398

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           +   +  + D+        D+     + +    +       +++       E        
Sbjct: 399 KYEEIELLDDEVTSIPATDDVKNFSYTLIDDEVYYRENSLFIKREVSDKNKEKIKNYLEL 458

Query: 542 SNEAKTL----KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
           ++  K +    K   S++ I    +                        L E  N P + 
Sbjct: 459 NDALKDVIYKQKEDFSEAEIKESQDKLNAVYDNFSKKHGFVNNLSNTRALREDSNFPLVS 518

Query: 598 SIQ 600
           SI+
Sbjct: 519 SIE 521


>gi|297567700|ref|YP_003686671.1| hypothetical protein Mesil_3351 [Meiothermus silvanus DSM 9946]
 gi|296852149|gb|ADH65163.1| hypothetical protein Mesil_3351 [Meiothermus silvanus DSM 9946]
          Length = 1338

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 40/149 (26%)

Query: 153 RVMSNIYEHLI--------RRFGSEV----SEGAEDFMTPRDVVHLATALLLDP------ 194
             + ++YE ++         R+  E      + +  + TPR++V L     L P      
Sbjct: 389 EEIGHVYEEILALSPRLVEGRYSLESHLLERKSSGSYYTPRELVQLVVQEALAPVLEERL 448

Query: 195 ----DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------- 241
               +D   + S  +   + DP  G+G FL  A+ ++A   +  +               
Sbjct: 449 KAAGEDLEAQVSALLSLRVIDPAMGSGAFLISALEYLAQRLAELRQKANPQSEFARLYEE 508

Query: 242 ---------PHGQELEPETHAVCVAGMLI 261
                     +G +L P    +    + I
Sbjct: 509 ARHEVAARCIYGVDLNPMAVELAKLSLWI 537


>gi|268324633|emb|CBH38221.1| conserved hypothetical protein [uncultured archaeon]
          Length = 524

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 41/168 (24%)

Query: 153 RVMSNIYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++ N+YE  + +                EV +    + TP+ +V       +    A  
Sbjct: 328 EILGNVYEQFLGKVIRLTAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVENTVGKLIAGK 387

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---------------- 243
                    + DP CG+G FL  A  ++        +      +                
Sbjct: 388 TPEEIAPIKILDPACGSGSFLIGAYTYLLRYHLDWYVSNKPKKYKEAVFQVRENEWYLTT 447

Query: 244 ------------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                       G +++P+   V    +L++ LE + R  + + ++ G
Sbjct: 448 AEKKRILLDNIFGVDIDPQAVEVTKMSLLLKVLEHESRESIDQQMKLG 495


>gi|253572782|ref|ZP_04850182.1| BmhA [Bacteroides sp. 1_1_6]
 gi|304382595|ref|ZP_07365089.1| exopolyphosphatase [Prevotella marshii DSM 16973]
 gi|325858280|ref|ZP_08172557.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
 gi|251837682|gb|EES65773.1| BmhA [Bacteroides sp. 1_1_6]
 gi|304336220|gb|EFM02462.1| exopolyphosphatase [Prevotella marshii DSM 16973]
 gi|325483087|gb|EGC86071.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 1946

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 75/245 (30%), Gaps = 52/245 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+++      +L D               + +P+ G G F+   + H  +       
Sbjct: 105 FYTPKEITDTIADVLADYSVRPA--------RMLEPSAGVGVFVDSMLRHNPNADVMAFE 156

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L                 G ++R L         K  +       +      F   +
Sbjct: 157 KDLLT----------------GTILRHL------YPGKKTRTCGFEKIERPFNNYFDLAV 194

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SN PFG     D    + E  ++   GR                 +   K       GG 
Sbjct: 195 SNIPFG-----DIAVFDPEFQRSDSFGRR--------SAQKAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSTKTSVRNELFSKADLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 RKTEE 417
             +++
Sbjct: 297 NLSKK 301


>gi|315608513|ref|ZP_07883500.1| DNA methylase [Prevotella buccae ATCC 33574]
 gi|315249839|gb|EFU29841.1| DNA methylase [Prevotella buccae ATCC 33574]
          Length = 2077

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 114/390 (29%), Gaps = 59/390 (15%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G         +    E +  
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFARQAG---------IVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A            +       +      +L    ++    SN PFG     D+ 
Sbjct: 159 TARISQAM-------HPYGKGNIFVRNEPFEAIGELEDKDKYDLVTSNIPFGDFMVYDR- 210

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                    E  R    L + S  +     +   K       GG  A + S   L + R 
Sbjct: 211 ---------EYSRGKDTLKRES--TRAIHNYFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR--KTEERRGKVQLI 425
            +    IRR+L++N  + + + LP+ LF     T + + L +L  +  K      + Q I
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGLFSENAGTEVGSDLIVLQKQSGKIISEGIEQQFI 315

Query: 426 N-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE----NGKFSR----------MLDY 470
              +       +   K   + D + + I    ++ E       + +          + D 
Sbjct: 316 ESVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFDGSIEDL 375

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                 ++ +    R    L +TG+   E +    +     +      +   +    P  
Sbjct: 376 AESIRTQLSLEVEQRFDRKLYETGIPMTEEE----RQKEAEKQLQKLGITVDLPNEEPKT 431

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             E+    ++  +  +    K   +     
Sbjct: 432 DKEADNAYNLMPDSIRKQLPKLYSTEKKLI 461


>gi|313887008|ref|ZP_07820708.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923534|gb|EFR34343.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 2056

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 38/214 (17%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           +   DP+ G G F       V             +    E +  T  +  A   +     
Sbjct: 127 KRCLDPSSGMGAFAETFAKQVG------------IVDALEKDLLTARISQA---LH---- 167

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                      +       L   +++    SN PFG     D+          E  R   
Sbjct: 168 PYGEGNIFVRNEPFEAIAPLEETEKYDLVTSNIPFGDFMVYDR----------EYSRGND 217

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              K S  +     +   K       GG  A + S   L    A   E  IRR+L++N  
Sbjct: 218 LFKKES--TRAIHNYFFVKGLDCTREGGLIAFITSQGVL---DAALNEP-IRRYLMQNSR 271

Query: 387 IEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           + + + LP+ +F     T + + L +L  +  +E
Sbjct: 272 LISAIRLPSGMFNEQAGTEVGSDLIVLQKQSGKE 305


>gi|294508850|ref|YP_003572909.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
 gi|294345179|emb|CBH25957.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
          Length = 369

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 19/137 (13%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +   PR    L   +          ++P    TL DP CG+G  L +A +  AD      
Sbjct: 189 EGYQPRA--ALKANVAYALLRLAHLDAPP--NTLLDPFCGSGTILLEAADLWADT----- 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +   E  +     + +  L                T     F        
Sbjct: 240 -----QCYGSDWNEEAVSGARTNVDLAGLSDRIAIRKGDVWHLDET-----FADVTADLI 289

Query: 296 LSNPPFGKKWEKDKDAV 312
           ++NPPFG +     D  
Sbjct: 290 VTNPPFGVRMASSMDFY 306


>gi|254522810|ref|ZP_05134865.1| hypothetical protein SSKA14_1941 [Stenotrophomonas sp. SKA14]
 gi|219720401|gb|EED38926.1| hypothetical protein SSKA14_1941 [Stenotrophomonas sp. SKA14]
          Length = 1484

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 74/285 (25%), Gaps = 51/285 (17%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
               +  R A  E Y       + L+   +      +      +  L     R  L +  
Sbjct: 319 SAEEQAARRAYAEGYALAHLRELCLKRRARTRHDDQWQAIRIVIRGLARGEPRLALPALG 378

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEH 161
             F+       +     +T        L + +     G  L P    +     + ++YE 
Sbjct: 379 GLFAPEQCPDLDTASLDNTHLLTALQHLRWAVVAQGKGSSLTPVDYRNMGPEELGSVYES 438

Query: 162 LI---------------------RRFGSEVSEGAEDFMTP----RDVVHLATALLLDPDD 196
           L+                             +    + TP    ++++  A   +++   
Sbjct: 439 LLELVPTIDLPARTFGFVGRTEEGSTAGNARKLTGSYYTPDSLVQELIKSALEPVIEQRL 498

Query: 197 ALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV------------ 241
           A    +P        + DP CG+G FL  A   +A+  +  +                  
Sbjct: 499 AANPGNPTAALLAIRVIDPACGSGHFLLAAARRLAEKLAQLRSLEGGQEGAIQPQDYRHA 558

Query: 242 --------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                    +G +  P    +    + +   E         +  Q
Sbjct: 559 LREVVTHCIYGVDRNPMAIELARMALWLEGYEEGRPLGFLDHHLQ 603


>gi|163783014|ref|ZP_02178009.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881694|gb|EDP75203.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 446

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 81/254 (31%), Gaps = 35/254 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  VV     L+ D               + +P      FL     +    
Sbjct: 18  RKDFGIFFTPDWVVDFTIGLIEDEGLE------FDNLKILEPAASGCQFL-----YGVKK 66

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +   G E+  E         +     SD    +  +     T        +
Sbjct: 67  NRRDIFTKAIRKVGVEVNREV--------IEHVHASDGITIVHHDYLLWDT-------EE 111

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           R+   + NPP+G     D   ++ ++K  E  +          G          K     
Sbjct: 112 RYDLIIGNPPYGIPSLSDHYTIKIDNKTKEKYKKVFETWH---GKYNVYGAFIEKSIKLL 168

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+   ++ ++ +          ++R++L EN   E I+ + +++F      T + +L
Sbjct: 169 KDNGQLLFIVPATFMILDE----FKKLRKFLSENGKTE-IIYMGSEVFKPEADVTTV-VL 222

Query: 411 SNRKTEERRGKVQL 424
             RK+ E + K++L
Sbjct: 223 KFRKSREEKNKLKL 236


>gi|166365645|ref|YP_001657918.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166088018|dbj|BAG02726.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 1154

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFK 200
           E        + +   YE  ++ F  ++ +    + TP ++V    A    +L  +  +  
Sbjct: 319 EFFRQFDEGQAVQYFYEPFLQAFDPDLRKELGVWYTPPEIVRYMVARVDRVLREELNIED 378

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------KIPPILVPHGQELEPE 250
                   + DP CGTG +L + + ++ D    +          K   I    G E+   
Sbjct: 379 GLANPDVYILDPCCGTGAYLVEVLRYITDTLQENGAGALAMALVKKAAIERIFGFEILTA 438

Query: 251 THAVC 255
              V 
Sbjct: 439 PFVVA 443


>gi|310827499|ref|YP_003959856.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
 gi|308739233|gb|ADO36893.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
          Length = 2497

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 71/265 (26%), Gaps = 58/265 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   ++      +              I  + +P CGTG F+   
Sbjct: 1002 SEYAAAEGSILNAHYTDPGIISAMYEAVQLFG--------FSIGNVLEPACGTGRFIGTM 1053

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               + +             +G EL+  +  +  A          P+ +++ N  + +   
Sbjct: 1054 PMALRES----------KVYGVELDELSGRMAKA--------LYPKAEITINGFENTHYP 1095

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +      F   + N PF                    G +     K    +     +  
Sbjct: 1096 INF-----FDLAIGNVPF--------------------GNYKVADTKYDKLNFQIHDYFI 1130

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             K       GG  A + S   +    +      +R+++     +   V LP + F   N 
Sbjct: 1131 AKTLDLVRPGGIIAFITSKGTMDKQNSS-----VRQYIARRAELIGAVRLPNNAFSGANT 1185

Query: 404  ATY--LWILSNRKTEERRGKVQLIN 426
                 +      ++      +  I+
Sbjct: 1186 KVTADVLFFQKLESMRDLNAIDWID 1210


>gi|199597330|ref|ZP_03210761.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus HN001]
 gi|199591846|gb|EDY99921.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus HN001]
          Length = 337

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         ++ P  +  + D   G+G  L   MN +     H +    +  +G +
Sbjct: 104 MASLATFMATVFDQQQPSQL-KVADLAVGSGNLLFAVMNQL-----HKERDVTVKGYGVD 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      ++ L+ +     +           D    K     +S+ P G    
Sbjct: 158 NDEALLAVAGMSSSLQHLDVELFHQDAL----------DGLLFKDIDVVVSDLPVGYYPV 207

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            ++                              + +   +++   GG    +    S +F
Sbjct: 208 DERAKKFATAAKKGHS-------------YAHHLLIEQSMKVLKPGG--LGMFYVPSRVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424
                +G +    WL E    + ++ LP D F        L IL     + +R  +V L
Sbjct: 253 QSEEAAGLTA---WLAEKTYFQGLLNLPDDFFADKQAEKSLLILQKPSPDVKRAKQVLL 308


>gi|116873011|ref|YP_849792.1| hypothetical protein lwe1595 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741889|emb|CAK21013.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 332

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  ++R +  
Sbjct: 121 SILDPACGTANLLTTVINQL-----ELKGDVTVHASGVDVDDLLISLALVGADLQRQKMT 175

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                                       +S+ P G          ++  K  EL R    
Sbjct: 176 LLHQDGLANLLVD----------PVDIVISDLPVGYY------PDDENAKTFELCR---- 215

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S    LF+       +     GG    ++  +          +  I++    N  I
Sbjct: 216 EEGHSFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK----NGHI 267

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
           E I+ LP  LF        + IL       +  K V L N + L
Sbjct: 268 EGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311


>gi|215401130|ref|YP_002332385.1| putative methyltransferase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260481|gb|ACJ64611.1| gp22 [Staphylococcus phage phiSauS-IPLA35]
          Length = 229

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 15/165 (9%)

Query: 159 YEHLIRRFGSE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           Y+     F  E    +  +   TP+ +  L   L+ D                Y+P  GT
Sbjct: 49  YDWFHEYFQDEHANRKKHKQDFTPKSISKLLVELVSDKQGDY-----------YEPAAGT 97

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRR-DLSK 274
           GG + +  N+     S     P +  +  +EL   T    +  M+IR +     + D+  
Sbjct: 98  GGIVIEKWNNDRMQHSPFDYLPSMYFYIAEELSDRTIPFLLFNMIIRGMNGLVVQCDVLT 157

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
               G+   ++          L+  P+ +  EK+ +    EH+  
Sbjct: 158 REAYGAWFIQNDKNDHLGFSSLNRLPYTEDIEKELNIKFVEHRYP 202


>gi|256845761|ref|ZP_05551219.1| helicase [Fusobacterium sp. 3_1_36A2]
 gi|256719320|gb|EEU32875.1| helicase [Fusobacterium sp. 3_1_36A2]
          Length = 2122

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 67/256 (26%), Gaps = 59/256 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             +          F TP         +++D               + +P+ G G F+   
Sbjct: 619 EEYTKARGSTLTAFFTP--------KIVIDNIYKGLDNLGFKEGKILEPSSGIGNFI--- 667

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  GS  +       +  EL+  +  +                   +   Q     
Sbjct: 668 -------GSIPEKMENSKFYSVELDSLSGRIEKT-------------LYPQANIQIDGFE 707

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   + N PFG                     F     +    + L   +  
Sbjct: 708 NTDFKNNFFDVAVGNVPFGD--------------------FKVNDKEYDRNNFLIHDYFF 747

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + S+  +        +  IRR++ E   +   V LP + F     
Sbjct: 748 AKSIDKVRPGGVIAFITSNGTM-----DKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 802

Query: 401 TNIATYLWILSNRKTE 416
           T + + +  L  R+  
Sbjct: 803 TEVTSDIIFLKKREER 818


>gi|291545599|emb|CBL18707.1| hypothetical protein CK1_03810 [Ruminococcus sp. SR1/5]
          Length = 1833

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 72/253 (28%), Gaps = 59/253 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F T   V+     +L +               + +P+CG G F+   
Sbjct: 398 EEYSAARASTLNAFYTSPTVIRSMYEVLENMGLKQGN--------ILEPSCGVGNFMGLI 449

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +               +G EL+P +  +               +   KN        
Sbjct: 450 PESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFE 486

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +    F   + N PFG     D+   ++ H                    +   +  
Sbjct: 487 ETSYPDSFFDCVIGNVPFGAYQVSDR-RYDRHH-------------------FMIHDYFI 526

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
            K       GG  A+V SS  +           +R+++     +   + LP + F     
Sbjct: 527 AKSLDLVRPGGVVAVVTSSGTMDKQNP-----VVRQYIANRAELLGAIRLPNNAFQRNAN 581

Query: 401 TNIATYLWILSNR 413
           T++ + +     R
Sbjct: 582 TSVVSDILFFQKR 594


>gi|313125635|ref|YP_004035905.1| type i restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312292000|gb|ADQ66460.1| type I restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 719

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 94/310 (30%), Gaps = 36/310 (11%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           NT   S + L +++ R   ++   S  D A            +A +  A  L  +    +
Sbjct: 73  NTPNTSFNELDASDAREAFQTARESTGDIAFTE----YLLDELAWITSAEDLSSVLD--A 126

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
              L     P   +  ++E +      E       F TP ++  +     +         
Sbjct: 127 RQYLLNSDNPAETIGKLFEQI---TPQESRRKLGQFRTPPEIADIMATWCVQE------- 176

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 T+ DP  G G     A        S      +   HG +L     A+ +    +
Sbjct: 177 ---STDTVLDPGVGAGALSAPAYKRKLKLSSDA---SLATMHGIDLNEL--ALVMGATTL 228

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           R L+     +L                       +SNPP+ +  E     + +E+K    
Sbjct: 229 RLLDHGGPHNLQTG---DFLELSPEDIDAEVDAVISNPPYSRHHE-----LSEEYKTRVN 280

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            +    L            +     E   + GGRA+ +  S  L      S    ++++L
Sbjct: 281 TQIEQELGCDVSALSPMYAYFYFHAEKFLSPGGRASYITPSEFLETNYGES----LKQYL 336

Query: 382 LENDLIEAIV 391
                + A+V
Sbjct: 337 TNEFNLNALV 346


>gi|172064554|ref|YP_001812204.1| hypothetical protein BamMC406_6530 [Burkholderia ambifaria MC40-6]
 gi|171998039|gb|ACB68955.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 345

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  L        +  +  F TP  V  L   L         ++   +     +P
Sbjct: 114 DVLGETYMML-----ELGNARSGQFFTPYHVSRLMAMLTTGDGQPYIQQHGFLRMR--EP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHK 235
            CG GG +      +A  G +++
Sbjct: 167 ACGAGGMVIATGESLAAAGHNYQ 189


>gi|313682812|ref|YP_004060550.1| hypothetical protein Sulku_1689 [Sulfuricurvum kujiense DSM 16994]
 gi|313155672|gb|ADR34350.1| hypothetical protein Sulku_1689 [Sulfuricurvum kujiense DSM 16994]
          Length = 528

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 135/452 (29%), Gaps = 108/452 (23%)

Query: 38  FTLLRRLECALEPTRSAVRE-KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS--TLGST 94
              LR ++ AL    + V   +  +      ++ +     GY+F  T  + L    + S+
Sbjct: 74  LIALRFMDAALINEIAVVSPIERQSLPQLYNEVRAGHVPEGYTFDRTKFFDLIDGKIQSS 133

Query: 95  NTRNNLESYI-----ASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           +  N   + +      ++ ++   +FE   D++  +   +  G      +    +E   D
Sbjct: 134 DPENEAYAMLFIAACNAWHEHLPFMFEKIADYTELLIPDDLLGAASLRARVVDALE-AED 192

Query: 149 TVPDRVMSNIYEHLI--RRFGSEVSEGA---------EDFMTPRDVVHLATAL------- 190
                V+  +Y+  I  ++  +   +G              TP  +V             
Sbjct: 193 CQDVEVIGWLYQFYIGEKKDAAMAKKGKYNTSEIPAVTQLFTPDWIVRYLVENSLGRIWM 252

Query: 191 --------------LLDPDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNHVADCGSHH 234
                          ++ DDA    +   +   TL DP CG+G  LT A + +       
Sbjct: 253 ASRPNSKLRESMRYYVEHDDATTPITVSSVEELTLLDPCCGSGHMLTYAYDLLEKIYEEE 312

Query: 235 KIPPILV--------PHGQELEPETHAVCVAGMLIR---RLESDPRRDLSKNIQQGSTLS 283
             P   +         +G +L+    ++    + ++         R+ +  NI +     
Sbjct: 313 GYPKSDIPGLILTHNLYGCDLDERAASLAAFALTMKARLSHRRFFRKSVRPNIVELLPYD 372

Query: 284 KDLFTGKR-------------------------------------FHYCLSNPPFGKKWE 306
            D F   +                                     FH  ++NPP+     
Sbjct: 373 DDRFANIKDLGSLIRLKPSTAKLDEGVFAYSNREFTLQERILGGDFHCVVTNPPYMGGKG 432

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            +    +          F       S   +        +       GG AA V   S +F
Sbjct: 433 MNTVLAD----------FVKKQYPDSKADL--FACFIERSLDLTKSGGYAAAVTMHSWMF 480

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                S    +R  LLEN  I+ +V L    F
Sbjct: 481 L----SSYEALRVKLLENHQIDTLVHLGARAF 508


>gi|300772424|ref|ZP_07082294.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760727|gb|EFK57553.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1810

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 52/245 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V+   +  L + D  + K          +P+ G G F   + +           
Sbjct: 105 FYTPPQVIDAISETLRESDVNIQK--------FLEPSAGIGSF-IQSFSENQQTKVTAYE 155

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +L   G+ L+   H    + + +   E  P ++ +                  +    
Sbjct: 156 KDLLT--GKILK---HLYPESNIRVSGYEEIPEKEQNS-----------------YDVVA 193

Query: 297 SNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           SN PFG     D   +  K+    +  R       +    ML               GG 
Sbjct: 194 SNIPFGDTSVFDLTFSRSKDPAKIQAARSIHNYFFLKGNDML-------------REGGL 240

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
              + S   L +         IRR L++++ + ++V LP +LF     T + + L IL  
Sbjct: 241 QVFITSQGILNSPNNEP----IRRALMKSNHLVSVVRLPNNLFTEYAGTEVGSDLIILQK 296

Query: 413 RKTEE 417
              ++
Sbjct: 297 NTAKQ 301


>gi|222083249|ref|YP_002542652.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738629|gb|ACM39467.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1697

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 60/221 (27%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F         D              G EL+P T  +         
Sbjct: 190 WRGGRVLEPGIGTGLFPALMPEEYRDT---------SYVTGIELDPVTARIARL------ 234

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     DL     +   + NPPF  +      +V  + +   LG 
Sbjct: 235 ------LQPKSRIITGDFARTDLSAI--YDLAVGNPPFSDR------SVRSDRQYRALG- 279

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                       +    +   +       G  AA V S   +      +     R  + +
Sbjct: 280 ------------LRLHDYFIARSIDLLKPGALAAFVTSHGTMDKADTTA-----REHIAK 322

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +  + A + LP   F     T++   +     RK  E  G 
Sbjct: 323 SADLIAAIRLPEGSFRRDAGTDVVVDILFFRKRKAGEPEGD 363


>gi|227891625|ref|ZP_04009430.1| adenine-specific methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227866541|gb|EEJ73962.1| adenine-specific methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 339

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 111/347 (31%), Gaps = 45/347 (12%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRF 166
           D      E+    +    +E      K       +  + +   +       + + LI + 
Sbjct: 32  DALIETLENI-LDNNQVHVEDDKPDKKTVAKLKELYADSNIKNLETDEKRQVIQLLILKS 90

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE    A   MTP  +  + + L+    D+        + T+ D   GTG  LTD  N+
Sbjct: 91  YSEDKIQANHQMTPDSIGMIVSYLIELFADS------KKVLTITDICVGTGNLLTDIYNN 144

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +       K    +  +G + +    A+           S   +   +NI+     + + 
Sbjct: 145 L------DKQNKNIQAYGIDNDDTLLALA----------SISTQFQKQNIELYHQDAIEE 188

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +    + + P G     DK +      N             S    + +     +L
Sbjct: 189 LLIPKTDLVVGDLPVGYYPIDDKVSDYITKNND----------GHSYAHYVLIEKSIRQL 238

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
           +      G    ++         +     ++ +++ +   ++ ++ LPT+LF  + ++ +
Sbjct: 239 K----EDGIGIFIVPRGIFEVKDS----VKLLKYIQKVGYLQGLLNLPTELFNDKQSMKS 290

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            L +       ++  +V L +    +       K    I    ++ I
Sbjct: 291 ILIVQKKGNKAKQAEEVLLGDFPS-FKKQEEFKKFINEIVSWAKKNI 336


>gi|298252319|ref|ZP_06976121.1| protein of unknown function DUF450 [Ktedonobacter racemifer DSM
           44963]
 gi|297545739|gb|EFH79608.1| protein of unknown function DUF450 [Ktedonobacter racemifer DSM
           44963]
          Length = 1019

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 37/225 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E           E+Y            + ++        + Y+ S L       
Sbjct: 236 IFLRICEDR-------GIEEYERLKFLLKGTSVYKRLCDLFLEADARYN-SGLFHFQKEK 287

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N +    + + N   + +D      + RL      Y+              +P  V+  +
Sbjct: 288 NWDEAPDTLTQNL--VIDDKPLKDIVKRLYYPESPYEF-----------SALPADVLGKV 334

Query: 159 YEHLIRRFGSEV-------------SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                   +    + TP  +V       L       K     
Sbjct: 335 YEQFLGKVIRLSPSHKVTVEEKLEVRKAGGVYYTPDFIVTYIVHHTLSKLLEGKKPGARG 394

Query: 206 IRT---LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +   + DP+CG+G FL  A  ++ D      +      H +EL
Sbjct: 395 SASKIKIVDPSCGSGSFLIVAYQYLLDWHRDRYVEDGPEKHRKEL 439


>gi|222087283|ref|YP_002545820.1| DNA methylase [Agrobacterium radiobacter K84]
 gi|221724731|gb|ACM27887.1| DNA methylase [Agrobacterium radiobacter K84]
          Length = 546

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 85/282 (30%), Gaps = 36/282 (12%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L P    +     +Y  +I             + TP  + +    +  D    + K    
Sbjct: 69  LSPHD-RNYWRGTLYTLMIS---PADRRAQAAYFTPPYLANAVIDMASDHGFDIRKHD-- 122

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               + DP  G   FL+   + +   G   K       +G E++     +      +   
Sbjct: 123 ----VLDPAAGGAAFLSLIADRMHRAGVPKKDIAN-RLNGIEIDE---RLARMSEFL-IA 173

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E        + ++ G ++     T + +   ++NPP+G+           E      G+ 
Sbjct: 174 EQLEGFRSRQIVRVGDSIQ--AKTDESYDLVIANPPYGRMRP-------DELAEKIWGKV 224

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                         L     K       GG  A+V+ SS     R G     +R ++   
Sbjct: 225 AYRNHINKYAVFAELCLRVVK------TGGLVALVIPSSF----RGGPLYDRMRSYVASQ 274

Query: 385 DLIEAI--VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
             I A+  V    D+F        + ++        + +V+ 
Sbjct: 275 GQILALGTVTNREDVFADVAQDVSVLLVRRGAPHLTKQRVKF 316


>gi|208435250|ref|YP_002266916.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208433179|gb|ACI28050.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 1122

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 34/248 (13%)

Query: 42  RRLECALEPTRSAVR--------EKYLAFGGSNIDL-ESFVKVAGYS-FYNTSEYSLSTL 91
           + L+ AL   +  ++        ++YL    S  D  ++F +   YS F     +    +
Sbjct: 177 KYLKDALITYQKDMQVSSIFKNFKEYLYEELSCEDFSDAFAQTLTYSLFIAKLNHPFEKI 236

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDT 149
              N R+++    A   + A    +  D    I  L    L      +   I  +L+ D 
Sbjct: 237 DLNNVRSSIPKNFAVIREMA-DFLKRLDAIKDIQWLLNEILSLINHVDMDSILKDLNDDK 295

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            P       YE  +  +  ++ E    + T   VV      L       FK++P  +++ 
Sbjct: 296 DPYLHF---YETFLSAYDPKLREKKGVYYTQDSVVKFIINALDSLLKTHFKDAPLGLKSA 352

Query: 210 --------YDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPIL-VPHGQELEPET 251
                    D   GTG FL +A     +              K   +L   +G E     
Sbjct: 353 LDNENIKPLDFATGTGTFLLEAFRKALEVRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 412

Query: 252 HAVCVAGM 259
           +A+    +
Sbjct: 413 YAIAHLNL 420


>gi|74316943|ref|YP_314683.1| adenine specific DNA methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056438|gb|AAZ96878.1| adenine specific DNA methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 1049

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 91/565 (16%), Positives = 167/565 (29%), Gaps = 116/565 (20%)

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +  LE+F +         S   L +L       +L+  I    D+   +F+  +      
Sbjct: 226 DKTLETFSRQEALELLPKSNPFLRSLFGYIAGPDLDERIKWIIDDLANVFQAANVK---- 281

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                    K+ + F  +     T  +    + YE  +  +  E  +    + TP  VV+
Sbjct: 282 ---------KLMEGFGKL-----TGRNDPFLHFYETFLSAYNPEKRKARGVWYTPEPVVN 327

Query: 186 LATALLL-----------------------DPDDALFKESPGMIRT------LYDPTCGT 216
                +                        D   A  K  P M R       + DP  GT
Sbjct: 328 FIVRAVDNVLQTEFGLADGLADTSKVTIDWDTGQADRKGKPVMTRKEVHRVQILDPATGT 387

Query: 217 GGFLTDAMNHVA---------DCGSHHKIPPILVPHGQELEPETHAVCVA--GMLIRRLE 265
           G FL + +  VA             + +   I   HG EL   ++A+C     M++  L 
Sbjct: 388 GTFLAEVIKQVAPKVKGVAEGMWSQYIERDLIPRLHGFELLMASYAMCHMKLDMILTELG 447

Query: 266 SDPRRDLSK-------NIQQGSTLSKDLFTGK----------------RFHYCLSNPPFG 302
             P     +       ++++G    +DLF  +                     + NPP+ 
Sbjct: 448 YKPTGAPPRLGVYLTNSLEEGERDVRDLFMAQWLTREAREASTIKRQAPIMCVIGNPPYS 507

Query: 303 ------KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
                  +W  D     K+   G   R     PK  +   +  +  A  L +  NG G  
Sbjct: 508 GESANKGEWIMDLMDAYKKEPGGRD-RLNERNPKWINDDYVKFIRFAEHL-ILKNGEGVL 565

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             + +   L           +R  LL+      ++ L  +              + +K  
Sbjct: 566 GFITNHGYL----DNPTFRGMRWHLLDTFDKIYVLDLHGN--------------AKKKEV 607

Query: 417 ERRGK----VQLIN---ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
              GK    V  I    A  +    R   K  + + +    ++     S+    +++ L 
Sbjct: 608 TPEGKADKNVFDIQQGVAIIIGIKKRANVKGNKPLAEVHHAELWGDRASKYEALWAKGLT 667

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              +   +++   P       D       +     R+  PLH +  +     +       
Sbjct: 668 GELWQ--KLEHRAPQYPLTRRDYGLQEAYDDGFGLREFMPLHGNGVVTKRDRLNIHETES 725

Query: 530 GWAESFVKESIKSNEAKTLKVKASK 554
           G  E       ++ E    K K  K
Sbjct: 726 GVREVIDDFLTRTEEVVRAKYKLPK 750


>gi|329569081|gb|EGG50874.1| helicase protein [Enterococcus faecalis TX1467]
          Length = 2266

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPPEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                      +   +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHD---------------------YFIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A       R+ L     +   V LP   F     T + T +      
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKH 910


>gi|254167200|ref|ZP_04874053.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
 gi|197624056|gb|EDY36618.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
          Length = 995

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 125/469 (26%), Gaps = 130/469 (27%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         + E       +   L    + A    YN+  +         T  
Sbjct: 236 IFLRMCEDRGVERYGRLLEAAEEDVYAA--LLKLYQEADKK-YNSGLFHFKPEKGRATEP 292

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +        + N K   +       I  L      Y+              +   ++  +
Sbjct: 293 D------DITPNIK--IDSKVLKRIIKGLYYPESPYEF-----------SVISPEILGQV 333

Query: 159 YEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                EV +    + TP+ +V       +             
Sbjct: 334 YEQFLGKVIRLTKGHRAKVEEKPEVKKAGGVYYTPQYIVDYIVENTVGKLCKGKTPKEME 393

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG-----------------------------SHHKI 236
              + DP CG+G FL  A   + +                                  K 
Sbjct: 394 KIKILDPACGSGSFLLGAYTRLLEEHLRYYTSAKNKKRYRDRIYQDKNGEWRLTIREKKR 453

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPR---------------RDLSKNIQQGST 281
             +   +G +++ +   V    +L++ LE + +                DL  NI+ G++
Sbjct: 454 ILLNSIYGVDIDEQAVEVTKLSLLLKVLEGENKDALERQQKLWRERALPDLGNNIKCGNS 513

Query: 282 ------------------------------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                                            ++     F   + NPP+          
Sbjct: 514 LVGTDYYASGVQMTLFDEEGERINAFDWEKEFPEVMKNGGFDVIIGNPPY---------- 563

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           V +E        F          + L++  +   ++L    G    IV +       RA 
Sbjct: 564 VRQEMLGKLKNYFKEHYEVYHGTADLYVYFIERSMKLLKPNGIYGIIVANK----WMRAN 619

Query: 372 SGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKTEE 417
            G   +R WL +  ++E I+    LP  +F +      + I+   K  +
Sbjct: 620 YG-KPLREWLKKWQIVE-ILDFGDLP--VFKKATTYPCIMIVKASKPRK 664


>gi|295399528|ref|ZP_06809510.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109916|ref|YP_003988232.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294978994|gb|EFG54590.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215017|gb|ADP73621.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 329

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 49/303 (16%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD------ 182
              +L       +   L       ++     E + + F   V +G +++  P        
Sbjct: 40  HGDVLQNEVSEINAQRLKKQYNDIQLERFTNEEIRKAFQLAVLKGMKEYTQPHHQMTPDA 99

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V    + L+             +  T+ DP  GT   LT  +NH+    +          
Sbjct: 100 VSLFISYLVNQF------TRKHLALTILDPAVGTANLLTTVLNHLKGKQTKS-------- 145

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G +++     +         L+    +  +++  Q           +     + + P G
Sbjct: 146 YGVDVDDVLIKLAYVN---ANLQKHAIQLFNQDGLQP-------LFVELADVVICDLPVG 195

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
               K+              RF   + K  +G          +       GG    ++ +
Sbjct: 196 YYPHKEN-----------ASRF---VLKAEEGHSYAHHLFIEQSLYYTKEGGYLFFLIPN 241

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGK 421
           +   + +A      I+    E+ +I+ ++ LP  +F     A  ++IL  + K  +   K
Sbjct: 242 TLFSSDQAAKLHDFIK----EHAVIQGLLQLPLSMFKTERAAKSIFILQKKGKNVKAPKK 297

Query: 422 VQL 424
             L
Sbjct: 298 ALL 300


>gi|307277424|ref|ZP_07558517.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|306505913|gb|EFM75090.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
          Length = 2266

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPPEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                      +   +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHD---------------------YFIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A       R+ L     +   V LP   F     T + T +      
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKH 910


>gi|161617579|ref|YP_001591544.1| hypothetical protein SPAB_05438 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366943|gb|ABX70711.1| hypothetical protein SPAB_05438 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 227

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 33/207 (15%)

Query: 95  NTRNNLESYIASFSDNAKAI-----FEDF------DFSSTIARLEKAGLLYKIC------ 137
           N  N+ +++I+ F+  A+       FEDF         + ++  EK    Y         
Sbjct: 3   NLINHEKAFISLFNQTARYHHRHQVFEDFISCSVIALQNALSFCEKREQKYLRIVARYEK 62

Query: 138 -------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
                  +  + +    D  P   +  ++  L         +    F TP DV  +   +
Sbjct: 63  KDVVRMAELLAHVVNGLDDSPGDFLGQVFMQL-----ELGDKYRGQFFTPWDVGIMMARM 117

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            L      F + P +  TL +P CG G         + D G  +     L     +++P 
Sbjct: 118 QLGNVADNFADKPFI--TLAEPACGAGCMALAFATVLRDAG--YSPHRYLWVSATDIDPL 173

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQ 277
              +    + +  +  +     S   +
Sbjct: 174 AAGMAYIQLTLCGVPGEVVIGNSLCDE 200


>gi|168179585|ref|ZP_02614249.1| modification methylase family protein [Clostridium botulinum NCTC
           2916]
 gi|182669821|gb|EDT81797.1| modification methylase family protein [Clostridium botulinum NCTC
           2916]
          Length = 577

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 109/355 (30%), Gaps = 58/355 (16%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y   I+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYEFIK-----GIKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQELE 248
           +          + DP+CG G  L     ++ +            ++            L+
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWE 306
              +   +  + I+ L  D         +        L       F   + NPP+     
Sbjct: 137 NNLYGFDIDTIAIKILIIDLFYLTGYYNKNNFKKKDFLIEDINNNFDIYIGNPPYVGH-- 194

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +V+KE+      ++G       D S  F ++  N      N   +   + S   + 
Sbjct: 195 ---KSVDKEYSMLLKRKYGYVYKDKGDISYCFFINALNY----SNINSKITFITSRYFME 247

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTEE--- 417
           +    +    +R++L EN  I  I+      F+         I   +  +    + +   
Sbjct: 248 SKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRNISNKVEI 298

Query: 418 ----RRGKV---QLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSREN 461
               R  KV      N  D +        + +    ++ DD  R I++   ++ N
Sbjct: 299 IKPCRYEKVKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDVSRDIINKIENKTN 353


>gi|167855421|ref|ZP_02478187.1| hypothetical protein HPS_04467 [Haemophilus parasuis 29755]
 gi|167853487|gb|EDS24735.1| hypothetical protein HPS_04467 [Haemophilus parasuis 29755]
          Length = 214

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 12/178 (6%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173
           F+D D      +                I L+  +  P  V+   Y  L        ++ 
Sbjct: 36  FQDRDERYFSIKSRYTDDEMYQFHQLGQILLNLLEEEPQDVLGQCYMKL-----QIANKQ 90

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                TP     +   +L+ P +   K       TL +PTCG+G  +      +   G  
Sbjct: 91  RGQCFTPLSTGQVMANMLIAPSEIDEKGY----FTLNEPTCGSGALIISFCETLKSQG-- 144

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +     L+   Q+++ ++  +C   + +  + +  +           T    L+  +R
Sbjct: 145 YNPQQQLLVIAQDIDLKSVQMCYVQLSLLGISAIIQHANPIANNVIDTYYTPLYLLQR 202


>gi|294646402|ref|ZP_06724047.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292638270|gb|EFF56643.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 1354

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 82/258 (31%), Gaps = 57/258 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  VV      L  P                DP+ GTG      +  V +       
Sbjct: 26  FYTPEPVVTAMQESLQVPGIRPG--------RFLDPSAGTG-MFISGLKGVPE------- 69

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 H  E +  T  +  A     R+  D  + +                   F    
Sbjct: 70  -----VHCFEKDKLTGKILSALYPESRVAIDGFQSIQPYYNNY------------FDMVS 112

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGG 354
           SN PFG     D+D            R    + K S    L  +H    L+     + GG
Sbjct: 113 SNIPFGNTRVYDRD----------FDRSEDVVRKSS----LAAVHNYFFLKGMDTLHEGG 158

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
             A + +S  + + +       +R WL+ +  + + + LP +LF    T +++ L +L  
Sbjct: 159 ILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTEVSSDLIVLQK 214

Query: 413 --RKTEERRGKVQLINAT 428
             RK+E    +   I   
Sbjct: 215 NTRKSELTEKERNFIETR 232


>gi|134296218|ref|YP_001119953.1| hypothetical protein Bcep1808_2116 [Burkholderia vietnamiensis G4]
 gi|134139375|gb|ABO55118.1| hypothetical protein Bcep1808_2116 [Burkholderia vietnamiensis G4]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 31/220 (14%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             +   +      TP  +      +L          +P +   + +P+CG G F+   ++
Sbjct: 14  LSAGDRKRRGVVYTPVALAQSMCEML----------APSLAERVLEPSCGRGVFVFALLH 63

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGML----IRRLESDPRRDLSKNIQQGST 281
              +               +    +   + +A +     I       R D S N++ G  
Sbjct: 64  WQRERHGLTWEQAARWAERRLFAGDLDPLALADLAELWAIHFRRHGVRSDFSANLRAGDA 123

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L +  +  +RF   L NPP+ +   ++  A  +E           G           +  
Sbjct: 124 LFE-GYGDERFDAVLGNPPYVR--IQNLPASTREAIRDRFSSCAKGN----------VDL 170

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                E   +   R + V+ +S L N  A      +R  +
Sbjct: 171 YYAFCEKALDVARRVSFVVPNSLLSNASA----KALREKM 206


>gi|299141731|ref|ZP_07034867.1| helicase [Prevotella oris C735]
 gi|298577067|gb|EFI48937.1| helicase [Prevotella oris C735]
          Length = 689

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +        +    E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEGKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|262197875|ref|YP_003269084.1| hypothetical protein Hoch_4701 [Haliangium ochraceum DSM 14365]
 gi|262081222|gb|ACY17191.1| hypothetical protein Hoch_4701 [Haliangium ochraceum DSM 14365]
          Length = 795

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 41/178 (23%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEG-------------AEDFMTPRDVVHLATALLLDPDD 196
           +P   +  +YEH + R  S    G             +  + TP DVV       + P  
Sbjct: 127 MPPEDLGRLYEHALDRKLSLSGNGRLALETSPATHRSSGMYYTPPDVVDALIHSSVAPLF 186

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP------------------ 238
           A           + DP CG+G FL     ++     +  +                    
Sbjct: 187 AGQPLKQAAKVKILDPACGSGSFLVGVYRYLLGWYRNAYLRAGGDALKAHLTRSGVGTWT 246

Query: 239 ----------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                         HG +L+P   A+    + +  LE D         +  +  + D 
Sbjct: 247 LVAPERIRILTQHLHGVDLDPHAVALARRALYLEALEGDSVEAQEGRFENPTWPALDH 304


>gi|116255163|ref|YP_770997.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259811|emb|CAK02905.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1696

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 71/252 (28%), Gaps = 50/252 (19%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L++    A  +        + +P  GTG F         D              G EL+
Sbjct: 170 ELIVRAIWAGIQRLGWRGGRVLEPGIGTGLFPALIPPEYRDTA---------YVTGIELD 220

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +                     I +G     DL     +   + NPPF  +    
Sbjct: 221 PVTARIVRL------------LQPRSRIIEGDFARTDLAP--IYDLAIGNPPFSDR---- 262

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              V  +     LG             +    +   +       G  AA V S   L   
Sbjct: 263 --TVRSDRAYRSLG-------------LRLHDYFIARSIDLLKPGALAAFVTSHGTLDKA 307

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425
              +     R  + +   + A + LP   F     T++   +     RK  E  G    +
Sbjct: 308 ATTA-----REHIAKTADLIAAIRLPEGSFRRDAGTDVVVDILFFRKRKAGEPEGDQIWL 362

Query: 426 NATDLWTSIRNE 437
           +  ++  ++ +E
Sbjct: 363 DVDEVRPAVDDE 374


>gi|6165642|gb|AAF04626.1| DNA methyltransferase [Geobacillus stearothermophilus]
          Length = 579

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 34/254 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +  +    +LD     FK     +  + DP CG G  L  A+N VA   
Sbjct: 14  KATGAHFTPDKLAEVIAKRILDY----FKGEKNRVIRVLDPACGDGELLL-AINKVAQS- 67

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----GSTLSKDL 286
               +   L   G + + +  A+ +A   + R      R ++K+  +      +    ++
Sbjct: 68  ----MNIQLELIGVDFDID--AINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNI 121

Query: 287 FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              +     ++NPP+   +    + A +   K    GR                      
Sbjct: 122 EELEPVDIIIANPPYVRTQILGAEKAQKLREKFNLKGRVD------------LYQAFLVA 169

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +       G   ++ S+  L      S     R++L+ N  I  I+ L    FF   +  
Sbjct: 170 MTQQLKSNGIIGVITSNRYLTTKGGEST----RKFLVSNFNILEIMDLGDTKFFEAAVLP 225

Query: 406 YLWILSNRKTEERR 419
            ++    +  E ++
Sbjct: 226 AIFFGEKKNKEYQK 239


>gi|86359839|ref|YP_471730.1| DNA methylase [Rhizobium etli CFN 42]
 gi|86283941|gb|ABC93003.1| probable DNA methylase [Rhizobium etli CFN 42]
          Length = 1699

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 60/226 (26%), Gaps = 50/226 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F                   +    G EL+P T  +         
Sbjct: 186 WRGGRVLEPGIGTGLFPALMPKQYR---------QLSYVTGIELDPVTARIVK------- 229

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                +      I  G     DL     +   + NPPF  +  +                
Sbjct: 230 -----QLQPKARIINGDFARTDL--NAIYDLAIGNPPFSDRTVR---------------- 266

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   SD     L    +   +  +        L+S     G     +   R  + +
Sbjct: 267 --------SDRQYRSLGLRLHDYFIARSIDLLKPGALASFVTSAGTMDKVDGTAREHIAQ 318

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           +  + A + LP   F     T++   +     RK  E  G V  ++
Sbjct: 319 SADLIAAIRLPEGSFRRDAGTDVVVDVLFFRKRKAGEPEGDVSWLD 364


>gi|16082323|ref|NP_394792.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640679|emb|CAC12457.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Thermoplasma acidophilum]
          Length = 496

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 62/234 (26%), Gaps = 43/234 (18%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIF--------EDFDFSSTIARLEKAGLLYKIC 137
           +  +        N L+S +  + +  K           +DFD                  
Sbjct: 234 FIRNAEDRGLEENQLQSILRQWYEKGKGHLMKEISRIYKDFDDKYNSKLFAHHLCDDLYI 293

Query: 138 KN------FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA------------EDFMT 179
            N        G+    D       S I   ++        + A              + T
Sbjct: 294 DNEALQEVIEGLNHSKDDSYRYDFSVIESDVLGNILKSTPKRAKLEESKTHRKEQGIYYT 353

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V       +                + DP CG+G FL  A   + +    +     
Sbjct: 354 PSYIVDYIVKNTVGEYIKTHTPEEIKKVRILDPACGSGSFLIRAYKELENYWKQNSDFAQ 413

Query: 240 LV-----------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           L                   +G +L+P+   +    +L++ LE   R  L +N 
Sbjct: 414 LTLDSEEFYSKKVEILRNNIYGVDLDPKAVEIAQLNLLLQILEKKQRLPLLQNN 467


>gi|300856561|ref|YP_003781545.1| putative DNA modification methyltransferase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436676|gb|ADK16443.1| predicted DNA modification methyltransferase [Clostridium
           ljungdahlii DSM 13528]
          Length = 587

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 100/327 (30%), Gaps = 60/327 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +       TP ++       L++ +D +          + DP+CG+G  +     ++   
Sbjct: 54  NGKNGVVYTPPEMAAFMVKNLINVNDVIG----NPFIKIIDPSCGSGNLICKCFLYLNRI 109

Query: 231 G-SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-------DLSKNIQQGSTL 282
              + ++         +LE  ++ +    +    ++    +        +S    + +  
Sbjct: 110 FIKNIEVINSKNNLNLKLEDISYHIVRNNLFGFDIDETAIKVLKIDLFLISNQFSEKNFQ 169

Query: 283 SKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            KD       +++   + NPP+         +V+  +       +G       D S  F 
Sbjct: 170 VKDFLVENIDRKYDVFIGNPPYIGH-----KSVDSSYSYVLRKIYGSIYRDKGDISYCFF 224

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 L+     GG+   V  +S  F       E  +R++L+EN  I  I+      F+
Sbjct: 225 QKSLKCLK----EGGKLVFV--TSRYFCESCSGKE--LRKFLIENTSIYKIID-----FY 271

Query: 400 R------TNIATYLWILSNRKTEERRGKV-----------------QLINATDLWTSIRN 436
                    I   +  L   K      ++                   ++ ++       
Sbjct: 272 GIRPFKRVGIDPMIIFLVRTKNWNNNIEIIRPNKIEKNEKNKFLDSLFLDKSEKCKKFSI 331

Query: 437 EGKKRR----IINDDQRRQILDIYVSR 459
             K       +  D+  + I+D    +
Sbjct: 332 SQKSINNDGWVFVDEVEKNIIDKIKEK 358


>gi|223934434|ref|ZP_03626355.1| putative type II DNA modification enzyme [bacterium Ellin514]
 gi|223896897|gb|EEF63337.1| putative type II DNA modification enzyme [bacterium Ellin514]
          Length = 1551

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 47/176 (26%)

Query: 153 RVMSNIYEHLI-------------------RRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
               ++YE L+                   ++      + +  + TP  +V       LD
Sbjct: 415 EEFGSVYERLLELHPVIHPATNTLPSHFAFKQAAGNERKTSGSYYTPSSLVECLLDSALD 474

Query: 194 PDDA-----------LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---------- 232
           P                 +   +   + DP CG+G FL  A   +A   +          
Sbjct: 475 PVLEDRLKNFARLGFKSADQAVIALKVCDPACGSGHFLIAAAQRIARRLALLRSNGDEPS 534

Query: 233 ----HHKIPPILV--PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                H +  ++    +G ++ P +  +C  G+ +  +E   P   L  +++ G++
Sbjct: 535 VSELRHTLREVISHCIYGVDINPMSVELCKVGLWLEAMEAGKPLSFLDHHVRCGNS 590


>gi|327313863|ref|YP_004329300.1| hypothetical protein HMPREF9137_1622 [Prevotella denticola F0289]
 gi|326944313|gb|AEA20198.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 1491

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +        +    E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEDKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                 G                  GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTRTIHNYFFVKGLDAI------------KEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVDSDLIVLQKQSGKE 305


>gi|294785906|ref|ZP_06751194.1| helicase [Fusobacterium sp. 3_1_27]
 gi|294487620|gb|EFG34982.1| helicase [Fusobacterium sp. 3_1_27]
          Length = 2042

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 74/241 (30%), Gaps = 57/241 (23%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D       E       + +P+C  G F+          G+  K       +G EL+
Sbjct: 540 KVVIDNIYTKLIEFGFKEGRILEPSCAVGNFI----------GNLPKELDSSQVYGVELD 589

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +               +   ++  Q     +  F+   F   + N PF       
Sbjct: 590 SISGNIAK-------------QLYPQSEIQVKGFEETNFSNNFFDIAIGNVPF------- 629

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                        G F     +    + L   +   K       GG  A + SS  L   
Sbjct: 630 -------------GNFKILDREYDRYNFLIHDYFFAKTIDKVKSGGIIAFITSSGTL--- 673

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425
                ++ +R++L E   +   V LP  +F     T + + +  L        R K+Q +
Sbjct: 674 --DKKDNSVRKYLGERCELLGAVRLPNSVFKGVAGTEVTSDILFLKK------RDKIQEL 725

Query: 426 N 426
           +
Sbjct: 726 D 726


>gi|208434933|ref|YP_002266599.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208432862|gb|ACI27733.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 2808

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 139/454 (30%), Gaps = 80/454 (17%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            + TP+ V+      L    D L   +    + +++P+ GTG F+           +H   
Sbjct: 975  YYTPKLVIDSIYRAL----DQLGFNNDNHQKEIFEPSLGTGKFI-----------AHAPS 1019

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   G EL+P + ++               + L  N    +T  ++    + +   +
Sbjct: 1020 DKNYRFMGTELDPTSASI--------------SQFLYPNQVIQNTALENHPFHQDYDAFV 1065

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             NPP+G       +  E  +++      G  + ++ D                    G  
Sbjct: 1066 GNPPYGNHKIYSSNDAELSNESVHNYFLGKAIKELKD-------------------NGIG 1106

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            A V+SS  +      +   ++R  + +N      + LP  +F  T       I+  +K  
Sbjct: 1107 AFVVSSWFM-----DAKNPKMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGV 1161

Query: 417  ERRGKVQLINATDLWTSIRNEGKKRRIIN----------DDQRRQILDIYVS---RENGK 463
            ++        A   +  I N      +               + +I++   S    +  K
Sbjct: 1162 DKATNQSFTKAMPYYDKILNSLDDDTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQEK 1221

Query: 464  FSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDIL 519
              R    +D   FGY+         +   +DK G   +   + T  +    H    L  L
Sbjct: 1222 LQRWYEEIDTANFGYKEQDYEI---IKDFMDKVGENNINLNEQTLNEYFIHHPENILGRL 1278

Query: 520  KPMMQQIYPYGWAESFVKESIKSNEAKTLKV-----KASKSFIVAFINAFGRKDPRADPV 574
                 +       E   K  +++ E K+L +     +A +                   +
Sbjct: 1279 SLEKTRYSFETNGEQIYKYELQALEDKSLDLSQALNQAIEKLPKDVYQYHKTTLKTDALI 1338

Query: 575  TDVNGE--WIPDTNLTEYENVPYLESIQDYFVRE 606
             D N E        +   E    ++    YF  E
Sbjct: 1339 IDANNERYQEVQKLIKNLERGELVKWDDLYFQLE 1372


>gi|193297458|gb|ACF17793.1| putative helicase/DNA methylase [Helicobacter pylori]
          Length = 2609

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 123/415 (29%), Gaps = 80/415 (19%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 721  EFRRAYSSTRDAYYTP----KLVIDSIYQGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 772

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 773  -------AHAPSDKNYRFVGTELDP--------------ISANISKFLYPNQVIQNTALE 811

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G    K   + +KE  N  +  +  G                 
Sbjct: 812  NHQFYQEYDAFVGNPPYGS--HKIYSSNDKELSNESVHNYFLGK-------------AIK 856

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +          ++R  + +N      + LP  +F  T   
Sbjct: 857  ELK----DDGIGAFVVSSWFM-----DGKNPKMREHIAQNATFLGAIRLPNSVFKATGAE 907

Query: 405  TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                +                K      K+  I++ D  T    +  +        + +I
Sbjct: 908  VSSDIVFFKKGVDGATNQSFTKAMPYYDKI--IDSLDDDTLFALQNNRFDSFTPSDQLKI 965

Query: 453  LDIYVS---RENGKFSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLE 499
            ++   S    +  K  R    +D   FGYR          + +    +  L++  L    
Sbjct: 966  VNAIASHFGFKQEKLQRWYEKIDTANFGYREQDYKIIKGFIDKVGENNINLNEQTLNEYF 1025

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                   L  L         +   +QIY Y       K    S        K  K
Sbjct: 1026 IHHPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLDLSQALHQAIEKLPK 1080


>gi|167554092|ref|ZP_02347833.1| RemS [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321627|gb|EDZ09466.1| RemS [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 277

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  I+  L              + TP  V  L   +L+       +     I T+ DP
Sbjct: 123 DFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARMLMPGVQDTVRRE--GIATVSDP 175

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPRR 270
            CG  G L      + +      I P +   G   +++P    +    + +  + ++   
Sbjct: 176 ACGAAGMLIAYAECLLEAD----INPSMHMFGSCIDIDPVAADMAFIQLSLLGIAAEVVT 231

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             +  +Q        ++    F   L++
Sbjct: 232 GNTLTMQFNRVRYTPVYYLNDFEKRLAD 259


>gi|295112607|emb|CBL31244.1| Helicase conserved C-terminal domain./SNF2 family N-terminal
           domain. [Enterococcus sp. 7L76]
          Length = 2266

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAIPPEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                      +   +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHD---------------------YFIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A       R+ L     +   V LP   F     T + T +      
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKH 910


>gi|189499843|ref|YP_001959313.1| hypothetical protein Cphamn1_0884 [Chlorobium phaeobacteroides BS1]
 gi|189495284|gb|ACE03832.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 1290

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 102/358 (28%), Gaps = 55/358 (15%)

Query: 24  GDFKHTDFGKVILPFT----LLRRLECA--------LEPTRSAVREKYLAFGGSNIDLES 71
           G  K  ++   +L        L  +E          + P R      Y       +  + 
Sbjct: 271 GQIKPAEYYHYLLRLIYRILFLMVIEERNLVYPQSPVAPKRDIYDTYYSLMRLRRLSEKR 330

Query: 72  FVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDF-SSTIAR 126
           ++    +  +  +  +   L    G              F  +A          + T+  
Sbjct: 331 YLADRRHHDHWLALMATFHLFEDGGPGGNLGIAPLAGDLFRADAIGPLNHCSLDNETLLH 390

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--------------FGSEVSE 172
             ++  LY+  K+   I ++   +      ++YE L+                F      
Sbjct: 391 CLRSLSLYENQKSGQLIRVNYAALNVEEFGSVYEGLLEYEPVFLYNDNAIEFAFARGDQR 450

Query: 173 GA-EDFMTPRDVVHLATA-----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            A     TP D+V          L+ D       E   +   + D +CG+G  L  A   
Sbjct: 451 AATGSHYTPDDLVQPLIKHSLDYLIADKLKTSNPEEALLSLRVADISCGSGHILLAAARR 510

Query: 227 VA------DCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLI-RRLESDPR 269
           +A        G     P               +G +L P    +C   + +   +   P 
Sbjct: 511 IATELAIVRTGEEQPSPSAFRSAIRDVIRNCIYGVDLNPLAVELCKVALWLEAHIPGQPL 570

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             L  +I+ G+ +       +     + +  F      DK+ V +  K  +  R   G
Sbjct: 571 NFLDHHIKCGNAIVGFAHREE-MQKGVPDQAFVTMPGDDKEVVAELRKRNKAERIRQG 627


>gi|110803859|ref|YP_699839.1| hypothetical protein CPR_2592 [Clostridium perfringens SM101]
 gi|110684360|gb|ABG87730.1| N-6 DNA methylase [Clostridium perfringens SM101]
          Length = 494

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 50/250 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G  +TL+DP CG                
Sbjct: 23  REIGYYSTPPFVARYIGKRIID--------INGKGKTLFDPCCG---------------- 58

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +  +L  +T      GM + + +++ + +  K+       S+       
Sbjct: 59  -----KEELTDYFSDLGIKTI-----GMDLIKYKNNYKCEFKKDNFINYYCSQKNTKTWD 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+          V    +N E  +       + +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCH------EVNFIKENKERLKNYFNEVGLHNMYSMFMFAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S             +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGALIGLITNDSFF----TAKNHKRLRNKILRECSIYEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERR 419
           L   K  + +
Sbjct: 215 LRKGKEYQEK 224


>gi|325288126|ref|YP_004263916.1| type I restrictioN-modification system, M subunit [Cellulophaga
          lytica DSM 7489]
 gi|324323580|gb|ADY31045.1| type I restrictioN-modification system, M subunit [Cellulophaga
          lytica DSM 7489]
          Length = 37

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI 35
          MT      A L + IWK A ++ G     DF  +I
Sbjct: 1  MT-SNNQRAELQSQIWKIANEVRGSVDGWDFKHLI 34


>gi|312278240|gb|ADQ62897.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus ND03]
          Length = 147

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 32/141 (22%), Gaps = 15/141 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID----LE 70
           +W       G    T +   I      + L          V            D    L+
Sbjct: 1   MWALLNKTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALD 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAKAIFEDFD 119
              +  GY+      +          R N+     +F            D+ + IF+   
Sbjct: 61  YMKQKLGYAIQPKEFFKDWEATIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDGMR 120

Query: 120 FSSTIARLEKAGLLYKICKNF 140
           F ++            +    
Sbjct: 121 FDNSDLGSNAQARASVMISMI 141


>gi|291551202|emb|CBL27464.1| DNA methylase [Ruminococcus torques L2-14]
          Length = 2439

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 68/253 (26%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S        F TP +V+      +        ++       L +P+CG G F+   
Sbjct: 926  EEYASARESTLTAFYTPPEVITTIYKAM--------EQMGFKEGNLLEPSCGIGNFI--- 974

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G           +G EL+  +  +              ++   K         
Sbjct: 975  -------GMLPDSMQDSKIYGVELDTISAGIA-------------QQLYQKTTIAAQGFE 1014

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG                     F     +      L   +  
Sbjct: 1015 ETNLPDSFFDGVVGNVPFGD--------------------FKVSDKRYDKHKFLIHDYFF 1054

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A V S   +           +R+++ +   +   + LP + F     
Sbjct: 1055 AKSLDKLRPGGVMAFVTSKGTM-----DKETLAVRKYIAQRAELLGAIRLPNNTFKGNAG 1109

Query: 401  TNIATYLWILSNR 413
            T + + + IL  R
Sbjct: 1110 TEVVSDILILQKR 1122


>gi|255973573|ref|ZP_05424159.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285046|ref|ZP_07565196.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|255966445|gb|EET97067.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502947|gb|EFM72207.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
          Length = 1737

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 63/227 (27%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 203 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPPEMREQSE---------LYGVEIDS 253

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 254 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 300

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                      +   +     + GG  A++ SS  +    
Sbjct: 301 KTLKKYYIHD---------------------YFIKRSIDLVHEGGIVAVITSSGTMDKKD 339

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A       R+ L     +   V LP   F     T + T +      
Sbjct: 340 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKH 381


>gi|158421587|ref|YP_001527814.1| DEAD-like helicase [Deinococcus geothermalis DSM 11300]
 gi|158342830|gb|ABW35116.1| DEAD-like helicase [Deinococcus geothermalis DSM 11300]
          Length = 1328

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 91/264 (34%), Gaps = 62/264 (23%)

Query: 162 LIRRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           L+ R+      GA   ++ TP ++      ++        K   G    L +P+ G G  
Sbjct: 305 LLARYSGNGGIGASLNEYYTPPELGEAMWQVM-------RKLGSGTGAGL-EPSSGPGVL 356

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                   A          ++     EL P +  +  A +   R +       + + +  
Sbjct: 357 --------AQFAGEDARMDLV-----ELSPISAGIANA-LFGHRHDVHSMSFEAFHQR-- 400

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG--ELGRFGPGLPKISDGSML 337
                     +R+ +   NPPFG +   D++A   +      E  R+             
Sbjct: 401 -------HPEQRYDFLTGNPPFGPR---DENAYLDDGYQDVQECSRY------------- 437

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F +   + L+     GG A +VL +           ++E R  +L    + AI  LPTD 
Sbjct: 438 FTLRALDHLK----EGGVATLVLPAGL----ARNQNDAEWRARVLARAEVVAIHGLPTDT 489

Query: 398 F--FRTNIATY-LWILSNRKTEER 418
           F    T+ AT  +W+L  R    R
Sbjct: 490 FSRAGTDTATTDVWVLRARPEAIR 513


>gi|258648305|ref|ZP_05735774.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260851592|gb|EEX71461.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2065

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +        +    E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGVF------------TETFAKNAGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEEKDKYDLITSNIPFGDFMVYDRT 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|55822820|ref|YP_141261.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738805|gb|AAV62446.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 147

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 32/141 (22%), Gaps = 15/141 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID----LE 70
           +W       G    T +   I      + L          V            D    L+
Sbjct: 1   MWTLLNKTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALD 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-----------DNAKAIFEDFD 119
              +  GY+      +          R N+     +F            D+ + IF+   
Sbjct: 61  YMKQKLGYAIQPKEFFKDWEATIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDGMR 120

Query: 120 FSSTIARLEKAGLLYKICKNF 140
           F S+            +    
Sbjct: 121 FDSSDLGSNAQARARVMISMI 141


>gi|88192890|pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I
           S-Adenosylmethionine-Dependent Methyltransferase
           (Lmo1582) From Listeria Monocytogenes At 2.20 A
           Resolution
          Length = 344

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 34/230 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  +
Sbjct: 127 QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLALVGADL 181

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +R +                              +S+ P G          ++  K  EL
Sbjct: 182 QRQKXTLLHQDGLANLLVD----------PVDVVISDLPVGYY------PDDENAKTFEL 225

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R        S    LF+       +     GG    ++  +          +  I++  
Sbjct: 226 CR----EEGHSFAHFLFIEQGXRYTKP----GGYLFFLVPDAXFGTSDFAKVDKFIKK-- 275

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDL 430
             N  IE I+ LP  LF        + IL     + +  K V L N + L
Sbjct: 276 --NGHIEGIIKLPETLFKSEQARKSILILEKADVDVKPPKEVLLANLSSL 323


>gi|13488153|ref|NP_085860.1| DNA methylase [Mesorhizobium loti MAFF303099]
 gi|14028109|dbj|BAB54701.1| DNA methylase [Mesorhizobium loti MAFF303099]
          Length = 1011

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 87/277 (31%), Gaps = 58/277 (20%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + + S          TP  ++            A  +        + +P  GTG  L  A
Sbjct: 150 QEYASLARCTQYAHFTPEFIIRAI--------WAGLQRLGWRGGRVLEPGIGTG--LFPA 199

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +      G  H         G E++P T  +                     I  G    
Sbjct: 200 LMPEDRRGVSH-------VTGVEIDPVTARIARL------------VQPRARIVNGDFSC 240

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL     F   + NPPF  +  +     ++ +++  L      + +             
Sbjct: 241 TDLPA--YFDLAIGNPPFSNRTVRS----DRTYRSMGLRLHDYFIARS-----------V 283

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           + L+     G  AA V SS  +    + +     R+ + ++  + A + LP   F     
Sbjct: 284 DLLKP----GALAAFVTSSGTMDKTDSIA-----RKHIAKSADLIAAMRLPEGSFRTDAG 334

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           T++   +     RK  E  G +  ++  ++  + ++E
Sbjct: 335 TDVVVDILFFRKRKVTEPEGDLSWLDIEEVRQATQDE 371


>gi|294624116|ref|ZP_06702857.1| XamI DNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601585|gb|EFF45581.1| XamI DNA methyltransferase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 528

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 80/279 (28%), Gaps = 47/279 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +   + + IR   +     A    TP  +V              +  + G    + DP
Sbjct: 56  DPLGEAF-YSIR--SATERRAAGAVYTPAPIVRSMM---------TWLAAQGSPARIVDP 103

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G F+  A     D                E++P    +  A +  R         +
Sbjct: 104 GAGSGRFILAAGEAFRDA----------QLVAVEMDPLAALMLRANLSARGWTDRATVMV 153

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                        L         + NPP+ +  +     + +  K      F     K S
Sbjct: 154 K------DYRGVKLPRCAGITAFIGNPPYVRHHD-----IGEAWKAWYASNFAGYGIKAS 202

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
             + L L        L   G   A I  +     N  +      +RR LL+       +A
Sbjct: 203 ALAGLHLHFFLQTRLLAKAGDVGAFITSAEWMDVNYGS-----ALRRLLLDE---LGGIA 254

Query: 393 L----PT-DLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           L    PT + F  T     +      +T  R  +V+ I+
Sbjct: 255 LHVLEPTVEAFPGTATTAAIACFRVGETA-RPVRVRFID 292


>gi|237740829|ref|ZP_04571310.1| superfamily II DNA and RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229431213|gb|EEO41425.1| superfamily II DNA and RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 790

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 51/231 (22%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D               + +P+ G G F+          G+  +       +  EL+
Sbjct: 65  KVVIDNIYKGLDNLGFKEGKILEPSSGIGNFI----------GNIPEKMENSKFYSVELD 114

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +  A                +   Q        F    F   + N PFG      
Sbjct: 115 SLSGRIEKA-------------LYPQANIQIDGFENIDFRNNFFDVAVGNVPFGD----- 156

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                          F     + +  + L   +   K       GG  A + S+  +   
Sbjct: 157 ---------------FKVNDKEYARNNFLIHDYFFAKSIDKVRPGGVIAFITSNGTM--- 198

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTE 416
                +  IRR++ E   +   V LP + F     T + + +  L  R+ +
Sbjct: 199 --DKKDESIRRYIGERCELLGAVRLPNNTFKGVAGTEVTSDIIFLKKREEK 247


>gi|304382581|ref|ZP_07365075.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336206|gb|EFM02448.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 1497

 Score = 47.1 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            +R   DP+ G G F            +        +    E +  T  +  A   +   
Sbjct: 125 QVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLLTARITQA---LH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +D     Q+      +L    ++    SN PFG     D+   + E+        
Sbjct: 168 --PYGKDNIFVRQEPFEAIGELEEKDKYDLITSNIPFGDFMVYDRSYSKGENILKRESTR 225

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                           +   K       GG  A + S   L    +   E+ IRR+LL+N
Sbjct: 226 ------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DSPKNEA-IRRYLLQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
             + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 270 SRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|282849446|ref|ZP_06258831.1| hypothetical protein HMPREF1035_0399 [Veillonella parvula ATCC
           17745]
 gi|282581150|gb|EFB86548.1| hypothetical protein HMPREF1035_0399 [Veillonella parvula ATCC
           17745]
          Length = 583

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            + F   L  P +  + +K               R        ++   L ++    +L  
Sbjct: 210 NQLFDRILCVPIWNHRLDKTLKLNPIVK-----SRMDAIGKIPANTDWLEVLAAFEQL-- 262

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G    ++++S L N +       IR + ++   I+++V LP  L   T I  Y  
Sbjct: 263 --ADDGVMVALMTNSSLTNFQN----QVIRGYFVDRGYIQSVVELPDSLSEFTRIPLYAV 316

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN 436
           +LS          ++ ++A++ +   R 
Sbjct: 317 VLS-----HNNNDIKFVDASESYIQERR 339


>gi|254520789|ref|ZP_05132845.1| N-6 DNA methylase [Clostridium sp. 7_2_43FAA]
 gi|226914538|gb|EEH99739.1| N-6 DNA methylase [Clostridium sp. 7_2_43FAA]
          Length = 492

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 69/251 (27%), Gaps = 52/251 (20%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S        + TP        + + D       E     +++ DP CG    L       
Sbjct: 17  SIDKRQIGYYSTP--------SFICDYITMKVMEVNNNGKSVLDPCCGREEMLNPFNKFN 68

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +          ++ + +E                    + +             + +  
Sbjct: 69  IETYG-----IDIIKYKEEYN-----------------CNFKNTDFIKYYYEFVSANNQI 106

Query: 288 TGKRFHYCLSNPPFG---KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
               + Y + NPP+     ++ +D     K+H N        GL   +   +        
Sbjct: 107 KNLNYDYYVLNPPYNCHEVQYIRDNKKELKKHFNDVGVHNMYGLFISAVIDLA------- 159

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN-- 402
                   G    I+   S L +         +R+ +L    I  I   PTDLFF     
Sbjct: 160 ------KDGAVIGIITHDSFLTSKSYQG----LRKKILNTCSIHEITMCPTDLFFEQGAE 209

Query: 403 IATYLWILSNR 413
           + T + IL   
Sbjct: 210 VRTSIVILQKG 220


>gi|270643379|ref|ZP_06222166.1| Phosphofructokinase [Haemophilus influenzae HK1212]
 gi|270317272|gb|EFA28839.1| Phosphofructokinase [Haemophilus influenzae HK1212]
          Length = 231

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 33/142 (23%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------- 227
           +TP  V  L   L     D+           ++D   G+ G L  AMN +          
Sbjct: 5   LTPSYVATLLAKLARVNKDSY----------VWDFATGSAGLLVAAMNEMLIDAKNSITS 54

Query: 228 ----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   +H K   +L   G E+    + + +  M++    S    + +      S   
Sbjct: 55  RDELRQKEAHIKAHQLL---GVEILSSVYMLAILNMILMGDGSSNVLNKNSL----SDFE 107

Query: 284 KDLFTGKRF--HYCLSNPPFGK 303
              F  K F     + NPP+ K
Sbjct: 108 GKGFEDKAFPADAFILNPPYSK 129


>gi|256847935|ref|ZP_05553379.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714995|gb|EEU29972.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 305

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 41/290 (14%)

Query: 126 RLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           R+E         K    I  +L         +  + +  + +   + +      MTP  +
Sbjct: 14  RVEDGLPKPTTVKELETIYKQLDLPHQSSETVRRLLQLSLLKVIQKDTIQPNYQMTPDTI 73

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             L   L+   +  +  + P    T+ DP  GTG  LT  MN++A           +  +
Sbjct: 74  GMLIAYLI---EQIVGLDQPS---TILDPVVGTGNLLTTVMNYLAKVSKQ-----PVQGY 122

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G + +    A       ++ L           +     +S       +    +++ P G 
Sbjct: 123 GIDNDESMLAAASVSSELQGL--------PLQLIHQDAISN--LDVPQVDLAVADLPIGY 172

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   ++   KN +           S    L + H  N L      GG A  V+ S 
Sbjct: 173 Y------PLDDNAKNYQ----TKAASGHSYVHHLLIEHTMNYL----VPGGFAFFVVPSD 218

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            LF  +         +W+     ++  + LPTD+F        + IL N 
Sbjct: 219 -LFKTKESENFV---KWIHSVAFLQGFINLPTDMFRNAEAQKSILILQNH 264


>gi|157826496|ref|YP_001495560.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|157801800|gb|ABV78523.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 480

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 79/246 (32%), Gaps = 43/246 (17%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFED-------FDFSSTIARLEKAGLLY-----K 135
           L    +    + L+ Y        K +F +        + +  ++R +KA   Y     K
Sbjct: 214 LKKYNNNEINDVLQHYANVIRPKIKDLFPEGSDKTTIINGTIFVSRDQKAIDGYGTVFKK 273

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + + F       + +     S ++E  ++   S   +    F TP  VV           
Sbjct: 274 VLEKFRDYG-KLEHIDHDFKSKLFESFLKE--SISKKNWGQFFTPIKVVRAI-------- 322

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQEL----- 247
           + + +       ++ DP CG G F  + +    D      + KI   +   G +      
Sbjct: 323 NEMAEGELKKNMSICDPACGVGKFPLEFVKENLDNFFELKNGKINSKVKIIGFDKGFDKD 382

Query: 248 EPETHAVCVAGMLIR---RLESDPRRDLSKNIQQGSTL---------SKDLFTGKRFHYC 295
           E +T  +  A MLI     ++ +P            +          +        +   
Sbjct: 383 EQKTIILAKANMLIYFCELIKDNPEHTKEFAKLFNDSFILKTNSILGTLSEPIEGEYDLI 442

Query: 296 LSNPPF 301
           L+NPP+
Sbjct: 443 LTNPPY 448


>gi|212640060|ref|YP_002316580.1| adenine-specific DNA methyltransferase BseCI [Anoxybacillus
           flavithermus WK1]
 gi|212561540|gb|ACJ34595.1| Adenine-specific DNA methyltransferase BseCI [Anoxybacillus
           flavithermus WK1]
          Length = 577

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 34/254 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +  +    +L+     FK     +  + DP CG G  L  A+N VA   
Sbjct: 14  KATGAHFTPDKLAEVIAKRILNY----FKGEEKRVIRVLDPACGDGELLL-AINKVAQS- 67

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----GSTLSKDL 286
               +   L   G + + +  A+ +A   + R      R ++K+  +      +    + 
Sbjct: 68  ----MNIQLELIGVDSDID--AINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNT 121

Query: 287 FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              +     ++NPP+   +    + A +   K    GR                      
Sbjct: 122 EELEPADIIIANPPYVRTQILGAEKAQQLRKKFNLKGRVD------------LYQAFLVA 169

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +       G   ++ S+  L      S    IR++L+ N  I  I+ L    FF   +  
Sbjct: 170 MTQQLKSNGIMGVITSNRYLTTKGGES----IRKFLVLNFNILEIMDLGDTKFFDAAVLP 225

Query: 406 YLWILSNRKTEERR 419
            ++    +  E ++
Sbjct: 226 AIFFGEKKSKENQK 239


>gi|116330229|ref|YP_799947.1| methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116123918|gb|ABJ75189.1| Methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 545

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 115/351 (32%), Gaps = 51/351 (14%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             ++    F TP  V       +L  +    +E    ++ + DP  G G F    ++ + 
Sbjct: 9   NKNKFLGQFFTPERVAGFLVDWILGAERITSQEG---LKRILDPAIGNGIFFESVLDKLP 65

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +  +           G +L+ +  +   + +  R  ++       ++             
Sbjct: 66  NLDAEW--------VGFDLDAQCLSASRSALENRISKASILSFYDRDFLL-------QKE 110

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L NPP+ K  +K+      +   G+  R  PG         L++  L   L L
Sbjct: 111 NQKFDAILCNPPYRKISDKNYSRELIQQFEGKSERKLPGTAN------LYVFFLLKCLNL 164

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIATY 406
             N GGRAA ++      +G        I+  L E+ L+ ++        LF     ++ 
Sbjct: 165 I-NVGGRAAFLVPQDFFNSGYG----VFIKSALQESGLLHSLFLFSPQDSLFDEAITSSC 219

Query: 407 LWILSNRKTEERRG-------KVQLINATDLWTSIRNEGKKRRIINDDQRRQ---IL--- 453
           + +L + + E++ G            + + L  S     +   I   D   +   I    
Sbjct: 220 ILLLESSEKEKKSGFYWTRLKPGFFSDTSKLPLSSVESIQTNWISFPDPEEKWSPIFHRL 279

Query: 454 --DIYV-----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
               Y        E  KF+  +    FG     +       F+  K  +  
Sbjct: 280 EKKTYTGEKKADFERKKFNHFVPLTEFGKFTRGIATGDNNFFLFTKEMVEA 330


>gi|91204872|ref|YP_537227.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91068416|gb|ABE04138.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 507

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 79/246 (32%), Gaps = 43/246 (17%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFED-------FDFSSTIARLEKAGLLY-----K 135
           L    +    + L+ Y        K +F +        + +  ++R +KA   Y     K
Sbjct: 241 LKKYNNNEINDVLQHYANVIRPKIKDLFPEGSDKTTIINGTIFVSRDQKAIDGYGTVFKK 300

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + + F       + +     S ++E  ++   S   +    F TP  VV           
Sbjct: 301 VLEKFRDYG-KLEHIDHDFKSKLFESFLKE--SISKKNWGQFFTPIKVVRAI-------- 349

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQEL----- 247
           + + +       ++ DP CG G F  + +    D      + KI   +   G +      
Sbjct: 350 NEMAEGELKENMSICDPACGVGKFPLEFVKENLDNFFELKNGKINSKVKIIGFDKGFDKD 409

Query: 248 EPETHAVCVAGMLIR---RLESDPRRDLSKNIQQGSTL---------SKDLFTGKRFHYC 295
           E +T  +  A MLI     ++ +P            +          +        +   
Sbjct: 410 EQKTIILAKANMLIYFCELIKDNPEHTKEFAKLFNDSFILKTNSILGTLSEPIEGEYDLI 469

Query: 296 LSNPPF 301
           L+NPP+
Sbjct: 470 LTNPPY 475


>gi|117925307|ref|YP_865924.1| type II DNA modification enzyme [Magnetococcus sp. MC-1]
 gi|117609063|gb|ABK44518.1| putative type II DNA modification enzyme [Magnetococcus sp. MC-1]
          Length = 1354

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 89/322 (27%), Gaps = 69/322 (21%)

Query: 24  GDFKHTDFGK----VILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79
           G     ++ +    ++     L + E           E           L      A   
Sbjct: 279 GSLDRKEYFQELLRLVYRLLFLFKAEERGLLHAPDADEAATRIYQEGYALARLRDKARRK 338

Query: 80  FYNTSEYSLST--------LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA----RL 127
            +      L          L        L +    F  +     +  +  +       R 
Sbjct: 339 RHYDGHTDLWQGLRITFTGLAEGAAPLALPALGGLFDADQCPHLDAAEIDNAHLLEAIRA 398

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR------------RFG-------S 168
                  K  +  +  ++  +      + ++YE L+             +FG        
Sbjct: 399 ISFHAKGKALERINYRDMGTEE-----LGSVYESLLELHPRIDVETAPWQFGFVGDDEDE 453

Query: 169 EVSEGA-----EDFMTPRDVV-HLATALLLDPDDALFKESPG------MIRTLYDPTCGT 216
           +  +G+       + TP  +V  L  + L    +   +++P       +   + DP CG+
Sbjct: 454 KSGKGSDRKLTGSYYTPPSLVNELIKSALEPVLERTIRDNPTDPVGALLKLKVCDPACGS 513

Query: 217 GGFLTDAMNHVA----------DCGSHHKIPPILV------PHGQELEPETHAVCVAGML 260
           G FL  A  H+           D     +    L        +G +  P +  +C   + 
Sbjct: 514 GHFLLAAARHMGAEIARLTADSDTPGEQQRQHALREVVRHCIYGVDKNPLSVELCKTALW 573

Query: 261 IRRLE-SDPRRDLSKNIQQGST 281
           I  LE   P   L   I+ G +
Sbjct: 574 IETLEPGRPLTFLDHRIKCGDS 595


>gi|218960674|ref|YP_001740449.1| putative Modification methylase TaqI (Adenine-specific
           methyltransferase TaqI) (M.TaqI) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729331|emb|CAO80242.1| putative Modification methylase TaqI (Adenine-specific
           methyltransferase TaqI) (M.TaqI) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 471

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 65/228 (28%), Gaps = 31/228 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              +  F TP  +V L   L+ D               + +P CG   FL     +    
Sbjct: 39  KRDSGMFFTPEWIVDLMVNLIDD-----TNYVEKEGIKILEPACGLAQFLLGIKRNKPSL 93

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S  K        G E+  E     ++ + I       R D      +            
Sbjct: 94  FSQAK------LFGVEINQEIIN-YLSNLNIANAIDLNRADYLLWQTRSY---------- 136

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+G     +   ++      E  +          G          K     
Sbjct: 137 -FDLIIGNPPYGIPSLSEHYTIKTNPATKEKYKKLYATWF---GKYNVYGAFIEKSINLL 192

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              G+   ++  + +          ++R +L +N   E I+ L  D+F
Sbjct: 193 KDNGQLIFIVPPTFMILDE----FKKLRLFLAQNGKTE-IIYLGADIF 235


>gi|225859801|ref|YP_002741311.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585]
 gi|225721361|gb|ACO17215.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585]
          Length = 317

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++        +       T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV-------EELFTEEEITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLAKKVDYL---------GMEMDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
              N +  ++IL  +
Sbjct: 266 ANANQSKTIFILQKK 280


>gi|326315445|ref|YP_004233117.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372281|gb|ADX44550.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 522

 Score = 47.1 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 62/212 (29%), Gaps = 32/212 (15%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +  + N Y  L      E   G     TP  VV               +     I  L 
Sbjct: 47  GEDPLGNAYCAL---NSPEARRGRGQTFTPDSVVEGML--------TWVRRQRKSIVRLV 95

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G F   A+       +             E++P    +  A ++          
Sbjct: 96  DPGAGSGRFTLAALRMYPKAEAVAA----------EMDPTVALILRANLVAMGFADRTE- 144

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                ++ G      L   K     + NPP+ +    D DA  KE  +  L RFG     
Sbjct: 145 -----VRVGDFRDLKLPAVKGTTLFIGNPPYVRHH--DIDAAWKEWYSRTLRRFG---HD 194

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            S  + L L      LEL   G     +  + 
Sbjct: 195 GSKLAGLHLHFFLKTLELGNPGDLGCYVTAAE 226


>gi|237710844|ref|ZP_04541325.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454688|gb|EEO60409.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1281

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 90/302 (29%), Gaps = 70/302 (23%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +      +L D               + +P+ G G F+          GS    
Sbjct: 105 FYTPKAITDTIADVLHDKKVRPNL--------VLEPSAGMGAFI----------GSVLSD 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T       ML             + I+       +     RF   +
Sbjct: 147 NPQAEVMAFEKDLLTGK-----MLGH-------LYPQQKIRTEGFEKIEKPFLNRFDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGG 354
           SN PFG     D    + E+ NG + +                +H    L+       GG
Sbjct: 195 SNIPFG-----DIAVFDPEYANGSVFKKIAARK----------VHTYFFLKGLDAVRDGG 239

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILS 411
             A + S   L     G      R  +     + + + LP +LF     T +   L IL 
Sbjct: 240 IVAFITSQGVLNTESNGGT----RYMMTRKADLVSAIRLPNNLFTEDANTEVGCDLIILQ 295

Query: 412 NRKTEE-------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + +E       R G V   N T++ ++             D   +I+     R+   +
Sbjct: 296 KNEGKEELSEEDKRLGDVVKSNHTNIVSNGYFL---------DHPERIIHTDAKRDTDPY 346

Query: 465 SR 466
            +
Sbjct: 347 GK 348


>gi|226228126|ref|YP_002762232.1| hypothetical protein GAU_2720 [Gemmatimonas aurantiaca T-27]
 gi|226091317|dbj|BAH39762.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 1105

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 53/308 (17%), Positives = 88/308 (28%), Gaps = 53/308 (17%)

Query: 39  TLLRRLECA--LEPTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L  LE    L+  R  +    L    S   L E  ++   +   NT   + +      
Sbjct: 222 LFLGFLEAKGWLDDRRDFLLHHTLRVLESGGALHERLLRPLFFGTLNTPRRARAVTARLF 281

Query: 96  TRNNLESYIASFSDNAKA------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            R    +    FS  A         F D   ++ I  +      Y+   +          
Sbjct: 282 GRVPFLN-GGLFSPTALERRARTLHFSDDALTALITGVLD---RYRFTAHEDSTSWSEAA 337

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD-----VVHLATALLLDPDDALFKESPG 204
           V   ++   +E L+    +E    +  F TP       +    TALL     A+ +ES  
Sbjct: 338 VDPEMLGRAFESLM---AAEDRRRSGAFYTPPHLVDAAISEALTALLPSIPAAVLEESSN 394

Query: 205 MIRT---------------LYDPTCGTGGFLTDAMNHVADCGSHHKIPP----------I 239
              +               + DP CG+G FL  A+                         
Sbjct: 395 APLSAEAAFTITHRLACLRVLDPACGSGAFLVRALERFDTLLKRAGDQRPAHERRRALLT 454

Query: 240 LVPHGQELEPETHAVCVAGMLIRRL----ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           L   G + +P    +C   + +  +    + D  R              D   G  F + 
Sbjct: 455 LGIFGVDRDPMAVWLCELRLWLAVVIECHDPDIDRIAPLPNLDHHIRIGDSLAGGTFRFA 514

Query: 296 LSNPPFGK 303
              PP G+
Sbjct: 515 ---PPSGR 519


>gi|288927824|ref|ZP_06421671.1| helicase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330658|gb|EFC69242.1| helicase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 1102

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +             E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKQAGMVDA------------MEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEDKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG    + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLTFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|296137341|ref|YP_003644583.1| type III restriction protein res subunit [Thiomonas intermedia K12]
 gi|295797463|gb|ADG32253.1| type III restriction protein res subunit [Thiomonas intermedia K12]
          Length = 1676

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 91/327 (27%), Gaps = 44/327 (13%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCG 215
             +Y+   R    +++E      TP +VV      +     + F ++       + DP  G
Sbjct: 895  ELYDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVAHLLQSEFGQTLGSPGVHILDPFTG 954

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL---ESDPRR 270
            TG F+T  +                  H  E+    + +    +  +   +   +  P  
Sbjct: 955  TGTFITRLLQSGLIEPEQLPAKYKSEIHANEIVLLAYYIAAINIEAVYHGIVGGDYQPFE 1014

Query: 271  DLSKNIQQGSTLSKDLFTG------------KRFH--YCLSNPPFGKKWEKDKDAVEKEH 316
             +           +DL               K+      + NPP+    +   D  E   
Sbjct: 1015 GICLTDTFQLYEKEDLIDALLEKNSARRKRQKKLDIRVIVGNPPYSDGQDSANDINENIE 1074

Query: 317  KNGELGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                  R      + SD  M+  ++                 G    V ++  L    + 
Sbjct: 1075 YPHLDARIRSTYAERSDIRMVRSLYNSYIRAIRWASDRIGNAGVIGFVTNAGFLSAISSD 1134

Query: 372  SGESEIRRWLLENDLIEAIVALP--------------TDLF-FRTNIATYLWILSNRKTE 416
                 +RR L E      ++ L                ++F   +     + +L      
Sbjct: 1135 G----MRRCLAEEFSSLYVLHLRGNARTSGELRRKEKDNVFGMGSRAPIAITLLVKNPAA 1190

Query: 417  ERRGKVQLINATDLWTSIRNEGKKRRI 443
               GK+   +  D  +      + +++
Sbjct: 1191 AHPGKIHFHDIGDYLSKEEKLAEVQKL 1217


>gi|148656659|ref|YP_001276864.1| hypothetical protein RoseRS_2538 [Roseiflexus sp. RS-1]
 gi|148568769|gb|ABQ90914.1| hypothetical protein RoseRS_2538 [Roseiflexus sp. RS-1]
          Length = 1243

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 72/247 (29%), Gaps = 45/247 (18%)

Query: 145 LHPDTVPDRVMSNIYEHLIR--------------RFGSEVSEGA--EDFMTPRDVVHLAT 188
           ++   +    + ++YE L+                F +  +E        TP ++V    
Sbjct: 410 INYAALDTEELGSVYESLLELHPTIAWRGAVPVVAFAARSAERRATGSHYTPPELVAPLV 469

Query: 189 ALLLDPD---------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
              L+P              +E+  +  T+ DP CG+G FL  A  H+    +  +    
Sbjct: 470 QHALEPALRARLAPCPTPAEREAALLGLTVLDPACGSGHFLLAAARHLGTELARIRSGDA 529

Query: 240 L----------------VPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGST- 281
                              +G +  P    +C   + +       P   L   I+ G + 
Sbjct: 530 APAPEIVRDAVRDVIAHCLYGVDKNPLAVELCRVALWLEGHARGRPLTFLDHRIRCGDSL 589

Query: 282 -LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFL 339
               DL   +      +  P G         V+ +  +   +  F  G        +   
Sbjct: 590 LGVADLQALEAGIPDDAYRPLGTDDRAHARQVKARNAREARMDLFRHGFVTAPLADLAAQ 649

Query: 340 MHLANKL 346
           MH    +
Sbjct: 650 MHQVAAM 656


>gi|305680806|ref|ZP_07403613.1| N-6 DNA Methylase [Corynebacterium matruchotii ATCC 14266]
 gi|305659011|gb|EFM48511.1| N-6 DNA Methylase [Corynebacterium matruchotii ATCC 14266]
          Length = 455

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 37/229 (16%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +  T++DP CG GG L                   +   G ++ P    V      +
Sbjct: 83  GTTVTDTVFDPACGIGGTLLALAR-----------AHDVAIVGADIAPTAVDVAKLQARL 131

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             + +D R   S      S+        +++   +   P  ++        +  H     
Sbjct: 132 LGVTADFRCRDSLAHAASSSR-------RQYRTVVVEAPLNQQ-------ADTGHCQNLA 177

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F   +   +     FL+     L    +G G      S                    
Sbjct: 178 RSFDENIMVPARAHEAFLLCTLRHL--TSDGYGYVLTSFSPGVSHQSAELRRLLL----- 230

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
                +EAI+ LP      +++ T LW+L    T        +I+A+++
Sbjct: 231 -RRRQVEAIIQLPEKFLAYSHVNTLLWVLRGSPTAA----TAVIDASNI 274


>gi|85372973|ref|YP_457035.1| type II restriction enzyme, methylase subunit [Erythrobacter
           litoralis HTCC2594]
 gi|84786056|gb|ABC62238.1| type II restriction enzyme, methylase subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 854

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 24/121 (19%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVS------------EGAEDFMTPRDVVHLATALLLDPDDA 197
           +P  ++  +YE  + +                  +    + TP  +V       L     
Sbjct: 219 LPADILGQVYERFLGKVIRLAGSRAIIEEKPEVKKAGGVYYTPAYIVDYIVKNTLGKLLE 278

Query: 198 LFKESPGMIR----------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--GQ 245
               +                + DP CG+G FL  A  ++ D      +      +  G+
Sbjct: 279 GKTPAQASGEDKRTKNPAPVRVIDPACGSGSFLIGAYQYLLDWYRDAYVSDDPAKYTSGK 338

Query: 246 E 246
           E
Sbjct: 339 E 339


>gi|114326583|ref|YP_743742.1| type III restriction enzyme, res subunit [Nitrosomonas eutropha C91]
 gi|114309522|gb|ABI60764.1| type III restriction enzyme, res subunit [Nitrosomonas eutropha C91]
          Length = 1513

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 96/368 (26%), Gaps = 64/368 (17%)

Query: 144  ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +++      R++  +Y+   R     ++E      TP +VV      +       F  S 
Sbjct: 681  DVNSAEGKQRIVVELYDKFFRNAFPRMTERLGIVYTPVEVVDFILHSVEHVLKTEFNSSM 740

Query: 204  GMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--- 259
                  + DP  GTG F+T  +                  H  E+    + +    +   
Sbjct: 741  ADDNVHILDPFTGTGTFITRLLQSGIIPEERLPYKYQHEIHANEIVLLAYYIAAINIEAT 800

Query: 260  -------LIRR------------LESDPRRDLSKNIQQGSTLSKDLFT------------ 288
                    I              +E  P + +           +D F             
Sbjct: 801  YHGILVGNIHGEQDNDLIVDKPYIEYQPFKGICLTDTFQMAEKEDQFDELLKKNSNRRKR 860

Query: 289  --GKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMH 341
                     L NPP+  G+K   D +A     K  E  R    +       +      + 
Sbjct: 861  QQNLDIRVILGNPPYSAGQKSANDNNANVDYPKLDERIRSTYTVRSQATNKNALYDSYIR 920

Query: 342  LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD----- 396
                        G    V ++  L           +R+ L+E      I  L  +     
Sbjct: 921  AIRWSSDRIKDRGVIGFVTNAGFLEANVGDG----LRQCLVEEFSNLYIFHLRGNQRTSG 976

Query: 397  ---------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
                     +F   +     + IL  +   + RG +      D+   +  E K   I   
Sbjct: 977  ERSRKEGGKIFGSGSRAPIAISILVKKPEAKVRGNIYF---HDIGDYLTREQKLEVITGF 1033

Query: 447  DQRRQILD 454
            +    I  
Sbjct: 1034 ESINGITK 1041


>gi|319936976|ref|ZP_08011386.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
 gi|319807912|gb|EFW04491.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
          Length = 2439

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S        F TP +V+      +        ++       L +P+CG G F+   
Sbjct: 926  EEYASARESTLTAFYTPPEVITAIYKAM--------EQMGFQEGNLLEPSCGIGNFI--- 974

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G           +G EL+  +  +              ++   K         
Sbjct: 975  -------GMLPDTMQDSKIYGVELDTISAGIA-------------QQLYQKTTIAAQGFE 1014

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG                     F     +      L   +  
Sbjct: 1015 ETNLPDSFFDGVVGNVPFGD--------------------FKVSDKRYDKHKFLIHDYFF 1054

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A+V S   +           +R+++ +   +   + LP + F     
Sbjct: 1055 AKSLDKLRPGGVMALVTSKGTM-----DKETLAVRKYIAQRAELLGAIRLPNNTFKGNAG 1109

Query: 401  TNIATYLWILSNR 413
            T + + + IL  R
Sbjct: 1110 TEVVSDILILQKR 1122


>gi|299144533|ref|ZP_07037612.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517621|gb|EFI41361.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 479

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 102/275 (37%), Gaps = 32/275 (11%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV------ 241
           T  + +  D++      + +T+ + +CG G  L + +N   +     K     +      
Sbjct: 19  TNYVKELLDSVGYHKNIVNKTILENSCGDGNILVEIVNRYIEEAIELKFSNKKIKKGLEN 78

Query: 242 -PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G E++      C+  + +  ++ +  +D+   I     L  ++    +F + + NPP
Sbjct: 79  NIFGFEIDKNQFEKCICNLNLL-VKKNGIQDVEWKIYNEDYLKSEV--NIQFDFIVGNPP 135

Query: 301 ---FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
              +    ++++  ++ +++    G+F             F+ H    L    +  G+ +
Sbjct: 136 YITYSNLSQEERTFIKDKYETCRQGKFDY--------CYAFIEHSIKSL----SSEGKMS 183

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            ++ SS             + ++++E  D  +        +F    + + + I+  +   
Sbjct: 184 YLIPSSIFKTVFGNKLREFMVQYIVEIKDYTK------EKIFDNALVKSAIIIVDKKDCS 237

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           E+   + + N + L+   +   KK    N+    +
Sbjct: 238 EKIKYINMSNDSGLYICKKTIRKKWVFSNEFNIGK 272


>gi|148927924|ref|ZP_01811331.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
 gi|147886727|gb|EDK72290.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
          Length = 331

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LPT +F+   +   +    NR    +  + + +   D+ T+     K+++ + +     
Sbjct: 2   RLPTGIFYANGVKANVIFFDNR-PASKEVQTKDVWVYDMRTNQHFTLKEKK-LANADLAD 59

Query: 452 ILDIY-----VSRENGKFSRMLDYRTFGYRRIK 479
            +  Y       R   +  +   Y     R   
Sbjct: 60  FIKCYNPDNRHQRSETERFKKFTYDEVVTRDKT 92


>gi|153811865|ref|ZP_01964533.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
 gi|149831999|gb|EDM87084.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
          Length = 2592

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 69/253 (27%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +     F T   V+      L +               + +P+CG G F+   
Sbjct: 1044 EEYSAARASTLNAFYTSPTVIKAMYEALGNMGLKQGN--------ILEPSCGVGNFM--- 1092

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G   +       +G EL+P +  +               +   KN        
Sbjct: 1093 -------GLLPESMSAANMYGVELDPVSGQIAK-------------QLYQKNRIAVQGFE 1132

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  +    F   + N PFG     D+             R+            +   +  
Sbjct: 1133 ETSYPDSFFDCVIGNVPFGAYQVSDRK----------YDRYH----------FMIHDYFI 1172

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
             K       GG  A+V SS  +          E+R++      +   + LP + F     
Sbjct: 1173 AKSLDLVRPGGVVAVVTSSGTMDKQNP-----EVRQYFANRADLLGAIRLPNNAFQRNAN 1227

Query: 401  TNIATYLWILSNR 413
             ++   +     R
Sbjct: 1228 ASVVADILFFQKR 1240


>gi|313667120|gb|ADR73010.1| RM.BsgI [Lysinibacillus sphaericus]
          Length = 1035

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/465 (11%), Positives = 115/465 (24%), Gaps = 124/465 (26%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSN-----IDLESFVKVAGYSFYNTSEYSLSTLG 92
              +R +E     ++  ++E        N      +L+         F     +  + + 
Sbjct: 252 LIFIRIIEDRNIESKEFLKEIVEMHEQDNSISVKNELDKLCIELNKKFNGLVFHDHTFVN 311

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                N +   I           ++  +        K+   +++ K              
Sbjct: 312 EALIDNEILIVI----------IDNLYY-------PKSPYNFRLIK-------------P 341

Query: 153 RVMSNIYEHLIRR------------FGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALF 199
            ++  I+E  +                    +    + TP  +V       L        
Sbjct: 342 EILGRIFEQFLGEKIEIIDGKITLGLKDINKKSGGVYYTPSYIVEKIVENTLSKKLHNDI 401

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--------------------------- 232
                    + D  CG+G FL  +  ++ D                              
Sbjct: 402 TIENLEQIKIADIACGSGSFLISSYKYLIDKFQYIYSKCSEADVQTLISNNLVFIDNGKL 461

Query: 233 -----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--------DLSKNIQQG 279
                H K        G +++ +   V    + I  LE   R         DL+ NI+ G
Sbjct: 462 MLTMEHKKGILQQNIFGVDIDSQAIQVAKLSLYITMLEEGYREGTLRPILPDLNDNIKHG 521

Query: 280 STLSK--------------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +++                            D+     F   L NPP+ +         E
Sbjct: 522 NSIIDNEILFEDDINYDIDATLPFDWEYAFPDIIDNGGFDVILGNPPYIR-----IQIFE 576

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           + +    +             +    +    K     N  G    ++ +           
Sbjct: 577 ELYGKDVVNYLKKKYVSAEKFNFDIYVVFIEKALSLLNDQGILGYIVMNKFFTTQYG--- 633

Query: 374 ESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEE 417
             ++R  +    L+  I+    + +F      T + IL     +E
Sbjct: 634 -EKLRELITSQKLLYEIIDFGINEIFNNATTYTCILILDKTNPDE 677


>gi|86150439|ref|ZP_01068664.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85839034|gb|EAQ56298.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni CF93-6]
          Length = 347

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 67/199 (33%), Gaps = 12/199 (6%)

Query: 70  ESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           E+  +  G      S    E     L     +  +++YI      +   F   +  +   
Sbjct: 125 EAMKEFLGEKITFVSNEDIEKDFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKEL 184

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A +L +I + F+  +L  ++  ++ + N++E  +++    + +    F TP  +  
Sbjct: 185 FLKNALVLKEIVELFANYKLTQNS-TNQFLGNLFELFLQK---GMKQDEGQFFTPIQICE 240

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHG 244
                L   +             + D  CG G FL    N +    +  ++       +G
Sbjct: 241 FIMYSLPLHE---MLSKNSKALRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYG 297

Query: 245 QELEPETHAVCVAGMLIRR 263
            E E     V      +  
Sbjct: 298 IEKEYRLSKVSKVSSAMYG 316


>gi|254426590|ref|ZP_05040305.1| hypothetical protein S7335_1273 [Synechococcus sp. PCC 7335]
 gi|196187602|gb|EDX82569.1| hypothetical protein S7335_1273 [Synechococcus sp. PCC 7335]
          Length = 296

 Score = 47.1 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 7/131 (5%)

Query: 159 YEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           Y+  +     +    ++    F TP  +    T +         K     I T+ +P  G
Sbjct: 90  YQDFLGEIAEDELLLNKRGGQFFTPYIICQAMTKMSFGDMKEQLKGK--GILTVCEPAVG 147

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G  +  +   VA  G   +    L     ++  +   +    +    L++  R   S +
Sbjct: 148 GGAMVIASAEEVASQGIDPRSC--LQFDCTDVSRDAFNMAYIQLSALGLQAVVRHGNSLS 205

Query: 276 IQQGSTLSKDL 286
           ++     +   
Sbjct: 206 MEYWEHRATPQ 216


>gi|15611993|ref|NP_223645.1| hypothetical protein jhp0928 [Helicobacter pylori J99]
 gi|4155507|gb|AAD06506.1| putative [Helicobacter pylori J99]
          Length = 2231

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 122/401 (30%), Gaps = 76/401 (18%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP     L    +    D L   +    + +++P+ GTG F+           +H   
Sbjct: 525 YYTP----KLVIDSIYQGLDQLGFNNDNHPKEIFEPSLGTGKFI-----------AHAPS 569

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL+P              + ++  + L  N    +T  ++    + +   +
Sbjct: 570 DKNYRFIGTELDP--------------ISANLSKFLYPNQVIQNTALENYQFYQEYDAFV 615

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+G    K   + +KE  N  +  +  G                 +L+      G  
Sbjct: 616 GNPPYGN--HKIYSSNDKELSNESIHNYFLGK-------------AIKELK----DDGIG 656

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A V+SS  +      +   ++R  + +N      + LP  +F  T       I+  +K  
Sbjct: 657 AFVVSSWFM-----DAKNPKMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGV 711

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIIN----------DDQRRQILDIYVS---RENGK 463
           E+        A   +  I N      +               + +I++   +    +  K
Sbjct: 712 EKATNQSFTKAMPYYDKILNSLDDDTLFALQNNRFDSFIPSDQLKIVNAVANHFGFKQEK 771

Query: 464 FSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             R    +D   FGY           + +  + S  L++  L           L  L   
Sbjct: 772 LQRWYEKIDTANFGYSTQDYKIIKDFIDKVGKNSINLNEQTLNEYFIHHPENILGHLSLE 831

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                 +   +QIY Y       +    S   K    K  K
Sbjct: 832 KTRYRFETNGEQIYKYDLQALEDESLDLSQALKQAIEKLPK 872


>gi|329965381|ref|ZP_08302305.1| hypothetical protein HMPREF9446_03922 [Bacteroides fluxus YIT
           12057]
 gi|328522173|gb|EGF49287.1| hypothetical protein HMPREF9446_03922 [Bacteroides fluxus YIT
           12057]
          Length = 250

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 25/130 (19%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +        +    F TP  +  L              E     + + DPTCG+G  
Sbjct: 89  ELHMAYCSKSGQQYLGQFFTPASICELMVQ-------CTRTEKGTTGKRISDPTCGSGRL 141

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L            +H   P     G+++      + V  MLI     +            
Sbjct: 142 LLA----------YHVHFPGNYLVGEDISRTCCMMTVCNMLIHGCVGEVI--------CH 183

Query: 280 STLSKDLFTG 289
            +L  D FT 
Sbjct: 184 DSLMPDKFTD 193


>gi|197294487|ref|YP_001799028.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853814|emb|CAM11755.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 78/282 (27%), Gaps = 68/282 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  V      +L      +          + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRVL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPEISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER--------RGKVQLINATDLWTS 433
                + + I +    +          +     IN+++ +  
Sbjct: 183 NVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIP 224


>gi|313144182|ref|ZP_07806375.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313129213|gb|EFR46830.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 932

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL--- 191
                 S  +L  + +      ++YE  ++ +   + E    + TP  VV      +   
Sbjct: 294 HDLNKLSQKDLLGEHIYKDPYLHLYEDFLKEYDESLREVRGVYYTPAPVVKFIIDSIDLT 353

Query: 192 ---LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----ILVPH 243
                    L         TL D   GTG FL +A     +  + + +       I   +
Sbjct: 354 LQKDFNKQGLQSAITDDNITLLDFATGTGTFLLEAFRKALESSNKNSVKYNPKALIQRFY 413

Query: 244 GQELEPETHAV 254
           G E     + +
Sbjct: 414 GFEFLIAPYTI 424


>gi|281358272|ref|ZP_06244755.1| type III restriction protein res subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281315362|gb|EFA99392.1| type III restriction protein res subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 1610

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 102/335 (30%), Gaps = 58/335 (17%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLEL 348
           +++   + N PF                    GRF P      S  +     +   +   
Sbjct: 203 EQYDLVIGNVPF--------------------GRFAPYDRNYRSYNAWNLHNYFIARALD 242

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
              G G A ++ SSS +    +    +  R  L++         LP + F  T I   + 
Sbjct: 243 CLKGNGHAVLLTSSSTMDKPGSMPLVTNGRAGLVKAY------RLPNNTFAGTEIVADIL 296

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           IL     E   G +Q ++                   DD  R  ++ Y ++        L
Sbjct: 297 ILKKNYRETLSGNLQWVDT-----------------ADDTGRIEVNCYFAQHPEHVFGKL 339

Query: 469 DYRTFGYRRIKVLRPL-RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 Y RI     L     + +   +AR E      ++      F   + +    ++ 
Sbjct: 340 SNTGKMYGRINTPTVLPDGKSLKEHFDIARKEFMPALPEVPENTDLFGNALPEATTPKVE 399

Query: 528 PYGWAES----FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
              +AE       KE  K+    ++        +   I+  G +      + D  GE + 
Sbjct: 400 VISYAERTDIPEEKEPPKNCREYSIFSTLDA--VYQVIDGMGHR------LKDRKGENLT 451

Query: 584 DTNL-TEYENVPYLESIQDYFVREVSPHVPDAYID 617
                  +  V    ++ +    ++  + PD  I+
Sbjct: 452 LKETQKVHSFVKIKNALNELIEAQLDFNAPDEEIE 486


>gi|298385283|ref|ZP_06994842.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298262427|gb|EFI05292.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1882

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 90/302 (29%), Gaps = 70/302 (23%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +      +L D               + +P+ G G F+          GS    
Sbjct: 5   FYTPKAITDTIADVLHDKKVRPNL--------VLEPSAGMGAFI----------GSVLSD 46

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T       ML             + I+       +     RF   +
Sbjct: 47  NPQAEVMAFEKDLLTGK-----MLGH-------LYPQQKIRTEGFEKIEKPFLNRFDLAI 94

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGG 354
           SN PFG     D    + E+ NG + +                +H    L+       GG
Sbjct: 95  SNIPFG-----DIAVFDPEYANGSVFKKIAARK----------VHTYFFLKGLDAVRDGG 139

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILS 411
             A + S   L     G      R  +     + + + LP +LF     T +   L IL 
Sbjct: 140 IVAFITSQGVLNTESNGGT----RYMMTRKADLVSAIRLPNNLFTEDANTEVGCDLIILQ 195

Query: 412 NRKTEE-------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + +E       R G V   N T++ ++             D   +I+     R+   +
Sbjct: 196 KNEGKEELSEEDKRLGDVVKSNHTNIVSNGYFL---------DHPERIIHTDAKRDTDPY 246

Query: 465 SR 466
            +
Sbjct: 247 GK 248


>gi|291556525|emb|CBL33642.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 535

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 27/134 (20%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            FT +++   +S P FG +   + +D + +E                    ++ + +L  
Sbjct: 181 GFTTEKYDLIISIPIFGGRVLVNGEDFISREP------------------DLIAVQNLLY 222

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNI 403
            +    N  G  A+VL +   F G + +    +R ++  N  I+ I  LP  LF   T+I
Sbjct: 223 HI----NMDGNLAMVLPAKITFGGGSTAA---LREYIERNYKIKEISVLPAGLFTPYTSI 275

Query: 404 ATYLWILSNRKTEE 417
            TYL++ S  +T++
Sbjct: 276 RTYLFVFSTGRTDD 289


>gi|237725678|ref|ZP_04556159.1| DNA methylase BmhA [Bacteroides sp. D4]
 gi|317474062|ref|ZP_07933341.1| hypothetical protein HMPREF1016_00320 [Bacteroides eggerthii
           1_2_48FAA]
 gi|229435486|gb|EEO45563.1| DNA methylase BmhA [Bacteroides dorei 5_1_36/D4]
 gi|316909904|gb|EFV31579.1| hypothetical protein HMPREF1016_00320 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1974

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 90/302 (29%), Gaps = 70/302 (23%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +      +L D               + +P+ G G F+          GS    
Sbjct: 97  FYTPKAITDTIADVLHDKKVRPNL--------VLEPSAGMGAFI----------GSVLSD 138

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T       ML             + I+       +     RF   +
Sbjct: 139 NPQAEVMAFEKDLLTGK-----MLGH-------LYPQQKIRTEGFEKIEKPFLNRFDLAI 186

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGG 354
           SN PFG     D    + E+ NG + +                +H    L+       GG
Sbjct: 187 SNIPFG-----DIAVFDPEYANGSVFKKIAARK----------VHTYFFLKGLDAVRDGG 231

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILS 411
             A + S   L     G      R  +     + + + LP +LF     T +   L IL 
Sbjct: 232 IVAFITSQGVLNTESNGGT----RYMMTRKADLVSAIRLPNNLFTEDANTEVGCDLIILQ 287

Query: 412 NRKTEE-------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + +E       R G V   N T++ ++             D   +I+     R+   +
Sbjct: 288 KNEGKEELSEEDKRLGDVVKSNHTNIVSNGYFL---------DHPERIIHTDAKRDTDPY 338

Query: 465 SR 466
            +
Sbjct: 339 GK 340


>gi|197294766|ref|YP_001799307.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171854093|emb|CAM12073.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.7 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 78/282 (27%), Gaps = 68/282 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     ++      TP  V      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNKKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-RKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F         +++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKQLQKFLNQEYPEISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER--------RGKVQLINATDLWTS 433
                + + I +    +          +     IN+++ +  
Sbjct: 183 NVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIP 224


>gi|316932251|ref|YP_004107233.1| hypothetical protein Rpdx1_0868 [Rhodopseudomonas palustris DX-1]
 gi|315599965|gb|ADU42500.1| hypothetical protein Rpdx1_0868 [Rhodopseudomonas palustris DX-1]
          Length = 1487

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 73/268 (27%), Gaps = 40/268 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87
           +     L   E          +            L +       +      +        
Sbjct: 281 VYRLIFLMVAEDRNLLHPEKAKPDARKLYAEGYSLAALRAQCYRAASWDKHHDRYEGVKI 340

Query: 88  -LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-EL 145
               L        L +    FS +     E     +      +A        + +GI  +
Sbjct: 341 VFHALAHGQEVLALPALGGLFSTDKLPHLETARLRNRAF--MEALYRLSWLSDKAGIVPV 398

Query: 146 HPDTVPDRVMSNIYEHLIR------------RFGSEVSEGAED-------FMTPRDVVHL 186
           +   +    + ++YE L+              F SE +E   +       + TP  +V  
Sbjct: 399 NWRAMETEELGSVYESLLELQPQLGEDGKTLHFASEAAEQKGNQRKITGSYYTPDSLVQA 458

Query: 187 ATALLLDPD------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
                LDP       +A   E   +  ++ DP CG+G FL  A   +A   +  +     
Sbjct: 459 LLDTALDPVLDKTEAEADDPEQALLELSVIDPACGSGHFLLAAARRIATRLARIRAEGTP 518

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDP 268
                +       V  +   +  ++ +P
Sbjct: 519 SLA--DFRHALRDVARS--CLHGVDRNP 542


>gi|193216909|ref|YP_002000151.1| methyltransferase, HsdM related [Mycoplasma arthritidis 158L3-1]
 gi|193002232|gb|ACF07447.1| methyltransferase, HsdM related [Mycoplasma arthritidis 158L3-1]
          Length = 517

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI------ELHPDTV-PDRVMSNIYEH 161
           ++     EDF      A + + GL     K    I      EL  + +     +  +YE 
Sbjct: 5   NDYIISLEDFTLDFYKAMINELGLSKTWNKILEFITDKTIEELSFNKLLSFHNLGELYEI 64

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    + TP+DV  +   LLL+ +          I ++ D  CGTG  + 
Sbjct: 65  GLAHSNKIAKKDMGKYYTPQDVSRVMAELLLENE----------ITSIADVGCGTGNLII 114

Query: 222 DAMNHVADCGS 232
           + ++ +     
Sbjct: 115 EVLDMMKAIKG 125


>gi|331089477|ref|ZP_08338376.1| hypothetical protein HMPREF1025_01959 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404845|gb|EGG84383.1| hypothetical protein HMPREF1025_01959 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 286

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 11/153 (7%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +      + +I+  L     +   +    F TP  V  L   +  +   A+ KE   + 
Sbjct: 131 EENPEQDFLGSIFMEL-----NLGDKSNSQFFTPYHVCELMAKVTEEDVAAVVKEKGYI- 184

Query: 207 RTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            T+ D  CG G  L  A+N         +      ++   Q+++     +C   + +  +
Sbjct: 185 -TINDSCCGAGATLIAAINEARKQLEKVNLNFQNHVLVVAQDIDEIVALMCYIQLSLLGV 243

Query: 265 ESDPRRD--LSKNIQQGSTLSKDLFTGKRFHYC 295
            +  +     ++ +          FT   F   
Sbjct: 244 AAYIKVGDVFTQPMSTDDNGENYWFTMMYFSDV 276


>gi|167763598|ref|ZP_02435725.1| hypothetical protein BACSTE_01973 [Bacteroides stercoris ATCC
           43183]
 gi|167698892|gb|EDS15471.1| hypothetical protein BACSTE_01973 [Bacteroides stercoris ATCC
           43183]
          Length = 1355

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 81/250 (32%), Gaps = 55/250 (22%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S  +     F TP  VV           ++L        R L DP+ GTG      +  V
Sbjct: 17  SLKNSSLTAFYTPEPVVTAM-------QESLQLPGIRPGRFL-DPSAGTG-MFISGLKDV 67

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           ++             H  E +  T  +  +     R+  D  + +               
Sbjct: 68  SE------------VHCFEKDKLTGKILSSLYPESRVTIDGFQSIQPYYNNY-------- 107

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    SN PFG     D+D            R    + K S    L  +H    L+
Sbjct: 108 ----FDMVSSNIPFGNTRVYDRD----------FDRSEDVVRKSS----LAAVHNYFFLK 149

Query: 348 LP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403
                + GG  A + +S  + + +       +R WL+ +  + + + LP +LF    T +
Sbjct: 150 GMDTLHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFTDAGTEV 205

Query: 404 ATYLWILSNR 413
            + L +L   
Sbjct: 206 GSDLIVLQKN 215


>gi|92109757|ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
 gi|91802839|gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
          Length = 1700

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 50/237 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F                +       G EL+P T  +         
Sbjct: 188 WRGGRVLEPGIGTGLFP---------ALMPEGLRKTSHVTGIELDPVTARIA-------- 230

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I +G     +L     F   + NPPF  +  +   A            
Sbjct: 231 ----GLLQPRARIIRGDFARTELPAS--FDLAIGNPPFSDRTVRSDRAYRSRGLRLHD-- 282

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                            +   +       G  AA V SS  +    + +     R  + +
Sbjct: 283 -----------------YFIARAIDLLKPGALAAFVTSSGTMDKADSSA-----REHIAK 320

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           +  + A + LP   F     T++   L     RK  E  G +  ++  ++  +I +E
Sbjct: 321 SADLIAAIRLPEGSFRASAGTDVVVDLLFFRKRKIAEPEGDLSWLDIEEVRPAIEDE 377


>gi|281425567|ref|ZP_06256480.1| putative DNA methylase [Prevotella oris F0302]
 gi|281400305|gb|EFB31136.1| putative DNA methylase [Prevotella oris F0302]
          Length = 1579

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +        +    E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEDKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                 G                  GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTRTIHNYFFVKGLDAI------------KEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVDSDLIVLQKQSGKE 305


>gi|191637971|ref|YP_001987137.1| Putative modification methylase LaaG [Lactobacillus casei BL23]
 gi|190712273|emb|CAQ66279.1| Putative modification methylase LaaG [Lactobacillus casei BL23]
 gi|327382047|gb|AEA53523.1| Snf2 family protein [Lactobacillus casei LC2W]
 gi|327385201|gb|AEA56675.1| Snf2 family protein [Lactobacillus casei BD-II]
          Length = 336

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         +  P  ++ + D   GTG  L   MN +     H+     +  +G +
Sbjct: 104 MASLATFMVTVFAQHLPKKMQ-VADLAVGTGNLLFAVMNQL-----HNARQVAVKGYGID 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      +++L+ D     +           D    K     +S+ P G    
Sbjct: 158 NDETLLAVAGMSSTLQQLDVDLFHQDAL----------DNLLFKDIDVVVSDLPVGYY-- 205

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V++  K  E              S    + +   + +   GG    +    S +F
Sbjct: 206 ----PVDERAKQFE-------TAAAKGHSYAHHLLIEQSMRVLKPGG--LGLFYVPSQVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
                +G +    WL ++   + ++ LP D F        L +L     + +R K
Sbjct: 253 RSEEAAGLTA---WLAKSTYFQGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|239631870|ref|ZP_04674901.1| adenine-specific DNA methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526335|gb|EEQ65336.1| adenine-specific DNA methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 336

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         +  P  ++ + D   GTG  L   MN +     H+     +  +G +
Sbjct: 104 MASLATFMVTVFAQHLPKKMQ-VADLAVGTGNLLFAVMNQL-----HNARQVAVKGYGID 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      +++L+ D     +           D    K     +S+ P G    
Sbjct: 158 NDETLLAVAGMSSTLQQLDVDLFHQDAL----------DNLLFKDIDVVVSDLPVGYY-- 205

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V++  K  E              S    + +   + +   GG    +    S +F
Sbjct: 206 ----PVDERAKQFE-------TAAAKGHSYAHHLLIEQSMRVLKPGG--LGLFYVPSQVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
                +G +    WL ++   + ++ LP D F        L +L     + +R K
Sbjct: 253 RSEEAAGLTA---WLAKSTYFQGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|189466897|ref|ZP_03015682.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
 gi|189435161|gb|EDV04146.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
          Length = 1000

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 112/384 (29%), Gaps = 78/384 (20%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V      +L          SP     + D  CG G F     NH+ +  +  
Sbjct: 71  GQFFTPHEVCRDMVDVL----------SPTSSEMILDMCCGMGNFF----NHLPNQHN-- 114

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G +++ +  AV                 L  +        +   + +RF  
Sbjct: 115 -------AYGFDIDSKAVAVAR--------------YLYPDAHIEKCDIQQYHSEQRFDA 153

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  K+         + +  +          ++    L ++  A+ ++       
Sbjct: 154 IIGNPPFNLKF---------DFRLSQEYYIDKAYHLLNPAGFLMIIVPASFMQNEFWEKS 204

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI---ATYLWILS 411
           R   V                                 L    F    +    T + +  
Sbjct: 205 RVGRVNEDFSFIGQT----------------------RLSPQAFTSVGVDNFNTKIMVFL 242

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            R    +  ++   NA D + S+     K R+    + +  L + + RE  +  +  +  
Sbjct: 243 RR---SQHIEMNPYNA-DEFVSMAEL--KERVKKAREMKHCLRLDLMRETNRIDK-EELE 295

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y+  K +  L+    L+K     +     +R   P   +    + +   +++     
Sbjct: 296 HFEYKLAKYMYELKAHKKLNKHIDKAVALVTKFRNQKPPENATNEQMKEWERKKLTTAKV 355

Query: 532 AESFVKESIKSNEAKTLKVKASKS 555
             +  K     N     +V   K+
Sbjct: 356 LATIRKYITSQNVVPRKEVALVKT 379


>gi|332289620|ref|YP_004420472.1| Eco57I restriction endonuclease [Gallibacterium anatis UMN179]
 gi|330432516|gb|AEC17575.1| Eco57I restriction endonuclease [Gallibacterium anatis UMN179]
          Length = 1426

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 72/521 (13%), Positives = 143/521 (27%), Gaps = 85/521 (16%)

Query: 59   YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI---ASFSDNAKAIF 115
              A  G    +E  ++     F  T    L   G  N        I     F +      
Sbjct: 844  QKAESGKQHQVEDDIRSRLRGFSRTIPSFLMAYGMENISLANFDEIVDDDVFKEVTGISL 903

Query: 116  EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            E F       +     +  +  K F    L   T          E  I  +     +   
Sbjct: 904  EQFRQLRDKYQFFDENVFNESVKEF----LAKRTALADYFDETLEEDIFDYIP--PQKTN 957

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN--------HV 227
               TP+ VV +    L      +F +   M +T  D    +G FLT+ +          +
Sbjct: 958  QIFTPKKVVKMMLDKLEQECPDIFTD---MHKTFADLYMKSGLFLTEIVKRLYKGLEKEI 1014

Query: 228  ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---- 283
             D     K       +G       + +      +   E    +   KNI           
Sbjct: 1015 PDKTERLKHIIEKQIYGFAPSEIIYRIARN--FVLGFEQGILQIEGKNIICQDLTDCAMG 1072

Query: 284  ----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                ++L    +F   + NPP+            +E+  GE                + +
Sbjct: 1073 KKSIEELGEKMKFDVVVGNPPY------------QENAKGE------------STKDMPI 1108

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV--ALPTDL 397
             H    L      G +  ++  +  LFN  AGS +    + +L ++ ++ +       ++
Sbjct: 1109 YHYFYDL--AEKVGTKYCLISPARFLFN--AGSTDKSWNQKMLNDEHLKVVYYNQKSDEV 1164

Query: 398  FFRTNIA--TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            F  T+I     +    N K  +       I    ++  + +   K   +      +I+  
Sbjct: 1165 FVGTDIKGGVAVLFRDNSKIFDP------IGIFTVFEELNSIIHKVEKLTARTIDEIV-- 1216

Query: 456  YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI---TWRKLSPLHQ 512
                         +   + Y              +    +A          +  + P   
Sbjct: 1217 ------------ANRGQYRYTDAIYEDYPEDMKQISDRRIASNAFQKLPHLFLDIKPEDG 1264

Query: 513  SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
              ++ I            + + ++ E     + K +  KA+
Sbjct: 1265 EEYVQIFGRFNSNRVYKWFKKRYMTEPNTFLKFKIILPKAN 1305


>gi|206890615|ref|YP_002248359.1| modification methylase TaqI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742553|gb|ACI21610.1| modification methylase TaqI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 469

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 95/300 (31%), Gaps = 46/300 (15%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  +V     L+      + K S     ++ +P CG   FL          
Sbjct: 38  KKDYGIFFTPEWLVDFMVNLI-----DIDKLSSKEDISILEPACGLAQFL------FGIK 86

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +H  +       G E+  E             +      D+S  I+             
Sbjct: 87  RNHSSLFERAKLIGIEINQEV------------INYLVSFDISSKIELIKEDYLLWEANT 134

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+G     +   ++ E +  +  +          G          K     
Sbjct: 135 SFDLIIGNPPYGIPSLSEHYTIKVEPEIKKKYKTLYETW---YGKYNVYGAFIEKSIKLL 191

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
              G+   ++ ++ +          ++R++L +N    AI+ L +D+F    +++  +  
Sbjct: 192 KAEGQLIFIVPATFMILDE----FKKLRKFLSQNGG-TAIIYLGSDVFKPEADVSCVILD 246

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
               K          +N  ++    RN+ K  +I ++ Q   I           +S+ LD
Sbjct: 247 FVKSKE--------FVNRVEILEYHRNKIKAVKINSNWQGEVIT------FETDYSKKLD 292


>gi|153815158|ref|ZP_01967826.1| hypothetical protein RUMTOR_01383 [Ruminococcus torques ATCC 27756]
 gi|145847726|gb|EDK24644.1| hypothetical protein RUMTOR_01383 [Ruminococcus torques ATCC 27756]
          Length = 286

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 11/153 (7%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +      + +I+  L     +   +    F TP  V  L   +  +   A+ KE   + 
Sbjct: 131 EENPEQDFLGSIFMEL-----NLGDKSNSQFFTPYHVCELMAKVTEEDVVAVVKEKGYI- 184

Query: 207 RTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            T+ D  CG G  L  A+N         +      ++   Q+++     +C   + +  +
Sbjct: 185 -TINDSCCGAGATLIAAINEARKQLEKVNLNFQNHVLVVAQDIDEIVALMCYIQLSLLGV 243

Query: 265 ESDPRRD--LSKNIQQGSTLSKDLFTGKRFHYC 295
            +  +     ++ +          FT   F   
Sbjct: 244 AAYIKVGDVFTQPMSTDDNGENYWFTMMYFSDV 276


>gi|301066055|ref|YP_003788078.1| adenine-specific DNA methylase [Lactobacillus casei str. Zhang]
 gi|300438462|gb|ADK18228.1| Adenine-specific DNA methylase [Lactobacillus casei str. Zhang]
          Length = 336

 Score = 46.7 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         +  P  ++ + D   GTG  L   MN +     H+     +  +G +
Sbjct: 104 MASLATFMVTVFAQHLPKKMQ-VADLAIGTGNLLFAVMNQL-----HNARQVAVKGYGID 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      +++L+ D     +           D    K     +S+ P G    
Sbjct: 158 NDETLLAVAGMSSTLQQLDVDLFHQDAL----------DNLLFKDIDVVVSDLPVGYY-- 205

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V++  K  E              S    + +   + +   GG    +    S +F
Sbjct: 206 ----PVDERAKQFE-------TAAAKGHSYAHHLLIEQSMRVLKPGG--LGLFYVPSQVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
                +G +    WL ++   + ++ LP D F        L +L     + +R K
Sbjct: 253 RSEEAAGLTA---WLAKSTYFQGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|152973689|ref|YP_001338729.1| hypothetical protein KPN_pKPN4p07120 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|294496764|ref|YP_003560457.1| hypothetical protein pKpQIL_p080 [Klebsiella pneumoniae]
 gi|150958471|gb|ABR80499.1| hypothetical protein KPN_pKPN4p07120 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339473|gb|ADE44027.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 277

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  I+  L              + TP  V  L   +L+       +     I T+ DP
Sbjct: 123 DFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARMLMPGVRDTIRRE--GIATVSDP 175

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPRR 270
            CG  G L      + +      I P +   G   +++P    +    + +  + ++   
Sbjct: 176 ACGAAGMLIAYAECLLEAD----INPSMHMFGSCIDIDPVAADMAFIQLSLLGIAAEVVT 231

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             +  +Q        ++    F   L++
Sbjct: 232 GNTLTMQYRRVRYTPVYYLNAFEKRLAD 259


>gi|57506000|ref|ZP_00371924.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195]
 gi|57015800|gb|EAL52590.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195]
          Length = 1969

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 68/233 (29%), Gaps = 56/233 (24%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L    +    +    ++    + + +P+CG+G FL            H          G
Sbjct: 201 DLIIDTIYQGLEQFGLKNTSFKKEILEPSCGSGNFL------------HRGDKSSYNFTG 248

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            ELE  +  +    +L              N +  +   ++    K+F   + NPPFG+ 
Sbjct: 249 VELEKHSAIIA--NLL------------HPNSKIINQSYENFAENKKFDAIIGNPPFGQD 294

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             KD +++                              A K        G  A V+ +  
Sbjct: 295 KVKDSNSLAHNQTLDNY--------------------FAIKSLENLKDKGILAFVMPTGF 334

Query: 365 LFNGRAGSGE--SEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSNR 413
           L N +    +     R   L        V LP  +F    T + T +  L   
Sbjct: 335 LDNNQDKHLDLIKSARGKFL------GAVRLPNSVFKENGTEVNTDIIFLQKE 381


>gi|227535492|ref|ZP_03965541.1| DNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186902|gb|EEI66969.1| DNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 342

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 34/235 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         +  P  ++ + D   GTG  L   MN +     H+     +  +G +
Sbjct: 110 MASLATFMVTVFAQHLPKKMQ-VADLAVGTGNLLFAVMNQL-----HNARQVAVKGYGID 163

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      +++L+ D     +           D    K     +S+ P G    
Sbjct: 164 NDETLLAVAGMSSTLQQLDVDLFHQDAL----------DNLLFKDIDVVVSDLPVGYY-- 211

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                +  E           G       S    + +   + +   GG    +    S +F
Sbjct: 212 -----LVDERAKQFETAAAKGH------SYAHHLLIEQSMRVLKPGG--LGLFYVPSQVF 258

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
                +G +    WL ++   + ++ LP D F        L +L     + +R K
Sbjct: 259 RSEEAAGLTA---WLAKSTYFQGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 310


>gi|301155806|emb|CBW15274.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 253

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ I    +      + +++  L         +    + TP  + H   A+ L    +L 
Sbjct: 71  FNIIVEALEHKTYDFLGSVFMSL-----DLGDQYKAQYFTPGHIAHFMAAVTLSDCHSLI 125

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K+   +  TL +PTCG+G  + +A N++ +          +    ++L+     +C   M
Sbjct: 126 KKRGFL--TLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTAALMCYIQM 181

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +  +  +     +   +    L     
Sbjct: 182 TLLHIPGEVIIGNTLKDEVNYHLYTPAH 209


>gi|119357112|ref|YP_911756.1| hypothetical protein Cpha266_1300 [Chlorobium phaeobacteroides DSM
           266]
 gi|119354461|gb|ABL65332.1| hypothetical protein Cpha266_1300 [Chlorobium phaeobacteroides DSM
           266]
          Length = 1282

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 97/358 (27%), Gaps = 55/358 (15%)

Query: 24  GDFKHTDFGKVILPFT----LLRRLECA--------LEPTRSAVREKYLAFGGSNIDLES 71
           G  K +++   +L        L  +E          + P R      Y       +  + 
Sbjct: 271 GQIKPSEYYHYLLRLIYRILFLMVIEERNLVYPQLPVAPKRDIYDTYYSLMRLRRLSEKR 330

Query: 72  FVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           ++    +  +  +  +   L    G              F  +A          +     
Sbjct: 331 YLADRRHHDHWLALMATFHLFEDGGPGGNLGIAPLAGDLFRADAIGPLNQCSLDNETLMQ 390

Query: 128 EKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRR--------------FGSEVSE 172
               L     +     I ++   +      ++YE L+                F      
Sbjct: 391 CLRSLSLYENQKSGQLIRVNYAALNVEEFGSVYEGLLEYEPVFLYDDNAIEFAFARGDQR 450

Query: 173 GA-EDFMTPRDVVHLATA-----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            A     TP D+V          L+ D       E+  +   + D +CG+G  L  A   
Sbjct: 451 AATGSHYTPDDLVQPLIKHSLDYLIADRLKTSNPEAALLSLRVADISCGSGHILLAAARR 510

Query: 227 VA------DCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLI-RRLESDPR 269
           +A        G     P               +G +L P    +C   + +   +   P 
Sbjct: 511 IATELAIVRTGEEQPSPSAFRSAIRDVIRNCIYGVDLNPLAVELCKVALWLEAHIPGQPL 570

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             L  +I+ G+ +       +     + +  F      DK+ V +  K  +  R   G
Sbjct: 571 NFLDHHIKCGNAIVGFAHREE-MQKGVPDEAFVTMSGDDKEVVAELRKRNKAERIRQG 627


>gi|188993950|ref|YP_001928202.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277]
 gi|188593630|dbj|BAG32605.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277]
          Length = 1828

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 87/266 (32%), Gaps = 50/266 (18%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
              S  +     F TP  VV            A  +E+  + + + DP+ G G F   + 
Sbjct: 94  YMQSLKNSVMTAFYTPAPVVREIA--------ASLREAGIVPQRILDPSAGMGEF-IRSF 144

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +A  G            G E +  T      G ++  L  + +  +    +       
Sbjct: 145 DGIAAEGH--------TTFGFEKDILT------GQMLSALHPEDKIRIRGFEE------I 184

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +   G  F    SN PFG     D    +      +          + +   +  + +  
Sbjct: 185 ESKLGGYFDVVSSNIPFG-----DVAVFDPVFSKTDEPARKVARMSLHNYFFIKGVDMLR 239

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
                   GG  A + S   +    A + E  +R WL+ +  + + V LP +LF     T
Sbjct: 240 -------EGGVLAFITSQGVM---NAPTNEP-VREWLMNHTRLISAVRLPNNLFSENAGT 288

Query: 402 NIATYLWILSN--RKTEERRGKVQLI 425
            + + L +L     KT     + + I
Sbjct: 289 EVGSDLIVLQKQSNKTSLTEEEKRFI 314


>gi|269836309|ref|YP_003318537.1| DNA methyltransferase [Sphaerobacter thermophilus DSM 20745]
 gi|269785572|gb|ACZ37715.1| DNA methyltransferase [Sphaerobacter thermophilus DSM 20745]
          Length = 1102

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 59/213 (27%), Gaps = 41/213 (19%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVH---LATALLLDPDDALFKESPGMIRTLYDPT 213
             YE  +  +  ++ +    + TP  VV         LL               T+ DP 
Sbjct: 311 YFYEDFLAVYDPKLRDERGVYYTPAQVVKAQVTLVDELLRTKLNRPLGFADPDVTVLDPA 370

Query: 214 CGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQELEPETHAVCVAGM--LIR 262
            GTG +L   + H  +                      +G EL    +AV    +   I 
Sbjct: 371 TGTGTYLLRVLQHGIERATAIYGPGAAGDIASQMARNLYGFELLVGPYAVAHLRLAQAIH 430

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY-----------------------CLSNP 299
                   D        +  S +  T     +                       C+ NP
Sbjct: 431 EFGGREPDDGVHIYLTDTLESPNEITTLPHSFYEKPLAEEHRRAREVKRTTPILVCIGNP 490

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           P+    E+++   +     G   RFG  + K +
Sbjct: 491 PY----EREESDSDDGKTGGRWIRFGDQVTKKA 519


>gi|300214269|gb|ADJ78685.1| Adenine-specific methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 339

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 111/347 (31%), Gaps = 45/347 (12%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRF 166
           D      E+    +    +E      K       +  + +   +       + + LI + 
Sbjct: 32  DALIETLENI-LDNNQVHVEDDKPDKKTVAKLKELYADSNIKNLEADEKRQVIQLLILKS 90

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE    A   MTP  +  + + L+    D+        + T+ D   GTG  LTD  N+
Sbjct: 91  YSEDKIQANHQMTPDSIGMIVSYLIELFADS------KKVLTITDICVGTGNLLTDIYNN 144

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +       K    +  +G + +    A+           S   +   +NI+     + + 
Sbjct: 145 L------DKQNKNIQAYGIDNDDTLLALA----------SISTQFQKQNIELYHQDAIEE 188

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +    + + P G     DK +      N             S    + +     +L
Sbjct: 189 LLIPKTDLVVGDLPVGYYPIDDKVSDYITKNND----------GHSYAHYVLIEKSIRQL 238

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
           +      G    ++         +     ++ +++ +   ++ ++ LPT+LF  + ++ +
Sbjct: 239 K----EDGIGIFIVPRGIFEVKDS----VKLLKYIQKVGYLQGLLNLPTELFNDKQSMKS 290

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            L +       ++  +V L +    +       K    I    ++ I
Sbjct: 291 ILVVQKKGNKAKQAEEVLLGDFPS-FKKQEEFKKFINEIVSWAKKNI 336


>gi|317153586|ref|YP_004121634.1| N-6 DNA methylase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943837|gb|ADU62888.1| N-6 DNA methylase [Desulfovibrio aespoeensis Aspo-2]
          Length = 587

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 18/208 (8%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               ++ +P+CG G FL  A   + + G+H          G E+ P+           RR
Sbjct: 56  DPKESVLEPSCGDGSFLEAASARLEELGTH-GPSRANQLCGVEIIPDEADKAR-----RR 109

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           L           ++     +     G+  F   + NPPF     + +   E         
Sbjct: 110 LRGGLGYRADDVVESSDFFAWWSRPGRSTFDVVIGNPPF----IRYQSFPEPHRSRAMSI 165

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               GL      ++ ++  +   L +    GGR A+VL +  L    A    +++R +L 
Sbjct: 166 MKQQGLLPNRMTNI-WVPFVVAALAVLKE-GGRMALVLPAELLQVSYA----AQLRSFLT 219

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +      I+A   +LFF       L  L
Sbjct: 220 DRFSRIDIIAC-NELFFEKAEQEVLLFL 246


>gi|325855560|ref|ZP_08171871.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
 gi|325483774|gb|EGC86734.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 2072

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            +R   DP+ G G F            +        +    E +  T  +  A   +   
Sbjct: 125 QVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLLTARITQA---LH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +D     Q+      +L    ++    SN PFG     D+   + E+        
Sbjct: 168 --PYGKDNIFVRQEPFEAIGELEEKDKYDLITSNIPFGDFMVYDRSYSKGENILKRESTR 225

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                           +   K       GG  A + S   L    +   E+ IRR+LL+N
Sbjct: 226 ------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DSPKNEA-IRRYLLQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
             + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 270 SRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|282859989|ref|ZP_06269073.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|282587195|gb|EFB92416.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
          Length = 2072

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            +R   DP+ G G F            +        +    E +  T  +  A   +   
Sbjct: 125 QVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLLTARITQA---LH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +D     Q+      +L    ++    SN PFG     D+   + E+        
Sbjct: 168 --PYGKDNIFVRQEPFEAIGELEEKDKYDLITSNIPFGDFMVYDRSYSKGENILKRESTR 225

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                           +   K       GG  A + S   L    +   E+ IRR+LL+N
Sbjct: 226 ------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DSPKNEA-IRRYLLQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
             + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 270 SRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|229495719|ref|ZP_04389447.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317293|gb|EEN83198.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 1828

 Score = 46.7 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 89/278 (32%), Gaps = 62/278 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               S  +     F TP  VV            A  +E+  + + + DP+ G G F   +
Sbjct: 93  SYMQSLKNSVMTAFYTPAPVVREIA--------ASLREAGIVPQRILDPSAGMGEF-IRS 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + +A  G            G E +  T      G ++  L  + +  +    +      
Sbjct: 144 FDGIAAEGH--------TTFGFEKDILT------GQMLSALHPEDKIRIRGFEE------ 183

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +   G  F    SN PFG     D    + +    ++ R          G  +      
Sbjct: 184 IESKLGGYFDVVSSNIPFGDVAVFDPVFSKTDEPARKIARMSLHNYFFVKGVDML----- 238

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                    GG  A + S   +    A + E  +R WL+ +  + + V LP +LF     
Sbjct: 239 -------REGGVLAFITSQGVM---NAPTNEP-VREWLMSHTRLVSAVRLPNNLFSENAG 287

Query: 401 TNIATYLWILSNR--------------KTEERRGKVQL 424
           T + + L +L  +              K+E+R   V  
Sbjct: 288 TEVGSDLIVLQKQSGKTSLTEEEQRFIKSEKRPSGVLF 325


>gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951547|gb|ABM10457.1| putative Helicase [Arthrobacter aurescens TC1]
          Length = 1605

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 86/303 (28%), Gaps = 44/303 (14%)

Query: 124  IARLEKAGLLYKICKNF-SGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDF 177
              R +         + F + + +  + + +     ++++ +YE   +      +E     
Sbjct: 792  KLRGKSLETETAALEKFYASVRMRAEGIDNAEGKQKIITELYEKFFKLAFPRAAESLGIV 851

Query: 178  MTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP +VV      + D   + F  S       + DP  GTG F+   +            
Sbjct: 852  YTPVEVVDFIIRSVDDVLRSEFGASLTDRGVHVLDPFTGTGTFIVRLLQSGLIRPEDLLY 911

Query: 237  PPILVPHGQELEPETHAVCVAGM--LIRRL-------------ESDPRRDLSKNIQQGST 281
                  H  E+    + +    +   +  L             +     D  +  +   T
Sbjct: 912  KYTNDLHANEILLLAYYIAAINIEATLHGLLTEQDPEAGYVPFDGIVLTDTFQMTEDDDT 971

Query: 282  LSKDLFT----------GKRFHYCLSNPPFGKKWEKDKDA--------VEKEHKNGELGR 323
            L   +F                  + NPP+        DA        ++   +     R
Sbjct: 972  LDNVIFPQNNERAAHQKALDIRVIVGNPPYSVGQGSQNDANANLKYPTLDASIERTYAAR 1031

Query: 324  FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                L +    S +  +  A+        GG  A V +   + +  A      +R+ L +
Sbjct: 1032 SRAALKRNLYDSYIRAIRWASNRLETSKHGGIVAYVSNGGYIDSNTADG----LRKTLAD 1087

Query: 384  NDL 386
               
Sbjct: 1088 EFH 1090


>gi|322387303|ref|ZP_08060913.1| adenine-specific methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141832|gb|EFX37327.1| adenine-specific methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 317

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 82/258 (31%), Gaps = 44/258 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ +        A    TP  + HL   ++        +  P    +L +   G G 
Sbjct: 70  YQFLLMKAAQTEPLQANHQFTPDAIGHLMIFII-------EQLFPAENVSLLELGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +            +   G EL+     +  +             DL     Q
Sbjct: 123 LGASFLTSM---------NKKVDYLGIELDDLLIDLAAS--------MAEVMDLKMGFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G   +    +                +   ++ +   
Sbjct: 166 GDAVRPQVLKES--DIIVSDLPVGYYPDDQIAS-------------RYQVAAKNEHTYAH 210

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            + +   L+     GG A  +  +  L + ++      ++ WL E   + AIVALP DLF
Sbjct: 211 HLLMEQSLKYLRT-GGYAIFLAPTDLLTSPQS----ELLKSWLTEQAQLVAIVALPEDLF 265

Query: 399 FRTNIATYLWILSNRKTE 416
            +   +  +++L  R  E
Sbjct: 266 AQGAQSKSIFVLQKRTGE 283


>gi|154253048|ref|YP_001413872.1| methylase [Parvibaculum lavamentivorans DS-1]
 gi|154156998|gb|ABS64215.1| methylase [Parvibaculum lavamentivorans DS-1]
          Length = 928

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 83/329 (25%), Gaps = 72/329 (21%)

Query: 26  FKHTDFGKVILPFTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           +   D  + ++        +     EP    +            DL S +          
Sbjct: 176 YDGHDLEQYLVRLLFCLFADDTGIFEPKDILLDFIQNRTSADGSDLGSRLNELFEVLNTP 235

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-KICKNFSG 142
            +    TL                       F   + +    RL                
Sbjct: 236 EDKRQKTLDED-----------------LGNFPYVNGALFAERLRTPAFNAAMRLILIEA 278

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            E   + +   +   +++ ++ +  +E       + T ++++ L   L LD     F  +
Sbjct: 279 CEFKWEAISPAIFGALFQSVMNK--TERRALGAHYTTEKNILKLIQPLFLDGLHEEFARA 336

Query: 203 PGMIR----------------TLYDPTCGTGGFLTDAMNHVA----------DCGSHHKI 236
             + R                T +DP CG G FL  A   +             G   +I
Sbjct: 337 KALKRGRQQALEALHEKLGQLTFFDPACGCGNFLVIAYRELRALEQEILRVLHDGKDQRI 396

Query: 237 PPIL--------VPHGQELEPETHAVC--VAGMLIRRLESDPRRDL-----------SKN 275
             +           +G E+      +      M+   + +                 S +
Sbjct: 397 FDVAQLSKVNVDQFYGIEIGEFPARIAEVAMWMMDHIMNNRLGLSFGSNYARIPLRTSPH 456

Query: 276 IQQGSTLSKDL---FTGKRFHYCLSNPPF 301
           I     L  D       ++  Y   NPPF
Sbjct: 457 ILHADALEADWAALLPPEKCSYVFGNPPF 485


>gi|15895576|ref|NP_348925.1| DNA modification methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|15025315|gb|AAK80265.1|AE007731_10 DNA modification methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|325509725|gb|ADZ21361.1| DNA modification methyltransferase [Clostridium acetobutylicum EA
           2018]
          Length = 581

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 44/321 (13%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF   I  +          +  + ++       D  ++  +      F S   E      
Sbjct: 4   DFFKKIDDIYNEIKKSGDIE--TKLKYINKFRKDLDVNYSFSEKYYNFVSMKKER-GVVY 60

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KI 236
           TP  + +      +  +D +          + DP CG G  +     ++ +    +  KI
Sbjct: 61  TPLKISNYIIDSTISEEDII----KNPFLKIVDPACGCGNIIIPCFIYLRNIYIKNLDKI 116

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--------- 287
             I     +E     H +    +    ++ +  + L+ ++   S      F         
Sbjct: 117 NNINKLELREENINYH-IIKNNLFGYDVDLNAIKVLTIDLFCESKCFSSNFLCKDFLLDE 175

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G ++   LSNPP+         ++ KE+ +  L    P     +D S  F       L+
Sbjct: 176 IGIKYDIFLSNPPY-----VGLKSINKEY-SAILKTMYPSYKDKADISYCFFEKSILCLK 229

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------T 401
           +     G+   + S   L    + SGE E+RR L+E   +  IV      F+        
Sbjct: 230 I----DGKLGFITSRYFL---ESQSGE-ELRRILVEKCSLYKIVD-----FYGIRPFKKA 276

Query: 402 NIATYLWILSNRKTEERRGKV 422
            I T +  L     + +  ++
Sbjct: 277 GIDTVMIFLERGIGDRKSIEI 297


>gi|258545501|ref|ZP_05705735.1| methylase [Cardiobacterium hominis ATCC 15826]
 gi|258519201|gb|EEV88060.1| methylase [Cardiobacterium hominis ATCC 15826]
          Length = 933

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 90/350 (25%), Gaps = 62/350 (17%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS 84
            +      + ++        +  L  T++   +       ++      V    Y   NT 
Sbjct: 183 AYDEHRLKQFLIRLLFCFFADDTLIFTKNQFEDYLEKHTRADGSDTGSVLNQIYRVLNTP 242

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           E       +   +         F+D      E+  F + +     A       K      
Sbjct: 243 ETRRPQGMNAELKAFPYVNGRLFADAP----EELYFDAALRDNLLACSRRDWAK------ 292

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK---- 200
                +   +  ++++ ++    SE       +    +++ +  +L +D   A F     
Sbjct: 293 -----ISPEIFGSLFQSVMDN--SERRASGAHYTEEANILKVINSLFMDGLRAEFAVACK 345

Query: 201 --------------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------ 234
                                   DP CG G FL  A   +                   
Sbjct: 346 TRGKGNRKKAIDDFHQKIASLRFLDPACGCGNFLVVAYRELRRLEDEIIGELYGENQLLD 405

Query: 235 ----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----- 285
               +   I   HG EL+     +    M +   + +          + +    D     
Sbjct: 406 IATMQRVHIGQFHGIELDEYPAQIAKVAMWLTDHQCNLATAARFGETRPTIPLADSAEII 465

Query: 286 -----LFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                     +  Y   NPPF G +W       + E    + G+FG    
Sbjct: 466 NANALTTEWPQADYIFGNPPFIGHQWRSTAQQADVEAVFPKNGKFGKMDY 515


>gi|163867783|ref|YP_001608987.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017434|emb|CAK00992.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1661

 Score = 46.7 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 11/220 (5%)

Query: 44  LECALEPTRSAVREKYLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
           L       R A    +     +  D    +  +++ G        +     G+   +NN 
Sbjct: 764 LSDEKGKARCAFDAFHKELKSNLNDSITQDEALEMLGQHLVTRPVFEALFEGNEFVQNN- 822

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                S S   + I  + D +       +    Y   K  +     P    + ++  +YE
Sbjct: 823 -----SISQAMERILAELDKTDIKQESLELQGFYNSVKFRASGITEPQARQNLII-KLYE 876

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGF 219
               +   + ++      TP +VV      + D   +   K       ++ DP  GTG F
Sbjct: 877 DFFSKAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTF 936

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           +T  +          +       H  E+    + +    +
Sbjct: 937 ITRLLQSDLIKTEDMEYKFRNDIHANEIVLLAYYIAAINI 976


>gi|325923272|ref|ZP_08184946.1| putative helicase [Xanthomonas gardneri ATCC 19865]
 gi|325546251|gb|EGD17431.1| putative helicase [Xanthomonas gardneri ATCC 19865]
          Length = 1417

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 63/459 (13%), Positives = 131/459 (28%), Gaps = 82/459 (17%)

Query: 57   EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
            ++  A    +  LE+      ++     + +     +       +  I       +A+F 
Sbjct: 747  DRIKALLEDDSQLEARKAFHDFAAELRDDLNDKVSDAEIIEMLAQHLITK--PVFEALFA 804

Query: 117  DFDFSST--IARLEKAGLLYKICKNF-----------SGIELHPDTVPDRVMSN-----I 158
            D+ FSS   ++R  +  L     +N            + ++L  + +   V        +
Sbjct: 805  DYSFSSHNPMSRAMQNVLDVLDAQNLQKEASTLRGFYASVKLRAEGIDSAVGKQKIVVEL 864

Query: 159  YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTG 217
            Y+   R    +++E      TP +VV      +       F ++       + DP  GTG
Sbjct: 865  YDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVDHLLRKEFGQTLGSPGVHILDPFTGTG 924

Query: 218  GF---LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL---ESDPR 269
             F   L  +     +  +H         H  EL    + +    +      +   +  P 
Sbjct: 925  TFITRLLQSGLIKPEELAHKYKHE---IHANELVLLAYYIAAINIEATYHGIAGGDYAPF 981

Query: 270  RDLSKNIQQGSTLSKDLFTGKRFH--------------YCLSNPPF--GKKWEKDKDAVE 313
              +           +DL                       + NPP+  G+K E D +   
Sbjct: 982  EGICLTDTFQMYEKEDLVDQLLVDNSRRRKRQKALDIRVIVGNPPYSVGQKSENDNNDNV 1041

Query: 314  KEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +     E  R          +S G     +             G    V ++  L    A
Sbjct: 1042 EYVALDERIRSTYAARSQATLSKGLYDSYIRAIRWASDRIGNAGVLGFVTNAGFLEANTA 1101

Query: 371  GSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKT 415
                  +R+ L E      +  L  +              +F   +     + +L     
Sbjct: 1102 DG----LRKCLAEEFSDIYVFHLRGNQRTSGETSRKEGGKIFGSGSRAPIAISLLVKNPH 1157

Query: 416  EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             ++ G++   +  D             +  +D+  +I D
Sbjct: 1158 AKQHGRIFFHDIGDY------------LSREDKLEKIAD 1184


>gi|168700018|ref|ZP_02732295.1| Type I restriction-modification system methyltransferase subunit
           [Gemmata obscuriglobus UQM 2246]
          Length = 876

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 52/288 (18%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E     +P  ++S +YE L   +    ++      TPR++   A  LL +  + +     
Sbjct: 148 EFDFAHIPVGLLSQVYEALCWEWTPREAKKTSQRYTPRNI---AVTLLNEMLEGITNIEA 204

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVPH---------------- 243
                + DP CG G FL  +   +        +  K P   V                  
Sbjct: 205 C---RILDPACGAGVFLVLSFRRLYLERWRAAADKKRPDTAVIREILEKQLVGLDISEAA 261

Query: 244 -----------GQELEPETH---AVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFT 288
                        EL+PE      +    +  R L +     +S + Q  GS  +     
Sbjct: 262 LKLAALSLYLTAVELDPEPQPPDKLKFKNLRGRVLHNVREDGVSTDSQALGSLGAHVGKN 321

Query: 289 -GKRFHYCLSNPPFGK----KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +F   +SNPP+        ++   A E   K          +   ++  + FL+   
Sbjct: 322 FDGKFDIVVSNPPWTSLDKNMGKRLAGAYESIIKRVGDDNSVEVVLPDNNPDLPFLLRSI 381

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
              +     GGR  + L +  L   ++    +  R  +     ++ I+
Sbjct: 382 EWCKP----GGRIGMALPARLLL--KSAKNPAAARAMIFRLLRVDGII 423


>gi|328949574|ref|YP_004366909.1| Eco57I restriction endonuclease [Marinithermus hydrothermalis DSM
           14884]
 gi|328449898|gb|AEB10799.1| Eco57I restriction endonuclease [Marinithermus hydrothermalis DSM
           14884]
          Length = 409

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 50/270 (18%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                     TP ++V    +L+  P              + +P C +  FL        
Sbjct: 2   RGRRSLGAVYTPDELVRFMLSLVRRPV--------TPDWRVLEPACASAPFLRAFAERYG 53

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                    P+    G EL+PE                  R       +           
Sbjct: 54  ---------PVAELVGVELDPE----------------GARGFAVPGARLVHADFLLWEP 88

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV--EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
            +RF   L NPP+G        A+   +E K     +F     +  +    F+ H  N L
Sbjct: 89  AERFDLILGNPPYGIIGVPGHYAMHALREAKRAYRAKFQTWYGRY-NVYGAFIEHAVNLL 147

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G    V+ +S +           +R +L  +  +E +  L    F    +   
Sbjct: 148 KPE----GELVYVVPASWMIL----EEFKRLREFLAAHGTLE-VHYL-GRAFPGVRVTAV 197

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +   +  +     G+++L +   LW   R+
Sbjct: 198 VLHFTKARP----GELRLWDGGRLWLERRD 223


>gi|319891854|ref|YP_004148729.1| hypothetical protein SPSINT_0564 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161550|gb|ADV05093.1| hypothetical phage protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 225

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D      +E+          +  +   TP+ +  L ++ +   D            T Y+
Sbjct: 48  DVTFDWFHEYFQDEHAD--RKKKKQDFTPKSISKLLSSFVSSEDG-----------TYYE 94

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLES 266
           P  GTGG L    +      S  +  P    +  +EL   T    +  MLIR +  
Sbjct: 95  PAAGTGGILIQKWDDDRMKHSPLEYMPSFYFYTAEELSDRTIPFLLFNMLIRGMNG 150


>gi|261879784|ref|ZP_06006211.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333544|gb|EFA44330.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 2069

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F            +             E +  
Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAFTETFAKRAGMVDA------------MEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   I        +      Q+      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---IH----PYGQGNIIVRQEPFEAIGELKDKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+            + +     +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKD-------VLKRESTRAIHNYFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            +    IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKE 305


>gi|258507989|ref|YP_003170740.1| adenine-specific DNA methylase [Lactobacillus rhamnosus GG]
 gi|257147916|emb|CAR86889.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus GG]
 gi|259649315|dbj|BAI41477.1| DNA methylase [Lactobacillus rhamnosus GG]
          Length = 337

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         ++ P  +  + D   G+G  L   MN +     H +    +  +G +
Sbjct: 104 MASLATFMATVFDQQQPSQL-KVADLAVGSGNLLFAVMNQL-----HKERDVTVKGYGVD 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      ++ L+ +     +           D    K     +S+ P G    
Sbjct: 158 NDEALLAVAGMSSSLQHLDVELFHQDAL----------DGLLFKDIDVVVSDLPVGYYPV 207

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            ++                              + +   +++   GG    +    S +F
Sbjct: 208 DERAKKFATAAKKGHS-------------YAHHLLIEQSMKVLKPGG--LGMFYVPSRVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424
                +G +    WL E    + ++ LP D F        L IL     + +R  +V L
Sbjct: 253 QSEEAAGLTA---WLAEKTYFQGLLNLPDDFFADKQAEKSLLILQKPSADVKRAKQVLL 308


>gi|116494532|ref|YP_806266.1| adenine-specific DNA methylase [Lactobacillus casei ATCC 334]
 gi|116104682|gb|ABJ69824.1| Adenine-specific DNA methylase [Lactobacillus casei ATCC 334]
          Length = 336

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 34/235 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         +  P  ++ + D   GTG  L   MN +     H+     +  +G +
Sbjct: 104 MASLATFMVTVFAQHLPKKMQ-VADLAVGTGNLLFGVMNQL-----HNARQVAVKGYGID 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      +++L+ D     +           D    K     +S+ P G    
Sbjct: 158 NDETLLAVAGMSSTLQQLDVDLFHQDAL----------DNLLFKDIDVVVSDLPVGYY-- 205

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V++  K  E          +   S    + +   + +   GG    +    S +F
Sbjct: 206 ----PVDERAKQFE-------TAAVKGHSYAHHLLIEQSMRVLKPGG--LGLFYVPSQVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +    +G +    WL ++   + ++ LP D F        L +L     + +R K
Sbjct: 253 SSEEAAGLTA---WLAKSTYFQGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|317011160|gb|ADU84907.1| hypothetical protein HPSA_04625 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 124/415 (29%), Gaps = 80/415 (19%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 957  EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1008

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1009 -------AHAPSDKNYRFIGTELDP--------------ISANISQFLYPNQVIQNTALE 1047

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   +  PP+G    K   + +KE  N  +  +  G                 
Sbjct: 1048 NHHFYQEYDAFVGIPPYGN--HKIYSSNDKELSNESVHNYFLGK-------------AIK 1092

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +          + R ++++N      + LP  +F  T   
Sbjct: 1093 ELK----DDGIGAFVVSSWFM-----DGKNPKTREYIVQNATFLGAIRLPNSVFKATGTE 1143

Query: 405  TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                +                K     GK+  I++ D  T    +  +        + +I
Sbjct: 1144 VSSDIVFFKKGVDEAIHQSFTKAMPYYGKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1201

Query: 453  LDIYVS---RENGKFSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLE 499
            ++   S    +  K  R    +D   FGY           + R    +  L++  L    
Sbjct: 1202 VNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYF 1261

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             +     L  L         +   +QIY Y       K    S        K  K
Sbjct: 1262 INHPENILGHLSLEKTRYSFEINGEQIYKYELQALENKSLDLSQALSQAIEKLPK 1316


>gi|163659873|ref|YP_001608496.1| helicase [Bartonella tribocorum CIP 105476]
 gi|161016942|emb|CAK00501.1| predicted helicase [Bartonella tribocorum CIP 105476]
          Length = 1597

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 112/401 (27%), Gaps = 55/401 (13%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++          +     G+   +NN      + S   +
Sbjct: 710  DAFHKELKNNLNSEIKQEEAIEMLAQHLVTRPVFEALFDGNEFVQNN------AISQAME 763

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             I  + D ++     ++    Y   +  +     P    + ++  +YE    +   + ++
Sbjct: 764  KILTELDKTNIEEESKELQEFYNSVRLRASGITSPLARQNLII-TLYESFFAKAFKKTTD 822

Query: 173  GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +V+      + D   +   K       ++ DP  GTG F+T  +       
Sbjct: 823  RLGIVYTPVEVIDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSDLIKP 882

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM------LIR---------RLESDPRRDLSKNI 276
               +       H  E+    + +    +      +++          L    R    KN+
Sbjct: 883  EDMEYKFRHDIHANEIVLLAYYIAAINIEATYHSIMKGEYIPFKHIGLTDTFRMLEEKNL 942

Query: 277  QQ----GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             Q     ++   +L           NPP+    + + D  +         R        S
Sbjct: 943  LQKLFKENSEYLELQKNLNIEVIFGNPPYSVGQKNENDNAKNTPYPILNNRIRETYIAQS 1002

Query: 333  DGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES------------ 375
              +         +             G    V  S  +                      
Sbjct: 1003 KATNVQALYDSYIRAIRWASDRIADAGIIGFVSGSGYIDKSTMDGLRKSLAKEFTSIYVL 1062

Query: 376  ----EIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWI 409
                +IR+ +L N   E       ++F     T IA  L+I
Sbjct: 1063 NLRGDIRKNMLSNGKAEE----GENVFGNGSMTGIAITLFI 1099


>gi|12229857|sp|P96188|MTX1_XANCR RecName: Full=Modification methylase XamI; Short=M.XamI; AltName:
           Full=Adenine-specific methyltransferase XamI
 gi|1688235|gb|AAD13686.1| XamI DNA methyltransferase [Xanthomonas campestris pv.
           amaranthicola]
          Length = 527

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 75/259 (28%), Gaps = 44/259 (16%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A    TP  +V              +  + G    + DP  G+G F+  A     D   
Sbjct: 72  RAGAVYTPAPIVRSMM---------TWLAAQGSPARIVDPGAGSGRFILAAGEAFPDA-- 120

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                        E++P    +  A +  R         +             L      
Sbjct: 121 --------QLVAVEMDPLAALMLRANLSARGWTDRATVMVK------DYREVKLPPCAGI 166

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPP+ +  +     + ++ K      F     K S  + L L        L   G
Sbjct: 167 TAFIGNPPYVRHHD-----IGEDWKAWYASNFAGYGIKASALAGLHLHFFLQTRLLAKAG 221

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL----PT-DLFFRTNIATYL 407
              A I  +     N  +      +RR LL+       +AL    PT + F  T     +
Sbjct: 222 DVGAFITSAEWMDVNYGS-----ALRRLLLDE---LGGIALHVLEPTVEAFPGTATTAAI 273

Query: 408 WILSNRKTEERRGKVQLIN 426
                 +T  R  +V+ I+
Sbjct: 274 ACFRVGETA-RPVRVRFID 291


>gi|330990113|ref|ZP_08314093.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
 gi|329762801|gb|EGG79265.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
          Length = 1696

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 68/240 (28%), Gaps = 58/240 (24%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP     L    L D    +          + +P CGTG F+              K+
Sbjct: 150 HYTP----ELMVRSLWDMVMRMG----FSGGRVLEPGCGTGLFI---------ATRPEKL 192

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +   G E +P T  +  A               ++ I+Q          G+R+   +
Sbjct: 193 EGRVAFTGIENDPLTARIARA------------LYPNQWIRQEDFTKT--LPGERYELAI 238

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPPF  +  +  D +              G  ++S        H   +       GG A
Sbjct: 239 GNPPFSSRTVRGADTI--------------GRLRLSLHD-----HFIARSVEALRPGGIA 279

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
             V S   L      +     R  +     +   V LP         T +   + +L  R
Sbjct: 280 VFVTSRHTLDRRDGTA-----RTHIAAMADLLGAVRLPQGAMKDEAGTEVVVDIVVLRRR 334


>gi|308229515|gb|ADO24169.1| M.AflII [Anabaena flos-aquae CCAP 1403/13F]
          Length = 521

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 89/283 (31%), Gaps = 55/283 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F + + +     +LL                 L +P  G G  L  A+           
Sbjct: 14  YFTSDQSLSSYMVSLL----------RLETNDKLLEPCAGEGHLLAAAL----------G 53

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GK 290
           I   +     EL PE           + L+    +  +  I++  T+           G 
Sbjct: 54  INKDISSVAYELHPEHA---------KSLKLKFSKFKNVEIRERDTIFCPDLDLCESFGH 104

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   L NPP+G   E +        +  EL R  PG   I +   +FL+     L    
Sbjct: 105 KFTKILGNPPYGGWQEYE--------RRTELKRKYPGFY-IKETYTIFLLRCLKLL---- 151

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYL 407
              GR   ++  + L+          IRR+LLE   IE++    + LF   +       +
Sbjct: 152 AEKGRLVFIIPDTFLYL----HSHITIRRYLLEKFTIESVDVFRSSLFPGISFGYAGLCI 207

Query: 408 WILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQR 449
             +   K +      V+ I +   +T   N       I     
Sbjct: 208 ISIRAEKPKSNHSFSVRYIKSLGDFTESPNIKSHGNNIIQKNI 250


>gi|284097800|ref|ZP_06385789.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830700|gb|EFC34821.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 720

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 18/122 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-----PGMIR 207
                +Y  L++      +     F T      L T L + PD  + K++       +  
Sbjct: 90  DHAGPLYHGLLQ-----TARYDGSFYTSTAAAVLLTELAMPPDWPVVKDNWADAERLINL 144

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DP CGTG  L  A   + +              G E +  T  + +   ++  L+ +
Sbjct: 145 RVCDPACGTGTLLMAAARTIEERHR--------AFCGDEADLPTLHLGLIENVLHGLDIN 196

Query: 268 PR 269
             
Sbjct: 197 RH 198


>gi|197294217|ref|YP_001798758.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|197294356|ref|YP_001798897.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|197294405|ref|YP_001798946.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
 gi|197294818|ref|YP_001799359.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853544|emb|CAM11404.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853683|emb|CAM11566.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853732|emb|CAM11655.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
 gi|171854145|emb|CAM12137.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 77/282 (27%), Gaps = 68/282 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  V      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPEISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER--------RGKVQLINATDLWTS 433
                + + I +    +          +     IN+++ +  
Sbjct: 183 NVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIP 224


>gi|168205250|ref|ZP_02631255.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
 gi|170663156|gb|EDT15839.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
          Length = 1679

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 46/225 (20%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           A+++     +          + +P+ GTG              S+  +       G E++
Sbjct: 191 AIIVKYMWKVLLRLGFEKGRILEPSIGTGNMF---------RYSNPDMYYNSKIIGIEMD 241

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             T  +              +     N +   T  KD    + F   +SN PFG     D
Sbjct: 242 ILTSQIA---------SQLLQSATIINSRYEETSLKD----ESFDLIISNIPFGDIKIFD 288

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K+  E  +       F   + K+ D                    G  A V S+  +   
Sbjct: 289 KEYPEFSNYYVHDYYFLKSIKKVRDK-------------------GIIAFVTSTGVMDKR 329

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                  EIR  + ++      + LP+  F  T + + +  L   
Sbjct: 330 N-----QEIRELISKDCDFLGAIRLPSGSFSDTKVVSDIIFLQKN 369


>gi|308185126|ref|YP_003929259.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308061046|gb|ADO02942.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 2834

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 127/404 (31%), Gaps = 73/404 (18%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 955  EFRRAYSSTRDAYYTP----KLVIDSIYQALDRLGFNNDNHPKEIFEPSLGTGKFI---- 1006

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1007 -------AHAPSDKNYRFRGTELDP--------------ISTNISQFLYPNQVIQNTALE 1045

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G    K     +KE  N  +  +  G                 
Sbjct: 1046 NHQFYQEYDAFVGNPPYGN--HKIYSFYDKELSNESVHNYFLGK-------------AIK 1090

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +      +   ++R  + +N      + LP  +F  T   
Sbjct: 1091 ELK----DDGIGAFVVSSWFM-----DAKNPKMREHIAKNATFLGAIRLPNSVFKATGAE 1141

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN----------DDQRRQILD 454
                I+  +K  E+        A   +  I N      +               + +I++
Sbjct: 1142 VTSDIVFFKKGVEKATNQSFTKAMPYYDKIINSLDDETLFALQNNRFDSFIPSDQLKIVN 1201

Query: 455  IYVS---RENGKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKL 507
               S    +  K  R    +D   FGYR         +   +DK G   +   + T  + 
Sbjct: 1202 AIASHFGFKQEKLQRWYEKIDTANFGYREQD---YKIIKGFIDKVGENNINLNEQTLNEY 1258

Query: 508  SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
               H    L  L     +       E   K  +++ E ++L + 
Sbjct: 1259 FTHHPENILGHLSLEKTRYSSEINGEQIYKYELQALEDESLDLS 1302


>gi|224586490|ref|YP_002640391.1| hypothetical protein BVAVS116_O0003 [Borrelia valaisiana VS116]
 gi|224497094|gb|ACN52728.1| hypothetical protein BVAVS116_O0003 [Borrelia valaisiana VS116]
          Length = 1065

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 17/172 (9%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK---NFSGIEL-HPDTVPDRVMS 156
            S I +     K I +D +F      LE    +         F+                
Sbjct: 275 FSLIQNIIKLIKDIHKDSEFDCLKWILESIISIVNNIDTELIFNEFSFTSNKENSKDPYL 334

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTLYDP 212
             YE  + ++ + + +    + TP  +V+        +L    +     +     T+ D 
Sbjct: 335 YFYEDFLAKYDANLRKAKGVYYTPSSIVNFIVSSLNEILKGEFNLDKGFANKDKVTVLDF 394

Query: 213 TCGTGGFLTDAMNHV---------ADCGSHHKIPPILVPHGQELEPETHAVC 255
             GTG FL + +  +              +  +  +   +G E     +AV 
Sbjct: 395 ATGTGTFLLEVIRTIILKEIPKESGRQKDYINLHILKNLYGFEYLMAPYAVA 446


>gi|90961409|ref|YP_535325.1| adenine-specific methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90820603|gb|ABD99242.1| Adenine-specific methyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 346

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 111/347 (31%), Gaps = 45/347 (12%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRF 166
           D      E+    +    +E      K       +  + +   +       + + LI + 
Sbjct: 32  DALIETLENI-LDNNQVHVEDDKPDKKTVAKLKELYADSNIKNLEADEKRQVIQLLILKS 90

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE    A   MTP  +  + + L+    D+        + T+ D   GTG  LTD  N+
Sbjct: 91  YSEDKIQANHQMTPDSIGMIVSYLIELFADS------KKVLTITDICVGTGNLLTDIYNN 144

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +       K    +  +G + +    A+           S   +   +NI+     + + 
Sbjct: 145 L------DKQNKNIQAYGIDNDDTLLALA----------SISTQFQKQNIELYHQDAIEE 188

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +    + + P G     DK +      N             S    + +     +L
Sbjct: 189 LLIPKTDLVVGDLPVGYYPIDDKVSDYITKNND----------GHSYAHYVLIEKSIRQL 238

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIAT 405
           +      G    ++         +     ++ +++ +   ++ ++ LPT+LF  + ++ +
Sbjct: 239 K----EDGIGIFIVPRGIFEVKDS----VKLLKYIQKVGYLQGLLNLPTELFNDKQSMKS 290

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            L +       ++  +V L +    +       K    I    ++ I
Sbjct: 291 ILVVQKKGNKAKQAEEVLLGDFPS-FKKQEEFKKFINEIVSWAKKNI 336


>gi|209886780|ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209874976|gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 1700

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 60/236 (25%), Gaps = 50/236 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             ++    A  +        + +P  GTG F         +         +    G EL+
Sbjct: 174 EFIVRSIWAALRRLGWRGGRVLEPGIGTGLFPALMPEEFRE---------VSYVTGVELD 224

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T  +                     I  G     +L   + F   + NPPF  +  + 
Sbjct: 225 PATARIARL------------LQPRARIITGDFARAELP--RSFDLAIGNPPFSDRTVRS 270

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             A                             +   +       G  A  V S   +   
Sbjct: 271 DRAYRSMGLRLHD-------------------YFIARAIDLLKPGALATFVTSHGTMDKA 311

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
            A +     R  + +   + A + LP   F     T++   L     RK  +  G 
Sbjct: 312 DAAA-----REHIAKTADLIAAIRLPEGSFRAVAGTDVVVDLLFFRKRKIGDPEGD 362


>gi|197294328|ref|YP_001798869.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853655|emb|CAM11534.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 77/282 (27%), Gaps = 68/282 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  V      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKTTIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPEISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER--------RGKVQLINATDLWTS 433
                + + I +    +          +     IN+++ +  
Sbjct: 183 NVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIP 224


>gi|319651847|ref|ZP_08005972.1| adenine-specific methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396499|gb|EFV77212.1| adenine-specific methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 327

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 76/239 (31%), Gaps = 43/239 (17%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
              MTP  V  L   L+        K        L DP  GTG  LT  MNH  D     
Sbjct: 93  NHQMTPDAVGMLMGYLV-------EKFIQEKSFRLLDPAVGTGNLLTTVMNHQKDKTVEA 145

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G E++     +         L+  P +  +++  +   +       +    
Sbjct: 146 --------TGIEIDDLLIKLAYIN---ANLQEHPIQFFNQDSLEPLFI-------EAADA 187

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +S+ P G  +  D  + E + K  E   +                    +       GG
Sbjct: 188 VVSDLPIG-YYPNDVRSAEYKLKADEGHSY-------------SHHLFIEQSMNHVKSGG 233

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
               ++ +    + +A     ++  ++ E   I+ +V LP  +F     A  ++IL  +
Sbjct: 234 YLFFIIPNGLFESEQAP----KLHEFIKETAYIQGLVQLPLTMFKNEKAAKSIFILQKK 288


>gi|311031320|ref|ZP_07709410.1| N-6 DNA methylase [Bacillus sp. m3-13]
          Length = 331

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 75/244 (30%), Gaps = 48/244 (19%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A   MTP  +      L+      L +       T+ DP  GTG  LT  +NH      
Sbjct: 91  QANHQMTPDAIAMFMGYLVGKYTSHLQQ------LTMLDPAIGTGNLLTAVLNH------ 138

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
             +    L   G +++     +                  +   Q  S  ++D  +    
Sbjct: 139 --QPNKKLEAFGVDVDDLLVKLAYNN-------------ANLQEQAISLFNQDGLSNLFI 183

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +     +S+ P G  +  D +         E G         S    LF+       +  
Sbjct: 184 EPVDVVVSDLPVG--YYPDDNNAANFKLKAEEG--------HSYAHYLFIEQGLRYTKP- 232

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GG    ++ +S      A    + I+    +   I+ ++ LP  +F     A  + +
Sbjct: 233 ---GGHLLFLVPNSMFEEEEAKKVNALIK----DEAYIQGMLQLPETMFQNKYHAKSILV 285

Query: 410 LSNR 413
           L  +
Sbjct: 286 LQKK 289


>gi|148656519|ref|YP_001276724.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1]
 gi|148568629|gb|ABQ90774.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1]
          Length = 792

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 88/284 (30%), Gaps = 72/284 (25%)

Query: 182 DVVHLATALLLDPDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNHVADC--------- 230
           D++ L   L  + + +   E    +   T+ DPTCG+G FL  A + +A           
Sbjct: 264 DLIRLMGDLCAEWETSRLNELDTALTSLTVLDPTCGSGAFLCAAFDLLAHLMRIVVERHT 323

Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL----ESDPRRDLSKNIQ 277
                    G   +       +G ++ PE   +C   + +R      + DP RDL  NI 
Sbjct: 324 AGSVVSVPVGQRLRAIIERTLYGVDVMPEAAEICRMSLWLRLAALVDDPDPLRDLRFNIH 383

Query: 278 QGSTLSKDLFTGK---------------------------RFHYCLSNPPFGKKWEKDKD 310
            G  L+  L                                F   + NPP+  +     D
Sbjct: 384 TGDALTGTLHRSDNAASIDTNYHQRSLHWSTAFPGVLERGGFDVVIGNPPYVVRSGLLSD 443

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAIVLSSSPLFNG 368
              +E++    G              L+ + +   L L    G  G    V S +     
Sbjct: 444 PALREYQTAVTGN-------------LYALVIERALHLLRPHGWLGMIVPVASVATDSMK 490

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
                 + +R+W          V  P  LF   ++   + I+  
Sbjct: 491 PLQRLYAPLRQW-----HSHYAVR-PGKLFPNVDMNLTITIIQK 528


>gi|257064108|ref|YP_003143780.1| predicted helicase [Slackia heliotrinireducens DSM 20476]
 gi|256791761|gb|ACV22431.1| predicted helicase [Slackia heliotrinireducens DSM 20476]
          Length = 1847

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 28/217 (12%)

Query: 145  LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA----LLLDPDDALFK 200
            +H D+   R++  +YE    +  ++ SE      TP  +V         LL       F 
Sbjct: 1083 IHTDSGRQRIIKELYEKFFSQAFTKTSEKMGIVYTPNQIVDFILRSTNALLHHEFGQTFA 1142

Query: 201  ESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
            +       + DP  GTG F+ + +N  A       +       H  E+    + +    +
Sbjct: 1143 DE---GVHILDPFTGTGTFIVNLLNDDALMPSDKIEYKYANELHCNEIMLLAYYIATINI 1199

Query: 260  --LIR-RLESDPR-------RDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNP 299
                  R+E D          D  +  ++G  L  ++FT                 + NP
Sbjct: 1200 EHAYHSRIEGDYIPFPGAVLTDTFQMTEEGDPLDLEVFTQNSKRVVEQNRLPVRVIIGNP 1259

Query: 300  PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            P+    +   D  +        GR      K S+  +
Sbjct: 1260 PYSIGQKNANDNNQNMKYKTLDGRISDTYAKQSEAGL 1296


>gi|221369899|ref|YP_002520995.1| hypothetical protein RSKD131_4062 [Rhodobacter sphaeroides KD131]
 gi|221162951|gb|ACM03922.1| Hypothetical Protein RSKD131_4062 [Rhodobacter sphaeroides KD131]
          Length = 1620

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 81/311 (26%), Gaps = 38/311 (12%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCG 215
             +Y+   RR     +E      TP ++V      + +     F ++       + DP  G
Sbjct: 861  ELYDKFFRRAFPRTTEKLGIVYTPVEIVDFIIHSVNEMLQEHFGQTLGSEGVHILDPFTG 920

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG--MLIRRLESDP----- 268
            TG F+T  +          +       H  E+    + +       +   +         
Sbjct: 921  TGTFITRLLQSGLIAPEEMERKFRHEIHANEIVLLAYYIAAINVEAVYHGIMGGDYVPFE 980

Query: 269  ------------RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                          DL  +    ++  +           + NPP+        D      
Sbjct: 981  GICLTDTFQMYESDDLISHYMPDNSERRKRQKASDIRVIVGNPPYSVGQATANDDNANVI 1040

Query: 317  KNGELGRFGPGL-PKISDGSMLFLM-HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
              G   R       + ++ +M  L       +    +  G A IV   +        + +
Sbjct: 1041 YPGLDARIRSTYAARSANTNMRSLYDSYIRAIRWASDRIGDAGIVAFVTNAGWVDGNAAD 1100

Query: 375  SEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERR 419
              +R  L E      +  L  +              +F   +     + +          
Sbjct: 1101 G-MRACLAEEFTDLYVFHLRGNQRTSGEKSRKEGGKIFGSGSRAPISISVFVKNPKATEI 1159

Query: 420  GKVQLINATDL 430
            G++   +  D 
Sbjct: 1160 GRIFFHDIGDY 1170


>gi|288802618|ref|ZP_06408056.1| DNA methylase [Prevotella melaninogenica D18]
 gi|288334768|gb|EFC73205.1| DNA methylase [Prevotella melaninogenica D18]
          Length = 2067

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F            +        +    E +  
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAF------------TETFAKSAGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEGKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|226950520|ref|YP_002805611.1| modification methylase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|226843643|gb|ACO86309.1| modification methylase family protein [Clostridium botulinum A2
           str. Kyoto]
          Length = 577

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 107/355 (30%), Gaps = 58/355 (16%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y   I+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYEFIK-----GIKETGVIYTPQEISNYMIENTINKEDV 80

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQELE 248
           +          + DP+CG G  L     ++ +            ++            L+
Sbjct: 81  IN----NPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWE 306
              +   +  + I+ L  D         +        L       F   + NPP+     
Sbjct: 137 NNLYGFDIDTIAIKILIIDLFYLTGYYNKNNFKKKDFLIEDINNNFDIYIGNPPYVGH-- 194

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +V+KE+      ++G       D S  F ++  N      N   +   + S   + 
Sbjct: 195 ---KSVDKEYSMLLKRKYGYVYKDKGDISYCFFINALNY----SNINSKITFITSRYFME 247

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTE---- 416
           +    +    +R++L EN  I  I+      F+         I   +  +    +     
Sbjct: 248 SKSGHN----LRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRNISNQVEI 298

Query: 417 ------ERRGKVQLINATDLWTSIRNEGKKRR----IINDDQRRQILDIYVSREN 461
                 E+       N  D +        + +    ++ DD  R I++   ++ N
Sbjct: 299 IKPCRYEKAKMGLFFNNEDKYEKFYVHMSELKQDGWVLIDDGSRDIINKIENKTN 353


>gi|300781907|ref|YP_003739142.1| hypothetical protein EbC_pEb10200850 [Erwinia billingiae Eb661]
 gi|299060173|emb|CAX53363.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 226

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L         +    F TP DV  +  ++ L   DAL +    +  TL +P
Sbjct: 84  DFLGSVFMEL-----ELGDKYRGQFFTPWDVSQMMASMQLSGIDALMQAQDFI--TLQEP 136

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G G  +       A  G  + +   L     +++P    +    + +  + ++     
Sbjct: 137 ASGAGCMVIAFAEEFAKRG--YTVSEQLWVSVTDVDPLAANMSYIQLSLCGIAAEVVTGH 194

Query: 273 SKNIQQGSTLSKDLF 287
           +  +++  TL   L 
Sbjct: 195 ALTLERRRTLYTPLH 209


>gi|163868246|ref|YP_001609455.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017902|emb|CAK01460.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1643

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 28/286 (9%)

Query: 45   ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              A     +  +E       S    ++   +A +        SL       ++N +   +
Sbjct: 763  SEAYRAFHAFHKELKNGLNDSIEQEDALEMLAQHLVTRPIFESLFDGNEFVSKNAISQAM 822

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                    +  +  +       LEK     K        E+        ++  +YE    
Sbjct: 823  EKI----LSELDKMNIKDEAKDLEKFYQSVKD----DTEEIIETRAKQNLIIKLYEDFFT 874

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP ++V      + D  +  F +S      ++ DP  GTG F+T  
Sbjct: 875  KAFKKTTDKLGIVYTPIEIVDFILHSVNDVLEQEFGQSLSSRGVSILDPFTGTGTFITRL 934

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR----LESDPRRDLS 273
            +          +          E+    + +    +      L++      E     D  
Sbjct: 935  LQSGLIKPEDMEYKFRNEIKANEIVLLAYYIAAINIESTYHSLMKGDYIPFEGICLTDTF 994

Query: 274  KNIQQGSTLSKDLFTGKR---------FHYCLSNPPFGKKWEKDKD 310
              +++    ++ +F                 + NPP+    +   D
Sbjct: 995  LMLEEKDFFTRYMFENSERCKKQQEADIQVIVGNPPYSVGQKNAND 1040


>gi|146280356|ref|YP_001170511.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145558597|gb|ABP73206.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 908

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 41/245 (16%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +P  ++SNIY+  ++   S          TP  +V L     L                
Sbjct: 260 DLPVELISNIYQLFVKDAASS-------IYTPPALVRLILEEAL--SWERLDTLMAGDGV 310

Query: 209 LYDPTCGTGGFLTDAMN----HVADCGSHHKIPP------ILVPHGQELEPETHAVCVAG 258
           + DP CG+G FL +A      H        +         +   HG ++E     +    
Sbjct: 311 ILDPACGSGVFLVEAYKRLVLHWRLHNGWARPGIADLRSLLQRVHGVDIEEGAIELAAFS 370

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF-------------HYCLSNPPFGKKW 305
           + +   ++    ++  ++Q    L+ +      F                + NPPF    
Sbjct: 371 LCLSLCDALQPEEIRASVQLFPALANETLHWSCFFEAKEQGLIKAPVAVLVGNPPF---- 426

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
              + A++ E       R+      ++D  + +L    +         G  A+V  +  L
Sbjct: 427 ---ESALKTEGAKRSYTRYSKDHGLLADTQLAYL--FLHDAMELLAPKGIVALVEPAGFL 481

Query: 366 FNGRA 370
           +N  +
Sbjct: 482 YNQNS 486


>gi|134287590|ref|YP_001109756.1| hypothetical protein Bcep1808_7092 [Burkholderia vietnamiensis G4]
 gi|134132240|gb|ABO59975.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 333

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 20/104 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  L        ++ A  F TP  V  L   + +   D            + +P
Sbjct: 114 DVLGETYMML-----DIGNDRAGQFFTPYCVSRLMAGISIG--DRCEAIEQEGFMRMQEP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            CG GG +                   L+  GQ  +   HA C+
Sbjct: 167 ACGAGGMVIATA-------------DALLSIGQNYQQTMHATCI 197


>gi|313126079|ref|YP_004036349.1| n-6 DNA methylase./eco57i restriction endonuclease [Halogeometricum
           borinquense DSM 11551]
 gi|312292444|gb|ADQ66904.1| N-6 DNA Methylase./Eco57I restriction endonuclease [Halogeometricum
           borinquense DSM 11551]
          Length = 1295

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 68/261 (26%), Gaps = 47/261 (18%)

Query: 38  FTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
                 L+    +   +  VR  +  +  SN +     K     F+             N
Sbjct: 235 LMFFYYLQKKGWIGERKDFVRWFHQQYEESNEEDVFHEKWLSALFFEGMNSPEGGEIEAN 294

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT------ 149
             +++E+ I         +F+  +   +   L  + L   I +                 
Sbjct: 295 LPSDVETAILGLPYMNGGLFQPTEEDESNTFLSDSALKSVIEEFLEQYNFTVTEESPYDI 354

Query: 150 ---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD----------- 195
              V   ++  IYE LI     +    A  F TPR  V L   + L              
Sbjct: 355 DVAVDPAMLGKIYESLI---AEQERGEAGIFYTPRVEVDLMCRMALYEQFCDHANDLDAE 411

Query: 196 ----------------------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                                 +    E+      + DP CG+G FL      V +    
Sbjct: 412 GKQRIVEFIFSEPQDWDAESNGETEQLENILHELRIVDPACGSGAFLVGMKQVVTELYRK 471

Query: 234 HKIPPILVPHGQELEPETHAV 254
               P      Q +    + V
Sbjct: 472 LGKTPDYHLKEQIINENLYGV 492


>gi|317476919|ref|ZP_07936162.1| type I restriction enzyme [Bacteroides eggerthii 1_2_48FAA]
 gi|316907094|gb|EFV28805.1| type I restriction enzyme [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +        +    F TP  +  L                    + + DPTCG+G  
Sbjct: 89  ELHMAYCSKPGQQANGQFFTPSHICELMV--------MCAAGKKETGQRMGDPTCGSGRL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           L     H           P     G+++      + V  ML+  
Sbjct: 141 LLAYHAH----------NPGNYLVGEDISRTCCMITVCNMLVHG 174


>gi|325832284|ref|ZP_08165283.1| methyltransferase domain protein [Eggerthella sp. HGA1]
 gi|325486120|gb|EGC88574.1| methyltransferase domain protein [Eggerthella sp. HGA1]
          Length = 2013

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 67/255 (26%), Gaps = 57/255 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F TP+++          P     +        + +P+CGTG F    
Sbjct: 510 GEYAAARASTLTAFYTPQEIAR--------PIWEAIRGMGLSGGRVLEPSCGTGAFFAAM 561

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A C             G EL+  T  +  A   +          +    +      
Sbjct: 562 PEALAGC----------RLVGVELDGLTARIARA---LH----PSAEIIHGGFEHADL-- 602

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   + N PFG                     +    P+  D  +L      
Sbjct: 603 ----DDESFDVAVGNVPFGS--------------------YQVDDPRHRDEGLLVHDWFF 638

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
            +       GG  A V S   L      +          E   +   V LP   F     
Sbjct: 639 ARALDLVRPGGIVAFVTSKGTLDKKNPAARRRI-----AERAELVGAVRLPNTAFSPHAE 693

Query: 403 IATYLWILSNRKTEE 417
           +   + IL  R+  E
Sbjct: 694 VTADVVILQKRERAE 708


>gi|317489197|ref|ZP_07947715.1| methyltransferase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911705|gb|EFV33296.1| methyltransferase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 2013

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 67/255 (26%), Gaps = 57/255 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F TP+++          P     +        + +P+CGTG F    
Sbjct: 510 GEYAAARASTLTAFYTPQEIAR--------PIWEAIRGMGLSGGRVLEPSCGTGAFFAAM 561

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A C             G EL+  T  +  A   +          +    +      
Sbjct: 562 PEALAGC----------RLVGVELDGLTARIARA---LH----PSAEIIHGGFEHADL-- 602

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   + N PFG                     +    P+  D  +L      
Sbjct: 603 ----DDESFDVAVGNVPFGS--------------------YQVDDPRHRDEGLLVHDWFF 638

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
            +       GG  A V S   L      +          E   +   V LP   F     
Sbjct: 639 ARALDLVRPGGIVAFVTSKGTLDKKNPAARRRI-----AERAELVGAVRLPNTAFSPHAE 693

Query: 403 IATYLWILSNRKTEE 417
           +   + IL  R+  E
Sbjct: 694 VTADVVILQKRERAE 708


>gi|168822802|ref|ZP_02834802.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340865|gb|EDZ27629.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320089261|emb|CBY99014.1| hypothetical protein SENTW_5581 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 277

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 13/150 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  I+  L              + TP  V  L   LL+       +     I T+ DP
Sbjct: 123 DFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARLLMPGIQDTIRRE--GIVTVSDP 175

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPRR 270
             G  G L      + +      I P     G   +++P    +    + +  + ++   
Sbjct: 176 ASGAAGMLIAYAECLLEAD----INPSWHMFGSCIDIDPVAADMAFIQLSLLGIAAEVVT 231

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +  +Q        ++    F   LS+  
Sbjct: 232 GNTLTMQFNRVRYTPVYYFNDFEKRLSDLN 261


>gi|327314381|ref|YP_004329818.1| helicase C-terminal domain-containing protein [Prevotella denticola
           F0289]
 gi|326946015|gb|AEA21900.1| helicase C-terminal domain protein [Prevotella denticola F0289]
          Length = 2093

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 48/232 (20%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK------IPPILVPHG 244
           +++            IR   DP+ G G F            +  K      I   + P+G
Sbjct: 111 IVNAIADALSSVDVPIRRCLDPSAGMGAFTETFAKKAGMVDAMEKDLLTARISQAIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R++  +   +                   ++    SN PFG  
Sbjct: 171 Q-----------GNIIVRQVPFEAIGEFE--------------DKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+          E  +         + +     +   K       GG  A + S   
Sbjct: 206 MVYDR----------EYSKGKGKDILKRESTRAIHNYFFVKGLDCIKEGGLMAFITSQGV 255

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           L    +   E+ IRR+L++N  + + + LP+ +F     T + + L +L  +
Sbjct: 256 L---DSPKNEA-IRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQ 303


>gi|154243836|ref|YP_001409409.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154162958|gb|ABS70173.1| helicase domain protein [Xanthobacter autotrophicus Py2]
          Length = 1697

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 65/260 (25%), Gaps = 58/260 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  +V            A           + +P  GTG F     
Sbjct: 157 DYASLARCTQYAHFTPEYIVRAI--------WAGLLRLGWRGGRVLEPGIGTGLFP---- 204

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                      +  +    G E++P T  +                     I  G     
Sbjct: 205 -----ALMPDNLRSVSHVTGIEIDPVTARIARL------------LQPRARIVTGDFARV 247

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL     F   + NPPF  +      AV  +     LG             +    +   
Sbjct: 248 DLPA--HFDLAIGNPPFSDR------AVRSDRAFRSLG-------------LRLHDYFIA 286

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       G  AA V S   +    A +     R  +     +   + LP   F     T
Sbjct: 287 KSINRLKPGALAAFVTSHGTMDKADATA-----REHIATMADLIGAIRLPEGSFRTDAGT 341

Query: 402 NIATYLWILSNRKTEERRGK 421
           ++   +     R+  E  G 
Sbjct: 342 DVVVDILFFRRRRDGEPEGD 361


>gi|83816871|ref|YP_446985.1| BseRI endonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83758265|gb|ABC46377.1| BseRI endonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 1068

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 25/231 (10%)

Query: 43  RLECALEPTRSAVREKY------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
             E   +     V  +       +A+G      E+F+     S            G  + 
Sbjct: 223 YFEEVRDDDHVTVAFEQWQRFLSIAYGSFEAREEAFLVHTYLSILAKLLAYEVLTGDDHI 282

Query: 97  RNNLESYI---ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVP 151
                  I     F+      F D DF   + R E    L  + +  +    +     V 
Sbjct: 283 DQEELEGILQGNIFAKYNVENFVDQDFYDWVGREEHFQHLQPVFRQLTSQIGQYDFSLVD 342

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           + ++  +Y+ LI     +      ++ TP          ++D  D           ++ D
Sbjct: 343 EDILKGVYQELID---IDTRHQLGEYYTP----DWLCERVVDELDIGGNS------SVLD 389

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLI 261
           P CG+G FL   +    D         IL    G ++ P +  +    +L+
Sbjct: 390 PACGSGSFLRAVIEKFKDEHPDLSARDILERVVGVDIHPLSVQIAKTTVLL 440


>gi|262042179|ref|ZP_06015352.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040501|gb|EEW41599.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 239

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  I+  L              + TP  V  L   +L+       +     I T+ DP
Sbjct: 85  DFLGAIFMEL-----DLGDNFRGQYFTPYSVQCLMARMLMPGVRDTIRRE--GIATVSDP 137

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPRR 270
            CG  G L      + +      I P +   G   +++P    +    + +  + ++   
Sbjct: 138 ACGAAGMLIAYAECLLEAD----INPSMHMFGSCIDIDPVAADMAFIQLSLLGIAAEVVT 193

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             +  +Q        +F    F   L++
Sbjct: 194 GNTLTMQIRRVRYTPVFYLNDFEKRLAD 221


>gi|240147298|ref|ZP_04745899.1| putative superfamily II DNA and RNA helicase [Roseburia
           intestinalis L1-82]
 gi|257200514|gb|EEU98798.1| putative superfamily II DNA and RNA helicase [Roseburia
           intestinalis L1-82]
          Length = 1438

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 58/208 (27%), Gaps = 51/208 (24%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + +P  G G F           G   +       +G EL+  T  +              
Sbjct: 185 VLEPAMGIGNFF----------GMLPEKMQESRLYGVELDGITGRIAK------------ 222

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            +   K   + +   K  +    F   + N PFG+                    +    
Sbjct: 223 -QLYPKVDIKITGFEKTDYPNDFFDVAIGNVPFGQ--------------------YKVAD 261

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            +    + L   +   K       GG  A V S   +          E+R++L +   + 
Sbjct: 262 KQYDKNNFLIHDYFFAKTLDKVRPGGVVAFVTSKGTMDKKSP-----EVRKYLAQRAELL 316

Query: 389 AIVALPTDLF---FRTNIATYLWILSNR 413
             V LP   F     T + + +  L  R
Sbjct: 317 GAVRLPNTAFKENAGTEVTSDILFLKKR 344


>gi|313888375|ref|ZP_07822043.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845572|gb|EFR32965.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 3466

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 128/429 (29%), Gaps = 90/429 (20%)

Query: 29   TDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK----VAGYSFYNTS 84
             D+    L   + +  E   +        + ++F   + + E  VK        +    S
Sbjct: 1598 NDYKN--LDLEVYKSSEKEKQSIDKGELVEQISFEDIDNNNEEEVKKDKKTDRENIEGVS 1655

Query: 85   EYSLSTLGSTNTRNNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            E SL      N   NL        +  A  + +  +  S  AR ++  +L K    + G+
Sbjct: 1656 EVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKESRSARKDEQEILAKYI-GWGGL 1714

Query: 144  ELHPDTVPD----RVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDAL 198
                D   +       + + E+L     +   E     F TP+ V+              
Sbjct: 1715 SDIFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE--------S 1766

Query: 199  FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-- 256
                      + +P+ GTG F+ +    + +             +G EL+  +  +    
Sbjct: 1767 LSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAKEL 1816

Query: 257  ---AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
               A + I+  E                  +  F+   F   + N PFG+          
Sbjct: 1817 YPNANIQIKGFE------------------ETSFSNNLFDVAIGNIPFGE---------- 1848

Query: 314  KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                      F     +    + L   +   K       GG  A + SS  +        
Sbjct: 1849 ----------FKVADREYERNNFLIHDYFFAKTLDKVRDGGIIAFITSSGTMDKKS---- 1894

Query: 374  ESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              ++RR++ E       + LP   F     T + + +  L        R ++  I+  + 
Sbjct: 1895 -EDVRRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKK------RDRLLKID--EE 1945

Query: 431  WTSIRNEGK 439
            W  +  + K
Sbjct: 1946 WIKLDKDAK 1954


>gi|296270692|ref|YP_003653324.1| putative type II DNA modification enzyme [Thermobispora bispora DSM
           43833]
 gi|296093479|gb|ADG89431.1| putative type II DNA modification enzyme [Thermobispora bispora DSM
           43833]
          Length = 1338

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 39/177 (22%)

Query: 144 ELHPDTVPDRVMSNIYEHLIR------------------RFGSEVSEGAEDFMTPRDVVH 185
           ++    +    + ++YE L+                   +      +    + TP  ++ 
Sbjct: 420 DVDFQHLGAEELGSVYESLLELEPYADTNGTGPRFKLREKVSGNDRKTTGSYYTPAPLIE 479

Query: 186 LATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCGS--------- 232
                 LDP      +S         T+ DP CG+G FL  A   +A   +         
Sbjct: 480 ALLDSALDPVIDEHAKSGNPDDLLKITVCDPACGSGHFLVAAARRIAKRYAAMVTGESEP 539

Query: 233 -------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                    +       +G ++ P    +    + I  LE   P   L  +I+ G++
Sbjct: 540 VPSAVREAMRKVVARCIYGVDINPLAAELAKVSLWIESLEPGKPLAFLDAHIKVGNS 596


>gi|327439226|dbj|BAK15591.1| adenine-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 313

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 37/206 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP  GTG  L   MN +            +   G E++     +  A         D
Sbjct: 103 SIVDPALGTGNLLFTVMNALEGK---------VTASGVEVDDLLIRLAAA-------TGD 146

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +      +Q +    +          + + P G  +  ++ A++ E    E       
Sbjct: 147 LIQQPVTLFRQDAL---EKLLVDPVDAVVCDLPVGF-YPNEEVALDYELCAAEGM----- 197

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                  S    + +   L     GG      L  + LF         ++ +++  +  I
Sbjct: 198 -------SYAHHLFIEQSLNYTKEGG--FGFFLIPANLFESDQA---KQLHQYIKGHAWI 245

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR 413
           +A++ LP +LF        + IL  +
Sbjct: 246 QAVIQLPENLFSSKTHEKSILILQKQ 271


>gi|325300601|ref|YP_004260518.1| helicase domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324320154|gb|ADY38045.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1671

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 76/240 (31%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          + D   A F+ +  ++++  +P+ G GGFL  +M            
Sbjct: 102 FYTP----KFLIEAVTDQIRATFQANGLLMKSFLEPSAGIGGFLPVSM------------ 145

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T      G+++  L+ D +  +        T+         F    
Sbjct: 146 -PDTYKVAFEKDLAT------GLVLSALQPDTKAVIGGFE----TIKAQELEYDTFDVIA 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG               + +  R G               +   K     N GG  
Sbjct: 195 SNIPFGT----------INVFDADFERRG---TPYKQSLKAIHNYFFIKAMELLNEGGLL 241

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A + S     +         +R +L+ +  I   + LP  LF +T    + + L IL   
Sbjct: 242 AFITSRGVADSPSN----RFVREYLVHHAHIITALRLPDTLFMQTGGIEVGSDLIILQKD 297


>gi|320007859|gb|ADW02709.1| hypothetical protein Sfla_1259 [Streptomyces flavogriseus ATCC
           33331]
          Length = 388

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 47/206 (22%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  F S       +F +PR V    +AL+             +  T+ DP CGTG FL  
Sbjct: 189 LTEFASRGRHR--EFSSPRVVASAVSALV----------EKHLAGTVLDPFCGTGSFLWA 236

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A++H A+ G   +        G E + +   +         +  D  R +   I++G + 
Sbjct: 237 ALDHAAEQGVAAE------FIGYEFDAQLAELAE------GIGRDAPRHV--VIEKGDSF 282

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            + L         ++ PP G         ++                  S+G +  L   
Sbjct: 283 QRGLADA---DVVVTAPPVGLSLADRHLLLDG--------------STTSEGYVAALDKC 325

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNG 368
              L+     GGRA +   S     G
Sbjct: 326 VRALKP----GGRAVLQYRSLVHLRG 347


>gi|266619952|ref|ZP_06112887.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479]
 gi|288868416|gb|EFD00715.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479]
          Length = 1013

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 69/228 (30%), Gaps = 63/228 (27%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  +  L  + L           P     + D TCG G F              +
Sbjct: 75  GQFFTPPPICDLVVSCL----------KPSASDLIADLTCGMGNFF-------------N 111

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +P     +G E++ + + V         L          NI+ G   + +  +  RF +
Sbjct: 112 FLPAESNAYGCEIDHKAYKVA------HYL------YPKANIELGDIRTYE--SDIRFDF 157

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  KW  +  +                        ML  ++   K        G
Sbjct: 158 VIGNPPFHLKWYLEDGS-----------------------EMLSQIYYCVKAAELLKPFG 194

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             A+++  S L +      +  + + +         VALP + F    
Sbjct: 195 IMALIVPQSFLAD---TFTDGRLIQAMENRYSFLGQVALPDNAFLSMG 239


>gi|332674294|gb|AEE71111.1| DNA methylase [Helicobacter pylori 83]
          Length = 2805

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 128/406 (31%), Gaps = 77/406 (18%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 960  EFRRAYSSTRDAYYTP----KLVIDSIYHGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 1011

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1012 -------AHAPSDKNYRFMGTELDP--------------ISANISKFLYPNQVIQNTALE 1050

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G    K   + +KE  N  +  +  G                 
Sbjct: 1051 NHQFYQEYDAFVGNPPYGN--HKIYSSNDKELSNESVHNYFLGK-------------AIK 1095

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +      S   ++R  + +N      + LP  +F  T   
Sbjct: 1096 ELK----DDGIGAFVVSSWFM-----DSKNPKMREHIAQNATFLGAIRLPNSVFKATGAE 1146

Query: 405  TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                +                K      K+  I++ D  T    +  +        + +I
Sbjct: 1147 VSSDIVFFKKGVDEATNQSFTKAMPYYDKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1204

Query: 453  LDIYVS---RENGKFSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWR 505
            ++   S    +  K  R    +D   FGY+         +   +DK G   +   + T  
Sbjct: 1205 VNAIASHFGFKQEKLQRWYEKIDTANFGYKEQD---YKIIKDFIDKVGENNINLNEQTLN 1261

Query: 506  KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            +    H    L  L     +       E   K  +++ E K+L + 
Sbjct: 1262 EYFIHHPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLDLS 1307


>gi|298674597|ref|YP_003726347.1| hypothetical protein Metev_0645 [Methanohalobium evestigatum
           Z-7303]
 gi|298287585|gb|ADI73551.1| conserved hypothetical protein [Methanohalobium evestigatum Z-7303]
          Length = 247

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 67/224 (29%), Gaps = 18/224 (8%)

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + F+K+     +    + +    +     ++ + +     N     ED           +
Sbjct: 42  KEFIKIFDGLCHAHHRWEVWQDWTEAAAISIHNSV-----NYDRELEDQYLKIVSKYERE 96

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
               +    + + + L  +      +  I+  L        ++    F TP ++   A  
Sbjct: 97  EMQQFPKLLSLATMALDTEFC--DFLGTIFMEL-----ELPNKFGGQFFTPYELSKFAAQ 149

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +     D+   E    +    +P  G G F+      + + G +      L    Q+ + 
Sbjct: 150 VTFSDYDSDTDE----VIEFNEPAVGAGSFVIAVCEMLHEKGVN--FQNRLKVTAQDSDY 203

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               +    + +    +      +  ++   T    ++  + F+
Sbjct: 204 MVFCMAYTQLSLIGCPAQLVHGNTLKLENKQTWYTPMWYLRGFN 247


>gi|317132847|ref|YP_004092161.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
 gi|315470826|gb|ADU27430.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
          Length = 2462

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 114/394 (28%), Gaps = 85/394 (21%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRR 263
            + +P CG G F           G   +       +G EL+  T  +       A +++  
Sbjct: 921  ILEPACGVGNFF----------GLLPESMAASRLYGVELDSITGRIAKQLYPNAKIIVAG 970

Query: 264  LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             E+  R+D                    F   + N PFG     D+              
Sbjct: 971  FETTDRKDF-------------------FDLAVGNVPFGSYKVSDRA------------- 998

Query: 324  FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            +      I D           K       GG  A V                E+RR++ +
Sbjct: 999  YNKLGFPIHDYFFA-------KTLDQVRPGGVIAFVT-----SRYTMDKQSPEVRRYIAQ 1046

Query: 384  NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI--RNEG 438
               +   + LP+D F     T + T +  L  R           I+    W  +    +G
Sbjct: 1047 RADLLGAIRLPSDAFKANAGTEVTTDILFLQKRDRP--------IDIEPDWVHLGQTEDG 1098

Query: 439  KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK--TGLA 496
                    D    +L               D +  G ++     P   + + ++    ++
Sbjct: 1099 IPVNSYFADHPEMVLGTIQW----------DDKMHGDKKETACEPFPDANLSEQLHEAVS 1148

Query: 497  RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
             L+  +   +L  L ++  +D   P    +  Y +     K       ++ ++ + +++ 
Sbjct: 1149 HLQGQMAEAELPDLGENEEIDDSIPADPNVKNYSYTVVDGKVY-YRENSRMVRPELNETA 1207

Query: 557  IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
                +     +D     ++    E+  D  +   
Sbjct: 1208 KARVMGMVELRDCVQKLISQQLDEYASDAEIRNT 1241


>gi|257466249|ref|ZP_05630560.1| helicase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 2324

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 120/436 (27%), Gaps = 77/436 (17%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D   +   E       + +P+ G G F+          G+          +G EL+
Sbjct: 1050 KIVIDGVYSTLSEMGFKNGNILEPSMGVGNFI----------GNLPDEMSKSKFYGVELD 1099

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +                   ++  Q     +  F+   F   + N PFG+     
Sbjct: 1100 SVSGRIAKL-------------LYPESDVQVKGFEETSFSNNFFDVAIGNVPFGE----- 1141

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                           F     + +  + L   +   K       GG  A + SS  +   
Sbjct: 1142 ---------------FKVNDREYNRNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM--- 1183

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKT--EERRGKVQ 423
                 +  IR+++         + LP D F     T + + +  L  R +  E     V 
Sbjct: 1184 --DKKDESIRKYINARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDSVLERDDDWVH 1241

Query: 424  -------------LINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                          ++  +  L +     G+  + +  +        ++ +EN   S   
Sbjct: 1242 LAEDENGLTYNKYFVDHPEQVLGSMREVSGRFGKTLTCEPI-----AFLGQENNMESLKD 1296

Query: 469  DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 G R  K  +   +  + D+        D+     + +    +       +++   
Sbjct: 1297 RIEIAGERISKDAKYEEIELLDDEVTSIPATDDVKNFSYTLIDDEVYYRENSLFIKREVS 1356

Query: 529  YGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                E        +   K +    K   S++ I    +                      
Sbjct: 1357 DKNKEKIKDYLELNEALKDVIYKQKEDFSEAEIKESQDKLNVVYDSFSKKHGFVNNLSNT 1416

Query: 585  TNLTEYENVPYLESIQ 600
              L E  N P + SI+
Sbjct: 1417 RALREDSNFPLVSSIE 1432


>gi|291557592|emb|CBL34709.1| DNA methylase [Eubacterium siraeum V10Sc8a]
          Length = 2082

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 50/220 (22%)

Query: 197  ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
               K        + DP+ GTG F     + +               +G EL+  +  +  
Sbjct: 1110 DGLKSIGFDGGNILDPSAGTGNFFGAMPSEMRKNSK---------LYGVELDSISARIAK 1160

Query: 257  AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                        +   S NI +G    K +     +   +SN PFG+             
Sbjct: 1161 ------------QLYQSANITEG-AYEKRVLNDNFYDAAISNVPFGQ------------- 1194

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                   F     +    ++    +   K       GG  A + +S  L    +     +
Sbjct: 1195 -------FKVHDKRYDSLNLNIHDYFFAKSLDKVRPGGVIAFITTSGTLDKSNS-----K 1242

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
             R+++ E   +   V LP   F     T + + +  L  R
Sbjct: 1243 FRKYMAERAELLGAVRLPNTAFKAVAGTEVTSDIIFLQKR 1282


>gi|315917407|ref|ZP_07913647.1| superfamily II DNA/RNA helicase [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313691282|gb|EFS28117.1| superfamily II DNA/RNA helicase [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 2332

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 120/436 (27%), Gaps = 77/436 (17%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D   +   E       + +P+ G G F+          G+          +G EL+
Sbjct: 1058 KIVIDGVYSTLSEMGFKNGNILEPSMGVGNFI----------GNLPDEMSKSKFYGVELD 1107

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +                   ++  Q     +  F+   F   + N PFG+     
Sbjct: 1108 SVSGRIAKL-------------LYPESDVQVKGFEETSFSNNFFDVAIGNVPFGE----- 1149

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                           F     + +  + L   +   K       GG  A + SS  +   
Sbjct: 1150 ---------------FKVNDREYNRNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM--- 1191

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKT--EERRGKVQ 423
                 +  IR+++         + LP D F     T + + +  L  R +  E     V 
Sbjct: 1192 --DKKDESIRKYINARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDSVLERDDDWVH 1249

Query: 424  -------------LINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                          ++  +  L +     G+  + +  +        ++ +EN   S   
Sbjct: 1250 LAEDENGLTYNKYFVDHPEQVLGSMREVSGRFGKTLTCEPI-----AFLGQENNMESLKD 1304

Query: 469  DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 G R  K  +   +  + D+        D+     + +    +       +++   
Sbjct: 1305 RIEIAGERISKDAKYEEIELLDDEVTSIPATDDVKNFSYTLIDDEVYYRENSLFIKREVS 1364

Query: 529  YGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                E        +   K +    K   S++ I    +                      
Sbjct: 1365 DKNKEKIKDYLELNEALKDVIYKQKEDFSEAEIKESQDKLNVVYDSFSKKHGFVNNLSNT 1424

Query: 585  TNLTEYENVPYLESIQ 600
              L E  N P + SI+
Sbjct: 1425 RALREDSNFPLVSSIE 1440


>gi|126668538|ref|ZP_01739493.1| helicase domain protein [Marinobacter sp. ELB17]
 gi|126627049|gb|EAZ97691.1| helicase domain protein [Marinobacter sp. ELB17]
          Length = 1658

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 57/457 (12%), Positives = 127/457 (27%), Gaps = 75/457 (16%)

Query: 43   RLECALEPTRSAVR-EKYLAFGGSNIDL-------ESFVKVAGYSFYNTSEYSLSTLGST 94
            R+   LE     V    + AF     D        +  +++          +     G  
Sbjct: 748  RIRAILEDENHTVEIAAFNAFAAELRDDLNKAVTDDEIIEMLAQHLITKPVFDALFEGYN 807

Query: 95   NTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             T +N  S  + + ++  K    D +  +  +  E   +  +  +              R
Sbjct: 808  FTEHNPMSLAMQALTEQLKGHNIDKEADTLRSFYESVKMRAQGVE--------SAEGKQR 859

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDP 212
            ++  +Y+   +     +++      TP +VV      + D   + F  S       + D 
Sbjct: 860  IIVELYDKFFKNAFPRMTDRLGIVYTPIEVVDFILHSVEDVMRSEFNSSLAEPNVHILDG 919

Query: 213  TCGTGGF---LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-------LIR 262
              GTG F   L  +     D  +H         H  E+    + +    +       +  
Sbjct: 920  FTGTGTFPVRLLQSGIIPKDKLAHKYKHE---IHANEIVLLAYYIAAINIEATYHGIMNN 976

Query: 263  RLESDP--------------------------RRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +  D                             D+   + + ++  +           +
Sbjct: 977  NVAGDEYTDQIFEVPYEPFTGICLTDTFQMYESEDMIDELLEENSSRRKHQKNLDIRVIV 1036

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH--LANKLELPPNGGG 354
             NPP+      + DA +    +    R G      S+ ++   ++      +    +  G
Sbjct: 1037 GNPPYSAGQTSENDANQNVKYSNLDERIGSTYAHYSNATLQKNLYDSYIRAIRWASDRVG 1096

Query: 355  RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-F 399
               +V   +        S +  +RR L+E      +  L  +              +F  
Sbjct: 1097 EQGVVAYVTNASFLDGNSMDG-LRRCLVEEFSSLYLFHLRGNQRTSGERSRKEGGKIFGS 1155

Query: 400  RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
             +     + IL         GK+   +  D  +  + 
Sbjct: 1156 GSRAPIAISILVKNPQSSEHGKIYFHDIGDYLSREKK 1192


>gi|317056964|ref|YP_004105431.1| N-6 DNA methylase [Ruminococcus albus 7]
 gi|315449233|gb|ADU22797.1| N-6 DNA methylase [Ruminococcus albus 7]
          Length = 1070

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 41/275 (14%)

Query: 40  LLR-RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY-------NTSEYSLSTL 91
             R  +    E T +A+ EK           ++F+   G S Y         SE+ L T+
Sbjct: 198 FYRSFIGAFSEATNTAMAEKPDYAELIKQVWQNFIAYLGVSDYGSFSTETYVSEFYLVTV 257

Query: 92  GS---TNT---------RNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
                 N           + +++ +    FS      F D+D+   + R     ++    
Sbjct: 258 AKILCANILAGRAIISSDDEIKAILNGEHFSRQNIYNFVDYDYFGWLNRSPYVDIIIPSV 317

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDD 196
           +      L           +I+  L+ +  ++          TP  +      ++    +
Sbjct: 318 REMQN-RLKAYDFSRLGDEDIFGRLLAQLANKEHRLMLGQEFTPHWIAR---DIVKYNIN 373

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPILV--PHGQELE 248
            +  E P     + D  CG+G FL +++N V +  S        K   I+     G +++
Sbjct: 374 KIGDEVPH----IMDMCCGSGVFLIESINAVREKYSISSDKYDAKKDAIIFSAVMGFDID 429

Query: 249 PETHAVCVAG--MLIRRLESDPRRDLSKNIQQGST 281
           P    +      M +R L       ++  I    +
Sbjct: 430 PLAVMLAKVNWIMTMRDLFPLHSGSITVPIYHADS 464


>gi|325297578|ref|YP_004257495.1| helicase domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317131|gb|ADY35022.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1657

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 76/240 (31%), Gaps = 47/240 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          +       F+E+   +R+  +P+ G GGFL  AM      G  H  
Sbjct: 99  FYTP----DFLIEAVAGQIHTTFRENGLQMRSFLEPSAGIGGFLPVAM------GGTHS- 147

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +  E +  T  V     L+    +          +Q           ++F    
Sbjct: 148 ------YAIEKDIITGLVLS---LLHDEATTVTGGFEAIDRQ-------ELEHRKFDVIA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SN PFG              +  +   +  G         +        +EL  N GG  
Sbjct: 192 SNIPFG------------NFRVFDTEFWKKGGIYEQATKTIHNYFFVKAMELL-NEGGLL 238

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNR 413
           A V S           G   +R +L+ +  + + V LP  LF +T+   + + L I    
Sbjct: 239 AFVTSRGV----ADTPGSKFVREYLVSHADLISAVRLPDTLFMQTSGIEVGSDLLIFQKH 294


>gi|262371269|ref|ZP_06064588.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313743|gb|EEY94791.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 241

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +    +P  V+ ++Y           S       TP  + +L   +       L K+   
Sbjct: 97  MEARALPHDVLGDLYMRF-----EFGSSHNGQHFTPTHISNLLAVMNSGQIPELIKQKGY 151

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           +  +  DP CG G  L   +  V D G +      L   G +++     +C
Sbjct: 152 V--SCVDPACGAGSTLLAKVKCVIDGGFN--PAKHLYMEGTDIDRLVALMC 198


>gi|18071214|ref|NP_542283.1| putative DNA methylase [Sinorhizobium phage PBC5]
 gi|17940320|gb|AAL49564.1|AF448724_1 putative DNA methylase [Sinorhizobium phage PBC5]
          Length = 2849

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 75/259 (28%), Gaps = 56/259 (21%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  S       T  ++V  A          + +        + +P+ G G FL    
Sbjct: 41  EYASAESSTRNAHYTSAEIVKAA--------WDIARRLGFKGGQVLEPSVGAGNFL---- 88

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     ++       G EL+  T  +    +               NIQ      K
Sbjct: 89  -----GLMPGELRDGARITGVELDRVTGGIAK-NLY-----------PGANIQTPVGFEK 131

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + NPPFG +   DK        +     F   +                
Sbjct: 132 LTLPDNYFDLAIGNPPFGSERLYDKQRRHLNKLSIHNFFFAKSIET-------------- 177

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
                   GG  A+V+++  L     GS E+  R  + +   +   + LP + F     T
Sbjct: 178 -----LRPGGVLAMVVTNRFL----DGSNEAA-REQIAKTADLVGAIRLPNNAFLKNAGT 227

Query: 402 NIATYLWILSNRKTEERRG 420
            + T + IL  R   ++  
Sbjct: 228 EVTTDIVILRKRLEGDKPD 246


>gi|282895624|ref|ZP_06303749.1| Putative Adenine specific DNA methyltransferase [Raphidiopsis
           brookii D9]
 gi|281199318|gb|EFA74183.1| Putative Adenine specific DNA methyltransferase [Raphidiopsis
           brookii D9]
          Length = 1010

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 22/178 (12%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFK 200
           +       + ++   YE  +  +  ++ E    + TP  VV        +L+        
Sbjct: 263 DFDMKMNREDIVIRFYEDFLATYKPQMRERRGVYYTPEPVVSYMVRSVDILVKEKFNKPL 322

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSHHKIPPILVPH 243
                  T+ DP CGTG FL      +                      + K   +    
Sbjct: 323 GLADPTVTILDPACGTGTFLLYIFQLIYQRFQESPAALTEGLVDKSWSGYVKERLLPRIF 382

Query: 244 GQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           G EL    +A+C    G+ +         +    I   +TL       +     L+ P
Sbjct: 383 GFELLMSPYAICHLKLGLFLEETGYQFDNNQRLGIYLINTLEDIKLREETQQLSLNIP 440


>gi|240851279|ref|YP_002972682.1| helicase/methyltransferase [Bartonella grahamii as4aup]
 gi|240268402|gb|ACS51990.1| helicase/methyltransferase [Bartonella grahamii as4aup]
          Length = 1652

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 109/415 (26%), Gaps = 68/415 (16%)

Query: 40   LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
              R +    +    AV E               +++          + +   G   TR N
Sbjct: 757  FDRFVAELRDDLNDAVTE------------ADAIEMLAQHIITRPVFQVLFEGYQFTREN 804

Query: 100  LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                    S   + + +  D ++     +     Y   K  +     P      ++  +Y
Sbjct: 805  ------PVSRAMQRMLDVLDEANLDKESKDLEKFYASVKLRASGITDPKAKQRLIV-ELY 857

Query: 160  EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGG 218
            +   R       E      TP +VV      + D  +  F ++       + DP  GTG 
Sbjct: 858  DKFFRYAFPRTVEKLGIVYTPVEVVDFILHSVNDVLEQEFGQTLGSSGVHIMDPFTGTGT 917

Query: 219  FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG--MLIRRLES---------- 266
            F+T  +          K       H  E+    + +      M    L            
Sbjct: 918  FITRLLQSGLIKPEEMKHKFCHEIHANEIVLLAYYIAAINIEMTYHGLMGGDYVPFEGIC 977

Query: 267  --------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEH 316
                    +  +DL  ++   ++  +           + NPP+  G+K E D        
Sbjct: 978  LTDTFQLYEQEKDLISDLLVDNSTRRSRQKELDIRVIVGNPPYSSGQKSENDNAQNIGYP 1037

Query: 317  KNGELGRFGPGLPKIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSS-----PLFNG 368
            K     R        +   +G     +             G    V  S       +   
Sbjct: 1038 KLDRRIRETYAAQSKASNVNGLYDSYIRAIRWASDRIKDCGVIGFVTGSGYVEKLAMDGL 1097

Query: 369  RAGSGE-----------SEIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWI 409
            R    E            +IR+ +L             ++F     T IA  L+I
Sbjct: 1098 RKNLNEEFSSIYVFNLRGDIRKNMLSK----GCAQEGQNVFGSGSMTGIAVTLFI 1148


>gi|307566488|ref|ZP_07628919.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307344799|gb|EFN90205.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 1507

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F            +        +    E +  
Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAF------------TETFAKRTGMVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   I        +      Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TTRISQA---IH----PYGKGNIIVRQEPFEAIGELEEKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|229827047|ref|ZP_04453116.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
           49176]
 gi|229788665|gb|EEP24779.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
           49176]
          Length = 2218

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 69/253 (27%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ V+     +L                 + +P+ G G F+          G+    
Sbjct: 563 FYTPKPVIDGMYKILSGMGLRKGN--------VLEPSMGIGNFI----------GNLPNE 604

Query: 237 PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +  +G E +  +  +       + + I+  E                     F+   
Sbjct: 605 MQGVKFYGVEQDSISGRIAKLLYPESNIQIKGFEETT------------------FSNNF 646

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + N PFG     D+D            R           + L   +   K      
Sbjct: 647 FDASIGNVPFGDFKLNDRD----------YDRN----------NFLIHDYFFAKSIDKVR 686

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
            GG  A + SS  +        +  +R+++         + LP + F     T + + + 
Sbjct: 687 NGGIIAFITSSGTM-----DKKDESVRKYIAARAEFLGAIRLPNNTFKGMAGTEVTSDII 741

Query: 409 ILSNRKTEERRGK 421
               R +   R +
Sbjct: 742 FFKKRDSVMERDE 754


>gi|152983386|ref|YP_001354718.1| hypothetical protein mma_3028 [Janthinobacterium sp. Marseille]
 gi|151283463|gb|ABR91873.1| Hypothetical protein mma_3028 [Janthinobacterium sp. Marseille]
          Length = 403

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 48/262 (18%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  +  +  A  F TP  +  +  + L              ++++ D   G G      
Sbjct: 4   SKDSARGNPDAGQFATPDWIADILCSRLSSG-----------LKSVADLGVGKGALSLAL 52

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V DC        +L    QE            M  + +    +         G    
Sbjct: 53  RNRVLDCSIVGIDKHLLPDGDQET-----------MQAQGIHLITKDI-------GRPKF 94

Query: 284 KDLFTGK--RFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            D F  +       +SNPPF         D+V  ++  G  G         +    L L+
Sbjct: 95  SDWFLKQYGAVSTVISNPPFINVLNSPLIDSVLAKNSLGNRG---------AKVQRLDLI 145

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            LA+ +++     G  A +L  S      +        + ++ N  +  I+ALP++ +  
Sbjct: 146 FLAHAMKMITQQ-GEIAFILPRSAFATASS----RTWLQSMIHNFGLAEIIALPSNAYHE 200

Query: 401 TNIATYLWILSNRKTEERRGKV 422
             + T + I   R    R GK+
Sbjct: 201 AEVETAILIF--RPGMRRAGKI 220


>gi|313669163|ref|YP_004049447.1| hypothetical protein NLA_18890 [Neisseria lactamica ST-640]
 gi|313006625|emb|CBN88091.1| hypothetical protein NLA_18890 [Neisseria lactamica 020-06]
          Length = 954

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 51/256 (19%)

Query: 111 AKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            +  F   +   FS  I        + +       I+     +   +   ++++++    
Sbjct: 278 FRLKFPYINGKLFSDGIDEFVFNASMRRTLLECCEIDWSL--ISPDIFGTLFQNIMENAD 335

Query: 168 SEVSEGAEDF-----------------MTPRDVVHLATAL---LLDPDDALFKESPGMIR 207
           +                          + P  +  L   L     DP       +     
Sbjct: 336 ALGGGKKSAHRRELGAHYTSEKNIKRAIAPLFLDRLKAELEQAAGDPKKLARYITRLQTL 395

Query: 208 TLYDPTCGTGGFLTDAMNHVA--------------DCGSHHKIPPILVPHGQELEPETHA 253
            + DP CG G FL  A   +                         +   HG E++P    
Sbjct: 396 QILDPACGCGNFLIVAYREIRLLEMQAIRQLARIPGAQQMQSQCDVHQFHGIEIDPAAVE 455

Query: 254 VCVAGMLI-----RRLESDPRRDLSKNIQQG-------STLSKDLFTGKRFHYCLSNPPF 301
           +    M +      RL  D  + +    +          T   D  + +   Y + NPPF
Sbjct: 456 IATVAMWLTDHQMNRLYQDGYKRIPLAHKADIRCANALQTDWADTISPQNLDYIVGNPPF 515

Query: 302 GKKWEKDKDAVEKEHK 317
             K E++ +  +   K
Sbjct: 516 LGKKEQNAEQKKDMEK 531


>gi|297161974|gb|ADI11686.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 20/180 (11%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L        +        + DP CG G  L +A+ H+                G E 
Sbjct: 32  AKMLPAIAAHAIRTYTQPGDLVLDPMCGIGTTLVEAV-HLGRHA-----------FGTEY 79

Query: 248 EPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           EP+   +    + +  R  +  +  ++    +                 +++PP+G    
Sbjct: 80  EPKWANMARTNLALAARQGATGKAAVTCTDARHLLTHIPPERHGTAALVITSPPYGPSVH 139

Query: 307 KDKDAVEKEHKNG------ELGRFGPGLPKISDGSMLF-LMHLANKLELPPNGGGRAAIV 359
               +  +  + G         R    L  ++   +L    H+  +       GG A + 
Sbjct: 140 GQVRSTRETGERGVVKNHYRYSRDPHNLAHVATDQLLDAFTHILTQCRTMLRPGGTAVVT 199


>gi|229105266|ref|ZP_04235915.1| hypothetical protein bcere0019_44000 [Bacillus cereus Rock3-28]
 gi|228678192|gb|EEL32420.1| hypothetical protein bcere0019_44000 [Bacillus cereus Rock3-28]
          Length = 324

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 59  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGKTEI--- 114

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 115 ---TVLDPAIGTGNLMTTVFNSAKEELA-------MSGFGVEVDEVLIKLALVNANLQKH 164

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 165 GIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEISASEYKLKADEGM 211

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 212 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 254

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 255 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 285


>gi|189462451|ref|ZP_03011236.1| hypothetical protein BACCOP_03139 [Bacteroides coprocola DSM 17136]
 gi|189430612|gb|EDU99596.1| hypothetical protein BACCOP_03139 [Bacteroides coprocola DSM 17136]
          Length = 956

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 95/301 (31%), Gaps = 68/301 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +      +L D             R + +P+ G G F++  ++           
Sbjct: 105 FYTPQAITDTIADVLHDRKVRP--------RLVLEPSAGMGAFISPVLS----------N 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T       ML             + I+       +     RF   +
Sbjct: 147 NPQAEVTAFEKDLLTGK-----MLGH-------LYPQQKIRTEGFEKIEKPFLNRFDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGG 354
           SN PFG     D    + E++   +      + +I+       +H    L+       GG
Sbjct: 195 SNIPFG-----DIAVFDAEYEKKSV------MHRIAAKK----VHTYFFLKGLDAVRDGG 239

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILS 411
             A + S S L     G      R  +++   + + + LP +LF     T +   L IL 
Sbjct: 240 VVAFITSQSVLNTEGNGGT----RYLMMKQADLLSAIRLPNNLFTENANTEVGCDLIILQ 295

Query: 412 NRKTEERRGKVQLINATDL---WTSIRNEGKKRRIIND---DQRRQILDIYVSRENGKFS 465
                     +  ++ ++    +T          + N+   D   +I+     ++   + 
Sbjct: 296 KN--------INKMDLSEEDMRFTRTVRSNHTGVVTNEYFLDHPERIIHTEAKKDTDPYG 347

Query: 466 R 466
           +
Sbjct: 348 K 348


>gi|307154593|ref|YP_003889977.1| Eco57I restriction endonuclease [Cyanothece sp. PCC 7822]
 gi|306984821|gb|ADN16702.1| Eco57I restriction endonuclease [Cyanothece sp. PCC 7822]
          Length = 529

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 81/245 (33%), Gaps = 44/245 (17%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  + +     +L   D          +T+ DP  G G F    ++     
Sbjct: 23  RKKYAQFFTPYPIAYFMAKWILGNPDC---------QTILDPAFGLGVFARAILD----- 68

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +    +   G EL+                        + ++     L  D    K
Sbjct: 69  ----QTNTPIKISGFELDRWIFTEAK----------QLIEKDNISLYNQDYLFTDW--DK 112

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   + NPP+ K    D     KE +N        G+      ++  L  L +  ++ P
Sbjct: 113 KYDGIIGNPPYLKFHSYDNKNSLKEIEN------KLGITLSGLTNLYTLFLLKSLAQIKP 166

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIATYLW 408
           N  GR A ++ S  L +         I+ +LL++  +  I+ L     +F      + + 
Sbjct: 167 N--GRIAYIVPSEFLNSDYGKG----IKEYLLKDGKLRYILILDFQETIFNDVVTTSSIL 220

Query: 409 ILSNR 413
           + +N 
Sbjct: 221 LFAND 225


>gi|282881043|ref|ZP_06289733.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305119|gb|EFA97189.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 2064

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F            +        +    + +  
Sbjct: 111 IVSAIADALNVTDVQIRRCLDPSAGMGAF------------TETFAKSAGMVDAMDKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +D     Q+      +L    ++    SN PFG     D+ 
Sbjct: 159 TARITQA---LH----PYGKDNIFVRQEPFEAIGELEEKDKYDLITSNIPFGDFMIYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                        +   K       GG  A + S   L    +
Sbjct: 212 YSKGENILKRESTR------------TIHNYFFVKGLDTIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              E+ IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 257 PKNEA-IRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|325971695|ref|YP_004247886.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
 gi|324026933|gb|ADY13692.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
          Length = 1632

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 8/215 (3%)

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N   +     S   + +    D  +     EK    Y+     +  ++       +V+ 
Sbjct: 805  QNYSFAQNNPVSKAMQGMISILDEQTPKEDNEKLERFYESVAKRAE-DIDNAEAKQKVIV 863

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCG 215
             +Y+   +       E      TP ++V      + D       +        + DP  G
Sbjct: 864  ELYDKFFKTAFPRTVERLGIVYTPVEIVDFILNSVEDILRKEFGRSLSDENIHILDPFTG 923

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL----ESDPR 269
            TG F+T  +        + K   +   H  E+    + +    +  +   L    + D  
Sbjct: 924  TGTFITRLLQQGIISKDNLKRKYLKEIHANEIVLLAYYIASINIENVFHDLQIEQQHDKS 983

Query: 270  RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
             D    I        D F     +  L N  F K 
Sbjct: 984  VDAIDYIPFEGICLTDTFQLGEDNTILVNEVFPKN 1018


>gi|83816335|ref|YP_446911.1| THUMP domain/methyltransferase domain-containing protein
           [Salinibacter ruber DSM 13855]
 gi|83757729|gb|ABC45842.1| THUMP domain/methyltransferase domain protein [Salinibacter ruber
           DSM 13855]
          Length = 369

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 19/137 (13%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +   PR    L   +          ++P    TL DP CG+   L +A +  AD      
Sbjct: 189 EGYQPRA--ALKANVAYALLRLAHLDAPP--NTLLDPFCGSSTILLEAADLWADT----- 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +   E  +     + +  L                T     F        
Sbjct: 240 -----QCYGSDWNEEAVSGARTNVDLAGLSDRIAIRKGDVWHLDET-----FADVTADLI 289

Query: 296 LSNPPFGKKWEKDKDAV 312
           ++NPPFG +     D  
Sbjct: 290 VTNPPFGVRMASSMDFY 306


>gi|329955480|ref|ZP_08296388.1| hypothetical protein HMPREF9445_01235 [Bacteroides clarus YIT
           12056]
 gi|328525883|gb|EGF52907.1| hypothetical protein HMPREF9445_01235 [Bacteroides clarus YIT
           12056]
          Length = 239

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +        +    F TP  +  L                    + + DPTCG+G  
Sbjct: 89  ELHMAYCSKPGQQANGQFFTPSHICELMV--------MCAAGKKETGQRMGDPTCGSGRL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           L     H           P     G+++      + V  ML+  
Sbjct: 141 LLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHG 174


>gi|288925574|ref|ZP_06419506.1| DNA methylase [Prevotella buccae D17]
 gi|288337512|gb|EFC75866.1| DNA methylase [Prevotella buccae D17]
          Length = 1830

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 87/278 (31%), Gaps = 62/278 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               S  +     F TP  VV            A  +E+  + + + DP+ G G F+   
Sbjct: 93  SYMQSLKNSVMTAFYTPAPVVQEIA--------ASLREAGIVPKRILDPSAGMGEFIRSF 144

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               A+              G E +  T      G ++  L  + +  +    +      
Sbjct: 145 DTIAAEEH---------TTFGFEKDILT------GQMLSALHPEDKIRIRGFEE------ 183

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +   G  F    SN PFG     D    + +    ++ R          G  +      
Sbjct: 184 IESKLGGYFDVVSSNIPFGDVAVFDPVFSKTDEPARKIARMSLHNYFFVKGVDML----- 238

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                    GG  A + S   +    A + E  +R WL+ +  + + V LP +LF     
Sbjct: 239 -------REGGVLAFITSQGVM---NAPTNEP-VREWLMSHTRLISAVRLPNNLFSENAG 287

Query: 401 TNIATYLWILSNR--------------KTEERRGKVQL 424
           T + + L +L  +              K+E+R   V  
Sbjct: 288 TEVGSDLIVLQKQSGKKELTEEEQRFIKSEKRPSGVLF 325


>gi|299822755|ref|ZP_07054641.1| adenine-specific methyltransferase [Listeria grayi DSM 20601]
 gi|299816284|gb|EFI83522.1| adenine-specific methyltransferase [Listeria grayi DSM 20601]
          Length = 335

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 34/219 (15%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP CGTG  L+   N +           ++   G E++    ++ +    ++   +  
Sbjct: 125 ILDPACGTGNLLSTITNQLLLTKD-----KVVQATGIEVDDLLISLALVSSDLQGQRTHL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 +                    +S+ P G  +  D+ A   E K      F    
Sbjct: 180 LHQDGLSNLLVD----------PADIVVSDLPVG-YYPDDERANTYELKQASGHSF---- 224

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                   LF+       +     GG    ++  S   +      +  I++    +  ++
Sbjct: 225 -----AHYLFIEQGMRYTKP----GGYLFFLIPDSMFADSEFPRVDRFIKK----HGHMQ 271

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLIN 426
            I+ LP  LF        + IL  +  E +  K V L N
Sbjct: 272 GIIKLPETLFKSEQSRKSILILQKQSAETKAPKEVLLAN 310


>gi|255102544|ref|ZP_05331521.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile QCD-63q42]
          Length = 2872

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 68/461 (14%), Positives = 131/461 (28%), Gaps = 85/461 (18%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+        D               + +P+ G G F+   
Sbjct: 1120 SEYEAARESTLTSFYTPKTVI--------DGIYKTLSSMGFKQGNILEPSMGIGNFI--- 1168

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G+          +G EL+  +  +                   ++  Q   L 
Sbjct: 1169 -------GNIPDEMSKSKFYGIELDSVSGRIGKL-------------LYPESEVQVKGLE 1208

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D+          E  R           + L   +  
Sbjct: 1209 ETGFSNNFFDVAIGNVPFGEYKVNDR----------EYNRN----------NFLIHDYFF 1248

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + SS  +        +  +RR+L         + LP D F     
Sbjct: 1249 AKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAG 1303

Query: 401  TNIATYLWILSNRKTEERRGKVQ---------------LINATD--LWTSIRNEGKKRRI 443
            T + + +  L  R +   R +                  ++ ++  L +     G+  + 
Sbjct: 1304 TEVTSDIIFLKKRDSVLERDEDWIHLAEDENGLIYNKYFVDHSEQVLGSMREVSGRFGKT 1363

Query: 444  INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +  +        Y+ +EN   S        G R  K  +   +  + D+        D+ 
Sbjct: 1364 LTCEPI-----AYLGQENNMASLKDRIEIAGERISKDAKYEEIELLDDEIASIPATDDVK 1418

Query: 504  WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
                + +    +       +++       E        +   K +  K  + F    I A
Sbjct: 1419 NFSYTLIDDEVYYRENSLFIKKEVSDKNKEKIKDYLKLNAVLKDVIYKQKEDFSEEEIKA 1478

Query: 564  FGRK-DPRADPVTDVNG---EWIPDTNLTEYENVPYLESIQ 600
               K +   D  +  +G          L E  N P + SI+
Sbjct: 1479 SQEKLNEVYDNFSKKHGFVNNLSNTRALKEDSNFPLVSSIE 1519


>gi|218264244|ref|ZP_03478116.1| hypothetical protein PRABACTJOHN_03806 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222199|gb|EEC94849.1| hypothetical protein PRABACTJOHN_03806 [Parabacteroides johnsonii
           DSM 18315]
          Length = 239

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +        +    F TP  +  L                    + + DPTCG+G  
Sbjct: 89  ELHMAYCSKPGQQANGQFFTPSHICELMV--------MCAAGKKETGQRMGDPTCGSGRL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           L     H           P     G+++      + V  ML+  
Sbjct: 141 LLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHG 174


>gi|198275467|ref|ZP_03207998.1| hypothetical protein BACPLE_01632 [Bacteroides plebeius DSM 17135]
 gi|198271096|gb|EDY95366.1| hypothetical protein BACPLE_01632 [Bacteroides plebeius DSM 17135]
          Length = 239

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +        +    F TP  +  L                    + + DPTCG+G  
Sbjct: 89  ELHMAYCSKPGQQANGQFFTPSHICELMV--------MCAAGKKETGQRMGDPTCGSGRL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           L     H           P     G+++      + V  ML+  
Sbjct: 141 LLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHG 174


>gi|18450304|ref|NP_569175.1| hypothetical protein pli0021 [Listeria innocua Clip11262]
 gi|16415805|emb|CAC42019.1| pli0021 [Listeria innocua Clip11262]
          Length = 1569

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 100/337 (29%), Gaps = 57/337 (16%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCG 215
             +Y+   +      +E      TP +VV      + D       K        + DP  G
Sbjct: 838  TLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKQHFGKSLASEGVHVLDPFTG 897

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM--LIRRLES 266
            TG F+   + ++ +     +I             H  E+   ++ +    +      +  
Sbjct: 898  TGTFIVRTLTYLKEQMDAGEISLADITRKFTQELHANEIVLLSYYIAAINIEATFDEING 957

Query: 267  D-----PRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWE 306
            D     P   +       ST ++D      F                  + NPP+  K +
Sbjct: 958  DEEGYVPFEGIVLTDTFESTETEDTLDDDYFGTNDERLKRQQSIPITVIMGNPPYSAKQK 1017

Query: 307  KDKDA---VEKEHKNGELGRFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLS 361
             +         E  +  L          ++ + LF  ++          +  G    + +
Sbjct: 1018 NEDGNQIRTTYEKLDASLQNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITN 1077

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---------------PTDLF-FRTNIAT 405
            +S +     G+    +R+ LLE      ++ L                 ++F   T +  
Sbjct: 1078 NSFI----DGNAMDGMRQSLLEEFSDIYVLNLKGGIRGKTKDQSVLEGGNIFDIMTGV-- 1131

Query: 406  YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             + +L  +     +G++  ++  +     +   K + 
Sbjct: 1132 TIIMLIKKSDYTGKGRIHYLDIGNNLDKYQKLEKLKN 1168


>gi|307707730|ref|ZP_07644209.1| adenine-specific methyltransferase [Streptococcus mitis NCTC 12261]
 gi|307616228|gb|EFN95422.1| adenine-specific methyltransferase [Streptococcus mitis NCTC 12261]
          Length = 317

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLAKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVAARHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKGWLKEEANLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|282883052|ref|ZP_06291653.1| superfamily II DNA and RNA helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297109|gb|EFA89604.1| superfamily II DNA and RNA helicase [Peptoniphilus lacrimalis 315-B]
          Length = 2539

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 125/420 (29%), Gaps = 97/420 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQASRVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRK------------TEERRGKV---QLINATDLWTSIRNEGKKR-------RIIND 446
             L  R               + +G       ++   +      E   R           D
Sbjct: 1019 FLKKRDSVIERDDDWIHLATDNKGLTYNKYFVDNPQMVLGDMKEVSGRFGNTITCDEKED 1078

Query: 447  DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
            +  + ++D + S+E    S+  +        +K         I+D+    R  + +  + 
Sbjct: 1079 ENLKDLMD-FASKEISSNSKYEELSLPATDDVKNFSY----TIIDEEVYLRENSVLIKQN 1133

Query: 507  LSPLHQSFWLDILKPMMQ-QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            +S  ++    D L  M   +       + F  E IK ++AK  +V  + S    FIN+  
Sbjct: 1134 ISDKNKEKIKDYLDIMNALKDVIEKQKDDFSDEEIKESQAKLNEVYDNFSKKHGFINSLS 1193


>gi|255657327|ref|ZP_05402736.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile QCD-23m63]
          Length = 2995

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 68/461 (14%), Positives = 131/461 (28%), Gaps = 85/461 (18%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+        D               + +P+ G G F+   
Sbjct: 1243 SEYEAARESTLTSFYTPKTVI--------DGIYKTLSSMGFKQGNILEPSMGIGNFI--- 1291

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G+          +G EL+  +  +                   ++  Q   L 
Sbjct: 1292 -------GNIPDEMSKSKFYGIELDSVSGRIGKL-------------LYPESEVQVKGLE 1331

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D+          E  R           + L   +  
Sbjct: 1332 ETGFSNNFFDVAIGNVPFGEYKVNDR----------EYNRN----------NFLIHDYFF 1371

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + SS  +        +  +RR+L         + LP D F     
Sbjct: 1372 AKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAG 1426

Query: 401  TNIATYLWILSNRKTEERRGKVQ---------------LINATD--LWTSIRNEGKKRRI 443
            T + + +  L  R +   R +                  ++ ++  L +     G+  + 
Sbjct: 1427 TEVTSDIIFLKKRDSVLERDEDWIHLAEDENGLIYNKYFVDHSEQVLGSMREVSGRFGKT 1486

Query: 444  INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +  +        Y+ +EN   S        G R  K  +   +  + D+        D+ 
Sbjct: 1487 LTCEPI-----AYLGQENNMASLKDRIEIAGERISKDAKYEEIELLDDEIASIPATDDVK 1541

Query: 504  WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
                + +    +       +++       E        +   K +  K  + F    I A
Sbjct: 1542 NFSYTLIDDEVYYRENSLFIKKEVSDKNKEKIKDYLKLNAVLKDVIYKQKEDFSEEEIKA 1601

Query: 564  FGRK-DPRADPVTDVNG---EWIPDTNLTEYENVPYLESIQ 600
               K +   D  +  +G          L E  N P + SI+
Sbjct: 1602 SQEKLNEVYDNFSKKHGFVNNLSNTRALKEDSNFPLVSSIE 1642


>gi|260654988|ref|ZP_05860476.1| putative type I restriction-modification system, M subunit
           [Jonquetella anthropi E3_33 E1]
 gi|260630303|gb|EEX48497.1| putative type I restriction-modification system, M subunit
           [Jonquetella anthropi E3_33 E1]
          Length = 136

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
            AIVL           + +  IR ++ E+  I A+V L  ++F   T   T +  +  
Sbjct: 1   MAIVLPQGRF----NNASDKYIRDFIAEHCRILAVVGLHGNVFKPHTGTKTSVLFVQK 54


>gi|149023613|ref|ZP_01836116.1| hypothetical protein CGSSp23BS72_04265 [Streptococcus pneumoniae
           SP23-BS72]
 gi|225855534|ref|YP_002737046.1| adenine-specific DNA methylase [Streptococcus pneumoniae JJA]
 gi|147929712|gb|EDK80703.1| hypothetical protein CGSSp23BS72_04265 [Streptococcus pneumoniae
           SP23-BS72]
 gi|225723809|gb|ACO19662.1| adenine-specific DNA methylase [Streptococcus pneumoniae JJA]
 gi|332071758|gb|EGI82250.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA17545]
 gi|332199476|gb|EGJ13552.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA47901]
          Length = 317

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEMDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S+ L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSNLLTSPQSD----LLKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|307710911|ref|ZP_07647337.1| hypothetical protein SMSK321_1266 [Streptococcus mitis SK321]
 gi|307617267|gb|EFN96441.1| hypothetical protein SMSK321_1266 [Streptococcus mitis SK321]
          Length = 317

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEKE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLAKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKGWLKEEANLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|254167636|ref|ZP_04874487.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
 gi|289597007|ref|YP_003483703.1| protein of unknown function DUF450 [Aciduliprofundum boonei T469]
 gi|197623445|gb|EDY36009.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
 gi|289534794|gb|ADD09141.1| protein of unknown function DUF450 [Aciduliprofundum boonei T469]
          Length = 995

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 64/469 (13%), Positives = 125/469 (26%), Gaps = 130/469 (27%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         + E       +   L    + A    YN+  +         T  
Sbjct: 236 IFLRMCEDRGVERYGRLLEAAEEDVYAA--LLKLYQEADEK-YNSGLFHFKPEKGRATEP 292

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +        + N K   +       I  L      Y+              +   ++  +
Sbjct: 293 D------DITPNIK--IDSKVLKRIIKGLYYPESPYEF-----------SVISPEILGQV 333

Query: 159 YEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                EV +    + TP+ +V+      +             
Sbjct: 334 YEQFLGKVIRLTKGHRAKVEEKPEVKKAGGVYYTPQYIVNYIVENTVGKLCKGKTPKEME 393

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG-----------------------------SHHKI 236
              + D  CG+G FL  A   + +                                  K 
Sbjct: 394 KIKILDSACGSGSFLLGAYTRLLEEHLRYYTSAKNKKRYRDRIYQDKNGEWHLTIREKKR 453

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPR---------------RDLSKNIQQGST 281
             +   +G +++ +   V    +L++ LE + +                DL  NI+ G++
Sbjct: 454 ILLNSIYGVDIDEQAVEVTKLSLLLKVLEGENKDALERQQKLWRERALPDLGNNIKCGNS 513

Query: 282 ------------------------------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                                            ++     F   + NPP+          
Sbjct: 514 LVGTDYYASGVQMTLFDEERERINAFDWEKEFPEVMKNGGFDVIIGNPPY---------- 563

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           V +E        F          + L++  +   ++L    G    IV +       RA 
Sbjct: 564 VRQEMLGKLKNYFKEHYEVYHGTADLYVYFIERSMKLLKPNGIYGIIVANK----WMRAN 619

Query: 372 SGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKTEE 417
            G   +R WL +  ++E I+    LP  +F +      + I+   K  +
Sbjct: 620 YG-KPLREWLKKWQIVE-ILDFGDLP--VFKKATTYPCIMIVKASKPRK 664


>gi|309799798|ref|ZP_07694008.1| adenine-specific methyltransferase [Streptococcus infantis SK1302]
 gi|308116577|gb|EFO54043.1| adenine-specific methyltransferase [Streptococcus infantis SK1302]
          Length = 317

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 81/257 (31%), Gaps = 48/257 (18%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYDPTCGT 216
           Y+ L+ +        A    TP  + HL   L+  L P   L     G    +       
Sbjct: 70  YQFLLMKAAQTEPLQANHQFTPDAIGHLMIFLMEQLWPAKDLSLLELGSGMGI------L 123

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G     +MN              +   G E++     +  +             DL    
Sbjct: 124 GASFLTSMN------------KKVDYLGIEIDDLLIDLAAS--------MAEVMDLQMGF 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +       + +S+ P G   +    +                +    + + 
Sbjct: 164 VQGDAVRPQVLKES--DFIVSDLPIGYYPDDQIAS-------------RYQVAAKDEHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+     GG A  +  +  L + ++      ++ WL +   + AIVALP D
Sbjct: 209 AHHLLMEQSLKYLKT-GGYAIFLAPTDLLTSSQSDL----LKSWLTDQAQLVAIVALPED 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF +   +  ++++  +
Sbjct: 264 LFAQGAQSKTIFVVQKK 280


>gi|282900924|ref|ZP_06308858.1| Putative Adenine specific DNA methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194193|gb|EFA69156.1| Putative Adenine specific DNA methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1080

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 105/396 (26%), Gaps = 66/396 (16%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNA 111
           SA  EK  +F        ++       F    +        T   R +    +   +   
Sbjct: 226 SADNEKDYSFADIYAQTIAYALFTARVFGYVRDKRAGRTQETLFDRESAWQQLPETNPFL 285

Query: 112 KAIFEDF------DFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLI 163
           + +F+D            +        +         I  +       + ++   YE  +
Sbjct: 286 RKLFQDVSERSAEKLGDDLIGAIADIFVILRTTKMDAILSDFEMKMNREDIVIRFYEDFL 345

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             +  ++ E    + TP  VV        +L+               T+ DP CGTG FL
Sbjct: 346 AAYKPQMRERRGVYYTPEPVVSYMVRSVDILVQEKFNKPLGLADPTVTILDPACGTGTFL 405

Query: 221 TDAMNHVADCGSHH-----------------KIPPILVPHGQELEPETHAVCVAGM---- 259
                 +                        +   +    G EL    +A+    +    
Sbjct: 406 LYIFQLIYQRFQESPATLTEGLADRSWSGYVEERLLPRIFGFELLMSPYAIAHLKIGLFL 465

Query: 260 ----------------LIRRLESDPRRDLSKNIQQGSTLSKDL-----------FTGKRF 292
                           LI  LE    R+ ++ +       ++L              +  
Sbjct: 466 QETGYRFDGAKRLGVYLINTLEDITLREETQQLSLNIPQMEELIAEEAKAGARVKKEEPI 525

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN--KLELPP 350
              + NPP+    E +   +++   +       P   K         +      +  +  
Sbjct: 526 MVVIGNPPYSGHSENNNPWIKELVNDYYFVDGKPLGEKNPKWLQDDYVKFIRFAQWRIDK 585

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           +G G  A + +   L           +R++L+ +  
Sbjct: 586 SGQGVLAFISNHGFL----DNPTFRGMRQYLINSFN 617


>gi|291295623|ref|YP_003507021.1| putative type II DNA modification enzyme [Meiothermus ruber DSM
           1279]
 gi|290470582|gb|ADD28001.1| putative type II DNA modification enzyme [Meiothermus ruber DSM
           1279]
          Length = 1336

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 148 DTVPDRVMSNIYEHLIR----------RFG-----SEVSEGAEDFMTPRDVVHLATALLL 192
             +    + ++YE L+            F          +    + TP  +V +     L
Sbjct: 410 KNLGAEELGSVYEQLLELVPEVDVAAAHFALQNRSGNERKTTGSYYTPDALVQVVLDEAL 469

Query: 193 DPDDALFKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------- 240
           +P  A   ++P   R      + DP  G+G FL  A + +A   +  +            
Sbjct: 470 EPRLAEALKTPDPERALLSLRVVDPAVGSGHFLIAAAHRMARALARIRSGEDEPSPEAQR 529

Query: 241 ---------VPHGQELEPETHAVCVAGMLI 261
                      +G ++   +  +C   + +
Sbjct: 530 SALRDVIRHCLYGVDVNEMSAELCKVALWM 559


>gi|220930539|ref|YP_002507448.1| helicase [Clostridium cellulolyticum H10]
 gi|220000867|gb|ACL77468.1| helicase domain protein [Clostridium cellulolyticum H10]
          Length = 2077

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 61/218 (27%), Gaps = 60/218 (27%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AG 258
                + +P  G G F +              I      +G EL+  +  +       A 
Sbjct: 581 FKGGNILEPAMGIGLFYSLI---------PEDISDKSQLYGVELDSISGRISKQLYQKAD 631

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           + I+  E               T   D F    F   + N PFG    +DK         
Sbjct: 632 IRIQGFE--------------DTDFSDNF----FDIAVGNVPFGDYKLRDK--------- 664

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      +    ++    +   K       GG  A + S   L            R
Sbjct: 665 -----------RYDKLNLNIHDYFFAKTLDKVRPGGIIAYITSKGTL-----DKANGSFR 708

Query: 379 RWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           R+L E   +   + LP + F     T++ T +  L  R
Sbjct: 709 RYLAERAELIGAIRLPNNAFKQIANTDVTTDIIFLQKR 746


>gi|317013330|gb|ADU83938.1| adenine specific DNA methyltransferase [Helicobacter pylori
            Lithuania75]
          Length = 2866

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 123/413 (29%), Gaps = 76/413 (18%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 987  EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1038

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + +   + L  N    +T  +
Sbjct: 1039 -------AHAPSDKNYRFMGTELDP--------------ISASISQFLYPNQVIQNTALE 1077

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 + +   + NPP+G    K   + +KE  N  +  +  G                 
Sbjct: 1078 KHSFHQDYDAFVGNPPYGN--HKIYSSNDKELSNESVHNYFLGK-------------AIK 1122

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +      +   ++R  + +N      + LP  +F  T   
Sbjct: 1123 ELK----DDGIGAFVVSSWFM-----DAKNPKMREHIAKNATFLGAIRLPNSVFKGTGAE 1173

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILD 454
                I+  +K  ++        A   +  I N          +  +        + +I++
Sbjct: 1174 VTSDIVFFKKGVDKATNQSFTKAMPYYDKIINGLDDDTLFALQNNRFDSFTPSDQLKIVN 1233

Query: 455  IYVSRENGKFSRM------LDYRTFGYRRIKVL-------RPLRMSFILDKTGLARLEAD 501
               S    K  ++      +D   FGY+            +  + +  L++  L      
Sbjct: 1234 AIASHFGLKQEKLQRWYEKIDTANFGYKEQDYEIIKDFMDKVGKNNINLNEQTLNEYFIH 1293

Query: 502  ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                 L  L         +   +QIY Y       K    S        K  K
Sbjct: 1294 HPENILGHLSLEETRYSFEVNGEQIYKYELQALEDKSLDLSQALNQAIEKLPK 1346


>gi|182435394|ref|YP_001823113.1| hypothetical protein SGR_1601 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463910|dbj|BAG18430.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 1213

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 86/285 (30%), Gaps = 37/285 (12%)

Query: 35  ILPFTLLRRLECAL---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS-EYSLST 90
           +L    +R  E      EP  +A  +       +    E +V  +    Y    E +   
Sbjct: 69  VLGTVFVRFCEDNRLIPEPYLTAPEDDRRDLALARF--EDYVSTSDDPTYRGWLETAFEE 126

Query: 91  LGSTNTR----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           LG+        +   + +     +  +  +  DF     R E+  L++            
Sbjct: 127 LGAGQAGRLLFDKKHNPLFQIPLSHDSARDLVDFWRA--RDEEGVLVHDFTDPLEEDGDG 184

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                 R + ++Y+ L         +      TP  V        + P     +E     
Sbjct: 185 TKGWDTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMTP---AVREFGYEG 237

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCVA 257
             + DPTCG+G F+  A   +    +  +    +           HG +L P   A+   
Sbjct: 238 LKMIDPTCGSGHFVLGAFRRLVRLWADGQPGRDVHERVAAALDSVHGVDLNPFAVAIARF 297

Query: 258 GML--------IRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFH 293
            +L        +R L      +   ++  G +L K     G  F 
Sbjct: 298 RLLVAAMAASGVRTLGDAAGYEWPIHLAVGDSLIKHRHKQGNLFD 342


>gi|330959662|gb|EGH59922.1| hypothetical protein PMA4326_14004 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 159

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  +  L + L++D +    +       TL +P  G+G  +    N + + G ++
Sbjct: 8   GQFFTPPSISTLLSTLVMDIEHIQSQVKRRGFVTLSEPASGSGAMVIAFANSMLELGINY 67

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +    +     +L+     +    + +  + +      +  + + S           F Y
Sbjct: 68  QQHLHVTL--VDLDIRAVHMAFIQLSLLHIPAVVVHGNTLTLVEHSQWHTPSHVMNLFDY 125


>gi|326445416|ref|ZP_08220150.1| hypothetical protein SclaA2_30317 [Streptomyces clavuligerus ATCC
           27064]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHV 227
                  ++ TP D+  L + +L +P+     + P        +PT GTGG    +   +
Sbjct: 39  HSRRSLGEYHTPPDISRLISEVLANPNRGSGDQPPHSPGEWALEPTAGTGGLFRTSAQVL 98

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              G        ++    EL+P   A      L+
Sbjct: 99  RRNGEDPAERGWVML---ELDPLAAAAAAVNTLV 129


>gi|260871023|ref|YP_003237425.1| hypothetical protein ECO111_5156 [Escherichia coli O111:H- str.
           11128]
 gi|257767379|dbj|BAI38874.1| hypothetical protein ECO111_5156 [Escherichia coli O111:H- str.
           11128]
 gi|323176188|gb|EFZ61780.1| type II restriction enzyme [Escherichia coli 1180]
          Length = 1224

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 28/176 (15%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+                NGEL  F       S   +  +F+ H  
Sbjct: 497 WILAQRYDAVVANPPYMGGKGM----------NGELKEFAKNNFPDSKADLFAMFMQHAF 546

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A V   S +F     S    +R WLL N     +  L    F + + 
Sbjct: 547 SLLK----ENGFNAQVNMQSWMFL----SSYEALRGWLLNNKTFITMAHLGARAFGQISG 598

Query: 403 --IATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKR--RIINDDQRRQI 452
             + T +W+++N  TE  R  V    IN ++         +K        +  ++I
Sbjct: 599 EVVQTTVWVVNNNHTEFYR-PVFFRLINGSEEEKKSALISRKNMFNHTLQNDFKKI 653


>gi|160888203|ref|ZP_02069206.1| hypothetical protein BACUNI_00611 [Bacteroides uniformis ATCC 8492]
 gi|156862338|gb|EDO55769.1| hypothetical protein BACUNI_00611 [Bacteroides uniformis ATCC 8492]
          Length = 1980

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 89/274 (32%), Gaps = 33/274 (12%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F S  +     F TP+D+V +  + L +   A             DP+ GTG F+   
Sbjct: 92  RYFSSLKNSVLTAFYTPQDIVSVLASELGNYGIAPS--------RFLDPSSGTGVFVDAF 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAV---CVAGMLIRRLESDPRRDLSKNIQQGS 280
             H A      +         Q+   +  +       G+    L         K++  G 
Sbjct: 144 QQHSAQQQLSEQQSAKQQSSEQQSSEQHSSEQQPSRTGLSPAGLSRPEIVCFEKDLLTGK 203

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            LS      K       +   G ++    D        G++  F P   K      L   
Sbjct: 204 ILSHLHPEAKVEITGFEDS--GLRYLNRFDITASNIPFGDVAVFDPSFTKSKS---LVRQ 258

Query: 341 HLANKLE--------LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           H A  L              GG  A + S   L    + + E  IR  L+++  + + + 
Sbjct: 259 HAAKSLHNYFFLKGLDNIREGGILAFITSQGVL---DSPANE-NIRYQLMQHSHLVSAIR 314

Query: 393 LPTDLF---FRTNIATYLWILSNR--KTEERRGK 421
           LP +LF     T + + L IL  +  KTE     
Sbjct: 315 LPNNLFTDGAGTEVGSDLIILQKKSDKTEPLTDD 348


>gi|304439303|ref|ZP_07399219.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372222|gb|EFM25812.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 3645

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 111/383 (28%), Gaps = 76/383 (19%)

Query: 45   ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
               L   R    +K L       +    ++    +    SE SL      N    L    
Sbjct: 1795 SLKLTTHRKETIDKKLEEYKEWKENNDLIRTDRENIEGVSEVSLENYKIINEEEILPPSQ 1854

Query: 105  A-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD----RVMSNIY 159
                +  A  + +  +  +  AR ++  +L K    + G+    D   +       + + 
Sbjct: 1855 RLKNNIEAINVLKALEKENRSARKDEQEILAKYI-GWGGLSDVFDEEKEGQWLDARNFLK 1913

Query: 160  EHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E+L     +   E     F TP+ V+                     I  + +P+ GTG 
Sbjct: 1914 ENLTGEEYNRARESTLTAFYTPKVVIDAIYE--------SLSNLGFEIGNILEPSAGTGR 1965

Query: 219  FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLS 273
            F+ +    + +             +G EL+  +  +       A + I+  E        
Sbjct: 1966 FIGNLPEEMKESN----------FYGVELDRISGQIAKELYPNANIQIKGFE-------- 2007

Query: 274  KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                      +  F+   F   + N PFG+                    F     +   
Sbjct: 2008 ----------ETNFSNNLFDVAIGNIPFGE--------------------FKVADREYER 2037

Query: 334  GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             + L   +   K       GG  + + SS  +          ++RR++ E       + L
Sbjct: 2038 NNFLIHDYFFAKTLDKVRDGGIISFITSSGTMDKKS-----EDVRRYISERAEFLGAIRL 2092

Query: 394  PTDLF---FRTNIATYLWILSNR 413
            P   F     T + + +  L  R
Sbjct: 2093 PNRTFKGVAGTEVTSDIIFLKKR 2115


>gi|282901240|ref|ZP_06309168.1| hypothetical protein CRC_02639 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193855|gb|EFA68824.1| hypothetical protein CRC_02639 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 963

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +       F   EL  D        +     + R      E +  + TP+ +        
Sbjct: 535 IPEHRIDEFKQEELVIDWEKGEFRKHAKGKFLFRLAGRDREKSASYYTPQSLTKCLVKYA 594

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           L       +    +  T+ +P  G+G FL +A++ +A+     K   
Sbjct: 595 LKELLEGKQADDILELTICEPAMGSGAFLNEAIDQLAETYLERKQKE 641


>gi|258539243|ref|YP_003173742.1| adenine-specific DNA methylase [Lactobacillus rhamnosus Lc 705]
 gi|257150919|emb|CAR89891.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus Lc 705]
          Length = 337

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 35/239 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         ++ P  +  + D   G+G  L   MN +     H      +  +G +
Sbjct: 104 MASLATFMATVFDQQQPNQL-KVADLAVGSGNLLFAVMNQL-----HKARNVTVKGYGVD 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      ++ L+ +     +           D    K     +S+ P G    
Sbjct: 158 NDEALLAVAGMSSSLQHLDVELFHQDAL----------DGLLFKDIDVVVSDLPVGYY-- 205

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V++  K                 S    + +   +++   GG    +    S +F
Sbjct: 206 ----PVDERAKK-------FATAAKEGHSYAHHLLIEQSMKVLKPGG--LGMFYVPSRVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424
                +G +    WL E    + ++ LP D F        L IL     + +R  +V L
Sbjct: 253 QSEEAAGLTA---WLAEKTYFQGLLNLPDDFFADKQAEKSLLILQKPSQDVKRAKQVLL 308


>gi|26247145|ref|NP_753185.1| hypothetical protein c1271 [Escherichia coli CFT073]
 gi|227888004|ref|ZP_04005809.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|300982500|ref|ZP_07176154.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|26107546|gb|AAN79745.1|AE016759_19 Hypothetical protein c1271 [Escherichia coli CFT073]
 gi|227835000|gb|EEJ45466.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|300408732|gb|EFJ92270.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|307553019|gb|ADN45794.1| conserved hypothetical protein [Escherichia coli ABU 83972]
          Length = 98

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 8/72 (11%)

Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS--------AVREKYLAFGGSNIDLES 71
           D+ G     DF + IL     R +                  +++KY        D + 
Sbjct: 3  NDVRGSVDGWDFKQYILGALFNRFISENFSSYMEYCRSRCCKKIQKKYFKGMKELADKKF 62

Query: 72 FVKVAGYSFYNT 83
            +    ++Y  
Sbjct: 63 IAETMIQNYYFI 74


>gi|120600856|ref|YP_965430.1| Eco57I restriction endonuclease [Shewanella sp. W3-18-1]
 gi|120560949|gb|ABM26876.1| Eco57I restriction endonuclease [Shewanella sp. W3-18-1]
          Length = 609

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 101/338 (29%), Gaps = 51/338 (15%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF 115
           +Y A  G      + V    Y       Y  + + S          S +  FS    +  
Sbjct: 19  RYEACKGMARGYANSVIDDQYRLKIARSYCAALIKSYWDEINARHNSKLKIFSIPTDSEL 78

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            +     T+   + A    K+   F  I+         ++ +IY  ++    +  S+   
Sbjct: 79  AEI----TLDAEDVAKNTGKVIAQFPDID------AGYLIGSIYTAMLP--TAYRSDLGA 126

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL----TDAMNHVADCG 231
            +  P  V  L        D A          ++ DP CG G FL       +       
Sbjct: 127 YYTPPPLVSRLL-------DLAEEAGVDFSTASVIDPACGGGAFLAPVAMRMLQRSKHAS 179

Query: 232 SHHKIPPI-LVPHGQELEP----ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           S  K+  I     G E++P     TH +    ++   + +  R   S      +   +  
Sbjct: 180 SEWKLAQIGKRLKGVEIDPFAAWMTHVLLECVLIEHCIIARRRLAKSVISICDALTYQSP 239

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                F   + NPP+G K   D +  EK  ++        GL       +          
Sbjct: 240 VD---FDLVIGNPPYG-KVSLDTEVREKFSRSLFGHANLYGLF----TDLA--------- 282

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  G  A +  +S L     G     +R  L++ 
Sbjct: 283 LRLAKPEGVIAYLTPTSFL----GGQYFKALRELLIDE 316


>gi|238918328|ref|YP_002931842.1| hypothetical protein NT01EI_0365 [Edwardsiella ictaluri 93-146]
 gi|238867896|gb|ACR67607.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + N++  L         +    F TP DV  +   L L    A+F E P +  TL++P 
Sbjct: 86  FLGNVFMQL-----ELGDKYRGQFFTPWDVARMMAQLQLGDVKAMFDEKPFI--TLHEPA 138

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG G  +    + +   G  +     L     +++P    +    + +  +  +     +
Sbjct: 139 CGAGCMVLAFADALNQAG--YASHLYLWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGNA 196

Query: 274 KNIQQGSTLSKDLF 287
              ++   L     
Sbjct: 197 LCDERRRVLLTPGH 210


>gi|331269201|ref|YP_004395693.1| type IIS restriction enzyme R and M protein [Clostridium botulinum
           BKT015925]
 gi|329125751|gb|AEB75696.1| type IIS restriction enzyme R and M protein, putative [Clostridium
           botulinum BKT015925]
          Length = 589

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 97/291 (33%), Gaps = 42/291 (14%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +     S+ Y  L  +   +  +      TP+++ +     ++  +D +          
Sbjct: 36  NIGKEKFSDTYMDLKEK---QKIKENGVVYTPKEIANYIVDNVIFKEDIINNPYI----K 88

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-VCVAGMLIRRLE-- 265
           + DP+CG G  +      + +    +      V      + +    +    +    ++  
Sbjct: 89  ILDPSCGCGDIIIVCYEKLKNIYEENLEFINEVNRINLRKEDISKHIVKNNLYGFDIDEI 148

Query: 266 -----SDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                +    ++S    + +   +D    K   +F+  + NPP+         +++KE+ 
Sbjct: 149 ALKILAIDLFEVSGCFYENNFKKQDFLLEKFSEKFNIIVGNPPYVGH-----KSIDKEYA 203

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 F        D S  F     N L    +  GR + + S    +   + SGE E+
Sbjct: 204 KKLKVNFKEIYKDKGDISYCFFQQAINNL----SKKGRLSFITSR---YFIESPSGE-EL 255

Query: 378 RRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTEERRGKV 422
           R+ L E   +  IV      F+         +   +  L+N +  +   +V
Sbjct: 256 RKILKEVCSLYKIVD-----FYGIRPFKRIGVDPVIIFLTNEQNIQEEIQV 301


>gi|290956133|ref|YP_003487315.1| hypothetical protein SCAB_16141 [Streptomyces scabiei 87.22]
 gi|260645659|emb|CBG68750.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1343

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 74/242 (30%), Gaps = 55/242 (22%)

Query: 149 TVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            +    + ++YE L+                       +    + TP  ++       LD
Sbjct: 421 HLDAEELGSVYESLLELEPKHSTADRTFTLVEVAGNTRKTTGSYYTPSSLIECLLDSTLD 480

Query: 194 P-------------------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC---- 230
           P                   D A    +  +  T+ DP CG+G FL  +   +A      
Sbjct: 481 PVIRDAVKRGEEAASKSGATDPADAIVNELLSLTVCDPACGSGHFLVASARRIAKQVAAV 540

Query: 231 ----------GSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQ 277
                        H +  ++    +G +L P    +    + +  LE   P   L  +++
Sbjct: 541 RERNPEPTLDAVRHALHEVVARCIYGVDLNPMAVELAKVSLWLEALEPGKPLGFLDAHVK 600

Query: 278 QGS----TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            G+       K L  G      ++     KK  K  + + ++ + G+   F  G   +  
Sbjct: 601 HGNGLIGATPKLLRDGIPDDAFIATEGDDKKHAKALEKINQQERVGQGSLFDLGDEAVQV 660

Query: 334 GS 335
            +
Sbjct: 661 AN 662


>gi|298254935|ref|ZP_06978521.1| Snf2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
          Length = 1203

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159  YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 956  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 1011

Query: 219  FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +++              +   G E++     +  +   +  L++           Q
Sbjct: 1012 TFLTSLD------------KKVDYLGMEMDDLLIDLAASMADVIGLQA--------GFVQ 1051

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 1052 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 1099

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 1100 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSDL----LKEWLKEEASLVAMISLPENLF 1151

Query: 399  FRTNIATYLWILSNR 413
                 +  ++IL  +
Sbjct: 1152 ANAKQSKTIFILQKK 1166


>gi|84516120|ref|ZP_01003480.1| putative type II DNA modification enzyme [Loktanella vestfoldensis
           SKA53]
 gi|84509816|gb|EAQ06273.1| putative type II DNA modification enzyme [Loktanella vestfoldensis
           SKA53]
          Length = 1448

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 95/307 (30%), Gaps = 71/307 (23%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL---STL 91
           +     L            A  ++ L    +  D      + GYS +   E  +   S  
Sbjct: 302 VYRLIFL-----------FAAEDRDLLHAPNTPDNARKAYIGGYSLHRLRERCVRNGSLD 350

Query: 92  GSTNTRNNLESYIASFSD--------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            + +    ++S   + +D            +FE    S+  A   +     K   + +  
Sbjct: 351 KNIDAWEGMKSLFNALADGQSALGLVALGGLFEPEKLSNLTACKVENKRFLKAIWHIAWF 410

Query: 144 --------ELHPDTVPDRVMSNIYEHLIR------------RFGS------EVSEGAEDF 177
                   +++   +    + ++YE L+              F           + +  +
Sbjct: 411 RPEGQPMTKVNWRDMQTEELGSVYESLLELTPELNLEARDFTFAEGDATKGNARKVSGSY 470

Query: 178 MTPRDVVHLATALLLDPD-DALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADC 230
            TP  +V L     LDP  DA    +P       +  ++ DP CG+G FL  A    A  
Sbjct: 471 YTPDSLVKLLLDTTLDPVLDAAESRNPNDPAAELLKLSIIDPACGSGHFLLGAARRAAAR 530

Query: 231 GSHHKIPPILV---------------PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSK 274
            + H++P  +                  G +  P    +C   + I  LE   P   L  
Sbjct: 531 IAQHRMPGAISKEVFQHALREVVSSCIFGSDRNPMAVELCKVALWIEALEPGKPLSFLDA 590

Query: 275 NIQQGST 281
            I+ G +
Sbjct: 591 RIKCGDS 597


>gi|227535801|ref|ZP_03965850.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244289|gb|EEI94304.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1811

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 75/249 (30%), Gaps = 60/249 (24%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  ++        D   +  ++S   I    +P+ G G F+                
Sbjct: 105 FYTPPQII--------DAVSSALRDSGLKIDKFLEPSAGIGSFIQSFSE----------- 145

Query: 237 PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +     E +  T  +       + + I   E  P ++ +                  
Sbjct: 146 NQQVKVTAYEKDLLTGKILKQLYPESNIRISGFEEIPEKEQNS----------------- 188

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +    SN PFG     D    +  +              I +   L    +         
Sbjct: 189 YDVVASNIPFG-----DTSVFDLSYSRSRNPAKEQAARSIHNYFFLKGNDMLR------- 236

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
            GG    + S   L + +       IRR L++++ + + V LP +LF     T + + L 
Sbjct: 237 EGGLQVFITSQGILNSPKNEP----IRRALMQDNNLVSAVRLPNNLFTDYAGTEVGSDLI 292

Query: 409 ILSNRKTEE 417
           IL     ++
Sbjct: 293 ILQKNTAKQ 301


>gi|262202558|ref|YP_003273766.1| type III restriction protein res subunit [Gordonia bronchialis DSM
           43247]
 gi|262085905|gb|ACY21873.1| type III restriction protein res subunit [Gordonia bronchialis DSM
           43247]
          Length = 1632

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 63/224 (28%), Gaps = 15/224 (6%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDL-------ESFVKVAGYSFYNTSEYSLSTLGSTN 95
           R+   L     AV +++  F  +  D        +  + +          +     G   
Sbjct: 751 RINALLADADHAVTQRFELFVQALRDNLNDSVSRDDAISMLSQHLITKPVFDALFAGHEF 810

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             +N  S +           +D +  S  + LEK     +        E+       +V+
Sbjct: 811 AAHNPVSIV---MQQMIDTLDDANLESETSGLEKFYQSVR----IRASEVTSADGKQQVI 863

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTC 214
           + +YE   R    + ++      TP ++V              F          + DP  
Sbjct: 864 AELYERFFRVAFRKQADALGIVYTPTEIVDFILRAADHVSRDTFGRGLTDDGVHILDPFT 923

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
           GTG FLT  +                  H  E+    + +    
Sbjct: 924 GTGTFLTRLLQSGLILPHDLGRKYRNELHANEIMLLAYYIAAVN 967


>gi|300814911|ref|ZP_07095142.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511001|gb|EFK38270.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2848

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 90/585 (15%), Positives = 168/585 (28%), Gaps = 96/585 (16%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
             RLE  LE     +  K         +     K   ++F  T E     L  +   NN  
Sbjct: 983  YRLESDLERVFENLTYKQ---PEQTTEETQIRKAEAHNFKITEETLPEKLSPSERLNNNL 1039

Query: 102  SYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
              ++  +       E D      +A+    G L ++           D       + + E
Sbjct: 1040 EAVSMLNRVESGERELDIAAQEVLAKYVGWGGLSEVFDE------SKDGQWKEARAFLKE 1093

Query: 161  HL-IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L +  + +        F TP+ V+        D               + +P+ G G F
Sbjct: 1094 NLSLSEYEAARESTLTSFYTPKTVI--------DGIYKTLSSMGFKQGNILEPSMGIGNF 1145

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +          G+          +G EL+  +  +                   ++  Q 
Sbjct: 1146 I----------GNLPDEMNKSKFYGVELDSVSGRIGKL-------------LYPESEVQV 1182

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              L +  F+   F   + N PFG+    D+          E  R           + L  
Sbjct: 1183 KGLEETSFSNNFFDVAIGNVPFGEYKVNDR----------EYNRN----------NFLIH 1222

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A + SS  +        +  +RR+L         + LP D F 
Sbjct: 1223 DYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFK 1277

Query: 399  --FRTNIATYLWILSNRK------------TEERRGKV---QLINATD--LWTSIRNEGK 439
                T + + +  L  R              E+  G V     ++  +  L +     G+
Sbjct: 1278 GVAGTEVTSDIIFLKKRDSVLERDEDWIHLAEDENGLVYNKYFVDHPEQVLGSMREVSGR 1337

Query: 440  KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
              + +  +        ++ +EN   S        G R  K  +   +  + D+       
Sbjct: 1338 FGKTLTCEPI-----AFLGQENNMASLKDRIEIAGERISKDAKYEEIELLDDEITSIPAT 1392

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
             D+     + +    +       +++       E        +   K +  K  + F   
Sbjct: 1393 DDVKNFSYTLIDDEVYYRENSLFIKKEVSDKNKEKIKDYLELNAALKDVIYKQKEDFSEE 1452

Query: 560  FINAFGRK-DPRADPVTDVNG---EWIPDTNLTEYENVPYLESIQ 600
             I A   K +   D  +  +G          L E  N P + SI+
Sbjct: 1453 EIKASQEKLNEVYDNFSKKHGFVNNLSNTRALKEDSNFPLVSSIE 1497


>gi|261839299|gb|ACX99064.1| type II R-M system methyltransferase [Helicobacter pylori 52]
          Length = 545

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K+   ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKSVHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP ++V     L   P D    ++      
Sbjct: 88  SFDLEKLGSYYEE---ELSNTTRNLEGIYYTPNEIVE---QLFTLPKDFDASQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+H N
Sbjct: 177 RIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQHFN 229


>gi|237650608|ref|ZP_04524860.1| adenine-specific DNA methylase [Streptococcus pneumoniae CCRI 1974]
 gi|237821068|ref|ZP_04596913.1| adenine-specific DNA methylase [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 317

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S+ L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSNLLTSPQSDL----LKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|270284039|ref|ZP_06193810.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
 gi|270277981|gb|EFA23835.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
          Length = 91

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 21/54 (38%)

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           ++   +E ++   TD F+       + + +  +  +     + I+  D    +R
Sbjct: 1   MKKHTLEGVITCNTDTFYGVGTNPVIAVFTAHELHDEDKVCKFIDFRDDGYDVR 54


>gi|19908492|gb|AAM02924.1|AF347071_1 restriction-modification system LlaBIII [Lactococcus lactis]
          Length = 1584

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 81/264 (30%), Gaps = 39/264 (14%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCG 215
             +Y+   +      +E      TP +VV      + D     F +S       + DP  G
Sbjct: 848  TLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTG 907

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM--LIRRLES 266
            TG F+   + ++ +     +I         +   H  E+   ++ +    +      +  
Sbjct: 908  TGTFIVRTLTYLKEQMDAGEISLADITRKFMKELHANEIVLLSYYIAAINIESTFDEING 967

Query: 267  D-----PRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWE 306
            D     P   +       ST ++D      F                  + NPP+  K +
Sbjct: 968  DEEGYVPFEGIVLTDTFESTETEDTLDDDYFGTNDERLKRQQKVPITVIMGNPPYSAKQK 1027

Query: 307  KDKDA---VEKEHKNGELGRFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLS 361
             +         E  +  L          ++ + LF  ++          +  G    + +
Sbjct: 1028 NEDGNQIRTTYEKLDASLQNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITN 1087

Query: 362  SSPLFNGRAGSGESEIRRWLLEND 385
            +S +     G+    +R+ LLE  
Sbjct: 1088 NSFI----DGNAMDGMRQSLLEEF 1107


>gi|229551842|ref|ZP_04440567.1| adenine specific DNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314786|gb|EEN80759.1| adenine specific DNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
          Length = 337

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 35/239 (14%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L         ++ P  +  + D   G+G  L   MN +     H      +  +G +
Sbjct: 104 MASLATFMATVFDQQQPNQL-KVADLAVGSGNLLFAVMNQL-----HKARNVTVKGYGVD 157

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    AV      ++ L+ +     +           D    K     +S+ P G    
Sbjct: 158 NDEALLAVAGMSSSLQHLDVELFHQDAL----------DGLLFKDIDVVVSDLPVGYYPV 207

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            ++                              + +   +++   GG    +    S +F
Sbjct: 208 DERAKKFATAAKKGHS-------------YAHHLLIEQSMKVLKPGG--LGMFYVPSRVF 252

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424
                +G +    WL E    + ++ LP D F        L IL     + +R  +V L
Sbjct: 253 QSEEAAGLTA---WLAEKTYFQGLLNLPDDFFADKQAEKSLLILQKPSQDVKRAKQVLL 308


>gi|317181593|dbj|BAJ59377.1| hypothetical protein HPF57_0303 [Helicobacter pylori F57]
          Length = 2818

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 121/403 (30%), Gaps = 80/403 (19%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            + TP     L    +    D L   +    + +++P+ GTG F+           +H   
Sbjct: 985  YYTP----KLVIDSIYQALDQLGFNNDSHQKEIFEPSLGTGKFI-----------AHAPS 1029

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   G EL+P              + ++  + L  N    +T  ++    + +   +
Sbjct: 1030 DKNYRFMGTELDP--------------ISANISKFLYPNQVIQNTALENHQFYQEYDAFV 1075

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             NPP+G    K   + +KE  N  +  +  G                 +L+      G  
Sbjct: 1076 GNPPYGS--HKIYSSNDKELSNESVHNYFLGK-------------AIKELK----DDGIG 1116

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY--LWILSNR- 413
            A V+SS  +         S++R  + +N      + LP  +F  T       +       
Sbjct: 1117 AFVVSSWFM-----DGKNSKMREHIAQNATFLGAIRLPNSVFKNTGAEVTSDIVFFKKGV 1171

Query: 414  ---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---REN 461
                     K      K+  I++ D  T    +  +        + +I++   S    + 
Sbjct: 1172 DEATNQSFTKAMPYYDKI--IDSLDDNTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQ 1229

Query: 462  GKFSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
             K  R    +D   FGY+          + +    +  L++  L           L  L 
Sbjct: 1230 EKLQRWYEKIDTANFGYKEQDYKIIKDFIDKVGENNINLNEQTLNEYFIRHPENILGNLS 1289

Query: 512  QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                    +   +QIY Y       K    S        K  K
Sbjct: 1290 LEKTRYSFEINGEQIYKYELQALEDKSLNLSQALNQAIEKLPK 1332


>gi|317152124|ref|YP_004120172.1| type III restriction protein res subunit [Desulfovibrio aespoeensis
            Aspo-2]
 gi|316942375|gb|ADU61426.1| type III restriction protein res subunit [Desulfovibrio aespoeensis
            Aspo-2]
          Length = 1613

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 61/459 (13%), Positives = 124/459 (27%), Gaps = 77/459 (16%)

Query: 47   ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
            A       +R+       S  D E    +A +        +L    S   +N +   +  
Sbjct: 759  AFAEFADELRDD---LNDSITDEEIIEMLAQHLVTKPVFEALFEGYSFAQQNPISQAMQK 815

Query: 107  FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPD-----RVMSNIYE 160
              D  +                         + F   ++L  + + +     +++  +Y+
Sbjct: 816  VLDTLEGH--------------HLHKEADTLEKFYDSVKLRAEGIDNAEGKQKIVVELYD 861

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGF 219
               R     ++E      TP +VV      + D   + F ++       + DP  GTG F
Sbjct: 862  KFFRNAFPRMTERLGIVYTPVEVVDFIIHSVNDVLKSEFGQTLGSEGVHIIDPFTGTGTF 921

Query: 220  ---LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPR 269
               L  +     +   H         H  E+    + +           ++  + + +P 
Sbjct: 922  ITRLLQSGLISPEQLPHKYKHE---IHANEIVLLAYYIAAINIEAVYHTLMGGKGKYEPF 978

Query: 270  RDLSKNIQQGSTLSKDLFTGKRFH--------------YCLSNPPFGKKWEKDKDAVEKE 315
              +           KD+ +                     + NPP+    + D D     
Sbjct: 979  EGICLTDTFQMYERKDMISELLEDNSERRMRQKKLDIRVIIGNPPYSSGQKSDNDDAANV 1038

Query: 316  HKNGELGRFGPGLPKISDGS----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
               G          K S G+        +             G    V ++  L     G
Sbjct: 1039 KYAGLDEEIQNTYVKASTGNPRSLYDSYIRAFRWASSRIKDSGIIGFVSNAGFL----NG 1094

Query: 372  SGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTE 416
                 +R+ L+       +  L  +              +F   +     + +L      
Sbjct: 1095 KAADGMRKCLVSEFSSTYVFNLRGNQRTSGEQSRKEGGKIFGSGSRSPIAITLLIKNPNA 1154

Query: 417  ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            E++G+   IN  D+   +  E K   + N      I   
Sbjct: 1155 EKQGQ---INYCDVGEYLSREEKLDIVSNYTSINGIATA 1190


>gi|238020656|ref|ZP_04601082.1| hypothetical protein GCWU000324_00545 [Kingella oralis ATCC 51147]
 gi|237867636|gb|EEP68642.1| hypothetical protein GCWU000324_00545 [Kingella oralis ATCC 51147]
          Length = 964

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 12/108 (11%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVS------------EGAEDFMTPRDVVHLAT 188
           +      + +P  ++ +IYE  +    +  +            +    F TP+ +V    
Sbjct: 328 TNTPYDFNYIPVHILGSIYERFLGNIIAIDNGKAAIEQKPEVRKAGGVFYTPKYIVDYIV 387

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
              +    A             D  CG+G FL    + + D   ++  
Sbjct: 388 ENTVGKIIAGKNPDYITKLKFADIACGSGSFLIGVYDCLLDYHKNYYN 435



 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 20/169 (11%)

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           +  ++   L  D       N          +F    F   + NPP+ K  +K+  A  K+
Sbjct: 530 IMDIMGDELAQDEDIRRKINPFDFQAAFASVFAAGGFDAIVGNPPYVKVSDKELLAYFKQ 589

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           H             +  +      +    +        G   +++ ++ L +       +
Sbjct: 590 H------------FQHQNYQYDLYLLFLERYHALLKEKGLLGVIVPNTWLQSVT----FT 633

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           +IR+ LL +     I+     +F    + T++ +         +GK   
Sbjct: 634 KIRKHLLGDYRWHKILHGKEHIFDAV-VDTHVLVFEKG---SLKGKSLF 678


>gi|154687069|ref|YP_001422230.1| YtxK [Bacillus amyloliquefaciens FZB42]
 gi|154352920|gb|ABS74999.1| YtxK [Bacillus amyloliquefaciens FZB42]
          Length = 328

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 40/220 (18%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGMLI 261
               TL DP CGTG  L  A N ++D  +           G E++     +    A +  
Sbjct: 116 RKGLTLLDPACGTGNLLLTAANQLSDKAAKS--------FGIEIDDVLLKIAYAQANLQE 167

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           + +E   +  L     +                 + + P G  +  D+ A   E K  E 
Sbjct: 168 KEMELFCQDSLQPLFIEP------------ADAVICDLPVG-YYPNDEGAEAFELKADEG 214

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F                    +       GG    ++ +    + ++     +++R+ 
Sbjct: 215 HSFAH-------------HLFIEQSVKHTKPGGYLFFMIPNHLFDSAQSD----KLKRFF 257

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            E   I A++ LP  +F     A  + IL  +  + +  K
Sbjct: 258 AEKVYINALLQLPATMFKDEAQAKSILILQKKGEDAKPPK 297


>gi|330468259|ref|YP_004406002.1| hypothetical protein VAB18032_21510 [Verrucosispora maris
           AB-18-032]
 gi|328811230|gb|AEB45402.1| hypothetical protein VAB18032_21510 [Verrucosispora maris
           AB-18-032]
          Length = 1678

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 28/137 (20%)

Query: 158 IYE--HLIRRFGSEVSEGAEDFMTPRDVVHLATALLL----DPDDALFKESPGMIRTLYD 211
           +YE    + R      + +  + TP+ +  +   L L    D DD +      +  T+ +
Sbjct: 524 VYEAGQFVYRLAGRDRQTSASYYTPQSLTEVTVQLALKYRLDQDDTITLARELLDWTICE 583

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------------------HGQELEP 249
           P  G+G FL +A+N VA      +   +                         +G +L  
Sbjct: 584 PALGSGAFLNEAINQVAAEYLRRRQKELDTTLDPEDYHLELQRVKAYIALHNSYGVDLNR 643

Query: 250 ETHAVCVAGMLIRRLES 266
               +    + +  + +
Sbjct: 644 TAVELAEVSLWLNVMHA 660


>gi|219364571|ref|YP_002455624.1| hypothetical protein BafACA1_AB32 [Borrelia afzelii ACA-1]
 gi|216752826|gb|ACJ73483.1| hypothetical protein BafACA1_AB32 [Borrelia afzelii ACA-1]
          Length = 1058

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 12/118 (10%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGM 205
           +        YE  + ++ + + +    + TP  VV+        +L          +   
Sbjct: 313 ISKDPYLYFYEDFLAKYDANLRKAKGVYYTPSPVVNFIVSSLQKVLKKEFKLELGFATRD 372

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVC 255
             T+ D   GTG FL + +  + D  +              +   +G E     +AV 
Sbjct: 373 KVTVLDFATGTGTFLLEVIKAILDKITEKSGKRPEYIDNHILKNIYGFEYLMAPYAVA 430


>gi|119384265|ref|YP_915321.1| hypothetical protein Pden_1525 [Paracoccus denitrificans PD1222]
 gi|119374032|gb|ABL69625.1| hypothetical protein Pden_1525 [Paracoccus denitrificans PD1222]
          Length = 1459

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 50/295 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87
           +     L   E          + +  A       L+S  K    +      +        
Sbjct: 280 VYRLIFLMVAEDRNLLHPEKAKPEARALYAQGYSLQSLRKQCYRAATWDKHHDRYEGVKI 339

Query: 88  -LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L        L +    F+++     E     +    +E    L  +      + ++
Sbjct: 340 VFRALTHGQPALALPALGGLFAEDRLPHLETARLRNRAF-MEALYRLSWLADKTGMVPVN 398

Query: 147 PDTVPDRVMSNIYEHLIR------------RFGSEVSEGAED-------FMTPRDVVHLA 187
              +    + ++YE L+              F SE +E   +       + TP  +V   
Sbjct: 399 WRAMETEELGSVYESLLELQPQLCDDGKTLVFASEAAEQKGNQRKTTGSYYTPDSLVQAL 458

Query: 188 TALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVA------------- 228
               LDP     +          +  ++ DP CG+G FL  A   +A             
Sbjct: 459 LDTALDPVLDKTEAEADDPAKALLKLSVIDPACGSGHFLLAAARRIATRLARIREGGTPG 518

Query: 229 -DCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGS 280
            +   H  +       HG +  P    +    + I  ++   P       I+ G 
Sbjct: 519 LEHFRHALRDVARCCIHGVDRNPMAVELTKVALWIETVDPGLPLGFFDAQIRCGD 573


>gi|197294496|ref|YP_001799037.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853823|emb|CAM11767.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 77/282 (27%), Gaps = 68/282 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  V      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKATIYTPSWVSQFLYNILSLQIQRGL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPEISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER--------RGKVQLINATDLWTS 433
                + + I +    +          +     IN+++ +  
Sbjct: 183 NVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIP 224


>gi|114331916|ref|YP_748138.1| type I site-specific deoxyribonuclease HsdM [Nitrosomonas eutropha
           C91]
 gi|114308930|gb|ABI60173.1| type I site-specific deoxyribonuclease HsdM [Nitrosomonas eutropha
           C91]
          Length = 116

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF---SR 466
           LS  KT+      Q ++A  L+    N       + D    QI+ ++ S+ N +    S 
Sbjct: 2   LSKHKTDTT---TQFMDANGLFKKETN----NNTLTDAHIEQIMQVFGSKANVEHVAQSV 54

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             +        + V   +      +  G+A+L A++ 
Sbjct: 55  PFEKVADDDYNLPVCSYVDAKDNREVVGIAKLNAELK 91


>gi|320527864|ref|ZP_08029032.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
 gi|320131801|gb|EFW24363.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
          Length = 2915

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 112/385 (29%), Gaps = 68/385 (17%)

Query: 41   LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
            L RLE  L+     +           I+     K   ++F  T E     L  +   N+ 
Sbjct: 1056 LYRLESDLDRLFQNITYTN---PEKTIEEVEIKKADAHNFKITEETLPEKLSPSERLNSN 1112

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
               I+  +   +    D D ++    L K      +   F       +   +   S + E
Sbjct: 1113 LEAISMLNRIERGE-RDLDINAQ-EVLSKYVGWGGLADVFDE---SKEGQWEAARSFLKE 1167

Query: 161  HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L    + +        F TP+ V+        D               + +P+ G G F
Sbjct: 1168 NLSPSEYEAARESTLTAFYTPKTVI--------DSVYKTLAGMGFKSGNILEPSMGVGNF 1219

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +          G+          +G EL+  +  +                   ++  Q 
Sbjct: 1220 I----------GNLPDEMSRSKFYGVELDSVSGRIGKL-------------LYPESEVQI 1256

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                +  F+   F   + N PFG+    D+D                     +  + L  
Sbjct: 1257 KGFEETTFSNNFFDAVIGNVPFGEYKVNDRD--------------------YNKNNFLIH 1296

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A + SS  +        +  +RR++         + LP D F 
Sbjct: 1297 DYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYIAARAEFLGAIRLPNDTFK 1351

Query: 399  --FRTNIATYLWILSNRKTEERRGK 421
                T + + +  L  R +   R +
Sbjct: 1352 GVAGTEVTSDIIFLKKRDSIRERDE 1376


>gi|225870596|ref|YP_002746543.1| conjugative transposon DNA recombination protein [Streptococcus equi
            subsp. equi 4047]
 gi|213033071|emb|CAP20354.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi]
 gi|225700000|emb|CAW93996.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi 4047]
          Length = 3975

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 51/228 (22%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D               + +P+ GTG F+          G+          +G EL+
Sbjct: 2230 KIVIDSIYQAVLNMGFESGNILEPSMGTGRFI----------GNLPDSMKGSKFYGVELD 2279

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +               R       Q     +  F+   F   + N PFG     +
Sbjct: 2280 SISGRIA-------------SRLYPNAKIQIKGFEETTFSNNLFDVAVGNVPFG-----E 2321

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
               V++E++                 + L       K       GG  A + SS  +   
Sbjct: 2322 YKIVDREYE---------------KNNFLIHDFFFAKTLDKVRSGGVVAFISSSGTMDKK 2366

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                   +IRR++ E       + LP + F     T + + +  L  R
Sbjct: 2367 S-----EDIRRYISERAEFLGAIRLPNNTFKGEAGTEVTSDIIFLKKR 2409


>gi|1546793|gb|AAC57943.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
           SC1A]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 76/251 (30%), Gaps = 64/251 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++ G +       F TP+ +            D +F+  P   +++ +P+CG+G FL + 
Sbjct: 12  KQLGMKHRSKMGIFFTPKPL-----------RDIVFQHIPINPQSVLEPSCGSGEFLVEC 60

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                         P     G EL+    ++                          T  
Sbjct: 61  ETRF----------PTASITGVELDETLASISKEN---------------TTRSTIYTQD 95

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F   +F   + NPPF +        V K+  +G                 L++  L 
Sbjct: 96  FLTFDEGKFDLIIGNPPFVQM-----KTVNKQASSGRSN--------------LYIEILF 136

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTDLFFRT 401
             +    N  G  A+V+ S+ +     G      R  +L   ++    I       F  T
Sbjct: 137 KCMTQHLNDNGVLAMVIPSTIM----NGHFSQPTRELILSKKILHFETI---REHTFKDT 189

Query: 402 NIATYLWILSN 412
                + ++ N
Sbjct: 190 KAGVSILVIQN 200


>gi|126658645|ref|ZP_01729791.1| N-6 DNA methylase [Cyanothece sp. CCY0110]
 gi|126620082|gb|EAZ90805.1| N-6 DNA methylase [Cyanothece sp. CCY0110]
          Length = 512

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 63/287 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  V  +    + +               + DP  G G F         + 
Sbjct: 15  RKEYGQFFTPSLVAQMMAKWVTENHP----------EKILDPAFGLGIFY--------EE 56

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S  K+         E++           ++  L  + + + +  I     L  D+    
Sbjct: 57  ISKLKLQYQWHFTAYEID---------NNILNYLH-NIQNNNNLTIFNQDYLESDM---D 103

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+  +++K K+  +   K  +  + G  L   S+ + +FL+    +L    
Sbjct: 104 YYDAIICNPPY-LRFQKFKNRHDILPKIEQ--QIGKKLGGYSNIASIFLIKALQQL---- 156

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYLW 408
           N  GR A +L       G       EI++ L+EN L++ I+      D+F        + 
Sbjct: 157 NLNGRLAFILPFEFFNTGYG----KEIKKTLIENYLLKQIIIFANEKDIFPDATTTICIL 212

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +  N                     ++ E K   I N  + ++I +I
Sbjct: 213 LCQND-------------------QLKQEIKITNIHNTQEIKEIANI 240


>gi|117621762|ref|YP_854353.1| hypothetical protein BAPKO_3518 [Borrelia afzelii PKo]
 gi|110891148|gb|ABH02310.1| hypothetical protein BAPKO_3518 [Borrelia afzelii PKo]
          Length = 1070

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 12/118 (10%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGM 205
           +        YE  + ++ + + +    + TP  VV+        +L          +   
Sbjct: 325 ISKDPYLYFYEDFLAKYDANLRKAKGVYYTPSPVVNFIVSSLQKVLKKEFKLELGFATRD 384

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVC 255
             T+ D   GTG FL + +  + D  +              +   +G E     +AV 
Sbjct: 385 QVTVLDFATGTGTFLLEVIKAILDKITEKSGKRPEYIDNHILKNIYGFEYLMAPYAVA 442


>gi|315641008|ref|ZP_07896094.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
 gi|315483232|gb|EFU73742.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
          Length = 1002

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 32/283 (11%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           R LE   E      +           D  S   +    F  + +++++          + 
Sbjct: 711 RYLEDWSEDVAKIAQRHIEQITIMIKDKNSKTAIEFEKFLKSLQHNINESIDEKQAIEML 770

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--------- 152
           +     +   +A+F ++ F +     E    + +    F G     D + +         
Sbjct: 771 AQHLITAPIFEALFGEYSFVNNNPVSEAMDKIVEELSKFGGFNKEQDELKEFYDSVKLRA 830

Query: 153 ----------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KE 201
                     R++  +Y+    +   E ++      TP +VV      + D     F K 
Sbjct: 831 EGIDNAEAKQRIIITLYDKFFSKGFKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKA 890

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPE-----THAV 254
                  + DP  GTG F+   ++++ D        +  +   + QEL        ++ +
Sbjct: 891 IEDEGVHILDPFTGTGTFIVRTLHYLKDKLSNGEITLADVTRKYTQELHANEIVLLSYYI 950

Query: 255 CVAGM-----LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               +      I   E  P   +       ST  +D      F
Sbjct: 951 AAINIESTFAEINHEEYKPFEGIVLTDTFESTEQEDTLDDSFF 993


>gi|254523728|ref|ZP_05135783.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
 gi|219721319|gb|EED39844.1| putative DNA methylase [Stenotrophomonas sp. SKA14]
          Length = 4560

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 54/220 (24%), Gaps = 50/220 (22%)

Query: 197  ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
             + K        + +P  G G F                +       G EL+  T  +  
Sbjct: 1413 DMVKTMGFQGGRVLEPAMGIGNFF---------GLMPQALQRRSQLAGIELDQTTGGMAK 1463

Query: 257  AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                             + +    + + D F    +   + N PF      D+       
Sbjct: 1464 L---------LYPGANVRVMPYQESKTPDNF----YDLVIGNWPFENTVIADR------- 1503

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                  R  P L                 L+    GG      L       G        
Sbjct: 1504 ---RYQRLNPHLHDY---------FFLKALDQTRPGG------LVVGITSAGTMDKKGFG 1545

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            +R  L +   + A   LP+  F     T + T + IL  R
Sbjct: 1546 VRAELAKKGELLAAFRLPSGAFEEYAGTQVVTDILILRKR 1585


>gi|229496983|ref|ZP_04390688.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316085|gb|EEN82013.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 2065

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 38/226 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F            +             E +  
Sbjct: 111 IVAAISDALTATNVQIRRCLDPSAGMGAF------------TETFSKKAGTVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   I        +D     Q       +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---IH----PYGQDNIIVRQAPFEAIGELEDKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+            + +     +   K       GG  A + S   L    +
Sbjct: 207 VYDREYSKGKD-------ILKRESTRAIHNYFFVKGLDCIKEGGLLAFITSQGVL---DS 256

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
              E+ IRR+L++N  + + + LP+ +F     T + + L +L  +
Sbjct: 257 PKNEA-IRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQ 301


>gi|229099098|ref|ZP_04230032.1| hypothetical protein bcere0020_43210 [Bacillus cereus Rock3-29]
 gi|229118128|ref|ZP_04247487.1| hypothetical protein bcere0017_43970 [Bacillus cereus Rock1-3]
 gi|228665351|gb|EEL20834.1| hypothetical protein bcere0017_43970 [Bacillus cereus Rock1-3]
 gi|228684326|gb|EEL38270.1| hypothetical protein bcere0020_43210 [Bacillus cereus Rock3-29]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 79/271 (29%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 59  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGKTEI--- 114

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 115 ---TVLDPAIGTGNLMTTVFNSAKEELA-------MSGFGVEVDEVLIKLALVNANLQKH 164

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G       +    E+K     
Sbjct: 165 GIEFFHQDGLAPLYI------------DPVDAVVSDLPIG---YYPNEISASEYKLKADQ 209

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                                 +       GG    ++ +    + +A    + I+    
Sbjct: 210 GMSYAHH-----------LFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 254

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 255 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 285


>gi|328952687|ref|YP_004370021.1| DNA methyltransferase [Desulfobacca acetoxidans DSM 11109]
 gi|328453011|gb|AEB08840.1| DNA methyltransferase [Desulfobacca acetoxidans DSM 11109]
          Length = 1091

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDV----VHLATALLLDPDDALFKESPGMIRTLYDP 212
             YE  +  +  ++ +    + TP +V    V L   LL +  +A +      + TL DP
Sbjct: 308 YFYEDFLAAYDPKMRKERGVYYTPVEVVQAQVRLVAELLTERFEADYSFVSPDVVTL-DP 366

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP 237
             GTG ++  A+ H        K P
Sbjct: 367 GAGTGTYILAALQHGLQQIEEAKGP 391


>gi|307293025|ref|ZP_07572871.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium chlorophenolicum L-1]
 gi|306881091|gb|EFN12307.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium chlorophenolicum L-1]
          Length = 269

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + F+ I +  +  P   +  +Y +L        S     F TP  +  +     L     
Sbjct: 72  QVFAEIMMALEAEPRDALGTVYNNL-----ELSSADKGQFFTPWPICQMMAEATLGGPKL 126

Query: 198 LFKESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +             +P CG G  +      +   G +++
Sbjct: 127 IQDLIACKGFVRAMEPACGAGATVIALAQTMRAQGINYQ 165


>gi|229076140|ref|ZP_04209108.1| hypothetical protein bcere0024_43370 [Bacillus cereus Rock4-18]
 gi|228707003|gb|EEL59208.1| hypothetical protein bcere0024_43370 [Bacillus cereus Rock4-18]
          Length = 324

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 79/271 (29%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 59  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGKTEI--- 114

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 115 ---TVLDPAIGTGNLMTTVFNSAKEELA-------MSGFGVEVDEVLIKLALVNANLQKH 164

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G       +    E+K     
Sbjct: 165 GIEFFHQDGLAPLYI------------DPVDAVVSDLPIG---YYPNEISASEYKLKADQ 209

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                                 +       GG    ++ +    + +A    + I+    
Sbjct: 210 GMSYAHH-----------LFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 254

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 255 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 285


>gi|197294201|ref|YP_001798742.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853528|emb|CAM11378.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 76/282 (26%), Gaps = 68/282 (24%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  +      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKATIYTPSWLSQFLYNILSPQIQRGL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I+ LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPEISSIIGLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER--------RGKVQLINATDLWTS 433
                + + I +    +          +     IN+++ +  
Sbjct: 183 NVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIP 224


>gi|307637150|gb|ADN79600.1| adenine specific DNA-methyltransferase [Helicobacter pylori 908]
 gi|325995741|gb|ADZ51146.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325997337|gb|ADZ49545.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 84/251 (33%), Gaps = 30/251 (11%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLINVSHSSVRNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       +E+  ++     + + YE       +        + TP  +V   
Sbjct: 68  LKGAHNHQEL-ILKYLEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++     T  DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDTTQA-----TFCDPAVGSGNFVMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     +       +R++   R D    +Q+     K      +F    +NPP+GKK+ +
Sbjct: 167 DAFAVTLTK-----KRIKERYRLDCPNIMQKDFLSLKHAP---QFDCIFTNPPWGKKYNQ 218

Query: 308 DKDAVEKEHKN 318
           ++    K+  N
Sbjct: 219 NQKENFKQRFN 229


>gi|239624277|ref|ZP_04667308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520663|gb|EEQ60529.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 2585

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   V+      +              I  + +P+CG G F    
Sbjct: 1361 EEYAAARGSTLNAHYTSPTVIRAIYETV--------GRMGFEIGNILEPSCGVGNFF--- 1409

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1410 -------GMLPEEMRNSRLYGVELDSISGRIAKQLYPKADITVAGFETTDRRDF------ 1456

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+   +DK                         +   
Sbjct: 1457 -------------YDLAIGNVPFGQYQVRDK--------------------AYDKLNFSI 1483

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +  ++ LP D F
Sbjct: 1484 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAF 1538

Query: 399  ---FRTNIATYLWILSNR 413
                   + + +  L  R
Sbjct: 1539 KKNAGAEVVSDIIFLQKR 1556


>gi|296127563|ref|YP_003634815.1| type IIS restriction endonuclease [Brachyspira murdochii DSM 12563]
 gi|296019379|gb|ADG72616.1| type IIS restriction endonuclease, putative [Brachyspira murdochii
           DSM 12563]
          Length = 1076

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 104/313 (33%), Gaps = 31/313 (9%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            + F   + NPP+ +  +     +++ ++N     F       S G          K   
Sbjct: 651 DRDFDIVIGNPPYIQ-LQGMAKGLKEMYQNAGYESF------KSTGD--IYQLFYEKCLG 701

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  G A+++ S+  +  G   S     R +  +N  +  I+ L    F    +   + 
Sbjct: 702 LLSDDGVASLITSNKWMRAGYGAST----REYFYKNADVFRIIDLGAGRFESATVDVNII 757

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR------ENG 462
             S  K +  RG+         +  +   G  + I + +    + +           E  
Sbjct: 758 FYSKTKEKHTRGE-------RSFEGVTYSGSLKEIASAEFDAVVSEAGREWVIMSGLERS 810

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F+++  ++      IK+   ++  +  ++  +   E      K           +L+  
Sbjct: 811 IFNKISRHKALKDWDIKINYGIKTGY--NEAFIIDEETKDRLIKEDKKSAELIKPLLRGR 868

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA-DPVTDVNGEW 581
             + Y Y +   ++  +  + +    K KA K ++ +F     +   +     T+     
Sbjct: 869 DIKRYSYDFNNLYLICTFPALKLNIDKYKAIKKYLESFGKRLEQSGEKGCRKKTNNKWFE 928

Query: 582 IPDT--NLTEYEN 592
             DT     ++EN
Sbjct: 929 TQDTISYYKDFEN 941


>gi|257451832|ref|ZP_05617131.1| helicase [Fusobacterium sp. 3_1_5R]
 gi|317058387|ref|ZP_07922872.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684063|gb|EFS20898.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 2244

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 51/236 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +++D       +       + +P+ G G F+          G+          +G EL+
Sbjct: 710 KIVIDGVYKTLSDMGFEHGNILEPSMGIGNFI----------GNLPDEMNQSKFYGVELD 759

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             +  +         L         K  ++        F    F   + N PFG+    D
Sbjct: 760 SISGRIAK-------LLYPKSNIQVKGFEETD------FANNFFDVAIGNVPFGEFKVND 806

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +D                     +  + L   +   K       GG  A + SS  +   
Sbjct: 807 RD--------------------YNKNNFLIHDYFFVKSIDKVRNGGVIAFITSSGTM--- 843

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
                +  IR+++         + LP D F     T + + +  L  R +   R +
Sbjct: 844 --DKKDESIRKYINARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDSILERDE 897


>gi|121582883|ref|YP_973325.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
 gi|120596145|gb|ABM39583.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
          Length = 1649

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 76/253 (30%), Gaps = 56/253 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T  +V+     L+        ++       + +P+ GTG F   A
Sbjct: 122 KSYAQARDSVLTAYYTEPEVIQAMWGLV--------QKMGFKGGKVLEPSAGTGNF-IGA 172

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           M       S             E +  +  +C A       +SD                
Sbjct: 173 MPVALREAS--------TITMVEPDSVSATICKA----LYADSDTLVHTCGMEIAP---- 216

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   + N PFG     D              +F      I D +      +A
Sbjct: 217 ---LRSESFDVVIGNVPFGNYRVHD-------------SKFDCMKLVIHDYA------IA 254

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--- 400
             L+L   GG  A I         G     +S  R ++ E   +   + LP+  F R   
Sbjct: 255 KSLDLVRAGGIVAVIT------STGTMDKPKSNFREYIAERADLVTAIRLPSGAFTRLGE 308

Query: 401 TNIATYLWILSNR 413
           T++AT + +L  +
Sbjct: 309 TDVATDILVLRKK 321


>gi|83646527|ref|YP_434962.1| type II restriction enzyme, methylase subunit [Hahella chejuensis
           KCTC 2396]
 gi|83634570|gb|ABC30537.1| Type II restriction enzyme, methylase subunit [Hahella chejuensis
           KCTC 2396]
          Length = 1414

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 55/171 (32%), Gaps = 38/171 (22%)

Query: 149 TVPDRVMSNIYEHLIR-----------RF----GSEVSEGAEDFMTP----RDVVHLATA 189
            +      ++YE L+            RF         +    + TP    ++++  A  
Sbjct: 438 DMDTTEFGSVYESLLELMPQINVNGVWRFCLIKSKGDKKELGTYYTPENLVQELIKSALK 497

Query: 190 LLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----- 241
            +++        +P    +  T+ DP CG+G  L  A   +A     +            
Sbjct: 498 PVIENRLKNIGGNPSDKILSITICDPACGSGHCLIAAAKCLAAELVRYDTQSRNSELQHR 557

Query: 242 ----------PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
                      +G ++      +C   + +  +E   P   L  +I+ G++
Sbjct: 558 IAMRKVIQKCIYGVDINNMAIELCKIALWLESVEPGKPLSFLDSHIKHGNS 608


>gi|49476200|ref|YP_034241.1| hypothetical protein BH15450 [Bartonella henselae str. Houston-1]
 gi|49239008|emb|CAF28308.1| hypothetical protein BH15450 [Bartonella henselae str. Houston-1]
          Length = 1653

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 95/347 (27%), Gaps = 50/347 (14%)

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            S   + + +  D ++     +     Y   K  +     P      ++  +Y+   R   
Sbjct: 808  SRAMQRMLDVLDEANLDKESKDLEKFYASVKLRASGITDPQAKQRLII-ELYDKFFRYAF 866

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNH 226
                E      TP ++V      + D   A F ++ G     + DP  GTG F+T  +  
Sbjct: 867  PRTVEKLGIVYTPVEIVDFILRSVNDVLQAEFGQTLGAPGIHIMDPFTGTGTFITRLLQS 926

Query: 227  VADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLES------------------ 266
                    K       H  E+    + +    +      L                    
Sbjct: 927  GLITPEEMKHKFCHEIHANEIVLLAYYIAAINIETTYHGLIGGDYVPFEGICLTDTFQLY 986

Query: 267  DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRF 324
            +  +DL  ++   ++  +    G      + NPP+  G+K E D        K     R 
Sbjct: 987  EQEKDLISDLLVDNSTRRSRQKGLDIRVIVGNPPYSSGQKSENDNAKNIGYPKLDRCIRE 1046

Query: 325  GPGLPKIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE----- 376
                   +   +G     +             G    V ++  +          E     
Sbjct: 1047 TYAAQSKASNVNGLYDSYIRAIRWASDRIKDCGVIGFVTNAGFINGYSTNGLRKELSKEF 1106

Query: 377  -----------IRRWLLENDLIEAIVALPTDLFFR---TNIATYLWI 409
                       IR+ ++             ++F     T IA  L++
Sbjct: 1107 SNIYVLNLRGDIRKNMMSKGR----AQEGQNVFGSGSMTGIAVTLFV 1149


>gi|329113910|ref|ZP_08242678.1| Hypothetical protein APO_0684 [Acetobacter pomorum DM001]
 gi|326696776|gb|EGE48449.1| Hypothetical protein APO_0684 [Acetobacter pomorum DM001]
          Length = 1708

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 52/229 (22%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L++     + +       ++ +P CGTG F+              K+   +   G E +
Sbjct: 152 ELIVHSLWDMAQRMGFRGGSVLEPGCGTGVFI---------AARPEKLEGKIAFTGIEND 202

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P +  +              +   ++ I+        L  G  +   + NPPF  +    
Sbjct: 203 PISARIAR------------KLYPNQWIRSEDFTRAQLPRG--YDLAIGNPPFSNRTVHG 248

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELPPNGGGRAAIVLSSSPLFN 367
           +D +EK                      L L      +       GG A  V        
Sbjct: 249 RDGLEK--------------------QGLSLHDFFIARSIDALRPGGIALFVT-----SR 283

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                 + + RR + E+  +   V LP         T++   +     R
Sbjct: 284 YTLDKTDPKARRIMGESADLLGAVRLPEGAMRDDAGTDVVVDILAFRKR 332


>gi|319901638|ref|YP_004161366.1| hypothetical protein Bache_1796 [Bacteroides helcogenes P 36-108]
 gi|319416669|gb|ADV43780.1| hypothetical protein Bache_1796 [Bacteroides helcogenes P 36-108]
          Length = 589

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 93/301 (30%), Gaps = 33/301 (10%)

Query: 127 LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++K    + + + F       HP  +    M +++E +I               TP+ V 
Sbjct: 47  IDKEDEDFDLLQEFVSKIHHFHPAPMTIEDMISLFEFVIS---PADRIVTGAVYTPKYVR 103

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPH 243
                  L+       +       + D  CG GGFL D    + +              +
Sbjct: 104 ENIIETCLNTIPNEHIQHI----RVADIACGCGGFLMDVALFLHNNTGRAFYDIYQKSVY 159

Query: 244 G---QELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           G   QE   E   + ++ + +    + D   ++ +        ++     K F   + NP
Sbjct: 160 GIDIQEYSVERTKILLSLLALLHGEDLDFDFNVLQANTLDFNTAEWNQDYKHFDVIVGNP 219

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+     ++ DA  KE            +       +              N GGR   +
Sbjct: 220 PY--VCSRNVDATTKEKM------LQYEVCLSGHPDLYIPFFQIAT--EMLNDGGRLGFI 269

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---PTDLFFRTNIATYLWILSNRKTE 416
             +S + +         +R +      I  I  L      +F + +  T L+ L+  +  
Sbjct: 270 TMNSFIRSVNG----RAVRNYFSRG--IHDISILDFRGYQVFQKKSTYTCLFFLTKNQAS 323

Query: 417 E 417
           +
Sbjct: 324 D 324


>gi|225861864|ref|YP_002743373.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229609|ref|ZP_06963290.1| adenine-specific DNA methylase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298501543|ref|YP_003723483.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727528|gb|ACO23379.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237138|gb|ADI68269.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389038|gb|EGE87385.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA04375]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEMDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|309379554|emb|CBX21920.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 954

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 76/256 (29%), Gaps = 51/256 (19%)

Query: 111 AKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---- 163
            +  F   +   FS  I        + +       I+     +   +   ++++++    
Sbjct: 278 FRLKFPYINGKLFSDGIDEFVFNASMRRTLLECCEIDWSL--ISPDIFGTLFQNIMENAD 335

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE------------SPGMIR 207
                +  +   E    + + +++      L LD   A  ++            +     
Sbjct: 336 APGGGKKSAHRRELGAHYTSEKNIKRAIAPLFLDRLKAELEQAAGDPKKLARYITRLQTL 395

Query: 208 TLYDPTCGTGGFLTDAMNHVA--------------DCGSHHKIPPILVPHGQELEPETHA 253
            + DP CG G FL  A   +                         +   HG E++P    
Sbjct: 396 QILDPACGCGNFLIVAYREIRLLEMQAIRQLARIPGAQQMQSQCDVHQFHGIEIDPAAVE 455

Query: 254 VCVAGMLI-----RRLESDPRRDLSKNIQQG-------STLSKDLFTGKRFHYCLSNPPF 301
           +    M +      RL  D  + +    +          T   D  + +   Y + NPPF
Sbjct: 456 IATVAMWLTDHQMNRLYQDGYKRIPLAHKADIRCANALQTDWADTISPQNLDYIVGNPPF 515

Query: 302 GKKWEKDKDAVEKEHK 317
             K E++ +  +   K
Sbjct: 516 LGKKEQNAEQKKDMEK 531


>gi|253681420|ref|ZP_04862217.1| modification methylase family protein [Clostridium botulinum D str.
           1873]
 gi|253561132|gb|EES90584.1| modification methylase family protein [Clostridium botulinum D str.
           1873]
          Length = 590

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 42/291 (14%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +     S+ Y  L  R   E  +      TP+++ +     ++  +D +          
Sbjct: 37  NIGKEKFSDTYMDLKER---EKIKEKGIVYTPKEIANYIVENVIFKEDIINNPYI----K 89

Query: 209 LYDPTCGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQEL-----EPETHAVCVAGM 259
           + DP CG G  +      +     +          +    Q++     +   +   +  +
Sbjct: 90  ILDPACGCGDIIIVCYEKLKTIYEENLKFINEVNGINLKKQDIPKHIVKNNLYGFDIDEI 149

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            I+ L  D  +      +        L     ++F+  + NPP+         +++KE+ 
Sbjct: 150 AIKILAVDLFKASGYFYENNFKKQDFLLEKLSEKFNIIVGNPPYVGH-----KSIDKEYS 204

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 F        D S  F     N L    +  G+ + + S    +   + SGE E+
Sbjct: 205 KKLKINFKEIYKDKGDISYCFFQQAINNL----SKKGKLSFITSR---YFIESPSGE-EL 256

Query: 378 RRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNRKTEERRGKV 422
           R+ L E   +  IV      F+         +   +  L+N +  +   +V
Sbjct: 257 RKILKEVCSLYKIVD-----FYGIRPFKRIGVDPVIIFLTNEQNIQEEIQV 302


>gi|190410025|ref|YP_001965549.1| probable DNA methylase [Sinorhizobium meliloti]
 gi|125631055|gb|ABN47056.1| probable DNA methylase [Sinorhizobium meliloti SM11]
          Length = 941

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 69/271 (25%), Gaps = 58/271 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S          TP  ++            A  +        + +P  GTG F    
Sbjct: 138 SDYASLARCTQYAHFTPEFIIRAI--------WAGIERLGWRGGRVLEPGIGTGLFPALM 189

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H  +              G EL+P T  +                     +       
Sbjct: 190 PEHYREA---------SYVTGIELDPVTARIVRL------------LQPKARVINRDFTR 228

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL     +   + NPPF  +       V  +     LG        +    +L      
Sbjct: 229 TDLAPI--YDLAIGNPPFSDR------TVRSDRAYRSLGLRLHDYFIVRSIDLL------ 274

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                    G  A  V S   +      +     R  + ++  + A + LP   F     
Sbjct: 275 -------KPGALAVFVTSHGTMDKIDTTA-----REHIAKSADLIAAIRLPESSFRHDAG 322

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLW 431
           T++   L     RK  E  G    ++  ++ 
Sbjct: 323 TDVVVDLLFFRKRKIGEAEGDQMWLDVDEVR 353


>gi|87307448|ref|ZP_01089592.1| hypothetical protein DSM3645_28042 [Blastopirellula marina DSM
           3645]
 gi|87289618|gb|EAQ81508.1| hypothetical protein DSM3645_28042 [Blastopirellula marina DSM
           3645]
          Length = 549

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 64/235 (27%), Gaps = 56/235 (23%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           ++    DA+ +       T+ +P CG G FL                       G EL+ 
Sbjct: 133 VIGGIHDAIRRLGISDEATILEPGCGIGNFL-------------GYGKSDQRFIGVELDS 179

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +  A                ++  +  +              + N PF        
Sbjct: 180 ISGRIAKA-------------IYPQHDIRIESFHDTKLPHAGIDAVIGNVPFSD------ 220

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++ +H   +         K  D                   GG  A+V S   L    
Sbjct: 221 --LKLDHHGQKFSLHDYFFAKSVDA---------------LKPGGVLALVTSHFTLDKQN 263

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSNRKTEERRGKV 422
           A      IR +L +       + LP+D F    T + T +  L  R   E    V
Sbjct: 264 A-----AIREYLADKVDFVGAIRLPSDAFKREGTAVVTDIVFLRKRAPGEPAHHV 313


>gi|71908162|ref|YP_285749.1| helicase, C-terminal [Dechloromonas aromatica RCB]
 gi|71847783|gb|AAZ47279.1| Helicase, C-terminal [Dechloromonas aromatica RCB]
          Length = 1669

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 74/257 (28%), Gaps = 55/257 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S  +       T   V+                        + +P  G G F+   
Sbjct: 160 EDYASGRASVNNSHYTEIHVIEAM--------WQAIHRFGFSGGRVLEPAAGIGHFIGTM 211

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A C               E++       ++G +++ L +    D+     + + L 
Sbjct: 212 PEDLAGC---------STVTAIEID------RLSGRILQALYASGGADVRIAPFEKTPLP 256

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           ++      F   + N PFGK    D+                     I +       +  
Sbjct: 257 ENW-----FDLVIGNVPFGKYQVADQ------------SNRAYAHYNIHN-------YFL 292

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--- 400
            +       GG   ++ SS  + + +       +R++L     +   + LP   F     
Sbjct: 293 GRAIDLVRPGGLVCLITSSHTMESRQET-----VRQYLASQAHLLGAIRLPKGAFAGIAA 347

Query: 401 TNIATYLWILSNRKTEE 417
           T + T +  L  R+  E
Sbjct: 348 TEVQTDILFLRKRQRSE 364


>gi|289617511|emb|CBI55746.1| unnamed protein product [Sordaria macrospora]
          Length = 459

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 23/174 (13%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL------EPETHAV--CV 256
             + +YDP  GTG F        A   +           G E         E + +  C+
Sbjct: 210 PGKLIYDPFVGTGSFPIACAQFGA--LTFGSDIDGRSIRGDEKKRTLRGNFEQYGLTSCL 267

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
            GM    L + P R          T   +   G+ F   + +PP+G +       V+   
Sbjct: 268 GGMFTADLTNTPIRKARLG-----TEKNNGVKGRIFDAVVCDPPYGVREGLKVLGVKDPE 322

Query: 317 K------NGELGRFGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K       G      P           +L L  +          GGR +  + +
Sbjct: 323 KCPWVIPKGMEMYKDPDFIPPRKPYSFLLMLDDILQFSAQTLVDGGRLSFWMPT 376


>gi|298369068|ref|ZP_06980386.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283071|gb|EFI24558.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 273

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   +L K+ + F  I+       + ++  IY  L        S+    + TP  +  + 
Sbjct: 90  KMPEILAKLVEKF--IKAGQSGTYEDILGEIYMLL-----DLGSQSKNQYFTPFYICRMM 142

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             ++ +      + +P +  ++ +P+CG+G  +      +   G  H
Sbjct: 143 AQIVGEGLADKLEGNPFV--SIMEPSCGSGANIIAFAETIRLKGFDH 187


>gi|283769151|ref|ZP_06342055.1| N-6 DNA Methylase [Bulleidia extructa W1219]
 gi|283104127|gb|EFC05506.1| N-6 DNA Methylase [Bulleidia extructa W1219]
          Length = 2908

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 114/386 (29%), Gaps = 72/386 (18%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
             RLE  LE     +    L      I+     K   ++F  T E     L  +   NN  
Sbjct: 1050 YRLESDLERVFQNLTYTKL---EKTIEEVEIKKTEAHNFKITEETLPEKLSPSERLNNNL 1106

Query: 102  SYIASFS--DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
              I+  +  ++ +   +    S+    L K      +   F       +   +   S + 
Sbjct: 1107 EVISMLNRVESGQRELD----STAQETLAKYVGWGGLADVFDE---SKEGQWEVARSFLK 1159

Query: 160  EHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E+L    + +        F TP+ V+        D       +       + +P+ G G 
Sbjct: 1160 ENLSPSEYEAARESTLTSFYTPKAVI--------DSVYKTLSDMGFKSGNILEPSMGVGN 1211

Query: 219  FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            F+          G+          +G EL+  +  +                   ++  Q
Sbjct: 1212 FI----------GNLPDEMKKSKFYGVELDSVSGRIGKL-------------LYPESEVQ 1248

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                 +  F+   F   + N PFG+    D++                     +  + L 
Sbjct: 1249 IKGFEETTFSNNFFDAVIGNVPFGEYKVNDRE--------------------YNKNNFLI 1288

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A + SS  +        +  +RR++         + LP D F
Sbjct: 1289 HDYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYIAARAEFLGAIRLPNDTF 1343

Query: 399  ---FRTNIATYLWILSNRKTEERRGK 421
                 T + + +  L  R +   R +
Sbjct: 1344 KGVAGTEVTSDIIFLKKRDSIRERDE 1369


>gi|38505536|ref|NP_942157.1| hypothetical protein ssl5001 [Synechocystis sp. PCC 6803]
 gi|38423560|dbj|BAD01771.1| unknown protein [Synechocystis sp. PCC 6803]
          Length = 59

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA 614
           E+  D NL + EN+     I  YF+REV PHV +A
Sbjct: 25  EYKTDANLRDTENIFLNNEICRYFLREVKPHVNNA 59


>gi|325853297|ref|ZP_08171337.1| hypothetical protein HMPREF9303_1178 [Prevotella denticola CRIS
           18C-A]
 gi|325484359|gb|EGC87285.1| hypothetical protein HMPREF9303_1178 [Prevotella denticola CRIS
           18C-A]
          Length = 1229

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            IR   DP+ G G F            +             E +  T  +  A   I   
Sbjct: 125 PIRRCLDPSAGMGAF------------TEIFATKAGTVDAMEKDLLTARISQA---IH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +      Q       +L    ++    SN PFG     D    ++E+  G+    
Sbjct: 168 --PYGQGNIIVRQAPFEAIGELEEKDKYDLITSNIPFG-----DFMVYDREYSKGKD--- 217

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                   + +     +   K       GG  A + S   L    +   E+ IRR+L++N
Sbjct: 218 ----ILKRESTRAIHNYFFVKGLDCIKEGGLLAFITSQGVL---DSPKNEA-IRRYLMQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
             + + + LP+ +F     T + + L +L  +  +E
Sbjct: 270 SQLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKE 305


>gi|212692341|ref|ZP_03300469.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
 gi|212665218|gb|EEB25790.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 109/384 (28%), Gaps = 78/384 (20%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V      +L          SP     + D  CG G F     NH+ +  +  
Sbjct: 71  GQFFTPHEVCRDMVDVL----------SPTSSEMILDMCCGMGNFF----NHLPNQHN-- 114

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G +++ +  AV                 L  +        +   + +RF  
Sbjct: 115 -------AYGFDIDSKAVAVAR--------------YLYPDAHIEKCDIQQYHSEQRFDA 153

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  K+         + +  +          ++    L ++   + ++       
Sbjct: 154 IIGNPPFNLKF---------DFRISQEYYIDKAYHLLNPAGFLMIIVPVSFMQNEFWEKS 204

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI---ATYLWILS 411
           R   V                                 L    F    +    T + +  
Sbjct: 205 RVGRVNEDFSFIGQT----------------------RLAPHAFTSVGVDNFNTKIMVFL 242

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            R    +  ++   NA +  +    + + ++      R   L + + RE  +  +  +  
Sbjct: 243 RR---SQHIEMNPYNAEEFVSMAELKERVKKAREMKHR---LRLDLMRETNRIDK-EELE 295

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y+  K +  L+    L+K     +     +R   P   +    + +   +++     
Sbjct: 296 HFEYKLAKYMYELKAHARLNKHIDKAVALVTKFRNQKPPENATNEQMKEWERKKLTTAKV 355

Query: 532 AESFVKESIKSNEAKTLKVKASKS 555
             +  K     N     +V   K+
Sbjct: 356 LATIRKYITSQNVVPRKEVALVKT 379


>gi|168484118|ref|ZP_02709070.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042596|gb|EDT50642.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC1873-00]
 gi|332199192|gb|EGJ13271.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA47368]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 88/255 (34%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +     +          G E++     +  +   +  L++           Q
Sbjct: 123 LGAIFLTSLTKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+          +    + +  +
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQ----------VASSQEHTYAY 210

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            + +   L+   +  G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 211 HLLMEQGLKYLKSD-GYAIFLAPSDLLTSPQSDL----LKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|307705717|ref|ZP_07642563.1| hypothetical protein SMSK597_1670 [Streptococcus mitis SK597]
 gi|307620731|gb|EFN99821.1| hypothetical protein SMSK597_1670 [Streptococcus mitis SK597]
          Length = 310

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVVSDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSDL----LKGWLKEEANLTAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|325981710|ref|YP_004294112.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nitrosomonas sp. AL212]
 gi|325531229|gb|ADZ25950.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nitrosomonas sp. AL212]
          Length = 278

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 69/225 (30%), Gaps = 44/225 (19%)

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPR 181
           +       L  +  + FS +      V  R+      +LI +  F     +  E  + PR
Sbjct: 37  LLTHPDQALPGQQFEKFSSL------VQQRIEGLPVAYLIGKRAFFDLTFKVTEAVLIPR 90

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
               L          AL          + D   G+G        H           P   
Sbjct: 91  PETELLVE------WALELIPSQKFCKVLDLGTGSGAIGISIAKH----------RPQSQ 134

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
               +L P    VC +         +     + N+ +G+    D  +G++F   +SNPP+
Sbjct: 135 VIAVDLSPAAIDVCQSN-------VEILEVANLNVIRGNWF--DELSGEKFDLIVSNPPY 185

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLAN 344
                    A +  H      RF P    +S G   M  + H+ N
Sbjct: 186 V--------AEDDPHLQQGDLRFEP-EMALSAGEHGMACITHIIN 221


>gi|172039713|ref|YP_001799427.1| putative methylase [Corynebacterium urealyticum DSM 7109]
 gi|171851017|emb|CAQ03993.1| putative methylase [Corynebacterium urealyticum DSM 7109]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 82/305 (26%), Gaps = 63/305 (20%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKIC 137
           + TSE   S LG+     N          ++ A F   +   F+ T+        +    
Sbjct: 252 HTTSENLGSQLGALFEVLNTPEAQRRRVPDSMARFPYINGAIFAETMPTQFFTPEMRDAL 311

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV-------------- 183
              +        +   +  ++++  + +      +  E + + +++              
Sbjct: 312 --LNACRFRWTNISPALFGSMFQ--LVKSKEARRDDGEHYTSEKNILKTIGPLFLDELRA 367

Query: 184 --VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
               L  A                     DP CG+G FL  A   +    +         
Sbjct: 368 EADRLIAAKSTPVAKLRAFRDSLADMVFCDPACGSGNFLIVAYRELRKIETDVIVAIRER 427

Query: 234 ------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR------------ 269
                        +   I   +G EL      +    M +   +++              
Sbjct: 428 EGTTDLALDISWEQKLSIGQFYGIELNWWPARIAETAMFLVDHQANRELADRVGLAPDRL 487

Query: 270 -RDLSKNIQQGSTLSKDL----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGEL 321
              ++ +I+  + L+ D            Y   NPPF  ++ K  +  E   +   N   
Sbjct: 488 PISITAHIEHANALAVDWLEILPEAAGMTYIFGNPPFIGQYTKTSEQTEDMRRVWGNDYD 547

Query: 322 GRFGP 326
           G    
Sbjct: 548 GYLDY 552


>gi|308513269|ref|YP_003933665.1| hypothetical protein HMPREF0868_0152 [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|307346975|gb|ADN43952.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3
          str. UPII9-5]
          Length = 59

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 13/30 (43%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVIL 36
            + L + +W+    L G  + + +   +L
Sbjct: 4  KKSELYSILWEACNKLRGGVEPSRYKDYVL 33


>gi|291524354|emb|CBK89941.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2929

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 69/258 (26%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   V+      +                 + +P+CG G F    
Sbjct: 1372 EEYAAARGSTLNAHYTSPTVIRAIYETV--------GRMGFETGNILEPSCGVGNFF--- 1420

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1421 -------GMLPEEMRNSRLYGVELDSISGRIAKQLYPKADITVAGFETIDRRDF------ 1467

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+   +DK                         +   
Sbjct: 1468 -------------YDLAIGNVPFGQYQVRDK--------------------AYDKLNFSI 1494

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +  ++ LP D F
Sbjct: 1495 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAF 1549

Query: 399  ---FRTNIATYLWILSNR 413
                   + + +  L  R
Sbjct: 1550 KKNAGAEVVSDIIFLQKR 1567


>gi|67920387|ref|ZP_00513907.1| type I restriction enzym, M protein [Crocosphaera watsonii WH 8501]
 gi|67857871|gb|EAM53110.1| type I restriction enzym, M protein [Crocosphaera watsonii WH 8501]
          Length = 77

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           + HG + +     +    M++  ++        K   + S   K  +  + F   L+NPP
Sbjct: 1   MFHGFDFDGTMLRIGSMNMMLHGIQD------PKIEAKDSLSEKSGYVDEAFSLILANPP 54

Query: 301 FGKKWEKD 308
           F    EK 
Sbjct: 55  FKGSIEKS 62


>gi|254435800|ref|ZP_05049307.1| methyltransferase, HemK family [Nitrosococcus oceani AFC27]
 gi|207088911|gb|EDZ66183.1| methyltransferase, HemK family [Nitrosococcus oceani AFC27]
          Length = 303

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 45/153 (29%), Gaps = 25/153 (16%)

Query: 166 FGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F        E  + PR  +  L                P  I +L D   G+G     A 
Sbjct: 100 FAGLSFYVDERVLIPRSPLAELIAQRFAPF------AFPESIHSLLDLCTGSGCIAIAAA 153

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           +   +                ++  E  AV    +    LE+             S+   
Sbjct: 154 HAFPEA----------QVDATDISEEALAVARMNIERHGLEAQVHAF--------SSSLF 195

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               G+R+   +SNPP+  + E    A E  H+
Sbjct: 196 QKLGGRRYDLIVSNPPYVGQTELAALAREYHHE 228


>gi|148985982|ref|ZP_01819035.1| hypothetical protein CGSSp3BS71_05054 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147921955|gb|EDK73080.1| hypothetical protein CGSSp3BS71_05054 [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800800|emb|CBW33452.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +     +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLTKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSDL----LKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|291166691|gb|EFE28737.1| superfamily II DNA and RNA helicase [Filifactor alocis ATCC 35896]
          Length = 2944

 Score = 44.4 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 115/385 (29%), Gaps = 66/385 (17%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
             RLE  LE     +  K       +ID ++  +K+  ++F  T E     L  +     L
Sbjct: 1082 YRLESDLERIFENLTYKKAKDTIQDIDEKAEKLKIEAHNFKITEEILPEKLTPS---ERL 1138

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
               + + S   +      +  +T   +    + +         +   +       + + E
Sbjct: 1139 NQNLEAISMLKRVESGQRELDNTAQEVLAKYVGWGGLSEV--FDESREGQWKEARAFLKE 1196

Query: 161  HLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L    + +        F TP+ V+            +           + +P+ G G F
Sbjct: 1197 NLSSSEYEAAKESTLTAFYTPKTVIDSI--------YSTLSGMGFKNGNILEPSMGIGNF 1248

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +          GS          +G EL+  +  +                   ++  Q 
Sbjct: 1249 I----------GSLPDEMSSSKFYGVELDSLSGRIGKL-------------LYPESDIQI 1285

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              L +  F+   F   + N PFG+    D++                     +  + L  
Sbjct: 1286 KGLEETSFSNNFFDAVIGNVPFGEYKVNDRE--------------------YNKNNFLIH 1325

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A + SS  +        +  +RR+L         + LP D F 
Sbjct: 1326 DYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFK 1380

Query: 399  --FRTNIATYLWILSNRKTEERRGK 421
                T + + +  L  R +   R +
Sbjct: 1381 GVAGTEVTSDIIFLKKRDSIRERDE 1405


>gi|218768566|ref|YP_002343078.1| hypothetical protein NMA1791 [Neisseria meningitidis Z2491]
 gi|121052574|emb|CAM08914.1| hypothetical protein NMA1791 [Neisseria meningitidis Z2491]
          Length = 803

 Score = 44.4 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 69/326 (21%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           G ++  +    I     L   + +    R+ + + +L       D         + F NT
Sbjct: 49  GIYEEHELRLFITRLLFLFFADDSAVFRRNYLFQDFLE-NCKEADTLGDKLNQLFEFLNT 107

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            +   S   S   +         F +  +     FDF++      K       C NF   
Sbjct: 108 PDQKRSKTQSEKFKGFEYVNGGLFKERLRT----FDFTA------KQHRALIDCGNFDWR 157

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-------DD 196
            + P+     +   +++ ++     E  E    +    ++  +   L L+          
Sbjct: 158 NISPE-----IFGTLFQSVMD--AQERREAGAHYTEAANIDKVINGLFLENLRAEFEAVK 210

Query: 197 ALFKESPGMIRTLY---------DPTCGTGGFLTDAMNHVADCGSHHKIP---------- 237
           AL ++    +   Y         DP CG G FL  A + +                    
Sbjct: 211 ALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKADGLF 270

Query: 238 -------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ------------- 277
                   +   HG E++     +    M ++  + + R  +  + +             
Sbjct: 271 DSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAE 330

Query: 278 --QGSTLSKDLFTGKRFHYCLSNPPF 301
               ++L       +   Y   NPPF
Sbjct: 331 IIHANSLRTPW---QAADYIFGNPPF 353


>gi|291530902|emb|CBK96487.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2598

 Score = 44.4 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 50/220 (22%)

Query: 197  ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
               K        + DP+ GTG F               ++      +G EL+  +  +  
Sbjct: 1109 DGLKSIGFDGGNILDPSAGTGNFF---------GAMPVEMREKSKLYGVELDSVSARIAK 1159

Query: 257  AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                        +   S NI +G    K +     +   +SN PFG+             
Sbjct: 1160 ------------QLYQSANITEG-AYEKRVLNDNFYDAAISNVPFGQ------------- 1193

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                   F     +    ++    +   K       GG  A + +S  L    +     +
Sbjct: 1194 -------FKVHDKRYDSLNLNIHDYFFAKSLDKVRPGGVIAFITTSGTLDKSNS-----K 1241

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
             R+++ E   +   V LP   F     T + + +  L  R
Sbjct: 1242 FRKYMAERAELLGAVRLPNTAFKVVAGTEVTSDIIFLQKR 1281


>gi|257893675|ref|ZP_05673328.1| type I restriction-modification system methylation subunit
          [Enterococcus faecium 1,231,408]
 gi|257830054|gb|EEV56661.1| type I restriction-modification system methylation subunit
          [Enterococcus faecium 1,231,408]
          Length = 115

 Score = 44.4 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 4/40 (10%), Positives = 13/40 (32%)

Query: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
             +++   +L     + L   L      + ++ L    +
Sbjct: 1  MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDT 40


>gi|315033300|gb|EFT45232.1| N-6 DNA Methylase [Enterococcus faecalis TX0017]
          Length = 335

 Score = 44.4 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 122/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E G+      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERGKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|302865793|ref|YP_003834430.1| hypothetical protein Micau_1292 [Micromonospora aurantiaca ATCC
           27029]
 gi|302568652|gb|ADL44854.1| hypothetical protein Micau_1292 [Micromonospora aurantiaca ATCC
           27029]
          Length = 1174

 Score = 44.4 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 62/478 (12%), Positives = 133/478 (27%), Gaps = 93/478 (19%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           TE   +  +   ++    +              +L    +R  E              L 
Sbjct: 40  TEARRTGGTFETWLDDVVDQ---AAVAW-----VLGCVFVRFCEDN-------ELVDPLW 84

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFD 119
            GG        V   G +  +  ++ +      +        +Y+       K     FD
Sbjct: 85  IGGPEP-----VAPVGRAMQHRQQHLIDNPRHNDREWLREAFTYLRGLRATGKI----FD 135

Query: 120 FSSTIARLEKAGLLYKICKNF-----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + + R + +G   +    F       + L  D +  R + ++Y+ L     +   +  
Sbjct: 136 EHNPVWRFDISGAAAEKLSEFFRRGPGLVSLRVDDLNTRFLGDLYQDL----STHAKKTY 191

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TP  V         +P     +E      ++ DPTCG+G FL  A   +       
Sbjct: 192 ALLQTPDFVEEFILDRTFEP---AVREFGLPETSVIDPTCGSGHFLLGAFGQLVRKWRER 248

Query: 235 KIPPIL---------VPHGQELEPETHAVCVAGMLIRRL--------------------E 265
           +    +            G ++ P   A+    +LI  +                     
Sbjct: 249 EPATDIRVLVERALGQVTGVDINPFAVAIARFRLLIAAMRECGLTSLERTPSWPVRVATG 308

Query: 266 SDPRRDLSKNIQQGSTLSK------------------DLFTGKRFHYCLSNPPFGKKWEK 307
               +   K+  QG  ++                   D     ++   + NPP+    +K
Sbjct: 309 DSLLQWGRKSRHQGDLIAMLEGQNAFAYAAEDADVLADYLREGQYTVVVGNPPYITVADK 368

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            ++ + ++       R        +         LA + +    G G    +  ++ +  
Sbjct: 369 ARNQLYRDIYPDVCHRQYALTVPFAK----RFFDLARQSDEHGEGAGHVGQITGNAFMKR 424

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                G+  I  +      + AIV             T + +    +   R   +++I
Sbjct: 425 ---EFGKKLIEDYFAHQVELTAIVDTSGAYIPGHGTPTAILV-GRSRFRRRAPNIRII 478


>gi|172036682|ref|YP_001803183.1| hypothetical protein cce_1767 [Cyanothece sp. ATCC 51142]
 gi|171698136|gb|ACB51117.1| hypothetical protein cce_1767 [Cyanothece sp. ATCC 51142]
          Length = 517

 Score = 44.4 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 67/295 (22%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  V  + T  + +             +T+ DP  G G F         + 
Sbjct: 20  RKEYGQFFTPSLVAKMMTKWVTENKP----------QTILDPAFGLGVFY--------EE 61

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S  K+         E++           ++  L++    +    + Q    S+  +   
Sbjct: 62  ISQIKLQYQWHFTAYEIDDN---------ILSYLDNIENNNNITILNQDYLASEINY--- 109

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELP 349
            +   + NPP+     + +  + +     ++  + G  L   S+ + +FL+    +L   
Sbjct: 110 -YDAIICNPPY----MRFQKFINRHDILPKIEQQIGKKLGGYSNIASIFLIKALQQL--- 161

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYL 407
            N  GR A +L       G       EI++ L+EN L++ I+      D+F        +
Sbjct: 162 -NLNGRLAFILPFEFFNTGYG----KEIKQTLIENYLLKQIIIFANEKDIFPDATTTICI 216

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI--YVSRE 460
            +  N                     ++ + K   I N  + ++I +I  Y  R+
Sbjct: 217 LLCQND-------------------QLKQDIKITNINNTQEIKEIANISNYYHRQ 252


>gi|77166384|ref|YP_344909.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Nitrosococcus oceani ATCC 19707]
 gi|76884698|gb|ABA59379.1| [LSU ribosomal protein L3P]-glutamine N5-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
          Length = 299

 Score = 44.4 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 45/153 (29%), Gaps = 25/153 (16%)

Query: 166 FGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F        E  + PR  +  L                P  I +L D   G+G     A 
Sbjct: 96  FAGLSFYVDERVLIPRSPLAELIAQRFAPF------AFPESIHSLLDLCTGSGCIAIAAA 149

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           +   +                ++  E  AV    +    LE+             S+   
Sbjct: 150 HAFPEA----------QVDATDISEEALAVARMNIERHGLEAQVHAF--------SSSLF 191

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               G+R+   +SNPP+  + E    A E  H+
Sbjct: 192 QKLGGRRYDLIVSNPPYVGQTELAALAREYHHE 224


>gi|213423394|ref|ZP_03356381.1| hypothetical protein Salmonentericaenterica_38422 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 272

 Score = 44.4 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 8/117 (6%)

Query: 117 DFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D DF +   R            + +  S + +  +  P   +  IY           +  
Sbjct: 161 DPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIY-----MISGLGNFH 215

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              + TP  V +    + L               T+ DP  G G  +      + + 
Sbjct: 216 NAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEA 272


>gi|310831386|ref|YP_003970029.1| putative DNA methyltransferase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386570|gb|ADO67430.1| putative DNA methyltransferase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 550

 Score = 44.4 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 100/292 (34%), Gaps = 38/292 (13%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + L   L      +++          D+++  + +  +     + +   +          
Sbjct: 227 KELIDKLLEDDEEIKKGIEKTKVDTEDIDTLSETSDKNDKEEKQINYMDILKHIIPLICL 286

Query: 102 SYIASFSDNAKAIF-----EDFDFSSTIARLEKA---GLLYKICKNFSGIE---LHPDTV 150
             I +   +   +F       + ++  I + +      +  KI K F  +    +  D  
Sbjct: 287 LTIHNKESSFVEMFKLIENNKYVYNILIDQTKSWWGKTIDSKIIKKFINVYIKYMKDDKE 346

Query: 151 PDRVMSNIYEHLIRRFGS--EVSEGAEDFMTPRDV-------VHLATALLLDPDDALFKE 201
            ++++  I +  ++   +  ++ E  + ++ P+++       V     L  +  D +  E
Sbjct: 347 TNQIIRTIKDLFMKNVNNSKQLGELIDKYLIPQELEKKSNAEVSTPFKLRQEMLDKMPIE 406

Query: 202 SPGMIRTLYDPTCGTGGFLTDAM--------NHVADCGSHHKIPPILVPHGQELEPETHA 253
                + +++P  G GGF+ D +          + D    +K       +  ++ P    
Sbjct: 407 FWKSKKKVFEPCAGKGGFIVDIIDRFMNGLKKTIPDEKKRYKTIVEKCLYFSDINPTNIF 466

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFG 302
           +C        L  DP  +   N  +G+T     K+ +    F   + NPP+ 
Sbjct: 467 ICK-------LLIDPYNEYKLNYNEGNTLELNIKEKWGIDYFDAVIGNPPYN 511


>gi|57506015|ref|ZP_00371938.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Campylobacter
            upsaliensis RM3195]
 gi|57015623|gb|EAL52414.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Campylobacter
            upsaliensis RM3195]
          Length = 1321

 Score = 44.4 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 17/197 (8%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT-ALLLDPDDALFKESPGMI 206
            D     ++ ++YE+L +    +  E      TP ++V     +L         K      
Sbjct: 818  DEAKQNLIKSLYENLFKAAFKKTQEKLGIVYTPIELVDFIIYSLEFVLKKHFDKSLSDKG 877

Query: 207  RTLYDPTCGTGGFLTDAMNH-VADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRR 263
              +YDP  GTG F+T  +   + D    HK    L     E+    + +    +  ++ +
Sbjct: 878  VNIYDPFTGTGTFITRLIQSGLLDKNLEHKYKNEL--WANEITLLGYYIAQINITAIMHQ 935

Query: 264  LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               +      + I   + L  D F             + + ++  K   E  +KN    +
Sbjct: 936  RLKELDPKKDEFILLDNLLFTDTFNT-----------YTQDFKGFKGQGELNYKNAYFAK 984

Query: 324  FGPGLPKISDGSMLFLM 340
                + ++       +M
Sbjct: 985  NYAKINELKKAEFKVIM 1001


>gi|295706878|ref|YP_003599953.1| hypothetical protein BMD_4780 [Bacillus megaterium DSM 319]
 gi|294804537|gb|ADF41603.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 330

 Score = 44.4 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 99/295 (33%), Gaps = 46/295 (15%)

Query: 120 FSSTIARLEKAGLLYKICKN-FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           F  TI + E   +  K  K  +  I L  D      +   Y+  I + G + +      M
Sbjct: 41  FQGTILQEELDEVTKKRLKKEYDSITL--DHFEKETIRKAYQLAILK-GMKEAVQPNHQM 97

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V    + L+        K       TL DP  G G  LT  +N  A    H     
Sbjct: 98  TPDAVGLFVSYLVGKFMAGKDK------YTLLDPAVGAGNLLTTILNTHAASIEH----- 146

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +G +++     +           ++ ++   +   Q S     LF        + +
Sbjct: 147 ---VYGVDVDDLLLQLTYVN-------ANLQKHGVQLFNQDSLQ--PLFID-PVDLVVCD 193

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            P G  +  + + V++     E G            +    + +   L    +GG   A+
Sbjct: 194 LPVG--YYPNDEGVKEYKVRAEEGH-----------TYAHHLFIEQSLRHVKDGGYVVAL 240

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           + ++  LF          +   L E  +++ I+ LP  +F +   A  + +L  +
Sbjct: 241 IPNN--LFESEQSHLLQPL---LKEEAIVQGIIQLPLSMFKQEQAAKSIMVLQKQ 290


>gi|240850369|ref|YP_002971763.1| helicase/methyltransferase [Bartonella grahamii as4aup]
 gi|240267492|gb|ACS51080.1| helicase/methyltransferase [Bartonella grahamii as4aup]
          Length = 1636

 Score = 44.4 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 79/286 (27%), Gaps = 28/286 (9%)

Query: 45   ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              A     +  +E       S  + ++   +A +        SL       ++N +   +
Sbjct: 761  SEAYRAFHAFHKELKNGLNDSIEEEDALEMLAQHLVTRPIFESLFDGNEFVSKNAISQAM 820

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                       +  +    +  LEK     K         +        ++  +YE    
Sbjct: 821  EKI----LRELDKMNIKEEVKDLEKFYQSVKE----DTEGIIETRAKQNLIIRLYEDFFT 872

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP ++V      + D  +  F +S      ++ DP  GTG F+T  
Sbjct: 873  KAFKKTTDKLGIVYTPIEIVDFILHSVNDVLEQEFGQSLSSRGVSILDPFTGTGTFITRL 932

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESDPRRDLSKNIQQ 278
            +          +          E+    + +    +      +   +  P   +      
Sbjct: 933  LQSGLIKPEDMEYKFRNEIKANEIVLLAYYIAAINIESTYHSLMEGDYIPFEGICLTDTF 992

Query: 279  GSTLSKDLFTGKRFH--------------YCLSNPPFGKKWEKDKD 310
                 KD FT   F                 + NPP+    +   D
Sbjct: 993  LMLEEKDFFTRYMFENSERCKKQQEADIQVIVGNPPYSVGQKNAND 1038


>gi|114777159|ref|ZP_01452170.1| adenine specific DNA methyltransferase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552304|gb|EAU54787.1| adenine specific DNA methyltransferase [Mariprofundus ferrooxydans
           PV-1]
          Length = 654

 Score = 44.4 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 109/402 (27%), Gaps = 105/402 (26%)

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +  L++F +         S   L  L +     +++  I +  DN   +F   D  + + 
Sbjct: 227 DDTLDTFSRQEAAELIPKSNPFLRKLFNHVAGADIDERIKTTVDNLADVFRATDVKALLK 286

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
              +A   +    +F                  YE  +  +  ++ +    + TP  VV 
Sbjct: 287 NFGRATQTHDPIIHF------------------YETFLAEYDPKLRKARGVWYTPEPVVS 328

Query: 186 LATALL-------LDPDDALFKESPGMIR---------------------------TLYD 211
                +           D L   S   I                             + D
Sbjct: 329 FIVRGVDEILKTEFALKDGLADTSKTTIEVQVQGAAISKGRNKGKPLIQKKEVHKVQVLD 388

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVC--VAGM 259
           P  GTG FL + +  + + G    +      +          G EL   ++A+      M
Sbjct: 389 PATGTGTFLAEVVKFIYN-GKFKAMQGAWSSYVDEHLIPRLNGFELLMASYAMAHLKLDM 447

Query: 260 LIRRLESDPRRDLSKN--------IQQGSTLS-------------KDLFTGKRFHYCLSN 298
           L+R       ++   N             T +               +         + N
Sbjct: 448 LLRDTGFVANKEQRLNIYLTNSLEEHHPDTGTLFSSWLSTEANEANHIKRDTPVMVVMGN 507

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML---------FLMHLANKLELP 349
           PP+  +     + + K  ++ +    G    K  +   +         +  H   K    
Sbjct: 508 PPYSGESANKGEWIMKLMEDYKKEPGGKEKLKERNPKWINDDYVKFMRYGQHFIEK---- 563

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
            NG G  A +     L           +R  LL+  D I  I
Sbjct: 564 -NGEGILAFINPHGFL----DNPTFRGMRWNLLKTYDKIYTI 600


>gi|72161128|ref|YP_288785.1| type II DNA modification enzyme [Thermobifida fusca YX]
 gi|71914860|gb|AAZ54762.1| putative type II DNA modification enzyme [Thermobifida fusca YX]
          Length = 1321

 Score = 44.4 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 35/153 (22%)

Query: 148 DTVPDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +    +  +YE L+               R       +    + TP  +V       L
Sbjct: 441 QHLDAEELGLVYESLLNLVPYTDPAVRVFELRSAAGNDRKTTGSYYTPSSLVETLLDSTL 500

Query: 193 DPDDALFKESPGMIR----TLYDPTCGTGGFLT------DAMNHVADCGSHHKIPPILV- 241
           DP      +          T+ DP CG+G FL            V + G     P  +  
Sbjct: 501 DPVIEEHAKRGVPDDLLKITVCDPACGSGHFLVAAARRIARAYAVLEAGDEEPTPDAISR 560

Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLE 265
                     +G +L P    +    + +  +E
Sbjct: 561 AMPKVVRHCIYGVDLNPLAVELTKVSLWLASVE 593


>gi|154243764|ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophicus Py2]
 gi|154162886|gb|ABS70101.1| DEAD-like helicase [Xanthobacter autotrophicus Py2]
          Length = 1417

 Score = 44.4 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 61/221 (27%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F       + D         +    G EL+P T  +         
Sbjct: 189 WRGGRVLEPGIGTGLFPALMPESLRD---------VSHVTGIELDPVTARIVRL------ 233

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     +L     F   + NPPF  +  +   A            
Sbjct: 234 ------LQPRARIIAGDFARTELPAN--FDLAIGNPPFSDRTVRSDRAYRSMGLRLHDY- 284

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                         F++   + L+     G  AA V S+  +      +     R  + +
Sbjct: 285 --------------FIVRAIDLLKP----GALAAFVTSAGTMDKADGSA-----REHIAK 321

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +  +   + LP   F     T++   L     RK  +  G 
Sbjct: 322 SADLVGAIRLPEGSFRASAGTDVVVDLLFFRKRKIGDAEGD 362


>gi|308174631|ref|YP_003921336.1| nucleic acid methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307607495|emb|CBI43866.1| putative nucleic acid methyltransferase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554557|gb|AEB25049.1| nucleic acid methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328912961|gb|AEB64557.1| putative nucleic acid methyltransferase [Bacillus amyloliquefaciens
           LL3]
          Length = 328

 Score = 44.4 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 40/214 (18%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGM 259
                 TL DP CGTG  L  A N ++D  +           G +++     +    A +
Sbjct: 114 GSQKGLTLLDPACGTGNLLLTAANQLSDKAAKS--------FGIDIDDVLLKIAYAQANL 165

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             + +E   +  L     +            +    + + P G  +  D+ A   E K  
Sbjct: 166 QEKEMELFCQDSLQPLFIE------------QADAVICDLPVG-YYPNDEGAEAFELKAD 212

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           E   F                    +       GG    ++ +    + ++     ++++
Sbjct: 213 EGHSFAH-------------HLFIEQSVKHTKPGGYLFFMIPNHLFDSAQSD----KLKQ 255

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           +L E   I A++ LP  LF     A  + IL  +
Sbjct: 256 FLAEKVYINALLQLPATLFKDEAQAKSILILQKK 289


>gi|217032483|ref|ZP_03437975.1| hypothetical protein HPB128_156g13 [Helicobacter pylori B128]
 gi|216945829|gb|EEC24450.1| hypothetical protein HPB128_156g13 [Helicobacter pylori B128]
          Length = 928

 Score = 44.4 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 58/481 (12%), Positives = 128/481 (26%), Gaps = 66/481 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 173 ELIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 232

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGML--------- 260
           P  GTG F+   ++      S   +           ++   ++ + +  +          
Sbjct: 233 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 292

Query: 261 IRRLESDPRRDLSKNIQQ--------------GSTLSKDLFTGKRFHYCLSNPPF--GKK 304
           ++  ++    D    +++               +   KD    +     + NPP+  G K
Sbjct: 293 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKDIKDTLANQNIRVIIGNPPYSAGAK 352

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKIS----DGSMLFLMHLANKLELPPNGGGRAAIVL 360
            E D +      K   L     G    S      +   L+             G    V+
Sbjct: 353 SENDNNQNLSHPKLERLVYEKYGKNSTSRSVGQTTRDTLIQSIRMASDVVKDKGVLGFVV 412

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LFFRTNIATY 406
           +   + +  A       R+ + +      ++ L  +              +F   + AT 
Sbjct: 413 NGGFIDSKSADG----FRKCVAKEFSHLYVLNLRGNQRTSGEVSKKEGGKIFDSGSRATI 468

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR--RQIL----DIYVSRE 460
             +   +        +   +  D         +    +N D     +I       ++++ 
Sbjct: 469 AIVFFVKDKSVSDNTIDYYDIGDYLKREEKLHRLANFLNLDAIPFEKITPNDKGDWINQR 528

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW---RKLSPLHQSFWLD 517
           N  F +++  +     +I          I D      +     W      + L QS    
Sbjct: 529 NDDFEKLIPLKRDKKLKI-------FDTIFDLNSNGVVSGRDPWVYNSSPNALMQSVQKC 581

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I                  K+  K  ++  L    +   I          D   + +   
Sbjct: 582 IDTYNADLKRFNARFREAFKQRTKGVKSGDLYKHLNDKEITTDKTKIAWTDGLKNHLIKN 641

Query: 578 N 578
            
Sbjct: 642 K 642


>gi|187778265|ref|ZP_02994738.1| hypothetical protein CLOSPO_01857 [Clostridium sporogenes ATCC
           15579]
 gi|187771890|gb|EDU35692.1| hypothetical protein CLOSPO_01857 [Clostridium sporogenes ATCC
           15579]
          Length = 576

 Score = 44.4 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 43/274 (15%)

Query: 159 YEHLIRRFGS--EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           YE++  ++    +  +      TP+++ +      +   D +          + DP+CG 
Sbjct: 40  YENISLKYYEIIKGKKETGVIYTPQEISNYMIENTISKKDIIN----NPFIKILDPSCGC 95

Query: 217 GGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD- 271
           G  L     ++     +          +    Q +      +    +    ++S   +  
Sbjct: 96  GNILIPCFFYLKNIFNENLQEINKKNNINLKEQYINQH---ILDNNLYGFDIDSIAIKIL 152

Query: 272 ------LSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                 L+      +   KD         F   + NPP+         +V+KE+      
Sbjct: 153 IIDLFYLTGYYNNNNFKKKDFLIEDINNNFDVYIGNPPYVGH-----KSVDKEYSMLLKE 207

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           ++G       D S  F ++  N      N   +   + S   + +         +R++L 
Sbjct: 208 KYGEIYKDKGDISYCFFINALNY----SNINSKITFITSRYFMESKSG----YNLRKYLK 259

Query: 383 ENDLIEAIVAL----PTDLFFRTNIATYLWILSN 412
           EN  +  I+      P   F    I   +  +  
Sbjct: 260 ENCNVYKILDFYGIRP---FKGAGIDPAIIFIDR 290


>gi|291530019|emb|CBK95604.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2877

 Score = 44.4 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 72/252 (28%), Gaps = 59/252 (23%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + S  +     F TP  V+      +        ++       + +P+CG G F+    
Sbjct: 1365 EYESARASTLTAFYTPPVVISSIYKAM--------EQMGFKEGNILEPSCGIGNFI---- 1412

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                  G           +G E++  +  +              ++   K         +
Sbjct: 1413 ------GMLPSSMQDSKIYGVEIDKISAGIA-------------QQLYQKTSIAAQPFEE 1453

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                   F   + N PFG     D+                    + +  + L   +   
Sbjct: 1454 ANIPDSFFDAVIGNVPFGDIRVNDR--------------------RYNKHNFLIHDYFFA 1493

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A++ S   +           +RR++ +   +   + LP + F     T
Sbjct: 1494 KSLDKLRPGGVMALITSKGTM-----DKENPAVRRYIAQRADLLGAIRLPNNTFKGNAGT 1548

Query: 402  NIATYLWILSNR 413
             + + + IL  R
Sbjct: 1549 EVVSDILILQKR 1560


>gi|225376798|ref|ZP_03754019.1| hypothetical protein ROSEINA2194_02440 [Roseburia inulinivorans DSM
            16841]
 gi|225211424|gb|EEG93778.1| hypothetical protein ROSEINA2194_02440 [Roseburia inulinivorans DSM
            16841]
          Length = 1851

 Score = 44.4 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 69/258 (26%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   V+      +                 + +P+CG G F    
Sbjct: 1388 EEYAAARGSTLNAHYTSPTVIRAIYETV--------GRMGFETGNILEPSCGVGNFF--- 1436

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1437 -------GMLPEEMRNSRLYGVELDSISGRIAKQLYPKADITVAGFETIDRRDF------ 1483

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+   +DK                         +   
Sbjct: 1484 -------------YDLAIGNVPFGQYQVRDK--------------------AYDKLNFSI 1510

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +  ++ LP D F
Sbjct: 1511 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAF 1565

Query: 399  ---FRTNIATYLWILSNR 413
                   + + +  L  R
Sbjct: 1566 KKNAGAEVVSDIIFLQKR 1583


>gi|300780277|ref|ZP_07090133.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300534387|gb|EFK55446.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 128

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 14/100 (14%)

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----------ENGK 463
           + +RR +  LI+A  L   +    +K R  +D+  ++I + + +            +   
Sbjct: 4   STDRRSQFLLIDARSLGHMV---DRKERTFSDEDIQKIANTFRTWRGRSSAEGKYEDVPG 60

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           F + +           +     + F   +     ++  I 
Sbjct: 61  FCKSVSLEEIREANYALTPGRYVGFAETEEDDEPIDEKIA 100


>gi|302502553|ref|XP_003013247.1| hypothetical protein ARB_00432 [Arthroderma benhamiae CBS 112371]
 gi|291176810|gb|EFE32607.1| hypothetical protein ARB_00432 [Arthroderma benhamiae CBS 112371]
          Length = 421

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 16/167 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E    T    +A      L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAVTCGSD--IDGRSFRGKEATSNTETGVIANFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---- 320
            S      +         +  L + + F   + +PP+G +        + + + GE    
Sbjct: 271 LSRFLDTFTS-----DLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMF 325

Query: 321 -----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  R     PK        L  + +         GR ++ + +
Sbjct: 326 QGVPSYKRENYIFPKRPYAFDAMLDDILDFAAQTLVVNGRISLWMPT 372


>gi|218442795|ref|YP_002381115.1| hypothetical protein PCC7424_5827 [Cyanothece sp. PCC 7424]
 gi|218175153|gb|ACK73885.1| hypothetical protein PCC7424_5827 [Cyanothece sp. PCC 7424]
          Length = 395

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 15/185 (8%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           +    EPT      +          ++     A     + S  ++ T GS        +Y
Sbjct: 99  IVEEREPTVPDFVIEQTLPDEPIPQIDFQYSPAAEQMLHESLNAIPTHGS-WQGWGAWTY 157

Query: 104 IASFSDNAKAIFEDFDFS---STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           I  F D     F   ++    S     E A +      + S +  +P+    +++ +I  
Sbjct: 158 IEYFLDWLLYGFGHPNYQQLPSERQGCEGASMRLYQLVDLSLLLFYPEDYFGKILPDI-- 215

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
                   +       + TP  V  + + +     D+        I+  Y+P  GTG  L
Sbjct: 216 -----CSKKAQRNQGFYPTPLVVSRMMSEMTFFDADS----KKERIKICYEPCVGTGAML 266

Query: 221 TDAMN 225
             A N
Sbjct: 267 LPASN 271


>gi|238486186|ref|XP_002374331.1| RNA methylase family UPF0020 protein [Aspergillus flavus NRRL3357]
 gi|83767965|dbj|BAE58104.1| unnamed protein product [Aspergillus oryzae]
 gi|220699210|gb|EED55549.1| RNA methylase family UPF0020 protein [Aspergillus flavus NRRL3357]
          Length = 456

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 92/355 (25%), Gaps = 66/355 (18%)

Query: 19  AEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
           A+         D F  V   FT+           + A+ +   +F     D    +K   
Sbjct: 80  ADVRRRTQHRWDEFKNVSFRFTIDSFCGKRKIEAKRAIIQ---SFSYVGFDGPIRMKNPD 136

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
             F+   ++      +T T  N  +Y  +                 IA   +  +     
Sbjct: 137 EDFWVLEDFVSDVEVATRTPGNTHAYSEALEP------RKIYLGRWIANSSRNIVSKYDL 190

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           K                         RR+ S  S  AE        + L TA +      
Sbjct: 191 KK------------------------RRYISTTSMDAE--------LSLVTANMAH---- 214

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                    R  YDP  GTG F   A +  A        P      G+E   +       
Sbjct: 215 -----AAPGRLFYDPFVGTGSFCVAAAHFGALTCGSDIDPRSFK--GREKNDKEPMGLFT 267

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDA 311
                 +ES      S         +  L   +     + +PP+G +        +D   
Sbjct: 268 NFQQYGIESKFMDAFSS-----DLTNTPLLNRQFLDGIVCDPPYGVREGLRVLGTRDGSG 322

Query: 312 VEKEHKNGELGRFGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            E+   +G    + PG        G       +           GR  + + +S 
Sbjct: 323 REEVIIDGVPAHYRPGYIPPKKPYGFEAMQNDILAFASRTLVTDGRLCMWMPTSI 377


>gi|317481229|ref|ZP_07940300.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
 gi|316902562|gb|EFV24445.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
          Length = 1662

 Score = 44.4 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 71/245 (28%), Gaps = 49/245 (20%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP          +     A F+ +   ++T  +P+ G GGFL  A             
Sbjct: 99  FYTP----TFFVQTVATQIQAAFRNNGLQMKTFLEPSAGIGGFLPIA------------- 141

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P    +  E +  T  V  A         D  R +    +       D    K F    
Sbjct: 142 TPATYSYAFEKDNVTGLVLSA-------LQDGTRIIIDGFETIDEQDIDH---KTFDVVA 191

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGG 354
           SN PFG     D D   K+  +                     +H    ++     N GG
Sbjct: 192 SNIPFGNFKVFDYDFYNKDSVH---------------AQATKSIHCYFIMKGIDKLNEGG 236

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNR 413
             A +                 +R +L+ N  +   + LP  LF +T  I         +
Sbjct: 237 IIAFIAPRGV----ADAPANKFLRNYLVHNANMITALRLPDTLFMQTGGIEVGCDFFIFQ 292

Query: 414 KTEER 418
           K   +
Sbjct: 293 KHSHK 297


>gi|307244223|ref|ZP_07526338.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492373|gb|EFM64411.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 2909

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 112/384 (29%), Gaps = 68/384 (17%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
             R E  L+     +    L      I+     K   ++F  T E     L  +     L 
Sbjct: 1051 YRFESDLDRLFENLNYTKL---EKTIEEVEIKKTEAHNFKITEETLPEKLSPS---ERLN 1104

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
              I + S   +      +  ST   +    + +    +    +   +   +   S + E+
Sbjct: 1105 QNIEAISMLNRVESGQRELDSTAQEVLARYVGWGGLADV--FDESKEGQWEAARSFLKEN 1162

Query: 162  LI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L    + +        F TP+ V+        D               + +P+ G G F+
Sbjct: 1163 LSPSEYEAARESTLTAFYTPKTVI--------DSVYKTLAGMGFKSGNILEPSMGVGNFI 1214

Query: 221  TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                      G+       L  +G EL+  +  +                   ++  Q  
Sbjct: 1215 ----------GNLPDEMSKLKFYGVELDSVSGRIGKL-------------LYPESEVQIK 1251

Query: 281  TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               +  F+   F   + N PFG+    D++                     +  + L   
Sbjct: 1252 GFEETTFSNNFFDAVIGNVPFGEYKVNDRE--------------------YNKNNFLIHD 1291

Query: 341  HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-- 398
            +   K       GG  A + SS  +        +  +RR+L         + LP D+F  
Sbjct: 1292 YFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARTEFLGAIRLPNDIFKG 1346

Query: 399  -FRTNIATYLWILSNRKTEERRGK 421
               T + + +  L  R +   R +
Sbjct: 1347 VAGTEVTSDIIFLKKRDSIRERDE 1370


>gi|260665428|ref|ZP_05866275.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|260560696|gb|EEX26673.1| DNA methylase [Lactobacillus jensenii SJ-7A-US]
          Length = 368

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +   F + + ++           K    I+     V D       E+      +   +  
Sbjct: 15  QHIQFENYLRKIVFDPEKRNDFFKQLLKIDAQC-VVQDTFKQYFEEY------AAERKAN 67

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKES------PGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +   TP +V  L + ++    DA FK+            T  D T GTG  L       A
Sbjct: 68  QQDYTPDEVSKLLSIIVNTKYDADFKDDMKKRYFHKKGYTAADITAGTGSLLIQ--KWWA 125

Query: 229 DCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  S      +P        EL        +  + +R + +    
Sbjct: 126 DMTSELPWTYVPHRYFYFASELADNVIPYLLCNLALRGMNAIVVH 170


>gi|222108974|ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
 gi|221727896|gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
          Length = 1693

 Score = 44.4 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 50/231 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F       + D         +    G EL+P T   C+  +L   
Sbjct: 185 WRGGRVLEPGIGTGLFPALMPEALRD---------LSHVTGVELDPVTA--CIVRLL--- 230

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     +L     F   + NPPF  +       V  +     LG 
Sbjct: 231 -------QPRARILTGDFARTELPAS--FDLAIGNPPFSDR------TVRSDRAYRSLG- 274

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                       +    +   +       G  AA V SS  +    + +     R ++  
Sbjct: 275 ------------LRLHDYFIARSIDLLKPGAFAAFVTSSGTMDKADSSA-----REYIAR 317

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              + A + LP   F     T++   +     RK  E  G +  ++  ++ 
Sbjct: 318 TADLIAAIRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGNLSWLDTDEIR 368


>gi|327295586|ref|XP_003232488.1| RNA methylase [Trichophyton rubrum CBS 118892]
 gi|326465660|gb|EGD91113.1| RNA methylase [Trichophyton rubrum CBS 118892]
          Length = 454

 Score = 44.4 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 16/167 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E    T    +A      L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAVTCGSD--IDGRSFRGKEATSNTETGVIANFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---- 320
            S      +         +  L + + F   + +PP+G +        + + + GE    
Sbjct: 271 LSRFLDTFTS-----DLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMF 325

Query: 321 -----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  R     PK        L  + +         GR ++ + +
Sbjct: 326 QGVPSYKRENYIFPKRPYAFDAMLDDILDFAAQTLVVNGRISLWMPT 372


>gi|312795214|ref|YP_004028136.1| Modification methylase XamI [Burkholderia rhizoxinica HKI 454]
 gi|312166989|emb|CBW73992.1| Modification methylase XamI (EC 2.1.1.72) [Burkholderia rhizoxinica
           HKI 454]
          Length = 539

 Score = 44.4 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 33/213 (15%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             +  + N +  +     +     A    TP  +V    A         +  +      +
Sbjct: 64  AGNDPLGNAFAAIRS---AIERRAAGAVYTPLPIVRSMMA---------WLSAQSTPSRI 111

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DP  G+G F+  A     D                E++P    +  A +  R       
Sbjct: 112 VDPGAGSGRFILAAGETFPDA----------QLVAVEMDPLAALMLRANLSARGWTDRAT 161

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             ++            L         + NPP+ +  +     + ++ K      F     
Sbjct: 162 LLVN------DYREIKLPPCTGMTAFIGNPPYVRHHD-----IAEDWKAWYASNFAKFGI 210

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K S  + L L        L   G   A I  + 
Sbjct: 211 KASALAGLHLHFFLQTRLLAKPGDMGAFITSAE 243


>gi|257094512|ref|YP_003168153.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047036|gb|ACV36224.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 987

 Score = 44.4 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 99/315 (31%), Gaps = 65/315 (20%)

Query: 148 DTVPDRVMSNIYEHLIRRF------GSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFK 200
           D +P  ++S+IYE                +       T      L A +L+LD       
Sbjct: 275 DIIPVELISSIYEQFAHAVPPTVARRPTEARKNGVHYT-----RLSAVSLVLDEVMDGLT 329

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVPHGQELEPETH 252
                + ++ D TCG+G FL +A+  +    +  + P             +G ++     
Sbjct: 330 G----MESVLDLTCGSGIFLVEALRRLVHRRADGQAPTRDLIRKILHEQVYGVDISEAAI 385

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQ----------GSTLSKDLFTG-----------KR 291
            V    + +  LE DP      +++           G   + +               K+
Sbjct: 386 RVAAFSLYLAALELDPDPQPPHSLKFRPLIGKTLLIGDARTVEQDGDGREALTTPSGLKQ 445

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+  +  K   A               G+P    G  L  +  A +      
Sbjct: 446 FDLIVGNPPWSFRGLKGTQA--------RRKTRDVGIPAQPRGEGLDFVLRAAEFSHEKT 497

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD----LFFRTNIATYL 407
             G     +     F  R+G+G +  +  +     +  +V L ++    LF    +   +
Sbjct: 498 RFGVILSAMP----FFSRSGTGMAAAQHVMRLLAPV-TLVNL-SNLCNWLFATATMPAVV 551

Query: 408 WILSNRKTEERRGKV 422
                R   +R  +V
Sbjct: 552 LF--ARHRPQRSDQV 564


>gi|298736366|ref|YP_003728892.1| hypothetical protein HPB8_871 [Helicobacter pylori B8]
 gi|298355556|emb|CBI66428.1| hypothetical protein HPB8_871 [Helicobacter pylori B8]
          Length = 968

 Score = 44.4 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 58/481 (12%), Positives = 128/481 (26%), Gaps = 66/481 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 213 ELIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 272

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGML--------- 260
           P  GTG F+   ++      S   +           ++   ++ + +  +          
Sbjct: 273 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 332

Query: 261 IRRLESDPRRDLSKNIQQ--------------GSTLSKDLFTGKRFHYCLSNPPF--GKK 304
           ++  ++    D    +++               +   KD    +     + NPP+  G K
Sbjct: 333 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKDIKDTLANQNIRVIIGNPPYSAGAK 392

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKIS----DGSMLFLMHLANKLELPPNGGGRAAIVL 360
            E D +      K   L     G    S      +   L+             G    V+
Sbjct: 393 SENDNNQNLSHPKLERLVYEKYGKNSTSRSVGQTTRDTLIQSIRMASDVVKDKGVLGFVV 452

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LFFRTNIATY 406
           +   + +  A       R+ + +      ++ L  +              +F   + AT 
Sbjct: 453 NGGFIDSKSADG----FRKCVAKEFSHLYVLNLRGNQRTSGEVSKKEGGKIFDSGSRATI 508

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR--RQIL----DIYVSRE 460
             +   +        +   +  D         +    +N D     +I       ++++ 
Sbjct: 509 AIVFFVKDKSVSDNTIDYYDIGDYLKREEKLHRLANFLNLDAIPFEKITPNDKGDWINQR 568

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW---RKLSPLHQSFWLD 517
           N  F +++  +     +I          I D      +     W      + L QS    
Sbjct: 569 NDDFEKLIPLKRDKKLKI-------FDTIFDLNSNGVVSGRDPWVYNSSPNALMQSVQKC 621

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I                  K+  K  ++  L    +   I          D   + +   
Sbjct: 622 IDTYNADLKRFNARFREAFKQRTKGVKSGDLYKHLNDKEITTDKTKIAWTDGLKNHLIKN 681

Query: 578 N 578
            
Sbjct: 682 K 682


>gi|242240458|ref|YP_002988639.1| hypothetical protein Dd703_3043 [Dickeya dadantii Ech703]
 gi|242132515|gb|ACS86817.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 871

 Score = 44.4 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 46/201 (22%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           ++   +   +  ++++ +I     + S   + + + R+++ +   L LDP      +   
Sbjct: 234 MNWSEINPDIFGSMFQAVID--VEQRSRLGQHYTSYRNIMKVIQPLFLDPLRVELDKQRN 291

Query: 205 MIR------------TLYDPTCGTGGFLTDAMNHVADCGSH--------------HKIPP 238
             +             ++DP CG+G FL  A   + +                       
Sbjct: 292 NAKGLKALLVRLGKIKVFDPACGSGNFLIVAYKALRNLEIEVIEALRELEPQTFSMSGLH 351

Query: 239 ILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSK-----------NIQQGSTLSKD 285
           +   +G E++     +    + +   ++ S   +               NI  G++L  D
Sbjct: 352 LSQFYGIEIDDFASQIARLSLWLAEHQVNSQWEKAFGFAPLALPLRESGNIHSGNSLRLD 411

Query: 286 LFT--GKRFH---YCLSNPPF 301
            +    K+     Y + NPPF
Sbjct: 412 WYQVCPKKVDDEVYVIGNPPF 432


>gi|218263970|ref|ZP_03477901.1| hypothetical protein PRABACTJOHN_03591 [Parabacteroides johnsonii DSM
            18315]
 gi|218222381|gb|EEC95031.1| hypothetical protein PRABACTJOHN_03591 [Parabacteroides johnsonii DSM
            18315]
          Length = 1661

 Score = 44.4 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 62/444 (13%), Positives = 119/444 (26%), Gaps = 54/444 (12%)

Query: 40   LLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
             + R+   ++        +   +        ++D    +++          +        
Sbjct: 757  FIERISKLIQSGVHKKAFNEYLKGLQRDLNPSVDAAQAIEMLAQHIITRPVFDALFADYQ 816

Query: 95   NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
               NN  S           + ++  F      LEK     +   N  GI+         +
Sbjct: 817  FVNNNAVS---RSMQRMIDLLQEQAFEKDTEVLEKFYQSVRT--NVGGID--NLEGKQTI 869

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213
            + N+YE   +       E      TP + V      + D   A F  S       + DP 
Sbjct: 870  IKNLYEKFFKGAFPLTVEKLGIVYTPVECVDFIIRSVDDILKAEFNTSLTEQNVHILDPF 929

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRD 271
             GTG F+T  +          +   +   H  E+    + +    +  +   +       
Sbjct: 930  VGTGTFITRLLQSGLIRPEDMERKYLNEIHCNEIVLLAYYIADVNIESVFHDITRRKTYL 989

Query: 272  LSKNIQQGSTL------SKDLFTGKRFH--------------YCLSNPPFGKKWEKDKDA 311
                I    T         +LFT                     + NPP+    +   D 
Sbjct: 990  PYSGICLTDTFQLAEKKHNELFTEFFQDNSKRVKKQMATHVRVIVGNPPYSIGQKSANDN 1049

Query: 312  VEKEHKNGELGRFGPGLPKISDGSML-------FLMHLANKLELPPNGGGRAAIVLSSSP 364
             +         R      K S  ++L                 L PN GG  A + +S  
Sbjct: 1050 AQNLSYPALERRIEDTYVKKSSAALLKGVYDSYIKAFRWASDRLNPNEGGIIAFITNSGW 1109

Query: 365  LFNGRAGSGESEIRRWL--LENDLIEAIVAL---------PTDLF-FRTNIATYLWILSN 412
            L           I +    +    +   V             ++F   T +A  + + + 
Sbjct: 1110 LDKPMGEGFRRTIEQEFSKIYVFDLRGAVRAKTKENARKEGENVFNIMTGVAITILVKNP 1169

Query: 413  RKTEERRGKVQLINATDLWTSIRN 436
               +E + ++   N  D  T  + 
Sbjct: 1170 AHQKEDKCEILYRNIGDYLTREQK 1193


>gi|296807937|ref|XP_002844307.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma otae CBS
           113480]
 gi|238843790|gb|EEQ33452.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma otae CBS
           113480]
          Length = 455

 Score = 44.4 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 16/167 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E EP+     +A      L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAITCGSD--IDGRSFRGKETEPKASTGVIANFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---- 320
           ES      +         +  +   + F   + +PP+G +        + E + GE    
Sbjct: 271 ESKYLDTFTS-----DLTNTPIRNTRIFDGIICDPPYGVREGLRVLGHKDESRRGELMMY 325

Query: 321 -----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  R     PK   G    L  + +         GR ++ + +
Sbjct: 326 QGVPSYKRENYIFPKRPYGFEAMLDDILDFAAHTLVINGRLSLWMPT 372


>gi|148992117|ref|ZP_01821891.1| hypothetical protein CGSSp9BS68_11540 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489938|ref|ZP_02714137.1| adenine-specific DNA methylase [Streptococcus pneumoniae SP195]
 gi|168492466|ref|ZP_02716609.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC0288-04]
 gi|169834422|ref|YP_001695396.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|147929166|gb|EDK80177.1| hypothetical protein CGSSp9BS68_11540 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996924|gb|ACA37536.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183571653|gb|EDT92181.1| adenine-specific DNA methylase [Streptococcus pneumoniae SP195]
 gi|183573377|gb|EDT93905.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC0288-04]
 gi|332071839|gb|EGI82329.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA17570]
          Length = 317

 Score = 44.4 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|52550309|gb|AAU84158.1| BpmI endonuclease-methyltransferase fusion protein type IIG
           [uncultured archaeon GZfos37D1]
          Length = 951

 Score = 44.4 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 153 RVMSNIYEHLIRRFG-------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++ N+YE  + +                EV +    + TP+ +V       +    A  
Sbjct: 328 EILGNVYEQFLGKVIRLTAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVKNTVGKLIAGK 387

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
                    + DP CG+G FL  A  ++        +      H
Sbjct: 388 TPEEIAEIKILDPACGSGSFLIGAYTYLLRYHLDWYVSNNPKKH 431


>gi|268611940|ref|ZP_06145667.1| hypothetical protein RflaF_20836 [Ruminococcus flavefaciens FD-1]
          Length = 3221

 Score = 44.4 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 146/494 (29%), Gaps = 85/494 (17%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            ++D              T+ +P  G G F         D  SH         +G E++  
Sbjct: 2287 VIDGIYEALGNFGFDGGTVLEPAMGIGNFF---GRMPEDMQSH------SQLYGVEIDSL 2337

Query: 251  THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            +  +  A      L  D    +    Q         F    F   + N PF         
Sbjct: 2338 SGRIAQA------LYPDADIAIQGFEQN-------RFQNGCFDVAVGNVPF--------- 2375

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                    GELG F   +   +     F +   +KL+     GG  A V S+  L     
Sbjct: 2376 --------GELG-FRDTVHDTTKLHDFFFVEALDKLK----NGGIMAFVTSAGTL----- 2417

Query: 371  GSGESEIRRWLLENDLIEAIVALP---TDLF---FRTNIATYLWILSNRKTEERRGKVQL 424
               +  +R+ L +       + LP      F     T + T +  L         GK   
Sbjct: 2418 DKHDESVRQMLADKADFIGAIRLPGGKNGAFKDNAGTEVTTDIIFLKK-----HEGKSL- 2471

Query: 425  INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRP 483
                     + +      I        I   +    +     +++  + +G   + V   
Sbjct: 2472 -------AEMSDIPDWVHIGETADGLPINKYFEQHPDMVLGTVVEGNKLYGSGTMVVAED 2524

Query: 484  LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV-KESIKS 542
                       + +L A+I+  +   ++      +   +  ++  Y +  S       K+
Sbjct: 2525 GFDLKSALHEAVGKLSAEISHERGRDVYAKTADGVQVQIPSKLRNYSFFLSDDQVFFKKN 2584

Query: 543  NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
            N A   +     +    F      +D   + +  +  +  PD+ + +        +  D+
Sbjct: 2585 NAACEFRFDKGTAQHKRFKAFIELRDLTRELIEAMELDK-PDSVIKDL-QAKLNTAYDDF 2642

Query: 603  FVREVSPH--------VPDAYIDKIFIDEKDKEIGRVGYEIN--FNRFFYQYQPSRKLQD 652
            + +    H          D   + +   EK  +  ++  E +  F +      P + ++ 
Sbjct: 2643 YKKFGLIHSQTNKRYFSEDVSYNLVAGLEKSYDKTKL-LEKSDIFTKR--TIVPPKAVER 2699

Query: 653  IDAELKGVEAQIAT 666
            +D  L+ +   IA 
Sbjct: 2700 VDTALEALTLSIAE 2713


>gi|197313499|ref|YP_002149544.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092541|emb|CAQ30280.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 318  NGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            N   GR+ P +  I + + L + +    K       GG  A+V S    F   A  G+  
Sbjct: 1175 NVPFGRWAP-VDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAKRGDQ- 1229

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418
             R  +     +   V LPT  F     T + T + +   R+ + +
Sbjct: 1230 -RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQ 1273


>gi|10956643|ref|NP_066779.1| putative methylase [Rhodococcus equi]
 gi|31983873|ref|NP_858481.1| hypothetical protein pREAT701_27 [Rhodococcus equi]
 gi|10657890|gb|AAG21729.1| putative methylase [Rhodococcus equi]
 gi|10801081|dbj|BAB16635.1| Putative methylase (or helicase) [Rhodococcus equi]
          Length = 3229

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 318  NGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            N   GR+ P +  I + + L + +    K       GG  A+V S    F   A  G+  
Sbjct: 1455 NVPFGRWAP-VDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAKRGDQ- 1509

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418
             R  +     +   V LPT  F     T + T + +   R+ + +
Sbjct: 1510 -RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQ 1553


>gi|116492979|ref|YP_804714.1| adenine-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103129|gb|ABJ68272.1| Adenine-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 334

 Score = 44.4 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 78/240 (32%), Gaps = 39/240 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP  GTG  L+  +N+      + K        G + +    ++        RLE +
Sbjct: 123 TIFDPAVGTGNLLSTILNYFQTKRINFKGI------GVDNDDTMLSIASMSFTFERLEVE 176

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                S           D    K     +S+ P G            E   G   R   G
Sbjct: 177 LFHQDSI----------DDLFVKNVDIAVSDLPVGYYPI-------DERTKGFETRSKEG 219

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                     F+ HL  +  +     G   + L  S LF  +      ++  +  E   +
Sbjct: 220 HS--------FVHHLLIEQSMKTIRPGGYGVFLVPSNLFQTQEA---KKLLSFFHEKVYL 268

Query: 388 EAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +AI+ LPT +F        + IL     + ++  +V L      +    N+ K    + D
Sbjct: 269 QAILNLPTKMFKDEQAQKSILILQKVGASAKQAEQVLL----GEFPEFNNQEKMLDFLQD 324


>gi|322511339|gb|ADX06648.1| putative Eco57I-like restriction endonuclease [Organic Lake
            phycodnavirus]
          Length = 1156

 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 8/144 (5%)

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES--PGMIRTLYDPTCGTGGFLTDAMN 225
                +   +  TP  +++     L          S         +DP  G G F      
Sbjct: 947  QSEKKQFGEVFTPMYLINEMLDNLDKHYIKEHGRSIFTEPSFKWFDPASGMGNFPVAVYL 1006

Query: 226  HVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +   H          H  E       +    + I     +       N+ +G+TL  
Sbjct: 1007 KLMEGLKHQIPNDEDRKKHIIENMLYMSELNKKNVFITHQIFNMNNQYKLNMYEGNTLEL 1066

Query: 285  DLFT-----GKRFHYCLSNPPFGK 303
            D+ +       RF   L NPP+ K
Sbjct: 1067 DIVSVWGIQNNRFDVILGNPPYNK 1090


>gi|256841200|ref|ZP_05546707.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737043|gb|EEU50370.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1235

 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 78/276 (28%), Gaps = 68/276 (24%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLEC-------------ALEPTRSAVRE-KYLAFGGS 65
           ++L+G  + + + + IL       L C               +  RS   + K + +   
Sbjct: 250 DNLFGKSEASVYYRAILQNLFFAMLNCPITKEGGTEFTERRFKDNRSQFDDNKLMRYRDE 309

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED-------- 117
             D + F+++A  +    +      L    T    + +       A+ I  D        
Sbjct: 310 FNDPDEFLRLANETVPFLNGGLFDCLDEKRTGMYYDGFSERKESMAQLIVPDYLFFGEEA 369

Query: 118 ---FDFSSTIARLEKAGLLYKICKNF---------SGIELHPD-TVPDRVMSNIYEHLIR 164
               D S       K  +  +   +            +    D ++   ++  ++E+L+ 
Sbjct: 370 GKNIDLSEFYGDANKKKVSARGIIDILKRYNFTVEENMPFDKDVSLDPELLGKVFENLLA 429

Query: 165 RFG----SEVSEGAEDFMTPRDVVHLAT-----------------------------ALL 191
            +         +    F TPR++V                                  +L
Sbjct: 430 SYNPETQQTARKQTGSFYTPREIVQYMVDESLVTHLKRTVGNELESEYRKLLDYADNEIL 489

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           L     L          + DP CG+G F    +  +
Sbjct: 490 LTEQQKLAIMQSLYNCKILDPACGSGAFPVGVLQQM 525


>gi|239835171|ref|ZP_04683497.1| DNA methylase [Ochrobactrum intermedium LMG 3301]
 gi|239821147|gb|EEQ92718.1| DNA methylase [Ochrobactrum intermedium LMG 3301]
          Length = 3526

 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 74/252 (29%), Gaps = 56/252 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  S       T  ++V            ++ +        + +P+ G+G FL  A
Sbjct: 613 EEYRAAESSTRNAHYTSPEIVKAI--------WSVAQRLGFRGGRVLEPSVGSGNFLGLA 664

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +                G EL+P T  +              +   + NI+      
Sbjct: 665 PGALKGRA---------QFTGAELDPITGGIAK------------QLYPAANIKAPLGFQ 703

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                   F   + NPPFG            + K  E  RF                +  
Sbjct: 704 DLQIPDNYFELAVGNPPFGS-------ERLYDPKRKEAARFS------------IHNYFF 744

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A+V+++S +      +     R ++ +   +   + LP + F     
Sbjct: 745 AKSVETLKPGGVLAMVITNSFMDAANTAA-----RAYIADRARLVGAIRLPNNAFLANAG 799

Query: 401 TNIATYLWILSN 412
           T + T + IL  
Sbjct: 800 TEVTTDIVILQK 811


>gi|301794979|emb|CBW37443.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
          Length = 317

 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +           +   +   G E++     +  +   +  L++           Q
Sbjct: 123 LGATFL---------ISLDKKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSDL----LKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|258513312|ref|YP_003189567.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635215|dbj|BAI01188.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256638270|dbj|BAI04236.1| DNA methylase [Acetobacter pasteurianus IFO 3283-03]
 gi|256641324|dbj|BAI07283.1| DNA methylase [Acetobacter pasteurianus IFO 3283-07]
 gi|256644379|dbj|BAI10331.1| DNA methylase [Acetobacter pasteurianus IFO 3283-22]
 gi|256647434|dbj|BAI13379.1| DNA methylase [Acetobacter pasteurianus IFO 3283-26]
 gi|256650487|dbj|BAI16425.1| DNA methylase [Acetobacter pasteurianus IFO 3283-32]
 gi|256653478|dbj|BAI19409.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656531|dbj|BAI22455.1| DNA methylase [Acetobacter pasteurianus IFO 3283-12]
          Length = 902

 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 31/149 (20%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------PILVPHGQELEPETHA 253
              ++DP CG+G FL  A   + D  S                 P+   +G E+      
Sbjct: 344 GIRVFDPACGSGNFLVIAYKDMRDIQSEIDDRLKIERAERKSVIPLANFYGIEIRDFAVE 403

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQ-------------QGSTLSKDLFT-----GKRFHYC 295
           +    +LI   +SD      K  +              G+ L +D F           Y 
Sbjct: 404 IARLSLLIAEFQSDEIHIDQKQARLNVLPLKDTGHIICGNALERDWFDVCAPQKSSEIYI 463

Query: 296 LSNPPF-GKKWEKDKDAVEKEHKNGELGR 323
             NPP+ G +W+  +   + E   G+  +
Sbjct: 464 CGNPPYKGSQWQSAEQKADLEQIFGQRTK 492


>gi|197313568|ref|YP_002149612.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092610|emb|CAQ30352.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 44.0 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 318  NGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            N   GR+ P +  I + + L + +    K       GG  A+V S    F   A  G+  
Sbjct: 1175 NVPFGRWAP-VDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAKRGDQ- 1229

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418
             R  +     +   V LPT  F     T + T + +   R+ + +
Sbjct: 1230 -RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQ 1273


>gi|297718581|gb|ADI50196.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2934

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 318  NGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            N   GR+ P +  I + + L + +    K       GG  A+V S    F   A  G+  
Sbjct: 1174 NVPFGRWAP-VDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAKRGDQ- 1228

Query: 377  IRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418
             R  +     +   V LPT  F     T + T + +   R+ + +
Sbjct: 1229 -RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQ 1272


>gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896]
          Length = 3918

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 70/233 (30%), Gaps = 61/233 (26%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D               + +P+ GTG FL          G+  +       +G EL+
Sbjct: 2162 KVVIDSIYKALSNMGFESGNILEPSMGTGRFL----------GNLPESMQSSKFYGVELD 2211

Query: 249  PETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
              +  +       A + I+  E                     F+   F   + N PFG+
Sbjct: 2212 SISGRIASKLYPNANIQIKGFEETT------------------FSNNLFDIAIGNVPFGE 2253

Query: 304  KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                D+          E  R           + L   +   K       GG  A + S+ 
Sbjct: 2254 YKISDR----------EYERN----------NFLIHDYFFAKTLDKVRSGGVVAFITSNG 2293

Query: 364  PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
             +          ++RR++ E       + LP + F     T + + +  L  R
Sbjct: 2294 TMDKKS-----EDVRRYISERAEFLGAIRLPNNTFKGEAGTEVTSDILFLKKR 2341


>gi|29350157|ref|NP_813660.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342069|gb|AAO79854.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1320

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 49/227 (21%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
              DP+ GTG    + +  V +             H  E +  T  +  +     R+  D
Sbjct: 14  RFLDPSAGTG-MFINGLKDVPE------------VHCFEKDKLTGKILSSLYPESRVTID 60

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             + +                   F    SN PFG     D+D            R    
Sbjct: 61  GFQSIQPYYNNY------------FDMVSSNIPFGNTRVYDRD----------FDRSEDV 98

Query: 328 LPKISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           + K S    L  +H    L+     + GG  A + +S  + + +       +R WL+ + 
Sbjct: 99  VRKSS----LAAVHNYFFLKGMDTLHEGGILAYITTSGVMDSPQNRP----VREWLVNHA 150

Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSN--RKTEERRGKVQLINAT 428
            + + + LP +LF    T +++ L +L    RK+E    +   I   
Sbjct: 151 NLVSAIRLPDNLFVDAGTEVSSDLIVLQKNTRKSELTEKERNFIETR 197


>gi|322391548|ref|ZP_08065017.1| adenine-specific methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145631|gb|EFX41023.1| adenine-specific methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 317

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 44/257 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ L+ +        A    TP  + HL   ++        +  P    ++ +   G 
Sbjct: 68  RAYQFLLMKAAQTEPLQANHQFTPDVIGHLMIFII-------EQLFPAENLSILELGSGM 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +  +            +   G EL+     +  +             DL    
Sbjct: 121 GILGASFLTSM---------NKKVNYLGIELDDLLIDLAAS--------MAEVMDLQMGF 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +         +S+ P G   +    +                +    + + 
Sbjct: 164 VQGDAVRPQVLKES--DIIVSDLPVGYYPDDQIAS-------------RYQVSSKDEHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+        A  +  +  L + ++      ++ WL E   + AI+ALP D
Sbjct: 209 AHHLLMEQSLKYLKTDA-YAIFLAPTDLLTSPQS----ELLKTWLTEQAQLVAIIALPED 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF +   +  +++L  +
Sbjct: 264 LFAQGAHSKTIFVLKKK 280


>gi|146319984|ref|YP_001199695.1| adenine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|253751046|ref|YP_003024187.1| hypothetical protein SSUSC84_0128 [Streptococcus suis SC84]
 gi|253752947|ref|YP_003026087.1| hypothetical protein SSU0133 [Streptococcus suis P1/7]
 gi|253754770|ref|YP_003027910.1| hypothetical protein SSUBM407_0130 [Streptococcus suis BM407]
 gi|145690790|gb|ABP91295.1| Adenine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|251815335|emb|CAZ50906.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251817234|emb|CAZ54962.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251819192|emb|CAR44368.1| conserved hypothetical protein [Streptococcus suis P1/7]
 gi|292557591|gb|ADE30592.1| Adenine-specific DNA methylase [Streptococcus suis GZ1]
 gi|319757300|gb|ADV69242.1| adenine-specific DNA methylase [Streptococcus suis JS14]
          Length = 317

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 87/260 (33%), Gaps = 44/260 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ L+ +             TP  +  + + L+        +  P    T+ +   GT
Sbjct: 68  RAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV-------DQLVPTQKVTVLEIGSGT 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +N              L   G E++     +  +      +    + D+S   
Sbjct: 121 GNLAQTILNA---------SQKELDYLGIEVDDLLIDLSAS------IADVMQADISF-- 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +    +    L + P G               +    R+    PK  + + 
Sbjct: 164 AQGDAVRPQILKESQ--VILGDLPIG-----------YYPDDQIASRYQVASPK--EHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+      G A ++  +  L + ++      ++ WL E   I A++ALP +
Sbjct: 209 AHHLLMEQSLKYL-EKDGFAILLAPNDLLTSPQSD----LLKGWLQEQANIVAMIALPPN 263

Query: 397 LFFRTNIATYLWILSNRKTE 416
           LF +T +A  +++L  +   
Sbjct: 264 LFGKTAMAKSIFVLQKKAAR 283


>gi|228911340|ref|ZP_04075143.1| hypothetical protein bthur0013_54770 [Bacillus thuringiensis IBL
           200]
 gi|228848277|gb|EEM93128.1| hypothetical protein bthur0013_54770 [Bacillus thuringiensis IBL
           200]
          Length = 289

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             G   F TP  +  + T ++    D    +     +T+YDP  G G     A N+
Sbjct: 173 KNGLGYFPTPFQLSIMMTHVVYKGIDNPATKDKYKGKTVYDPCVGCGSTFLPASNY 228


>gi|323969194|gb|EGB64496.1| hypothetical protein ERHG_04662 [Escherichia coli TA007]
          Length = 2255

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 170 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 213 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 268 DVVLMRKHPAEMAEKIPLVDESTL 291


>gi|323186569|gb|EFZ71913.1| helicase conserved C-terminal domain protein [Escherichia coli
           1357]
          Length = 2221

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 136 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 178

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 179 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 233

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 234 DVVLMRKHPAEMAEKIPLVDESTL 257


>gi|312199459|ref|YP_004019520.1| hypothetical protein FraEuI1c_5666 [Frankia sp. EuI1c]
 gi|311230795|gb|ADP83650.1| hypothetical protein FraEuI1c_5666 [Frankia sp. EuI1c]
          Length = 1197

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 137/442 (30%), Gaps = 78/442 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           +L    +R  E         + + +LA   +     +  +   +      + +   L  +
Sbjct: 69  VLGTVFVRFCEDN-----GLIGDPFLAGPTTARLTLAEERTEDFYRRQPEKTARDWLRKS 123

Query: 95  NTRNNLESYIASFSDNAKAIFEDF----DFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                     A   D             D +  +    +         +    +   D  
Sbjct: 124 FDEIAKVPVGAGLFDQRHNALFQIPPTHDAAKNLLAFWRRRTEAGTLVH----DFTDDAW 179

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             R + ++Y+ L      +V +      TP  V      L L P      E    +  L 
Sbjct: 180 DTRFLGDLYQDL----SEDVRKKYALLQTPEFVEEFILDLTLTP---AIDEFGYDVVKLI 232

Query: 211 DPTCGTGGFLTDAMNH-VADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGML- 260
           DPTCG+G FL  A    +A+   +     +           HG ++ P   A+    +  
Sbjct: 233 DPTCGSGHFLLGAFRRLLAEWEKNSPDRDVFERVQLALDAVHGVDINPYAAAIAKFRLTI 292

Query: 261 -------IRRLESDPRRDLSKNIQQGSTLSK----DLFTGK------------------- 290
                  +  L++        ++  G +L K    DLF  +                   
Sbjct: 293 EALRVAGLTTLDAAAGYTFPLHVAVGDSLLKNRQLDLFGEERDELAEFAYATEDLADHLG 352

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                R+H  + NPP+    +K  +A+ ++  +   GR+      +S         LA +
Sbjct: 353 ILEEGRYHAVVGNPPYFTVRDKKLNALYRDLYSSCAGRY-----TLSVPFAQRFFELARQ 407

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIA 404
            +    G GR   + ++S +               ++E   LI+      +   +     
Sbjct: 408 SDGDGVGAGRVGQITANSFMRREFGKKLIENFFARVVELTHLIDT-----SGA-YIPGPG 461

Query: 405 TYLWILSNRKTEERRGK-VQLI 425
               IL+ R+ + +R K V++I
Sbjct: 462 VTTVILAGRRNQRKRIKTVRMI 483


>gi|33323519|gb|AAQ07489.1|AF503408_13 DarB [Enterobacteria phage P7]
          Length = 2255

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 170 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 213 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 268 DVVLMRKHPAEMAEKIPLVDESTL 291


>gi|260871137|ref|YP_003237917.1| defense against restriction protein [Escherichia coli O111:H- str.
           11128]
 gi|257767716|dbj|BAI39209.1| defense against restriction protein [Escherichia coli O111:H- str.
           11128]
          Length = 2255

 Score = 44.0 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 170 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 213 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 268 DVVLMRKHPAEMAEKIPLVDESTL 291


>gi|260887938|ref|ZP_05899201.1| putative restriction enzyme [Selenomonas sputigena ATCC 35185]
 gi|260862338|gb|EEX76838.1| putative restriction enzyme [Selenomonas sputigena ATCC 35185]
          Length = 846

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +++   ++NPP+           E   K              ++ S L ++ L   L+  
Sbjct: 489 QKYDVIVTNPPYLGSTRFSFKLNEYVKKYFP-----------NEKSDLSMVMLKKSLQET 537

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL- 407
               G  A V ++S +    + S   ++R ++ ++  I+ +V   T+LF       + + 
Sbjct: 538 AKTNGYVAFVTTASWM----SLSSFEKLRSYMYKDCAIDTLVDCGTELFEGKVGHNSIVS 593

Query: 408 WILSNRKTEERRGKVQLIN--ATDLWTSIRNEGKKRRII--NDDQRRQI 452
           W++   K   R   V+L++   +           K+       +   +I
Sbjct: 594 WVVRKTKFNYRMTAVRLVDYCYSRRDEKEVEFFNKKNYFVATQENFSKI 642


>gi|145139|gb|AAA23389.1| restriction endonuclease [Escherichia coli]
          Length = 997

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 86/320 (26%), Gaps = 73/320 (22%)

Query: 156 SNIYEHLIR---RFGSEVSEGAED---------FMTPRDVVHLATALLLDPDDALFKESP 203
            NIYE  +    R     +   +            TP  +V       +        +  
Sbjct: 323 GNIYEIFLSEKVRIDELGNVKIQPKEEHIDRDVVTTPTHIVKEIIRNTVVEYCKGKSDIE 382

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------------------- 241
            +     D  CG+G F+  A   + D    + I                           
Sbjct: 383 ILNSKFADIACGSGAFIIVAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILC 442

Query: 242 --PHGQELEPETHAVCVAG-----------------------MLIRRLESDPRRDLSKNI 276
              +G + +      C  G                       +    L  +   D    +
Sbjct: 443 KCIYGIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKV 502

Query: 277 QQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           +Q    S + F  T  +F   + NPP+      ++       +     R      K  D 
Sbjct: 503 KQEDIFSINPFDLTNYQFDVIVGNPPYMATEHMNQLT---PKELDIYKRKYKSAYKQFDK 559

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             LF+      L+      G    +L S  +          ++R++L EN  +  +++  
Sbjct: 560 YFLFIERSIQILKEY----GYLGYILPSRFIKVDAG----KKLRKFLSENKYLSKLISFG 611

Query: 395 T-DLFFRTNIATYLWILSNR 413
           +  +F      T L  L+  
Sbjct: 612 SHQVFKNKTTYTCLLFLNKE 631


>gi|325495636|gb|EGC93500.1| DarB [Escherichia fergusonii ECD227]
          Length = 2221

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 136 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 178

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 179 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 233

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 234 DVVLMRKHPAEMAEKIPLVDESTL 257


>gi|270620566|ref|ZP_06221875.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
 gi|270317737|gb|EFA29129.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
          Length = 294

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
               K +   +  G A IVL SS L N   G+   + R  LL++  + AI    +  F +
Sbjct: 18  FFIEKAKQLLHAKGIAVIVLPSSILTN---GNIYIKCREILLQHFDLVAIAEFGSGTFSK 74

Query: 401 TNIATYLWILSNRKTEER 418
           T   T    L  ++    
Sbjct: 75  TGTNTATLFLRRKQATPN 92


>gi|255015071|ref|ZP_05287197.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 1000

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 112/396 (28%), Gaps = 79/396 (19%)

Query: 164 RRFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             +     E     F TP ++      +L           P     + D  CG G F   
Sbjct: 59  HEYAEAKKEFEMGQFFTPHEICRDMVDMLC----------PVSSEMVLDMCCGMGNFF-- 106

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             NH+ +  +          +G +++ +  +V                 L          
Sbjct: 107 --NHLPNPHN---------AYGFDIDGKAVSVAR--------------YLYPEAHIEKCD 141

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +  +  +RF   + NPPF  K++                              L   + 
Sbjct: 142 IRQYYPEQRFDVIIGNPPFNLKFDY----------------------------KLSQEYY 173

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +K     N  G   +++  S +   ++G  E      +           L    F    
Sbjct: 174 MDKAYDVLNPAGILMVIVPCSFM---QSGFWEKTRIAGINGRFSFVGQTKLGPSAFAAVG 230

Query: 403 I---ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +    T + +   +      G +++  A +    I  +  K+RI      +  L   + R
Sbjct: 231 VHDFNTKIMVFLRK-----SGHIKM-QAYNAEEFITADELKKRIGEARAMKHRLRFDLMR 284

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           E  + ++  +   F Y+  K +  L+    L+K           +R   P   +    + 
Sbjct: 285 ETNRINK-EELELFEYKLAKYMYELKAHAKLNKHIDKAEALVTKFRNQKPPENATREQVE 343

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
           +    ++ P        +     N     +V   K+
Sbjct: 344 QWEKNKLTPKKVLAVIRRYITSQNTVPRKEVALVKT 379


>gi|329954690|ref|ZP_08295750.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT
           12056]
 gi|328527231|gb|EGF54235.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT
           12056]
          Length = 500

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 30/187 (16%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              + DP CGTG F+  A N   +             +G +++    A+C        ++
Sbjct: 82  GAYILDPCCGTGNFIVSARNSGHEN-----------VYGSDIDANAIALCQRK---SGIK 127

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +    D   N   G  + ++L       Y + NPP+          + K+       R  
Sbjct: 128 NITVLDTLAN--NGKDILRELHLKSPVDYVIGNPPYV--------PINKDITIDTPDRLF 177

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               K S GS LF+  +    EL     G  + ++  + L      +  S++R+ +L   
Sbjct: 178 LKSVKES-GSNLFIAAIYRAFELA-CPDGVISYIIPKNFLHV----ASYSKLRKLILSEK 231

Query: 386 LIEAIVA 392
            I +I+ 
Sbjct: 232 TILSIID 238


>gi|16119916|ref|NP_396621.1| SNF2 family helicase [Agrobacterium tumefaciens str. C58]
 gi|15163586|gb|AAK91062.1| helicase, SNF2 family [Agrobacterium tumefaciens str. C58]
          Length = 1693

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 103/357 (28%), Gaps = 66/357 (18%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE---K 129
            +  G +F+   +  L+       R N+ +   +    A   F   +   T+ R      
Sbjct: 60  CRARGLNFHLADDRGLARRWKDRARANIAAIRLAAEIEAGQRFATREEQETLIRFTGFGA 119

Query: 130 AGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + L   + +    +E     D +   +   + E     + S          TP  +V   
Sbjct: 120 SDLANGVFRRPGELEFRKGWDEIGSDLEDAVCET---DYASLARCTQYAHFTPEFIVRAI 176

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
                    +  +        +  P  GTG F       + D         +    G EL
Sbjct: 177 --------WSALQRLGWRGGRVLAPGIGTGLFPALMPEALRD---------LSHVTGVEL 219

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +P T  +                     I  G     +L     F   + NPPF  +  +
Sbjct: 220 DPVTARIVRL------------LQPRARILTGDFARTELPAS--FDLAIGNPPFSDRTVR 265

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                ++ +++  L      + +             + L+     G  AA V SS  +  
Sbjct: 266 S----DRAYRSLGLRLHDYFVARS-----------IDLLKP----GAFAAFVTSSGTMDK 306

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             + +     R  + +   + A + LP   F     T++   +     RK  E  G 
Sbjct: 307 ADSSA-----REHIAKTADLIAAIRLPEGSFRADAGTDVVVDILFFRKRKVAELEGD 358


>gi|315222612|ref|ZP_07864501.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
 gi|315188298|gb|EFU22024.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
          Length = 2325

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 59/262 (22%)

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +  + +        F TP+ V+        D               + +P+ G G F+  
Sbjct: 1033 LSEYEAARESTLTSFYTPKAVI--------DGIYKTLSGMGFKQGNILEPSMGIGNFI-- 1082

Query: 223  AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                    G+          +G EL+  +  +                   ++  Q    
Sbjct: 1083 --------GNLPDEMNKSKFYGVELDSVSGRIAKL-------------LYPESDVQVKGF 1121

Query: 283  SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             +  F+   F   + N PFG+                    F     + +  + L   + 
Sbjct: 1122 EETSFSNNFFDVAIGNVPFGE--------------------FKVNDREYNRNNFLIHDYF 1161

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399
              K       GG  A + SS  +        +  IR+++         + LP D F    
Sbjct: 1162 FAKSIDKVRNGGVIAFITSSGTM-----DKKDESIRKYINARAEFLGAIRLPNDTFKGIA 1216

Query: 400  RTNIATYLWILSNRKTEERRGK 421
             T + + +  L  R +   R  
Sbjct: 1217 GTEVTSDIIFLKKRDSVLERDD 1238


>gi|229032290|ref|ZP_04188263.1| hypothetical protein bcere0028_43320 [Bacillus cereus AH1271]
 gi|229175349|ref|ZP_04302864.1| hypothetical protein bcere0006_44290 [Bacillus cereus MM3]
 gi|228608181|gb|EEK65488.1| hypothetical protein bcere0006_44290 [Bacillus cereus MM3]
 gi|228729070|gb|EEL80073.1| hypothetical protein bcere0028_43320 [Bacillus cereus AH1271]
          Length = 328

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLA-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|15901866|ref|NP_346470.1| hypothetical protein SP_2045 [Streptococcus pneumoniae TIGR4]
 gi|15903897|ref|NP_359447.1| hypothetical protein spr1855 [Streptococcus pneumoniae R6]
 gi|111658728|ref|ZP_01409365.1| hypothetical protein SpneT_02000141 [Streptococcus pneumoniae
           TIGR4]
 gi|116516707|ref|YP_817261.1| hypothetical protein SPD_1854 [Streptococcus pneumoniae D39]
 gi|14973556|gb|AAK76110.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
 gi|15459545|gb|AAL00658.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077283|gb|ABJ55003.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|332199119|gb|EGJ13199.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA41317]
          Length = 317

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +     +          G E++     +  +   +  L++           Q
Sbjct: 123 LGAIFLTSLTKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSDL----LKEWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|241888649|ref|ZP_04775956.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
 gi|241864672|gb|EER69047.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
          Length = 300

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 106/321 (33%), Gaps = 57/321 (17%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I    +  K     FD       LE     + I  NFS  +          +   Y+ L+
Sbjct: 11  IDKQVEENKGEGLYFDSLVNYLTLENDEDYFDIIDNFSKED----------IKKAYQFLL 60

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   +        +TP +V+ +  + +L+      K       ++ D   G+G FL   
Sbjct: 61  LK-ALKELNNPSYDITP-EVITMYVSHILEYLYNNEKI------SVADFASGSGNFLI-- 110

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                +  +  K    L     +         +  +L   +E   +  L           
Sbjct: 111 -----NLSALSKGEYELTSVDVDNNYARLQQNIFNLLETNVEIINQDALKPLNI------ 159

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 K+    +S+ PFG   ++D     K                 S  ++LF+   A
Sbjct: 160 ------KKQDVIISDVPFGYYADEDNSLNYKLCSAEGY----------SLNALLFIEQAA 203

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L    N  G   +V+    L        E   +++L E+  + A++ LP ++F   + 
Sbjct: 204 NYL----NDNGVGVLVVPKKVL------ELEDNFKKFLEEDINLNAVITLPDEMFKNASQ 253

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +++ ++  +   +V L
Sbjct: 254 QKAIILITKKEQTKLPNQVFL 274


>gi|257126730|ref|YP_003164844.1| methyltransferase small [Leptotrichia buccalis C-1013-b]
 gi|257050669|gb|ACV39853.1| methyltransferase small [Leptotrichia buccalis C-1013-b]
          Length = 691

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 119/353 (33%), Gaps = 35/353 (9%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L   ++  +  V E Y     +N   ++ +     +     +  +        RN     
Sbjct: 87  LSKMIKELKLEVDEMYRLLKLNNDFEKNDILKKDSNLLTYGDLIVHMNKIYQKRNKYVHG 146

Query: 104 IASFSDNA-KAIFEDFDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNI-Y 159
               ++N  K  FE +     +  L+K   +  + KN   S I  +     +   +   Y
Sbjct: 147 AFEINENIDKEKFEKY----VLDTLDKESAILLVLKNAFISKIPYYLIEKEELTKNYKKY 202

Query: 160 EHLIRRFGSEVS----EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           E L   F   +     +    F TP  +       L   +    KE+      + DP+CG
Sbjct: 203 EELYNNFFENIDNEIIKEKSQFFTPIAISQKLVDDLKHLNKKFEKENI----KILDPSCG 258

Query: 216 TGGFLTDAMNHVADCGSH-HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
            G    + +  + +  S  +K    +     +++ +    C   M     +++    +  
Sbjct: 259 FGILTINLLEKIVEISSDSNKRINKIEVDMIDIDEKCIENCKIIMKEFLEKNNLNDLVEV 318

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           N   G+ L+ ++   +++ + + NPPF K  +++K   + E            + K  +G
Sbjct: 319 NYIIGNYLNYEIK--RKYDFIVQNPPFKKIKKEEKVKYDGE------------ITKYING 364

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                     K     +  G    +   + L    +G     +R++L  N  +
Sbjct: 365 QANLYHLFIIKSLKLLDEKGILFTISPKNFL----SGKYTENLRKFLFNNYSL 413


>gi|149181114|ref|ZP_01859614.1| hypothetical protein BSG1_10283 [Bacillus sp. SG-1]
 gi|148851201|gb|EDL65351.1| hypothetical protein BSG1_10283 [Bacillus sp. SG-1]
          Length = 328

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 112/327 (34%), Gaps = 50/327 (15%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            +Y+ + +++ + +F        +  L K  L  K  +  +G+E        + +     
Sbjct: 26  YTYLEAVAESGENLFHQDVLQDELNELSKKRLEKKYAE--AGLEQMGKEQIRKALQLA-- 81

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            +++  G + S      MTP  +    + L+        +        + DP  GTG  L
Sbjct: 82  -MLK--GMKESSQPNHQMTPDAIGMFISYLVGKFTSGSQEI------RVLDPAVGTGNLL 132

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T  +N + D  +           G +++     +         + ++ ++   +   Q S
Sbjct: 133 TTVLNGLGDKKT--------ASIGADIDDLLIKLSY-------IGANLQKHPLQLFNQDS 177

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              + LF        +S+ P G  +  D  A E E K+ E   +                
Sbjct: 178 L--EPLFID-PVDVVISDLPVG-YYPNDLRAAEYELKSDEGHSY-------------SHH 220

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
               +     N GG    ++ +    +  A     ++  +  +   I+ ++ LP  LF  
Sbjct: 221 LFIEQSIKHTNPGGYLFFLVPNHLFESDEA----KKLHAFFKDQVYIQGLLQLPMSLFKN 276

Query: 401 TNIATYLWILSNRKTEERRGK-VQLIN 426
              A  + IL  +K + +  K V + N
Sbjct: 277 EQSAKSILILQKKKADIKPPKEVLMAN 303


>gi|37522309|ref|NP_925686.1| hypothetical protein gll2740 [Gloeobacter violaceus PCC 7421]
 gi|35213309|dbj|BAC90681.1| gll2740 [Gloeobacter violaceus PCC 7421]
          Length = 1442

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI------RTLYDPTCGTGGFLTDA 223
             + +  + TP   V       L P  A                 + DP  G+G FL +A
Sbjct: 501 GRKASGSYYTPHSFVRFLVQETLGPQVAERSPQSDPKPLEILKLKVCDPAMGSGHFLVEA 560

Query: 224 MNHVADC 230
              + + 
Sbjct: 561 CRFLGEK 567


>gi|332362019|gb|EGJ39821.1| SNF2 family protein [Streptococcus sanguinis SK49]
          Length = 2077

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 70/250 (28%), Gaps = 51/250 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 493 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIREKSE---------LYGVELDS 543

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 544 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 590

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 591 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 629

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
                  + + +  N      V LP   F     T + T L      + +    +  + +
Sbjct: 630 DN-----VLQEIKSNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKNLNEEELVFS 684

Query: 427 ATDLWTSIRN 436
            + L+   + 
Sbjct: 685 GSILFEEDKR 694


>gi|225857618|ref|YP_002739129.1| adenine-specific DNA methylase [Streptococcus pneumoniae P1031]
 gi|225725523|gb|ACO21375.1| adenine-specific DNA methylase [Streptococcus pneumoniae P1031]
          Length = 317

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +     +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLTKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSN----LLKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|90581558|ref|ZP_01237350.1| hypothetical protein VAS14_00096 [Vibrio angustum S14]
 gi|90437223|gb|EAS62422.1| hypothetical protein VAS14_00096 [Vibrio angustum S14]
          Length = 1587

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 88/301 (29%), Gaps = 67/301 (22%)

Query: 127 LEKAGLLYKICKNFSGIE--------LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           L+K        +               + D     ++ + +    + F +  +     F 
Sbjct: 38  LKKDETTQDEIEIIDNFNGFGEISEAFNQDHKDYDLLRSCFVSD-KAFQTARASTPTSFY 96

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ ++      L+                + +P+CGTG F+                  
Sbjct: 97  TPKFIIDSMYRCLV--------RLGFNEGNIIEPSCGTGRFI-----------KSLPDTI 137

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                  EL+  +  +         L    +  +++  +        +   K F   ++N
Sbjct: 138 NAKVTAVELDETSGRLARL------LNPKAKILINQRFEN-------VKLDKNFSLAITN 184

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            PF       K+ ++                  S+   L    +A  L    NGG  A +
Sbjct: 185 VPFSSNKAMTKELLD-----------------TSN---LHSYFIAKALHSVHNGGFVAVV 224

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEE 417
           V  S+ L +  +      I +       + A   LP ++F  T+ +  + I     K   
Sbjct: 225 V--STWLLDSISNKNRKAIFKA---GGELVAGARLPNNVFKGTSTSADVLIFQKVEKPMN 279

Query: 418 R 418
           R
Sbjct: 280 R 280


>gi|225022003|ref|ZP_03711195.1| hypothetical protein CORMATOL_02035 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945289|gb|EEG26498.1| hypothetical protein CORMATOL_02035 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 455

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 37/229 (16%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +  T++DP CG GG L                   +   G ++ P    V      +
Sbjct: 83  GTTVTDTVFDPACGIGGTLLALAR-----------AHDVAIVGADIAPAVVDVAKLQAQL 131

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             + +D +   S      S+        +R+H  +   P  ++        +  H     
Sbjct: 132 SGVSADFQCRDSLAHAVSSSR-------QRYHTVVVEAPLDQQ-------ADAGHCQNLA 177

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F   +   +     FL+     L    +G G      S                    
Sbjct: 178 RSFDENIMVPARAHEAFLLCALRHL--ASDGYGYVLTSFSPGVSHQSAELRRLLL----- 230

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
                +EAI+ LP      +++ T LW+L    T        +I+A+++
Sbjct: 231 -RRRQVEAIIQLPEKFLAYSHVNTLLWVLRGSPTAA----TAVIDASNI 274


>gi|288926883|ref|ZP_06420784.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
 gi|288336364|gb|EFC74744.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
          Length = 1109

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 69/212 (32%), Gaps = 38/212 (17%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            IR   DP+ G G F            +             E +  T  +  A   I   
Sbjct: 125 PIRRCLDPSAGMGAF------------TEIFATKAGTVDAMEKDLLTARISQA---IH-- 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +      Q       +L    ++    SN PFG     D    ++E+  G+    
Sbjct: 168 --PYGQGNIIVRQAPFEAIGELEDKDKYDLITSNIPFG-----DFMVYDREYSKGKD--- 217

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                   + +     +   K       GG  A + S   L    +   E+ IRR+L++N
Sbjct: 218 ----ILKRESTRAIHNYFFVKGLDCIKEGGLLAFITSQGVL---DSPKNEA-IRRYLMQN 269

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNR 413
             + + + LP+ +F     T + + L +L  +
Sbjct: 270 SRLISALRLPSGMFSENAGTEVGSDLIVLQKQ 301


>gi|240147421|ref|ZP_04746022.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257200385|gb|EEU98669.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 1560

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 51/208 (24%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            + +P  G G F           G   +       +G EL+  T  +       R+L  + 
Sbjct: 1239 ILEPAMGIGNFF----------GMLPEKMQESRLYGVELDGITGRIA------RQLYPNA 1282

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               ++   +         +    F   + N PFG+                    +    
Sbjct: 1283 DVKITGFEKTD-------YPNDFFDVAIGNVPFGQ--------------------YKVAD 1315

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                  + L   +   K       GG  A V S   +          E+R++L +   + 
Sbjct: 1316 RAYDKHNFLIHDYFFAKALDKVRPGGVVAFVTSKGTMDKKSP-----EVRKYLAQRAELL 1370

Query: 389  AIVALPTDLF---FRTNIATYLWILSNR 413
              + LP   F     T + + +  L  R
Sbjct: 1371 GAIRLPNTAFKENAGTEVTSDILFLKKR 1398


>gi|294501530|ref|YP_003565230.1| hypothetical protein BMQ_4794 [Bacillus megaterium QM B1551]
 gi|294351467|gb|ADE71796.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 330

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 46/295 (15%)

Query: 120 FSSTIARLEKAGLLYKICKN-FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           F  TI + E   +  K  K  +  I L  D      +   Y+  I + G + +      M
Sbjct: 41  FQGTILQEELDEVTKKRLKKEYDSITL--DHFEKETIRKAYQLAILK-GMKEAVQPNHQM 97

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V    + L+        K       TL DP  G G  LT  +N  A    H     
Sbjct: 98  TPDAVGLFVSYLVGKFMAGKDK------YTLLDPAVGAGNLLTTILNTHAASIEH----- 146

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +G +++     +           ++ ++   +   Q S     LF        + +
Sbjct: 147 ---VYGVDVDDLLLQLTYVN-------ANLQKHGVQLFNQDSLQ--PLFID-PVDLVVCD 193

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            P G  +  D+ A E + +  E   +            LF+      L+     GG    
Sbjct: 194 LPVG-YYPNDEGAKEYKVRAEEGHTYAHH---------LFIEQSLRHLK----DGGYVVA 239

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           ++ ++   + ++      ++  L E  +++ IV LP  +F +   A  + IL  +
Sbjct: 240 LIPNNLFESEQS----HLLQPLLKEEAIVQGIVQLPLSMFKQEQAAKSIIILQKQ 290


>gi|288941148|ref|YP_003443388.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Allochromatium vinosum DSM 180]
 gi|288896520|gb|ADC62356.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Allochromatium vinosum DSM 180]
          Length = 310

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 25/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LI R  F        E  + PR  +     +  DP     +        + D   G+G 
Sbjct: 90  YLIGRAWFAGLEFRVDEQVLVPRSPIAELVEVGFDPWIDADRVG-----RVLDLCTGSGC 144

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               A  ++ D                ++ PE   +    +    +        S     
Sbjct: 145 IGIAAAVYLPDADVDL----------VDISPEALVIARDNVERHGVGDRVHIFESDLFA- 193

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                      +R+   +SNPP+  + E +    E  ++
Sbjct: 194 -------ALGDQRYDVIVSNPPYVSRAEFEALPTEYHNE 225


>gi|315149232|gb|EFT93248.1| N-6 DNA Methylase [Enterococcus faecalis TX0012]
          Length = 335

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 119/372 (31%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKNIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSETLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|315143413|gb|EFT87429.1| N-6 DNA Methylase [Enterococcus faecalis TX2141]
          Length = 335

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYNTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|307947067|ref|ZP_07662402.1| type II restriction enzyme, methylase subunit [Roseibium sp.
           TrichSKD4]
 gi|307770731|gb|EFO29957.1| type II restriction enzyme, methylase subunit [Roseibium sp.
           TrichSKD4]
          Length = 1311

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 79/268 (29%), Gaps = 40/268 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87
           +     L   E          + +  A       L+S  K    +      +        
Sbjct: 280 VYRLIFLMVAEDRNLLHPEKAKPEARALYAQGYSLQSLRKQCYRAATWDKHHDRYEGVKI 339

Query: 88  -LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L        L +    F+++     E     +    +E    L  +      + ++
Sbjct: 340 VFRALTQGQPALALPALGGLFAEDRLPHLETARLRNRAF-MEALYRLSWLADKAGMVPVN 398

Query: 147 PDTVPDRVMSNIYEHLIR------------RFGSEVSEGAED-------FMTPRDVVHLA 187
              +    + ++YE L+              F SE +E   +       + TP  +V   
Sbjct: 399 WRAMETEELGSVYESLLELQPQLGDDGKTLVFASEAAEQKGNQRKTTGSYYTPDSLVQAL 458

Query: 188 TALLLDPD------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
               LDP       +A       +  ++ DP CG+G FL  A   +A   +  +      
Sbjct: 459 LDTALDPVLDKTEGEADDPAKALLKLSVIDPACGSGHFLLAAARRIATRLARIRAEGTPS 518

Query: 242 PHGQELEPETHAVC-VAGMLIRRLESDP 268
                L    HA+  VA   I  ++ +P
Sbjct: 519 -----LADFRHALRDVARCCIHGVDRNP 541


>gi|253570892|ref|ZP_04848300.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839841|gb|EES67924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1000

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 113/402 (28%), Gaps = 84/402 (20%)

Query: 164 RRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             +     E     F TP +V      +L          SP     + D  CG G F   
Sbjct: 59  HEYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF-- 106

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             NH+ +  +          +G +++ +  +V                 L  +       
Sbjct: 107 --NHLPNLHN---------AYGFDIDGKAVSVAR--------------YLYPDAHIEKCD 141

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +  +  +RF   + NPPF +K++                              L   + 
Sbjct: 142 LRQYYPEQRFDIVIGNPPFNQKFDY----------------------------KLSQEYY 173

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +K     N  G   I++  S +   ++G  E      +  N        L    F  T 
Sbjct: 174 MDKAYDVLNPAGILMIIVPGSFM---QSGFWEKTRIAGINSNFSFVGQTKLAPSAFAATG 230

Query: 403 I---ATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +    T + +   +            + I   +L   I      +  +  D  R+     
Sbjct: 231 VHDFNTKIMVFLRKSVHIGMRAYSAEEFITVEELKKRIGGARAMKHRLRFDLMRE----- 285

Query: 457 VSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +R + +   + +YR   Y   +KV   L       +  + +          +    + W
Sbjct: 286 TNRIDKEELELFEYRLAKYMYELKVHAKLNRYIGKTEALVTKFRNQKPPGNATREQVNQW 345

Query: 516 LDIL---KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                  K ++  I  Y  +++ V     +    +   K  +
Sbjct: 346 EKNKLTPKKVLAVIRRYITSQNTVPRKEVALVKTSYGFKLKQ 387


>gi|15611497|ref|NP_223148.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154967|gb|AAD06011.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 545

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 83/246 (33%), Gaps = 35/246 (14%)

Query: 79  SFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
              N S  S+     TN        + +    +SF D  +        +    +  K+  
Sbjct: 13  HLINVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNRYANKSLKSAH 72

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            ++       +E+  ++     + + YE   +   +        + TP  +V     L  
Sbjct: 73  NHQEL-ILKYLEMLENSSDLENLGSYYE---KELSNTTRNLEGIYYTPNRIVE---QLFT 125

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
            P D    ++        DP  G+G F+  A+              +   +G + +    
Sbjct: 126 LPKDFDTTQA-----IFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAV 171

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           A+       +R++   R D    +Q+     K      +F    +NPP+GKK+ +++   
Sbjct: 172 ALTK-----KRIKERYRLDCPNIMQKDFLSLKHAP---QFDCIFTNPPWGKKYNQNQKEN 223

Query: 313 EKEHKN 318
            K+  N
Sbjct: 224 FKQQFN 229


>gi|160946660|ref|ZP_02093863.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
 gi|158447044|gb|EDP24039.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
          Length = 2913

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+          G+    
Sbjct: 1183 FYTPKAVI--------DGVYRTLSDMGFKSGNILEPSMGVGNFI----------GNLPDE 1224

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q   L +  F+   F   +
Sbjct: 1225 MSKSKFYGVELDSVSGRIGKL-------------LYPESEVQIKGLEETSFSNNFFDVVI 1271

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++                     +  + L   +   K       GG  
Sbjct: 1272 GNIPFGEYKVNDRE--------------------YNKNNFLIHDYFFAKSIDKVRNGGII 1311

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1312 AFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1366

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1367 DSIRERDE 1374


>gi|332075661|gb|EGI86129.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 2097

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+          G+    
Sbjct: 1176 FYTPKTVI--------DGIYKTLSDMGFKQGNILEPSMGIGNFI----------GNIPDK 1217

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q   L +  F+   F   +
Sbjct: 1218 MNKSKFYGIELDSVSGRIGKL-------------LYPESEVQIKGLEETSFSNNFFDAVI 1264

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++                     +  + L   +   K       GG  
Sbjct: 1265 GNIPFGEYKVNDRE--------------------YNKNNFLIHDYFFAKSIDKVRNGGII 1304

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1305 AFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1359

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1360 DSIRERDE 1367


>gi|282851933|ref|ZP_06261293.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282556942|gb|EFB62544.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 187

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI-RRWLLENDLIEAIVALP 394
           M FL H    +    +   +AAI++  S      AGSG+S I  + +L+N+ + A + +P
Sbjct: 1   MPFLAHGLRFMSNKEHA--KAAIIIQDS------AGSGKSRITNQEILKNNTLLASIKMP 52

Query: 395 TDLFFRTNI-ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            DLF    I  T ++I       +    V+ I+  +        G K 
Sbjct: 53  YDLFVPNAIVNTSIYIFEVGVPHDFDRSVKFIDFRNDGYKRTKRGIKE 100


>gi|317144418|ref|XP_001820106.2| RNA methylase family protein [Aspergillus oryzae RIB40]
          Length = 465

 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 92/355 (25%), Gaps = 66/355 (18%)

Query: 19  AEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
           A+         D F  V   FT+           + A+ +   +F     D    +K   
Sbjct: 80  ADVRRRTQHRWDEFKNVSFRFTIDSFCGKRKIEAKRAIIQ---SFSYVGFDGPIRMKNPD 136

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
             F+   ++      +T T  N  +Y  +                 IA   +  +     
Sbjct: 137 EDFWVLEDFVSDVEVATRTPGNTHAYSEALEP------RKIYLGRWIANSSRNIVSKYDL 190

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           K                         RR+ S  S  AE        + L TA +      
Sbjct: 191 KK------------------------RRYISTTSMDAE--------LSLVTANMAH---- 214

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                    R  YDP  GTG F   A +  A        P      G+E   +       
Sbjct: 215 -----AAPGRLFYDPFVGTGSFCVAAAHFGALTCGSDIDPRSFK--GREKNDKEPMGLFT 267

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDA 311
                 +ES      S         +  L   +     + +PP+G +        +D   
Sbjct: 268 NFQQYGIESKFMDAFSS-----DLTNTPLLNRQFLDGIVCDPPYGVREGLRVLGTRDGSG 322

Query: 312 VEKEHKNGELGRFGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            E+   +G    + PG        G       +           GR  + + +S 
Sbjct: 323 REEVIIDGVPAHYRPGYIPPKKPYGFEAMQNDILAFASRTLVTDGRLCMWMPTSI 377


>gi|218884514|ref|YP_002428896.1| predicted endonuclease-methyltransferase fusion protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218766130|gb|ACL11529.1| predicted endonuclease-methyltransferase fusion protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 1241

 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +  +L P++  D ++  +Y+HL+     +V     ++ TP  +       +    D L +
Sbjct: 346 ATPQLEPESARD-LLKRLYQHLVP---EDVRHNLGEYYTPDWLADFLLDRVGLSRDRLNE 401

Query: 201 ES-----PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQELEP 249
                    +   + DP CG+G FL   +  + D    H +  +++ +      G +L P
Sbjct: 402 LGSEYSLRPLEIRVLDPACGSGTFLVRYIARLRDYAREHFLEDVMLDYLLENIVGYDLNP 461

Query: 250 ETHAVCVAGMLI 261
                     L+
Sbjct: 462 LAVLAARTNYLL 473


>gi|331004624|ref|ZP_08328088.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330409649|gb|EGG89086.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2532

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 74/246 (30%), Gaps = 67/246 (27%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D       +       + +P+ GTG F+          G+  +       +G EL+
Sbjct: 1698 KVVIDAIYHTLSDMGFESGNILEPSMGTGRFI----------GNLPESMQKSKFYGIELD 1747

Query: 249  PETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
              +  +       A + ++  E                  +  F+   F   + N PFG+
Sbjct: 1748 SISGQIAKKLYPNANIQVKGFE------------------ETAFSNNLFDIAVGNVPFGE 1789

Query: 304  KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                D++                        + L   +   K        G  A + SS 
Sbjct: 1790 YRVSDREYE--------------------KNNFLIHDYFFAKTLDKVRSKGVIAFMTSSG 1829

Query: 364  PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRG 420
             +          +IRR++ E       + LP + F     T + + +  L        R 
Sbjct: 1830 TMDKRN-----EDIRRYISERAEFLGAIRLPNNTFKGEAGTEVTSDIIFLKK------RD 1878

Query: 421  KVQLIN 426
            ++  I+
Sbjct: 1879 RLLKID 1884


>gi|307700181|ref|ZP_07637224.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614640|gb|EFN93866.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 621

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 61/201 (30%), Gaps = 18/201 (8%)

Query: 140 FSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            SG + +P + +    ++  YE L+    S     A  F TP D                
Sbjct: 141 VSGDDTNPLEDLSIGEIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMA---------- 190

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            +     + T  DP CG G         VA       +   LV    +      AV + G
Sbjct: 191 VQSRDFPVGTWLDPCCGVGN--LAWHLVVAQSNPARFVRENLVLIDVDETALRSAVALLG 248

Query: 259 M-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              +   + +    L         LSK       F   + NPP+ +   K+   +E    
Sbjct: 249 ADFLSGGDHEGLAQLWAKASNRDFLSKSGLAPHEF--VIVNPPYAR--AKESPGLECAAS 304

Query: 318 NGELGRFGPGLPKISDGSMLF 338
                 F   + K S G +  
Sbjct: 305 REYFAYFLEKIAKTSRGFIAV 325


>gi|288801314|ref|ZP_06406768.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331697|gb|EFC70181.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 588

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 34/301 (11%)

Query: 127 LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++K    + + + F       HP  +    M +++E +I               TP+ V 
Sbjct: 47  IDKEDEDFDLLQEFVSKIHHFHPAPMTIEDMISLFEFVIS---PADRIVTGAVYTPKYVR 103

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGSHHKIPPILVPH 243
                  L                + D  CG GGFL +    + +  G           +
Sbjct: 104 ENIIETCL-----KIPNEHLQHIRVADIACGCGGFLMNVALFLHNNTGRSFYDIYQESVY 158

Query: 244 G---QELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           G   QE   E   + ++ + +    + D   ++ +        ++       F   + NP
Sbjct: 159 GIDIQEYSVERTKILLSLLALLHGEDLDFDFNILQANTLNFNTTEWNQDYTHFDVIVGNP 218

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+     ++ DA  KE            +       +              N GGR   +
Sbjct: 219 PY--VCSRNVDATTKEKM------LQYEVCLSGHSDLYIPFFQIAT--EMLNDGGRLGFI 268

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---PTDLFFRTNIATYLWILSNRKTE 416
             +S + +         +R +      I  I  L      +F + +  T L+ L+  +  
Sbjct: 269 TMNSFIRSVNG----RAVRNYFSRG--IHDISILDFRGYQVFQKKSTYTCLFFLTKNQAS 322

Query: 417 E 417
           +
Sbjct: 323 D 323


>gi|260771707|ref|ZP_05880626.1| hypothetical protein VIB_000146 [Vibrio metschnikovii CIP 69.14]
 gi|260613291|gb|EEX38491.1| hypothetical protein VIB_000146 [Vibrio metschnikovii CIP 69.14]
          Length = 46

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 4  FTGSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRR 43
                 L   +W +   L  + K    ++   +L  TLLR 
Sbjct: 2  NQQQIKQLETKLWVSTNSLRANSKLTAAEYKDPVLGLTLLRY 43


>gi|254384443|ref|ZP_04999784.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343329|gb|EDX24295.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 1384

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 51/183 (27%)

Query: 149 TVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           T+    +  IYE L+                       +    + TP  +V +     LD
Sbjct: 425 TLDAEELGVIYESLLELVPQYSATEQTFELVNRAGNERKKTGSYYTPSSLVEVLLDSTLD 484

Query: 194 P-------------------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-- 232
           P                   D     E   +  T+ DP CG+G FL  A   +A   +  
Sbjct: 485 PVIDEAQKRGEAAAAEAGQIDAREAVERELLSLTVCDPACGSGHFLVAAARRIAKRVAAV 544

Query: 233 ------------HHKIPPILVP--HGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQ 277
                        H +  ++    +G +L P    +    + +  LE       L  +I+
Sbjct: 545 RDRTPEPTPESIRHALHDVIAKCVYGVDLNPMAVELAKVSLWMEALEPGKALGFLDAHIK 604

Query: 278 QGS 280
            G+
Sbjct: 605 HGN 607


>gi|298207444|ref|YP_003715623.1| Type II restriction enzyme, methylase subunit [Croceibacter
           atlanticus HTCC2559]
 gi|83850080|gb|EAP87948.1| Type II restriction enzyme, methylase subunit [Croceibacter
           atlanticus HTCC2559]
          Length = 1020

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 59/219 (26%), Gaps = 19/219 (8%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            L  ++            K  +     +   +   +    F    E              
Sbjct: 227 FLEYIDSLRLDLARGFYAKDNSLTPQQLTEATQKTIDRLVFVRFLEDKQIEFEEYINELK 286

Query: 100 LESYIASFSDNAKAIFEDFDFS-STIARLEKAGLLYKICKNFS------GIELHPDTVPD 152
                   S      +    F  S I +    G+   + ++            + +++P 
Sbjct: 287 DWKEFVQLSKMFDGKYNGIVFKESFIDKPSFGGIDKGLFQDLCYDISSKESPYNFNSIPV 346

Query: 153 RVMSNIYEHLIRRFGSEVS------------EGAEDFMTPRDVVHLATALLLDPDDALFK 200
            ++ +IYE  + +  S               +    F TP+ +V       +        
Sbjct: 347 HILGSIYERFLGKVVSIEGGKVDIIQKPEVRKAGGVFYTPKYIVDYIIDKSVGKLIKGKT 406

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
                  +  D +CG+G FL     ++ D   ++ +  +
Sbjct: 407 PKEIDKLSFADISCGSGSFLIGVYEYLIDYHKNYYVDKL 445


>gi|330838576|ref|YP_004413156.1| N-6 DNA methylase [Selenomonas sputigena ATCC 35185]
 gi|329746340|gb|AEB99696.1| N-6 DNA methylase [Selenomonas sputigena ATCC 35185]
          Length = 1191

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +++   ++NPP+           E   K              ++ S L ++ L   L+  
Sbjct: 489 QKYDVIVTNPPYLGSTRFSFKLNEYVKKYFP-----------NEKSDLSMVMLKKSLQET 537

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL- 407
               G  A V ++S +    + S   ++R ++ ++  I+ +V   T+LF       + + 
Sbjct: 538 AKTNGYVAFVTTASWM----SLSSFEKLRSYMYKDCAIDTLVDCGTELFEGKVGHNSIVS 593

Query: 408 WILSNRKTEERRGKVQLIN--ATDLWTSIRNEGKKRRII--NDDQRRQI 452
           W++   K   R   V+L++   +           K+       +   +I
Sbjct: 594 WVVRKTKFNYRMTAVRLVDYCYSRRDEKEVEFFNKKNYFVATQENFSKI 642


>gi|87124661|ref|ZP_01080509.1| hypothetical protein RS9917_00527 [Synechococcus sp. RS9917]
 gi|86167540|gb|EAQ68799.1| hypothetical protein RS9917_00527 [Synechococcus sp. RS9917]
          Length = 1379

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 31/145 (21%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA 223
           +E    +    TPR +        L P     +  P   +     + DP  G+G FL ++
Sbjct: 523 TEERRRSGSHYTPRSLTRPIVEEALRPWMERCEYRPKASQILDLKICDPAMGSGAFLVES 582

Query: 224 MNHVADC----------------GSH----------HKIPPILVPHGQELEPETHAVCVA 257
             ++A+                 G H           ++      +G +  P    +   
Sbjct: 583 CRYLAELLEQAWSREGLPDALKPGGHALGEEPLIYARRLIAQSCLYGVDKNPFAVNLARL 642

Query: 258 GMLIRRLESD-PRRDLSKNIQQGST 281
            + +  L  D P   +   ++ G +
Sbjct: 643 SLWLVSLSKDAPFTFVDHALKCGDS 667


>gi|194336503|ref|YP_002018297.1| putative type II DNA modification enzyme [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308980|gb|ACF43680.1| putative type II DNA modification enzyme [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1355

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 89/312 (28%), Gaps = 51/312 (16%)

Query: 21  DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG--- 77
           +L  D       ++I     L  +E            K       +  +E   + A    
Sbjct: 272 ELRPDVYFNQLLRLIYRLLFLMVIEERGMVFPKGTATKKSTIYVQHYSIERLRRQARNRS 331

Query: 78  -----YSFYNTSEYSLSTLGSTNTRNNLESYI----ASFSDNAKAIFEDFDFSSTIARLE 128
                YS       S   L                   FS     +      S+      
Sbjct: 332 LQVTCYSDGWLQLLSTFHLFEDRDGAAALGTTLLGGQLFSPANLGLLPHCTLSNKALYST 391

Query: 129 KAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLI----------------RRFGSEVS 171
              L +    +N   + ++   +      ++YE L+                R       
Sbjct: 392 LEQLCFFTLPENGQRMPVNFGGLATEEFGSVYESLLELHPFTDLLPTPLFDFRHAAGNER 451

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-----LYDPTCGTGGFLTDAMNH 226
           +    + T   +V       LDP     ++S    ++     + DP CG+G FL  A   
Sbjct: 452 KTTGSYYTHAALVESLLQSALDPHIDEAEKSTTPEKSILALKVCDPACGSGHFLIAAAQR 511

Query: 227 VADCGS--------------HHKIPPILV--PHGQELEPETHAVCVAGMLIRRLE-SDPR 269
           +A   +              HH +  ++     G ++ P    +C  G+ +  +E   P 
Sbjct: 512 IARRLARLRAGDEEPSPELLHHTLREVIGHCIFGVDINPMAAELCRVGLWLEAMEPGKPL 571

Query: 270 RDLSKNIQQGST 281
             L  +I+ G++
Sbjct: 572 SFLEHHIRVGNS 583


>gi|237748572|ref|ZP_04579052.1| methyltransferase HemK MTase hemK [Oxalobacter formigenes OXCC13]
 gi|229379934|gb|EEO30025.1| methyltransferase HemK MTase hemK [Oxalobacter formigenes OXCC13]
          Length = 279

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 50/198 (25%), Gaps = 33/198 (16%)

Query: 148 DTVPDRVMSN--IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           D V  RV      Y    R F         D + PR    L   L L        E    
Sbjct: 57  DVVSRRVCGEPVAYITGKREFFGLSFAVCPDVLIPRPETELLVELAL--------ERLPH 108

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              + D   G+G       +   D                             M      
Sbjct: 109 GGKIVDMGTGSGAIAIAIASERPDAHVFATDVSEKAL---------------NMATHNAL 153

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +  +   + +   G+         + F   +SNPP+        D+ +   + G+L RF 
Sbjct: 154 ALLKGKQTVHFSAGNWFYALKNVNETFDLIVSNPPY-------IDSKDDHLQKGDL-RFE 205

Query: 326 PGLPKISDGSMLFLMHLA 343
           P          L  + + 
Sbjct: 206 PVGALTDHADGLSALKIL 223


>gi|167747619|ref|ZP_02419746.1| hypothetical protein ANACAC_02340 [Anaerostipes caccae DSM 14662]
 gi|239625069|ref|ZP_04668100.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652981|gb|EDR97110.1| hypothetical protein ANACAC_02340 [Anaerostipes caccae DSM 14662]
 gi|239521455|gb|EEQ61321.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 2143

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 74/275 (26%), Gaps = 65/275 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              +          F TP  V       L        ++      ++ +P+ G G F +  
Sbjct: 904  EEYEQARGSINSAFYTPPVVAKSIYKAL--------EQFGFTNGSILEPSMGVGNFYSVL 955

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               + D             +G EL+  +  +      +    +   +   K   +  +  
Sbjct: 956  PEDMRDS----------RLYGVELDSISGRIAKQ---LHPHAAIEVKGFEKTKFEKDS-- 1000

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    F   + N PFG                     F P   K          +  
Sbjct: 1001 --------FDVIVGNVPFGA-----------------YKIFDPEYKKYG---FRIHDYFL 1032

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A+V +   +    +      IR++L E       V LP   F     
Sbjct: 1033 AKSMDLLRPGGIIAVVTTKFTMDKANST-----IRKYLAERADFIGAVRLPGIAFKKDAG 1087

Query: 401  TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
              + + +  L        +G V   N ++ W +I 
Sbjct: 1088 AEVTSDIIFLQK------KGSVLSTNKSEEWMNIT 1116


>gi|149174417|ref|ZP_01853043.1| type II adenine specific methyltransferase [Planctomyces maris DSM
           8797]
 gi|148846527|gb|EDL60864.1| type II adenine specific methyltransferase [Planctomyces maris DSM
           8797]
          Length = 549

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                    T  DP CG+G F+  A+          +        G +++P   A+    
Sbjct: 133 HLPEDREGLTFCDPCCGSGNFILAALE---------QGFTAENIFGFDIDPVAVAITRRR 183

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKK 304
           +       +     S NIQ    L   L  G+  F    +NPP+GKK
Sbjct: 184 LF------ERTGFDSPNIQCADFLETSLQAGQPPFDVIFTNPPWGKK 224


>gi|325853938|ref|ZP_08171454.1| hypothetical protein HMPREF9303_2022 [Prevotella denticola CRIS
           18C-A]
 gi|325484275|gb|EGC87205.1| hypothetical protein HMPREF9303_2022 [Prevotella denticola CRIS
           18C-A]
          Length = 1328

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 24/131 (18%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   +SN PFG     D    + + + G   R                +H    L+    
Sbjct: 190 FDVAVSNVPFG-----DVAVFDAQFEKGSAVRRAAAKK----------IHNYFCLKTLDT 234

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406
              GG  A+++    L      +    +R  +L    + + V +P +LF     T     
Sbjct: 235 VRDGGIVALLVPQGVLNADSNSA----VRHLMLSQADLLSAVRMPNNLFTENAGTEAGCD 290

Query: 407 LWILSNRKTEE 417
           L +L  R  +E
Sbjct: 291 LLVLQKRVGKE 301


>gi|325263025|ref|ZP_08129760.1| SNF2 family protein [Clostridium sp. D5]
 gi|324031418|gb|EGB92698.1| SNF2 family protein [Clostridium sp. D5]
          Length = 2244

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 70/258 (27%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 956  EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFF--- 1004

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+P +  +       A + +   E+  RRD       
Sbjct: 1005 -------GMLPEKMRNSRLYGVELDPVSGRIAKQLYPKADITVGGFETTDRRDF------ 1051

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         F   + N PFG+    DK                      +  +   
Sbjct: 1052 -------------FDLAIGNVPFGQYQVNDK--------------------AYNKLNFSI 1078

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +   + LP + F
Sbjct: 1079 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAF 1133

Query: 399  ---FRTNIATYLWILSNR 413
                 T + + +  L  R
Sbjct: 1134 KANAGTEVVSDIIFLQKR 1151


>gi|261496172|ref|ZP_05992578.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308124|gb|EEY09421.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 138

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSN 412
            AIVL           S +  IR ++ E   I A+V L  ++F   T   T +  +  
Sbjct: 1   MAIVLPQGRF----NNSSDKYIRDFIAERCRILAVVGLHGNVFKPHTGTKTSVLFVQK 54


>gi|207108686|ref|ZP_03242848.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 296

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 79/247 (31%), Gaps = 41/247 (16%)

Query: 81  YNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
           +N S  S+     TN        + +    +SF D  +        +    +  K    +
Sbjct: 15  FNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNH 74

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +       +E+  ++     + + YE       +        + TP  +V     L   P
Sbjct: 75  QEL-ILKYLEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTFP 127

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            D    ++        DP  G+G F+  A+              +   +G + +    A+
Sbjct: 128 KDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVAL 173

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDA 311
                         R     ++   +   KD    K   +F    +NPP+GKK+ +++  
Sbjct: 174 TK-----------KRIKERYHLDCPNIAQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKE 222

Query: 312 VEKEHKN 318
             K+  N
Sbjct: 223 TFKQKFN 229


>gi|225620244|ref|YP_002721501.1| restriction enzyme methylase subunit [Brachyspira hyodysenteriae
           WA1]
 gi|225215063|gb|ACN83797.1| restriction enzyme methylase subunit [Brachyspira hyodysenteriae
           WA1]
          Length = 1011

 Score = 43.6 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 46/155 (29%), Gaps = 16/155 (10%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP---DTVPDRVM 155
           NL            +   DF   S  + +E    + K   N     L P     +   ++
Sbjct: 270 NLLKIFEKADGRYNSGLFDFSKDSISSSIEIDNKVIKEIINELYYPLSPYEFSVISVEII 329

Query: 156 SNIYEHLIRRFGSEVS-------------EGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            N YE  + +  +                +    + TP  +V    A  +       K  
Sbjct: 330 GNAYEQFLGKTITIGKNHSAKIELKPEVRKAGGVYYTPEYIVDYIVANTVGEAIKGKKPE 389

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
                 + DP CG+G FL  A  ++ +    +   
Sbjct: 390 EIANIKILDPACGSGSFLLGAYKYLLNYHIEYYNK 424


>gi|317495997|ref|ZP_07954359.1| hypothetical protein HMPREF0432_00963 [Gemella moribillum M424]
 gi|316913901|gb|EFV35385.1| hypothetical protein HMPREF0432_00963 [Gemella moribillum M424]
          Length = 300

 Score = 43.6 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 102/296 (34%), Gaps = 47/296 (15%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +A   Y   +N        D      +  +Y+ L+ +   +        +TP +V+ +  
Sbjct: 26  EALTKYLTLENDDEYFDIVDNYDKETIRKVYQFLLLK-ALKELNNPSYDITP-EVITMYV 83

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           + L++      K       ++ D   G+G FL +    V       K          +  
Sbjct: 84  SHLIECIYGEEKI------SIADFASGSGSFLINIAALV-------KGEKDFTSIDVDSN 130

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                  +  +L       P   +++++ +           K+    +S+ PFG   + D
Sbjct: 131 YVKLQQNIFNLL-----EVPAEIINQDVLKP-------LNIKKQDVIISDVPFGYYADGD 178

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                K   +                ++LF+  +AN L       G   +V+    L   
Sbjct: 179 NSLNYKLCSSEGYSIN----------ALLFIEQVANYL----AEDGVGVLVVPKQIL--- 221

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
                E   +++L E   + A++ LP ++F  ++ A  L +++ +  ++   +V L
Sbjct: 222 ---ELEDNFKKFLEEEINLNAVITLPEEMFKNSSQAKALILITKKGQKKLPSQVFL 274


>gi|317477598|ref|ZP_07936818.1| hypothetical protein HMPREF1016_03803 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906246|gb|EFV27980.1| hypothetical protein HMPREF1016_03803 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1218

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 33/241 (13%)

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K +  ++  ++D       FLT A              P       E +P T      G+
Sbjct: 103 KVADAIVEAIWDTRIAPNVFLTPARERGFSSVPWISTTPYAEITCFEKDPAT------GL 156

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +++ L  + R  +     QG    +  + G  +   +SN PFG     D    +      
Sbjct: 157 ILKHLHPEKRVRV-----QGFERIEPKYAGY-YDVAVSNIPFG-----DVALFDPFFSTH 205

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                  G   + +   +  + +          GG  A + S   L   +       +R 
Sbjct: 206 TDPVRRQGTRALHNYFFMKSVDMVR-------EGGLVAFITSQGVLNAEQGRP----VRE 254

Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--LINATDLWTSI 434
           WL+      + + LP +LF     T + + L IL  +       + Q   I +  L   I
Sbjct: 255 WLMNRCEPVSAIRLPNNLFTEHAGTEVGSDLVILQKKAATGELSERQRDFIESRKLSNGI 314

Query: 435 R 435
           R
Sbjct: 315 R 315


>gi|225022654|ref|ZP_03711846.1| hypothetical protein CORMATOL_02697 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944562|gb|EEG25771.1| hypothetical protein CORMATOL_02697 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 521

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 73/203 (35%), Gaps = 22/203 (10%)

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM----NHVADCGSHHKIP 237
            VV     L+    D            L +P+ G G F+  A           G      
Sbjct: 20  PVVEFMLDLVGYHPDEQLH-----TLRLLEPSFGDGRFVIQAAGRLLQSWRAAGGQDPHD 74

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---GKRFHY 294
            I      E++P++       ++   +      D+++ + +   +S D  T      F +
Sbjct: 75  LIDAIRAVEIDPQSVTQFSQRLVDYLVTQRIAPDMAQKLAEAWLMSGDYLTTKFDHPFDF 134

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+ +      +A+ K+       R+   + +    + L++  +   L+L  +  G
Sbjct: 135 VVGNPPYVRH-----EAIPKDLLKKYRARYRTMVGR----ADLYIPFMEKSLDLL-SSTG 184

Query: 355 RAAIVLSSSPLFNGRAGSGESEI 377
           + + +  ++ + N    +  ++I
Sbjct: 185 KLSFITPNAWMKNDYGKALRAKI 207


>gi|78776330|ref|YP_392645.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78496870|gb|ABB43410.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 533

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 88/269 (32%), Gaps = 48/269 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+ ++   S+  +    F TP  + +L +  +L   +         ++T+ +P  G G F
Sbjct: 16  EY-VKAISSKHRKQFAQFFTPFSIANLMSKWILGNQN---------LKTVLEPAFGLGIF 65

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
               ++   D          +   G E++                        + NI   
Sbjct: 66  SRVLLSCKED----------IEIKGFEVDKIIFQKAK---------QYFSETKNCNIILQ 106

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             +  D     ++   + NPP+ K  + D   + KE +     +         +G     
Sbjct: 107 DYMYNDWKN--KYDGIICNPPYFKFHDYDNKNILKEIETNLKCKL--------NGFTNLY 156

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDL 397
                K     +  GR A V+ S  L +         ++ +L+++  +  ++ +    +L
Sbjct: 157 TLFLLKSIHQLSVNGRCAYVIPSEFLNSDYG----KLVKTYLIKSKTLRHVIVINFEENL 212

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLIN 426
           F        +   SN    E   KVQ  N
Sbjct: 213 FDDALTTASIIFCSNDNLTE---KVQFTN 238


>gi|38491999|gb|AAM03043.3| hypothetical protein [Helicobacter pylori]
          Length = 2879

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 86/280 (30%), Gaps = 53/280 (18%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L        + +++P+ GTG F+    
Sbjct: 1000 EFRRAYSSTRDAYYTP----KLVIDSIYQALDRLGFNQNNHPKEIFEPSLGTGKFI---- 1051

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1052 -------AHAPSDKNYRFVGTELDP--------------ISANISQFLYPNQVIQNTALE 1090

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G       +  E  +++      G  + ++ D           
Sbjct: 1091 NHPFHQDYDAFVGNPPYGNHKIYSSNDAELSNESVHNYFLGKAIKELKD----------- 1139

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                     G  A V+SS  +      +   ++R  + +N      + LP  +F  T   
Sbjct: 1140 --------DGIGAFVVSSWFM-----DAKNPKMREHIAKNATFLGAIRLPNSVFKATGAE 1186

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
                I+  +K  +         A   +  I N      + 
Sbjct: 1187 VTSDIVFFKKGVDEATNQSFTKAMPYYDKILNSLDDETLF 1226


>gi|304440078|ref|ZP_07399970.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304371445|gb|EFM25059.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 2076

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 72/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          GS    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GSMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP  +F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|308182626|ref|YP_003926753.1| type II adenine specific methyltransferase [Helicobacter pylori
           PeCan4]
 gi|308064811|gb|ADO06703.1| type II adenine specific methyltransferase [Helicobacter pylori
           PeCan4]
          Length = 545

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 35/216 (16%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           SF D  +        +    +  K    ++       +E+  ++     + + YE     
Sbjct: 46  SFLDFCRNHLGKNKLNKYANKSLKGTHNHQEL-ILKYLEMLENSSDLEKLGSHYEE---E 101

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             +        + TP  +V     L   P D    ++     T  DP  G+G F+  A+ 
Sbjct: 102 LSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA-----TFCDPAVGSGNFIMHALK 153

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                        +   +G + +    A+              R     ++   + + KD
Sbjct: 154 L---------GFKVENIYGYDTDAFAVALTK-----------KRIKERYHLDCPNIMQKD 193

Query: 286 LFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             + K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 194 FLSLKHTPQFDCIFTNPPWGKKYNQNQKENFKQKFN 229


>gi|323955406|gb|EGB51175.1| Alw26I/Eco31I/Esp3I family protein type II restriction m6 adenine
           DNA methyltransferase [Escherichia coli H263]
          Length = 494

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 31/234 (13%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-VCVAGMLIRRLESD 267
           + DP  G G  +T  +           +   +     E    T+A   ++ + +      
Sbjct: 8   VADPFSGDGRLITLLIKQW-MINGFPDVEWNVYLFDIENTGLTYAKNALSELKLAG---- 62

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHK-------- 317
              +++  I+      +       F   ++NPP+   K   ++ D  E   K        
Sbjct: 63  --ANINITIKNSDVFYEFKKYVDYFDCVITNPPWENIKPDSRELDFFEPSMKSMYIDSLR 120

Query: 318 --NGELGRFGPGLPKISD--GSMLFLMHLANKLELPP-NGGGRAAIVLSSSPLFNGRAGS 372
             +  L R  P         G    L  +  +L L   N  G  AIV+ +S   + ++  
Sbjct: 121 EFDDYLSRVLPYSQPKRKFAGWGTNLSRVGAELSLEICNKNGLVAIVMPASFFADEQS-- 178

Query: 373 GESEIRRWLLENDLIEAIVALP--TDLFFRTNIATYLWILSNRKTEERRGKVQL 424
               +R     +  I+ I   P    LF   ++++  +I +  K E     +QL
Sbjct: 179 --YILREKFFNSGRIDCINYYPAEAKLFGGADVSSCSFIFN--KGESLNDNIQL 228


>gi|317505134|ref|ZP_07963075.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663747|gb|EFV03473.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 292

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 35/208 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F   A       G         V    E +  
Sbjct: 111 IVSAISDALASTNLQIRRCLDPSMGMGAF---AETFAKQAG---------VVDAMEKDLL 158

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +  A   +        +       +      +L    ++    SN PFG     D  
Sbjct: 159 TARISQA---LH----PYGKGNIFVQNEPFEAIGELEDKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +   +  +            GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHNYFFVKGLDCIK-------EGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF 398
            +    IRR+L++N  + + + LP+ LF
Sbjct: 260 EA----IRRYLMQNSRLISALRLPSSLF 283


>gi|260583299|ref|ZP_05851074.1| adenine specific DNA methyltransferase [Haemophilus influenzae
           NT127]
 gi|260093659|gb|EEW77572.1| adenine specific DNA methyltransferase [Haemophilus influenzae
           NT127]
          Length = 1054

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 49/430 (11%), Positives = 122/430 (28%), Gaps = 96/430 (22%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHL 162
             F  N  +     +    I  +    +   +C +   I       T  +  + + YE  
Sbjct: 248 NPFLRNLFSYISGVELDDRIKWIVDHLVEIFLCSDVKKILENYGRSTKTNEPIIHFYETF 307

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLD----------------------------- 193
           +  + S + +    + TP  VV+     + D                             
Sbjct: 308 LSEYDSSLRKARGVWYTPAPVVNFIVRAVDDILKTEFGLADGLADDSKITIQEDVATKKR 367

Query: 194 --PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---------SHHKIPPILVP 242
                 +  +       + DP  GTG FL+  + H+             S+ +   I   
Sbjct: 368 GGGSKLVKIDKEVHRVQILDPATGTGTFLSSVVKHIYANHFANMGGMWSSYVEENLIPRL 427

Query: 243 HGQELEPETHAVCVAGMLIR-----------------------RLESDPRRDLSKNIQQG 279
           +G E+   ++A+    + +                            D     +  +   
Sbjct: 428 NGFEILMASYAMAHLQLDLLLTSQGYQHTKNQRFKIYLTNSLEEYHEDTGTLFTSWLSNE 487

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +  +  +         + NPP+          +    ++ +         +  +    ++
Sbjct: 488 ANEANYIKRDTPVMVVMGNPPYSVSSNNKSSWILNLLEDYKKN----LNERKINLDDDYI 543

Query: 340 MHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--- 395
             +   +  +  N  G  A + ++S +     G    ++R+ LLE+     I+ L     
Sbjct: 544 KFIRYGQYFIDKNENGILAYISNNSFI----DGITHRQMRKSLLESFDKIYILDLHGSTK 599

Query: 396 ------------DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
                       ++F     ++  +++ + +K ++   +V   +             K  
Sbjct: 600 KKEESPDGSKDENVFDIMQGVSINIFVKTGKKNKDDLAQVFHCDLYG------KRDDKYN 653

Query: 443 IINDDQRRQI 452
           ++ND     I
Sbjct: 654 LLNDQSLDSI 663


>gi|157953703|ref|YP_001498594.1| hypothetical protein AR158_C513L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068351|gb|ABU44058.1| hypothetical protein AR158_C513L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 369

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 92/287 (32%), Gaps = 68/287 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++ G +       F TP+ +            D +F+      +++ +P+CG+G FL D 
Sbjct: 12  KKLGMKHRSKMGIFFTPKSL-----------RDIVFQHIHINPQSVLEPSCGSGEFLIDC 60

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D              G EL+     V         +                T  
Sbjct: 61  ETRFPDAN----------ITGVELDVTLAQVSKENTTRTIIH---------------TQD 95

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F G +F   + NPPF +       AV K+   G                 L++  L 
Sbjct: 96  FLTFVGGKFDLIIGNPPFVQM-----KAVNKQASTGRSN--------------LYIEILF 136

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTDLFFRT 401
             +    N  G  A+VL S+ +     G      R  +L   +I    I       F  T
Sbjct: 137 KCMTQHLNDNGVLAMVLPSTIM----NGHFSRPTRELILSKKIIHFETI---RDHTFKDT 189

Query: 402 NIATYLWILSNRKTEERRGKVQLI---NATDLWTSIRNEGKKRRIIN 445
                + ++ N   +      + I   NA +L T++ +  ++ + +N
Sbjct: 190 KAGVSILVVQNTPGDNLNYNFEGIITENAREL-TAMTSGLRRLKDLN 235


>gi|113461091|ref|YP_719159.1| peptide release factor glutamine N(5)-methylase [Haemophilus somnus
           129PT]
 gi|112823134|gb|ABI25223.1| [protein release factor]-glutamine N5-methyltransferase
           [Haemophilus somnus 129PT]
          Length = 301

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 70/256 (27%), Gaps = 46/256 (17%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR- 165
           F + AK  F D    + +               FS   L  D      +  + E L+RR 
Sbjct: 15  FENVAKDPFLDAKVDANLLLQTVTKRSKSAILAFSETLLTEDE-----LKQLTELLVRRA 69

Query: 166 ----FGSEVSEG---------AEDFMTPRDVVHLATA--LLLDPDDALFKESPGMIRTLY 210
                   + E          A   + PR    +     L+        K+       + 
Sbjct: 70  KGEPMAYVLGETEFWTLNLQVAPYTLIPRPDTEILVEQALVCIQLLKKSKDFTQSSIRIL 129

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D   GTG       + +   G H          G ++  +   +     +   L      
Sbjct: 130 DLGTGTGAIALALADELKKSGQH------FEIFGLDVIADAVKLAKTNAVRNHLTEVQFL 183

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +   Q             +F   +SNPP+           E +H N    RF P    
Sbjct: 184 QSNWFEQ----------VTGQFDLIVSNPPYID--------AEDQHLNQGDVRFEPLTAL 225

Query: 331 ISDGS-MLFLMHLANK 345
           +++      L ++  +
Sbjct: 226 VAEKKGYADLQYIIEQ 241


>gi|315174324|gb|EFU18341.1| N-6 DNA Methylase [Enterococcus faecalis TX1346]
          Length = 335

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKISGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|306821025|ref|ZP_07454644.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550966|gb|EFM38938.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 2662

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 59/240 (24%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+                +       + +P+ G G F+          G+    
Sbjct: 939  FYTPKSVIDSI--------YTTLSDMGFKGGNILEPSMGVGNFI----------GNLPDE 980

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  + ++             P  D+     + ST     F+   F   +
Sbjct: 981  MERSKFYGVELDSISGSIARL--------LYPNSDIQIKGFEEST-----FSNNFFDVAI 1027

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG                     F     + +  + L   +   K       GG  
Sbjct: 1028 GNVPFGD--------------------FKLNDREYNKNNFLIHDYFFAKSIDKVRNGGII 1067

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  IR+++         + LP D F     T + + +  L  R
Sbjct: 1068 AFITSSGTM-----DKKDESIRKYINARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1122


>gi|229163631|ref|ZP_04291580.1| hypothetical protein bcere0009_43970 [Bacillus cereus R309803]
 gi|228619881|gb|EEK76758.1| hypothetical protein bcere0009_43970 [Bacillus cereus R309803]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|259508595|ref|ZP_05751495.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259163821|gb|EEW48375.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 427

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---LYDPTC 214
            YE  + ++  E  + A  + TP  VV     ++ D     F ++ G         DP  
Sbjct: 220 FYEDFLAKYDPEARKQAGVYYTPTSVVQCQVRMVDDVLRNRFGQTLGFGSKSVVTLDPAT 279

Query: 215 GTGGFLTDAMNHVADCGSHHKIP 237
           G+G +    ++   +     + P
Sbjct: 280 GSGTYPLAVIDQAVETAHIERGP 302


>gi|210134644|ref|YP_002301083.1| DNA methylase [Helicobacter pylori P12]
 gi|210132612|gb|ACJ07603.1| DNA methylase [Helicobacter pylori P12]
          Length = 2808

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 71/454 (15%), Positives = 138/454 (30%), Gaps = 80/454 (17%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            + TP     L    +    + L   +    + +++P+ GTG F+           +H   
Sbjct: 975  YYTP----KLVIDSIYQALNQLGFNNDNHQKEIFEPSLGTGKFI-----------AHAPS 1019

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   G EL+P              + +   + L  N    +T  ++    + +   +
Sbjct: 1020 DKNYRFMGTELDP--------------ISASISQFLYPNQVIQNTALENHQFYQDYDAFV 1065

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             NPP+G    K     +KE  N  +  +  G                 +L+      G  
Sbjct: 1066 GNPPYGN--HKIYSFYDKELSNESVHNYFLGK-------------AIKELK----DDGIG 1106

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            A V+SS  +      +   ++R  + +N      + LP  +F  T       I+  +K  
Sbjct: 1107 AFVVSSWFM-----DAKNPKMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGV 1161

Query: 417  ERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILDIYVS---RENGK 463
            ++        A   +  I N          +  +        + +I++   S    +  K
Sbjct: 1162 DKATNQSFTKAMPYYDKIINGLDDDTLFALQNNRFDSFIPSDQLKIVNAIASHFGFQQEK 1221

Query: 464  FSRM---LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDIL 519
              R    +D   FGY+         +   +DK G   +   + T  +    H    L  L
Sbjct: 1222 LQRWYEKIDTANFGYKEQDYEI---IKDFMDKVGENNIHLNEQTLNEYFIHHPENILGHL 1278

Query: 520  KPMMQQIYPYGWAESFVKESIKSNEAKTLKV-----KASKSFIVAFINAFGRKDPRADPV 574
                 +       E   K  +++ E K+L +     +A +                   +
Sbjct: 1279 SLEKTRYSSEVNGEQIYKYELQALEDKSLDLSQALNQAIEKLPKGVYQYHKTTLKTDTLI 1338

Query: 575  TDVNGE--WIPDTNLTEYENVPYLESIQDYFVRE 606
             D N E        +   E    ++    YF  E
Sbjct: 1339 IDTNNERYQEVQKLIKNLERGELVKWDDLYFQLE 1372


>gi|23577984|ref|NP_702932.1| hypothetical protein CE2P014 [Corynebacterium efficiens YS-314]
 gi|23494810|dbj|BAC19774.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 554

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---LYDPTC 214
            YE  + ++  E  + A  + TP  VV     ++ D     F ++ G         DP  
Sbjct: 325 FYEDFLAKYDPEARKQAGVYYTPTSVVQCQVRMVDDVLRNRFGQTLGFGSKSVVTLDPAT 384

Query: 215 GTGGFLTDAMNHVADCGSHHKIP 237
           G+G +    ++   +     + P
Sbjct: 385 GSGTYPLAVIDQAVETAHIERGP 407


>gi|159030874|emb|CAO88553.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 667

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 15/194 (7%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYS-LSTLGSTNTRN 98
            L   LE  R  +            D    + + +   Y  +    +S +        R 
Sbjct: 218 YLHKLLESFRKELLPNLKLNSEDQKDYSFSDIYAQTIAYGLFTARVFSYVKNPKRDFNRY 277

Query: 99  NLESYIASFSDNAKAIFEDF------DFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
           +    +   +   + +F+D       +    +                  I  +      
Sbjct: 278 HTWQELPETNPFLRELFKDVSQRPAAELGDELIDSIGEAFGILRAAKMEAILTDFRNKMN 337

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--- 207
            + ++   YE  +  +  ++ E    + TP  VV      + +     F +  G+     
Sbjct: 338 REDIVIRFYEDFLAAYKPQMREKRGVYYTPEPVVSYIVRSVDELIKDKFNKPLGIADPEV 397

Query: 208 TLYDPTCGTGGFLT 221
            + DP CGTG FL 
Sbjct: 398 MILDPACGTGTFLL 411


>gi|304310355|ref|YP_003809953.1| hypothetical protein HDN1F_07090 [gamma proteobacterium HdN1]
 gi|301796088|emb|CBL44292.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 1305

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 76/281 (27%), Gaps = 48/281 (17%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
               +  R A  E Y      ++ L+   +      +         L     R  L +  
Sbjct: 320 SKEAQAARRAYAEGYALGRLRDLCLKRRARNRYDDHWQALRIVFKGLSQGEPRLALPALG 379

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
             F+ +     +    S+         L +   K      +    +    + ++YE L+ 
Sbjct: 380 GLFAQSQCPALDAASLSNAHLLAAMQQLRWASHKGVLA-PVDYRNMGAEELGSVYESLLE 438

Query: 164 ---------RRF-----------GSEVSEGAEDFMTP----RDVVHLATALLLDPDDALF 199
                    R+F                + +  + TP    ++++  A   +++   A  
Sbjct: 439 LVPEIDLPARKFGFVGLTSEGSTAGNARKLSGSYYTPDSLVQELIKSALDPVIEQRLAAQ 498

Query: 200 KESPG---MIRTLYDPTCGTGGFLTDAMNHVADC----------GSHHKIPPILV----- 241
            ESP    +   + DP CG+G FL  A   +A+                           
Sbjct: 499 PESPVEALLAIRVIDPACGSGHFLLAAARRLAEKLAQLRAASSENGEQSEQDFRHALREV 558

Query: 242 ----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 G +  P    +    + +   E         +  Q
Sbjct: 559 IATCIFGVDRNPMAVELARTALWLEGFEEGRPLGFLDHHLQ 599


>gi|229093734|ref|ZP_04224833.1| hypothetical protein bcere0021_44580 [Bacillus cereus Rock3-42]
 gi|228689619|gb|EEL43427.1| hypothetical protein bcere0021_44580 [Bacillus cereus Rock3-42]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLLFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|190404406|ref|YP_001961037.1| rcorf62 [Agrobacterium rhizogenes]
 gi|158322202|gb|ABW33619.1| rcorf62 [Agrobacterium rhizogenes]
          Length = 1702

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 59/219 (26%), Gaps = 54/219 (24%)

Query: 204 GMIRTLYDPTCGTGGF--LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                + +P  GTG F  L  A                    G EL+P T  +       
Sbjct: 189 WCGGRMLEPGIGTGLFPALMPAA-----------FRDRTFVTGVELDPVTARIVKL---- 233

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                         I  G     DL     +   + NPPF  +       V  +     L
Sbjct: 234 --------LQPKARIINGDFARADLAP--IYDLAIGNPPFSDR------TVRSDRTYRSL 277

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G             +L               G  AA V SS  +    A +     R ++
Sbjct: 278 GLRLHDYFITRSIDLL-------------KPGALAAFVTSSGTMDKADATA-----REYI 319

Query: 382 LENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            +   + A + LP   F     T++   L     RK  E
Sbjct: 320 AKTADLIAAIRLPEGSFRRDAGTDVVVDLLFFRKRKVGE 358


>gi|302663036|ref|XP_003023166.1| hypothetical protein TRV_02688 [Trichophyton verrucosum HKI 0517]
 gi|291187148|gb|EFE42548.1| hypothetical protein TRV_02688 [Trichophyton verrucosum HKI 0517]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E    T    +A      L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAVTCGSD--IDGRSFRGKEATSNTETGVIANFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            S      +         +  L + + F   + +PP+G +        + + + GEL  F
Sbjct: 271 LSRFLDTFTS-----DLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMF 325

Query: 325 G 325
            
Sbjct: 326 Q 326


>gi|196032692|ref|ZP_03100105.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228929691|ref|ZP_04092709.1| hypothetical protein bthur0010_43750 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948368|ref|ZP_04110651.1| hypothetical protein bthur0007_44940 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195994121|gb|EDX58076.1| conserved hypothetical protein [Bacillus cereus W]
 gi|228811355|gb|EEM57693.1| hypothetical protein bthur0007_44940 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830078|gb|EEM75697.1| hypothetical protein bthur0010_43750 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|134101640|ref|YP_001107301.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003192|ref|ZP_06561165.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914263|emb|CAM04376.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1218

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 51/427 (11%), Positives = 110/427 (25%), Gaps = 76/427 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           +L    +R  E         +         +    E++ +                + + 
Sbjct: 83  VLGTVFVRFCEDNGLIPDPFLAGWGERLAEAEERHEAYFRERPQD-----NDRDWIIAAF 137

Query: 95  NTRNNLESYIASFSDNAKAIF----EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           +T            D            F+ +S + R  +         +    +     +
Sbjct: 138 DTLAAAHPTAKGLFDRNHNPLWEITPSFEAASDLIRFWRRRGDNGHVHH----DFTDPEL 193

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             R + ++Y++L         +      TP  V      L L P     +E         
Sbjct: 194 DTRFLGDLYQNL----SENARKTYALLQTPEFVEEFVLDLTLTP---AIEEFGLDGLRTI 246

Query: 211 DPTCGTGGFLTDAMNHV------ADCGSHHKI---PPILVPHGQELEPETHAVCVAGM-- 259
           DP CG+G FL    + +       + G+         +   HG +  P   ++    +  
Sbjct: 247 DPACGSGHFLLGIFDRLLTRWRAKEPGTDSWTLIRRSLESVHGCDKNPFAVSIARFRLLV 306

Query: 260 --------------------------LIRRLESDPRRDLSKNIQQGSTL----------S 283
                                     LI    +    D     ++  T            
Sbjct: 307 AALRAAGDARLDGAAEFPINVAVGDSLIHGRGAPRPEDELFAAEEAHTYATEDVNEHVRD 366

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            DL     +H  + NPP+          V+ + +N       P +        +      
Sbjct: 367 YDLLGRASYHVVVGNPPYIT--------VKDKQENANYRTLYPDVCSGKYALSVPFAKRL 418

Query: 344 NKLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +L +  +G   RA  V   +     +   G+  I+ +  +   +  ++           
Sbjct: 419 FQLAVFTSGDDRRAGFVGQITANSFMKREFGKKLIQDYFAQKIHLTHVIDTSGAYIPGHG 478

Query: 403 IATYLWI 409
             T + +
Sbjct: 479 TPTVILV 485


>gi|301056146|ref|YP_003794357.1| putative adenine-specific DNA methyltransferase [Bacillus anthracis
           CI]
 gi|300378315|gb|ADK07219.1| possible adenine-specific DNA methyltransferase [Bacillus cereus
           biovar anthracis str. CI]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAQE-------NITMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|240142784|ref|YP_002967297.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens AM1]
 gi|240012731|gb|ACS43956.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens AM1]
          Length = 1329

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 112/385 (29%), Gaps = 67/385 (17%)

Query: 33  KVILPFTLLRRLECA--LEPTRSA--VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
            ++     L   E    L P ++A   R++Y      +   ++ ++ +GY  Y+    +L
Sbjct: 300 HLVYRLIFLFVAEDRDLLHPRQTAAIKRQRYAQGYSVSALRQASIRRSGYDGYSDRWEAL 359

Query: 89  ----STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI- 143
                 L        L      F        E    S+    L KA       K   G+ 
Sbjct: 360 KIVFEALAEGQDELGLPPLAGLFVSQHMDDLEQNALSN--RDLLKAIYRLAWLKTDDGVM 417

Query: 144 ELHPDTVPDRVMSNIYEHLIRR------------FGS------EVSEGAEDFMTPRDVVH 185
            ++   +    + ++YE L+              F           +    + TP  +V 
Sbjct: 418 PVNWRDMQTEELGSVYESLLELTPRITADGREMLFAEGLETRGNARKTTGSYYTPDSLVQ 477

Query: 186 LATALLLDPDDALFKESPG------MIRTLYDPTCGTGGFL------------------T 221
           +     +DP                +   + DP CG+G FL                   
Sbjct: 478 VLLDTTIDPVMDQAVAGAADPVRALLGLRVIDPACGSGHFLLAAARRLAARVARARNDGV 537

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGS 280
            +     D     +       HG +  P    +    + I  +E   P   L  NI  G 
Sbjct: 538 ASAEQYRDA---VRDVVRQCIHGVDRNPMAVDLTKVALWIESIEPGKPLGFLDGNIVCGD 594

Query: 281 TLSKDLFTGKRFHYCL-SNPP---FGKKWEKDKDA------VEKEHKNGELGRFGPGLPK 330
            L      G++    L +  P   +      D+DA       E++ ++G L  F     K
Sbjct: 595 ALLGTFGYGEKLDAVLDAGIPEEAYKPLTGDDRDACRRFVLAERDDRSGALNLFDRKGWK 654

Query: 331 ISDGSMLFLMHLANKLELPPNGGGR 355
             +     L+     +     G  +
Sbjct: 655 PLEKHTAELISTFKAMSEDTPGQIK 679


>gi|222098112|ref|YP_002532169.1| adenine-specific DNA methyltransferase [Bacillus cereus Q1]
 gi|221242170|gb|ACM14880.1| possible adenine-specific DNA methyltransferase [Bacillus cereus
           Q1]
          Length = 330

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAQE-------NVTMSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 293


>gi|307067514|ref|YP_003876480.1| DNA methylase [Streptococcus pneumoniae AP200]
 gi|306409051|gb|ADM84478.1| DNA methylase [Streptococcus pneumoniae AP200]
          Length = 2098

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IKGYKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINSRCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|206977159|ref|ZP_03238058.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217962126|ref|YP_002340696.1| hypothetical protein BCAH187_A4773 [Bacillus cereus AH187]
 gi|229141375|ref|ZP_04269913.1| hypothetical protein bcere0013_44680 [Bacillus cereus BDRD-ST26]
 gi|229198798|ref|ZP_04325493.1| hypothetical protein bcere0001_43190 [Bacillus cereus m1293]
 gi|206744644|gb|EDZ56052.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217063176|gb|ACJ77426.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228584671|gb|EEK42794.1| hypothetical protein bcere0001_43190 [Bacillus cereus m1293]
 gi|228642156|gb|EEK98449.1| hypothetical protein bcere0013_44680 [Bacillus cereus BDRD-ST26]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAQE-------NVTMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|165869670|ref|ZP_02214328.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167633849|ref|ZP_02392172.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638234|ref|ZP_02396512.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170685851|ref|ZP_02877074.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170705404|ref|ZP_02895868.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177651250|ref|ZP_02934081.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190569068|ref|ZP_03021968.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817429|ref|YP_002817438.1| hypothetical protein BAMEG_4921 [Bacillus anthracis str. CDC 684]
 gi|229603238|ref|YP_002868920.1| hypothetical protein BAA_4900 [Bacillus anthracis str. A0248]
 gi|254687450|ref|ZP_05151306.1| hypothetical protein BantC_26890 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736750|ref|ZP_05194456.1| hypothetical protein BantWNA_16416 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741787|ref|ZP_05199474.1| hypothetical protein BantKB_12353 [Bacillus anthracis str. Kruger
           B]
 gi|254754615|ref|ZP_05206650.1| hypothetical protein BantV_19202 [Bacillus anthracis str. Vollum]
 gi|254757447|ref|ZP_05209474.1| hypothetical protein BantA9_03991 [Bacillus anthracis str.
           Australia 94]
 gi|164714499|gb|EDR20018.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167514051|gb|EDR89419.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167530650|gb|EDR93352.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170129529|gb|EDS98392.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170670315|gb|EDT21055.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172083076|gb|EDT68138.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190559850|gb|EDV13835.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227003306|gb|ACP13049.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229267646|gb|ACQ49283.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|160944382|ref|ZP_02091610.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
 gi|158444164|gb|EDP21168.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2409

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 71/257 (27%), Gaps = 70/257 (27%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  S       T   V+           DA+ K        + +P+ G G F     
Sbjct: 872  EYAAARSSTLNAHYTAPVVIRSI-------YDAVEKMGFQSGN-ILEPSMGVGNFF---- 919

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279
                  G           +G EL+  T  +       A + +   E+  RRD        
Sbjct: 920  ------GMLPDTMQDSRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 966

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        +   + N PFG+    DK             + G  +           
Sbjct: 967  ------------YDLAVGNVPFGQYKVNDKA----------YNKLGFSIHN--------- 995

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A V            S +S  R+ + E   +   + LP + F 
Sbjct: 996  -YFFAKAIDQVRPGGIIAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 1049

Query: 399  --FRTNIATYLWILSNR 413
                T++ + +  L  R
Sbjct: 1050 ANAGTDVVSDIIFLQKR 1066


>gi|52140869|ref|YP_085960.1| adenine-specific DNA methyltransferase [Bacillus cereus E33L]
 gi|51974338|gb|AAU15888.1| possible adenine-specific DNA methyltransferase [Bacillus cereus
           E33L]
          Length = 330

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 293


>gi|30264712|ref|NP_847089.1| hypothetical protein BA_4889 [Bacillus anthracis str. Ames]
 gi|47530184|ref|YP_021533.1| hypothetical protein GBAA_4889 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187530|ref|YP_030783.1| hypothetical protein BAS4536 [Bacillus anthracis str. Sterne]
 gi|65322009|ref|ZP_00394968.1| COG0827: Adenine-specific DNA methylase [Bacillus anthracis str.
           A2012]
 gi|30259387|gb|AAP28575.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47505332|gb|AAT34008.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181457|gb|AAT56833.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
          Length = 330

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 293


>gi|159029065|emb|CAO90051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 575

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 78/252 (30%), Gaps = 43/252 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   +  NI+E        E       F +  D++ +    +    +   +++  +  
Sbjct: 286 SKIRPAIFGNIFEG--TANAEERHTYGMHFTSEADIMKIVRPTISRYWEEKIEQAGTIGE 343

Query: 208 -----------TLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPI 239
                       + DP CG+G FL  A   +                             
Sbjct: 344 LNTLQLELQQYKVLDPACGSGNFLYVAYQELKRIEQLLIEKIAERRRSANDQLQISFVTP 403

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------LFTG-KRF 292
              +G ++ P    +    ++I R  +  + +L++      TL  +      LFT  ++ 
Sbjct: 404 KQFYGMDINPFAVELARVTLMIARKVAIDKFNLTEASLPLDTLDSNIICADALFTDWQKA 463

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPPF    ++ +  +  ++ N   GRF                          N 
Sbjct: 464 DAIIGNPPF-LGGKQMRLNLSDDYVNKVFGRF---SEVKDSVDFCSYWFRLAH--NQLNE 517

Query: 353 GGRAAIVLSSSP 364
            GRA +V ++S 
Sbjct: 518 KGRAGLVGTNSI 529


>gi|148989741|ref|ZP_01821050.1| hypothetical protein CGSSp6BS73_00902 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924857|gb|EDK75940.1| hypothetical protein CGSSp6BS73_00902 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 317

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEMDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSDL----LKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|169824025|ref|YP_001691636.1| putative type I site-specific deoxyribonuclease [Finegoldia magna
           ATCC 29328]
 gi|167830830|dbj|BAG07746.1| putative type I site-specific deoxyribonuclease [Finegoldia magna
           ATCC 29328]
          Length = 75

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +I  + S   +   +F TP+ V  L   L++D   ++ K        +YD TC
Sbjct: 1   MISNYASNAGKSGGEFFTPQTVSKLLAKLVMDGKTSIKK--------VYDLTC 45


>gi|317129937|ref|YP_004096219.1| hypothetical protein Bcell_3246 [Bacillus cellulosilyticus DSM
           2522]
 gi|315474885|gb|ADU31488.1| hypothetical protein Bcell_3246 [Bacillus cellulosilyticus DSM
           2522]
          Length = 329

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 103/332 (31%), Gaps = 49/332 (14%)

Query: 84  SEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
             Y++   GS   ++ L   YI + S+  + IF      +   + E   L+    K  + 
Sbjct: 8   ELYTVLDNGSQILQDALNIPYIEAISEMGEVIFHQEVTHN--IKEESKQLVLDELKKITD 65

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            E   +    R +      +++  G + +      MTP  V      L+   +  L  + 
Sbjct: 66  YEAITNEEYRRAIQLA---VLK--GMKEATQPHHAMTPDAVSLFIGYLV---NKILGYDK 117

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            G    + D   G+G  LT  MN                  G E++     +      ++
Sbjct: 118 KGETAIILDQAVGSGNLLTAIMNQTEKSHG----------IGVEVDETLLKIAYTNANLQ 167

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +   D             +++    T K      S+ P G  +  D  A +   K+ E  
Sbjct: 168 KHSVDLF--------HQDSVATP--TVKNVDIIASDLPIGF-YPNDDIAKDFVLKSDEGH 216

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            F                 +  +       GG    ++ +    +  A      I++   
Sbjct: 217 SF-------------VHHLIIEQGFSHVKEGGFLVFLVPNFLFESQEAKKLHDFIKK--- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              +I + + LP  +F        + IL  +K
Sbjct: 261 -EGVIYSFLQLPKSMFKNGQWGKSILILRKKK 291


>gi|225010013|ref|ZP_03700485.1| adenine specific DNA methyltransferase [Flavobacteria bacterium
           MS024-3C]
 gi|225005492|gb|EEG43442.1| adenine specific DNA methyltransferase [Flavobacteria bacterium
           MS024-3C]
          Length = 1064

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 99/372 (26%), Gaps = 83/372 (22%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLLYKICKNFSGI--ELHP 147
            T +R      I   +   + +F      D    I  +        +  N   I      
Sbjct: 234 DTFSRQEAAELIPKSNPFLRKLFGYIAGPDIDDRIKWIVDNLAEIFLACNVEEILKNYGK 293

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            T  +  + + YE  +  +  ++ +    + TP  VV+     + D     F    G+  
Sbjct: 294 TTKMEDPIIHFYETFLAEYDPKLRKARGVWYTPAPVVNFIVRAVDDILKTEFDLPQGLAD 353

Query: 208 T-------------------------------LYDPTCGTGGFLTDAMNHV-ADCGSHHK 235
           T                               + DP  GTG FL + + HV         
Sbjct: 354 TSKTKIKVNTQMPDKNFKSGYKQVEQEVHKVQILDPATGTGTFLAEVIKHVNKKFKGQEG 413

Query: 236 IPPILV-------PHGQELEPETHAVC--VAGMLIRRLESDPRRD--------LSKNIQQ 278
           I    V        +G EL   ++A+      +L++    +P +D         S     
Sbjct: 414 IWNNYVENNLLPRLNGFELLMASYAMAHLQLNLLLKETGFEPTKDQRTRVYLTNSLEEYH 473

Query: 279 GSTLS-------------KDLFTGKRFHYCLSNPPF------GKKWEKDKDAVEKEHKNG 319
             T +               +         + NPP+        KW  D     K     
Sbjct: 474 PDTGTLFANWLSSEANEANHIKRDTPVMCVIGNPPYSGISSNNGKWISDLIEDYKYVDGV 533

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   L       + +  H   K     NG G  A +     L           +R 
Sbjct: 534 HFNERKHWLNDDYVKFLRYGQHYIEK-----NGSGVLAFINPHGFL----DNPTFRGMRW 584

Query: 380 WLLEN-DLIEAI 390
            LL+  D I  I
Sbjct: 585 HLLKTYDKIYTI 596


>gi|329769195|ref|ZP_08260615.1| hypothetical protein HMPREF0433_00379 [Gemella sanguinis M325]
 gi|328839414|gb|EGF88992.1| hypothetical protein HMPREF0433_00379 [Gemella sanguinis M325]
          Length = 300

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 97/296 (32%), Gaps = 47/296 (15%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  + Y   +N        D      +  +Y+ L+ +   +        +TP +V+ +  
Sbjct: 26  EGLIKYLTLENDDDYFDIVDNYDKETIRKVYQFLLLK-ALKELNNPSYDITP-EVITMYI 83

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           + L++      K       ++ D   G+G  L +    V       K    L     +  
Sbjct: 84  SHLIECIYGDKKV------SITDLASGSGSLLINIAALV-------KGDKELTSVDVDSN 130

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                  +  +L   +E   +  L                 K+    +S+ PFG   ++D
Sbjct: 131 YVRLQQNIFNLLETNVEIINQDALKPLNI------------KKQDVVISDVPFGYYADED 178

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                K                 S  ++LF+   AN L    +  G   +V+    L   
Sbjct: 179 NSLNYKLCSADGY----------SLNALLFIEQAANYL----DDNGVGILVIPKKVL--- 221

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
                E   +++L E+  + A++ LP ++F   +    + +++ +       +V L
Sbjct: 222 ---ELEDNFKKYLEEDINLNAVITLPDEMFKNASQQKAIILITKKGQNRLPNQVFL 274


>gi|218899793|ref|YP_002448204.1| hypothetical protein BCG9842_B0488 [Bacillus cereus G9842]
 gi|228910464|ref|ZP_04074279.1| hypothetical protein bthur0013_46110 [Bacillus thuringiensis IBL
           200]
 gi|218544628|gb|ACK97022.1| conserved hypothetical protein [Bacillus cereus G9842]
 gi|228849230|gb|EEM94069.1| hypothetical protein bthur0013_46110 [Bacillus thuringiensis IBL
           200]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|75759971|ref|ZP_00740039.1| Adenine-specific methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492529|gb|EAO55677.1| Adenine-specific methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 330

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 291


>gi|326942424|gb|AEA18320.1| adenine-specific methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|317055892|ref|YP_004104359.1| adenine specific DNA methyltransferase [Ruminococcus albus 7]
 gi|315448161|gb|ADU21725.1| adenine specific DNA methyltransferase [Ruminococcus albus 7]
          Length = 1093

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 82/287 (28%), Gaps = 81/287 (28%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-------LDPDDALFKESPGMIR-- 207
           + YE  +  +          + TP+ VV+     +           D L  E    ++  
Sbjct: 344 HFYEEFLTAYDKAQKVQRGVYYTPQPVVNFIVRAVDSILKTEFGLADGLASEETKTVKYM 403

Query: 208 -------------------TLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPILV 241
                               + DP  GTG FL   +  + D         S  +I     
Sbjct: 404 REKIRGQGMTEDTKEVPAVQILDPATGTGTFLRQTILQIYDNFRAKHKGESEEQIRKAWN 463

Query: 242 PH----------GQELEPETHAVCVA--GMLIRRLESDPRRDLSKNIQQGSTLS---KDL 286
            +          G EL    +AV      M+++    D   D   N+   ++L    KD 
Sbjct: 464 EYVPKHLLPRLNGFELMMAPYAVAHMKLAMVLKDTGYDFGGDHRLNVFLTNSLEEAGKDD 523

Query: 287 FTGKRFH---------------------YCLSNPPFG------KKWEKDKDAVEKEHKNG 319
           F    F                        + NPP+        KW  D   + +++K  
Sbjct: 524 FQMTLFDNDPLAFESIEANQAKKNNGINVIIGNPPYSGESANKGKWIMD---LMEDYKKE 580

Query: 320 ELGRFGPGLPKISDGSMLFLMHL-ANKLELPPNGGGRAAIVLSSSPL 365
             GR           +  ++  L   +L +  +G G  A +     +
Sbjct: 581 PGGRIKLQEQNYKWINDDYVKFLRYAQLFIEKSGYGIMAYICPHGYI 627


>gi|212693469|ref|ZP_03301597.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
 gi|212663982|gb|EEB24556.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 37/132 (28%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V      +L          SP     + D  CG G F     NH+ +  +  
Sbjct: 71  GQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF----NHLPNRHN-- 114

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G +++ +  AV                    +I++      D    +RF  
Sbjct: 115 -------VYGFDIDGKAVAVAK------------YLYPDAHIEKCDIRQYD--PEQRFDI 153

Query: 295 CLSNPPFGKKWE 306
            + NPPF  K++
Sbjct: 154 IIGNPPFNLKFD 165


>gi|90022890|ref|YP_528717.1| protein methyltransferase hemK [Saccharophagus degradans 2-40]
 gi|89952490|gb|ABD82505.1| modification methylase, HemK family [Saccharophagus degradans 2-40]
          Length = 288

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 34/185 (18%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +   + L+    L +++P     + D   GTG       + +          
Sbjct: 94  LIPRGDTEILVEVALELAQTLQQKNPQEHIRILDLGTGTGAIALALASELP--------- 144

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHY 294
                        T  +     + + +E   +   +   +  + L  D F+    ++FH 
Sbjct: 145 -------------TANITAVDKMPQAVELAEKNRAALGFKNVTVLHSDWFSAITLQKFHV 191

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGG 353
            +SNPP+        D  +   K G++ RF P    ++    +  + H+A   +      
Sbjct: 192 IVSNPPY-------IDEQDPHLKQGDV-RFEPLTALVAPNQGLADIQHIAEHAKQHLLPN 243

Query: 354 GRAAI 358
           G   +
Sbjct: 244 GFLCV 248


>gi|256842520|ref|ZP_05548022.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374900|ref|ZP_06984857.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|301308009|ref|ZP_07213963.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|256735876|gb|EEU49208.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267400|gb|EFI09056.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|300833479|gb|EFK64095.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 1000

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 114/396 (28%), Gaps = 79/396 (19%)

Query: 164 RRFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             +     E     F TP ++      +L           P     + D  CG G F   
Sbjct: 59  HEYAEAKKEFEMGQFFTPHEICRDMVDMLC----------PVSSEMVLDMCCGMGNFF-- 106

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             NH+ +  +          +G +++ +  +V                    +I++    
Sbjct: 107 --NHLPNPHN---------AYGFDIDGKAVSVAR------------YLYPEAHIEKCD-- 141

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +  +  +RF   + NPPF  K++                              L   + 
Sbjct: 142 IRQYYPEQRFDVIIGNPPFNLKFDY----------------------------KLSQEYY 173

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +K     N  G   +++  S +   ++G  E      +           L    F    
Sbjct: 174 MDKAYDVLNPAGILMVIVPCSFM---QSGFWEKTRIAGINGRFSFVGQTKLGPSAFAAVG 230

Query: 403 I---ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +    T + +   +      G +++  A +    I  +  K+RI      +  L   + R
Sbjct: 231 VHDFNTKIMVFLRK-----SGHIKM-QAYNAEEFITADELKKRIGEARAMKHRLRFDLMR 284

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           E  +  +  +   F Y+  K +  L+    L+K           +R   P   +    + 
Sbjct: 285 ETNRIDK-EELELFEYKLAKYMYELKAHAKLNKHIDKAEALVTKFRNQKPPENATREQVE 343

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
           +    ++ P        +     N     +V   K+
Sbjct: 344 QWEKNKLTPKKVLAVIRRYITSQNTVPRKEVALVKT 379


>gi|324328532|gb|ADY23792.1| hypothetical protein YBT020_22820 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAQE-------NITMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|297588629|ref|ZP_06947272.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
 gi|297574002|gb|EFH92723.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
          Length = 2556

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 72/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          GS    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GSMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP  +F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|196043806|ref|ZP_03111043.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|218905868|ref|YP_002453702.1| hypothetical protein BCAH820_4756 [Bacillus cereus AH820]
 gi|225866619|ref|YP_002751997.1| hypothetical protein BCA_4753 [Bacillus cereus 03BB102]
 gi|228935948|ref|ZP_04098758.1| hypothetical protein bthur0009_43930 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229124208|ref|ZP_04253400.1| hypothetical protein bcere0016_44930 [Bacillus cereus 95/8201]
 gi|229186897|ref|ZP_04314052.1| hypothetical protein bcere0004_44380 [Bacillus cereus BGSC 6E1]
 gi|196025142|gb|EDX63812.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|218538876|gb|ACK91274.1| conserved hypothetical protein [Bacillus cereus AH820]
 gi|225789238|gb|ACO29455.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|228596634|gb|EEK54299.1| hypothetical protein bcere0004_44380 [Bacillus cereus BGSC 6E1]
 gi|228659510|gb|EEL15158.1| hypothetical protein bcere0016_44930 [Bacillus cereus 95/8201]
 gi|228823716|gb|EEM69538.1| hypothetical protein bthur0009_43930 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 328

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAQE-------NITMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|49480700|ref|YP_038687.1| adenine-specific DNA methyltransferase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|118479779|ref|YP_896930.1| adenine-specific DNA methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|49332256|gb|AAT62902.1| possible adenine-specific DNA methyltransferase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118419004|gb|ABK87423.1| possible adenine-specific DNA methyltransferase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 330

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAQE-------NITMSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 293


>gi|42783820|ref|NP_981067.1| hypothetical protein BCE_4774 [Bacillus cereus ATCC 10987]
 gi|42739750|gb|AAS43675.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 330

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAQE-------NITMSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 293


>gi|289423818|ref|ZP_06425612.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289155755|gb|EFD04426.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2917

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 105/366 (28%), Gaps = 67/366 (18%)

Query: 61   AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFD 119
                   +     K   ++F  T E   S L  +   NN    I+  +       E D  
Sbjct: 1068 EKPEKTFEEVEIKKNEAHNFKITEETLPSKLSPSERLNNNLEAISMLNRVEIGERELDIT 1127

Query: 120  FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL-IRRFGSEVSEGAEDFM 178
                +A+    G L  +           D       + + E+L +  + +        F 
Sbjct: 1128 AQEVLAKYVGWGGLADVFDE------SKDGQWKEARAFLKENLSLSEYEAARESTLTSFY 1181

Query: 179  TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
            TP+ V+        D               + +P+ G G F+          G+      
Sbjct: 1182 TPKTVI--------DGIYKTLSGMGFKQGNILEPSMGIGNFI----------GNLPDEMN 1223

Query: 239  ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                +G EL+  +  +                   ++  Q   L +  F+   F   + N
Sbjct: 1224 KSKFYGVELDSVSGRIGKL-------------LYPESDIQVKGLEETGFSNNFFDIAIGN 1270

Query: 299  PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
             PFG+    D+          E  R           + L   +   K       GG  A 
Sbjct: 1271 VPFGEYKVNDR----------EYNRN----------NFLIHDYFFAKSIDKVRNGGVIAF 1310

Query: 359  VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKT 415
            + SS  +        +  +RR+L         + LP D F     T + + +  L  R +
Sbjct: 1311 ITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDS 1365

Query: 416  EERRGK 421
               R +
Sbjct: 1366 VLERDE 1371


>gi|170717667|ref|YP_001784743.1| HemK family modification methylase [Haemophilus somnus 2336]
 gi|168825796|gb|ACA31167.1| modification methylase, HemK family [Haemophilus somnus 2336]
          Length = 301

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 70/256 (27%), Gaps = 46/256 (17%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR- 165
           F + AK  F D    + +               FS   L  D      +  + E L+RR 
Sbjct: 15  FENVAKDPFLDAKVDANLLLQTVTKRSKSAILAFSETLLTEDE-----LKQLTELLVRRA 69

Query: 166 ----FGSEVSEG---------AEDFMTPRDVVHLATA--LLLDPDDALFKESPGMIRTLY 210
                   + E          A   + PR    +     L+        K+       + 
Sbjct: 70  KGEPMAYVLGETEFWTLNLQVAPYTLIPRPDTEILVEQALVCIQLLKKSKDFTQSPIRIL 129

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D   GTG       + +   G H          G ++  +   +     +   L      
Sbjct: 130 DLGTGTGAIALALADELKKSGQH------FEIFGLDVIADAVKLAKTNAVRNHLTEVQFL 183

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +   Q             +F   +SNPP+           E +H N    RF P    
Sbjct: 184 QSNWFEQ----------VTGQFDLIVSNPPYID--------AEDQHLNQGDVRFEPLTAL 225

Query: 331 ISDGS-MLFLMHLANK 345
           +++      L ++  +
Sbjct: 226 VAEKKGYADLQYIIEQ 241


>gi|92109603|ref|YP_571890.1| helicase-like [Nitrobacter hamburgensis X14]
 gi|91802685|gb|ABE65058.1| helicase-like [Nitrobacter hamburgensis X14]
          Length = 1703

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 71/231 (30%), Gaps = 62/231 (26%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA----GM 259
                + +P  GTG F       + D         +    G EL+P T  +        M
Sbjct: 185 FRGGRVLEPGIGTGLFPALMPKALRD---------VSHVTGVELDPITTRIAKLLQPRAM 235

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           ++   E   R  L ++                F   + NPPF  +  +   A        
Sbjct: 236 IVN--EDFARSSLKQH----------------FDLAIGNPPFSDRTVRSDRA-------- 269

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               F     ++ D    F++   ++L+     GG AA V S   L    A +     R 
Sbjct: 270 ----FRSLGLRLHDY---FIVKAIDRLKP----GGIAAFVTSHGTLDKADATA-----RE 313

Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINA 427
            +     +   + LP   F     T++   +     R    R G+    +A
Sbjct: 314 QIAAMADLLGAIRLPEASFRADAGTDVVVDILFFRKR----RNGETVANDA 360


>gi|283826929|ref|YP_003377691.1| putative restriction enzyme [Corynebacterium glutamicum]
 gi|283362269|dbj|BAI66026.1| putative restriction enzyme [Corynebacterium glutamicum]
          Length = 1030

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 30/233 (12%)

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
           G++    S   L+   +   R +       F + A     + DF   I   E        
Sbjct: 230 GHAIMGISLADLAADPARMIRGD------EFENAAIYNVVESDFFDWILADEDGKKFITH 283

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
                 +  +       V+  +YE +I    +   +G  ++ TP  +        +    
Sbjct: 284 IIRRVSV-FNWSETEHDVLKVLYESVI---NAATRKGMGEYYTPDWLAEGIVEKTVTE-- 337

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEP 249
                   + + + DP+CG+G F+  A+  V D                     G ++ P
Sbjct: 338 -------PLKQRVLDPSCGSGTFVFHAIRRVLDAADKAGWDNRTALNHIQGHVFGLDIHP 390

Query: 250 ETHAVCVAGMLIR---RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
            +  +     L+    RL+ D           G ++               +P
Sbjct: 391 VSVVLARVTYLLALGDRLQGDRDGIYVPV-HLGDSMQWYQPADHEEQTIKVDP 442


>gi|237750669|ref|ZP_04581149.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373759|gb|EEO24150.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
          Length = 2282

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 107/364 (29%), Gaps = 66/364 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
               + + TP  +V     L  D               + +P+ G+G FL          
Sbjct: 141 RRAGDAYYTPTPIVESMVKLAKD-------LGLNNNHVILEPSSGSGRFL---------- 183

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +        G EL+P T  +             P   +     Q S  +KD F   
Sbjct: 184 ---GQFHSNANVVGIELDPFTAKLSQT--------IYPYFKIDNAGFQNSKFAKDDF--- 229

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+     +D+      H                         +   ++   
Sbjct: 230 -YDLVIGNPPYSNFTIRDEAFSASAHNY----------------------FMKRGIDKLR 266

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            GG    IV  S    +         +R+ + +N      V LP + F   ++ T + + 
Sbjct: 267 VGGISIQIVTKSFMDSSNDL------VRKEIAKNAKFLGGVRLPNNAFKDASVTTDILVF 320

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
                 E +     ++ + + T+  N     +   D+ +  + ++ V + + G    +++
Sbjct: 321 KKVSAAEAKK----LDNSWIETTELNGIPVSKYFVDNPQNVLGEMKVGKGQFGDIVHVIN 376

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                +    ++  L   +  D   L +     + + L    ++        M    Y  
Sbjct: 377 KEGIDFSNFDLMPYLNKKYDFDTLRL-KDNNTHSLKDLESEVKTTQDITDSQMGAVRYDK 435

Query: 530 GWAE 533
              +
Sbjct: 436 EQDK 439


>gi|225017370|ref|ZP_03706562.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
 gi|224949780|gb|EEG30989.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
          Length = 2434

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 55/212 (25%), Gaps = 51/212 (24%)

Query: 205  MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              R + DP  GTG F +                      G EL+  T  +          
Sbjct: 922  PDRKILDPGMGTGNFYSVLPEQF----------QGSKLFGVELDSITGRIAK-------- 963

Query: 265  ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +  P  D+S    + +      F    F   L N PF      D+   +      +    
Sbjct: 964  QLYPDADISIMGYEAT-----KFEDNSFDVILGNIPFNSVKIHDRRYNDLNPYIHDY--- 1015

Query: 325  GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                                 L+L    GG  A + S   +           +R ++   
Sbjct: 1016 ----------------FFIKSLDLAKP-GGIIAFITSKGIMDRKDES-----LREYIARR 1053

Query: 385  DLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                  + LP   F     T++   +  L  R
Sbjct: 1054 AEFIGAIRLPNTAFKPLAGTDVTADVVFLKKR 1085


>gi|219563243|ref|YP_002455835.1| DNA methylase [Lactobacillus phage Lv-1]
 gi|215537010|gb|ACJ68947.1| DNA methylase [Lactobacillus phage Lv-1]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 21/166 (12%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA- 174
           +   F + + ++                +     +       + +   + F    +E   
Sbjct: 15  QHIQFENYLRKIVFNQEQRN--------DFFKQLLKLDAQCVVQDTFKQYFEEYAAERKA 66

Query: 175 -EDFMTPRDVVHLATALLLDPDDALFKES------PGMIRTLYDPTCGTGGFLTDAMNHV 227
            +   TP +V  L + ++    DA FK             T  D T GTG  L       
Sbjct: 67  NQQDYTPDEVSKLLSIIVNTKYDADFKNGIEKRYFHKKGYTAADITAGTGSLLIQ--KWW 124

Query: 228 ADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           AD  +      +P        EL        +  + +R + +    
Sbjct: 125 ADMTAELPWTYVPHRYFYFASELADNVIPYLLCNLALRGMNAIVVH 170


>gi|10954867|ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacterium tumefaciens]
 gi|6498220|dbj|BAA87672.1| tiorf47 [Agrobacterium tumefaciens]
          Length = 1693

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 69/221 (31%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F       + D         +    G EL+P T   C+  +L   
Sbjct: 185 WRGGRVLEPGIGTGLFPALMPEALRD---------LSHVTGVELDPVTA--CIVRLL--- 230

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G     +L     F   + NPPF  +  +     ++ +++  L  
Sbjct: 231 -------QPRARILTGDFARTELPAS--FDLAIGNPPFSDRTVRS----DRAYRSLGLRL 277

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + +             + L+     G  AA V SS  +    + +     R+ +  
Sbjct: 278 HDYFVARS-----------IDLLKP----GAFAAFVTSSGTMDKADSAA-----RQHIAT 317

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
              + A + LP   F     T++   +     RK  E  G 
Sbjct: 318 TADLIAAIRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGD 358


>gi|159897073|ref|YP_001543320.1| hypothetical protein Haur_0544 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890112|gb|ABX03192.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1093

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 16/116 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++  +YE ++      +     ++ TP  +V          D   ++ S  + + + DP
Sbjct: 343 DIVKYVYEQIVP---EPLRHSLGEYFTPEWLVE------FTLDRVGYQGSQILDQKILDP 393

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGMLI 261
            CG+G FL  A+                + H       G +L P          LI
Sbjct: 394 CCGSGNFLIHAIERYKQAAHAQGWDDSAILHGITNHIFGFDLNPLAMLTARVNYLI 449


>gi|225032082|gb|ACN79574.1| NmeAIII [synthetic construct]
          Length = 937

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 94/326 (28%), Gaps = 69/326 (21%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           G ++  +    I     L   + +    R+ + + +L       D         + F NT
Sbjct: 183 GIYEEHELRLFITRLLFLFFADDSAVFRRNYLFQDFLE-NCKEADTLGDKLNQLFEFLNT 241

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            +   S   S   +         F +  +     FDF++      K       C NF   
Sbjct: 242 PDQKRSKTQSEKFKGFEYVNGGLFKERLRT----FDFTA------KQHRALIDCGNFDWR 291

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-------DD 196
            + P+     +   +++ ++     E  E    +    ++  +   L L+          
Sbjct: 292 NISPE-----IFGTLFQSVMD--AQERREAGAHYTEAANIDKVINGLFLENLRAEFEAVK 344

Query: 197 ALFKESPGMIRTLY---------DPTCGTGGFLTDAMNHVADCGSHHKIP---------- 237
           AL ++    +   Y         DP CG G FL  A + +                    
Sbjct: 345 ALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKADGLF 404

Query: 238 -------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ------------- 277
                   +   HG E++     +    M ++  + + R  +  + +             
Sbjct: 405 DSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAE 464

Query: 278 --QGSTLSKDLFTGKRFHYCLSNPPF 301
               ++L       +   Y   NPPF
Sbjct: 465 IIHANSLRTPW---QAADYIFGNPPF 487


>gi|293370317|ref|ZP_06616874.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
 gi|292634612|gb|EFF53144.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
          Length = 1000

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 38/144 (26%)

Query: 164 RRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             +     E     F TP +V      +L          SP     + D  CG G F   
Sbjct: 59  HEYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF-- 106

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             NH+ +  +          +G +++ +  AV                    +I++    
Sbjct: 107 --NHLPNLHN---------AYGFDIDGKAVAVAR------------YLYPEAHIEKCD-- 141

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWE 306
            +  +  +RF   + NPPF  K++
Sbjct: 142 IRQYYPEQRFDVVIGNPPFNLKFD 165


>gi|315576693|gb|EFU88884.1| N-6 DNA Methylase [Enterococcus faecalis TX0630]
          Length = 335

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKSSNL 334


>gi|169824650|ref|YP_001692261.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
 gi|167831455|dbj|BAG08371.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
          Length = 2547

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 72/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          GS    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GSMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP  +F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|284992137|ref|YP_003410691.1| hypothetical protein Gobs_3742 [Geodermatophilus obscurus DSM
           43160]
 gi|284065382|gb|ADB76320.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 1575

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + R      + +  + TP  +           LLD D         +  T+ +P  G+G
Sbjct: 522 FVFRLAGRERQQSASYYTPEVLTRFVVSQALEELLDQDGERTSAEQVLQLTVCEPALGSG 581

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
            F  +A+  +A+     +   +    GQ +EP+ +
Sbjct: 582 AFAIEAVRQLAEQYLRRRQEEL----GQRIEPDEY 612


>gi|148998809|ref|ZP_01826246.1| hypothetical protein CGSSp11BS70_04920 [Streptococcus pneumoniae
           SP11-BS70]
 gi|168487017|ref|ZP_02711525.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC1087-00]
 gi|168576996|ref|ZP_02722830.1| adenine-specific DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|194397889|ref|YP_002038626.1| hypothetical protein SPG_1959 [Streptococcus pneumoniae G54]
 gi|307068655|ref|YP_003877621.1| adenine-specific DNa methylase [Streptococcus pneumoniae AP200]
 gi|147755370|gb|EDK62420.1| hypothetical protein CGSSp11BS70_04920 [Streptococcus pneumoniae
           SP11-BS70]
 gi|183570077|gb|EDT90605.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183577387|gb|EDT97915.1| adenine-specific DNA methylase [Streptococcus pneumoniae MLV-016]
 gi|194357556|gb|ACF56004.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|306410192|gb|ADM85619.1| Adenine-specific DNA methylase [Streptococcus pneumoniae AP200]
          Length = 317

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 83/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +     +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLTKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYTHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSN----LLKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|108563868|ref|YP_628184.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori HPAG1]
 gi|107837641|gb|ABF85510.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori HPAG1]
          Length = 142

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 393 LPTDLFFRT-NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +PTDLF     + T ++I    +  +    V+ I+  +        G         +  +
Sbjct: 1   MPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEE 60

Query: 452 ILDIYVSRENGKFSR 466
           I+ IY +  N K S+
Sbjct: 61  IIKIYKAGLNAKVSK 75


>gi|322378261|ref|ZP_08052744.1| adenine-specific methyltransferase [Streptococcus sp. M334]
 gi|321280814|gb|EFX57831.1| adenine-specific methyltransferase [Streptococcus sp. M334]
          Length = 317

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 85/255 (33%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE      T+ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLFVFIV----EELFKEEE---ITILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLAKKVDYL---------GMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKGWLKEEASLTAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
              N +  ++IL  +
Sbjct: 266 ASANQSKTIFILQKK 280


>gi|207092523|ref|ZP_03240310.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 518

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 79/247 (31%), Gaps = 41/247 (16%)

Query: 81  YNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
           +N S  S+     TN        + +    +SF D  +        +    +  K    +
Sbjct: 15  FNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNH 74

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +       +E+  ++     + + YE       +        + TP  +V     L   P
Sbjct: 75  QEL-ILKYLEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTFP 127

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            D    ++        DP  G+G F+  A+              +   +G + +    A+
Sbjct: 128 KDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVAL 173

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDA 311
                         R     ++   +   KD    K   +F    +NPP+GKK+ +++  
Sbjct: 174 TK-----------KRIKERYHLDCPNIAQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKE 222

Query: 312 VEKEHKN 318
             K+  N
Sbjct: 223 TFKQKFN 229


>gi|325981286|ref|YP_004293688.1| DNA methyltransferase [Nitrosomonas sp. AL212]
 gi|325530805|gb|ADZ25526.1| DNA methyltransferase [Nitrosomonas sp. AL212]
          Length = 924

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 122/389 (31%), Gaps = 84/389 (21%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L    +   +  +++++++    +        + T  +++ L   L LD   A F +   
Sbjct: 280 LDWSGISPAIFGSLFQNIMDETPNARRNLGAHYTTEENILKLIRPLFLDELHAEFAKIKH 339

Query: 205 MIRTLY------------DPTCGTGGFLTDAMNHVADCG-----------------SHHK 235
             + L             DP CG G FL  A   +                     +   
Sbjct: 340 NTKRLQIFHNKLASLKFLDPACGCGNFLVIAYRELRRLELEVLRALHDSGQQTLDITSII 399

Query: 236 IPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDL-----------SKNIQQGSTL 282
              +   HG E+E     +    + +   ++ +    +            S +I  G+ L
Sbjct: 400 QVDVDQFHGIEIEEFPAQIAQVALWLTDHQMNALVSEEFGQYFIRLPLNKSAHIVHGNAL 459

Query: 283 SKDLFT---GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFG----PGLPKISDG 334
             +  T    +  +  + NPPF GK+++ D+   +K++  G L   G             
Sbjct: 460 RLNWNTVIAAEECNVVMGNPPFIGKQYQTDEQIADKQNIFGALKGIGVVDYVACWYRKAT 519

Query: 335 SMLFL---MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE---NDLIE 388
             +     +H+A         G +  ++     L  G          +W+ E      + 
Sbjct: 520 DYITTNPAIHVAFVSTNSITQGEQVGVLWPD-LLRRGVHIHFAHRTFQWMSEAKGKAAVH 578

Query: 389 AIV-------ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK- 440
            ++       AL   +F   NI              R     L++A +++   R      
Sbjct: 579 CVIIGFGLQDALHKTIFEYENIQG-----EPHAVSARNINPYLVDAPNVFLEKRRTPICA 633

Query: 441 --------------RRIINDDQRRQILDI 455
                           +++DD+R ++L+I
Sbjct: 634 VPEIAFGNMPNGSAHLLLSDDERNKLLEI 662


>gi|237717755|ref|ZP_04548236.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229452984|gb|EEO58775.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 1000

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 112/402 (27%), Gaps = 84/402 (20%)

Query: 164 RRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             +     E     F TP +V      +L          SP     + D  CG G F   
Sbjct: 59  HEYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF-- 106

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             NH+ +  +          +G +++ +  +V                 L  +       
Sbjct: 107 --NHLPNLHN---------AYGFDIDGKAVSVAR--------------YLYPDAHIEKCD 141

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +  +  +RF   + NPPF  K++                              L   + 
Sbjct: 142 LRQYYPEQRFDIVIGNPPFNLKFDY----------------------------KLSQEYY 173

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +K     N  G   I++  S +   ++G  E      +  N        L    F  T 
Sbjct: 174 MDKAYDVLNPAGILMIIVPGSFM---QSGFWEKTRIAGINSNFSFVGQTKLAPSAFAATG 230

Query: 403 I---ATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +    T + +   +            + I   +L   I      +  +  D  R+     
Sbjct: 231 VHDFNTKIMVFLRKSVHIGMRAYSAEEFITVEELKKRIGGARAMKHRLRFDLMRE----- 285

Query: 457 VSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +R + +   + +YR   Y   +KV   L       +  + +          +    + W
Sbjct: 286 TNRIDKEELELFEYRLAKYMYELKVHAKLNRYIGKTEALVTKFRNQKPPGNATREQVNQW 345

Query: 516 LDIL---KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                  K ++  I  Y  +++ V     +    +   K  +
Sbjct: 346 EKNKLTPKKVLAVIRRYITSQNTVPRKEVALVKTSYGFKLKQ 387


>gi|157953403|ref|YP_001498294.1| hypothetical protein AR158_C212L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068051|gb|ABU43758.1| hypothetical protein AR158_C212L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 382

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 79/263 (30%), Gaps = 66/263 (25%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
              ++   +       F TP+D+      ++ +  D +    P   + + +PTCGTG F+
Sbjct: 10  EFQKQLSKQERSTGGVFFTPKDIRD----IIFEELDRISDFEP---KNILEPTCGTGEFI 62

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            D      +              G E++P +  +          +      +  +    +
Sbjct: 63  DDCRRVYENAH----------ILGVEIDPRSAELAR--------DDSKNEIIVHDFITWN 104

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           T        ++F   + NPPF  +                  R  P + K      + ++
Sbjct: 105 TT-------EKFDLIIGNPPFFTRPSG--------------FRHDPNVVKCRSNICIEVV 143

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-------LENDLIEAIVAL 393
           H    +       G  A+VL  S L +         I   +       ++ +        
Sbjct: 144 H--KCMTGHLAENGILAMVLPMSLLNSKFYTPTVDRITTTMDVMFVREIKKNN------- 194

Query: 394 PTDLFFRTNIATYLWILSNRKTE 416
               F  TN+   ++I+      
Sbjct: 195 ----FMGTNVRVMVFIIRKCPPR 213


>gi|134287932|ref|YP_001110096.1| helicase domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134132582|gb|ABO60208.1| helicase domain protein [Burkholderia vietnamiensis G4]
          Length = 1726

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 80/251 (31%), Gaps = 45/251 (17%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           + + TP  +  LA ALL    +           T  DPT G G  ++          +  
Sbjct: 265 QQYSTPIPMSTLAQALLTCGSE-------LQGATYLDPTIGNGSLVSL-------IAAQR 310

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GK 290
                    G E++P                 +  +D +  +  G     D        +
Sbjct: 311 ASGLTATVCGVEIDPA--------------RVEAAQDFADQVVLGDATEIDFRRQFACSE 356

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPFG   +++   + K               +      L    L   L    
Sbjct: 357 GFDFVIANPPFGSMDQRETVELPKNS-----------AVRSMSVQRLDHFLLLKSLHARK 405

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
           + G    I  + + +  G        +  +L ++  I+ +V +  +L+          L+
Sbjct: 406 DQGRAVFITGADNVMKAGEIIGASKHLLAYLYDHYEIDGVVDVSGELYKKQGAGYPLRLY 465

Query: 409 ILSNRKTEERR 419
           ++ +RK E  +
Sbjct: 466 VIGDRKAEPEQ 476


>gi|19746252|ref|NP_607388.1| hypothetical protein spyM18_1281 [Streptococcus pyogenes MGAS8232]
 gi|19748438|gb|AAL97887.1| conserved hypothetical phage protein [Streptococcus pyogenes
           MGAS8232]
          Length = 210

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K  + I    D+  D     +       Y+  ++ F  E +  +
Sbjct: 5   DEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRK 64

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
             +   TP  V  L T L+                T Y+   GTGG L  A        +
Sbjct: 65  NKKQDFTPLSVSKLLTGLV-------------SGHTYYESAVGTGGILIQAWQRHRISSN 111

Query: 233 HHKIPPILVPHG-QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P    +  +EL        +  M IR +        S   Q
Sbjct: 112 PFTYKPSDYWYQVEELSDRALPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|228903157|ref|ZP_04067291.1| hypothetical protein bthur0014_43220 [Bacillus thuringiensis IBL
           4222]
 gi|228967736|ref|ZP_04128753.1| hypothetical protein bthur0004_45260 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791958|gb|EEM39543.1| hypothetical protein bthur0004_45260 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856439|gb|EEN00965.1| hypothetical protein bthur0014_43220 [Bacillus thuringiensis IBL
           4222]
          Length = 324

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 59  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 114

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 115 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 164

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 165 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 211

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 212 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 254

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 255 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 285


>gi|229048345|ref|ZP_04193913.1| hypothetical protein bcere0027_43130 [Bacillus cereus AH676]
 gi|228723070|gb|EEL74447.1| hypothetical protein bcere0027_43130 [Bacillus cereus AH676]
          Length = 328

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|329768016|ref|ZP_08259527.1| hypothetical protein HMPREF0428_01224 [Gemella haemolysans M341]
 gi|328838501|gb|EGF88109.1| hypothetical protein HMPREF0428_01224 [Gemella haemolysans M341]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 57/321 (17%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I    +  K     FD       LE     + I  NFS  +          +   Y+ L+
Sbjct: 11  IDKQVEENKGGGLYFDSLVNYLTLENDEDYFDIVDNFSKED----------IKKAYQFLL 60

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   +        +TP +V+ +  + +L+      K       ++ D   G+G FL   
Sbjct: 61  LK-ALKELNNPSYDITP-EVITMYASHILECLYNNEKI------SVADFASGSGNFLI-- 110

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                +  +  K    L     +         +  +L   +E   +  L           
Sbjct: 111 -----NLAALSKGDYELTSVDVDNNYARLQQNIFNLLETNVEIINQDALKPLNI------ 159

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 K+    +S+ PFG   ++D     K                 S  ++LF+   A
Sbjct: 160 ------KKQDVIISDVPFGYYADEDNSLNYKLCSAEGY----------SLNALLFIEQAA 203

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L    N  G   +V+    L        E   +++L E+  + A++ LP ++F   + 
Sbjct: 204 NYL----NDSGVGVLVVPKKVL------ELEDNFKKFLEEDINLNAVITLPDEMFKNASQ 253

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +++ +   +   +V L
Sbjct: 254 QKAIILITKKGQTKLPNQVFL 274


>gi|306819272|ref|ZP_07452982.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304647938|gb|EFM45253.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 621

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 18/201 (8%)

Query: 140 FSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            SG + +P + +    ++  YE L+    S     A  F TP D                
Sbjct: 141 VSGDDTNPLEDLSIGEIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMA---------- 190

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            +       T  DP CG G         VA       +   LV    +      AV + G
Sbjct: 191 VQSRDFPAGTWLDPCCGVGN--LAWHLVVAQSNPARFVRENLVLIDVDETALRSAVALLG 248

Query: 259 M-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              +   + +    L         LSK       F   + NPP+ +   K+   +E    
Sbjct: 249 ADFLSGGDHEGLAQLWAKASNRDFLSKSGLAPHEF--VIVNPPYAR--AKESPGLECAAS 304

Query: 318 NGELGRFGPGLPKISDGSMLF 338
                 F   + K S G +  
Sbjct: 305 REYFAYFLEKIAKTSRGFIAV 325


>gi|261885495|ref|ZP_06009534.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 727

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     K S+    F +  AN+L        + AI+L SS L          + R  +L 
Sbjct: 2   FNYINLKSSNAIECFFIERANRLL---KSNSKVAIILPSSIL---NKDGVYEKTREIILR 55

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           N  I +I  L ++ F  T   T +  LS ++T
Sbjct: 56  NFDIISITELGSNTFGATGTNTVILFLSKKQT 87


>gi|229192842|ref|ZP_04319800.1| hypothetical protein bcere0002_44930 [Bacillus cereus ATCC 10876]
 gi|228590681|gb|EEK48542.1| hypothetical protein bcere0002_44930 [Bacillus cereus ATCC 10876]
          Length = 330

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 291


>gi|222109151|ref|YP_002551416.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738425|gb|ACM39290.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1701

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 65/224 (29%), Gaps = 56/224 (25%)

Query: 204 GMIRTLYDPTCGTG---GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
            +   + +P  GTG     + +A  +                 G EL+P T  +      
Sbjct: 187 WLGGRVLEPGIGTGLFPALMPEAFRY------------KSYVTGVELDPVTARIVRL--- 231

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                          I  G     DL  G  +   + NPPF  +      AV  +     
Sbjct: 232 ---------LQPKARIVNGDFSRTDL--GVIYDLAIGNPPFSDR------AVRSDRAYRS 274

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           LG             +    +   +       G  AA V SS  +    + +     R  
Sbjct: 275 LG-------------LRLHDYFIARSIDLLKPGALAAFVTSSGTMDKADSTA-----RGH 316

Query: 381 LLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           + ++  + A + LP   F     T++   L     RK  E  G 
Sbjct: 317 IAKSADLIAAIRLPEGSFRRDAGTDVVVDLLFFRKRKMGEVEGD 360


>gi|206969487|ref|ZP_03230441.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|218235174|ref|YP_002369433.1| hypothetical protein BCB4264_A4747 [Bacillus cereus B4264]
 gi|228923387|ref|ZP_04086675.1| hypothetical protein bthur0011_43660 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954907|ref|ZP_04116926.1| hypothetical protein bthur0006_42740 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960906|ref|ZP_04122539.1| hypothetical protein bthur0005_43610 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229072141|ref|ZP_04205350.1| hypothetical protein bcere0025_43070 [Bacillus cereus F65185]
 gi|229112104|ref|ZP_04241647.1| hypothetical protein bcere0018_43470 [Bacillus cereus Rock1-15]
 gi|229147199|ref|ZP_04275557.1| hypothetical protein bcere0012_43350 [Bacillus cereus BDRD-ST24]
 gi|229152833|ref|ZP_04281016.1| hypothetical protein bcere0011_43650 [Bacillus cereus m1550]
 gi|229180957|ref|ZP_04308292.1| hypothetical protein bcere0005_43010 [Bacillus cereus 172560W]
 gi|296505107|ref|YP_003666807.1| adenine-specific methyltransferase [Bacillus thuringiensis BMB171]
 gi|206735175|gb|EDZ52343.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|218163131|gb|ACK63123.1| conserved hypothetical protein [Bacillus cereus B4264]
 gi|228602514|gb|EEK60000.1| hypothetical protein bcere0005_43010 [Bacillus cereus 172560W]
 gi|228630653|gb|EEK87299.1| hypothetical protein bcere0011_43650 [Bacillus cereus m1550]
 gi|228636309|gb|EEK92781.1| hypothetical protein bcere0012_43350 [Bacillus cereus BDRD-ST24]
 gi|228671427|gb|EEL26728.1| hypothetical protein bcere0018_43470 [Bacillus cereus Rock1-15]
 gi|228711075|gb|EEL63041.1| hypothetical protein bcere0025_43070 [Bacillus cereus F65185]
 gi|228798802|gb|EEM45782.1| hypothetical protein bthur0005_43610 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804773|gb|EEM51373.1| hypothetical protein bthur0006_42740 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836341|gb|EEM81694.1| hypothetical protein bthur0011_43660 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|296326159|gb|ADH09087.1| adenine-specific methyltransferase [Bacillus thuringiensis BMB171]
          Length = 328

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|145536580|ref|XP_001454012.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421756|emb|CAK86615.1| unnamed protein product [Paramecium tetraurelia]
          Length = 640

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 29/211 (13%)

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           + LI A + +   ++E ++   + + +  QIL++Y S E      ++  +      +   
Sbjct: 204 IHLIQAHNTYKKTKSEQRQ--YLTNYEIFQILELYNSNEEDLKELIV--KLIDRNSLTSE 259

Query: 482 RPLRM---------SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              ++           ILD+  +      +   +L P  +  + D       + Y Y   
Sbjct: 260 EYYKIYHQLACRQSHTILDEPHIQPCHQSVKDYQLQPQPEKNYFDYFDVNKSENYFYKKR 319

Query: 533 ESFVKESIKSNEAKTLKV--------KASKSFIVAFINAFGRKDPRADPVTDVNGE---- 580
            S +++  K+ E +T K+        K + +F    +    +K        D   E    
Sbjct: 320 MSELEDQNKALEQETQKLSIALETSMKNTNNFKDTLLETITQKLDNKLIEKDKEIENLRQ 379

Query: 581 ----WIPDTNLTEYENVPYLESIQDYFVREV 607
                    N  +   +   +SI+D   RE+
Sbjct: 380 ELLTLKSQINQKDRTIIELEDSIKDINDREI 410


>gi|30022713|ref|NP_834344.1| adenine-specific methyltransferase [Bacillus cereus ATCC 14579]
 gi|29898272|gb|AAP11545.1| Adenine-specific methyltransferase [Bacillus cereus ATCC 14579]
          Length = 328

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|262045267|ref|ZP_06018292.1| modification methylase Eco57IB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037323|gb|EEW38569.1| modification methylase Eco57IB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 542

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 32/250 (12%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +      +    + TP+++    T  +L+             +++ +P+CG G F     
Sbjct: 4   KADQTAQKLRGGYYTPQNIADFTTKWVLNNKP----------KSILEPSCGDGVFFQSLY 53

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           N        +K        G EL           M + +       ++++          
Sbjct: 54  N--------NKFDKNTKVQGYELFDIE---AKKSMELCKSLGFSDVEITEGDFLEWAKVA 102

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + NPPF +    +KD   +E+             K ++  + F++   +
Sbjct: 103 IQKKNTSFDAIIGNPPFIRYQFLEKDF--QENTEAIFKLLDLKFTKHTNAWVPFILSGVS 160

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L    N GGR  +V+ S  +    A S    +R +L E+     I+  P +++F   + 
Sbjct: 161 LL----NPGGRLGMVIPSEIINVMHAQS----LRTFLGEHCSKIVIID-PKEIWFSETLQ 211

Query: 405 TYLWILSNRK 414
             + +L  +K
Sbjct: 212 GAVILLVEKK 221


>gi|228941819|ref|ZP_04104366.1| hypothetical protein bthur0008_44550 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974744|ref|ZP_04135310.1| hypothetical protein bthur0003_44970 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981339|ref|ZP_04141639.1| hypothetical protein bthur0002_45000 [Bacillus thuringiensis Bt407]
 gi|228778539|gb|EEM26806.1| hypothetical protein bthur0002_45000 [Bacillus thuringiensis Bt407]
 gi|228785147|gb|EEM33160.1| hypothetical protein bthur0003_44970 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818031|gb|EEM64109.1| hypothetical protein bthur0008_44550 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 324

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 59  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 114

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 115 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 164

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 165 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIGASEYKLKADEGM 211

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 212 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 254

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 255 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 285


>gi|159898482|ref|YP_001544729.1| hypothetical protein Haur_1958 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891521|gb|ABX04601.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1333

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 33/162 (20%)

Query: 153 RVMSNIYEHLIRR-----------FGSEVSEGAEDFMT-P---RDVVHLATA-LLLDPDD 196
             + ++YE L+                   +    + T P   ++++  A   ++ +   
Sbjct: 433 EELGSVYESLLDYRPVVAGTSFDLVAGTERKTTGSYYTRPELVQELIKSALEPIIAERLR 492

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------DCGSHHKIPPILV--------- 241
               E   +  T+ DP CG+G FL  A   +         G     P             
Sbjct: 493 DKNPEQALLSITVCDPACGSGHFLLAAARRIGRELARVRSGEDQPTPDQFRHAVRDVITH 552

Query: 242 -PHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGST 281
             +G +  P    +C   + I       P   +  +I+ G++
Sbjct: 553 CIYGVDFNPLAVDLCKLALWIEGHCAGMPLSFIDYHIRWGNS 594


>gi|257440759|ref|ZP_05616514.1| putative Type II restriction enzyme, methylase subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257196733|gb|EEU95017.1| putative Type II restriction enzyme, methylase subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 1189

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 31/103 (30%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 127 FIYRLAGREREKSASYYTPEVLTKCLVKYALKELLKDKSADDILHLTICEPAMGSAAFLN 186

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +A+N +A+     K        G E            +  R +
Sbjct: 187 EAINQLAEAYISRKEQETGEIIGYEDRFNQLQKVKMFIADRNV 229


>gi|229129922|ref|ZP_04258888.1| hypothetical protein bcere0015_43620 [Bacillus cereus BDRD-Cer4]
 gi|228653613|gb|EEL09485.1| hypothetical protein bcere0015_43620 [Bacillus cereus BDRD-Cer4]
          Length = 330

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 291


>gi|227519325|ref|ZP_03949374.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227555467|ref|ZP_03985514.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis HH22]
 gi|229545434|ref|ZP_04434159.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|229549678|ref|ZP_04438403.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis ATCC 29200]
 gi|255972375|ref|ZP_05422961.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975478|ref|ZP_05426064.1| adenine-specific DNA methylase [Enterococcus faecalis T2]
 gi|256619458|ref|ZP_05476304.1| adenine-specific DNA methylase [Enterococcus faecalis ATCC 4200]
 gi|256762912|ref|ZP_05503492.1| adenine-specific DNA methylase [Enterococcus faecalis T3]
 gi|256853498|ref|ZP_05558868.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256959297|ref|ZP_05563468.1| adenine-specific DNA methylase [Enterococcus faecalis DS5]
 gi|256961529|ref|ZP_05565700.1| adenine-specific DNA methylase [Enterococcus faecalis Merz96]
 gi|256964745|ref|ZP_05568916.1| adenine-specific DNA methylase [Enterococcus faecalis HIP11704]
 gi|257082198|ref|ZP_05576559.1| adenine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|257087188|ref|ZP_05581549.1| adenine-specific DNA methylase [Enterococcus faecalis D6]
 gi|257416419|ref|ZP_05593413.1| adenine-specific DNA methylase [Enterococcus faecalis AR01/DG]
 gi|257419664|ref|ZP_05596658.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257422229|ref|ZP_05599219.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293382206|ref|ZP_06628148.1| adenine-specific methyltransferase [Enterococcus faecalis R712]
 gi|293388625|ref|ZP_06633121.1| adenine-specific methyltransferase [Enterococcus faecalis S613]
 gi|300861099|ref|ZP_07107186.1| N-6 DNA Methylase [Enterococcus faecalis TUSoD Ef11]
 gi|307272825|ref|ZP_07554072.1| N-6 DNA Methylase [Enterococcus faecalis TX0855]
 gi|307275922|ref|ZP_07557055.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|307277705|ref|ZP_07558791.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|307287872|ref|ZP_07567905.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|307295901|ref|ZP_07575733.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|312900870|ref|ZP_07760164.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|312908302|ref|ZP_07767266.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 512]
 gi|312910624|ref|ZP_07769466.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 516]
 gi|312951276|ref|ZP_07770178.1| N-6 DNA Methylase [Enterococcus faecalis TX0102]
 gi|227073219|gb|EEI11182.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227175407|gb|EEI56379.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis HH22]
 gi|229305158|gb|EEN71154.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis ATCC 29200]
 gi|229309470|gb|EEN75457.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|255963393|gb|EET95869.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968350|gb|EET98972.1| adenine-specific DNA methylase [Enterococcus faecalis T2]
 gi|256598985|gb|EEU18161.1| adenine-specific DNA methylase [Enterococcus faecalis ATCC 4200]
 gi|256684163|gb|EEU23858.1| adenine-specific DNA methylase [Enterococcus faecalis T3]
 gi|256711957|gb|EEU26995.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256949793|gb|EEU66425.1| adenine-specific DNA methylase [Enterococcus faecalis DS5]
 gi|256952025|gb|EEU68657.1| adenine-specific DNA methylase [Enterococcus faecalis Merz96]
 gi|256955241|gb|EEU71873.1| adenine-specific DNA methylase [Enterococcus faecalis HIP11704]
 gi|256990228|gb|EEU77530.1| adenine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|256995218|gb|EEU82520.1| adenine-specific DNA methylase [Enterococcus faecalis D6]
 gi|257158247|gb|EEU88207.1| adenine-specific DNA methylase [Enterococcus faecalis ARO1/DG]
 gi|257161492|gb|EEU91452.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257164053|gb|EEU94013.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291080390|gb|EFE17754.1| adenine-specific methyltransferase [Enterococcus faecalis R712]
 gi|291082000|gb|EFE18963.1| adenine-specific methyltransferase [Enterococcus faecalis S613]
 gi|300850138|gb|EFK77888.1| N-6 DNA Methylase [Enterococcus faecalis TUSoD Ef11]
 gi|306496232|gb|EFM65811.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306501017|gb|EFM70324.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306505584|gb|EFM74768.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|306507252|gb|EFM76389.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|306510439|gb|EFM79462.1| N-6 DNA Methylase [Enterococcus faecalis TX0855]
 gi|310625716|gb|EFQ08999.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 512]
 gi|310630810|gb|EFQ14093.1| N-6 DNA Methylase [Enterococcus faecalis TX0102]
 gi|311289172|gb|EFQ67728.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 516]
 gi|311291969|gb|EFQ70525.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|315025988|gb|EFT37920.1| N-6 DNA Methylase [Enterococcus faecalis TX2137]
 gi|315028909|gb|EFT40841.1| N-6 DNA Methylase [Enterococcus faecalis TX4000]
 gi|315034538|gb|EFT46470.1| N-6 DNA Methylase [Enterococcus faecalis TX0027]
 gi|315147646|gb|EFT91662.1| N-6 DNA Methylase [Enterococcus faecalis TX4244]
 gi|315152628|gb|EFT96644.1| N-6 DNA Methylase [Enterococcus faecalis TX0031]
 gi|315157268|gb|EFU01285.1| N-6 DNA Methylase [Enterococcus faecalis TX0043]
 gi|315159897|gb|EFU03914.1| N-6 DNA Methylase [Enterococcus faecalis TX0312]
 gi|315161380|gb|EFU05397.1| N-6 DNA Methylase [Enterococcus faecalis TX0645]
 gi|315163676|gb|EFU07693.1| N-6 DNA Methylase [Enterococcus faecalis TX1302]
 gi|315167492|gb|EFU11509.1| N-6 DNA Methylase [Enterococcus faecalis TX1341]
 gi|315169392|gb|EFU13409.1| N-6 DNA Methylase [Enterococcus faecalis TX1342]
 gi|315574546|gb|EFU86737.1| N-6 DNA Methylase [Enterococcus faecalis TX0309B]
 gi|315581812|gb|EFU94003.1| N-6 DNA Methylase [Enterococcus faecalis TX0309A]
 gi|323481118|gb|ADX80557.1| N-6 DNA Methylase family protein [Enterococcus faecalis 62]
 gi|327535498|gb|AEA94332.1| adenine-specific methyltransferase [Enterococcus faecalis OG1RF]
          Length = 335

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|196040886|ref|ZP_03108184.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196028340|gb|EDX66949.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 328

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 81/273 (29%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMKGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAQE-------NITMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A      I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHVFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|312964340|ref|ZP_07778639.1| putative helicase [Escherichia coli 2362-75]
 gi|312290970|gb|EFR18845.1| putative helicase [Escherichia coli 2362-75]
          Length = 1868

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 23/140 (16%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 136 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 178

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 179 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 233

Query: 408 -WILSNRKTEERRGKVQLIN 426
             +L  +   E   K+ L++
Sbjct: 234 DVVLMRKHPAEMAEKIPLVD 253


>gi|289423014|ref|ZP_06424834.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289156588|gb|EFD05233.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2659

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 56/436 (12%), Positives = 119/436 (27%), Gaps = 77/436 (17%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D   +   E       + +P+ G G F+          G+          +G EL+
Sbjct: 1051 KIVIDGVYSTLSEMGFKNGNILEPSMGVGNFI----------GNLPDEMSKSKFYGVELD 1100

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +                   ++  Q     +  F+   F   + N PFG+     
Sbjct: 1101 SVSGRIAKL-------------LYPESDVQVKGFEETSFSNNFFDVAIGNVPFGE----- 1142

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                           F     + +  + L   +   K       GG  A + SS  +   
Sbjct: 1143 ---------------FKVNDREYNRNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM--- 1184

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKT--EERRGKVQ 423
                 +  IR+++         + LP D F       + + +  L  R +  E     V 
Sbjct: 1185 --DKKDESIRKYINARAEFLGAIRLPNDTFKGVAGAEVTSDIIFLKKRDSVLERDDDWVH 1242

Query: 424  -------------LINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                          ++  +  L +     G+  + +  +        ++ +EN   S   
Sbjct: 1243 LAEDENGLTYNKYFVDHPEQVLGSMREVSGRFGKTLTCEPI-----AFLGQENNMESLKD 1297

Query: 469  DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 G R  K  +   +  + D+        D+     + +    +       +++   
Sbjct: 1298 RIEIAGERMSKDAKYEEIELLDDEVTSIPATDDVKNFSYTLIDDEVYYRENSLFIKREVS 1357

Query: 529  YGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                E        +   K +    K   S++ I    +                      
Sbjct: 1358 DKSKEKIKDYLELNEALKDVIYKQKEDFSEAEIKESQDKLNVVYDSFSKKHGFVNNLSNT 1417

Query: 585  TNLTEYENVPYLESIQ 600
              L E  N P + SI+
Sbjct: 1418 RALREDSNFPLVSSIE 1433


>gi|258512942|ref|YP_003189199.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256634845|dbj|BAI00820.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256637900|dbj|BAI03868.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-03]
 gi|256640954|dbj|BAI06915.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-07]
 gi|256644009|dbj|BAI09963.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-22]
 gi|256647064|dbj|BAI13011.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-26]
 gi|256650117|dbj|BAI16057.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-32]
 gi|256653108|dbj|BAI19041.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656161|dbj|BAI22087.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-12]
          Length = 902

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 50/228 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L++     +         ++ +P CGTG     A           K+   +   G E +
Sbjct: 152 ELIVHSMWDMALRMGFRGGSVLEPGCGTG-LFIAA--------RPEKLEGKIAFTGIEND 202

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P +  +              +   ++ I+        L  G  +   + NPPF  +    
Sbjct: 203 PISARIAR------------KLYPNQWIRSEDFTRAQLPQG--YDLAIGNPPFSNRTVHG 248

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +D +EK   +                          +       GG A  V S   L   
Sbjct: 249 RDGLEKLGLSLHD-------------------FFIARSIDALRPGGIALFVTSRYTLDKT 289

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
              +     RR + E+  +   V LP         T++   +     R
Sbjct: 290 DPNA-----RRIIGESADLLGAVRLPEGAMRDDAGTDVVVDVLAFRKR 332


>gi|320039431|gb|EFW21365.1| RNA methylase [Coccidioides posadasii str. Silveira]
          Length = 393

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG F   A +  A   +           GQ+ E     +    ML   L
Sbjct: 166 PGKVFYDPFVGTGSFCVAAAHFGA--FTFGSDIDARSFKGQKEEGRPIGLVR-NMLQYGL 222

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           E++     + ++      +  +     F   + +PP+G +
Sbjct: 223 EANYLDAFTSDLTNTPFRNMPI-----FDGIICDPPYGIR 257


>gi|71907843|ref|YP_285430.1| helicase, C-terminal [Dechloromonas aromatica RCB]
 gi|71847464|gb|AAZ46960.1| Helicase, C-terminal [Dechloromonas aromatica RCB]
          Length = 1669

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 37/133 (27%), Gaps = 27/133 (20%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   + N PFGK    D         N    RF                     L+
Sbjct: 257 PDHWFDLVIGNVPFGKYKVADV-------SNRAYSRFSIHNY-----------FFGRALD 298

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---TNIA 404
           L   GG    I  S +      A      +R ++     +   + LP   F     T + 
Sbjct: 299 LVRPGGLVCFITSSHTMDGQYDA------VREYIASQAHLLGAIRLPKGTFAGIASTEVQ 352

Query: 405 TYLWILSNRKTEE 417
           T +  L  R+  E
Sbjct: 353 TDILFLRKRQRAE 365


>gi|299535446|ref|ZP_07048768.1| hypothetical protein BFZC1_05478 [Lysinibacillus fusiformis ZC1]
 gi|298729207|gb|EFI69760.1| hypothetical protein BFZC1_05478 [Lysinibacillus fusiformis ZC1]
          Length = 309

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 38/218 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ D   GTG  L   MN +            +   G E++     +  A        +D
Sbjct: 103 SIMDLAVGTGNLLLTVMNLL---------DGKVEATGVEVDELLIRLAAA-------TAD 146

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +Q     +DL         + + P G  +  ++ A++ E            
Sbjct: 147 LIEQPISLYRQD--ALEDLLVN-PVDAVVCDLPVG-YYPNEEVALDYE------------ 190

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L      S    + +   +    +GG      L+ + LF         ++ +++ ++  I
Sbjct: 191 LCPAEGMSYAHHLFIEQSMNYTKDGGYL--FFLAPAHLFESEQS---KQLHKYIQKHAWI 245

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
           +AI+ LP  +F   ++   + IL  + K  +   +V L
Sbjct: 246 QAIIQLPDSMFANKSLEKSIVILQKQSKELKAPKEVLL 283


>gi|298241945|ref|ZP_06965752.1| Eco57I restriction endonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297554999|gb|EFH88863.1| Eco57I restriction endonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 1610

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 245  QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            Q++  E + V         + S    +L          +  L +   F   + NPP+G  
Sbjct: 1044 QQINDEQYLVLENAERDAIMHSFFHWELEFPEVYIDLQNASLKSSPGFDVVIGNPPYGSA 1103

Query: 305  WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                 D + ++  N +           +  +M        K  +          ++ S  
Sbjct: 1104 ----LDTLTRDFANSDY--------HATKSAMDLFALFLEKASVLGKTQANVGFIVPSGW 1151

Query: 365  LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
            L +         +R +LL       I+ LP D+F    I T + I + + ++ R
Sbjct: 1152 LTS----PHHESLRGYLLSTISFRYIIHLPYDVFPDAYIDTIICIGTKQSSKTR 1201


>gi|92114585|ref|YP_574513.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797675|gb|ABE59814.1| [LSU ribosomal protein L3P]-glutamine N5-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
          Length = 317

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 25/143 (17%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +L+    F   + +  E  + PR  +     L+ D   A F +       + D   G+G 
Sbjct: 102 YLLGEAFFAGHLFDVDERVLIPRSPI---AELIEDGFAAWFDQ--WPPARVLDLCAGSGC 156

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                  ++                  ++ P+  AV  A ++   +    R   S     
Sbjct: 157 IGIATALYLPTAEVDL----------VDISPDALAVAKANIVRHDVGHRVRAVTSDLFA- 205

Query: 279 GSTLSKDLFTGKRFHYCLSNPPF 301
                     G+R+   +SNPP+
Sbjct: 206 -------GVAGQRYDVIVSNPPY 221


>gi|21223693|ref|NP_629472.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|5139576|emb|CAB45593.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 1200

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 66/444 (14%), Positives = 128/444 (28%), Gaps = 83/444 (18%)

Query: 35  ILPFTLLRRLEC-------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
           +L    +R  E         L       RE   A   + ++ +      G+      E  
Sbjct: 69  VLGTVFVRFCEDNRLIPEPYLTGPDGDRRELAEARYDAYVESDDDPTYRGWLEKAFDELG 128

Query: 88  LSTLGS--TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
               G    + R+N    I    D A+ + E   F     R E   L++      +  E 
Sbjct: 129 QGQAGRLLFDKRHNPLYQIPLSHDGARELVE---FWRQ--RDEAGVLVHDFTDPLN--ED 181

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +    R + ++Y+ L         +      TP  V        ++P     +E    
Sbjct: 182 GTEGWDTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMNP---AVREFGYE 234

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCV 256
              + DPTCG+G F+  A   +    +  +    +           HG ++ P   A+  
Sbjct: 235 ELKMIDPTCGSGHFVLGAFRRLVRLWAEGQPGRDVHERVRAALHSIHGVDINPFAVAIAR 294

Query: 257 AGMLIRRLESDPRR--------DLSKNIQQGST--------------------------- 281
             +L+  + +   R        +   ++  G +                           
Sbjct: 295 FRLLVAAIAASGVRTLAEAAKYEWPIHLAVGDSLIKARQLELTLGGDEDGGYDPLASFTY 354

Query: 282 LSKDLFT------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            ++D+          R+H  + NPP+            K+ K  EL R        +   
Sbjct: 355 ATEDVHEHPGILQQGRYHVVVGNPPY---------ITVKDKKLNELYRELYDACGGTYAL 405

Query: 336 MLFLMHLANKLELPPNGGGRA-AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +       +L       GRA  +V   +     +   G   I R+  +   +  ++   
Sbjct: 406 SVPFAQRFFELAKRGGDEGRAYGMVGQITANSFMKREFGTKLIERYFRDRVELTEVIDTS 465

Query: 395 TDLFFRTNIATYLWILSNRKTEER 418
                     T + +    K  +R
Sbjct: 466 GAYIPGHGTPTVILVGKRCKGSQR 489


>gi|330825863|ref|YP_004389166.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329311235|gb|AEB85650.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 1680

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 53/217 (24%), Gaps = 47/217 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  G G FL      +A+                E++  +  +  A      
Sbjct: 203 FTGGRVLEPAAGVGHFLGAMPRSLAER---------SAVTAIEIDRLSGRMLQALYAPHG 253

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            +                  K       F   + N PFG     D              R
Sbjct: 254 ADVRIAP-----------FEKVALPENWFDLVIGNVPFGNYPAADAGP-------KPYAR 295

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F                     L+L   GG    I         G   + +  +R ++  
Sbjct: 296 FRIHNY-----------FFGRALDLVRPGGLVCFIT------STGTMEARDDAVREYVAS 338

Query: 384 NDLIEAIVALPTDLFFR---TNIATYLWILSNRKTEE 417
              +   + LP   F     T++ T +  L  R   E
Sbjct: 339 QAKLLGAIRLPRGAFAGLASTDVQTDILFLGKRHPGE 375


>gi|240147717|ref|ZP_04746318.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257200073|gb|EEU98357.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 171

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 28/132 (21%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F   + N PF                 G+   F P   K +  +     +   K  
Sbjct: 2   SDNFFDVVVGNVPF-----------------GDYKVFDP---KYNKYNFRIHDYFLAKAL 41

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG  A++ +   L           IR++L E   +   V LP   F     T + 
Sbjct: 42  DQVRPGGMVAVITTKGTL-----DKANPAIRKYLAERAELVGAVRLPNTAFKDNAGTEVT 96

Query: 405 TYLWILSNRKTE 416
             +  L  R+ +
Sbjct: 97  ADILFLQKRERK 108


>gi|253563306|ref|ZP_04840763.1| modification methylase AccI [Bacteroides sp. 3_2_5]
 gi|251947082|gb|EES87364.1| modification methylase AccI [Bacteroides sp. 3_2_5]
          Length = 441

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           ML+++        + +      T   D    G  +   ++NPP+G   E ++    K+  
Sbjct: 10  MLLQKYRKSKSIQIRQTDYLKDTTLDDYIVKGGVYDAIIANPPYGAWREIEERKQLKDKF 69

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           NG   +             LFL+H  N L+     GG+ + ++  + L          ++
Sbjct: 70  NGLYAKESYT---------LFLIHSINLLK----EGGKLSFIIPDTWL----NVHMHKQV 112

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIA-TYLWILSNRKT 415
           R+++L N +I  I   P+  F   N     L I+S +K 
Sbjct: 113 RKYILTNTMITEISLFPSSFFPNVNFGYANLMIISLKKN 151


>gi|225075297|ref|ZP_03718496.1| hypothetical protein NEIFLAOT_00300 [Neisseria flavescens
           NRL30031/H210]
 gi|224953472|gb|EEG34681.1| hypothetical protein NEIFLAOT_00300 [Neisseria flavescens
           NRL30031/H210]
          Length = 960

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 89/326 (27%), Gaps = 69/326 (21%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           G ++  +    I     L   + +    R+ + + +L       D         + F NT
Sbjct: 183 GIYEEHELRLFITRLLFLFFADDSAVFQRNYLFQDFLE-SCKEADTLGDKLNQLFEFLNT 241

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            +   S   S   +         F +  +     FDF++   R                 
Sbjct: 242 PDQKRSKTQSEKFKGFEYVNGGLFKERLRT----FDFTAKQHRA-----------LIDCG 286

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-------DD 196
                 +   +   +++ ++     E  E    +    ++  +   L L+          
Sbjct: 287 NFDWRNISPEIFGTLFQSVMD--AQERREAGAHYTEAANIDKVINGLFLENLRAEFEAVK 344

Query: 197 ALFKESPGMIRTLY---------DPTCGTGGFLTDAMNHVADCGSHHKIP---------- 237
           AL ++    +   Y         DP CG G FL  A + +                    
Sbjct: 345 ALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKAGGLF 404

Query: 238 -------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ------------- 277
                   +   HG E++     +    M ++  + + R  +  + +             
Sbjct: 405 DSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAE 464

Query: 278 --QGSTLSKDLFTGKRFHYCLSNPPF 301
               ++L       +   Y   NPPF
Sbjct: 465 IIHANSLRTPW---QAADYIFGNPPF 487


>gi|83956080|ref|ZP_00964562.1| hypothetical protein NAS141_02766 [Sulfitobacter sp. NAS-14.1]
 gi|83839646|gb|EAP78825.1| hypothetical protein NAS141_02766 [Sulfitobacter sp. NAS-14.1]
          Length = 1179

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 98/312 (31%), Gaps = 56/312 (17%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSF 80
           L G F   D    +LP           +     V ++ L  GG  +  ++  V+  G  +
Sbjct: 352 LLGQFDQNDEPD-VLP---------VSDKCIHEVLKQLLMLGGERLSYKTLDVEQIGSVY 401

Query: 81  YNTSEYSLSTLGSTNT-----RNNLESYIASF-------SDNAKAIFEDFDFSSTIARLE 128
                ++++    ++      +  + +YI              K + +  DF +T A+ +
Sbjct: 402 ETVMGFTVTRSKGSSIALRSGKGGIPAYIDLEAVLGKAPDKRTKYLLDTIDFKTTPAQSK 461

Query: 129 KAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                  I +  + ++   D    PD+ ++     +++   ++         TPR +   
Sbjct: 462 LLKPAKTIDELLTALDKKIDERGSPDKRVTTAGTIILQ--PTDERRKTGSHYTPRSLTAP 519

Query: 187 ATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCG----------- 231
                L+P  A   E+P   +     + DP  G+G FL +    + +             
Sbjct: 520 IVKEALEPVLAQLGENPTPDQVLDLKVCDPAMGSGAFLVETCRALGEQLEAAWARHPHLL 579

Query: 232 -SHHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               +  P +           +G +       +    + +        +D   +    + 
Sbjct: 580 PDEARTDPQVFARREVAKRCLYGVDKNHMATDLAKLALWL----VTLAKDEDFSFLDHAL 635

Query: 282 LSKDLFTGKRFH 293
            + D   G  F 
Sbjct: 636 KTGDSLVGLNFD 647


>gi|293376145|ref|ZP_06622391.1| conserved domain protein [Turicibacter sanguinis PC909]
 gi|325845295|ref|ZP_08168598.1| hypothetical protein HMPREF9402_0951 [Turicibacter sp. HGF1]
 gi|292645218|gb|EFF63282.1| conserved domain protein [Turicibacter sanguinis PC909]
 gi|325488656|gb|EGC91062.1| hypothetical protein HMPREF9402_0951 [Turicibacter sp. HGF1]
          Length = 329

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 83/241 (34%), Gaps = 45/241 (18%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
              MTP  +  L  + L+       KE      T+ D T GTG FLT  +N +       
Sbjct: 93  NAVMTPDSIA-LMVSYLISKFIPSAKE-----MTVADLTVGTGNFLTAILNQI------- 139

Query: 235 KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                   +G +++ +   +   ++ M    ++   +  L   + +              
Sbjct: 140 -DVEPQAIYGVDVDKDLLQIAYTLSDMQEHAVQFYQQSSLKPMLVEP------------L 186

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + + P G+  +  +  V+ E                   + L  + + N L+     
Sbjct: 187 DLIVGDLPTGEVVDSSE-LVDLELSLV-----------SKQVTYLPYLLIENHLKYLKP- 233

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG A  V+ +       +  G +E  + L     I+A++ LP+ +F    +   L+I+  
Sbjct: 234 GGYAFYVIPNDLF----SQKGSTEFHQMLTSQANIQALLQLPSSMFKSHELGKSLFIIQK 289

Query: 413 R 413
            
Sbjct: 290 N 290


>gi|254976974|ref|ZP_05273446.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255651892|ref|ZP_05398794.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260687151|ref|YP_003218285.1| putative helicase [Clostridium difficile R20291]
 gi|260213168|emb|CBE04620.1| putative helicase [Clostridium difficile R20291]
          Length = 2909

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+          G+    
Sbjct: 1179 FYTPKTVI--------DGIYKTLSDMGFKQGNILEPSMGIGNFI----------GNIPDE 1220

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q   L +  F+   F   +
Sbjct: 1221 MNKSKFYGIELDSVSGRIGKL-------------LYPESEVQIKGLEETSFSNNFFDAVI 1267

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++                     +  + L   +   K       GG  
Sbjct: 1268 GNIPFGEYKVNDRE--------------------YNKNNFLIHDYFFAKSIDKVRNGGII 1307

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1308 AFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGIAGTEVTSDIIFLKKR 1362

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1363 DSIRERDE 1370


>gi|331649967|ref|ZP_08351043.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331041224|gb|EGI13378.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 2255

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 23/140 (16%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 170 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 213 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267

Query: 408 -WILSNRKTEERRGKVQLIN 426
             +L  +   E   K+ L++
Sbjct: 268 DVVLMRKHPAEMAEKIPLVD 287


>gi|313667255|ref|YP_004049656.1| protein of unknown function DUF450 [Oceanithermus profundus DSM
           14977]
 gi|313153886|gb|ADR37736.1| protein of unknown function DUF450 [Oceanithermus profundus DSM
           14977]
          Length = 1102

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPTC 214
             YE  +  +  ++ +    + TP +VV     L  D    + K +        + DP  
Sbjct: 305 YFYEDFLAAYDPKMRKDYGVYYTPVEVVGAMVRLTHDALRRMGKPAGLADEGVLVLDPAA 364

Query: 215 GTGGFLTDAMN 225
           GTG F     +
Sbjct: 365 GTGTFPLATFD 375


>gi|153871961|ref|ZP_02000989.1| helicase [Beggiatoa sp. PS]
 gi|152071572|gb|EDN69010.1| helicase [Beggiatoa sp. PS]
          Length = 344

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K+   Y          +       + +  IYE+  + +  + ++      TP ++V    
Sbjct: 228 KSIDSYYAVIRREAANIANHHEKQQFLKVIYENFYKTYNPKAADRLGIVYTPNEIVRFMI 287

Query: 189 A----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
                LL    + L  +       + DP  GTG F+T+ + ++   GS   I    +
Sbjct: 288 ESTDYLLNKHFNRLLADENVE---ILDPATGTGTFITELIEYLPKIGSVQSIWKKYI 341


>gi|257090264|ref|ZP_05584625.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999076|gb|EEU85596.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 335

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKSSNL 334


>gi|213692204|ref|YP_002322790.1| putative DNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523665|gb|ACJ52412.1| putative DNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458332|dbj|BAJ68953.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 932

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 74/257 (28%), Gaps = 60/257 (23%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           F   D      R++   L  ++      I        +   +  ++ E  +     E  +
Sbjct: 264 FPYVDGGLFADRIDVPPLTGELRDALLDISEGFDWSGISPVIFGSLMEETLSH--DERRK 321

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGM-------------------IRTLYDPT 213
           G   + + R++  L   L LD   +  +++                           DP 
Sbjct: 322 GGMHYTSVRNIHRLIDPLFLDGLKSELEQAEAKPVAGGARTNALNKLHDKIAGLRFLDPA 381

Query: 214 CGTGGFLTDAMNHVA------------------DCGSHHKIPP--ILVPHGQELEPETHA 253
           CG+G FLT+    +                   D G         I   HG E+     A
Sbjct: 382 CGSGNFLTETYLELRRIENRILADLDKDGQLALDLGDDLNPVRVSISHFHGIEINGFACA 441

Query: 254 VCVAGMLIR-------------RLESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLS 297
           V    + I               L   P  D + +IQQG+ L  D      G    Y + 
Sbjct: 442 VARTALWIAEQQALDDTESTISGLPRLPFTD-TAHIQQGNALRLDWNELLPGDHCDYVMG 500

Query: 298 NPPFGKKWEKDKDAVEK 314
           NPPF     K     + 
Sbjct: 501 NPPFIGHVTKTAGQTDD 517


>gi|209883316|ref|YP_002287173.1| restriction methylase [Oligotropha carboxidovorans OM5]
 gi|209871512|gb|ACI91308.1| restriction methylase [Oligotropha carboxidovorans OM5]
          Length = 599

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 18/164 (10%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P       ++++Y  L+             F TP  +      L  +             
Sbjct: 103 PILEGGHFLTSLYTTLLP---GRERSALGAFYTPPALTQRLLDLADEGGVD------WST 153

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----PHGQELEPETHAV--CVAGM 259
             + DP  G G FL +    +       +   +L        G EL+P   ++      +
Sbjct: 154 ARVLDPASGGGAFLLEVAARMRLALEGSEPAFVLAQLGTRLSGLELDPHAASLSQAALEI 213

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
            +  L     R     ++   TL +      ++   + NPP+G+
Sbjct: 214 FLSDLSMASGRTTPVFVKVCDTLEE--TPVAQYDLVIGNPPYGR 255


>gi|124514555|gb|EAY56068.1| putative modification methylase [Leptospirillum rubarum]
          Length = 575

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 17/149 (11%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F +   E      T R+VV     L+           P     L +P+ G G FL  
Sbjct: 25  VNQFANAGIEARGAIFTRREVVEFILDLV-----GYTANRPLHKIRLLEPSFGGGDFLLS 79

Query: 223 AMNHVADCGSHHKIPPILV-----PHGQELEPETHAVCVAG----MLIRRL-ESDPRRDL 272
           A+  +         P  +          EL   T A   A     +    +  +D  R +
Sbjct: 80  AIERLLKAWMEAGRPEPVKSLSDCIRAVELHHITFATTRAAVAKTLERAGIPSNDAERLV 139

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           ++ +  G  L   L     F   + NPP+
Sbjct: 140 TEWLIYGDFLLVPL--EGLFDVVVGNPPY 166


>gi|332673306|gb|AEE70123.1| adenine specific DNA methyltransferase [Helicobacter pylori 83]
          Length = 545

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 36/254 (14%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLVNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       +++  ++     + + YE       +        + TP  +V   
Sbjct: 68  LKGAHNHQEL-ILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++        DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKK 304
           +    A+              R     ++   + + KD    K   +F    +NPP+GKK
Sbjct: 167 DAFAIALTK-----------KRIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKK 215

Query: 305 WEKDKDAVEKEHKN 318
           + +++    K+H N
Sbjct: 216 FNQNQKENFKQHFN 229


>gi|307317134|ref|ZP_07596575.1| hypothetical protein SinmeDRAFT_1033 [Sinorhizobium meliloti AK83]
 gi|306897222|gb|EFN27967.1| hypothetical protein SinmeDRAFT_1033 [Sinorhizobium meliloti AK83]
          Length = 645

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 68/240 (28%), Gaps = 82/240 (34%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP ++V    A       A  ++ P     + +P+ G+G  +      +       
Sbjct: 478 GYFPTPAEIVSDMVA------AAGLRDEPC---RILEPSAGSGAIV----KGIRAVAPQA 524

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            I                        +R +      +L  N    S  + D      F Y
Sbjct: 525 TIQAFERHFS----------------LREILQMQNVELIGNDFTESAPTAD------FDY 562

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPPF       ++  + EH                      + H    L+     GG
Sbjct: 563 VLMNPPF-------ENGQDAEH----------------------VQHAFRFLK----SGG 589

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV----ALPTDLF--FRTNIATYLW 408
           R   ++S  P F           R+     D ++ +      LP   F    T +AT L 
Sbjct: 590 RLVAIMSPGPFFRSD--------RKAQAFRDWLDTVPHEKRDLPAGAFKESGTGVATVLL 641


>gi|306815671|ref|ZP_07449820.1| hypothetical protein ECNC101_03683 [Escherichia coli NC101]
 gi|305851333|gb|EFM51788.1| hypothetical protein ECNC101_03683 [Escherichia coli NC101]
          Length = 228

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L              F TP  V  +   + L    ALF++ P +  TL +P
Sbjct: 85  DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFEDKPFI--TLSEP 137

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G  +     +     +++P    +    + +  +  +     
Sbjct: 138 ACGAGSMILAMADTLNRSG--YPAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 195

Query: 273 SKNIQQGSTLSKDLF 287
           S   ++   L     
Sbjct: 196 SLCNERRRVLLTPGH 210


>gi|313890916|ref|ZP_07824539.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313120713|gb|EFR43829.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1979

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSTGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQGSKVYGVEKDSLSGRIAKELYSEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKIR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|257084816|ref|ZP_05579177.1| adenine-specific DNA methylase [Enterococcus faecalis Fly1]
 gi|256992846|gb|EEU80148.1| adenine-specific DNA methylase [Enterococcus faecalis Fly1]
          Length = 335

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 119/372 (31%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+    D            + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLVEQLTDK------SEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|14521822|ref|NP_127298.1| hypothetical protein PAB1283 [Pyrococcus abyssi GE5]
 gi|5459042|emb|CAB50528.1| Methylase, puative RNA modification protein [Pyrococcus abyssi GE5]
          Length = 332

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 30/125 (24%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R + DP  GTGG L +A                
Sbjct: 169 PPRIARAMVNL------------TRATREILDPFMGTGGMLIEAGLM------------G 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  K+ F GK F    ++P
Sbjct: 205 LKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDA------TKIKEAFPGKTFEAIATDP 258

Query: 300 PFGKK 304
           P+G  
Sbjct: 259 PYGTS 263


>gi|328952426|ref|YP_004369760.1| endonuclease-methyltransferase fusion protein [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452750|gb|AEB08579.1| endonuclease-methyltransferase fusion protein [Desulfobacca
           acetoxidans DSM 11109]
          Length = 1078

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++  +Y++L+ +   EV     ++ TP  +  L    +    D L        + L DP
Sbjct: 369 DLLKKLYQYLVPQ---EVRHKLGEYYTPDWLAELVLNEVGYEGDTL--------KRLLDP 417

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAG 258
            CG+G FL  A+         H++PP+           G +L P         
Sbjct: 418 ACGSGTFLVLAIQRARQYAHKHRLPPLETAKRIAAHIWGFDLNPLAVIATRTN 470


>gi|257079363|ref|ZP_05573724.1| adenine-specific DNA methylase [Enterococcus faecalis JH1]
 gi|294780268|ref|ZP_06745637.1| N-6 DNA Methylase [Enterococcus faecalis PC1.1]
 gi|307268130|ref|ZP_07549517.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|256987393|gb|EEU74695.1| adenine-specific DNA methylase [Enterococcus faecalis JH1]
 gi|294452532|gb|EFG20965.1| N-6 DNA Methylase [Enterococcus faecalis PC1.1]
 gi|306515520|gb|EFM84048.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 335

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPVGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKASNL 334


>gi|229829879|ref|ZP_04455948.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
 gi|229791177|gb|EEP27291.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
          Length = 2913

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+          G+    
Sbjct: 1183 FYTPKAVI--------DSVYKTLSDMGFKQGNILEPSMGVGNFI----------GNIPDE 1224

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q   L +  F+   F   +
Sbjct: 1225 MNKSKFYGVELDSVSGRIGKL-------------LYPESEVQIKGLEETSFSNNFFDAVI 1271

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++                     +  + L   +   K       GG  
Sbjct: 1272 GNVPFGEYKVNDRE--------------------YNKNNFLIHDYFFAKSIDKVRNGGII 1311

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1312 AFITSSGTM-----DKKDESVRRYLAARTEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1366

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1367 DSIRERDE 1374


>gi|325478350|gb|EGC81465.1| helicase C-terminal domain protein [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 2252

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 69/245 (28%), Gaps = 69/245 (28%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          GS    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GSMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R++L         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYLNARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNR 413
             L  R
Sbjct: 1019 FLKKR 1023


>gi|300867418|ref|ZP_07112073.1| N-6 DNA Methylase family [Oscillatoria sp. PCC 6506]
 gi|300334608|emb|CBN57241.1| N-6 DNA Methylase family [Oscillatoria sp. PCC 6506]
          Length = 1067

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 72/265 (27%), Gaps = 42/265 (15%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                  T S            N   + F +    ++   +   L  L ++    +L   
Sbjct: 201 FADMYAQTISYGLFAARVGHAQNPRNQVFDRRTAGTYIPATNPFLRRLFNSIIETDLLGQ 260

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I    D+   +    D +  +    +         +F                  YE  +
Sbjct: 261 INWAIDDLVELLGRVDMTVILENFGRRTRQSDPVVHF------------------YETFL 302

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATA------------LLLDPDDALFKESPGMIRTLYD 211
             +   + +    + TP  VV                  L   D+    ++      + D
Sbjct: 303 AAYNPALRKSRGVYYTPEPVVSFIVRSVDYILKNRFNLPLGLADNTKNPDTQKPRVQILD 362

Query: 212 PTCGTGGFLTDAMNHVADC----------GSHHKIPPILVPHGQELEPETHAVC--VAGM 259
           P  GTG FL   ++ +               + +   +    G EL    +A+     G+
Sbjct: 363 PATGTGTFLYGVVDRIYQNLEDMGISGSWNQYVQENLLTRLFGFELLMAPYAIAHLKLGL 422

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK 284
            ++ L  +        +   +TL +
Sbjct: 423 QLQNLGYEFSSKQRLGVYLTNTLDE 447


>gi|229081891|ref|ZP_04214383.1| hypothetical protein bcere0023_45190 [Bacillus cereus Rock4-2]
 gi|228701479|gb|EEL53973.1| hypothetical protein bcere0023_45190 [Bacillus cereus Rock4-2]
          Length = 328

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 83/271 (30%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGIQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPVG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|225568387|ref|ZP_03777412.1| hypothetical protein CLOHYLEM_04464 [Clostridium hylemonae DSM
           15053]
 gi|225162615|gb|EEG75234.1| hypothetical protein CLOHYLEM_04464 [Clostridium hylemonae DSM
           15053]
          Length = 303

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 12/138 (8%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F       +   + PR    +              +       + D   G+G  L   
Sbjct: 82  QEFMGYSFRVSGHVLIPRQDTEILVE--------EALKVLAPGMRILDMCTGSGCVLISI 133

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +    +     ++       G ++ PE  AV           ++  R  +    +  T  
Sbjct: 134 LKAGRERLRMERLEGT----GSDISPEAVAVAEYNAARLLGRTETGRGNNGCCARFCTGD 189

Query: 284 KDLFTGKRFHYCLSNPPF 301
                 +R+   +SNPP+
Sbjct: 190 LFEKAEERYDLIVSNPPY 207


>gi|150010437|ref|YP_001305180.1| type I restriction enzyme, M subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|237708421|ref|ZP_04538902.1| type I restriction enzyme [Bacteroides sp. 9_1_42FAA]
 gi|149938861|gb|ABR45558.1| type I restriction enzyme, M subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|229457642|gb|EEO63363.1| type I restriction enzyme [Bacteroides sp. 9_1_42FAA]
          Length = 253

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 26/189 (13%)

Query: 129 KAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-AEDFMTPRDVVHL 186
           K        +  +G I L    +      + +  L     S++       F TP D+  L
Sbjct: 56  KRQQNRHFMEMLTGWIRLMQRELQSGGWFDAFGDLFMAISSKIGRQVNGQFFTPPDICDL 115

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L  D             + + DPTCG    L  A  HV   G++           ++
Sbjct: 116 MV-LCTD------SGETATGKRICDPTCGR---LLLAY-HVRHLGNY--------LVAED 156

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L      + V  ML+     +     S   +          T  +     +  P  ++  
Sbjct: 157 LNHTCCLMTVCNMLVHGCIGEVIHHDSLFPENFMDGWMVNHTLTQ-----TGIPTIRRMS 211

Query: 307 KDKDAVEKE 315
           K++    + 
Sbjct: 212 KEEYRTSRN 220


>gi|227432706|ref|ZP_03914677.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
 gi|227351522|gb|EEJ41777.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
          Length = 1564

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 54/455 (11%), Positives = 128/455 (28%), Gaps = 78/455 (17%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCG 215
             +Y+   +      +E      TP +VV      + D     F +S       + DP  G
Sbjct: 840  TLYDKFFKTAFKSTTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASQGVHILDPFTG 899

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM--LIRRLES 266
            TG F+   + ++       +I             H  E+   ++ +    +      +  
Sbjct: 900  TGTFIVRTLTYLKGHMDAGEISLADITRKFTQELHANEIVLLSYYIAAINIESTFDEING 959

Query: 267  D-----PRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWE 306
            D     P   +       ST ++D+     F                  + NPP+    +
Sbjct: 960  DEEGYVPFEGIVLTDTFESTETEDVLDDDYFGTNDERLKCQQEVPITAIIGNPPYSTGQK 1019

Query: 307  KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLS 361
               D  +  H             K S   +   ++                 G    V +
Sbjct: 1020 STNDDNQNLHYKKLEQSISETYVKNSKAGLKQSLYDSYVKSIRWASDRIVNKGIVGFVSN 1079

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--------------PTDLF-FRTNIATY 406
            +S + +         +R+ L +      I  L                 +F   +     
Sbjct: 1080 ASFIDSQSTDG----LRKSLYDEFNHLYIFNLRGDQRTQGETSRKEGGKIFGSGSRTPIA 1135

Query: 407  LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------DIYV 457
            + IL    ++  +     ++  D+   +  + K   + + +    I          + ++
Sbjct: 1136 ISILVKDGSDNHK-----VHYHDIGDYLSRDDKLNILHDKETILNIDWQTIFPDENNDWI 1190

Query: 458  SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT----------WRKL 507
            ++ +G +   +         I   R + +S   D   +   + +I             ++
Sbjct: 1191 NQRDGDYEAYMPMSDNQSTPIFYERSMGISSNRDAFVIGFSKENIEINTTSMITFYNNEI 1250

Query: 508  SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
              + +   +     + +      W +   K ++KS
Sbjct: 1251 DRISKQKGIFTKNDLDKDETKIKWTDGLEKRALKS 1285


>gi|88800890|ref|ZP_01116443.1| hypothetical protein MED297_00010 [Reinekea sp. MED297]
 gi|88776335|gb|EAR07557.1| hypothetical protein MED297_00010 [Reinekea sp. MED297]
          Length = 250

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 14/115 (12%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++  +Y  L   +     +    F TP  V  +   +            P  + TL +
Sbjct: 80  SDLLGLVYMELGSEY---GKKRMGQFFTPDAVSTMCAEMTAPY----SLTEPDRLHTLLE 132

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP----ETHAVCVAGMLIR 262
           P  G G  L     +V    S       L  +  +L+      T    ++  L+ 
Sbjct: 133 PASGAGSMLLV---YVRVWLSRFHRVDNLGVYAVDLDSLCARMTALQLLSNCLVH 184


>gi|227500536|ref|ZP_03930590.1| superfamily II DNA and RNA helicase [Anaerococcus tetradius ATCC
            35098]
 gi|227217364|gb|EEI82693.1| superfamily II DNA and RNA helicase [Anaerococcus tetradius ATCC
            35098]
          Length = 2089

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQGSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|157952871|ref|YP_001497763.1| hypothetical protein NY2A_B567L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123098|gb|ABT14966.1| hypothetical protein NY2A_B567L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 371

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 73/251 (29%), Gaps = 64/251 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++ G +       F TP+ +            D +F       +++ +P+CG+G FL D 
Sbjct: 12  KKLGMKHRSKMGIFFTPKPL-----------RDIVFHHIHINPQSVLEPSCGSGEFLIDC 60

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D              G EL+     V         +                T  
Sbjct: 61  ETRFPDAN----------ITGVELDETLARVSKENTSRSVIH---------------TQD 95

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F   +F   + NPPF +       AV  +   G                 L++  L 
Sbjct: 96  FLTFDEGKFDLIIGNPPFVQM-----KAVNNQASTGRSN--------------LYIEILF 136

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTDLFFRT 401
             +    N  G  A++L S+ +     G      R  +L   ++    I       F  T
Sbjct: 137 KCMTRHLNDNGVLAMILPSTIM----NGHFSRPTRELILSKKILHFETI---REHTFKDT 189

Query: 402 NIATYLWILSN 412
                + ++ N
Sbjct: 190 KAGVSILVVQN 200


>gi|157952534|ref|YP_001497426.1| hypothetical protein NY2A_B230L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|2454656|gb|AAC03125.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
           NY2A]
 gi|155122761|gb|ABT14629.1| hypothetical protein NY2A_B230L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 382

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 79/263 (30%), Gaps = 66/263 (25%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
              ++   +       F TP+D+      ++ +  D +    P   + + +PTCGTG F+
Sbjct: 10  EFQKQLSKQERSTGGVFFTPKDIRD----IIFEELDRISDFEP---KNILEPTCGTGEFI 62

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            D      +              G E++P +  +          +      +  +    +
Sbjct: 63  DDCRRVYGNAH----------ILGVEIDPRSAELAR--------DDSKNEIIVHDFITWN 104

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           T        ++F   + NPPF  +                  R  P + K      + ++
Sbjct: 105 TT-------EKFDLIIGNPPFFTRPSG--------------FRHDPNVVKCRSNICIEVV 143

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-------LENDLIEAIVAL 393
           H    +       G  A+VL  S L +         I   +       ++ +        
Sbjct: 144 H--KCMTGHLAENGILAMVLPMSLLNSKFYTPTVDRITTTMDVMFVREIKKNN------- 194

Query: 394 PTDLFFRTNIATYLWILSNRKTE 416
               F  TN+   ++I+      
Sbjct: 195 ----FMGTNVRVMVFIIRKCPPR 213


>gi|332158594|ref|YP_004423873.1| hypothetical protein PNA2_0953 [Pyrococcus sp. NA2]
 gi|331034057|gb|AEC51869.1| hypothetical protein PNA2_0953 [Pyrococcus sp. NA2]
          Length = 316

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 30/141 (21%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R L DP  GTGG L +A                
Sbjct: 154 PPRIARAMVNL------------TRARRELLDPFMGTGGMLIEAGLM------------G 189

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  ++ F GK F    ++P
Sbjct: 190 LKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDA------TKIEEAFPGKTFEAIATDP 243

Query: 300 PFGKKWEKDKDAVEKEHKNGE 320
           P+G       D  E   ++ E
Sbjct: 244 PYGTSTTLPIDRDELYRRSLE 264


>gi|327488511|sp|Q9UY84|TMG10_PYRAB RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=(Pab)Trm-G10; AltName:
           Full=tRNA:G10 dimethyltransferase
          Length = 329

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 30/125 (24%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R + DP  GTGG L +A                
Sbjct: 166 PPRIARAMVNL------------TRATREILDPFMGTGGMLIEAGLM------------G 201

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  K+ F GK F    ++P
Sbjct: 202 LKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDA------TKIKEAFPGKTFEAIATDP 255

Query: 300 PFGKK 304
           P+G  
Sbjct: 256 PYGTS 260


>gi|67925379|ref|ZP_00518729.1| hypothetical protein CwatDRAFT_0727 [Crocosphaera watsonii WH 8501]
 gi|67852775|gb|EAM48184.1| hypothetical protein CwatDRAFT_0727 [Crocosphaera watsonii WH 8501]
          Length = 516

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 79/245 (32%), Gaps = 44/245 (17%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  V  +    + + +           +T+ DP  G G F         + 
Sbjct: 15  RKDYGQFFTPSIVSSIMAKWITENEP----------KTILDPAFGLGVFY--------EE 56

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S   +         E++           ++  L++         + Q   +S+  +   
Sbjct: 57  ISKLSLQYQWNLTAYEID---------NNILDYLDNIQDNKNITILNQDFLVSEINY--- 104

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+     + +  + + +   ++ +   G   +   ++  +  +  K     
Sbjct: 105 -YDAIICNPPY----MRFQKFINRHNILPKIEQ-QIGKKLVGYSNIASIFLI--KALQQL 156

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYLW 408
           N  GR A +L       G       EI++ L+E  L++ I+      D+F        + 
Sbjct: 157 NSNGRLAFILPFEFFNTGYG----KEIKKTLIEKHLLKQIIIFANEKDIFPDATTTICIL 212

Query: 409 ILSNR 413
              N 
Sbjct: 213 FCENN 217


>gi|163756738|ref|ZP_02163849.1| hypothetical protein KAOT1_00705 [Kordia algicida OT-1]
 gi|161323413|gb|EDP94751.1| hypothetical protein KAOT1_00705 [Kordia algicida OT-1]
          Length = 1026

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 74/473 (15%), Positives = 142/473 (30%), Gaps = 70/473 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           IL    +R L       +  +   YL    ++++      +               L + 
Sbjct: 186 ILRLIFIRYLIDR----KVKIDNTYLPGNSNDVNERRKNFIELIKKPLKLNLLFKKLNTK 241

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                 +      +        D  F   +   E         + F         +P  V
Sbjct: 242 FNGVLFKKQNLVLTQKQSNDLADI-FKGELQD-ENNLFNGFFFEIFD-----FSIIPVEV 294

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE LI     +  +      TP  +V     +L D  D   +E       +++   
Sbjct: 295 ISGIYESLID---EKTRKLDSAVYTPPFLVE---YILNDTVDKYLEEKNISECKIFEVAV 348

Query: 215 GTGGFLTDAMNHV-------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G+G FL  ++  +              +     +        G ++  E   V    + I
Sbjct: 349 GSGIFLVQSLRKMIDKELELNPSQSHKEFSKRIRQIATRNLFGVDINEEALKVTCFSIYI 408

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWE 306
             L+    +D+  + +    L K+LF    F                + L NPP+ K   
Sbjct: 409 ALLDYQDPKDI-DSYEFPDLLDKNLFKANFFDTNHRFNKIIKTEIPKFILGNPPW-KNGS 466

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK-LELPPNGGGRAAIVLSSSPL 365
           KDK  V+    N   G        +SD  +     L  K            ++V++S   
Sbjct: 467 KDKIHVDYLKSNKLSGV-------VSDYQLAQSFILRTKDFSQNNLNTPICSLVVTSKVF 519

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTE-ERRGK 421
           +N +A       ++  L    +   + L     D+F      + + + +    E   + +
Sbjct: 520 YNNKA----INFKKRFLSKFNLTKYLDLSPVRRDIFKNAINPSAIILFNYANDEITNKNQ 575

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           V+      +  ++  +     I      + I   Y  R    +S M    T+G
Sbjct: 576 VKF---YSIKKNLFLKKFNMLIFEKQDIKNIPQEYFMR----YSYMFKVATYG 621


>gi|88603162|ref|YP_503340.1| hypothetical protein Mhun_1909 [Methanospirillum hungatei JF-1]
 gi|88188624|gb|ABD41621.1| hypothetical protein Mhun_1909 [Methanospirillum hungatei JF-1]
          Length = 147

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 26 FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
             + +   +L    ++ +       + A+ E  +  GGS  D+ + 
Sbjct: 1  MDASQYKDYVLVLLFVKYVSDKYAGDKKALIE--VPSGGSFSDMVAL 45


>gi|310831462|ref|YP_003970105.1| putative methyltransferase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386646|gb|ADO67506.1| putative methyltransferase [Cafeteria roenbergensis virus BV-PW1]
          Length = 1334

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 32/185 (17%)

Query: 196  DALFKESPGMIRTLYDPTCGTGGFLTDAM--------NHVADCGSHHKIPPILVPHGQEL 247
            D +  +     R +++P  G GGFL D +        +   D    +KI      +  ++
Sbjct: 941  DKIPLDFWSKKRKVFEPCSGKGGFLMDIVDKFMIGLKDKYPDDKKRYKIIVEKCLYFSDI 1000

Query: 248  EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKK 304
             P         + + +L  DP  D   N  +G+TL  D+      + F   + NPP+   
Sbjct: 1001 NPT-------NIFLNKLLLDPYGDYKLNYNEGNTLELDIKEKWGLEGFDAVIGNPPYQAP 1053

Query: 305  WEKDKDAVEKEHK------------NGELGRFGPGLPKISDGSM--LFLMHLANKLELPP 350
                K +    +K            NG L    P L +  + ++  L L +    L++  
Sbjct: 1054 SLNKKSSKILWNKFVNKSINYFLQINGYLLYIHPALWRKPNHTLLKLILENQLIYLKIYN 1113

Query: 351  NGGGR 355
            +  G+
Sbjct: 1114 DTDGK 1118


>gi|296115678|ref|ZP_06834304.1| putative type II DNA modification enzyme [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977655|gb|EFG84407.1| putative type II DNA modification enzyme [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 768

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 31/163 (19%)

Query: 149 TVPDRVMSNIYEHLIR-RFGSEVS-------------EGAEDFMTPRDVVHLATALLLDP 194
            V    ++ +YE L+  R GS                  +  + TP  +V       LDP
Sbjct: 174 RVGSGDLATVYESLLEIRPGSVGGLFTLDDAGRGNDRRTSGSYYTPDSLVQSLLDSTLDP 233

Query: 195 D----DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------- 239
                +A    +  +   + DP CG G FL  A   +A     H  P             
Sbjct: 234 VMDRAEASGGAAALLALRVIDPACGGGHFLLAAARRMAMRIVRHHAPKGGEYRTILRDVV 293

Query: 240 -LVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGS 280
               +G +  P    +    + I   +   P   L+ NI  G+
Sbjct: 294 ARCIYGVDCNPMAVELTRMALWIETGIPGRPLCFLAANILCGN 336


>gi|288920049|ref|ZP_06414368.1| conserved hypothetical protein [Frankia sp. EUN1f]
 gi|288348532|gb|EFC82790.1| conserved hypothetical protein [Frankia sp. EUN1f]
          Length = 1196

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 99/373 (26%), Gaps = 76/373 (20%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           +L    +R  E         + + YLA   +     +  +   +   +    +   L + 
Sbjct: 69  MLGTVFVRFCEDN-----GLIGDPYLAGPTTARLTLAEERTEDFYRRHPERTARDWLQAG 123

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDT 149
                     A   D           S   A+       +      +  +F+        
Sbjct: 124 FGEIAKVPVGAGLFDRQHNALFQIPLSHDAAKELLTFWRRRTEAGTLVHDFTDPAW---- 179

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
              R + ++Y+ L      +V +      TP  V      L L P     +E    +  L
Sbjct: 180 -DTRFLGDLYQDL----SEDVRKKYALLQTPEFVEEFILDLTLTP---AIEEFGYDVVKL 231

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAVCVAG-- 258
            DPTCG+G FL  A + +     ++     +           HG ++ P   A+      
Sbjct: 232 IDPTCGSGHFLLGAFHRLLAEWENNAPDRDVFERVRLALDAIHGVDINPYAVAITRFRLV 291

Query: 259 -------------------MLIRRLESDPRRDLSKNIQQGSTLSK--------------- 284
                              + +     D      +                         
Sbjct: 292 VEVLRAAGIRTLAAAVGYQLALHVAVGDSLIKGRQLKIFDDARDNLAEFSYVTEDVREHS 351

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL    R+H  + NPP+            K+    ++ R   G    S    +  M    
Sbjct: 352 DLLKEDRYHVVVGNPPY---------ITVKDASLNKMYRKLYGACGGSYALSVPFMQRFF 402

Query: 345 KLELPPNGGGRAA 357
           +L    +  GR A
Sbjct: 403 ELAKEADKEGRGA 415


>gi|324111110|gb|EGC05096.1| hypothetical protein ERIG_04245 [Escherichia fergusonii B253]
          Length = 2255

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 170 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 213 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  + + E   K+ L++ + L
Sbjct: 268 DVVLMRKHSAEMAEKIPLVDKSTL 291


>gi|124006447|ref|ZP_01691280.1| modification methylase HincII [Microscilla marina ATCC 23134]
 gi|123987860|gb|EAY27540.1| modification methylase HincII [Microscilla marina ATCC 23134]
          Length = 522

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 77/253 (30%), Gaps = 61/253 (24%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                  + TP  VV    +L   P DA           + +P+CG G F    M  +  
Sbjct: 6   EKNKFGQYFTPEAVVDFMISLTDAPSDAQ----------VLEPSCGAGIF----MERLQK 51

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G ++     L  +  E++P          L    +    +                   
Sbjct: 52  KGFYN-----LTAY--EIDPS---------LAHGFDGVQYQSFVT-----------AHIT 84

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++F   + NPP+ +   K+ +   KE          P      +    +L     K    
Sbjct: 85  QKFDLVIGNPPYIR--WKNLEPALKEELAAH-----PLWQTYFNRLCDYLFIFILKSIEV 137

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI----AT 405
            N  G+   +     L    + S    +R ++++N   E I       F  T I    + 
Sbjct: 138 LNDQGQLIFICPEYWLNTTHSLS----LRNYMVQNGCFEQIYH-----FNETPIFDNASV 188

Query: 406 YLWILSNRKTEER 418
            + +    KT+ R
Sbjct: 189 SVIVFKYIKTQSR 201


>gi|4426955|gb|AAD20627.1| DNA methylase homolog DarB' [enterobacteria phage P1]
          Length = 512

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG +            +N +     P   +   GS      +   L+
Sbjct: 45  PNDSFDHVVGNVPFGGR---------DNTRNID----KPYAEETDMGSY----FMLRMLD 87

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 88  KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 142

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 143 DVVLMRKHPAEMAEKIPLVHESTL 166


>gi|256821200|ref|YP_003142399.1| helicase domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256799180|gb|ACV29834.1| helicase domain protein [Anaerococcus prevotii DSM 20548]
          Length = 2098

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IKGSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|86609160|ref|YP_477922.1| hypothetical protein CYB_1700 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557702|gb|ABD02659.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1504

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 41/170 (24%)

Query: 153 RVMSNIYEHLIRR----------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             + ++YE L+                  +GSE       +  P  V  L  + L    +
Sbjct: 392 EELGSVYESLLDYQPQIVTGQGAPRFELSYGSERKSTGSYYTPPELVAELIRSALEPVIE 451

Query: 197 ALFKESPGMIR--------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------- 240
              K +              + DP CG+G FL  A   +    +  +             
Sbjct: 452 ERLKAARPPEEKEQAILSIRVCDPACGSGHFLLAAARRLGKELAKIRTGEEEPAPKRVRE 511

Query: 241 --------VPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGST 281
                     +G +  P    +C   + +       P   L  +I+ G +
Sbjct: 512 AIRDVVAHCIYGVDKNPLAVELCRVALWLEAHCAGKPLTFLDHHIKCGDS 561


>gi|302543769|ref|ZP_07296111.1| DNA modification methyltransferase-related protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461387|gb|EFL24480.1| DNA modification methyltransferase-related protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 929

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 46/267 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES----- 202
             V   +   ++E  +             F +  D+  +   ++++P      ++     
Sbjct: 270 SAVRPEIFGTLFEGSMEESERHA--QGAHFTSQTDIAKIVGPVIVNPWRERISKAGAIPE 327

Query: 203 ------PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI------------------PP 238
                      T+ DP CG+G FL  A   +       +                    P
Sbjct: 328 LEKLLLELSSYTVLDPACGSGNFLYVAYRELRRIEHEIQNLISERRRGRHVGQQSISYVP 387

Query: 239 ILVPHGQELEPETHAVCVAGMLIR-----RLESDPRRDLSKNIQQGSTLSKDLFTGK--R 291
                G ++ P    V    M++          D +  L  +   G+ ++ D    +  +
Sbjct: 388 TDHFFGIDINPFAVEVAKVTMMLAKKLSTDELGDHQEVLPLDNLSGTIVAADALFSEWPK 447

Query: 292 FHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +  + NPPF G++   D    E       L R  P +  +SD    F+ +   K     
Sbjct: 448 ANAIVGNPPFLGRRGMIDDLGAEYCQL---LSREYPNISGVSD----FVTYWFPKAHAHL 500

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEI 377
             GGRA +V + S   N    S    I
Sbjct: 501 PPGGRAGLVATKSIRENDSRKSSLDYI 527


>gi|215427390|ref|ZP_03425309.1| helicase [Mycobacterium tuberculosis T92]
 gi|289750611|ref|ZP_06509989.1| helicase [Mycobacterium tuberculosis T92]
 gi|289691198|gb|EFD58627.1| helicase [Mycobacterium tuberculosis T92]
          Length = 1161

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 62/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH--LANKLELPPN---GGGRAAIVLSS 362
              D           GR      K S   +   ++           +     G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|300021889|ref|YP_003754500.1| N-6 DNA methylase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523710|gb|ADJ22179.1| N-6 DNA methylase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 957

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 74/266 (27%), Gaps = 48/266 (18%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
               +P  ++S+IY+  +       ++      TP  +V L     L  D          
Sbjct: 306 SFKDLPVELISHIYQLFV-------TDTDSSVYTPPTLVRLMLDEALSWD--RIDRLMAS 356

Query: 206 IRTLYDPTCGTGGFLTDAMN----HVADCGSHHKIPPIL------VPHGQELEPETHAVC 255
              + DP CG+G FL +A      H        K             HG +LE     + 
Sbjct: 357 REIVLDPACGSGVFLVEAYKRLVLHWRSRNDWAKPGVDELRTLLDRVHGIDLEAGAVELA 416

Query: 256 VAGMLIRRLES-------------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
              + +   ++                 D S + +      ++          + NPPF 
Sbjct: 417 AFSLCLALCDALEPEEIRASVKLFPKLADASLHKRCFFEAKEEALIKAPVGVLVGNPPFE 476

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP---PNGGGRAAIV 359
                               +          G +         L         GG  +++
Sbjct: 477 SSLTT------------PAAKRAYAAYVKQHGKLADQQVAYLFLHEAMGMTAEGGVLSMI 524

Query: 360 LSSSPLFNGRAGS-GESEIRRWLLEN 384
             S  L+N  AG   ES  +RW +  
Sbjct: 525 QPSGFLYNQHAGEFRESFFKRWNVRE 550


>gi|133757317|ref|YP_001096236.1| hypothetical protein pLEW279a_p37 [Corynebacterium sp. L2-79-05]
 gi|110084201|gb|ABG49355.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 581

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 59/217 (27%), Gaps = 45/217 (20%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------- 233
            L +                      DP CG G FL  A   +    +            
Sbjct: 7   KLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQRRGE 66

Query: 234 ---------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR-------------RD 271
                     +   I   +G EL      +    M +   +++                 
Sbjct: 67  TGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRLPIT 126

Query: 272 LSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           ++ +I  G+ L+ D            +   NPPF  +  + K  +E+             
Sbjct: 127 ITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKN---- 182

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              IS    +   H+   L+L     GR A V ++S 
Sbjct: 183 ---ISRLDYVTCWHI-KSLDLFSTRNGRFAFVTTNSI 215


>gi|332708412|ref|ZP_08428389.1| hypothetical protein LYNGBM3L_19280 [Lyngbya majuscula 3L]
 gi|332352815|gb|EGJ32378.1| hypothetical protein LYNGBM3L_19280 [Lyngbya majuscula 3L]
          Length = 566

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  F ++ SE      T R+VV     L          + P     + +P+ G G FL  
Sbjct: 16  VGSFAAKSSEERGAIFTRREVVEFILDLT-----GYTVDRPLPDYRILEPSIGEGDFLVP 70

Query: 223 AMNHVADCGSHHKIPPIL-------VPHGQELEPETHAVCVAGMLI----RRLE-SDPRR 270
            +  +      H    +             E+ P++       +L       +   D  +
Sbjct: 71  IVERLLTAYGAHDSNQVRLVDSLHNSIRAVEINPQSFENTRIKLLRLLQHHGINQDDAYQ 130

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            L+  + +G  L  DL     F + + NPP+
Sbjct: 131 LLTSWLIEGDFLLVDLPGS--FTHAVGNPPY 159


>gi|220674521|emb|CAR69082.1| putative conjugative transposon DNA recombination protein
           [Streptococcus pneumoniae ATCC 700669]
          Length = 2088

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + D             +G EL+ 
Sbjct: 488 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRDKSE---------LYGVELDS 538

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 539 VTGAIAK---KLHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 585

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 586 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 624

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T +      + + 
Sbjct: 625 DN-----VLQEIKTNTHFLGGVRLPDTAFKSIAGTRVTTDILFFQKDQAKN 670


>gi|154795688|gb|ABS86814.1| putative helicase/DNA methyltransferase [Helicobacter cetorum]
          Length = 4043

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 66/470 (14%), Positives = 143/470 (30%), Gaps = 83/470 (17%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            + F   +    + + TP     L    +    + L   +    + +++P+CGTG FL   
Sbjct: 2049 QEFEKALLSTRDAYYTP----KLVIDSIYAGLEQLGFNNDDNKKEIFEPSCGTGKFL--- 2101

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                    ++          G EL+P              + +   + L  N +  +   
Sbjct: 2102 --------AYAPSDKNYHFVGTELDP--------------ISAGISQFLYPNQRIENKAL 2139

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            ++    + +   + NPP+G+      + +E    +      G  + ++ +          
Sbjct: 2140 QNYDFYQDYDAFIGNPPYGQHKIYSSNDMELSGASIHNYFLGKAIKELKE---------- 2189

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
                      G  A V+SS  L      +  S++R  + +       + LP  +F  T  
Sbjct: 2190 ---------DGIGAFVVSSWFL-----DAKNSKMREHIAKQATFLGAIRLPNSVFKGTGA 2235

Query: 404  ATY--LWILSNRKTEERRGKV--------QLINATDLWTSIRNEGKKRRIIND------- 446
                 +         E              LI A + + +   E  +   +++       
Sbjct: 2236 EVTSDIVFFKKGVNSEINQDFTHSKLYYEDLIKALNNYHAKAIEILQENKLDNLVDRAKL 2295

Query: 447  DQRRQILDIYVSRENGKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADIT 503
            +    + + +  +   + S    +D  TFGY          +   +DK G  +++  + T
Sbjct: 2296 NIINILANYFNLKPQNEQSDFYNIDTSTFGYSE---EDYQTIKDFIDKVGENKIDLNEQT 2352

Query: 504  WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV-----KASKSFIV 558
              +    H    L  L     +       +   K  ++  E K L +     K  K+   
Sbjct: 2353 LNEYFTNHPQNILGNLSLEKTRYSEEVNGKRIYKYELQVLENKDLDLSNAISKIIKNLPK 2412

Query: 559  AFINAFGRKDPRADPVTDVNGE--WIPDTNLTEYENVPYLESIQDYFVRE 606
                   +       + D N E        + + E    ++    Y+  E
Sbjct: 2413 NVYQYHKKTIKTNALIIDRNDERYKEVSRLIKDLEVGELVKFDNRYYKLE 2462


>gi|38261096|ref|NP_940747.1| GcrY [Arcanobacterium pyogenes]
 gi|37993851|gb|AAR07009.1| GcrY [Arcanobacterium pyogenes]
          Length = 910

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 78/279 (27%), Gaps = 65/279 (23%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM----------TPRDVVHLAT- 188
            +  +     +   V  ++++ +  +       G  +             P  +  L   
Sbjct: 315 LNACDFDWSKIDVSVFGSLFQLVKSKEA---RRGDGEHYTSKTNILKTIGPLFLDELRAQ 371

Query: 189 --ALLLDPDDALFKESPGMI----RTLYDPTCGTGGFLTDAMNHVADCGSH--------- 233
              L+ +P   + K              DP CG G FL  A   +    +          
Sbjct: 372 ADKLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQRR 431

Query: 234 -----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR------------- 269
                       +   I   +G EL      +    M +   +++               
Sbjct: 432 GETGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRLP 491

Query: 270 RDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             ++ +I  G+ L+ D            +   NPPF  +  + K  +E+           
Sbjct: 492 ITITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKN-- 549

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                IS    +   H+   L+L     GR A V ++S 
Sbjct: 550 -----ISRLDYVTCWHI-KSLDLFSTRNGRFAFVTTNSI 582


>gi|303233869|ref|ZP_07320520.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302495013|gb|EFL54768.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 1800

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQGSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|260583302|ref|ZP_05851077.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Haemophilus influenzae NT127]
 gi|260093662|gb|EEW77575.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Haemophilus influenzae NT127]
          Length = 292

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 70/216 (32%), Gaps = 34/216 (15%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L  +  A+  +                 N+Q   +   D  TG +F   +S
Sbjct: 151 --LEIIGVDLMSDVVALAQSN----------AERNQLNVQFLQSCWFDNITG-KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRA 356
           NPP+           + EH +    RF P    +++G     L H+        N  G  
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANGEGYADLRHIIELASSYLNSNGV- 248

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
                   L       GE ++R   LEN    +E +
Sbjct: 249 -------LLLEHGWQQGE-KVRSIFLENYWEMVETV 276


>gi|57640916|ref|YP_183394.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           kodakarensis KOD1]
 gi|57159240|dbj|BAD85170.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           kodakarensis KOD1]
          Length = 331

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 26/142 (18%)

Query: 163 IRRFGSEVSEGAEDFMTP--RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +R F  +  E  +    P  R +       L               R + DP  G GG L
Sbjct: 141 LRYFDPKDFEKRKAHHRPFFRPIS------LHPRVSRALVNLTKATREILDPFMGAGGIL 194

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +A                L  +G ++ PE        +    +     +          
Sbjct: 195 IEAG------------LLGLRVYGVDIRPEMVEGAETNLKHYGVRDYTLKLGDA------ 236

Query: 281 TLSKDLFTGKRFHYCLSNPPFG 302
           T  +DLF  K+F    ++PP+G
Sbjct: 237 TRLEDLFPDKKFEAVATDPPYG 258


>gi|157372289|ref|YP_001480278.1| hypothetical protein Spro_4055 [Serratia proteamaculans 568]
 gi|157324053|gb|ABV43150.1| conserved hypothetical protein [Serratia proteamaculans 568]
          Length = 188

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +   +  L         +    F TP  V  +   L         +  P +  T+ +P
Sbjct: 47  DFLGMTFMQL-----ELGDKHRGQFFTPWSVASMMAKLQFTGLKQQLQTQPFV--TISEP 99

Query: 213 TCGTGGFLTDAM 224
            CG GG +  A 
Sbjct: 100 GCGAGGMMIAAA 111


>gi|116662287|ref|YP_829341.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
 gi|116613051|gb|ABK05760.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
          Length = 1613

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 92/324 (28%), Gaps = 59/324 (18%)

Query: 109  DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            D+   + E ++  S +  LE      +         +       ++++ +YE   +    
Sbjct: 786  DSMVLVLEQYNLDSEVQNLEDFYRSVR----VKAEGVGTAAGKQKIITELYEKFFKLAFP 841

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              +E      TP +VV      + D                + DP  GTG F+   +   
Sbjct: 842  RTAESLGIVYTPVEVVDFILRAVDDVLKKEFGVSISDEGVHVLDPFTGTGTFVVRLL--- 898

Query: 228  ADCGSHHKIPPILVPHGQELEPE-----THAVCVAGM--LIRRL---------------- 264
                   K   +L  + QEL         + +    +      +                
Sbjct: 899  --QSGLIKPEDLLRKYTQELHANELLLMAYYIAAINIEATFHGILTEQAVEQGRDADTVG 956

Query: 265  ----ESDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPF--GKKWEKD 308
                      D  +  + G TL + +FT                 + NPP+  G+    D
Sbjct: 957  YESFGGIVLTDTFQMTEDGDTLDEHVFTNNNDRVVKQNALDIRVIIGNPPYSVGQSSGND 1016

Query: 309  KDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHL-----ANKLELPPNGGGRAAIVLSS 362
             +A  K     E  R         ++ + L+  ++     A+   L    GG    V + 
Sbjct: 1017 NNANLKYPTLDESIRRSYVAQSTATNVNSLYDSYIRAIRWASNRVLNSEHGGVVCYVSNG 1076

Query: 363  SPLFNGRAGSGESEIRRWLLENDL 386
              +    A      +R+ L     
Sbjct: 1077 GYIDGNTADG----LRKTLTTEFH 1096


>gi|326777770|ref|ZP_08237035.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658103|gb|EGE42949.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 1392

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 62/249 (24%)

Query: 149 TVPDRVMSNIYEHLI----RRFGSEVS-----------EGAEDFMTPRDVVHLATALLLD 193
            +    + +IYE L+    +   ++ S           +    + TP  ++       LD
Sbjct: 424 NMGAEELGSIYESLLELVPKHSATDRSFELVNRLGNDRKKTGSYYTPASLIETLLDSTLD 483

Query: 194 P--DDALFKESPGMIR-----------------TLYDPTCGTGGFLTDA----MNHVADC 230
           P  DDA  +                        T+ DP CG+G FL  A       VA  
Sbjct: 484 PVIDDAQKRGERAAAEAGEPDPRKAVIRELLSLTVCDPACGSGHFLVAAARRIAKRVAAV 543

Query: 231 GSHHKIPPILV------------PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQ 277
             ++  PP +              +G +L P    +    + +  LE       L  +I+
Sbjct: 544 DENNPEPPPVAVRSALHKVVARCLYGVDLNPMAVELAKVSLWLEALEPGKALGFLDAHIK 603

Query: 278 QGS-------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            G+       +L  D    K F     +     K+ +  +      + G+ G F   L  
Sbjct: 604 HGNGLVGTTPSLMLDGIPNKAFKAVEGD---DDKFARFLEKRNDHERKGQRGLFDVELDP 660

Query: 331 I-SDGSMLF 338
             S+     
Sbjct: 661 KVSNTMFAS 669


>gi|317178356|dbj|BAJ56144.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 366

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 20/194 (10%)

Query: 42  RRLECALEPTRS-----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +      ++ + +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFKNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH---PDTVPD 152
           + NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++     D   D
Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSILKDLNDD 290

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--- 208
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++   
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSSLKTHFKDAPLGLKSALD 350

Query: 209 -----LYDPTCGTG 217
                L D   GTG
Sbjct: 351 NENIKLLDFATGTG 364


>gi|557885|gb|AAA50500.1| AccI methylase [Bergeyella zoohelcum]
 gi|1098130|prf||2115270B methyltransferase AccI
          Length = 541

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 90/295 (30%), Gaps = 60/295 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  + +     +L             ++T+ +P  G G F    ++   + 
Sbjct: 26  RKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLGVFSRAILSQQKEI 76

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G E++                        + NI     +  D     
Sbjct: 77  N----------IKGFEVDETIFENAK---------EYFDDFENVNILLQDYMYNDWKN-- 115

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   + NPP+ K  + D   + KE +     +         +G          K     
Sbjct: 116 KYDGIICNPPYFKFHDYDNKNILKEIETNLKCKL--------NGFTNLYTLFLLKSIHQL 167

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTDLFFRTNIATYLW 408
           +  GR A ++ S  L +         ++ +L+++  +    ++    ++F        + 
Sbjct: 168 SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTASII 223

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           + +N   +    KVQ            N  +  + ++  +  +I++ Y +    +
Sbjct: 224 LCAN---DNITDKVQF-----------NNIQSLQDLS--KIDEIINKYPNFLETE 262


>gi|225856813|ref|YP_002738324.1| SNF2 family protein [Streptococcus pneumoniae P1031]
 gi|225725125|gb|ACO20977.1| SNF2 family protein [Streptococcus pneumoniae P1031]
          Length = 2076

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + D             +G EL+ 
Sbjct: 492 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRDKSE---------LYGVELDS 542

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 543 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 589

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 590 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 628

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 629 DN-----VLQEIKSNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 674


>gi|299144309|ref|ZP_07037389.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518794|gb|EFI42533.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 2878

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 73/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+            +           + +P+ G G F+          G+    
Sbjct: 1148 FYTPKTVIDSI--------YSTLSGMEFKNGNILEPSMGIGNFI----------GNLPDE 1189

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q   L +  F+   F   +
Sbjct: 1190 MKKSKFYGVELDSVSGRIGKL-------------LYPESDIQIKGLEETSFSNNFFDVVI 1236

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++                     +  + L   +   K       GG  
Sbjct: 1237 GNVPFGEYKVNDRE--------------------YNKNNFLIHDYFFAKSIDKVRNGGII 1276

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1277 AFITSSGTM-----DKKDESVRRYLAARAGFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1331

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1332 DSIRERDE 1339


>gi|295099158|emb|CBK88247.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 2848

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 51/208 (24%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            + +P+CG G F+          G           +G E++  +  +              
Sbjct: 1361 ILEPSCGVGNFI----------GMLPDSMADSKAYGVEIDSISGRIA------------- 1397

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            ++    +    +   K       F   + N PFG    +DK   +K H       FG  L
Sbjct: 1398 QQLYQNSSIAVNGFEKVQMPDSFFDVAIGNVPFGDFKVRDKK-YDKNHWLIHDYFFGKTL 1456

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             K+                     GG  A + S   +         S +R++L +   + 
Sbjct: 1457 DKV-------------------RPGGVIAFITSKGTM-----DKENSAVRKYLAQRADLI 1492

Query: 389  AIVALPTDLF---FRTNIATYLWILSNR 413
              + LP + F     T + + +  L  R
Sbjct: 1493 GAIRLPNNAFKANAGTEVTSDIIFLQKR 1520


>gi|229158246|ref|ZP_04286313.1| hypothetical protein bcere0010_44240 [Bacillus cereus ATCC 4342]
 gi|228625204|gb|EEK81964.1| hypothetical protein bcere0010_44240 [Bacillus cereus ATCC 4342]
          Length = 328

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         + +  
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEIA-- 119

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
               + DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 120 ----VLDPAIGTGNLMTTVFNSAKEGLA-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|234331|gb|AAC60387.1| methyltransferase [Acinetobacter calcoaceticus]
          Length = 540

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 90/295 (30%), Gaps = 60/295 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  + +     +L             ++T+ +P  G G F    ++   + 
Sbjct: 26  RKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLGVFSRAILSQQKEI 76

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G E++                        + NI     +  D     
Sbjct: 77  N----------IKGFEVDETIFENAK---------EYFDDFENVNILLQDYMYNDWKN-- 115

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   + NPP+ K  + D   + KE +     +         +G          K     
Sbjct: 116 KYDGIICNPPYFKFHDYDNKNILKEIETNLKCKL--------NGFTNLYTLFLLKSIHQL 167

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTDLFFRTNIATYLW 408
           +  GR A ++ S  L +         ++ +L+++  +    ++    ++F        + 
Sbjct: 168 SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTASII 223

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           + +N   +    KVQ            N  +  + ++  +  +I++ Y +    +
Sbjct: 224 LCAN---DNITDKVQF-----------NNIQSLQDLS--KIDEIINKYPNFLETE 262


>gi|47565053|ref|ZP_00236096.1| adenine-specific methyltransferase [Bacillus cereus G9241]
 gi|228987889|ref|ZP_04147997.1| hypothetical protein bthur0001_45560 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|47557839|gb|EAL16164.1| adenine-specific methyltransferase [Bacillus cereus G9241]
 gi|228771812|gb|EEM20270.1| hypothetical protein bthur0001_45560 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         + +  
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEIA-- 121

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
               + DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 122 ----VLDPAIGTGNLMTTVFNSAKEGLA-------MSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 293


>gi|260801796|ref|XP_002595781.1| hypothetical protein BRAFLDRAFT_287617 [Branchiostoma floridae]
 gi|229281029|gb|EEN51793.1| hypothetical protein BRAFLDRAFT_287617 [Branchiostoma floridae]
          Length = 486

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 4/169 (2%)

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +   +  I  +          ++ R    + + +IL IY++ +N   SR+L    FG  +
Sbjct: 251 KNHNLLFI--SKEHEDFDGILEQFRGAAAEFKGKILFIYINVDNDDHSRIL--EFFGLNK 306

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
            +  +   +S   D T       +IT   +    Q F    +K  +         +    
Sbjct: 307 EECPQVRLISLDEDMTKYKPETEEITTENMKAFVQGFIDKTIKAFLMSQDVPEDWDKEGV 366

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
           + +     + + +  +K+ +V F   +     +  P+ D  GE   D+ 
Sbjct: 367 KVLVGKNFREVALDENKAVLVEFYAPWCGHCKQLAPIYDELGEKFKDSE 415


>gi|295090193|emb|CBK76300.1| DNA methylase [Clostridium cf. saccharolyticum K10]
          Length = 2605

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 73/258 (28%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +       T   V+               ++       + +P+CG G F    
Sbjct: 1047 EEYTAARASTLNAHYTSPTVIRAI--------YDAVEQMGFRTGNILEPSCGVGNFF--- 1095

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1096 -------GMLPESMAGSRLYGVELDSISGRIARQLYPKADITVAGFETTDRRDF------ 1142

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+    DK             + G  +          
Sbjct: 1143 -------------YDLAIGNVPFGQYQVNDKA----------YNKLGFNIHN-------- 1171

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +   + LP + F
Sbjct: 1172 --YFFAKSLDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAF 1224

Query: 399  ---FRTNIATYLWILSNR 413
                 T++ + +  L  R
Sbjct: 1225 RANAGTDVVSDILFLQKR 1242


>gi|238063211|ref|ZP_04607920.1| DNA methylase [Micromonospora sp. ATCC 39149]
 gi|237885022|gb|EEP73850.1| DNA methylase [Micromonospora sp. ATCC 39149]
          Length = 1188

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 45/275 (16%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T+   +A +   ++    +              +L    +R  E       + V   ++ 
Sbjct: 60  TDARRTAGTFETWLEDVLDQ---AAVAW-----VLGCVFVRFCEDN-----ALVEPLWIG 106

Query: 62  FGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                  +E  V+    Y   +        L          +Y+       K     FD 
Sbjct: 107 GPEPTAPVERAVQHRQQYLIDHPRRNDREWLREA------FTYLRGLRATGKI----FDE 156

Query: 121 SSTIARLEKAGLLYKICKNF-----SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + R + +G   +    F         L  + +  R + ++Y+ L     +   +   
Sbjct: 157 HNPVWRFDISGEAAEKLSEFFRRGPGLASLRVEDLDTRFLGDLYQDL----SAHAKKTYA 212

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  V         +P     KE      ++ DPTCG+G FL  A   +       +
Sbjct: 213 LLQTPDFVEEFILDRTFEP---AVKEFGLPDTSVIDPTCGSGHFLLGAFGRLVKLWRKRE 269

Query: 236 IPPIL---------VPHGQELEPETHAVCVAGMLI 261
               +            G ++ P   A+    +L+
Sbjct: 270 PAGDIRVLVERALGQVTGVDINPFAVAIARFRLLV 304


>gi|225621978|ref|YP_002724670.1| adenine specific DNA methyltransferase [Borrelia burgdorferi 94a]
 gi|225546239|gb|ACN92251.1| adenine specific DNA methyltransferase [Borrelia burgdorferi 94a]
          Length = 1086

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 17/171 (9%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK---NFSGIELHPDTVP-DRVMS 156
            S I +     K I +D +F+     LE    +         F+       ++       
Sbjct: 275 FSLIQNIIKLIKDIHKDSEFNYLRWILESIISIVNNIDTKLIFNEFSFTNSSLNLKDPYL 334

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTLYDP 212
             YE  + ++   + +    + TP  +V         +L          +     T+ D 
Sbjct: 335 YFYEDFLAKYDVSLRKAKGVYYTPSPIVSFIVSSLNEMLKKEFKLNHGLANKEKVTVLDF 394

Query: 213 TCGTGGFLTDAMNHV---------ADCGSHHKIPPILVPHGQELEPETHAV 254
             GTG FL + +  +              +  +  +   +G E     +AV
Sbjct: 395 ATGTGTFLLEVIRTIILKEIPEESGRQKDYINLHILKNLYGFEYLMAPYAV 445


>gi|94995094|ref|YP_603192.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes
            MGAS10750]
 gi|94548602|gb|ABF38648.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes
            MGAS10750]
          Length = 2547

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|317490714|ref|ZP_07949177.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
 gi|316910184|gb|EFV31830.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
          Length = 2244

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 69/256 (26%), Gaps = 58/256 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R +          + TP +V                  +      + DP  GTG F    
Sbjct: 499 REYAKARESTLTAYYTPIEVARAV--------WDYLAMAGFSAGNVLDPAAGTGRF---- 546

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                       +  +      E +P +  +           + P   +     + +TL+
Sbjct: 547 -----ADAMPEGMAGLASITMVEPDPVSALIAQ--------HAHPGMAVQCKGYEATTLA 593

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D      F   ++N PFG+                   R   G        ML   +  
Sbjct: 594 DD-----SFDVAVTNVPFGQ--------------FSVYDRRHAGEG------MLVHDYFF 628

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + +S  L    + +     RR L     +     LP   F     
Sbjct: 629 AKALDHVRPGGLVAFITASGTLDKKSSSA-----RRELAARAELVCAARLPDSTFRASAG 683

Query: 401 TNIATYLWILSNRKTE 416
           T + + + +L  R+  
Sbjct: 684 TTVTSDVVVLRKRRER 699


>gi|308063317|gb|ADO05204.1| type II R-M system methyltransferase [Helicobacter pylori Sat464]
          Length = 545

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGTHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++  + K+  N
Sbjct: 177 RIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKEIFKQRFN 229


>gi|320096242|ref|ZP_08027826.1| site-specific DNA-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976823|gb|EFW08582.1| site-specific DNA-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 557

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 17/152 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F  P  VV     L+    DA     P   R + +P+ G G FL      +  
Sbjct: 20  EKQRGAVFTAP-AVVDFMLDLIGYRQDA-----PLASRRILEPSFGGGVFLLRIAERLLS 73

Query: 230 CGSHHKIPPILVP----HGQELEPETH---AVCVAGML-IRRLE-SDPRRDLSKNIQQGS 280
               H               E++  T      C+   +       ++    L   + +G 
Sbjct: 74  SHRSHGGKSAESLEPCVRAVEMDHSTFTATRRCLRETIQEHGFTPAEADLLLDSWLIEGD 133

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            L+  L     F Y + NPP+ ++   D  A+
Sbjct: 134 FLTVPL--DGAFDYVVGNPPYIRQEALDPAAL 163


>gi|14590253|ref|NP_142319.1| hypothetical protein PH0338 [Pyrococcus horikoshii OT3]
 gi|3256729|dbj|BAA29412.1| 329aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 30/141 (21%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R + DP  GTGG L +A                
Sbjct: 167 PPRIARAMVNL------------TKATREVLDPFMGTGGMLIEAGLI------------G 202

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    +     +          T  +++F GK F    ++P
Sbjct: 203 LKVYGLDIREDMVEGAKINLEYYGIRDYVVKVGDA------TKIEEVFPGKTFEAVATDP 256

Query: 300 PFGKKWEKDKDAVEKEHKNGE 320
           P+G       D  E   ++ E
Sbjct: 257 PYGNSTTLPMDRNELYKRSLE 277


>gi|325849331|ref|ZP_08170748.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325480193|gb|EGC83262.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 2547

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLADMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  MKASKIYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|319945387|ref|ZP_08019648.1| type II DNA modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319741380|gb|EFV93806.1| type II DNA modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 1497

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 77/330 (23%), Gaps = 73/330 (22%)

Query: 20  EDLWGDFKHTDFGK--VILPFT-LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           ++L         G+         L+ RL          V   +  +              
Sbjct: 273 DNLRAALDSGQLGRDAYFQQLLRLVYRLIFVFTVEERGVL--HPQWNDPETKAARRAYAE 330

Query: 77  GYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           GY+      +SL               R             A         +S    L+ 
Sbjct: 331 GYALARLRNFSLKRRPRNRHDDQWQAIRIVFRGLDQGEPRLALPALGGLFAASQCKDLDA 390

Query: 130 AGLLY-KICKNFSGIEL------------HPDTVPDRVMSNIYEHLI----------RRF 166
           A L    + +    +                  +    + ++YE L+          R F
Sbjct: 391 ASLDNAHLLEALKDLRWARPPGSDSLVPVDYRNMGPEELGSVYESLLELVPTVDVHARSF 450

Query: 167 -----------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-------T 208
                           +    + TP  +V       L+P       S             
Sbjct: 451 DFVGRTDAASTAGNARKLTGSYYTPDSLVQELIRSALEPVIEQRLASSPAAPEAALLAIR 510

Query: 209 LYDPTCGTGGFLTDAMNHVAD------------------CGSHHKIPPILV--PHGQELE 248
           + DP CG+G FL  A   +A+                      H +  ++    +G +  
Sbjct: 511 VIDPACGSGHFLLAAARRLAERLALLRSVASGYEGAIRPKDYRHALREVVAHCIYGVDRN 570

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           P    +    + +   E     D   +  Q
Sbjct: 571 PMAVELARMALWLEGFEEGRPLDFLDHHLQ 600


>gi|295107188|emb|CBL04731.1| N-6 DNA Methylase. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 914

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 85/283 (30%), Gaps = 39/283 (13%)

Query: 162 LIRRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           L+    S      +  + TP  +  L   L +                 +D  CGTG   
Sbjct: 323 LLEESISSAKRQVSGQYPTPEPLARLMAELGVRNATGHA----------WDCCCGTGTIG 372

Query: 221 -------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA-----GMLIRRLESDP 268
                        V D  +        +    +   +   + ++       L+   + + 
Sbjct: 373 KALWERKVKLTEPVMDDAADRAYRTTWLSDIHDFPLQVATLALSPREHIDSLLLVFQKNA 432

Query: 269 RRDLSKNIQQ---GSTLSKDLFTGKRFHYCLSNPP---FGKKWEKDKDAVEKEHKNGELG 322
                  + +    ST  +      RF    SN P   F  K       ++ E +     
Sbjct: 433 FEVEPGTMVEFIDPSTGEEVGKAVPRFDTIASNLPYVDFNTKEIGRYSQIKDELRQEARA 492

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  K+ D + L+       LE   N GG A ++ S++ LF+    S        L 
Sbjct: 493 ----AGIKLHDRNDLYCYFCLY-LERLLNDGGVACLLTSNTWLFSQAGVS----FFEMLA 543

Query: 383 ENDLIEAI-VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
               IE + V      F +T +   L +L  +K  +    V++
Sbjct: 544 LKYQIEGVFVNGQARWFHKTKVMNALLVLRKKKPGDTPSDVRM 586


>gi|11497405|ref|NP_051524.1| adenine specific DNA methyltransferase [Borrelia burgdorferi B31]
 gi|6382426|gb|AAF07736.1|AE001584_33 adenine specific DNA methyltransferase [Borrelia burgdorferi B31]
          Length = 1098

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 17/171 (9%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK---NFSGIELHPDTVP-DRVMS 156
            S I +     K I +D +F+     LE    +         F+       ++       
Sbjct: 287 FSLIQNIIKLIKDIHKDSEFNYLRWILESIISIVNNIDTKLIFNEFSFTNSSLNLKDPYL 346

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTLYDP 212
             YE  + ++   + +    + TP  +V         +L          +     T+ D 
Sbjct: 347 YFYEDFLAKYDVSLRKAKGVYYTPSPIVSFIVSSLNEMLKKEFKLNHGLANKEKVTVLDF 406

Query: 213 TCGTGGFLTDAMNHV---------ADCGSHHKIPPILVPHGQELEPETHAV 254
             GTG FL + +  +              +  +  +   +G E     +AV
Sbjct: 407 ATGTGTFLLEVIRTIILKEIPEESGRQKDYINLHILKNLYGFEYLMAPYAV 457


>gi|218133895|ref|ZP_03462699.1| hypothetical protein BACPEC_01784 [Bacteroides pectinophilus ATCC
            43243]
 gi|217991270|gb|EEC57276.1| hypothetical protein BACPEC_01784 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1444

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 51/207 (24%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            + +P+ G G F           G           +G EL+  T  +              
Sbjct: 1263 VLEPSMGIGNFF----------GMMPDSMIESRLYGVELDSITGRIAK------------ 1300

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
             +   +   Q     K  +    F   + N PFG+                    +    
Sbjct: 1301 -QLYPQADVQIKGFEKTDYPNDFFDVAIGNVPFGQ--------------------YKVAD 1339

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
             +    + L   +   K       GG  A + S   +          E+RR+L +   + 
Sbjct: 1340 KQYDKNNFLIHDYFFAKTLDKVRPGGVVAFITSKGTMDKASP-----EVRRYLAQRADLL 1394

Query: 389  AIVALPTDLF---FRTNIATYLWILSN 412
              V LP   F     T + + +   S 
Sbjct: 1395 GAVRLPNTAFKANAGTEVTSDILFFSR 1421


>gi|152977006|ref|YP_001376523.1| N-6 DNA methylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025758|gb|ABS23528.1| N-6 DNA methylase [Bacillus cytotoxicus NVH 391-98]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 92/313 (29%), Gaps = 48/313 (15%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            +Y+ +  +    +FE       ++      L  +  K       + +T     +   ++
Sbjct: 25  MTYLEALVETGDNLFEGAILQENLSESTMKRLNREYSK------FNEETYKSEEIRKAFQ 78

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             I + G +    A   MTP  V      L         +       T+ DP  GTG  +
Sbjct: 79  LAILK-GMKEGIQANHEMTPDAVGIFMGYLFHKFMKDQKEI------TVLDPAIGTGNLM 131

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T   N   D         ++   G E++     + +    +++   +             
Sbjct: 132 TTIFNSAQD-------GVVMSGFGVEVDDLLIKLALVNANLQKKAIELFNQDGLASLYID 184

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                          + + P G  +  +  + E + K  E   +                
Sbjct: 185 ----------PVDAVVCDLPVG-YYPNEAGSSEYKLKADEGMSYAH-------------H 220

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
               +       GG    ++ +    + +A    + I+    E   I+ ++ LP  +F  
Sbjct: 221 LFIEQSVKHTKDGGYLFFLVPNFIFESEQAPKLHAFIK----ETCFIQGLLQLPVSMFKN 276

Query: 401 TNIATYLWILSNR 413
              A  +++L  +
Sbjct: 277 EKNAKSIFVLQKK 289


>gi|300813792|ref|ZP_07094099.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300512082|gb|EFK39275.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2547

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQGSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|163849724|ref|YP_001637767.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens PA1]
 gi|163661329|gb|ABY28696.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens PA1]
          Length = 1322

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 87/317 (27%), Gaps = 57/317 (17%)

Query: 33  KVILPFTLLRRLECALE----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
            ++     L   E         T +  R++Y      +   ++ ++ +GY  Y+    +L
Sbjct: 300 HLVYRLIFLFVAEDRDLLHPKQTAAMKRQRYAQGYSVSALRQASIRRSGYDAYSDRWEAL 359

Query: 89  ----STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI- 143
                 L        L      F        E    S+    L KA       K   G+ 
Sbjct: 360 KIVFEALAEGQDELGLPPLAGLFVSQHMDDLEQNALSN--RDLLKAIYRLAWLKTDDGVM 417

Query: 144 ELHPDTVPDRVMSNIYEHLIRR------------FGS------EVSEGAEDFMTPRDVVH 185
            ++   +    + ++YE L+              F           +    + TP  +V 
Sbjct: 418 PVNWRDMQTEELGSVYESLLELTPRISADGREMLFAEGLETRGNARKTTGSYYTPDSLVQ 477

Query: 186 LATALLLDPDDALFKESPG------MIRTLYDPTCGTGGFL------------------T 221
           +     +DP                +   + DP CG+G FL                   
Sbjct: 478 VLLDTTIDPVMDQAVAGAADPVRALLGLRVIDPACGSGHFLLAAARRLAARVARARNDGV 537

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGS 280
            +     D     +       HG +  P    +    + I  +E   P   L  NI  G 
Sbjct: 538 ASAEQYRDA---VRDVVRQCIHGVDRNPMAVDLTKVALWIESIEPGKPLGFLDGNIVCGD 594

Query: 281 TLSKDLFTGKRFHYCLS 297
            L      G++    L 
Sbjct: 595 ALLGTFGYGEKLDAVLD 611


>gi|302380800|ref|ZP_07269264.1| helicase C-terminal domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311400|gb|EFK93417.1| helicase C-terminal domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 2547

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQGSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|227484741|ref|ZP_03915057.1| superfamily II DNA and RNA helicase [Anaerococcus lactolyticus ATCC
            51172]
 gi|227237263|gb|EEI87278.1| superfamily II DNA and RNA helicase [Anaerococcus lactolyticus ATCC
            51172]
          Length = 2547

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 70/253 (27%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G  +          G+    
Sbjct: 840  FYTPREV--------MDGIYRTLTDMGFKTGNILEPSAGVGNLI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  MKASKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLIIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCKFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|126697994|ref|YP_001086891.1| putative helicase [Clostridium difficile 630]
 gi|115249431|emb|CAJ67246.1| putative DNA/RNA helicase Tn1549-like,CTn2-Orf18 [Clostridium
            difficile]
          Length = 2907

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ ++        D       +       + +P+ G G F+          G+    
Sbjct: 1177 FYTPKTII--------DGIYKTLSDMGFKQGNILEPSMGIGNFI----------GNIPDE 1218

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q   L +  F+   F   +
Sbjct: 1219 MNKSKFYGVELDSVSGRIGKL-------------LYPESEVQIKGLEETSFSNNFFDAVI 1265

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++                     +  + L   +   K       GG  
Sbjct: 1266 GNVPFGEYKVNDRE--------------------YNKNNFLIHDYFFAKSIDKVRNGGII 1305

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1306 AFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1360

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1361 DSIRERDE 1368


>gi|148826081|ref|YP_001290834.1| hypothetical protein CGSHiEE_05375 [Haemophilus influenzae PittEE]
 gi|229847125|ref|ZP_04467230.1| HemK [Haemophilus influenzae 7P49H1]
 gi|148716241|gb|ABQ98451.1| HemK [Haemophilus influenzae PittEE]
 gi|229809954|gb|EEP45675.1| HemK [Haemophilus influenzae 7P49H1]
 gi|309973232|gb|ADO96433.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Haemophilus influenzae R2846]
          Length = 292

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 34/216 (15%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR          L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTESLVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L     +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALARSNAERNQLNVQFLQSSWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRA 356
           NPP+          V+ EH +    RF P    +++      L H+        N  G  
Sbjct: 198 NPPYID--------VQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNGV- 248

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
                   L       GE ++R   LEN    +E +
Sbjct: 249 -------LLLEHGWQQGE-KVRSIFLENYWEMVETV 276


>gi|257451606|ref|ZP_05616905.1| hypothetical protein F3_00982 [Fusobacterium sp. 3_1_5R]
 gi|317058174|ref|ZP_07922659.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313683850|gb|EFS20685.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 211

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 22/160 (13%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI--------YEHLIRRFGSE 169
            D +  I +L      YK  +    I L    +    +  +        Y+     F SE
Sbjct: 1   MDINKQIDQLIGVTESYKAPEKLLEIVLDYHRLKKVTLEMLKAHNYKMDYDWFHEYFQSE 60

Query: 170 VSEGAED--FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            ++   +    TP  + +L   L           +      +Y+P CGTGG +    N  
Sbjct: 61  HADRKNNKQDFTPNSIGNLLIRL-----------NRKTEGIIYEPACGTGGIIIQNWNVA 109

Query: 228 ADCGSHHKIPPILVPHG-QELEPETHAVCVAGMLIRRLES 266
            +        P    +  +EL   T    +  + +R + +
Sbjct: 110 REQYGILHFNPNDRLYICEELTDRTIPFLLFNLALRGVNA 149


>gi|119194537|ref|XP_001247872.1| hypothetical protein CIMG_01643 [Coccidioides immitis RS]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG F   A +  A   +           GQ+ E +   +    ML   L
Sbjct: 215 PGKVFYDPFVGTGSFCVAAAHFGA--FTFGSDIDARSFKGQKEEGKPIGLVR-NMLQYGL 271

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           E++     + ++      +  +     F   + +PP+G +
Sbjct: 272 EANYLDAFTSDLTNTPFRNMPI-----FDGIICDPPYGIR 306


>gi|315227037|ref|ZP_07868824.1| helicase [Parascardovia denticolens DSM 10105]
 gi|315119487|gb|EFT82620.1| helicase [Parascardovia denticolens DSM 10105]
          Length = 1673

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 75/264 (28%), Gaps = 29/264 (10%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206
            D+    ++ ++Y     +     S+      TP  +V     +        F        
Sbjct: 891  DSNRQELIKDLYNDFFSKAFKATSQKLGIVYTPMQIVDYMLHVTDRVLKREFGCGLAEEG 950

Query: 207  RTLYDPTCGTGGFL-----------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
              + DP  GTG ++            D + H      H     +L  +   +  E     
Sbjct: 951  VHILDPFAGTGSYMAELISDPELIPVDKLEHKYKYELHSNEILLLAYYIMVVNIEYAYHA 1010

Query: 256  VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKW 305
                           D  +  +   TL   +F G             H  + NPP+    
Sbjct: 1011 RMDGAYEPFTGAVLTDTFQMSEDEDTLDDRMFIGNSERVTEQQRAPIHVIIGNPPYSAGQ 1070

Query: 306  EKDKDAVEKEH----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +   D    EH    +N     +   +  ++  S++     A +              +S
Sbjct: 1071 KSANDNNANEHYPRLENRIRETYSDSVKTVNKNSLMDSYIEAFRWASDRIQNEGVVCFVS 1130

Query: 362  SSPLFNGRAGSGESEIRRWLLEND 385
            ++      AG+G   +RR  +E  
Sbjct: 1131 NAGWLRSEAGAG---VRRCFVEEF 1151


>gi|312139079|ref|YP_004006415.1| hypothetical protein REQ_16570 [Rhodococcus equi 103S]
 gi|311888418|emb|CBH47730.1| conserved hypothetical protein [Rhodococcus equi 103S]
          Length = 1529

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + R      + +  + TP  +           LLD DD        +   + +P  G+G
Sbjct: 508 FVFRLAGRERQQSASYYTPEVLTKFVVSQALEELLDQDDERTTPEQILQLAICEPALGSG 567

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            F  +A+  +A      K   +      +  P       A + + ++
Sbjct: 568 AFAIEAVRQLAAEYLKRKQEDLSELIDADQYPIELQKVKAHIALHQV 614


>gi|218473432|emb|CAV31142.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 1315

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 14  MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAIPRSIREKSE---------LYGVELDS 64

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 65  VTGAIAKQ---LHPNVHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 111

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 112 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 150

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 151 DN-----VLQEIKTNTHFLGGVRLPDTAFKSIAGTRVTTDLLFFQKDQAKN 196


>gi|260205309|ref|ZP_05772800.1| hypothetical protein MtubK8_13497 [Mycobacterium tuberculosis K85]
 gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tuberculosis K85]
 gi|289539134|gb|EFD43712.1| helicase [Mycobacterium tuberculosis K85]
          Length = 1606

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAMMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 VNDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|89100073|ref|ZP_01172942.1| Adenine-specific methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89085163|gb|EAR64295.1| Adenine-specific methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 311

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 36/206 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  GTG  LT  +N         +    +   G +++     +           ++
Sbjct: 102 RLLDPAVGTGNLLTTVIN--------QQEGKSIEAVGSDVDDLLIKLAYIN-------AN 146

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            ++   +   Q S   + LF  +     +S+ P G  +  D  A + E K  E       
Sbjct: 147 LQKHPIQFYNQDSL--EPLFI-ESVDAVISDLPVG-YYPNDIRAQDYELKADEGH----- 197

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                  S    + L   +      GG   +++ +    + +A     +++ ++ +  +I
Sbjct: 198 -------SYAHHLFLEQSMRHVKE-GGYLFLIVPNGLFESEQAD----KLKAYISKTSII 245

Query: 388 EAIVALPTDLFFRTNIATYLWILSNR 413
           + ++ LP  LF   N A  ++IL  +
Sbjct: 246 QGLLQLPETLFKNKNAAKSVFILQKK 271


>gi|294787394|ref|ZP_06752647.1| putative Helicase [Parascardovia denticolens F0305]
 gi|294484750|gb|EFG32385.1| putative Helicase [Parascardovia denticolens F0305]
          Length = 1669

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 75/264 (28%), Gaps = 29/264 (10%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206
            D+    ++ ++Y     +     S+      TP  +V     +        F        
Sbjct: 887  DSNRQELIKDLYNDFFSKAFKATSQKLGIVYTPMQIVDYMLHVTDRVLKREFGCGLAEEG 946

Query: 207  RTLYDPTCGTGGFL-----------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
              + DP  GTG ++            D + H      H     +L  +   +  E     
Sbjct: 947  VHILDPFAGTGSYMAELISDPELIPVDKLEHKYKYELHSNEILLLAYYIMVVNIEYAYHA 1006

Query: 256  VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKW 305
                           D  +  +   TL   +F G             H  + NPP+    
Sbjct: 1007 RMDGAYEPFTGAVLTDTFQMSEDEDTLDDRMFIGNSERVTEQQRAPIHVIIGNPPYSAGQ 1066

Query: 306  EKDKDAVEKEH----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +   D    EH    +N     +   +  ++  S++     A +              +S
Sbjct: 1067 KSANDNNANEHYPRLENRIRETYSDSVKTVNKNSLMDSYIEAFRWASDRIQNEGVVCFVS 1126

Query: 362  SSPLFNGRAGSGESEIRRWLLEND 385
            ++      AG+G   +RR  +E  
Sbjct: 1127 NAGWLRSEAGAG---VRRCFVEEF 1147


>gi|260494189|ref|ZP_05814320.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198335|gb|EEW95851.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 474

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 85/252 (33%), Gaps = 27/252 (10%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD-----AMNH 226
           +      TP ++V+L    +      + K+       + + +CG G FL           
Sbjct: 2   KKNGVVYTPENIVNLLLKEVDYNGKKILKKH------VMENSCGDGAFLIKIVEKYCEEF 55

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +       K+   L  +   +E +   V      +  + S       K            
Sbjct: 56  LLTNSDIDKLVLELEKYIHGIEIDKIEVEKTKKNLDNIISKFTPKKVKWDINQGNSLLIK 115

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +  Y + NPP+ +  + ++D +    K     +FG     ++D  + F     N L
Sbjct: 116 KYDNKMDYVIGNPPYIRIHDLNEDNIAI--KKLNFSKFG-----MTDLFIAFFEIGINML 168

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTNIAT 405
               +  G+   +  +S  F  +AGS   E R +++E  ++  I+ L     F      T
Sbjct: 169 ----SKNGKLVYITPNSF-FTSKAGS---EFRNYIIEKKILTKILNLKHYKAFKNITTYT 220

Query: 406 YLWILSNRKTEE 417
            + +L  +    
Sbjct: 221 TITVLDKKNKNN 232


>gi|32141309|ref|NP_733709.1| hypothetical protein SCO6627 [Streptomyces coelicolor A3(2)]
 gi|24413913|emb|CAD55384.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 1210

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 91/313 (29%), Gaps = 34/313 (10%)

Query: 35  ILPFTLLRRLECAL---EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS-EYSLST 90
           +L    +R  E      EP  +           +  D+  +V+      Y      + + 
Sbjct: 69  VLGTVFVRFCEDNRLIPEPYVTGPDNYRRDLAETRYDV--YVEADDDPTYRGWLRRAFAE 126

Query: 91  LGSTNTRNNLESY----IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           LG       L       +     +     E  +F     R E+  L++      S     
Sbjct: 127 LGDGQAGRLLFDSDHNPLYQIPLSHDGARELVEFWRQ--RDEEGALVHDFTDPLSA--DG 182

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +    R + ++Y+ L         +      TP  V        ++P     +E     
Sbjct: 183 TEGWGTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMNP---AVREFGYEE 235

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCVA 257
             + DPTCG+G F+  A   +   G  ++    +           HG ++ P   A+   
Sbjct: 236 LKMIDPTCGSGHFVLGAFRRLVRLGGENQPGKDVHQRVRAALDSVHGVDINPFAVAIARF 295

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L+  + +   R L     + S     +          S    G  + +  D +  E  
Sbjct: 296 RLLVAAMAASGVRTLD----EASKYEWPVHLAVGDSLIKSGSQQGSLFGESDDDLTDELA 351

Query: 318 NGELGRFGPGLPK 330
             +      G   
Sbjct: 352 EFKYATEDVGEHP 364


>gi|229829842|ref|ZP_04455911.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
 gi|229791140|gb|EEP27254.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
          Length = 2869

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 76/261 (29%), Gaps = 59/261 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+        D       +       + +P+ G G F+   
Sbjct: 1184 SEYEAARESTLTSFYTPKTVI--------DGVYKTLLDMGFKQGNILEPSMGIGNFI--- 1232

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G+          +G EL+  +  +                   ++  Q   L 
Sbjct: 1233 -------GNIPDEMNKSKFYGVELDSVSGRIGKL-------------LYPESDIQIKGLE 1272

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D++                     +  + L   +  
Sbjct: 1273 ETSFSNNFFDAIIGNVPFGEYKVNDRE--------------------YNKNNFLIHDYFF 1312

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + SS  +        +  +RR+L         + LP D F     
Sbjct: 1313 AKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAG 1367

Query: 401  TNIATYLWILSNRKTEERRGK 421
            T + + +  L  R +   R +
Sbjct: 1368 TEVTSDIIFLKKRDSIRERDE 1388


>gi|225620239|ref|YP_002721496.1| hypothetical protein BHWA1_01313 [Brachyspira hyodysenteriae WA1]
 gi|225215058|gb|ACN83792.1| hypothetical protein BHWA1_01313 [Brachyspira hyodysenteriae WA1]
          Length = 428

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 15/152 (9%)

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L+ D       N        K++F G  F   + NPP+ +  E D      E +      
Sbjct: 2   LDFDEETQYKINCFDWEDEFKNIFKGGGFDVVIGNPPYVRNRELD------EKQKMYFNS 55

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     K +DG          K             + S+             ++R ++L+
Sbjct: 56  F----YKSADGQYDLYQLFYEKGINILKEKSILGYITSNKFTIASYG----KKLREYILD 107

Query: 384 NDLIEAIVALPT-DLFFRTNIATYLWILSNRK 414
           N +I+ I+ +   ++F + +   Y+ IL   K
Sbjct: 108 NCIIKQIIDVSMINVFKKVSTYPYIIILEKNK 139


>gi|266624266|ref|ZP_06117201.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
 gi|288863897|gb|EFC96195.1| superfamily II DNA and RNA helicase [Clostridium hathewayi DSM
           13479]
          Length = 1792

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 74/262 (28%), Gaps = 65/262 (24%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  V  +    L        ++      ++ +P+ G G F +     + +       
Sbjct: 582 FYTPPVVAKVIYKAL--------QQFGFEGGSILEPSMGIGNFYSVLPEDMRNS------ 627

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G EL+  +  +               +       Q     K  F   +F   +
Sbjct: 628 ----QLYGVELDSISGRIAK-------------QLHPHATIQVKGFEKTKFEKNKFDVVV 670

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            N PFG                     F P   K          +   K       GG  
Sbjct: 671 GNVPFGA-----------------YKVFDPEYKKYG---FRIHDYFLAKSIDLVRPGGMI 710

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A+V +   +         S IR+++ E       V LP   F       + + +  L   
Sbjct: 711 AVVTTKFTM-----DKANSIIRKYIAERADFVGAVRLPGIAFKKDAGAEVTSDIIFLQK- 764

Query: 414 KTEERRGKVQLINATDLWTSIR 435
                +G++   N ++ W +I 
Sbjct: 765 -----KGRLLTANTSEDWMNIT 781


>gi|145343474|gb|ABP65247.1| HP0478-like protein [Helicobacter pylori]
          Length = 538

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLEKLGSCYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDVSQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQQFN 229


>gi|168494635|ref|ZP_02718778.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC3059-06]
 gi|183575466|gb|EDT95994.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC3059-06]
          Length = 317

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGETEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGFKYLK----SDGYAIFLAPSDLLTSPQSD----LLKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|327474192|gb|EGF19600.1| SNF2 family protein [Streptococcus sanguinis SK408]
          Length = 2077

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 108/389 (27%), Gaps = 78/389 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + D             +G EL+ 
Sbjct: 493 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRDKSE---------LYGVELDS 543

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 544 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 590

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 591 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 629

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERR------- 419
                  + + +  N      V LP   F     T + T L      + +          
Sbjct: 630 DN-----VLQEIKTNTHFLGGVRLPDTAFKTIAGTRVTTDLLFFQKDQAKNLNEEELVFS 684

Query: 420 GKVQLINATDLWTSIRNEGKKRR-IINDDQRRQI---------------LDIYVSRENGK 463
           G +       +W +   +GK    ++ + + R                  DI  + EN +
Sbjct: 685 GSIPFEEDKRVWINPYFDGKYNTQVLGEYEVRNFNGGTLNVKGESETLSTDIMKAFENVE 744

Query: 464 FSRMLDYR----TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             + +D       F    +    P R+   L           I +R    + +S  +D +
Sbjct: 745 APKQIDNSLKAPVFIQEEVDNSIPSRIREDLALYSFGYEGNQIYYRDTHGIRKSSKVDEI 804

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTL 548
              + +   +   +S + E       +  
Sbjct: 805 SYYVDEKGDFKAWDSSLSEHKIDRFVQLH 833


>gi|320195302|gb|EFW69930.1| Type I restriction-modification system, DNA-methyltransferase
          subunit M [Escherichia coli WV_060327]
          Length = 58

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
             +   A    G  + +++  V+L   L + +    E  R
Sbjct: 16 EETLCDTANQFRGSVESSEYKHVVLSLVLQKLISDKFEARR 56


>gi|163784225|ref|ZP_02179151.1| BseRI endonuclease, putative [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880506|gb|EDP74084.1| BseRI endonuclease, putative [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1107

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 21/208 (10%)

Query: 62  FGGSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNA--KAIFED 117
           +G + I  E F++    +      S  +L  +     R+ ++     + +N       E 
Sbjct: 182 YGENVISDEMFIRHTYLNILIKIISYNTLKKIFGIQARDFIQVLNGEYFENLSIYNYIEK 241

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     +E    +    +     +   + V + V+  IYE ++     +      ++
Sbjct: 242 DFFSWIFFDIETLNDVSTGLETVIEEKFSFENVSEDVLKEIYEDIV---IQKERHEIGEY 298

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSH 233
            T RD   LA  ++LD  + + K        + DP CG+G FL   ++          S 
Sbjct: 299 YT-RD--WLAEKVILDTVNEIDK-------KVLDPACGSGTFLFKTIHQKKKRLNLEDSQ 348

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLI 261
                +    G ++ P +  +     LI
Sbjct: 349 LLKHILNTVIGFDINPISIIIARTNYLI 376


>gi|85085331|ref|XP_957484.1| hypothetical protein NCU04407 [Neurospora crassa OR74A]
 gi|28918576|gb|EAA28248.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|40882214|emb|CAF06039.1| conserved hypothetical protein [Neurospora crassa]
          Length = 469

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 23/179 (12%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHKIPPILVPHGQ-ELEPETHAVCV 256
             + +YDP  GTG F        A       D  S           G  E    T  +  
Sbjct: 210 PGKLIYDPFVGTGSFPIACAQFGALTFGSDIDGRSIRGDEKKRTLRGNFEQYGLTQNLG- 268

Query: 257 AGMLIRRLESDPRRDLSKNIQQGST-----LSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
            GM    L + P R  +       +        D  +G+ F   + +PP+G +       
Sbjct: 269 -GMFTADLTNTPIRKSALGTSASPSSPAGQPKSDGVSGRIFDAVVCDPPYGVREGLKVLG 327

Query: 312 VEKEHK------NGELGRFGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           V+   K       G      P           +L L  +          GGR +  + +
Sbjct: 328 VKDPEKCPWVIPKGMEMYKDPDFIPPRKPYSFLLMLDDILQFSAQTLVDGGRLSFWMPT 386


>gi|331002100|ref|ZP_08325619.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330411194|gb|EGG90610.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2661

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 72/236 (30%), Gaps = 51/236 (21%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D   +   +       + +P+ G G F+          G+          +G EL+
Sbjct: 945  KVVIDSIYSALSDMGFKSGNILEPSMGIGNFV----------GNLSDEMKSSKFYGVELD 994

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +                   ++  Q   L +  F+   F   + N PFG+    D
Sbjct: 995  SVSGRIGKL-------------LYPESDIQIKGLEETSFSNNFFDVAIGNVPFGEYKVND 1041

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            ++                     +  + L   +   K       GG  A + SS  +   
Sbjct: 1042 RE--------------------YNKNNFLIHDYFFAKSIDKVRNGGIIAFITSSGTM--- 1078

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
                 +  +RR+L         + LP D F     T + + +  L  R +   R +
Sbjct: 1079 --DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDSIRERDE 1132


>gi|38637975|ref|NP_942949.1| helicase superfamily protein II [Ralstonia eutropha H16]
 gi|32527313|gb|AAP86063.1| putative helicase superfamily II [Ralstonia eutropha H16]
          Length = 1037

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 67/247 (27%), Gaps = 47/247 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP  +  L          A+    P    ++ D + G+   L       AD G+H  
Sbjct: 38  QFFTPDAIARLM-------WGAVTHWQPNRKVSILDNSVGSARLL-----QFADPGTH-- 83

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G ++   T       +     +   R              +++    RF   
Sbjct: 84  -----SLYGVDVHQPTIEAVQHAIEAAGFDGSFRH----------AGMEEIHP-TRFDVA 127

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELPPNGGG 354
           L NPPF    E            G  G     L  +      L    +   L        
Sbjct: 128 LINPPFSIHLESPHLKPYDCTTWGRFGANTSALSHEYGLYQALDAAQIVVALLPTTFVDK 187

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--RTNIATYLWILSN 412
            A +V+     F   A       RR       +  +  LPT  F      + T + + + 
Sbjct: 188 FAGLVIGHGEPFADAA-------RR-------VVGVFDLPTSAFREEGAEVRTSIAVFAR 233

Query: 413 RKTEERR 419
            +   R 
Sbjct: 234 YRMRARD 240


>gi|328949537|ref|YP_004366873.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328449861|gb|AEB15576.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2135

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 48/239 (20%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR++V             +         T+ +P+ GTG F            +  
Sbjct: 74  NEFYTPRNLV--------AKVWGIADHYAPNAVTVLEPSSGTGRF------------ADG 113

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +       H  E +  +  +     ++             +   +     K  +   ++ 
Sbjct: 114 RPKNNFTMH--EKDEVSARI---NKILHPNANIIEGAFQKQFFDENERFKKIGYQLPKYD 168

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             + NPP+G   +K K   E      + GR+                 +   LE   +  
Sbjct: 169 LVIGNPPYGTYNDKYKGLGE----GKDFGRY-------------EEYFIQKGLESLKDEN 211

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
                V+ S  L    A   ++ I    L  +LI+A   LP   F  T + T + +L  
Sbjct: 212 SLLVFVVPSGFL-RTVADKPKTAI---ALTGELIDA-YRLPEGTFPTTQVGTDIIVLKK 265


>gi|328947854|ref|YP_004365191.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Treponema succinifaciens DSM 2489]
 gi|328448178|gb|AEB13894.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Treponema succinifaciens DSM 2489]
          Length = 310

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 4/145 (2%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-ESPGMIRTLYDPTCGT 216
            Y   I+ F     E  ++ + P+    L     ++  +  F   S   I ++ D   G+
Sbjct: 69  AYITGIKEFFGSDFEVDKNVLIPKPDTELLVENAVNFIEEKFHASSDCKILSVCDMCSGS 128

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +  + +     K     +    ++  +T  +     L  RL S+   + +  +
Sbjct: 129 GCVGISILKFIEEKKIIPKSLLPKIIFA-DISKKTLDIAKKNSL--RLLSEFAFEKTVFV 185

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPF 301
           Q     +        F   +SNPP+
Sbjct: 186 QSNLFENLGQSRNGLFDVIVSNPPY 210


>gi|254173486|ref|ZP_04880158.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
 gi|214032178|gb|EEB73008.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
          Length = 333

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 26/142 (18%)

Query: 163 IRRFGSEVSEGAEDFMTP--RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +R F  +  E  +    P  R +       L               + L DP  G GG L
Sbjct: 141 LRFFDPKDFERRKAHHRPFFRPIS------LHPRVSRALVNLTKARKELLDPMMGAGGIL 194

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +A                L  +G +++PE        +    ++    R          
Sbjct: 195 IEAG------------LLGLKVYGVDIKPEMVEGAEMNLRHYGVKDFELRLGDA------ 236

Query: 281 TLSKDLFTGKRFHYCLSNPPFG 302
           T  ++LF GK F    ++PP+G
Sbjct: 237 TRLEELFPGKEFEAVATDPPYG 258


>gi|241664253|ref|YP_002982613.1| type II DNA modification enzyme [Ralstonia pickettii 12D]
 gi|240866280|gb|ACS63941.1| putative type II DNA modification enzyme [Ralstonia pickettii 12D]
          Length = 1306

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 47/179 (26%)

Query: 149 TVPDRVMSNIYEHLI------------RRFG-----------SEVSEGAEDFMTPRDVVH 185
            +    + ++YE L+            R FG               +    + TP  +V 
Sbjct: 417 DMDSEELGSVYESLLELVPVVTLGGGARIFGFVGDDEEGSTKGNARKLTGSYYTPDSLVQ 476

Query: 186 -LATALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
            L  + L        K +P       +  ++ DP CG+G FL  A   +A+  +      
Sbjct: 477 ELIKSALEPVIAQTLKANPQEPVKALLGLSVCDPACGSGHFLLAAARRIAEEVAQLNAAD 536

Query: 239 IL----------------VPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGS 280
                               +G +  P    +    + +     D P   L  +++ G 
Sbjct: 537 GNPLPDDYRHALRDVVAHCIYGVDKNPMAVELARTALWLEAYTPDRPLTFLDHHLRCGD 595


>gi|146283764|ref|YP_001173917.1| type II restriction enzyme, methylase subunit [Pseudomonas stutzeri
           A1501]
 gi|145571969|gb|ABP81075.1| type II restriction enzyme, methylase subunit [Pseudomonas stutzeri
           A1501]
          Length = 1635

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 27/78 (34%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 550 FIYRLAGRAREKSASYYTPEVLTQCLVEHALKEILPGKTADEILQLTICEPAMGSAAFLN 609

Query: 222 DAMNHVADCGSHHKIPPI 239
           +A+N +A+     K   +
Sbjct: 610 EAVNQLAEAYLQAKQKEL 627


>gi|3806109|gb|AAC69195.1| HsdM-like protein [Staphylococcus aureus]
          Length = 41

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 1  MTEFT-GSAASLANFIWKNAEDLWGDFKHTDF 31
          +TE      A L   +W  A DL G+   ++F
Sbjct: 10 ITEKQRQQQAELHKKLWSIANDLRGNMDASEF 41


>gi|157155468|ref|YP_001464366.1| hypothetical protein EcE24377A_3365 [Escherichia coli E24377A]
 gi|157077498|gb|ABV17206.1| conserved hypothetical protein [Escherichia coli E24377A]
          Length = 230

 Score = 42.1 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L              F TP  V  +   + L    ALF+  P +  TL +P
Sbjct: 87  DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFENKPFI--TLSEP 139

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G  +     +     +++P    +    + +  +  +     
Sbjct: 140 ACGAGSMILAMADTLNRSG--YPAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 197

Query: 273 SKNIQQGSTLSKDLF 287
           S   ++   L     
Sbjct: 198 SLCNERRRVLLTPGH 212


>gi|325846329|ref|ZP_08169319.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325481593|gb|EGC84632.1| helicase C-terminal domain protein [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 2547

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IRSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|284108607|ref|ZP_06386425.1| type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829887|gb|EFC34176.1| type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 436

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 104/295 (35%), Gaps = 50/295 (16%)

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY----RRI 478
           +I+A+  +    N+ +    +      +I+D++  + E  ++SRM+             +
Sbjct: 1   MIDASKGFLKDGNKNR----LRAQDLHRIVDVFNRQTEVPRYSRMVPVAEIANPANDYNL 56

Query: 479 KVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLD--ILKPMMQQIYPYGWAES- 534
            + R +  S   D   L A L   I  R +  L   + +   + + +       G++E+ 
Sbjct: 57  NIPRYIDSSEPEDLHDLDAHLNGGIPDRDIDALDNYWTVFPSLRQALFAGNGRAGYSEAR 116

Query: 535 ----FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW--IPDTNLT 588
                VK +I S+       +   + +  +  A        +  T+  G    + +  LT
Sbjct: 117 VETPQVKAAILSHGEFQSYEERVATVLDGWCQAHAPVLKGLEIDTNPKGIIRALAEDLLT 176

Query: 589 EYENVPYLESIQDY----------FVREVSPHVPDAY------------IDKIFIDEKDK 626
            + ++P L+    Y             +V   V D +             DK F +  D 
Sbjct: 177 RFADLPLLDPYDVYQRLMDYWDEVMQDDVYLIVTDGWGEAAKPRGIVEDKDKKFKETPDL 236

Query: 627 EIGRVGYE---IN----FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            I R  Y+   I       R+F        ++++ A+ +    ++   +EE   E
Sbjct: 237 TIKRRKYKMDLIPPGLIVARYF--ADEQVAIEELQAKQEDATRELEEFIEEYTGE 289


>gi|257054590|ref|YP_003132422.1| hypothetical protein Svir_05210 [Saccharomonospora viridis DSM
           43017]
 gi|256584462|gb|ACU95595.1| hypothetical protein Svir_05210 [Saccharomonospora viridis DSM
           43017]
          Length = 1209

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 53/428 (12%), Positives = 113/428 (26%), Gaps = 80/428 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           +L    +R  E         ++  ++A  G  +        A +  +         + + 
Sbjct: 71  VLGTVFVRFCEDN-----GLIQWPFIAGPGERLVDAEERHEAYFREHPQDNDRDWIVAAF 125

Query: 95  NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           N  +      A   D       +    F +    L+         +     +        
Sbjct: 126 NHLSEAHPTAAGLFDARFNPLWEITPSFEAATELLQFWRRRGDDGEI--RYDFTDPEWDT 183

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           R + ++Y+ L         +      TP  V      L L+P     +E         DP
Sbjct: 184 RFLGDLYQDL----SEHARKTYALLQTPEFVEEFILDLTLEP---AVEEFGLADLRTIDP 236

Query: 213 TCGTGGFLTDAMNHVADCGSHHK---------IPPILVPHGQELEPETHAVCVAGM---- 259
            CG+G FL      +       +            +   HG +  P   ++    M    
Sbjct: 237 ACGSGHFLLGLFRRILTKWREVEPGTDQWELIQRTLASVHGCDKNPFAVSIARFRMLVAV 296

Query: 260 ------------------------LIRRLESDPRRDLSKNIQQGSTL----------SKD 285
                                   L+    +   +     + +  T           S D
Sbjct: 297 LREANAMRLDQAPQFPINIAVGDSLMHGRGAPGIQGELFALDEPHTYTTEDVNEYVRSCD 356

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           L     +H  + NPP+    +K ++   ++  +        G   +S      L  LA +
Sbjct: 357 LLGKGSYHVVVGNPPYITVKDKQENKNYRDRYDA-----CSGTYALSVPFAQRLFQLAIR 411

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND----LIEAIVALPTDLFFRT 401
            +      G    + ++S +        + E  + L+E       +  ++          
Sbjct: 412 RDGSERDAGYVGQITANSFM--------KREFGKKLIEQFFKTVNLTHVIDTSGAYIPGH 463

Query: 402 NIATYLWI 409
              T + +
Sbjct: 464 GTPTVILV 471


>gi|220934410|ref|YP_002513309.1| modification methylase, HemK family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995720|gb|ACL72322.1| modification methylase, HemK family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 303

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 25/143 (17%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LIR   F        E  + PR  +     L+           P  +  + D   G+G 
Sbjct: 89  YLIREAWFAGLSFYVDERVLVPRSPI---AELIEQGFAPWI--DPERVERVLDLCTGSGC 143

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 +   D                ++ P+  AV    +    +    R   S   + 
Sbjct: 144 IGIACAHAFPDARVDLS----------DISPDALAVARENIRRHGVADRVRAIRSDLFE- 192

Query: 279 GSTLSKDLFTGKRFHYCLSNPPF 301
                     G+R+   +SNPP+
Sbjct: 193 -------GLAGERYDLIVSNPPY 208


>gi|321156899|emb|CBW38888.1| putative conjugative transposon DNA recombination protein
           [Streptococcus pneumoniae]
          Length = 2081

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 497 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIREKSE---------LYGVELDS 547

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG       
Sbjct: 548 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFG------- 587

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                  +  +   + P          +   +           GG+ +I+ S   +    
Sbjct: 588 -----NFRIADKNYYKP---------YMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 633

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 634 DN-----VLQEIKSNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 679


>gi|257455842|ref|ZP_05621065.1| type I restriction enzyme M protein [Enhydrobacter aerosaccus SK60]
 gi|257446756|gb|EEV21776.1| type I restriction enzyme M protein [Enhydrobacter aerosaccus SK60]
          Length = 169

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 18/182 (9%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           TG   +  + IW       G     +  + +     +RRL+         V+EK      
Sbjct: 3   TGDIKNKIDQIWNAFWS-GGISNPLEVMEQMTYLLFIRRLDEL-----QLVKEKKANRLK 56

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSDNAKAIFEDFDFS 121
             I    F +   +  +  S ++     S       N +  +I +        +      
Sbjct: 57  QPIVNPIFDESQAHLRW--SRFTTLGDASQLYNVVANEVFPFIKNLGAEDDTTYSH-HMK 113

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                +    LL K+    + + +           +IYE+++ +  S        F TPR
Sbjct: 114 DARFTIPTPALLTKVVDLVADVPMD----DKDTKGDIYEYMLGKIASAG--QNGQFRTPR 167

Query: 182 DV 183
            +
Sbjct: 168 HI 169


>gi|258513251|ref|YP_003189507.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256635154|dbj|BAI01128.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-01]
 gi|256638209|dbj|BAI04176.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-03]
 gi|256641263|dbj|BAI07223.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-07]
 gi|256644318|dbj|BAI10271.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-22]
 gi|256647373|dbj|BAI13319.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-26]
 gi|256650426|dbj|BAI16365.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-32]
 gi|256653417|dbj|BAI19349.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656470|dbj|BAI22395.1| DNA methylase/helicase SNF2 [Acetobacter pasteurianus IFO 3283-12]
          Length = 1708

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 50/228 (21%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L++     +         ++ +P CGTG     A           K+   +   G E +
Sbjct: 152 ELIVHSMWDMALRMGFRGGSVLEPGCGTG-LFIAA--------RPEKLEGKIAFTGIEND 202

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P +  +              +   ++ I+        L  G  +   + NPPF  +    
Sbjct: 203 PISARIAR------------KLYPNQWIRSEDFTRAQLPQG--YDLAIGNPPFSNRTVHG 248

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +D +EK   +                          +       GG A  V S   L   
Sbjct: 249 RDGLEKLGLSLHD-------------------FFIARSIDALRPGGIALFVTSRYTLDKT 289

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
              +     RR + E+  +   V LP         T++   +     R
Sbjct: 290 DPNA-----RRIIGESADLLGAVRLPEGAMRDDAGTDVVVDVLAFRKR 332


>gi|194396911|ref|YP_002037980.1| Tn5253 SNF2-related: helicase [Streptococcus pneumoniae G54]
 gi|194356578|gb|ACF55026.1| Tn5253 SNF2-related: helicase [Streptococcus pneumoniae G54]
          Length = 2074

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 490 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIREKSE---------LYGVELDS 540

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 541 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 587

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 588 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 626

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 627 DN-----VLQEIKSNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 672


>gi|49420978|gb|AAT65832.1| M.EsaWC4I [uncultured bacterium]
          Length = 421

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPANAAPRSLGRVETPPEVVDFMVSLAEAPR----------GGKVLEPACAHGPFL- 54

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +             +G E++P                     DL    +    
Sbjct: 55  ---RAFREAHGTA-----YRFYGVEIDP------------------KALDLPPWAEGILA 88

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                   + F   L NPP+G   E  K  +       +L +      K   G       
Sbjct: 89  DFLLWEPREAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK---GKYNLYGA 145

Query: 342 LANKLELPPNGGGRAAIVLS 361
              K       GG    V+ 
Sbjct: 146 FLEKAVRLLKPGGVLVFVVP 165


>gi|71275695|ref|ZP_00651980.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gi|71897849|ref|ZP_00680075.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gi|71163586|gb|EAO13303.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gi|71732404|gb|EAO34458.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
          Length = 170

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T +   +   +W  A  + G+     F   +LP   L+RL    +   + + EKY  +  
Sbjct: 90  TPTTKPMEQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFDDEITRLAEKYGDYAT 149

Query: 65  SNIDLESFVKVAGYSFYNTSEYS 87
           +    ES   +    FY   +  
Sbjct: 150 ALEIAESDHSLLR--FYLPPQAR 170


>gi|323126877|gb|ADX24174.1| type II restriction enzyme-methylase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 982

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 106/353 (30%), Gaps = 72/353 (20%)

Query: 95  NTRNNLESYIASFSDNAKAIFE----DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           NT+N  ES++       K  ++    D D  +     +                   D +
Sbjct: 263 NTQNFWESFVRKTVSEFKLKYDGALFDIDLPNLALTNDVFVDFVSSIT--GNSPYRFDVI 320

Query: 151 PDRVMSNIYEHLIRR----------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
               ++ IY+  + R            ++         TP ++        +   D +  
Sbjct: 321 KPSFIAEIYDQFLGRQLFVYDNKLQISNKPLSPDGAVPTPYEMSSYICKQTIQ-LDHISN 379

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEP 249
            +  +   + DP  G+G FL   +  + +          +             +G +++P
Sbjct: 380 INDLLKLKILDPCVGSGSFLLATLELLVEKYKTITNSERIALSDVKAIIKNCLYGVDIDP 439

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSK---------NIQQGSTLSKD--------------- 285
               V    + ++ + S+                N + G+T+ ++               
Sbjct: 440 TALEVLKMTLSLKIVMSNFILPEPFSKILSAIDNNFKYGNTIVQEDALMLASEEFEQFPT 499

Query: 286 --------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                   +F    F Y ++NPP+ +     K    K        +    L    D SM 
Sbjct: 500 KFEELFPIIFKEGGFDYVVTNPPYVEP----KHFKRKWPLTHRYLKNKYNLSDKVDISMF 555

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           F++ + + L+      G+  +V+               ++R +L    ++  I
Sbjct: 556 FVLRINDLLK----SDGKYGLVIQKRFF----NTEYGRKVRNYLTTQGVLHTI 600


>gi|218677922|ref|ZP_03525819.1| helicase-like protein [Rhizobium etli CIAT 894]
          Length = 326

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 27/134 (20%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   + NPPF                     R  P    I         +   K     
Sbjct: 4   QFDLAIGNPPFS----------------DRTVRSDPAFRSIG---FRLHDYFIAKSIDRL 44

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYL 407
             GG AA V SS  +    A +     R ++     +   + LP   F     T++   +
Sbjct: 45  KPGGLAAFVTSSGTMDKVDARA-----REYIAGMADLIGAIRLPEGSFRADAGTDVVIDI 99

Query: 408 WILSNRKTEERRGK 421
                R+ +E  G 
Sbjct: 100 LFFQKRRADETAGN 113


>gi|78046293|ref|YP_362468.1| hypothetical protein XCV0737 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034723|emb|CAJ22368.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 354

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 23/109 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                ++DP CG G  L  A     +             HG E++P    +    +    
Sbjct: 51  RPGEQVFDPFCGFGSTLLAAALEGRNA------------HGMEIDPARAQLARMRLARHA 98

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP-FGKKWEKDKDA 311
           + +                  D         CL+N P FG  W  D   
Sbjct: 99  VAAPVVVG----------SLADTAPAGPIDLCLTNVPYFGCHWHGDVLP 137


>gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycobacterium bovis AF2122/97]
 gi|31618798|emb|CAD96902.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
          Length = 1606

 Score = 42.1 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|225032080|gb|ACN79573.1| ApyPI [synthetic construct]
          Length = 948

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 78/279 (27%), Gaps = 65/279 (23%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM----------TPRDVVHLAT- 188
            +  +     +   V  ++++ +  +       G  +             P  +  L   
Sbjct: 315 LNACDFDWSKIDVSVFGSLFQLVKSKEA---RRGDGEHYTSKTNILKTIGPLFLDELRAQ 371

Query: 189 --ALLLDPDDALFKESPGMI----RTLYDPTCGTGGFLTDAMNHVADCGSH--------- 233
              L+ +P   + K              DP CG G FL  A   +    +          
Sbjct: 372 ADKLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQRR 431

Query: 234 -----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR------------- 269
                       +   I   +G EL      +    M +   +++               
Sbjct: 432 GETGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRLP 491

Query: 270 RDLSKNIQQGSTLSKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             ++ +I  G+ L+ D            +   NPPF  +  + K  +E+           
Sbjct: 492 ITITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKN-- 549

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                IS    +   H+   L+L     GR A V ++S 
Sbjct: 550 -----ISRLDYVTCWHI-KSLDLFSTRNGRFAFVTTNSI 582


>gi|312902762|ref|ZP_07761966.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
 gi|310633816|gb|EFQ17099.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
          Length = 335

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPIGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILIVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRENGKFSRM 467
           +   E  K S +
Sbjct: 323 FKQFEAWKSSNL 334


>gi|254725013|ref|ZP_05186796.1| hypothetical protein BantA1_21539 [Bacillus anthracis str. A1055]
          Length = 328

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 83/273 (30%), Gaps = 46/273 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQNEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +  +       +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTVFNSAKEGLT-------MSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E + K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVISDLPIG-YYPNEIGASEYKLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           E   I+ ++ LP  +F     A  +++L  +  
Sbjct: 259 ETGFIQGLLQLPVSMFKNEKNAKSIFVLQKKGP 291


>gi|219557991|ref|ZP_03537067.1| helicase [Mycobacterium tuberculosis T17]
 gi|260201132|ref|ZP_05768623.1| helicase [Mycobacterium tuberculosis T46]
 gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tuberculosis T46]
 gi|289570133|ref|ZP_06450360.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289416440|gb|EFD13680.1| helicase [Mycobacterium tuberculosis T46]
 gi|289543887|gb|EFD47535.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 1606

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|206601478|gb|EDZ37963.1| superfamily II DNA/RNA helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1309

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 64/303 (21%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG--------YSFYNTSEY 86
           +  F  L  +E       S VR++ +        L     ++            + + + 
Sbjct: 299 VYRFLFLLTVEDRNLLHESRVRKEAIDIYQDGYSLSRLRILSRKRRAYDRFPDLWKSLQI 358

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFE--DFDFSSTIARLEKAGLLYKICKNFSGIE 144
               L S  +   L      FS++  ++ E  + D ++ +    +    ++     + I 
Sbjct: 359 VFGGLRSGASDIGLAPLGGLFSEDQCSLLETSEID-NAHLLSAIREIAYFETGDTLARIN 417

Query: 145 LHPDTVPDRVMSNIYEHLIR-----------------RFGSEVSEGA-----------ED 176
                +    + ++YE L+                   FG E                  
Sbjct: 418 YR--DMDTEELGSVYESLLELHPVIRFDRTPWTFGFVGFGDESGNKGASSSGSQRKSTGS 475

Query: 177 FMTPRDVVH-LATALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMNHVA- 228
           + TP  +V  L  + L        ++ P   R       + DP+CG+G FL  A   +A 
Sbjct: 476 YYTPDSLVRELIGSALEPVIKKTLEDHPDYPRKALLALRIIDPSCGSGHFLLSAARRLAL 535

Query: 229 -------------DCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
                        +    H +  ++     G ++ P    +C   + +  +E        
Sbjct: 536 EVARIDADSETPDEATRRHALREVVQHTIFGVDINPLAVELCRTALWLETVEPGKPLGFL 595

Query: 274 KNI 276
            N 
Sbjct: 596 DNH 598


>gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224990404|ref|YP_002645091.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|121493557|emb|CAL72031.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224773517|dbj|BAH26323.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
            172]
          Length = 1606

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|313888230|ref|ZP_07821902.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845761|gb|EFR33150.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 2547

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IRSSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|108562880|ref|YP_627196.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPAG1]
 gi|107836653|gb|ABF84522.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPAG1]
          Length = 545

 Score = 42.1 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE   +   +        + TP          +++    L K+       
Sbjct: 88  SSDLEKLGSHYE---KELSNTTRNLEGIYYTP--------NRIVEQRFTLPKDFDASQAI 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   +   KD  + K   +F    +NPP+GKK+ +D+    K+  N
Sbjct: 177 RIKERYHLDCPNIAQKDFLSLKHTPQFDCIFTNPPWGKKYNQDQKENFKQQFN 229


>gi|313667089|gb|ADR72988.1| RM.BsmFI [Geobacillus stearothermophilus]
          Length = 879

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 59/233 (25%), Gaps = 14/233 (6%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L      +          + DP  G+G  L          G     P  L  + +E
Sbjct: 297 LANILAILSKYVLGRELNENEIICDPAAGSGNLLAAI-----RAGFDTINPKQLWANDKE 351

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
                      G++   + S     L            D          L NPP+     
Sbjct: 352 QLFLELLSIRLGLMFPLIVSPTNSPLVTGKDICDLNKNDFTN---VSVVLMNPPY---VS 405

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             KD + K+     +      + K + G +         +           +V     L 
Sbjct: 406 GVKDPITKKKVAKRIFDISGTMSKTNIGQVGIEAPFLELITNLVKDNTIIGVVFPKQYLT 465

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEER 418
               G     +R +LL +  +  I   P   +F      T + I        +
Sbjct: 466 AR--GREAEALRNYLLNDFGLNLIFIYPREGIFKDVTKDTVVLIGRKNNPSSK 516


>gi|208434400|ref|YP_002266066.1| type II adenine specific methyltransferase [Helicobacter pylori
           G27]
 gi|208432329|gb|ACI27200.1| type II adenine specific methyltransferase [Helicobacter pylori
           G27]
          Length = 545

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 82/254 (32%), Gaps = 36/254 (14%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLVNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       +E+  ++     + + YE       +        + TP  +V   
Sbjct: 68  LKGAHNHQEL-ILKYLEILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++        DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKK 304
           +    A+              R     ++   + + KD    K   +F    +NPP+GKK
Sbjct: 167 DAFAIALTK-----------KRIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKK 215

Query: 305 WEKDKDAVEKEHKN 318
           + +++    K+  N
Sbjct: 216 YNQNQKENFKQQFN 229


>gi|225868848|ref|YP_002744796.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702124|emb|CAW99793.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2916

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 73/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+          G+    
Sbjct: 1179 FYTPKTVI--------DGVYKTLSDMGFKQGNILEPSMGIGNFI----------GNLPDE 1220

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                   ++  Q     +  F+   F   +
Sbjct: 1221 MRRSKFYGVELDSISGRIGKL-------------LYPESDIQIKGFEETTFSNNFFDAVI 1267

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D+          E  R           + L   +   K       GG  
Sbjct: 1268 GNVPFGEYKVNDR----------EYNRN----------NFLIHDYFFAKSIDKVRNGGVI 1307

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1308 AFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGTAGTEVTSDIIFLKKR 1362

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1363 DSVLERDE 1370


>gi|260187001|ref|ZP_05764475.1| helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289420602|gb|EFD17803.1| helicase [Mycobacterium tuberculosis CPHL_A]
          Length = 1606

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|169846680|ref|XP_001830054.1| RNA methylase [Coprinopsis cinerea okayama7#130]
 gi|116508824|gb|EAU91719.1| RNA methylase [Coprinopsis cinerea okayama7#130]
          Length = 483

 Score = 42.1 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 89/329 (27%), Gaps = 50/329 (15%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            Y     +N   E+  K + Y    + ++ ++    T  +    + I +FS         
Sbjct: 81  TYEQLHAANQLPEAREKWSKYIEDTSFKFIITAYNHTIPQRRQRAVIENFS--YMGFLGK 138

Query: 118 FDFSST------IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH-----LIRRF 166
            D  +           +         ++    E             + E      L+  F
Sbjct: 139 IDMKNPEILLTCFEEYDDERRATPRARHEGDGEFR-----QVYFGKLLEEGSARPLVGVF 193

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +  +   +     +V  L     L              + +YDP  GTG       + 
Sbjct: 194 DVKKRKFYGNTSMEAEVSLLMANQTLA----------SPGKLMYDPFMGTGSMAYPVAHF 243

Query: 227 VADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +   GS      +    G + EP          +  R+      D++ +          
Sbjct: 244 GSLVFGSDIDGRQMRGKQGMQSEPGVIRAAKQYNVDHRILDLATFDITNH---------P 294

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-----------HKNGELGRFGPGLPKISDG 334
             TG  F   +++PP+G +    +   ++E           H+        P +P     
Sbjct: 295 WRTGGIFDAIITDPPYGVRAGAKRLGRKRELSERQKELCKLHRENPRPDDAPYIPPTKPY 354

Query: 335 SMLFLMHLANKL-ELPPNGGGRAAIVLSS 362
            +  L+              GR    L +
Sbjct: 355 ELSHLVEDLVLFARYILKPNGRLVFFLPT 383


>gi|303311193|ref|XP_003065608.1| tRNA guanosine-2'-O-methyltransferase TRM11, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105270|gb|EER23463.1| tRNA guanosine-2'-O-methyltransferase TRM11, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 414

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG F   A +  A   +           GQ+ E     +    ML   L
Sbjct: 215 PGKVFYDPFVGTGSFCVAAAHFGA--FTFGSDIDARSFKGQKEEGRPIGLVR-NMLQYGL 271

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           E++     + ++      +  +     F   + +PP+G +
Sbjct: 272 EANYLDAFTSDLTNTPFRNMPI-----FDGIICDPPYGIR 306


>gi|254786508|ref|YP_003073937.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Teredinibacter turnerae T7901]
 gi|237684513|gb|ACR11777.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Teredinibacter turnerae T7901]
          Length = 305

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           FG    E  E+ + PR  +     LLL+     F+E P    ++ D   G+G     A +
Sbjct: 95  FGGLRFEVNENVLVPRSPI---AELLLNGMHPWFQEDP---ASVLDLCTGSGCIGILAAS 148

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                               ++     AV    +    L        S         +  
Sbjct: 149 VFQGSEVDIS----------DISASALAVAARNIRNHELVDRVTAIES------DLFNAP 192

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            F G+++   LSNPP+    +      E   +
Sbjct: 193 HFIGRKYDLILSNPPYVDAHDLSSMPAEYHAE 224


>gi|215430948|ref|ZP_03428867.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|289694719|gb|EFD62148.1| helicase [Mycobacterium tuberculosis EAS054]
          Length = 1606

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|209965995|ref|YP_002298910.1| modification methylase,hemK family [Rhodospirillum centenum SW]
 gi|209959461|gb|ACJ00098.1| modification methylase,hemK family [Rhodospirillum centenum SW]
          Length = 338

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 19/144 (13%)

Query: 175 EDFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           E  + PR  +  L  + L   D     E P  +  + D   G+G     A          
Sbjct: 138 ERVIVPRSYIGELLFSDLFGGDGFTLVEDPTEVGRVLDLCTGSGCLAILAA--------- 188

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
             I P       +L PE   V    +    LE            QG         G+R+ 
Sbjct: 189 -GIFPDATVDAVDLSPEALEVARINVAEAGLEERVSLI------QGDLFKP--LKGRRYD 239

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHK 317
             L+NPP+       +   E  H+
Sbjct: 240 VILTNPPYVSAEAMAELPPEYRHE 263


>gi|168697902|ref|ZP_02730179.1| hypothetical protein GobsU_00160 [Gemmata obscuriglobus UQM 2246]
          Length = 1267

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 102/338 (30%), Gaps = 52/338 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------PTRSAVR 56
           +  +L    W+ A+ +            +L    +R LE              P      
Sbjct: 49  TGQTLEE--WR-ADAITQQAVAW-----VLSCVFVRFLEDNRLIDPPKISGPVPPEGEKG 100

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           E  LA      +L  F      S +   EY LS       R   +      +        
Sbjct: 101 ENRLARARDEHEL-FFTGARRGSEFTDREYLLSVFDELAKRPGTKDLYGPHNPIRAI--- 156

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
             ++ S  A  +     ++     SG+   +    +   R + ++Y+ L         + 
Sbjct: 157 -PNWLSPDAAKDILLPFFQKIDAGSGLLVHDFTDPSFDTRFLGDLYQDL----SEAARKK 211

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                TP  V        L P    F  +      + DP CG+G FL    N + +    
Sbjct: 212 YALLQTPVFVEEFILDRTLLPAIETFGLATV---KMIDPACGSGHFLLGGFNKLLELWVK 268

Query: 234 HK---------IPPILVPHGQELEPETHAVCVAGMLI-----RRLESDPRR-DLSKNIQQ 278
            +            +   HG +L P   A+    +L+       + S     D   N+  
Sbjct: 269 KEPGTPPRELVQRALDAIHGVDLNPYAVAIARFRLLLAAWQAAGVTSLKNAPDFKLNLAC 328

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           G +L   L  G+     L    FG  ++ + D VE E 
Sbjct: 329 GDSL---LHGGRSVQKTLDEEVFGHTYQPE-DPVELER 362


>gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosis CDC1551]
 gi|215404161|ref|ZP_03416342.1| helicase [Mycobacterium tuberculosis 02_1987]
 gi|215446243|ref|ZP_03432995.1| helicase [Mycobacterium tuberculosis T85]
 gi|218753743|ref|ZP_03532539.1| helicase [Mycobacterium tuberculosis GM 1503]
 gi|253798919|ref|YP_003031920.1| helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254364844|ref|ZP_04980890.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
            Haarlem]
 gi|254551049|ref|ZP_05141496.1| helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289554192|ref|ZP_06443402.1| helicase [Mycobacterium tuberculosis KZN 605]
 gi|289746023|ref|ZP_06505401.1| helicase [Mycobacterium tuberculosis 02_1987]
 gi|289758143|ref|ZP_06517521.1| helicase [Mycobacterium tuberculosis T85]
 gi|289762180|ref|ZP_06521558.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294996965|ref|ZP_06802656.1| helicase [Mycobacterium tuberculosis 210]
 gi|297634601|ref|ZP_06952381.1| helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297731589|ref|ZP_06960707.1| helicase [Mycobacterium tuberculosis KZN R506]
 gi|306780045|ref|ZP_07418382.1| helicase [Mycobacterium tuberculosis SUMu002]
 gi|306784792|ref|ZP_07423114.1| helicase [Mycobacterium tuberculosis SUMu003]
 gi|306789151|ref|ZP_07427473.1| helicase [Mycobacterium tuberculosis SUMu004]
 gi|306793485|ref|ZP_07431787.1| helicase [Mycobacterium tuberculosis SUMu005]
 gi|306797869|ref|ZP_07436171.1| helicase [Mycobacterium tuberculosis SUMu006]
 gi|306803749|ref|ZP_07440417.1| helicase [Mycobacterium tuberculosis SUMu008]
 gi|306968146|ref|ZP_07480807.1| helicase [Mycobacterium tuberculosis SUMu009]
 gi|313658922|ref|ZP_07815802.1| helicase [Mycobacterium tuberculosis KZN V2475]
 gi|5042237|emb|CAB44655.1| hypothetical protein RvD1-Rv2024c' [Mycobacterium bovis BCG]
 gi|13881753|gb|AAK46361.1| helicase, putative/conserved hypothetical protein [Mycobacterium
            tuberculosis CDC1551]
 gi|134150358|gb|EBA42403.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
            Haarlem]
 gi|253320422|gb|ACT25025.1| helicase [Mycobacterium tuberculosis KZN 1435]
 gi|289438824|gb|EFD21317.1| helicase [Mycobacterium tuberculosis KZN 605]
 gi|289686551|gb|EFD54039.1| helicase [Mycobacterium tuberculosis 02_1987]
 gi|289709686|gb|EFD73702.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713707|gb|EFD77719.1| helicase [Mycobacterium tuberculosis T85]
 gi|308327082|gb|EFP15933.1| helicase [Mycobacterium tuberculosis SUMu002]
 gi|308330525|gb|EFP19376.1| helicase [Mycobacterium tuberculosis SUMu003]
 gi|308334359|gb|EFP23210.1| helicase [Mycobacterium tuberculosis SUMu004]
 gi|308338159|gb|EFP27010.1| helicase [Mycobacterium tuberculosis SUMu005]
 gi|308341852|gb|EFP30703.1| helicase [Mycobacterium tuberculosis SUMu006]
 gi|308349642|gb|EFP38493.1| helicase [Mycobacterium tuberculosis SUMu008]
 gi|308354271|gb|EFP43122.1| helicase [Mycobacterium tuberculosis SUMu009]
 gi|323719430|gb|EGB28558.1| helicase [Mycobacterium tuberculosis CDC1551A]
 gi|326903639|gb|EGE50572.1| helicase [Mycobacterium tuberculosis W-148]
 gi|328458676|gb|AEB04099.1| helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1606

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1032


>gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tuberculosis SUMu007]
 gi|308345340|gb|EFP34191.1| helicase [Mycobacterium tuberculosis SUMu007]
          Length = 1603

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 26/209 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 821  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 880

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 881  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 940

Query: 268  PR----------RDLSKNIQQGSTLSKDLFT----------GKRFHYCLSNPPFGKKWEK 307
                         D  +  + G ++   +F                  + NPP+      
Sbjct: 941  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1000

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM 336
              D           GR      K S   +
Sbjct: 1001 ANDLNANVKYPTLDGRIEQTYAKRSTAQL 1029


>gi|111225673|ref|YP_716467.1| putative Type II restriction enzyme, methylase subunit [Frankia
           alni ACN14a]
 gi|111153205|emb|CAJ64954.1| putative Type II restriction enzyme, methylase subunit [Frankia
           alni ACN14a]
          Length = 1594

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            + R      + +  + TP    R VV H    LL  PDD  +K    +  T+ +P  G+
Sbjct: 529 FVFRLSGRDRQRSASYYTPEVLTRCVVKHSLAELL--PDDEEWKAQRILDLTICEPALGS 586

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV-----PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G FL +A+N +A      +   +        +  EL+        A + + R        
Sbjct: 587 GAFLNEAINQLARKYLERRQEELKTSIPPDQYADELQK-----VKAHLALHRCYGVDLNR 641

Query: 272 LSKNIQQGSTLSKDLFTGKR 291
            +  + + S     +  G +
Sbjct: 642 TAVELAEVSLWLNVMHPGLQ 661


>gi|307244421|ref|ZP_07526532.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
 gi|306492240|gb|EFM64282.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
          Length = 2967

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 113/385 (29%), Gaps = 66/385 (17%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNL 100
             RLE  LE     +  K       +ID ++   K   ++F  T E     L  +     L
Sbjct: 1105 YRLESDLERIFENLTYKKSKDIIQDIDEKAEKPKTEVHNFKITEEILPEKLTPS---ERL 1161

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
               + + S   +      +  ST   +    + +         +   +       + + E
Sbjct: 1162 NQNLEAISMLNRVESGQRELDSTAQEVLAKYIGWGGLSEV--FDESKEGQWKEARAFLKE 1219

Query: 161  HLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L +       E     F TP+ V+            +           + +P+ G G F
Sbjct: 1220 NLSQDEYDSAKESTLTSFYTPKTVIDSI--------YSTLSGMGFKSGNILEPSMGIGNF 1271

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +          G+          +G EL+  +  +                   ++  Q 
Sbjct: 1272 I----------GNIPDEMNKSKFYGVELDSVSGRIGKL-------------LYPESDIQI 1308

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              L +  F+   F   + N PFG+    D++                     +  + L  
Sbjct: 1309 KGLEETSFSNNFFDAVIGNVPFGEYKVNDRE--------------------YNKNNFLIH 1348

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A + SS  +        +  +RR+L         + LP D F 
Sbjct: 1349 DYFFAKSIDKVRNGGIIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFK 1403

Query: 399  --FRTNIATYLWILSNRKTEERRGK 421
                T + + +  L  R +   R +
Sbjct: 1404 GVAGTEVTSDIIFLKKRDSIRERDE 1428


>gi|229013843|ref|ZP_04170971.1| hypothetical protein bmyco0001_42520 [Bacillus mycoides DSM 2048]
 gi|228747512|gb|EEL97387.1| hypothetical protein bmyco0001_42520 [Bacillus mycoides DSM 2048]
          Length = 328

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQKEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTLFNSAKE-------ELTMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E   K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIVASEYTLKADEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|86605042|ref|YP_473805.1| hypothetical protein CYA_0321 [Synechococcus sp. JA-3-3Ab]
 gi|86553584|gb|ABC98542.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 1525

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 79/282 (28%), Gaps = 49/282 (17%)

Query: 153 RVMSNIYEHLIRR-----FGSEV-----------SEGAEDFMTPRDVVHLATALLLDPD- 195
             + ++YE L+       F ++             +    + TP D+V       L+P  
Sbjct: 411 EELGSVYESLLDYRPQILFTAQATPQFELSYGSERKSTGSYYTPPDLVAELVRSALEPVL 470

Query: 196 --------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILV 241
                       KE   +   + DP CG+G FL  A   +         G     P  + 
Sbjct: 471 QERLKSAASREEKERAILSLRVLDPACGSGHFLLAAARRLGKELAKVRTGEEEPAPETVR 530

Query: 242 ----------PHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                      +G +  P    +C   + +       P   L   I+ G +L   +   K
Sbjct: 531 EAIRDVVAHCIYGVDKNPLAVELCRVALWLEAHCAGKPLTFLDHRIKCGDSLVG-MLDLK 589

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFLMHLANKLE 347
                L +  F       ++A     +     R      ++S   +   +         +
Sbjct: 590 VLDKGLPDAAFEAVSAHSREAARSLKRRNRAERRDLETGQLSLSLEADQVVAQLSQELQQ 649

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           L        A V     L+     + E    + L E   +  
Sbjct: 650 LEAIQDDSPANVRRKQELYTRYCQNPE---HQKLTEACNLWT 688


>gi|56964506|ref|YP_176237.1| adenine-specific methyltransferase [Bacillus clausii KSM-K16]
 gi|56910749|dbj|BAD65276.1| adenine-specific methyltransferase [Bacillus clausii KSM-K16]
          Length = 328

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 104/323 (32%), Gaps = 52/323 (16%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             + + L + I     +A A   D  F   I +  +      + K  + ++   +     
Sbjct: 14  DQSADILLNQIEGTYLDALAAAGDNLFEQQILQEVRGETEAMLEKKLNEVK--DEKWERE 71

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA---TALLLDPDDALFKESPGMIRTLY 210
            M   ++  I + G + +  A   +TP  V          L+DP    FK        L 
Sbjct: 72  DMRKAFQLAIIK-GMKGTVQANHMLTPDAVSLFIGYLVQKLIDPKKERFK--------LL 122

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D   G+G  L    NHV +              G E +     V  A        ++ ++
Sbjct: 123 DLAVGSGNLLFSICNHVNNEPE---------AIGFEADETLLKVAFA-------SANLQQ 166

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                  Q S                S+ P G  + KD  A   E K GE   +      
Sbjct: 167 REVALYHQDSVQVTLPHA----DIVASDLPVG-YYPKDDVAKGFELKAGEGHSY------ 215

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                      +  +     + GG A +++ +    + +A +    +  +L +  ++  +
Sbjct: 216 -------IHHLMIEQAIRSLHPGGYAVLLVPNFLFSSDQAEA----LNVYLKKEAIVLGL 264

Query: 391 VALPTDLFFRTNIATYLWILSNR 413
           + LP+ LF  +     + +L  +
Sbjct: 265 LQLPSSLFSNSQHGKSILLLQKK 287


>gi|148262245|ref|YP_001228951.1| hypothetical protein Gura_0162 [Geobacter uraniireducens Rf4]
 gi|146395745|gb|ABQ24378.1| hypothetical protein Gura_0162 [Geobacter uraniireducens Rf4]
          Length = 1016

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 90/293 (30%), Gaps = 42/293 (14%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +   +P  ++S IY   +        + +  F TP  +  L    L +      + S   
Sbjct: 270 NFKYIPVELISAIYNRFLGD-RPVERKVSGAFYTPHFLADLTVNQLWEELTPAIRSSQDF 328

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHK----------IPPILVPHGQELEPETHAVC 255
             T+ DP CG+  FL      + +                +  +   +G + E     + 
Sbjct: 329 --TVLDPACGSAIFLVRIFQRMVEDWRFLHPGGTPDWDTLVAIVERLNGWDKETSAVRIG 386

Query: 256 VAGMLIRRLESD---------PRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302
           +  + I  LE             R L   + + +   +D F       +F     NPP+ 
Sbjct: 387 IFSLYIALLEEVEPAAILKLLAERKLLPPLFRKTMCDRDFFGKDTPNTKFDLVFGNPPWV 446

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS- 361
            + E    +  +  K  EL           + +  F+       +      G   ++L  
Sbjct: 447 SRKEDQVVSATEWCKAHELP------MPAKELAWAFVWKSIQHTK----SEGMIGLLLPA 496

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILS 411
              L N    S ++  R   L+  L+  ++        LF      T L I  
Sbjct: 497 MGVLLNHSEPSIQA--RGLWLKQVLLSKVINFSDICFLLFDGAKRPTALCIFR 547


>gi|256544755|ref|ZP_05472127.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399644|gb|EEU13249.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 2547

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 68/248 (27%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYKTLTDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G E +  +  +                   +   Q     +  F+   F   +
Sbjct: 882  IQGSKVYGVEKDSLSGRIAR-------------ELYPEVNIQIKGFEETNFSNNFFDLVI 928

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG                     F     + +  + L   +   K       GG  
Sbjct: 929  GNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVRNGGII 968

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A + SS  +        +  +R+++         + LP   F     T + + +  L  R
Sbjct: 969  AFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDIIFLKKR 1023

Query: 414  KTEERRGK 421
             +   R  
Sbjct: 1024 DSVIERDD 1031


>gi|229062324|ref|ZP_04199643.1| hypothetical protein bcere0026_43940 [Bacillus cereus AH603]
 gi|228716956|gb|EEL68639.1| hypothetical protein bcere0026_43940 [Bacillus cereus AH603]
          Length = 330

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 65  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQKEI--- 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 121 ---TVLDPAIGTGNLMTTLFNSAKE-------ELTMSGFGVEVDEVLIKLALVNANLQKH 170

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E   K  E  
Sbjct: 171 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIVASEYTLKADEGM 217

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 218 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 260

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 261 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 291


>gi|166367862|ref|YP_001660135.1| DNA modification methyltransferase related protein [Microcystis
           aeruginosa NIES-843]
 gi|166090235|dbj|BAG04943.1| DNA modification methyltransferase related protein [Microcystis
           aeruginosa NIES-843]
          Length = 904

 Score = 42.1 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 43/252 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   +  NI+E        E       F +  D++ +    +    +   +++  +  
Sbjct: 291 SKIRPAIFGNIFEG--TANAEERHTYGMHFTSEADIMKIVRPTISRYWEEKIEQAGTIGE 348

Query: 208 -----------TLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPI 239
                       + DP CG+G FL  A   +                             
Sbjct: 349 LNTLQLELQQYKVLDPACGSGNFLYVAYQELKRIEQLLIEKIANRRRSSSDQLQISFVTP 408

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------LFTG-KRF 292
              +G ++ P    +    ++I R  +  R +L++      TL  +      LFT  ++ 
Sbjct: 409 KQFYGMDINPFAVELARVTLMIARKVAIDRFNLTEASLPLDTLDSNIICADALFTDWQKA 468

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPPF    +  +  +  ++ N    RF                          + 
Sbjct: 469 DAIIGNPPF-LGGKHMRLNLSDDYVNKVFARF---SEVKDSVDFCSYWFRLAH--DQLDE 522

Query: 353 GGRAAIVLSSSP 364
            GRA +V ++S 
Sbjct: 523 KGRAGLVGTNSI 534


>gi|325919124|ref|ZP_08181183.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
 gi|325550433|gb|EGD21228.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
          Length = 382

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 16/154 (10%)

Query: 76  AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
           A Y  + T E     + +     +      +  DN    +        + +         
Sbjct: 240 ASYGLHETKELPKRWIETIKHEIDRAEIPQAKKDNMAQPYASISVHPELDKKRNNYPKGI 299

Query: 136 ICKNFSGI-----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
           + +    I      L        ++ + Y   + ++     +     +TPR +  L   +
Sbjct: 300 LYELIKRIHEKAAPLMTAEEGTDILGHFYGEFL-KYTGGDKKALGIVLTPRHITELFALI 358

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                      +     T+ D   GTGGFL  AM
Sbjct: 359 A----------NVNKKSTVLDICAGTGGFLVSAM 382


>gi|183217332|gb|ACC59251.1| putative restriction-modification protein [Streptococcus
           pneumoniae]
          Length = 2028

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 488 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRERSE---------LYGVELDS 538

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 539 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 585

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 586 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 624

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 625 DN-----VLQEIKTNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 670


>gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga
           sputigena Capno]
 gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga
           sputigena Capno]
          Length = 2020

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 115/397 (28%), Gaps = 62/397 (15%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + +P+ GTG FL     H  D                E+   T  +     L+    S  
Sbjct: 621 VLEPSVGTGNFL-----HATDNLGLKTNVSAF-----EINETTAKIAK---LLHPEASIN 667

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            R           + KD     ++   + NPP+G         + +E K      +    
Sbjct: 668 LRSFETEFITDKGIKKDFSP--QYDLVIGNPPYG-NHRGLYLGLGEETKLPRYEDY---- 720

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                           +     N G   A+VL S  L      SG       L E     
Sbjct: 721 -------------FVKRSLDVMNEGATLAMVLPSGWLNRQDKLSG-----AELSEAY--- 759

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE------GKKRR 442
               LP  +F  T++ T + IL      + +      N ++ +     +       +K R
Sbjct: 760 ---RLPNGVFKATDVGTDIVILRKNSQAQTQ------NISNYFKEHPQQILGDTLQRKNR 810

Query: 443 IINDDQ-RRQILDIYVSRENGKFSRML--DYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
              ++   +  LD  ++R     ++ +    +T   R +++           K  +A  E
Sbjct: 811 FGREEDYVKGNLDDALTRLQEFTTKKVIQPEQTQTTREVQLDMFSTFESAPAKEPIAEKE 870

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI--KSNEAKTLKVKASKSFI 557
            D+    +     +  L   K  + Q         F   ++  + +    L  K  +   
Sbjct: 871 EDVVVTTVPNEEYNNLLVEAKEKVGQAINIFRNIKFKSLAVITEWDNYAALLRKLDRKNT 930

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDT-NLTEYENV 593
                       +AD +   +          T+ E V
Sbjct: 931 KFTKEELSDISKKADSIIQEHTPKFKKAQEATDIEVV 967


>gi|186939583|dbj|BAG31010.1| putative methylase [Bosea sp. AJ110407]
          Length = 330

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 19/128 (14%)

Query: 175 EDFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           E  + PR  +  L    +L+ +       P  +  + D   G+      A     +    
Sbjct: 132 ERVIVPRSYIGELLMRGVLEAEGLGLVPEPEAVDRVLDLCTGSACLAIIAAGRFPNAEVD 191

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                       EL P+   V           +D   D   ++ QG         G+R+ 
Sbjct: 192 A----------VELSPDALDVARLN------VADYDLDDRVHLFQGDLFVP--LDGQRYD 233

Query: 294 YCLSNPPF 301
             ++NPP+
Sbjct: 234 LIIANPPY 241


>gi|154483947|ref|ZP_02026395.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC
           27560]
 gi|149734989|gb|EDM50875.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC
           27560]
          Length = 2219

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 100/377 (26%), Gaps = 89/377 (23%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           +  GY  +NT E     +G  +  + +         + +   E  DF   + R+E  G  
Sbjct: 530 EKEGYVSWNTVEE--EIIGEYDIPDEVFEMGKKPISDMERDIEKKDFHYNLWRIETGGSK 587

Query: 134 YKI------CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS---------------- 171
            +        K    IE       D         ++ ++                     
Sbjct: 588 TRYQWNVEAIKTLKQIEKEERNATDDEQK-----ILSQYAGWGGIPEVFDEKNDLWRREY 642

Query: 172 EGAEDFMTPRDVVHLATAL---------LLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  ++ +TP +  +   ++         +    +            + +P+ G G F   
Sbjct: 643 KELKELLTPAEYENARASVNNAFYTSPDIAMCINQALANFGVTKGNILEPSMGIGNFF-- 700

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                   GS          +G E++  T  +         +      D           
Sbjct: 701 --------GSMPDAMQNCKLYGVEMDDVTGRIAKQLYQNASITIAGFEDT---------- 742

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F    F   + N PFG     D                    PK +  +     + 
Sbjct: 743 ---KFPDNFFDAAVGNVPFGDYKVYD--------------------PKYNKLNFRVHDYF 779

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399
             K       GG AA + +   +           +RR+L +   +   + LP   F    
Sbjct: 780 LAKALDQIRPGGIAAFITTKGTM-----DKANPNVRRYLAQRAELIGAIRLPNTAFKENA 834

Query: 400 RTNIATYLWILSNRKTE 416
            T + + +     R+ +
Sbjct: 835 GTEVTSDILFFKKRERQ 851


>gi|329666726|gb|AEB92674.1| putative restriction endonuclease [Lactobacillus johnsonii DPC 6026]
          Length = 1562

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 94/309 (30%), Gaps = 43/309 (13%)

Query: 42   RRLECALEPTRSAVREKYLAFG------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
            RR+   ++  + A                 +ID E  V++          ++        
Sbjct: 720  RRINDLIDSNQGAKLAFDKFLKSLRYNINDSIDQEQAVEMLAQHLITEPVFNALFSDYDF 779

Query: 96   TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             RNN      + S +   I   F         E+    Y   K  +    +       ++
Sbjct: 780  VRNN------AVSKSMNDIISAFKMFGFAKEQEQLKPFYDSVKLRASGIDNIQGKQTFII 833

Query: 156  SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTC 214
              +Y    +     V+E      TP +VV      +    +  F +S       + DP  
Sbjct: 834  -QLYNSFFKTAFPRVTESMGIVFTPVEVVDFIIHSVDWALNKYFGKSLASKNVHILDPFT 892

Query: 215  GTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGM-----LIR 262
            GTG F+T  + ++       KI    +        H  E+   ++ +    +      + 
Sbjct: 893  GTGTFITRTLYYLKQQMDEGKITYDDILRKYMHELHANEIVLLSYYIAAINIEAVFDEVN 952

Query: 263  R-------LESDPRRDLSKNIQQGSTLSKDLF----------TGKRFHYCLSNPPFGKKW 305
                     +     D  ++ ++ STL  D+F                  +SNPP+  + 
Sbjct: 953  GPDRGYKPFDGIVLTDTFESTERESTLDDDMFGTNNERLRKQQETPITAIISNPPYSGRQ 1012

Query: 306  EKDKDAVEK 314
            + + D  E 
Sbjct: 1013 KNENDENEN 1021


>gi|290969266|ref|ZP_06560791.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780772|gb|EFD93375.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 2905

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 113/385 (29%), Gaps = 70/385 (18%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
             RLE  LE     +  +         +     K   ++F    E     L  +   NN  
Sbjct: 1047 YRLESDLERIFENLTYQ---SPEKTTEEIEIKKAEAHNFQIKEETLPDKLSPSERLNNNL 1103

Query: 102  SYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
              I+  +   +   + D      +AR    G L  +     G +           S + E
Sbjct: 1104 EAISMLNRIERGERDLDITAQEVLARYVGWGGLADVFDEEKGGQWKEAR------SFLKE 1157

Query: 161  HLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L +  + +        F TP+ V+        D       +       + +P+ G G F
Sbjct: 1158 NLSQAEYEAARESTLTSFFTPKTVI--------DGVYKTLSDMGFKQGNILEPSMGIGNF 1209

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +          G+          +G EL+  +  +                   ++  Q 
Sbjct: 1210 I----------GNIPDEMNKSKFYGVELDSVSGRIGKL-------------LYPESDIQI 1246

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              L +  F+   F   + N PFG+    D++                     +  + L  
Sbjct: 1247 KGLEETSFSNNFFDAIIGNVPFGEYKVNDRE--------------------YNKNNFLIH 1286

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A + SS  +        +  +RR+L         + LP D F 
Sbjct: 1287 DYFFAKSIDKVRNGGIIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFK 1341

Query: 399  --FRTNIATYLWILSNRKTEERRGK 421
                T + + +  L  R +   R +
Sbjct: 1342 GVAGTEVTSDIIFLKKRDSIRERDE 1366


>gi|259047435|ref|ZP_05737836.1| adenine-specific methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259035626|gb|EEW36881.1| adenine-specific methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 322

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 116/344 (33%), Gaps = 46/344 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            S + +  +  + I  D + +  +  L    ++ ++ K +  ++L   +  +      + 
Sbjct: 14  YSNVEALGETLQNIVND-NTAQQVEGLPSNEVVQELNKAYKQLDLTSYSSEEIRRMIQFA 72

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L  +   +        MTP D + L  A ++D           M   + D   G+G  L
Sbjct: 73  FL--KAAKQDGLQTNHQMTP-DAIGLLVAYMID-----QMTKKDMTLQIADFAAGSGNLL 124

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +  +  +   G   +   I      + +     + +    + +L+               
Sbjct: 125 STILLFLQSAGKTAQGTAI------DNDEVLVHLALQAFALEQLDVKTSLQDGLQDLLVD 178

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                        + +S+ P G  +  D +A   E +N E   F           +L   
Sbjct: 179 PQ----------DFVVSDLPIG-YYPVDANAARFETENEEGHSFAHH--------LLIEQ 219

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L+          + +  + LF    G     +  +L +   ++A++A P +LF  
Sbjct: 220 HI-RYLKEAG-----IGLFIVPTNLFETVEGE---TLLAYLQKETYVQAMLAFPRNLFKD 270

Query: 401 TNIATYLWILSNR-KTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              +  L I+  R K  ++  +V L +  +     R + +K  +
Sbjct: 271 VQFSKSLLIVQKRGKAAKQVSQVLLGDIPEF--KNREKFRKFTL 312


>gi|325297206|ref|YP_004257123.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
 gi|324316759|gb|ADY34650.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
          Length = 1144

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+G  +   +  V K        R+     +  +       +  +       
Sbjct: 664 FDIIIGNPPYGASFSTAEKNVLK-------ARYSDVHMRTPE----SYCYFISLAFRLAR 712

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G  + ++ ++  F       E      L  + L+ A + L  + F   ++ T +++
Sbjct: 713 NTGVVSYIVPNNMFF---QNENEKTRSLLLFRHQLVRA-INLGDNTFENADVPTCIFV 766


>gi|288553724|ref|YP_003425659.1| hypothetical protein BpOF4_03505 [Bacillus pseudofirmus OF4]
 gi|288544884|gb|ADC48767.1| hypothetical protein BpOF4_03505 [Bacillus pseudofirmus OF4]
          Length = 331

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 77/247 (31%), Gaps = 42/247 (17%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           G + +      MTP  V    + L+                ++ D   G+G  LT  +N 
Sbjct: 86  GMKGATQPNHSMTPDAVCLFLSYLV-----NKVMAKAKGGYSVLDLAAGSGNLLTALLNQ 140

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
             +              G E++     +      ++ +E +             ++    
Sbjct: 141 SENPAKG---------FGFEVDETLLKLAFVSSNLQEIELELF--------HKDSIEPLT 183

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F        +++ P G       D + KE+K            K  +G       +  K 
Sbjct: 184 FPE--VDLVVTDLPIG---YYPHDEIAKEYK-----------VKADEGHSFSHHLMIEKG 227

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG    ++ +    + +A     ++  +L E+ +I  ++ LP  +F   N    
Sbjct: 228 INSVKEGGFLFYIVPNFLFESEQAP----KLHAYLKEHAMIHGLLQLPKTMFTSDNHGKS 283

Query: 407 LWILSNR 413
           + +L  +
Sbjct: 284 ILMLQKK 290


>gi|288801294|ref|ZP_06406748.1| adenine specific DNA methyltransferase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288331677|gb|EFC70161.1| adenine specific DNA methyltransferase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 537

 Score = 42.1 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 42/241 (17%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +  K+   Y++ K  +  +L+ D   D      YE+ +             + T ++++
Sbjct: 69  NKSRKSTKSYELSKPTAITDLNSDCF-DEESGQRYENSL---TESYRNKEGIYYTNKNII 124

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                 +                T  DP CG G F+ +A+          K   +   +G
Sbjct: 125 ADMLKHI----------KVTKQTTFLDPCCGCGNFIMEAIE---------KGVEVENIYG 165

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            + +     +    + ++            NI     L+      K+F    +NPP+GKK
Sbjct: 166 FDTDAIAVEITKQRVFLK------TGKQPINIICADFLTTAKSLNKKFDLIYTNPPWGKK 219

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             K+           +L + G      S  +   +  L        +  G   ++L  S 
Sbjct: 220 LSKNHKE-----CFSQLYQIGKNTDTCSLFAFASIQLL--------SQNGSLGLLLPESV 266

Query: 365 L 365
           L
Sbjct: 267 L 267


>gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 2992

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 72/258 (27%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +       T   V+               ++       + +P+CG G F    
Sbjct: 1434 EEYEAARASTLNAHYTSPTVIRAI--------YDAVEQMGFRTGNILEPSCGVGNFF--- 1482

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1483 -------GMLPESMAGSRLYGVELDSISGRIAKQLYPKADITVAGFETTDRRDF------ 1529

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+    DK             + G  +          
Sbjct: 1530 -------------YDLAIGNVPFGQYQVNDKA----------YNKLGFNIHN-------- 1558

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +   + LP + F
Sbjct: 1559 --YFFAKSLDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAF 1611

Query: 399  ---FRTNIATYLWILSNR 413
                 T + + +  L  R
Sbjct: 1612 KANAGTEVVSDILFLQKR 1629


>gi|257093734|ref|YP_003167375.1| putative type II DNA modification enzyme [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046258|gb|ACV35446.1| putative type II DNA modification enzyme [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1158

 Score = 42.1 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 50/182 (27%)

Query: 149 TVPDRVMSNIYEHLI------------RRFG--------------SEVSEGAEDFMTPRD 182
            +    + ++YE L+            RRFG                  + +  + TP  
Sbjct: 416 DMDSEELGSVYESLLELVPELTLTASVRRFGFIGDAAEQAGGSTKGNARKLSGSYYTPDS 475

Query: 183 VVHLATALLLDPDDALFKESPG-------MIRTLYDPTCGTGGFLTDAMNHVAD------ 229
           +V       LDP  A    +         +  ++ DP CG+G FL  A   +A+      
Sbjct: 476 LVQELIRSALDPVIAQTLAANPRQPVQALLELSVCDPACGSGHFLLAAARRLAEEVARLS 535

Query: 230 --------CGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQ 278
                       H +  ++    +G +  P    +    + +     D P   L  +++ 
Sbjct: 536 ATEGNPLPADYRHALRDVVAHCIYGVDKNPLAIELARTALWLEAYTPDRPLTFLDHHLRC 595

Query: 279 GS 280
           G 
Sbjct: 596 GD 597


>gi|307710462|ref|ZP_07646899.1| endonuclease and methylase LlaGI [Streptococcus mitis SK564]
 gi|307618725|gb|EFN97864.1| endonuclease and methylase LlaGI [Streptococcus mitis SK564]
          Length = 1565

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 80/282 (28%), Gaps = 37/282 (13%)

Query: 141  SGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDP 194
              + L  + + +     +++  +Y+          +E      TP +VV      + +  
Sbjct: 811  DSVRLRAEGIDNAQAKQKIIITLYDKFFSTGFKSTTERLGIVFTPVEVVDFIVKSVDVVL 870

Query: 195  DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPE-- 250
                 K        + DP  GTG F+T  ++++             IL  + QEL     
Sbjct: 871  RKHFGKTLASENVHILDPFTGTGTFITRTLHYLKSLMDSGEITFDDILRKYTQELHANEI 930

Query: 251  ---THAVCVAGM------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH-------- 293
               ++ +    +      +       P   +       ST  +D      F         
Sbjct: 931  VLLSYYIAAINIEAVFDEINGDEPYTPFEGIVLTDTFESTELEDTLDDSFFGTNDKRLKR 990

Query: 294  -------YCLSNPPFGKKWEKDKDAVEKEH--KNGELGRFGPGLPKISDGSMLFLMHLAN 344
                     + NPP+ K    + D  +  H  K  E  R        ++     +     
Sbjct: 991  QQEQPITAIIGNPPYSKGQGSESDNNQNIHYPKLEENIRRTYVAKSKANAQNATMDSYVK 1050

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             +    +      I+   S      + S +  +R  L +   
Sbjct: 1051 AVRWATDRLTNQGIISFVSNGSFLDSSSADG-LRASLYDEFN 1091


>gi|78776679|ref|YP_392994.1| hypothetical protein Suden_0478 [Sulfurimonas denitrificans DSM
           1251]
 gi|78497219|gb|ABB43759.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 908

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 24/157 (15%)

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----DCGSHHKIP 237
           ++      +  +P       +        DP CG+G FL  A   +     +     KI 
Sbjct: 325 ELSEEFAKIKNNPKQLQIFHAKISNLKFLDPACGSGNFLVIAYRELKLVEFEVLKSLKIL 384

Query: 238 PIL----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-------- 285
             L      +G E+E     +    ML+   + +            +   KD        
Sbjct: 385 TQLVHIDQFYGFEIEELPSRITQTAMLLIDHQMNLLFAQMFGEPHFNIPIKDSANIFNVN 444

Query: 286 --------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                   +  G +  + + NPPF     + K+  E 
Sbjct: 445 ALRVDWEKILDGVKIDFIIGNPPFLGSKMQSKEQKED 481


>gi|288957889|ref|YP_003448230.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
 gi|288910197|dbj|BAI71686.1| adenine-specific DNA-methyltransferase [Azospirillum sp. B510]
          Length = 310

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 175 EDFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           E  + PR  +  L  + L   DD    E P  +  + D   G+G     A          
Sbjct: 109 ERVIVPRSYIGELLFSDLFGGDDFTIVEDPTSVERVLDLCTGSGCLAILAA--------- 159

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +I P       +L P+   V    +     E            QG   +      +++ 
Sbjct: 160 -RIFPEAQVDAVDLSPDALEVAKRNVADSGFEDRITL------HQGDLFAP--LKTRKYD 210

Query: 294 YCLSNPPF 301
             ++NPP+
Sbjct: 211 VIITNPPY 218


>gi|256419630|ref|YP_003120283.1| hypothetical protein Cpin_0584 [Chitinophaga pinensis DSM 2588]
 gi|256034538|gb|ACU58082.1| hypothetical protein Cpin_0584 [Chitinophaga pinensis DSM 2588]
          Length = 826

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 91/323 (28%), Gaps = 68/323 (21%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-RNNLESYI 104
                    +  +YL+         + V++    F   + +  +     N         +
Sbjct: 2   DKTLALYEHILREYLSAYFDKQQNINPVELNRERFATKALFIATIFFLKNHSGKTPTKLV 61

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
              +D  K  F   +  ST+       L++ + K+FS I+     V    +S  YE L+ 
Sbjct: 62  QEANDWLKTQFAQENLLSTLIDSVNPLLIHLVNKHFSEID--TTDVLSLDISTFYETLLG 119

Query: 165 ------------RFGSEVSEGAEDFMTPRDVVHLATALLLD----------------PDD 196
                         G         + TP ++    T   +D                  D
Sbjct: 120 IETGNENNLVEISTGKNYRNKLGSYYTPSELAKSITQKTIDTFFTSNFGINKLSTANHVD 179

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQE 246
           A   +    I +  D +CG G FL + + +     ++  +                   +
Sbjct: 180 AAILKEISSI-SFVDFSCGGGNFLIEILKYFEQVANNLNVTAEEKLQILRSVAKNISAFD 238

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---------------- 290
           ++     V    +L+          +S+N   G+ L +  F                   
Sbjct: 239 VDCLALEVAKLNLLLSTGLHHAYATVSENFIHGNFLLQSTFPIDEKKKIEIFSSGFIYHE 298

Query: 291 ----------RFHYCLSNPPFGK 303
                     ++   L NPP+ K
Sbjct: 299 ALSIFKEKVSKYDVILGNPPWEK 321


>gi|121593951|ref|YP_985847.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120606031|gb|ABM41771.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 1642

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 63/256 (24%), Gaps = 55/256 (21%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  +       T   V+               +        + +P  G G FL    
Sbjct: 134 DYASARASVNNSHYTEVHVIEAM--------WQAVERFGFTGGRVLEPAAGVGHFLGAMP 185

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +A+                E++  +  +  A       +                  K
Sbjct: 186 RTLAER---------SAVTAIEIDQISGRLLQALYAPHGADVRIAP-----------FEK 225

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + N PFG       DA  K +    +  +  G                 
Sbjct: 226 VALPENWFDLVIGNVPFGN--YPVADASHKPYARFRIHNYFFG----------------R 267

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---T 401
            L+L   GG    I         G   + +  +R  +     +   + LP   F     T
Sbjct: 268 ALDLVRPGGLVCFIT------STGTMEARDDAVRGHVSSQAELLGAIRLPKGAFAGIAST 321

Query: 402 NIATYLWILSNRKTEE 417
            + T +  L  R + E
Sbjct: 322 EVQTDILFLRKRHSGE 337


>gi|322376606|ref|ZP_08051099.1| SNF2 family protein [Streptococcus sp. M334]
 gi|321282413|gb|EFX59420.1| SNF2 family protein [Streptococcus sp. M334]
          Length = 2077

 Score = 42.1 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 493 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRERSE---------LYGVELDS 543

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 544 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 590

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 591 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 629

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 630 DN-----VLQEIKTNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 675


>gi|296125549|ref|YP_003632801.1| D12 class N6 adenine-specific DNA methyltransferase [Brachyspira
           murdochii DSM 12563]
 gi|296017365|gb|ADG70602.1| D12 class N6 adenine-specific DNA methyltransferase, putative
           [Brachyspira murdochii DSM 12563]
          Length = 1047

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR--------T 208
           + YE  + ++  E+ E    + TP+ VV+     +       F ++ G+          T
Sbjct: 309 HFYETFLYKYNPELRELRGVYYTPQSVVNFIIDSIDIVLKEYFNKNKGLGDALEKETNIT 368

Query: 209 LYDPTCGTGGFLTDAMN-----HVADCGSHHKIPPILVPHGQELEPETHAVC 255
           L D   GTG FL D+       +  +   ++    I   +G E     + + 
Sbjct: 369 LLDFAAGTGTFLLDSFRKALSYYQKNSVKYNPKELINKFYGFEFMIAPYTIA 420


>gi|168210989|ref|ZP_02636614.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710996|gb|EDT23178.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 1553

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S  +       TP+ V+      L        +        + +P+ G G F +  
Sbjct: 464 EEYESARASTLNAHYTPKVVIDSIYRAL--------RLFGFREGNILEPSMGVGHFFSRL 515

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                              +G EL+  +  +         +E     + +          
Sbjct: 516 ----------PDNMNNSKLYGVELDDISGRISKQLYQNASIEIKGYEETT---------- 555

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F+   F   + N PFG     DKD                     +  + L   +  
Sbjct: 556 ---FSNNFFDVAIGNIPFGDYKVFDKDF--------------------NKNNFLIHDYFF 592

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K        G  A V S   +    +      +R +L E       + LP + F     
Sbjct: 593 AKTLDKLKENGIVAFVTSKGTMDKANSS-----VREYLSERADFIGAIRLPKNTFKSSAN 647

Query: 401 TNIATYLWILSNR 413
           T + T +  L  +
Sbjct: 648 TEVTTDIIFLQKK 660


>gi|113461011|ref|YP_719078.1| hypothetical protein HS_0868 [Haemophilus somnus 129PT]
 gi|112823054|gb|ABI25143.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 97

 Score = 42.1 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 30 DFGKVILPFTLLRRLECALEPTRSAVRE 57
          DF + +L     R +    E       E
Sbjct: 2  DFKQYVLGTLFYRFISEKFEKYNDCAFE 29


>gi|319412029|emb|CBY91962.1| SNF2 family protein [Streptococcus pneumoniae]
          Length = 2074

 Score = 41.7 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 490 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFYAAMPRRIREKSE---------LYGVELDS 540

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 541 VTGAIAKQ---LHPNTHIEVRGFEEVSYQNNS----------FDLVLTNVPFGNFRIADK 587

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 588 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 626

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 627 DN-----VLQEIKSNTHFLGGVRLPDTAFKSIAGTRVTTDLLFFQKDQAKN 672


>gi|315171700|gb|EFU15717.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 2159

 Score = 41.7 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 52/229 (22%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           + ++ +    L +      +T+ DP  GTG F  +    +                G E+
Sbjct: 647 SEIVQEMYQVLNQIGNFANKTILDPGMGTGNFFMNLPESLRSSKQ----------IGVEI 696

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +P T  +                 L    Q      + +   ++    ++N PF     +
Sbjct: 697 DPLTSRIAK--------------QLLPEAQIYQMGYEQVELPEKVDAVITNIPFNDIRVR 742

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           DK          +                     LA  ++     G    I  +SS    
Sbjct: 743 DKKYDRYNFSIHDY-------------------FLAKSIDSLKENGILMVITSASSMDKR 783

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                   + R +L +   +   V LP   F     T + + + +   +
Sbjct: 784 ND------KAREYLAKKANLVGAVRLPKTAFRQSAGTEVISDILLFQKK 826


>gi|40643146|emb|CAE14681.1| unnamed protein product [Leptospira phage LE1]
          Length = 1971

 Score = 41.7 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 107/377 (28%), Gaps = 56/377 (14%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E       E       S+    + +    Y F   S    + +         +S + + S
Sbjct: 420 EGLDQKAEEWVDQAYKSDAKSLNDLLNKAYRFVQISSDDSNKIRKGLKSIPHQSNLETAS 479

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            N + + E F          K        +  +       T   + +   YE    +  +
Sbjct: 480 KNVEIVKEKFSQKKQFEINSKCK------QILASTPPSQITEEQKEILRQYEGSGGQSTN 533

Query: 169 EVSEGAE----DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           + +E        F TPR         ++     +         +  +P+ G G F     
Sbjct: 534 DDAESNRGMLYQFFTPRK--------MISKVQDIMARYLKPGDSGLEPSAGIGRF----- 580

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLS 283
              A+         +L     E  P+ +       ++        +   +  +   +   
Sbjct: 581 ---AEGEGSKYNWDML-----EYNPDDNTAFQIARILHPDANVSDKAFETLFVDSKNRSV 632

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            + + GK++ +   NPP+G            E         G G  +       +  +  
Sbjct: 633 GENYKGKKYKFISGNPPYG------------EMSGKFKAIEGKGWNR-------YEHYFI 673

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N+       GG    V+ S+ L      +GE+  ++ +     +     +P   F  T I
Sbjct: 674 NRGLDTLEEGGTMFYVVPSTFL-----QAGETTWKKKIFAKAELLEAYRMPEGSFGNTAI 728

Query: 404 ATYLWILSNRKTEERRG 420
              + +L    T  +  
Sbjct: 729 GVDVIVLRKNTTGTQDN 745


>gi|208434589|ref|YP_002266255.1| hypothetical protein HPG27_630 [Helicobacter pylori G27]
 gi|208432518|gb|ACI27389.1| hypothetical protein HPG27_630 [Helicobacter pylori G27]
          Length = 887

 Score = 41.7 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 80/638 (12%), Positives = 183/638 (28%), Gaps = 79/638 (12%)

Query: 36  LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           L     +        L   R  + +        ++               TS      + 
Sbjct: 33  LKMIFDKNPEFFHDFLNSLRDNIHQNIREDEALDM--------------ITSHIITKPIF 78

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                +N+++ IA   D                 L+    LY+  K  +     P +  +
Sbjct: 79  DALFGDNIKNPIAKALDKMVLKLSTLGLEGETKDLKN---LYESVKTEATHAKSPKSQQE 135

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 136 -LIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 194

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGML--------- 260
           P  GTG F+   ++      S   +           ++   ++ + +  +          
Sbjct: 195 PFTGTGSFIARLLSKENKLISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 254

Query: 261 IRRLESDPRRDLSKNIQQ--------------GSTLSKDLFTGKRFHYCLSNPPF--GKK 304
           ++  ++    D    +++               +   KD    +     + NPP+  G K
Sbjct: 255 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKEIKDTLADQNIRVIIGNPPYSSGAK 314

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            + D +      K  +L     G     K+   +   L+             G    V++
Sbjct: 315 SQNDNNQNLSHPKLKKLVYEKYGKNSTAKVGKATRDALIQSIRMASDVVKDKGVIGFVVN 374

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-------------FFRTNIATYLW 408
            S + +          R+ + +      ++ L  +               F +     + 
Sbjct: 375 GSFIDSKSTDG----FRKCVAKEFSHLYVLNLRGNTRTSGEERKKQGDGIFDSGSRATVA 430

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           I+   K    +     I+  D+   ++ E K  ++   +     L+    +E    ++  
Sbjct: 431 IVFFVKDNSVKNNT--IDYYDIGDYLKREEKLHKLAQFEN----LESVPFKEITPNAK-G 483

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D+        + L PL+    L    +  + +        P   +F   IL   +Q    
Sbjct: 484 DWINQRNDDFEKLIPLKRDKTLQNDSIFDINSGGVVSGRDPWVYNFSPKILMQSVQNCID 543

Query: 529 --YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
                 + F     ++ + +T  VK+   +             +   V ++  + I    
Sbjct: 544 TYNADLKRFNARFREAFKQRTKGVKSGDLYKHLNDKEITTDKTKIAWVQNLKTQLIKGKK 603

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK 624
           L ++       S+   F ++      D +I+      K
Sbjct: 604 LDDFSQEKISVSLYRPFNKQWLYWDKD-WINTQGKFSK 640


>gi|170761675|ref|YP_001788746.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408664|gb|ACA57075.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 472

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 100/309 (32%), Gaps = 37/309 (11%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL-TDAMNHVADCGSHHKIPPILVP------H 243
           +++  D +        + + +  CG G  L      ++ D  S +     +        +
Sbjct: 14  VVELLDRVGYVKDLYGKKVIENACGNGNILKVIVDRYIRDSLSANIPIQSIKLGLESDIY 73

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G E++ E +  C+  + +  + +               + K+   G +F Y + NPP+  
Sbjct: 74  GAEIDKEHYIKCIENLDL--VANKYDIHNVSWKILNVDILKERLQG-KFDYVIGNPPYIT 130

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             + D    +   +N         +         +            N  G+ A ++ SS
Sbjct: 131 YRDLDNQTRKFVKEN-------YEVCAKGKFDYCY--AFIEASIKCLNNNGKLAYLIPSS 181

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
              N  A      + ++L +    +        +F     ++ + IL      +      
Sbjct: 182 IFKNVFAQRLRDYMLKYLCKIYDYKT-----KRVFKNVVTSSAIIILDKGNESDE----- 231

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
            I  +D+   +  + KK  +           ++  + + K S+   +  +    + +   
Sbjct: 232 -ITYSDIAQKVSWKIKKFNLTGKW-------VFKRKVDNKTSKKARFDDYFSASMSIATL 283

Query: 484 LRMSFILDK 492
           L  +FI+ +
Sbjct: 284 LNEAFIISE 292


>gi|149011898|ref|ZP_01833046.1| hypothetical protein CGSSp19BS75_02538 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182684981|ref|YP_001836728.1| hypothetical protein SPCG_2011 [Streptococcus pneumoniae CGSP14]
 gi|221232761|ref|YP_002511915.1| hypothetical protein SPN23F_20670 [Streptococcus pneumoniae ATCC
           700669]
 gi|147763853|gb|EDK70786.1| hypothetical protein CGSSp19BS75_02538 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182630315|gb|ACB91263.1| hypothetical protein SPCG_2011 [Streptococcus pneumoniae CGSP14]
 gi|220675223|emb|CAR69812.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
          Length = 317

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGFKYLK----SDGYAIFLAPSDLLTSPQSDL----LKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|159041629|ref|YP_001540881.1| hypothetical protein Cmaq_1062 [Caldivirga maquilingensis IC-167]
 gi|157920464|gb|ABW01891.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167]
          Length = 1231

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 20/135 (14%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR--------DVVHLATALLL 192
           +  +L P+   D ++  +Y+ L+ R   ++     ++ TP         +V      L+ 
Sbjct: 341 ATPQLEPEYARD-LLKRLYQELMPR---DIRHNLGEYYTPDWLADFLLDEVGLSLGNLME 396

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQE 246
              +   K  P     + DP CG+G FL   +  +      + +  +LV +      G +
Sbjct: 397 MGKEDSLK--PLQQLRVLDPACGSGTFLVRYIARLRAYAREYFLEDVLVDYVLQNVVGYD 454

Query: 247 LEPETHAVCVAGMLI 261
           L P          L+
Sbjct: 455 LNPLAVLTARTNYLL 469



 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-----SMLFLMHLANK 345
           +F Y + NPP+       +D   +E  N     +G    +   G       L ++ +A  
Sbjct: 597 KFDYIVGNPPWVNWENLPEDF--RELSNDLWQHYGLAEIRGKMGLGKVKRDLAMLFMARC 654

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            +L    GG+ A ++  +  F  +AGSG    RR+L     +  +
Sbjct: 655 FDLYLKPGGKHAFLMPFTV-FKTQAGSG---FRRFLATKTRVHVV 695


>gi|71903669|ref|YP_280472.1| phage protein [Streptococcus pyogenes MGAS6180]
 gi|71802764|gb|AAX72117.1| phage protein [Streptococcus pyogenes MGAS6180]
          Length = 232

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K  + I    D+  D     +       Y+  ++ F  E +  +
Sbjct: 27  DEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRK 86

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCG 231
             +   TP+ V  L + ++                  Y+   GTGG L  A      +  
Sbjct: 87  NKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLNDS 133

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P     H +EL  +     +  M IR +        S   Q
Sbjct: 134 PFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 179


>gi|256618605|ref|ZP_05475451.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598132|gb|EEU17308.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 2159

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 52/229 (22%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           + ++ +    L +      +T+ DP  GTG F  +    +                G E+
Sbjct: 647 SEIVQEMYQVLNQIGNFANKTILDPGMGTGNFFMNLPESLRSSKQ----------IGVEI 696

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +P T  +                 L    Q      + +   ++    ++N PF     +
Sbjct: 697 DPLTSRIAK--------------QLLPEAQIYQMGYEQVELPEKVDAVITNIPFNDIRVR 742

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           DK          +                     LA  ++     G    I  +SS    
Sbjct: 743 DKKYDRYNFSIHDY-------------------FLAKSIDSLKENGILMVITSASSMDKR 783

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                   + R +L +   +   V LP   F     T + + + +   +
Sbjct: 784 ND------KAREYLAKKANLVGAVRLPKTAFRQSAGTEVISDILLFQKK 826


>gi|282934391|ref|ZP_06339655.1| conserved hypothetical protein [Lactobacillus jensenii 208-1]
 gi|281301512|gb|EFA93792.1| conserved hypothetical protein [Lactobacillus jensenii 208-1]
          Length = 271

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +   F + + ++        +  K    I+     V D       E+      +   +  
Sbjct: 15  QHIQFENYLRKIVFDPEKRNEFFKQLLKIDAQC-VVQDTFKQYFEEY------AAERKAN 67

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKES------PGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +   TP +V  L + ++    DA FK+            T  D T GTG  L       A
Sbjct: 68  QQDYTPDEVSKLLSIIVNTKYDADFKDDMKKRYFHKKGYTAADITAGTGSLLIQ--KWWA 125

Query: 229 DCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  +      +P        EL        +  + +R + +    
Sbjct: 126 DMTAELPWTYVPHRYFYFSSELADNVIPYLLCNLALRGMNAIVVH 170


>gi|262194052|ref|YP_003265261.1| hypothetical protein Hoch_0744 [Haliangium ochraceum DSM 14365]
 gi|262077399|gb|ACY13368.1| hypothetical protein Hoch_0744 [Haliangium ochraceum DSM 14365]
          Length = 1709

 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 6/86 (6%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM------IRTLYDPTCGTGGFL 220
                + +  + TP   V    A  L P  A    +            + DP  G+G FL
Sbjct: 477 AGLGRKSSGSYYTPTAFVRFLVAEALGPQVAERSPTSDPQPLRILDLRVLDPAMGSGHFL 536

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQE 246
            +A   + D               QE
Sbjct: 537 VEACRFLGDKLYEACRLCDERASDQE 562


>gi|317177267|dbj|BAJ55056.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F16]
          Length = 545

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 82/254 (32%), Gaps = 36/254 (14%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLVNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       ++   ++     + + YE       +        + TP  +V   
Sbjct: 68  LKGAHNHQEL-ILKYLKRLENSSDLEKLGSSYEE---ELSNTTRNLEGIYYTPNKIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++        DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKK 304
           +    A+              R     ++   + + KD    K   +F    +NPP+GKK
Sbjct: 167 DAFAIALTK-----------KRIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKK 215

Query: 305 WEKDKDAVEKEHKN 318
           + +++    K+H N
Sbjct: 216 YNQNQKENFKQHFN 229


>gi|306833453|ref|ZP_07466580.1| possible endonuclease-methyltransferase fusion protein
           [Streptococcus bovis ATCC 700338]
 gi|304424223|gb|EFM27362.1| possible endonuclease-methyltransferase fusion protein
           [Streptococcus bovis ATCC 700338]
          Length = 1107

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                D  + +  + K         + +  +L P+ V D V+  IY  LI     ++   
Sbjct: 348 YLASEDQQNIVTNIIKNIFNLIQQFDLATYKLRPEEVQD-VLQEIYMTLIP---EQIRHL 403

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ +P  +V                    + + + DPTCG+G F+  A+  V +   +
Sbjct: 404 LGEYFSPDWIVE--------HSLDRIGYFGDIDKKIIDPTCGSGAFVIQALKRVLNARGN 455

Query: 234 ---HKIPPILVPH--GQELEPETHAVCVAGMLI 261
              H+    +  +  G +L P +     A  ++
Sbjct: 456 SITHEDAKKITKNIVGFDLNPISAVSAKANYIL 488


>gi|269125713|ref|YP_003299083.1| putative type II DNA modification enzyme [Thermomonospora curvata
           DSM 43183]
 gi|268310671|gb|ACY97045.1| putative type II DNA modification enzyme [Thermomonospora curvata
           DSM 43183]
          Length = 1219

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 40/149 (26%)

Query: 153 RVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDP--- 194
             + ++YE L+               RR G    + +  + TP  +V       LDP   
Sbjct: 258 EELGSLYESLLEHVPGYDPAERAFVLRRLGGNERKISGSYYTPPSLVEALLDAALDPVID 317

Query: 195 ------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------- 240
                   A  +E   +  T+ DP CG G FL  A   +A   +  +             
Sbjct: 318 DALESGRTAAERERALLSLTVCDPACGPGRFLVAAARRIAGRLAFVRTGDPRPPARQVRR 377

Query: 241 --------VPHGQELEPETHAVCVAGMLI 261
                     +G +L P    +    + +
Sbjct: 378 ALREVIAGCVYGVDLNPMAIELAKVSLWL 406


>gi|67921961|ref|ZP_00515477.1| hypothetical protein CwatDRAFT_4549 [Crocosphaera watsonii WH 8501]
 gi|67856177|gb|EAM51420.1| hypothetical protein CwatDRAFT_4549 [Crocosphaera watsonii WH 8501]
          Length = 360

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 71/276 (25%), Gaps = 89/276 (32%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           ELH   V D  +  I E  I R     ++    F TP+ +      L +           
Sbjct: 167 ELHQAPVIDPKVKQIAE--IER-SLIGAKIPGYFPTPKPICEQMVKLAI----------L 213

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +++P+ G G     A+   AD                EL      +      ++ 
Sbjct: 214 QPGMRVWEPSGGKGDIA-SAIKEAADVNLEV----------CELNYNLRELLK----LKG 258

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                           + +  D F     +   L NPPF           E  H      
Sbjct: 259 F---------------NVIVSDCFDITTSYDRILMNPPF-------VKGSEINHIRYAFD 296

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R                             GGR   ++  S  F         E R WL 
Sbjct: 297 R--------------------------LVDGGRLVAIVPESIEFRKD--KKYREFREWLE 328

Query: 383 ENDLIEAIVA--LPTDLFFR----TNIATYLWILSN 412
           +      I+   LP   F      T + T + +L  
Sbjct: 329 DKC----IINDPLPQGSFLNSDRSTGVNTRILVLER 360


>gi|228993370|ref|ZP_04153286.1| hypothetical protein bpmyx0001_41020 [Bacillus pseudomycoides DSM
           12442]
 gi|228999423|ref|ZP_04159002.1| hypothetical protein bmyco0003_39780 [Bacillus mycoides Rock3-17]
 gi|229006978|ref|ZP_04164607.1| hypothetical protein bmyco0002_38780 [Bacillus mycoides Rock1-4]
 gi|228754296|gb|EEM03712.1| hypothetical protein bmyco0002_38780 [Bacillus mycoides Rock1-4]
 gi|228760368|gb|EEM09335.1| hypothetical protein bmyco0003_39780 [Bacillus mycoides Rock3-17]
 gi|228766438|gb|EEM15081.1| hypothetical protein bpmyx0001_41020 [Bacillus pseudomycoides DSM
           12442]
          Length = 336

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 91/315 (28%), Gaps = 48/315 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +Y+ +  +    +FE       ++      L  +  K       + +      +   ++ 
Sbjct: 33  TYLEALVETGDNLFEGAVLQEGLSESTIERLNREYSK------FNEEKYKSEELRKAFQL 86

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I + G +    A   MTP  V       L        KE      T+ DP  GTG  +T
Sbjct: 87  AILK-GMKDGIQANHEMTPDAVGMFM-NYLFQKFMKGQKEI-----TVLDPAIGTGNLMT 139

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              N   +  +       +   G E++     + +    +++   +              
Sbjct: 140 TIFNGAQEGTT-------ISGFGVEVDDLLVRLALVNANLQKQAIEFFNQDGLAPLYID- 191

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                         + + P G  +  +  A E   K  E   +                 
Sbjct: 192 ---------PVDVVVCDLPIGF-YPNEIGASEYTLKADEGMSYAH-------------HL 228

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              +       GG    ++ +    + +A    + I+    E   I+ ++ LP  +F   
Sbjct: 229 FIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK----ETSYIQGLLQLPVSMFKNE 284

Query: 402 NIATYLWILSNRKTE 416
             A  +++L  +   
Sbjct: 285 KNAKSIFVLQKKGPN 299


>gi|237808925|ref|YP_002893365.1| modification methylase, HemK family [Tolumonas auensis DSM 9187]
 gi|237501186|gb|ACQ93779.1| modification methylase, HemK family [Tolumonas auensis DSM 9187]
          Length = 311

 Score = 41.7 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 23/152 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F        E  + PR  +     L+        +  P     + D   G+G       +
Sbjct: 99  FAGMEFYVDERVLIPRSPI---AELIHKRFTPWLQHEPT---RIMDLCTGSGCIAIAMAH 152

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                               +L  +  AVC   + +  +        S        L   
Sbjct: 153 TFPAAEVDA----------LDLSEDALAVCEMNIEMHGMLGQVIPICSD-------LFDA 195

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           L  G ++   +SNPP+    +      E  H+
Sbjct: 196 LPAGDKYDLIVSNPPYVDVEDMSDLPEEFHHE 227


>gi|283479508|emb|CAY75424.1| putative restriction enzyme, methylase subunit [Erwinia pyrifoliae
           DSM 12163]
          Length = 1283

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 35/187 (18%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+                NGEL  F       S   +  +F+ H  
Sbjct: 557 WILAQRYDAVVANPPYMGSKGM----------NGELKEFAKDNFPESKADLFAMFMQHAF 606

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A +   + +F     S    +R WLL+N +   +  L    F + + 
Sbjct: 607 SLLK----ENGFNAQINMQAWMFLSSYES----LRGWLLDNKMFITMAHLGARAFGQISG 658

Query: 403 --IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             + T  W++ N + E+ +  V                KK  ++           +   +
Sbjct: 659 EVVQTTAWVIKNHRNEKYQ-PVFF-----RLIGGTEAEKKNDLLLHKNI------FNRFK 706

Query: 461 NGKFSRM 467
              F ++
Sbjct: 707 QNTFKKI 713


>gi|301312460|ref|ZP_07218375.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300829549|gb|EFK60204.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1820

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 42/213 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + +P+ G G F+   + H  +         +L                 G ++R L  D
Sbjct: 10  RMLEPSAGVGVFVDSMLRHSPNADVMAFEKDLLT----------------GTILRHLYPD 53

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +      ++       +      F   +SN PFG     D +      ++   GR    
Sbjct: 54  QK------MRTCGFEKIERPFNNYFDLAVSNIPFGDIAVFDAEF----QRSDSFGRR--- 100

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                        +   K       GG  A + S   L      S ++ +R  L     +
Sbjct: 101 -----SAQKTIHNYFFLKGLDAVRDGGIVAFITSQGVL-----NSTKTSVRNELFSQANL 150

Query: 388 EAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            + + LP +LF     T + + L +L    +++
Sbjct: 151 VSAIRLPNNLFTDNAGTEVGSDLIVLQKNLSKK 183


>gi|146281056|ref|YP_001171209.1| hypothetical protein PST_0661 [Pseudomonas stutzeri A1501]
 gi|145569261|gb|ABP78367.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 801

 Score = 41.7 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 18/118 (15%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + Y+ L+      + +   +F TP         + LD        S    +   
Sbjct: 91  SRDVLKHFYQDLVP---DALRKSLGEFYTP----DWLVEVTLD----KTGVSDWTDKRFL 139

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLI 261
           DPTCG+G FL   +  +                       G +L P         +LI
Sbjct: 140 DPTCGSGSFLLATIKRIRQQAEAASWSQKATLEHITRSVWGFDLNPLAVQAARVNLLI 197


>gi|302186858|ref|ZP_07263531.1| type II restriction enzyme, methylase subunit [Pseudomonas syringae
           pv. syringae 642]
          Length = 728

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L       K    +  T+ +P  G+  FL 
Sbjct: 555 FIYRLAGRAREKSASYYTPEVLTKCLVEHALKEILPGKKADEILNLTVCEPAMGSAAFLN 614

Query: 222 DAMNHVADCGSHHKIPPI 239
           +A++ +A+     K   +
Sbjct: 615 EAVSQLAEAYLQAKQKEL 632


>gi|157961100|ref|YP_001501134.1| hypothetical protein Spea_1272 [Shewanella pealeana ATCC 700345]
 gi|157846100|gb|ABV86599.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
          Length = 1353

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 69/256 (26%), Gaps = 46/256 (17%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMN 225
               +    TPR +     +  L P      E+P   +     + DP  G+G FL +   
Sbjct: 567 ERRRSGSHYTPRSLTAPIVSKTLQPLLRCLGETPSAEQILELKICDPAMGSGAFLVECCR 626

Query: 226 HVADC-----GSHHKIPPILV-------------------PHGQELEPETHAVCVAGMLI 261
            +AD      G   +I  I V                    +G +       +    + +
Sbjct: 627 QLADEVVAAWGRTQEIENIAVNCPEGDVVAHARRLVAQCCLYGVDKNIMAVQLAKLSLWL 686

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   R+L       +    D   G  F    +   +    +      E      E+
Sbjct: 687 ----FTLARELPFTFLDHNLRYGDSLVGLNFEQIKA-FHWKPTQQLSFLEDEITRTLDEV 741

Query: 322 GRFGPGLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 + +       +G  L    L +          + A V   +          E +
Sbjct: 742 VSIRQEIHQLAKNSTPEGQWLKAQRLFDA-NDATEKVRKIADVCVGAFF-------AEDK 793

Query: 377 IRRWLLENDLIEAIVA 392
           I+  L E  + E ++ 
Sbjct: 794 IKARLNERQVREGVIR 809


>gi|158317174|ref|YP_001509682.1| putative type II restriction enzyme, methylase subunit [Frankia sp.
           EAN1pec]
 gi|158112579|gb|ABW14776.1| putative type II restriction enzyme, methylase subunit [Frankia sp.
           EAN1pec]
          Length = 1581

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + R      + +  + TP    R VVH A   LLD D    + +  +  T+ +P  G+G
Sbjct: 534 FVYRLAGRERQQSASYYTPEVLTRSVVHHAIEELLDQDGTKTRAADILAMTICEPALGSG 593

Query: 218 GFLTDAMNHVA 228
            F  +A+  +A
Sbjct: 594 AFAIEAVRQLA 604


>gi|331674465|ref|ZP_08375225.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331068559|gb|EGI39954.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 264

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L         +    F TP  V  +   + L    ALF+  P +  TL +P
Sbjct: 121 DFLGSVFMQL-----ELGDKYRSQFFTPWSVASMMAQMQLGNVKALFENKPFI--TLSEP 173

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G  +     +     +++P    +    + +  +  +     
Sbjct: 174 ACGAGSMILAMADTLNRSG--YPAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 231

Query: 273 SKNIQQGSTLSKDLF 287
           S   ++   L     
Sbjct: 232 SLCNERRRVLLTPGH 246


>gi|301308913|ref|ZP_07214863.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300833103|gb|EFK63723.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1820

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 42/213 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + +P+ G G F+   + H  +         +L                 G ++R L  D
Sbjct: 11  RMLEPSAGVGVFVDSMLRHSPNADVMAFEKDLLT----------------GTILRHLYPD 54

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +      ++       +      F   +SN PFG     D +      ++   GR    
Sbjct: 55  QK------MRTCGFEKIERPFNNYFDLAVSNIPFGDIAVFDAEF----QRSDSFGRR--- 101

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                        +   K       GG  A + S   L      S ++ +R  L     +
Sbjct: 102 -----SAQKTIHNYFFLKGLDAVRDGGIVAFITSQGVL-----NSTKTSVRNELFSQANL 151

Query: 388 EAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
            + + LP +LF     T + + L +L    +++
Sbjct: 152 VSAIRLPNNLFTDNAGTEVGSDLIVLQKNLSKK 184


>gi|260940781|ref|XP_002615230.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720]
 gi|238850520|gb|EEQ39984.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720]
          Length = 248

 Score = 41.7 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +       L K+       + D  CG GG          + G            G ++ 
Sbjct: 57  EVTARFTARLVKKLLPDCENILDVCCGGGGNTIQFAKIFKNVG------------GVDVN 104

Query: 249 PETHAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
                       +  ++++    + D +K  +  S +  DL  G +F +   +PP+G   
Sbjct: 105 ANNIKCSQHNSTVYGVDANTWFVQGDWNKLSEDSSWIPVDLPNG-KFDFIFCSPPWGGPN 163

Query: 306 EKDKDAVE 313
            K +   +
Sbjct: 164 YKKQQWFD 171


>gi|34558224|ref|NP_908039.1| hypothetical protein WS1930 [Wolinella succinogenes DSM 1740]
 gi|34483943|emb|CAE10939.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 615

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 16/174 (9%)

Query: 150 VPDRVMSNIYEHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           V +      YE L+  F                TP+D+    T       +         
Sbjct: 64  VKEIERDFTYEDLLELFEFVISPSDKLVNGAIYTPKDIREFITHQAF---EQHRNNQNIY 120

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              + D +CG GGFL DA   + +     +K        G +++P +       + +  +
Sbjct: 121 DFKIADISCGCGGFLIDATKVLKEKTNKSYKQIYKENIFGVDIQPYSIERTEVLLTLLAI 180

Query: 265 E-SDPRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKD 310
           E  +       ++    +L  D +           F   L NPP+      D+ 
Sbjct: 181 EYGEDEEIFDFHLYDADSLEFDWYKENSQIEVSNGFDIILGNPPYVCSRNMDEK 234


>gi|139473364|ref|YP_001128080.1| hypothetical protein SpyM50495 [Streptococcus pyogenes str.
           Manfredo]
 gi|134271611|emb|CAM29838.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
          Length = 210

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K  + I    D+  D     +       Y+  ++ F  E +  +
Sbjct: 5   DEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRK 64

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCG 231
             +   TP+ V  L + ++                  Y+   GTGG L  A      +  
Sbjct: 65  NKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLNDS 111

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P     H +EL  +     +  M IR +        S   Q
Sbjct: 112 PFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|77163545|ref|YP_342071.1| hypothetical protein Noc_A0028 [Nitrosococcus oceani ATCC 19707]
 gi|254436402|ref|ZP_05049907.1| hypothetical protein NOC27_3374 [Nitrosococcus oceani AFC27]
 gi|76881859|gb|ABA56541.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207087936|gb|EDZ65210.1| hypothetical protein NOC27_3374 [Nitrosococcus oceani AFC27]
          Length = 916

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 35/141 (24%)

Query: 209 LYDPTCGTGGFLTDAMNHVADC--------------GSHHKIPPIL---VPHGQELEPET 251
           ++DP  G+G FL  A   +                 G        +     +G E++   
Sbjct: 351 VFDPAMGSGNFLIIAYKELRRLEMATFRSLQAMSGSGQQEIFMSGIQLSQFYGIEIDDFA 410

Query: 252 HAVCVAGMLI--RRLESDPRRDLSK-----------NIQQGSTLSKDLFTGKRFH----- 293
           H +    + +   ++ +   ++              N+ QG++L  D             
Sbjct: 411 HEIAQLSLWLVEHQMNTLFVKEFGHAEPVLPLKDTANLVQGNSLRMDWQKVCPNDGSAEI 470

Query: 294 YCLSNPPFGKKWEKDKDAVEK 314
           Y   NPPF     ++   ++ 
Sbjct: 471 YVCGNPPFIGHGSRENSQLDD 491


>gi|295102472|emb|CBL00017.1| DNA methylase [Faecalibacterium prausnitzii L2-6]
          Length = 1989

 Score = 41.7 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 60/213 (28%), Gaps = 62/213 (29%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRR 263
           + +P+ G G F           G           +G EL+  T  +       A + +  
Sbjct: 488 ILEPSMGVGNFF----------GMLPDTMADSRLYGVELDSITGRIAKKLYPQADITVAG 537

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            E+  R+D                    +   + N PFG+    DK             +
Sbjct: 538 FETTDRQDF-------------------YDLAIGNVPFGQYKVNDKA----------YNK 568

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            G  +            +   K       GG  A V            S +S  R+ + E
Sbjct: 569 LGFNIHN----------YFFAKAIDQVRPGGVIAFVT-----SRYTMDSKDSTARKHMAE 613

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
              +   + LP + F     T + + +  L  R
Sbjct: 614 CADLLGAIRLPNNAFKANAGTEVVSDIIFLQKR 646


>gi|313115794|ref|ZP_07801238.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621879|gb|EFQ05390.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1405

 Score = 41.7 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 61/213 (28%), Gaps = 62/213 (29%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRR 263
            + +P+ G G F           G           +G EL+  T  +       A + +  
Sbjct: 957  ILEPSMGVGNFF----------GMLPDSMADSRLYGVELDSITGRIAKKLYPQADITVAG 1006

Query: 264  LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             E+  RRD                    +   + N PFG+    DK             +
Sbjct: 1007 FETTDRRDF-------------------YDLAVGNVPFGQYKVNDKA----------YNK 1037

Query: 324  FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             G  +            +   K       GG  A V            S +S  R+ + E
Sbjct: 1038 LGFSIHN----------YFFAKAIDQARPGGIVAFVT-----SRYTMDSKDSAARKHMAE 1082

Query: 384  NDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
               +   + LP + F     T++ + +  L  R
Sbjct: 1083 RAALLGAIRLPNNAFRANAGTDVVSDIIFLQKR 1115


>gi|326484583|gb|EGE08593.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Trichophyton equinum
           CBS 127.97]
          Length = 454

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 16/167 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E         ++      L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAVTCGSD--IDGRSFRGKEATSHIDTGVISNFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---- 320
            S      +         +  L + + F   + +PP+G +        + + + GE    
Sbjct: 271 LSRFLDTFTS-----DLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMF 325

Query: 321 -----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  R     PK        L  + +         GR ++ + +
Sbjct: 326 QGVPSYKRENYIFPKRPYAFDAMLDDILDFAAQTLVVNGRISLWMPT 372


>gi|21910233|ref|NP_664501.1| hypothetical protein SpyM3_0697 [Streptococcus pyogenes MGAS315]
 gi|28876162|ref|NP_795389.1| hypothetical protein SpyM3_0697 [Streptococcus pyogenes phage
           315.1]
 gi|28896064|ref|NP_802414.1| hypothetical protein SPs1152 [Streptococcus pyogenes SSI-1]
 gi|21904427|gb|AAM79304.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes phage 315.1]
 gi|28811314|dbj|BAC64247.1| conserved hypothetical protein (phage associated) [Streptococcus
           pyogenes SSI-1]
          Length = 210

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 23/167 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS-- 171
           +  I R+     +YK  K  + I    D+  D     +       Y+  +R F  E +  
Sbjct: 4   TDEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLDIETDLSYDWFMRYFEDEHADR 63

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +  +   TP  V  L T L+                T ++   GTGG L  A        
Sbjct: 64  KNKKQDFTPLSVSKLLTGLV-------------SGHTYHESAVGTGGILIQAWQRHRISS 110

Query: 232 SHHKIPPILVPHG-QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           +     P    +  +EL        +  M IR +        S   Q
Sbjct: 111 NPFTYKPSDYWYQVEELSDRALPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|145642041|ref|ZP_01797612.1| HemK [Haemophilus influenzae R3021]
 gi|145273221|gb|EDK13096.1| HemK [Haemophilus influenzae 22.4-21]
          Length = 292

 Score = 41.7 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 34/216 (15%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + +        IP
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELEPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L  +  +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSNAERNQLNVEFLQSRWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRA 356
           NPP+           + EH +    RF P    +++      L H+        N  G  
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNGV- 248

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
                   L       GE ++R   LEN    +E +
Sbjct: 249 -------LLLEHGWQQGE-KVRSIFLENYWEMVETV 276


>gi|225870148|ref|YP_002746095.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|225699552|emb|CAW93149.1| putative helicase [Streptococcus equi subsp. equi 4047]
          Length = 2913

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 114/384 (29%), Gaps = 68/384 (17%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
             RLE  LE     +  K         +++   K   ++F  T E     L  +   NN  
Sbjct: 1049 YRLESDLERVFENLTYKKPETIAKESEIK---KAEAHNFKITEETLPDKLSPSERLNNNL 1105

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
              I+  S       E   F ST   +    + +    +    E        R    + E+
Sbjct: 1106 EAISMLSRIESGQRE---FDSTAQEVLARYVGWGGLADVFDEEKGGQWKEARSF--LKEN 1160

Query: 162  LIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L +  + +        F TP+ V+        D       +       + +P+ G G F+
Sbjct: 1161 LSQAEYEAARESTLTSFYTPKTVI--------DGVYKTLSDMGFKSGNILEPSMGIGNFI 1212

Query: 221  TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                      G+          +G EL+  +  +                   ++  Q  
Sbjct: 1213 ----------GNLPDEMNKSKFYGVELDSISGRIGKL-------------LYPESDIQIK 1249

Query: 281  TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             L +  F+   F   + N PFG+    D+          E  R           + L   
Sbjct: 1250 GLEETSFSNNFFDVAIGNVPFGEYKVNDR----------EYNRN----------NFLIHD 1289

Query: 341  HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-- 398
            +   K       GG  A + SS  +        +  +RR+L         + LP D F  
Sbjct: 1290 YFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKG 1344

Query: 399  -FRTNIATYLWILSNRKTEERRGK 421
               T + + +  L  R +   R +
Sbjct: 1345 TAGTEVTSDIIFLKKRDSVLERDE 1368


>gi|150400052|ref|YP_001323819.1| N-6 DNA methylase [Methanococcus vannielii SB]
 gi|150012755|gb|ABR55207.1| N-6 DNA methylase [Methanococcus vannielii SB]
          Length = 1041

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 112/387 (28%), Gaps = 92/387 (23%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           IL     + +    E   S   E++    G         K      Y T EY    +   
Sbjct: 359 ILGHIFEQSISDLEEIKASVSGEEFDKTKG---------KRKKDGVYYTPEYITRYIVEQ 409

Query: 95  NTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                LE       +          +  +T     K     +   + S  +L  D + D 
Sbjct: 410 AIGGWLEDRKKEIENKINEEIAKKIENKNTKDGKSKTWKPKEYFTDVSTEQLQKDRLKDG 469

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +      HL     S  S  A                          +       + DP 
Sbjct: 470 I------HLGTNTQSNYSLKAWQEY----------------------KEILKNIKILDPA 501

Query: 214 CGTGGFLTDAMNH-VADCGSHHKIPPILV-----------------PHGQELEPETHAVC 255
           CG+G FL  A+N+ V +    +KI   L                   +G +L  E+  + 
Sbjct: 502 CGSGAFLIQALNYLVKEGNQVNKIISYLQGGTTALFNLKADILRNNLYGVDLNAESVEIT 561

Query: 256 VAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLF-----------------TGKRFHYCLS 297
              + +  +E  +    L  NI+ G++L  D+                      F   + 
Sbjct: 562 KLSLWLNSVEKGEKLTALDNNIKCGNSLIDDMNVAGDKAFKWEEEFKEIIENGGFDVVIG 621

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G K       +    +N  + ++  G  +        ++            GG   
Sbjct: 622 NPPYGAK-------LSTVEQNYLINKYIQGGGET-------VISFLKFSYGTIKNGGYLG 667

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLEN 384
            ++  S +F+    S    IR +L E+
Sbjct: 668 FIIPKSFIFS----SNYQSIRSYLKED 690


>gi|19746674|ref|NP_607810.1| hypothetical protein spyM18_1788 [Streptococcus pyogenes MGAS8232]
 gi|71910841|ref|YP_282391.1| phage protein [Streptococcus pyogenes MGAS5005]
 gi|19748896|gb|AAL98309.1| conserved hypothetical phage protein [Streptococcus pyogenes
           MGAS8232]
 gi|71853623|gb|AAZ51646.1| phage protein [Streptococcus pyogenes MGAS5005]
          Length = 210

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K  + I    D+  D     +       Y+  ++ F  E +  +
Sbjct: 5   DEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRK 64

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCG 231
             +   TP+ V  L + ++                  Y+   GTGG L  A      +  
Sbjct: 65  NKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLNDS 111

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P     H +EL  +     +  M IR +        S   Q
Sbjct: 112 PFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|323181484|gb|EFZ66911.1| N-6 DNA Methylase family protein [Escherichia coli 1357]
          Length = 610

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 78/250 (31%), Gaps = 36/250 (14%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I   P      ++ +IY  ++    +  SE    +  P  V  L        D A     
Sbjct: 108 IAQFPAEDAGYLIGSIYTVMLP--SAYRSELGAYYTPPPLVARLL-------DLAEKSGV 158

Query: 203 PGMIRTLYDPTCGTGGFL----TDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVA 257
                ++ DP CG G FL       +           +  I     G E++P    + + 
Sbjct: 159 DFSHASVIDPACGGGAFLAPVAIRMLKKDKGSSPEWMLRRISRRLKGIEIDPFAAWMSLV 218

Query: 258 GM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            +   L+       RR     I     L +D F+G  +   + NPP+G +   D    EK
Sbjct: 219 LLESVLMPLCVKVKRRLPEDTIIVADALQQDKFSG--YDLVVGNPPYG-RVTLDIKTREK 275

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             ++        GL       +           +     G  A +  +S L     G   
Sbjct: 276 YSRSLFGHANLYGLF----TDLAV--------RMVKEKTGVIAFLTPTSFL----GGQYF 319

Query: 375 SEIRRWLLEN 384
           + +R  L E 
Sbjct: 320 TALRTLLTEK 329


>gi|74312097|ref|YP_310516.1| putative methylase [Shigella sonnei Ss046]
 gi|73855574|gb|AAZ88281.1| putative methylase [Shigella sonnei Ss046]
          Length = 610

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 78/250 (31%), Gaps = 36/250 (14%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I   P      ++ +IY  ++    +  SE    +  P  V  L        D A     
Sbjct: 108 IAQFPAEDAGYLIGSIYTVMLP--SAYRSELGAYYTPPPLVARLL-------DLAEKSGV 158

Query: 203 PGMIRTLYDPTCGTGGFL----TDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVA 257
                ++ DP CG G FL       +           +  I     G E++P    + + 
Sbjct: 159 DFSHASVIDPACGGGAFLAPVAIRMLKKDKGSSPEWMLRRISRRLKGIEIDPFAAWMSLV 218

Query: 258 GM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            +   L+       RR     I     L +D F+G  +   + NPP+G +   D    EK
Sbjct: 219 LLESVLMPLCVKVKRRLPEDTIIVADALQQDKFSG--YDLVVGNPPYG-RVTLDIKTREK 275

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             ++        GL       +           +     G  A +  +S L     G   
Sbjct: 276 YSRSLFGHANLYGLF----TDLAV--------RMVKEKTGVIAFLTPTSFL----GGQYF 319

Query: 375 SEIRRWLLEN 384
           + +R  L E 
Sbjct: 320 TALRTLLTEK 329


>gi|75907549|ref|YP_321845.1| hypothetical protein Ava_1326 [Anabaena variabilis ATCC 29413]
 gi|75701274|gb|ABA20950.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 1321

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 48/178 (26%), Gaps = 45/178 (25%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG--------------------S 168
           KA    K  K  +G E+   ++ D   +   E LI   G                     
Sbjct: 469 KANDRAKYLKEVAGCEISGKSLTDLKQATTAEDLIAALGRKISPQTPTLLPVGSLYLQPG 528

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224
           E    +    TPR +        L P      E P   +     + D   G+G FL +A 
Sbjct: 529 EERRRSGTHYTPRALTEPIVKETLRPVLEALGERPTPEQILALKVCDLAVGSGAFLVEAC 588

Query: 225 NHVADCGSHHKIPPILV---------------------PHGQELEPETHAVCVAGMLI 261
             +A+          ++                      +G +  P    +    + +
Sbjct: 589 RQLAEKLVEAWNQHGMISEVPSDEEPLLYGRRLVAQRCLYGVDKNPFAVNLAKLSLWL 646


>gi|307709886|ref|ZP_07646334.1| hypothetical protein SMSK564_1216 [Streptococcus mitis SK564]
 gi|307619376|gb|EFN98504.1| hypothetical protein SMSK564_1216 [Streptococcus mitis SK564]
          Length = 317

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSYLLTSPQSDL----LKGWLKEEASLTAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ASAKQSKTIFILQKK 280


>gi|229019865|ref|ZP_04176666.1| hypothetical protein bcere0030_43650 [Bacillus cereus AH1273]
 gi|228741472|gb|EEL91671.1| hypothetical protein bcere0030_43650 [Bacillus cereus AH1273]
          Length = 244

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 45/249 (18%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    A   MTP  V    + L         +       T+ DP  GTG  +T   N   
Sbjct: 2   KEGVQANHEMTPDAVGMFMSYLFHKFMQGQKEI------TVLDPAIGTGNLMTTIFNGAK 55

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKNIQQGSTLSKDL 286
           +  +       +   G E++     + +    +    +E   +  L+             
Sbjct: 56  EELA-------MSGFGVEVDEVLIKLALVNANLQKHAIEFFHQDGLAPLYI--------- 99

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                    +S+ P G             +   E+G     L      S    + +   +
Sbjct: 100 ---DPVDAVVSDLPIG-------------YYPNEIGASEYTLKANEGMSYAHHLFIEQSV 143

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     GG    ++ +    + +A    + I+    E   I+ ++ LP  +F     A  
Sbjct: 144 KHTKE-GGYLFFLVPNFIFESDQAPKLHAFIK----ETCFIQGLLQLPVSMFKNEKNAKS 198

Query: 407 LWILSNRKT 415
           +++L  +  
Sbjct: 199 IFVLQKKGP 207


>gi|238855009|ref|ZP_04645338.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
 gi|238832380|gb|EEQ24688.1| conserved hypothetical protein [Lactobacillus jensenii 269-3]
          Length = 375

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +   F + + ++           K    ++L    V        +E  +        +  
Sbjct: 15  QHIQFENYLRKIVFDPEKRNDFFKQL--LKLDAQCVVQDTFKQYFEEYVAE-----RKAN 67

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKES------PGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +   TP +V  L + ++    +A FK             T  D T GTG  L       A
Sbjct: 68  QQDYTPDEVSKLLSIIVNTKYNADFKNDIEKRYFHKKGYTAADITAGTGSLLIQ--KWWA 125

Query: 229 DCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  +      +P        EL        +  + +R + +    
Sbjct: 126 DMTAELPWTYVPHRYFYFASELADNVIPYLLCNLALRGMNAIVVH 170


>gi|259907149|ref|YP_002647505.1| hypothetical protein EpC_04680 [Erwinia pyrifoliae Ep1/96]
 gi|259909633|ref|YP_002649989.1| putative phage-related protein [Erwinia pyrifoliae Ep1/96]
 gi|224962771|emb|CAX54226.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|224965255|emb|CAX56787.1| putative phage-related protein [Erwinia pyrifoliae Ep1/96]
 gi|261863678|gb|ACY01289.1| unknown [Erwinia pyrifoliae]
 gi|283476953|emb|CAY72837.1| hypothetical protein EPYR_00489 [Erwinia pyrifoliae DSM 12163]
 gi|283479712|emb|CAY75628.1| hypothetical protein EPYR_03248 [Erwinia pyrifoliae DSM 12163]
          Length = 241

 Score = 41.7 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +  P   +  ++  L         +    F TP  V  +   L L   +  F++ P +
Sbjct: 88  GLEESPGDFLGRVFMLL-----ELGDKYRGQFFTPWSVGVMMAQLQLGNVEEQFRDKPFI 142

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             TL +PTCG G       + + + G   H ++         +++P    +    + +  
Sbjct: 143 --TLSEPTCGAGCMALAFASVLREVGFPPHRRMWVSAT----DIDPLAAGMAYIQLSLCG 196

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF 287
           +  +     + + ++   L   + 
Sbjct: 197 VAGEVVIGNALSDERRRVLYTPMH 220


>gi|119487813|ref|ZP_01621322.1| hypothetical protein L8106_30065 [Lyngbya sp. PCC 8106]
 gi|119455646|gb|EAW36783.1| hypothetical protein L8106_30065 [Lyngbya sp. PCC 8106]
          Length = 1490

 Score = 41.7 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 170 VSEGAEDFMTPRDVVHLATA--LLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA 223
             + +  + TP   V       L    D+   K  P         + DP  G+G FL +A
Sbjct: 508 GRKSSGSYYTPHSFVRFLVRETLGAKIDECSPKHDPNPSAILKLKVLDPAMGSGHFLVEA 567

Query: 224 MNHVADC 230
              + D 
Sbjct: 568 CRFLGDQ 574


>gi|188527264|ref|YP_001909951.1| type II adenine specific methyltransferase [Helicobacter pylori
           Shi470]
 gi|188143504|gb|ACD47921.1| type II adenine specific methyltransferase [Helicobacter pylori
           Shi470]
          Length = 816

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKIEIDSKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQCFN 229


>gi|120609278|ref|YP_968956.1| type III restriction enzyme, res subunit [Acidovorax citrulli
            AAC00-1]
 gi|120587742|gb|ABM31182.1| type III restriction enzyme, res subunit [Acidovorax citrulli
            AAC00-1]
          Length = 1609

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 65/250 (26%), Gaps = 22/250 (8%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206
            D     ++ N+Y+         ++E      TP  VV              F +S     
Sbjct: 836  DKSKQDIIRNLYDTFFNNAFPRMAERLGIVYTPVQVVDFILHSANSALRKHFGQSLGNEG 895

Query: 207  RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL 264
              + DP  GTG F    +       S          H  E+    + +    +      +
Sbjct: 896  VHILDPFSGTGTFPVRLIQSGLINRSDLPRKFASELHANEIVLLAYYIATINIETAYHGV 955

Query: 265  --ESDPRRDLSKNIQQGSTLSKDLFT---------------GKRFHYCLSNPPFGKKWEK 307
              E  P   +        T   DL                  +     + NPP+  + E 
Sbjct: 956  MGEYLPFDGMVLTDTFQMTEDNDLVDKVVLPENNARVERQLAEPIRVIVGNPPYSAQQES 1015

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH--LANKLELPPNGGGRAAIVLSSSPL 365
            + D  +         R        S   ++  ++      +    N  G   IV   +  
Sbjct: 1016 ENDNNKNLAYPTLDDRIRQTYAAQSSAKLVKNLYDSYIRAIRWASNRIGERGIVAFVTNG 1075

Query: 366  FNGRAGSGES 375
                A + + 
Sbjct: 1076 SFLDANNMDG 1085


>gi|326475662|gb|EGD99671.1| RNA methylase [Trichophyton tonsurans CBS 112818]
          Length = 447

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 16/167 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E         ++      L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAVTCGSD--IDGRSFRGKEATSHIDTGVISNFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---- 320
            S      +         +  L + + F   + +PP+G +        + + + GE    
Sbjct: 271 LSRFLDTFTS-----DLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMF 325

Query: 321 -----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                  R     PK        L  + +         GR ++ + +
Sbjct: 326 QGVPSYKRENYIFPKRPYAFDAMLDDILDFAAQTLVVNGRISLWMPT 372


>gi|315042682|ref|XP_003170717.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma gypseum
           CBS 118893]
 gi|311344506|gb|EFR03709.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma gypseum
           CBS 118893]
          Length = 454

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG FL  A +  A               G+E   +T    +       L
Sbjct: 213 PGKLFYDPFVGTGSFLVAAAHFGAITCGSD--IDGRSFRGKEATSKTDTGVIGNFKQYGL 270

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            S      +         +  L   + F   + +PP+G +        + E + GEL  F
Sbjct: 271 LSKYLDTFTS-----DLTNTPLRDIRMFDGIICDPPYGVREGLRVLGHKDESRKGELMMF 325

Query: 325 G 325
            
Sbjct: 326 Q 326


>gi|149003812|ref|ZP_01828640.1| hypothetical protein CGSSp14BS69_03093 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758146|gb|EDK65149.1| hypothetical protein CGSSp14BS69_03093 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 202

 Score = 41.7 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 18/121 (14%)

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +S+ P G       DAV   H+                   L +      L+     
Sbjct: 63  DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LLMEQGLKYLK----S 108

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  +  S+ L + ++      ++ WL E   + A+++LP +LF     +  ++IL  
Sbjct: 109 DGYAIFLAPSNLLTSPQSD----LLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQK 164

Query: 413 R 413
           +
Sbjct: 165 K 165


>gi|83268881|gb|ABB99933.1| hypothetical protein pCT0012 [Listeria monocytogenes]
          Length = 1557

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 69/251 (27%), Gaps = 35/251 (13%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCG 215
             +Y+   +      +E      TP +VV      + D     F +S       + DP  G
Sbjct: 838  TLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTG 897

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM-----LIRR 263
            TG F+   + ++ +     +I         +   H  E+   ++ +    +      I  
Sbjct: 898  TGTFIVRTLTYLKEQMDAGEISLADITRKFMNELHANEIVLLSYYIAAINIEATFDEING 957

Query: 264  -------LESDPRRDLSKNIQQGSTLSKDLF----------TGKRFHYCLSNPPFGKKWE 306
                    E     D  ++ +   TL  D F             +    + NPP+     
Sbjct: 958  EEEGYVPFEGIVLTDTFESTETEDTLDDDYFGTNDERLKRQQDVQITAIIGNPPYSVGQS 1017

Query: 307  KDKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLS 361
               D  +         R        S  +         +           G G    V +
Sbjct: 1018 NANDDNKNVQYQKLNNRISETYALHSSATNKRNLYDDFIKAFRWTSDRLKGNGIIGFVSN 1077

Query: 362  SSPLFNGRAGS 372
            +S + +  A  
Sbjct: 1078 ASFINSQSADG 1088


>gi|78189569|ref|YP_379907.1| hypothetical protein Cag_1609 [Chlorobium chlorochromatii CaD3]
 gi|78171768|gb|ABB28864.1| hypothetical protein Cag_1609 [Chlorobium chlorochromatii CaD3]
          Length = 521

 Score = 41.7 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 76/255 (29%), Gaps = 59/255 (23%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                F TP  V     A + +  D            ++DP  G G F       +    
Sbjct: 21  RDKGQFWTPSWVAEAMVAYVTENTD-----------LVFDPATGRGAF----YEGLLKLN 65

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             +     +   G +++P              + SD   +      +     KD    ++
Sbjct: 66  KQN-----ISFLGTDIDP-------------DVLSDEIYNKENCFVENRDFIKD-PPNRK 106

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHK-------NGELGRFGPGLPKISDGSMLFLMHLAN 344
           F   ++NPP+ +    D+       K       N   GR G             +  L  
Sbjct: 107 FKAIVANPPYIRHHRIDEATKILLKKIAISITGNSIDGRAGYH-----------IYFLIQ 155

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFRTN 402
            L L    G  A I+ + +       G     +  W+ E   IE +V        F   +
Sbjct: 156 ALNLLEKDGKLAFIMPADTC-----EGKFAKNLWEWISEKFCIECVVTFDERATPFPNVD 210

Query: 403 IATYLWILSNRKTEE 417
               ++++ N K ++
Sbjct: 211 TNAIIFLIKNTKPQQ 225


>gi|308184259|ref|YP_003928392.1| type II adenine specific methyltransferase [Helicobacter pylori
           SJM180]
 gi|308060179|gb|ADO02075.1| type II adenine specific methyltransferase [Helicobacter pylori
           SJM180]
          Length = 545

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 84/258 (32%), Gaps = 36/258 (13%)

Query: 65  SNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           + I +E   ++   S  +   +   + L      + +    +SF D  +        +  
Sbjct: 4   NAIPIEEIARLVNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKY 63

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +  K    ++       +++  ++     + + YE       +        + TP  +
Sbjct: 64  ANKSLKGVHNHQEL-ILKYLQILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKI 119

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V     L   P D    ++        DP  G+G F+  A+              +   +
Sbjct: 120 VE---QLFTLPKDFDISQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIY 162

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPP 300
           G + +    A+              R     ++   + + KD    K   +F    +NPP
Sbjct: 163 GYDTDAFAIALTK-----------KRIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPP 211

Query: 301 FGKKWEKDKDAVEKEHKN 318
           +GKK+ +++    K+  N
Sbjct: 212 WGKKYNQNQKENFKQQFN 229


>gi|307322457|ref|ZP_07601810.1| N-6 DNA methylase [Sinorhizobium meliloti AK83]
 gi|306891889|gb|EFN22722.1| N-6 DNA methylase [Sinorhizobium meliloti AK83]
          Length = 679

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 78/242 (32%), Gaps = 53/242 (21%)

Query: 208 TLYDPTCGTGGFLTDAMNHVAD--CGSHHKIPPIL----------------VPHGQELEP 249
            + DP CG+G FL  A + +       + KI  +                    G ++  
Sbjct: 450 RIVDPACGSGVFLVTAFDFMKAEFTRVNDKIADLRGGARGLFDPDSEILTNNLFGVDVNA 509

Query: 250 ETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTLSKD------------------LFTGK 290
           E+  +    + ++        D L  N++ G +L +D                  +F   
Sbjct: 510 ESVEIAKLSLWVKTARRGKMLDSLDNNLKVGDSLIEDSNFAYLEHGFSWRTAFPQVFRDG 569

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L NPP+ +        + K  K     RF      +SD + L+       L+L  
Sbjct: 570 GFDIVLGNPPYVRM------ELLKAMKPYLEDRFEV----VSDRADLYAYFFERGLKLLK 619

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWI 409
            GG    I  ++       A      +RR+L     IE +V      +F        + +
Sbjct: 620 PGGRLGYISSATFFKTGSGAP-----LRRFLRRKATIEHVVDFGDLQIFDGVTTYPAVLV 674

Query: 410 LS 411
           + 
Sbjct: 675 MR 676


>gi|90968656|gb|ABE02417.1| BsrGI methyltransferase [Geobacillus stearothermophilus]
          Length = 648

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 79/250 (31%), Gaps = 22/250 (8%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +++             + ++       +  +  +YE +I R   ++     ++ TP    
Sbjct: 166 SKIFNLLQELNKFDEINNLQEFISIHNNDNIKQMYEIIIPR---QLRHALGEYYTP---D 219

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPH 243
            LA   + +  +   KE     +T  DPTCG+G FL   +  +    S  K+  I+    
Sbjct: 220 WLALYTIENVIELSKKEVEEFNKTYLDPTCGSGTFLFKTIQRLRK--SDIKLNKIIYSVR 277

Query: 244 GQELEPETHAVCVAGMLIRRLE--SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           G ++ P          LI  ++   D               S  L   K     ++N  +
Sbjct: 278 GFDVNPIAVLTAKTNYLISIIDLIKDKTVINLPVYNYDVINSPILKENKLLSVDINNVIY 337

Query: 302 GKKWEKDKDAVEKEHK-----------NGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
                  KD   K  K           N E         KI+  +   ++   +KL    
Sbjct: 338 NIPLSILKDEHFKTFKKILIQSLKSNLNPEEFYNLLLEQKINLKNKAEVIEFYSKLLNST 397

Query: 351 NGGGRAAIVL 360
           N   R  I  
Sbjct: 398 NIKIRLIIAY 407


>gi|323143062|ref|ZP_08077766.1| type I restriction modification DNA specificity domain protein
           [Succinatimonas hippei YIT 12066]
 gi|322417163|gb|EFY07793.1| type I restriction modification DNA specificity domain protein
           [Succinatimonas hippei YIT 12066]
          Length = 575

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 83/219 (37%), Gaps = 13/219 (5%)

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A+V+  +  +   +     + RR ++E+  ++A + LP      + + T + +   
Sbjct: 250 SGRFAVVVPVN--YGTASMHSFLQNRRTIVESGRLKATILLPGGFLVGSLVNTLILLFDK 307

Query: 413 RKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +    +  ++ LI+   D+       G++R  +N+  + Q++ +   + +   +  +D +
Sbjct: 308 KNANHQ--QISLIDLTKDVCLDKAKSGRQRIALNEYAKNQVIAVLQDK-SSDLALNVDIK 364

Query: 472 TFGYRRIKVL--RPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDILKPMMQ 524
                   ++  R +  + I   + L        +    +R  +   +       +    
Sbjct: 365 IIKNDEYNLMPNRYMAAAQINTTSDLGERAVKLADIANIYRAQASKKEETGSSYFEIGAA 424

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
            I   G  E   KE +   E+ TLK    K  I+  I  
Sbjct: 425 DINASGIVEQPTKEILIGKESSTLKNLVHKGDIILAIKG 463


>gi|320321569|gb|EFW77678.1| helicase domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 1592

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 56/221 (25%), Gaps = 49/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +++P  GTG F+               I         EL+P T  +         
Sbjct: 6   FPGGKIFEPAAGTGNFI---------GLMPEGIRKESQFTAVELDPLTAEIGK------- 49

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                             L   +     F  C++NPPFG +                   
Sbjct: 50  ------HLYPTATYLNRGLQDVVVPSGYFDACVANPPFGSQ-----------------SL 86

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           + P   ++S        +   K       GG   +V+S   L      +     R  + E
Sbjct: 87  YDPHHRELS--GYSIHNYFLAKSLDKLKPGGVMGVVVSRYFL-----DAANGRAREHIAE 139

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
                  + LP   F     T + T +         E   K
Sbjct: 140 QSHFLGAIRLPNTAFKENALTEVTTDIVFFQKAIPGEETDK 180


>gi|332882191|ref|ZP_08449821.1| hypothetical protein HMPREF9074_05619 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679814|gb|EGJ52781.1| hypothetical protein HMPREF9074_05619 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 1037

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 113/386 (29%), Gaps = 78/386 (20%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  + + YE  +  F  +V +    + TP  VV+     L       F    G+  
Sbjct: 293 KDATKDPIVHFYEDFLEAFDPQVRKALGVWYTPLPVVNFMVRTLDTLLKEQFHLPQGIAD 352

Query: 208 T---------------------------LYDPTCGTGGFLTDAMNHVADCGSHHK--IPP 238
           T                           + DP  GTG FL   + ++A      +     
Sbjct: 353 TSKIKVQTQQDNKVAGFDIEEKEYHRVQILDPATGTGTFLAQIIEYIAQQFKEQQGIWQN 412

Query: 239 ILVPH------GQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +  H      G EL   ++A+      ML+       +  ++++  +      +     
Sbjct: 413 YVQEHLLPRLNGFELLMASYAIAHLKLDMLL------SQTQITQSTNRIQIYLTNSLEEP 466

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNG-ELGRFGPGLPKISDGSMLFLMHLANKLELP 349
                L    +      + + ++++      +G         + GS  ++M+L    +  
Sbjct: 467 TPDRSLPLARWLSDEANEANRIKRDTPVMCVIGNPPYNGSSTNKGS--WIMNLMEDYKKE 524

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-- 407
           PN   + A        +               +E +                 I  Y+  
Sbjct: 525 PNTKNKLAERNPK---WINDDYVKFIRFGAHFIEKN--------------GNGILIYINP 567

Query: 408 -WILSNRKTEERRGKVQL----INATDLWTSIRNEGKKRRIINDDQRRQI-----LDIYV 457
              L N      R  +      I+  DL  + R +        D+    I     ++I+V
Sbjct: 568 HGFLDNPTFRGMRYHLLKTFDSIHTIDLHGNSRKKETTPNGETDENVFNIMQGVSINIFV 627

Query: 458 SRENGKFS---RMLDYRTFGYRRIKV 480
            + N K S   ++  Y  +G R  K+
Sbjct: 628 KKPNPKNSELAKVYHYDLYGKRTEKL 653


>gi|321156809|emb|CBW38793.1| putative conjugative transposon DNA recombination protein
           [Streptococcus pneumoniae]
          Length = 2091

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 491 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAIPRSIREKSE---------LYGVELDS 541

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 542 VTGAIAKQ---LHPNVHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 588

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 589 NY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 627

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  N      V LP   F     T + T L      + + 
Sbjct: 628 DN-----VLQEIKTNTHFLGGVRLPDTAFKSIAGTRVTTDLLFFQKDQAKN 673


>gi|313837684|gb|EFS75398.1| hypothetical protein HMPREF9621_00242 [Propionibacterium acnes
           HL037PA2]
 gi|314972623|gb|EFT16720.1| hypothetical protein HMPREF9622_00264 [Propionibacterium acnes
           HL037PA3]
          Length = 61

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 337 LFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           +F  H+   +         G R  +VLS SPLF+G+A  G+ +IRRW+
Sbjct: 1   MFFQHMLGHMSPVTEVSPQGSRVGVVLSGSPLFSGQASFGKRKIRRWM 48


>gi|315586445|gb|ADU40826.1| adenine specific DNA methyltransferase [Helicobacter pylori 35A]
          Length = 545

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGVHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLERLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDTSQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQQFN 229


>gi|198438381|ref|XP_002124830.1| PREDICTED: similar to rCG31986 [Ciona intestinalis]
          Length = 2242

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 21/241 (8%)

Query: 396  DLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            +LF    T+IAT++  L +         V  I    ++ +       R +I+    +   
Sbjct: 1742 NLFIGINTSIATFILELLDDPNLTAVNDVLKI----IFLAFPQYCLGRALIDMAINQAYA 1797

Query: 454  DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            D Y +     F    D+   G   + +     + FIL    L +    I   K+  L + 
Sbjct: 1798 DAYAAFGINSFKNPFDFDLVGRNLLAMAIEGVVFFILTV--LIQYRFFIKRDKVEDLSKI 1855

Query: 514  FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
                  +            +S V + ++      +  K      +  ++      P+ + 
Sbjct: 1856 PHNSSEEDDDVAAEKQRLLKSDVTDILRIKNLTKVYTKVGSKKRLLAVDRMCVGVPQGE- 1914

Query: 574  VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI-DKIFIDEKDKEIGRVG 632
                 G    +              I        +P   DA+I D+  +D   +     G
Sbjct: 1915 ---CFGLLGVNGAGKTTTFKMLTGDI--------APTAGDAWICDRSIMDNIREVQQNTG 1963

Query: 633  Y 633
            Y
Sbjct: 1964 Y 1964


>gi|169825485|ref|YP_001695660.1| putative helicase [Lysinibacillus sphaericus C3-41]
 gi|168994762|gb|ACA42301.1| putative helicase [Lysinibacillus sphaericus C3-41]
          Length = 998

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 114/402 (28%), Gaps = 81/402 (20%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  +       L           P     + D T G G F              +
Sbjct: 75  GQFFTPALLAKYLVECL----------KPTEYELIADLTSGMGSFF-------------N 111

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +P  L  +G E++ +   V                 L  +    +   +   +  +F  
Sbjct: 112 YLPNELNIYGNEIDLKAFKVSR--------------FLYPSANLTNQDIRYYKSEVQFDI 157

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPPF  +W                        +++D   +  ++   K       GG
Sbjct: 158 VLGNPPFNLQW------------------------QVNDNKYVSQLYYCIKAHEVLKAGG 193

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA---TYLWILS 411
             A+++  S L +     G       + +  + + +++   D F    +    T +    
Sbjct: 194 LMALIVPKSFLADDFTDGGMIAEIDHMFD-FIGQTLIS--KDAFSSLGVTSYETKIMFFQ 250

Query: 412 NRKTEERRGKVQ---LI---NATDLWTSIRNEGKKRRI-----INDDQRRQILDIYVSRE 460
            R    ++   +    I   +A+D+  +I    K +       I  + RR +   Y  ++
Sbjct: 251 KRSEHLQQRPYKSNEFISVSDASDIHENIIKPVKHQLEAVRAKIQLENRRSLNSEYEYKK 310

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           N     + D +     +      L  +  L          D  W++           + +
Sbjct: 311 NKL---LFDIKRNPKLQKHYANCLAYAERLHTQEKPNNMDDKEWQQKKVTENRVISYLKQ 367

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
            + +Q          + ++    + K       K      ++
Sbjct: 368 ALQKQHRTEETRTMTLVKTKYGLQYKAYTPNDKKQLKALNLS 409


>gi|77404497|ref|YP_345073.1| hypothetical protein pREC1_0012 [Rhodococcus erythropolis PR4]
 gi|77019878|dbj|BAE46253.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 2936

 Score = 41.3 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 36/165 (21%)

Query: 258  GMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKWEKDKDA 311
             M+   +E +P      +    S   ++          + F   + N PFGK    D   
Sbjct: 1107 NMV--GVEIEPISAQIAHQLYPSQQIRNHGFERAFAPDETFSGAIGNVPFGKHGVPD--- 1161

Query: 312  VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                                +DG  L    +   L L   GG  A +           + 
Sbjct: 1162 ----------------PIHNADGHSLHNQFILKSLALTAPGGYVAVVT------SAYTSD 1199

Query: 372  SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            +   ++R+ +  +  +   V LPT  F    +T + T + I   R
Sbjct: 1200 ARRPDVRKKITADADLVGAVRLPTGAFDRQAKTAVVTDVLIFRRR 1244


>gi|313115520|ref|ZP_07800982.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622161|gb|EFQ05654.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1139

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 68/257 (26%), Gaps = 70/257 (27%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +  S       T   V+               +        + +P+ G G F     
Sbjct: 499 EYAAARSSTLNAHYTSPTVIR--------GIYDAVERMGFRSGNILEPSMGVGNFF---- 546

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279
                 G           +G EL+  T  +       A + +   E+  RRD        
Sbjct: 547 ------GMLPDSMAGSRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 593

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                       +   + N PFG+    DK             + G  +           
Sbjct: 594 ------------YDLAVGNVPFGQYKVNDKA----------YNKLGFSIHN--------- 622

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K       GG  A V            S +S  R+ + E   +   + LP + F 
Sbjct: 623 -YFFAKAIDQVRPGGIVAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 676

Query: 399 --FRTNIATYLWILSNR 413
               T++ + +  L  R
Sbjct: 677 ANAGTDVVSDIIFLQKR 693


>gi|298245670|ref|ZP_06969476.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
 gi|297553151|gb|EFH87016.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
          Length = 579

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 80/279 (28%), Gaps = 50/279 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE           +    F TP     L   +L         E       + DP CG G 
Sbjct: 10  YE---SSLAPTERKTRGHFSTPP---RLVEQILDAC--GFSPERNLTQLRVLDPACGGGN 61

Query: 219 FLTDAMNHVADCGSHHKIPPILVPH-------GQELEPETHAVCVAGML-------IRRL 264
           FLT  ++ +      + +              G + +P    +    +        ++ L
Sbjct: 62  FLTAVLHRLVLSAEANGLSQRQTLSRVQQNIWGFDPDPVACFMAEMHLREALTTYTLQSL 121

Query: 265 ESDPRRDLSKNIQQGSTLSKDL---FTGKRF---HYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +   R  L  +I Q   L+         KR       L+NPP+      D  A       
Sbjct: 122 QH--RSSLPLHIHQADALTFPWGQALAEKRHADIDLFLANPPYLAAKNTDLSAY------ 173

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R   G    SD      +   +        GG   +VL    L    A S     R
Sbjct: 174 ----RQARGHQGQSD----SYLLFLDLALRLVRPGGWIGLVLPDPVLARTNAASE----R 221

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           + LL    I  +  L + +F    +   + +   R  + 
Sbjct: 222 QALLRETTIHQLWHL-SGVFSAF-VGAVVIVAQKRLPKR 258


>gi|256419629|ref|YP_003120282.1| hypothetical protein Cpin_0583 [Chitinophaga pinensis DSM 2588]
 gi|256034537|gb|ACU58081.1| hypothetical protein Cpin_0583 [Chitinophaga pinensis DSM 2588]
          Length = 882

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 118/395 (29%), Gaps = 65/395 (16%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L   +   +  S  AS  +  +  F +  D  S I    +  LL  I +    I    D 
Sbjct: 56  LKIDSEYASYRSAFASEFELIQQRFPELMDIFSLIESQIRTELLINIFEKLDAIYQEEDG 115

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-----------ATALLLDPDDAL 198
             D ++S  Y++L R       +             L               ++    + 
Sbjct: 116 DLDDIISWSYQYLKRDLEKAAFKKVGQDNVKIKNSDLLFTTQFFTDKYMVKYIVTQALSG 175

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPIL---VPHGQELE 248
           FK +      L D   G G FLT   N +           S+  I  +L      G +L+
Sbjct: 176 FKGARIRDVVLIDCASGGGNFLTYGFNILFRLYQQTFPSWSNQAIVDVLLQEAITGYDLD 235

Query: 249 PETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLF-------------------- 287
                +    + ++  + + P    + NI  G       F                    
Sbjct: 236 NNLSKIAALSLFVKASIYAIPSPATTINIYGGQADDNLGFLNPDIISDTIGALTFRTRLD 295

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +    L+NPPF  K + D        KN             S G +        
Sbjct: 296 KIDKAGKIKVFLTNPPFMGKRDMDTSLKNYLQKN----------IPESKGDLCV--SFIQ 343

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
           ++    NG  R  +V  ++ L+     S  S+ R+  LE + +   V L ++ F      
Sbjct: 344 RIIQEMNGHDRLGVVSQNNWLYL----SSFSDFRKMFLEKETLIECVDLGSNAFEDIKGE 399

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            T + +     + ++       N  +L    + + 
Sbjct: 400 KTNIALFIIGDSSDKT--THFYNLKNLSYHEKKKM 432


>gi|317009100|gb|ADU79680.1| type II adenine specific methyltransferase [Helicobacter pylori
           India7]
          Length = 545

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 81/251 (32%), Gaps = 30/251 (11%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLVNVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       +++  ++     +   YE       +        + TP  +V   
Sbjct: 68  LKGVHNHQEL-ILKYLKILENSSDLEKLGYSYEE---ELSNTTRNLEGIYYTPNQIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++        DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +    A+       +R++     D     Q+     K      +F    +NPP+GKK+ +
Sbjct: 167 DAFAIALTK-----KRIKERYHLDCLNIAQKDFLNLKHTP---QFDCIFTNPPWGKKYNQ 218

Query: 308 DKDAVEKEHKN 318
           ++    K+  N
Sbjct: 219 NQKENFKQQFN 229


>gi|325912406|ref|ZP_08174801.1| hypothetical protein HMPREF0522_1080 [Lactobacillus iners UPII
           143-D]
 gi|325475748|gb|EGC78919.1| hypothetical protein HMPREF0522_1080 [Lactobacillus iners UPII
           143-D]
          Length = 472

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 27/214 (12%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN-HVADCGSHH 234
              TP D+V+          D +        +   + +CG G  L +A+  ++ DC S  
Sbjct: 7   QVFTPIDIVNKML-------DEVGYTKNLYGKKFLENSCGDGRILCEAIKRYIHDCKSFD 59

Query: 235 KIPPILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                ++        G E   + +  CV   +   L S    +++ NI     L  +L  
Sbjct: 60  MNDNAIISGIESDFTGVEYNFDNYKKCV-DSITSLLNSYGYYNVNLNIVNLDFL--NLEF 116

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F Y + NPP+             + KN E  R      K       +      K   
Sbjct: 117 NEKFDYIVGNPPYISY-------ANIDIKNREFVRKKFDSCKKGKFDYCY--PFIEKSLK 167

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
             +  G  A ++ ++ ++    G    +I +  +
Sbjct: 168 LLSKNGEIAYLIPTN-IYKNVFGKELRKIIKDPV 200


>gi|94992069|ref|YP_600168.1| phage protein [Streptococcus phage 2096.1]
 gi|94545577|gb|ABF35624.1| phage protein [Streptococcus phage 2096.1]
          Length = 233

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K  + I    D+  D     +       Y+  ++ F  E +  +
Sbjct: 27  DEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRK 86

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCG 231
             +   TP+ V  L + ++                  Y+   GTGG L  A      +  
Sbjct: 87  NKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLNDS 133

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P     H +EL  +     +  M IR +        S   Q
Sbjct: 134 PFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 179


>gi|289167099|ref|YP_003445366.1| hypothetical protein smi_0213 [Streptococcus mitis B6]
 gi|288906664|emb|CBJ21498.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 317

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LFKE    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFKEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+          +    + +   
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVALRHQ----------VASSQEHTYAH 210

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            + +   L+   + G   AI L+ S L     G     ++ WL E+  + A+++LP +LF
Sbjct: 211 HLLMEQGLKYLKSDG--YAIFLAPSDLLTSPQG---DLLKGWLKEDATLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ASAKQSKTIFILQKK 280


>gi|238756192|ref|ZP_04617511.1| Type II restriction enzyme [Yersinia ruckeri ATCC 29473]
 gi|238705607|gb|EEP98005.1| Type II restriction enzyme [Yersinia ruckeri ATCC 29473]
          Length = 1224

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 28/176 (15%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +++   ++NPP+                NGEL  F       S   +  +F+ H  
Sbjct: 499 WILAQKYDAVVANPPYMGGKGM----------NGELKEFAKKQFPDSKSDLFAMFMQHAF 548

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A V   S +F     S    +R WLL+N     +  L    F + + 
Sbjct: 549 SLLK----ENGFNAQVNMQSWMFL----SSYEALRSWLLDNKTFVTMAHLGPRAFGQISG 600

Query: 403 --IATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRI--INDDQRRQI 452
             + T  W+++N      +  V    I+  +         +K R   I  +  ++I
Sbjct: 601 EVVQTTAWVINNNHVAYYQ-PVFFRLIDGNEENKQAMLLERKHRFDSIVQNNFKKI 655


>gi|317180649|dbj|BAJ58435.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F32]
          Length = 545

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 35/216 (16%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           SF D  +        +    +  K    ++       +++  ++     + + YE     
Sbjct: 46  SFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILENSSDLEKLGSYYEE---E 101

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             +        + TP  +V     L   P D    ++        DP  G+G F+  A+ 
Sbjct: 102 LSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALK 153

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                        +   +G + +    A+              R     ++   + + KD
Sbjct: 154 L---------GFKVENIYGYDTDAFAIALTK-----------KRIKERYHLDCPNIMQKD 193

Query: 286 LFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
               K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 194 FLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQQFN 229


>gi|257470287|ref|ZP_05634378.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064498|ref|ZP_07928983.1| adenine-specific DNA methylase [Fusobacterium ulcerans ATCC 49185]
 gi|313690174|gb|EFS27009.1| adenine-specific DNA methylase [Fusobacterium ulcerans ATCC 49185]
          Length = 477

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP------HGQELEPETHAV 254
           +     + + + +CG G  L   +N   +     K    +        +G EL+ E ++ 
Sbjct: 32  KKNLFGKKILENSCGDGEILKVIVNKYINSLLKMKTLDEIKFGLENDIYGIELDKEHYST 91

Query: 255 CVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           C+  + +I    +   R+++  +   + L K+    K+F Y + NPP+   ++   D + 
Sbjct: 92  CLKNLDMIAG--TYGIRNVNWKVFNENALKKEW--DKKFDYIIGNPPY-ISYKDINDTIR 146

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           KE K                G   +      +     +  G+   ++ +S          
Sbjct: 147 KELKEKYTS--------CKKGKFDYYYAFIEESLNCLSSFGKFVYLIPNSIF----KNEF 194

Query: 374 ESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEE 417
             E+R+ +L    +  IV   +  +F   +  + + I   RK ++
Sbjct: 195 GEELRKIILP--SLSKIVDYKSHKIFKNVSTTSAILICDKRKKKK 237


>gi|256833003|ref|YP_003161730.1| modification methylase, HemK family [Jonesia denitrificans DSM
           20603]
 gi|256686534|gb|ACV09427.1| modification methylase, HemK family [Jonesia denitrificans DSM
           20603]
          Length = 318

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 42/155 (27%), Gaps = 25/155 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F     E       PR    L     +     +       +  + D   G+G     
Sbjct: 96  IAYFRRLSLEVGAGVFIPRPETELLAEHAITEAHRIAANGTQPV--VVDLCTGSGAIALA 153

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               V          P    +  EL+   +              + R     ++ QG   
Sbjct: 154 IATEV----------PSAQVYAVELDQGAYTWATRN--------NHRYADPVHLTQGDAR 195

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +       R    +SNPP+        DA+ ++H+
Sbjct: 196 TALSHMAARVDIVVSNPPYIPS-----DAIPRDHE 225


>gi|192289768|ref|YP_001990373.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Rhodopseudomonas palustris TIE-1]
 gi|192283517|gb|ACE99897.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Rhodopseudomonas palustris TIE-1]
          Length = 340

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +        D  D    ++P  I  + D   G+G     A           
Sbjct: 144 ERVIVPRSYIGELLDSHFDGGDTSLIDAPEAIERVLDLCTGSGCLAILAA---------- 193

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P       +L  +  AV    +   RL+             G     D    +R+  
Sbjct: 194 YAFPNATVDAVDLSKDALAVATRNVAEHRLDDRVSL------YHGDLF--DPLGDERYDL 245

Query: 295 CLSNPPF 301
            ++NPP+
Sbjct: 246 IITNPPY 252


>gi|289434862|ref|YP_003464734.1| N-6 DNA methylase domain protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171106|emb|CBH27648.1| N-6 DNA methylase domain protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 336

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 53/321 (16%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K + +  + SS      +        +NFS  E+        +              +  
Sbjct: 42  KEVLQKEELSSEKQTKLEEYYGSLELENFSNEEIRKGLQLALLKGM-----------KHG 90

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 MTP  +  +   LL                ++ DP CGT   LT  +N +    
Sbjct: 91  IQVNHQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL---- 140

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGK 290
              K    +   G +++    ++ + G  ++R + +   +D   N+              
Sbjct: 141 -ELKDGVEIHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVVSDLPV 199

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F                    ++  K+ EL R        S    LF+       +   
Sbjct: 200 GF-----------------YPDDENAKSFELCR----EEGHSFAHFLFIEQGMRYTKP-- 236

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG    ++  +          +  I++    N  IE I+ LP  LF        + IL
Sbjct: 237 --GGYLFFLVPDAMFGTSDFAKVDKFIKK----NGHIEGIIKLPETLFKSEQARKSILIL 290

Query: 411 SN-RKTEERRGKVQLINATDL 430
               +  +   +V L N + L
Sbjct: 291 RKAAENVKPPKEVLLANLSSL 311


>gi|158422529|ref|YP_001523821.1| putative O-methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158329418|dbj|BAF86903.1| putative O-methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 235

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 23/161 (14%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           R + D   G G      +  + +  +H            EL+P T A+         +  
Sbjct: 27  RRIVDLGAGVGTAGLAVLVRLREASAHL----------VELDPATAALARQNAAGNGMSD 76

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +     G          +     ++NPPF  +           H+     R   
Sbjct: 77  RCAIVEADVRTLGKPAGPAEPAAQAADLVIANPPFNARAA---------HQTSPHARRAT 127

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                 +  M +++     L+     GG+  ++L  + L  
Sbjct: 128 AHMADGETLMDWVLAAYRCLKP----GGQVGLILRPADLAT 164


>gi|224542975|ref|ZP_03683514.1| hypothetical protein CATMIT_02169 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524113|gb|EEF93218.1| hypothetical protein CATMIT_02169 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 14/140 (10%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
              +    +   D  +  IY  L     S  +     F TP  V  +   + L   D   
Sbjct: 65  LGRLSFLLENGLDDYLGKIYMEL-----STGNSHTGQFFTPFHVCEMMAGVALADYDG-- 117

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    L +P+ G G  +      +   G  +    +L    Q+L+ +   +    +
Sbjct: 118 -----ETEYLNEPSSGGGANILAYAKVMKAKG--YNYQRLLEVKAQDLDYKCVYMTYVQL 170

Query: 260 LIRRLESDPRRDLSKNIQQG 279
            +  + ++  +  S   +  
Sbjct: 171 SLAGVNAEVVQGNSLEGKHN 190


>gi|322691082|ref|YP_004220652.1| hypothetical protein BLLJ_0892 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455938|dbj|BAJ66560.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 932

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 72/263 (27%), Gaps = 60/263 (22%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRF 166
                 F   D      R++   L  ++      I        +   +  ++ E  +   
Sbjct: 258 PEPLKAFPYVDGGLFADRIDVPPLTGELRDALLEISEGFDWSGISPVIFGSLMEETLSH- 316

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-------------------ESPGMIR 207
             E  +G   + + +++  L   L LD   A  +                          
Sbjct: 317 -DERRKGGMHYTSVKNIHRLIDPLFLDGLKAELEGAEARPVAGGSRTNALNKLHDKIAGL 375

Query: 208 TLYDPTCGTGGFLTDAMNHVA------------------DCGSHHK--IPPILVPHGQEL 247
              DP CG+G FLT+    +                   D G         I   HG E+
Sbjct: 376 RFLDPACGSGNFLTETYLELRRIENRILADLDKDGQLALDLGDDINPVKVSISHFHGIEI 435

Query: 248 EPETHAVCVAGMLIR-------------RLESDPRRDLSKNIQQGSTLSKDL---FTGKR 291
                AV    + I               L   P  D + +IQQG+ L  D      G  
Sbjct: 436 NGFACAVARTALWIAEQQALDDTESTISGLPRLPFTD-TAHIQQGNALRLDWNELLPGDH 494

Query: 292 FHYCLSNPPFGKKWEKDKDAVEK 314
             Y + NPPF     K     + 
Sbjct: 495 CDYVMGNPPFIGHVTKTAGQTDD 517


>gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300685429|gb|ADK28351.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
            FRC41]
          Length = 1621

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 86/326 (26%), Gaps = 55/326 (16%)

Query: 144  ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES- 202
            E+   +   +V+  +YE   ++   + ++      TP ++V        D     F    
Sbjct: 824  EVSSASGKQQVIKELYERFFQKAFKKQADSLGIVYTPVEIVDFILRAADDVSRRHFGRGL 883

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL--------------- 247
                  + DP  GT  F    +          +   +   +  E+               
Sbjct: 884  SDEGVCILDPFAGTSTFTVRLL-----QSGLIRPEDLARKYANEIFVTEIMLLAYYVSAV 938

Query: 248  -EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----------------KDLFTGK 290
                T+    A    R  E +P     KNI    T                   D    +
Sbjct: 939  NIETTYNALRAEAAQRGGEPEPEYVPFKNIALADTFQIHEDGDIPDLNIFRENNDTIERQ 998

Query: 291  RF---HYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +    +  + NPP+  G+K   D +A  K                 +             
Sbjct: 999  KAAPINVVIGNPPYSAGQKSANDLNANLKYPSLDARIAETYAAKSTATNKNSLYDSYLRA 1058

Query: 346  LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-------- 397
                 +  G   +V   S        +G+  +R  + E+     +  L  ++        
Sbjct: 1059 FRWATDRIGDQGVVAFVSNGGWIDGNTGDG-VRLSMAEDFTDLYVFNLRGNMRNSDWRSE 1117

Query: 398  ---FFRTNIATYLWILSNRKTEERRG 420
                F     T + I    K   R+G
Sbjct: 1118 GGQIFGAGSQTTIAIFVAVKDSSRKG 1143


>gi|302205704|gb|ADL10046.1| DNA or RNA helicase of superfamily II [Corynebacterium
            pseudotuberculosis C231]
 gi|308275940|gb|ADO25839.1| DNA or RNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1648

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 86/326 (26%), Gaps = 55/326 (16%)

Query: 144  ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES- 202
            E+   +   +V+  +YE   ++   + ++      TP ++V        D     F    
Sbjct: 851  EVSSASGKQQVIKELYERFFQKAFKKQADSLGIVYTPVEIVDFILRAADDVSRRHFGRGL 910

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL--------------- 247
                  + DP  GT  F    +          +   +   +  E+               
Sbjct: 911  SDEGVCILDPFAGTSTFTVRLL-----QSGLIRPEDLARKYANEIFVTEIMLLAYYVSAV 965

Query: 248  -EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----------------KDLFTGK 290
                T+    A    R  E +P     KNI    T                   D    +
Sbjct: 966  NIETTYNALRAEAAQRGGEPEPEYVPFKNIALADTFQIHEDGDIPDLNIFRENNDTIERQ 1025

Query: 291  RF---HYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +    +  + NPP+  G+K   D +A  K                 +             
Sbjct: 1026 KAAPINVVIGNPPYSAGQKSANDLNANLKYPSLDARIAETYAAKSTATNKNSLYDSYLRA 1085

Query: 346  LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-------- 397
                 +  G   +V   S        +G+  +R  + E+     +  L  ++        
Sbjct: 1086 FRWATDRIGDQGVVAFVSNGGWIDGNTGDG-VRLSMAEDFTDLYVFNLRGNMRNSDWRSE 1144

Query: 398  ---FFRTNIATYLWILSNRKTEERRG 420
                F     T + I    K   R+G
Sbjct: 1145 GGQIFGAGSQTTIAIFVAVKDSSRKG 1170


>gi|261837885|gb|ACX97651.1| adenine methyltransferase [Helicobacter pylori 51]
          Length = 545

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGVHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDTSQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVKNIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQRFN 229


>gi|168206971|ref|ZP_02632976.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
 gi|170661641|gb|EDT14324.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
          Length = 1975

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 71/253 (28%), Gaps = 59/253 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S  +       TP+ V+      L                 + +P+ G G F +  
Sbjct: 464 EEYESARASTLNAHYTPKVVIDSIYKAL--------NRFGFREGNILEPSMGIGHFFSR- 514

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D  S+ K       +G EL+  +  +         +E     + +          
Sbjct: 515 ---LPDSMSNSK------LYGVELDDISGRISKQLYQNASIEIKGYEETT---------- 555

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F+   F   + N PFG     DKD                     +  + L   +  
Sbjct: 556 ---FSNNFFDVAIGNIPFGDYKVFDKDF--------------------NKNNFLIHDYFF 592

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K        G  A V S   +    +      +R +L E       + LP + F     
Sbjct: 593 AKTLDKLKENGIVAFVTSKGTMDKANSS-----VREYLSERADFIGAIRLPKNTFKSSAN 647

Query: 401 TNIATYLWILSNR 413
           T + T +  L  +
Sbjct: 648 TEVTTDIIFLQKK 660


>gi|262067751|ref|ZP_06027363.1| N-6 DNA Methylase family protein [Fusobacterium periodonticum ATCC
           33693]
 gi|291378477|gb|EFE85995.1| N-6 DNA Methylase family protein [Fusobacterium periodonticum ATCC
           33693]
          Length = 329

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 88/302 (29%), Gaps = 67/302 (22%)

Query: 181 RDVVHLATALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMNHVADCGSHH 234
           R+V       +   +   +              T++D   G+G                 
Sbjct: 9   REVSKKLAEYITGTELRKYVAKKVKQYVDLENPTVFDGAVGSGQL--------------E 54

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +     + +G +++  +                          +  +  +          
Sbjct: 55  QFVNPSILYGVDVQESSINSARQN-------------FQNTELEVKSFFEYERENFEVDC 101

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  K+   KD  E+E KN +          + D            L+       
Sbjct: 102 VIMNPPFSLKF---KDLSEQEQKNIQKQFSWKKSGVVDD---------IFVLKSLEYTKR 149

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L     +          I   L E ++I       ++ F  T+I     ++   K
Sbjct: 150 YAFYILFPGVGYRKTEEKFRELIGNRLAELNVI-------SNAFTDTSIDVLFLVVDKNK 202

Query: 415 TEE---------RRGKVQL-----INATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T E         +  K+ +     ++A++  W  IR E +   +  +   RQI D+++ R
Sbjct: 203 TTEAVYRELYDCKIDKIIISDGWKLDASEYRWEQIREEKEVEEVDINALNRQITDLWIGR 262

Query: 460 EN 461
             
Sbjct: 263 VE 264


>gi|1536938|emb|CAA67873.1| methylase [Rhizobium leguminosarum]
          Length = 600

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 65/217 (29%), Gaps = 32/217 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP     L   L+    +A           + DP CG G FL      +       
Sbjct: 129 GAFYTPPA---LTARLMELAQEAGID---WRAARVLDPACGGGAFLLPVALRMQQALQAL 182

Query: 235 KIPPIL-----VPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +L        G +++P    +      +    L     R     I+  ++L + + 
Sbjct: 183 SPGELLDHFAGHLSGFDIDPFAAQLTQTWLEIAFASLSMQTGRPFPAVIRVCNSLEQPV- 241

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           + KRF   + NPP+G+        V    +  E  R          G    L        
Sbjct: 242 SSKRFDLVIGNPPYGR--------VRLNARLRERYRRSLFGHANMYGLFTDLAL------ 287

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                GG  A V  +  L    AG     +R  L ++
Sbjct: 288 QWARKGGVVAYVTPTGFL----AGEYFKALRALLAKD 320


>gi|16767739|ref|NP_463354.1| type II restriction enzyme methylase subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167991283|ref|ZP_02572382.1| type II restriction enzyme [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|16423060|gb|AAL23313.1| putative type II restriction enzyme, methylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205330405|gb|EDZ17169.1| type II restriction enzyme [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261249581|emb|CBG27449.1| type II restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996839|gb|ACY91724.1| putative type II restriction enzyme methylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|312915591|dbj|BAJ39565.1| putative type II restriction enzyme methylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|332991303|gb|AEF10286.1| putative type II restriction enzyme methylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 1225

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 28/176 (15%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+                N EL  F       S   +  +F+ +  
Sbjct: 497 WILAQRYDAVVANPPYMGGKGM----------NSELKEFAKNNFPDSKADLFAMFMQNAF 546

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A V   S +F     S    +R WLL+N     +  L    F + + 
Sbjct: 547 SLLK----ENGFNAQVNMQSWMFL----SSYEALRNWLLDNKTFITMAHLGARAFGQISG 598

Query: 403 --IATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRI--INDDQRRQI 452
             + T  W++ N+ + ER   V    I+  +         +K           + I
Sbjct: 599 EVVQTTAWVIKNQHS-ERYQPVFFRLIDGREEVKKSDLLLRKNIFDKFTQHDFKNI 653


>gi|307566479|ref|ZP_07628911.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307344823|gb|EFN90228.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 524

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 39/217 (17%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  G G F+   +               +     EL   T         +  
Sbjct: 28  KPHDLILEPCGGDGVFIDKILE----------NTQNVQISVFELNSST---------VAG 68

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           L+S        +I++  TL         +R+   + NPP+G +          EHK   L
Sbjct: 69  LKSKYSMKSCVSIKETDTLLDKAILECSQRYDKIIGNPPYGAR--------SDEHKKALL 120

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            +  P L    +   LFL      L+      G    ++ ++ L   R       IR++L
Sbjct: 121 NKLYPDLY-TKESYTLFLYACTRCLK----ENGELCFIVPNTFLSLHR----HLSIRKFL 171

Query: 382 LENDLIEAIVALPTDLFFRTNIA-TYLWILSNRKTEE 417
           L N  I+ +   P+  F   N     L I++  K+ +
Sbjct: 172 LTNTKIKELALFPSSFFPGVNFGYANLCIITLEKSSD 208


>gi|301160977|emb|CBW20512.1| type II restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132831|gb|ADX20261.1| putative type II restriction enzyme methylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 1225

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 28/176 (15%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+                N EL  F       S   +  +F+ +  
Sbjct: 497 WILAQRYDAVVANPPYMGGKGM----------NSELKEFAKNNFPDSKADLFAMFMQNAF 546

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A V   S +F     S    +R WLL+N     +  L    F + + 
Sbjct: 547 SLLK----ENGFNAQVNMQSWMFL----SSYEALRNWLLDNKTFITMAHLGARAFGQISG 598

Query: 403 --IATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRI--INDDQRRQI 452
             + T  W++ N+ + ER   V    I+  +         +K           + I
Sbjct: 599 EVVQTTAWVIKNQHS-ERYQPVFFRLIDGREEVKKSDLLLRKNIFDKFTQHDFKNI 653


>gi|307701270|ref|ZP_07638291.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307613431|gb|EFN92679.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 933

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 80/297 (26%), Gaps = 69/297 (23%)

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST-----NTRNNLESYIASFSDNAKAIFEDFDFS 121
            + + F +    +      Y L  L        + R+  +  + +F      +F D    
Sbjct: 223 FEKDGFYRYLKEAAPGDIRYRLQRLFKALDTPLDQRDPFDESLRNFPYVNGGLFTD---- 278

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP- 180
            T        +   +    SG  +    +   +   I+E  +       S+G   + +P 
Sbjct: 279 ETEIPPFTPEMKDLLLNEISG-PVDWSQISPTIFGGIFESTL--NPETRSQGGMHYTSPE 335

Query: 181 --RDVVH------LATALLLDPDDALFKESPGMIR-----------TLYDPTCGTGGFLT 221
               V+       L   L    +           R              DP  G+G FLT
Sbjct: 336 NIHKVIDPLFLDDLKAELAAVEETPGLTPRQKTNRYKDFHHKLCSLKFLDPASGSGNFLT 395

Query: 222 --------------------DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                                A   + +  +  +   +   +G E+      V  A + I
Sbjct: 396 ETYLQLRHLENQVLFKLQSGQAAMALGEDQATGQRVSLSQFYGIEINEFAVKVAEAALWI 455

Query: 262 RRL--ESDPRRDLSKNIQQG---------------STLSKDLFTGKRFHYCLSNPPF 301
            RL    +P    + N +                 S     +    +  Y L NPPF
Sbjct: 456 SRLKANGEPGMISADNNKHDFPLLEHANITCANALSLDWNQVLPAGQCTYVLGNPPF 512


>gi|18976772|ref|NP_578129.1| hypothetical protein PF0400 [Pyrococcus furiosus DSM 3638]
 gi|18892363|gb|AAL80524.1| hypothetical protein PF0400 [Pyrococcus furiosus DSM 3638]
          Length = 329

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 30/125 (24%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R L DP  GTGG L +A                
Sbjct: 167 PPRIARAMVNL------------TRATRELLDPFMGTGGMLIEAGLM------------G 202

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  K+ F GK F    ++P
Sbjct: 203 LKVYGLDIREDMVEGAKINLEYYGIKDYVVKVGDA------TRIKEAFPGKTFEAIATDP 256

Query: 300 PFGKK 304
           P+G  
Sbjct: 257 PYGSS 261


>gi|295396110|ref|ZP_06806293.1| probable type II restriction enzyme, methylase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971051|gb|EFG46943.1| probable type II restriction enzyme, methylase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1160

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 17/120 (14%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +R+   ++NPP+           +          F  G    S    LF M +    E  
Sbjct: 462 RRYAVVVANPPYMGSKNMGATLAD----------FASGKFPDSKSD-LFAMFIERGFEFL 510

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
             GG  A + + S       AG     +R+ LL +  +E +V +   +       A  +W
Sbjct: 511 KPGGLSAMVTMQSWMFLKSYAG-----LRKQLLNDRHLECMVHMGNGVMGIAFGTAAAIW 565


>gi|259909433|ref|YP_002649789.1| Type II restriction enzyme, methylase subunits [Erwinia pyrifoliae
           Ep1/96]
 gi|224965055|emb|CAX56587.1| Type II restriction enzyme, methylase subunits [Erwinia pyrifoliae
           Ep1/96]
          Length = 1223

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 35/187 (18%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+                NGEL  F       S   +  +F+ H  
Sbjct: 497 WILAQRYDAVVANPPYMGSKGM----------NGELKEFAKDNFPESKADLFAMFMQHAF 546

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A +   + +F     S    +R WLL+N +   +  L    F + + 
Sbjct: 547 SLLK----ENGFNAQINMQAWMFLSSYES----LRGWLLDNKMFITMAHLGARAFGQISG 598

Query: 403 --IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             + T  W++ N + E+ +  V                KK  ++           +   +
Sbjct: 599 EVVQTTAWVIKNHRNEKYQ-PVFF-----RLIGGTEAEKKNDLLLHKNI------FNRFK 646

Query: 461 NGKFSRM 467
              F ++
Sbjct: 647 QNTFKKI 653


>gi|15674741|ref|NP_268915.1| phage associated protein [Streptococcus phage 370.1]
 gi|15675377|ref|NP_269551.1| hypothetical protein SPy_1470 [Streptococcus pyogenes M1 GAS]
 gi|71911011|ref|YP_282561.1| phage protein [Streptococcus pyogenes MGAS5005]
 gi|13621865|gb|AAK33636.1| conserved hypothetical protein, phage associated [Streptococcus
           phage 370.1]
 gi|13622562|gb|AAK34272.1| conserved hypothetical protein - phage associated [Streptococcus
           pyogenes M1 GAS]
 gi|71853793|gb|AAZ51816.1| phage protein [Streptococcus pyogenes MGAS5005]
          Length = 211

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K  + I    D+  D     +       Y+  ++ F  E +  +
Sbjct: 5   DEIHRILGIDEVYKAPKRLTDILFDKDSREDIFRQFLKYETDVSYDWFMQYFEEEQADRK 64

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DCG 231
             +   TP+ V  L + ++                  Y+   GTGG L  A      +  
Sbjct: 65  NKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLNDS 111

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P     H +EL  +     +  M IR +        S   Q
Sbjct: 112 PFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|331018142|gb|EGH98198.1| endonuclease-methyltransferase fusion protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 835

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 84/333 (25%), Gaps = 72/333 (21%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF------------MTPRDVVHLATALLLD 193
                   ++ NIYE  +       ++G  +              TP  +V         
Sbjct: 313 SFSVFSSEILGNIYEVFLSERIRINADGKIELQPKKDHIDRDVVTTPGHIVRDIIRNTAV 372

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV------------ 241
                  +   +     D  CG+G FL +    + D    + I                 
Sbjct: 373 EFCRSKTDKQILNSKFADIACGSGAFLLELFQALQDILIDYYIVHDKSKLQQLTPHSFKL 432

Query: 242 ------------PHGQELEPETHAVCVAG------------------MLIRRLESDPRRD 271
                        +G + +      C  G                   ++ +++++    
Sbjct: 433 KLCVKKEILTKCIYGIDKDFNAVKACSFGLLLKLLEGESKDTIELNTSILPKIDNNILFG 492

Query: 272 LSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            S      +  + D           RF   + NPP+      +        +        
Sbjct: 493 NSLIDSNDNIKTTDAIAVNPFNIVHRFDVIIGNPPY---MATEHMKQLTPLELPIYKNKY 549

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               K  D   LF+      L+      G    +L S     G        +R+ L E  
Sbjct: 550 KSAHKQFDKYFLFVERSMQLLK----DEGFLGYILPSKFTKVGAGQG----LRKLLTEQK 601

Query: 386 LIEAIVALP-TDLFFRTNIATYLWILSNRKTEE 417
            +  +++   + +F      T L  L   K  +
Sbjct: 602 YLSKLISFGASQVFKDKTTYTCLLFLKKSKQTK 634


>gi|303241342|ref|ZP_07327846.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302591075|gb|EFL60819.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 1570

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 159 YE--HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           YE    I R      E +  + TP  +        L            +  T+ +P  G+
Sbjct: 514 YEKGTFIYRLAGREREKSASYYTPEVLTKCLVKYALKELLEDKTADEILELTICEPAMGS 573

Query: 217 GGFLTDAMNHVADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDPRR- 270
             FL +A+N +A+     K   +          QE++     +      +  ++ +P   
Sbjct: 574 AAFLNEAINQMAEAYIDKKQKELGDNISYENRNQEIQRVKMYIADRN--VYGIDLNPIAV 631

Query: 271 DLSKNIQQGSTLSKDLF 287
           +L++     +T+ KD F
Sbjct: 632 ELAEVSLWLNTIYKDGF 648


>gi|254561064|ref|YP_003068159.1| DNA adenine methyltransferase; methylase and helicase domains
           [Methylobacterium extorquens DM4]
 gi|254268342|emb|CAX24284.1| putative DNA adenine methyltransferase; putative methylase and
           helicase domains [Methylobacterium extorquens DM4]
          Length = 1698

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 64/220 (29%), Gaps = 50/220 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  G+G  L  A+   A       +  +    G EL+P T  +     L++ 
Sbjct: 184 FRGGRVLEPGIGSG--LFPALMPPA-------LRDLCHVTGIELDPVTARIVK---LLQP 231

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             +    D ++                 F   + NPPF        D   +  +      
Sbjct: 232 RATILNADFARIELTPH-----------FDLAIGNPPFS-------DRTVRSDRAYRGLG 273

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F      I+             L+     GG AA V SS  L    A +     R  +  
Sbjct: 274 FRLHDYFIAKA--------LRSLKP----GGLAAFVTSSGTLDKTDATA-----REHVAA 316

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRG 420
              +   + LP   F     T++   +     R+  E   
Sbjct: 317 MADLVGAIRLPEGSFRAEAGTDVVVDILFFRKRRDGESAD 356


>gi|227485134|ref|ZP_03915450.1| conjugative transposon DNA recombination protein [Anaerococcus
            lactolyticus ATCC 51172]
 gi|227236967|gb|EEI86982.1| conjugative transposon DNA recombination protein [Anaerococcus
            lactolyticus ATCC 51172]
          Length = 2573

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 67/461 (14%), Positives = 128/461 (27%), Gaps = 85/461 (18%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+        D               + +P+ G G F+   
Sbjct: 1167 SEYEAARDSTLTSFYTPKTVI--------DGVYKTLSGMGFKQGNILEPSMGIGNFI--- 1215

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G+          +G EL+  +  +                   ++  Q   L 
Sbjct: 1216 -------GNLPDEMNKSKFYGVELDSVSGRIGKL-------------LYPESDIQVKGLE 1255

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D+          E  R           + L   +  
Sbjct: 1256 ETGFSNNFFDVAIGNVPFGEYKVNDR----------EYNRN----------NFLIHDYFF 1295

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + SS  +        +  +RR+L         + LP D F     
Sbjct: 1296 AKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARTEFIGAIRLPNDTFKGVAG 1350

Query: 401  TNIATYLWILSNRKTEERRGKVQ---------------LINATD--LWTSIRNEGKKRRI 443
            T + + +  L  R +   R +                  ++  +  L +     G+  + 
Sbjct: 1351 TEVTSDIIFLKKRDSVLERDEDWIHLAEDENGLSYNKYFVDHPEQVLGSMREVSGRFGKT 1410

Query: 444  INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +  +        Y+  E    S        G R  K  +   +  + D+        D+ 
Sbjct: 1411 LTCEPI-----AYLGTEINMASLKERIEIAGERISKEAKYEEIELLDDEITSIPATDDVK 1465

Query: 504  WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
                + +    +       +++       E        +   K +  K  + F    I A
Sbjct: 1466 NFSYTLIDDEVYYRENSLFIKKEVSDKNKEKIKDYLELNAALKDVIYKQKEDFNEEEIKA 1525

Query: 564  FGRK-DPRADPVTDVNG---EWIPDTNLTEYENVPYLESIQ 600
               K +   D  +  +G          L E  N P + SI+
Sbjct: 1526 SQEKLNEVYDNFSKKHGFVNNLSNTRALKEDSNFPLVSSIE 1566


>gi|39840941|ref|NP_950205.1| restriction methylase [Rhodopseudomonas palustris CGA009]
 gi|39647239|emb|CAE25441.2| restriction methylase [Rhodopseudomonas palustris CGA009]
          Length = 609

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 14/141 (9%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 + TP  +      L  +               + DP CG G FL      +   
Sbjct: 128 RSSQGAYYTPPALTERLLQLAEEAGVD------WRTARVLDPACGGGAFLVPVAARMRRA 181

Query: 231 GSHHKIPPIL-----VPHGQELEPETHAVCVAGMLIR---RLESDPRRDLSKNIQQGSTL 282
               +   IL        G E++P    +  A + I     L +  RR  +      S  
Sbjct: 182 LGAIEPGRILDHFAKSLQGFEIDPFAAWLTQAWLEIAFAPELRATKRRFPAVVQVCDSLD 241

Query: 283 SKDLFTGKRFHYCLSNPPFGK 303
                  + F   + NPP+G+
Sbjct: 242 QVLGNDRQAFDLVIGNPPYGR 262


>gi|289432179|ref|YP_003462052.1| hypothetical protein DehalGT_0229 [Dehalococcoides sp. GT]
 gi|288945899|gb|ADC73596.1| hypothetical protein DehalGT_0229 [Dehalococcoides sp. GT]
          Length = 1115

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 93/261 (35%), Gaps = 16/261 (6%)

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           ++  L   L L  D+   K+   +    Y   CG    L      + + G  +++  + +
Sbjct: 577 EIAKLRLWLSLVVDEEDIKQIQPLPNLDYKVVCG--NSLLGVEKDLFNIGLFNQLEVLKI 634

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRD--LSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +E       +       ++++   ++    + N       S+       F   + NP
Sbjct: 635 AFFKETN-----INKKQDFRKQIDGIIKQIARNNPNFDYQVYFSEVFHEKGGFDVVIGNP 689

Query: 300 PFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+ +    +  D+ + + +     R+G     I+ GS L + +  +      +  GR  +
Sbjct: 690 PYLEARSPEFSDSFKDQLREAVKRRWGVLSEYITRGSDLLI-YFYDISLSIISDKGRVVL 748

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +  +S L          + + +L++   + AI+      F   N+ T + +L  R     
Sbjct: 749 LTENSWLDTLYG----KKFQEFLIKTTYVRAIIDSDFKYFDGPNVNTIISMLEGRTPMPA 804

Query: 419 RGKVQLINATDLWTSIRNEGK 439
           + KV      + +  + +  K
Sbjct: 805 K-KVAFTRFHENFEKLISFNK 824


>gi|163942371|ref|YP_001647255.1| putative adenine-specific DNA methyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|229135475|ref|ZP_04264262.1| hypothetical protein bcere0014_43700 [Bacillus cereus BDRD-ST196]
 gi|229169365|ref|ZP_04297075.1| hypothetical protein bcere0007_43150 [Bacillus cereus AH621]
 gi|163864568|gb|ABY45627.1| putative adenine-specific DNA methyltransferase [Bacillus
           weihenstephanensis KBAB4]
 gi|228614128|gb|EEK71243.1| hypothetical protein bcere0007_43150 [Bacillus cereus AH621]
 gi|228648036|gb|EEL04084.1| hypothetical protein bcere0014_43700 [Bacillus cereus BDRD-ST196]
          Length = 328

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 46/271 (16%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            + +T     +   ++  I + G +    A   MTP  V    + L         +    
Sbjct: 63  FNEETYKGEEIRKAFQLAILK-GMKEGVQANHEMTPDAVGMFMSYLFHKFMQGQKEI--- 118

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--R 262
              T+ DP  GTG  +T   N   +          +   G E++     + +    +   
Sbjct: 119 ---TVLDPAIGTGNLMTTLFNSAKE-------ELTMSGFGVEVDEVLIKLALVNANLQKH 168

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +E   +  L+                      +S+ P G  +  +  A E   K  E  
Sbjct: 169 AIEFFHQDGLAPLYI------------DPVDAVVSDLPIG-YYPNEIVASEYTLKANEGM 215

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +                    +       GG    ++ +    + +A    + I+    
Sbjct: 216 SYAH-------------HLFIEQSVKHTKEGGYLFFLVPNFIFESDQAPKLHAFIK---- 258

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           E   I+ ++ LP  +F     A  +++L  +
Sbjct: 259 ETCFIQGLLQLPVSMFKNEKNAKSIFVLQKK 289


>gi|260821328|ref|XP_002605985.1| hypothetical protein BRAFLDRAFT_126559 [Branchiostoma floridae]
 gi|229291322|gb|EEN61995.1| hypothetical protein BRAFLDRAFT_126559 [Branchiostoma floridae]
          Length = 504

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
                +    +  +IL IY++ +N   SR+L    FG  + +  +   +S   D T    
Sbjct: 251 KNHNLLFISKEHEEILFIYINVDNDDHSRIL--EFFGLNKEECPQVRLISLDEDMTKYKP 308

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
              +IT   +    Q F    +K  +         +    + +       + +  +K+ +
Sbjct: 309 ETEEITTENMKAFVQGFIDKTIKAFLMSQDVPEDWDKEGVKVLVGKNFAEVALDENKAVL 368

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTN 586
           V F   +     +  P+ D  GE   D+ 
Sbjct: 369 VEFYAPWCGHCKQLAPIYDELGEKFKDSE 397


>gi|126699473|ref|YP_001088370.1| putative conjugative transposon DNA recombination protein
            [Clostridium difficile 630]
          Length = 3011

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 63/436 (14%), Positives = 126/436 (28%), Gaps = 77/436 (17%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D               + +P+ G G F+ +  + +               +G EL+
Sbjct: 1278 KIVIDGIYKTLSGMGFKQGNILEPSMGIGNFIGNVPDEMGKS----------KFYGVELD 1327

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +                   ++  Q   L +  F+   F   + N PFG+    D
Sbjct: 1328 SVSGRIGKL-------------LYPESEVQVKGLEETGFSNNFFDVAIGNVPFGEYKVND 1374

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +          E  R           + L   +   K       GG    + SS  +   
Sbjct: 1375 R----------EYNRN----------NFLIHDYFFAKSIDKVRNGGVITFITSSGTM--- 1411

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRK----------- 414
                 +  +RR+L         + LP D F     T + + +  L  R            
Sbjct: 1412 --DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDSVLERDEAWIH 1469

Query: 415  -TEERRGKV---QLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             +E++ G V     ++  +  L +     G+  + +  +        Y+ +E    S   
Sbjct: 1470 LSEDKNGLVYNKYFVDHPEQVLGSMREVSGRFGKTLTCEPI-----AYLGQEINMASLKE 1524

Query: 469  DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 G R  K  +   +  + D+        D+     +      +       +++   
Sbjct: 1525 RIEIAGERISKDTKYEEIELLDDEITSIPATDDVKNFSYTLNDDEVYYRENSLFIKKEVS 1584

Query: 529  YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK-DPRADPVTDVNG---EWIPD 584
                E        +   K +  K  + F    I A   K +   D  +  +G        
Sbjct: 1585 DKNKEKIKDYLELNVALKDVIYKQKEDFSEEEIKASQEKLNEVYDNFSKKHGFVNNLSNT 1644

Query: 585  TNLTEYENVPYLESIQ 600
              L E  N P + SI+
Sbjct: 1645 RALKEDSNFPLVSSIE 1660


>gi|328887631|emb|CAJ68736.2| putative DNA/RNA helicase Tn1549-like,CTn5-Orf21 [Clostridium
            difficile]
          Length = 2993

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 63/436 (14%), Positives = 126/436 (28%), Gaps = 77/436 (17%)

Query: 189  ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +++D               + +P+ G G F+ +  + +               +G EL+
Sbjct: 1260 KIVIDGIYKTLSGMGFKQGNILEPSMGIGNFIGNVPDEMGKS----------KFYGVELD 1309

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              +  +                   ++  Q   L +  F+   F   + N PFG+    D
Sbjct: 1310 SVSGRIGKL-------------LYPESEVQVKGLEETGFSNNFFDVAIGNVPFGEYKVND 1356

Query: 309  KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            +          E  R           + L   +   K       GG    + SS  +   
Sbjct: 1357 R----------EYNRN----------NFLIHDYFFAKSIDKVRNGGVITFITSSGTM--- 1393

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRK----------- 414
                 +  +RR+L         + LP D F     T + + +  L  R            
Sbjct: 1394 --DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKRDSVLERDEAWIH 1451

Query: 415  -TEERRGKV---QLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             +E++ G V     ++  +  L +     G+  + +  +        Y+ +E    S   
Sbjct: 1452 LSEDKNGLVYNKYFVDHPEQVLGSMREVSGRFGKTLTCEPI-----AYLGQEINMASLKE 1506

Query: 469  DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 G R  K  +   +  + D+        D+     +      +       +++   
Sbjct: 1507 RIEIAGERISKDTKYEEIELLDDEITSIPATDDVKNFSYTLNDDEVYYRENSLFIKKEVS 1566

Query: 529  YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK-DPRADPVTDVNG---EWIPD 584
                E        +   K +  K  + F    I A   K +   D  +  +G        
Sbjct: 1567 DKNKEKIKDYLELNVALKDVIYKQKEDFSEEEIKASQEKLNEVYDNFSKKHGFVNNLSNT 1626

Query: 585  TNLTEYENVPYLESIQ 600
              L E  N P + SI+
Sbjct: 1627 RALKEDSNFPLVSSIE 1642


>gi|241758976|ref|ZP_04757088.1| DNA-methyltransferase [Neisseria flavescens SK114]
 gi|241320797|gb|EER57030.1| DNA-methyltransferase [Neisseria flavescens SK114]
          Length = 937

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 80/323 (24%), Gaps = 57/323 (17%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           G +      + ++        +  L    +        +   + +         ++  NT
Sbjct: 181 GSYDEHSLKQFLIRLLFCFFADDTLIFEPNQFEGYLKKYTREDGEDIGGTLNRLFAVLNT 240

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                +   +T  R         F +       +F F++ +  L          K     
Sbjct: 241 PPERRAQNMNTELRAFPYVNGKLFEEQ----LGEFYFNAELRELLLQCSARDWAK----- 291

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFG--SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                 +   +  N+++ ++         +   E+    + +  L    L +      K 
Sbjct: 292 ------ISPEIFGNLFQSVMDNVERRELGAHYTEEGNILKVIDGLFMDNLRERFQTACKV 345

Query: 202 SPGMIRT--------------LYDPTCGTGGFLTDAMNHVADCGSHHKIP---------- 237
           S    RT                DP CG G FL  A   +                    
Sbjct: 346 SGKAKRTAAIHELHQEIGRLQFLDPACGCGNFLVVAYRELRKLEDDIIGELFAEGQLLDI 405

Query: 238 ------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------ 285
                  I   HG E++     +    M +   + + R        + S    D      
Sbjct: 406 STMLQTHIGQFHGIEIDEYPAQIAKVAMWLTDHQCNLRTAERFGQTRPSIPLTDSAEIIN 465

Query: 286 ----LFTGKRFHYCLSNPPFGKK 304
                    +  Y   NPPF  K
Sbjct: 466 ANSLHTEWPQADYIFGNPPFVGK 488


>gi|296111134|ref|YP_003621515.1| type I restriction-modification system methyltransferase
           subunit(putative) [Leuconostoc kimchii IMSNU 11154]
 gi|295832665|gb|ADG40546.1| type I restriction-modification system methyltransferase
           subunit(putative) [Leuconostoc kimchii IMSNU 11154]
          Length = 336

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 104/309 (33%), Gaps = 44/309 (14%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           S +D    I ED    S    L K    +  +I +  + ++     +    +  I +  I
Sbjct: 27  SITDALIEIIEDVHAGSIHHELGKPTDEVTQEISQAINTVDWS--NIARGDLRKILQLAI 84

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +   +    A   +TP  + +L    LL         +     T+ D T G+G  L   
Sbjct: 85  LKANRDDKLQANHQLTPDGLGYLLADFLL------QTANLSNGDTILDLTVGSGNLL--- 135

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + D    H I    V  G + +    A+  A      ++    +  ++  Q+     
Sbjct: 136 -NTINDVLLMHDITINRV--GIDNDDTQLALATA------VDQLLNQGTTEFYQEDVIAV 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +    K     +++ P G       D+                  + SDG  L    L 
Sbjct: 187 DNAPKAK---AVIADLPVGYYPLVPSDSY---------------TTRASDGRSLTHHLLI 228

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            K        G   +++ ++ L    +G+   +I +++ +   ++A + LP D F     
Sbjct: 229 EKSLDFVTDDGWVYLIVPANVL----SGAHAKKILQFVTQKAQLKAFLQLPNDFFKDQRA 284

Query: 404 ATYLWILSN 412
           A  + +L  
Sbjct: 285 AKAILVLRK 293


>gi|154498723|ref|ZP_02037101.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC
           29799]
 gi|150272263|gb|EDM99461.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC
           29799]
          Length = 2062

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 68/258 (26%), Gaps = 70/258 (27%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +          T   V+      +                 + +P+CG G F    
Sbjct: 506 EEYAAARGSTLNAHYTSPTVIRAIYEAV--------GRMGFETGNILEPSCGVGNFF--- 554

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278
                  G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 555 -------GMLPEEMRNSRLYGVELDSISGRIAQQLYPKADITVAGFETTDRRDF------ 601

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                        +   + N PFG+   +DK                         +   
Sbjct: 602 -------------YDLAIGNVPFGQYQVRDK--------------------AYDKLNFSI 628

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +   K       GG  A V            + +S +RR+L +   +   + LP D F
Sbjct: 629 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSSVRRYLAQRAELLGAIRLPNDAF 683

Query: 399 ---FRTNIATYLWILSNR 413
                  + + +  L  R
Sbjct: 684 KKNAGAEVVSDIIFLQKR 701


>gi|1709169|sp|P52284|MTR1_PBCVX RecName: Full=Modification methylase CviRI; Short=M.CviRI; AltName:
           Full=Adenine-specific methyltransferase CviRI
 gi|281234|pir||S26851 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) CviRI - Chlorella virus CV-XZ6E
 gi|323329|gb|AAA42900.1| TGCA adenine methyltransferase [Chlorella virus]
          Length = 379

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 55/255 (21%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
              +R   +       F TP+D+  +    L D +             + +PTCGTG F+
Sbjct: 10  EFHKRLSKKERSDGGVFFTPKDIRDIVFEELGDFEPT----------NILEPTCGTGEFI 59

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +D      +              G E++P +  +          +      +  +     
Sbjct: 60  SDCRKVYKNS----------RIIGVEIDPRSAELAR--------DGSKNEIIVHDFMTWD 101

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           T        ++F   + NPP+  +                   F      +   S + + 
Sbjct: 102 T-------DEKFDLIIGNPPYFTRPTG----------------FKHDPSVVKCRSNICIE 138

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            L   +       G  A+VL  S L +         I   +   D++ A  A+  + F  
Sbjct: 139 VLHKCITRHLADNGMLAMVLPVSILNSKFYTPTIDLITDTM---DVVSA-RAIKKNNFMG 194

Query: 401 TNIATYLWILSNRKT 415
           TN+   ++I+  R  
Sbjct: 195 TNVRVMVFIIRKRTP 209


>gi|322385340|ref|ZP_08058985.1| SNF2 family protein [Streptococcus cristatus ATCC 51100]
 gi|321270599|gb|EFX53514.1| SNF2 family protein [Streptococcus cristatus ATCC 51100]
          Length = 2077

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 97/360 (26%), Gaps = 78/360 (21%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            S L   N ++     + S  +      +DF F   +          KI  N + I+L  
Sbjct: 364 FSYLEEENEKDKETETLISSIEELDIPVQDFVFPDDLEDFYPKTNREKIETNIAAIDLVK 423

Query: 148 DTVPDRVMSNIYE-HLIRRFGSEVSEGAEDF--MTPR-DVVHLATA-------------- 189
               +   +N  E  L+ ++        E F  + P+ +   L                 
Sbjct: 424 RLEKEGRQANPEEQELLAKYVGWGGLANEFFDELNPKYEAERLTLKSLVSKSEYSTMKQS 483

Query: 190 ---------LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
                    +++        +       + DP+ GTG F       + D           
Sbjct: 484 SLTAYYTDPMIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRDKSE-------- 535

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +G EL+  T  +      +        R   +   Q ++          F   L+N P
Sbjct: 536 -LYGVELDSVTGEIAKQ---LHPNVHIEVRGFEEVPYQNNS----------FDLVLTNVP 581

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     DK+                      D   +   +           GG+ +I+ 
Sbjct: 582 FGNFRIADKNY---------------------DKPYMIHDYFVKHSLDLVRDGGQVSIIS 620

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           S   +           + + +  N      V LP   F     T + T L      + + 
Sbjct: 621 SIGTMDKRTDN-----VLQEIKTNTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKNQAKN 675


>gi|317154910|ref|YP_004122958.1| type I restriction system adenine methylase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316945161|gb|ADU64212.1| type I restriction system adenine methylase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 129

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVIL 36
           +   +A  +   ++K A+ L G+ + +D+  V+L
Sbjct: 90  KNDEAALGIEAELFKTADKLRGNMEPSDYKHVVL 123


>gi|304311242|ref|YP_003810840.1| Adenine-specific methylase [gamma proteobacterium HdN1]
 gi|301796975|emb|CBL45188.1| Adenine-specific methylase [gamma proteobacterium HdN1]
          Length = 319

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 25/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LI R  F     +  +  + PR  +        +P  A  +     + ++ D   G+G 
Sbjct: 103 YLIGRAWFAGLEFKVDDRVLIPRSPIGELIEKQFEPWIAAER-----VESILDLCTGSGC 157

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 +H  D          ++    ++      +    +    LES      S   + 
Sbjct: 158 IGIACAHHFPD----------VIVDCVDISEAALDIAEENLQNLGLESQVNLIFSDLFE- 206

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                     G+ +   +SNPP+  + +  +   E  H+
Sbjct: 207 -------ALDGRTYDIIVSNPPYVDERDMAELPTEYRHE 238


>gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
 gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
          Length = 571

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 22/138 (15%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +      TP ++       ++   D           T+ DP CG G  L      
Sbjct: 8   AAANVKVHGQHYTPPELAEFLADHIVAAADL-----DRPELTIIDPACGDGELLVAVARS 62

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP---RRDLSKNIQQGSTLS 283
           + D G       IL   G +++        A   +R +  D    + D   + +   T S
Sbjct: 63  LKDAG----YLGILKLIGYDIDAAAVEQARAR--LRDVNRDAQVIQGDFLLHQRNLPTHS 116

Query: 284 KDLFTGKRFHYCLSNPPF 301
                       ++NPP+
Sbjct: 117 --------VDIIITNPPY 126


>gi|295396904|ref|ZP_06807028.1| adenine-specific methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974838|gb|EFG50541.1| adenine-specific methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 344

 Score = 40.9 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 88/291 (30%), Gaps = 40/291 (13%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA----TALLLD 193
           + +S I L      D   +  +  +      ++   A   MTP  +  L     T L+  
Sbjct: 61  EIYSNINLQEYEAEDIRKAVQFAFIEGEKADQL--QANYHMTPEAIAVLMGYFATKLVDH 118

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
              A   +   +  T +D T GTG       N +   G        +   G + +    +
Sbjct: 119 GHLADKADHTEI--TFFDSTMGTGNLYAIIYNALKASG------YKIQGFGYDNDDLMLS 170

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +      ++ +          N+  G +L   +         + + P G     +     
Sbjct: 171 IADVSTRLQDI--------PANLYLGDSLQNLIVPPS--DLIVGDLPLGYYPVDEVADTY 220

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              KN E G+             L +      L+      G    ++ +  +        
Sbjct: 221 SSAKNREEGQHAFVH-------YLMVEQGLRYLKP----NGWGIYIVPAGLI----QDEN 265

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423
              +   + E+   +A+++LP++LF    +    L +       ++   V 
Sbjct: 266 IKTLIEAIGEHGYFQALLSLPSNLFNNEKSRKAILLVQKAGDKAKQSENVL 316


>gi|296269521|ref|YP_003652153.1| hypothetical protein Tbis_1545 [Thermobispora bispora DSM 43833]
 gi|296092308|gb|ADG88260.1| conserved hypothetical protein [Thermobispora bispora DSM 43833]
          Length = 1195

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           + H   +  R + ++Y+ L       V +      TP  +        L P      +  
Sbjct: 176 DFHSPELDTRFLGDLYQDL----SEHVRKRYALLQTPEFIGDFILDRTLTP---AIDDFG 228

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHKIPPIL-VPHGQELEPETHAV 254
                L DP CG+G FL  A + +               ++  +L   HG ++ P   A+
Sbjct: 229 LDGLKLIDPACGSGHFLLGAFDRLLQAWAAQAPGMDERVRVQKVLDSIHGVDINPTATAI 288

Query: 255 CVAGMLIRRLES 266
               +++  L++
Sbjct: 289 TKFRLMVAALQA 300


>gi|237745911|ref|ZP_04576391.1| methyltransferase HemK MTase hemK [Oxalobacter formigenes HOxBLS]
 gi|229377262|gb|EEO27353.1| methyltransferase HemK MTase hemK [Oxalobacter formigenes HOxBLS]
          Length = 287

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 56/230 (24%), Gaps = 40/230 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            Y   IR F         D + PR    L   L L                + D   G+G
Sbjct: 77  AYITGIREFYGLPFAVTPDVLIPRPETELLVDLAL--------ARLPEGGRVVDLGTGSG 128

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                               P       ++  +   +           S  +   S   +
Sbjct: 129 AIAVAIAAM----------RPDAQVWATDISGKALDIARKNAA-----SCLKNGQSVRFR 173

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           QG+     L  G RF   +SNPP+             EH      RF P          L
Sbjct: 174 QGNWYEA-LEPGSRFDLIVSNPPYIHS--------ADEHLRKGDLRFEPLSALTDYTDGL 224

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             M +           G          L      +    +R+ L++   +
Sbjct: 225 SAMDILIDQAPAYLKKG--------GELLMEHGYNQSGAVRKKLVDKKYL 266


>gi|182684275|ref|YP_001836022.1| SNF2 family protein [Streptococcus pneumoniae CGSP14]
 gi|182629609|gb|ACB90557.1| SNF2 family protein [Streptococcus pneumoniae CGSP14]
          Length = 2077

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 63/231 (27%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 493 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRERSE---------LYGVELDS 543

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 544 VTGAIAKQ---LHPNAYIEVRGFEEVPFQNNS----------FDLVLTNVPFGNFRIADK 590

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                      D   +   +           GG+ +I+ S   +    
Sbjct: 591 NY---------------------DKPYMIHDYFIKHSLDLVRDGGQVSIISSIGTMDKRT 629

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  +      V LP   F     T + T L      + + 
Sbjct: 630 DN-----VLQEIKSSTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 675


>gi|89073464|ref|ZP_01159987.1| putative adenine-specific methylase [Photobacterium sp. SKA34]
 gi|89050728|gb|EAR56209.1| putative adenine-specific methylase [Photobacterium sp. SKA34]
          Length = 310

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 24/143 (16%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +     L+ +  + L  + P     + D   G+G       +   +     
Sbjct: 108 ERVLIPRSPIG---ELIENRFEPLLSQEPT---RIMDLCTGSGCIGIACAHMFPEAEVDI 161

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      ++ PE  AV    +    LE       S  ++             ++ +
Sbjct: 162 ----------VDISPEALAVAEQNIADHGLEQQVIPLRSDLLRD--------VPKDKYDF 203

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK 317
            +SNPP+  + + D    E  H+
Sbjct: 204 IVSNPPYVDQEDMDSLPDEFRHE 226


>gi|331084815|ref|ZP_08333903.1| hypothetical protein HMPREF0987_00206 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410909|gb|EGG90331.1| hypothetical protein HMPREF0987_00206 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 101

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR---LEKAGLLYKICKNFS 141
            + +  L S        +      ++ + +F+D    ST       +++ ++ +I    +
Sbjct: 9   NFDVEFLQSAINSIMESTMGTESEEDFEGLFDDMQLDSTKLGRTVKDRSVVMSRIITTLA 68

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            I ++ D     ++ N YE+LI        +  
Sbjct: 69  DITINEDDTKIDILGNAYEYLIGSMMCFQMKKI 101


>gi|317014089|gb|ADU81525.1| hypothetical protein HPGAM_03455 [Helicobacter pylori Gambia94/24]
          Length = 1198

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 94/335 (28%), Gaps = 39/335 (11%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
           +K        TS      +      +N+++ IA   D       D         L+    
Sbjct: 362 IKEEEALDMITSHVITKPIFDAIFGDNIQNPIAKALDKMVLKLSDLGLEGETKDLKNLYE 421

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL- 191
             K                  ++ N+Y    +    + SE      TP +VV        
Sbjct: 422 SVKT----EAARAKSQKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATN 477

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEP 249
                    +      T++DP  GTG F+   ++   D  S   +           ++  
Sbjct: 478 GILKKHFNTDFNDQNITIFDPFTGTGSFIARLLSKENDFISDEALKEKFQKGLFAFDIVL 537

Query: 250 ETHAVCVAGML---------IRRLESDPRRDLSKNIQQ------------------GSTL 282
            ++ + +  +          ++  ++    D    +++                   +  
Sbjct: 538 LSYYIALINITQAAQNRDSSLKNFKNIALTDSLDYLEEKSDKGVIPGFEYLFADLKENKE 597

Query: 283 SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSML 337
            K+  T +     + NPP+  G K E D +   K  K  +      G     K    +  
Sbjct: 598 IKNTVTEQNIRVIIGNPPYSSGAKSENDNNQNLKHPKLEKKVYETYGKNSTAKTGKTTRD 657

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            L+H            G    V++ S + +  A  
Sbjct: 658 ALIHSIRMASDLLKDKGVLGFVVNGSFIDSKSADG 692


>gi|308061808|gb|ADO03696.1| type II adenine specific methyltransferase [Helicobacter pylori
           Cuz20]
          Length = 545

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNYLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLEKLGSYYEE---ELSNTARNLEGIYYTPNKIVE---QLFTLPKDFDASQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQRFN 229


>gi|167975332|ref|ZP_02557609.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|168362409|ref|ZP_02695588.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195867397|ref|ZP_03079401.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273462|ref|ZP_03205998.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225550717|ref|ZP_03771666.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|171903368|gb|EDT49657.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195659907|gb|EDX53287.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660873|gb|EDX54126.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249982|gb|EDY74762.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379871|gb|EEH02233.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 290

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           Y+   Y    L   N RN   ++  +    D  K  +    FS+   +L    L  K  +
Sbjct: 3   YHQLVYQAQLLLQKNQRNTQVAFELLYGLDDEVKDFYS---FSNNRLKLVDLSLECKYFE 59

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +  E   +   +R++   Y    RRF  + +  A           + T LL+D  + +
Sbjct: 60  LLN--EFINEKPLERILGYGY-FCGRRFYVDENVFAF---------RVETELLVDVINKI 107

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            K+S   I+++ D  CG+G        +  +         +      +   + H +    
Sbjct: 108 IKQSTHQIKSVIDVCCGSGVLGLSVKMNFNNLDVSLLDISLDAISNSKKNAQYHNI---- 163

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
                           N    S     L T KRF   + NPP+ K 
Sbjct: 164 -------------EGINYLHKSMQKYFLHTKKRFDLIICNPPYIKS 196


>gi|322386601|ref|ZP_08060226.1| adenine-specific methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269274|gb|EFX52209.1| adenine-specific methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 321

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 80/257 (31%), Gaps = 44/257 (17%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ +  +        A    TP  V  L + L+         +       L +   GT
Sbjct: 68  RAYQFIFMKASQTEPLQANHQFTPDSVGFLLSFLIDQLAQDERVD-------LLEIGSGT 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +NH             +   G E++     +  +             +   + 
Sbjct: 121 GNLAETLLNH---------TQKNMDYLGLEIDDLLIDLSAS--------IAEVMNSKAHF 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +         +S+ P G   +    A                +    + + 
Sbjct: 164 AQGDAVRPQVLKES--DLIVSDLPVGYYPDDAVAA-------------RYEVASPDEHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+     GG A  +  ++ L + ++      +++WLL +  + A+++LP  
Sbjct: 209 AHHLLMEQSLKYLKP-GGYAIFLAPNNLLTSPQS----HLLKKWLLSSAQLLAMISLPEK 263

Query: 397 LFFRTNIATYLWILSNR 413
           +F     A  +++L  +
Sbjct: 264 IFASRQNAKTIFVLRKQ 280


>gi|295104582|emb|CBL02126.1| DNA methylase [Faecalibacterium prausnitzii SL3/3]
          Length = 1551

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 70/257 (27%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +  +       T   V+               +        + +P+ G G F     
Sbjct: 563 EYAAARASTLNAHYTGPTVIR--------GIYDAVERMGFQSGNILEPSMGVGNFF---- 610

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279
                 G           +G EL+  T  +       A + +   E+  RRD        
Sbjct: 611 ------GMLPTSMADSRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 657

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                       +   + N PFG+    DK             + G  +           
Sbjct: 658 ------------YDLAVGNVPFGQYKVNDKA----------YNKLGFSIHN--------- 686

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K       GG  A V            S +S  R+ + E   +   + LP + F 
Sbjct: 687 -YFFAKAIDQIRPGGVIAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 740

Query: 399 --FRTNIATYLWILSNR 413
               T++ + +  L  R
Sbjct: 741 ANAGTDVVSDIIFLQKR 757


>gi|269961079|ref|ZP_06175448.1| hypothetical protein VME_18320 [Vibrio harveyi 1DA3]
 gi|269834298|gb|EEZ88388.1| hypothetical protein VME_18320 [Vibrio harveyi 1DA3]
          Length = 894

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 88/257 (34%), Gaps = 52/257 (20%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L++   ++ R  L  ++  F      +FE  +    + +  +  L+    +++S I    
Sbjct: 226 LNSPDGSDLRKRLPQHLTDFPYVNGGLFESDEPIPELGKKGRRILIECGLEDWSAIN--- 282

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 +  ++++ +I     + +   + + +  +++ +   L LDP  A  ++    + 
Sbjct: 283 ----PDIFGSMFQAVID--VDQRARLGQHYTSYSNIMKVIQPLFLDPLRAELEKQRNSVN 336

Query: 208 ------------TLYDPTCGTGGFLTDAMNHVA-------------DCGSHHKIPPILVP 242
                        ++DP CG+G FL  A   +              D G       +   
Sbjct: 337 GLKRLLVRLGEIKVFDPACGSGNFLIIAYKELRLLEIEVIQALMKIDQGFFISNIHLDQF 396

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-------------GSTLSKDLFT- 288
           +G E++     +    + +   + + + +      +             G++L ++    
Sbjct: 397 YGIEIDDFACEIARLSLWLAEHQINKQWEEHIGPAEDPLPLKATGKIVSGNSLHENWKEV 456

Query: 289 ----GKRFHYCLSNPPF 301
                    Y + NPPF
Sbjct: 457 CPKADSDEVYVIGNPPF 473


>gi|118576202|ref|YP_875945.1| helicase [Cenarchaeum symbiosum A]
 gi|118194723|gb|ABK77641.1| helicase [Cenarchaeum symbiosum A]
          Length = 1175

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 100/362 (27%), Gaps = 50/362 (13%)

Query: 58   KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    ++D +  VKV       +  +++       + N + S + +        +E 
Sbjct: 737  DLKKVVNDSVDEKETVKVLAQHKALSEVFNVLFAEEFRSSNPVASALDAAMRKIGLTYEL 796

Query: 118  FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             DF             ++  K               ++  IY   +  F  +        
Sbjct: 797  EDFERFYKETRNEMSNFRTVKG-----------KQELIKKIYGSFLEGFDPDNQSRNGIV 845

Query: 178  MTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGF---LTDAMNHVADCGSH 233
             TP +V+      + D     FK S       ++DP  GTG F   L ++     +    
Sbjct: 846  YTPDEVIDFIIHSVQDVLKHHFKSSLTDTSVKVFDPFTGTGAFVTHLLESGLIGKEKLYR 905

Query: 234  HKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                 I V    EL    + V           +      S    + +  +    T   D 
Sbjct: 906  KYKHDIWV---NELSLLAYYVASVNIESTYASIRNGGHVSFESINYTDTLTHHPTQRVDK 962

Query: 287  FTGKR----------------------FHYCLSNPPFGKKWEKDKDA-VEKEHKNGELGR 323
                +                       H  + NPP+    E  K   ++   K+     
Sbjct: 963  SKRGKIIKLAGKMEEINENIQKINMQHIHVIMGNPPYSFANENAKYPLIDARIKDTYAME 1022

Query: 324  FGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            F    P+  + + LF  ++             G  A V ++  L N  A      +++  
Sbjct: 1023 FKRKYPEGGNINSLFDSYIRSIRWASDRIGNAGVIAFVTNAGFLRNSSAAGLRVCLKKEF 1082

Query: 382  LE 383
             E
Sbjct: 1083 NE 1084


>gi|90579978|ref|ZP_01235786.1| putative adenine-specific methylase [Vibrio angustum S14]
 gi|90438863|gb|EAS64046.1| putative adenine-specific methylase [Vibrio angustum S14]
          Length = 310

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 24/143 (16%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +     L+ +  + L  + P     + D   G+G       +   +     
Sbjct: 108 ERVLIPRSPIG---ELIENRFEPLLNQEPT---RIMDLCTGSGCIGIACAHMFPEAEVDI 161

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      ++ PE  AV    +    LE       S  ++             ++ +
Sbjct: 162 ----------VDISPEALAVAEQNIADHGLEQQVIPLRSDLLRD--------VPKDKYDF 203

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK 317
            +SNPP+  + + D    E  H+
Sbjct: 204 IVSNPPYVDQEDMDSLPDEFRHE 226


>gi|47177046|ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans OM5]
 gi|47115437|emb|CAG28490.1| putative methylase protein [Oligotropha carboxidovorans OM5]
          Length = 1550

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 50/221 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +P  GTG F                +  +    G EL+P T  +         
Sbjct: 40  WRGGRILEPGIGTGLFP---------ALMPDGLRDVSRVTGIELDPVTARIARL------ 84

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                       I  G  +  +L     F   + NPPF  +  +   A            
Sbjct: 85  ------LQPRARIIAGDFVRTELPAS--FDLAIGNPPFSDRTVRSDRAYRSLGLRLHDYF 136

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               +  +  G++                               G     +S +R  + +
Sbjct: 137 IARAIDLLKPGALAAF------------------------VTSAGTMDKADSTMRECIAK 172

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           +  + A + LP   F     T +   +      K  +  G 
Sbjct: 173 SADLIAAIRLPEGSFRASAGTEVVVDVLFFRKHKIGDAEGD 213


>gi|296332075|ref|ZP_06874539.1| putative nucleic acid methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675530|ref|YP_003867202.1| putative nucleic acid methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150846|gb|EFG91731.1| putative nucleic acid methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413774|gb|ADM38893.1| putative nucleic acid methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 328

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 41/222 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLE 265
           T+ DP  GTG  L   +N +++  ++         +G E++     +    A +L + LE
Sbjct: 120 TVLDPAVGTGNLLFTVLNQLSEKTANS--------YGIEIDDVLLKIAYAQANLLKKELE 171

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
              +  L                       + + P G  +  D+ A   E K  E   F 
Sbjct: 172 LFHQDSLEPLFI------------DPVDTVICDLPVG-YYPNDEGAEAFELKADEGHSFA 218

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                              +       GG    ++ +    + ++     +++++  +  
Sbjct: 219 H-------------HLFIEQSVKHTKPGGYLFFMIPNHLFESSQSD----KLKQFFKDKV 261

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GKVQLIN 426
            I A++ LP  +F     A  + +L  +  E +  G++ L N
Sbjct: 262 HINALLQLPKSIFKDEAHAKSILVLQKKGEETKAPGQILLAN 303


>gi|87198379|ref|YP_495636.1| putative type II DNA modification enzyme [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134060|gb|ABD24802.1| putative type II DNA modification enzyme [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1319

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 39/175 (22%)

Query: 145 LHPDTVPDRVMSNIYEHLI---------RRFGSEVSEGA------EDFMTPRDVVHLATA 189
           ++   +    + ++YE L+           F                + TP  +V     
Sbjct: 413 INWRDLKTEELGSVYEGLLEIRPSLTASGDFQLGTGAKGNDRKTSGSYYTPDSLVECLLD 472

Query: 190 LLLDPDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             L+P     + S               + DP CG+G FL  A   +AD  +  +     
Sbjct: 473 SALNPVLERAEASGVTPEEKVAAILDLKVIDPACGSGHFLLGAARRMADRVARLRNEDAG 532

Query: 241 V--------------PHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGS 280
                           HG +  P    +    + I  +    P   L  NI+ G 
Sbjct: 533 KEETQAALRDVVSRCIHGVDRNPMAVELAKVALWIESVSPGQPLGFLDANIRCGD 587


>gi|56475569|ref|YP_157158.1| N6 adenine-specific DNA methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|56311612|emb|CAI06257.1| N6 adenine-specific DNA methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 1511

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      + +  + TP+ +        L    A       +   + +P  G+  FL 
Sbjct: 562 FIYRLAGRDRQKSASYYTPQVLTRCLVKYALKELLADKTADDILKLKVVEPAMGSAAFLN 621

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHA--VCVAGMLIRR 263
           +A++ +A+     K   +    G+ +  +T+A  +    M +  
Sbjct: 622 EAVSQLAEAYLERKQLEL----GRRIPHDTYATELQKVRMYLAD 661


>gi|227496637|ref|ZP_03926913.1| methylase [Actinomyces urogenitalis DSM 15434]
 gi|226833832|gb|EEH66215.1| methylase [Actinomyces urogenitalis DSM 15434]
          Length = 944

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 58/210 (27%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH---------LATALLLDPDDAL 198
             +   V   ++E  +         G   + +P+++           L   L     D  
Sbjct: 309 SGISPTVFGGVFESTL--NPETRRAGGMHYTSPQNIHRVIDPLFLDALTAELEGILADTT 366

Query: 199 FKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADC----------------- 230
             E     R           T  DP  G+G FLT+    +                    
Sbjct: 367 VTERTRKTRLRRYQDKLASLTFLDPAAGSGNFLTETFICLRRLENKVLSVLQGPQTALEF 426

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLI--------------RRLESDPRRDLS 273
              G       +   HG E+     +V    + I              R +E  P RD +
Sbjct: 427 EGVGESAIKVQLAQFHGIEINDFAASVARTALWIAELQANAETAEIIQREVEDLPLRDAA 486

Query: 274 KNIQQG--STLSKDLFTGKRFHYCLSNPPF 301
             I+         DL    R  Y + NPPF
Sbjct: 487 TIIEGNALDMDWNDLLPASRCSYIMGNPPF 516


>gi|223933053|ref|ZP_03625046.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|223898240|gb|EEF64608.1| conserved hypothetical protein [Streptococcus suis 89/1591]
          Length = 317

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 44/260 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ L+ +             TP  +  + + L+        +  P    T+ +   GT
Sbjct: 68  RAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV-------DQLVPTQKVTVLEIGSGT 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +N              L   G E++     +  +      +    + D+S   
Sbjct: 121 GNLAQTILNA---------SQKDLDYLGIEVDDLLIDLSAS------IADVMQADISF-- 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +    +    L + P G               +    R+    P  ++ + 
Sbjct: 164 AQGDAVRPQILKESQ--VILGDLPIG-----------YYPDDQIASRYQVASP--NEHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+      G A ++  +  L + ++      ++ WL E   I A++ALP +
Sbjct: 209 AHHLLMEQSLKYL-EKDGFAILLAPNDLLTSPQSD----LLKGWLQEQANIVAMIALPPN 263

Query: 397 LFFRTNIATYLWILSNRKTE 416
           LF +  +A  +++L  +   
Sbjct: 264 LFGKAAMAKSIFVLQKKAAR 283


>gi|157127434|ref|XP_001654978.1| chromodomain helicase DNA binding protein [Aedes aegypti]
 gi|108882413|gb|EAT46638.1| chromodomain helicase DNA binding protein [Aedes aegypti]
          Length = 4467

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 13/153 (8%)

Query: 413  RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR---------RQILDIYVSREN-- 461
             K EE++     I+  + +   RN          +            +I      ++   
Sbjct: 1767 DKPEEKKEPPVFIDVEEYFVKYRNFSYLHCEWRTEDELFKGDKRVGNKIKRFLQKQQQQL 1826

Query: 462  GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
              F  + D   F    ++V R L +S   D  G       + W+ L P   S W      
Sbjct: 1827 NIFESL-DEEPFNPDFVEVDRVLDVSEHTDDDGKTVKHYLVKWKSL-PYEDSTWELEDDV 1884

Query: 522  MMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             + +I  Y        +S    + +    +   
Sbjct: 1885 DLPKIDQYYRFNKIPPKSEWKTKKRPHPDQWKA 1917


>gi|317181797|dbj|BAJ59581.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F57]
          Length = 545

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 82/254 (32%), Gaps = 36/254 (14%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLINVSHNSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       +++  ++     + + YE       +        + TP  +V   
Sbjct: 68  LKGVHNHQEL-ILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++        DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKK 304
           +    A+              R     ++   + + KD    K   +F    +NPP+GKK
Sbjct: 167 DAFAIALTK-----------KRIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKK 215

Query: 305 WEKDKDAVEKEHKN 318
           + +++    K+  N
Sbjct: 216 YNQNQKENFKQQFN 229


>gi|296126928|ref|YP_003634180.1| hypothetical protein Bmur_1902 [Brachyspira murdochii DSM 12563]
 gi|296018744|gb|ADG71981.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 404

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 21/199 (10%)

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F    F   + NPP+     +  D + K +             K S+    +      K 
Sbjct: 7   FAWGGFDVVIGNPPYETSRSEGIDNIIKNYLRDNY--------KTSEDKFDYYTFFMEKS 58

Query: 347 E-LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
             L  N  G  +++  S+ L    +     +IR++LL    I  I      + F+  + T
Sbjct: 59  SMLSKNETGIVSLITPSTYLMKPLS----KKIRQFLLFKHNILRIDEF-KGMVFKAVVPT 113

Query: 406 YLWILSNRKTEERRGKVQL---INATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-REN 461
            + I +         K+++   I   D +    NE    + I  D+  +  D Y +   +
Sbjct: 114 SIIIFNKTDEVNIDNKIKVRYNIFTRDDF---DNEEFNLKYIVQDRFNKEPDFYFNIYAD 170

Query: 462 GKFSRMLDYRTFGYRRIKV 480
             +  +L+     Y  +K+
Sbjct: 171 DNYYNILEKINKLYNVVKL 189


>gi|198454454|ref|XP_001359596.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
 gi|198132801|gb|EAL28746.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
          Length = 460

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 77/299 (25%), Gaps = 44/299 (14%)

Query: 97  RNNLESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIE----------- 144
            N L S++ +       +F  D  F  T+    K     +  +    ++           
Sbjct: 55  HNRLRSHVDTHHKEIARLFSSDVSFKITVETYNKHFSQREKVEKIETMDYLPIEGTVDLK 114

Query: 145 -------------LHPDTVP----DRVMSNI----YEHLIRRFGSEVSEGAEDFMTPRDV 183
                        L P  VP    D +   +      HLI+    +  +   +      +
Sbjct: 115 NPQVEWWYIEFWGLDPKAVPPVPDDILFGRLLAQGQRHLIKDLSLKKRKFIGNTSMDAQL 174

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             L             +        ++DP  GTG  L  A               ++   
Sbjct: 175 SLLMAN----------QAMVREGDLVFDPFVGTGSLLVSAAKFGGYVLGADIDYMMVHAQ 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
            +              +   L+     D   ++      +        F   +++PP+G 
Sbjct: 225 CRPSRISQRVRERDESIRANLKQYGCADRYMDVLVADFSNPLWHPRLLFDSIITDPPYGI 284

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLS 361
           +   +K   +K  K           P  S  S+  L   L          GGR    L 
Sbjct: 285 REATEKVETKKSAKEDTRSEDMVHYPSTSHYSLQSLYCDLLEFSAKHLKLGGRLVCWLP 343


>gi|46401635|ref|YP_006479.1| DarB [Enterobacteria phage P1]
 gi|33338662|gb|AAQ13985.1| DarB [Enterobacteria phage P1]
 gi|33338771|gb|AAQ14093.1| DarB [Enterobacteria phage P1]
          Length = 2255

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F + + N PFG              ++       P   +   GS      +   L+
Sbjct: 170 PNDSFDHVVGNVPFGG-------------RDNTRNIDKPYAEETDMGSY----FMLRMLD 212

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    IV  S       +GS    +R  L           LPT  F     +T +
Sbjct: 213 KIKPGGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVV 267

Query: 408 -WILSNRKTEERRGKVQLINATDL 430
             +L  +   E   K+ L++ + L
Sbjct: 268 DVVLMRKHPAEMAEKIPLVHESTL 291


>gi|308063540|gb|ADO05427.1| hypothetical protein HPSAT_03445 [Helicobacter pylori Sat464]
          Length = 1604

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 58/489 (11%), Positives = 140/489 (28%), Gaps = 68/489 (13%)

Query: 43   RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
            RL+   E         +        ++   +K        TS      +      +N+++
Sbjct: 752  RLKDIFEKNPEIF---HGFLDSLRGNIHQSIKEDEALDMITSHIITKPIFDAIFGDNIKN 808

Query: 103  YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                 S     + E           +    LY+  K    +          ++ N+Y   
Sbjct: 809  ---PISKALDKMVEKLSTLGLQGETKDLKNLYESVKT-EAMRAKSQKSQQELIKNLYNTF 864

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             +    + SE      TP +VV                 +      T++DP  GTG F+ 
Sbjct: 865  FKEAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTGTGSFIA 924

Query: 222  DAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGML---------IRRLESDPRR 270
              ++   +  S   +        +  ++    + + +  +          ++  ++    
Sbjct: 925  RLLSKENELISDEALKEKFLNHLYAFDIVLLAYYIALINITQAAQSRDGSLKNFKNIVLT 984

Query: 271  D-LSKNIQQGSTLSKDLFTGKRFH-------------YCLSNPPF--GKKWEKDKDAVEK 314
            D L    ++       +F   + +               + NPP+  G K + D +    
Sbjct: 985  DSLDIYEEKNDKGVLPIFEDLKENKEIKSTIEKQNIRVIIGNPPYSAGAKSQNDNNQNLS 1044

Query: 315  EHKNGELGRFGPGLPKIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              K  +      G    +   + +   L+             G    V++ S + +  A 
Sbjct: 1045 HPKLEKRVTEKYGKNSTAQVENTTRDTLIQSIYMASELLKDRGVLGFVVNGSFIDSKSAD 1104

Query: 372  SGESEIRRWLLENDLIEAIVAL--------------PTDLFFRTNIATYLWILSNRKTEE 417
                  R+ + +      ++ L                 +F  +     + I+   K   
Sbjct: 1105 G----FRKCVAKEFAHLYVLNLRGNARTSGEERRKEGDGIF-DSGSRATIAIVFFVKDTS 1159

Query: 418  RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------DIYVSRENGKFSRML 468
             +     I+  D+   ++ E K  R+ +      I            ++++ N  F +++
Sbjct: 1160 AKNST--IHYYDIGDYLKREEKLNRLAHFTNLDAIAFETITPNNKGDWINQRNDAFEKLI 1217

Query: 469  DYRTFGYRR 477
              +    R+
Sbjct: 1218 PLKRDKKRQ 1226


>gi|311741041|ref|ZP_07714866.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303843|gb|EFQ79921.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 944

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 78/274 (28%), Gaps = 64/274 (23%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA-----------TALLLD 193
            +   +   +  ++++  + +         E + + ++++                 L+ 
Sbjct: 313 FNWSEISPAIFGSLFQ--LVKSKEARRSDGEHYTSEKNILKTLEPLFLTELREKAERLIA 370

Query: 194 PDDALFKESPGMIRTL-----YDPTCGTGGFLTDAMNHVADCGSH--------------- 233
                 K       +L      DP CG+G FL  A   +    +                
Sbjct: 371 SRSTTVKALREFRDSLADYAFLDPACGSGNFLIVAYRELRKIETDLIVAIRRKEGTLDDM 430

Query: 234 ------HKIPPILVPHGQELEPETHAVCVAGMLI----------RRLESDPRR---DLSK 274
                  +   I   +G E+      +    M +          +R+ + P R    ++ 
Sbjct: 431 ALDVSFEQKLSIGQFYGIEVNWWPARIAETAMFLVDHQANKELAQRIGAAPERLPISITA 490

Query: 275 NIQQGSTLSKDL----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +I   + L+ D        K       NPPF  ++ K K   E   +       G     
Sbjct: 491 HIHHANALAVDWSLVVPEPKGETLVFGNPPFIGQYTKTKGQKEDMKRVWGKDYDGYLDYV 550

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +          ++L     G+ A V ++S 
Sbjct: 551 TGWHAQA--------MKLLSQRKGQFAYVTTNSI 576


>gi|297379675|gb|ADI34562.1| Modification methylase [Helicobacter pylori v225d]
          Length = 545

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 82/254 (32%), Gaps = 36/254 (14%)

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +E   ++   S  +   +   + L      + +    +SF D  +        +    + 
Sbjct: 8   IEEIARLVNVSHSSVHNWIKTNLLEKLEIDSKIYVKTSSFLDFCRNHLGKNKLNKYANKS 67

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            K    ++       +++  ++     + + YE       +        + TP  +V   
Sbjct: 68  LKGAHNHQEL-ILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE-- 121

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L   P D    ++        DP  G+G F+  A+              +   +G + 
Sbjct: 122 -QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDT 166

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKK 304
           +    A+              R     ++   + + KD    K   +F    +NPP+GKK
Sbjct: 167 DAFAIALTK-----------KRIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKK 215

Query: 305 WEKDKDAVEKEHKN 318
           + +++    K+  N
Sbjct: 216 YNQNQKENFKQCFN 229


>gi|169837057|ref|ZP_02870245.1| type II restriction endonuclease, putative [candidate division TM7
           single-cell isolate TM7a]
          Length = 660

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 16/193 (8%)

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF+ +  I   +     Y         E     + D + +  +E +   F     + +  
Sbjct: 374 DFEENGEIKHFDGFFEKYVFNAAIQEFEKKRSELQDYLRTTAHEDI---FTYIPPQKSNQ 430

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN--------HVA 228
             TPR VV+    +L   +  +F+       T  D    +G +LT+            + 
Sbjct: 431 IFTPRKVVNQMLNILEKENPGIFE---NPNLTFVDLYVKSGLYLTEIAKRLYRGLKSQIP 487

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D  S  K       +G       H +     + R  +S    +L           + +  
Sbjct: 488 DENSRFKHIFERQLYGFAPTQIIHDIAE-NYIYRGFDSISHDNLKFKDLTPD-FKEGIIG 545

Query: 289 GKRFHYCLSNPPF 301
             +F   + NPP+
Sbjct: 546 NMKFDVVIGNPPY 558


>gi|258567872|ref|XP_002584680.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237906126|gb|EEP80527.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 451

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG F   A +  A   +           GQ+ E +   V    ML   L
Sbjct: 210 PGKVFYDPFVGTGSFCVAAAHFGA--YTFGSDIDARSFKGQKEEGKPIGVVR-NMLQYGL 266

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           E++     +         +        F   + +PP+G +
Sbjct: 267 EANYLDAFTS-----DLTNTPFRDTSIFDGIICDPPYGIR 301


>gi|194015699|ref|ZP_03054315.1| gp42 [Bacillus pumilus ATCC 7061]
 gi|194013103|gb|EDW22669.1| gp42 [Bacillus pumilus ATCC 7061]
          Length = 249

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 13/159 (8%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+         ++      TPR V  L   +     ++          T YD   GTGG 
Sbjct: 58  EYFQDEHADRKTKK--QDFTPRSVADLLARVTDGGLEST---------TSYDGCAGTGGL 106

Query: 220 LTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-DLSKNIQ 277
                     +       P     H +E+        +  +L R + +     D+     
Sbjct: 107 TIAKWQSDRINHSPFDYKPSWYFYHCEEMSDRAIPFLLFNLLFRGMNAVVVHCDVLTRKS 166

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           +G+   ++          L+  P+     ++ D    + 
Sbjct: 167 KGAFFIQNDHDDFMHFSALNVLPYTDFTAEELDVTWDDD 205


>gi|257438349|ref|ZP_05614104.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199180|gb|EEU97464.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 2422

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 70/257 (27%), Gaps = 70/257 (27%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  S       T   V+           DA+ K        + +P+ G G F     
Sbjct: 880  EYAAARSSTLNAHYTSPVVIRSI-------YDAVEKMGFQSGN-ILEPSMGVGNFF---- 927

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279
                  G           +G EL+  T  +       A + +   E+  RRD        
Sbjct: 928  ------GMLPTSMADSRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 974

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        +   + N PFG+    DK             + G  +           
Sbjct: 975  ------------YDLAVGNVPFGQYKVNDKA----------YNKLGFSIHN--------- 1003

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +   K       GG  A V            S +S  R+ + E   +   + LP + F 
Sbjct: 1004 -YFFAKAIDQVRPGGVVAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFK 1057

Query: 399  --FRTNIATYLWILSNR 413
                T + + +  L  R
Sbjct: 1058 ANAGTEVVSDIIFLQKR 1074


>gi|195867544|ref|ZP_03079547.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195867982|ref|ZP_03079979.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195660378|gb|EDX53638.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|195660788|gb|EDX54042.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
          Length = 2547

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 70/253 (27%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPRGV--------MDGIYKTITDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  IQGSKVYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NGGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|149007806|ref|ZP_01831402.1| hypothetical protein CGSSp18BS74_04511 [Streptococcus pneumoniae
           SP18-BS74]
 gi|307128245|ref|YP_003880276.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           670-6B]
 gi|147760656|gb|EDK67629.1| hypothetical protein CGSSp18BS74_04511 [Streptococcus pneumoniae
           SP18-BS74]
 gi|306485307|gb|ADM92176.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           670-6B]
          Length = 317

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LF E    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFTEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGFKYLK----SDGYAIFLAPSDLLTSPQSDL----LKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|210134683|ref|YP_002301122.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132651|gb|ACJ07642.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 545

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++     T
Sbjct: 88  SSDLEKLGSHYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA-----T 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIVQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQQFN 229


>gi|56708636|ref|YP_170532.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110671108|ref|YP_667665.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|224457830|ref|ZP_03666303.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254371269|ref|ZP_04987271.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875502|ref|ZP_05248212.1| hemK, adenine-specific methylase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605128|emb|CAG46250.1| Adenine-specific methylase, HemK family [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110321441|emb|CAL09633.1| Adenine-specific methylase, HemK family [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151569509|gb|EDN35163.1| hypothetical protein FTBG_01043 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841501|gb|EET19937.1| hemK, adenine-specific methylase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159874|gb|ADA79265.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 314

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +++++  F     +  E  + PR  +     L+ +       +   +  ++ D   G+G 
Sbjct: 93  YILKKAWFAGMEFDIDERVIIPRSPI---AELIRNEFSPWINDIDDVT-SVLDLCTGSGC 148

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 N   D                 ++    A+ VA        +  +  LS  ++ 
Sbjct: 149 IGIACSNVFEDANITL------------VDISDDALAVAN------HNIKKHQLSDRVRA 190

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +   D   G++F   +SNPP+  K + D    E  ++
Sbjct: 191 IKSDLFDNLHGQKFDLIVSNPPYVDKQDLDTMPHEYHYE 229


>gi|253729882|ref|ZP_04864047.1| superfamily II DNA/RNA helicase [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253726329|gb|EES95058.1| superfamily II DNA/RNA helicase [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
          Length = 1572

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 5/177 (2%)

Query: 144  ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKES 202
            ++       +++  +Y+   +   +  ++      TP +VV      + L  +    K  
Sbjct: 838  DVEKAEDKQKIIITLYDKFFKTAFNSTTKKLGIVFTPVEVVDFIVKSVDLTLERHFGKNL 897

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--PILVPHGQELEPETHAVCVAGML 260
                  + DP  GTG F+   + ++ +     +I    I     QEL      + +    
Sbjct: 898  ASESVHILDPFTGTGTFMVRTLEYLKEQMKEGEISLADITRKFTQELHANE--IVLLSYY 955

Query: 261  IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            I  +  +   D     +QG T  + +     F   +      + +  + + ++++ K
Sbjct: 956  IAAINIEATFDDINGNEQGYTPFEGIVLTDTFETTVHEYSIDEYFIGNDERLKRQLK 1012


>gi|167972247|ref|ZP_02554524.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167974272|ref|ZP_02556549.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|167988936|ref|ZP_02570607.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|225551341|ref|ZP_03772287.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209290|gb|EDU06333.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018695|gb|EDU56735.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998170|gb|EDU67267.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225379156|gb|EEH01521.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 290

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           Y+   Y    L   N RN   ++  +    D  K  +    FS+   +L    L  K  +
Sbjct: 3   YHQLVYQAQLLLQKNQRNTQVAFELLYGLDDEVKDFYS---FSNNRLKLVDLSLECKYFE 59

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +  E   +   +R++   Y    RRF  + +  A           + T LL+D  + +
Sbjct: 60  LLN--EFINEKPLERILGYGY-FCGRRFYVDENVFAF---------RVETELLVDVINKI 107

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            K+S   I+++ D  CG+G        +  +         +      +   + H +    
Sbjct: 108 IKQSKHQIKSVIDVCCGSGVLGLSVKMNFNNLDVSLLDISLDAISNSKKNAQYHNI---- 163

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
                           N    S     L T KRF   + NPP+ K 
Sbjct: 164 -------------EGINYLHKSMQKYFLHTKKRFDLIICNPPYIKS 196


>gi|319779046|ref|YP_004129959.1| Methylase of polypeptide chain release factor [Taylorella
           equigenitalis MCE9]
 gi|317109070|gb|ADU91816.1| Methylase of polypeptide chain release factor [Taylorella
           equigenitalis MCE9]
          Length = 275

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 36/141 (25%), Gaps = 23/141 (16%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F           + PR    L     LD     F ++      + D   G+G      
Sbjct: 71  REFMGLELNVDNSVLIPRPDTELLVECALD-----FLKTTPTGARILDLGTGSGAIAISI 125

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N +  C            +  ++  E   V         +             +GS   
Sbjct: 126 ANFMPKCE----------VYAVDISKEALKVAYLNAKNHGVHIKFF--------EGSWFD 167

Query: 284 KDLFTGKRFHYCLSNPPFGKK 304
              +    F   +SNPP+   
Sbjct: 168 ALPYDVGTFDLIVSNPPYIAS 188


>gi|313637996|gb|EFS03287.1| N-6 DNA methylase [Listeria seeligeri FSL S4-171]
          Length = 336

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 53/321 (16%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K + +  + SS      +        +NFS  E+        +              +  
Sbjct: 42  KEVLQKEELSSEKQTKLEEYYGSLELENFSNEEIRKGLQLALLKGM-----------KHG 90

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 MTP  +  +   LL                ++ DP CGT   LT  +N +    
Sbjct: 91  IQVNHQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL---- 140

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGK 290
              K    +   G +++    ++ + G  ++R + +   +D   N+              
Sbjct: 141 -ELKDGLEIHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVVSDLPV 199

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F                    ++  K+ EL R        S    LF+       +   
Sbjct: 200 GF-----------------YPDDENAKSFELCR----EEGHSFAHFLFIEQGMRYTKP-- 236

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG    ++  +          +  I++    N  IE I+ LP  LF        + IL
Sbjct: 237 --GGYLFFLVPDAMFGTSDFAKVDKFIKK----NGHIEGIIKLPETLFKSEQARKSILIL 290

Query: 411 SN-RKTEERRGKVQLINATDL 430
               +  +   +V L N + L
Sbjct: 291 RKAAENVKPPKEVLLANLSSL 311


>gi|194743660|ref|XP_001954318.1| GF18217 [Drosophila ananassae]
 gi|190627355|gb|EDV42879.1| GF18217 [Drosophila ananassae]
          Length = 486

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 47/381 (12%), Positives = 98/381 (25%), Gaps = 52/381 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W   E +  DF+ ++F  ++      +       P      + +      +        
Sbjct: 10  LWFAQEHV--DFRISEFESIV------KMFGIQFRPVTEQTLKPFWLVEFPDEKTALLYA 61

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFSSTIARLEKAGLL 133
               +     E    +   +     L +++    D     F  D  F  T+    K    
Sbjct: 62  SRSIALRAIFELYAHSNKFSQFHERLRAHVTGNKDELATYFRPDTSFKITVETYNKHFSQ 121

Query: 134 YKICKNFSGIE------------------------LHPDTVP--------DRVMSNIYEH 161
            +  +    ++                        L P  VP         R++++   H
Sbjct: 122 REKIEKIETMDYLPIEGPVNLKNPLVEWWYIEFWGLDPTAVPPEPEEILFGRLLAHGQRH 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI+    +  +   +      +  L             +        ++DP  GTG  L 
Sbjct: 182 LIKELSLKQRKFIGNTSMDAQLSLLMAN----------QAMVQEGDLVFDPFVGTGSLLV 231

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A               ++    +              +   L+     D   ++     
Sbjct: 232 SAAKWGGYVLGADIDYMMVHARCRPSRISQKIREKDESIRANLKQYGCADRYMDVVVADF 291

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM- 340
            +        F   +++PP+G +   +K   +   K+          P  S  S+  L  
Sbjct: 292 SNPLWHPRISFDCIITDPPYGIREATEKVDAKANSKDSTRTDDMVHYPSTSHYSLQSLYG 351

Query: 341 HLANKLELPPNGGGRAAIVLS 361
            L          GGR    L 
Sbjct: 352 DLLEFAAKHLRLGGRLVCWLP 372


>gi|325300205|ref|YP_004260122.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
 gi|324319758|gb|ADY37649.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
          Length = 239

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 18/104 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E  +        +    F TP  +  L                    + +  PTCG+G  
Sbjct: 89  ELHMAYCSKPGQQANGQFFTPSHICELMV--------MCAAGKKETGQRMGGPTCGSGRL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           L     H           P     G+++      + V  ML+  
Sbjct: 141 LLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHG 174


>gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
            DSM 20306]
 gi|295968218|gb|EFG81467.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
            DSM 20306]
          Length = 1656

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 77/280 (27%), Gaps = 44/280 (15%)

Query: 144  ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES- 202
            E+   +   +V+  +YE   ++   + +E      TP ++V        D     F +  
Sbjct: 846  EVSSASGKQQVIKELYERFFQKAFKKQAESLGIVYTPVEIVDFILRAADDVSKIHFGKGL 905

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL--------------- 247
                  + DP  GT  F+   +          K   +   +  EL               
Sbjct: 906  TDEGVCILDPFAGTSTFMVRLL-----QSGLIKPEDLARKYANELFATEIMLLAYYVSAV 960

Query: 248  -EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----KDLFTGKRF---------- 292
                T+    A    R+ E++P       I    T       D+   + F          
Sbjct: 961  NIETTYNALRAEEAFRKGETEPEYVPFDGIALADTFQIHEEGDILDLEVFKNNNQRIERQ 1020

Query: 293  -----HYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 +  + NPP+  G+    D +A  K     +           +             
Sbjct: 1021 KTAPINVVIGNPPYSAGQHSANDNNANLKYPTLDKRIAETYAAKSTATNKNSLYDSYLRA 1080

Query: 346  LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 +  G   IV   S        +G+  IR  L E+ 
Sbjct: 1081 FRWATDRIGSQGIVAFVSNGGWLDGNTGDG-IRLSLAEDF 1119


>gi|289424058|ref|ZP_06425844.1| methyltransferase [Peptostreptococcus anaerobius 653-L]
 gi|289155483|gb|EFD04162.1| methyltransferase [Peptostreptococcus anaerobius 653-L]
          Length = 382

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 36/134 (26%)

Query: 204 GMIRTLYDPTCGTGGFLTDAM----------------------------NHVADCGSHHK 235
              R L DP CG+G  L +A                             +   D      
Sbjct: 192 RPGRILVDPMCGSGTILIEAAMIGMNMAPGMNREFISEKWRTIDKKIWWDVRRDAFDQLN 251

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++PE+  +      I  ++      ++          KD  + K +   
Sbjct: 252 DNEDFKIYGYDIDPESIKIAKHNAEIAGVDQYIDFAVADV--------KDFKSDKEYGMI 303

Query: 296 LSNPPFGKKWEKDK 309
           ++NPP+G++ E ++
Sbjct: 304 ITNPPYGERLEDEE 317


>gi|160942833|ref|ZP_02090073.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445885|gb|EDP22888.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1925

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 70/258 (27%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +       T   V+               +        + +P+ G G F    
Sbjct: 381 EEYAAARASTLNAHYTSPIVIRAI--------YDAVERMGFQSGNILEPSMGVGNFF--- 429

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                  G           +G EL+  T  +       A + +   E+  RRD       
Sbjct: 430 -------GMLPDSMADSRLYGVELDSITGRIAQKLYPQADITVAGFETTDRRDF------ 476

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                        +   + N PFG+    DK             + G  +          
Sbjct: 477 -------------YDLAIGNVPFGQYKVNDKA----------YNKLGFSIHN-------- 505

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +   K       GG  A V S   + +  + +     R+++ E   +   + LP D F
Sbjct: 506 --YFFAKTIDQIRPGGVIAFVTSHFTMDSKDSSA-----RKYMAERANLLGAIRLPNDAF 558

Query: 399 ---FRTNIATYLWILSNR 413
                T + + +  L  R
Sbjct: 559 KANAGTEVVSDIIFLQKR 576


>gi|291548619|emb|CBL24881.1| DNA methylase [Ruminococcus torques L2-14]
          Length = 2623

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 69/258 (26%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 1372 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFF--- 1420

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+P +  +       A + +   E+  RRD       
Sbjct: 1421 -------GMLPEKMQNSRLYGVELDPVSGRIAKQLYPKADITVGGFETTDRRDF------ 1467

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         F   + N PFG+   +DK                         +   
Sbjct: 1468 -------------FDLAIGNVPFGQYQVRDK--------------------AYDKLNFSI 1494

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +   + LP D F
Sbjct: 1495 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAF 1549

Query: 399  ---FRTNIATYLWILSNR 413
                   + + +  L  R
Sbjct: 1550 KKNAGAEVVSDIIFLQKR 1567


>gi|163756699|ref|ZP_02163810.1| hypothetical protein KAOT1_00510 [Kordia algicida OT-1]
 gi|161323374|gb|EDP94712.1| hypothetical protein KAOT1_00510 [Kordia algicida OT-1]
          Length = 1579

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 35/166 (21%)

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  ++++P+ G G  L  A   +       K     +   Q  +   +         
Sbjct: 1345 GMDTADSIFEPSAGNGLLLVGANPKITHVNEIDKSRKKSLEFQQFQKITMNNGA------ 1398

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                                        K F   ++NPPF K    ++D ++KEH   + 
Sbjct: 1399 --------------------QPFPNEMEKAFDVVVTNPPFAK---WEEDKIDKEHIIKKY 1435

Query: 322  GRFGPGLPKISDGSMLFLMHLANKLELPP-NGGGRAAIVLSSSPLF 366
                 GL +      L L H+ + L L      G+ AI++     F
Sbjct: 1436 FNNTRGLVQH-----LRLEHIMSGLALRTMKDNGKCAIIIMGHLYF 1476


>gi|315303359|ref|ZP_07873978.1| adenine-specific methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628274|gb|EFR96788.1| adenine-specific methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 219

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 73/225 (32%), Gaps = 36/225 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-S 266
           ++ DP CGT   LT  +N +       K    +   G +++    ++ + G  ++R + +
Sbjct: 4   SILDPACGTANLLTTVINQL-----ELKEGMEIHASGVDVDDLLISLALVGADLQRQKMT 58

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              +D   N+               F                    ++  K+ EL R   
Sbjct: 59  LLHQDGLANLLVDPVDVVVSDLPVGF-----------------YPDDENAKSFELCR--- 98

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                S    LF+       +     GG    ++  +          +  I++    N  
Sbjct: 99  -EEGHSFAHFLFMEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVDKFIKK----NGH 149

Query: 387 IEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDL 430
           IE I+ LP  LF        + IL    +  +   +V L N + L
Sbjct: 150 IEGIIKLPETLFKSEQARKSILILRKAAENVKPPKEVLLANLSSL 194


>gi|294791107|ref|ZP_06756265.1| putative Helicase [Scardovia inopinata F0304]
 gi|294459004|gb|EFG27357.1| putative Helicase [Scardovia inopinata F0304]
          Length = 1805

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNN 99
            +++    +     +R+        +  +    +    S    + +S      G +   NN
Sbjct: 817  KQISQEFDSFLHGLRDTLNPNITKDDAVGMLSQHILTSPIFDALFSHEKDSSGKSFIENN 876

Query: 100  LES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              S  +   ++  +   +  D +  + +L                  + +     ++ N+
Sbjct: 877  PVSQALMPITELLRPKIKAADPNDDLRQLYSQVRTSAQAVR------NDEAARQTLVRNL 930

Query: 159  YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTG 217
            YE   R      ++      TP ++V+    L+ +     F +     R T+ DP  GTG
Sbjct: 931  YESFFRTAFKSDADKLGIVYTPLEIVNYILHLVDNKLTEHFGKHLEDDRVTILDPFTGTG 990

Query: 218  GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
             F+ + +       +  +          E+    + + +  +
Sbjct: 991  TFIVELIRSGLISPNKLQRKYRSEIFANEIMLLAYYIAMVNI 1032


>gi|195153234|ref|XP_002017534.1| GL21470 [Drosophila persimilis]
 gi|194112591|gb|EDW34634.1| GL21470 [Drosophila persimilis]
          Length = 486

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 106/387 (27%), Gaps = 64/387 (16%)

Query: 15  IWKNAEDLWGDFKHTDFGKV--ILPFTLLRRLECALEPTRSAVR----EKYLAFGGSNID 68
           +W   E +  DF+ ++F  +  +  F   RR+   L      V     +  L +   +I 
Sbjct: 7   LWFAQEHV--DFRISEFESLAKMFGFQF-RRVSEQLLKPFWLVEFPNEKTALQYASRSIA 63

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFDFSSTIARL 127
           L +  ++  +S                  N L S++ +       +F  D  F  T+   
Sbjct: 64  LRAIFELYSHSNTLPE-----------FHNRLRSHVDTHHKEIARLFSSDVSFKITVETY 112

Query: 128 EKAGLLYKICKNFSGIE------------------------LHPDTVP----DRVMSNI- 158
            K     +  +    ++                        L P  VP    D +   + 
Sbjct: 113 NKHFSQREKVEKIETMDYLPIEGTVDLKNPQVEWWYIEFWGLDPKEVPPVPDDILFGRLL 172

Query: 159 ---YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
                HLI+    +  +   +      +  L             +        ++DP  G
Sbjct: 173 AQGQRHLIKDLSLKKRKFIGNTSMDAQLSLLMAN----------QAMVREGDLVFDPFVG 222

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L  A               ++    +              +   L+     D   +
Sbjct: 223 TGSLLVSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDESIRANLKQYGCADRYMD 282

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +      +        F   +++PP+G +   +K   +K  K           P  S  S
Sbjct: 283 VLVADFSNPLWHPRLLFDSIITDPPYGIREATEKVETKKSAKEDTRSEDMVHYPSTSHYS 342

Query: 336 MLFLMH-LANKLELPPNGGGRAAIVLS 361
           +  L   L          GGR    L 
Sbjct: 343 LQSLYCDLLEFSAKHLKLGGRLVCWLP 369


>gi|213962067|ref|ZP_03390332.1| adenine specific DNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213955420|gb|EEB66737.1| adenine specific DNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 1002

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 46/248 (18%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  + + YE  +  F  +V +    + TP  VV+     L       F    G+  
Sbjct: 293 KDASKDPIVHFYEDFLEAFDPQVRKDLGVWYTPLPVVNFMVRTLDTLLKEQFHLPQGIAD 352

Query: 208 T---------------------------LYDPTCGTGGFLTDAMNHVADC-GSHHKIPPI 239
           T                           + DP  GTG FL   + ++A    S   I   
Sbjct: 353 TSKIKVQTQQDNKIAGFDIEEKEYHRVQILDPATGTGTFLAQIIEYIAQQFASQQGIWQN 412

Query: 240 LV-------PHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            V        +G EL   ++A+      ML+       +  ++++  +      +     
Sbjct: 413 YVQEHLLPRLNGFELLMASYAIAHLKLDMLL------SQTQITQSTNRIQIYLTNSLEEP 466

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNG-ELGRFGPGLPKISDGSMLFLMHLANKLELP 349
                L    +      + + ++++      +G         + GS  ++M+L    +  
Sbjct: 467 TPDRSLPLARWLSDEANEANRIKRDTPVMCIIGNPPYNGSSTNKGS--WIMNLMEDYKKE 524

Query: 350 PNGGGRAA 357
           PN   + A
Sbjct: 525 PNSKKKLA 532


>gi|330831983|ref|YP_004400808.1| hypothetical protein SSUST3_0142 [Streptococcus suis ST3]
 gi|329306206|gb|AEB80622.1| conserved hypothetical protein [Streptococcus suis ST3]
          Length = 317

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 44/260 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ L+ +             TP  +  + + L+        +  P    T+ +   GT
Sbjct: 68  RAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV-------DQLMPTQKVTVLEIGSGT 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +N              L   G E++     +  +      +    + D+S   
Sbjct: 121 GNLAQTILNA---------SQKELDYLGIEVDDLLIDLSAS------IADVMQADISF-- 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +    +    L + P G               +    R+    P  ++ + 
Sbjct: 164 AQGDAVRPQILKESQ--VILGDLPIG-----------YYPDDQIASRYQVASP--NEHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+      G A ++  +  L + ++      ++ WL E   I A++ALP +
Sbjct: 209 AHHLLMEQSLKYL-EKDGFAILLAPNDLLTSPQSD----LLKGWLQEQANIVAMIALPPN 263

Query: 397 LFFRTNIATYLWILSNRKTE 416
           LF +  +A  +++L  +   
Sbjct: 264 LFGKVAMAKSIFVLQKKAAR 283


>gi|16080000|ref|NP_390826.1| nucleic acid methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310892|ref|ZP_03592739.1| hypothetical protein Bsubs1_16086 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315218|ref|ZP_03597023.1| hypothetical protein BsubsN3_15987 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320136|ref|ZP_03601430.1| hypothetical protein BsubsJ_15903 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324417|ref|ZP_03605711.1| hypothetical protein BsubsS_16057 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3916031|sp|P37876|YTXK_BACSU RecName: Full=Uncharacterized protein ytxK
 gi|2293239|gb|AAC00317.1| YtxK [Bacillus subtilis]
 gi|2635432|emb|CAB14926.1| putative nucleic acid methyltransferase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 329

 Score = 40.5 bits (93), Expect = 0.83,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 41/222 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLE 265
           T+ DP  GTG  L   +N +++  ++          G E++     +    A +L + LE
Sbjct: 121 TILDPALGTGNLLFTVLNQLSEKTANS--------FGIEIDDVLLKIAYAQANLLKKELE 172

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
              +  L           + LF        + + P G  +  D+ A   E K  E   F 
Sbjct: 173 LFHQDSL-----------EPLFID-PVDTVICDLPVG-YYPNDEGAEAFELKADEGHSFA 219

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                              +       GG    ++ +    + ++G    +++++  +  
Sbjct: 220 H-------------HLFIEQSVKHTKPGGYLFFMIPNHLFESSQSG----KLKQFFKDKV 262

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
            I A++ LP  +F     A  + +L  + +  +  G++ L N
Sbjct: 263 HINALLQLPKSIFKDEAHAKSILVLQKQGENTKAPGQILLAN 304


>gi|254779145|ref|YP_003057250.1| M.HpyAVII, type II adenine specific methyltransferase [Helicobacter
           pylori B38]
 gi|254001056|emb|CAX29002.1| M.HpyAVII, type II adenine specific methyltransferase [Helicobacter
           pylori B38]
          Length = 545

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 116/355 (32%), Gaps = 54/355 (15%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           + +        N S  S+     TN        + +    +SF D  +        +   
Sbjct: 5   ALLIEEIAHLINVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYA 64

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +  K+   ++       +++  ++     + + YE       +        + TP  +V
Sbjct: 65  NKSLKSVHNHQEL-ILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNGIV 120

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                L   P D    ++        DP  G+G F+  A+              +   +G
Sbjct: 121 E---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYG 163

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            + +    A+       +R++   R D    +Q+     K      +F    +NPP+GKK
Sbjct: 164 YDTDAFAVALTK-----KRIKERYRLDCLNIMQKDFLSLKHTP---QFDCIFTNPPWGKK 215

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           + +++    K+  N         L +  D + LF +   N L+   + G    ++L  S 
Sbjct: 216 YNQNQKENFKQQFN---------LSQSLDSASLFFVASLNCLKENAHLG----LLLPESC 262

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L          ++R   L    I +++      F          +L     ++++
Sbjct: 263 L----NIDAFKKMREMAL-KFHIRSLIDF-NKPFKNLMTKAVGLVLKKTPNKDQK 311


>gi|300777180|ref|ZP_07087038.1| res subunit family type III restriction enzyme [Chryseobacterium
           gleum ATCC 35910]
 gi|300502690|gb|EFK33830.1| res subunit family type III restriction enzyme [Chryseobacterium
           gleum ATCC 35910]
          Length = 1345

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 113/385 (29%), Gaps = 79/385 (20%)

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS--KNIQQGSTLSKDLFTGKRFHYCL 296
            +     E+   T  +     ++    S   R        +QG+           +   +
Sbjct: 2   NVSISAFEINETTAKIAK---ILHPEASINVRSFETEFIDEQGNKNEIYQH----YDLII 54

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+G            EH+      F  GL + S  S  +  +   +        G  
Sbjct: 55  GNPPYG------------EHRG-----FYKGLGEESKISK-YEDYFVKRSLDVLKHDGIL 96

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL S  L           ++ +            LPT  F  T + T +  L     +
Sbjct: 97  AMVLPSGWLNRQNNLKNAELVKAF-----------RLPTGAFAGTKVGTDIIFLRKDSQK 145

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
                    N +D +     E   + I+ +   R+        +  +F RM  Y   G  
Sbjct: 146 IAH------NISDHF-----ERNPQNILGE--IRE--------KPNRFGRMELY-VHGNL 183

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF-WLDILKPMMQQIYPYGWAESF 535
              + +  R+  +     +  L  D+ +  L P  Q+   +   K  + +     + E  
Sbjct: 184 DEALSQLQRLQEVKKTERIGNLFEDLLYDNLEPEKQADNIVSAKKSDLGKTAEIDFVEVQ 243

Query: 536 VK-----------------ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
            K                    ++++ K L+ + S++              +AD V   +
Sbjct: 244 NKIRAVLSTLNDIKFKSLAILKETDKYKKLQGQLSENPKKFNQEQLSEILEKADRVIQSH 303

Query: 579 GEWIPDTNLTEYENVPYLESIQDYF 603
            +   D+           + +  Y 
Sbjct: 304 -QTKKDSEYRIQTKPEIKKGVLKYL 327


>gi|210062467|ref|YP_002300484.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|134270009|emb|CAL91882.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 262

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 13/138 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + + ++E L      +  +    F+TP D+  L T ++       +K        + D 
Sbjct: 112 DIFNELFEDLF--LTGKKGDSFGQFLTPTDISELLTDIVYTTSKDKYK--------IADS 161

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---LEPETHAVCVAGMLIRRLESDPR 269
             GTG  +   +  +        I  + + +  +   +     A  +  M+   L+    
Sbjct: 162 CAGTGSLIFPLIKRIFFKEGFEGIQKVELFYNDKDSFVSQLFIAQILTNMIYHNLDFKSL 221

Query: 270 RDLSKNIQQGSTLSKDLF 287
                N        K LF
Sbjct: 222 HVYIGNAITEYDTVKTLF 239


>gi|10954739|ref|NP_066674.1| hypothetical protein pRi1724_p094 [Agrobacterium rhizogenes]
 gi|10567403|dbj|BAB16212.1| riorf93 [Agrobacterium rhizogenes]
          Length = 1693

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 63/234 (26%), Gaps = 54/234 (23%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGF--LTDAMNHVADCGSHHKIPPILVPHGQE 246
             ++    A  +        + +P  GTG F  L  A                    G E
Sbjct: 165 EFIIRAIWAGLQRMGWRGGRVLEPGIGTGLFPALMPAA-----------FRDRTFVTGVE 213

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L+P T  +                     I  G     DL     +   + NPPF  +  
Sbjct: 214 LDPVTARIVKL------------LQPKARIINGDFARTDLAP--IYDLAIGNPPFSDR-- 257

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                V  +     LG             +    +   +       G  AA V SS  + 
Sbjct: 258 ----PVRSDRTYRSLG-------------LRLHDYFIARSIDLLKPGALAAFVTSSGTMD 300

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
              A +     R ++     + A + +P   F     +++   L     RK  E
Sbjct: 301 KADATA-----REYIARTADLIAAIRMPEGSFRRDAGSDVVVDLLFFRKRKVGE 349


>gi|324501460|gb|ADY40651.1| RB1-inducible coiled-coil protein 1 [Ascaris suum]
          Length = 1165

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 13/180 (7%)

Query: 429 DLWTSIRNEGKKRRIINDDQRRQI--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           +  T    E +  R + ++Q+ +I  L +Y        +++   +   ++   +      
Sbjct: 780 EEGTKRDRELEDLREVLEEQQAEINALRVYKESTENAIAKLESEKAELFKTFTIEHE--- 836

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
              ++   +A L +D   RK     +   L       ++   +  A      + ++ E +
Sbjct: 837 ---VEVERMASLHSDEMKRK---EKEIDSLKAALHKARETRTHAQATEPEDSASRNEEIR 890

Query: 547 TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVRE 606
               K  KS +   +     K  +AD +  +  E   D  +   E    +  ++    RE
Sbjct: 891 ATFEKEYKSRMQFLVKGLEEK--KADEIARIKKEAEFDLRMKSKEYEEKIRELEQLLQRE 948


>gi|89256954|ref|YP_514316.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. holarctica LVS]
 gi|115315316|ref|YP_764039.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|118496921|ref|YP_897971.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. novicida U112]
 gi|134301405|ref|YP_001121373.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|156503148|ref|YP_001429213.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167010048|ref|ZP_02274979.1| hypothetical adenine-specific methylase YfcB [Francisella
           tularensis subsp. holarctica FSC200]
 gi|194324148|ref|ZP_03057922.1| hypothetical adenine-specific methylase YfcB [Francisella
           tularensis subsp. novicida FTE]
 gi|208780371|ref|ZP_03247712.1| hypothetical adenine-specific methylase YfcB [Francisella novicida
           FTG]
 gi|254368216|ref|ZP_04984236.1| adenine-specific methylase, hemK family [Francisella tularensis
           subsp. holarctica 257]
 gi|254372283|ref|ZP_04987774.1| modification methylase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254373762|ref|ZP_04989245.1| hypothetical protein FTDG_01546 [Francisella novicida GA99-3548]
 gi|290954115|ref|ZP_06558736.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295312485|ref|ZP_06803254.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89144785|emb|CAJ80123.1| Adenine-specific methylase, HemK family [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130215|gb|ABI83402.1| HemK family, adenine-specific methylase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118422827|gb|ABK89217.1| modification methylase, HemK family [Francisella novicida U112]
 gi|134049182|gb|ABO46253.1| methyltransferase, HemK family [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254026|gb|EBA53120.1| adenine-specific methylase, hemK family [Francisella tularensis
           subsp. holarctica 257]
 gi|151570012|gb|EDN35666.1| modification methylase [Francisella novicida GA99-3549]
 gi|151571483|gb|EDN37137.1| hypothetical protein FTDG_01546 [Francisella novicida GA99-3548]
 gi|156253751|gb|ABU62257.1| methyltransferase, HemK family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|194321595|gb|EDX19079.1| hypothetical adenine-specific methylase YfcB [Francisella
           tularensis subsp. novicida FTE]
 gi|208743739|gb|EDZ90042.1| hypothetical adenine-specific methylase YfcB [Francisella novicida
           FTG]
 gi|328676394|gb|AEB27264.1| Adenine-specific methylase, HemK family [Francisella cf. novicida
           Fx1]
          Length = 314

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +++++  F     +  E  + PR  +     L+ +       +   +  ++ D   G+G 
Sbjct: 93  YILKKAWFAGMEFDIDERVIIPRSPI---AELIRNEFSPWINDIDDVT-SVLDLCTGSGC 148

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 N   D                 ++    A+ VA        +  +  LS  ++ 
Sbjct: 149 IGIACSNVFEDANITL------------VDISDDALAVAN------HNIKKHQLSDRVRA 190

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +   D   G++F   +SNPP+  K + D    E  ++
Sbjct: 191 IKSDLFDNLHGQKFDLIVSNPPYVDKQDLDTMPHEYHYE 229


>gi|325002332|ref|ZP_08123444.1| hypothetical protein PseP1_26385 [Pseudonocardia sp. P1]
          Length = 1584

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLAT----ALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + R      + +  + TP  +           LLD D         +  T+ +P  G+G
Sbjct: 526 FVFRLAGRERQQSASYYTPEVLTRFTVGQALEELLDQDGTRTSAEEILGLTVCEPALGSG 585

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
            F  +A+  +A+     +   +    G+ ++P+ +
Sbjct: 586 AFAIEAVRQLAEQYLKRRQEEL----GERIDPDEY 616


>gi|320531412|ref|ZP_08032378.1| hypothetical protein HMPREF9057_00242 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136365|gb|EFW28347.1| hypothetical protein HMPREF9057_00242 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 1530

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 8/143 (5%)

Query: 130 AGLLYKICKNFSGIELH--PDTVPDRVMSNIYE--HLIRRFGSEVSEGAEDFMTPRDVVH 185
             +   + K     +     D V     +  YE    + R      + +  F TP  +  
Sbjct: 494 WVVPEDVMKGLEEKDFVTVEDEVTGERRNVTYEKGQFVYRLSGRDRQRSASFYTPEVLTR 553

Query: 186 LAT----ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
                    LLD D         +  T+ +P  G+G F  +A+  +A+     +   +  
Sbjct: 554 FTVQQALEELLDQDGRTTTAEEILHLTVCEPALGSGAFAIEAVRQLAEQYLSRRERELGR 613

Query: 242 PHGQELEPETHAVCVAGMLIRRL 264
               E  P   A   A + + ++
Sbjct: 614 RVDPEERPRELAKVKAFIALHQV 636


>gi|254369814|ref|ZP_04985824.1| hypothetical protein FTAG_01155 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122773|gb|EDO66902.1| hypothetical protein FTAG_01155 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 314

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +++++  F     +  E  + PR  +     L+ +       +   +  ++ D   G+G 
Sbjct: 93  YILKKAWFAGMEFDIDERVIIPRSPI---AELIRNEFSPWINDIDDVT-SVLDLCTGSGC 148

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 N   D                 ++    A+ VA        +  +  LS  ++ 
Sbjct: 149 IGIACSNVFEDANITL------------VDISDDALAVAN------HNIKKHQLSDRVRA 190

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +   D   G++F   +SNPP+  K + D    E  ++
Sbjct: 191 IKSDLFDNLHGQKFDLIVSNPPYVDKQDLDTMPHEYHYE 229


>gi|145298911|ref|YP_001141752.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851683|gb|ABO90004.1| adenine-specific methylase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 313

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 23/152 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +        E  + PR  +     ++ +      K  P     + D   G+G       +
Sbjct: 101 YAGWEFYVDERVLIPRSPI---AEMVANRFAPFLKHEPT---RIMDLCTGSGCIAIIMAH 154

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D                ++  +   V    +    LE       S  ++       D
Sbjct: 155 EFPDAEVDA----------IDISVDALNVAERNITDHGLEQQVIPIRSDLMR-------D 197

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           L  G ++   +SNPP+    +      E  H+
Sbjct: 198 LPVGDKYDLIVSNPPYVDSEDMSDLPQEFRHE 229


>gi|123965296|ref|YP_001010377.1| RNA methylase family protein [Prochlorococcus marinus str. MIT
           9515]
 gi|123199662|gb|ABM71270.1| Putative RNA methylase family UPF0020 [Prochlorococcus marinus str.
           MIT 9515]
          Length = 374

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 60/184 (32%), Gaps = 49/184 (26%)

Query: 209 LYDPTCGTGGFLTDAMN-------------------------HVADCGSHHK----IPPI 239
           L D  CG+G FL +A+N                         ++ +     +       +
Sbjct: 193 LIDLMCGSGTFLIEAINQTLQVPLKSQHFYLFENWLDFNKDIYLKEKTKAQQKVFSFDKL 252

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF----HYC 295
               G E+  +      A + +  LE+                  D FT  +F       
Sbjct: 253 SKVIGCEINKDVFNQAKANISLAGLENYIEL------------QNDNFTNIKFKSSEGLI 300

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK----ISDGSMLFLMHLANKLELPPN 351
           + NPP+GKK  ++ + +      G+  +      +      +  +   + + + L++P +
Sbjct: 301 VCNPPYGKKLGQENELITLYENIGDFLKGNYSGWEFWLLSGNPKLTRYLKMKSSLKIPVS 360

Query: 352 GGGR 355
            GG 
Sbjct: 361 NGGI 364


>gi|213021362|ref|ZP_03335809.1| hypothetical protein Salmonelentericaenterica_00661 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 216

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 13/138 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + + ++E L      +  +    F+TP D+  L T ++       +K        + D 
Sbjct: 66  DIFNELFEDLF--LTGKKGDSFGQFLTPTDISELLTDIVYTTSKDKYK--------IADS 115

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---LEPETHAVCVAGMLIRRLESDPR 269
             GTG  +   +  +        I  + + +  +   +     A  +  M+   L+    
Sbjct: 116 CAGTGSLIFPLIKRIFFKEGFEGIQKVELFYNDKDSFVSQLFIAQILTNMIYHNLDFKSL 175

Query: 270 RDLSKNIQQGSTLSKDLF 287
                N        K LF
Sbjct: 176 HVYIGNAITEYDTVKTLF 193


>gi|28374227|gb|AAH46012.1| Trmt11 protein [Danio rerio]
          Length = 384

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 85/340 (25%), Gaps = 32/340 (9%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
            T    +EK   +  + +  +    V   +    S + L   G T T     S +   S+
Sbjct: 40  ETPETFKEKSPFWHLNGLSEDDIRSVMSRTVCGKSAFELWGHGKT-TEELRRSLLEYRSE 98

Query: 110 NAKAIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTV------PDRVMSN----- 157
           N     +        +    K        K    ++  P         P+ +        
Sbjct: 99  NMAPYLQQNSTYKINVYTFNKTLEFKDRIKKIDALDFLPFEGTVNLKDPEHIFCLLEDYG 158

Query: 158 ----------IYEHLIRRFGSEVSEGAEDF-MTPRDVVHLATALLLDPDDALFKESPGMI 206
                     +Y +  R       E    + +  R  +   +                  
Sbjct: 159 TDPNDIPEEPVYVYFGRWIADGQRELIRSYSVKKRHFIGNTSMDAGLSFIMANHAKVKPN 218

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  GTG  L    +  A           +   G+              +   L  
Sbjct: 219 DLVYDPFVGTGSLLVACSHFGAYVCGTDIDYNTIHGIGKASRKNQKWRGPDENIRANLRQ 278

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               +L  ++              +F   +++PP+G +    +    K+         G 
Sbjct: 279 YGAENLYVDVMVSDASKLVWRRNAQFDAIITDPPYGIRESTRRTGSHKDIIKPPEDFSGE 338

Query: 327 GLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLS 361
               +S           L++ A    +    GGR    L 
Sbjct: 339 SHVPVSMAYHLSDIFADLLNFAAHHLVL---GGRLVYWLP 375


>gi|317009412|gb|ADU79992.1| adenine specific DNA methyltransferase [Helicobacter pylori India7]
          Length = 2866

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 120/401 (29%), Gaps = 76/401 (18%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            + TP     L    +    D L   +    + +++P+ GTG F+           +H   
Sbjct: 999  YYTP----KLIIDSIYQALDHLGFNNDNYQKEIFEPSLGTGKFI-----------AHAPS 1043

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   G EL+P              + +   + L  N    +T  ++    + +   +
Sbjct: 1044 DKNYRFSGTELDP--------------ISASISQFLYPNQVIQNTALENHQFYQDYDAFV 1089

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             NPP+G       +  +KE  N  +  +  G                 +L+      G  
Sbjct: 1090 GNPPYGNHKIYSYN--DKELSNESVHNYFLGK-------------AIKELK----DDGIG 1130

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            A V+SS  +      +   ++R  + +N      + LP  +F  T       I+  +K  
Sbjct: 1131 AFVVSSWFM-----DAKNPKMREHIAQNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGV 1185

Query: 417  ERRGKVQLINATDLWTSIRNEGKKRRIIN----------DDQRRQILDIYVS---RENGK 463
            E+        A   +  I +      +               + +I++   S    +  K
Sbjct: 1186 EKATNQSFTKAMPYYDKIVDSLDDDTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQEK 1245

Query: 464  FSRM---LDYRTFGYRRIK-------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
              R    +D   FGY           + +  + +  L++  L     +     L  L   
Sbjct: 1246 LQRWYEKIDTTNFGYSEQDYKIIKDFMDKVGKNNIHLNEQTLNEYFINHPENILGRLSLE 1305

Query: 514  FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                  +   +QIY Y       +    S        K  K
Sbjct: 1306 KTRYSFEINGEQIYKYELQALEDESLDLSQALNQAIEKLPK 1346


>gi|332974669|gb|EGK11586.1| type II restriction modification enzyme methyltransferase [Kingella
           kingae ATCC 23330]
          Length = 311

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 13/97 (13%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F  I+     +   +M  +Y   + ++     +     +TP  V  +   +L      
Sbjct: 212 NIFKSIDGFGGHI--DIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQML------ 262

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               +      + D   G+ GFL  AM  +     + 
Sbjct: 263 ----NIKANNKVMDLATGSAGFLISAMELMIQDAENQ 295


>gi|209554022|ref|YP_002284417.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541523|gb|ACI59752.1| methyltransferase, HemK family [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 290

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           Y+   Y    L   N RN   ++  +    D  K  +    FS+   +L    L  K  +
Sbjct: 3   YHQLVYQAQLLLQKNQRNTQVAFELLYGLDDEVKDFYS---FSNNRLKLVDLSLECKYFE 59

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +  E   +   +R++   Y    RRF  + +  A           + T LL+D  + +
Sbjct: 60  LLN--EFINEKPLERILGYGY-FCGRRFCVDENVFAF---------RVETELLVDVINKI 107

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            K+S   I+++ D  CG+G        +  +         +      +   + H +    
Sbjct: 108 IKQSTHQIKSVIDVCCGSGVLGLSVKMNFNNLDVSLLDISLDAISNSKKNAQYHNI---- 163

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
                           N    S     L T KRF   + NPP+ K 
Sbjct: 164 -------------EGINYLHKSMQKYFLHTKKRFDLIICNPPYIKS 196


>gi|322514192|ref|ZP_08067255.1| endonuclease-methyltransferase fusion protein [Actinobacillus ureae
           ATCC 25976]
 gi|322119932|gb|EFX91938.1| endonuclease-methyltransferase fusion protein [Actinobacillus ureae
           ATCC 25976]
          Length = 1104

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 36/256 (14%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           E        ++REKY      NID++ ++      +Y   +  + +            Y+
Sbjct: 256 ETNFTKYSDSIREKY-GIVDENIDVKKYLFALQTYYYILIKLLIHSFIKDAVNPQFNIYL 314

Query: 105 ------------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--------NFSGIE 144
                           ++  + F +  F       EK  +                +   
Sbjct: 315 LSDIRYVVDLFEGKEQNDIISNFFEIHFYEWFTYSEKFDIGIINSTLQEIILKYELASFV 374

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L+P+++ D V+  IY  LI      +     ++ TP      A   +LD        +  
Sbjct: 375 LNPESMQD-VLQEIYMGLIP---DNLRHLMGEYFTP----DWAVEFVLD----KIGFTGD 422

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLI 261
           + + L DPTCG+G FL  A+  + +  +        +     G ++ P +     A  ++
Sbjct: 423 IDKRLCDPTCGSGAFLLQAIKRIKNNKTVEISDIQKITNNIVGFDINPISAVSAKANYIL 482

Query: 262 RRLESDPRRDLSKNIQ 277
             L     +    N +
Sbjct: 483 ALLSYSYEKIDEINEK 498


>gi|302520232|ref|ZP_07272574.1| type IIS restriction enzyme [Streptomyces sp. SPB78]
 gi|302429127|gb|EFL00943.1| type IIS restriction enzyme [Streptomyces sp. SPB78]
          Length = 1166

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+ R  S +++  E ++ P           +D +    K S      + DP CG+G  L
Sbjct: 260 WLLNRPASRLADQMEYYIAP-----------VDEETDYLKVSSPEKLKIIDPACGSGHML 308

Query: 221 TDAMNHVADCGSHHKIPPILV--------PHGQELEPETHAVCVAGMLIRR 263
           T A + +          P  +         +G E++P   A+    + ++ 
Sbjct: 309 TYAFDLLYAIYEEEGYAPSDIPALILSNNLYGTEIDPRAGALAAFALTMKG 359


>gi|217034757|ref|ZP_03440156.1| hypothetical protein HP9810_904g10 [Helicobacter pylori 98-10]
 gi|216942724|gb|EEC22283.1| hypothetical protein HP9810_904g10 [Helicobacter pylori 98-10]
          Length = 504

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 8   NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLKILEN 66

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP          +++    L K+       
Sbjct: 67  SSDLEKLGSYYEE---ELSNTTRNLEGIYYTP--------NRIVEQLFTLPKDFDTSQAI 115

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 116 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----------K 155

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 156 RIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQQFN 208


>gi|217033035|ref|ZP_03438504.1| hypothetical protein HPB128_193g2 [Helicobacter pylori B128]
 gi|298736598|ref|YP_003729124.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|216945234|gb|EEC23916.1| hypothetical protein HPB128_193g2 [Helicobacter pylori B128]
 gi|298355788|emb|CBI66660.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori B8]
          Length = 814

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L      + +    +SF D  +        +    +  K    ++       +++  +
Sbjct: 29  NLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLQILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA-----I 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIMQKDFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQRFN 229


>gi|163846419|ref|YP_001634463.1| hypothetical protein Caur_0841 [Chloroflexus aurantiacus J-10-fl]
 gi|222524188|ref|YP_002568659.1| hypothetical protein Chy400_0909 [Chloroflexus sp. Y-400-fl]
 gi|163667708|gb|ABY34074.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448067|gb|ACM52333.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 1503

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 43/178 (24%)

Query: 146 HPDTVPDRVMSNIYEHLIRR------------FGSEVS---EGAEDFMTPRDVVHLATAL 190
           +   +    + ++YE L+              F        +    + TP  +VH     
Sbjct: 390 NYAALDTEELGSVYESLLDYHPLIGKDCETWSFSLSSGSERKTTGSYYTPPQLVHELVES 449

Query: 191 LLDPDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240
            L P      ++               + DP CG+G FL  A  ++    +  +      
Sbjct: 450 ALQPVLEARLKAARTTDAKIAALLRLKVLDPACGSGHFLLAAARYLGRELARLRHSESEP 509

Query: 241 ---------------VPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKNIQQGST 281
                            +G +  P    +    + I    + + P   L   I+ G +
Sbjct: 510 SPDAVRQSVREVIAHCIYGVDKNPLAVELARVALWIESHDV-ARPLTFLDHRIKCGDS 566


>gi|157150951|ref|YP_001451183.1| hypothetical protein SGO_1917 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075745|gb|ABV10428.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 317

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 44/259 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ ++ +        A    TP  +  L   ++        +       TL +   GT
Sbjct: 68  RAYQFILMKAAQTEPLQANHQFTPDAIGFLLIFII-------DQLMVASDITLLEMGSGT 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +N              +   G E++     +  +                 + 
Sbjct: 121 GNLAETILN---------NSQKEIDYLGLEIDDLLIDLSAS--------IAEVMGSKAHF 163

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG  +   +         +S+ P G               +    R+       ++ + 
Sbjct: 164 AQGDAVRPQVLKES--DLIISDLPVG-----------YYPDDQIASRYQVASQ--TEHTY 208

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+      G A  +  +  L + ++      ++ WL +N  + A++ALP  
Sbjct: 209 AHHLLMEQALKYLK-ADGYAIFLAPNHLLTSPQSD----LLKSWLKDNASLVAMIALPEK 263

Query: 397 LFFRTNIATYLWILSNRKT 415
           LF   + A  +++L  +K 
Sbjct: 264 LFASVSQAKTVFVLQKQKN 282


>gi|15645293|ref|NP_207463.1| hypothetical protein HP0669 [Helicobacter pylori 26695]
 gi|2313798|gb|AAD07737.1| predicted coding region HP0669 [Helicobacter pylori 26695]
          Length = 933

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 60/484 (12%), Positives = 127/484 (26%), Gaps = 71/484 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 179 ELIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTG F+   ++      S   +           ++   ++ + +  +       D  
Sbjct: 239 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDGS 298

Query: 270 RDLSKNIQQGSTLS-----------------------KDLFTGKRFHYCLSNPPF--GKK 304
            +  KNI    +L                        KD    +     + NPP+  G K
Sbjct: 299 LNNFKNIALTDSLDYLEEKTNKGVLPLYEDLKENKGIKDTLANQNIRVIIGNPPYSAGAK 358

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKIS----DGSMLFLMHLANKLELPPNGGGRAAIVL 360
            + D +      K  +L     G    S      +   L+             G    V+
Sbjct: 359 SQNDNNQNLSHPKLEKLVYEKYGKNSTSRSVGKTTRDTLIQSIRMASDVVKDRGVIGFVV 418

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIAT 405
           +   + +  A       R+ + +      ++ L  +              +F   +    
Sbjct: 419 NGGFIDSKSADG----FRKCVAKEFSHLYVLNLRGNQRTSGEVSKKEGGKIFDSGSRATV 474

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ---RRQIL----DIYVS 458
            +      K+             + +     +        +       +I       +++
Sbjct: 475 AIIFFVKDKSTP--DNTIFYYEVEDYLKREAKLNWLANFENLDFVPFEKITPNDKGDWIN 532

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR-KLSP--LHQSFW 515
           + N  F +++  +            L+   + D   L  +     W    SP  L QS  
Sbjct: 533 QRNDAFEKLIPLKRDKT--------LQNDSVFDINSLGVVSGRDPWVYNFSPNILTQSVQ 584

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
             I                  K+  +S +A  L  + +   I          D   + + 
Sbjct: 585 KCIDTYNADLKRFNARFREAFKQRAQSVKAGDLYKQLNDKEITTDKTKIAWTDGLKNKLI 644

Query: 576 DVNG 579
               
Sbjct: 645 KNKS 648


>gi|242347983|ref|YP_002995544.1| hypothetical protein pRA1_0046 [Aeromonas hydrophila]
 gi|242348119|ref|YP_002995679.1| hypothetical protein pRAx_0023 [Escherichia coli]
 gi|224831708|gb|ACN66840.1| conserved hypothetical protein [Escherichia coli]
 gi|224831802|gb|ACN66933.1| conserved hypothetical protein [Aeromonas hydrophila]
          Length = 211

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                 +G   F TP ++  L + ++                  Y+P CG+G    +A++
Sbjct: 84  MSGFHKKGTNYFPTPPEIGRLMSLII----------GSQSSANFYEPCCGSG---INAIH 130

Query: 226 HVADCGSHHKIP--PILVPHGQELEPETHAVCVAGMLIRRLES 266
            + +   +H          + ++++P     C    L    ES
Sbjct: 131 WMENLIENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFES 172


>gi|300115419|ref|YP_003761994.1| ribosomal protein L3-specific protein-(glutamine-N5)
           methyltransferase [Nitrosococcus watsonii C-113]
 gi|299541356|gb|ADJ29673.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Nitrosococcus watsonii C-113]
          Length = 303

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 25/153 (16%)

Query: 166 FGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F        E  + PR  +  L               +   + TL D   G+G       
Sbjct: 100 FAGLSFYVDERVLIPRSPLAELIAQRFAPFV------TLESVHTLLDLCTGSGCIAIATA 153

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           +   +                ++  E  AV    +    LE+             S+   
Sbjct: 154 HAFPEA----------QVDATDISEEALAVARMNIERHGLEAQVHAF--------SSSLF 195

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               G+R+   +SNPP+  + E    A E  H+
Sbjct: 196 QKLGGRRYDLIVSNPPYVGQAELAALAREYHHE 228


>gi|118601922|ref|YP_908622.1| hypothetical protein P91278ORF_024 [Photobacterium damselae subsp.
           piscicida]
 gi|118614660|ref|YP_908443.1| hypothetical protein P99018ORF_032 [Photobacterium damselae subsp.
           piscicida]
 gi|229516143|ref|ZP_04405592.1| hypothetical protein VCC_000158 [Vibrio cholerae RC9]
 gi|118596751|dbj|BAF38055.1| hypothetical protein P99018ORF_032 [Photobacterium damselae subsp.
           piscicida]
 gi|118596931|dbj|BAF38234.1| hypothetical protein P91278ORF_024 [Photobacterium damselae subsp.
           piscicida]
 gi|229346793|gb|EEO11762.1| hypothetical protein VCC_000158 [Vibrio cholerae RC9]
          Length = 222

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                 +G   F TP ++  L + ++                  Y+P CG+G    +A++
Sbjct: 95  MSGFHKKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIH 141

Query: 226 HVADCGSHHKIP--PILVPHGQELEPETHAVCVAGMLIRRLES 266
            + +   +H          + ++++P     C    L    ES
Sbjct: 142 WMENLIENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFES 183


>gi|15896139|ref|NP_349488.1| S-adenosylmethionine-dependent methyltransferase, HEMK ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|15025933|gb|AAK80828.1|AE007786_1 S-adenosylmethionine-dependent methyltransferase, HEMK ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325510293|gb|ADZ21929.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 285

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 27/162 (16%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F  I +    +P R ++   E +   F  E        + PR    +    +L+  +   
Sbjct: 58  FDYINMRKKKMPIRYITEKCEFMGLDFHVEKG-----VLIPRPDTEILVEAVLEYIELNN 112

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
            +       + D   G+G        +  D                ++ P+   V     
Sbjct: 113 YK------KVCDVCTGSGAIGLSIAKYAKDVE----------VLCSDISPDAIRVSKINR 156

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
               LE   +       + G  L K +  G++F   +SNPP+
Sbjct: 157 QGLNLEDRVKI------ENGDLLEKPIERGEKFDIVVSNPPY 192


>gi|41529824|ref|NP_956510.2| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Danio rerio]
 gi|33329805|gb|AAQ10288.1| putative RNA methylase [Danio rerio]
          Length = 466

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 85/340 (25%), Gaps = 32/340 (9%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
            T    +EK   +  + +  +    V   +    S + L   G T T     S +   S+
Sbjct: 40  ETPETFKEKSPFWHLNGLSEDDIRSVMSRTVCGKSAFELWGHGKT-TEELRRSLLEYPSE 98

Query: 110 NAKAIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTV------PDRVMSN----- 157
           N     +        +    K        K    ++  P         P+ +        
Sbjct: 99  NMAPYLQQNSTYKINVYTFNKTLEFKDRIKKIDALDFLPFEGTVNLKDPEHIFCLLEDYG 158

Query: 158 ----------IYEHLIRRFGSEVSEGAEDF-MTPRDVVHLATALLLDPDDALFKESPGMI 206
                     +Y +  R       E    + +  R  +   +                  
Sbjct: 159 TDPNDIPEEPVYVYFGRWIADGQRELIRSYSVKKRHFIGNTSMDAGLSFIMANHAKVKPN 218

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  GTG  L    +  A           +   G+              +   L  
Sbjct: 219 DLVYDPFVGTGSLLVACSHFGAYVCGTDIDYNTIHGIGKASRKNQKWRGPDENIRANLRQ 278

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               +L  ++              +F   +++PP+G +    +    K+         G 
Sbjct: 279 YGAENLYVDVMVSDASKLVWRRNAQFDAIITDPPYGIRESTRRTGSHKDIIKPPEDFSGE 338

Query: 327 GLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLS 361
               +S           L++ A    +    GGR    L 
Sbjct: 339 SHVPVSMAYHLSDIFADLLNFAAHHLVL---GGRLVYWLP 375


>gi|15896770|ref|NP_350119.1| site-specific modification DNA-methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|15026627|gb|AAK81459.1|AE007849_13 Site-specific modification DNA-methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|325510941|gb|ADZ22577.1| Site-specific modification DNA-methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 571

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 110/329 (33%), Gaps = 44/329 (13%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+R+  +E       F TP+D+       ++             I  + +P+CG G FL 
Sbjct: 2   LLRKDATEERLTGRYF-TPKDLASYIIDWVI---------QDNNINKILEPSCGNGVFLE 51

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKN 275
                  + G +     I      E   +                +R         +   
Sbjct: 52  CLGERRLEDGRNITAIEIDEDVSFEASMQIDNSLRFNNCYDYQRALRNDGDIVNNGIVII 111

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                 + +    G+RF   + NPP+ +     +   E++ K        P   K+ +  
Sbjct: 112 NDDFYKVYEQELQGQRFQAIVGNPPYIRYQYLSEQQREEQSKILIRNNMRPN--KLINAW 169

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F++  A  L    +G G+  +V+ +  L    A     ++RR+++       IV    
Sbjct: 170 VSFVVACAEIL----DGNGKMGLVIPAELLQVAYA----EDLRRFIMRTFQRITIVTFRE 221

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDL-------------WTSIRNEGKK-- 440
            +F        L ++       R  +++++   D+             +  +     K  
Sbjct: 222 LVFPNVQQEVVLLLVEKEILHTREHQLRIVEYQDINELTESNDLDEYPFNDVEINESKWT 281

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +  ++ +  R I +I   REN KF R  D
Sbjct: 282 KYFLSANDIRLINNI---RENDKFVRFSD 307


>gi|18311803|ref|NP_558470.1| hypothetical protein PAE0242 [Pyrobaculum aerophilum str. IM2]
 gi|18159211|gb|AAL62652.1| hypothetical protein PAE0242 [Pyrobaculum aerophilum str. IM2]
          Length = 1239

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            +  +L P+   D ++  +Y++L+     E+     ++ TP         L+LD      
Sbjct: 343 VAAPQLEPEFARD-LLKRLYQNLVP---GEIRHKLGEYYTP----DWLAELVLDEVGLSL 394

Query: 200 KESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------G 244
           K    M            + DP CG+G FL   ++ +      H +   L+ +      G
Sbjct: 395 KNLLKMGEEDPLKPLKIRVLDPACGSGTFLMLYISRLRRYAEEHYMTDQLLSYVLENVVG 454

Query: 245 QELEPETHAVCVAGMLI 261
            +L P          L+
Sbjct: 455 YDLNPLAVLTARTNYLL 471


>gi|284005657|ref|YP_003391477.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283820841|gb|ADB42678.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 1674

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 29/137 (21%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   + N PFG     D+   +                     +     +   K  
Sbjct: 231 PNGSFDLVIGNVPFGAYSVYDRQNSDI-------------------SAYPIHNYFIGKSA 271

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE--NDLIEAIVALPTDLF---FRTN 402
                GG  A++ SS  L  G A     E R+WL       +   + LP+  F     T+
Sbjct: 272 RLVKPGGLLALITSSGTLDQGGA-----EFRQWLTRQAETELVGAIRLPSCAFESHSGTS 326

Query: 403 IATYLWILSNRKTEERR 419
           + T +  L  R    R+
Sbjct: 327 VTTDVLFLQRRDGVNRQ 343


>gi|262118169|ref|YP_003275939.1| helicase domain protein [Gordonia bronchialis DSM 43247]
 gi|262088079|gb|ACY24046.1| helicase domain protein [Gordonia bronchialis DSM 43247]
          Length = 1956

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 72/245 (29%), Gaps = 57/245 (23%)

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
               ++      + +P CG+G F+  A             P      G E +P +  V  
Sbjct: 214 DALVDAGFSGGRVLEPGCGSGNFIGLA-------------PDTASMVGVENDPVSARVA- 259

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                  L  D +       +              F   + N PFG+    D     + H
Sbjct: 260 -----HLLYPDAQVRNEGFERT-------RVPEGSFTAAIGNVPFGRFTVPDPVHNSRNH 307

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                                   H   K       GG AA++ SS  L      + + +
Sbjct: 308 S--------------------IHNHFIIKTLHLTAPGGYAALITSSWTL-----DAADEK 342

Query: 377 IRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE---RRGKVQLINATDL 430
            RR + E   + + + LP+  F     T++ T + +   R   E       V  I+A  +
Sbjct: 343 ARREMHELGELVSAIRLPSRAFQRVAATDVVTDVLVFRRRDNAETVPHPETVDWIHAGPM 402

Query: 431 WTSIR 435
               R
Sbjct: 403 RVRDR 407


>gi|160887401|ref|ZP_02068404.1| hypothetical protein BACOVA_05420 [Bacteroides ovatus ATCC 8483]
 gi|156107812|gb|EDO09557.1| hypothetical protein BACOVA_05420 [Bacteroides ovatus ATCC 8483]
          Length = 1125

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 27/145 (18%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           +AI  +  F  +   L      Y      +  E     +   ++  ++E+L+  +  E  
Sbjct: 383 RAIIPNNLFFDSEKGLISILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETK 442

Query: 172 EGA----EDFMTPRDVVHLATAL--------------LLDPDDALFKESPGMIRTL---- 209
           E A      F TPR++V+                   L +PD  L +E P   + +    
Sbjct: 443 ETARNQSGSFYTPREIVNYMVDESLITYLGDTQFVRSLFNPDFTLDREKPEEYQRVAKRL 502

Query: 210 -----YDPTCGTGGFLTDAMNHVAD 229
                 DP CG+G F    +N + D
Sbjct: 503 KAIKILDPACGSGAFPMGLLNRMID 527


>gi|134044465|ref|YP_001101751.1| hypothetical protein YR71pYR1_0057 [Yersinia ruckeri]
 gi|133904828|gb|ABO40845.1| hypothetical protein YR71pYR1_0057 [Yersinia ruckeri]
          Length = 211

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                 +G   F TP ++  L + ++                  Y+P CG+G    +A++
Sbjct: 84  MSGFHKKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIH 130

Query: 226 HVADCGSHHKIP--PILVPHGQELEPETHAVCVAGMLIRRLES 266
            + +   +H          + ++++P     C    L    ES
Sbjct: 131 WMENLIENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFES 172


>gi|320190582|gb|EFW65232.1| hypothetical protein ECoD_01996 [Escherichia coli O157:H7 str.
           EC1212]
          Length = 1644

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|303254948|ref|ZP_07341029.1| hypothetical protein CGSSpBS455_05701 [Streptococcus pneumoniae
           BS455]
 gi|303260534|ref|ZP_07346501.1| hypothetical protein CGSSp9vBS293_09130 [Streptococcus pneumoniae
           SP-BS293]
 gi|303262891|ref|ZP_07348827.1| hypothetical protein CGSSp14BS292_07034 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265202|ref|ZP_07351114.1| hypothetical protein CGSSpBS397_09165 [Streptococcus pneumoniae
           BS397]
 gi|303266563|ref|ZP_07352449.1| hypothetical protein CGSSpBS457_05709 [Streptococcus pneumoniae
           BS457]
 gi|303268653|ref|ZP_07354444.1| hypothetical protein CGSSpBS458_00807 [Streptococcus pneumoniae
           BS458]
 gi|301802722|emb|CBW35491.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302598084|gb|EFL65149.1| hypothetical protein CGSSpBS455_05701 [Streptococcus pneumoniae
           BS455]
 gi|302635974|gb|EFL66473.1| hypothetical protein CGSSp14BS292_07034 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638332|gb|EFL68800.1| hypothetical protein CGSSpBS293_09130 [Streptococcus pneumoniae
           SP-BS293]
 gi|302641818|gb|EFL72174.1| hypothetical protein CGSSpBS458_00807 [Streptococcus pneumoniae
           BS458]
 gi|302643900|gb|EFL74161.1| hypothetical protein CGSSpBS457_05709 [Streptococcus pneumoniae
           BS457]
 gi|302645283|gb|EFL75518.1| hypothetical protein CGSSpBS397_09165 [Streptococcus pneumoniae
           BS397]
          Length = 317

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 80/255 (31%), Gaps = 44/255 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +  L   ++    + LF E    I  +       G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIALLLVFIV----EELFTEEEITILEMGSGMGILGA 125

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +++              +   G E++     +  +   +  L++           Q
Sbjct: 126 TFLTSLD------------KKVDYLGMEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DAV   H+                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAVASRHQVASSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L   ++      ++ WL E   + A+++LP +LF
Sbjct: 214 MEQGFKYLK----SDGYAIFLAPSDLLTGPQSD----LLKVWLKEEASLVAMISLPENLF 265

Query: 399 FRTNIATYLWILSNR 413
                +  ++IL  +
Sbjct: 266 ANAKQSKTIFILQKK 280


>gi|227510788|ref|ZP_03940837.1| methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227189747|gb|EEI69814.1| methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 206

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 17/111 (15%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           EHLI+   ++  +   +  TP+ VV L           L+     +  T  +P  G G F
Sbjct: 4   EHLIK--SNKRVKEHGEVFTPKRVVKLMLN-----QHELYGALHSLTATFLEPAAGEGAF 56

Query: 220 LTDAMNHVADCGSH----------HKIPPILVPHGQELEPETHAVCVAGML 260
           LT+ ++   +  +H          + +  +   +G EL  +   + V  M 
Sbjct: 57  LTEILSRKLELANHMSSDIKGFEQNALIALTSLYGIELLVDNTELLVMHMY 107


>gi|84388965|ref|ZP_00991173.1| hypothetical protein V12B01_09796 [Vibrio splendidus 12B01]
 gi|84377029|gb|EAP93901.1| hypothetical protein V12B01_09796 [Vibrio splendidus 12B01]
          Length = 892

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 40/289 (13%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L++   +  R+ L  ++  F      +FE  +    + +  +  L+    +++S I    
Sbjct: 226 LNSPNGSELRSRLPQHLTDFPYVNGGLFEVDEPIPELGKKGRRILIECGLEDWSAIN--- 282

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 +  ++++ +I     + +   + + +  +++ +   L LDP  A  ++    + 
Sbjct: 283 ----PDIFGSMFQAVID--VDQRARLGQHYTSYSNIMKVIQPLFLDPLRAELEKQRNSVN 336

Query: 208 ------------TLYDPTCGTGGFLTDAMNHVA-------------DCGSHHKIPPILVP 242
                        ++DP CG+G FL  A   +              D G       +   
Sbjct: 337 GLKRLLVRLGDIKVFDPACGSGNFLIIAYKELRLLEIEVIQALMKIDQGFFISNIHLDQF 396

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +G E++     +    + +          ++K  ++    ++     K     +S     
Sbjct: 397 YGIEIDDFACEIARLSLWL------AEHQINKQWEEHIGPAEPALPLKATGKIVSGNSLH 450

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             W         E           G    S+     + H+ ++     N
Sbjct: 451 LDWSVVCPKKVDEEVYVIGNPPFLGTNTRSEAQRAEMKHVLSEFRSLGN 499


>gi|282932409|ref|ZP_06337835.1| phage protein [Lactobacillus jensenii 208-1]
 gi|281303471|gb|EFA95647.1| phage protein [Lactobacillus jensenii 208-1]
          Length = 271

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +   F + + ++           K    ++L    V        +E  +        +  
Sbjct: 15  QHIQFENYLRKIVFDPEKRNDFFKQL--LKLDAQCVVQDTFKQYFEEYV-----AERKAN 67

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKES------PGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +   TP +V  L + ++    +A FK             T  D T GTG  L       A
Sbjct: 68  QQDYTPDEVSKLLSIIVNTKYNADFKNDIEKRYFHKKGYTAADITAGTGSLLIQ--KWWA 125

Query: 229 DCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  +      +P        EL        +  + +R + +    
Sbjct: 126 DMTAELPWTYVPHRYFYFASELADNVIPYLLCNLALRGMNAIVVH 170


>gi|282897536|ref|ZP_06305537.1| hypothetical protein CRD_00702 [Raphidiopsis brookii D9]
 gi|281197631|gb|EFA72526.1| hypothetical protein CRD_00702 [Raphidiopsis brookii D9]
          Length = 701

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 28/198 (14%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFG 167
           NA      +  +  I ++    L  +   +   S ++ HP    D+  S+    L+    
Sbjct: 328 NALRCLSLYYENGQIRKVNYGALDVEELGSVYESLLDFHPQITLDKYNSSF--KLVVDIS 385

Query: 168 SEVSEGAEDFMTP---RDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFL 220
           SE       +  P   ++++  A   ++    A   E           + D  CG+G FL
Sbjct: 386 SERKTTGSYYTPPSLVQELIKTALEPVIKEKMAQENEKTQERAILSIKVVDAACGSGHFL 445

Query: 221 TDAMNHVADCGSHHKIPPIL----------------VPHGQELEPETHAVCVAGMLIRRL 264
             A   +    +  +   I                   +G ++ P    +C  G+ I   
Sbjct: 446 LAAARRLGKELAKIRTGDIQPGASSLREAIREVIQNCIYGVDINPLAVDLCKVGLWIEGF 505

Query: 265 -ESDPRRDLSKNIQQGST 281
               P   L   I+ G++
Sbjct: 506 CSGKPLNFLDHRIKCGNS 523


>gi|317010727|gb|ADU84474.1| type II adenine specific methyltransferase [Helicobacter pylori
           SouthAfrica7]
          Length = 545

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 35/233 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L        +    +SF D           +    +  K    ++       +E+  +
Sbjct: 29  NLLEKLEIDRKIYVKTSSFLDFCHNHLGKNKLNKYANKSLKGAHNHQEL-ILKYLEILEN 87

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE       +        + TP  +V     L   P D    ++      
Sbjct: 88  SSDLENLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTSQA-----A 136

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             DP  G+G F+  A+              +   +G + +    A+              
Sbjct: 137 FCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVALTK-----------K 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           R     ++   + + KD  + K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 177 RIKERYHLDCPNIVQKDFLSLKHTPQFDCIFTNPPWGKKYHQNQKENFKQRFN 229


>gi|291285687|ref|YP_003502505.1| hypothetical protein G2583_5106 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290765560|gb|ADD59521.1| hypothetical protein G2583_5106 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 1644

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|170078909|ref|YP_001735547.1| DNA modification methyltransferase [Synechococcus sp. PCC 7002]
 gi|169886578|gb|ACB00292.1| DNA modification methyltransferase [Synechococcus sp. PCC 7002]
          Length = 914

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 71/261 (27%), Gaps = 53/261 (20%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA-----------TALLLDP 194
           +   +   +  NI+E  I     E       + + +D+  +                   
Sbjct: 292 NWANIRPSIFGNIFESAID--ADERHARGIHYTSEKDIRQIVRPTIADYWEGKIDEATTY 349

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------------------CGSH 233
           +D    +       + DP CG+G FL  A   +                           
Sbjct: 350 EDLEKLKQELREYRVLDPACGSGNFLYVAYQELKRLERVLLNKIYERRKRFQGEVLQQEE 409

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD----------PRRDLSKNIQQGSTLS 283
             I   L   G +  P    +    M+I R  +           P   L +NI     L 
Sbjct: 410 IGIVTPLQFFGMDTNPFAVQLARVTMMIARKIAIDKFGLTEPALPLDSLDQNIVCQDALF 469

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +    + NPPF     + +  +  ++      +F     K+            
Sbjct: 470 NDWP---KADAIIGNPPF-LGGSRVRLELGDKYVERIFEKFSDVKDKV---DFCVYWFRL 522

Query: 344 NKLELPPNGGGRAAIVLSSSP 364
                  N  GRA +V ++S 
Sbjct: 523 AH--ENLNKTGRAGLVGTNSI 541


>gi|15804879|ref|NP_290920.1| hypothetical protein Z5900 [Escherichia coli O157:H7 EDL933]
 gi|12519308|gb|AAG59486.1|AE005661_2 hypothetical protein Z5900 [Escherichia coli O157:H7 str. EDL933]
          Length = 1644

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|15834516|ref|NP_313289.1| hypothetical protein ECs5262 [Escherichia coli O157:H7 str. Sakai]
 gi|168749543|ref|ZP_02774565.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754867|ref|ZP_02779874.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760542|ref|ZP_02785549.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766576|ref|ZP_02791583.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773994|ref|ZP_02799001.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|168782812|ref|ZP_02807819.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784938|ref|ZP_02809945.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|168797867|ref|ZP_02822874.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|195937310|ref|ZP_03082692.1| hypothetical protein EscherichcoliO157_12800 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806135|ref|ZP_03248472.1| hypothetical protein ECH7EC4206_A4022 [Escherichia coli O157:H7
           str. EC4206]
 gi|208814198|ref|ZP_03255527.1| hypothetical protein ECH7EC4045_A0408 [Escherichia coli O157:H7
           str. EC4045]
 gi|208818858|ref|ZP_03259178.1| hypothetical protein ECH74042_A0964 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400195|ref|YP_002273829.1| hypothetical protein ECH74115_5809 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324714|ref|ZP_03440798.1| hypothetical protein ESCCO14588_1198 [Escherichia coli O157:H7 str.
           TW14588]
 gi|254796305|ref|YP_003081142.1| hypothetical protein ECSP_5387 [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226662|ref|ZP_05940943.1| hypothetical protein EscherichiacoliO157_19027 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256951|ref|ZP_05949484.1| hypothetical protein EscherichiacoliO157EcO_14148 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|13364740|dbj|BAB38685.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770334|gb|EDU34178.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016129|gb|EDU54251.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|188999754|gb|EDU68740.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357821|gb|EDU76240.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364322|gb|EDU82741.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369019|gb|EDU87435.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374967|gb|EDU93383.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189379583|gb|EDU97999.1| type II restriction enzyme, methylase subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208725936|gb|EDZ75537.1| hypothetical protein ECH7EC4206_A4022 [Escherichia coli O157:H7
           str. EC4206]
 gi|208735475|gb|EDZ84162.1| hypothetical protein ECH7EC4045_A0408 [Escherichia coli O157:H7
           str. EC4045]
 gi|208738981|gb|EDZ86663.1| hypothetical protein ECH74042_A0964 [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161595|gb|ACI39028.1| hypothetical protein ECH74115_5809 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320935|gb|EEC29359.1| hypothetical protein ESCCO14588_1198 [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595705|gb|ACT75066.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|320639031|gb|EFX08677.1| hypothetical protein ECO5101_17186 [Escherichia coli O157:H7 str.
           G5101]
 gi|320644401|gb|EFX13466.1| hypothetical protein ECO9389_14613 [Escherichia coli O157:H- str.
           493-89]
 gi|320649719|gb|EFX18243.1| hypothetical protein ECO2687_22209 [Escherichia coli O157:H- str. H
           2687]
 gi|320654767|gb|EFX22736.1| hypothetical protein ECO7815_09028 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660620|gb|EFX28081.1| hypothetical protein ECO5905_14973 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665548|gb|EFX32594.1| hypothetical protein ECOSU61_14646 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326345384|gb|EGD69127.1| hypothetical protein ECF_01272 [Escherichia coli O157:H7 str. 1125]
 gi|326346761|gb|EGD70495.1| hypothetical protein ECoA_01144 [Escherichia coli O157:H7 str.
           1044]
          Length = 1644

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|329568743|gb|EGG50543.1| N-6 DNA Methylase [Enterococcus faecalis TX1467]
          Length = 335

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 118/365 (32%), Gaps = 70/365 (19%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+ V  R +S + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPEDV--RRLSQL- 83

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ +   +    A   +TP  +  L   L+   +    K  P     + DP  G G  
Sbjct: 84  --LLLKGTRKEQLQANHQLTPDGIGFLFVYLV---EQLTNKSEPL---KILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                  + +    
Sbjct: 136 LLTVLLNLETAG------YKVSGYGVDIDETLLAVSSVN-------------NAWSQANI 176

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G             + N E  +      +    S 
Sbjct: 177 QLFHQDGLQDLLLDPVDLALSDLPVGY------------YPNDERAKGFAAAAEEGH-SY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   ++      G    ++ ++ L   ++       + WL +N  ++ ++ LP +
Sbjct: 224 AHHLLMEQAMKYVKP-AGFGLFLIPTNILETEQSEF----FKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           LF    +  + L + +     E+  +V L                 ++ +     ++ + 
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLL----------------AKLASLKDINKVTEF 322

Query: 456 YVSRE 460
           +   E
Sbjct: 323 FKQFE 327


>gi|315639417|ref|ZP_07894576.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480480|gb|EFU71125.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 2533

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 117/381 (30%), Gaps = 67/381 (17%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L  A    +S  +  + A      D    V+ + +  + T    L  L   N +  +  +
Sbjct: 561 LNEAKHHLQSLEKNTHQALNEDFKDFLEEVEPSEFKIF-TQHQFLKKLDGENYKGKV-DF 618

Query: 104 IASFSDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             +F +  +A +E    +  I    RL       ++   FSG         D       +
Sbjct: 619 KLTFKERIRANYEALKLTQNIFHQNRLVATAKEQEVLAKFSGYGGLKALFYDDKYEKEKD 678

Query: 161 HLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            L++      F          F TP  +V+     LL         S      + +P+CG
Sbjct: 679 ELLKLVGVKYFKELRDSSVSAFYTPSFIVNAMYERLL-----KLGLSQNEKVKVLEPSCG 733

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G F++ A             P        E +  T  +      +              
Sbjct: 734 VGIFMSLA-------------PENFEFEAVEKDSLTATIAK---FLH-----------PK 766

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +   +   +++   K F   + NPP+ K+   D  +  K HK      F      I    
Sbjct: 767 VVIYNKGLEEVKFNKEFDLVIGNPPYAKESIYDVSS--KGHKENVHNYFA-----IKCAE 819

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           +L                G  + V+SS  L +  A       R  L +   +     L +
Sbjct: 820 LL-------------KENGLFSFVISSYFLDSQSAKH-----REILNDMGTLVDSYRLSS 861

Query: 396 DLFFRTNIATYLWILSNRKTE 416
           + F+ T + + L   + RK +
Sbjct: 862 EAFYNTEVISDLIFYAKRKFK 882


>gi|269977104|ref|ZP_06184078.1| putative methyltransferase, HsdM related [Mobiluncus mulieris 28-1]
 gi|269934935|gb|EEZ91495.1| putative methyltransferase, HsdM related [Mobiluncus mulieris 28-1]
          Length = 621

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 53/186 (28%), Gaps = 17/186 (9%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  YE L+    S     A  F TP D      A          +       T  DP 
Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMAA----------QSRDFPAGTWLDPC 205

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRRDL 272
           CG G          +       +   LV    +      AV + G   +   + +    L
Sbjct: 206 CGVGN--LAWHLVASQSNPARFVCENLVLIDVDETALRSAVALLGADFLSGGDHEGLAQL 263

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                    LSK       F   + NPP+ +   K+   +E          F   + K S
Sbjct: 264 WAKASNRDFLSKSGLAPHEF--VIVNPPYAR--AKESPGLECAASREYFAYFLEKIAKTS 319

Query: 333 DGSMLF 338
            G +  
Sbjct: 320 RGFIAV 325


>gi|197294453|ref|YP_001798994.1| Putative N6 adenine-specific DNA methyltransferase, probably
           truncated [Candidatus Phytoplasma australiense]
 gi|171853780|emb|CAM11712.1| Putative N6 adenine-specific DNA methyltransferase, probably
           truncated [Candidatus Phytoplasma australiense]
          Length = 212

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 70/259 (27%), Gaps = 60/259 (23%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  V      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQR---------DLILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                                  G ++E  T    +    +                   
Sbjct: 53  L------------PWQQKGFDVLGVDIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPKISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER 418
                + + I +    +  
Sbjct: 183 NVVFHSEILIFNVNHLKPH 201


>gi|291566159|dbj|BAI88431.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 229

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 37/119 (31%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + R      + +  + TP+ +        L    A       +  T+ +P  G+  F  
Sbjct: 36  FLFRLAGRDRQKSASYYTPQTLTKCLVKYALQELLADKTADDILKLTVCEPAMGSAAFFN 95

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +A+  +AD     K   +      E            +  R +    +  ++  + + S
Sbjct: 96  EAITQLADAYLQRKEEELNQRIPHENITLEKQKVKMLLADRNVFGIDKNPIAMELAEAS 154


>gi|291533954|emb|CBL07067.1| N-6 DNA Methylase [Megamonas hypermegale ART12/1]
          Length = 59

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 8/48 (16%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
              ++  ++ D             TLS      K F   L+NPPFG K
Sbjct: 1   MNAMLHDIDGDIML--------ADTLSNQGKALKDFDVVLANPPFGTK 40


>gi|255527088|ref|ZP_05393977.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296188152|ref|ZP_06856544.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
 gi|255509240|gb|EET85591.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296047278|gb|EFG86720.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
          Length = 542

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 94/320 (29%), Gaps = 71/320 (22%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D  +   Y+ L+ +      +    F TP  ++        D  + +          + 
Sbjct: 3   KDVKLEKSYDVLMEK---NRKKSYGCFYTPDYIIDYIIKNTFDNLNVI----KTPFVKIL 55

Query: 211 DPTCGTGGFLTDAMNHVAD--------------------------CGSHHKIPPILVP-- 242
           DP+CG+G FL   +  + +                           G  +     ++   
Sbjct: 56  DPSCGSGYFLIKVIKFLVEEFTKNIDALSKKYEEEEYIINGDCKLKGKDYWKVENIILHI 115

Query: 243 -----HGQELEPETHAVCVAG----------MLIRRLESDPRRDLSKNIQQGSTLSKDL- 286
                +G +++     +C             +++  +  D      K     +  S  L 
Sbjct: 116 VNHCVYGADIDYNAVEICKQNIVSTCENKKGLILNVVCCDSLIKWEKAYINKTEKSNYLC 175

Query: 287 -FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F  K++ Y + NPP+     K+K   + E  N  +  +   +   +            +
Sbjct: 176 DFWSKKYDYIVGNPPWVSLNRKNKQCKDIELINYYINEYEGNIYLPNLYEY-----FLKR 230

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI---VALPTDLFFRTN 402
                   GR   VL                 R+ ++ N  I+ +   +  P       N
Sbjct: 231 SLQVLKMHGRIGFVLPD----RLAKNLQYKNFRKKIILNYSIKNLAFEITFP-------N 279

Query: 403 IATYLWILSNRKTEERRGKV 422
           I T + I    ++  +  ++
Sbjct: 280 INTDVMIFILERSYSKDNEI 299


>gi|153864485|ref|ZP_01997373.1| DNA methyltransferase [Beggiatoa sp. SS]
 gi|152146020|gb|EDN72627.1| DNA methyltransferase [Beggiatoa sp. SS]
          Length = 479

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 86/311 (27%), Gaps = 62/311 (19%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +    T     + + YE  ++ +  ++ E    + TP  VV      +       FK   
Sbjct: 46  DFGKRTRQTDPVVHFYETFLKHYDPKMREMRGVYYTPEPVVSYIVRSVDGLLKQRFKLRD 105

Query: 204 GMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHG 244
           G+              + DP  GTG FL    NH+       K               HG
Sbjct: 106 GLADNSRLESGLHKVQILDPAVGTGTFLYAVFNHIFAQFMKTKGMWSAYVAEHLLPRVHG 165

Query: 245 QELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSK------------------ 284
            EL    + V     G+ ++ +  +   D    I   ++L                    
Sbjct: 166 FELLMAPYTVAHIKLGLQLQEMGYEFESDERLRIFLTNSLENAHETGSTPTLPFAEWLVN 225

Query: 285 ------DLFTGKRFHYCLSNPPFGKKWEKDKD-------AVEKEHKNGELGRFGPGLPKI 331
                 ++         + NPP+        D        ++          F      +
Sbjct: 226 EGRAASEVKQDSPVMVIIGNPPYSGHSLNKGDWITHLLRGIDNNLDAEIANYFEVDGKPL 285

Query: 332 SDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           S+ +  +L     K        +   G G    + +   L           +R+ L+++ 
Sbjct: 286 SERNPKWLQDDYVKFIRFAQWRIESTGYGILGFITNHGYL----DNPTFRGMRQALMQDF 341

Query: 386 LIEAIVALPTD 396
               ++ L  +
Sbjct: 342 DEIYVLDLHGN 352


>gi|145637545|ref|ZP_01793202.1| HemK [Haemophilus influenzae PittHH]
 gi|145269231|gb|EDK09177.1| HemK [Haemophilus influenzae PittHH]
          Length = 292

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 67/221 (30%), Gaps = 32/221 (14%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR          L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTESLVEKALQIALEKLEENP-PHFHILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L     +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSNAERNQLNVQFLQSSWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+        DA ++    G++          +D     L H+        N  G   
Sbjct: 198 NPPY-------IDAQDEHLHQGDVSFEPLSALVANDAGYADLRHIIELASSYLNSNGV-- 248

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPTD 396
                  L       GE ++R   LEN    +E +     +
Sbjct: 249 ------LLLEHGWQQGE-KVRSIFLENYWEMVETVCDYGDN 282


>gi|134044860|ref|YP_001102142.1| hypothetical protein YpIP275_pIP1202_0078 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|134047269|ref|YP_001101931.1| hypothetical protein SNSL254_pSN254_0052 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|165938006|ref|ZP_02226566.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|237640241|ref|YP_002891096.1| hypothetical protein peH4H_0053 [Escherichia coli]
 gi|237809961|ref|YP_002894400.1| hypothetical protein pAR060302_0054 [Escherichia coli]
 gi|237810149|ref|YP_002894588.1| hypothetical protein pAM04528_0052 [Salmonella enterica]
 gi|258624193|ref|ZP_05719143.1| putative type I restriction-modification system methyltransferase
           subunit [Vibrio mimicus VM603]
 gi|300925691|ref|ZP_07141550.1| hypothetical protein HMPREF9548_03746 [Escherichia coli MS 182-1]
 gi|309796414|ref|ZP_07690822.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|133905188|gb|ABO41203.1| hypothetical protein SNSL254_pSN254_0052 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|133905394|gb|ABO42156.1| hypothetical protein YpIP275_pIP1202_0078 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165914029|gb|EDR32646.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|229561460|gb|ACQ77663.1| conserved hypothetical protein [Escherichia coli]
 gi|229561633|gb|ACQ77835.1| conserved hypothetical protein [Salmonella enterica]
 gi|229561816|gb|ACQ78017.1| conserved hypothetical protein [Escherichia coli]
 gi|258583624|gb|EEW08423.1| putative type I restriction-modification system methyltransferase
           subunit [Vibrio mimicus VM603]
 gi|300418192|gb|EFK01503.1| hypothetical protein HMPREF9548_03746 [Escherichia coli MS 182-1]
 gi|308119919|gb|EFO57181.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|324007651|gb|EGB76870.1| hypothetical protein HMPREF9532_02674 [Escherichia coli MS 57-2]
 gi|327536494|gb|AEA95327.1| hypothetical protein pSD853_174_61 [Salmonella enterica subsp.
           enterica serovar Dublin]
 gi|332144503|dbj|BAK19723.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 211

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                 +G   F TP ++  L + ++                  Y+P CG+G    +A++
Sbjct: 84  MSGFHKKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIH 130

Query: 226 HVADCGSHHKIP--PILVPHGQELEPETHAVCVAGMLIRRLES 266
            + +   +H          + ++++P     C    L    ES
Sbjct: 131 WMENLIENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFES 172


>gi|212695554|ref|ZP_03303682.1| hypothetical protein ANHYDRO_00071 [Anaerococcus hydrogenalis DSM
            7454]
 gi|212677432|gb|EEB37039.1| hypothetical protein ANHYDRO_00071 [Anaerococcus hydrogenalis DSM
            7454]
          Length = 1718

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 70/253 (27%), Gaps = 69/253 (27%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+          G+    
Sbjct: 840  FYTPREV--------MDGIYNTITDMGFKTGNILEPSAGVGNFI----------GNMPSE 881

Query: 237  PPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +G E +  +  +       A + I+  E                  +  F+   
Sbjct: 882  MKASKIYGVEKDSLSGRIARELYPEANIQIKGFE------------------ETNFSNNF 923

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + N PFG                     F     + +  + L   +   K      
Sbjct: 924  FDLVIGNVPFGD--------------------FKVNDREYNRNNFLIHDYFFAKSIDKVR 963

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
              G  A + SS  +        +  +R+++         + LP   F     T + + + 
Sbjct: 964  NVGIIAFITSSGTM-----DKKDESVRKYINARCEFLGAMRLPNTTFKGLAGTEVTSDII 1018

Query: 409  ILSNRKTEERRGK 421
             L  R +   R  
Sbjct: 1019 FLKKRDSVIERDD 1031


>gi|330836160|ref|YP_004410801.1| helicase A859L [Spirochaeta coccoides DSM 17374]
 gi|329748063|gb|AEC01419.1| helicase A859L [Spirochaeta coccoides DSM 17374]
          Length = 1418

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 110/368 (29%), Gaps = 68/368 (18%)

Query: 70   ESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIAS--FSDNAKAIFEDFDFSSTIAR 126
            E  ++     F  T    L   G    T  N +  I    F +      + F        
Sbjct: 856  EDDIRARLRGFARTIPSFLMAYGTPDTTLANFDENIKDVVFKEVTGITLDQFRTLRDTYE 915

Query: 127  LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                 +  +  + F    E   D   D    +I++++         +      TPR VV 
Sbjct: 916  FFDGVVFNESIQEFLHKKEQLADYFDDSHDEDIFDYI-------PPQKTNQIYTPRKVVK 968

Query: 186  LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN--------HVADCGSHHKIP 237
            L    L + +  +F +     +T  D    +G +LT+ +          + D     K  
Sbjct: 969  LMIDKLEEENPDIFTDK---DKTFADLYVKSGLYLTEIVKRLYTALAGQIPDEKQRIKHI 1025

Query: 238  PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFH 293
                 +G       + +       R        +++ +  Q   L++   TG+    +F 
Sbjct: 1026 LENQIYGFAPSEIIYNIA------RNFIFGSFANINDSHLQCRDLTEMAKTGRSLDMKFD 1079

Query: 294  YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              + NPP+        +AV     N  +      L ++       +              
Sbjct: 1080 VVVGNPPY------QDEAVGGSTSNDPIYNHFYNLAELIAPKYCLI-------------- 1119

Query: 354  GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV-----ALPTDLFFRTNIATYLW 408
                    S   F  +AG         +L ++ ++ +      AL   +F  T+I   + 
Sbjct: 1120 --------SPARFLSKAGYTPKTWNEQMLNDENLKVVYYEQKSAL---IFPNTDIKGGVV 1168

Query: 409  ILSNRKTE 416
            +L   K +
Sbjct: 1169 VLLRDKDK 1176


>gi|315606198|ref|ZP_07881225.1| type II restriction enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312086|gb|EFU60176.1| type II restriction enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 918

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 54/284 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQELEPE 250
            ++DP CG+G FL  A   +                         +  I   +G E++  
Sbjct: 352 RIFDPACGSGNFLVIAYKELRRLEHAILERLADLDPSHNTLFTDSVISIEHFYGIEIDDF 411

Query: 251 THAVCVAGMLI--RRLESDPRRDL-----------SKNIQQGSTLSKDLFTGKRFH---- 293
              V +  + I   ++  + +              +  I  G+    D  T  +      
Sbjct: 412 AVEVAILSLWIAKHQMNREFKDKFGTTIPLIPLKEAGAIHAGNATRIDWNTICKNDGSTE 471

Query: 294 -YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y + NPP+G    K   A +K+  +     +  G    S       +            
Sbjct: 472 IYLIGNPPYGG--AKKLKAAQKQDYD-----YAFGDRPYSKNLDYIALWFIKGAAYIRRT 524

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW---- 408
             + A V ++S      AG     I    LE            +      +   +     
Sbjct: 525 QAQLAFVSTNSVTQGEHAGLMFPMILEMGLEIGYAYTSFKWENNAKRNAGVTVVVVSLRN 584

Query: 409 ILSNRK---TEERRGKV-----QLINATDLWTSIRNEGKKRRII 444
           I + +K   +E  R +V      LI+A D++   R +    R +
Sbjct: 585 ITNKQKYLYSEHIRTQVTNINGYLIDADDIYIRTRKQDPLTRYL 628


>gi|229037726|ref|ZP_04189561.1| Restriction-modification system LlaBIII [Bacillus cereus AH1271]
 gi|228727580|gb|EEL78721.1| Restriction-modification system LlaBIII [Bacillus cereus AH1271]
          Length = 1571

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 74/276 (26%), Gaps = 39/276 (14%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCG 215
             +Y+          +E      TP +VV      + D     F +S       + DP  G
Sbjct: 849  TLYDKFFSTAFKSTTERLGIVFTPIEVVDFIVKSVDDVLKKHFGKSLASEGVHILDPFTG 908

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM--LIRRLES 266
            TG F+   + ++ +     +I             H  E+   ++ +    +      +  
Sbjct: 909  TGTFIVRTLTYLKEQMDKGEITLADIARKFTQELHANEIVLLSYYIAAINIESTFDEING 968

Query: 267  D-----PRRDLSKNIQQGSTLSKDLFTGKRFH---------------YCLSNPPFGKKWE 306
            D     P   +       ST ++D      F                  + NPP+  +  
Sbjct: 969  DEQGYVPFEGIVLTDTFESTENEDTLDDAYFGTNDERLKRQQELPITAIIGNPPYSGRDS 1028

Query: 307  KDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             +    +                K S     +      +       L     G    + S
Sbjct: 1029 DENSFSDAISYQMLDTEITKTYAKKSSAVAVNALYDSYIRAIKWSSLRIEKCGVIGFITS 1088

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
            +S +           +R+ L +      I+ L   +
Sbjct: 1089 NSYIDKVAMDG----LRKSLNDEFNYIYIINLRGGV 1120


>gi|148826785|ref|YP_001291538.1| hypothetical protein CGSHiGG_00160 [Haemophilus influenzae PittGG]
 gi|148718027|gb|ABQ99154.1| HemK [Haemophilus influenzae PittGG]
          Length = 292

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 34/216 (15%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR          L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTESLVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L  +  +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSNAERNQLNVEFLQSRWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRA 356
           NPP+           + EH +    RF P    +++      L H+        N  G  
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNGV- 248

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
                   L       GE ++R   LEN    +E +
Sbjct: 249 -------LLLEHGWQQGE-KVRSIFLENYWEMVETV 276


>gi|294102319|ref|YP_003554177.1| hypothetical protein Amico_1336 [Aminobacterium colombiense DSM
           12261]
 gi|293617299|gb|ADE57453.1| conserved hypothetical protein [Aminobacterium colombiense DSM
           12261]
          Length = 1148

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+ +  +   + ++  +K+             ++G +  L +     E   +
Sbjct: 712 FDVVIANPPYIQLQKLRGNPLQNAYKSQNF------EVHNANGDIYCLFY-----EKGMD 760

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              +   ++  +     RA  GE ++RR+ LE + ++ ++ L   +F    + T + I+ 
Sbjct: 761 ILKKCGHLVFITSNKWMRAAYGE-KLRRFFLEYNPLQ-LIDLGPGIFDSATVDTNILIIQ 818

Query: 412 NRKTEE 417
             K + 
Sbjct: 819 KNKNKN 824


>gi|168244019|ref|ZP_02668951.1| hypothetical protein SeHB_A4623 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194451136|ref|YP_002048513.1| type II restriction enzyme, methylase subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194409440|gb|ACF69659.1| type II restriction enzyme, methylase subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205336952|gb|EDZ23716.1| hypothetical protein SeHB_A4623 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1640

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPDDALFKESPGMIR-----TLYDP 212
            I R      E +  + TP    R +V  A   L         +           T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDSITDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|162456357|ref|YP_001618723.1| hypothetical protein sce8073 [Sorangium cellulosum 'So ce 56']
 gi|161166939|emb|CAN98244.1| unknown protein [Sorangium cellulosum 'So ce 56']
          Length = 1089

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDP----DDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              A  + TPR++        L P    D      +  +   + DP  G+G FL +A   
Sbjct: 433 RRRAGSYYTPREITSHVVERTLSPLLGRDGRPAAPADVLALAVCDPAMGSGAFLVEACRQ 492

Query: 227 VA 228
           +A
Sbjct: 493 LA 494


>gi|315453952|ref|YP_004074222.1| Type I restriction restriction /modification enzyme [Helicobacter
           felis ATCC 49179]
 gi|315133004|emb|CBY83632.1| Type I restriction restriction /modification enzyme [Helicobacter
           felis ATCC 49179]
          Length = 1260

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L  +  S   + +  F T   +        L   D        +   + D  CG+G FL 
Sbjct: 442 LYLKNTSNSRKSSGSFYTNEQITKTLVEHALAHLD----NDNVLSFRILDNACGSGAFLI 497

Query: 222 DAMNHVADCGSHHKIPPILVPHGQEL 247
           +A++ V+     H  P +  P  QE 
Sbjct: 498 EALHQVSQKALAHNYPALQAPFEQEK 523


>gi|159905188|ref|YP_001548850.1| putative RNA methylase [Methanococcus maripaludis C6]
 gi|159886681|gb|ABX01618.1| putative RNA methylase [Methanococcus maripaludis C6]
          Length = 351

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              + DP CGTGGFL +A                    G +++ +     +  +    L 
Sbjct: 206 GEIVLDPFCGTGGFLIEAG------------FLGCKLIGSDIDEQMVKGAILNLNTYDL- 252

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-EHKNGELGRF 324
           S     + +N  +  +   +    ++    +++PP+G    K  D +E  E   G L   
Sbjct: 253 SKQVISIKQNDAKNVSKYLEELGIEKIDGIVTDPPYGISTSKKGDMLEIFEKIVGVLKDN 312

Query: 325 GPGLPKISDGSMLFLMHL 342
              +    +   L L  +
Sbjct: 313 DYLVFAAPNKMELDLNLI 330


>gi|95930932|ref|ZP_01313662.1| restriction enzyme alpha subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133058|gb|EAT14727.1| restriction enzyme alpha subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 131

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEER-RGKVQL-INATDLWTSIRNEGKKRRIIN-DDQ 448
           ++P +LF    + T + + +     +  + K        D +  I+N G+  R       
Sbjct: 2   SMPPELFSPVGVVTCIMVFTASIPHKTSKKKTWFGYWRDDGFIKIKNLGRVDRDHTWPAI 61

Query: 449 RRQILDIYVSRE 460
           R + ++ + +RE
Sbjct: 62  RDKWVEQFRNRE 73


>gi|331665953|ref|ZP_08366847.1| N6 adenine-specific DNA methyltransferase [Escherichia coli TA143]
 gi|331057004|gb|EGI28998.1| N6 adenine-specific DNA methyltransferase [Escherichia coli TA143]
          Length = 1634

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|170021859|ref|YP_001726813.1| hypothetical protein EcolC_3884 [Escherichia coli ATCC 8739]
 gi|169756787|gb|ACA79486.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
          Length = 1642

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|229587546|ref|YP_002860584.1| superfamily II DNA and RNA helicase [Clostridium botulinum Ba4 str.
           657]
 gi|229260318|gb|ACQ51355.1| superfamily II DNA and RNA helicase [Clostridium botulinum Ba4 str.
           657]
          Length = 1306

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 65/463 (14%), Positives = 146/463 (31%), Gaps = 94/463 (20%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            + +  +     + N K   E F+      ++E   +L +I  N   I+L          
Sbjct: 41  AQIDFFNLNPDITKNNKLKDEKFELK----QIENNSILTRIKNNIIAIKLAKKLKQQVRK 96

Query: 156 SNIYE-HLIRRFGSEVS--------------EGAEDFMTPRDVVHLATAL---------L 191
           ++++E  LI ++                   E  E+ +T  +  +  +++         +
Sbjct: 97  ADMFEKDLISQYSGWGGLQDLFQQNKYIKEREKIEELLTEEEYRNALSSINTSFYTNKSI 156

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           +       K+       + +P+CG G F+               I       G E E   
Sbjct: 157 ISFMHNALKKMGFKHGRVLEPSCGIGNFI---------GYMPQDIKSNSNIIGIEKE--- 204

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKD 310
                       L +     L +N +  +T  ++       F   + N PFG     DK+
Sbjct: 205 -----------GLAASIAAQLYQNAEIQNTGFENARILDNYFDVVVGNVPFGNIKVHDKN 253

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                                +  ++    +   K       GG  A++ SS  +     
Sbjct: 254 --------------------YNKYALSIHNYFIVKSLDKVRPGGIVALITSSFTM----- 288

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY--LWILSNRKTEERRGKVQLINAT 428
           GS  +++R  + E   + A + LP   F  TN      + IL  +            N +
Sbjct: 289 GSKTNKVREIIGEKANLIAAIKLPNIAFGNTNTTVVSDILILQKKLENH--------NES 340

Query: 429 DL--WTSIRNEGK----KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           +L  W  + NE          +     ++I + +      + +  L+ +        + +
Sbjct: 341 NLSKWLQVNNEINEYFSNNPKMIAGNIKEISEPFGKTYTVELNGNLEEKLNEILEY-IPQ 399

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +     +++  +   +  I   +   L+   + +  + +++Q
Sbjct: 400 EIYKEIDVEEKDVIWADDSIIEDEYVVLNNKLYQNNNRILIEQ 442


>gi|205374511|ref|ZP_03227307.1| hypothetical protein Bcoam_15611 [Bacillus coahuilensis m4-4]
          Length = 329

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 107/345 (31%), Gaps = 56/345 (16%)

Query: 82  NTSEYSLSTLGSTNT---RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
            T E   + L  T T        +Y+ + ++  + +F+       +  L K  L     K
Sbjct: 4   FTVEGFFNVLDETATIIKEELDITYLEALAETGENMFQGEVLQDDLHDLVKRKLS----K 59

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            +  ++L         +   Y+ +I + G + +      MTP  +  L T LL       
Sbjct: 60  QYESVQLSLTAKE--TIRKSYQLVILK-GMKENVQPNHQMTPDSIGLLMTFLLEKFLHEK 116

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-- 256
            +       T+ DPT GTG  L   MN + +           + +G +++     +    
Sbjct: 117 TE------LTILDPTVGTGNLLVTIMNRLHET--------FSLGYGVDVDDVLIRLAYVS 162

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           A +L                       + LF                        V    
Sbjct: 163 ANLL-----------EQPIQLYNQDSLEPLFVDP------------VDVVVSDLPVGYYP 199

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +     F     +    +      L  +       GG    ++ +    +  A    ++
Sbjct: 200 NDERAKSFALQANQGHSYA---HHLLIEQSINYTKPGGYLFFLIPNGLFESEYA----AD 252

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +R +L +   I+ I+ LPT LF     A  + I+  +  + R  K
Sbjct: 253 LRSYLKDEAYIQGILQLPTSLFKNERNAKSILIIQKKSADVRAPK 297


>gi|219851555|ref|YP_002465987.1| hypothetical protein Mpal_0910 [Methanosphaerula palustris E1-9c]
 gi|219545814|gb|ACL16264.1| hypothetical protein Mpal_0910 [Methanosphaerula palustris E1-9c]
          Length = 49

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 636 NFN-RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            F+ ++FY+    R   +I   ++ +E +   LL ++ 
Sbjct: 11  PFHVQYFYKSTLLRTQDEICVNIQNLEKETEGLLNQIV 48


>gi|124004979|ref|ZP_01689822.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
 gi|123989657|gb|EAY29203.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
          Length = 504

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 80/225 (35%), Gaps = 28/225 (12%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TP  +V          DD  +     + + + DP+CG G FL + +  +       
Sbjct: 15  GKVYTPAFIVE------KILDDVGYIGKRILGKKILDPSCGDGQFLKEIVKRILKESPSD 68

Query: 235 K---IPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQGSTLSKD 285
           K   +  +    G +++ E   +C++ +            S        NIQ  +TLS+ 
Sbjct: 69  KEAILENLSKVRGMDIDEEAIKICISDLNKLVEPYGINFPSKNVSKFDWNIQSENTLSQI 128

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               +RF + + NPP+ +        + +E +     R+       +D  + F  +   K
Sbjct: 129 DKGRERFEFIVGNPPYIRIQH-----LSEEDRYLIQTRYEFCKSGSTDTYIAFFEYCQKK 183

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           L    +  G   ++  ++  +          +R + +    I+ I
Sbjct: 184 L----SKNGICGLITPNTFFYTETG----RILRSYFINERKIKQI 220


>gi|15645106|ref|NP_207276.1| adenine specific DNA methyltransferase (VSPIM) [Helicobacter pylori
           26695]
 gi|2313588|gb|AAD07545.1| adenine specific DNA methyltransferase (VSPIM) [Helicobacter pylori
           26695]
          Length = 545

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 80/246 (32%), Gaps = 35/246 (14%)

Query: 79  SFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
              N S  S+     TN        + +    +SF D  +        +    +  K   
Sbjct: 13  HLINVSHSSVHNWIKTNLLEKLEIDHKIYVKTSSFLDFCRNHLGKNKLNKYANKSLKGVH 72

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            ++       +E+  ++     + + YE       +        + TP  +V     L  
Sbjct: 73  NHQEL-ILKYLEILENSSDLEKLGSYYEE---ELSNATRNLEGIYYTPNRIVE---QLFT 125

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
            P D    ++        DP  G+G F+  A+              +   +G + +    
Sbjct: 126 LPKDFDVSQA-----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAV 171

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           A+       +R++     D    +Q+     K      +F    +NPP+GKK+ +++   
Sbjct: 172 ALTK-----KRIKERYHLDCLNIVQKDFLNLKHTP---QFDCIFTNPPWGKKYNQNQKEN 223

Query: 313 EKEHKN 318
            K+  N
Sbjct: 224 FKQQFN 229


>gi|224436461|ref|ZP_03657475.1| hypothetical protein HcinC1_00880 [Helicobacter cinaedi CCUG 18818]
 gi|313142972|ref|ZP_07805165.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128003|gb|EFR45620.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 1111

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 88/314 (28%), Gaps = 75/314 (23%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +L     R L C     +S V         S       ++   ++  NT   S +  
Sbjct: 214 RDFVLRL-FSRILFCKFLEKKSIVDSAIWDTHLSQNYYHEVLEPLFFTTLNTPRESRNY- 271

Query: 92  GSTNTRNNLESYIASFSDNAKAIFED-----FDFSSTIARLEKAGLLYKIC-KNFSGIEL 145
                   + S + +       +F       FD  +  A +    +   +  + F+ +  
Sbjct: 272 --GFLPEQIISLLHAIPYLNGGLFSPQDNDFFDLQNPNAHINSLHISNDLFSELFATLNR 329

Query: 146 HPDTVPDRV------------MSNIYEHLIRRFGSEVS----------EGAEDFMTPRDV 183
           +  T+ +              +  I+E L+ +  ++            +    + TPR++
Sbjct: 330 YHFTIDEADESAVEVALDPELLGQIFESLLSQLFTDNKLEKLDKNSLRKATGSYYTPREI 389

Query: 184 VHLATA----------------------LLLDPD-------DALFKESPGMIR----TLY 210
           V                           L+ D         +A+  +   +       + 
Sbjct: 390 VRYMVRSAILLHLQTKLKGKVDSQFLESLVFDSSLRGSEATEAIHTQKTILQELATLKIL 449

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGML 260
           DP CG+G F    +N +    S       L            +G +++P    +      
Sbjct: 450 DPACGSGAFPMGILNEIIRIQSDLDDTRPLYTRKLEILQECIYGIDIQPMATEIARLRCF 509

Query: 261 IRRLESDPRRDLSK 274
           +  +  +   D+  
Sbjct: 510 LSLIIDENPSDIKP 523


>gi|219872308|ref|YP_002476709.1| adenine specific DNA methyltransferase [Borrelia garinii PBr]
 gi|219694353|gb|ACL34878.1| adenine specific DNA methyltransferase [Borrelia garinii PBr]
          Length = 487

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 13/159 (8%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            N+   I + S   K  F + ++           +  K+       +    T+ D  +  
Sbjct: 271 QNILKIIENISK--KDEFSNINWILKELISTVNNIDSKVVFKQLSFDKLGLTLKDPYL-Y 327

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRD----VVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            YE+ + ++   +      + TP+     +V     +L          +      + D  
Sbjct: 328 FYENFLAKYDRSLRSSKGVYYTPKSMVGFIVRSLHEILKKGFKLNNGFANKNEVKVLDFA 387

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
            GTG FL + +  + D             +G E     +
Sbjct: 388 TGTGTFLLEVIKTILDNHIFKN------LYGFEYLIAPY 420


>gi|328675473|gb|AEB28148.1| Adenine-specific methylase [Francisella cf. novicida 3523]
          Length = 314

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 78/249 (31%), Gaps = 46/249 (18%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIELHPDTVP 151
           S   + ++ + + +  D  +    +   ++            +      S I +  D   
Sbjct: 3   SQEKQQDIINNLHTIRDYIRWSISEMTLNNVYFGHGSESTWDEAVHLVLSAINVSNDIDS 62

Query: 152 DR------------VMSNIYE---------HLIRR--FGSEVSEGAEDFMTPRDVVHLAT 188
           +             ++  +Y+         +++++  F     +  E  + PR  +    
Sbjct: 63  NMVGSRLLIEEKKIIIDYVYQRACLRKPLPYILKKAWFAGMEFDIDERVIIPRSPI---A 119

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+ +       +   +  ++ D   G+G       N   +                 ++
Sbjct: 120 ELIRNEFSPWINDIDDVT-SVLDLCTGSGCIGIACSNVFEEANITL------------VD 166

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
               A+ VA        +  +  LS  ++   +   D   G++F   +SNPP+  K + +
Sbjct: 167 ISDDALAVAN------HNIKKHQLSDRVRAIKSDLFDNLHGQKFDLIVSNPPYVDKEDLN 220

Query: 309 KDAVEKEHK 317
               E  ++
Sbjct: 221 SMPQEYHYE 229


>gi|311069434|ref|YP_003974357.1| putative nucleic acid methyltransferase [Bacillus atrophaeus 1942]
 gi|310869951|gb|ADP33426.1| putative nucleic acid methyltransferase [Bacillus atrophaeus 1942]
          Length = 328

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 40/220 (18%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGMLI 261
               T+ DP  GTG  L   +N         +   I   +G E++     +    A +  
Sbjct: 116 KKDMTILDPAAGTGNLLLTVLN--------QQSEQIAKSYGIEIDDVLLKIAYAQANLQE 167

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           + +E   +  L                       + + P G  +  D+ A   E K  E 
Sbjct: 168 KEIELFHQDSLEPVFV------------DPVDAVICDLPVGF-YPNDEGAKAYELKADEG 214

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F                    +       GG    ++ +    + ++     +++R+ 
Sbjct: 215 HSFAH-------------HLFIEQSVKHTKPGGYLFFMIPNHLFDSAQSD----KLKRFF 257

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            E   + A++ LP  LF     A  + +L  +  + +  K
Sbjct: 258 SEKVHLNALLQLPQSLFKDEAHAKSILVLQKQGDQTKPPK 297


>gi|307688883|ref|ZP_07631329.1| helicase domain protein [Clostridium cellulovorans 743B]
          Length = 1021

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 61/232 (26%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L+++      +        + +P  G G F +   N                 +G EL+ 
Sbjct: 573 LIIENIYKALENFGFKEGNILEPAMGVGNFFSMIPN----------TMNKSKLYGVELDD 622

Query: 250 ETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            +  +       A + I+  E+              T   D F    F   + N PFG  
Sbjct: 623 ISGRIAKQLYQKANIKIQGFET--------------TDYPDNF----FDVAIGNVPFGDY 664

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D                    P     + +   +   K       GG  A + S   
Sbjct: 665 KLYD--------------------PTYDKHNFMIHDYFFGKALDKVRPGGIIAFITSKGT 704

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           L           +R+++ +   +   + LP   F     T +   +  L  R
Sbjct: 705 LDKENPS-----VRKYIAQRADLVGAIRLPNTAFKANANTEVTADILFLQKR 751


>gi|62260141|gb|AAX77884.1| unknown protein [synthetic construct]
          Length = 349

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +++++  F     +  E  + PR  +     L+ +       +   +  ++ D   G+G 
Sbjct: 119 YILKKAWFAGMEFDIDERVIIPRSPI---AELIRNEFSPWINDIDDVT-SVLDLCTGSGC 174

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 N   D                 ++    A+ VA        +  +  LS  ++ 
Sbjct: 175 IGIACSNVFEDANITL------------VDISDDALAVAN------HNIKKHQLSDRVRA 216

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +   D   G++F   +SNPP+  K + D    E  ++
Sbjct: 217 IKSDLFDNLHGQKFDLIVSNPPYVDKQDLDTMPHEYHYE 255


>gi|304395576|ref|ZP_07377459.1| conserved hypothetical protein [Pantoea sp. aB]
 gi|304356870|gb|EFM21234.1| conserved hypothetical protein [Pantoea sp. aB]
          Length = 1633

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIEPIADPHAKADAILKLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDQYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDTFVPWFGYQLHC 691


>gi|85858206|ref|YP_460409.1| type II restriction enzyme, methylase [Syntrophus aciditrophicus
           SB]
 gi|85721297|gb|ABC76240.1| type II restriction enzyme, methylase [Syntrophus aciditrophicus
           SB]
          Length = 1242

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 82/300 (27%), Gaps = 70/300 (23%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            ++L  +  P+     I E+  R+F ++    A+                          
Sbjct: 481 ELDLTEEKRPNDE--QIEEY--RKFLADRRRTAKAAGA-------------WLQSLQAYR 523

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCG------------------SHHKIPPILV-- 241
                  + DP CG+G FL   +  +                          I  IL   
Sbjct: 524 RRLRELKVVDPACGSGAFLIQTLERLKREHRWVADETDRIVGLAELWDQDVVINDILANN 583

Query: 242 PHGQELEPETHAVCVAGMLIR---------RLESDPRRDLSKN------IQQGSTLSKD- 285
            HG +L  E+  +    + +           L+ + R   S         +Q    S+D 
Sbjct: 584 LHGVDLNAESVEITKLALWMHTASAGKPLSSLDRNIRCGNSLVGPDFYANRQPDLFSEDE 643

Query: 286 ---------------LFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNGELGRFGPGL 328
                          +F    F   + NPP+ K   + + + +V +           P  
Sbjct: 644 RERINAFDWKETFPGIFDQGGFDCVIGNPPYVKLQNFRRVQSSVAEYLLEARRADGAPLY 703

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                G+    +    K        GR   +  +  + N       + ++R    +  ++
Sbjct: 704 ASTRTGNFDLYLPFIEKGLDLLRPDGRMGYIAPNVWMMNEYGRGLRAVVKRNRRLDRWVD 763


>gi|139474118|ref|YP_001128834.1| hypothetical protein SpyM51296 [Streptococcus pyogenes str.
           Manfredo]
 gi|306828385|ref|ZP_07461625.1| phage protein [Streptococcus pyogenes ATCC 10782]
 gi|134272365|emb|CAM30621.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
 gi|304429422|gb|EFM32491.1| phage protein [Streptococcus pyogenes ATCC 10782]
          Length = 211

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 23/167 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS-- 171
           ++ I +L     +YK       I L  +   D     +       Y+  ++ F  E +  
Sbjct: 4   TNQIHKLLGVKEVYKAPDTLIKIILDKEKREDLFGQFLKYETDVSYDWFMQYFEEEQADR 63

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DC 230
           +  +   TP+ V  L + ++                  Y+   GTGG L  A      + 
Sbjct: 64  KNKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLND 110

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                 P     H +EL  +     +  M IR +        S   Q
Sbjct: 111 SPFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|167629296|ref|YP_001679795.1| type ii restriction enzyme methylase subunit, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592036|gb|ABZ83784.1| type ii restriction enzyme methylase subunit, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 1155

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K +   ++NPP+          +   + N EL RF       + G +        ++E  
Sbjct: 492 KTYDVVITNPPY----------MGIRNMNPELRRFLREHYPRTKGDL--FAAFMERMESL 539

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATY 406
              GG    V   S +F         E RR LL    I A+V +      + F T +AT 
Sbjct: 540 VAEGGYHVTVTMQSWMFLTT----YEEYRRHLLREYGIIAMVHMANMVMGIAFGT-VAT- 593

Query: 407 LWILSNRKTE 416
             +L     +
Sbjct: 594 --VLRKGDPK 601


>gi|195394858|ref|XP_002056056.1| GJ10432 [Drosophila virilis]
 gi|194142765|gb|EDW59168.1| GJ10432 [Drosophila virilis]
          Length = 491

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 19/220 (8%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D +  R+M+    HLI++   +  +   +      +  L     +  D           
Sbjct: 166 EDILFGRMMAQGQRHLIKQLSLKQRKFIGNTSMDAQLSLLMANQAMVRD----------G 215

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             ++DP  GTG  L  A               ++    +              +   L+ 
Sbjct: 216 DLVFDPFVGTGSLLVSAAKFGGYVLGADIDFMMVHARCRPSRITQKVRDKDESIRANLQQ 275

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   ++      +        F   +++PP+G +   +K   +   K         
Sbjct: 276 YGCADRYMDVLVADFSNPLWHRRITFDSIITDPPYGIREATEKVENKFNPKENTRTAAMA 335

Query: 327 GLPKISDGSML-----FLMHLANKLELPPNGGGRAAIVLS 361
             P  S  S+       L   A  L+L    GGR    L 
Sbjct: 336 HYPSTSHYSLQHLYADLLQFGATHLKL----GGRLVCWLP 371


>gi|330829720|ref|YP_004392672.1| adenine-specific methylase YfcB [Aeromonas veronii B565]
 gi|328804856|gb|AEB50055.1| adenine-specific methylase YfcB [Aeromonas veronii B565]
          Length = 315

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 23/152 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +        E  + PR  +     ++ +      K  P     + D   G+G       +
Sbjct: 103 YAGWEFYVDERVLIPRSPI---AEMVANRFAPFLKHEPT---RIMDLCTGSGCIAIIMAH 156

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              +                ++  +   V    +    LE       S   +       D
Sbjct: 157 EFPEAEVDA----------IDISVDALNVAERNINDHGLEQQVIPIRSDLFR-------D 199

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           L  G ++   +SNPP+    +      E  H+
Sbjct: 200 LPAGDKYDLIVSNPPYVDSEDMSDLPDEFRHE 231


>gi|78043617|ref|YP_358926.1| hypothetical protein CHY_0054 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995732|gb|ABB14631.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 249

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  + D   G G           + G           +G E++ + + + V  + +
Sbjct: 44  KTAPNDRVVDLGTGNGVVPLLLYGRNREIGK---------IYGIEIQEKLYQLAVKSVAL 94

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
             LE      L      G         GK F    +NPP+ KK E   + V
Sbjct: 95  NNLEEKIEIIL------GDLKDAPAILGKGFDVVTANPPYRKKGEGRLNPV 139


>gi|19745472|ref|NP_606608.1| hypothetical protein spyM18_0356 [Streptococcus pyogenes MGAS8232]
 gi|19747588|gb|AAL97107.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
          Length = 214

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 23/166 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS--E 172
             I R+     +YK  K    I    D+  D     +       Y+  +R F  E +  +
Sbjct: 9   DEIHRILGIDEVYKAPKRLMDILFDKDSREDIFRQFLDIETDLSYDWFMRYFEDEHADRK 68

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
             +   TP  V  L T L+                T ++   GTGG L  A        +
Sbjct: 69  NKKQDFTPLSVSKLLTGLV-------------SGHTYHESAVGTGGILIQAWQRHRISSN 115

Query: 233 HHKIPPILVPHG-QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                P    +  +EL        +  M IR +        S   Q
Sbjct: 116 PFTYKPSDYWYQVEELSDRALPFLLFNMSIRGINGVVVHGDSLTRQ 161


>gi|213961903|ref|ZP_03390169.1| hypothetical protein CAPSP0001_2286 [Capnocytophaga sputigena
           Capno]
 gi|213955692|gb|EEB67008.1| hypothetical protein CAPSP0001_2286 [Capnocytophaga sputigena
           Capno]
          Length = 1050

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 96/300 (32%), Gaps = 29/300 (9%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD-VVHLA 187
           K      + +++ GI+L        V   IYE  +  FG   +   +   T  D +    
Sbjct: 540 KIMQGNSLLESYEGIDLSKLATMSDV--QIYEPQLNLFGEMEAPQPKVIYTQTDKLKEFQ 597

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L    +    +E   +  ++ D    T  +  +      +     K    L     E 
Sbjct: 598 ANLKRYFEPITHEERTRLRNSIDDYVRHTITYTLEVHKQSEE---RKKEQICLSTTFTEK 654

Query: 248 EPETHAVCVAGML--------IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           + +  A   A M+        ++ +E         +       S+    G  F   + NP
Sbjct: 655 QKKAIAEAEANMVHLNEMIENVQNMELINSDFFLWHTWFHDVFSRPSKEG--FDIVIGNP 712

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+G K + ++  + K  +N  +     G+   +D   +F+    N L       G    +
Sbjct: 713 PYGAKIDNNQKTIIK--RNYTVANTSNGIKGSTDTFCVFIEKGFNLLR----KDGTLTYI 766

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---PTDLFFRTNIATYLWILSNRKTE 416
           +  S   +   G    ++ R L  N     + +    P  +F    +   +   +  +T 
Sbjct: 767 IPMSFTSSDAMG----QVHRLLFGNCDTLRVSSFSNRPKQIFEDAGLRVSIISFTRSETP 822


>gi|299483503|gb|ADJ19584.1| helicase domain-containing protein [Treponema primitia ZAS-2]
          Length = 1659

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 2/153 (1%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           S + + I    +  +T    E+    Y   +  +   L       RV+S++Y+   R   
Sbjct: 816 SQSMQGIINVLNEKTTKEDSEQLDRFYVSVRKRAE-GLDNGEAKQRVISDLYDKFFRTAF 874

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             V+E      TP ++V      + D       +        + DP  GTG F+T  +  
Sbjct: 875 PLVTEKLGIVYTPVEIVDFIIHSVEDVLQKEFSRSLSDENVHILDPFTGTGTFITRLLQS 934

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                   +       H  E+    + +    +
Sbjct: 935 GIIRPEDLERKYNKEIHANEIMLLAYYIASINI 967


>gi|167754264|ref|ZP_02426391.1| hypothetical protein ALIPUT_02557 [Alistipes putredinis DSM 17216]
 gi|167658889|gb|EDS03019.1| hypothetical protein ALIPUT_02557 [Alistipes putredinis DSM 17216]
          Length = 273

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +  L + + +   ++  K     I ++ DPT G+G  L  A             
Sbjct: 113 FFTPAHITDLMSKITMGKQESDAK-----ILSVCDPTAGSGRTLLAAKA----------D 157

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRR 263
            P       +++     +CV   LI  
Sbjct: 158 RPQSYLVAWDIDYTCCLMCVCNFLING 184


>gi|68249926|ref|YP_249038.1| hypothetical protein NTHI1574 [Haemophilus influenzae 86-028NP]
 gi|145631801|ref|ZP_01787561.1| HemK [Haemophilus influenzae R3021]
 gi|68058125|gb|AAX88378.1| HemK [Haemophilus influenzae 86-028NP]
 gi|144982591|gb|EDJ90141.1| HemK [Haemophilus influenzae R3021]
          Length = 292

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 23/178 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR          L       +E+P     + D   GTG       + +        IP
Sbjct: 92  LIPRPDTESLVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELEPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L  +  +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSNAERNQLNVEFLQSRWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSMLFLMHLANKLELPPNGGG 354
           NPP+           + EH +    RF P    +++      L H+        N  G
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDAGYADLRHIIELASSYLNSNG 247


>gi|317057869|ref|YP_004106336.1| DNA mismatch repair protein MutS domain-containing protein
            [Ruminococcus albus 7]
 gi|315450138|gb|ADU23702.1| DNA mismatch repair protein MutS domain protein [Ruminococcus albus
            7]
          Length = 3387

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 55/213 (25%), Gaps = 50/213 (23%)

Query: 204  GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                 + +P+CG G FL  A                    G E++  T  +         
Sbjct: 1888 FKGGKVLEPSCGIGNFLGCA---------PTDKAANYQFTGVEIDSITGRIAK------- 1931

Query: 264  LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                  +   +   Q +           F   + N PF      D+   +  H       
Sbjct: 1932 ------QLYPQAKIQVTGFQNADVKDNYFDVVIGNVPFANYSVTDRKYNKSNH------- 1978

Query: 324  FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                         L   +   K       GG  A++ SS  +    A     ++R  +  
Sbjct: 1979 -------------LIHDYFILKSLDLTRAGGVVAVITSSGTMDKVSA-----KVRTEISN 2020

Query: 384  NDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
               +   + LP   F     TN    +  L  R
Sbjct: 2021 KAKLIGAIRLPDTAFEKNAGTNAVADILFLQKR 2053


>gi|189459596|ref|ZP_03008381.1| hypothetical protein BACCOP_00222 [Bacteroides coprocola DSM 17136]
 gi|189433678|gb|EDV02663.1| hypothetical protein BACCOP_00222 [Bacteroides coprocola DSM 17136]
          Length = 615

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 33/232 (14%)

Query: 208 TLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR---- 262
           ++ D  CGTG F    ++ +  +     +   +      +++P   A+     L R    
Sbjct: 153 SVLDFACGTGRFYDCIVDILDKEYAIPPEKSILNNIFAVDIDPVAVAITRMKALARLKEP 212

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK--------------RFHYCLSNPPF----GKK 304
            +    +   +   +        +F+ +               F   +SNPP+      K
Sbjct: 213 SVSDIEKICGNIIRRNALIQENIMFSDECPLKNSDFEGKVNGGFDVIVSNPPYLVLKPDK 272

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            +   +  ++        R         +G +        K+       G   ++  S+ 
Sbjct: 273 KKISGNKADRILMWVSWFRTSGAYHYALEGMLNLYQLSIEKMIRMLKRNGYLGVICPSTL 332

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIV----ALPTDLFFRTNIATYLWILSN 412
                A    +++R++LLE + +  I     ++P  LF     +T ++ L  
Sbjct: 333 F----ADLSTTKLRKFLLEKNKVCEIKYFRESIP--LFDNVTQSTNIFYLQR 378


>gi|288594|emb|CAA68551.1| methylase [Thermus aquaticus]
          Length = 363

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNAAPRSLGRVETPPEVVDFMVSLAEAPR----------GGRVLEPACAHGPFL- 54

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +              G E++P                     DL    +    
Sbjct: 55  ---RAFREAHGTAY-----RFVGVEIDP------------------KALDLPPWAEGILA 88

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                  G+ F   L NPP+G   E  K  +       +L +      K   G       
Sbjct: 89  DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK---GKYNLYGA 145

Query: 342 LANKLELPPNGGGRAAIVLS 361
              K       GG    V+ 
Sbjct: 146 FLEKAVRLLKPGGVLVFVVP 165


>gi|241895671|ref|ZP_04782967.1| adenine-specific methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241871038|gb|EER74789.1| adenine-specific methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 334

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 102/351 (29%), Gaps = 60/351 (17%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE------DFDFSSTIARLEKAGLL 133
            Y   E S+  L S   +      IAS  +    +FE      D D+ S   + ++    
Sbjct: 1   MYEKIEVSVKNLQSAQQKLVAFLDIASI-EALIILFEIMLGQTDNDWESLSHKQQQDLKK 59

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV---VHLATAL 190
                 FS ++L            + + L+     +    A   +TP  +   +      
Sbjct: 60  DVQAAKFSDLQL-------VDRRQVLQFLLVSTIHQDGLQANYQVTPDAIGMWIAFIAEK 112

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
             +    +  +         +   GTG  L      +   G        +   G E +  
Sbjct: 113 FTEGKTDVHLK---------EIAVGTGNLLATISQALQSAGKK------VHIQGFENDDT 157

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
              V      +  L    +  L+  +    T              + + P G        
Sbjct: 158 MLTVASGVAAL--LNESWQLTLTDGVTTPMTGDA--------DIIIGDLPIGY------- 200

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              KE     + R   G        + F+ HL  +  +     G  AI+   S LF    
Sbjct: 201 -YPKEVPKSFVTRIEEG--------LTFVHHLLIEQSVAALKPGGLAILTVPSNLFESDQ 251

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
                   +   +    ++++ LP++LF  + +   + IL     +  + K
Sbjct: 252 SKKLLSYLQ--TDEVYFQSLIQLPSNLFKDSKLRKVILILQRSGADAVQAK 300


>gi|227432549|ref|ZP_03914532.1| adenine-specific DNA methylase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351685|gb|EEJ41928.1| adenine-specific DNA methylase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 329

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 101/321 (31%), Gaps = 50/321 (15%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIR 164
           S+ D    I ED   +S     E       + +   S I++    +         +  + 
Sbjct: 27  SYIDALIEILEDI--NSQTVHREFDKPSNDVVQIIQSTIDMGWSLLSPAEKRKALQLAVL 84

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   E    A   +TP  + +L    +                T+ D   G+G  L    
Sbjct: 85  KANREDQTPANYQITPDGIGYLLADFI------NQTAGLRDNDTIIDMNVGSGNLL---- 134

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLS 283
                   +  +   +   G + +    A+  A   +I   E+   ++ + +I++     
Sbjct: 135 -----WTINEMLDVTVKRIGIDNDETQLALASATDEIINSDETTLYKEDTISIEEPP--- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +    +++ P G    +  D     ++NG                      L 
Sbjct: 187 -------KAKVVVADLPVGYYPLQQSDKFITRNQNGRSF---------------VHHLLI 224

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            K        G   +++ ++ L     G    ++ +++     ++A + LP + F     
Sbjct: 225 EKSLDFVADDGWIYLLVPANVL----NGDEAKKVLQFVTSRAQLKAFLQLPNEFFQDARA 280

Query: 404 ATYLWILSNRKTEERRGKVQL 424
           A  + +L  ++T  +  +V +
Sbjct: 281 AKAILVLKKQRT--KNNEVLM 299


>gi|115391053|ref|XP_001213031.1| NAD-dependent histone deacetylase SIR2 [Aspergillus terreus
           NIH2624]
 gi|114193955|gb|EAU35655.1| NAD-dependent histone deacetylase SIR2 [Aspergillus terreus
           NIH2624]
          Length = 1068

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 49/166 (29%), Gaps = 15/166 (9%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
             +  YDP  GTG F   A +  A               G++ +       +A      +
Sbjct: 733 PGKIFYDPFVGTGSFCVAAAHFGAATFGSD--IDGRSFRGRDQKHGEPIGLLANFRQYGI 790

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW--------EKDKDAVEKEH 316
           ES+     + ++         L  G      + +PP+G +         E  + AV    
Sbjct: 791 ESNYLDAFTSDLTNTPLRDCPLLDG-----IVCDPPYGVREGLRVLGTREGGRQAVPVWD 845

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 R G   PK   G    L  +           GR A+ +  
Sbjct: 846 GVPVHLRPGYIAPKKPYGFEAMLGDILAFAARTLVTDGRLAMWMPD 891


>gi|313115905|ref|ZP_07801333.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621773|gb|EFQ05300.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1922

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 70/258 (27%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +       T   V+           DA+ K        + +P+ G G F    
Sbjct: 381 EEYAAARASTLNAHYTSPVVIRAI-------YDAVEKMGFQSGN-ILEPSLGIGNFF--- 429

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
                  G           +G EL+  T  +       A + +   E+  RRD       
Sbjct: 430 -------GMLPSGMADSRLYGVELDSITGRIAQKLYPQADITVAGFETTDRRDF------ 476

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                        +   + N PFG+    DK             + G  +          
Sbjct: 477 -------------YDLAVGNVPFGQYKVNDKA----------YNKLGFSIHN-------- 505

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             +   K       GG  A V S   + +  + +     R+++ E   +   + LP + F
Sbjct: 506 --YFFAKTIDQIRPGGVIAFVTSRFTMDSKDSSA-----RKYMAERADLLGAIRLPNNAF 558

Query: 399 ---FRTNIATYLWILSNR 413
                T + + +  L  R
Sbjct: 559 KANASTEVVSDILFLQKR 576


>gi|307127309|ref|YP_003879340.1| SNF2 family protein [Streptococcus pneumoniae 670-6B]
 gi|306484371|gb|ADM91240.1| SNF2 family protein [Streptococcus pneumoniae 670-6B]
          Length = 2074

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 62/231 (26%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 490 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIREKSE---------LYGVELDS 540

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 541 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 587

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                          +   +           GG+ +I+ S   +    
Sbjct: 588 NYDRP---------------------YMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 626

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  +      V LP   F     T + T L      + + 
Sbjct: 627 DN-----VLQEIKSSTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 672


>gi|400282|sp|P25201|MTA1_ACICA RecName: Full=Modification methylase AccI; Short=M.AccI; AltName:
           Full=Adenine-specific methyltransferase AccI
 gi|216197|dbj|BAA01523.1| AccI methylase [Acinetobacter calcoaceticus]
          Length = 540

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 89/295 (30%), Gaps = 60/295 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  + +     +L             ++T+ +P  G G F    ++   + 
Sbjct: 26  RKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLGVFSRAILSQQKEI 76

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                          E++                        + NI     +  D     
Sbjct: 77  N----------IKAFEVDETIFENAK---------EYFDDFENVNILLQDYMYNDWKN-- 115

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   + NPP+ K  + D   + KE +     +         +G          K     
Sbjct: 116 KYDGIICNPPYFKFHDYDNKNILKEIETNLKCKL--------NGFTNLYTLFLLKSIHQL 167

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTDLFFRTNIATYLW 408
           +  GR A ++ S  L +         ++ +L+++  +    ++    ++F        + 
Sbjct: 168 SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTASII 223

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           + +N   +    KVQ            N  +  + ++  +  +I++ Y +    +
Sbjct: 224 LCAN---DNITDKVQF-----------NNIQSLQDLS--KIDEIINKYPNFLETE 262


>gi|269929046|ref|YP_003321367.1| hypothetical protein Sthe_3145 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788403|gb|ACZ40545.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 1007

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 52/191 (27%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-------------------- 189
           V   ++  ++E L+          +  + TP+ +V                         
Sbjct: 350 VDPEMLGKVFEELV-----TGRHESGSYYTPKPIVAFMCREALKGYLGSILPAEPAAAIE 404

Query: 190 -LLLDPDDALFKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--- 240
             + + D    ++   ++       + DP  G+G +L   ++ + D          L   
Sbjct: 405 RFVEEHDPGGLRDPEAVLDALRRVRVCDPAVGSGAYLLGMLHELLDLRQSLFQAQRLDPI 464

Query: 241 ------------VPHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKNIQQGSTL 282
                         +G +L+P    +    + +         E  P  +L   I+QG ++
Sbjct: 465 STYQRKLEILRNNLYGVDLDPFAVNIAQLRLWLSLAVEFEGSEPQPLPNLDFKIEQGDSI 524

Query: 283 SKDLFTGKRFH 293
                      
Sbjct: 525 LGAAPPSLEHD 535


>gi|269839667|ref|YP_003324359.1| hypothetical protein Tter_2649 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791397|gb|ACZ43537.1| protein of unknown function DUF559 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1712

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 27/139 (19%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDP----------DDALFKESPGMIRTLYDPTCGTGGF 219
             +    + TP  +V       L+P           D   +E   +   + DP  G+G F
Sbjct: 477 ERKQTGSYYTPPSLVRQLIKTALEPVIEQRLKEAGHDRQRQEEALLNLRVCDPASGSGHF 536

Query: 220 LTDAMNHVA------DCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRR 263
           L  A   +A        G     P               +  +  P    +C   + I  
Sbjct: 537 LLAAARRIARELARVRTGEEEPSPQAYRQALRDVIRECIYAVDKNPLAVDLCKVALWIEG 596

Query: 264 LE-SDPRRDLSKNIQQGST 281
                P   L  +I+ G +
Sbjct: 597 YNTGMPLSFLDNHIKCGDS 615


>gi|304386986|ref|ZP_07369244.1| methylase [Neisseria meningitidis ATCC 13091]
 gi|304338943|gb|EFM05039.1| methylase [Neisseria meningitidis ATCC 13091]
          Length = 270

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 35/123 (28%)

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPETHA 253
           DP CG G FL  A + +                            +   HG E++  T  
Sbjct: 91  DPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEFTVL 150

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQ---------------QGSTLSKDLFTGKRFHYCLSN 298
           +    M ++  + + R  +  + +                 ++L       +   Y   N
Sbjct: 151 IARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYIFGN 207

Query: 299 PPF 301
           PPF
Sbjct: 208 PPF 210


>gi|260890843|ref|ZP_05902106.1| putative type II restriction enzyme, methylase [Leptotrichia
           hofstadii F0254]
 gi|260859396|gb|EEX73896.1| putative type II restriction enzyme, methylase [Leptotrichia
           hofstadii F0254]
          Length = 813

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 126/385 (32%), Gaps = 61/385 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCG------------------SHHKIPPILVPHGQELEP 249
            + DP CG+G FL  A  ++ +                       K        G +L  
Sbjct: 237 KIVDPACGSGAFLITAFEYLLNYNNYLNDKIFDLTGTKDLFSDTTKEILQNNIFGVDLNK 296

Query: 250 ETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKDL-----------------FTGKR 291
           E+  +    + ++  + +     L  NI+ G++L  D+                 F    
Sbjct: 297 ESVEITKLSLWLKTADKNKTLATLENNIKCGNSLIDDIEIAGELAFNWEKEFPQVFENGG 356

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+          +    +N    ++   L    D   L+ + +   +     
Sbjct: 357 FDVVVGNPPY-----VSTKQIPVNDRNYYWDKYKEILFSEMD---LYEIFIYKSINELLK 408

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWI 409
             G    +   S   N         +R++LLE   I  I+  P     F   N  T + I
Sbjct: 409 NKGYLGFITRDSYFTNTS----FELLRKYLLEKTKIIEIIDFPYRFYPFKEVNTETAILI 464

Query: 410 LSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENGKF 464
           L+ +  +     +V   N  +L+  ++   K    ++ +   +IL  Y ++     N   
Sbjct: 465 LNKKIDKNFVNLRVSNRNVNNLY--LKESLKNNIQLSQE---EILMKYNNKIIVNINSIL 519

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +++L         +++ +         K GL  +E  I + K   +  +   +  + +  
Sbjct: 520 NKLLKNSLRFGNYLELHKGWMSIPKKIKIGLIEIEKGI-FTKEEAIKNNIINNCSEYLEG 578

Query: 525 QIYPYGWAESFVKESIKSNEAKTLK 549
           +     + +   K     N  KT K
Sbjct: 579 KDIHRYFTDKVNKYVYIKNIDKTTK 603


>gi|157103468|ref|XP_001647995.1| hypothetical protein AaeL_AAEL003922 [Aedes aegypti]
 gi|108880526|gb|EAT44751.1| conserved hypothetical protein [Aedes aegypti]
          Length = 493

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 17/167 (10%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +YDP  G+G  L  A    A           +  HG+  +P           +R 
Sbjct: 215 KKGDVVYDPFVGSGSLLVAAAKFGAYVLGTD--IDYMTVHGK-SKPT-----RVNQKVRD 266

Query: 264 LESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            +     +L +   +G                +   F   +++PP+G +   ++   + +
Sbjct: 267 ADESIYANLKQYGCEGQFLDVLVSDFSRSIWKSDFLFDSIITDPPYGIREATERIEFKTQ 326

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMH-LANKLELPPNGGGRAAIVLS 361
            ++  L       P  S      L   L N        GGR      
Sbjct: 327 KRSTCLNEGSVHYPSTSPYQFDQLYRDLMNFSARYLKLGGRLVCWFP 373


>gi|313472107|ref|ZP_07812599.1| phage protein [Lactobacillus jensenii 1153]
 gi|313449069|gb|EFR61326.1| phage protein [Lactobacillus jensenii 1153]
          Length = 248

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 19/165 (11%)

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +   F + + ++           K    ++L    V        +E  +        +  
Sbjct: 15  QHIQFENYLRKIVFDPEKRNDFFKQL--LKLDAQCVVQDTFKQYFEEYV-----AERKAN 67

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKES------PGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +   TP +V  L + ++    +A FK             T  D T GTG  L       A
Sbjct: 68  QQDYTPDEVSKLLSIIVNTKYNADFKNDIEKRYFHKKGYTAADITAGTGSLLIQ--KWWA 125

Query: 229 DCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  +      +P        EL        +  + +R + +    
Sbjct: 126 DMTAELPWTYVPHRYFYFASELADNVIPYLLCNLALRGMNAIVVH 170


>gi|21910487|ref|NP_664755.1| hypothetical protein SpyM3_0951 [Streptococcus pyogenes MGAS315]
 gi|28876235|ref|NP_795456.1| hypothetical protein SpyM3_0951 [Streptococcus pyogenes phage
           315.2]
 gi|28895817|ref|NP_802167.1| hypothetical protein SPs0905 [Streptococcus pyogenes SSI-1]
 gi|21904686|gb|AAM79558.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28811066|dbj|BAC64000.1| conserved hypothetical protein (phage associated) [Streptococcus
           pyogenes SSI-1]
          Length = 211

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 23/167 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-------YEHLIRRFGSEVS-- 171
           ++ I +L     +YK       I L  +   D     +       Y+  ++ F  E +  
Sbjct: 4   TNQIHKLLGVEEVYKAPDTLMKIILDKEKREDLFRQFLKYETDVSYDWFMQYFEEEQADR 63

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DC 230
           +  +   TP+ V  L + ++                  Y+   GTGG L  A      + 
Sbjct: 64  KNKKQDFTPKSVSTLLSKII-------------SGNQYYEVAVGTGGILIQAWQEQRLND 110

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                 P     H +EL  +     +  M IR +        S   Q
Sbjct: 111 SPFTYRPSKYWYHVEELSDKAVPFLLFNMSIRGINGVVVHGDSLTRQ 157


>gi|298252839|ref|ZP_06976633.1| modification methylase AccI [Gardnerella vaginalis 5-1]
 gi|297533203|gb|EFH72087.1| modification methylase AccI [Gardnerella vaginalis 5-1]
          Length = 525

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 82/235 (34%), Gaps = 36/235 (15%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL---TDAMNHVADCGS 232
            +    ++       L   ++ +          + +P+ G G F+    ++   +     
Sbjct: 8   YYTNSDEITSYMVNRLEIEENDI----------ILEPSAGEGIFIDQILNSNKMIQIDAL 57

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---- 288
                 I + + +  +  +  V     L+     D        I+Q  TL  +       
Sbjct: 58  DINAEAIKILNSKYQDLPSITVRETDTLL-DERLDLLSSPELWIKQTDTLLDEQLNFFGS 116

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G  ++  + NPP+G   + DK A  K+   G+          + +   LFL+   + L 
Sbjct: 117 IGGHYNKVIGNPPYGAWQDYDKRAQLKKKYPGQY---------VKETYSLFLLRCISLLR 167

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                GGR + ++  + LF        +++R  LL +  I  I+  P+  F   +
Sbjct: 168 ----NGGRLSFIIPDTYLFLNL----HAKLRELLLTSTRIIEIITFPSKFFPGVS 214


>gi|117619640|ref|YP_856879.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561047|gb|ABK37995.1| adenine-specific methylase YfcB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 311

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 23/152 (15%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +        E  + PR  +     ++ +      K  P     + D   G+G       +
Sbjct: 99  YAGWEFYVDERVLIPRSPI---AEMVANRFAPFLKHEPT---RIMDLCTGSGCIAIIMAH 152

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              +                ++  +   V    +    LE       S   +       D
Sbjct: 153 EFPEAEVDA----------IDISVDALNVAERNINDHGLEQQVIPIRSDLFR-------D 195

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           L  G ++   +SNPP+    +      E  H+
Sbjct: 196 LPVGDKYDLIVSNPPYVDSEDMSDLPDEFRHE 227


>gi|119358135|ref|YP_912779.1| hypothetical protein Cpha266_2367 [Chlorobium phaeobacteroides DSM
           266]
 gi|119355484|gb|ABL66355.1| hypothetical protein Cpha266_2367 [Chlorobium phaeobacteroides DSM
           266]
          Length = 203

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 18/183 (9%)

Query: 390 IVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           IV+LP  +F      + T     S  ++  +      I   DL +    +  K+  +   
Sbjct: 9   IVSLPGGVFTAAGAGVKTNHLFFSKGQSTRK------IWYYDLSSI---KVGKKTPLTIK 59

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              +   +   R + + S  ++      +  +   P +         +A+L       +L
Sbjct: 60  TFEEFFRLLPERPDSELSWTINMDERKQKAAEEACPFKEKATATSQKVAQLS-----ERL 114

Query: 508 SPLHQSFWL--DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
             L ++F     +++   + I              K  +     +KA      A  +   
Sbjct: 115 KELKKTFARKSKVIEEAEKMIADLTREARTNAAKAKEIQDAVYDLKAVNPNKKADTDNHT 174

Query: 566 RKD 568
            +D
Sbjct: 175 PED 177


>gi|300836960|ref|YP_003753997.1| hypothetical protein pKP048_p004 [Klebsiella pneumoniae]
 gi|299474764|gb|ADJ18588.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 413

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 83/313 (26%), Gaps = 52/313 (16%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    + T RDV  L  + L   + +          T+ D + G G  L  A      
Sbjct: 33  RKKRLSQYYTNRDVAELLISSLPSDEAS----------TIIDLSAGEGSLLMTAALKY-- 80

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G +++ E        +L           +  +    ++  K     
Sbjct: 81  --------DNAKLYGIDIDDENCR--KLDLL------QNTTSICLDATHSASFDKIKAQN 124

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   + NPPF             EH       F               +         
Sbjct: 125 STYGIVIGNPPF----------YTAEHTAYTRFLFKEWALNHKTKYYRAEVLFLMLSLKL 174

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +      IV+  +      +      +R  +        ++ L    F  T   T++  
Sbjct: 175 LDRDSCCGIVVPDTIF----SSEKYKPLREKITSLFKYIDVIELDNKAFLGTEARTHILT 230

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +SN+K+              + T    + K  R+  ++   +    Y S +     + ++
Sbjct: 231 VSNKKSISPS----------ITTRSSKKNKAIRLKKEEFIERADHQYNSFKYNNNEKTIE 280

Query: 470 YRTFGYRRIKVLR 482
                  R  + +
Sbjct: 281 TSGIKVMRGNISK 293


>gi|147921607|ref|YP_684576.1| N6 adenine-specific DNA methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110619972|emb|CAJ35250.1| predicted N6 adenine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 225

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 6/129 (4%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ D  CGTG     A            +       G + +     V  A       + D
Sbjct: 49  SVIDLGCGTGILAIGARL----LKDDAGMDSTQKVIGIDSDIRALEVAKANAESLGTDVD 104

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +++     ++  L  G RF   + NPPFG + + +        K  E+GR    
Sbjct: 105 WVHCDVRDVNNIPEIAVVLNAGSRFDTVVMNPPFGAQEKGNDRPFLD--KALEIGRVVYS 162

Query: 328 LPKISDGSM 336
           +      S 
Sbjct: 163 IHNAGSASF 171


>gi|1942356|pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942357|pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|155127|gb|AAA27506.1| methylase [Thermus aquaticus]
          Length = 421

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAPR----------GGRVLEPACAHGPFL- 54

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +              G E++P                     DL    +    
Sbjct: 55  ---RAFREAHGT-----GYRFVGVEIDP------------------KALDLPPWAEGILA 88

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                  G+ F   L NPP+G   E  K  +       +L +      K   G       
Sbjct: 89  DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK---GKYNLYGA 145

Query: 342 LANKLELPPNGGGRAAIVLS 361
              K       GG    V+ 
Sbjct: 146 FLEKAVRLLKPGGVLVFVVP 165


>gi|223862730|gb|ACN22279.1| VP2 [Rotavirus A]
          Length = 895

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 21/199 (10%)

Query: 431 WTSIRNEGKKRRI----INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
           + + RN+ KK +     ++ DQ+ Q  +   + +    S++ D +      +    P + 
Sbjct: 3   YRNKRNQNKKEKEQEVKLSKDQQEQEKETKQNEKADLKSKVFDKKE----DVITDDPQKQ 58

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI----YPYGWAESFVKESIKS 542
                K     ++ D    +         +++LK   +      Y          +  +S
Sbjct: 59  LDPKTKESGDSVKLDKQIIESKKEDSKQLVEVLKTKKEHEKEVQYEILQKTIPTFQPNES 118

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT----NLTEYENVPYLES 598
              K + +K     I      F   +P+  P+   NGE          L + +       
Sbjct: 119 ILKKMIDIKPDP--IKKSEKLFRLFEPKQLPIYRANGERELRNRWYWKLKKDDLPEGDYD 176

Query: 599 IQDYFVR---EVSPHVPDA 614
           +++YF+    +V  ++PD 
Sbjct: 177 VREYFLHLYSQVLEYMPDY 195


>gi|315222575|ref|ZP_07864464.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315188261|gb|EFU21987.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 2924

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 72/253 (28%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+        D               + +P+ G G F+   
Sbjct: 1174 SEYEAARESTLTSFYTPKTVI--------DGIYKTLSGMGFKQGNILEPSMGIGNFI--- 1222

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                   G+          +G EL+  +  +                   ++  Q   L 
Sbjct: 1223 -------GNVPDEMSKSKFYGVELDSVSGRIGKL-------------LYPESEVQVKGLE 1262

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D+          E  R           + L   +  
Sbjct: 1263 ETGFSNNFFDVAIGNVPFGEYKVNDR----------EYNRN----------NFLIHDYFF 1302

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + SS  +        +  +RR+L         + LP D F     
Sbjct: 1303 AKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFLGAIRLPNDTFKGVAG 1357

Query: 401  TNIATYLWILSNR 413
            T + + +  L  R
Sbjct: 1358 TEVTSDIIFLKKR 1370


>gi|254480651|ref|ZP_05093898.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [marine gamma proteobacterium HTCC2148]
 gi|214039234|gb|EEB79894.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [marine gamma proteobacterium HTCC2148]
          Length = 305

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 26/159 (16%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +L+ R  F           + PR  +     L+L      +   P   +T+ D  CG G 
Sbjct: 90  YLLGRAWFAGLEFSCDRRAIIPRSPI---AELILRDYQPWYYGPPP--QTILDLCCGGGC 144

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               A +H                   +L+ ++ A+          E+  R  L+  ++ 
Sbjct: 145 IGLAAAHHGQASVDLA-----------DLDADSLALAK--------ENRARLQLTDRVEI 185

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +   D    KR+   LSNPP+    +      E  H+
Sbjct: 186 YQSDLFDELPEKRYDLILSNPPYVDSADLASMPAEYHHE 224


>gi|119509399|ref|ZP_01628548.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Nodularia spumigena CCY9414]
 gi|119466013|gb|EAW46901.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Nodularia spumigena CCY9414]
          Length = 1298

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 81/287 (28%), Gaps = 67/287 (23%)

Query: 33  KVILPFTLLRRLECAL--EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS------ 84
           +VIL   LL RL      E   + +   Y  +  +  DL  F++    +F+NT       
Sbjct: 221 QVILNRFLLIRLLETFSREMPFNYLGRVYHNWQQTFPDL-PFIEDLRRAFHNTWMGYNTE 279

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
            +  S +            I   +   +         +    L     +Y          
Sbjct: 280 LFQPSWIDQLMIDVEYIQSIIVINAVPQEGI----LYTITGTLANYRSIYNY-------- 327

Query: 145 LHPDTVPDRVMSNIYEHLIRR------------FGSEVSEGAEDFMTPRDVVHLATALLL 192
               T+   ++   YE  +                 +  +    F TP  +V       L
Sbjct: 328 -DFTTLTQDILGTAYEQFLAHQLTLVGDVVKILENQQTRKREGIFYTPDYIVRRIVYQTL 386

Query: 193 DP------------------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            P                    A    S  +  T+ DP CG+G FL  A +++      +
Sbjct: 387 QPAIKPKIDASIGFLEVGEFHQAYTVASSVLDLTIIDPACGSGSFLLGAFDYILSEIKRY 446

Query: 235 -------KIPPILVPHGQ-----ELEPETHAVCVAGMLIRRLESDPR 269
                  KIP              + PE   +      +  ++ DP+
Sbjct: 447 NQACTTAKIPENFDLFSHVSVQPIINPEEQIMVKM---LHGVDRDPQ 490


>gi|116242665|sp|P14385|MTTA_THEAQ RecName: Full=Modification methylase TaqI; Short=M.TaqI; AltName:
           Full=Adenine-specific methyltransferase TaqI
 gi|149242148|pdb|2IBS|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position
 gi|149242149|pdb|2IBS|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position
 gi|149242156|pdb|2IBT|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position And An Abasic Site Analog At The
           Target Base Partner Position
 gi|149242157|pdb|2IBT|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position And An Abasic Site Analog At The
           Target Base Partner Position
 gi|157835261|pdb|2JG3|A Chain A, Mtaqi With Baz
 gi|157835264|pdb|2JG3|D Chain D, Mtaqi With Baz
 gi|160285562|pdb|2IH2|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing
           5-Methylpyrimidin- 2(1h)-One At The Target Base Partner
           Position
 gi|160285565|pdb|2IH2|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing
           5-Methylpyrimidin- 2(1h)-One At The Target Base Partner
           Position
 gi|160285571|pdb|2IH4|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
           Target Base Partner Position
 gi|160285574|pdb|2IH4|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
           Target Base Partner Position
 gi|160285579|pdb|2IH5|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Base Partner Position
 gi|160285650|pdb|2NP6|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position
 gi|160285653|pdb|2NP6|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position
 gi|160285658|pdb|2NP7|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position And Pyrrolo-Dc At The
           Target Base Partner Position
          Length = 421

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAPR----------GGRVLEPACAHGPFL- 54

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +              G E++P                     DL    +    
Sbjct: 55  ---RAFREAHGTAY-----RFVGVEIDP------------------KALDLPPWAEGILA 88

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                  G+ F   L NPP+G   E  K  +       +L +      K   G       
Sbjct: 89  DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK---GKYNLYGA 145

Query: 342 LANKLELPPNGGGRAAIVLS 361
              K       GG    V+ 
Sbjct: 146 FLEKAVRLLKPGGVLVFVVP 165


>gi|1942354|pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942355|pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942410|pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942411|pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAPR----------GGRVLEPACAHGPFL- 54

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +              G E++P                     DL    +    
Sbjct: 55  ---RAFREAHGT-----GYRFVGVEIDP------------------KALDLPPWAEGILA 88

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                  G+ F   L NPP+G   E  K  +       +L +      K   G       
Sbjct: 89  DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK---GKYNLYGA 145

Query: 342 LANKLELPPNGGGRAAIVLS 361
              K       GG    V+ 
Sbjct: 146 FLEKAVRLLKPGGVLVFVVP 165


>gi|3805982|gb|AAC69253.1| restriction enzyme BcgI alpha chain homolog [Helicobacter pylori]
          Length = 268

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 17/151 (11%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F   SE+  +   S   R+ + +     S + +   E     +    LEK   + K    
Sbjct: 101 FNQISEFLKTKNLSEEKRDLMLASFKEISKDPQRDKETSLDKAISMLLEKDSSITKQIFT 160

Query: 140 F------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F        I    +T    +M  +Y   + ++     +     +TP  V  + + LL  
Sbjct: 161 FLYEFVHKPINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELL-- 217

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                          + D   G+ GFL  +M
Sbjct: 218 --------GVNAKSFVMDLAAGSAGFLISSM 240


>gi|325268850|ref|ZP_08135475.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           multiformis DSM 16608]
 gi|324988822|gb|EGC20780.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           multiformis DSM 16608]
          Length = 489

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 52/301 (17%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    F T   +     ++          +       L D   G+G    
Sbjct: 16  FVSSNAKAGRKQYGQFFTSESIAVFMASM-------FHIDLEKDSLRLLDAGAGSGILSV 68

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             ++ + + G +     ++     E         V G+L + L S      +  I+  + 
Sbjct: 69  ALLSRIREIG-YTGSVKLVCYENDEK--------VLGVLAKNLTSVKDSHFTFEIRHENY 119

Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++   F           G+ +   + NPP+ K  +   DA+       E+    P L   
Sbjct: 120 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHM----KEVCYGAPNLY-- 173

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND---LIE 388
                LF     + L    N GG    V+  S      +G+  +  R++LL +     I 
Sbjct: 174 ----FLFWAMGIHNL----NEGGELVYVIPRS----WTSGAYFARFRKYLLSHCAITDIH 221

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI---NATDLWTSIRNEGKKRRIIN 445
            I      +F    +     I+  RK   R  K++ I   + +D     R +     ++ 
Sbjct: 222 -IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIR-ISSSDTSDFLDLRRFDVDYNTVVA 279

Query: 446 D 446
           D
Sbjct: 280 D 280


>gi|317505739|ref|ZP_07963616.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663144|gb|EFV02934.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 290

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 47/199 (23%)

Query: 206 IRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           IR   DP+ G G F          ++ +       +I   + P+GQ             +
Sbjct: 126 IRQCLDPSAGMGAFAEIFAKRVGMVDAMEKDLLTARISQSIHPYGQ-----------GNI 174

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           ++R              Q       +L    ++    SN PFG     D    ++E+  G
Sbjct: 175 IVR--------------QAPFESIGELEDKDKYDLVTSNIPFG-----DFMVYDREYSKG 215

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           +          I +   +  +            GG  A + S   L + R  +    IRR
Sbjct: 216 KDTLKRESTRAIHNYFFVKGLDCIK-------EGGLLAFITSQGVLDSPRNEA----IRR 264

Query: 380 WLLENDLIEAIVALPTDLF 398
           +L++N  + + + LP+ LF
Sbjct: 265 YLMQNSRLISALRLPSSLF 283


>gi|170679644|ref|YP_001746740.1| hypothetical protein EcSMS35_4829 [Escherichia coli SMS-3-5]
 gi|170517362|gb|ACB15540.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
          Length = 1640

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPDDALFKESPGMIR-----TLYDP 212
            I R      E +  + TP    R +V  A   L         +           T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPITDLHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|27375976|ref|NP_767505.1| hypothetical protein blr0865 [Bradyrhizobium japonicum USDA 110]
 gi|27349115|dbj|BAC46130.1| blr0865 [Bradyrhizobium japonicum USDA 110]
          Length = 1301

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 26/134 (19%)

Query: 168 SEVSEGAEDFMTPRD----VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++         TPR     +V  A    L+   A       +   + DP  G+G FL +A
Sbjct: 530 TDERRRTGSHYTPRSLTGPIVRYALQPALEQLGANATPEQILDLKVCDPAMGSGAFLVEA 589

Query: 224 MNHVA----------------------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +A                      +     ++      +G +  P    +    + +
Sbjct: 590 CRALAAKLVVAWAHWPERKPIIPADEDEELHARRLVAQRCLYGVDKNPLATDLAKLSLWL 649

Query: 262 RRLESDPRRDLSKN 275
             L  D       +
Sbjct: 650 ATLARDHEFTFLDH 663


>gi|332299075|ref|YP_004440997.1| type IIS restriction endonuclease, [Treponema brennaborense DSM
           12168]
 gi|332182178|gb|AEE17866.1| type IIS restriction endonuclease, putative [Treponema
           brennaborense DSM 12168]
          Length = 1124

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 53/215 (24%)

Query: 150 VPDRVMSNIYEHLIRRFG----SEVSEGAEDFMTPRDVVHLATALLL------------- 192
           +   ++  ++E+L+  +         + +  F TPR++V+    + L             
Sbjct: 392 LDPELLGKVFENLLGTYNPETKETARKDSGSFYTPREIVNYMVKISLEKYLQQKISSLKQ 451

Query: 193 --------------DPDDALFKESPGMIRTLYDPTCGTGGF--------LTDAMNHVADC 230
                           DD+    +  M   ++DP CG+G F        +       +D 
Sbjct: 452 EEAELLFSSDETNAPFDDSEKLTNCLMNVKVFDPACGSGAFPMGILQALVLAIKKLNSDK 511

Query: 231 GSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
              +K    L         +G +++     +      I  + E D   D + N       
Sbjct: 512 YKTNKDLYNLKLHLIENCIYGSDIQSIAIQIAKLRFFISLICEQDKTEDANNNY------ 565

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             D        +  +N   G K  +++  + +  +
Sbjct: 566 GFDPLPNLETKFVSANSLIGIKKAENQGNLFENPE 600


>gi|295980984|emb|CBJ57232.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 527

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 62/231 (26%), Gaps = 51/231 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + +             +G EL+ 
Sbjct: 171 MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIREKSE---------LYGVELDS 221

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 222 VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 268

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +                          +   +           GG+ +I+ S   +    
Sbjct: 269 NYDRP---------------------YMIHDYFVKHSLDLVRDGGQVSIISSIGTMDKRT 307

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                  + + +  +      V LP   F     T + T L      + + 
Sbjct: 308 DN-----VLQEIKSSTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKN 353


>gi|154496923|ref|ZP_02035619.1| hypothetical protein BACCAP_01216 [Bacteroides capillosus ATCC 29799]
 gi|150273881|gb|EDN00994.1| hypothetical protein BACCAP_01216 [Bacteroides capillosus ATCC 29799]
          Length = 2317

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 69/258 (26%), Gaps = 70/258 (27%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +       T   V+      +                 + +P+CG G F    
Sbjct: 993  EEYAAARASTLNAHYTSPTVIRAIYEAV--------GRMGFETGNILEPSCGVGNFF--- 1041

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278
                   G   +       +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1042 -------GMLPEEMQNSRLYGVELDSISGRIAQQLYPKADITVAGFETTDRRDF------ 1088

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+   +DK                         +   
Sbjct: 1089 -------------YDLAVGNVPFGQYQVRDK--------------------AYDKLNFSI 1115

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +   + LP D F
Sbjct: 1116 HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAF 1170

Query: 399  ---FRTNIATYLWILSNR 413
                   + + +  L  R
Sbjct: 1171 KKNAGAEVVSDIIFLQKR 1188


>gi|83718564|ref|YP_443638.1| helicase domain-containing protein [Burkholderia thailandensis E264]
 gi|83652389|gb|ABC36452.1| helicase domain protein [Burkholderia thailandensis E264]
          Length = 1063

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 32/216 (14%)

Query: 124  IARLEKAGLLYKICKNF-SGIELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDF 177
            +    +        + F   ++L  + + +     +++  +Y+   R    +++E     
Sbjct: 794  VLHEHRLDKEADTLEKFYDSVKLRAEGIDNAAGKQKIVVELYDKFFRNAFPKMTERLGIV 853

Query: 178  MTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGF---LTDAMNHVADCGSH 233
             TP +VV      +     A F ++       + DP  GTG F   L  +     +   H
Sbjct: 854  YTPVEVVDFIIHSVGHVLQAEFGQTLGSKGVHIIDPFVGTGTFVTRLLQSGLITPEELPH 913

Query: 234  HKIPPILVPHGQELEPETHAVCVAGM--LIRRL--------ESDPRRDLSKNIQQGSTLS 283
                     H  E+    + +    +  +   +        E     D  +  ++   + 
Sbjct: 914  KYKHE---IHANEIVLLAYYIACINIEAVYHGMVGGKYQPFEGICLADTFQLYEKEDLVD 970

Query: 284  KDLFTG-------KRFH--YCLSNPPFGKKWEKDKD 310
                +        K+        NPP+    +   D
Sbjct: 971  AVQASNSARRKKQKKLDIRVIFGNPPYSAGQDSAND 1006


>gi|323488444|ref|ZP_08093691.1| hypothetical protein GPDM_03850 [Planococcus donghaensis MPA1U2]
 gi|323397951|gb|EGA90750.1| hypothetical protein GPDM_03850 [Planococcus donghaensis MPA1U2]
          Length = 307

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 93/306 (30%), Gaps = 57/306 (18%)

Query: 118 FDFSSTIARLEKAGLLYKICK-NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F+F        +        +   +  E   D +         E + +     V +G ++
Sbjct: 9   FNFIDNHTTKIQQEQDNAYLESLLTTTEKWLDGLIKPEEGASKEDIRKALQLAVLKGMKE 68

Query: 177 FMTPRD---------VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            + P           +V     L +  + A+          + DP  GTG  L   MN++
Sbjct: 69  HIQPHHQMTPDALGLLVGYLVELFVKKEQAV----------ILDPAVGTGNLLLTVMNYL 118

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                       +   G EL+     +           S+    + + I      +    
Sbjct: 119 ---------DGRMTGAGVELDDLLVRLA----------SNAGNLVEQPITFYLQDALQPL 159

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                   +S+ P G   +++  A                L      S    + +   L+
Sbjct: 160 LIDPVDVVVSDLPVGYYPDEEASAT-------------YELKAEKGMSYAHHLFIEQSLK 206

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +GG    IV     LF     S   ++  +L ++  I++++ LP  LF  +  A  +
Sbjct: 207 HTADGGYLFFIV--PKALFESEYAS---QLHSFLKKHAHIQSVMELPESLFKNSAHAKGI 261

Query: 408 WILSNR 413
            +L  +
Sbjct: 262 LVLQKK 267


>gi|313890996|ref|ZP_07824617.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313120620|gb|EFR43738.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 2331

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 51/216 (23%)

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            + +P+ G G F+          G+          +G EL+  +  +              
Sbjct: 1200 ILEPSMGVGNFI----------GNIPDEMNKSKFYGVELDSVSGRIGKL----------- 1238

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 ++  Q     +  F+   F   + N PFG+    D++                  
Sbjct: 1239 --LYPESDIQIKGFEETSFSNNFFDVAIGNVPFGEYKVNDRE------------------ 1278

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
               +  + L   +   K       GG  A + SS  +        +  +RR++       
Sbjct: 1279 --YNKNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYIAARAEFL 1331

Query: 389  AIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
              + LP D F     T + + +  L  R +   R +
Sbjct: 1332 GAIRLPNDTFKGVAGTEVTSDIIFLKKRDSIRERDE 1367


>gi|291521729|emb|CBK80022.1| N-6 DNA Methylase [Coprococcus catus GD/7]
          Length = 932

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 57/230 (24%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +  +     +   +   ++E  +     E         T  + +H   + L   D     
Sbjct: 309 ASEDFDWSDISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVISPLFLEDLQKEF 365

Query: 201 ESPGMIR-------------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--- 238
           +S   I+                   T +DP CG+G FLT+    +    +         
Sbjct: 366 DSVRAIQVKRTRDKKLEEFQNKLASLTFFDPACGSGNFLTETYLSLRRLENEVIREKVGG 425

Query: 239 --------------ILVPHGQELEPETHAVCVAGM-------------LIRRLESDPRRD 271
                         I   +G E+      V    +             ++     D    
Sbjct: 426 QMTLVEVNNPIRVSIQQFYGIEINDFAVTVAKTALWIAESQMLEETKNIVYGFNDDFLPL 485

Query: 272 LSK-NIQQGST---LSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEH 316
            +  NI +G+       D+   ++  + + NPPF G +W   +   + E 
Sbjct: 486 KTYVNITEGNALRIDWNDVIPAEKLSFIMGNPPFVGARWMASEQKEDVEK 535


>gi|218296315|ref|ZP_03497071.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Thermus aquaticus Y51MC23]
 gi|218243387|gb|EED09917.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Thermus aquaticus Y51MC23]
          Length = 421

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 49/200 (24%), Gaps = 40/200 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNAAPRSLGRVETPPEVVDFMVSLAEAPR----------GGRVLEPACAHGPFL- 54

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +              G E++P                     DL    +    
Sbjct: 55  ---RAFREAHGTAY-----RFVGVEIDP------------------KALDLPPWAEGILA 88

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                  G+ F   L NPP+G   E  K  +       +L +      K   G       
Sbjct: 89  DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK---GKYNLYGA 145

Query: 342 LANKLELPPNGGGRAAIVLS 361
              K       GG    V+ 
Sbjct: 146 FLEKAVRLLKPGGVLVFVVP 165


>gi|14669432|gb|AAK71920.1|AF097471_1 endonuclease and methylase LlaGI [Lactococcus lactis]
          Length = 1570

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 74/265 (27%), Gaps = 39/265 (14%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCG 215
             +Y+   +      +E      TP +VV      + D     F +S       + DP  G
Sbjct: 847  TLYDKFFKTAFKATTERLGIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTG 906

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM-----LIRR 263
            TG F+   + ++ +     +I         +   H  E+   ++ +    +      I  
Sbjct: 907  TGTFIVRTLTYLKEQMDAGEISLSDITRKFMKELHANEIVLLSYYIAAINIEATFDEING 966

Query: 264  -------LESDPRRDLSKNIQQGSTLSKDLF----------TGKRFHYCLSNPPFGKKWE 306
                    E     D  ++ +   TL  D F                  + NPP+ K   
Sbjct: 967  EEEGYVPFEGIVLTDTFESTETEETLDDDYFGTNDERLKRQQEVPITAIIGNPPYSKGQS 1026

Query: 307  KDKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLS 361
             + D  +                K S  +         +          N  G    V +
Sbjct: 1027 NENDNNKNIEYPRLFKSIADSYVKNSKTTSVLGMYDSYVLSIRWASNRLNDKGVIGFVSN 1086

Query: 362  SSPLFNGRAGSGESEIRRWLLENDL 386
             S + +  A      +R+ L +   
Sbjct: 1087 GSYIDSQSADG----LRKSLFKEFN 1107


>gi|302333480|gb|ADL23673.1| serine protease SplE_1 [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 238

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 12/177 (6%)

Query: 440 KRRIINDDQRRQILD---IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           K  I+ +    + +      ++  NG+        T GY ++K + P   S  L    + 
Sbjct: 67  KNTILTNRHVAKDVQVGSTVLAHPNGE------NDTGGYYKVKKVIPYAGSADL---AIV 117

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
           ++E D  + K     ++  +  L   ++                K +  ++     S + 
Sbjct: 118 QVEEDSVYPKNKKFSENTEILTLTSEVKANERIAIVGYPAPYKNKHHMYQSTGTVLSING 177

Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
                +AF        PV +   E +      +       ES   YF  E+   + D
Sbjct: 178 DKLVSDAFAEGGNSGSPVFNNKNEVVAVLYSGDQIGHSKKESYSVYFTPEIKKFIAD 234


>gi|300088344|ref|YP_003758866.1| hypothetical protein Dehly_1253 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528077|gb|ADJ26545.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1241

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 43/156 (27%), Gaps = 46/156 (29%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDT---------VPDRVMSNIYEHLIRRF-- 166
            + ++      K      +    S      D          +   ++  I+E+L+  F  
Sbjct: 355 VNLNTEYGTKGKKYTTQGLLNILSSYNFTIDENDPNDQEVALDPEMLGKIFENLLASFNP 414

Query: 167 --GSEVSEGAEDFMTPRDVVHLAT-------------------------------ALLLD 193
              +   +    + TPR++V                                    ++  
Sbjct: 415 ETATTARKATGSYYTPREIVDYMVTQSLKQYYQTHLSNGDALSENLDILLAPLTDDVVNP 474

Query: 194 PDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNHV 227
            D+   KE   +     + DP  G+G F    +N +
Sbjct: 475 FDEETSKEIVRLTEQLRIVDPAVGSGAFPMGILNKL 510


>gi|225868542|ref|YP_002744490.1| type II restriction enzyme-methylase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701818|emb|CAW99252.1| type II restriction enzyme-methylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 990

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 52/395 (13%), Positives = 114/395 (28%), Gaps = 101/395 (25%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGI------ELHP---DTVPDRVMSNIYEHLIRRF 166
            D  ++S I  L    +     +    I       L P     +P  +++ +Y+  +   
Sbjct: 265 ADKKYNSGIFHLLDENIYTVDFEIIKVIFAELYYPLSPYDFSVIPPSILAKVYDVFLSER 324

Query: 167 GSEVSEGA------------EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
              +++                  TP+++  L      +       E       + D  C
Sbjct: 325 FEILNDEIKLVKKPEAIDFFGAVTTPKEIADLIVKESFEIRSEK-NEIILEEFKIADICC 383

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV----------------------------PHGQE 246
           G+G FL  A  ++ +      I  +                                G +
Sbjct: 384 GSGIFLLSAYEYLQNIIYDFSIKRLQQSLDDGVLVKEQNSYQLSFKTKKELLKSAIFGVD 443

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSK------------NIQQGSTLSKDLF------- 287
           ++     VC   +L+  L +    +L++            NI+ G++L  D F       
Sbjct: 444 IDLSAVEVCKFSLLLSCLRNISFTELAQIKQESLLPNLDNNIKFGNSLVDDKFYDYYSTS 503

Query: 288 -----------------------TGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGR 323
                                     +F   + NPP+ +  +      +E ++       
Sbjct: 504 NNSDNLLDIVGKISPFDFKEEFGKDIKFDLIVGNPPYTRSQKLAKYSPIEYQYFKSLASN 563

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +        D    + + +   L L     G    ++ +  +        ++  R  L E
Sbjct: 564 YKSAQISSLDK---YHLFVERGLHLLRENSGVLGYIIPNRFI----KEKNQNTFRHILFE 616

Query: 384 NDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEE 417
           N  ++ I+      LF   +  T L  L++ +  +
Sbjct: 617 NRCVKKIINYNEIQLFHGVSAYTCLLFLTSDRNHK 651


>gi|262118142|ref|YP_003275912.1| hypothetical protein Gbro_4906 [Gordonia bronchialis DSM 43247]
 gi|262088052|gb|ACY24019.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
          Length = 941

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 58/204 (28%), Gaps = 45/204 (22%)

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPP--------------------ILVPHGQELEPE 250
           DP CG+G FL  A   + +  +   +                      I   HG E+   
Sbjct: 392 DPACGSGNFLNVAYAKLREIETDIIVERRRRLGETGMSLDATLEQKLTIDRFHGFEINWW 451

Query: 251 THAVCVAGMLIRRLESDPR-------------RDLSKNIQQGSTLSKDLFTGKRF----H 293
              +    M +   +++                 ++ +I     L  D            
Sbjct: 452 PAKIAETAMFLVDHQANLNLAEAIGQAPERLPITITAHITHADALDLDWKAQLPAVAGQT 511

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           +   NPPF     +  D  E+        R   G   IS    +   H A  L+L     
Sbjct: 512 FVFGNPPFLGHATRTDDQAEQ-------LRRAWGTRDISRLDYVTAWH-AKTLDLLAQRP 563

Query: 354 GRAAIVLSSSPLFNGRAGSGESEI 377
           G  A V ++S +   +       I
Sbjct: 564 GAFAFVTTNSIVQGDQVPRLFGPI 587


>gi|127436|sp|P10835|MTC3_PBCVC RecName: Full=Modification methylase CviBIII; Short=M.CviBIII;
           AltName: Full=Adenine-specific methyltransferase CviBIII
 gi|93691|pir||S01615 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) CviBIII - Chlorella virus CV-NC1A
 gi|60639|emb|CAA29835.1| unnamed protein product [Paramecium bursaria Chlorella virus NC1A]
          Length = 377

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 53/229 (23%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E  + +   E       F TP+ V       L    +           ++ +P+CGTG 
Sbjct: 13  FEKTLTK---EKKSKQGIFFTPKTVR----EKLFGFTE---HFQNTPGFSILEPSCGTGE 62

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            +++ +             P+    G EL+ +   +C          S    + + +I  
Sbjct: 63  IISECVERF----------PLASIKGVELDNDMSTIC----------SKKYAEYNVDIVN 102

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              L   L+ G +F + + NPP+  +    K+            R   G         L+
Sbjct: 103 EDFL---LWKGGKFDFIVGNPPYVVRPSGYKN----------DNRIAKGRSN------LY 143

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +  L   +       G  A ++ S+        S    IR+ ++  D++
Sbjct: 144 VEFLYKCITEHLKEDGILAFIIPSTI----GNSSFYEPIRKLIITLDIL 188


>gi|210062468|ref|YP_002300485.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|134270010|emb|CAL91883.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 242

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 23/215 (10%)

Query: 71  SFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            F     Y+    S + L        GS     N  +  A F + +  + +   FS  I 
Sbjct: 26  EFFNCVSYTMIMNSLFQLERRELFYSGSNIYGFNQLAIQAGFIEKSIMLTDRHKFS--IE 83

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                    +I    + I L     P   V + I+E        +  E    F+TP  + 
Sbjct: 84  EKFYNQFDTEIIDTANLISLEIQKQPLTDVFNRIFEDC--YLTGKKGEWLGQFLTPNRLA 141

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
              +  +    D        +   + D   GTG  L   +  +     +  +  I + + 
Sbjct: 142 EAISRFVGWEKD--------IKYNIGDCCAGTGSLLFPLLREIHSKEGYEGVQKIELLY- 192

Query: 245 QELEPETHAVCVA----GMLIRRLESDPRRDLSKN 275
            E++P    + +A     M    L+         N
Sbjct: 193 NEIDPLMAQLFMAQILTNMTYHNLDFKSLHVYIGN 227


>gi|319897177|ref|YP_004135372.1| n5-glutamine methyltransferase, modifies release factors rf-1 and
           rf-2 [Haemophilus influenzae F3031]
 gi|317432681|emb|CBY81044.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Haemophilus influenzae F3031]
          Length = 292

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 23/178 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + ++      K  
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELSSIC--QKRL 148

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L  +  +    +   G           +F   +S
Sbjct: 149 ISLEIIGVDLMPDVVALAQSNAERNQLNVEFLQSCWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGG 354
           NPP+           + EH +    RF P    +++      L H+        N  G
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNG 247


>gi|188996435|ref|YP_001930686.1| hypothetical protein SYO3AOP1_0491 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931502|gb|ACD66132.1| hypothetical protein SYO3AOP1_0491 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 1178

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 112/354 (31%), Gaps = 40/354 (11%)

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             +KI  +   +  E  P+        +   ++++LE+       K      +    +F 
Sbjct: 612 KENKISELESKYFSETHPDRKREIKKELDALILKKLENSEGVFGYKADFDFRSFFPQVFI 671

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   + NPP+      D+   +   K                   L+       +E+
Sbjct: 672 EGGFDIVIGNPPYVSTKGVDEKFKKVLEKIYGFS------------DDLYNHFYFKGIEI 719

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G  A I   +      +       +R+ +L+N L++ +     + F    + T + 
Sbjct: 720 LSENGILAFISSKTFWTIQTK-----KNLRKLILDNKLLQLVDT--ANPFESAMVDTCIT 772

Query: 409 ILSNRKTEERRGKVQLINATD-----LWTSIRNEGKKR-----RIINDDQRRQILDIYVS 458
           I+   K  +   ++  I+A +         +++E  K        +  +   +I +    
Sbjct: 773 IVQKTKANDY--EILFIDARNGLDKKEVYKVKDEIYKNVANNVFFMPSEFNLKIYEKLGK 830

Query: 459 RENGKFSRMLD----YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +      R  D     +     + ++        + D T L  +      + L+  +   
Sbjct: 831 KVKELLDRWWDKISSSKNIEKYKKELEAYRNSLKVGDITLLGLITEG--GQGLATGNNGK 888

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
           ++ +L+   Q           +   IK+   K      SK  +  ++N+   K+
Sbjct: 889 YVGVLEGTKQAEKVRKERPEKLWNFIKTQNPKEFSNLKSKKDVEDYLNSLSEKE 942


>gi|163756635|ref|ZP_02163746.1| putative methylase/helicase [Kordia algicida OT-1]
 gi|161323310|gb|EDP94648.1| putative methylase/helicase [Kordia algicida OT-1]
          Length = 1579

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 35/166 (21%)

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  ++++P+ G G  L  A   +       K     +   Q  +   +         
Sbjct: 1345 GMDTADSIFEPSAGNGLLLVGANPKITHVNEIDKSRKKSLEFQQFQKITMNNGA------ 1398

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                                 S      K F   ++NPPF K    +++ ++KEH   + 
Sbjct: 1399 --------------------ESFPSEMEKAFDVVVTNPPFAK---WEENKIDKEHIIKKY 1435

Query: 322  GRFGPGLPKISDGSMLFLMHLANKLELPP-NGGGRAAIVLSSSPLF 366
                 GL +      L L H+ + L L      G+ AI++     F
Sbjct: 1436 FNNTRGLVQH-----LRLEHIMSGLALRTMKDNGKCAIIIMGHLYF 1476


>gi|75676706|ref|YP_319127.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|74421576|gb|ABA05775.1| [LSU ribosomal protein L3P]-glutamine N5-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 340

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 18/127 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +          DD L    P  +  + D   G+G     A           
Sbjct: 139 ERVIVPRSFIGEILDSHFGGDDVLCLRDPATLTRVLDLCTGSGCLAILAARAF------- 191

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P       +L  +  AV    +    L+   +        QG   +     G+R+  
Sbjct: 192 ---PNATVDATDLSADALAVAARNVREHGLDDRIQL------AQGDLFA--AVRGRRYDL 240

Query: 295 CLSNPPF 301
            +SNPP+
Sbjct: 241 IISNPPY 247


>gi|327314238|ref|YP_004329675.1| Eco57I restriction endonuclease [Prevotella denticola F0289]
 gi|326945278|gb|AEA21163.1| Eco57I restriction endonuclease [Prevotella denticola F0289]
          Length = 487

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 52/301 (17%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    F T   +     ++          +       L D   G+G    
Sbjct: 14  FVSSNAKAGRKQYGQFFTSESIAVFMASM-------FHIDLEKDSLRLLDAGAGSGILSV 66

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             ++ + + G +     ++     E         V G+L + L S      +  I+  + 
Sbjct: 67  ALLSRIREIG-YTGSVKLVCYENDEK--------VLGVLAKNLASVKDSHFTFEIRHENY 117

Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++   F           G+ +   + NPP+ K  +   DA+       E+    P L   
Sbjct: 118 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHM----KEVCYGAPNLY-- 171

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND---LIE 388
                LF     + L    N GG    V+  S      +G+  +  R++LL +     I 
Sbjct: 172 ----FLFWAMGIHNL----NEGGELVYVIPRS----WTSGAYFARFRKYLLSHCAITDIH 219

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI---NATDLWTSIRNEGKKRRIIN 445
            I      +F    +     I+  RK   R  K++ I   + +D     R +     ++ 
Sbjct: 220 -IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIR-ISSSDTSDFLDLRRFDVDYNTVVA 277

Query: 446 D 446
           D
Sbjct: 278 D 278


>gi|331265589|ref|YP_004325219.1| adenine-specific DNA methylase,putative [Streptococcus oralis Uo5]
 gi|326682261|emb|CBY99878.1| adenine-specific DNA methylase,putative [Streptococcus oralis Uo5]
          Length = 317

 Score = 39.4 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 84/264 (31%), Gaps = 44/264 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +        L     + +       ++ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIA-------LLLVLIVEELLNQEEISILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLAKKVDYL---------GIEVDDLLIDLAASMSDVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G       DA+   ++                   L 
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG---YYPDDAIASRYQVSSSQEHTYAHH-------LL 213

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+      G A  +  S  L + ++      ++ WL +   + AI+ALP D+F
Sbjct: 214 MEQGLKYLK----SDGYAIFLAPSDLLTSPQSD----LLKGWLKDEVSLAAIIALPEDIF 265

Query: 399 FRTNIATYLWILSNRKTEERRGKV 422
              + A  +++L  ++ +E    V
Sbjct: 266 STASQAKSIFVLQKKRDKEMEPFV 289


>gi|313892833|ref|ZP_07826413.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442616|gb|EFR61028.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 97

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +  K     +  G + +     +    +++  ++          +    +LSK       
Sbjct: 4   ADWKHYESNMFSGFDTDTTMLRISAMNLMLHSIKY-------PQVDYKDSLSKQNTIHDA 56

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           +  CL+NPPF       K +++KE  N EL              +LFL   
Sbjct: 57  YTICLANPPF-------KGSLDKETINDELRSI---TNNTKKTELLFLALF 97


>gi|291337005|gb|ADD96528.1| hypothetical protein [uncultured organism MedDCM-OCT-S11-C29]
          Length = 3493

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 29/136 (21%)

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
                + N PF +        ++K +    L  +             + +   + L+    
Sbjct: 1089 MDLIVGNVPFHQD-----GPIDKAYPKASLHNY-------------YFLRGIDLLKP--- 1127

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             GG    + S S + N  +       R WL E   +   + LP D F     T + T + 
Sbjct: 1128 -GGLMVAITSDSTMDNDVSKKS----REWLAERADMVGAIRLPNDAFAKNANTQVTTDIL 1182

Query: 409  ILSNRKTEERRGKVQL 424
            I   +     +     
Sbjct: 1183 IFRKKDGMPFKDGNLF 1198


>gi|161789119|ref|YP_001595675.1| SNF2 family protein [Vibrio sp. 0908]
 gi|161761405|gb|ABX77050.1| SNF2 family protein [Vibrio sp. 0908]
          Length = 2349

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 91/386 (23%), Gaps = 66/386 (17%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
            + L      R+E   E   +A  ++         D                    S   
Sbjct: 245 DLFLGPISTMRIEDFKEAIAAAAGDELDLPLQFVHDHAVLDSATDEQIQALQ----SAKD 300

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                        + S +    F     S    R      +  I            ++  
Sbjct: 301 INELEAIFNQIFQTASHDGDREFG-LKASGVKTRETINSKVKAIVDRIKAANWDTSSLTA 359

Query: 153 RVMSNIYEHLIRRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                    L+ ++            ++ TP  +              L   +      +
Sbjct: 360 EDY-----DLLVQYSGRGGLSENSQYEYYTPTYIAE--------GCWDLLGANGFDNGNV 406

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            +P+ G G F  +A  H             +     E++P + AV     ++   ++   
Sbjct: 407 LEPSAGAGVF--NATKH-----------QGVKMTATEIDPISSAV---NKILHPEDNVFN 450

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +   K   +             F   + N PFG                  + R+     
Sbjct: 451 QSFEKMAVES--------PDNHFDSVIGNIPFGSARGASAHDDPDHKSEKLIERY----- 497

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                         N+L       G   +V+  + +     G    + R  + +      
Sbjct: 498 ------------FINRLIDKVKPSGLLVLVVPVNIV--RERGKVWQKWRAKISKKAEFLG 543

Query: 390 IVALPTDLF--FRTNIATYLWILSNR 413
              LP+  F    T + T + +L   
Sbjct: 544 AHKLPSKTFGKQGTGVVTDIIVLRKH 569


>gi|300173861|ref|YP_003773027.1| adenine-specific methyltransferase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888240|emb|CBL92208.1| Adenine-specific methyltransferase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 336

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 94/317 (29%), Gaps = 43/317 (13%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           D    + ED    +    L+          +N    +     +    +  + + +I +  
Sbjct: 30  DALIEVLEDIHAGNIQHELDMPTAETTDKIQNLIT-DFDWQHMTQADLRKVLQLVILKAN 88

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +        +TP  + +L    L          +     T+ D T GTG  L    + +
Sbjct: 89  RDDKTPTNYQLTPDGIGYLLADFL------SQTANLSDGDTIIDITVGTGNLLNTINDVL 142

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  K        G + +    A+  A      ++    +  ++  Q+    +KD+ 
Sbjct: 143 IMNNVKIKRI------GIDNDDTQLALASA------VDELLNQGTTEFYQEDVISTKDVP 190

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K     +++ P G    +  D  +     G                      L  K  
Sbjct: 191 KSK---AVIADLPVGYYPIQPGDDYDTRATEGRSF---------------VHHLLIEKSL 232

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   +++ ++ L     G     + + +     ++A + LP + F     A  +
Sbjct: 233 EFVTEDGWVYLIVPANIL----NGDNAKNLLKLVANKAQLKAFLQLPNEFFKDQRAAKAI 288

Query: 408 WILSNRKTEERRGKVQL 424
            +L   K    + +V +
Sbjct: 289 LVLQK-KDVGTKTEVLM 304


>gi|124262646|ref|YP_001023116.1| adenine specific DNA methyltransferase, putative [Methylibium
            petroleiphilum PM1]
 gi|124261892|gb|ABM96881.1| adenine specific DNA methyltransferase, putative [Methylibium
            petroleiphilum PM1]
          Length = 1615

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 67/259 (25%), Gaps = 30/259 (11%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALFKESPGMIRTLYD 211
             ++ N+Y+         V+E      TP  VV      + +                L D
Sbjct: 837  EIIRNLYDTFFGSAFPRVAERLGIVYTPIPVVDFIIRSIEVALRRHFDASISDEGVQLLD 896

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRR--- 263
            P  GTG F    +          K   +   H  E+    + +    +      +     
Sbjct: 897  PFTGTGTFPVRLLQLGLIRPKALKRKYLSELHANEIVLLAYYIATINIESAFFAVAGEHL 956

Query: 264  ------------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                        L    + D+       ++        +      SNPP+  + + + D 
Sbjct: 957  PFEGIVLTDTFQLNEPSQGDVEGGFSIENSSRAKKQRQQPIRVVFSNPPYSAQQDSEGDN 1016

Query: 312  VEKEHKNGELGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLF 366
             + E       R        S   +   M+                 G  A V + S L 
Sbjct: 1017 NKNEDYPLLDERIASTYVARSKRKLFKNMYDSYVRAIRWASDRIADRGVVAFVTNGSFLK 1076

Query: 367  NGRAGSGESEIRRWLLEND 385
                      +R  L+E+ 
Sbjct: 1077 APNLDG----VRLGLVEDF 1091


>gi|313897952|ref|ZP_07831492.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312957224|gb|EFR38852.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 1747

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 55/431 (12%), Positives = 136/431 (31%), Gaps = 73/431 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +  +     F TP  V+     +L        K+      T+ + +  TG F+  
Sbjct: 198 IEEYQNAKATTLTSFYTPLIVIENMYRIL--------KKIGFQKGTVLETSIATGNFI-- 247

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       ++      +G E++  + ++                 L+K  ++    
Sbjct: 248 -------GMMQEQMFNESAIYGIEIDSVSASIAR-------QLYPGIEVLNKGFEECP-- 291

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               +    F   +SN PFG     D   + K         F   L KI +G ++     
Sbjct: 292 ----YPDDCFDLAISNVPFGTYQLHDVT-LNKFKFKIHNYFFAKALQKIRNGGLIAF--- 343

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                                 + +     G S I  ++ +       + LP+D+F +  
Sbjct: 344 ----------------------ITSADTMDGSSNIMEYINDRADFLGAIRLPSDIFMKNG 381

Query: 403 IATYLW--ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD----QRRQILDIY 456
               +   I+  R+ +++      I+   +  +   +  K  + + +       ++ + Y
Sbjct: 382 ANALVTSDIIFLRRNDDKISDPYEISTEKVDYTEHRKINKYFVEHPEMVFGNIEEVKNQY 441

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
              E     +++  ++      +VL P+  S   +K  +     +  ++ +   H  + +
Sbjct: 442 GGYEI----QVVSNKSIQDYFDEVL-PIFQSVYQEKVEIYN---ESIYQDIDIAHNRYPI 493

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLK---VKASKSFIVAFINAFGRKDPRADP 573
           +       ++Y    +  ++ ++    + K LK   V  +    +  +    +   +   
Sbjct: 494 NSYFVEDSRLYYRDDSSYYLIQTKDELKGKDLKIGHVTFNDQRDINKVKHMIQLVDKTIT 553

Query: 574 VTDVNGEWIPD 584
           V D       D
Sbjct: 554 VIDSQVNQEND 564


>gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocardia farcinica IFM 10152]
 gi|54019339|dbj|BAD60707.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 1653

 Score = 39.4 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 67/262 (25%), Gaps = 34/262 (12%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            +V++ +YE   R    + SE      TP +VV            DA  +        + D
Sbjct: 865  KVIAELYEKFFRLGFRKQSEALGIVYTPVEVVDFILHAADQASRDAFGRGLTDQDVHILD 924

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRR--- 263
            P  GTG FLT  +                  H  E+    + +    +      I     
Sbjct: 925  PFTGTGTFLTRLLQSGLITPKDLARKYAGELHANEIMLLAYYIAAVNIETTYHAILGKEA 984

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEK 307
                   E     D  +  + G +L   +F               +  + NPP+      
Sbjct: 985  AAEYSPFEGIVLADTFQITENGDSLDSMIFPQNNERITRQNATPINVVIGNPPYSVGQTS 1044

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSS 362
              D            R        S G+         +             G  A V + 
Sbjct: 1045 ANDLNANISYPTLDARIADTYAARSTGTNKNSLYDSYLRAFRWATDRIGNKGIVAFVSNG 1104

Query: 363  SPLFNGRAGSGESEIRRWLLEN 384
              +    A      IR  L + 
Sbjct: 1105 GWIDGNTADG----IRLSLADE 1122


>gi|262199721|ref|YP_003270930.1| hypothetical protein Hoch_6570 [Haliangium ochraceum DSM 14365]
 gi|262083068|gb|ACY19037.1| hypothetical protein Hoch_6570 [Haliangium ochraceum DSM 14365]
          Length = 926

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 31/168 (18%)

Query: 149 TVPDRVMSNIYEHLIRR---FG------------SEVSEGAEDFMTPRDVVHLATALLLD 193
            +    + + YEHL+ R   F                 + +  + TP  +V    A  LD
Sbjct: 207 EIAGDELGSAYEHLLARQPIFVGQAPDFLLRPAPEHARKRSGSYYTPAALVEELLAATLD 266

Query: 194 PDDALFKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           P       +P          + DP CG G  L           +      +    G+  +
Sbjct: 267 PALERAARAPDPAAAILALRVCDPACGAGNVLV--------AAARRMAARLAHARGRGDD 318

Query: 249 PETHAVCVAGML---IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           P    + +  ++   I  ++ DP       I      ++      RF 
Sbjct: 319 PAARQLALRAIVARCIHGVDIDPMAAELCKISLWLAAAEPGTGPGRFD 366


>gi|162450466|ref|YP_001612833.1| hypothetical protein sce2194 [Sorangium cellulosum 'So ce 56']
 gi|161161048|emb|CAN92353.1| hypothetical protein sce2194 [Sorangium cellulosum 'So ce 56']
          Length = 1115

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG----MIRTLYDPTCGTGGFLTDAMN 225
                    TPR +     A  L+P      E P     +   + DP  G+G FL +A  
Sbjct: 305 ERRRTSSHYTPRSLSAPIVARTLEPLLRQLGEEPASEALLRLAICDPAMGSGAFLMEACR 364

Query: 226 HVADC 230
           ++AD 
Sbjct: 365 YLADH 369


>gi|291546630|emb|CBL19738.1| N-6 DNA Methylase [Ruminococcus sp. SR1/5]
          Length = 734

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 57/230 (24%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +  +     +   +   ++E  +     E         T  + +H   + L   D     
Sbjct: 309 ASEDFDWSDISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVISPLFLEDLQKEF 365

Query: 201 ESPGMIR-------------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--- 238
           +S   I+                   T +DP CG+G FLT+    +    +         
Sbjct: 366 DSIRAIQVKRTRDKKLEEFQNKLASLTFFDPACGSGNFLTETYLSLRRLENEVIKEKVGG 425

Query: 239 --------------ILVPHGQELEPETHAVCVAGM-------------LIRRLESDPRRD 271
                         I   +G E+      V    +             ++     D    
Sbjct: 426 QMTLVEVNNPIRVSIQQFYGIEINDFAVTVAKTALWIAESQMLEETKNIVYGFNDDFLPL 485

Query: 272 LSK-NIQQGST---LSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEH 316
            +  NI +G+       D+   ++  + + NPPF G +W   +   + E 
Sbjct: 486 KTYVNITEGNALRIDWNDVIPAEKLSFIMGNPPFVGARWMASEQKEDVEK 535


>gi|119508907|ref|ZP_01628059.1| hypothetical protein N9414_21045 [Nodularia spumigena CCY9414]
 gi|119466436|gb|EAW47321.1| hypothetical protein N9414_21045 [Nodularia spumigena CCY9414]
          Length = 1622

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 22/130 (16%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + R      + +  + TP+ +        L            +  T+ +P  G+  FL 
Sbjct: 559 FLFRLAGRDRQKSASYYTPQSLTECLVKYALKELLTDKTADDILNLTICEPAMGSAAFLN 618

Query: 222 DAMNHVADCGSHHKIPPILV----------------------PHGQELEPETHAVCVAGM 259
           +A++ +A      K   +                          G +  P    +    +
Sbjct: 619 EAIDQLAAAYLERKQAELNQRIPHDDISLEMQKVKMLLADRNVFGIDKNPVAMELAEVSL 678

Query: 260 LIRRLESDPR 269
            +  +  DP+
Sbjct: 679 WLNCIYGDPK 688


>gi|311112269|ref|YP_003983491.1| hypothetical protein HMPREF0733_10599 [Rothia dentocariosa ATCC
           17931]
 gi|310943763|gb|ADP40057.1| hypothetical protein HMPREF0733_10599 [Rothia dentocariosa ATCC
           17931]
          Length = 1109

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIEL-----HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           D  S   ++    ++  + +N + ++L      P+TV D ++  IY  LI     +V   
Sbjct: 349 DNFSKEHQIMMQDVINDVQENINKLDLATFKLKPETVQD-ILQEIYMSLIP---DKVRHL 404

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----A 228
             ++ +P  +V                 +  +   L DPTCG+G FL  A+  V      
Sbjct: 405 LGEYFSPDWIVE--------HALDRVGYTGDIEARLIDPTCGSGAFLIQALKRVVSKKEY 456

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           + G+      +    G +L P +     A  ++
Sbjct: 457 NIGTEDIKNIVNNIVGFDLNPISAISAKANYIL 489


>gi|294101455|ref|YP_003553313.1| restriction modification system DNA specificity domain protein
           [Aminobacterium colombiense DSM 12261]
 gi|293616435|gb|ADE56589.1| restriction modification system DNA specificity domain protein
           [Aminobacterium colombiense DSM 12261]
          Length = 505

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 35/191 (18%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            +T+A  H++  G   K  P +      +   TH        +  L      +      +
Sbjct: 101 LITEAEKHLSGLGDLIKRFPNIK-----ITLTTHLKP-----MHILLQLAFGEYEHVKIR 150

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             ++       +++ Y  S P F  + E                          D   + 
Sbjct: 151 FESIYMPCLENEKYDYVYSLPIFSNRPEGTSQTFL-----------------TRDSDGIA 193

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             ++ N L    +      I++ +   F   A  G  ++R ++ EN  +E +  LP   F
Sbjct: 194 FENMLNHL----DENSTLDIIVPAKITF---ASLGYEKLRSYITENFYVENMYLLPEGTF 246

Query: 399 -FRTNIATYLW 408
              T I TYL+
Sbjct: 247 RPATAIKTYLF 257


>gi|282897493|ref|ZP_06305494.1| DNA modification methyltransferase-related protein [Raphidiopsis
           brookii D9]
 gi|281197588|gb|EFA72483.1| DNA modification methyltransferase-related protein [Raphidiopsis
           brookii D9]
          Length = 953

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 76/296 (25%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             V   +   ++E  + +           +  P D+  +    +L P       +  +  
Sbjct: 281 SKVEPAIFGTLFESSMGKEERHA--LGAHYTNPADIQKVVLPTILRPWQQRIDAATKLNE 338

Query: 208 -----------TLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPIL-------------- 240
                       + DP CG+G FL  A   +    ++  +KI                  
Sbjct: 339 LLALRQELINFKVLDPACGSGNFLYVAYREIKRLEANLLNKIHENFSLRSISNIGTLSLV 398

Query: 241 ---VPHGQELEPETHAVCVAGMLIRR-------------------LESD---PRRDLSKN 275
                +G +++P    +    ++I +                   LE D   P  +L +N
Sbjct: 399 KTNQFYGIDIKPFAVELAKVTLMIAKKLALDEENKLINVAQMSLPLELDQALPLDNLDQN 458

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+    L  D     +    + NPP+  K +  ++  E ++ +    R+     +     
Sbjct: 459 IRCDDALFCDWV---KADAIIGNPPYQSKNKMQQEYGE-DYVSQVRERYKEVPGR---AD 511

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                    +     + GGRA +              G + IR+       ++ IV
Sbjct: 512 YCVYWF--RRTHDELSKGGRAGLF-------------GTNTIRQNYSREGGLDYIV 552


>gi|1171062|sp|P43422|MTV1_BACST RecName: Full=Modification methylase BstVI; Short=M.BstVI; AltName:
           Full=Adenine-specific methyltransferase BstVI
 gi|142617|gb|AAA51408.1| DNA modification methyltransferase [Geobacillus stearothermophilus]
          Length = 561

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 29/222 (13%)

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP--- 242
           +   L+LD       +       L DP+ G G FL  A++ + D        P  +    
Sbjct: 18  IIVDLILD-LTGYTSDKNLENFKLLDPSFGDGVFLEAAVHRLMDSLIRRGYRPNELIDHL 76

Query: 243 ----HGQELEPETHAVCVAGM--LIRRLES---DPRRDLSKNIQQGSTL--SKDLFTGKR 291
                G EL  E +      +  ++        +    +++ I Q   L   +D     +
Sbjct: 77  GNCIRGIELRLEAYQAGRHRLQKVLEGYGFSKPEINWLINQWIIQADFLLWQEDTTEAIK 136

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + + NPP+ +     ++ ++ E       R+      I D + L++  + + LEL   
Sbjct: 137 FDFVVGNPPYVR-----QELIQDELIKKYRKRY----TTIYDRADLYVPFIQHSLELLSE 187

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             G   I+ S              ++R+++ +N  +  IV L
Sbjct: 188 Q-GTLGIICSD----RFTKNRYGKKLRKFITDNYKVRYIVDL 224


>gi|309790717|ref|ZP_07685267.1| hypothetical protein OSCT_1218 [Oscillochloris trichoides DG6]
 gi|308227248|gb|EFO80926.1| hypothetical protein OSCT_1218 [Oscillochloris trichoides DG6]
          Length = 1498

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 24/172 (13%)

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----------FHYCLSNPPFGKKWEKDKD 310
            R ++   +               ++F               F   + NPP+  +  +D+ 
Sbjct: 922  RGVDYSRQLFQRHRFLHWDLDFPEVFIDLPNKAWKPADQMGFDAVVGNPPY-DELSEDER 980

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              E E +                 + LF + +A  LE+   G    + ++  S L +  +
Sbjct: 981  GSEIEERLYFDKEPVYNEAISGRTN-LFRLFIAQSLEITTAGK-YHSFIIPMSLLGDRFS 1038

Query: 371  GSGESEIRRWLLENDLIEAIVALPTD------LFFRTNIATYLWILSNRKTE 416
                 EIRR LL       I A P        +FF   + T +++L   ++E
Sbjct: 1039 ----LEIRRKLLTKHQFVLIEAFPQKDDPNKRIFFDAKLPTCIYVLKAHQSE 1086


>gi|316932711|ref|YP_004107693.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Rhodopseudomonas palustris DX-1]
 gi|315600425|gb|ADU42960.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Rhodopseudomonas palustris DX-1]
          Length = 337

 Score = 39.4 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 18/127 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +        D  D    ++P  +  + D   G+G     A           
Sbjct: 141 ERVIVPRSFIGELLDSHFDGGDTSLIDTPEAVERVLDLCTGSGCLAILAA---------- 190

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P       +L  +  AV    +   +L+             G          +R+  
Sbjct: 191 YAFPNATVDAVDLSKDALAVATRNVAEHQLDDRVSL------YHGDLFGP--LGDERYDL 242

Query: 295 CLSNPPF 301
            +SNPP+
Sbjct: 243 IISNPPY 249


>gi|160902728|ref|YP_001568309.1| hypothetical protein Pmob_1273 [Petrotoga mobilis SJ95]
 gi|160360372|gb|ABX31986.1| hypothetical protein Pmob_1273 [Petrotoga mobilis SJ95]
          Length = 1125

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 113/406 (27%), Gaps = 122/406 (30%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL----- 162
           + +   + +D     T   +EK   L++  K+        D   + ++S  YE+      
Sbjct: 113 NFDCCYLVDDIKSRITSQTIEKVRDLFQSVKD-------EDWKKEEIISWSYEYFNEASL 165

Query: 163 -------------IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT- 208
                          +     +     F TP+ +V       L         +     + 
Sbjct: 166 KSPKGGSSKDSLMAGKDLKGKNGVISQFYTPKWIVDYLVENTLGKYYGRNGLTAHKEDSL 225

Query: 209 --------------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHGQE 246
                         + DP CG G F+    + + +   +      L+         +G +
Sbjct: 226 TAGDDKGVDLEDVKIIDPACGCGNFVIGVYDKLREMYQNKGYDDALIPKLIITKNLYGID 285

Query: 247 LEPETHAVCVAGMLIRRLES----------------DPRRDLSKNIQQGSTLSKDLFTGK 290
           ++     +    + ++ LE                 +  +      ++GS  + +    +
Sbjct: 286 IDENAVEITNLLLRLKALEDGAYERIETNIVAVPKENSLKRPEGGSRKGSLTTNEEGQNE 345

Query: 291 ---------------------------------------RFHYCLSNPPFGKKWEKDKDA 311
                                                  ++   L+NPP+      D D 
Sbjct: 346 YLKKFEKIGSLMRTEDVLSLKESGINDEPLKKALDILSLKYDVVLTNPPYLD--SSDYDF 403

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
             K + N +   F   L                K        G   ++   + +F G   
Sbjct: 404 ELKRYINEDYSEFKKNLYAC----------FIKKSCELVKMDGFVGMITPQTFMFIGS-- 451

Query: 372 SGESEIRRWLLENDLIEAIV--ALPTDLFFRTNIATYLWILSNRKT 415
               + RR++L+N  IE +V   L   +F    + T +++L   K 
Sbjct: 452 --YEKTRRFILDNFQIERLVHFGL-GGVFDNALVDTAMFVLRKSKN 494


>gi|261884795|ref|ZP_06008834.1| cpp14 [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 257

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 45/230 (19%)

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +   + F     NPPFG+K   D +                 L K S  +  F+ +   
Sbjct: 7   PIAKARGFTAGFGNPPFGQKKILDLNDT--------------TLNKTSVHNY-FIGNAIK 51

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+      G AA V+SS  L +  +      IR ++ E       V LP + F     T
Sbjct: 52  NLK----EDGIAAFVVSSYFLDSKNST-----IRNYIAEQATFLGAVRLPNNAFKKRANT 102

Query: 402 NIATYLWILSNRKTEERRGKVQLIN----ATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            + T +      K          I+     +  +   R +  ++R ++        D++ 
Sbjct: 103 EVTTDIIFFKKGKD-------LNIDKSWLESVEYYDDRFDEAEKRGMHP-------DVFN 148

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
                ++ +       G   IK  +       LD     ++  +   + L
Sbjct: 149 DFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTL 198


>gi|261417258|ref|YP_003250941.1| Eco57I restriction endonuclease [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373714|gb|ACX76459.1| Eco57I restriction endonuclease [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327556|gb|ADL26757.1| putative type II DNA modification methyltransferase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 492

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 37/270 (13%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             I +    + +    F T  +      +L                 ++ D   G+G   
Sbjct: 11  EFIAQMPKSLRKEYGQFFTSAETACFMASL-------FDLSGLNKSVSILDAGAGSGILA 63

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE----SDPRRDLSKNI 276
                 +    S  K+  +      E +P    +  + + + + +    S    + +  I
Sbjct: 64  ISIAERILKQDSSIKVEVVCY----ENDPHVLPLLKSNLDLVKKKYKNFSFKVIEDNYII 119

Query: 277 QQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            Q  + + +LF    K++   + NPP+ KK  KD           E            + 
Sbjct: 120 SQRDSFNGNLFAQECKKYDLVIGNPPY-KKISKDA---------PEALAMPVVCHGAPNL 169

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI--VA 392
             LF       L+      G+   +   S      +G+     R++L+ N  +E I    
Sbjct: 170 YFLFASMGIFNLK----ENGQMVYITPRS----WTSGAYFENFRKYLIGNTSLERIHLFE 221

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             TD+F + ++     I   +K ++   KV
Sbjct: 222 SRTDVFDKESVLQETMIFKLKKQKKHPSKV 251


>gi|291485377|dbj|BAI86452.1| hypothetical protein BSNT_04294 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 329

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 79/222 (35%), Gaps = 41/222 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLE 265
           T+ DP  GTG  L   +N +++  ++          G E++     +    A +L + LE
Sbjct: 121 TILDPALGTGNLLFTVLNQLSEKTANS--------FGIEIDDVLLKIAYAQANLLKKELE 172

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
              +  L           + LF        + + P G  +  D+ A   E K  E   F 
Sbjct: 173 LFHQDSL-----------EPLFID-PVDTVICDLPVG-YYPNDEGAEAFELKADEGHSFA 219

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                              +       GG    ++ +    + ++G    +++++  +  
Sbjct: 220 H-------------HLFIEQSVKHTKPGGYLFFMIPNHLFESSQSG----KLKQFFKDKV 262

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
            I A++ LP  +F     A  + +L  + +  +  G++ L N
Sbjct: 263 HINALLQLPKSIFKDEAHAKSILVLQKQGEYTKAPGQILLAN 304


>gi|210622251|ref|ZP_03293041.1| hypothetical protein CLOHIR_00988 [Clostridium hiranonis DSM 13275]
 gi|210154385|gb|EEA85391.1| hypothetical protein CLOHIR_00988 [Clostridium hiranonis DSM 13275]
          Length = 606

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 56/459 (12%), Positives = 125/459 (27%), Gaps = 83/459 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    + TP +        ++D               + D +CG G FL  A   +   
Sbjct: 19  RKRYGIYYTPVE----MVEYIVDNTVGKLDVLKNPCPKILDSSCGCGNFLVYAFEKLIKI 74

Query: 231 GSHHKIPPILVPHGQEL-------------------------EPETHAVCVAGMLIRRLE 265
               K   ++  +G E                          E     +    +L +  E
Sbjct: 75  -FEEKSEELVEKYGDESFKKENIPRYILKNCIYGTDTDKEAVEITKRLLTKVAILGKYEE 133

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK----------------------RFHYCLSNPPFGK 303
                DL +        +  L                          +F   + NPP+  
Sbjct: 134 PIANDDLEEEESWDEYKATYLNEDNWNTSLFKMNIYNQDGLKINWKTKFDIIIGNPPYVG 193

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   + KE+K   + ++       SD    F  +    L+      G   ++    
Sbjct: 194 H-----KLLTKEYKQFIMTKYREVYRDKSDLYFCFYKNSLELLK----DDGVIHLITPRY 244

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            L +  A      +R +L +N  IE I+  L  ++F    I+  +           R K 
Sbjct: 245 FLESISA----ELLRNYLEKNAEIEEIIDFLGAEVFDCVGISACII--------RMRKKG 292

Query: 423 QLINATDLWTSIRNEGKKRRIIND--DQRRQILDIYVSRENGKFS-------RMLDYRTF 473
             I+ T+++    ++        +  +   +I +     E+ K S        ++     
Sbjct: 293 YGISTTNIYRKKSDKYVYVNDRKNLVESVEEIKNNTKDFESIKISTSRLQSDWIIANEKD 352

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
               +++ +               +        +   + +   +I   +++ +      E
Sbjct: 353 MELYLRIEKMQGYRLYEIAESSQGVITGCDKAFILKNNDNRLKNITPKLLKDLAKSRDIE 412

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
            +V   +      +  +K        F N       + +
Sbjct: 413 KYVIPKVNHKMIYSNDIKCEDDEKYIFENCINPYKEKLE 451


>gi|82751393|ref|YP_417134.1| serine proteinase [Staphylococcus aureus RF122]
 gi|82656924|emb|CAI81359.1| serine proteinase [Staphylococcus aureus RF122]
          Length = 246

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 12/177 (6%)

Query: 440 KRRIINDDQRRQILD---IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           K  I+ +    + +      ++  NG+        T GY ++K + P   S  L    + 
Sbjct: 75  KNTILTNRHVAKDVQVGSTVLAHPNGE------NDTGGYYKVKKVIPYTGSADL---AIV 125

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
           ++E D  + K     ++  +  L   ++                K +  ++     S + 
Sbjct: 126 QVEEDSVYPKNKKFGENTEILTLTSEVKANERIAIVGYPAPYKNKHHMYQSTGTVLSING 185

Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
                +AF        PV + N E I      + +N    +S   YF  E+   + D
Sbjct: 186 DKLVSDAFAEGGNSGSPVFNSNHEVIAIAYAVDVKNDATKKSYLVYFTSEIKKFIAD 242


>gi|34540632|ref|NP_905111.1| type IIS restriction endonuclease [Porphyromonas gingivalis W83]
 gi|34396946|gb|AAQ66010.1| type IIS restriction endonuclease, putative [Porphyromonas
           gingivalis W83]
          Length = 1132

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 37/202 (18%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG---- 167
           +A   +  F +    L      Y      +  E     +   ++  ++E+L+  +     
Sbjct: 373 RATIPNNLFFAPERGLVSILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETQ 432

Query: 168 SEVSEGAEDFMTPRDVVHLATAL--------------LLDPDDALFKESPGMIR------ 207
                 +  F TPR+VV+                   L  PD  L +++           
Sbjct: 433 ETARNQSGSFYTPREVVNYMVDESLISYLGDSDLVRSLFRPDFVLQEDNKVQCEAIASKL 492

Query: 208 ---TLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP------HGQELEPETHAV 254
               + DP CG+G    G L   +  +       K   + +       +G +++     +
Sbjct: 493 KAVKILDPACGSGAFPMGLLNRMIELLERISPQEKSYDLKLFVIENCLYGSDIQSIAAQI 552

Query: 255 CVAGMLIRRLESDPRRDLSKNI 276
                 I  +    R +   N 
Sbjct: 553 TKLRFFISLICDCERDETKPNF 574


>gi|218297001|ref|ZP_03497687.1| conserved hypothetical protein [Thermus aquaticus Y51MC23]
 gi|218242704|gb|EED09240.1| conserved hypothetical protein [Thermus aquaticus Y51MC23]
          Length = 1309

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 31/129 (24%)

Query: 153 RVMSNIYEHLIRR---------------FGSEVSEGAEDFMTPRDVVHLATALLLDP--- 194
             + ++YE L+                   S   +    + TP ++V L     LDP   
Sbjct: 417 EELGSVYESLLDNAPQVVWDGGKWVLSFVRSAERKKTGSYYTPDELVALVLKEALDPVVE 476

Query: 195 -------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
                  +D   +E   +   + DP  G+G FL  A   +    +  +         +E 
Sbjct: 477 RQLKEAGEDPKAQEEALLSLKIIDPAAGSGHFLLGAARRLGRRLAQIRTGE------EEP 530

Query: 248 EPETHAVCV 256
            PE +   V
Sbjct: 531 SPEAYRQAV 539


>gi|38234327|ref|NP_940094.1| putative DNA methyltransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200590|emb|CAE50286.1| Putative DNA methyltransferase [Corynebacterium diphtheriae]
          Length = 926

 Score = 39.4 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 39/153 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------------VPHGQELE 248
             +DP CG+G FLT+   H+      +KI   L                     +G E+ 
Sbjct: 380 KFFDPACGSGNFLTETYIHLRKI--ENKILSELAGDQTQLGFSNVTLKVSLDQFYGIEIN 437

Query: 249 PETHAVCVAGMLIRRLESDPRRD-------------LSKNIQQGSTLSKDL---FTGKRF 292
               +V    + I +L+++   +              + +I  G+ L  D       ++ 
Sbjct: 438 DFAVSVASTALWIAQLQANIEAESIVTANIESLPLRDAAHIHLGNALRTDWASVLAPEQC 497

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +Y + NPPF        D  +KE +    G+ G
Sbjct: 498 NYIIGNPPFLG--YSRLDDAQKEDRKAIFGKNG 528


>gi|212224040|ref|YP_002307276.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           onnurineus NA1]
 gi|212008997|gb|ACJ16379.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           onnurineus NA1]
          Length = 331

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L                 + DP  G GG L +A                L  +G +++PE
Sbjct: 165 LHPRISRALVNLTKAREEILDPFMGAGGILMEAGLI------------GLKVYGVDIKPE 212

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGS-TLSKDLFTGKRFHYCLSNPPFGKK 304
                   +     E    +D     + G  T  ++LF  K+F    ++PP+G  
Sbjct: 213 MVEGARLNL-----EHFGVKDYEL--RLGDATKLEELFPDKKFEAVATDPPYGTS 260


>gi|153874389|ref|ZP_02002629.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152069145|gb|EDN67369.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 159

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +       + +  IYE+  + +  + ++      TP ++V           D  F    
Sbjct: 64  NIVNHHEKQKFLKVIYENFYKTYNPKGADRLGIVYTPNEIVQFMLKSTDYLLDKHFNRLL 123

Query: 204 -GMIRTLYDPTCGTGGFLTDAMNHV 227
                 + DP  GTG F+T+ + ++
Sbjct: 124 ADKNVEILDPATGTGTFITELIEYL 148


>gi|282897280|ref|ZP_06305282.1| hypothetical protein CRD_02204 [Raphidiopsis brookii D9]
 gi|281197932|gb|EFA72826.1| hypothetical protein CRD_02204 [Raphidiopsis brookii D9]
          Length = 600

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 110/388 (28%), Gaps = 56/388 (14%)

Query: 43  RLECALEPTRSAVREKYLAF-------GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           R++  LE ++S  R+ +  F          N+  +  +++          +     G   
Sbjct: 90  RIKGLLEKSQSGPRKAFEEFLTGLHKNINPNVREDEAIEMLSQHLITKPVFDALFEGYEF 149

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           T+NN  S             E       +  LEK     +  +  SGI+        +++
Sbjct: 150 TKNNPVS---QTMQRMLDTLEKESLGKEVETLEKFYKSVR--ERASGID--NAEGKQKII 202

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTC 214
             +Y+   R    ++ E      TP +VV                         + DP  
Sbjct: 203 IELYDKFFRTAFPKLVERLGIVYTPVEVVDFIIKSANFALHQEFGVGLTDEGVHILDPFT 262

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272
           GTG F+   +          K       H  E+    + +    +      L        
Sbjct: 263 GTGTFMVRLLQSGLIKPQDLKRKFSHELHCNEIVLLAYYIAAINIEESYHFLIGIQEESN 322

Query: 273 SKNIQQGS---------TLSKDLFTGKRF---------------------HYCLSNPPF- 301
           S + ++G          T +  +F  + +                        + NPP+ 
Sbjct: 323 SFSTRKGEYEPFNGIVLTDTFQMFENEGYLLENIFPENNQRVISQKQRDITVIIGNPPYS 382

Query: 302 -GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKLELPPNGGGRAA 357
            G+K E D +      K  +  R          + +      +             G   
Sbjct: 383 AGQKSENDGNKNLSYPKLDDKIRSTYAKYSSATLKNSLYDSYIRAIRWATDRIQEKGIVC 442

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLEND 385
            V + S L +  A      +R+ L+++ 
Sbjct: 443 FVTNGSFLDSNSADG----LRKCLVDDF 466


>gi|217968749|ref|YP_002353983.1| type II restriction enzyme [Thauera sp. MZ1T]
 gi|217506076|gb|ACK53087.1| type II restriction enzyme [Thauera sp. MZ1T]
          Length = 1167

 Score = 39.4 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 21/144 (14%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G++F   ++NPP+      D            L  F      +  G +        + E 
Sbjct: 486 GRKFDAVVANPPYMGSGFMD----------PVLKAFVERRYPMEKGDL--FSCFIRQGEQ 533

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA--TY 406
                G  A V     +F     S     RR  L+ ++I +++ L   +     IA  T 
Sbjct: 534 VSTPTGFIAFVTMQGWMFL----SNYESFRRDFLQRNVISSLLHLGNGVM---GIAFGTC 586

Query: 407 LWILSNRKTEERRGKVQLINATDL 430
             +      +    K   ++A+ L
Sbjct: 587 SAVFQRSPIKAFAAKYIQVDASQL 610


>gi|321312484|ref|YP_004204771.1| putative nucleic acid methyltransferase [Bacillus subtilis BSn5]
 gi|320018758|gb|ADV93744.1| putative nucleic acid methyltransferase [Bacillus subtilis BSn5]
          Length = 329

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 79/222 (35%), Gaps = 41/222 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLE 265
           ++ DP  GTG  L   +N +++  ++          G E++     +    A +L + LE
Sbjct: 121 SILDPALGTGNLLFTVLNQLSEKTANS--------FGIEIDDVLLKIAYAQANLLKKELE 172

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
              +  L           + LF        + + P G  +  D+ A   E K  E   F 
Sbjct: 173 LFHQDSL-----------EPLFID-PVDTVICDLPVG-YYPNDEGAEAFELKADEGHSFA 219

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                              +       GG    ++ +    + ++G    +++++  +  
Sbjct: 220 H-------------HLFIEQSVKHTKPGGYLFFMIPNHLFESSQSG----KLKQFFKDKV 262

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLIN 426
            I A++ LP  +F     A  + +L  + +  +  G++ L N
Sbjct: 263 HINALLQLPKSIFKDEAHAKSILVLQKQGEYTKAPGQILLAN 304


>gi|195113407|ref|XP_002001259.1| GI10687 [Drosophila mojavensis]
 gi|193917853|gb|EDW16720.1| GI10687 [Drosophila mojavensis]
          Length = 491

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 83/307 (27%), Gaps = 29/307 (9%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              F K      +   E       + + +  +E+Y   FS   +   E  +    +    
Sbjct: 78  FPEFHKQLQNHVHLHQEALKEFFKANSFKITVETYNKHFSQ--REKVEKIETMDYLPIEG 135

Query: 129 KAGLLYKICK----NFSGIELH--PDTVPDRVMSNI----YEHLIRRFGSEVSEGAEDFM 178
              L     +     F G++    P    D +   +      HLI++   +  +   +  
Sbjct: 136 AVNLKNPQVEWWYLEFWGLDPTAVPAEPEDILFGRMLVHGQRHLIKQLSLKQRKFIGNTS 195

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
               +  L     L  D             ++DP  GTG  L  A               
Sbjct: 196 MDAQLSLLMANQALVRD----------GDLVFDPFVGTGSLLVSAAKFGGYVLGADIDFM 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           ++    +              +   L+     +   ++      +        F   +++
Sbjct: 246 MVHARCRPSRITQKVRDKDESIRANLQQYGCANRYMDVLVADFSNPLWHRRITFDSIITD 305

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE----LPPNGGG 354
           PP+G +   +K   +   K+          P  S  +   L HL   L          GG
Sbjct: 306 PPYGIREATEKVETKVNPKDNTRTADMAHYPSTSHYA---LHHLYADLLEFGATHLKLGG 362

Query: 355 RAAIVLS 361
           R    L 
Sbjct: 363 RLVCWLP 369


>gi|295398609|ref|ZP_06808640.1| O-methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294973149|gb|EFG48945.1| O-methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 252

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 65/207 (31%), Gaps = 27/207 (13%)

Query: 206 IRTLYDPTCGTGG--FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           ++ + D   G G    L  A           K       HG E++P+     VA M  R 
Sbjct: 49  VKQVIDFCSGNGVIPLLLSA-----------KTSDKTQIHGIEIQPQ-----VADMAKRS 92

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE--- 320
           +  +   D     Q      +D F          NPP+ KK+++ K  +           
Sbjct: 93  MAHNDLADKITVHQMDLKSVRDHFKKDSVDVVTCNPPYFKKYDESKVNLLDAKTLARHEV 152

Query: 321 ----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                  F      + +   L+++H   +L      G +  + L        + G     
Sbjct: 153 AMTAKDIFQQAQFVLRNRGKLYIVHRPERLSELIVLGNQYHLTLKRLQFIYPKPGKEAKT 212

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNI 403
           I    +++   + +  LP   F+   +
Sbjct: 213 ILLEFMKDGHDKGLRVLPP--FYTQTL 237


>gi|229844231|ref|ZP_04464372.1| HemK [Haemophilus influenzae 6P18H1]
 gi|229813225|gb|EEP48913.1| HemK [Haemophilus influenzae 6P18H1]
          Length = 292

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 23/178 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L     +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSNAERNQLNVQFLQSRWFDNITG-----------QFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGG 354
           NPP+           + EH +    RF P    +++      L H+        N  G
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNG 247


>gi|29828544|ref|NP_823178.1| hypothetical protein SAV_2002 [Streptomyces avermitilis MA-4680]
 gi|29605648|dbj|BAC69713.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 304

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI--DKIFIDEKDKEIGRVGY 633
           G + PDT   + E  P    + +  +REV   VPDA++  +  F    D     VGY
Sbjct: 189 GGYAPDTRAADAELAP---RVTEELLREVLAEVPDAWLADEPGFDTPDDVRAAYVGY 242


>gi|306836838|ref|ZP_07469796.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
 gi|304567299|gb|EFM42906.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
          Length = 1397

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-- 100
           R+   +E     +R+++  F     +  +    A  +    S++ ++         N   
Sbjct: 497 RITALVENADEDLRQEFDEFVEGLRNNLNDGISADDAISMLSQHLITAPVFNALFENHDF 556

Query: 101 --ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              + +A   +   A     +  +    LEK     +        E+   +   +V+  +
Sbjct: 557 ITHNPVAQVMEKMVAALSKANLDTETESLEKFYESVR----IRASEVTSASGKQQVIKEL 612

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTG 217
           YE   R+   + +E      TP ++V        +     F +       ++ DP  GT 
Sbjct: 613 YERFFRKAFKKQAEALGIVYTPVEIVDFILRAADEVSRKHFGKGLSDESVSILDPFAGTS 672

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            F+   +          K   +   +  EL      +
Sbjct: 673 TFMVRLL-----QSGLIKPEDLARKYANELFATEIML 704


>gi|319955886|ref|YP_004167149.1| type II restriction-modification enzyme, r and m protein
           [Nitratifractor salsuginis DSM 16511]
 gi|319418290|gb|ADV45400.1| type II restriction-modification enzyme, R and M protein
           [Nitratifractor salsuginis DSM 16511]
          Length = 1250

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 30/184 (16%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPP 350
           F   L+NPP+          +E E+K         GL K         + HL     +  
Sbjct: 819 FDAILANPPY---------ILEDENKKVFE-----GLHKTECYQGKTDIWHLFACRAVDL 864

Query: 351 -NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNIATYLW 408
               G  + +  +  L +  A    S++RR + +N  I  I+    ++ F   +  T ++
Sbjct: 865 IRDDGYISFIAKNQWLESSAA----SKMRRKIYDNTEILNIIDFGPNMVFEEASQQTMIF 920

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ-------RRQILDIYVSREN 461
           +L   K E  + ++  I  T      R        +  D         ++I  ++   EN
Sbjct: 921 LLQKHKVE--KHQIHFIKFTKSLPLERIASILNEGLPQDHQGEVAYGIKEIPRVFNENEN 978

Query: 462 GKFS 465
            KFS
Sbjct: 979 LKFS 982


>gi|300928442|ref|ZP_07143974.1| conserved domain protein [Escherichia coli MS 187-1]
 gi|300463559|gb|EFK27052.1| conserved domain protein [Escherichia coli MS 187-1]
          Length = 983

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 162 LIRRFGSEVSEGAEDFMTP----RDVVHLATALLLDPD-----DALFKESPGMIRTLYDP 212
            I R      E +  + TP    R +V  A   L         D   K    +  T+ +P
Sbjct: 543 FIYRMAGRDREKSASYYTPEVLTRSLVKYALKELFKEQIDPISDPHAKADAILNLTVCEP 602

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPE 250
             G+  FL +A+N +A+    HK                              G +L P 
Sbjct: 603 AMGSAAFLNEAINQLAEAYLFHKQQAEGRRIPQDRYTQELQRVKMYIADNNVFGVDLNPV 662

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +    + +  +  D            
Sbjct: 663 AVELAEVSLWLNAISGDAFVPWFGYQLHC 691


>gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946756|gb|EEG27965.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1650

 Score = 39.4 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 18/200 (9%)

Query: 146  HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PG 204
            +  +   +V+ ++YE   R    + SE      TP ++V        D     F  +   
Sbjct: 845  NSASGKQQVVKDLYETFFRTAFKKQSEALGIVYTPVEIVDFILRAANDAMRKHFGRTLSD 904

Query: 205  MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                + DP  GTG F+   +          +       + +EL           ML+   
Sbjct: 905  ENVHILDPFTGTGTFIVRLLE-----SGLIRPEDTARKYAKELHATEI------MLLAYY 953

Query: 265  ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +    +++ N  +     +D      +       PF      D   V ++    +L  F
Sbjct: 954  VAAVNIEMTYNSLRAEAAKRDGKPEPEY------VPFNGIALADTFQVHEDDDTLDLKIF 1007

Query: 325  GPGLPKISDGSMLFLMHLAN 344
                 +I       +  +  
Sbjct: 1008 KENNERIERQKTAPIQAIVA 1027


>gi|326437370|gb|EGD82940.1| hypothetical protein PTSG_03573 [Salpingoeca sp. ATCC 50818]
          Length = 1612

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 205  MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               T+ DP CG+   L +A   +A  G        +  HG +  P+          +  +
Sbjct: 1399 PGATVLDPFCGSATILLEA---LAASGG------SITCHGVDYSPKAIRGATQNAKMEGV 1449

Query: 265  ESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                R        +G   +   LF    F   ++NPP+G +  +  D V
Sbjct: 1450 LDKCR------FHKGDARTLTKLFEPASFDAIITNPPWGVRSGQSTDLV 1492


>gi|325066260|ref|ZP_08124933.1| putative helicase [Actinomyces oris K20]
          Length = 1703

 Score = 39.4 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 1/108 (0%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYD 211
           RV++ +YE       S+ ++      TP  +V      +       L +        + D
Sbjct: 875 RVITELYEKFFSLAFSKTAKSLGIVYTPVQIVDFILRSVDWLARTHLGRGITDEGVHVLD 934

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           P  GTG F+   +       +          H  E+    + +  A +
Sbjct: 935 PFTGTGTFIVRLLQSGLISKADLARKYAGELHANEILLLAYYIAAANI 982


>gi|257455835|ref|ZP_05621060.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257446769|gb|EEV21787.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 956

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 48/200 (24%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCG----------------------SHHKIPPILVPHGQ 245
            ++DP CG+G FL  A   +                              +  +    G 
Sbjct: 379 KVFDPACGSGNFLIIAYKELRMLEIKVWQAKLDMMKGNSQNLSWDFGFDSVISLDNFFGI 438

Query: 246 ELEPETHAVCVAGMLI--RRLESDPRRDL-----------SKNIQQGSTLSKDL-----F 287
           E++     +    + +   ++    R              S +I  G++L  D       
Sbjct: 439 EIDDFAVQIARLSLWLAEHQMNVKFREAFGQSRATLPLKDSGHIVHGNSLRLDWQAVCPN 498

Query: 288 TGKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
            G++  Y + NPPFG    + D+   + E       +F             +    AN L
Sbjct: 499 DGEQEIYLVGNPPFGGSGNRSDEQTADMEKVFAGFKKFKFLDFVT-----AWFWKGANYL 553

Query: 347 ELPPNGGG--RAAIVLSSSP 364
           +   + G   + A+V ++S 
Sbjct: 554 KDSHDKGSQAKMALVSTNSI 573


>gi|57208451|emb|CAI42391.1| tRNA methyltransferase 11 homolog (S. cerevisiae) [Homo sapiens]
          Length = 169

 Score = 39.0 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L    +  A              +G +++  T H +  A       R
Sbjct: 15  DIVFDPFVGTGGLLIACAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 62

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 63  GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 122

Query: 315 EHKNG 319
           E   G
Sbjct: 123 EIPKG 127


>gi|39934242|ref|NP_946518.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Rhodopseudomonas palustris CGA009]
 gi|39648090|emb|CAE26610.1| possible adenine-specific methylase [Rhodopseudomonas palustris
           CGA009]
          Length = 340

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 18/127 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +        D  D    ++P  I  + D   G+G     A           
Sbjct: 144 ERVIVPRSYIGELLDSHFDGGDTSLIDAPEAIERVLDLCTGSGCLAILAA---------- 193

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P       +L  +  AV    +   RL+             G          +R+  
Sbjct: 194 YAFPNATVDAVDLSKDALAVATRNVAEHRLDDRVSL------YHGDLFGP--LGDERYDL 245

Query: 295 CLSNPPF 301
            ++NPP+
Sbjct: 246 IITNPPY 252


>gi|225713660|gb|ACO12676.1| Methyltransferase-like protein 5 [Lepeophtheirus salmonis]
          Length = 210

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 55/191 (28%), Gaps = 30/191 (15%)

Query: 160 EHLIRRFGSEVSEGA---EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           E L++   +         +   +P     +          A    +    R++ D   G 
Sbjct: 7   ESLLQDIQAFQEPKILLEQYPTSPHIASRIL-------YTAESTFNDIAGRSIADLGSGC 59

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G     A            +       G EL+P    V +    +   E +   D     
Sbjct: 60  GMLSIGAA-----------LMDAASVTGFELDPSAAQVALDN--LEGFELETPVDFVLID 106

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                L ++L   KRF   + NPPFG K  K  D +      G        L K S    
Sbjct: 107 ITQ--LFENLPEKKRFDTVIMNPPFGTKKNKGMDMIFLRTALGLASNAVYSLHKTSTRD- 163

Query: 337 LFLMHLANKLE 347
               H+  K +
Sbjct: 164 ----HIMKKSK 170


>gi|258514693|ref|YP_003190915.1| hypothetical protein Dtox_1417 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778398|gb|ACV62292.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 1557

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 26/77 (33%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      + +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 508 FIYRMAGRDRQRSASYYTPEVLTRCLVKYALKELLEGKTADEILTLTVCEPAMGSAAFLN 567

Query: 222 DAMNHVADCGSHHKIPP 238
           +A+N +A+     +   
Sbjct: 568 EAVNQLAEAYLERREEE 584


>gi|209523334|ref|ZP_03271889.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209496076|gb|EDZ96376.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 751

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 31/103 (30%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + R        +  + TP+ +        L    A       +  T+ +P  G+  FL 
Sbjct: 551 FLFRLAGRDRPKSASYYTPQTLTKCLVKYALQELLADKTADDILKLTVCEPAMGSAAFLN 610

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +A+  +A+     K   +      E            +  R +
Sbjct: 611 EAITQLAEAYLQQKEKELNQRIPHENITLEKQKVKMLLADRNV 653


>gi|77163972|ref|YP_342497.1| hypothetical protein Noc_0443 [Nitrosococcus oceani ATCC 19707]
 gi|76882286|gb|ABA56967.1| hypothetical protein Noc_0443 [Nitrosococcus oceani ATCC 19707]
          Length = 46

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKV 34
            + L   +W  A+DL       DF   
Sbjct: 5  QLSQLGKTLWAIADDLREAMNADDFRDY 32


>gi|161506837|ref|YP_001576791.1| putative Type II restriction modification system [Lactobacillus
           helveticus DPC 4571]
 gi|160347826|gb|ABX26500.1| putative Type II restriction modification system [Lactobacillus
           helveticus DPC 4571]
          Length = 1201

 Score = 39.0 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+         + + + K   L  +     + ++   LF+    N L+    
Sbjct: 810 FDIVIANPPY---IFARNQSFDDKTKQYYLSHYEVDEYQ-ANTYTLFMELGYNLLK---- 861

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G  A ++ ++ L          +IR +LL       I+     +F   N+   L  L 
Sbjct: 862 KNGTFAYIVPNNMLTIQSN----QKIRNFLLNKSGSLVIINSLDKIFADANVDNCLVFLK 917

Query: 412 NRKTEERR-GKVQLINATDLWTSIRNEGKKRRII 444
             K++E   G+++  +   + T  ++   K   I
Sbjct: 918 KEKSDEVTVGELKKGDFETIGTVDKDFFGKDNPI 951


>gi|310766660|gb|ADP11610.1| Type II restriction enzyme, methylase subunits [Erwinia sp. Ejp617]
          Length = 1223

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 35/187 (18%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+      ++          EL  F       S   +  +F+ H  
Sbjct: 497 WILAQRYDAVVANPPYMGGKGMNR----------ELKEFAKNNFPESKADLFAMFMQHAF 546

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A +   + +F     S    +R WLL+N +   +  L    F + + 
Sbjct: 547 SLLK----ENGFNAQINMQAWMFLSSYES----LRGWLLDNKMFITMAHLGARAFGQISG 598

Query: 403 --IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             + T  W++ N + E+ +  V                KK  ++           +   +
Sbjct: 599 EVVQTTAWVIKNHRNEKYQ-PVFF-----RLIGGTEAEKKNDLLLHKNI------FNRFK 646

Query: 461 NGKFSRM 467
              F ++
Sbjct: 647 QNTFKKI 653


>gi|45357712|ref|NP_987269.1| putative RNA methylase [Methanococcus maripaludis S2]
 gi|45047272|emb|CAF29705.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 350

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              + DP CGTGGFL +A                    G +++ +     +  +    L 
Sbjct: 205 GEIVLDPFCGTGGFLIEAG------------FLGCKLIGSDIDEQMVNGALLNLNTYDL- 251

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           S     + +N  +  +   +    ++    +++PP+G    K  D +E   K
Sbjct: 252 SKQVISIKENDAKNVSKYLEALKIEKIDGIVTDPPYGISTSKKGDMLEIFEK 303


>gi|88856888|ref|ZP_01131540.1| hypothetical protein A20C1_03538 [marine actinobacterium PHSC20C1]
 gi|88813856|gb|EAR23726.1| hypothetical protein A20C1_03538 [marine actinobacterium PHSC20C1]
          Length = 570

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      T + VV+    L+         +       L +P+ G G FL  A++ + +  
Sbjct: 26  KMRGAIFTKQTVVNFMLDLIGYDSADNLFDV-----KLLEPSFGGGRFLLGAVDRLLESW 80

Query: 232 SHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLES---DPRRDLSKNIQQGSTLSK 284
                P +        G EL+ E+     A +    +E+   D       +    +    
Sbjct: 81  RRQSAPRVDQLLDAIRGVELDTESFVSFKARLGNHLVEAGLPDHEIARLLDAWLVNANYL 140

Query: 285 DLFTGKRFHYCLSNPPF 301
                  F + + NPP+
Sbjct: 141 WAEFEFEFDFVIGNPPY 157


>gi|71280281|ref|YP_269848.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Colwellia psychrerythraea 34H]
 gi|71146021|gb|AAZ26494.1| modification methylase, HemK family [Colwellia psychrerythraea 34H]
          Length = 314

 Score = 39.0 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 22/160 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            Y   +  F        E  + PR  +     L+    D  F E     + + D   G+G
Sbjct: 91  AYITNLAYFAQLPFYVDERVLVPRSPIG---ELIEKHFDPYFSEQNPP-QRILDLCTGSG 146

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                  ++  D                +L  +   V    +    L        S    
Sbjct: 147 CIAIACASYFPDAEVDA----------VDLSLDALNVAEINIENHGLSEQVIPIQSDVFS 196

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                     T +++   ++NPP+  + + D    E  H+
Sbjct: 197 --------GVTAQKYDLIVTNPPYVDQEDIDSLPAEFTHE 228


>gi|325291371|ref|YP_004267552.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966772|gb|ADY57551.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 287

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 22/124 (17%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +    L++  +    +      +L D   G+G     A  ++A         
Sbjct: 98  LIPRPETEMLIEKLIELAEKRAGKDKE--YSLLDLGTGSGVMAIAAARYIA--------- 146

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +     ++  +   V     +   +E D         +QG   +      ++F + L+
Sbjct: 147 -GVKITAVDISEDALTVARQNAVKHGVEID--------FRQGDLFTP--VANQKFDWILT 195

Query: 298 NPPF 301
           NPP+
Sbjct: 196 NPPY 199


>gi|302188313|ref|ZP_07264986.1| type I restriction-modification system methyltransferase
           subunit-like protein [Pseudomonas syringae pv. syringae
           642]
          Length = 253

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 80/255 (31%), Gaps = 74/255 (29%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+++      V +    F TP +V   A  L +  D             + +P+ G G  
Sbjct: 65  ENILMTGEVTVPQDFGFFPTPPNVAKQAADLAMIGD----------GMMVLEPSAGRG-- 112

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                   A   + +     ++    EL P+ H   +          + R  +S   + G
Sbjct: 113 --------ALAVAANSAAKGVMVDMHELLPDNHKALI----------ELRLPMSGVSEPG 154

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L  D      +   L NPPF KK                                  +
Sbjct: 155 DFLQVDPKP--IYDRVLMNPPFDKKRS-------------------------------DI 181

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN--DLIEAIVALPTDL 397
            H+ + L+     GGR   ++ S   F   A + +    R ++E     IEA   LP   
Sbjct: 182 HHVVHALKFLKP-GGRLVAIMPSGVTFRDDALTRD---FRGIVEQRGGSIEA---LPEAS 234

Query: 398 F--FRTNIATYLWIL 410
           F    T + T L ++
Sbjct: 235 FKQAGTMVNTVLVVI 249


>gi|210635262|ref|ZP_03298474.1| hypothetical protein COLSTE_02405 [Collinsella stercoris DSM 13279]
 gi|210158480|gb|EEA89451.1| hypothetical protein COLSTE_02405 [Collinsella stercoris DSM 13279]
          Length = 876

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 17/157 (10%)

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           L+R L  D     ++   + +    +  + + F   ++NPP+                N 
Sbjct: 433 LMRGLSGDLFVSHTQAGIERAAELCETLS-RTFDVVVANPPYMGSSS----------FNP 481

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            + ++           +       +++       G A I+     +F G       ++R 
Sbjct: 482 FMSKWMKKNYPDFKSDL--FAAFISRIGSLCATHGEAGIMSPFVWMFIGS----YEKLRN 535

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +++   + ++V L    F    +    +   N   +
Sbjct: 536 VMIDEKTLTSLVQLEYSGFSGATVPICTFTFHNSHVD 572


>gi|317009316|gb|ADU79896.1| hypothetical protein HPIN_03300 [Helicobacter pylori India7]
          Length = 1067

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 61/501 (12%), Positives = 134/501 (26%), Gaps = 85/501 (16%)

Query: 36  LPFTLLRR---LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           L     +        L+  R  + +        ++               TS      + 
Sbjct: 211 LKMIFDKNPEIFSNFLDSLRGNIHQNIKEDEALDM--------------ITSHIITKPIF 256

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                +N+++ IA   D                 L+      K       +         
Sbjct: 257 DAVFGDNIQNPIAKALDKMVQKLATLGLEGETKDLKNLYESVKT----EALHAKSQKSQQ 312

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 313 ELIKNLYNTFFKVAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFD 372

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTG F+   ++      S   +           ++   ++ + +  +       D  
Sbjct: 373 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 432

Query: 270 RDLSKNIQQGSTLS-----------------------KDLFTGKRFHYCLSNPPF--GKK 304
               KNI    +L                        KD    +     + NPP+  G K
Sbjct: 433 LKFFKNIALTDSLDFYEEKNDKGVFAFFEDLKENKEIKDTLADQNIRVIIGNPPYSAGAK 492

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGRAAIVL 360
            E D +      +  +  +   G    S  +       L+             G    V+
Sbjct: 493 SENDNNQNLSHPELEKRVKEKYGKNSSSKNNGGTTRDTLIQSIYLASELLKDKGVLGFVV 552

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIAT 405
           + S + +  A       R+ + +      ++ L  +              +F   +    
Sbjct: 553 NGSFIDSKSANG----FRKCVAQEFSHLYVLNLRGNQRLSGEVSKKEGGKIFDSGSRATI 608

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR-----RQIL----DIY 456
            +      K+         I+  D+   ++ E K   + N +        +I       +
Sbjct: 609 AIIFFVKDKSVTNNT----IHYYDIGDYLKREAKLNLLANFENLDFVPFEKITPNEKGDW 664

Query: 457 VSRENGKFSRMLDYRTFGYRR 477
           +++ N  F +++  +    R+
Sbjct: 665 INQRNDGFEKLIPLKRDKKRQ 685


>gi|119719441|ref|YP_919936.1| SMC domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524561|gb|ABL77933.1| SMC domain protein [Thermofilum pendens Hrk 5]
          Length = 784

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 102/275 (37%), Gaps = 34/275 (12%)

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQI------LDIYVSRENGKFSRMLDYRTF- 473
           +V   N  +++++      +   I  ++ R+I      +++Y  +     SR++      
Sbjct: 298 EVSEYNLREVFSAFERVFHQLDEIYSEKYREIKGLSAQVEVYEKQLREIESRLVGLEEHV 357

Query: 474 -GYRRIKVLRPLRMSFILDK----TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             Y R +       S   D+      + RLE+++   +     +     + + + +++  
Sbjct: 358 SDYERAESEIEKIKSEYGDENKLREEIGRLESELGMLQRRSELERCVSSVRRVLAEEVAK 417

Query: 529 YGWAESFV-KESIKSNEAKTLKVKASK--SFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
            G AE +V    +       ++ K SK    +     + G+   R + +       + D 
Sbjct: 418 KGEAECYVCGNRLSEEFLDWVREKVSKSVKELKDVEESIGKLRERINVLKKK----LEDL 473

Query: 586 NLTEYENVPYLESIQDYF----VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI-----N 636
              +   + Y  + ++Y      R+      DA  ++  ++     +  +G E+     +
Sbjct: 474 REYKLTLINYEAAYEEYQRLLEERKNLQAALDA--EREELERAKSGLSVIGAELKVVRED 531

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           F R    Y     L +I    K +E ++++L  E+
Sbjct: 532 FLRLRTSYSKLPLLDEI----KKLEQEVSSLRSEL 562


>gi|319637664|ref|ZP_07992430.1| hypothetical protein HMPREF0604_00053 [Neisseria mucosa C102]
 gi|317400819|gb|EFV81474.1| hypothetical protein HMPREF0604_00053 [Neisseria mucosa C102]
          Length = 919

 Score = 39.0 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 34/137 (24%)

Query: 208 TLYDPTCGTGGFLTDAMNH-----------VADCGSHHKIPPIL---VPHGQELEPETHA 253
            ++DP CG+G FL  A              V +  S+      +     +G EL+   H 
Sbjct: 357 KIFDPACGSGNFLIIAYKELRRLEIEIFKAVKEIDSNAIFSSQIRLDQFYGIELDDFAHE 416

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQG-------------STLSKDL----FTGKRFH--- 293
           + +  + +   + +   +                     ++L +D       GKR     
Sbjct: 417 IAMLSLWLAEHQMNLAHENELGNSLPTLPLKSGGNIKAANSLREDWEAFCPRGKRAEDEV 476

Query: 294 YCLSNPPFGKKWEKDKD 310
           Y + NPPFG K  ++ +
Sbjct: 477 YIVGNPPFGGKQYRNAE 493


>gi|290890764|ref|ZP_06553831.1| hypothetical protein AWRIB429_1221 [Oenococcus oeni AWRIB429]
 gi|290479536|gb|EFD88193.1| hypothetical protein AWRIB429_1221 [Oenococcus oeni AWRIB429]
          Length = 1200

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 80/274 (29%), Gaps = 38/274 (13%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
             +Y+       SE ++      TP  +V      +    D    K        + DP  G
Sbjct: 843  TLYDKFFSTGFSETTQRLGIVFTPVQIVDFIIKSVDFALDKYFGKHLADENVHILDPFVG 902

Query: 216  TGGFLTDAMNHVADCGSHHKI-------PPILVPHGQELEPETHAVCVAGM-----LIRR 263
            TG F+ + +N++A      KI             H  E+   ++ +    +      I  
Sbjct: 903  TGTFIAETLNYLATQMKAGKITLADITRKYTQELHANEIVLLSYYIAAINIEAVFDEING 962

Query: 264  ------LESDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEK 307
                   +     D  ++ +Q  TL +DLF G                ++NPP+      
Sbjct: 963  PEKYIPFDGIVLTDTFESTEQTETLDQDLFGGNNERLKKQQEVPITAIIANPPYSVGQNN 1022

Query: 308  DKDAVEKEHKNGELGRFGPGLPK-----ISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              D  +  H +           +     +S G     +             G    V + 
Sbjct: 1023 QNDNQQNVHYSKLEAHIASTYVQNSQSGLSKGVYDSYIKAFRWATDRIGDKGVIGFVTNG 1082

Query: 363  SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            S L +G         R+ L +      I  L  +
Sbjct: 1083 SFLDSGSTDG----FRKSLYDEFNYLYIFNLRGN 1112


>gi|329963203|ref|ZP_08300940.1| hypothetical protein HMPREF9446_02533 [Bacteroides fluxus YIT
           12057]
 gi|328528899|gb|EGF55839.1| hypothetical protein HMPREF9446_02533 [Bacteroides fluxus YIT
           12057]
          Length = 1176

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 23/149 (15%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           R L   LEP         L FG  N  +E        +F+  +++++S L   N    L 
Sbjct: 256 RLLSDVLEP---------LFFGILNTKIEE-----RETFFLKNQWNISLLKEFNGIPYLN 301

Query: 102 SYIASFSDNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                  D  K    D DF  S    L +   +Y    + +  +     +   ++ +I+E
Sbjct: 302 ---GGLFDKDKIDELDIDFPYSYFKDLMEFFSIYNFTIDENDPDDSEVGIDPEMLGHIFE 358

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           +L+       ++    F TP+++V     
Sbjct: 359 NLLED-----NKDKGAFYTPKEIVQYMCR 382


>gi|255994692|ref|ZP_05427827.1| protein-(glutamine-N5) methyltransferase [Eubacterium saphenum ATCC
           49989]
 gi|255993405|gb|EEU03494.1| protein-(glutamine-N5) methyltransferase [Eubacterium saphenum ATCC
           49989]
          Length = 307

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 20/158 (12%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +  E  + PR    L     L+  + L  E+      + D   GTG       
Sbjct: 99  NFFGFDFKVDERALIPRFETELLVEKTLEKIEVLQNETREKSIKVLDLCTGTGVIGITVK 158

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + D                                  L +D  + L  +++   +   
Sbjct: 159 KTIPDVECTLSDISSDALE--------------------LAADNSKSLKADVRIVQSDLF 198

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           + F  ++F   +SNPP+ ++ + DK  +E    +  L 
Sbjct: 199 EEFADEKFDIIVSNPPYIRRADIDKLQLEVREFDPHLA 236


>gi|317181982|dbj|BAJ59766.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57]
          Length = 1033

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 97/342 (28%), Gaps = 49/342 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 280 ELIKNLYNTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFD 339

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGML--------- 260
           P  GTG F+   ++   +  S   +    + H    ++    + + +  +          
Sbjct: 340 PFTGTGSFIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQNRDGS 399

Query: 261 IRRLESDPRRD-LSKNIQQGSTLSKDLFTG-------------KRFHYCLSNPPF--GKK 304
           ++  ++    D L    ++      DLF               +     + NPP+  G K
Sbjct: 400 LKNFKNIALTDSLDFYEEKNDKGVFDLFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGSK 459

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISD---GSMLFLMHLANKLELPPNGGGRAAIVLS 361
            E D +      K  +      G    +     +   L+             G    V++
Sbjct: 460 SENDNNQNLSHPKLEKRVYEKYGKNSTAKVGATTRDTLIQSIYMASELLKDKGVLGFVVN 519

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LFFRTNIATYL 407
              + +          R+ + ++     ++ L  +              +F   + AT  
Sbjct: 520 GGFIDSKSGDG----FRKCVAKDFAHLYVLNLRGNARTSGETFQKEGGKIFDSGSRATIA 575

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            I   +    + G +   +  D         +     N D  
Sbjct: 576 IIFFVKDASVKNGAIHYYDIGDYLKREEKLNRLSNFTNLDAI 617


>gi|301105206|ref|XP_002901687.1| methylase subunit of polypeptide release factor, putative
           [Phytophthora infestans T30-4]
 gi|262100691|gb|EEY58743.1| methylase subunit of polypeptide release factor, putative
           [Phytophthora infestans T30-4]
          Length = 261

 Score = 39.0 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 15/198 (7%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F S   +   D + PR    +    L+D      +  P     + D   G+G  L  A
Sbjct: 23  KEFWSLEFKVTRDTLIPRSDSEILIETLMD------QFHPETPLRILDIGTGSGCLLLSA 76

Query: 224 M-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +       G    I    +   +E          +  L+R L++ P           S +
Sbjct: 77  LSEFPRATGVGIDISAGALAIAKENAQSNKLEERSEFLLRDLKTLPGLR--------SDV 128

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           ++D    +RF   L NPP+    E D    +       +  F  G        +      
Sbjct: 129 AEDEALFRRFDVILCNPPYIPGRELDLVGPDVLKYEPHIALFSGGAATADKCDLDPKGLR 188

Query: 343 ANKLELPPNGGGRAAIVL 360
             +L        +  +++
Sbjct: 189 MYRLLHESVDNLKICLLV 206


>gi|301170296|emb|CBW29902.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Haemophilus influenzae 10810]
          Length = 292

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 23/178 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L  +  A+  +                 N+Q   +   D  TG +F   +S
Sbjct: 151 --LEIIGVDLMSDVVALAQSN----------AERNQLNVQFLQSCWFDNITG-KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGG 354
           NPP+           + EH +    RF P    +++      L H+        N  G
Sbjct: 198 NPPYIN--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNG 247


>gi|257459304|ref|ZP_05624418.1| putative CAP-Gly domain containing protein [Campylobacter gracilis
           RM3268]
 gi|257443317|gb|EEV18446.1| putative CAP-Gly domain containing protein [Campylobacter gracilis
           RM3268]
          Length = 328

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 20/223 (8%)

Query: 410 LSNRKTEERRGKVQLINATDLWTSI---RNEGKKRRIINDDQRRQILDIYVSREN----- 461
            +  KT         I+   L T I   +NE K+   I  D R++I D   + EN     
Sbjct: 58  FNKVKTAIGDRYKFFID--KLSTPINQLKNEKKEIEAIITDGRQKIADGVAAFENAKLEQ 115

Query: 462 -----GKFSR-MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                 +++R + D +     RI     +++S +     LA+   +    K++ L     
Sbjct: 116 IAERINEYARSLCDEKGLNCERINTADLIKLSAVTTAGSLAKPTKEAIEGKIAALENEIL 175

Query: 516 LDILKPMMQQIYPYGWAESFVKESIK--SNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
              L    +Q      AE   KE+ +  + E   ++ +A          A   K   A  
Sbjct: 176 QAKLAEQEKQRRDAEIAERARKEAEERAAREKAEMEARAKAREAEILARAEREKAEAAQR 235

Query: 574 VTDVNGEWIPDTNLTEYENVPYLESIQDYFV--REVSPHVPDA 614
                 E +        E      + Q ++   REV     DA
Sbjct: 236 AEREKQEAVEQAAREAAERAKTEANKQAFYEAQREVLQKPRDA 278


>gi|187931125|ref|YP_001891109.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712034|gb|ACD30331.1| modification methylase, HemK family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 314

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 24/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +++++  F     +  E  + PR  +     L+ +       +   +  ++ D   G+G 
Sbjct: 93  YILKKAWFAGMEFDIDERVIIPRSPI---AELIRNEFSPWINDIDDVT-SVLDLCTGSGC 148

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 N   D                 ++    A+ VA        +  +  LS  ++ 
Sbjct: 149 IGIACSNVFEDANITL------------VDISDDALTVAN------HNIKKHQLSDRVRA 190

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +   D   G++F   +SNPP+  K + D    E  ++
Sbjct: 191 IKSDLFDNLHGQKFDLIVSNPPYVDKQDLDTMPHEYHYE 229


>gi|67920659|ref|ZP_00514179.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
 gi|67858143|gb|EAM53382.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
          Length = 1678

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 16/241 (6%)

Query: 111 AKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPD-----TVPDRVMSNIYEHLI 163
            +  F + D        +     L        + ++ + D             +     I
Sbjct: 495 FRGFFAEEDLYEVKKAGDDNPDALKVGYFVKLADLDKYSDEERVFNEDGTPKCHPKGTFI 554

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            R      + +  + TP  +        L            +   + +P  G+  FL +A
Sbjct: 555 YRLAGRDRQNSASYYTPESLTKCLVKYTLKELLKDKTADDILGLKICEPAMGSAAFLNEA 614

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +N +++     K   +      +L           +  R +       ++  + + S   
Sbjct: 615 INQLSEKYLDLKQDELGKRIPHDLYQLERQKVKMYLADRNVVGIDLNPIAMELAEVSIWL 674

Query: 284 KDLFTGKRFHYCL---------SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             ++T ++    +          N   G + +    ++    K  + G +      ++  
Sbjct: 675 NCIYTPEKGDAFIPWFGNQLHCGNSLIGARRQVYHKSLIPVSKKHKKGNYWYEHEPVNSY 734

Query: 335 S 335
            
Sbjct: 735 Q 735


>gi|325857461|ref|ZP_08172516.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483171|gb|EGC86151.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A]
          Length = 489

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 95/301 (31%), Gaps = 52/301 (17%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    F T   +     ++          +       L D   G+G    
Sbjct: 16  FVSSNAKADRKKYGQFFTSESIAVFMASM-------FHIDLEKDSLRLLDAGAGSGILSV 68

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             ++ + + G +     ++     E         V G+L + L S      +  I+  + 
Sbjct: 69  ALLSRIREIG-YTGSVKLVCYENDEK--------VLGVLAKNLASVKDSHFTFEIRHENY 119

Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++   F           G+ +   + NPP+ K  +   DA+       E+    P L   
Sbjct: 120 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHM----KEVCYGAPNLY-- 173

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND---LIE 388
                LF     + L    N GG    V+  S      +G+  +  R++LL +     I 
Sbjct: 174 ----FLFWAMGIHNL----NEGGELVYVIPRS----WTSGAYFARFRKYLLSHCAITDIH 221

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI---NATDLWTSIRNEGKKRRIIN 445
            I      +F    +     I+  RK   R  K++ I   + +D     R +     ++ 
Sbjct: 222 -IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIR-ISSSDTSDFLDLRRFDVDYNTVVA 279

Query: 446 D 446
           D
Sbjct: 280 D 280


>gi|298480706|ref|ZP_06998902.1| type IIS restriction endonuclease [Bacteroides sp. D22]
 gi|298273140|gb|EFI14705.1| type IIS restriction endonuclease [Bacteroides sp. D22]
          Length = 1053

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 74/272 (27%), Gaps = 64/272 (23%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
            L+  LE   +   ++  +  G   D     KV G+                    N   
Sbjct: 290 FLDDILEDLFAEGLDRNRSDQGDLYDT----KVEGFRNCRIPYL------------NGGL 333

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +     D   + F    F+S +  L +           +        V   ++  I+E+L
Sbjct: 334 FERDILDKKPSHFPASYFNSLLTMLSQYNFTIDE----NDPNDAEVGVDPEMLGRIFENL 389

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATA---------------------LLLDPDDALFKE 201
           +       ++    F TP+++V                           +   D +L  E
Sbjct: 390 LED-----NKDKGAFYTPKEIVQYMCRESLIAYLQTDMREEDKECIRQFVTTHDASLLGE 444

Query: 202 SPGMIR------TLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPILVPH 243
               I        + DP  G+G F    +            N + +  +  +       +
Sbjct: 445 LKEYIDQKLCNVKICDPAIGSGAFPMGLLRELFFCRSAIEPNIIENAANIKRHIIQNNIY 504

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           G ++E     +      +  +  +   +   N
Sbjct: 505 GVDIERGAVDIARLRFWLSLIVDEKSPEALPN 536


>gi|251792044|ref|YP_003006764.1| 23S rRNA m(2)G2445 methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533431|gb|ACS96677.1| hypothetical protein NT05HA_0239 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 718

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 71/257 (27%), Gaps = 22/257 (8%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              +   +E + K  G   Y   +  L        R      +  ++       ++ D +
Sbjct: 412 LQKNIKKIEKWAKQQGLDAYRLYDADLPEYNLAVDRYADHIVVQEYAAP-----KNIDEN 466

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               RL  A             +L       +  +N YE L        +   E F    
Sbjct: 467 KARQRLLDAVNATLNVTGIETNKLILKVRQKQKGTNQYEKL--------ANKGEYFYVNE 518

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
             V L   L    D  LF +     + L +   G      +   +      H  +     
Sbjct: 519 YGVKLWVNLTDYLDTGLFLDHRLTRKMLGEMAQGKD--FLNLFAYTGSATVHAALGKAKS 576

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
               ++           +L+  +E    + +     Q   L       ++F     +PP 
Sbjct: 577 TTTVDMSNTYLNWAEQNLLLNDIEGKQHKLI-----QADCLQWLEKCDRQFDLIFVDPPT 631

Query: 302 --GKKWEKDKDAVEKEH 316
               K  +D   V+++H
Sbjct: 632 FSNSKRMEDSWDVQRDH 648


>gi|239929415|ref|ZP_04686368.1| cholesterol oxidase [Streptomyces ghanaensis ATCC 14672]
 gi|291437741|ref|ZP_06577131.1| cholesterol oxidase [Streptomyces ghanaensis ATCC 14672]
 gi|291340636|gb|EFE67592.1| cholesterol oxidase [Streptomyces ghanaensis ATCC 14672]
          Length = 605

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 62/200 (31%), Gaps = 22/200 (11%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLES 102
            LE  R   RE   +   ++ DL++++   G   Y      L      L          +
Sbjct: 45  VLEAGRRFTRE---SLPKNSWDLKNYLWAPGLGMYGIQRIHLLGNVMVLAGAGVGGGSLN 101

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           Y  +     K  F+D  +       E+    Y   +   G+ L+P T P  V        
Sbjct: 102 YANTLYVPPKPFFDDPQWRDITDWQEELKPYYDQARRMLGVRLNPTTTPSDVH------- 154

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R     +  G    M P  V         D +DA  K      + + DP  G  G    
Sbjct: 155 LRAAAERMGVGDTFHMAPVGV------FFGDGEDADGKVRAEPGQEVPDPYFGGAGPSRR 208

Query: 223 AMNHVADC--GSHHKIPPIL 240
           A     +C  G  H     L
Sbjct: 209 ACAECGECMTGCRHGAKNTL 228


>gi|195450985|ref|XP_002072718.1| GK13537 [Drosophila willistoni]
 gi|194168803|gb|EDW83704.1| GK13537 [Drosophila willistoni]
          Length = 488

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 11/202 (5%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     L                ++DP  GTG  L
Sbjct: 181 HLIKDLSLKHRKFIGNTSMDAQLSLLMANQALV----------APGDLVFDPFVGTGSLL 230

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               +L    +              +   L+     D   ++    
Sbjct: 231 VSAAKFGGYVMGADIDYMMLHARCRPSRITQKVREKDESIRSNLKQYGCADRYMDVVVAD 290

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             +        F   +++PP+G +   +K   +   K G         P  S  ++  L 
Sbjct: 291 FSNPLWHPRVSFDSIITDPPYGIREATEKVETKVTVKEGTRNSDMAHYPSTSHYALQQLY 350

Query: 341 H-LANKLELPPNGGGRAAIVLS 361
             L +        GGR    L 
Sbjct: 351 ADLLDFASKHLRIGGRLVCWLP 372


>gi|169830597|ref|YP_001716579.1| hypothetical protein Daud_0394 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637441|gb|ACA58947.1| hypothetical protein Daud_0394 [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 1581

 Score = 39.0 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +G   F TP  +V       L P       +      + DP CG+  FL +AM  +  
Sbjct: 525 ARKGTGSFYTPLPLVRDLVYHALGPLAEGKSPAEIESLRVLDPACGSAHFLVEAMRFLGR 584


>gi|329116433|ref|ZP_08245150.1| hypothetical protein SPB_1873 [Streptococcus parauberis NCFD 2020]
 gi|326906838|gb|EGE53752.1| hypothetical protein SPB_1873 [Streptococcus parauberis NCFD 2020]
          Length = 318

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 33/168 (19%)

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +S+ P G     D  +  K     E              +    + +   L+     
Sbjct: 178 DVIISDLPVGYYPNDDIASRYKVASKEEH-------------TYAHHLLMEQSLKYLKE- 223

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG A  +  ++ L + ++      +++WL     + A+V LP  +F   N A  +++L  
Sbjct: 224 GGYAIFLAPTNILTSPQSDL----LKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGK 279

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            K +     V  I                 I + +  +  ++ + + +
Sbjct: 280 TKNQAVETFVFPI---------------TNIQSTELIQDFMNKFKNWK 312


>gi|319902462|ref|YP_004162190.1| hypothetical protein Bache_2651 [Bacteroides helcogenes P 36-108]
 gi|319417493|gb|ADV44604.1| protein of unknown function DUF450 [Bacteroides helcogenes P
           36-108]
          Length = 1000

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 88/329 (26%), Gaps = 88/329 (26%)

Query: 140 FSGIEL-HPDTVPDRVMSNIYEH-----LIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           F  I L     + D  +    E+     L     SE  +      TP  +V       + 
Sbjct: 308 FDVIPLKSISDIYDLFLGYHLEYDECGILGNVLKSEFRKSNGAVTTPEHIVQNTIDCTIA 367

Query: 194 PDDALFKESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHH------------------ 234
           P       +  ++   + DP CG+G FL    +H++     +                  
Sbjct: 368 PQYLQSLTNEQILDLKILDPACGSGVFLVSIYDHLSTQIERNIEGKQDSLPDQYLYEKVG 427

Query: 235 ---------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----- 280
                    K+      HG ++  E   V    + ++ ++     D +     GS     
Sbjct: 428 KKCLNLRGRKLIVNQCLHGVDINQECVEVAKLSLSLKIIDGYEPSDFNNAGLYGSQILHG 487

Query: 281 ---------------------------------------TLSKDLFTGKRFHYCLSNPPF 301
                                                  T   D+F    F + + NPP+
Sbjct: 488 VGVNIKCGNSLVEPDIMERVSSITENLEELAATNIFDYRTAFSDVFDSGGFDFVIGNPPY 547

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +   K+ +            R   G  +     +  +  +   +EL    G    IV  
Sbjct: 548 VEV--KNYNVALPCMSVYIKQR--YGSSRNGKIDLA-IPFIERGIELLNEYGSLGYIVQK 602

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                    G     IR+ L +  L+  +
Sbjct: 603 RFFKTEYGKG-----IRKLLSDGRLLRTV 626


>gi|291230734|ref|XP_002735320.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 4610

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 45/255 (17%)

Query: 430  LWTSIRNEGKKRRIINDDQRRQILD--IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
            L T  RN     + I D+ ++ I+D  ++V +  G+ S++             LR LR +
Sbjct: 3106 LRTRCRNFPGLIKSIPDEHKQSIVDHVVFVHQSVGEKSKLF------------LRKLRRN 3153

Query: 488  FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
              +       L+   T+  L      + L   K +   +     A   + E  +    + 
Sbjct: 3154 NYVTPKNY--LDFVSTYLGLLDEKDEYILSQCKRLESGMLKLEEASVQLNELNEKLAVQK 3211

Query: 548  L----KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
            +    K +A +  +    +       +       + E    + +   E V   +++Q   
Sbjct: 3212 VAVTEKTEACEQLLEEISSGTALATEKKGIAVAKSKEIEVQSKVIAVEKVEAEDALQ--- 3268

Query: 604  VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI-NFNRFFYQYQPSRKLQD------IDAE 656
              E  P +  A I    +D+ D        EI +F +      P + +Q       +   
Sbjct: 3269 --EALPALEAARIALQDLDKSDVT------EIRSFAK------PPKPVQTVCECIVVLRG 3314

Query: 657  LKGVE-AQIATLLEE 670
            +K V       ++ E
Sbjct: 3315 IKEVSWKSAKAMMAE 3329


>gi|317179152|dbj|BAJ56940.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F30]
          Length = 545

 Score = 39.0 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                N    + +          E      K  +N S +E          + + YE    
Sbjct: 53  NHLGKNKLNKYANKSLKGAHNHQELILRYLKRLENSSDLE---------KLGSSYEE--- 100

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
              +        + TP  +V     L   P D    ++        DP  G+G F+  A+
Sbjct: 101 ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHAL 152

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                         +   +G + +    A+              R     ++   + + K
Sbjct: 153 KL---------GFKVENIYGYDTDAFAIALTK-----------KRIKERYHLDCPNIMQK 192

Query: 285 DLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           D    K   +F    +NPP+GKK+ +++    K+  N
Sbjct: 193 DFLNLKHTPQFDCIFTNPPWGKKYNQNQKENFKQRFN 229


>gi|315640438|ref|ZP_07895548.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
 gi|315483798|gb|EFU74284.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
          Length = 1571

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 26/244 (10%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           + LE          + +         D +  + +    F ++ +++++     N    + 
Sbjct: 709 KYLENWSADVAKIAQRQISWIKNKLKDKKDPITIEFKKFISSLQHNINESIDENQAAEML 768

Query: 102 SYIASFSDNAKAIFEDFDF------SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           S         +A+FE++ F      SS +  + K        K    +E   ++V  R  
Sbjct: 769 SQHLITKPIFEALFEEYSFVNNNPVSSAMENIVKELEKAGFAKEQENLEPLYESVRMRAE 828

Query: 156 S------------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                         +Y+          +E      TP +VV      + D     F +S 
Sbjct: 829 GVEKSEDKQKIIITLYDKFFSTAFKSTTERLGIVFTPVEVVDFIVKSVDDVLKIHFGKSL 888

Query: 204 -GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-------PILVPHGQELEPETHAVC 255
                 + DP  GTG F+   ++++ +     KI             H  E+   ++ + 
Sbjct: 889 ASENVHVLDPFTGTGTFIVRTLSYLKEQMDEGKINLADITRKFTQELHANEIILLSYYIA 948

Query: 256 VAGM 259
              +
Sbjct: 949 AINI 952


>gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC
           49725]
 gi|227077180|gb|EEI15143.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC
           49725]
          Length = 1668

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL-- 100
           R+   ++     +R+++  F     +  +    A  +    S++ ++         N   
Sbjct: 754 RITALVDNADEDLRQEFDEFVEGLRNNLNDGITADDAISMLSQHLITAPVFNALFENHDF 813

Query: 101 --ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              + +A   +   A     +  +    LEK     +        E+   +   +V+  +
Sbjct: 814 ITHNPVAQVMEKMVAALSKANLDTETESLEKFYESVR----VRASEVTSASGKQQVIKEL 869

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTG 217
           YE   R+   + +E      TP ++V        +     F +       ++ DP  GT 
Sbjct: 870 YERFFRKAFKKQAEALGIVYTPVEIVDFILRAADEVSRKHFDKGLSDEGVSILDPFAGTS 929

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            F+   +          K   +   +  EL      +
Sbjct: 930 TFMVRLL-----QSGLIKPEDMARKYANELFATEIML 961


>gi|149176311|ref|ZP_01854926.1| putative DNA methylase [Planctomyces maris DSM 8797]
 gi|148844913|gb|EDL59261.1| putative DNA methylase [Planctomyces maris DSM 8797]
          Length = 1245

 Score = 39.0 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 91/305 (29%), Gaps = 61/305 (20%)

Query: 35  ILPFTLLRRLECAL-----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           +L    +R LE              +  + A  E+ L F     + +    +A +    T
Sbjct: 71  VLSAVFVRFLEDNRLIEPPRFSGPGDQLQRARDERELYFRTHPTETDREYLLAVFDELAT 130

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
              +       N    L  +++  +       F+  D +              +  +F+ 
Sbjct: 131 LPGTREVFSEHNPLRELPQWLSGDAAGELLDFFQKIDAN-----------AGGLVHDFTD 179

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-------- 194
            +        R + ++Y+ L         +      TP  V        L+P        
Sbjct: 180 ADW-----DTRFLGDLYQDL----SEAARKKYALLQTPEFVEEFILDRTLEPALDEFGLD 230

Query: 195 ----DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------IPPILV 241
               +D            + DP CG+G FL      + D     +            +  
Sbjct: 231 APPVNDPQGHPVTQAGFRMIDPACGSGHFLLGTFPRLLDRWFRQQPGGKVRDLVQKTLDS 290

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRR------DLSKNIQQGSTLSKDLFTGKR--FH 293
            HG ++ P   A+    +L++ +++            + ++  G +L      G +  F 
Sbjct: 291 IHGVDVNPYAIAIARFRLLLKAMQACDIHQLKNAPAFTLHLACGDSLLHSPLRGGQQVFD 350

Query: 294 YCLSN 298
           + L++
Sbjct: 351 FELTS 355


>gi|325913121|ref|ZP_08175491.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
 gi|325477542|gb|EGC80684.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
          Length = 1197

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+         + + + K   L  +     + ++   LF+      L+    
Sbjct: 810 FDIVIANPPY---IFARNQSFDDKTKQYYLSHYEVDEYQ-ANTYTLFMELGYKLLK---- 861

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G  A ++ ++ L          +IR +LL+      I+     +F   N+   L  L 
Sbjct: 862 KNGTFAYIIPNNMLTIQSN----QKIRDFLLKKSGSLVIINSLDKIFADANVDNCLVFLK 917

Query: 412 NRKTEE 417
             K++E
Sbjct: 918 KEKSDE 923


>gi|156564191|ref|YP_001429701.1| HsdM [Bacillus phage 0305phi8-36]
 gi|154622888|gb|ABS83768.1| HsdM [Bacillus phage 0305phi8-36]
          Length = 220

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             TL DP CGTG  +      V D       P  L+ +G E +   + + +    +  L+
Sbjct: 111 TETLLDPYCGTGRLILAVAKKVND-------PKALIYYGAEPDLLAYRIALLNARLYGLQ 163

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  S      S      F+ + F
Sbjct: 164 VRIINLNSNRYDVRSQSPNWKFSNQWF 190


>gi|300724039|ref|YP_003713354.1| N5-glutamine methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297630571|emb|CBJ91236.1| N5-glutamine methyltransferase, modifies ribosomal protein L3
           [Xenorhabdus nematophila ATCC 19061]
          Length = 311

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 26/159 (16%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LI R  F        E  + PR ++     ++ +  + L    P    T+ D   G+G 
Sbjct: 92  YLINRAWFCGHEFYVDERVLIPRSLIR---DVIENRFEGLISHQPS---TILDLCTGSGC 145

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                 +  ++                ++ P+  AV    +   +L        S     
Sbjct: 146 IAIACAHAFSEAEVDA----------VDISPDALAVAEINIENHKLSHRVIPIRSDLFHD 195

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             ++        ++    +NPP+  + +      E +H+
Sbjct: 196 IPSV--------KYDIIATNPPYVDEEDMSDFPQEYDHE 226


>gi|270293448|ref|ZP_06199656.1| adenine-specific methyltransferase [Streptococcus sp. M143]
 gi|270278110|gb|EFA23959.1| adenine-specific methyltransferase [Streptococcus sp. M143]
          Length = 317

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 85/259 (32%), Gaps = 44/259 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +        L     + +       ++ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDAIA-------LLLVLVVEELFEQEEISILEMGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLISLAKKVDYL---------GIEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G               +    R+     +  + +   
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG-----------YYPDDAIASRYQVASSQ--EHTYAH 210

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            + +   L+   +  G A  +  S  L + ++      ++ WL +   + AI+ALP D+F
Sbjct: 211 HLLMEQGLKYLKSD-GYAIFLAPSDLLTSPQSDL----LKGWLKDEVSLAAIIALPEDIF 265

Query: 399 FRTNIATYLWILSNRKTEE 417
              + A  +++L  ++ +E
Sbjct: 266 STASQAKSIFVLQKKRDKE 284


>gi|20068992|gb|AAM09644.1|AF458984_2 m6 adenine and m5 cytosine DNA methyltransferase [Acinetobacter
           lwoffii]
          Length = 952

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 86/253 (33%), Gaps = 32/253 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE     F     +    + T  D+ +   + L+D  D  F E+    +   +P  G G 
Sbjct: 22  YE---SNFDEVTKQKYGIYWTNLDLAYEIVSNLVDTFDEDFLENIT-NKKFLEPCVGMGS 77

Query: 219 FLTDAMN--HVADCGSHHKIPPILVPHGQELEPET-------HAVCVAGMLIRRLESDPR 269
           F+   +   +            I   +  +++          +   V  +    +++   
Sbjct: 78  FIFAFLRKLYEKKISKEQINKVIKNIYFCDIDENILIYFFSCYQDFVKNLFNLDIDNKLF 137

Query: 270 RD-------LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGEL 321
           +         +    +  +L K      +F   ++NPP+ G K +    +   E+++ + 
Sbjct: 138 KSNSAKGLIFNNYSDEYISLEKAFGKEVKFDILITNPPYKGLKIDAKNYSNPLEYESDKK 197

Query: 322 GRFGPGLPKISDGSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                      +  +       L+   +   +    +     ++++ ++ L +  A +  
Sbjct: 198 FYSDLSNKLTKNFELSNQGVPNLYKFFVEKIILEYTHEKSYISLLIPNTFLADKTAFN-- 255

Query: 375 SEIRRWLLENDLI 387
             +R++++EN  I
Sbjct: 256 --LRKYIIENTKI 266


>gi|21233802|ref|NP_640100.1| putative restriction methylase [Proteus vulgaris]
 gi|21202986|dbj|BAB93702.1| putative restriction methylase [Proteus vulgaris]
          Length = 558

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 27/80 (33%)

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+   HH +       G  ++          + I  L +   R    N   G  L++  
Sbjct: 413 MAEVQGHHTVIDPSAGFGDLIDSLPRNAATTAIEIHSLAAAVLRAKGFNTIHGDFLTQHP 472

Query: 287 FTGKRFHYCLSNPPFGKKWE 306
            +   F   + NPP+ +   
Sbjct: 473 ASVGLFDRVIMNPPYSEGRW 492


>gi|16273459|ref|NP_439708.1| hypothetical protein HI1559 [Haemophilus influenzae Rd KW20]
 gi|260580340|ref|ZP_05848169.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Haemophilus influenzae RdAW]
 gi|1170230|sp|P45253|HEMK_HAEIN RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.HindHemKP
 gi|1574403|gb|AAC23208.1| hemK protein (hemK) [Haemophilus influenzae Rd KW20]
 gi|260093017|gb|EEW76951.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Haemophilus influenzae RdAW]
          Length = 292

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 23/178 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L  +  A+  +     +L  +  +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMSDVVALAQSNAERNQLNVEFLQSRWFDNITG-----------KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGG 354
           NPP+           + EH +    RF P    +++      L H+        N  G
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNG 247


>gi|194337069|ref|YP_002018863.1| hypothetical protein Ppha_2038 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309546|gb|ACF44246.1| hypothetical protein Ppha_2038 [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 1241

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 56/273 (20%)

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
           G+SF + +    +   S+     L  YI    D        +   ST   L     L  I
Sbjct: 106 GHSFGHRAWLEQNPFMSSEELEGLLFYIRFAFDTLSDKIRLYSRESTYDMLPYVLDLNAI 165

Query: 137 CKNFSGIELHPDT-----VPDRVMSNIYE-HLIRRFGSEVSEG----------AEDFMTP 180
              F+ +E   D      + D +M  +YE + + +  +    G          +    TP
Sbjct: 166 IGAFNAVEEDSDVGSEIWLSDDIMGWLYESYNLSKKQAFKESGDKIEFDKVALSSQVYTP 225

Query: 181 RDVVHLAT---------------------ALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           R VV                          +   P   + +  P     L DP  G+  F
Sbjct: 226 RWVVEFLVNNSLGKLYLEMYPDSEIGRKYKIANIPATRVREPKPLTEIRLIDPATGSANF 285

Query: 220 LTDA--------MNHVADCGSHHKIPPILV------PHGQELEPETHAVCVAGMLIRRLE 265
           L  A        ++ + + G+ +    I         +G +L+     +   G+ I+ L 
Sbjct: 286 LLYAFDLFYDLYLDQIENYGAEYDEEEIGKLIIEHNLYGVDLDDRAIQIAQLGLYIKAL- 344

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
              RR+   +I++ + +S D F    F    S+
Sbjct: 345 ---RRNSRIHIERFNVVSSD-FYLPDFDVVASS 373


>gi|330878731|gb|EGH12880.1| putative DNA methylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVA 257
            ++DP CG+G FL  A  H+ D  +                     G EL      +   
Sbjct: 349 RVFDPACGSGNFLVIAYKHMRDIEAEINRRRGESNNKSEIPLTNFRGIELRDFPAEIARL 408

Query: 258 GMLI 261
            ++I
Sbjct: 409 ALII 412


>gi|325697755|gb|EGD39639.1| adenine-specific methyltransferase [Streptococcus sanguinis SK160]
 gi|332358514|gb|EGJ36338.1| adenine-specific methyltransferase [Streptococcus sanguinis SK1056]
          Length = 321

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 100/335 (29%), Gaps = 63/335 (18%)

Query: 86  YSLSTLGSTNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
           Y+L      N +N L +  Y A    N   +  D D    +   EK             +
Sbjct: 10  YTLILENVQNIQNALATNFYDALIEQNGIYLDGDTDLQEVLTNDEK----------IRAL 59

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L+ +          Y+ ++ +             TP  +  L T LL         +  
Sbjct: 60  HLNKEEW-----RRAYQFILMKAAQTEPMQVNHQFTPDTIGFLITFLLDQLAHGEEAD-- 112

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC-VAGMLIR 262
                + +   GTG      +NH     +  KI  + +     L   + ++  V      
Sbjct: 113 -----VLEIGSGTGNLAETILNH-----TQKKIDYLGLELDDLLIDLSASIAEVMNSKAH 162

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                          QG  +   +         +S+ P G   +    +           
Sbjct: 163 -------------FAQGDAVRPQVLKES--DIIISDLPVGFYPDDSIAS----------- 196

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                +    + +    + +   L+     GG A  +  +  L + +A      +++WLL
Sbjct: 197 --RYEVASTDEHTYAHHLLMEQSLKYLKP-GGYAIFLAPNDLLTSAQAP----LLKKWLL 249

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
                 A++ LP  +F  +  A  L++L  ++   
Sbjct: 250 AKAQFIAMITLPESIFSSSKHAKTLFVLRKQEANN 284


>gi|301385104|ref|ZP_07233522.1| putative DNA methylase [Pseudomonas syringae pv. tomato Max13]
 gi|302062515|ref|ZP_07254056.1| putative DNA methylase [Pseudomonas syringae pv. tomato K40]
          Length = 928

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVA 257
            ++DP CG+G FL  A  H+ D  +                     G EL      +   
Sbjct: 349 RVFDPACGSGNFLVIAYKHMRDIEAEINRRRGESNNKSEIPLTNFRGIELRDFPAEIARL 408

Query: 258 GMLI 261
            ++I
Sbjct: 409 ALII 412


>gi|217970599|ref|YP_002355833.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Thauera sp. MZ1T]
 gi|217507926|gb|ACK54937.1| modification methylase, HemK family [Thauera sp. MZ1T]
          Length = 317

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 42/140 (30%), Gaps = 21/140 (15%)

Query: 180 PRDVV--HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           PR +V       LL D   A + E P  + ++ D   G+G       +            
Sbjct: 125 PRVIVPRSFFAELLEDGF-APWVEDPEAVGSVLDMCTGSGCLAILMAHAF---------- 173

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
           P       +L  +   V    +    LE           +           G+RF   LS
Sbjct: 174 PNAHVSAVDLSEDALDVARINVADYGLEDRIELVHGDVFE--------GLEGRRFDLILS 225

Query: 298 NPPFGKKWEKDKDAVEKEHK 317
           NPP+      +    E  H+
Sbjct: 226 NPPYVTAEAMEALPPEYLHE 245


>gi|332674199|gb|AEE71016.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 530

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 92/337 (27%), Gaps = 35/337 (10%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEK 129
             +    +   T +       +    +       S SD  K I E      SS+  +L++
Sbjct: 181 IYQKWFEAVKPTIDIDWEVAKTKGILDADYYLADSLSDGDKTIIEKLQTILSSSYYKLKR 240

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYE---------HLIRR----FGSEVSEGAED 176
                     F  I         +   NIYE          ++ R      S+V E    
Sbjct: 241 GVNELGKID-FMEIGFTDGQQAHQEFWNIYERPPKVEFQAFILERRDLLVPSDVRERKGA 299

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR    +      +       +       ++D   GTG  L             +  
Sbjct: 300 FFTPR----IWVEKSQEYLAKALGQDYQEDYIIWDCAGGTGNLL------NGLTNKANCF 349

Query: 237 PPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              L  +   +  E  A     +L     + D   D  K   +      +    ++    
Sbjct: 350 LSTLDSNDVAIVKELAAANKLNLLENHVFQFDFLNDDFKKAPKSLQEILEDKEKRKKLII 409

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-----GSMLFLMHLANKLELPP 350
             NPP+ +   K K +   EHK  ++ R         +      + LF        +   
Sbjct: 410 YINPPYAEAGNKAKMSGTGEHK-AKVARNNKTHETYKNLLGSGANELFAQFFMRIYKEL- 467

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             G   A   +   L +          +   LE  ++
Sbjct: 468 -NGCIMASFSTLKYLNSSNFKKFREVFKAKFLEGFMV 503


>gi|313633072|gb|EFR99978.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 339

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 96/321 (29%), Gaps = 53/321 (16%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K + +  + SS      +        +NFS  E+        +              +  
Sbjct: 45  KEVLQKEELSSEKQTKLEEYYGSLELENFSNEEIRKGLQLALLKGM-----------KHG 93

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 MTP  +  +   LL                ++ DP CGT   LT  +N +    
Sbjct: 94  IQVNHQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL---- 143

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGK 290
              K    +   G +++    ++ + G  ++R + +   +D   N+              
Sbjct: 144 -ELKDGLEIHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVVSDLPI 202

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F                    ++  K+ EL R        S    LF+       +   
Sbjct: 203 GF-----------------YPDDENAKSFELCR----EEGHSFAHFLFIEQGMRYTKP-- 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG    +++ +          +  I++    N  IE I+ LP  LF        + IL
Sbjct: 240 --GGYLFFLVTDAMFGTSDFAKVDKFIKK----NGHIEGIIKLPETLFKSEQARKSILIL 293

Query: 411 SN-RKTEERRGKVQLINATDL 430
               +  +   +V L N + L
Sbjct: 294 RKAAENVKPPKEVLLANLSSL 314


>gi|306826341|ref|ZP_07459674.1| adenine-specific methyltransferase [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304431454|gb|EFM34437.1| adenine-specific methyltransferase [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 317

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +    + +   L+   +  G A  +  S  L + ++      ++ WL +   + AI+ALP
Sbjct: 207 TYAHHLLMEQGLKYLKSD-GYAIFLAPSDLLTSPQSDL----LKGWLKDEVSLAAIIALP 261

Query: 395 TDLFFRTNIATYLWILSNRKTEE 417
            D+F   + A  +++L  ++ +E
Sbjct: 262 EDIFSTASQAKSIFVLQKKRDKE 284


>gi|222054578|ref|YP_002536940.1| methyltransferase small [Geobacter sp. FRC-32]
 gi|221563867|gb|ACM19839.1| methyltransferase small [Geobacter sp. FRC-32]
          Length = 259

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 15/153 (9%)

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K        G + +    A+    +++   +     D    + +     K  F    F  
Sbjct: 60  KQNKSATIVGIDFQEHMAALARHNVILNGYD-----DRVSILTEDIASLKGHFPVSSFDL 114

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPP+ K              + + GR           ++   M +A  L  P     
Sbjct: 115 VVSNPPYRKPGTG--------RVSPKAGRDKARHETT--ATLADFMSMAKYLVKPAGRIC 164

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               V     LF        + +R  ++ ++ +
Sbjct: 165 FIYHVSRLVELFAEAVALKLAPLRLRMIHDNAL 197


>gi|157952720|ref|YP_001497612.1| hypothetical protein NY2A_B416R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|157953553|ref|YP_001498444.1| hypothetical protein AR158_C363R [Paramecium bursaria Chlorella
           virus AR158]
 gi|155122947|gb|ABT14815.1| hypothetical protein NY2A_B416R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|156068201|gb|ABU43908.1| hypothetical protein AR158_C363R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 372

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 37/130 (28%)

Query: 173 GAEDFMTPRDV-VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               F TPR +   L + +   P            R + DPTCG+G FL D      D  
Sbjct: 21  KRGIFFTPRSLRSILLSKITSRP------------RNILDPTCGSGEFLNDCFEKWPDS- 67

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G E   +   V                    N               +
Sbjct: 68  ---------TLTGVEFTDDIVPVARDN--------------VPNATIHHHDFMKWKQDGK 104

Query: 292 FHYCLSNPPF 301
           F   + NPPF
Sbjct: 105 FDLIVGNPPF 114


>gi|308061998|gb|ADO03886.1| hypothetical protein HPCU_03620 [Helicobacter pylori Cuz20]
          Length = 1295

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 67/488 (13%), Positives = 141/488 (28%), Gaps = 66/488 (13%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
           RL+   E       +   +  G+   +   +K        TS      +      +N+++
Sbjct: 441 RLKDIFEKNPEIFHDFLDSLRGN---IHQSIKEDEALDMITSHIITKPIFDAIFGDNIKN 497

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                S     + E           +    LY+  K    +          ++ N+Y   
Sbjct: 498 ---PISKALDKMVEKLSTLGLQGETKDLKNLYESVKT-EAMRAKSQKSQQELIKNLYNTF 553

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +    + SE      TP +VV                 +      T++DP  GTG F+ 
Sbjct: 554 FKEAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTGTGSFIA 613

Query: 222 DAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
             ++   +  S   +    + H    ++    + + +  +       D      KNI   
Sbjct: 614 RLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKNFKNIALT 673

Query: 280 STLS--------------KDLFTGKRFH---------YCLSNPPF--GKKWEKDKDAVEK 314
            +L               +DL   K              + NPP+  G K E D +    
Sbjct: 674 DSLDIYEEKNDKGVLPILEDLKENKEIKSTIEKRNIRVIIGNPPYSAGSKSENDNNQNLS 733

Query: 315 EHKNGELGRFGPGLPKISD---GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
             K  +      G    +     +   L+             G    V++ S + +  A 
Sbjct: 734 HPKLEKRVYEKYGKNSTAKVGATTRDTLIQSIYMASELLKDRGVLGFVVNGSFIDSKSAD 793

Query: 372 SGESEIRRWLLENDLIEAIVALPTD------LF-------FRTNIATYLWILSNRKTEER 418
                 R+ + +      ++ L  +       F       F +     + I+   K    
Sbjct: 794 G----FRKCVAQEFAHLYVLNLRGNARTSGETFKKEGGKIFDSGSRATIAIIFFVKDASV 849

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------DIYVSRENGKFSRMLD 469
           +     I+  D+   ++ E K  R+ +      I            ++++ N  F +++ 
Sbjct: 850 KNST--IHYYDIGDYLKREEKLNRLAHFTNLDAIAFETITPNNKGDWINQRNDAFEKLIP 907

Query: 470 YRTFGYRR 477
            +    R+
Sbjct: 908 LKRDKKRQ 915


>gi|167647339|ref|YP_001685002.1| methyltransferase small [Caulobacter sp. K31]
 gi|167349769|gb|ABZ72504.1| methyltransferase small [Caulobacter sp. K31]
          Length = 245

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + +  CG GG L  A +                  G E +P    +    + +  
Sbjct: 38  HPGERVIEAGCGVGGALLAAASRRK----------GARFVGLERDPAAADLARGNIALNG 87

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           L +D    ++ +I++G            F   +SNPPF
Sbjct: 88  L-ADRVEVVTGDIERGF----RALDLPVFDAVISNPPF 120


>gi|307284206|ref|ZP_07564374.1| hypothetical protein HMPREF9515_02281 [Enterococcus faecalis
           TX0860]
 gi|306503362|gb|EFM72612.1| hypothetical protein HMPREF9515_02281 [Enterococcus faecalis
           TX0860]
          Length = 244

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 18/129 (13%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +I+       +   +  TP+ +V     +       + +    +  T  +P  G G F
Sbjct: 3   EEIIK--SKLRVQKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAF 55

Query: 220 LTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDP 268
           L   +    +  S      ++             +G EL  +   +CV  M  +  ++  
Sbjct: 56  LLVILERKLNMVSKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYK 115

Query: 269 RRDLSKNIQ 277
            +    N +
Sbjct: 116 EQVEHHNGE 124


>gi|325144598|gb|EGC66897.1| hypothetical protein NMBM01240013_1012 [Neisseria meningitidis
           M01-240013]
          Length = 108

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/72 (9%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           +   I++   ++ +++ ++ ++I + +  ++    FS ++ Y     +   +        
Sbjct: 1   MGEKIKDGKNQKTVLSREEEQKICNTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEV 60

Query: 489 ILDKTGLARLEA 500
            +D   ++  E 
Sbjct: 61  KIDYVDISAEEF 72


>gi|313889303|ref|ZP_07822954.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122351|gb|EFR45439.1| helicase C-terminal domain protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 1555

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 42/175 (24%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +G EL+  T A+         L  +   ++              F    F   +SN PF
Sbjct: 11  LYGVELDTITGAIAK------HLHPNSHIEIKG-------FETVAFNDNSFDLVISNVPF 57

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                 D              R             +   +   K     + GG+ AI+ S
Sbjct: 58  ANIRIADN----------RYDRP-----------YMIHDYFVKKSLDLLHDGGQVAIISS 96

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           +  +           I + + E       V LP   F     T++ T +      
Sbjct: 97  TGTMDKRT-----ENILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDMLFFQKH 146


>gi|306830236|ref|ZP_07463419.1| adenine-specific methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427603|gb|EFM30700.1| adenine-specific methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 317

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +    + +   L+   +  G A  +  S  L + ++      ++ WL +   + AI+ALP
Sbjct: 207 TYAHHLLMEQGLKYLKSD-GYAIFLAPSDLLTSPQSD----LLKAWLKDEVSLTAIIALP 261

Query: 395 TDLFFRTNIATYLWILSNRKTEE 417
            D+F   + A  +++L  ++ +E
Sbjct: 262 EDIFSTASQAKSVFVLQKKRDKE 284


>gi|148225769|ref|NP_001084954.1| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Xenopus
           laevis]
 gi|82185341|sp|Q6NS23|TRM11_XENLA RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|47122811|gb|AAH70528.1| Trmt11 protein [Xenopus laevis]
          Length = 478

 Score = 38.2 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 91/289 (31%), Gaps = 50/289 (17%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR-L 127
            E   K+   +    S + L   G T      +S ++   +N  +  +       I    
Sbjct: 61  EEMARKLMKRTVCAKSVFELWGHGKTF-MEFQQSVLSYPLENMMSYLQPNSTYKIIIHSF 119

Query: 128 EKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM------- 178
            K     +  +  + +E  P    V  +   NI+ +L+  +GS+ ++   +         
Sbjct: 120 NKTLTQKEKLEKINTMEFIPFQGKVNLQNAENIF-YLLEDYGSDPNKAPNEPFEIFFGRW 178

Query: 179 ---TPRDVV--------HLATALLLDPDDALFKESP---GMIRTLYDPTCGTGGFLTDAM 224
                R+++        H      +D   +    +         ++DP  GTGG L  + 
Sbjct: 179 IADGQRELINSYSVKKRHFIGNTSMDAGLSFIMANHARVKPNDVVFDPFVGTGGLLVSSA 238

Query: 225 NHVADCGSHHKIPPILVPHGQELEPET-HAVCV---AGMLIRRLESDPRRDLSKNIQQG- 279
           +  A               G E++  T H +          R  + + R +L +   +  
Sbjct: 239 HFGA------------YVCGTEIDYNTVHGLGKATRMNQKWRGPDENIRANLRQYGLEKY 286

Query: 280 -------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                              F   +++PP+G +    K   +KE    EL
Sbjct: 287 YLDVLVSDASKPVWRKAPLFDAIITDPPYGIRESTRKTGTQKEIIKTEL 335


>gi|282890961|ref|ZP_06299475.1| hypothetical protein pah_c032o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499176|gb|EFB41481.1| hypothetical protein pah_c032o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 548

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 93/243 (38%), Gaps = 24/243 (9%)

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR--RIKVLRPLRMSFIL 490
            + ++   + + + D  R ILD+Y        S  +    F Y   +  VLR  +++ ++
Sbjct: 128 EMISQHATQNLFSTDHHRLILDLYG-------SHHVLINQFQYNWDKENVLRK-KIAQLI 179

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
                   E ++   +L  L+++   D+     ++++      S  +E +  ++     +
Sbjct: 180 AAEAQRLREIEVCLYELEELNEA---DLKNGEDEELFAEYLLLSNSEERLSKSQTVYQGL 236

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR-EVSP 609
           ++ +  ++  +N +     +   +  +  E     +    E      S+Q Y  + +V P
Sbjct: 237 QSKRDALLPLLNQYVGVLEKLATLDPMIHEIYQSCHHARLELQEVAYSMQAYMNKIDVCP 296

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP-----SRKLQDIDAELKGVEAQI 664
                +I    +   +K   + G  I      Y YQ         L+++  E++ ++ ++
Sbjct: 297 --ERMHIINERLSLINKLKRKYGSSI---EEIYTYQEKTKQKLHTLENVSNEIEALQEEV 351

Query: 665 ATL 667
             L
Sbjct: 352 LKL 354


>gi|210612840|ref|ZP_03289493.1| hypothetical protein CLONEX_01695 [Clostridium nexile DSM 1787]
 gi|210151393|gb|EEA82401.1| hypothetical protein CLONEX_01695 [Clostridium nexile DSM 1787]
          Length = 997

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 107/374 (28%), Gaps = 88/374 (23%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP++V     A +           P     +YD T G G F              +
Sbjct: 77  GQFFTPQEVCKFLVACV----------KPEPEDIIYDLTYGKGDFF-------------N 113

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +P     +G E++ +   +                    N+Q G    +          
Sbjct: 114 YLPTENNIYGTEIDMKAVKIA------------QYLYPKANLQYGD--IRQYSPVLSGDI 159

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
              NPPF  +W                           +  +   M+   K       GG
Sbjct: 160 VFGNPPFHLEWG------------------------TKEAPVSSQMYYCKKAYQVLKNGG 195

Query: 355 RAAIVLSSSPLFNGRAGSGE-SEIRRWLLENDLIEAIVALPTDLF--FR-TNIATYLWIL 410
              +++  S L +  +  G+  EI +       +    +LP D+F  +  T+  T   IL
Sbjct: 196 LLVLLVPESFLSDDFSNKGDIEEINQM----FNLIVQFSLPADVFKEYGVTSFRTKAMIL 251

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             +                 + + R    K+ ++     ++I   YV     +  +    
Sbjct: 252 QKK---------------SQYVTERPYTTKKVVL--KHPQEIYQTYVLPVLQERRKNAAN 294

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             F  +   +    + +F   +  +  L      RK++         + + + Q      
Sbjct: 295 IYFECQNTDLEGKQKQAFQ--EKTVKLLFDIKRNRKITHKTGQAEKILQEYLKQTKPEEL 352

Query: 531 WAESFVKESIKSNE 544
             + + K  I+  +
Sbjct: 353 SWQEWEKIKIQPED 366


>gi|138896441|ref|YP_001126894.1| hypothetical protein GTNG_2804 [Geobacillus thermodenitrificans
            NG80-2]
 gi|134267954|gb|ABO68149.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1586

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 73/255 (28%), Gaps = 30/255 (11%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIRTLYDPTCG 215
             +Y+   R    ++++      TP +VV        D   +            + DP  G
Sbjct: 830  ELYDKFFRTAFPKMTDRLGIVYTPVEVVDFILKSADDVLQEEFGMRLSDEGVHILDPFTG 889

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRL-----ESDP 268
            TG F+   +                  H  E+    + +    +     RL     E  P
Sbjct: 890  TGTFIVRLLQSGLIRPEDLARKYRNELHANEIVLLAYYIAAINIEEAYHRLSGQDYEPFP 949

Query: 269  RRDLSKNIQQG---STLSKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEKE 315
               L+   + G    TL++ +F            +     + NPP+      + D  +  
Sbjct: 950  GIVLTDTFRLGEDKDTLAETMFPENNERIIRQNRQEIRVIVGNPPYSAGQGSENDNNQNL 1009

Query: 316  HKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              +    R        S   +   L+  ++             G  A V + S + +   
Sbjct: 1010 KYDRLDQRIADTYAASSKAVLKKGLYDSYIRAIRWASDRIGDQGVIAFVTNGSFIDSNTT 1069

Query: 371  GSGESEIRRWLLEND 385
                  +R+ L E  
Sbjct: 1070 DG----LRKCLAEEF 1080


>gi|34762209|ref|ZP_00143216.1| Type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888170|gb|EAA25229.1| Type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 247

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 157 NIYEHLIRRFGSEV--SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
            IY++L + +      ++    F TP  +  L        ++ + + +      + D  C
Sbjct: 100 EIYDYLGKIYHELGIHNKMKGQFFTPFHLSKLMAE--TRVNELIKELNSKKRIKITDAAC 157

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G+G  +   +  + + G        +  +  +L+  T  +    + I  
Sbjct: 158 GSGCLMLGILAVLKEKG--INYQKRIFINCSDLDENTIQMAYVQLTIVG 204


>gi|295189254|gb|ADF83441.1| putative DNA methylase [Lactobacillus phage LBR48]
          Length = 228

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 21/197 (10%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           N  A FE F  S  + + ++    Y+     +        V        +E       + 
Sbjct: 33  NQHAEFEKF-ISDLLFKPKERNDFYRKILAINS------NVSVDTFREYFEE-----YAA 80

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +  +   TP  V  L   +                 + YDPT GTG  +    N    
Sbjct: 81  ERKSQQQDFTPDYVSGLLAKIT------RNDNGSESGWSGYDPTAGTGSLIIKKWNDDRL 134

Query: 230 CGSHHKIPPILVPHG-QELEPETHAVCVAGMLIRRLESDPRRD--LSKNIQQGSTLSKDL 286
             +     P    +  +E         +  + IR +         L +N++Q   +    
Sbjct: 135 AETPFSYAPHNYLYMVEEFGDNVIPYLLHNIAIRGMNCVVIHGDTLERNVKQIYFVQNSQ 194

Query: 287 FTGKRFHYCLSNPPFGK 303
               +F      P   K
Sbjct: 195 DDYMKFSDINVMPHTDK 211


>gi|194216422|ref|XP_001503192.2| PREDICTED: similar to tRNA guanosine-2-O-methyltransferase TRM11
           homolog [Equus caballus]
          Length = 466

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L  + +  A              +G +++  T H +  A       R
Sbjct: 223 DIVFDPFVGTGGLLIASAHFGA------------YVYGTDIDYNTVHGLGKASRKNQKWR 270

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 271 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 330

Query: 315 EHKNG 319
           E   G
Sbjct: 331 EIPKG 335


>gi|315605550|ref|ZP_07880586.1| helicase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312695|gb|EFU60776.1| helicase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1699

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 97/363 (26%), Gaps = 49/363 (13%)

Query: 46   CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
             A +    A+R          +D ES V++          +       + ++ N  S   
Sbjct: 797  DAFQEFVDALRATL----NPAVDNESAVEMLAQHILTAPLFDAMFPDHSFSKQNPVS--R 850

Query: 106  SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            + +     +       +   R E       + +    +  H  +    +M  +Y+    +
Sbjct: 851  AMNTILNMLASHSMLEN--ERRELDAFYKAMVERIEAV--HTLSGKQEIMRTLYDRFFSQ 906

Query: 166  FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGF---LT 221
                +SE      TP +VV        D     F +S       + +P  GTG F   L 
Sbjct: 907  AFPRMSERLGIVFTPVEVVDFIIRSADDAMRTAFGQSLGDPGVAIIEPFAGTGTFVARLL 966

Query: 222  DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRD-------- 271
                   D   H     I      E    ++ +    +  +  ++ ++   D        
Sbjct: 967  QLGVIPPDALEHKYKNDIFA---NEFVLLSYYIASINIEQVYHQVRAEQGVDEGYVEFPG 1023

Query: 272  ----LSKNIQQGSTLSKDLFTGKRFH-------------YCLSNPPF--GKKWEKDKDAV 312
                 +  + +G     + F G   +               + NPP+  G+    D +  
Sbjct: 1024 MTLTDTFQLHEGDGTITEDFEGLAANNERAKAEKDSAITVVVMNPPYSAGQNSANDNNQN 1083

Query: 313  EKEHKNGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                +  E               +                    G  A V +SS +    
Sbjct: 1084 LAYPRLDERIAATYAAQSTRANKNSLYDSYFRALRWASDRIGNRGIIAFVSNSSFVDGNS 1143

Query: 370  AGS 372
            A  
Sbjct: 1144 ADG 1146


>gi|312888635|ref|ZP_07748204.1| helicase domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311298949|gb|EFQ76049.1| helicase domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 1866

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 42/232 (18%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           A++        K+S      +Y+P+ G G F+T+A+            P I      E +
Sbjct: 109 AIVPQVLYQTLKDSGVNPSRIYEPSSGAGIFITEAVK---------SFPEIKQVTAVEKD 159

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             T  V  A   +      P +      ++ +   K      ++   +SN PFG     D
Sbjct: 160 LLTGKVLTA---LASTLGVPAQVQIMGFEETAATEK-----GQYDLIVSNIPFGNFQVYD 211

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +D  +K         F                   +KL      GG  A + + + L N 
Sbjct: 212 RDFTDKAISGKIHNYFFAKG--------------LSKL----ADGGIMAFITTDAFLNNP 253

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNRKTEE 417
                    R +L  +    ++  +P +L   T       +L ++    ++ 
Sbjct: 254 SNRKA----REYLFTHANFVSLSVMPDNLMKDTGNTEAPNHLLVVQKNDSKP 301


>gi|94985645|ref|YP_605009.1| putative type II DNA modification enzyme [Deinococcus geothermalis
           DSM 11300]
 gi|94555926|gb|ABF45840.1| putative type II DNA modification enzyme [Deinococcus geothermalis
           DSM 11300]
          Length = 1318

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 36/152 (23%)

Query: 146 HPDTVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATAL 190
           +   +    + +IYE L+                       +    + TP  ++ L    
Sbjct: 391 NFTDLDAEELGSIYESLLELHPEINTATGTFTLSSAAGNERKTTGSYYTPTGLIELLLES 450

Query: 191 LLDP--DDALFKESPGMIRT---LYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPI 239
            LDP  +DAL K  P        + DP CG+G FL  A   +      A+       P  
Sbjct: 451 SLDPVIEDALTKPDPVAALKALNVVDPACGSGHFLLAAARRIGLALARAEHDVTQPSPEQ 510

Query: 240 LV----------PHGQELEPETHAVCVAGMLI 261
           L            +G +L P    +    + +
Sbjct: 511 LRAATREVIAHCIYGVDLNPMAIELAKVALWL 542


>gi|150004649|ref|YP_001299393.1| putative DNA methylase [Bacteroides vulgatus ATCC 8482]
 gi|149933073|gb|ABR39771.1| putative DNA methylase [Bacteroides vulgatus ATCC 8482]
          Length = 1320

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 22/142 (15%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELPP 350
           F    SN PF             E+       F      +   S+  +  +   K     
Sbjct: 73  FDMVSSNIPF-------------ENTRVYDRNFDRSEDTVRKSSLAAVHNYFFLKGMDTL 119

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
             GG  A + +S  + + +       +R WL+ +  + +   LP +LF    T + + L 
Sbjct: 120 REGGILAYITTSGVMDSPQNRP----VREWLMNHANLVSASRLPDNLFVDAGTEVGSDLI 175

Query: 409 ILSN--RKTEERRGKVQLINAT 428
           +L    +KTE    +   I   
Sbjct: 176 VLQKNTKKTELTEKERNFIETR 197


>gi|77164957|ref|YP_343482.1| hypothetical protein Noc_1465 [Nitrosococcus oceani ATCC 19707]
 gi|254434597|ref|ZP_05048105.1| hypothetical protein NOC27_1528 [Nitrosococcus oceani AFC27]
 gi|76883271|gb|ABA57952.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090930|gb|EDZ68201.1| hypothetical protein NOC27_1528 [Nitrosococcus oceani AFC27]
          Length = 914

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 74/256 (28%), Gaps = 39/256 (15%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L+   +   +  ++++ +I     +     + + +  +++ +   L LD   A  ++S  
Sbjct: 275 LNWSAINPDIFGSMFQAVIDE--EQRGNLGQHYTSVSNIMKVIQPLFLDKLYAELEKSRK 332

Query: 205 MIR------------TLYDPTCGTGGFLTDAMNHVADCGSH---------------HKIP 237
             R             ++DP CG+G FL  A   +                     +   
Sbjct: 333 RDRKLKELLIRLQNLRVFDPACGSGNFLIIAYKELRKLEMEVIDALNAISDQAEMYYSGI 392

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
            +   +G E++   H V    + +   + +          + +   +D            
Sbjct: 393 RLSQFYGIEIDDFAHEVATLSLWLAEHQMNMAFKAKFGYAEAALPLRDSG-----DIVCG 447

Query: 298 NPPFGKKWE---KDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGG 353
           N      WE      D      +    G     G  + S      + H+ +  +      
Sbjct: 448 NA-LRLDWEEVCPPADGSGNPREIYICGNPPFLGTTERSKEQSADMKHVFSSFKSIGYLD 506

Query: 354 GRAAIVLSSSPLFNGR 369
             AA     +    GR
Sbjct: 507 IVAAWFWKGANFIKGR 522


>gi|330813116|ref|YP_004357355.1| methylase of polypeptide chain release factors [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486211|gb|AEA80616.1| methylase of polypeptide chain release factors [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 284

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 32/218 (14%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +   ++L       K     +  L D  CG+G  L   +  +          
Sbjct: 92  LIPRPETEILIEMVLKKIKDKSK-----VLQLLDIGCGSGCLLISCLRELKKSIG----- 141

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G ++  +  AV                 L+K ++          T K+F   LS
Sbjct: 142 -----IGLDISSDALAVSKIN--------VKNYKLNKRVELHKESIFHFLTLKKFDVILS 188

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+      + D +E + KN E      G    +      +   +  L+      G  A
Sbjct: 189 NPPYLS--SAEYDNLEIDVKNFEPKTALKGGHDGTSHYKKIITFASMSLK----KNGLLA 242

Query: 358 IVLSSSPLFNGRAGSGESEIR---RWLLENDLIEAIVA 392
           + L     F  +    E+  R   ++ L N  I  I+A
Sbjct: 243 LELGDQQFFKIKEILAENSFRVLDKYRLINGEIRCILA 280


>gi|330990656|ref|ZP_08314613.1| DNA methylase/helicase SNF2 [Gluconacetobacter sp. SXCC-1]
 gi|329762358|gb|EGG78845.1| DNA methylase/helicase SNF2 [Gluconacetobacter sp. SXCC-1]
          Length = 629

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 60/208 (28%), Gaps = 47/208 (22%)

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L++        +      ++ +P CGTG     A           ++   +   G E +
Sbjct: 151 ELIVHALWNKVLQMGFRGGSVLEPGCGTG-LFIAA--------RPERLEGRIAFTGIEND 201

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
             T  +              R   ++ I+     +  L  G  +   + NPPF  +  + 
Sbjct: 202 LITARIAR------------RLYPNQWIRSEDFTTVKLANG--YDLAIGNPPFSNRTVRG 247

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            + +         GR G  L                +       GG A  V S   L   
Sbjct: 248 PEGL---------GRLGLSLHD----------FFIARSVEALRPGGIAIFVTSRHALDKT 288

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD 396
            + +     RR + E   +   V LP  
Sbjct: 289 DSTA-----RRTIAEMADLMGAVRLPAG 311


>gi|293378951|ref|ZP_06625106.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
 gi|292642492|gb|EFF60647.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
          Length = 248

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 18/129 (13%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +I+       +   +  TP+ +V     +       + +    +  T  +P  G G F
Sbjct: 3   EEIIK--SKLRVQKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAF 55

Query: 220 LTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDP 268
           L   +    +  S      ++             +G EL  +   +CV  M  +  ++  
Sbjct: 56  LVAILERKLNMVSKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYK 115

Query: 269 RRDLSKNIQ 277
            +    N +
Sbjct: 116 EQVEHHNGE 124


>gi|317178970|dbj|BAJ56758.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 1611

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 53/458 (11%), Positives = 129/458 (28%), Gaps = 57/458 (12%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
             ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 858  ELIKNLYNTFFKVAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFD 917

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAG----------- 258
            P  GTG F+   ++   +  S   +    + H    ++    + + +             
Sbjct: 918  PFTGTGSFIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYITLINITQAAQSRDGS 977

Query: 259  ------------MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKK 304
                        + I   ++D          + +   KD    K     + NPP+  G K
Sbjct: 978  LKNFKNIALTDSLDIYEEKNDKGVLPIFEDLKENKEIKDTLADKNIRVIIGNPPYSAGAK 1037

Query: 305  WEKDKDAVEKEHKNGELGRFGPGLPKISD---GSMLFLMHLANKLELPPNGGGRAAIVLS 361
             + D +      K  +      G    +     +   L+             G    V++
Sbjct: 1038 SQNDNNQNLSHPKLEKKVYEKYGKNSTAKVGATTRDTLIQSIYMASDLLKDRGVLGFVVN 1097

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LFFRTNIATYL 407
               + +          R+ + ++     ++ L  +              +F   + AT  
Sbjct: 1098 GGFIDSKSGDG----FRKCVAKDFAHLYVLNLRGNARTSGETFKKEGGKIFDSGSRATIA 1153

Query: 408  WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR--RQIL----DIYVSREN 461
             I   +    +   +   +  D         +     N D      I       ++++ N
Sbjct: 1154 IIFFVKDASVKNSAIHYYDIGDYLKREEKLNRLANFTNLDAIPFETITPNNKGDWINQRN 1213

Query: 462  GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDIL 519
              F +++  +    R+   +  +  S ++      +     D     +     ++  D+ 
Sbjct: 1214 DDFEKLIPLKRDKKRQNPSVFDINSSGVVSGRDPWVYNFSPDALMCSVQKCIDTYNADLK 1273

Query: 520  KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
            +        +      VK +    +    ++   K+ I
Sbjct: 1274 RFNAYFREAFKQRAKGVKSADLYKQLNDKEITTDKTKI 1311


>gi|152993810|ref|YP_001359531.1| hypothetical protein SUN_2234 [Sulfurovum sp. NBC37-1]
 gi|151425671|dbj|BAF73174.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1069

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 104/310 (33%), Gaps = 46/310 (14%)

Query: 40  LLR-RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF----YNTSEYSLSTLGST 94
             +   +   +  +     +Y     +  ++   +K+  +         S Y  +T    
Sbjct: 269 FYKIYFKAINQGNKKLNIPEYNGGLFAADEVLESLKIDNHVIDACPLALSAYDFNTDIDV 328

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           N   ++     +  +  KA   D DF ++ ++ +K G+ Y                P+ +
Sbjct: 329 NILGHIFENSLNDIEELKARINDTDFDASKSKRKKDGVFYT---------------PEYI 373

Query: 155 MSNIYEHLIRRFGSEVSEGAE----DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              I ++ + +      E       +   P++   L        +         +   + 
Sbjct: 374 TRYIVDNTLGKLCQAKKEALGLDDVEIEVPKNPKKLNKTETKLKEALEAYREYLLGLKIL 433

Query: 211 DPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPET 251
           DP CG+G FL  A+NH+ +                        K       +G ++  E 
Sbjct: 434 DPACGSGAFLNQALNHLLEEHDFIDEGIRTLMGGSVLGLYDVKKGILENNLYGVDINAEA 493

Query: 252 HAVCVAGMLIRRLESDPRRD-LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +    + +R +ES  + + L+  I+ G++L  D    +     +    F + +  D  
Sbjct: 494 VEIAKLSLWLRTVESGRKLNKLADKIKVGNSLIDDKSVAE--DAFVWEEEFPEVFGADAS 551

Query: 311 AVEKEHKNGE 320
           A EKE + GE
Sbjct: 552 ASEKELQKGE 561


>gi|116617586|ref|YP_817957.1| adenine-specific DNA methylase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096433|gb|ABJ61584.1| Adenine-specific DNA methylase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 329

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 100/321 (31%), Gaps = 50/321 (15%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIR 164
           S+ D    I ED   +S     E       + +   S I++    +         +  + 
Sbjct: 27  SYIDALIEILEDI--NSQTVHREFDKPSNDVVQIIQSTIDMDWSLLSPAEKRKALQLAVL 84

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   E    A   +TP  + +L    +                T+ D   G+G  L    
Sbjct: 85  KANREDQTPANYQITPDGIGYLLADFI------NQTARLRDNDTIIDMNVGSGNLL---- 134

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLS 283
                   +  +   +   G + +    A+  A   +I   E+   ++ + +I++     
Sbjct: 135 -----WTINEMLDVTVKRIGIDNDETQLALASATDEIINSDETTLYKEDTISIEEPP--- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +    +++ P G    +  D     ++NG                      L 
Sbjct: 187 -------KAKVVIADLPVGYYPLQPSDKFITRNQNGRSF---------------VHHLLI 224

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
            K        G   +++ ++ L     G    ++ +++     ++A + LP + F     
Sbjct: 225 EKSLDFVADDGWIYLLVPANVL----NGDEAKKVLQFVTSRAQLKAFLQLPNEFFQEVRA 280

Query: 404 ATYLWILSNRKTEERRGKVQL 424
              + +L  ++T  +  +V +
Sbjct: 281 TKAILVLKKQRT--KNNEVLM 299


>gi|298485667|ref|ZP_07003746.1| Type II restriction enzyme, methylase subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159693|gb|EFI00735.1| Type II restriction enzyme, methylase subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 997

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 84/333 (25%), Gaps = 72/333 (21%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF------------MTPRDVVHLATALLLD 193
                   ++ NIYE  +        +G  +              TP  +V         
Sbjct: 313 SFSVFSSEILGNIYEVFLSERIRINVDGKIELQPKKDHIDRDVVTTPGHIVRDIIRNTAV 372

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV------------ 241
                  +   +     D  CG+G FL +    + D    + I                 
Sbjct: 373 EFCRNKTDKQILNSKFADIACGSGAFLLELFQALQDILIDYYIVHDKSKLQQLTSHSFKL 432

Query: 242 ------------PHGQELEPETHAVCVAGM------------------LIRRLESDPRRD 271
                        +G + +      C  G+                  ++ +++++    
Sbjct: 433 KLCVKKEILTKCIYGIDKDFNAVKACSFGLLLKLLEGESKDTIELNTSILPKIDNNILFG 492

Query: 272 LSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            S      +  + D           RF   + NPP+      +        +        
Sbjct: 493 NSLIDSNDNIKTTDAIAVNPFNIVHRFDVIIGNPPY---MATEHMKQLTPLELPIYKNKY 549

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               K  D   LF+      L+      G    +L S     G        +R+ L E  
Sbjct: 550 KSAHKQFDKYFLFVERSMQLLK----DEGFLGYILPSKFTKVGAGQG----LRKLLTEQK 601

Query: 386 LIEAIVALP-TDLFFRTNIATYLWILSNRKTEE 417
            +  +++   + +F      T L  L   +  +
Sbjct: 602 YLSKLISFGASQVFKDKTTYTCLLFLKKSEQTK 634


>gi|158314392|ref|YP_001506900.1| hypothetical protein Franean1_2564 [Frankia sp. EAN1pec]
 gi|158109797|gb|ABW11994.1| hypothetical protein Franean1_2564 [Frankia sp. EAN1pec]
          Length = 301

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 8/65 (12%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                  A  F TP  +  +  A L+              + + DP  GTGG    A   
Sbjct: 150 ADGARVAAGQFYTPGPIADILAAGLMTGA--------QPGQPVIDPAVGTGGLFRAAAQA 201

Query: 227 VADCG 231
           +   G
Sbjct: 202 LRAGG 206


>gi|308270179|emb|CBX26791.1| hypothetical protein N47_A08200 [uncultured Desulfobacterium sp.]
          Length = 1356

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 42/240 (17%)

Query: 1   MTEFTGSAASLANFIW------KNAEDLWGDF-------KHTDFGKVILP-------FTL 40
           M   TG+ +++ +         + A+ L             +D  + IL        FT+
Sbjct: 36  MDPDTGTVSNIDSLPHLTDSQHQTAKLLRETMAHYQTSSPASDLKE-ILGRIVREQAFTV 94

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT--RN 98
           L RL          +  + +A G ++   + + +VA            + LG T    RN
Sbjct: 95  LNRLCALRMAEARGILIESVAKGYNSKGFQLYARVAK-----------TALGETGNTYRN 143

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L S    FS +   +F+ +   S + RL  K   L  +    + IEL      D  +  
Sbjct: 144 YLFSVFDEFSIDLAVLFDRY---SPMGRLFPKETALLALLDKINDIELESLWAEDETIGW 200

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL--DPDDALFKESPGMIRTLYDPTCG 215
           IY++   +   E  +  ++   PR+   LA             F     + R  Y+ T G
Sbjct: 201 IYQYFNSK--EERKKMRDESQAPRNSRELAVRNQFFTPRYVVEFLTDNTLGRIWYEMTKG 258


>gi|157952320|ref|YP_001497212.1| hypothetical protein NY2A_B016L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|2454654|gb|AAC03124.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
           NY2A]
 gi|155122547|gb|ABT14415.1| hypothetical protein NY2A_B016L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 368

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 61/229 (26%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             +    E       F TP+ V       ++DP +            + +P+CGTG  ++
Sbjct: 10  FGKTLSKEKKSKQGIFFTPKSVREKLFGYVVDPKN------------ILEPSCGTGEIIS 57

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           D ++                  G EL+ + + VC                     ++  T
Sbjct: 58  DCIDRFPSAN----------ITGVELDEDIYDVCK----------------RTYTRENVT 91

Query: 282 LSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           +  D F    G++F + + NPPF  + +         HKN +    G           L+
Sbjct: 92  IINDDFLAWKGEKFDFIVGNPPFVVRPKG--------HKNDDRIVRGRSN--------LY 135

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +  L   +       G  A ++ S+             IR+ ++  D++
Sbjct: 136 VEFLFKCITEHLKEDGILAFIIPSTI----GNSKFYEPIRKLIITLDIL 180


>gi|159899059|ref|YP_001545306.1| hypothetical protein Haur_2540 [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892098|gb|ABX05178.1| hypothetical protein Haur_2540 [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1612

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 17/157 (10%)

Query: 288  TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                F   + NPP+ +    DK  V+          +   +    +GS    +    K  
Sbjct: 1005 PNGGFDAVVGNPPYIRIQFLDKSDVD----------YFNNIYLSPNGSYDIYILFIEKSI 1054

Query: 348  LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATY 406
               N  G +  +  +  + N        +IR  + E+  +  +V      LF        
Sbjct: 1055 ELLNINGISGYICPNKFMTNAYGD----KIRNIIGESRNLFRLVDFGDYQLFEGATTYCC 1110

Query: 407  LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            L  L   K   R   + +I+  D      N+  K  I
Sbjct: 1111 LVFL--CKNNNRTLDIPVISVKDYINIENNKVIKFNI 1145


>gi|325473763|gb|EGC76952.1| hypothetical protein HMPREF9353_02054 [Treponema denticola F0402]
          Length = 779

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 52/206 (25%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDT---------VPDRVMSNIYEHLIRRFGSEV 170
           F S             +   F+      D          V   ++  I+E+L+       
Sbjct: 370 FRSGQNNGYPYDASCGLLDFFARYNFTIDETDPEDREVGVDPEMLGKIFENLLED----- 424

Query: 171 SEGAEDFMTPRDVVHLATA-------------------LLLDPDDALFKESPG-----MI 206
           ++    F TP+++V                        L+L+ D    K+          
Sbjct: 425 NKDKGAFYTPKEIVQYMCRESLIAYLSEETQDEPAMRNLVLNNDIQTIKDKKKVLSALKN 484

Query: 207 RTLYDPTCGTGGFLTDAMNH-----------VADCGSHHKIPPILV---PHGQELEPETH 252
             + DP  G+G F    +N            +AD  +  +I   +V    +G ++E    
Sbjct: 485 IKICDPAVGSGAFPMGMLNELFACRILLEGDIADEENRSRIKKEIVRENIYGVDIEKGAV 544

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQ 278
            +      +  +  +       N+  
Sbjct: 545 DIARLRFWLAIIVDEKIPLPLPNLDY 570


>gi|57208454|emb|CAI42394.1| tRNA methyltransferase 11 homolog (S. cerevisiae) [Homo sapiens]
          Length = 458

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L    +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIACAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E   G
Sbjct: 325 EIPKG 329


>gi|195540507|emb|CAQ76853.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 117

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 22/123 (17%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +++        +       + DP+ GTG F       + D             +G EL+ 
Sbjct: 14  MIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRDKSE---------LYGVELDS 64

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+      +        R   +   Q ++          F   L+N PFG     DK
Sbjct: 65  VTGAIAKQ---LHPNTHIEVRGFEEVPYQNNS----------FDLVLTNVPFGNFRIADK 111

Query: 310 DAV 312
             +
Sbjct: 112 TMI 114


>gi|72161375|ref|YP_289032.1| DNA methylase [Thermobifida fusca YX]
 gi|71915107|gb|AAZ55009.1| putative DNA methylase [Thermobifida fusca YX]
          Length = 1222

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 61/278 (21%)

Query: 35  ILPFTLLRRLECA--LEP--------------TRSAVREKYLAFGGSNIDLESFVK---- 74
           +L    +R  E    LE                   +R+ ++A   S  D +  +     
Sbjct: 77  VLATVFVRFCEDNRLLEQPFISGPRDASGRYDIAQELRDAWVAEDRSRTDRDWLIHAFEA 136

Query: 75  -----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTIARL 127
                +    F        +   S     NL ++     D+   +  F D D+++     
Sbjct: 137 MSVSPIVRGLFDRAHNPMWTITPSHQAAKNLIAFWREVGDDGHIRHDFTDPDWNTRFLGD 196

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
               L   I +N++  +  P+ V + ++    E  I  FG                    
Sbjct: 197 LYQDLSEDIRENYALFQ-TPEFVEEFILDYTLEPAIDEFG-------------------- 235

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPIL--- 240
               LD       ++      L DPTCG+G FL  A + +     +         ++   
Sbjct: 236 ----LDGQGGRVYQANSQGFRLIDPTCGSGHFLIGAFHRILARWREAAPGASDWDLIART 291

Query: 241 --VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
               HG +  P   A+    +LI  ++      LS+  
Sbjct: 292 LRSIHGVDKNPYAVAIARFRLLIAAMKEAGITTLSQGN 329


>gi|308182843|ref|YP_003926970.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4]
 gi|308065028|gb|ADO06920.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4]
          Length = 1606

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 71/251 (28%), Gaps = 31/251 (12%)

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
             ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 852  ELIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFD 911

Query: 212  PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAG----------- 258
            P  GTG F+   ++      S   +           ++   ++ + +             
Sbjct: 912  PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 971

Query: 259  ------------MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKK 304
                        + I   ++D          + +   KD   G+     + NPP+  G K
Sbjct: 972  LKNFKNIALTDSLDIYEEKNDKGVLPIFEDLKENKDIKDTLAGQNIRVIIGNPPYSSGAK 1031

Query: 305  WEKDKDAVEKEHKNGELGRFGPGLPKISD---GSMLFLMHLANKLELPPNGGGRAAIVLS 361
             E D +      K  +      G    +     +   L+             G    V++
Sbjct: 1032 SENDNNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVN 1091

Query: 362  SSPLFNGRAGS 372
             S + +  A  
Sbjct: 1092 GSFIDSKSADG 1102


>gi|301607277|ref|XP_002933235.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Xenopus (Silurana) tropicalis]
          Length = 478

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 24/130 (18%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCV---AGM 259
                ++DP  GTGG L  + +  A               G E++  T H +        
Sbjct: 218 KPNDMVFDPFVGTGGLLVSSAHFGA------------YVCGTEIDYNTVHGLGKATRMNQ 265

Query: 260 LIRRLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             R  + + R +L +   +                     F   +++PP+G +    K  
Sbjct: 266 KWRGPDENIRANLRQYGLEKYYLDVLLSDASKPVWRKAPLFDAIITDPPYGIRESTRKTG 325

Query: 312 VEKEHKNGEL 321
            +KE    +L
Sbjct: 326 TQKEIIKNDL 335


>gi|296445757|ref|ZP_06887710.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gi|296256737|gb|EFH03811.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 608

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 101/366 (27%), Gaps = 83/366 (22%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-------------------TLY 210
             +      TP  +        +        ++                        ++ 
Sbjct: 13  RRKRQGIVYTPEPIARFLAERTIAVSLDEMSDALAAAHRGRETAAFWREWLAALRSFSIV 72

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG G  L  A   +A           L   G +++ +     ++  L   ++ DP  
Sbjct: 73  DPGCGEGALLLAAAQEMARRYRDA--AEHLRKLGVDVDLDPAREAISHNLF-GVDIDPLA 129

Query: 271 D-------------------LSKNIQQGSTLSKDL--------------FTGKRFHYCLS 297
                               L + I+ G +L  D                  + F   + 
Sbjct: 130 AARARRALARLAPSPEAALRLEETIRAGDSLVDDPSASAGAFDWRAAFPQAARGFDIVIG 189

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+          V  E+               ++ + L+       L L   GG    
Sbjct: 190 NPPY----------VRMEYLKPLKPWLAQRYHVAAERADLYAYFFEKGLSLLREGGRLGY 239

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRK 414
           I  SSS  F   AG+    +R  L  +  +E +V    LP  +F        +  L    
Sbjct: 240 I--SSSTFFRTGAGA---RLRGLLARSGAVECVVDFGDLP--VFDDVVAYPAIVTLRKGA 292

Query: 415 TEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             +       ++A   DL  + R   +         R ++   +   E    +R+ D   
Sbjct: 293 ATQGDLSFLRLDAAPPDLCATFRETARPMP------RARLGAGFWRFEEEALARLRDKIA 346

Query: 473 FGYRRI 478
            G R +
Sbjct: 347 TGRRTL 352


>gi|296394144|ref|YP_003659028.1| type III restriction protein res subunit [Segniliparus rotundus DSM
            44985]
 gi|296181291|gb|ADG98197.1| type III restriction protein res subunit [Segniliparus rotundus DSM
            44985]
          Length = 1636

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 65/249 (26%), Gaps = 30/249 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   +   ++ ++      TP  VV            +   K   G    + DP
Sbjct: 860  VIAELYERFFKIGFAKQADALGIVYTPVQVVDWILRAADAVSREHFGKGLTGEDVHVLDP 919

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  M                  H  E+    + V    +      +    S 
Sbjct: 920  FTGTGTFITRLMQTGLVTPHDLARKYTSELHANEIMLLAYYVAAVNIESTYHALAGKTSG 979

Query: 268  PRRDLSKN---------IQQGSTLSKDLFTGK----------RFHYCLSNPPF--GKKWE 306
               +              +   T+  D+F             + +  + NPP+  G+   
Sbjct: 980  DEYEPFPGIVLTDTFQISESDDTMDADMFPQNNDRITRQLATKINVVVGNPPYSVGQDSA 1039

Query: 307  KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---GGGRAAIVLSSS 363
             D +A  K     +           +                  N     G  A V +  
Sbjct: 1040 NDNNANVKYPTLDKHIENTYAKRSTATNKNSLYDSYIRAFRWATNRIGDKGIVAFVSNGG 1099

Query: 364  PLFNGRAGS 372
             +    A  
Sbjct: 1100 WIDGNTADG 1108


>gi|157130331|ref|XP_001655665.1| hypothetical protein AaeL_AAEL011749 [Aedes aegypti]
 gi|108871917|gb|EAT36142.1| conserved hypothetical protein [Aedes aegypti]
          Length = 305

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 49/176 (27%), Gaps = 25/176 (14%)

Query: 159 YEHLIRRFGSEVSEGA--EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +E  ++      +     E ++TP  +       +    D L  +       + D  CG 
Sbjct: 103 FEEFLQTVDGFENPKVTLEQYITPSHIASHMLYTIQTNYDDLENK------LVLDLGCGA 156

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G     A    A               G E++ +   +    +           D    I
Sbjct: 157 GMLSVGAALLGAAH-----------VVGVEIDADAIEIFKGNI------EGFELDNVDCI 199

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           Q      +D+    +F   L NPPFG K     D            R    L K S
Sbjct: 200 QWDVLGMEDIDFEHKFDTVLMNPPFGTKQNSGIDMKFLRIGLALADRSVYSLHKTS 255


>gi|145632950|ref|ZP_01788683.1| HemK [Haemophilus influenzae 3655]
 gi|144986606|gb|EDJ93172.1| HemK [Haemophilus influenzae 3655]
          Length = 292

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 23/178 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR          L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTESLVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +     +L     +    +   G           +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSNAERNQLNVQFLQSRWFDNITG-----------QFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGG 354
           NPP+           + EH +    RF P    +++      L H+        N  G
Sbjct: 198 NPPYID--------AQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNG 247


>gi|326915963|ref|XP_003204281.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Meleagris gallopavo]
          Length = 479

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 33/112 (29%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +YDP  GTGG L  + +  A           +   G+              +   
Sbjct: 233 KPNDIVYDPFVGTGGLLISSAHFGAYVCGTDIDYNTIHGLGKASRKNQKWRGPDENIRAN 292

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           L          +     +       G  F   +++PP+G +    +   +KE
Sbjct: 293 LRQYGLEKYYLDALVSDSSRPIWRKGTLFDAIITDPPYGIREATRRTGSQKE 344


>gi|268324632|emb|CBH38220.1| hypothetical protein BSM_16970 [uncultured archaeon]
          Length = 373

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 22/204 (10%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           M    K       GGR A +L S  L+         ++R+ LL + +I+ IV   + +F 
Sbjct: 1   MLFLIKALTLLRIGGRQAFILPSPWLYMPS----YVDLRKSLLSSVIIDQIVLFRSSVFE 56

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ-------- 451
           +  + T + I+ N+K    + K + I          +   +  I + DQ  +        
Sbjct: 57  KVTVETCIEIVENKKPISAQMKFKEI-----SNKPSSFEGRVEIFSQDQILKQKESNLCQ 111

Query: 452 ----ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
                  +   R + +++R+ D  T     +   R  +      +  +     D   +K 
Sbjct: 112 SKYGAAHVLFKRISDEYTRLGDLTTIICG-LTPYRKGKGKPPQSQHIVKNRAFDTNHKKD 170

Query: 508 SPLHQSFWLDILKPMMQQIYPYGW 531
               Q            Q+    W
Sbjct: 171 ITYRQYIMGRDFHRYFWQLQKERW 194


>gi|33860613|ref|NP_892174.1| putative RNA methylase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633555|emb|CAE18512.1| Putative RNA methylase family UPF0020 [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 374

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 41/180 (22%)

Query: 209 LYDPTCGTGGFLTDAMNHV-------------------------ADCGSHHK----IPPI 239
           L D  CG+G FL +A+N +                          +     K       +
Sbjct: 193 LVDLMCGSGTFLIEAINQILKVPLKFQQFYLFENWLDFNKYIFLEEKNKAQKRVVTFEKL 252

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G E+  +        + +  LE       +    Q        F        L NP
Sbjct: 253 SKTIGCEINKDVFDQAKVNIQLAGLE-------NYIELQNDDFKNIQFKSSE-GLVLCNP 304

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPK----ISDGSMLFLMHLANKLELPPNGGGR 355
           P+GKK   + + +      GE  +      +      +  +   + + + L++P + GG 
Sbjct: 305 PYGKKLGDENELITLYEDMGEFLKKNFSGWEFWLLSGNPKLTRYLKMKSSLKIPVSNGGI 364


>gi|188527483|ref|YP_001910170.1| hypothetical protein HPSH_03515 [Helicobacter pylori Shi470]
 gi|188143723|gb|ACD48140.1| hypothetical protein HPSH_03515 [Helicobacter pylori Shi470]
          Length = 1409

 Score = 37.8 bits (86), Expect = 5.4,   Method: Composition-based stats.
 Identities = 60/488 (12%), Positives = 139/488 (28%), Gaps = 66/488 (13%)

Query: 43   RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
            RL+   E           +  G+   +   +K        TS      +      +N+++
Sbjct: 553  RLKDIFEKNPEIFNGFLDSLRGN---IHQSIKEDEALDMITSHIITKPIFDAIFGDNIKN 609

Query: 103  YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                 S     + E           +    LY+  K    +          ++ N+Y   
Sbjct: 610  ---PISKALDKMVEKLSTLGLQGETKDLKNLYESVKT-EAMRAKSQKSQQELIKNLYNTF 665

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             +    + SE      TP +VV                 +      T++DP  GTG F+ 
Sbjct: 666  FKEAFRKQSEKLGIVYTPIEVVDFILRAADGILKKHFNTDFNDKNITIFDPFTGTGSFIA 725

Query: 222  DAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGML---------IRRLESDPRR 270
              ++   +  S   +           ++    + + +  +          ++  ++    
Sbjct: 726  RLLSKENELISDEALKEKFLNHLFAFDIVLLAYYIALINITQAAQSRDSSLKNFKNIALT 785

Query: 271  D-LSKNIQQGSTLSKDLFTGKRFH-------------YCLSNPPF--GKKWEKDKDAVEK 314
            D L    ++       +F   + +               + NPP+  G K + D +    
Sbjct: 786  DSLDIYEEKNDKGVLPIFEDLKENKEIKSTIEKQNIRVIIGNPPYSAGTKSQNDNNQNLS 845

Query: 315  EHKNGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              K  +      G        + +   L+             G    V++ S + +  A 
Sbjct: 846  HPKLEKRVYEKYGKNSTAQVGNTTRDTLIQSIYMASELLKDRGVLGFVVNGSFIDSKSAD 905

Query: 372  SGESEIRRWLLENDLIEAIVALPTD------LF-------FRTNIATYLWILSNRKTEER 418
                  R+ + +      ++ L  +       F       F +     + I+   K    
Sbjct: 906  G----FRKCVAQEFAHLYVLNLRGNARTSGETFKKEGGKIFDSGSRVTIAIIFFVKDTSV 961

Query: 419  RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------DIYVSRENGKFSRMLD 469
            +     I+  D+   +  E K  R+ +      I            ++++ N  F +++ 
Sbjct: 962  KNST--IHYYDIGDYLTREEKLHRLAHFTNLDAIAFETIIPNNKGDWINQRNDAFEKLIP 1019

Query: 470  YRTFGYRR 477
             +    R+
Sbjct: 1020 LKRDKKRQ 1027


>gi|54023589|ref|YP_117831.1| putative DNA metyltransferase [Nocardia farcinica IFM 10152]
 gi|54015097|dbj|BAD56467.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 558

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 15/134 (11%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   +      TP ++       +L    A    +      + DP CG G  L      +
Sbjct: 8   AGERKRHGRHYTPPELARFLARRVL----AHLPPASAAGWRVLDPACGEGELLLA----L 59

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +  +    +   G +L+    A   A      + +D                    
Sbjct: 60  HGEAARVRPGVPIRMTGYDLDESALARARARAAAAGMVAD-------WHTGDFLSEAARL 112

Query: 288 TGKRFHYCLSNPPF 301
              RF   ++NPP+
Sbjct: 113 GPGRFDAIITNPPY 126


>gi|224418458|ref|ZP_03656464.1| SAM dependent methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253827774|ref|ZP_04870659.1| putative O-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313141990|ref|ZP_07804183.1| methyltransferase small [Helicobacter canadensis MIT 98-5491]
 gi|253511180|gb|EES89839.1| putative O-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313131021|gb|EFR48638.1| methyltransferase small [Helicobacter canadensis MIT 98-5491]
          Length = 230

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 20/98 (20%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
              + + +   G+G         V            +     E  P+   +C   + I  
Sbjct: 28  KPKKQVLEVGSGSGVLGLLCAKEVE-----------MDLTMIEKNPKMLELCQHNLRING 76

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           +E+            G    +  F   +F Y LSNPPF
Sbjct: 77  VEA---------KLMGGDFLEYNFLDLKFDYILSNPPF 105


>gi|109072797|ref|XP_001107281.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           isoform 2 [Macaca mulatta]
          Length = 460

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L  + +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIASAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E   G
Sbjct: 325 EIPKG 329


>gi|301758661|ref|XP_002915180.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Ailuropoda melanoleuca]
          Length = 460

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L  + +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIASAHFGA------------YVYGTDIDYNTVHGLGKASRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E + G
Sbjct: 325 EIQKG 329


>gi|326692198|ref|ZP_08229203.1| hypothetical protein LargK3_00331 [Leuconostoc argentinum KCTC
           3773]
          Length = 249

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN--------- 225
            +  TP+ +V+L         + L +    +  T  +P+ G G FLT+ +          
Sbjct: 16  GEVFTPKRIVNLMLD-----QEELQENLRDLSSTFLEPSAGEGAFLTEILRRKLDVARQV 70

Query: 226 -HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
               +    + +  +   +G EL  +   + V  M++
Sbjct: 71  SETREAYDENALIALASLYGIELLEDNVELLVMNMIM 107


>gi|237738470|ref|ZP_04568951.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
 gi|229420350|gb|EEO35397.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
          Length = 1017

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 80/242 (33%), Gaps = 26/242 (10%)

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +   + + T E + ++        +     E +++R+  +   + I     S E  K  +
Sbjct: 38  VMTFTKKATAEIKERILK------FLKEICESEEKRVEIEKNLQNIYGDVFSFEISKVKK 91

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-QSFWLDILKPMMQQ 525
           +         ++K+      +  + K  +A      ++  +     +   +   + + + 
Sbjct: 92  IYKNIVENKDKLKIYTIDSFTNTIFKKAIAPYLKIYSYEIVDEEENRKILIRTFEKLFEN 151

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP------------ 573
              +   +SF++++ + +  + +++  +       +   G+   + +P            
Sbjct: 152 REDFNLFKSFLEDNSEKDMDRYVELIRNIINQRWKMILLGKNLEKKEPLDYKPALPILEK 211

Query: 574 -------VTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
                  +  + G+   D    +Y      +   +Y     +  + D +   + +  K  
Sbjct: 212 QEEILKEIAGIKGKPFDDLVKKDYRGYFSSKDKGEYLKENYNIFLKDKFWSGVKVKSKKG 271

Query: 627 EI 628
           +I
Sbjct: 272 DI 273


>gi|313891197|ref|ZP_07824816.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120560|gb|EFR43680.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 318

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +    + +   L+     G   AI L+ S L N         +++WL +   + A+V LP
Sbjct: 207 TYAHHLLMEQSLKYLKKNG--FAIFLAPSNLLNSPQSDV---LKKWLKDYAQLRAVVTLP 261

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQ 423
             +F     A  + +L  +K  E+ G+  
Sbjct: 262 ESIFGNQANAKSIIVL--QKNTEKNGETF 288


>gi|255024501|ref|ZP_05296487.1| HsdM type IC modification subunit [Listeria monocytogenes FSL
          J1-208]
          Length = 51

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 11/49 (22%)

Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
              G    T +   I      + L        ++V          + D
Sbjct: 3  NQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNSVLRGKTWESVYSQD 51


>gi|227487648|ref|ZP_03917964.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227092342|gb|EEI27654.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
            ATCC 51867]
          Length = 1071

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 66/253 (26%), Gaps = 37/253 (14%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              D +  S    L+K     +        E+   +   +V+  +YE   ++     +E  
Sbjct: 822  LSDANLESETDGLQKFYESVR----VRAAEVSSASGKQQVIKELYERFFQKAFKRDAEKL 877

Query: 175  EDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTD----------- 222
                TP ++V        D   +   K        + DP  GT  F+             
Sbjct: 878  GIVYTPVEIVDFILRAANDVSLEHFGKGLSDEGVCILDPFAGTSTFMVRLLQSGLIKPDD 937

Query: 223  -AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR---------LESDPRRDL 272
             A  +  +  +   +          +E  T+    A    R           +     D 
Sbjct: 938  MARKYAGELFATEIMLLAYYVSAVNIE-TTYNALRAEQAQRNGDPAPDYIPFDGIALADT 996

Query: 273  SKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
             +  ++G T     F             R +  + NPP+        D            
Sbjct: 997  FQIHEKGDTPDLGFFVDNNDRIERQKKARINVIVGNPPYSVGQTSANDNNANMKYKTLDS 1056

Query: 323  RFGPGLPKISDGS 335
            R        S G+
Sbjct: 1057 RIAATYAAKSTGT 1069


>gi|163785432|ref|ZP_02180043.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879301|gb|EDP73194.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 150

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 23/146 (15%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  +V   T L+ +    L          + +P CG   FL     H       H
Sbjct: 26  GIFFTPEWIVDFMTNLIDENKLNLSD------LKILEPACGICQFL-----HGIRKNKKH 74

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G E+  E         +I  +E +   +  + I     L +   T  RF  
Sbjct: 75  IFIHASKRIGVEINKE---------IIDYVEQNNSNNDIQIILHDYLLWE---TDSRFDV 122

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGE 320
            + NPP+G     +  +++ + +   
Sbjct: 123 IIGNPPYGIPSLSEHYSIKVDSETKR 148


>gi|332824892|ref|XP_003311521.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Pan
           troglodytes]
          Length = 463

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L    +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIACAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E   G
Sbjct: 325 EIPKG 329


>gi|330445416|ref|ZP_08309068.1| -(glutamine-N5) methyltransferase, ribosomal protein L3-specific
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489607|dbj|GAA03565.1| -(glutamine-N5) methyltransferase, ribosomal protein L3-specific
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 310

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 24/143 (16%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +     L+ +  +    + P     + D   G+G       +   +     
Sbjct: 108 ERVLIPRSPIG---ELIENRFEPFLSQEPT---RIMDLCTGSGCIGIACAHMFPEAEVDI 161

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      ++ P+  AV    +    LE       S  ++             ++  
Sbjct: 162 ----------VDISPDALAVAEQNIADHGLEQQVIPLRSDLLRD--------VPKDKYDL 203

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK 317
            ++NPP+  + + D    E  H+
Sbjct: 204 LVTNPPYVDQEDMDSLPDEFRHE 226


>gi|94420683|ref|NP_001026882.2| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Homo sapiens]
 gi|74723330|sp|Q7Z4G4|TRM11_HUMAN RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|33329797|gb|AAQ10284.1| putative RNA methylase [Homo sapiens]
 gi|119568509|gb|EAW48124.1| chromosome 6 open reading frame 75, isoform CRA_a [Homo sapiens]
          Length = 463

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L    +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIACAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E   G
Sbjct: 325 EIPKG 329


>gi|116334898|ref|YP_796423.1| hypothetical protein LVIS_B22 [Lactobacillus brevis ATCC 367]
 gi|116100245|gb|ABJ65392.1| hypothetical protein LVIS_B22 [Lactobacillus brevis ATCC 367]
          Length = 236

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 17/111 (15%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI+   S   +   +  TP+ +V L           L +    +  T  +P+ G G F
Sbjct: 4   ERLIK--SSSRVKAHGEVFTPKRIVTLMLD-----QPELQEPLHSLSATFLEPSAGEGAF 56

Query: 220 LTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           L + +             A   S + +  +   +G E   +   + V  M+
Sbjct: 57  LVELLKQKMAVALSKSTSATTYSRNCLIALSSLYGIEYLEDNVEMLVMNMI 107


>gi|197098128|ref|NP_001127452.1| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Pongo abelii]
 gi|75054946|sp|Q5R962|TRM11_PONAB RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|55729943|emb|CAH91698.1| hypothetical protein [Pongo abelii]
          Length = 463

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L    +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIACAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E   G
Sbjct: 325 EIPKG 329


>gi|147668833|ref|YP_001213651.1| hypothetical protein DehaBAV1_0182 [Dehalococcoides sp. BAV1]
 gi|146269781|gb|ABQ16773.1| hypothetical protein DehaBAV1_0182 [Dehalococcoides sp. BAV1]
          Length = 1039

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 23/199 (11%)

Query: 225 NHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
            ++   G+  K      L   G+ +E   +      + ++ +  +P  + +        +
Sbjct: 581 KYLRSYGTEKKQIERDFLETRGKLIEQNINWGNKDALALQLVNWNPFTNEASEWFDPDWM 640

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F   RF   ++NPP+G    K+   + KE                S    + + + 
Sbjct: 641 ----FGEDRFDIVIANPPWGVDLSKETKLLLKERIPEIDS-----STPNSFAYFVGMANR 691

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFR 400
            +KL          A +L  S L    A      I   LL  D  +   ++P +   F  
Sbjct: 692 ISKLN--------VAFILPDSILIKDYA-KTRKLIAPKLLSLDWYQN-TSVPENFRPFIY 741

Query: 401 TNIATYLWILSNRKTEERR 419
                 + I +N   E+ R
Sbjct: 742 VEHDVCVIIFNNENKEDIR 760


>gi|326563434|gb|EGE13699.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           12P80B1]
          Length = 497

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  ++    D   A    F F++   +L                +  P ++       ++
Sbjct: 246 IVRHMQELDDEDLAKLRQF-FAARNWQLFLQPKGADSVHRIDTEDARPTSLTVPPTGGLF 304

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + +  F            +P D   V+L+    +  D A    +      + D  CG G
Sbjct: 305 -YHLPNF------ELTYEFSPLDFTQVNLSVNQKMM-DLASSLLNLQKGERVLDLFCGLG 356

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F       V + G            G E   +             +        +K++ 
Sbjct: 357 NFSLVLARQVGESG---------FVVGVEGSEQMTERAKMNACANGIAH--TEFYAKDLT 405

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           Q  +         RF   L +PP    WE
Sbjct: 406 QDLSDQPWATGNNRFDALLIDPPRSGAWE 434


>gi|163755115|ref|ZP_02162236.1| putative methylase/helicase [Kordia algicida OT-1]
 gi|161325182|gb|EDP96510.1| putative methylase/helicase [Kordia algicida OT-1]
          Length = 1224

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 39/219 (17%)

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  ++++P+ G G  L  A                 +   Q  +  T          
Sbjct: 990  GMDHAASIFEPSAGNGLLLVGAAPKKTHVNEIDTSRKKSLAFQQFKKITTDNGA------ 1043

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                SD  R                     F   ++NPPF K    ++++ +KE    + 
Sbjct: 1044 HPFASDMERS--------------------FDAVVTNPPFAK---WEENSFDKERIVKKY 1080

Query: 322  GRFGPGLPKISDGSMLFLMHLANKLELPPNGG-GRAAIVLSSSPLFNGRAGSGESE-IRR 379
                 GL        L L HL + L L      GR  I++     F+ +    +      
Sbjct: 1081 FHNNRGL-----KQHLRLEHLMSGLALSTMKDHGRCGIIIMGHVYFDDQGFIAKYRPFFN 1135

Query: 380  WLLENDLIEAIVALPTDLFFRTN---IATYLWILSNRKT 415
            WL     ++AI+ + +   +        T L ++  RK 
Sbjct: 1136 WLYHYYHVDAILNMNSFKLYNKQGAVAKTMLILIGGRKA 1174


>gi|322378973|ref|ZP_08053383.1| hypothetical protein HSUHS1_0613 [Helicobacter suis HS1]
 gi|321148599|gb|EFX43089.1| hypothetical protein HSUHS1_0613 [Helicobacter suis HS1]
          Length = 1287

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           +   I+  P +        +Y     +  +   + +  F TP  +        L      
Sbjct: 448 DLKNIKEKPKSTQHYTQGQLY----LKNSANSRKSSGSFYTPEKITKELVKQALVG---- 499

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             ++  +   + D  CG+G FL ++++ V+    + + P +     QE +
Sbjct: 500 LNDANILNFKILDNACGSGAFLIESLHQVSQRALNGEFPSLKPLLEQEKQ 549


>gi|297583631|ref|YP_003699411.1| N-6 DNA methylase [Bacillus selenitireducens MLS10]
 gi|297142088|gb|ADH98845.1| N-6 DNA methylase [Bacillus selenitireducens MLS10]
          Length = 332

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 37/219 (16%)

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           + L +       ++ DP  G G  LT  +N              +     E +     + 
Sbjct: 112 NKLLEHDDNKEISVMDPAAGAGNLLTGVINQQTKP---------VKATAFEADETLANLA 162

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
                I+  +          ++   T+  +     +  Y +S+ P G  +  +  A E  
Sbjct: 163 FINSRIQGRD--------IKVRHEDTIKAE--DIGQSGYVISDLPVG--YYPNDSAAEGF 210

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
              GE            + S L    L  +       GG    ++      +  A     
Sbjct: 211 QLKGE-----------GNPS-LIHHLLIEQSIRHTEEGGYLFFLVPDHLFLSEHA----K 254

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           E++ ++ E+ +I AI+ LP  +F   +    L +L  +K
Sbjct: 255 ELQAYVNEHAVIYAIMQLPETMFKAKDHRKALLLLRRKK 293


>gi|291534511|emb|CBL07623.1| Restriction endonuclease S subunits [Roseburia intestinalis M50/1]
          Length = 536

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F  KRF    S P  G +          E KN     F               M     
Sbjct: 182 GFINKRFDLIFSCPNMGGR-------TLAEDKNFMCREFD--------------MVALEN 220

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L L  N GGR  I L     F   A    S++R+++  +  I+ I  LP      T I  
Sbjct: 221 LSLHLNSGGRLVITLPGRITF---ASGKVSDLRQFIQTSYTIKEIAELPEGSLEYTGIKV 277

Query: 406 YLWILSNRKTEE 417
           YL  + N + ++
Sbjct: 278 YLIDIENTRPDD 289


>gi|288800631|ref|ZP_06406089.1| DNA modification methylase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332844|gb|EFC71324.1| DNA modification methylase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 1170

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 78/254 (30%), Gaps = 54/254 (21%)

Query: 19  AEDLWGDFKHTDFGKVI---LP-FTLLRRLECALEPTRSAVREKYLAFGGSNID--LESF 72
            + L G+ K+      +   L     L+ L+        A  + +     + +   +E +
Sbjct: 192 CDFLTGNTKNN--RDYVKKLLGRLVFLQFLQKKGWMGVPASSKTWEGGDKAYMQKLVEHY 249

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
                           +TL  +   N +++ +             FD  +  +R      
Sbjct: 250 KDNERLLSDVLEPLFFNTLNESRPNNIVDTRLGKNIKIPYLNGGLFDKDALDSRNIDFPY 309

Query: 133 LY--KICKNFSGIELHPDT---------VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            Y  ++ + FS      D          +   ++ +I+E+L+       ++    F TP+
Sbjct: 310 SYFQELMEFFSEYNFTIDENDPDDAEVGIDPEMLGHIFENLLED-----NKDKGAFYTPK 364

Query: 182 DVVHLAT---------------------ALLLDPDDALFKESPGMIRTLY---------D 211
           ++V                          L+++       ++  +   +Y         D
Sbjct: 365 EIVQYMCKESIVQYLTTHAEEKLHNAIRKLIVEGIVCPELQTKVVANKIYDLLKSVKICD 424

Query: 212 PTCGTGGFLTDAMN 225
           P  G+G F   A+N
Sbjct: 425 PAIGSGAFPMGALN 438


>gi|331701789|ref|YP_004398748.1| hypothetical protein Lbuc_1431 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129132|gb|AEB73685.1| hypothetical protein Lbuc_1431 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 224

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  +  +DF TP  V  L   L                 T ++P  GTGG L +  N  
Sbjct: 63  SDRGKKKQDF-TPLSVSKLMVRLA------------DNGSTYFEPAAGTGGILINRWNSD 109

Query: 228 ADCGSHHKIPPILVPHG-QELEPETHAVCVAGMLIRRLES 266
               +     P    +  +EL        +  +LIR + +
Sbjct: 110 RMKTTPFDYLPSKYFYQVEELGDSAIPFLIFNILIRGMNA 149


>gi|317496319|ref|ZP_07954676.1| D-tyrosyl-tRNA(Tyr) deacylase [Gemella moribillum M424]
 gi|316913565|gb|EFV35054.1| D-tyrosyl-tRNA(Tyr) deacylase [Gemella moribillum M424]
          Length = 1714

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 51/216 (23%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + +P+ G G F+          G+          +G EL+  +  +              
Sbjct: 8   ILEPSMGIGNFI----------GNIPDEMNKSKFYGVELDSVSGRIGKL----------- 46

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                ++  Q   L +  F+   F   + N PFG+    D++                  
Sbjct: 47  --LYPESDIQIKGLEETSFSNNFFDVAIGNVPFGEYKVNDRE------------------ 86

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              +  + L   +   K       GG  A + SS  +        +  +RR+L       
Sbjct: 87  --YNKNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFL 139

Query: 389 AIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             + LP D F     T + + +  L  R +   R +
Sbjct: 140 GAIRLPNDTFKGVAGTEVTSDIIFLKKRDSVLERDE 175


>gi|241888969|ref|ZP_04776273.1| N-6 DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241864218|gb|EER68596.1| N-6 DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 1018

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 35/129 (27%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------------------------ILV 241
            + DP CG+G FL  A +++                                     I  
Sbjct: 458 KVIDPACGSGAFLIAAYDYLKKELDEINDRIADLKGRTQELFDGDEMYDASLENEYLIKC 517

Query: 242 PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSK--------DLFTGKRF 292
            +G +L PE+  +    + +R L +D P  +L  NI+ G+++++        ++F    F
Sbjct: 518 LYGVDLNPESVEISKLSLWLRTLTNDKPLTNLDDNIKSGNSITEFDFQEEFLEVFVKGGF 577

Query: 293 HYCLSNPPF 301
              + NPP+
Sbjct: 578 DVVIGNPPY 586


>gi|145588323|ref|YP_001154920.1| HemK family modification methylase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046729|gb|ABP33356.1| [protein release factor]-glutamine N5-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 283

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 30/201 (14%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LI +  F +   + A   + PR    L   + L     L       +  + D   G+G 
Sbjct: 71  YLIGKRGFHNIELQVAPGVLIPRAETELLVDIGLKEIARLTDNQ--KMVKVLDLGTGSGA 128

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               A+ H A           +     +   +  A+  +      LE + R   ++    
Sbjct: 129 IAL-ALTHEA---------SNISVTATDQSLDALAIARSNA--HYLELENRVCFAQGNWY 176

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSML 337
            +    D+     F   LSNPP+    +         H      RF P          + 
Sbjct: 177 EAISKNDV-----FDIILSNPPYIANHDP--------HLTQGDLRFEPLSALTDHSTGLT 223

Query: 338 FLMHLANKLELPPNGGGRAAI 358
            L  +    +   N  G  A+
Sbjct: 224 CLETIIFGAKAHLNTEGLLAV 244


>gi|251771370|gb|EES51950.1| type III restriction enzyme, res subunit [Leptospirillum
            ferrodiazotrophum]
          Length = 1628

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 102/355 (28%), Gaps = 58/355 (16%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMI 206
            D     V+ N+Y+   +    ++++      TP +VV                       
Sbjct: 842  DKSRQDVIRNLYDTFFQAAFPKLADRLGIVYTPVEVVDFIIKSADFALRKEFGVGLSDPG 901

Query: 207  RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
              + DP  GTG FL+  +                  H  EL    + +    +    L++
Sbjct: 902  VNILDPFAGTGTFLSRLIQSGIISPDRLPDKYREELHATELVLLAYYIASLNIESAFLQA 961

Query: 267  DPRRDLSKNIQQGSTLSK--------------------DLFTGKRFHYCLSNPPF----G 302
                     +  G T                       D          L NPP+    G
Sbjct: 962  SGESLPFPGMVLGDTFQMGEGGKSKMFPKFLEENNARADRQNQADIRVILGNPPYRANQG 1021

Query: 303  KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
               + +++   ++        +  G   ++  S+              N   +  ++   
Sbjct: 1022 DSNQNNQNLSYEKLDKSIRDTYAAGSTAVNKNSL--YDSYIRAFRWASNRIRKQGVICYV 1079

Query: 363  SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            +        + +   R+ L E                     T +++ + R     +G++
Sbjct: 1080 TNGGWIDGNTTDG-FRKILAEEF-------------------TSIYVFNLRGNARTQGEL 1119

Query: 423  QLINATDLWTSIRNEGKKRRIINDDQRRQ---------ILDIYVSRENGKFSRML 468
            +   A +++ S         ++  +  ++         I D Y+SRE  K ++++
Sbjct: 1120 RRKEAGNIFESGSRAPIAITLLVKNPEKKGPCEIHYHDIGD-YLSREE-KLAKVV 1172


>gi|213968073|ref|ZP_03396218.1| methylase [Pseudomonas syringae pv. tomato T1]
 gi|213927053|gb|EEB60603.1| methylase [Pseudomonas syringae pv. tomato T1]
          Length = 789

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 99/360 (27%), Gaps = 71/360 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             +L+R              + L  G  +++    ++  G       E+S    G  NT 
Sbjct: 100 LLVLKRF--------PMKDAEDLYHGVLDVEWHDHLEPEG---TIAVEFSGHGSGIDNTH 148

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                   +  D  +    +      I    +  L     +    ++L   ++  R    
Sbjct: 149 FGALKVKDAIVDKLRTPEGERPSVDKINPDLRVHLRLDRGEAILSLDLSGHSLHQRG--- 205

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
              + +++  + + E            +LA A+L+    A +         L DP CG G
Sbjct: 206 ---YRLQQGAAPLKE------------NLAAAILI---RAGWPRIAAEGGALADPMCGVG 247

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-------------VCVAGMLIRRL 264
            FL +A    AD   + K             P                 +      IR  
Sbjct: 248 TFLVEAGMIAADIAPNIKRERWGFSAWLGHVPTLWRKLHDEALVRAEAGLAKTPSWIRGY 307

Query: 265 ESDPR--------------RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           E+DPR               D  K  Q      +      +    + NPP+G++   +  
Sbjct: 308 EADPRLIQPGRNNIERAGLSDWIKVYQGEVATFEPRPDQNQKGLVICNPPYGERLGDEAS 367

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +      GE  R               L   A      P+ G R  I       F   A
Sbjct: 368 LLYLYQNLGERLR------------QACLNWEAAVFTGAPDLGKRMGIRSHKQYSFWNGA 415


>gi|160902977|ref|YP_001568558.1| hypothetical protein Pmob_1534 [Petrotoga mobilis SJ95]
 gi|160360621|gb|ABX32235.1| conserved hypothetical protein [Petrotoga mobilis SJ95]
          Length = 1120

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 19/306 (6%)

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             S+       F   ++NPP+ +  +K+   + K ++      F     +  D   LF  
Sbjct: 673 YFSEVFHQKGGFDVVIANPPYIQ-LQKNGGKLAKLYEKLNYETFA----RTGDIYALFYE 727

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L+      G    + S+  +   RAG GE    R        + ++ L   +F  
Sbjct: 728 RGIQLLK----DNGLLCFITSNKWM---RAGYGEKL--RNFFARYNPQILIDLGPGIFET 778

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYV 457
             + T + ++  +  E+    V L         I+ E KKR +I  D  +    I     
Sbjct: 779 ATVDTNILLIQKKPNEKNLNAVTLQRENHEPIDIKAELKKRGVILTDLTKDAWFIGSATE 838

Query: 458 SRENGKFSRMLD--YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +   K  ++              +   L  +FI+D      +  +    +     ++  
Sbjct: 839 QKLKEKIEQIGKPLKEWDVKIYYGIKTGLNEAFIIDSQKREEILNNCRDEEERRRTEAVI 898

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
             IL+    + Y Y WA  +V         +  K K +  FI     A      R +   
Sbjct: 899 KPILRGRDIKRYYYEWAGLWVIIIPAGWTNENRKNKKADEFIYEKFPALMDHLKRYEEKA 958

Query: 576 DVNGEW 581
               + 
Sbjct: 959 KKRDDQ 964


>gi|122692567|ref|NP_001073742.1| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Bos taurus]
 gi|122131726|sp|Q05B63|TRM11_BOVIN RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM11 homolog
 gi|115545443|gb|AAI22734.1| TRNA methyltransferase 11 homolog (S. cerevisiae) [Bos taurus]
 gi|296484230|gb|DAA26345.1| tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Bos taurus]
          Length = 460

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 24/128 (18%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GM 259
                ++DP  GTGG L  + +  A              +G +++  T H +  A     
Sbjct: 214 KKNDIVFDPFVGTGGLLIASAHFGA------------YVYGTDIDYNTVHGLGKASRKNQ 261

Query: 260 LIRRLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             R  + + R +L +   +                  G  F   +++PP+G +    +  
Sbjct: 262 KWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTG 321

Query: 312 VEKEHKNG 319
            +KE   G
Sbjct: 322 SQKEIPKG 329


>gi|114565597|ref|YP_752751.1| DNA modification methylase-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336532|gb|ABI67380.1| DNA modification methylase-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 481

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 32/182 (17%)

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           +   K        ++DP  GTG  L  A+ +  +              G EL PE  ++ 
Sbjct: 253 EEFIKLFTKPGDNVFDPMAGTGSTLIAALRNERNA------------IGVELSPEWASIG 300

Query: 256 VAGMLIRRLESDPRRDLSKNIQ--QGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKD 310
               L   L+     +  +  +  QG   + D      G  F Y +++PP+         
Sbjct: 301 Q-NRLNYELQPTLFGEPLQKAKMLQGDATNLDAIGQLNGVYFDYVVTSPPY----WSMLT 355

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE----------LPPNGGGRAAIVL 360
               E++     +  P         +  +    + L+             N GG   IV+
Sbjct: 356 NPGSENQRNRRNKNLPLTYSKDQNDLGNIQDYNDFLDKLVNVYDDVVKKLNSGGVITIVV 415

Query: 361 SS 362
            +
Sbjct: 416 KN 417


>gi|325995949|gb|ADZ51354.1| hypothetical protein hp2018_06581 [Helicobacter pylori 2018]
 gi|325997543|gb|ADZ49751.1| hypothetical protein hp2017_06571 [Helicobacter pylori 2017]
          Length = 1449

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 93/336 (27%), Gaps = 35/336 (10%)

Query: 68   DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            ++   +K         S      +      +N+++ IA   D       D         L
Sbjct: 784  NIHQSIKEEEALDMIISHIITKPIFDAIFGDNIQNPIAKALDKMVLKLSDLGLEGETKDL 843

Query: 128  EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +      K                  ++ N+Y    +    + SE      TP +VV   
Sbjct: 844  KNLYESVKT----EAARAKSQKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFI 899

Query: 188  TALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--G 244
                          +      T++DP  GTG F+   ++   D  S   +      H   
Sbjct: 900  LRATNGILKKHFNTDFNDKNITIFDPFTGTGSFIARLLSKENDLISDEALKEKFQNHLFA 959

Query: 245  QELEPETHAVCVAGML---------IRRLESDPRRDLSKNIQQ-GSTLSKDLFTGKRFH- 293
             ++   ++ + +  +          ++  ++    D    +++        LF   + + 
Sbjct: 960  FDIVLLSYYIALINITQAAQNRDSSLKNFKNIALTDSLDYLEEKNDKGVFPLFADLKENQ 1019

Query: 294  ------------YCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISD---GSM 336
                          + NPP+  G K E D +      K  +      G    +     + 
Sbjct: 1020 EIKTTMEKQNIRVIIGNPPYSSGAKSENDNNQNLSHPKLEKKVYETYGKNSTAKVGATTR 1079

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
              L+             G    V++ S + +  A  
Sbjct: 1080 DTLIQSIRMASDLLKDKGVLGFVVNGSFIDSKSADG 1115


>gi|297201826|ref|ZP_06919223.1| cholesterol oxidase [Streptomyces sviceus ATCC 29083]
 gi|297147975|gb|EFH28812.1| cholesterol oxidase [Streptomyces sviceus ATCC 29083]
          Length = 592

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 58/200 (29%), Gaps = 22/200 (11%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLES 102
            LE  R   RE       ++ DL++++       +      L      L          +
Sbjct: 35  VLEAGRRFTRET---LPRNSWDLKNYLWAPKLGMFGIQRIHLLGNVMVLAGAGVGGGSLN 91

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           Y  +     K  FED  +       E+    Y   +   G+ L+P   P  V        
Sbjct: 92  YANTLYVPPKPFFEDPQWRDITNWQEELKPYYDQARRMLGVRLNPTMTPSDVH------- 144

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++     +  G    M P  V         D +DA  K        + DP  G  G    
Sbjct: 145 LKAAAERMGVGDTFHMAPVGV------FFGDGEDAEGKRKAAPGEQVDDPYFGGAGPSRK 198

Query: 223 AMNHVADC--GSHHKIPPIL 240
           A     +C  G  H     L
Sbjct: 199 ACIECGECMTGCRHGAKNTL 218


>gi|262283738|ref|ZP_06061502.1| adenine-specific DNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262260584|gb|EEY79286.1| adenine-specific DNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 317

 Score = 37.8 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +    + +   L+      G A  +  +  L + ++      ++ WL +N  + A++ALP
Sbjct: 207 TYAHHLLMEQALKYLKVD-GYAIFLAPNHLLTSPQSD----LLKSWLKDNASLVAMIALP 261

Query: 395 TDLFFRTNIATYLWILSNRKT 415
             LF   + A  +++L  +K 
Sbjct: 262 EKLFASASQAKTVFVLQKQKN 282


>gi|237721111|ref|ZP_04551592.1| phage protein [Bacteroides sp. 2_2_4]
 gi|229449946|gb|EEO55737.1| phage protein [Bacteroides sp. 2_2_4]
          Length = 186

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 19/174 (10%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKIC---KNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           K I  D +    I    +A          +    I++  D +        Y+     F +
Sbjct: 2   KNILSDINVMLNITDSYQAPERIMNLLFGEEKERIKVFKDFLDYFKCDVSYDWFHEYFEN 61

Query: 169 EVSEGAED--FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           E ++   +    TP+ +  L + LL                  Y+PT GTGG L     +
Sbjct: 62  EHADRKNNKQDFTPKCLSTLVSKLLGSDTGVT-----------YEPTAGTGGMLISNWYN 110

Query: 227 VADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
             +  S   +K    L+  G EL  +T    +  + IR +        +   + 
Sbjct: 111 HRNSISFLDYKPNDHLIVCG-ELSDKTIPFLLFNLAIRGMSGVVFHGDTLKNEH 163


>gi|218263397|ref|ZP_03477517.1| hypothetical protein PRABACTJOHN_03203 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222777|gb|EEC95427.1| hypothetical protein PRABACTJOHN_03203 [Parabacteroides johnsonii
           DSM 18315]
          Length = 284

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 65/224 (29%), Gaps = 51/224 (22%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ V      +L D               + +P+ G G F+          GS    
Sbjct: 105 FYTPKTVTDTIADVLHD--------KKVHPNLVLEPSAGMGAFI----------GSVLSG 146

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            P       E +  T       ML             + I+       +     RF   +
Sbjct: 147 NPQAEVMAFEKDLLTGK-----MLGH-------LYPQQKIRTEGFEKIEKPFLNRFDLAI 194

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNGGG 354
           SN PFG     D    + E+ NG + +                +H    L+       GG
Sbjct: 195 SNIPFG-----DIAVFDPEYANGSVFKKIAARK----------VHTYFFLKGLDAVRDGG 239

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             A + S   L     G      R  +     + + + LP +LF
Sbjct: 240 IVAFITSQGVLNTESNGGT----RYMMTRKADLVSAIRLPNNLF 279


>gi|163813947|ref|ZP_02205341.1| hypothetical protein COPEUT_00100 [Coprococcus eutactus ATCC 27759]
 gi|158450817|gb|EDP27812.1| hypothetical protein COPEUT_00100 [Coprococcus eutactus ATCC 27759]
          Length = 385

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 25/148 (16%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ------------ELEPET 251
              R L DP CG+G F  +A    A               G+            E     
Sbjct: 190 NKDRVLVDPFCGSGTFPIEAAMIGAHIAPGMDREFTAQEWGKVCDKKIWYSAVDEANDLI 249

Query: 252 HAVCVAGMLIRRLESDPRR-----------DLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
                  +    L+SD  +           D   + QQ     KDL   K++ + ++NPP
Sbjct: 250 DRDVKMNIQGYDLDSDMVKCAMENAKAAGVDQHIHFQQRD--VKDLRNPKKYGFIITNPP 307

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +G++ E+ +   E     GE  R     
Sbjct: 308 YGERLEEKEALPELYRTIGESYRNLDDW 335


>gi|330507238|ref|YP_004383666.1| hypothetical protein MCON_1119 [Methanosaeta concilii GP-6]
 gi|328928046|gb|AEB67848.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 1345

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 37/149 (24%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-------------TLYDPTCGT 216
             +    F TP+ +V       L+P      E   M                + DP  G+
Sbjct: 498 ERKATGSFYTPQYIVKYIVKNTLEPLIKPMMEEASMDADLRTDLLRKLLSIKVLDPAMGS 557

Query: 217 GGFLTDAMNHVADCGSHHKIPPILV-----------------------PHGQELEPETHA 253
           G FL +A +++A    H +                              +G +L P    
Sbjct: 558 GHFLVEATDYIAREIIHAREIARQEDEDSDAVAENDIHWARREVVRNCIYGVDLNPMAVE 617

Query: 254 VCVAGMLIRRLESD-PRRDLSKNIQQGST 281
           +    + ++ + S+ P   L  +++ G++
Sbjct: 618 LAKLSLWLKTVASNKPLSFLDHHLRCGNS 646


>gi|293364550|ref|ZP_06611273.1| adenine-specific methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|307702548|ref|ZP_07639501.1| hypothetical protein SMSK23_0388 [Streptococcus oralis ATCC 35037]
 gi|291316962|gb|EFE57392.1| adenine-specific methyltransferase [Streptococcus oralis ATCC
           35037]
 gi|307623894|gb|EFO02878.1| hypothetical protein SMSK23_0388 [Streptococcus oralis ATCC 35037]
          Length = 317

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 84/259 (32%), Gaps = 44/259 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y+ L+ + G      A    TP  +        L     + +       ++ +   G G 
Sbjct: 70  YQFLLMKAGQTEPLQANHQFTPDVIS-------LLLVLVVEELLHKEEISILEIGSGMGI 122

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +A    +          G E++     +  +   +  L++           Q
Sbjct: 123 LGATFLTSLAKKVDYL---------GVEVDDLLIDLAASMADVIGLQA--------GFVQ 165

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  +   +         +S+ P G               +    R+     +  + +   
Sbjct: 166 GDAVRPQMLKES--DVVISDLPVG-----------YYPDDAIASRYQVASSQ--EHTYAH 210

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            + +   L+   +  G A  +  S  L + ++      ++ WL +   + AI+ALP D+F
Sbjct: 211 HLLMEQGLKYLKSD-GYAIFLAPSDLLTSPQSD----LLKGWLKDEVSLAAIIALPEDIF 265

Query: 399 FRTNIATYLWILSNRKTEE 417
              + A  +++L  +  +E
Sbjct: 266 STASQAKSIFVLQKKGDKE 284


>gi|254520298|ref|ZP_05132354.1| modification methylase [Clostridium sp. 7_2_43FAA]
 gi|226914047|gb|EEH99248.1| modification methylase [Clostridium sp. 7_2_43FAA]
          Length = 587

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 18/116 (15%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           T +L++   ++  E   +   + D   G+G       N+                   + 
Sbjct: 400 TEILVEEVLSIINEEDELN--VCDLCSGSGAIGISIANYRKKINVEE----------IDF 447

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
                 V    ++   LES  +   S        L + +  GK++   +SNPP+ K
Sbjct: 448 YEVPEKVTKKNIIKHGLESRVKFIKS------DLLKEPINQGKKYDVIVSNPPYIK 497


>gi|326202287|ref|ZP_08192156.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium papyrosolvens DSM 2782]
 gi|325987405|gb|EGD48232.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium papyrosolvens DSM 2782]
          Length = 284

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 17/114 (14%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           T +L++    L K+S      + D   G+G       +   +                ++
Sbjct: 97  TEVLVEKVIELAKKSSNAGLKVLDMCTGSGCIAVSIAHFCPES----------SIVACDI 146

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             E   V  A   +  +++            G      L    +F + +SNPP+
Sbjct: 147 SEEAIKVAKANSDLNGVQNRVE------FFCGDLFEA-LKGSYKFDFIVSNPPY 193


>gi|284036876|ref|YP_003386806.1| type II restriction enzyme, methylase subunit [Spirosoma linguale
           DSM 74]
 gi|283816169|gb|ADB38007.1| type II restriction enzyme, methylase subunit [Spirosoma linguale
           DSM 74]
          Length = 918

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVA 257
            ++DP CG+G FL  A  H+ +                        G EL   +  +   
Sbjct: 347 RVFDPACGSGNFLVIAYKHMREIEHEINKRRGETERPTDIPLTNFRGIELRDFSAEIARL 406

Query: 258 GMLI 261
            ++I
Sbjct: 407 ALII 410


>gi|332213222|ref|XP_003255719.1| PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog
           [Nomascus leucogenys]
          Length = 463

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L    +  A              +G +++  T H +  A       R
Sbjct: 217 DIVFDPFVGTGGLLIACAHFGA------------YVYGTDIDYNTVHGLGKATRKNQKWR 264

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 265 GPDENIRANLRQYGLEKHYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 324

Query: 315 EHKNG 319
           E   G
Sbjct: 325 EIPKG 329


>gi|28373198|ref|NP_783835.1| putative YeeA protein [Lactobacillus fermentum]
 gi|28273041|emb|CAD59898.1| putative YeeA protein [Lactobacillus fermentum]
          Length = 932

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 80/573 (13%), Positives = 154/573 (26%), Gaps = 106/573 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I+    L   + +    +  + + ++       D+   +           E     L   
Sbjct: 214 IVRLVFLLYADDSNLFGKEDIFQAFIERREP-RDIRRDLSELFKVLDQPEEQRDPYLDDE 272

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
               N  +Y+         +F D    + I       L   I ++ +G       +   +
Sbjct: 273 F---NQFAYVNG------GMFSD---ENVIIPQFTDELKRLIVED-AGRGFDWSGISPTI 319

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH-----LATALLLDPDDALFKESPGMIR-- 207
              ++E  +     E         T  + +H     L    L D  D +        R  
Sbjct: 320 FGAVFESTL---NPETRRSGGMHYTSIENIHKVIDPLFLNDLHDEFDKIQNMGNRRQRVT 376

Query: 208 ------------TLYDPTCGTGGFLTDAMNHVADCGSH------------------HKIP 237
                         +DP CG+G FLT+    +    +                       
Sbjct: 377 RAKAFRDKLGKLKFFDPACGSGNFLTETYLSLRKMENECLRIIVGNQGALALTDESEPKV 436

Query: 238 PILVPHGQELEPETHAVCVAGMLIRR-------------LESDPRRDLSKNIQQGSTLSK 284
            I   +G E+     +V    M I                +     D + +I +G+ L  
Sbjct: 437 KIQNFYGIEINDFAVSVARTAMWIAESQMWEQTKDITFANKDFLPLDSNDSIYEGNALRM 496

Query: 285 DLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           D     +     Y + NPPF            KE K      F     K      +    
Sbjct: 497 DWNDIVKPYELDYIMGNPPF-----VGYSLQTKEQKQDIKQEFFKYTDKYGKFDYVS-GW 550

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
                +   N   +   V + S +   +A     EI + L  +  I          F   
Sbjct: 551 YIKGAKYIQNSTIKVGFVSTDSIIQGEQAP----EIWKVLFNDFHI----------FINY 596

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              ++ W  +N    + +  V ++  +           +++II+     Q    Y+   +
Sbjct: 597 GYRSFEW--NNEAANKAKVDVVIVGFSTKEDKNPTIYDEQKIISAKHINQ----YMYDSD 650

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL---SPLHQSFWLDI 518
             F           R+     P   +      G A + +    ++L    P  + F   +
Sbjct: 651 NIF-------IDTTRKYIEAMPKMKTGNRPADGGALILSPKEAKELVNEEPQSKQFIKKL 703

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                     Y +    V  + K   +  L +K
Sbjct: 704 TGSKEFITGKYRYCLWLVNVTPKQLRSMPLVLK 736


>gi|281338093|gb|EFB13677.1| hypothetical protein PANDA_003134 [Ailuropoda melanoleuca]
          Length = 415

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 24/125 (19%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVA---GMLIR 262
             ++DP  GTGG L  + +  A              +G +++  T H +  A       R
Sbjct: 172 DIVFDPFVGTGGLLIASAHFGA------------YVYGTDIDYNTVHGLGKASRKNQKWR 219

Query: 263 RLESDPRRDLSKNIQQG--------STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + + R +L +   +                  G  F   +++PP+G +    +   +K
Sbjct: 220 GPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQK 279

Query: 315 EHKNG 319
           E + G
Sbjct: 280 EIQKG 284


>gi|323339347|ref|ZP_08079634.1| adenine-specific methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323093236|gb|EFZ35821.1| adenine-specific methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 335

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 44/322 (13%)

Query: 108 SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLI 163
            D   A+ E+FD   +     +E      K     + I   +  D +       + +  +
Sbjct: 26  DDCLDALIENFDNLLNDGKVHVEDGIPDEKTALKLAEIYRAVRLDEISTEDRRLLLQLSL 85

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
                +    A   MTP  +  L   LL    +   + +        D   GTG      
Sbjct: 86  LTVYRKEKIQANHQMTPDSIGFLTAYLLQQVYEKKDETN------FLDLCVGTGNLAAVV 139

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           +N + + G        +   G + +     +      +  L+         N+     L 
Sbjct: 140 INALKNNG-----FKNIHGFGIDNDDTLLTIASIESQLCDLD--------LNLYHQDALD 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           K L    +    +S+ P G  W    +  E           G         S +  + + 
Sbjct: 187 KSLIP--QADVIVSDLPVG--WYPLDERAE-----------GYETHAKEGHSFVHFLLIE 231

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+    GG    + L  S +F          + +++ +N  +++++ LP  +F     
Sbjct: 232 QALDNLKEGG--IGMFLIPSSMFESEES---LPLLKFIQKNGYLQSLINLPGAMFASKKS 286

Query: 404 ATYLWILSNRKTEERR-GKVQL 424
              + IL  +  + ++   V L
Sbjct: 287 EKAILILQKKGAKSKQANPVLL 308


>gi|213026940|ref|ZP_03341387.1| hypothetical protein Salmonelentericaenterica_32695 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 203

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 18/189 (9%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
           GS     N  +  A F + +  + +   FS  I          +I    + I L     P
Sbjct: 8   GSNIYGFNQLAIQAGFIEKSIMLTDRHKFS--IEEKFYNQFDTEIIDTANLISLEIQKQP 65

Query: 152 -DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V + I+E        +  E    F+TP  +    +  +    D        +   + 
Sbjct: 66  LTDVFNRIFEDC--YLTGKKGEWLGQFLTPNRLAEAISRFVGWEKD--------IKYNIG 115

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA----GMLIRRLES 266
           D   GTG  L   +  +     +  +  I + +  E++P    + +A     M    L+ 
Sbjct: 116 DCCAGTGSLLFPLLREIHSKEGYEGVQKIELLY-NEIDPLMAQLFMAQILTNMTYHNLDF 174

Query: 267 DPRRDLSKN 275
                   N
Sbjct: 175 KSLHVYIGN 183


>gi|28211851|ref|NP_782795.1| modification methylase bstVI [Clostridium tetani E88]
 gi|28204293|gb|AAO36732.1| modification methylase bstVI [Clostridium tetani E88]
          Length = 601

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 58/416 (13%), Positives = 132/416 (31%), Gaps = 56/416 (13%)

Query: 161 HLIRRFGSEV-SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            LIR F      +      T  ++ +      +  +D +          + DP+ G G  
Sbjct: 61  ELIRDFYILNIEKKNGVVYTTEEISNYLVKNTIKKEDIINNPYI----KIIDPSSGCGNI 116

Query: 220 L-----------TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +             +++ +    +       +  H  +       +    + I  ++   
Sbjct: 117 IFAIFDYLINIYVKSLDEINKKNNLELSMENIKNHIVKNNLHVIDIDNFALKILVIDFFY 176

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           + ++  +  Q      D   G +F+  + NPP+          +EKE+       +G   
Sbjct: 177 KNNIIFSNIQNKDFLTDDIEG-KFNIFIGNPPYIGH-----KDIEKEYFKNIKENYGEIY 230

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              SD S  F     +K         +   + S   L +         +R+++  N  I 
Sbjct: 231 INKSDLSYCFFKGSFDK----GKDNCKITFITSRYFLESESG----KNLRKYIANNFYIN 282

Query: 389 AIVAL----PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            IV      P   F    I   +  L+ +            +  +++ + + E  K    
Sbjct: 283 RIVDFYGIRP---FKNVGIDPCIIFLTKK------------DKNNIYNNRKVEILKPSRS 327

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           N  +   I  I   +E      + +   F   R  ++    ++ +         +  I+ 
Sbjct: 328 NYKKEEFIKSIIYDKEVKHRGFLKEAEEFKKDRWLLIDNKELNILKKIEN----KCKISL 383

Query: 505 RKLSPLHQSFWLDILKPMM---QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
           +++   +Q       K  +   + I   G  ++ +K  IKS+  K   +++   F+
Sbjct: 384 KEICNSYQGIISGCDKAFIVNREDIQNKGLEKNIIKPWIKSSHIKRSGIESKDMFL 439


>gi|319639900|ref|ZP_07994629.1| hypothetical protein HMPREF9011_00226 [Bacteroides sp. 3_1_40A]
 gi|317388564|gb|EFV69414.1| hypothetical protein HMPREF9011_00226 [Bacteroides sp. 3_1_40A]
          Length = 860

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 37/164 (22%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGA----EDFMTPRDVVHLATA---------------- 189
           +   ++  ++E+L+  +  E  E A      F TPR++V                     
Sbjct: 404 LDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVKYMVDESLIAYLGESDFNRSL 463

Query: 190 -------LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV- 241
                   +   ++            + DP CG+G F    +N +A+     ++   +  
Sbjct: 464 FAPNFKYEVAHVEEYKSIAEKLKAVKVLDPACGSGAFPMGLLNRMAEVLQRIELNTNVYE 523

Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
                     +G +++     +      I  +    R     N 
Sbjct: 524 QKLAIIENCLYGSDIQSIAAQITKLRFFISLIVDCERDASKPNF 567


>gi|301165961|emb|CBW25535.1| putative methyltransferase [Bacteriovorax marinus SJ]
          Length = 299

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 29/235 (12%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--------HPDTVP 151
           L +Y+ +F  + K    +     TI RL+     Y   K  +  +L        H + + 
Sbjct: 6   LGTYLENFFSDKKERLSELYPGLTINRLKDELTQYARQKKINVDDLFSSRYIPSHTNPIT 65

Query: 152 DR----VMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +     V     E++  R  F     + +E+ + PR    +             K S   
Sbjct: 66  NYFNSLVKGYPLEYIRGRAHFYKSEFDVSENVLIPRSETEILVETASSFLRDWMKMSDER 125

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           +  + D   G+G  +   +  +         P  L     ++  +   V        R  
Sbjct: 126 L-RILDIGTGSGAIIISLLQEM---------PRPLEAFATDISKDALEVARRNYFNLR-- 173

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                    +++   T   +    ++FH  +SNPP+ KK E D+D V  +  N E
Sbjct: 174 --YTIPRESSLRLICTDRMNDLDQEKFHLIVSNPPYIKKRE-DRDFVHHQVDNYE 225


>gi|78778439|ref|YP_396551.1| putative RNA methylase [Prochlorococcus marinus str. MIT 9312]
 gi|78711938|gb|ABB49115.1| putative RNA methylase family UPF0020 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 374

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 58/391 (14%), Positives = 116/391 (29%), Gaps = 63/391 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDL--WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M     +   L  ++   AE++   G F    + + I         EC  E         
Sbjct: 1   MKVVASAPQGLEKYL---AEEISNLGGFNINTYKRFI-------NFECDYETFYRVHFYS 50

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSDNAKAIFED 117
            LAF     ++ SF      S Y     S + L   + +      +    S  +   F  
Sbjct: 51  RLAFRFY-REIASFNCYDKQSLYEGVRDSFNWLDWLHYKKTFNVQVTGRTSSLSHTHFSA 109

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +  ++I  L++A    +   +    +       +   + I   L     S    G    
Sbjct: 110 LEVKNSITDLQQAVWNKRSNISLDDPDFIIHLHLNNNKAII--SLQSSLESLHKRGYRPA 167

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-------- 229
           +    +     + L++      K        L D  CG+G FL +A+N   +        
Sbjct: 168 VGNAPLKENLASGLINMTQWNGKVP------LIDIMCGSGTFLIEAVNQFIEVPINIHQV 221

Query: 230 --------------CGSHHKIPPILVPH-------GQELEPETHAVCVAGMLIRRLESDP 268
                             +K    ++ +       G E+  +        + +  LE+  
Sbjct: 222 YLFENWLDFRKDIYLNEKNKAKNKIINYEKLPKIIGCEINKKVFEQAKVNISLAGLENYI 281

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV-EKEHKNGELGRFGPG 327
               +  ++        L         + NPP+GKK   + + +   E     L     G
Sbjct: 282 ELINNDFLE--------LQLKFTPGIIICNPPYGKKLGDENELICLYEQMGTFLKNNFSG 333

Query: 328 LPK---ISDGSMLFLMHLANKLELPPNGGGR 355
                   +  +   + + + L++P + GG 
Sbjct: 334 WEFWLLSGNPKLTKYLKMKSSLKIPVSNGGI 364


>gi|119510910|ref|ZP_01630033.1| ATP-dependent helicase HEPA [Nodularia spumigena CCY9414]
 gi|119464438|gb|EAW45352.1| ATP-dependent helicase HEPA [Nodularia spumigena CCY9414]
          Length = 1496

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 14/136 (10%)

Query: 290  KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
              F  C+ NPP+ +  +  K   EK      L R      K +D    F+    N L+  
Sbjct: 1117 DGFDICIGNPPYVRPHKLSKVFKEK------LWRLYSSFVKKADLYSCFVEKTLNILK-- 1168

Query: 350  PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
                G  + +LS+  L          ++R  LL+N  ++ I+    D+F    + T ++ 
Sbjct: 1169 --KTGIGSFILSNGFLRLDS----FEKLRILLLQNTSVDLIIDFEDDVFESAIVKTCIFS 1222

Query: 410  LSNRKTEERRGKVQLI 425
             +N  T+ ++ K+  I
Sbjct: 1223 FTNTYTKNKKIKIARI 1238


>gi|307637357|gb|ADN79807.1| hypothetical protein hp908_0680 [Helicobacter pylori 908]
          Length = 1622

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 93/336 (27%), Gaps = 35/336 (10%)

Query: 68   DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
            ++   +K         S      +      +N+++ IA   D       D         L
Sbjct: 784  NIHQSIKEEEALDMIISHIITKPIFDAIFGDNIQNPIAKALDKMVLKLSDLGLEGETKDL 843

Query: 128  EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +      K                  ++ N+Y    +    + SE      TP +VV   
Sbjct: 844  KNLYESVKT----EAARAKSQKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFI 899

Query: 188  TALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH--G 244
                          +      T++DP  GTG F+   ++   D  S   +      H   
Sbjct: 900  LRATNGILKKHFNTDFNDKNITIFDPFTGTGSFIARLLSKENDLISDEALKEKFQNHLFA 959

Query: 245  QELEPETHAVCVAGML---------IRRLESDPRRDLSKNIQQ-GSTLSKDLFTGKRFH- 293
             ++   ++ + +  +          ++  ++    D    +++        LF   + + 
Sbjct: 960  FDIVLLSYYIALINITQAAQNRDSSLKNFKNIALTDSLDYLEEKNDKGVFPLFADLKENQ 1019

Query: 294  ------------YCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISD---GSM 336
                          + NPP+  G K E D +      K  +      G    +     + 
Sbjct: 1020 EIKTTMEKQNIRVIIGNPPYSSGAKSENDNNQNLSHPKLEKKVYETYGKNSTAKVGATTR 1079

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
              L+             G    V++ S + +  A  
Sbjct: 1080 DTLIQSIRMASDLLKDKGVLGFVVNGSFIDSKSADG 1115


>gi|219129989|ref|XP_002185158.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403337|gb|EEC43290.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 716

 Score = 37.4 bits (85), Expect = 7.0,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 8/162 (4%)

Query: 457 VSRENGKFSRMLDY--RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           V+RE  + S++L    +    + I+++R L      +    A ++ +    +       +
Sbjct: 393 VNRETLQESKILSVIKKKLVRKAIEMIRQLAKDSEDEGQSEAEIDEEGNVIETEEKDSRY 452

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
                K            E    + +K    +T K       + A+ +           +
Sbjct: 453 IAFYRKFSPNIKLGVVEDEPNRGKLMKLLRFQTSKSDGKMISLAAYFDNMKEWQEEIYIL 512

Query: 575 TDVNGEWIPDTNL------TEYENVPYLESIQDYFVREVSPH 610
              + E I  +         + E +   +SI +Y +R+V  H
Sbjct: 513 GGASAEEIEKSPFLETFRDKDVEVIYLTDSIDEYMLRQVRDH 554


>gi|291547768|emb|CBL20876.1| N-6 DNA Methylase [Ruminococcus sp. SR1/5]
          Length = 937

 Score = 37.4 bits (85), Expect = 7.1,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 80/278 (28%), Gaps = 64/278 (23%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP----RDVVH-LATALLLDPD 195
           +  +     +   +   ++E  +     E         T       V+  L    L    
Sbjct: 309 ASEDFDWSDISPTIFGAVFESTL---NPETRRSGGMHYTSISNIHKVIDPLFLDKLQTEF 365

Query: 196 DALFK--------------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--- 238
             + K              ++   + T  DP CG+G FLT+    +    +         
Sbjct: 366 HEILKIQVQRTKVKRLDEFQNKLALLTFLDPACGSGNFLTETYLSLRRLENEVIREKVGG 425

Query: 239 --------------ILVPHGQELEPETHAVCVAGM-------------LIRRLESDPRRD 271
                         I   +G E+      V    +             ++     D    
Sbjct: 426 QMTLGDVHNPIRVSIQQFYGIEINDFAVTVAKTALWIAESQMMEETKNIVYGFNDDFLPL 485

Query: 272 LSK-NIQQGSTLSKDLFT---GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGP 326
            +  NI +G+ L  D  +    K   Y + NPPF G +W         E +  ++     
Sbjct: 486 KTYVNIAEGNALKIDWNSVVLAKSLSYIMGNPPFVGARWMG-------EKQKEDVADIFA 538

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           G   + +   +   +      +  N   RAA+V ++S 
Sbjct: 539 GWKSVGNLDYVSCWYKKASDYMKENINIRAALVSTNSI 576


>gi|326578005|gb|EGE27869.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 497

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  ++    D   A    F F++   +L                +  P ++       ++
Sbjct: 246 IVRHMQELDDEDLAKLRQF-FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLF 304

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + +  F            +P D   V+L+    +  D A    +      + D  CG G
Sbjct: 305 -YHLPNF------DLTYEFSPLDFTQVNLSVNQKMM-DLASSLLNLQKGERVLDLFCGLG 356

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F       V + G            G E   +             +        +K++ 
Sbjct: 357 NFSLVLARQVGESG---------FVVGVEGSEQMTERAKMNACANGIAH--TEFYAKDLT 405

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           Q  +         RF   L +PP    WE
Sbjct: 406 QDLSDQPWATGNNRFDALLIDPPRSGAWE 434


>gi|326561885|gb|EGE12220.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           7169]
 gi|326563319|gb|EGE13586.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           46P47B1]
 gi|326565973|gb|EGE16134.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           103P14B1]
 gi|326568893|gb|EGE18962.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC1]
 gi|326575378|gb|EGE25303.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           101P30B1]
          Length = 497

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  ++    D   A    F F++   +L                +  P ++       ++
Sbjct: 246 IVRHMQELDDEDLAKLRQF-FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLF 304

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + +  F            +P D   V+L+    +  D A    +      + D  CG G
Sbjct: 305 -YHLPNF------DLTYEFSPLDFTQVNLSVNQKMM-DLASSLLNLQKGERVLDLFCGLG 356

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F       V + G            G E   +             +        +K++ 
Sbjct: 357 NFSLVLARQVGESG---------FVVGVEGSEQMTERAKMNACANGIAH--TEFYAKDLT 405

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           Q  +         RF   L +PP    WE
Sbjct: 406 QDLSDQPWATGNNRFDALLIDPPRSGAWE 434


>gi|323476892|gb|ADX82130.1| hypothetical protein SiH_0775 [Sulfolobus islandicus HVE10/4]
          Length = 319

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 31/200 (15%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           +P     + D  CG G F+   +   ++ G       +    G E++ +           
Sbjct: 8   NPSPNARVLDAGCGEGVFIEAIIKWYSERG-----IELPEIVGVEIDHKLAERAR----- 57

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNG 319
              +        K I+      K+   G  F Y +SNPP+    K   +K  + K     
Sbjct: 58  ---KKFNNISKVKIIEDDFLTVKEEKLGGEFDYIISNPPYISYEKISPEKRKLYKSIFEA 114

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            +GRF        D  MLF     N L+     GGR   +     L+   AG     + R
Sbjct: 115 AVGRF--------DIYMLFFERALNLLK----PGGRMVFLTPEKYLYVISAGKLRKLLSR 162

Query: 380 WLLEN----DLIEAIVALPT 395
           + +      +  E I+A PT
Sbjct: 163 YRVVEIELINAFEGILAYPT 182


>gi|289706368|ref|ZP_06502726.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Micrococcus luteus SK58]
 gi|289556863|gb|EFD50196.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Micrococcus luteus SK58]
          Length = 300

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 21/124 (16%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
             PR    L    ++         +      + D   G+G             G      
Sbjct: 96  FIPRPETELLVETVV-----ADLAARPTADVVVDLCTGSGAIAAAVAAWGEARG------ 144

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L     EL+P         + +R ++          ++QG  L        R    +S
Sbjct: 145 RPLAVAAVELDPTAADWARRNLALRGVD----------LRQGDALVACPDLEGRVDVVVS 194

Query: 298 NPPF 301
           NPP+
Sbjct: 195 NPPY 198


>gi|269976468|ref|ZP_06183453.1| modification methylase PstI [Mobiluncus mulieris 28-1]
 gi|269935269|gb|EEZ91818.1| modification methylase PstI [Mobiluncus mulieris 28-1]
          Length = 498

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIAKMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                L   K+F   + NPP+GK   KD   +
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRI 159


>gi|326576535|gb|EGE26443.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           CO72]
          Length = 473

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  ++    D   A    F F++   +L                +  P ++       ++
Sbjct: 222 IVRHMQELDDEDLAKLRQF-FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLF 280

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + +  F            +P D   V+L+    +  D A    +      + D  CG G
Sbjct: 281 -YHLPNF------DLTYEFSPLDFTQVNLSVNQKMM-DLASSLLNLQKGERVLDLFCGLG 332

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F       V + G            G E   +             +        +K++ 
Sbjct: 333 NFSLVLARQVGESG---------FVVGVEGSEQMTERAKMNACANGIAH--TEFYAKDLT 381

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           Q  +         RF   L +PP    WE
Sbjct: 382 QDLSDQPWATGNNRFDALLIDPPRSGAWE 410


>gi|307270190|ref|ZP_07551504.1| hypothetical protein HMPREF9498_02303 [Enterococcus faecalis
           TX4248]
 gi|306513467|gb|EFM82085.1| hypothetical protein HMPREF9498_02303 [Enterococcus faecalis
           TX4248]
          Length = 252

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 18/129 (13%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +I+       +   +  TP+ +V     +       + +    +  T  +P  G G F
Sbjct: 3   EEIIK--SKLRVQKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAF 55

Query: 220 LTDAMNHVADCGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDP 268
           L   +    +  S      ++             +G EL  +   +CV  M  +  ++  
Sbjct: 56  LLVILERKLNMVSKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYK 115

Query: 269 RRDLSKNIQ 277
            +    N +
Sbjct: 116 EQVEHHNGE 124


>gi|157159792|ref|YP_001457110.1| putative restriction enzyme [Escherichia coli HS]
 gi|157065472|gb|ABV04727.1| putative restriction enzyme [Escherichia coli HS]
          Length = 1205

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 35/187 (18%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLA 343
               +R+   ++NPP+                NG+L  F       S   +  +F+ H  
Sbjct: 496 WILAQRYDAVVANPPYMGGKGM----------NGDLKEFAKKQFPDSKSDLFAMFMQHAF 545

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           + L+      G  A V   S +F     S    +R WLL+N     +  L    F + + 
Sbjct: 546 SLLK----ENGFNAQVNMQSWMFL----SSYEALRGWLLDNKTFITMAHLGARAFGQISG 597

Query: 403 --IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             + T  W++ N  +   +  V              E KK  ++N       ++ + +  
Sbjct: 598 EVVQTTAWVIKNNHSGFYK-PVFF-----RLVDDNEEHKKNNLLNR------MNCFKNTL 645

Query: 461 NGKFSRM 467
              F ++
Sbjct: 646 QNDFKKI 652


>gi|307701808|ref|ZP_07638822.1| Eco57I restriction endonuclease [Mobiluncus mulieris FB024-16]
 gi|307613066|gb|EFN92321.1| Eco57I restriction endonuclease [Mobiluncus mulieris FB024-16]
          Length = 498

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIARMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                L   K+F   + NPP+GK   KD   +
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRI 159


>gi|294155434|ref|YP_003559818.1| hypothetical protein MCRO_0145 [Mycoplasma crocodyli MP145]
 gi|291600020|gb|ADE19516.1| conserved hypothetical protein [Mycoplasma crocodyli MP145]
          Length = 476

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 110/379 (29%), Gaps = 40/379 (10%)

Query: 230 CGSHHKIPPILVPHGQEL----EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           CG    +  I+  + +E                  I  +E D              + + 
Sbjct: 47  CGDGRFLEEIVKTYIKEFFKIDNDLIKLKNQLEHFIHGIEIDLEECKKCINNLNLIIKEY 106

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LF 338
                 +   +++      +    D V        +  F     KI +          LF
Sbjct: 107 NIDNVNWDIIVADTLDTNIYTGKMDFVLGNPPYVRVHNFDDRFSKIKNKRFTKKGMTDLF 166

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDL 397
           ++     L +    G    I    S +FN  AG    E R+++++  L+++++      +
Sbjct: 167 ILFYEIGLNMLNEKGVLCYIT--PSSIFNSFAG---LEFRKFIIQKKLLKSVIDYKHYQV 221

Query: 398 FFRTNIATYLWILSNRKTEERRG-------------------KVQLINATDLWTSIRNEG 438
           F   +  T +  L    T+E                          IN +  +       
Sbjct: 222 FESVSTYTTILKLDKNNTDENINYFSYNDHNQQYDFIDKLEYNDFFINNSFYFQKKEKLV 281

Query: 439 KKRRIINDDQRRQILDIYVSRE---NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             ++IIN + ++  +++        +  F +   +         VL+  R  +       
Sbjct: 282 IFKKIINCNIKQNNINVKNGFATLCDDIFIK-DHFEFKSKHIFNVLKSSRKKWKKIIFPY 340

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
            +  A IT+  L    Q +       ++ + +  G  + +     ++      +  +  +
Sbjct: 341 NKEGALITFECLEKELQDYLTINKDRLLNRSFDKGQNKWYAFGRSQAINDFWKEKISINN 400

Query: 556 FIVAFINAFGRKDPRADPV 574
            I    N         + V
Sbjct: 401 LIKTKENLKIELLKSGEGV 419


>gi|227874931|ref|ZP_03993083.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
 gi|227844508|gb|EEJ54665.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
          Length = 498

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIAKMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                L   K+F   + NPP+GK   KD   +
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRI 159


>gi|67922009|ref|ZP_00515525.1| similar to Type II restriction enzyme methylase subunits
           [Crocosphaera watsonii WH 8501]
 gi|67856225|gb|EAM51468.1| similar to Type II restriction enzyme methylase subunits
           [Crocosphaera watsonii WH 8501]
          Length = 779

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 24/119 (20%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVAD----------CGSHHKIPPIL-------VPHGQELEP 249
             + DP CG+G FL  A   +                 K   ++         +G ++ P
Sbjct: 355 YKVLDPACGSGNFLYVAYQELKRIEQLLLNKIYQRRKSKNEQMIMGFVTLKQFYGMDINP 414

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPF 301
               +    ++I R  +  + +L++N     +L  ++           +    + NPPF
Sbjct: 415 FAVELARVTLMIARKVAIDKFELTENYLPLDSLDDNILCQDALFNDWVKADAIIGNPPF 473


>gi|118124915|ref|XP_001236019.1| PREDICTED: similar to putative RNA methylase, partial [Gallus
           gallus]
          Length = 325

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 33/112 (29%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +YDP  GTGG L  + +  A           +   G+              +   
Sbjct: 156 KPNDIVYDPFVGTGGLLISSAHFGAYVCGTDIDYNTIHGLGKASRKNQKWRGPDENIRAN 215

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           L          +     +       G  F   +++PP+G +    +   +KE
Sbjct: 216 LRQYGLEKYYLDALVSDSSRPIWRKGTLFDAIITDPPYGIREATRRTGSQKE 267


>gi|306818256|ref|ZP_07451986.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35239]
 gi|304648995|gb|EFM46290.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35239]
          Length = 498

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 14/152 (9%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIAKMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                L   K+F   + NPP+GK   KD   +
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRI 159


>gi|251792739|ref|YP_003007465.1| protein-(glutamine-N5) methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534132|gb|ACS97378.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Aggregatibacter aphrophilus NJ8700]
          Length = 299

 Score = 37.4 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 24/180 (13%)

Query: 178 MTPRDVVHLATALLLDPDDALFK--ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           + PR    +     ++      +  +       + D   GTG       + +       +
Sbjct: 92  LIPRPDTEVLVEKAVEIAIEKLQKCDQHSPSFRILDLGTGTGAIALALASELKFVAQKQQ 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I   ++  G +  PE   +        +L     +    +  +G           +F   
Sbjct: 152 IQLDII--GVDFLPEIVELARTNAKKNQLNVHFLQSHWFDNVRG-----------QFDVI 198

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGG 354
           +SNPP+             EH N    RF P    ++ +G    L H+           G
Sbjct: 199 VSNPPYIDN--------NDEHLNQGDVRFEPLSALVAEEGGYTDLRHIIEHAPQYLTENG 250


>gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227198441|gb|EEI78489.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 1243

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 1/117 (0%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES- 202
           E+   +   +V+ ++YE   R+   + SE      TP ++V              F +  
Sbjct: 865 EVSSASGKQQVIKDLYERFFRKAFKKQSEALGIVYTPVEIVDFILRSADQISRWHFGKGL 924

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                 + DP  GTG F+   +                  H  E+    + V    +
Sbjct: 925 TDEGVHILDPFTGTGTFMVRLLQSGLIEPDDLVRKYATELHATEIMLLAYYVAAVNI 981


>gi|308469285|ref|XP_003096881.1| hypothetical protein CRE_24721 [Caenorhabditis remanei]
 gi|308241296|gb|EFO85248.1| hypothetical protein CRE_24721 [Caenorhabditis remanei]
          Length = 559

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 75/253 (29%), Gaps = 34/253 (13%)

Query: 61  AFGGSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAI 114
               ++  +++F +      +  +  +E   +  G+      +E  +    D        
Sbjct: 173 WMQDADDVIDAFTREKEPVNFVAWYVAEPDHTLHGNGFHNKEIEKTLKKLDDLFLYFIKK 232

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F+D +  + +  +  A   +   K FS    H   V + V    +E           E  
Sbjct: 233 FDDNNLGTEVNIILTADHGHAEIKAFSSDHKHVMCVKNFVSGAGFEMGDHMIYPHSEEIG 292

Query: 175 EDFMTPRDVVHLATALLLD-------------PDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +   T        T  +               P+   +K S  + + +++P  G+    +
Sbjct: 293 KQIYTN------LTEAVKKYGYEVNIHWKEDVPERWHYKNSSRIGKIVFEPQVGSAISFS 346

Query: 222 DAMNHVADCGSHHKIPPI-LVPHGQELE-PETHAVCVA-------GMLIRRLESDPRRDL 272
                +      +         HGQ+ + PE  A  +           I  + S+     
Sbjct: 347 CTSEQMEKQYGENGTTKFNSSTHGQDPDRPEMRAFLMMRGPAFSENYTIADIPSNVDLHN 406

Query: 273 SKNIQQGSTLSKD 285
                 G T S++
Sbjct: 407 LMCHVLGITPSEN 419


>gi|197294412|ref|YP_001798953.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
 gi|171853739|emb|CAM11662.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
          Length = 212

 Score = 37.4 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 72/259 (27%), Gaps = 60/259 (23%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + R     +E      TP  V      +L                 + DP  G G  L
Sbjct: 2   YRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSLL 52

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                         K   +L     ++E  T    +    +                   
Sbjct: 53  LPW---------QQKGFDVLRV---DIEKTTFPNLIHNNFL------------------E 82

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
              KDL T ++    ++NPPF             + K     +   G           L+
Sbjct: 83  LTQKDLNT-QKISLVITNPPFNL-----------DFKTKNYVKEKYGGRP--------LL 122

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFF 399
                 ++    G    IVL +   F          ++++L +    I +I++LP D+F 
Sbjct: 123 PELWLSKIIELFGKDIPIVLFTPYGFRLNQSLNSKRLQKFLNQEYPEISSIISLPKDVFE 182

Query: 400 RTNIATYLWILSNRKTEER 418
                + + I +    +  
Sbjct: 183 NVVFHSEILIFNVNHLKPH 201


>gi|218961241|ref|YP_001741016.1| hypothetical protein CLOAM0937 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729898|emb|CAO80810.1| conserved hypothetical protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 1251

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 81/270 (30%), Gaps = 68/270 (25%)

Query: 88  LSTLGSTNTRNNLESYI--ASFSDNAKAIF------------EDFDFSSTIARLEKAGLL 133
              L +  T+NN  +YI    FSD    +             +D D +       K   +
Sbjct: 376 FECLDTEITQNNNNNYIRIDGFSDRPDNVLKVPDELFFSDKEQDIDLNEFYGTTNKRYQV 435

Query: 134 YKICKNFSGIELHPDT---------VPDRVMSNIYEHLIRRFGSEVSEGA----EDFMTP 180
             +    +  +              +   ++  ++E+L+  +  E    A      F TP
Sbjct: 436 CGLLNILNSYKFTVTENTPIEEEVALDPELLGRVFENLLASYNPETKTTARHETGSFYTP 495

Query: 181 RDVVHLAT---------------------------ALLLDPDDALFKESPGMIR------ 207
           R++V                                LLL   D     +P  +       
Sbjct: 496 REIVDYMVDESLIAYLLNELPHSTKAEAEDSELKLRLLLYYTDEDHLFNPEEVDKLIYAI 555

Query: 208 ---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               + DP CG+G FL   +  +      HK+ P      Q+     + +       +R 
Sbjct: 556 DNLKIIDPACGSGAFLMGLL--LKIVYMLHKLDPQNTKWKQQQIDNINNLIA---DTKRT 610

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +DP+       +  +++     T  +F +
Sbjct: 611 INDPKIREESIQKLRNSIQDIEETFDQFDF 640


>gi|257052780|ref|YP_003130613.1| restriction/modification enzyme [Halorhabdus utahensis DSM 12940]
 gi|256691543|gb|ACV11880.1| restriction/modification enzyme [Halorhabdus utahensis DSM 12940]
          Length = 1343

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 86/315 (27%), Gaps = 78/315 (24%)

Query: 33  KVILPFTLLRRLECA-----------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
           +++     L   E              E + SA+RE+       +   +   +    +F+
Sbjct: 317 RIVYRLLFLLFAEQRGMMADRGDLYTKEYSISALRERAERKQSQDHQTD-LWEGLKVTFH 375

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLEKAGLLYKI 136
              +      G T    N+  Y     D+ K  F      D D   +             
Sbjct: 376 LVGQ------GVTEEDLNVSGYNGGLFDDEKLEFVQDATCDNDAILSAIHNLTHVEQQGY 429

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIR---RFGSEV----------------------S 171
            +  S  +L  D +       +YE L+    +                            
Sbjct: 430 QQRISYADLGVDEI-----GAVYESLLEFTPQLAETALELDDRSISRGQFYLDDRGMERK 484

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT--------LYDPTCGTGGFLTDA 223
           E    +  P  V  L  + L    +   +++              + DP  G+G FL  A
Sbjct: 485 ETGSYYTKPELVDELIESALKPVVNDRLEDADTKEEKEEALLDIDVCDPAVGSGAFLIAA 544

Query: 224 MNHVADCGSHHKIPPIL----------------VPHGQELEPETHAVCVAGMLIRR-LES 266
            N +    +  +                       +G +L P    +    + I   +E 
Sbjct: 545 NNFLGKRLAEIRSDSAYPDEETVRQARRSVVQHCLYGVDLNPMAVELAKVSLWINSAVED 604

Query: 267 DPRRDLSKNIQQGST 281
            P   L   I+QG++
Sbjct: 605 QPLSFLDHRIKQGNS 619


>gi|146181391|ref|XP_001022651.2| hypothetical protein TTHERM_00727660 [Tetrahymena thermophila]
 gi|146144188|gb|EAS02406.2| hypothetical protein TTHERM_00727660 [Tetrahymena thermophila
           SB210]
          Length = 229

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           G       E  MTP +V  L  +++ + ++ L  +       + D  CGTG  L+  M  
Sbjct: 27  GEFSKLKLEQHMTPANVAALCVSMVAEIEENLEDQI------VGDFGCGTG-MLSCGMLC 79

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V                G EL+ +   + +  +  +  +      ++ N++         
Sbjct: 80  VGAG----------QVIGLELDSKYAQITLDTLEDKFEDPSMYDIININVKHW---QPPT 126

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             GK F   + NPPFG K E   D V  E            + K S    L 
Sbjct: 127 LNGKLFDTVVMNPPFGTKDEG-IDVVFLEKAFQTCSGNVYSMHKSSTRKFLQ 177


>gi|296112377|ref|YP_003626315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis
           RH4]
 gi|295920071|gb|ADG60422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis
           RH4]
 gi|326569193|gb|EGE19254.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC7]
          Length = 497

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  ++    D   A    F F++   +L                +  P ++       ++
Sbjct: 246 IVRHMQELDDEDLAKLRQF-FAARNWQLLLQPKGVDSVHRIDTEDARPTSLTVPPTGGLF 304

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + +  F            +P D   V+L+    +  D A    +      + D  CG G
Sbjct: 305 -YHLPNF------ELTYEFSPLDFTQVNLSVNQKMM-DLASSLLNLQKGERVLDLFCGLG 356

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F       V + G            G E   +             +        +K++ 
Sbjct: 357 NFSLVLARQVGESG---------FVVGVEGSEQMTERAKMNACANGIAH--TEFYAKDLT 405

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           Q  +         RF   L +PP    WE
Sbjct: 406 QDLSDQPWATGNNRFDALLIDPPRSGAWE 434


>gi|254880892|ref|ZP_05253602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254833685|gb|EET13994.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1128

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 37/164 (22%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGA----EDFMTPRDVVHLATA---------------- 189
           +   ++  ++E+L+  +  E  E A      F TPR++V                     
Sbjct: 404 LDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVKYMVDESLIAYLGESDFNRSL 463

Query: 190 -------LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV- 241
                   +   ++            + DP CG+G F    +N +A+     ++   +  
Sbjct: 464 FAPNFKYEVAHVEEYKSIAEKLKAVKVLDPACGSGAFPMGLLNRMAEVLQRIELNTNVYE 523

Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
                     +G +++     +      I  +    R     N 
Sbjct: 524 QKLAIIENCLYGSDIQSIAAQITKLRFFISLIVDCERDASKPNF 567


>gi|315230046|ref|YP_004070482.1| tRNA-(G10-N2) methyltransferase, tRNA-(G10-N2) dimethyltransferase
           [Thermococcus barophilus MP]
 gi|315183074|gb|ADT83259.1| tRNA-(G10-N2) methyltransferase, tRNA-(G10-N2) dimethyltransferase
           [Thermococcus barophilus MP]
          Length = 333

 Score = 37.4 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 30/125 (24%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                  + DP  GTGG L +A                
Sbjct: 170 PPRIARAMVNLA------------RAKMEILDPFMGTGGILIEAGLM------------G 205

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G +L  +        +    ++           +  +T  +++F  K F    ++P
Sbjct: 206 LKVYGVDLRRDMVEGARINLEYFGVK------CYVLKRGDATKLREIFPDKTFEAVATDP 259

Query: 300 PFGKK 304
           P+G  
Sbjct: 260 PYGSS 264


>gi|288561333|ref|YP_003424819.1| leucyl-tRNA synthetase LeuS [Methanobrevibacter ruminantium M1]
 gi|288544043|gb|ADC47927.1| leucyl-tRNA synthetase LeuS [Methanobrevibacter ruminantium M1]
          Length = 957

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
           ++   V+  + ++          +  +             A  V D+ GE +   +L+  
Sbjct: 643 YSADVVRLFLMASAEPWQDFDWREKEVRGTQRRLEWFREFAQKVEDIKGEKL---DLSNI 699

Query: 591 ENVPYLESIQDYFVREVSPHVPDA 614
           E VP   SI  + + +++ H+ +A
Sbjct: 700 EEVPLERSIDKWMINQLNIHIKEA 723


>gi|78188358|ref|YP_378696.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78170557|gb|ABB27653.1| DEAD/DEAH box helicase-like protein [Chlorobium chlorochromatii CaD3]
          Length = 1301

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 13/302 (4%)

Query: 64   GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +I+ E  +++          +     G +  ++N  S         +++ +  +  S 
Sbjct: 768  NPSINEEQAIEMLAQHIITQPIFDALFEGYSFVKSNAVSV------AMQSMIDALEKGSN 821

Query: 124  IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +A  ++    +          +       R++  +Y+   +    ++ E      TP +V
Sbjct: 822  LAEQDETLQRFYDSVRKRAEGIDNAEGKQRIIIELYDKFFKTAFPKMVEKLGIVYTPVEV 881

Query: 184  VHLATALLLDP-DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
            V      + D       +        + DP  GTG F+   +       +  +       
Sbjct: 882  VDFIIHSVNDILKKEFNRTISDENIHILDPFTGTGTFIVRLLQSGLIDINDLERKYKHEL 941

Query: 243  HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP-PF 301
            H  E+    + +         +E+     +S     G    ++     R+    +N    
Sbjct: 942  HANEIVLLAYYIAAIN-----IENAYHDAISGYRNLGLGFGEENLVTHRYLNTNANFQRT 996

Query: 302  GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                  D+   +    N EL   G      S+          +   +     GR + +  
Sbjct: 997  NCLAGSDEFGRDDLQNNKELSERGDVWLDESNKESSEFNSGKHSRRIWEKEQGRISTISG 1056

Query: 362  SS 363
            +S
Sbjct: 1057 NS 1058


>gi|72163127|ref|YP_290784.1| DNA methylase [Thermobifida fusca YX]
 gi|71916859|gb|AAZ56761.1| putative DNA methylase [Thermobifida fusca YX]
          Length = 1208

 Score = 37.4 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 42/152 (27%), Gaps = 33/152 (21%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             +F+  +L       R ++ +Y+ L            +   TP  VV     L L+P  
Sbjct: 186 IHDFTDPDL-----DTRFLAELYQEL----SESARAADDLLPTPDFVVDFLLDLTLEPAI 236

Query: 197 ALFKESP--------------GMIRTLYDPTCGTGGFLTDAMNHVADCGS---------- 232
             F   P                     DP CG+G FL      +               
Sbjct: 237 DEFGLDPELDVHDSSGAPVWRHRGLRTVDPACGSGEFLLGLFTRILARNRAAAGPGADRW 296

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                 +   HG +  P    +    +LI  L
Sbjct: 297 ELVRKALNSVHGCDKNPFAANIARFRLLIAVL 328


>gi|326571866|gb|EGE21871.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC8]
          Length = 497

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  ++    D   A    F F++   +L                +  P ++       ++
Sbjct: 246 IVRHMQELDDEDLAKLRQF-FAARNWQLLLQPKGVDSVHRIDTEDARPTSLTVPPTGGLF 304

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            + +  F            +P D   V+L+    +  D A    +      + D  CG G
Sbjct: 305 -YHLPNF------DLTYEFSPLDFTQVNLSVNQKMM-DLASSLLNLQKGERVLDLFCGLG 356

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            F       V + G            G E   +             +        +K++ 
Sbjct: 357 NFSLVLARQVGESG---------FVVGVEGSEQMTERAKMNACANGIAH--TEFYAKDLT 405

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           Q  +         RF   L +PP    WE
Sbjct: 406 QDLSDQPWATGNNRFDALLIDPPRSGAWE 434


>gi|15611680|ref|NP_223331.1| hypothetical protein jhp0613 [Helicobacter pylori J99]
 gi|4155166|gb|AAD06194.1| putative [Helicobacter pylori J99]
          Length = 1167

 Score = 37.4 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 68/562 (12%), Positives = 154/562 (27%), Gaps = 79/562 (14%)

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           ++   +K         S      +      +N+++ IA   D       D         L
Sbjct: 322 NIHQSIKEEEALDMIISHIITKPIFDAIFGDNIKNPIAKALDKMVLKLSDLGLEGETKDL 381

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +      K                  ++ N+Y    +    + SE      TP +VV   
Sbjct: 382 KNLYESVKT----EAARAKSQKSQQELIKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFI 437

Query: 188 TALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHG 244
                         +      T++DP  GTG F+   ++   D  S   +          
Sbjct: 438 LRATNGILKKHFNTDFNDQSITIFDPFMGTGSFIARLLSKENDFISDEALKEKFQKGLFA 497

Query: 245 QELEPETHAVCVAGML---------IRRLESDPRRDLSKNIQQGS---------TLSKDL 286
            ++   ++ + +  +          ++  ++    D    +++ +          L +DL
Sbjct: 498 FDIVLLSYYIALINITQAAQNRDSSLKNFKNIALTDSLDYLEEKNDKGVIPGFEYLFEDL 557

Query: 287 FTGKRFH---------YCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKI---S 332
              K              + NPP+  G K E D +      K  +      G        
Sbjct: 558 KENKEIKTTMEKQNIRVIIGNPPYSSGAKSENDNNQNLSHPKLEKRVYETYGKNSTAQNK 617

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +   L+H            G    V++ S + +  A       R+ + ++      + 
Sbjct: 618 NSTRDTLIHSIRMASDLLKDKGVLGFVVNGSFIDSKSADG----FRKCVAQDFSHLYALN 673

Query: 393 L--------------PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           L                 +F   + +   +      K          I   ++   ++ E
Sbjct: 674 LRGNARTSGEERKKQGDGIFDSGSRVTVAIIFFVKDKDAPNHT----IFYYEVEDYLKRE 729

Query: 438 GKKRRIINDDQR-----RQIL----DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            K   + N +       ++I       ++++ N  F +++  +     +I        + 
Sbjct: 730 AKLNLLANFENLDSVPFKEITPNDKGDWINQRNDDFEKLIPLKRDKKSKI-------FNA 782

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           I D        +   W   +   ++    +   +              +E+ K   AK  
Sbjct: 783 IFDLNSNGVKTSRDPWV-YNFSQKTLMQSVQNCIDTYNADLKRFNERFREAFKQRTAKDK 841

Query: 549 KVKASKSFIVAFINAFGRKDPR 570
            +K S        +     D  
Sbjct: 842 GIKKSADRYKHLNDREITTDKT 863


>gi|297625507|ref|YP_003687270.1| helicase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921272|emb|CBL55824.1| helicase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 1593

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 1/104 (0%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCG 215
            +YE   ++     +       TP ++V        D     F          + DP  G
Sbjct: 839 RLYEDFFKKAFPTQASSLGVVYTPVEIVDFILRAADDVCRQEFGYGLTDEGVHILDPFTG 898

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           TG F+   +                     E+    + +    +
Sbjct: 899 TGTFIVRLLESGIIRPEDLARKYASELWANEIMLLAYYIACVNI 942


>gi|289548685|ref|YP_003473673.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermocrinis albus DSM 14484]
 gi|289182302|gb|ADC89546.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermocrinis albus DSM 14484]
          Length = 270

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 26/206 (12%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           F+ +E +   +         ++L+    F     +  E  + PR    L    +L     
Sbjct: 43  FNEVERYISMLSRLEEGYPLQYLLGEWEFYGRTFKVEEGVLIPRPETELLVEKILT---T 99

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           + K+ P      ++   GTG      +  +          P LV +  ++ P+   +   
Sbjct: 100 VNKDRPLKG---FEIGVGTGCISVTLLLEI----------PSLVMYADDVNPKALQLAYQ 146

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              + +++          + +GS    +   G RFH  +SNPP+  +   D      + +
Sbjct: 147 NACMHQVQD------RLYLMEGSLF--EPVRGMRFHLVVSNPPYIPEGMWDSLPTTVKWE 198

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLA 343
                  GP   +  +     + H  
Sbjct: 199 GKTSLIGGPKGYEFYEKIASEIHHFL 224


>gi|94993496|ref|YP_601594.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94547004|gb|ABF37050.1| Adenine-specific methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 332

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 75/269 (27%), Gaps = 44/269 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ L  +        A    TP  +  +   LL    D    E       + +   GT
Sbjct: 83  KAYQFLFIKAAQTEQLQANHQFTPDAIGFILLYLLEQLSDKDSLE-------VLEIGSGT 135

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G      +N              L   G EL+     +  +             D S + 
Sbjct: 136 GNLAQTLLN---------NTSKSLDYVGIELDDLLIDLSAS--------IAEIMDSSAHF 178

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            Q   +   L         +S+ P G     D                   +      + 
Sbjct: 179 IQEDAVRPQLLKES--DIVISDLPVGYYPNDDIAK-------------RYKVASSDKHTY 223

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              + +   L+      G A  ++  + L + ++      +++WL +   +  ++ LP  
Sbjct: 224 AHHLLMEQSLKYLK-KDGFAIFLVPVNLLTSPQS----QLLKQWLKDYAQVVTLITLPDS 278

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLI 425
           +F   + A  + +L  +        V  I
Sbjct: 279 IFGHPSNAKSIIVLQKQTDHPMETFVYPI 307


>gi|86748298|ref|YP_484794.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Rhodopseudomonas palustris HaA2]
 gi|86571326|gb|ABD05883.1| modification methylase, HemK family [Rhodopseudomonas palustris
           HaA2]
          Length = 354

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 17/127 (13%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           E  + PR  +        D  +      P  +  + D   G+G     A     +     
Sbjct: 157 ERVIVPRSYIGELLDSHFDGGETSLIGDPEAVARVLDLCTGSGCLAILAARSFPNAAVDA 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      +L  +  AV    +    L          ++  G   +  L    R+  
Sbjct: 217 ----------VDLSEDALAVATRNVADHHLGD------RLSLHHGDLFA-PLLQDARYDL 259

Query: 295 CLSNPPF 301
            ++NPP+
Sbjct: 260 IITNPPY 266


>gi|327459230|gb|EGF05578.1| adenine-specific methyltransferase [Streptococcus sanguinis SK1057]
          Length = 321

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 100/335 (29%), Gaps = 63/335 (18%)

Query: 86  YSLSTLGSTNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
           Y+L      N +N L +  Y A    N   +  D D    +   EK             +
Sbjct: 10  YTLILENVQNIQNALATNFYDALIEQNGIYLDGDTDLQEVLTNDEK----------IRSL 59

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L+ +          Y+ ++ +             TP  +  L T LL         +  
Sbjct: 60  HLNKEEW-----RRAYQFILMKAAQTEPMQVNHQFTPDTIGFLITFLLDQLAHGEEAD-- 112

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC-VAGMLIR 262
                + +   GTG      +NH     +  KI  + +     L   + ++  V      
Sbjct: 113 -----VLEIGSGTGNLAETILNH-----TQKKIDYLGLELDDLLIDLSASIAEVMNSKAH 162

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                          QG  +   +         +S+ P G   +    +           
Sbjct: 163 -------------FAQGDAVRPQVLKES--DIIISDLPVGYYPDDSIAS----------- 196

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                +    + +    + +   L+     GG A  +  +  L + +A      +++WLL
Sbjct: 197 --RYEVASPDEHTYAHHLLMEQSLKYLKP-GGYAIFLAPNDLLTSAQAP----LLKKWLL 249

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
                 A++ LP  +F  +  A  L++L  ++   
Sbjct: 250 AKAQFIAMITLPESIFSSSKHAKTLFVLRKQEANN 284


>gi|304438058|ref|ZP_07398002.1| type IIS restriction enzyme R and M protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369012|gb|EFM22693.1| type IIS restriction enzyme R and M protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 1200

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 16/147 (10%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
             +  LEP       +        + L S +       +   E            + L S
Sbjct: 335 FFDDYLEPLFYEGLNQNRGDQAFFLPLHSRIPFLNGGLFEELEGYDWKNNDFCIPDELFS 394

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                  +A  I + FD  +     ++                        ++  ++E+L
Sbjct: 395 NADENGRDADGILDVFDRYNFTMVEDEPMEREVAVD-------------PEMLGKVFENL 441

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATA 189
           +     +  +    F TPR++VH    
Sbjct: 442 LD---VKDRKSKGAFYTPREIVHYMCQ 465


>gi|255726602|ref|XP_002548227.1| hypothetical protein CTRG_02524 [Candida tropicalis MYA-3404]
 gi|240134151|gb|EER33706.1| hypothetical protein CTRG_02524 [Candida tropicalis MYA-3404]
          Length = 434

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 90/326 (27%), Gaps = 41/326 (12%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
            E        + L         + F K    SF    ++   +     +       I SF
Sbjct: 67  YELWGYGKTYEELHVDVKEKSSDKFDKYKECSF----KFDFKSFQGKQSNREKVKTIESF 122

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           S  A       D  +     E   ++ +  K    + ++     +  +S   E LI R+ 
Sbjct: 123 SYLAFDG--KIDLKTP---DETFVVMEEYIKGGPKVPVNIWFARELQLSQRAEGLIERYD 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +            ++  +   L                + +YDP  GTG FL  A N  
Sbjct: 178 LKKRNYIGTTSFEAELSLVTCNLA----------QVAPGKIVYDPFTGTGSFLVAAANFG 227

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                      +L   G +   ++             +     +   ++         L 
Sbjct: 228 GLTIGSDIDVRMLNGKGPDANIKS-----------NFKQYGTVESYLDVLTMDFTHNALR 276

Query: 288 TGKRFHYCLSNPPF---------GKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSML 337
           +  +    + +PP+         G K E+     E +  NGE+               + 
Sbjct: 277 SDLQIDTIVCDPPYGVREGLRVLGAKNEEKATGRENDIFNGEIAYLRREFIPPKKPYQLA 336

Query: 338 FLMH-LANKLELPPNGGGRAAIVLSS 362
            L+  L          GGR A  + +
Sbjct: 337 SLLEDLLEFASQRLPIGGRLAFWMPT 362


>gi|302904703|ref|XP_003049118.1| hypothetical protein NECHADRAFT_45294 [Nectria haematococca mpVI
           77-13-4]
 gi|256730053|gb|EEU43405.1| hypothetical protein NECHADRAFT_45294 [Nectria haematococca mpVI
           77-13-4]
          Length = 457

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 16/143 (11%)

Query: 29  TDFGKVILPFTL------------LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
            ++   I PF              L+ L     P      E     G  +        + 
Sbjct: 80  AEYEDYIKPFLFKLEKHRGGFSGPLKFLNKWYSPIDEKRLEDVTPSGKLDAKHVGRHLMK 139

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
            Y    +S   +       T +  ++++  F ++    F   D    +    +A L +K 
Sbjct: 140 RYRHLASSVKRVMADTKARTYDTAKAFVDVFPNSGDIEFVRAD-KKDLNNATRALLPHKA 198

Query: 137 CKNFSGIELHPDTVPDRVMSNIY 159
           C  FS     P T       N+Y
Sbjct: 199 CSEFSK---DPGTKELHEFLNVY 218


>gi|281494531|ref|NP_792130.3| methylase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852753|gb|AAO55825.1| methylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 762

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 99/360 (27%), Gaps = 71/360 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             +L+R              + L  G  +++    ++  G       E+S    G  NT 
Sbjct: 73  LLVLKRF--------PMKDAEDLYHGVLDVEWHDHLEPEG---TIAVEFSGHGSGIDNTH 121

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                   +  D  +    +      I    +  L     +    ++L   ++  R    
Sbjct: 122 FGALKVKDAIVDKLRTPEGERPSVDKINPDLRVHLRLDRGEAILSLDLSGHSLHQRG--- 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
              + +++  + + E            +LA A+L+    A +         L DP CG G
Sbjct: 179 ---YRLQQGAAPLKE------------NLAAAILI---RAGWPRIAAEGGALADPMCGVG 220

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-------------VCVAGMLIRRL 264
            FL +A    AD   + K             P                 +      IR  
Sbjct: 221 TFLVEAGMIAADIAPNIKRERWGFSAWLGHVPTLWRKLHDEALARAEAGLAKTPSWIRGY 280

Query: 265 ESDPR--------------RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           E+DPR               D  K  Q      +      +    + NPP+G++   +  
Sbjct: 281 EADPRLIQPGRNNIERAGLSDWIKVYQGEVATFEPRPDQNQKGLVICNPPYGERLGDEAS 340

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +      GE  R               L   A      P+ G R  I       F   A
Sbjct: 341 LLYLYQNLGERLR------------QACLNWEAAVFTGAPDLGKRMGIRSHKQYSFWNGA 388


>gi|108563078|ref|YP_627394.1| hypothetical protein HPAG1_0653 [Helicobacter pylori HPAG1]
 gi|107836851|gb|ABF84720.1| hypothetical protein HPAG1_0653 [Helicobacter pylori HPAG1]
          Length = 1389

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 73/252 (28%), Gaps = 32/252 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
            ++ N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 633 ELIKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 692

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGML--------- 260
           P  GTG F+   ++      S   +           ++   ++ + +  +          
Sbjct: 693 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 752

Query: 261 IRRLESDPRRDLSKNIQQ--------------GSTLSKDLFTGKRFHYCLSNPPF--GKK 304
           ++  ++    D    +++               +   KD    +     + NPP+  G K
Sbjct: 753 LKNFKNIALTDSLDYLEEKTNKGVLPLYEDLKENKDIKDTLADQNIRVIIGNPPYSAGAK 812

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKIS----DGSMLFLMHLANKLELPPNGGGRAAIVL 360
            E D +      K  +      G    S      +   L+             G    V+
Sbjct: 813 SENDNNQNLTHPKLQKWVYETYGKNSTSRNVGQTTRDTLIQSIRMASDVVKDKGVIGFVV 872

Query: 361 SSSPLFNGRAGS 372
           + S + +  A  
Sbjct: 873 NGSFIDSKSADG 884


>gi|310659054|ref|YP_003936775.1| hypothetical protein CLOST_1750 [Clostridium sticklandii DSM 519]
 gi|308825832|emb|CBH21870.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 376

 Score = 37.0 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 35/149 (23%)

Query: 207 RTLYDPTCGTGGFLTDAM-----------------------NHVADCGSH----HKIPPI 239
           RTL DP CG+G  L +A                         HV     +     +    
Sbjct: 192 RTLVDPMCGSGTILIEAALYGAGIMPGINRNFTGENLSFLPKHVWQTERNEALSQEKDVQ 251

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G +++ +   +      +  +      ++    +          T + + + ++NP
Sbjct: 252 FKLKGYDIDEDVIELAKENAELAGVGHLIDFEVKDMTK--------WETDEEYGFIITNP 303

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           P+G++   ++D      + G++ R     
Sbjct: 304 PYGERLSAEEDITGFYKEMGKIFRNLKNW 332


>gi|240169376|ref|ZP_04748035.1| putative type II DNA modification enzyme [Mycobacterium kansasii
           ATCC 12478]
          Length = 1361

 Score = 37.0 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 20/93 (21%)

Query: 149 TVPDRVMSNIYEHLI----RRFGSE-----------VSEGAEDFMTPRDVVHLATALLLD 193
            +    +  +YE L+    R    +             + +  + TP +++ L     L+
Sbjct: 447 NLDSEELGGMYESLLAYTPRYNADDRTFTLDVATGSERKKSGSYYTPSELIALVLDEALN 506

Query: 194 P--DDALFKESPG---MIRTLYDPTCGTGGFLT 221
           P  D+AL    P    +  ++ DP CG+G F+ 
Sbjct: 507 PLIDEALRSADPEAALLDLSVVDPACGSGHFVV 539


>gi|288549971|ref|ZP_05968806.2| conserved hypothetical protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316808|gb|EFC55746.1| conserved hypothetical protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 1067

 Score = 37.0 bits (84), Expect = 9.1,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 21/154 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ ++Y+ L+     ++ +   +F TP  +V      + +P          M + + DP
Sbjct: 340 DVLRDLYQGLVP---GKLRQSLGEFYTPDWLVDFTLNKVSEPS--------LMTKRVLDP 388

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRR-- 263
           TCG+G FL   +           +              G +L P          LI    
Sbjct: 389 TCGSGAFLLAVIRKKRQLAKEKNLSARETLKLICDTVWGFDLNPLAVQTARVNFLIEVAD 448

Query: 264 -LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
            L   P ++L   +     +     T K     +
Sbjct: 449 LLSQCPGQELEVPVLMADAIYSPASTPKTSDAII 482


>gi|330968135|gb|EGH68395.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 750

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 99/360 (27%), Gaps = 71/360 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             +L+R              + L  G  +++    ++  G       E+S    G  NT 
Sbjct: 61  LLVLKRF--------PMKDAEDLYHGVLDVEWHDHLEPEG---TIAVEFSGHGSGIDNTH 109

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                   +  D  +    +      I    +  L     +    ++L   ++  R    
Sbjct: 110 FGALKVKDAIVDKLRTPEGERPSVDKINPDLRVHLRLDRGEAILSLDLSGHSLHQRG--- 166

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
              + +++  + + E            +LA A+L+    A +         L DP CG G
Sbjct: 167 ---YRLQQGAAPLKE------------NLAAAILI---RAGWPRIAAEGGALADPMCGVG 208

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-------------VCVAGMLIRRL 264
            FL +A    AD   + K             P                 +      IR  
Sbjct: 209 TFLVEAGMIAADIAPNIKRERWGFSAWLGHVPTLWRKLHDEALARAEAGLAKTPSWIRGY 268

Query: 265 ESDPR--------------RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           E+DPR               D  K  Q      +      +    + NPP+G++   +  
Sbjct: 269 EADPRLIQPGRNNIERAGLSDWIKVYQGEVATFEPRPDQNQKGLVICNPPYGERLGDEAS 328

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +      GE  R               L   A      P+ G R  I       F   A
Sbjct: 329 LLYLYQNLGERLR------------QACLNWEAAVFTGAPDLGKRMGIRSHKQYSFWNGA 376


>gi|319776410|ref|YP_004138898.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Haemophilus influenzae F3047]
 gi|329123574|ref|ZP_08252136.1| protein methyltransferase HemK [Haemophilus aegyptius ATCC 11116]
 gi|317451001|emb|CBY87231.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Haemophilus influenzae F3047]
 gi|327470316|gb|EGF15776.1| protein methyltransferase HemK [Haemophilus aegyptius ATCC 11116]
          Length = 292

 Score = 37.0 bits (84), Expect = 9.2,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 21/177 (11%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           + PR    +     L       +E+P     + D   GTG       + +A       IP
Sbjct: 92  LIPRPDTEILVEKALQIALEKLEENP-PHFCILDLGTGTGAIALALASELAPICQKQHIP 150

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   G +L P+  A+  +                 N+Q   +   D  TG +F   +S
Sbjct: 151 --LEIIGVDLMPDVVALAQSN----------TERNQLNVQFLQSCWFDNITG-KFDLIVS 197

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           NPP+        DA ++    G++          +D     L H+        N  G
Sbjct: 198 NPPY-------IDAQDEHLHQGDVSFEPLSALVANDEGYADLRHIIELAPSYLNSNG 247


>gi|150403072|ref|YP_001330366.1| putative RNA methylase [Methanococcus maripaludis C7]
 gi|150034102|gb|ABR66215.1| putative RNA methylase [Methanococcus maripaludis C7]
          Length = 350

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 14/138 (10%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              + DP CGTGGFL +A                    G +++ +     +  +    L 
Sbjct: 205 GEIVLDPFCGTGGFLIEAG------------FLGCKLIGSDIDEQMVKGAILNLNTYDL- 251

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK-EHKNGELGRF 324
           S     + +N  +  +        ++    +++PP+G    K  D +E  E   G L   
Sbjct: 252 SKQVISIKQNDAKNVSKYLGELGIEKIDGIVTDPPYGISTFKKGDMLEIFEKIAGVLKNN 311

Query: 325 GPGLPKISDGSMLFLMHL 342
              +    +   L L  +
Sbjct: 312 DYLVFAAPNKMELNLELV 329


>gi|239826790|ref|YP_002949414.1| Eco57I restriction endonuclease [Geobacillus sp. WCH70]
 gi|239807083|gb|ACS24148.1| Eco57I restriction endonuclease [Geobacillus sp. WCH70]
          Length = 1144

 Score = 37.0 bits (84), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   ++NPP+  K+            N  L +F     K     +        +     
Sbjct: 471 KYEVVVTNPPYHNKY------------NPVLKKFMNDNYKDYKSDL--YSAFIYRCTQMT 516

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA++   + +F     S   ++R++++EN  I +++ L    F    +    +++
Sbjct: 517 VENGFAALMTPFTWMFI----SSHEKLRKYIIENQSISSLIQLEYSAFTEATVPICTFVI 572

Query: 411 SNR 413
            N+
Sbjct: 573 QNQ 575


>gi|331016195|gb|EGH96251.1| 23S rRNA m(2)G2445 methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 750

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 98/360 (27%), Gaps = 71/360 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             +L+R              + L  G  +++    ++  G       E+S    G  NT 
Sbjct: 61  LLVLKRF--------PMKDAEDLYHGVLDVEWHDHLEPEG---TIAVEFSGHGSGIDNTH 109

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                   +  D  +    +      I    +  L     +    ++L   ++  R    
Sbjct: 110 FGALKVKDAIVDKLRTPEGERPSVDKINPDLRVHLRLDRGEAILSLDLSGHSLHQRG--- 166

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
              + ++   + + E            +LA A+L+    A +         L DP CG G
Sbjct: 167 ---YRLQHGAAPLKE------------NLAAAILI---RAGWPRIAAEGGALADPMCGVG 208

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA-------------VCVAGMLIRRL 264
            FL +A    AD   + K             P                 +      IR  
Sbjct: 209 TFLVEAGMIAADIAPNIKRERWGFSAWLGHVPTLWRKLHDEALARAEAGLAKTPSWIRGY 268

Query: 265 ESDPR--------------RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           E+DPR               D  K  +      +      +    + NPP+G++   +  
Sbjct: 269 EADPRLIQPGRNNIERAGLSDWIKVYRGEVATFEPRPDQNQKGLVICNPPYGERLGDEAS 328

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +      GE  R               L   A      P+ G R  I       F   A
Sbjct: 329 LLYLYQNLGERLR------------QACLNWEAAVFTGAPDLGKRMGIRSHKQYSFWNGA 376


>gi|317496497|ref|ZP_07954846.1| hypothetical protein HMPREF0432_01450 [Gemella moribillum M424]
 gi|316913300|gb|EFV34797.1| hypothetical protein HMPREF0432_01450 [Gemella moribillum M424]
          Length = 1714

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 66/216 (30%), Gaps = 51/216 (23%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + +P+ G G F+          G+          +G EL+  +  +              
Sbjct: 8   ILEPSMGIGNFI----------GNIPDEMNKSKFYGVELDSVSGRIGKL----------- 46

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                ++  Q   L +  F+   F   + N PFG+    D++                  
Sbjct: 47  --LYPESDIQIKGLEETSFSNNFFDVAIGNVPFGEYKVNDRE------------------ 86

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              +  + L   +   K       GG  A + SS  +        +  +RR+L       
Sbjct: 87  --YNKNNFLIHDYFFAKSIDKVRNGGVIAFITSSGTM-----DKKDESVRRYLAARAEFL 139

Query: 389 AIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             + LP D F     T + + +  L  R +   R +
Sbjct: 140 GAIRLPNDTFKGVAGTEVTSDIIFLKKRDSIREREE 175


>gi|52549321|gb|AAU83170.1| adenine specific DNA methyltransferase [uncultured archaeon
           GZfos26G2]
          Length = 1034

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFKESPGMIRTLYDPT 213
           + Y+  +  +  E       + TP +VV         LL       K        L DP 
Sbjct: 314 HFYDTFLGEYNPEERAKLGVYYTPPEVVDYIVKSIHKLLKEKFGKEKGLAEEGLKLLDPA 373

Query: 214 CGTGGFLTDAM 224
            GT  F+  A+
Sbjct: 374 AGTLTFIIRAL 384


>gi|315611933|ref|ZP_07886851.1| adenine-specific methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315315922|gb|EFU63956.1| adenine-specific methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 317

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +    + +   L+   +  G A  +  S  L + ++      ++ WL +   + AI+ALP
Sbjct: 207 TYAHHLLMEQGLKYLKSD-GYAIFLAPSDLLTSPQSD----LLKGWLKDEVSLAAIIALP 261

Query: 395 TDLFFRTNIATYLWILSNRKTEE 417
            D+F   + A  +++L  +  +E
Sbjct: 262 EDIFSTASQAKSIFVLQKKGDKE 284


>gi|296126924|ref|YP_003634176.1| hypothetical protein Bmur_1897 [Brachyspira murdochii DSM 12563]
 gi|296018740|gb|ADG71977.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 410

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 15/129 (11%)

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F    F   + NPP+ +  E D      E +      F     K +DG          K 
Sbjct: 7   FAWGGFDVVIGNPPYVRNRELD------EKQKMYFNSF----YKSADGQYDLYQLFYEKG 56

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIAT 405
                       + S+             ++R ++L+N +I+ I+ +   ++F + +   
Sbjct: 57  INILKENSILGYITSNKFTIASYG----KKLREYILDNCIIKQIIDVSMINVFKKVSTYP 112

Query: 406 YLWILSNRK 414
           Y+ IL   K
Sbjct: 113 YIIILEKDK 121


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.127    0.337 

Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,409,121,691
Number of Sequences: 14124377
Number of extensions: 485311984
Number of successful extensions: 1368774
Number of sequences better than 10.0: 5975
Number of HSP's better than 10.0 without gapping: 4443
Number of HSP's successfully gapped in prelim test: 4439
Number of HSP's that attempted gapping in prelim test: 1329286
Number of HSP's gapped (non-prelim): 12854
length of query: 674
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 528
effective length of database: 2,780,634,588
effective search space: 1468175062464
effective search space used: 1468175062464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 85 (37.4 bits)